1d0295fc0SJunchao Zhang #include <petscvec.h> 2af0996ceSBarry Smith #include <petsc/private/dmimpl.h> /*I "petscdm.h" I*/ 3c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 4e6f8dbb6SToby Isaac #include <petsc/private/petscdsimpl.h> /*I "petscds.h" I*/ 53e922f36SToby Isaac #include <petscdmplex.h> 6f19dbd58SToby Isaac #include <petscdmfield.h> 70c312b8eSJed Brown #include <petscsf.h> 82764a2aaSMatthew G. Knepley #include <petscds.h> 947c6ae99SBarry Smith 10f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 11f918ec44SMatthew G. Knepley #include <petscfeceed.h> 12f918ec44SMatthew G. Knepley #endif 13f918ec44SMatthew G. Knepley 14cea3dcb8SSatish Balay #if !defined(PETSC_HAVE_WINDOWS_COMPILERS) 15cea3dcb8SSatish Balay #include <petsc/private/valgrind/memcheck.h> 1600d952a4SJed Brown #endif 1700d952a4SJed Brown 18732e2eb9SMatthew G Knepley PetscClassId DM_CLASSID; 19d67d17b1SMatthew G. Knepley PetscClassId DMLABEL_CLASSID; 205b8ffe73SMark Adams PetscLogEvent DM_Convert, DM_GlobalToLocal, DM_LocalToGlobal, DM_LocalToLocal, DM_LocatePoints, DM_Coarsen, DM_Refine, DM_CreateInterpolation, DM_CreateRestriction, DM_CreateInjection, DM_CreateMatrix, DM_CreateMassMatrix, DM_Load, DM_AdaptInterpolator; 2167a56275SMatthew G Knepley 22ea78f98cSLisandro Dalcin const char *const DMBoundaryTypes[] = {"NONE", "GHOSTED", "MIRROR", "PERIODIC", "TWIST", "DMBoundaryType", "DM_BOUNDARY_", NULL}; 23d1b3049bSMatthew G. Knepley const char *const DMBoundaryConditionTypes[] = {"INVALID", "ESSENTIAL", "NATURAL", "INVALID", "INVALID", "ESSENTIAL_FIELD", "NATURAL_FIELD", "INVALID", "INVALID", "ESSENTIAL_BD_FIELD", "NATURAL_RIEMANN", "DMBoundaryConditionType", "DM_BC_", NULL}; 24*863027abSJed Brown const char *const DMBlockingTypes[] = {"POINT", "FIELD_NODE", "DMBlockingType", "DM_BLOCKING_", NULL}; 259371c9d4SSatish Balay const char *const DMPolytopeTypes[] = {"vertex", "segment", "tensor_segment", "triangle", "quadrilateral", "tensor_quad", "tetrahedron", "hexahedron", "triangular_prism", "tensor_triangular_prism", "tensor_quadrilateral_prism", 269371c9d4SSatish Balay "pyramid", "FV_ghost_cell", "interior_ghost_cell", "unknown", "invalid", "DMPolytopeType", "DM_POLYTOPE_", NULL}; 272cbb9b06SVaclav Hapla const char *const DMCopyLabelsModes[] = {"replace", "keep", "fail", "DMCopyLabelsMode", "DM_COPY_LABELS_", NULL}; 2860c22052SBarry Smith 29a4121054SBarry Smith /*@ 30bb7acecfSBarry Smith DMCreate - Creates an empty `DM` object. `DM`s are the abstract objects in PETSc that mediate between meshes and discretizations and the 31bb7acecfSBarry Smith algebraic solvers, time integrators, and optimization algorithms. 32a4121054SBarry Smith 33d083f849SBarry Smith Collective 34a4121054SBarry Smith 35a4121054SBarry Smith Input Parameter: 36bb7acecfSBarry Smith . comm - The communicator for the `DM` object 37a4121054SBarry Smith 38a4121054SBarry Smith Output Parameter: 39bb7acecfSBarry Smith . dm - The `DM` object 40a4121054SBarry Smith 41a4121054SBarry Smith Level: beginner 42a4121054SBarry Smith 43bb7acecfSBarry Smith Notes: 44bb7acecfSBarry Smith See `DMType` for a brief summary of available `DM`. 45bb7acecfSBarry Smith 46bb7acecfSBarry Smith The type must then be set with `DMSetType()`. If you never call `DMSetType()` it will generate an 47bb7acecfSBarry Smith error when you try to use the dm. 48bb7acecfSBarry Smith 49bb7acecfSBarry Smith .seealso: `DMSetType()`, `DMType`, `DMDACreate()`, `DMDA`, `DMSLICED`, `DMCOMPOSITE`, `DMPLEX`, `DMMOAB`, `DMNETWORK` 50a4121054SBarry Smith @*/ 51d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreate(MPI_Comm comm, DM *dm) 52d71ae5a4SJacob Faibussowitsch { 53a4121054SBarry Smith DM v; 54e5e52638SMatthew G. Knepley PetscDS ds; 55a4121054SBarry Smith 56a4121054SBarry Smith PetscFunctionBegin; 571411c6eeSJed Brown PetscValidPointer(dm, 2); 580298fd71SBarry Smith *dm = NULL; 599566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 60a4121054SBarry Smith 619566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(v, DM_CLASSID, "DM", "Distribution Manager", "DM", comm, DMDestroy, DMView)); 62e7c4fc90SDmitry Karpeev 6362e5d2d2SJDBetteridge ((PetscObject)v)->non_cyclic_references = &DMCountNonCyclicReferences; 6462e5d2d2SJDBetteridge 6549be4549SMatthew G. Knepley v->setupcalled = PETSC_FALSE; 6649be4549SMatthew G. Knepley v->setfromoptionscalled = PETSC_FALSE; 670298fd71SBarry Smith v->ltogmap = NULL; 68a4ea9b21SRichard Tran Mills v->bind_below = 0; 691411c6eeSJed Brown v->bs = 1; 70171400e9SBarry Smith v->coloringtype = IS_COLORING_GLOBAL; 719566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sf)); 729566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sectionSF)); 73c58f1c22SToby Isaac v->labels = NULL; 7434aa8a36SMatthew G. Knepley v->adjacency[0] = PETSC_FALSE; 7534aa8a36SMatthew G. Knepley v->adjacency[1] = PETSC_TRUE; 76c58f1c22SToby Isaac v->depthLabel = NULL; 77ba2698f1SMatthew G. Knepley v->celltypeLabel = NULL; 781bb6d2a8SBarry Smith v->localSection = NULL; 791bb6d2a8SBarry Smith v->globalSection = NULL; 803b8ba7d1SJed Brown v->defaultConstraint.section = NULL; 813b8ba7d1SJed Brown v->defaultConstraint.mat = NULL; 8279769bd5SJed Brown v->defaultConstraint.bias = NULL; 836858538eSMatthew G. Knepley v->coordinates[0].dim = PETSC_DEFAULT; 846858538eSMatthew G. Knepley v->coordinates[1].dim = PETSC_DEFAULT; 856858538eSMatthew G. Knepley v->sparseLocalize = PETSC_TRUE; 8696173672SStefano Zampini v->dim = PETSC_DETERMINE; 87435a35e8SMatthew G Knepley { 88435a35e8SMatthew G Knepley PetscInt i; 89435a35e8SMatthew G Knepley for (i = 0; i < 10; ++i) { 900298fd71SBarry Smith v->nullspaceConstructors[i] = NULL; 91f9d4088aSMatthew G. Knepley v->nearnullspaceConstructors[i] = NULL; 92435a35e8SMatthew G Knepley } 93435a35e8SMatthew G Knepley } 949566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 959566063dSJacob Faibussowitsch PetscCall(DMSetRegionDS(v, NULL, NULL, ds)); 969566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 979566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxCreate(&v->auxData)); 9814f150ffSMatthew G. Knepley v->dmBC = NULL; 99a8fb8f29SToby Isaac v->coarseMesh = NULL; 100f4d763aaSMatthew G. Knepley v->outputSequenceNum = -1; 101cdb7a50dSMatthew G. Knepley v->outputSequenceVal = 0.0; 1029566063dSJacob Faibussowitsch PetscCall(DMSetVecType(v, VECSTANDARD)); 1039566063dSJacob Faibussowitsch PetscCall(DMSetMatType(v, MATAIJ)); 1044a7a4c06SLawrence Mitchell 1051411c6eeSJed Brown *dm = v; 106a4121054SBarry Smith PetscFunctionReturn(0); 107a4121054SBarry Smith } 108a4121054SBarry Smith 10938221697SMatthew G. Knepley /*@ 110bb7acecfSBarry Smith DMClone - Creates a `DM` object with the same topology as the original. 11138221697SMatthew G. Knepley 112d083f849SBarry Smith Collective 11338221697SMatthew G. Knepley 11438221697SMatthew G. Knepley Input Parameter: 115bb7acecfSBarry Smith . dm - The original `DM` object 11638221697SMatthew G. Knepley 11738221697SMatthew G. Knepley Output Parameter: 118bb7acecfSBarry Smith . newdm - The new `DM` object 11938221697SMatthew G. Knepley 12038221697SMatthew G. Knepley Level: beginner 12138221697SMatthew G. Knepley 1221cb8cacdSPatrick Sanan Notes: 123bb7acecfSBarry Smith For some `DM` implementations this is a shallow clone, the result of which may share (reference counted) information with its parent. For example, 124bb7acecfSBarry Smith `DMClone()` applied to a `DMPLEX` object will result in a new `DMPLEX` that shares the topology with the original `DMPLEX`. It does not 125bb7acecfSBarry Smith share the `PetscSection` of the original `DM`. 1261bb6d2a8SBarry Smith 127bb7acecfSBarry Smith The clone is considered set up if the original has been set up. 12889706ed2SPatrick Sanan 129bb7acecfSBarry Smith Use `DMConvert()` for a general way to create new `DM` from a given `DM` 130bb7acecfSBarry Smith 131bb7acecfSBarry Smith .seealso: `DMDestroy()`, `DMCreate()`, `DMSetType()`, `DMSetLocalSection()`, `DMSetGlobalSection()`, `DMPLEX`, `DMSetType()`, `DMConvert()` 13238221697SMatthew G. Knepley @*/ 133d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClone(DM dm, DM *newdm) 134d71ae5a4SJacob Faibussowitsch { 13538221697SMatthew G. Knepley PetscSF sf; 13638221697SMatthew G. Knepley Vec coords; 13738221697SMatthew G. Knepley void *ctx; 1386858538eSMatthew G. Knepley PetscInt dim, cdim, i; 13938221697SMatthew G. Knepley 14038221697SMatthew G. Knepley PetscFunctionBegin; 14138221697SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14238221697SMatthew G. Knepley PetscValidPointer(newdm, 2); 1439566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), newdm)); 1449566063dSJacob Faibussowitsch PetscCall(DMCopyLabels(dm, *newdm, PETSC_COPY_VALUES, PETSC_TRUE, DM_COPY_LABELS_FAIL)); 145ddf8437dSMatthew G. Knepley (*newdm)->leveldown = dm->leveldown; 146ddf8437dSMatthew G. Knepley (*newdm)->levelup = dm->levelup; 147c8a6034eSMark (*newdm)->prealloc_only = dm->prealloc_only; 1489566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->vectype)); 1499566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*newdm)->vectype)); 1509566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->mattype)); 1519566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*newdm)->mattype)); 1529566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 1539566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*newdm, dim)); 154dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, clone, newdm); 1553f22bcbcSToby Isaac (*newdm)->setupcalled = dm->setupcalled; 1569566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 1579566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*newdm, sf)); 1589566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dm, &ctx)); 1599566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(*newdm, ctx)); 1606858538eSMatthew G. Knepley for (i = 0; i < 2; ++i) { 1616858538eSMatthew G. Knepley if (dm->coordinates[i].dm) { 162be4c1c3eSMatthew G. Knepley DM ncdm; 163be4c1c3eSMatthew G. Knepley PetscSection cs; 1645a0206caSToby Isaac PetscInt pEnd = -1, pEndMax = -1; 165be4c1c3eSMatthew G. Knepley 1666858538eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm->coordinates[i].dm, &cs)); 1679566063dSJacob Faibussowitsch if (cs) PetscCall(PetscSectionGetChart(cs, NULL, &pEnd)); 1689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(&pEnd, &pEndMax, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 1695a0206caSToby Isaac if (pEndMax >= 0) { 1706858538eSMatthew G. Knepley PetscCall(DMClone(dm->coordinates[i].dm, &ncdm)); 1716858538eSMatthew G. Knepley PetscCall(DMCopyDisc(dm->coordinates[i].dm, ncdm)); 1729566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(ncdm, cs)); 1736858538eSMatthew G. Knepley if (i) PetscCall(DMSetCellCoordinateDM(*newdm, ncdm)); 1746858538eSMatthew G. Knepley else PetscCall(DMSetCoordinateDM(*newdm, ncdm)); 1759566063dSJacob Faibussowitsch PetscCall(DMDestroy(&ncdm)); 176be4c1c3eSMatthew G. Knepley } 177be4c1c3eSMatthew G. Knepley } 1786858538eSMatthew G. Knepley } 1799566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 1809566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*newdm, cdim)); 1819566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coords)); 18238221697SMatthew G. Knepley if (coords) { 1839566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(*newdm, coords)); 18438221697SMatthew G. Knepley } else { 1859566063dSJacob Faibussowitsch PetscCall(DMGetCoordinates(dm, &coords)); 1869566063dSJacob Faibussowitsch if (coords) PetscCall(DMSetCoordinates(*newdm, coords)); 18738221697SMatthew G. Knepley } 1886858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinatesLocal(dm, &coords)); 1896858538eSMatthew G. Knepley if (coords) { 1906858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinatesLocal(*newdm, coords)); 1916858538eSMatthew G. Knepley } else { 1926858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinates(dm, &coords)); 1936858538eSMatthew G. Knepley if (coords) PetscCall(DMSetCellCoordinates(*newdm, coords)); 1946858538eSMatthew G. Knepley } 19590b157c4SStefano Zampini { 1964fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 1976858538eSMatthew G. Knepley 1984fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 1994fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*newdm, maxCell, Lstart, L)); 200c6b900c6SMatthew G. Knepley } 20134aa8a36SMatthew G. Knepley { 20234aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 20334aa8a36SMatthew G. Knepley 2049566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, &useCone, &useClosure)); 2059566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(*newdm, PETSC_DEFAULT, useCone, useClosure)); 20634aa8a36SMatthew G. Knepley } 20738221697SMatthew G. Knepley PetscFunctionReturn(0); 20838221697SMatthew G. Knepley } 20938221697SMatthew G. Knepley 2109a42bb27SBarry Smith /*@C 211bb7acecfSBarry Smith DMSetVecType - Sets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 2129a42bb27SBarry Smith 213d083f849SBarry Smith Logically Collective on da 2149a42bb27SBarry Smith 215147403d9SBarry Smith Input Parameters: 2169a42bb27SBarry Smith + da - initial distributed array 217bb7acecfSBarry Smith - ctype - the vector type, for example `VECSTANDARD`, `VECCUDA`, or `VECVIENNACL` 2189a42bb27SBarry Smith 2199a42bb27SBarry Smith Options Database: 220147403d9SBarry Smith . -dm_vec_type ctype - the type of vector to create 2219a42bb27SBarry Smith 2229a42bb27SBarry Smith Level: intermediate 2239a42bb27SBarry Smith 224bb7acecfSBarry Smith .seealso: `DMCreate()`, `DMDestroy()`, `DM`, `DMDAInterpolationType`, `VecType`, `DMGetVecType()`, `DMSetMatType()`, `DMGetMatType()`, 225bb7acecfSBarry Smith `VECSTANDARD`, `VECCUDA`, `VECVIENNACL`, `DMCreateLocalVector()`, `DMCreateGlobalVector()` 2269a42bb27SBarry Smith @*/ 227d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVecType(DM da, VecType ctype) 228d71ae5a4SJacob Faibussowitsch { 2299a42bb27SBarry Smith PetscFunctionBegin; 2309a42bb27SBarry Smith PetscValidHeaderSpecific(da, DM_CLASSID, 1); 2319566063dSJacob Faibussowitsch PetscCall(PetscFree(da->vectype)); 2329566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(ctype, (char **)&da->vectype)); 2339a42bb27SBarry Smith PetscFunctionReturn(0); 2349a42bb27SBarry Smith } 2359a42bb27SBarry Smith 236c0dedaeaSBarry Smith /*@C 237bb7acecfSBarry Smith DMGetVecType - Gets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 238c0dedaeaSBarry Smith 239d083f849SBarry Smith Logically Collective on da 240c0dedaeaSBarry Smith 241c0dedaeaSBarry Smith Input Parameter: 242c0dedaeaSBarry Smith . da - initial distributed array 243c0dedaeaSBarry Smith 244c0dedaeaSBarry Smith Output Parameter: 245c0dedaeaSBarry Smith . ctype - the vector type 246c0dedaeaSBarry Smith 247c0dedaeaSBarry Smith Level: intermediate 248c0dedaeaSBarry Smith 249db781477SPatrick Sanan .seealso: `DMCreate()`, `DMDestroy()`, `DM`, `DMDAInterpolationType`, `VecType`, `DMSetMatType()`, `DMGetMatType()`, `DMSetVecType()` 250c0dedaeaSBarry Smith @*/ 251d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetVecType(DM da, VecType *ctype) 252d71ae5a4SJacob Faibussowitsch { 253c0dedaeaSBarry Smith PetscFunctionBegin; 254c0dedaeaSBarry Smith PetscValidHeaderSpecific(da, DM_CLASSID, 1); 255c0dedaeaSBarry Smith *ctype = da->vectype; 256c0dedaeaSBarry Smith PetscFunctionReturn(0); 257c0dedaeaSBarry Smith } 258c0dedaeaSBarry Smith 2595f1ad066SMatthew G Knepley /*@ 260bb7acecfSBarry Smith VecGetDM - Gets the `DM` defining the data layout of the vector 2615f1ad066SMatthew G Knepley 2625f1ad066SMatthew G Knepley Not collective 2635f1ad066SMatthew G Knepley 2645f1ad066SMatthew G Knepley Input Parameter: 265bb7acecfSBarry Smith . v - The `Vec` 2665f1ad066SMatthew G Knepley 2675f1ad066SMatthew G Knepley Output Parameter: 268bb7acecfSBarry Smith . dm - The `DM` 2695f1ad066SMatthew G Knepley 2705f1ad066SMatthew G Knepley Level: intermediate 2715f1ad066SMatthew G Knepley 272bb7acecfSBarry Smith Note: 273bb7acecfSBarry Smith A `Vec` may not have a `DM` associated with it. 274bb7acecfSBarry Smith 275bb7acecfSBarry Smith .seealso: `DM`, `VecSetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 2765f1ad066SMatthew G Knepley @*/ 277d71ae5a4SJacob Faibussowitsch PetscErrorCode VecGetDM(Vec v, DM *dm) 278d71ae5a4SJacob Faibussowitsch { 2795f1ad066SMatthew G Knepley PetscFunctionBegin; 2805f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 2815f1ad066SMatthew G Knepley PetscValidPointer(dm, 2); 2829566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)v, "__PETSc_dm", (PetscObject *)dm)); 2835f1ad066SMatthew G Knepley PetscFunctionReturn(0); 2845f1ad066SMatthew G Knepley } 2855f1ad066SMatthew G Knepley 2865f1ad066SMatthew G Knepley /*@ 287bb7acecfSBarry Smith VecSetDM - Sets the `DM` defining the data layout of the vector. 2885f1ad066SMatthew G Knepley 2895f1ad066SMatthew G Knepley Not collective 2905f1ad066SMatthew G Knepley 2915f1ad066SMatthew G Knepley Input Parameters: 292bb7acecfSBarry Smith + v - The `Vec` 293bb7acecfSBarry Smith - dm - The `DM` 2945f1ad066SMatthew G Knepley 295bb7acecfSBarry Smith Note: 296bb7acecfSBarry Smith This is rarely used, generally one uses `DMGetLocalVector()` or `DMGetGlobalVector()` to create a vector associated with a given `DM` 297d9805387SMatthew G. Knepley 298bb7acecfSBarry Smith This is NOT the same as `DMCreateGlobalVector()` since it does not change the view methods or perform other customization, but merely sets the `DM` member. 299bb7acecfSBarry Smith 300bb7acecfSBarry Smith Level: developer 3015f1ad066SMatthew G Knepley 302db781477SPatrick Sanan .seealso: `VecGetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 3035f1ad066SMatthew G Knepley @*/ 304d71ae5a4SJacob Faibussowitsch PetscErrorCode VecSetDM(Vec v, DM dm) 305d71ae5a4SJacob Faibussowitsch { 3065f1ad066SMatthew G Knepley PetscFunctionBegin; 3075f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 308d7f50e27SLisandro Dalcin if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 3099566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)v, "__PETSc_dm", (PetscObject)dm)); 3105f1ad066SMatthew G Knepley PetscFunctionReturn(0); 3115f1ad066SMatthew G Knepley } 3125f1ad066SMatthew G Knepley 313521d9a4cSLisandro Dalcin /*@C 314bb7acecfSBarry Smith DMSetISColoringType - Sets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 3158f1509bcSBarry Smith 316d083f849SBarry Smith Logically Collective on dm 3178f1509bcSBarry Smith 3188f1509bcSBarry Smith Input Parameters: 319bb7acecfSBarry Smith + dm - the `DM` context 3208f1509bcSBarry Smith - ctype - the matrix type 3218f1509bcSBarry Smith 3228f1509bcSBarry Smith Options Database: 3238f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3248f1509bcSBarry Smith 3258f1509bcSBarry Smith Level: intermediate 3268f1509bcSBarry Smith 327db781477SPatrick Sanan .seealso: `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 328bb7acecfSBarry Smith `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3298f1509bcSBarry Smith @*/ 330d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetISColoringType(DM dm, ISColoringType ctype) 331d71ae5a4SJacob Faibussowitsch { 3328f1509bcSBarry Smith PetscFunctionBegin; 3338f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3348f1509bcSBarry Smith dm->coloringtype = ctype; 3358f1509bcSBarry Smith PetscFunctionReturn(0); 3368f1509bcSBarry Smith } 3378f1509bcSBarry Smith 3388f1509bcSBarry Smith /*@C 339bb7acecfSBarry Smith DMGetISColoringType - Gets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 340521d9a4cSLisandro Dalcin 341d083f849SBarry Smith Logically Collective on dm 342521d9a4cSLisandro Dalcin 343521d9a4cSLisandro Dalcin Input Parameter: 344bb7acecfSBarry Smith . dm - the `DM` context 3458f1509bcSBarry Smith 3468f1509bcSBarry Smith Output Parameter: 3478f1509bcSBarry Smith . ctype - the matrix type 3488f1509bcSBarry Smith 3498f1509bcSBarry Smith Options Database: 3508f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3518f1509bcSBarry Smith 3528f1509bcSBarry Smith Level: intermediate 3538f1509bcSBarry Smith 354db781477SPatrick Sanan .seealso: `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 355bb7acecfSBarry Smith `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3568f1509bcSBarry Smith @*/ 357d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetISColoringType(DM dm, ISColoringType *ctype) 358d71ae5a4SJacob Faibussowitsch { 3598f1509bcSBarry Smith PetscFunctionBegin; 3608f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3618f1509bcSBarry Smith *ctype = dm->coloringtype; 3628f1509bcSBarry Smith PetscFunctionReturn(0); 3638f1509bcSBarry Smith } 3648f1509bcSBarry Smith 3658f1509bcSBarry Smith /*@C 366bb7acecfSBarry Smith DMSetMatType - Sets the type of matrix created with `DMCreateMatrix()` 3678f1509bcSBarry Smith 368d083f849SBarry Smith Logically Collective on dm 3698f1509bcSBarry Smith 3708f1509bcSBarry Smith Input Parameters: 371bb7acecfSBarry Smith + dm - the `DM` context 372bb7acecfSBarry Smith - ctype - the matrix type, for example `MATMPIAIJ` 373521d9a4cSLisandro Dalcin 374521d9a4cSLisandro Dalcin Options Database: 375bb7acecfSBarry Smith . -dm_mat_type ctype - the type of the matrix to create, for example mpiaij 376521d9a4cSLisandro Dalcin 377521d9a4cSLisandro Dalcin Level: intermediate 378521d9a4cSLisandro Dalcin 379bb7acecfSBarry Smith .seealso: `MatType`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, `DMSetMatType()`, `DMGetMatType()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()` 380521d9a4cSLisandro Dalcin @*/ 381d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatType(DM dm, MatType ctype) 382d71ae5a4SJacob Faibussowitsch { 383521d9a4cSLisandro Dalcin PetscFunctionBegin; 384521d9a4cSLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3859566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->mattype)); 3869566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(ctype, (char **)&dm->mattype)); 387521d9a4cSLisandro Dalcin PetscFunctionReturn(0); 388521d9a4cSLisandro Dalcin } 389521d9a4cSLisandro Dalcin 390c0dedaeaSBarry Smith /*@C 391bb7acecfSBarry Smith DMGetMatType - Gets the type of matrix created with `DMCreateMatrix()` 392c0dedaeaSBarry Smith 393d083f849SBarry Smith Logically Collective on dm 394c0dedaeaSBarry Smith 395c0dedaeaSBarry Smith Input Parameter: 396bb7acecfSBarry Smith . dm - the `DM` context 397c0dedaeaSBarry Smith 398c0dedaeaSBarry Smith Output Parameter: 399c0dedaeaSBarry Smith . ctype - the matrix type 400c0dedaeaSBarry Smith 401c0dedaeaSBarry Smith Level: intermediate 402c0dedaeaSBarry Smith 403db781477SPatrick Sanan .seealso: `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMSetMatType()`, `DMSetMatType()`, `DMGetMatType()` 404c0dedaeaSBarry Smith @*/ 405d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetMatType(DM dm, MatType *ctype) 406d71ae5a4SJacob Faibussowitsch { 407c0dedaeaSBarry Smith PetscFunctionBegin; 408c0dedaeaSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 409c0dedaeaSBarry Smith *ctype = dm->mattype; 410c0dedaeaSBarry Smith PetscFunctionReturn(0); 411c0dedaeaSBarry Smith } 412c0dedaeaSBarry Smith 413c688c046SMatthew G Knepley /*@ 414bb7acecfSBarry Smith MatGetDM - Gets the `DM` defining the data layout of the matrix 415c688c046SMatthew G Knepley 416c688c046SMatthew G Knepley Not collective 417c688c046SMatthew G Knepley 418c688c046SMatthew G Knepley Input Parameter: 419bb7acecfSBarry Smith . A - The `Mat` 420c688c046SMatthew G Knepley 421c688c046SMatthew G Knepley Output Parameter: 422bb7acecfSBarry Smith . dm - The `DM` 423c688c046SMatthew G Knepley 424c688c046SMatthew G Knepley Level: intermediate 425c688c046SMatthew G Knepley 426bb7acecfSBarry Smith Note: 427bb7acecfSBarry Smith A matrix may not have a `DM` associated with it 428bb7acecfSBarry Smith 429bb7acecfSBarry Smith Developer Note: 430bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with the `Mat` through a `PetscObjectCompose()` operation 4318f1509bcSBarry Smith 432db781477SPatrick Sanan .seealso: `MatSetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 433c688c046SMatthew G Knepley @*/ 434d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDM(Mat A, DM *dm) 435d71ae5a4SJacob Faibussowitsch { 436c688c046SMatthew G Knepley PetscFunctionBegin; 437c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 438c688c046SMatthew G Knepley PetscValidPointer(dm, 2); 4399566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_dm", (PetscObject *)dm)); 440c688c046SMatthew G Knepley PetscFunctionReturn(0); 441c688c046SMatthew G Knepley } 442c688c046SMatthew G Knepley 443c688c046SMatthew G Knepley /*@ 444bb7acecfSBarry Smith MatSetDM - Sets the `DM` defining the data layout of the matrix 445c688c046SMatthew G Knepley 446c688c046SMatthew G Knepley Not collective 447c688c046SMatthew G Knepley 448c688c046SMatthew G Knepley Input Parameters: 449c688c046SMatthew G Knepley + A - The Mat 450c688c046SMatthew G Knepley - dm - The DM 451c688c046SMatthew G Knepley 452bb7acecfSBarry Smith Level: developer 453c688c046SMatthew G Knepley 454bb7acecfSBarry Smith Note: 455bb7acecfSBarry Smith This is rarely used in practice, rather `DMCreateMatrix()` is used to create a matrix associated with a particular `DM` 456bb7acecfSBarry Smith 457bb7acecfSBarry Smith Developer Note: 458bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with 459bb7acecfSBarry Smith the `Mat` through a `PetscObjectCompose()` operation 4608f1509bcSBarry Smith 461db781477SPatrick Sanan .seealso: `MatGetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 462c688c046SMatthew G Knepley @*/ 463d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetDM(Mat A, DM dm) 464d71ae5a4SJacob Faibussowitsch { 465c688c046SMatthew G Knepley PetscFunctionBegin; 466c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4678865f1eaSKarl Rupp if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 4689566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_dm", (PetscObject)dm)); 469c688c046SMatthew G Knepley PetscFunctionReturn(0); 470c688c046SMatthew G Knepley } 471c688c046SMatthew G Knepley 4729a42bb27SBarry Smith /*@C 473bb7acecfSBarry Smith DMSetOptionsPrefix - Sets the prefix prepended to all option names when searching through the options database 4749a42bb27SBarry Smith 475d083f849SBarry Smith Logically Collective on dm 4769a42bb27SBarry Smith 477d8d19677SJose E. Roman Input Parameters: 478bb7acecfSBarry Smith + da - the `DM` context 479bb7acecfSBarry Smith - prefix - the prefix to prepend 4809a42bb27SBarry Smith 4819a42bb27SBarry Smith Notes: 4829a42bb27SBarry Smith A hyphen (-) must NOT be given at the beginning of the prefix name. 4839a42bb27SBarry Smith The first character of all runtime options is AUTOMATICALLY the hyphen. 4849a42bb27SBarry Smith 4859a42bb27SBarry Smith Level: advanced 4869a42bb27SBarry Smith 487bb7acecfSBarry Smith .seealso: `PetscObjectSetOptionsPrefix()`, `DMSetFromOptions()` 4889a42bb27SBarry Smith @*/ 489d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOptionsPrefix(DM dm, const char prefix[]) 490d71ae5a4SJacob Faibussowitsch { 4919a42bb27SBarry Smith PetscFunctionBegin; 4929a42bb27SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4939566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, prefix)); 4941baa6e33SBarry Smith if (dm->sf) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sf, prefix)); 4951baa6e33SBarry Smith if (dm->sectionSF) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sectionSF, prefix)); 4969a42bb27SBarry Smith PetscFunctionReturn(0); 4979a42bb27SBarry Smith } 4989a42bb27SBarry Smith 49931697293SDave May /*@C 500bb7acecfSBarry Smith DMAppendOptionsPrefix - Appends an additional string to an already exising prefix used for searching for 501bb7acecfSBarry Smith `DM` options in the options database. 50231697293SDave May 503d083f849SBarry Smith Logically Collective on dm 50431697293SDave May 50531697293SDave May Input Parameters: 506bb7acecfSBarry Smith + dm - the `DM` context 507bb7acecfSBarry Smith - prefix - the string to append to the current prefix 50831697293SDave May 50931697293SDave May Notes: 510bb7acecfSBarry Smith If the `DM` does not currently have an options prefix then this value is used alone as the prefix as if `DMSetOptionsPrefix()` had been called. 51131697293SDave May A hyphen (-) must NOT be given at the beginning of the prefix name. 51231697293SDave May The first character of all runtime options is AUTOMATICALLY the hyphen. 51331697293SDave May 51431697293SDave May Level: advanced 51531697293SDave May 516bb7acecfSBarry Smith .seealso: `DMSetOptionsPrefix()`, `DMGetOptionsPrefix()`, `PetscObjectAppendOptionsPrefix()`, `DMSetFromOptions()` 51731697293SDave May @*/ 518d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAppendOptionsPrefix(DM dm, const char prefix[]) 519d71ae5a4SJacob Faibussowitsch { 52031697293SDave May PetscFunctionBegin; 52131697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5229566063dSJacob Faibussowitsch PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, prefix)); 52331697293SDave May PetscFunctionReturn(0); 52431697293SDave May } 52531697293SDave May 52631697293SDave May /*@C 52731697293SDave May DMGetOptionsPrefix - Gets the prefix used for searching for all 528bb7acecfSBarry Smith DM options in the options database. 52931697293SDave May 53031697293SDave May Not Collective 53131697293SDave May 53231697293SDave May Input Parameters: 533bb7acecfSBarry Smith . dm - the `DM` context 53431697293SDave May 53531697293SDave May Output Parameters: 53631697293SDave May . prefix - pointer to the prefix string used is returned 53731697293SDave May 538bb7acecfSBarry Smith Fortran Note: 53995452b02SPatrick Sanan On the fortran side, the user should pass in a string 'prefix' of 54031697293SDave May sufficient length to hold the prefix. 54131697293SDave May 54231697293SDave May Level: advanced 54331697293SDave May 544bb7acecfSBarry Smith .seealso: `DMSetOptionsPrefix()`, `DMAppendOptionsPrefix()`, `DMSetFromOptions()` 54531697293SDave May @*/ 546d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOptionsPrefix(DM dm, const char *prefix[]) 547d71ae5a4SJacob Faibussowitsch { 54831697293SDave May PetscFunctionBegin; 54931697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5509566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, prefix)); 55131697293SDave May PetscFunctionReturn(0); 55231697293SDave May } 55331697293SDave May 55462e5d2d2SJDBetteridge static PetscErrorCode DMCountNonCyclicReferences_Internal(DM dm, PetscBool recurseCoarse, PetscBool recurseFine, PetscInt *ncrefct) 555d71ae5a4SJacob Faibussowitsch { 5566eb26441SStefano Zampini PetscInt refct = ((PetscObject)dm)->refct; 55788bdff64SToby Isaac 55888bdff64SToby Isaac PetscFunctionBegin; 559aab5bcd8SJed Brown *ncrefct = 0; 56088bdff64SToby Isaac if (dm->coarseMesh && dm->coarseMesh->fineMesh == dm) { 56188bdff64SToby Isaac refct--; 56288bdff64SToby Isaac if (recurseCoarse) { 56388bdff64SToby Isaac PetscInt coarseCount; 56488bdff64SToby Isaac 56562e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->coarseMesh, PETSC_TRUE, PETSC_FALSE, &coarseCount)); 56688bdff64SToby Isaac refct += coarseCount; 56788bdff64SToby Isaac } 56888bdff64SToby Isaac } 56988bdff64SToby Isaac if (dm->fineMesh && dm->fineMesh->coarseMesh == dm) { 57088bdff64SToby Isaac refct--; 57188bdff64SToby Isaac if (recurseFine) { 57288bdff64SToby Isaac PetscInt fineCount; 57388bdff64SToby Isaac 57462e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->fineMesh, PETSC_FALSE, PETSC_TRUE, &fineCount)); 57588bdff64SToby Isaac refct += fineCount; 57688bdff64SToby Isaac } 57788bdff64SToby Isaac } 57888bdff64SToby Isaac *ncrefct = refct; 57988bdff64SToby Isaac PetscFunctionReturn(0); 58088bdff64SToby Isaac } 58188bdff64SToby Isaac 58262e5d2d2SJDBetteridge /* Generic wrapper for DMCountNonCyclicReferences_Internal() */ 58362e5d2d2SJDBetteridge PetscErrorCode DMCountNonCyclicReferences(PetscObject dm, PetscInt *ncrefct) 58462e5d2d2SJDBetteridge { 58562e5d2d2SJDBetteridge PetscFunctionBegin; 58662e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal((DM)dm, PETSC_TRUE, PETSC_TRUE, ncrefct)); 58762e5d2d2SJDBetteridge PetscFunctionReturn(0); 58862e5d2d2SJDBetteridge } 58962e5d2d2SJDBetteridge 590d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyLabelLinkList_Internal(DM dm) 591d71ae5a4SJacob Faibussowitsch { 5925d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 593354557abSToby Isaac 594354557abSToby Isaac PetscFunctionBegin; 595354557abSToby Isaac /* destroy the labels */ 596354557abSToby Isaac while (next) { 597354557abSToby Isaac DMLabelLink tmp = next->next; 598354557abSToby Isaac 5995d80c0bfSVaclav Hapla if (next->label == dm->depthLabel) dm->depthLabel = NULL; 600ba2698f1SMatthew G. Knepley if (next->label == dm->celltypeLabel) dm->celltypeLabel = NULL; 6019566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 6029566063dSJacob Faibussowitsch PetscCall(PetscFree(next)); 603354557abSToby Isaac next = tmp; 604354557abSToby Isaac } 6055d80c0bfSVaclav Hapla dm->labels = NULL; 606354557abSToby Isaac PetscFunctionReturn(0); 607354557abSToby Isaac } 608354557abSToby Isaac 609d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyCoordinates_Private(DMCoordinates *c) 610d71ae5a4SJacob Faibussowitsch { 6116858538eSMatthew G. Knepley PetscFunctionBegin; 6126858538eSMatthew G. Knepley c->dim = PETSC_DEFAULT; 6136858538eSMatthew G. Knepley PetscCall(DMDestroy(&c->dm)); 6146858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->x)); 6156858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->xl)); 6166858538eSMatthew G. Knepley PetscCall(DMFieldDestroy(&c->field)); 6176858538eSMatthew G. Knepley PetscFunctionReturn(0); 6186858538eSMatthew G. Knepley } 6196858538eSMatthew G. Knepley 6201fb7b255SJunchao Zhang /*@C 621bb7acecfSBarry Smith DMDestroy - Destroys a `DM`. 62247c6ae99SBarry Smith 623d083f849SBarry Smith Collective on dm 62447c6ae99SBarry Smith 62547c6ae99SBarry Smith Input Parameter: 626bb7acecfSBarry Smith . dm - the `DM` object to destroy 62747c6ae99SBarry Smith 62847c6ae99SBarry Smith Level: developer 62947c6ae99SBarry Smith 630bb7acecfSBarry Smith .seealso: `DMCreate()`, `DMType`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 63147c6ae99SBarry Smith @*/ 632d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroy(DM *dm) 633d71ae5a4SJacob Faibussowitsch { 6346eb26441SStefano Zampini PetscInt cnt; 635dfe15315SJed Brown DMNamedVecLink nlink, nnext; 63647c6ae99SBarry Smith 63747c6ae99SBarry Smith PetscFunctionBegin; 6386bf464f9SBarry Smith if (!*dm) PetscFunctionReturn(0); 6396bf464f9SBarry Smith PetscValidHeaderSpecific((*dm), DM_CLASSID, 1); 64087e657c6SBarry Smith 64188bdff64SToby Isaac /* count all non-cyclic references in the doubly-linked list of coarse<->fine meshes */ 64262e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(*dm, PETSC_TRUE, PETSC_TRUE, &cnt)); 64388bdff64SToby Isaac --((PetscObject)(*dm))->refct; 6449371c9d4SSatish Balay if (--cnt > 0) { 6459371c9d4SSatish Balay *dm = NULL; 6469371c9d4SSatish Balay PetscFunctionReturn(0); 6479371c9d4SSatish Balay } 6486bf464f9SBarry Smith if (((PetscObject)(*dm))->refct < 0) PetscFunctionReturn(0); 6496bf464f9SBarry Smith ((PetscObject)(*dm))->refct = 0; 6506eb26441SStefano Zampini 6519566063dSJacob Faibussowitsch PetscCall(DMClearGlobalVectors(*dm)); 6529566063dSJacob Faibussowitsch PetscCall(DMClearLocalVectors(*dm)); 6536eb26441SStefano Zampini 654f490541aSPeter Brune nnext = (*dm)->namedglobal; 6550298fd71SBarry Smith (*dm)->namedglobal = NULL; 656f490541aSPeter Brune for (nlink = nnext; nlink; nlink = nnext) { /* Destroy the named vectors */ 6572348bcf4SPeter Brune nnext = nlink->next; 6587a8be351SBarry Smith PetscCheck(nlink->status == DMVEC_STATUS_IN, ((PetscObject)*dm)->comm, PETSC_ERR_ARG_WRONGSTATE, "DM still has Vec named '%s' checked out", nlink->name); 6599566063dSJacob Faibussowitsch PetscCall(PetscFree(nlink->name)); 6609566063dSJacob Faibussowitsch PetscCall(VecDestroy(&nlink->X)); 6619566063dSJacob Faibussowitsch PetscCall(PetscFree(nlink)); 6622348bcf4SPeter Brune } 663f490541aSPeter Brune nnext = (*dm)->namedlocal; 6640298fd71SBarry Smith (*dm)->namedlocal = NULL; 665f490541aSPeter Brune for (nlink = nnext; nlink; nlink = nnext) { /* Destroy the named local vectors */ 666f490541aSPeter Brune nnext = nlink->next; 6677a8be351SBarry Smith PetscCheck(nlink->status == DMVEC_STATUS_IN, ((PetscObject)*dm)->comm, PETSC_ERR_ARG_WRONGSTATE, "DM still has Vec named '%s' checked out", nlink->name); 6689566063dSJacob Faibussowitsch PetscCall(PetscFree(nlink->name)); 6699566063dSJacob Faibussowitsch PetscCall(VecDestroy(&nlink->X)); 6709566063dSJacob Faibussowitsch PetscCall(PetscFree(nlink)); 671f490541aSPeter Brune } 6722348bcf4SPeter Brune 673b17ce1afSJed Brown /* Destroy the list of hooks */ 674c833c3b5SJed Brown { 675c833c3b5SJed Brown DMCoarsenHookLink link, next; 676b17ce1afSJed Brown for (link = (*dm)->coarsenhook; link; link = next) { 677b17ce1afSJed Brown next = link->next; 6789566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 679b17ce1afSJed Brown } 6800298fd71SBarry Smith (*dm)->coarsenhook = NULL; 681c833c3b5SJed Brown } 682c833c3b5SJed Brown { 683c833c3b5SJed Brown DMRefineHookLink link, next; 684c833c3b5SJed Brown for (link = (*dm)->refinehook; link; link = next) { 685c833c3b5SJed Brown next = link->next; 6869566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 687c833c3b5SJed Brown } 6880298fd71SBarry Smith (*dm)->refinehook = NULL; 689c833c3b5SJed Brown } 690be081cd6SPeter Brune { 691be081cd6SPeter Brune DMSubDomainHookLink link, next; 692be081cd6SPeter Brune for (link = (*dm)->subdomainhook; link; link = next) { 693be081cd6SPeter Brune next = link->next; 6949566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 695be081cd6SPeter Brune } 6960298fd71SBarry Smith (*dm)->subdomainhook = NULL; 697be081cd6SPeter Brune } 698baf369e7SPeter Brune { 699baf369e7SPeter Brune DMGlobalToLocalHookLink link, next; 700baf369e7SPeter Brune for (link = (*dm)->gtolhook; link; link = next) { 701baf369e7SPeter Brune next = link->next; 7029566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 703baf369e7SPeter Brune } 7040298fd71SBarry Smith (*dm)->gtolhook = NULL; 705baf369e7SPeter Brune } 706d4d07f1eSToby Isaac { 707d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, next; 708d4d07f1eSToby Isaac for (link = (*dm)->ltoghook; link; link = next) { 709d4d07f1eSToby Isaac next = link->next; 7109566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 711d4d07f1eSToby Isaac } 712d4d07f1eSToby Isaac (*dm)->ltoghook = NULL; 713d4d07f1eSToby Isaac } 714aa1993deSMatthew G Knepley /* Destroy the work arrays */ 715aa1993deSMatthew G Knepley { 716aa1993deSMatthew G Knepley DMWorkLink link, next; 7177a8be351SBarry Smith PetscCheck(!(*dm)->workout, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Work array still checked out"); 718aa1993deSMatthew G Knepley for (link = (*dm)->workin; link; link = next) { 719aa1993deSMatthew G Knepley next = link->next; 7209566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 7219566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 722aa1993deSMatthew G Knepley } 7230298fd71SBarry Smith (*dm)->workin = NULL; 724aa1993deSMatthew G Knepley } 725c58f1c22SToby Isaac /* destroy the labels */ 7269566063dSJacob Faibussowitsch PetscCall(DMDestroyLabelLinkList_Internal(*dm)); 727f4cdcedcSVaclav Hapla /* destroy the fields */ 7289566063dSJacob Faibussowitsch PetscCall(DMClearFields(*dm)); 729f4cdcedcSVaclav Hapla /* destroy the boundaries */ 730e6f8dbb6SToby Isaac { 731e6f8dbb6SToby Isaac DMBoundary next = (*dm)->boundary; 732e6f8dbb6SToby Isaac while (next) { 733e6f8dbb6SToby Isaac DMBoundary b = next; 734e6f8dbb6SToby Isaac 735e6f8dbb6SToby Isaac next = b->next; 7369566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 737e6f8dbb6SToby Isaac } 738e6f8dbb6SToby Isaac } 739b17ce1afSJed Brown 7409566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmksp)); 7419566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmsnes)); 7429566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmts)); 74352536dc3SBarry Smith 74448a46eb9SPierre Jolivet if ((*dm)->ctx && (*dm)->ctxdestroy) PetscCall((*(*dm)->ctxdestroy)(&(*dm)->ctx)); 7459566063dSJacob Faibussowitsch PetscCall(MatFDColoringDestroy(&(*dm)->fd)); 7469566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&(*dm)->ltogmap)); 7479566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->vectype)); 7489566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->mattype)); 74988ed4aceSMatthew G Knepley 7509566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->localSection)); 7519566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->globalSection)); 7529566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&(*dm)->map)); 7539566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->defaultConstraint.section)); 7549566063dSJacob Faibussowitsch PetscCall(MatDestroy(&(*dm)->defaultConstraint.mat)); 7559566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sf)); 7569566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sectionSF)); 757736995cdSBlaise Bourdin if ((*dm)->useNatural) { 75848a46eb9SPierre Jolivet if ((*dm)->sfNatural) PetscCall(PetscSFDestroy(&(*dm)->sfNatural)); 7599566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)(*dm)->sfMigration)); 760736995cdSBlaise Bourdin } 7619a2a23afSMatthew G. Knepley { 7629a2a23afSMatthew G. Knepley Vec *auxData; 7639a2a23afSMatthew G. Knepley PetscInt n, i, off = 0; 7649a2a23afSMatthew G. Knepley 7659566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetSize((*dm)->auxData, &n)); 7669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &auxData)); 7679566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetVals((*dm)->auxData, &off, auxData)); 7689566063dSJacob Faibussowitsch for (i = 0; i < n; ++i) PetscCall(VecDestroy(&auxData[i])); 7699566063dSJacob Faibussowitsch PetscCall(PetscFree(auxData)); 7709566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDestroy(&(*dm)->auxData)); 7719a2a23afSMatthew G. Knepley } 77248a46eb9SPierre Jolivet if ((*dm)->coarseMesh && (*dm)->coarseMesh->fineMesh == *dm) PetscCall(DMSetFineDM((*dm)->coarseMesh, NULL)); 7736eb26441SStefano Zampini 7749566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->coarseMesh)); 77548a46eb9SPierre Jolivet if ((*dm)->fineMesh && (*dm)->fineMesh->coarseMesh == *dm) PetscCall(DMSetCoarseDM((*dm)->fineMesh, NULL)); 7769566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->fineMesh)); 7774fb89dddSMatthew G. Knepley PetscCall(PetscFree((*dm)->Lstart)); 7789566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->L)); 7799566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->maxCell)); 7806858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[0])); 7816858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[1])); 7829566063dSJacob Faibussowitsch if ((*dm)->transformDestroy) PetscCall((*(*dm)->transformDestroy)(*dm, (*dm)->transformCtx)); 7839566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->transformDM)); 7849566063dSJacob Faibussowitsch PetscCall(VecDestroy(&(*dm)->transform)); 7856725e60dSJed Brown PetscCall(VecScatterDestroy(&(*dm)->periodic.affine_to_local)); 7866725e60dSJed Brown PetscCall(VecDestroy(&(*dm)->periodic.affine)); 7876636e97aSMatthew G Knepley 7889566063dSJacob Faibussowitsch PetscCall(DMClearDS(*dm)); 7899566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->dmBC)); 790e04113cfSBarry Smith /* if memory was published with SAWs then destroy it */ 7919566063dSJacob Faibussowitsch PetscCall(PetscObjectSAWsViewOff((PetscObject)*dm)); 792732e2eb9SMatthew G Knepley 79348a46eb9SPierre Jolivet if ((*dm)->ops->destroy) PetscCall((*(*dm)->ops->destroy)(*dm)); 7949566063dSJacob Faibussowitsch PetscCall(DMMonitorCancel(*dm)); 795f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 7969566063dSJacob Faibussowitsch PetscCallCEED(CeedElemRestrictionDestroy(&(*dm)->ceedERestrict)); 7979566063dSJacob Faibussowitsch PetscCallCEED(CeedDestroy(&(*dm)->ceed)); 798f918ec44SMatthew G. Knepley #endif 799435a35e8SMatthew G Knepley /* We do not destroy (*dm)->data here so that we can reference count backend objects */ 8009566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(dm)); 80147c6ae99SBarry Smith PetscFunctionReturn(0); 80247c6ae99SBarry Smith } 80347c6ae99SBarry Smith 804d7bf68aeSBarry Smith /*@ 805bb7acecfSBarry Smith DMSetUp - sets up the data structures inside a `DM` object 806d7bf68aeSBarry Smith 807d083f849SBarry Smith Collective on dm 808d7bf68aeSBarry Smith 809d7bf68aeSBarry Smith Input Parameter: 810bb7acecfSBarry Smith . dm - the `DM` object to setup 811d7bf68aeSBarry Smith 812bb7acecfSBarry Smith Level: intermediate 813d7bf68aeSBarry Smith 814bb7acecfSBarry Smith Note: 815bb7acecfSBarry Smith This is usually called after various parameter setting operations and `DMSetFromOptions()` are called on the `DM` 816bb7acecfSBarry Smith 817bb7acecfSBarry Smith .seealso: `DM`, `DMCreate()`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 818d7bf68aeSBarry Smith @*/ 819d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUp(DM dm) 820d71ae5a4SJacob Faibussowitsch { 821d7bf68aeSBarry Smith PetscFunctionBegin; 822171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8238387afaaSJed Brown if (dm->setupcalled) PetscFunctionReturn(0); 824dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setup); 8258387afaaSJed Brown dm->setupcalled = PETSC_TRUE; 826d7bf68aeSBarry Smith PetscFunctionReturn(0); 827d7bf68aeSBarry Smith } 828d7bf68aeSBarry Smith 829d7bf68aeSBarry Smith /*@ 830bb7acecfSBarry Smith DMSetFromOptions - sets parameters in a `DM` from the options database 831d7bf68aeSBarry Smith 832d083f849SBarry Smith Collective on dm 833d7bf68aeSBarry Smith 834d7bf68aeSBarry Smith Input Parameter: 835bb7acecfSBarry Smith . dm - the `DM` object to set options for 836d7bf68aeSBarry Smith 837732e2eb9SMatthew G Knepley Options Database: 838bb7acecfSBarry Smith + -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 839bb7acecfSBarry Smith . -dm_vec_type <type> - type of vector to create inside `DM` 840bb7acecfSBarry Smith . -dm_mat_type <type> - type of matrix to create inside `DM` 841a4ea9b21SRichard Tran Mills . -dm_is_coloring_type - <global or local> 842bb7acecfSBarry Smith - -dm_bind_below <n> - bind (force execution on CPU) for `Vec` and `Mat` objects with local size (number of vector entries or matrix rows) below n; currently only supported for `DMDA` 843732e2eb9SMatthew G Knepley 8449318fe57SMatthew G. Knepley DMPLEX Specific creation options 8459318fe57SMatthew G. Knepley + -dm_plex_filename <str> - File containing a mesh 8469318fe57SMatthew G. Knepley . -dm_plex_boundary_filename <str> - File containing a mesh boundary 847cd7e8a5eSksagiyam . -dm_plex_name <str> - Name of the mesh in the file 8485dca41c3SJed Brown . -dm_plex_shape <shape> - The domain shape, such as `BOX`, `SPHERE`, etc. 8499318fe57SMatthew G. Knepley . -dm_plex_cell <ct> - Cell shape 8509318fe57SMatthew G. Knepley . -dm_plex_reference_cell_domain <bool> - Use a reference cell domain 8519318fe57SMatthew G. Knepley . -dm_plex_dim <dim> - Set the topological dimension 852bb7acecfSBarry Smith . -dm_plex_simplex <bool> - `PETSC_TRUE` for simplex elements, `PETSC_FALSE` for tensor elements 853bb7acecfSBarry Smith . -dm_plex_interpolate <bool> - `PETSC_TRUE` turns on topological interpolation (creating edges and faces) 8549318fe57SMatthew G. Knepley . -dm_plex_scale <sc> - Scale factor for mesh coordinates 8559318fe57SMatthew G. Knepley . -dm_plex_box_faces <m,n,p> - Number of faces along each dimension 8569318fe57SMatthew G. Knepley . -dm_plex_box_lower <x,y,z> - Specify lower-left-bottom coordinates for the box 8579318fe57SMatthew G. Knepley . -dm_plex_box_upper <x,y,z> - Specify upper-right-top coordinates for the box 858bb7acecfSBarry Smith . -dm_plex_box_bd <bx,by,bz> - Specify the `DMBoundaryType `for each direction 8599318fe57SMatthew G. Knepley . -dm_plex_sphere_radius <r> - The sphere radius 8609318fe57SMatthew G. Knepley . -dm_plex_ball_radius <r> - Radius of the ball 8619318fe57SMatthew G. Knepley . -dm_plex_cylinder_bd <bz> - Boundary type in the z direction 8629318fe57SMatthew G. Knepley . -dm_plex_cylinder_num_wedges <n> - Number of wedges around the cylinder 863bdf63967SMatthew G. Knepley . -dm_plex_reorder <order> - Reorder the mesh using the specified algorithm 8649318fe57SMatthew G. Knepley . -dm_refine_pre <n> - The number of refinements before distribution 8659318fe57SMatthew G. Knepley . -dm_refine_uniform_pre <bool> - Flag for uniform refinement before distribution 8669318fe57SMatthew G. Knepley . -dm_refine_volume_limit_pre <v> - The maximum cell volume after refinement before distribution 8679318fe57SMatthew G. Knepley . -dm_refine <n> - The number of refinements after distribution 868bdf63967SMatthew G. Knepley . -dm_extrude <l> - Activate extrusion and specify the number of layers to extrude 869d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thickness <t> - The total thickness of extruded layers 870d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_use_tensor <bool> - Use tensor cells when extruding 871d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_symmetric <bool> - Extrude layers symmetrically about the surface 872d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_normal <n0,...,nd> - Specify the extrusion direction 873d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thicknesses <t0,...,tl> - Specify thickness of each layer 874909dfd52SMatthew G. Knepley . -dm_plex_create_fv_ghost_cells - Flag to create finite volume ghost cells on the boundary 875909dfd52SMatthew G. Knepley . -dm_plex_fv_ghost_cells_label <name> - Label name for ghost cells boundary 8769318fe57SMatthew G. Knepley . -dm_distribute <bool> - Flag to redistribute a mesh among processes 8779318fe57SMatthew G. Knepley . -dm_distribute_overlap <n> - The size of the overlap halo 8789318fe57SMatthew G. Knepley . -dm_plex_adj_cone <bool> - Set adjacency direction 8799318fe57SMatthew G. Knepley - -dm_plex_adj_closure <bool> - Set adjacency size 8809318fe57SMatthew G. Knepley 881384a6580SVaclav Hapla DMPLEX Specific Checks 882bb7acecfSBarry Smith + -dm_plex_check_symmetry - Check that the adjacency information in the mesh is symmetric - `DMPlexCheckSymmetry()` 883bb7acecfSBarry Smith . -dm_plex_check_skeleton - Check that each cell has the correct number of vertices (only for homogeneous simplex or tensor meshes) - `DMPlexCheckSkeleton()` 884bb7acecfSBarry Smith . -dm_plex_check_faces - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type - `DMPlexCheckFaces()` 885bb7acecfSBarry Smith . -dm_plex_check_geometry - Check that cells have positive volume - `DMPlexCheckGeometry()` 886bb7acecfSBarry Smith . -dm_plex_check_pointsf - Check some necessary conditions for `PointSF` - `DMPlexCheckPointSF()` 887bb7acecfSBarry Smith . -dm_plex_check_interface_cones - Check points on inter-partition interfaces have conforming order of cone points - `DMPlexCheckInterfaceCones()` 888384a6580SVaclav Hapla - -dm_plex_check_all - Perform all the checks above 889d7bf68aeSBarry Smith 89095eb5ee5SVaclav Hapla Level: intermediate 89195eb5ee5SVaclav Hapla 892bb7acecfSBarry Smith .seealso: `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 893bb7acecfSBarry Smith `DMPlexCheckSymmetry()`, `DMPlexCheckSkeleton()`, `DMPlexCheckFaces()`, `DMPlexCheckGeometry()`, `DMPlexCheckPointSF()`, `DMPlexCheckInterfaceCones()`, 894bb7acecfSBarry Smith `DMSetOptionsPrefix()`, `DM`, `DMType`, `DMPLEX`, `DMDA` 895d7bf68aeSBarry Smith @*/ 896d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFromOptions(DM dm) 897d71ae5a4SJacob Faibussowitsch { 8987781c08eSBarry Smith char typeName[256]; 899ca266f36SBarry Smith PetscBool flg; 900d7bf68aeSBarry Smith 901d7bf68aeSBarry Smith PetscFunctionBegin; 902171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 90349be4549SMatthew G. Knepley dm->setfromoptionscalled = PETSC_TRUE; 9049566063dSJacob Faibussowitsch if (dm->sf) PetscCall(PetscSFSetFromOptions(dm->sf)); 9059566063dSJacob Faibussowitsch if (dm->sectionSF) PetscCall(PetscSFSetFromOptions(dm->sectionSF)); 906dd4c3f67SMatthew G. Knepley if (dm->coordinates[0].dm) PetscCall(DMSetFromOptions(dm->coordinates[0].dm)); 907d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)dm); 9089566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_preallocate_only", "only preallocate matrix, but do not set column indices", "DMSetMatrixPreallocateOnly", dm->prealloc_only, &dm->prealloc_only, NULL)); 9099566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_vec_type", "Vector type used for created vectors", "DMSetVecType", VecList, dm->vectype, typeName, 256, &flg)); 9101baa6e33SBarry Smith if (flg) PetscCall(DMSetVecType(dm, typeName)); 9119566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_mat_type", "Matrix type used for created matrices", "DMSetMatType", MatList, dm->mattype ? dm->mattype : typeName, typeName, sizeof(typeName), &flg)); 9121baa6e33SBarry Smith if (flg) PetscCall(DMSetMatType(dm, typeName)); 913*863027abSJed Brown PetscCall(PetscOptionsEnum("-dm_blocking_type", "Topological point or field node blocking", "DMSetBlockingType", DMBlockingTypes, (PetscEnum)dm->blocking_type, (PetscEnum *)&dm->blocking_type, NULL)); 9149566063dSJacob Faibussowitsch PetscCall(PetscOptionsEnum("-dm_is_coloring_type", "Global or local coloring of Jacobian", "DMSetISColoringType", ISColoringTypes, (PetscEnum)dm->coloringtype, (PetscEnum *)&dm->coloringtype, NULL)); 9159566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-dm_bind_below", "Set the size threshold (in entries) below which the Vec is bound to the CPU", "VecBindToCPU", dm->bind_below, &dm->bind_below, &flg)); 916dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setfromoptions, PetscOptionsObject); 917f9ba7244SBarry Smith /* process any options handlers added with PetscObjectAddOptionsHandler() */ 918dbbe0bcdSBarry Smith PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)dm, PetscOptionsObject)); 919d0609cedSBarry Smith PetscOptionsEnd(); 920d7bf68aeSBarry Smith PetscFunctionReturn(0); 921d7bf68aeSBarry Smith } 922d7bf68aeSBarry Smith 923fc9bc008SSatish Balay /*@C 924bb7acecfSBarry Smith DMViewFromOptions - View a `DM` in a particular way based on a request in the options database 925fe2efc57SMark 926bb7acecfSBarry Smith Collective on dm 927fe2efc57SMark 928fe2efc57SMark Input Parameters: 929bb7acecfSBarry Smith + dm - the `DM` object 930bb7acecfSBarry Smith . obj - optional object that provides the prefix for the options database (if NULL then the prefix in obj is used) 931bb7acecfSBarry Smith - optionname - option string that is used to activate viewing 932fe2efc57SMark 933fe2efc57SMark Level: intermediate 934bb7acecfSBarry Smith 935bb7acecfSBarry Smith Note: 936bb7acecfSBarry Smith See `PetscObjectViewFromOptions()` for a list of values that can be provided in the options database to determine how the `DM` is viewed 937bb7acecfSBarry Smith 938bb7acecfSBarry Smith .seealso: `DM`, `DMView()`, `PetscObjectViewFromOptions()`, `DMCreate()`, `PetscObjectViewFromOptions()` 939fe2efc57SMark @*/ 940d71ae5a4SJacob Faibussowitsch PetscErrorCode DMViewFromOptions(DM dm, PetscObject obj, const char name[]) 941d71ae5a4SJacob Faibussowitsch { 942fe2efc57SMark PetscFunctionBegin; 943fe2efc57SMark PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9449566063dSJacob Faibussowitsch PetscCall(PetscObjectViewFromOptions((PetscObject)dm, obj, name)); 945fe2efc57SMark PetscFunctionReturn(0); 946fe2efc57SMark } 947fe2efc57SMark 948fe2efc57SMark /*@C 949bb7acecfSBarry Smith DMView - Views a `DM`. Depending on the `PetscViewer` and its `PetscViewerFormat` it may print some ASCII information about the `DM` to the screen or a file or 950bb7acecfSBarry Smith save the `DM` in a binary file to be loaded later or create a visualization of the `DM` 95147c6ae99SBarry Smith 952d083f849SBarry Smith Collective on dm 95347c6ae99SBarry Smith 954d8d19677SJose E. Roman Input Parameters: 955bb7acecfSBarry Smith + dm - the `DM` object to view 95647c6ae99SBarry Smith - v - the viewer 95747c6ae99SBarry Smith 958cd7e8a5eSksagiyam Notes: 959bb7acecfSBarry Smith Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` as the `PetscViewerFormat` one can save multiple `DMPLEX` 960bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 961bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 962cd7e8a5eSksagiyam 963224748a4SBarry Smith Level: beginner 96447c6ae99SBarry Smith 965bb7acecfSBarry Smith .seealso: `PetscViewer`, `PetscViewerFormat`, `PetscViewerSetFormat`(), `DMDestroy()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMLoad()`, `PetscObjectSetName()` 96647c6ae99SBarry Smith 96747c6ae99SBarry Smith @*/ 968d71ae5a4SJacob Faibussowitsch PetscErrorCode DMView(DM dm, PetscViewer v) 969d71ae5a4SJacob Faibussowitsch { 97032c0f0efSBarry Smith PetscBool isbinary; 97176a8abe0SBarry Smith PetscMPIInt size; 97276a8abe0SBarry Smith PetscViewerFormat format; 97347c6ae99SBarry Smith 97447c6ae99SBarry Smith PetscFunctionBegin; 975171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 97648a46eb9SPierre Jolivet if (!v) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &v)); 977b1b135c8SBarry Smith PetscValidHeaderSpecific(v, PETSC_VIEWER_CLASSID, 2); 97874903a4fSStefano Zampini /* Ideally, we would like to have this test on. 97974903a4fSStefano Zampini However, it currently breaks socket viz via GLVis. 98074903a4fSStefano Zampini During DMView(parallel_mesh,glvis_viewer), each 98174903a4fSStefano Zampini process opens a sequential ASCII socket to visualize 98274903a4fSStefano Zampini the local mesh, and PetscObjectView(dm,local_socket) 98374903a4fSStefano Zampini is internally called inside VecView_GLVis, incurring 98474903a4fSStefano Zampini in an error here */ 98574903a4fSStefano Zampini /* PetscCheckSameComm(dm,1,v,2); */ 9869566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckWritable(v)); 987b1b135c8SBarry Smith 9889566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(v, &format)); 9899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 99076a8abe0SBarry Smith if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(0); 9919566063dSJacob Faibussowitsch PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)dm, v)); 9929566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)v, PETSCVIEWERBINARY, &isbinary)); 99332c0f0efSBarry Smith if (isbinary) { 99455849f57SBarry Smith PetscInt classid = DM_FILE_CLASSID; 99532c0f0efSBarry Smith char type[256]; 99632c0f0efSBarry Smith 9979566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, &classid, 1, PETSC_INT)); 9989566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(type, ((PetscObject)dm)->type_name, 256)); 9999566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, type, 256, PETSC_CHAR)); 100032c0f0efSBarry Smith } 1001dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, view, v); 100247c6ae99SBarry Smith PetscFunctionReturn(0); 100347c6ae99SBarry Smith } 100447c6ae99SBarry Smith 100547c6ae99SBarry Smith /*@ 1006bb7acecfSBarry Smith DMCreateGlobalVector - Creates a global vector from a `DM` object. A global vector is a parallel vector that has no duplicate values shared between MPI ranks, 1007bb7acecfSBarry Smith that is it has no ghost locations. 100847c6ae99SBarry Smith 1009d083f849SBarry Smith Collective on dm 101047c6ae99SBarry Smith 101147c6ae99SBarry Smith Input Parameter: 1012bb7acecfSBarry Smith . dm - the `DM` object 101347c6ae99SBarry Smith 101447c6ae99SBarry Smith Output Parameter: 101547c6ae99SBarry Smith . vec - the global vector 101647c6ae99SBarry Smith 1017073dac72SJed Brown Level: beginner 101847c6ae99SBarry Smith 1019bb7acecfSBarry Smith .seealso: `Vec`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1020bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 102147c6ae99SBarry Smith @*/ 1022d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateGlobalVector(DM dm, Vec *vec) 1023d71ae5a4SJacob Faibussowitsch { 102447c6ae99SBarry Smith PetscFunctionBegin; 1025171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1026b9d85ea2SLisandro Dalcin PetscValidPointer(vec, 2); 1027dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createglobalvector, vec); 102876bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1029c6b011d8SStefano Zampini DM vdm; 1030c6b011d8SStefano Zampini 10319566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10327a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1033c6b011d8SStefano Zampini } 103447c6ae99SBarry Smith PetscFunctionReturn(0); 103547c6ae99SBarry Smith } 103647c6ae99SBarry Smith 103747c6ae99SBarry Smith /*@ 1038bb7acecfSBarry Smith DMCreateLocalVector - Creates a local vector from a `DM` object. 103947c6ae99SBarry Smith 104047c6ae99SBarry Smith Not Collective 104147c6ae99SBarry Smith 104247c6ae99SBarry Smith Input Parameter: 1043bb7acecfSBarry Smith . dm - the `DM` object 104447c6ae99SBarry Smith 104547c6ae99SBarry Smith Output Parameter: 104647c6ae99SBarry Smith . vec - the local vector 104747c6ae99SBarry Smith 1048073dac72SJed Brown Level: beginner 104947c6ae99SBarry Smith 1050bb7acecfSBarry Smith Notes: 1051bb7acecfSBarry Smith A local vector usually has ghost locations that contain values that are owned by different MPI ranks. A global vector has no ghost locations. 1052bb7acecfSBarry Smith 1053bb7acecfSBarry Smith .seealso: `Vec`, `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 1054bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 105547c6ae99SBarry Smith @*/ 1056d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLocalVector(DM dm, Vec *vec) 1057d71ae5a4SJacob Faibussowitsch { 105847c6ae99SBarry Smith PetscFunctionBegin; 1059171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1060b9d85ea2SLisandro Dalcin PetscValidPointer(vec, 2); 1061dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalvector, vec); 106276bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1063c6b011d8SStefano Zampini DM vdm; 1064c6b011d8SStefano Zampini 10659566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10667a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_LIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1067c6b011d8SStefano Zampini } 106847c6ae99SBarry Smith PetscFunctionReturn(0); 106947c6ae99SBarry Smith } 107047c6ae99SBarry Smith 10711411c6eeSJed Brown /*@ 1072bb7acecfSBarry Smith DMGetLocalToGlobalMapping - Accesses the local-to-global mapping in a `DM`. 10731411c6eeSJed Brown 1074d083f849SBarry Smith Collective on dm 10751411c6eeSJed Brown 10761411c6eeSJed Brown Input Parameter: 1077bb7acecfSBarry Smith . dm - the `DM` that provides the mapping 10781411c6eeSJed Brown 10791411c6eeSJed Brown Output Parameter: 10801411c6eeSJed Brown . ltog - the mapping 10811411c6eeSJed Brown 1082bb7acecfSBarry Smith Level: advanced 10831411c6eeSJed Brown 10841411c6eeSJed Brown Notes: 1085bb7acecfSBarry Smith The global to local mapping allows one to set values into the global vector or matrix using `VecSetValuesLocal()` and `MatSetValuesLocal()` 10861411c6eeSJed Brown 1087bb7acecfSBarry Smith Vectors obtained with `DMCreateGlobalVector()` and matrices obtained with `DMCreateMatrix()` already contain the global mapping so you do 1088bb7acecfSBarry Smith need to use this function with those objects. 1089bb7acecfSBarry Smith 1090bb7acecfSBarry Smith This mapping can then be used by `VecSetLocalToGlobalMapping()` or `MatSetLocalToGlobalMapping()`. 1091bb7acecfSBarry Smith 1092bb7acecfSBarry Smith .seealso: `DMCreateLocalVector()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `VecSetLocalToGlobalMapping()`, `MatSetLocalToGlobalMapping()`, 1093bb7acecfSBarry Smith `DMCreateMatrix()` 10941411c6eeSJed Brown @*/ 1095d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalToGlobalMapping(DM dm, ISLocalToGlobalMapping *ltog) 1096d71ae5a4SJacob Faibussowitsch { 10970be3e97aSMatthew G. Knepley PetscInt bs = -1, bsLocal[2], bsMinMax[2]; 10981411c6eeSJed Brown 10991411c6eeSJed Brown PetscFunctionBegin; 11001411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11011411c6eeSJed Brown PetscValidPointer(ltog, 2); 11021411c6eeSJed Brown if (!dm->ltogmap) { 110337d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 110437d0c07bSMatthew G Knepley 11059566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 110637d0c07bSMatthew G Knepley if (section) { 1107a974ec88SMatthew G. Knepley const PetscInt *cdofs; 110837d0c07bSMatthew G Knepley PetscInt *ltog; 1109ccf3bd66SMatthew G. Knepley PetscInt pStart, pEnd, n, p, k, l; 111037d0c07bSMatthew G Knepley 11119566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 11129566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 11139566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(section, &n)); 11149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, <og)); /* We want the local+overlap size */ 111537d0c07bSMatthew G Knepley for (p = pStart, l = 0; p < pEnd; ++p) { 1116e6befd46SJed Brown PetscInt bdof, cdof, dof, off, c, cind; 111737d0c07bSMatthew G Knepley 111837d0c07bSMatthew G Knepley /* Should probably use constrained dofs */ 11199566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, p, &dof)); 11209566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(section, p, &cdof)); 11219566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(section, p, &cdofs)); 11229566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &off)); 11231a7dc684SMatthew G. Knepley /* If you have dofs, and constraints, and they are unequal, we set the blocksize to 1 */ 11241a7dc684SMatthew G. Knepley bdof = cdof && (dof - cdof) ? 1 : dof; 1125ad540459SPierre Jolivet if (dof) bs = bs < 0 ? bdof : PetscGCD(bs, bdof); 11265227eafbSStefano Zampini 1127e6befd46SJed Brown for (c = 0, cind = 0; c < dof; ++c, ++l) { 11285227eafbSStefano Zampini if (cind < cdof && c == cdofs[cind]) { 1129e6befd46SJed Brown ltog[l] = off < 0 ? off - c : -(off + c + 1); 1130e6befd46SJed Brown cind++; 1131e6befd46SJed Brown } else { 11325227eafbSStefano Zampini ltog[l] = (off < 0 ? -(off + 1) : off) + c - cind; 1133e6befd46SJed Brown } 113437d0c07bSMatthew G Knepley } 113537d0c07bSMatthew G Knepley } 1136bff27382SMatthew G. Knepley /* Must have same blocksize on all procs (some might have no points) */ 11379371c9d4SSatish Balay bsLocal[0] = bs < 0 ? PETSC_MAX_INT : bs; 11389371c9d4SSatish Balay bsLocal[1] = bs; 11399566063dSJacob Faibussowitsch PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)dm), bsLocal, bsMinMax)); 11409371c9d4SSatish Balay if (bsMinMax[0] != bsMinMax[1]) { 11419371c9d4SSatish Balay bs = 1; 11429371c9d4SSatish Balay } else { 11439371c9d4SSatish Balay bs = bsMinMax[0]; 11449371c9d4SSatish Balay } 11457591dbb2SMatthew G. Knepley bs = bs < 0 ? 1 : bs; 11467591dbb2SMatthew G. Knepley /* Must reduce indices by blocksize */ 1147ccf3bd66SMatthew G. Knepley if (bs > 1) { 1148ca469d19SJed Brown for (l = 0, k = 0; l < n; l += bs, ++k) { 1149ca469d19SJed Brown // Integer division of negative values truncates toward zero(!), not toward negative infinity 1150ca469d19SJed Brown ltog[k] = ltog[l] >= 0 ? ltog[l] / bs : -(-(ltog[l] + 1) / bs + 1); 1151ca469d19SJed Brown } 1152ccf3bd66SMatthew G. Knepley n /= bs; 1153ccf3bd66SMatthew G. Knepley } 11549566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm), bs, n, ltog, PETSC_OWN_POINTER, &dm->ltogmap)); 1155dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, getlocaltoglobalmapping); 115637d0c07bSMatthew G Knepley } 11571411c6eeSJed Brown *ltog = dm->ltogmap; 11581411c6eeSJed Brown PetscFunctionReturn(0); 11591411c6eeSJed Brown } 11601411c6eeSJed Brown 11611411c6eeSJed Brown /*@ 1162bb7acecfSBarry Smith DMGetBlockSize - Gets the inherent block size associated with a `DM` 11631411c6eeSJed Brown 11641411c6eeSJed Brown Not Collective 11651411c6eeSJed Brown 11661411c6eeSJed Brown Input Parameter: 1167bb7acecfSBarry Smith . dm - the `DM` with block structure 11681411c6eeSJed Brown 11691411c6eeSJed Brown Output Parameter: 11701411c6eeSJed Brown . bs - the block size, 1 implies no exploitable block structure 11711411c6eeSJed Brown 11721411c6eeSJed Brown Level: intermediate 11731411c6eeSJed Brown 1174bb7acecfSBarry Smith Note: 1175bb7acecfSBarry Smith This might be the number of degrees of freedom at each grid point for a structured grid. 1176bb7acecfSBarry Smith 1177bb7acecfSBarry Smith Complex `DM` that represent multiphysics or staggered grids or mixed-methods do not generally have a single inherent block size, but 1178bb7acecfSBarry Smith rather different locations in the vectors may have a different block size. 1179bb7acecfSBarry Smith 1180db781477SPatrick Sanan .seealso: `ISCreateBlock()`, `VecSetBlockSize()`, `MatSetBlockSize()`, `DMGetLocalToGlobalMapping()` 11811411c6eeSJed Brown @*/ 1182d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBlockSize(DM dm, PetscInt *bs) 1183d71ae5a4SJacob Faibussowitsch { 11841411c6eeSJed Brown PetscFunctionBegin; 11851411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1186534a8f05SLisandro Dalcin PetscValidIntPointer(bs, 2); 11877a8be351SBarry Smith PetscCheck(dm->bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM does not have enough information to provide a block size yet"); 11881411c6eeSJed Brown *bs = dm->bs; 11891411c6eeSJed Brown PetscFunctionReturn(0); 11901411c6eeSJed Brown } 11911411c6eeSJed Brown 119248eeb7c8SBarry Smith /*@C 1193bb7acecfSBarry Smith DMCreateInterpolation - Gets the interpolation matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1194bb7acecfSBarry Smith `DMCreateGlobalVector()` on the coarse `DM` to similar vectors on the fine grid `DM`. 119547c6ae99SBarry Smith 1196a5bc1bf3SBarry Smith Collective on dmc 119747c6ae99SBarry Smith 1198d8d19677SJose E. Roman Input Parameters: 1199bb7acecfSBarry Smith + dmc - the `DM` object 1200bb7acecfSBarry Smith - dmf - the second, finer `DM` object 120147c6ae99SBarry Smith 1202d8d19677SJose E. Roman Output Parameters: 120347c6ae99SBarry Smith + mat - the interpolation 1204bb7acecfSBarry Smith - vec - the scaling (optional), see `DMCreateInterpolationScale()` 120547c6ae99SBarry Smith 120647c6ae99SBarry Smith Level: developer 120747c6ae99SBarry Smith 120895452b02SPatrick Sanan Notes: 1209bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1210bb7acecfSBarry Smith DMCoarsen(). The coordinates set into the `DMDA` are completely ignored in computing the interpolation. 1211d52bd9f3SBarry Smith 1212bb7acecfSBarry Smith For `DMDA` objects you can use this interpolation (more precisely the interpolation from the `DMGetCoordinateDM()`) to interpolate the mesh coordinate 1213bb7acecfSBarry Smith vectors EXCEPT in the periodic case where it does not make sense since the coordinate vectors are not periodic. 121485afcc9aSBarry Smith 1215bb7acecfSBarry Smith .seealso: `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolationScale()` 121647c6ae99SBarry Smith @*/ 1217d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolation(DM dmc, DM dmf, Mat *mat, Vec *vec) 1218d71ae5a4SJacob Faibussowitsch { 121947c6ae99SBarry Smith PetscFunctionBegin; 1220a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1221a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 1222c7d20fa0SStefano Zampini PetscValidPointer(mat, 3); 12239566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInterpolation, dmc, dmf, 0, 0)); 1224dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createinterpolation, dmf, mat, vec); 12259566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInterpolation, dmc, dmf, 0, 0)); 122647c6ae99SBarry Smith PetscFunctionReturn(0); 122747c6ae99SBarry Smith } 122847c6ae99SBarry Smith 12293ad4599aSBarry Smith /*@ 1230bb7acecfSBarry Smith DMCreateInterpolationScale - Forms L = 1/(R*1) where 1 is the vector of all ones, and R is the transpose of the interpolation between the `DM`. 1231bb7acecfSBarry Smith xcoarse = diag(L)*R*xfine preserves scale and is thus suitable for state (versus residual) restriction. In other words xcoarse is the coarse 1232bb7acecfSBarry Smith representation of xfine. 12332ed6491fSPatrick Sanan 12342ed6491fSPatrick Sanan Input Parameters: 1235bb7acecfSBarry Smith + dac - `DM` that defines a coarse mesh 1236bb7acecfSBarry Smith . daf - `DM` that defines a fine mesh 12372ed6491fSPatrick Sanan - mat - the restriction (or interpolation operator) from fine to coarse 12382ed6491fSPatrick Sanan 12392ed6491fSPatrick Sanan Output Parameter: 12402ed6491fSPatrick Sanan . scale - the scaled vector 12412ed6491fSPatrick Sanan 1242bb7acecfSBarry Smith Level: advanced 12432ed6491fSPatrick Sanan 1244e9c74fd6SRichard Tran Mills Developer Notes: 1245bb7acecfSBarry Smith If the fine-scale `DMDA` has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()` 1246e9c74fd6SRichard Tran Mills on the restriction/interpolation operator to set the bindingpropagates flag to true. 1247e9c74fd6SRichard Tran Mills 1248bb7acecfSBarry Smith .seealso: `MatRestrict()`, `MatInterpolate()`, `DMCreateInterpolation()`, DMCreateRestriction()`, `DMCreateGlobalVector()` 12492ed6491fSPatrick Sanan @*/ 1250d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolationScale(DM dac, DM daf, Mat mat, Vec *scale) 1251d71ae5a4SJacob Faibussowitsch { 12522ed6491fSPatrick Sanan Vec fine; 12532ed6491fSPatrick Sanan PetscScalar one = 1.0; 12549704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 1255e9c74fd6SRichard Tran Mills PetscBool bindingpropagates, isbound; 12569704db99SRichard Tran Mills #endif 12572ed6491fSPatrick Sanan 12582ed6491fSPatrick Sanan PetscFunctionBegin; 12599566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(daf, &fine)); 12609566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(dac, scale)); 12619566063dSJacob Faibussowitsch PetscCall(VecSet(fine, one)); 12629704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 12639704db99SRichard Tran Mills /* If the 'fine' Vec is bound to the CPU, it makes sense to bind 'mat' as well. 12649704db99SRichard Tran Mills * Note that we only do this for the CUDA case, right now, but if we add support for MatMultTranspose() via ViennaCL, 12659704db99SRichard Tran Mills * we'll need to do it for that case, too.*/ 12669566063dSJacob Faibussowitsch PetscCall(VecGetBindingPropagates(fine, &bindingpropagates)); 1267e9c74fd6SRichard Tran Mills if (bindingpropagates) { 12689566063dSJacob Faibussowitsch PetscCall(MatSetBindingPropagates(mat, PETSC_TRUE)); 12699566063dSJacob Faibussowitsch PetscCall(VecBoundToCPU(fine, &isbound)); 12709566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mat, isbound)); 127183aa49f4SRichard Tran Mills } 12729704db99SRichard Tran Mills #endif 12739566063dSJacob Faibussowitsch PetscCall(MatRestrict(mat, fine, *scale)); 12749566063dSJacob Faibussowitsch PetscCall(VecDestroy(&fine)); 12759566063dSJacob Faibussowitsch PetscCall(VecReciprocal(*scale)); 12762ed6491fSPatrick Sanan PetscFunctionReturn(0); 12772ed6491fSPatrick Sanan } 12782ed6491fSPatrick Sanan 12792ed6491fSPatrick Sanan /*@ 1280bb7acecfSBarry Smith DMCreateRestriction - Gets restriction matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1281bb7acecfSBarry Smith `DMCreateGlobalVector()` on the fine `DM` to similar vectors on the coarse grid `DM`. 12823ad4599aSBarry Smith 1283a5bc1bf3SBarry Smith Collective on dmc 12843ad4599aSBarry Smith 1285d8d19677SJose E. Roman Input Parameters: 1286bb7acecfSBarry Smith + dmc - the `DM` object 1287bb7acecfSBarry Smith - dmf - the second, finer `DM` object 12883ad4599aSBarry Smith 12893ad4599aSBarry Smith Output Parameter: 12903ad4599aSBarry Smith . mat - the restriction 12913ad4599aSBarry Smith 12923ad4599aSBarry Smith Level: developer 12933ad4599aSBarry Smith 1294bb7acecfSBarry Smith Note: 1295bb7acecfSBarry Smith This only works for `DMSTAG`. For many situations either the transpose of the operator obtained with `DMCreateInterpolation()` or that 1296bb7acecfSBarry Smith matrix multiplied by the vector obtained with `DMCreateInterpolationScale()` provides the desired object. 12973ad4599aSBarry Smith 1298bb7acecfSBarry Smith .seealso: `DMRestrict()`, `DMInterpolate()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateInterpolation()` 12993ad4599aSBarry Smith @*/ 1300d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateRestriction(DM dmc, DM dmf, Mat *mat) 1301d71ae5a4SJacob Faibussowitsch { 13023ad4599aSBarry Smith PetscFunctionBegin; 1303a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1304a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 13055a84ad33SLisandro Dalcin PetscValidPointer(mat, 3); 13069566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateRestriction, dmc, dmf, 0, 0)); 1307dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createrestriction, dmf, mat); 13089566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateRestriction, dmc, dmf, 0, 0)); 13093ad4599aSBarry Smith PetscFunctionReturn(0); 13103ad4599aSBarry Smith } 13113ad4599aSBarry Smith 131247c6ae99SBarry Smith /*@ 1313bb7acecfSBarry Smith DMCreateInjection - Gets injection matrix between two `DM` objects. This is an operator that applied to a vector obtained with 1314bb7acecfSBarry Smith `DMCreateGlobalVector()` on the fine grid maps the values to a vector on the vector on the coarse `DM` by simply selecting the values 1315bb7acecfSBarry Smith on the coarse grid points. This compares to the operator obtained by `DMCreateRestriction()` or the transpose of the operator obtained 1316bb7acecfSBarry Smith by `DMCreateInterpolation()` that uses a "local weighted average" of the values around the coarse grid point as the coarse grid value. 131747c6ae99SBarry Smith 1318a5bc1bf3SBarry Smith Collective on dac 131947c6ae99SBarry Smith 1320d8d19677SJose E. Roman Input Parameters: 1321bb7acecfSBarry Smith + dac - the `DM` object 1322bb7acecfSBarry Smith - daf - the second, finer `DM` object 132347c6ae99SBarry Smith 132447c6ae99SBarry Smith Output Parameter: 13256dbf9973SLawrence Mitchell . mat - the injection 132647c6ae99SBarry Smith 132747c6ae99SBarry Smith Level: developer 132847c6ae99SBarry Smith 1329bb7acecfSBarry Smith Note: 1330bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1331bb7acecfSBarry Smith `DMCoarsen()`. The coordinates set into the `DMDA` are completely ignored in computing the injection. 133285afcc9aSBarry Smith 1333bb7acecfSBarry Smith .seealso: `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateInterpolation()`, 1334bb7acecfSBarry Smith `DMCreateRestriction()`, `MatRestrict()`, `MatInterpolate()` 133547c6ae99SBarry Smith @*/ 1336d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInjection(DM dac, DM daf, Mat *mat) 1337d71ae5a4SJacob Faibussowitsch { 133847c6ae99SBarry Smith PetscFunctionBegin; 1339a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dac, DM_CLASSID, 1); 1340a5bc1bf3SBarry Smith PetscValidHeaderSpecific(daf, DM_CLASSID, 2); 13415a84ad33SLisandro Dalcin PetscValidPointer(mat, 3); 13429566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInjection, dac, daf, 0, 0)); 1343dbbe0bcdSBarry Smith PetscUseTypeMethod(dac, createinjection, daf, mat); 13449566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInjection, dac, daf, 0, 0)); 134547c6ae99SBarry Smith PetscFunctionReturn(0); 134647c6ae99SBarry Smith } 134747c6ae99SBarry Smith 1348b412c318SBarry Smith /*@ 1349bb7acecfSBarry Smith DMCreateMassMatrix - Gets the mass matrix between two `DM` objects, M_ij = \int \phi_i \psi_j where the \phi are Galerkin basis functions for a 1350bb7acecfSBarry Smith a Galerkin finite element model on the `DM` 1351bd041c0cSMatthew G. Knepley 1352a5bc1bf3SBarry Smith Collective on dac 1353bd041c0cSMatthew G. Knepley 1354d8d19677SJose E. Roman Input Parameters: 1355bb7acecfSBarry Smith + dmc - the target `DM` object 1356bb7acecfSBarry Smith - dmf - the source `DM` object 1357bd041c0cSMatthew G. Knepley 1358bd041c0cSMatthew G. Knepley Output Parameter: 1359b4937a87SMatthew G. Knepley . mat - the mass matrix 1360bd041c0cSMatthew G. Knepley 1361bd041c0cSMatthew G. Knepley Level: developer 1362bd041c0cSMatthew G. Knepley 1363bb7acecfSBarry Smith Notes: 1364bb7acecfSBarry Smith For `DMPLEX` the finite element model for the `DM` must have been already provided. 1365bb7acecfSBarry Smith 1366bb7acecfSBarry Smith if dmc is dmf then x^t M x is an approximation to the L2 norm of the vector x which is obtained by `DMCreateGlobalVector()` 1367bb7acecfSBarry Smith 1368bb7acecfSBarry Smith .seealso: `DMCreateMassMatrixLumped()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1369bd041c0cSMatthew G. Knepley @*/ 1370d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrix(DM dmc, DM dmf, Mat *mat) 1371d71ae5a4SJacob Faibussowitsch { 1372bd041c0cSMatthew G. Knepley PetscFunctionBegin; 1373b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1374b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 13755a84ad33SLisandro Dalcin PetscValidPointer(mat, 3); 13765b8ffe73SMark Adams PetscCall(PetscLogEventBegin(DM_CreateMassMatrix, 0, 0, 0, 0)); 1377dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createmassmatrix, dmf, mat); 13785b8ffe73SMark Adams PetscCall(PetscLogEventEnd(DM_CreateMassMatrix, 0, 0, 0, 0)); 1379b4937a87SMatthew G. Knepley PetscFunctionReturn(0); 1380b4937a87SMatthew G. Knepley } 1381b4937a87SMatthew G. Knepley 1382b4937a87SMatthew G. Knepley /*@ 1383bb7acecfSBarry Smith DMCreateMassMatrixLumped - Gets the lumped mass matrix for a given `DM` 1384b4937a87SMatthew G. Knepley 1385b4937a87SMatthew G. Knepley Collective on dm 1386b4937a87SMatthew G. Knepley 1387b4937a87SMatthew G. Knepley Input Parameter: 1388bb7acecfSBarry Smith . dm - the `DM` object 1389b4937a87SMatthew G. Knepley 1390b4937a87SMatthew G. Knepley Output Parameter: 1391bb7acecfSBarry Smith . lm - the lumped mass matrix, which is a diagonal matrix, represented as a vector 1392b4937a87SMatthew G. Knepley 1393b4937a87SMatthew G. Knepley Level: developer 1394b4937a87SMatthew G. Knepley 1395bb7acecfSBarry Smith Note: 1396bb7acecfSBarry Smith See `DMCreateMassMatrix()` for how to create the non-lumped version of the mass matrix. 1397bb7acecfSBarry Smith 1398bb7acecfSBarry Smith .seealso: `DMCreateMassMatrix()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1399b4937a87SMatthew G. Knepley @*/ 1400d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrixLumped(DM dm, Vec *lm) 1401d71ae5a4SJacob Faibussowitsch { 1402b4937a87SMatthew G. Knepley PetscFunctionBegin; 1403b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1404b4937a87SMatthew G. Knepley PetscValidPointer(lm, 2); 1405dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createmassmatrixlumped, lm); 1406bd041c0cSMatthew G. Knepley PetscFunctionReturn(0); 1407bd041c0cSMatthew G. Knepley } 1408bd041c0cSMatthew G. Knepley 1409bd041c0cSMatthew G. Knepley /*@ 1410bb7acecfSBarry Smith DMCreateColoring - Gets coloring of a graph associated with the `DM`. Often the graph represents the operator matrix associated with the discretization 1411bb7acecfSBarry Smith of a PDE on the `DM`. 141247c6ae99SBarry Smith 1413d083f849SBarry Smith Collective on dm 141447c6ae99SBarry Smith 1415d8d19677SJose E. Roman Input Parameters: 1416bb7acecfSBarry Smith + dm - the `DM` object 1417bb7acecfSBarry Smith - ctype - `IS_COLORING_LOCAL` or `IS_COLORING_GLOBAL` 141847c6ae99SBarry Smith 141947c6ae99SBarry Smith Output Parameter: 142047c6ae99SBarry Smith . coloring - the coloring 142147c6ae99SBarry Smith 1422ec5066bdSBarry Smith Notes: 1423bb7acecfSBarry Smith Coloring of matrices can also be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 1424bb7acecfSBarry Smith matrix comes from (what this function provides). In general using the mesh produces a more optimal coloring (fewer colors). 1425ec5066bdSBarry Smith 1426bb7acecfSBarry Smith This produces a coloring with the distance of 2, see `MatSetColoringDistance()` which can be used for efficiently computing Jacobians with `MatFDColoringCreate()` 1427ec5066bdSBarry Smith 142847c6ae99SBarry Smith Level: developer 142947c6ae99SBarry Smith 1430bb7acecfSBarry Smith .seealso: `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatType()`, `MatColoring`, `MatFDColoringCreate()` 1431aab9d709SJed Brown @*/ 1432d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateColoring(DM dm, ISColoringType ctype, ISColoring *coloring) 1433d71ae5a4SJacob Faibussowitsch { 143447c6ae99SBarry Smith PetscFunctionBegin; 1435171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14365a84ad33SLisandro Dalcin PetscValidPointer(coloring, 3); 1437dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getcoloring, ctype, coloring); 143847c6ae99SBarry Smith PetscFunctionReturn(0); 143947c6ae99SBarry Smith } 144047c6ae99SBarry Smith 1441b412c318SBarry Smith /*@ 1442bb7acecfSBarry Smith DMCreateMatrix - Gets an empty matrix for a `DM` that is most commonly used to store the Jacobian of a discrete PDE operator. 144347c6ae99SBarry Smith 1444d083f849SBarry Smith Collective on dm 144547c6ae99SBarry Smith 144647c6ae99SBarry Smith Input Parameter: 1447bb7acecfSBarry Smith . dm - the `DM` object 144847c6ae99SBarry Smith 144947c6ae99SBarry Smith Output Parameter: 145047c6ae99SBarry Smith . mat - the empty Jacobian 145147c6ae99SBarry Smith 1452073dac72SJed Brown Level: beginner 145347c6ae99SBarry Smith 1454f27dd7c6SMatthew G. Knepley Options Database Keys: 1455bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 1456f27dd7c6SMatthew G. Knepley 145795452b02SPatrick Sanan Notes: 145895452b02SPatrick Sanan This properly preallocates the number of nonzeros in the sparse matrix so you 145994013140SBarry Smith do not need to do it yourself. 146094013140SBarry Smith 146194013140SBarry Smith By default it also sets the nonzero structure and puts in the zero entries. To prevent setting 1462bb7acecfSBarry Smith the nonzero pattern call `DMSetMatrixPreallocateOnly()` 146394013140SBarry Smith 1464bb7acecfSBarry Smith For `DMDA`, when you call `MatView()` on this matrix it is displayed using the global natural ordering, NOT in the ordering used 146594013140SBarry Smith internally by PETSc. 146694013140SBarry Smith 1467bb7acecfSBarry Smith For `DMDA`, in general it is easiest to use `MatSetValuesStencil()` or `MatSetValuesLocal()` to put values into the matrix because 1468bb7acecfSBarry Smith `MatSetValues()` requires the indices for the global numbering for the `DMDA` which is complic`ated to compute 146994013140SBarry Smith 1470bb7acecfSBarry Smith .seealso: `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMSetMatType()`, `DMCreateMassMatrix()` 1471aab9d709SJed Brown @*/ 1472d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMatrix(DM dm, Mat *mat) 1473d71ae5a4SJacob Faibussowitsch { 147447c6ae99SBarry Smith PetscFunctionBegin; 1475171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1476064a246eSJacob Faibussowitsch PetscValidPointer(mat, 2); 14779566063dSJacob Faibussowitsch PetscCall(MatInitializePackage()); 14789566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateMatrix, 0, 0, 0, 0)); 1479dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, creatematrix, mat); 148076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1481c6b011d8SStefano Zampini DM mdm; 1482c6b011d8SStefano Zampini 14839566063dSJacob Faibussowitsch PetscCall(MatGetDM(*mat, &mdm)); 14847a8be351SBarry Smith PetscCheck(mdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the matrix", ((PetscObject)dm)->type_name); 1485c6b011d8SStefano Zampini } 1486e571a35bSMatthew G. Knepley /* Handle nullspace and near nullspace */ 1487e5e52638SMatthew G. Knepley if (dm->Nf) { 1488e571a35bSMatthew G. Knepley MatNullSpace nullSpace; 1489649ef022SMatthew Knepley PetscInt Nf, f; 1490e571a35bSMatthew G. Knepley 14919566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 1492649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1493649ef022SMatthew Knepley if (dm->nullspaceConstructors[f]) { 14949566063dSJacob Faibussowitsch PetscCall((*dm->nullspaceConstructors[f])(dm, f, f, &nullSpace)); 14959566063dSJacob Faibussowitsch PetscCall(MatSetNullSpace(*mat, nullSpace)); 14969566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1497649ef022SMatthew Knepley break; 1498e571a35bSMatthew G. Knepley } 1499649ef022SMatthew Knepley } 1500649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1501649ef022SMatthew Knepley if (dm->nearnullspaceConstructors[f]) { 15029566063dSJacob Faibussowitsch PetscCall((*dm->nearnullspaceConstructors[f])(dm, f, f, &nullSpace)); 15039566063dSJacob Faibussowitsch PetscCall(MatSetNearNullSpace(*mat, nullSpace)); 15049566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1505e571a35bSMatthew G. Knepley } 1506e571a35bSMatthew G. Knepley } 1507e571a35bSMatthew G. Knepley } 15089566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateMatrix, 0, 0, 0, 0)); 150947c6ae99SBarry Smith PetscFunctionReturn(0); 151047c6ae99SBarry Smith } 151147c6ae99SBarry Smith 1512732e2eb9SMatthew G Knepley /*@ 1513bb7acecfSBarry Smith DMSetMatrixPreallocateSkip - When `DMCreateMatrix()` is called the matrix sizes and `ISLocalToGlobalMapping` will be 1514bb7acecfSBarry Smith properly set, but the data structures to store values in the matrices will not be preallocated. This is most useful to reduce initialization costs when 1515bb7acecfSBarry Smith `MatSetPreallocationCOO()` and `MatSetValuesCOO()` will be used. 1516aa0f6e3cSJed Brown 1517aa0f6e3cSJed Brown Logically Collective on dm 1518aa0f6e3cSJed Brown 1519aa0f6e3cSJed Brown Input Parameters: 1520bb7acecfSBarry Smith + dm - the `DM` 1521bb7acecfSBarry Smith - skip - `PETSC_TRUE` to skip preallocation 1522aa0f6e3cSJed Brown 1523aa0f6e3cSJed Brown Level: developer 1524aa0f6e3cSJed Brown 1525bb7acecfSBarry Smith .seealso: `DMCreateMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateOnly()` 1526aa0f6e3cSJed Brown @*/ 1527d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateSkip(DM dm, PetscBool skip) 1528d71ae5a4SJacob Faibussowitsch { 1529aa0f6e3cSJed Brown PetscFunctionBegin; 1530aa0f6e3cSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1531aa0f6e3cSJed Brown dm->prealloc_skip = skip; 1532aa0f6e3cSJed Brown PetscFunctionReturn(0); 1533aa0f6e3cSJed Brown } 1534aa0f6e3cSJed Brown 1535aa0f6e3cSJed Brown /*@ 1536bb7acecfSBarry Smith DMSetMatrixPreallocateOnly - When `DMCreateMatrix()` is called the matrix will be properly 1537732e2eb9SMatthew G Knepley preallocated but the nonzero structure and zero values will not be set. 1538732e2eb9SMatthew G Knepley 1539d083f849SBarry Smith Logically Collective on dm 1540732e2eb9SMatthew G Knepley 1541d8d19677SJose E. Roman Input Parameters: 1542bb7acecfSBarry Smith + dm - the `DM` 1543bb7acecfSBarry Smith - only - `PETSC_TRUE` if only want preallocation 1544732e2eb9SMatthew G Knepley 1545732e2eb9SMatthew G Knepley Level: developer 1546f27dd7c6SMatthew G. Knepley 1547f27dd7c6SMatthew G. Knepley Options Database Keys: 1548bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()`, `DMCreateMassMatrix()`, but do not fill it with zeros 1549f27dd7c6SMatthew G. Knepley 1550bb7acecfSBarry Smith .seealso: `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateSkip()` 1551732e2eb9SMatthew G Knepley @*/ 1552d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateOnly(DM dm, PetscBool only) 1553d71ae5a4SJacob Faibussowitsch { 1554732e2eb9SMatthew G Knepley PetscFunctionBegin; 1555732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1556732e2eb9SMatthew G Knepley dm->prealloc_only = only; 1557732e2eb9SMatthew G Knepley PetscFunctionReturn(0); 1558732e2eb9SMatthew G Knepley } 1559732e2eb9SMatthew G Knepley 1560b06ff27eSHong Zhang /*@ 1561bb7acecfSBarry Smith DMSetMatrixStructureOnly - When `DMCreateMatrix()` is called, the matrix structure will be created 1562bb7acecfSBarry Smith but the array for numerical values will not be allocated. 1563b06ff27eSHong Zhang 1564d083f849SBarry Smith Logically Collective on dm 1565b06ff27eSHong Zhang 1566d8d19677SJose E. Roman Input Parameters: 1567bb7acecfSBarry Smith + dm - the `DM` 1568bb7acecfSBarry Smith - only - `PETSC_TRUE` if you only want matrix stucture 1569b06ff27eSHong Zhang 1570b06ff27eSHong Zhang Level: developer 1571bb7acecfSBarry Smith 1572bb7acecfSBarry Smith .seealso: `DMCreateMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMSetMatrixPreallocateSkip()` 1573b06ff27eSHong Zhang @*/ 1574d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixStructureOnly(DM dm, PetscBool only) 1575d71ae5a4SJacob Faibussowitsch { 1576b06ff27eSHong Zhang PetscFunctionBegin; 1577b06ff27eSHong Zhang PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1578b06ff27eSHong Zhang dm->structure_only = only; 1579b06ff27eSHong Zhang PetscFunctionReturn(0); 1580b06ff27eSHong Zhang } 1581b06ff27eSHong Zhang 1582*863027abSJed Brown /*@ 1583*863027abSJed Brown DMSetBlockingType - set the blocking granularity to be used for variable block size `DMCreateMatrix()` is called 1584*863027abSJed Brown 1585*863027abSJed Brown Logically Collective on dm 1586*863027abSJed Brown 1587*863027abSJed Brown Input Parameters: 1588*863027abSJed Brown + dm - the `DM` 1589*863027abSJed Brown - btype - block by topological point or field node 1590*863027abSJed Brown 1591*863027abSJed Brown Level: advanced 1592*863027abSJed Brown 1593*863027abSJed Brown Options Database Keys: 1594*863027abSJed Brown . -dm_blocking_type [point, field_node] - use topological point blocking or field node blocking 1595*863027abSJed Brown 1596*863027abSJed Brown .seealso: `DMCreateMatrix()`, `MatSetVariableBlockSizes()` 1597*863027abSJed Brown @*/ 1598*863027abSJed Brown PetscErrorCode DMSetBlockingType(DM dm, DMBlockingType btype) 1599*863027abSJed Brown { 1600*863027abSJed Brown PetscFunctionBegin; 1601*863027abSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1602*863027abSJed Brown dm->blocking_type = btype; 1603*863027abSJed Brown PetscFunctionReturn(0); 1604*863027abSJed Brown } 1605*863027abSJed Brown 1606*863027abSJed Brown /*@ 1607*863027abSJed Brown DMGetBlockingType - get the blocking granularity to be used for variable block size `DMCreateMatrix()` is called 1608*863027abSJed Brown 1609*863027abSJed Brown Not Collective 1610*863027abSJed Brown 1611*863027abSJed Brown Input Parameters: 1612*863027abSJed Brown . dm - the `DM` 1613*863027abSJed Brown 1614*863027abSJed Brown Output Parameters: 1615*863027abSJed Brown . btype - block by topological point or field node 1616*863027abSJed Brown 1617*863027abSJed Brown Level: advanced 1618*863027abSJed Brown 1619*863027abSJed Brown .seealso: `DMCreateMatrix()`, `MatSetVariableBlockSizes()` 1620*863027abSJed Brown @*/ 1621*863027abSJed Brown PetscErrorCode DMGetBlockingType(DM dm, DMBlockingType *btype) 1622*863027abSJed Brown { 1623*863027abSJed Brown PetscFunctionBegin; 1624*863027abSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1625*863027abSJed Brown PetscValidPointer(btype, 2); 1626*863027abSJed Brown *btype = dm->blocking_type; 1627*863027abSJed Brown PetscFunctionReturn(0); 1628*863027abSJed Brown } 1629*863027abSJed Brown 1630a89ea682SMatthew G Knepley /*@C 1631bb7acecfSBarry Smith DMGetWorkArray - Gets a work array guaranteed to be at least the input size, restore with `DMRestoreWorkArray()` 1632a89ea682SMatthew G Knepley 1633a89ea682SMatthew G Knepley Not Collective 1634a89ea682SMatthew G Knepley 1635a89ea682SMatthew G Knepley Input Parameters: 1636bb7acecfSBarry Smith + dm - the `DM` object 1637a5b23f4aSJose E. Roman . count - The minimum size 1638bb7acecfSBarry Smith - dtype - MPI data type, often MPIU_REAL, MPIU_SCALAR, or MPIU_INT) 1639a89ea682SMatthew G Knepley 1640a89ea682SMatthew G Knepley Output Parameter: 1641a89ea682SMatthew G Knepley . array - the work array 1642a89ea682SMatthew G Knepley 1643a89ea682SMatthew G Knepley Level: developer 1644a89ea682SMatthew G Knepley 1645bb7acecfSBarry Smith Note: 1646bb7acecfSBarry Smith A `DM` may stash the array between instantations so using this routine may be more efficient than calling `PetscMalloc()` 1647bb7acecfSBarry Smith 1648bb7acecfSBarry Smith The array may contain nonzero values 1649bb7acecfSBarry Smith 1650bb7acecfSBarry Smith .seealso: `DMDestroy()`, `DMCreate()`, `DMRestoreWorkArray()`, `PetscMalloc()` 1651a89ea682SMatthew G Knepley @*/ 1652d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1653d71ae5a4SJacob Faibussowitsch { 1654aa1993deSMatthew G Knepley DMWorkLink link; 165569291d52SBarry Smith PetscMPIInt dsize; 1656a89ea682SMatthew G Knepley 1657a89ea682SMatthew G Knepley PetscFunctionBegin; 1658a89ea682SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1659aa1993deSMatthew G Knepley PetscValidPointer(mem, 4); 1660aa1993deSMatthew G Knepley if (dm->workin) { 1661aa1993deSMatthew G Knepley link = dm->workin; 1662aa1993deSMatthew G Knepley dm->workin = dm->workin->next; 1663aa1993deSMatthew G Knepley } else { 16644dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&link)); 1665a89ea682SMatthew G Knepley } 16669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_size(dtype, &dsize)); 16675056fcd2SBarry Smith if (((size_t)dsize * count) > link->bytes) { 16689566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 16699566063dSJacob Faibussowitsch PetscCall(PetscMalloc(dsize * count, &link->mem)); 1670854ce69bSBarry Smith link->bytes = dsize * count; 1671aa1993deSMatthew G Knepley } 1672aa1993deSMatthew G Knepley link->next = dm->workout; 1673aa1993deSMatthew G Knepley dm->workout = link; 1674cea3dcb8SSatish Balay #if defined(__MEMCHECK_H) && (defined(PLAT_amd64_linux) || defined(PLAT_x86_linux) || defined(PLAT_amd64_darwin)) 167500d952a4SJed Brown VALGRIND_MAKE_MEM_NOACCESS((char *)link->mem + (size_t)dsize * count, link->bytes - (size_t)dsize * count); 167600d952a4SJed Brown VALGRIND_MAKE_MEM_UNDEFINED(link->mem, (size_t)dsize * count); 167700d952a4SJed Brown #endif 1678aa1993deSMatthew G Knepley *(void **)mem = link->mem; 1679a89ea682SMatthew G Knepley PetscFunctionReturn(0); 1680a89ea682SMatthew G Knepley } 1681a89ea682SMatthew G Knepley 1682aa1993deSMatthew G Knepley /*@C 1683bb7acecfSBarry Smith DMRestoreWorkArray - Restores a work array obtained with `DMCreateWorkArray()` 1684aa1993deSMatthew G Knepley 1685aa1993deSMatthew G Knepley Not Collective 1686aa1993deSMatthew G Knepley 1687aa1993deSMatthew G Knepley Input Parameters: 1688bb7acecfSBarry Smith + dm - the `DM` object 1689a5b23f4aSJose E. Roman . count - The minimum size 169069291d52SBarry Smith - dtype - MPI data type, often MPIU_REAL, MPIU_SCALAR, MPIU_INT 1691aa1993deSMatthew G Knepley 1692aa1993deSMatthew G Knepley Output Parameter: 1693aa1993deSMatthew G Knepley . array - the work array 1694aa1993deSMatthew G Knepley 1695aa1993deSMatthew G Knepley Level: developer 1696aa1993deSMatthew G Knepley 169795452b02SPatrick Sanan Developer Notes: 1698bb7acecfSBarry Smith count and dtype are ignored, they are only needed for `DMGetWorkArray()` 1699147403d9SBarry Smith 1700bb7acecfSBarry Smith .seealso: `DMDestroy()`, `DMCreate()`, `DMGetWorkArray()` 1701aa1993deSMatthew G Knepley @*/ 1702d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestoreWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1703d71ae5a4SJacob Faibussowitsch { 1704aa1993deSMatthew G Knepley DMWorkLink *p, link; 1705aa1993deSMatthew G Knepley 1706aa1993deSMatthew G Knepley PetscFunctionBegin; 1707aa1993deSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1708aa1993deSMatthew G Knepley PetscValidPointer(mem, 4); 1709aa1993deSMatthew G Knepley for (p = &dm->workout; (link = *p); p = &link->next) { 1710aa1993deSMatthew G Knepley if (link->mem == *(void **)mem) { 1711aa1993deSMatthew G Knepley *p = link->next; 1712aa1993deSMatthew G Knepley link->next = dm->workin; 1713aa1993deSMatthew G Knepley dm->workin = link; 17140298fd71SBarry Smith *(void **)mem = NULL; 1715aa1993deSMatthew G Knepley PetscFunctionReturn(0); 1716aa1993deSMatthew G Knepley } 1717aa1993deSMatthew G Knepley } 1718aa1993deSMatthew G Knepley SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Array was not checked out"); 1719aa1993deSMatthew G Knepley } 1720e7c4fc90SDmitry Karpeev 17218cda7954SMatthew G. Knepley /*@C 1722bb7acecfSBarry Smith DMSetNullSpaceConstructor - Provide a callback function which constructs the nullspace for a given field, defined with `DMAddField()`, when function spaces 1723bb7acecfSBarry Smith are joined or split, such as in `DMCreateSubDM()` 17248cda7954SMatthew G. Knepley 1725bb7acecfSBarry Smith Logically collective on dm 17268cda7954SMatthew G. Knepley 17278cda7954SMatthew G. Knepley Input Parameters: 1728bb7acecfSBarry Smith + dm - The `DM` 17298cda7954SMatthew G. Knepley . field - The field number for the nullspace 17308cda7954SMatthew G. Knepley - nullsp - A callback to create the nullspace 17318cda7954SMatthew G. Knepley 1732147403d9SBarry Smith Calling sequence of nullsp: 1733147403d9SBarry Smith .vb 1734147403d9SBarry Smith PetscErrorCode nullsp(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace) 1735147403d9SBarry Smith .ve 1736bb7acecfSBarry Smith + dm - The present `DM` 1737bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1738147403d9SBarry Smith . field - The field number in dm 1739147403d9SBarry Smith - nullSpace - The nullspace for the given field 17408cda7954SMatthew G. Knepley 174149762cbcSSatish Balay Level: intermediate 174249762cbcSSatish Balay 1743bb7acecfSBarry Smith Fortran Notes: 1744bb7acecfSBarry Smith This function is not available from Fortran. 1745bb7acecfSBarry Smith 1746bb7acecfSBarry Smith .seealso: `DMAddField()`, `DMGetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1747147403d9SBarry Smith @*/ 1748d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM, PetscInt, PetscInt, MatNullSpace *)) 1749d71ae5a4SJacob Faibussowitsch { 1750435a35e8SMatthew G Knepley PetscFunctionBegin; 1751435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17527a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1753435a35e8SMatthew G Knepley dm->nullspaceConstructors[field] = nullsp; 1754435a35e8SMatthew G Knepley PetscFunctionReturn(0); 1755435a35e8SMatthew G Knepley } 1756435a35e8SMatthew G Knepley 17578cda7954SMatthew G. Knepley /*@C 1758bb7acecfSBarry Smith DMGetNullSpaceConstructor - Return the callback function which constructs the nullspace for a given field, defined with `DMAddField()` 17598cda7954SMatthew G. Knepley 17608cda7954SMatthew G. Knepley Not collective 17618cda7954SMatthew G. Knepley 17628cda7954SMatthew G. Knepley Input Parameters: 1763bb7acecfSBarry Smith + dm - The `DM` 17648cda7954SMatthew G. Knepley - field - The field number for the nullspace 17658cda7954SMatthew G. Knepley 17668cda7954SMatthew G. Knepley Output Parameter: 17678cda7954SMatthew G. Knepley . nullsp - A callback to create the nullspace 17688cda7954SMatthew G. Knepley 1769147403d9SBarry Smith Calling sequence of nullsp: 1770147403d9SBarry Smith .vb 1771147403d9SBarry Smith PetscErrorCode nullsp(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace) 1772147403d9SBarry Smith .ve 1773147403d9SBarry Smith + dm - The present DM 1774147403d9SBarry Smith . origField - The field number given above, in the original DM 1775147403d9SBarry Smith . field - The field number in dm 1776147403d9SBarry Smith - nullSpace - The nullspace for the given field 17778cda7954SMatthew G. Knepley 1778bb7acecfSBarry Smith Fortran Note: 1779bb7acecfSBarry Smith This function is not available from Fortran. 17808cda7954SMatthew G. Knepley 178149762cbcSSatish Balay Level: intermediate 178249762cbcSSatish Balay 1783bb7acecfSBarry Smith .seealso: `DMAddField()`, `DMGetField()`, `DMSetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1784147403d9SBarry Smith @*/ 1785d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM, PetscInt, PetscInt, MatNullSpace *)) 1786d71ae5a4SJacob Faibussowitsch { 17870a50eb56SMatthew G. Knepley PetscFunctionBegin; 17880a50eb56SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1789f9d4088aSMatthew G. Knepley PetscValidPointer(nullsp, 3); 17907a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 17910a50eb56SMatthew G. Knepley *nullsp = dm->nullspaceConstructors[field]; 17920a50eb56SMatthew G. Knepley PetscFunctionReturn(0); 17930a50eb56SMatthew G. Knepley } 17940a50eb56SMatthew G. Knepley 17958cda7954SMatthew G. Knepley /*@C 1796bb7acecfSBarry Smith DMSetNearNullSpaceConstructor - Provide a callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 17978cda7954SMatthew G. Knepley 1798bb7acecfSBarry Smith Logically collective on dm 17998cda7954SMatthew G. Knepley 18008cda7954SMatthew G. Knepley Input Parameters: 1801bb7acecfSBarry Smith + dm - The `DM` 18028cda7954SMatthew G. Knepley . field - The field number for the nullspace 18038cda7954SMatthew G. Knepley - nullsp - A callback to create the near-nullspace 18048cda7954SMatthew G. Knepley 1805147403d9SBarry Smith Calling sequence of nullsp: 1806147403d9SBarry Smith .vb 1807147403d9SBarry Smith PetscErrorCode nullsp(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace) 1808147403d9SBarry Smith .ve 1809bb7acecfSBarry Smith + dm - The present `DM` 1810bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1811147403d9SBarry Smith . field - The field number in dm 1812147403d9SBarry Smith - nullSpace - The nullspace for the given field 18138cda7954SMatthew G. Knepley 1814bb7acecfSBarry Smith Fortran Note: 1815bb7acecfSBarry Smith This function is not available from Fortran. 18168cda7954SMatthew G. Knepley 181749762cbcSSatish Balay Level: intermediate 181849762cbcSSatish Balay 1819bb7acecfSBarry Smith .seealso: `DMAddField()`, `DMGetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`, 1820bb7acecfSBarry Smith `MatNullSpace` 1821147403d9SBarry Smith @*/ 1822d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM, PetscInt, PetscInt, MatNullSpace *)) 1823d71ae5a4SJacob Faibussowitsch { 1824f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1825f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18267a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1827f9d4088aSMatthew G. Knepley dm->nearnullspaceConstructors[field] = nullsp; 1828f9d4088aSMatthew G. Knepley PetscFunctionReturn(0); 1829f9d4088aSMatthew G. Knepley } 1830f9d4088aSMatthew G. Knepley 18318cda7954SMatthew G. Knepley /*@C 1832bb7acecfSBarry Smith DMGetNearNullSpaceConstructor - Return the callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 18338cda7954SMatthew G. Knepley 18348cda7954SMatthew G. Knepley Not collective 18358cda7954SMatthew G. Knepley 18368cda7954SMatthew G. Knepley Input Parameters: 1837bb7acecfSBarry Smith + dm - The `DM` 18388cda7954SMatthew G. Knepley - field - The field number for the nullspace 18398cda7954SMatthew G. Knepley 18408cda7954SMatthew G. Knepley Output Parameter: 18418cda7954SMatthew G. Knepley . nullsp - A callback to create the near-nullspace 18428cda7954SMatthew G. Knepley 1843147403d9SBarry Smith Calling sequence of nullsp: 1844147403d9SBarry Smith .vb 1845147403d9SBarry Smith PetscErrorCode nullsp(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace) 1846147403d9SBarry Smith .ve 1847bb7acecfSBarry Smith + dm - The present `DM` 1848bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1849147403d9SBarry Smith . field - The field number in dm 1850147403d9SBarry Smith - nullSpace - The nullspace for the given field 18518cda7954SMatthew G. Knepley 1852bb7acecfSBarry Smith Fortran Note: 1853bb7acecfSBarry Smith This function is not available from Fortran. 18548cda7954SMatthew G. Knepley 185549762cbcSSatish Balay Level: intermediate 185649762cbcSSatish Balay 1857bb7acecfSBarry Smith .seealso: `DMAddField()`, `DMGetField()`, `DMSetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, 1858bb7acecfSBarry Smith `MatNullSpace`, `DMCreateSuperDM()` 1859147403d9SBarry Smith @*/ 1860d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM, PetscInt, PetscInt, MatNullSpace *)) 1861d71ae5a4SJacob Faibussowitsch { 1862f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1863f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1864f9d4088aSMatthew G. Knepley PetscValidPointer(nullsp, 3); 18657a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1866f9d4088aSMatthew G. Knepley *nullsp = dm->nearnullspaceConstructors[field]; 1867f9d4088aSMatthew G. Knepley PetscFunctionReturn(0); 1868f9d4088aSMatthew G. Knepley } 1869f9d4088aSMatthew G. Knepley 18704f3b5142SJed Brown /*@C 1871bb7acecfSBarry Smith DMCreateFieldIS - Creates a set of `IS` objects with the global indices of dofs for each field defined with `DMAddField()` 18724d343eeaSMatthew G Knepley 18734d343eeaSMatthew G Knepley Not collective 18744d343eeaSMatthew G Knepley 18754d343eeaSMatthew G Knepley Input Parameter: 1876bb7acecfSBarry Smith . dm - the `DM` object 18774d343eeaSMatthew G Knepley 18784d343eeaSMatthew G Knepley Output Parameters: 18790298fd71SBarry Smith + numFields - The number of fields (or NULL if not requested) 1880bb7acecfSBarry Smith . fieldNames - The number of each field (or NULL if not requested) 18810298fd71SBarry Smith - fields - The global indices for each field (or NULL if not requested) 18824d343eeaSMatthew G Knepley 18834d343eeaSMatthew G Knepley Level: intermediate 18844d343eeaSMatthew G Knepley 1885bb7acecfSBarry Smith Note: 188621c9b008SJed Brown The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with 1887bb7acecfSBarry Smith `PetscFree()`, every entry of fields should be destroyed with `ISDestroy()`, and both arrays should be freed with 1888bb7acecfSBarry Smith `PetscFree()`. 188921c9b008SJed Brown 1890bb7acecfSBarry Smith Fortran Note: 1891bb7acecfSBarry Smith Not available in Fortran. 1892bb7acecfSBarry Smith 1893bb7acecfSBarry Smith Developer Note: 1894bb7acecfSBarry Smith It is not clear why both this function and `DMCreateFieldDecomposition()` exist. Having two seems redundant and confusing. This function should 1895bb7acecfSBarry Smith likely be removed. 1896bb7acecfSBarry Smith 1897bb7acecfSBarry Smith .seealso: `DMAddField()`, `DMGetField()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1898bb7acecfSBarry Smith `DMCreateFieldDecomposition()` 18994d343eeaSMatthew G Knepley @*/ 1900d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldIS(DM dm, PetscInt *numFields, char ***fieldNames, IS **fields) 1901d71ae5a4SJacob Faibussowitsch { 190237d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 19034d343eeaSMatthew G Knepley 19044d343eeaSMatthew G Knepley PetscFunctionBegin; 19054d343eeaSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 190669ca1f37SDmitry Karpeev if (numFields) { 1907534a8f05SLisandro Dalcin PetscValidIntPointer(numFields, 2); 190869ca1f37SDmitry Karpeev *numFields = 0; 190969ca1f37SDmitry Karpeev } 191037d0c07bSMatthew G Knepley if (fieldNames) { 191137d0c07bSMatthew G Knepley PetscValidPointer(fieldNames, 3); 19120298fd71SBarry Smith *fieldNames = NULL; 191369ca1f37SDmitry Karpeev } 191469ca1f37SDmitry Karpeev if (fields) { 191569ca1f37SDmitry Karpeev PetscValidPointer(fields, 4); 19160298fd71SBarry Smith *fields = NULL; 191769ca1f37SDmitry Karpeev } 19189566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 191937d0c07bSMatthew G Knepley if (section) { 19203a544194SStefano Zampini PetscInt *fieldSizes, *fieldNc, **fieldIndices; 192137d0c07bSMatthew G Knepley PetscInt nF, f, pStart, pEnd, p; 192237d0c07bSMatthew G Knepley 19239566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 19249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &nF)); 19259566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nF, &fieldSizes, nF, &fieldNc, nF, &fieldIndices)); 19269566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd)); 192737d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 192837d0c07bSMatthew G Knepley fieldSizes[f] = 0; 19299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &fieldNc[f])); 193037d0c07bSMatthew G Knepley } 193137d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 193237d0c07bSMatthew G Knepley PetscInt gdof; 193337d0c07bSMatthew G Knepley 19349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 193537d0c07bSMatthew G Knepley if (gdof > 0) { 193637d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19373a544194SStefano Zampini PetscInt fdof, fcdof, fpdof; 193837d0c07bSMatthew G Knepley 19399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 19413a544194SStefano Zampini fpdof = fdof - fcdof; 19423a544194SStefano Zampini if (fpdof && fpdof != fieldNc[f]) { 19433a544194SStefano Zampini /* Layout does not admit a pointwise block size */ 19443a544194SStefano Zampini fieldNc[f] = 1; 19453a544194SStefano Zampini } 19463a544194SStefano Zampini fieldSizes[f] += fpdof; 194737d0c07bSMatthew G Knepley } 194837d0c07bSMatthew G Knepley } 194937d0c07bSMatthew G Knepley } 195037d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(fieldSizes[f], &fieldIndices[f])); 195237d0c07bSMatthew G Knepley fieldSizes[f] = 0; 195337d0c07bSMatthew G Knepley } 195437d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 195537d0c07bSMatthew G Knepley PetscInt gdof, goff; 195637d0c07bSMatthew G Knepley 19579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 195837d0c07bSMatthew G Knepley if (gdof > 0) { 19599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &goff)); 196037d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 196137d0c07bSMatthew G Knepley PetscInt fdof, fcdof, fc; 196237d0c07bSMatthew G Knepley 19639566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19649566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 1965ad540459SPierre Jolivet for (fc = 0; fc < fdof - fcdof; ++fc, ++fieldSizes[f]) fieldIndices[f][fieldSizes[f]] = goff++; 196637d0c07bSMatthew G Knepley } 196737d0c07bSMatthew G Knepley } 196837d0c07bSMatthew G Knepley } 19698865f1eaSKarl Rupp if (numFields) *numFields = nF; 197037d0c07bSMatthew G Knepley if (fieldNames) { 19719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fieldNames)); 197237d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 197337d0c07bSMatthew G Knepley const char *fieldName; 197437d0c07bSMatthew G Knepley 19759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 19769566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(fieldName, (char **)&(*fieldNames)[f])); 197737d0c07bSMatthew G Knepley } 197837d0c07bSMatthew G Knepley } 197937d0c07bSMatthew G Knepley if (fields) { 19809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fields)); 198137d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19823a544194SStefano Zampini PetscInt bs, in[2], out[2]; 19833a544194SStefano Zampini 19849566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), fieldSizes[f], fieldIndices[f], PETSC_OWN_POINTER, &(*fields)[f])); 19853a544194SStefano Zampini in[0] = -fieldNc[f]; 19863a544194SStefano Zampini in[1] = fieldNc[f]; 19871c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 19883a544194SStefano Zampini bs = (-out[0] == out[1]) ? out[1] : 1; 19899566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize((*fields)[f], bs)); 199037d0c07bSMatthew G Knepley } 199137d0c07bSMatthew G Knepley } 19929566063dSJacob Faibussowitsch PetscCall(PetscFree3(fieldSizes, fieldNc, fieldIndices)); 1993dbbe0bcdSBarry Smith } else PetscTryTypeMethod(dm, createfieldis, numFields, fieldNames, fields); 19944d343eeaSMatthew G Knepley PetscFunctionReturn(0); 19954d343eeaSMatthew G Knepley } 19964d343eeaSMatthew G Knepley 199716621825SDmitry Karpeev /*@C 1998bb7acecfSBarry Smith DMCreateFieldDecomposition - Returns a list of `IS` objects defining a decomposition of a problem into subproblems 1999bb7acecfSBarry Smith corresponding to different fields: each `IS` contains the global indices of the dofs of the 2000bb7acecfSBarry Smith corresponding field, defined by `DMAddField()`. The optional list of `DM`s define the `DM` for each subproblem. 2001bb7acecfSBarry Smith The same as `DMCreateFieldIS()` but also returns a `DM` for each field. 2002e7c4fc90SDmitry Karpeev 2003e7c4fc90SDmitry Karpeev Not collective 2004e7c4fc90SDmitry Karpeev 2005e7c4fc90SDmitry Karpeev Input Parameter: 2006bb7acecfSBarry Smith . dm - the `DM` object 2007e7c4fc90SDmitry Karpeev 2008e7c4fc90SDmitry Karpeev Output Parameters: 2009bb7acecfSBarry Smith + len - The number of fields (or NULL if not requested) 20100298fd71SBarry Smith . namelist - The name for each field (or NULL if not requested) 20110298fd71SBarry Smith . islist - The global indices for each field (or NULL if not requested) 2012bb7acecfSBarry Smith - dmlist - The `DM`s for each field subproblem (or NULL, if not requested; if NULL is returned, no `DM`s are defined) 2013e7c4fc90SDmitry Karpeev 2014e7c4fc90SDmitry Karpeev Level: intermediate 2015e7c4fc90SDmitry Karpeev 2016bb7acecfSBarry Smith Note: 2017e7c4fc90SDmitry Karpeev The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with 2018bb7acecfSBarry Smith `PetscFree()`, every entry of is should be destroyed with `ISDestroy()`, every entry of dm should be destroyed with `DMDestroy()`, 2019bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 2020e7c4fc90SDmitry Karpeev 2021bb7acecfSBarry Smith Fortran Note: 2022bb7acecfSBarry Smith Not available in Fortran. 2023bb7acecfSBarry Smith 2024bb7acecfSBarry Smith Developer Note: 2025bb7acecfSBarry Smith It is not clear why this function and `DMCreateFieldIS()` exist. Having two seems redundant and confusing. 2026bb7acecfSBarry Smith 2027bb7acecfSBarry Smith .seealso: `DMAddField()`, `DMCreateFieldIS()`, `DMCreateSubDM()`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 2028e7c4fc90SDmitry Karpeev @*/ 2029d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldDecomposition(DM dm, PetscInt *len, char ***namelist, IS **islist, DM **dmlist) 2030d71ae5a4SJacob Faibussowitsch { 2031e7c4fc90SDmitry Karpeev PetscFunctionBegin; 2032e7c4fc90SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 20338865f1eaSKarl Rupp if (len) { 2034534a8f05SLisandro Dalcin PetscValidIntPointer(len, 2); 20358865f1eaSKarl Rupp *len = 0; 20368865f1eaSKarl Rupp } 20378865f1eaSKarl Rupp if (namelist) { 20388865f1eaSKarl Rupp PetscValidPointer(namelist, 3); 2039ea78f98cSLisandro Dalcin *namelist = NULL; 20408865f1eaSKarl Rupp } 20418865f1eaSKarl Rupp if (islist) { 20428865f1eaSKarl Rupp PetscValidPointer(islist, 4); 2043ea78f98cSLisandro Dalcin *islist = NULL; 20448865f1eaSKarl Rupp } 20458865f1eaSKarl Rupp if (dmlist) { 20468865f1eaSKarl Rupp PetscValidPointer(dmlist, 5); 2047ea78f98cSLisandro Dalcin *dmlist = NULL; 20488865f1eaSKarl Rupp } 2049f3f0edfdSDmitry Karpeev /* 2050f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2051f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2052f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2053f3f0edfdSDmitry Karpeev */ 20547a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 205516621825SDmitry Karpeev if (!dm->ops->createfielddecomposition) { 2056435a35e8SMatthew G Knepley PetscSection section; 2057435a35e8SMatthew G Knepley PetscInt numFields, f; 2058435a35e8SMatthew G Knepley 20599566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 20609566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(section, &numFields)); 2061435a35e8SMatthew G Knepley if (section && numFields && dm->ops->createsubdm) { 2062f25d98f1SMatthew G. Knepley if (len) *len = numFields; 20639566063dSJacob Faibussowitsch if (namelist) PetscCall(PetscMalloc1(numFields, namelist)); 20649566063dSJacob Faibussowitsch if (islist) PetscCall(PetscMalloc1(numFields, islist)); 20659566063dSJacob Faibussowitsch if (dmlist) PetscCall(PetscMalloc1(numFields, dmlist)); 2066435a35e8SMatthew G Knepley for (f = 0; f < numFields; ++f) { 2067435a35e8SMatthew G Knepley const char *fieldName; 2068435a35e8SMatthew G Knepley 20699566063dSJacob Faibussowitsch PetscCall(DMCreateSubDM(dm, 1, &f, islist ? &(*islist)[f] : NULL, dmlist ? &(*dmlist)[f] : NULL)); 207003dc3394SMatthew G. Knepley if (namelist) { 20719566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 20729566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(fieldName, (char **)&(*namelist)[f])); 2073435a35e8SMatthew G Knepley } 207403dc3394SMatthew G. Knepley } 2075435a35e8SMatthew G Knepley } else { 20769566063dSJacob Faibussowitsch PetscCall(DMCreateFieldIS(dm, len, namelist, islist)); 2077e7c4fc90SDmitry Karpeev /* By default there are no DMs associated with subproblems. */ 20780298fd71SBarry Smith if (dmlist) *dmlist = NULL; 2079e7c4fc90SDmitry Karpeev } 2080dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, createfielddecomposition, len, namelist, islist, dmlist); 208116621825SDmitry Karpeev PetscFunctionReturn(0); 208216621825SDmitry Karpeev } 208316621825SDmitry Karpeev 2084412a4547SAlexis Marboeuf /*@C 2085412a4547SAlexis Marboeuf DMCreateSubDM - Returns an IS and DM encapsulating a subproblem defined by the fields passed in. 2086412a4547SAlexis Marboeuf The fields are defined by DMCreateFieldIS(). 2087435a35e8SMatthew G Knepley 2088435a35e8SMatthew G Knepley Not collective 2089435a35e8SMatthew G Knepley 2090435a35e8SMatthew G Knepley Input Parameters: 2091bb7acecfSBarry Smith + dm - The `DM `object 2092bb7acecfSBarry Smith . numFields - The number of fields to select 20932adcc780SMatthew G. Knepley - fields - The field numbers of the selected fields 2094435a35e8SMatthew G Knepley 2095435a35e8SMatthew G Knepley Output Parameters: 2096bb7acecfSBarry Smith + is - The global indices for all the degrees of freedom in the new sub `DM` 2097bb7acecfSBarry Smith - subdm - The `DM` for the subproblem 2098435a35e8SMatthew G Knepley 2099bb7acecfSBarry Smith Note: 2100bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 21015d3b26e6SMatthew G. Knepley 2102435a35e8SMatthew G Knepley Level: intermediate 2103435a35e8SMatthew G Knepley 2104bb7acecfSBarry Smith .seealso: `DMCreateFieldIS()`, `DMCreateFieldDecomposition()`, `DMAddField()`, `DMCreateSuperDM()`, `DM`, `IS`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 2105435a35e8SMatthew G Knepley @*/ 2106d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSubDM(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm) 2107d71ae5a4SJacob Faibussowitsch { 2108435a35e8SMatthew G Knepley PetscFunctionBegin; 2109435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2110dadcf809SJacob Faibussowitsch PetscValidIntPointer(fields, 3); 21118865f1eaSKarl Rupp if (is) PetscValidPointer(is, 4); 21128865f1eaSKarl Rupp if (subdm) PetscValidPointer(subdm, 5); 2113dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createsubdm, numFields, fields, is, subdm); 2114435a35e8SMatthew G Knepley PetscFunctionReturn(0); 2115435a35e8SMatthew G Knepley } 2116435a35e8SMatthew G Knepley 21172adcc780SMatthew G. Knepley /*@C 2118bb7acecfSBarry Smith DMCreateSuperDM - Returns an arrays of `IS` and `DM` encapsulating a superproblem defined by multiple `DM`s passed in. 21192adcc780SMatthew G. Knepley 21202adcc780SMatthew G. Knepley Not collective 21212adcc780SMatthew G. Knepley 2122d8d19677SJose E. Roman Input Parameters: 2123bb7acecfSBarry Smith + dms - The `DM` objects 2124bb7acecfSBarry Smith - n - The number of `DM`s 21252adcc780SMatthew G. Knepley 21262adcc780SMatthew G. Knepley Output Parameters: 2127bb7acecfSBarry Smith + is - The global indices for each of subproblem within the super `DM`, or NULL 2128bb7acecfSBarry Smith - superdm - The `DM` for the superproblem 21292adcc780SMatthew G. Knepley 2130bb7acecfSBarry Smith Note: 2131bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 21325d3b26e6SMatthew G. Knepley 21332adcc780SMatthew G. Knepley Level: intermediate 21342adcc780SMatthew G. Knepley 2135bb7acecfSBarry Smith .seealso: `DM`, `DMCreateSubDM()`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 21362adcc780SMatthew G. Knepley @*/ 2137d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSuperDM(DM dms[], PetscInt n, IS **is, DM *superdm) 2138d71ae5a4SJacob Faibussowitsch { 21392adcc780SMatthew G. Knepley PetscInt i; 21402adcc780SMatthew G. Knepley 21412adcc780SMatthew G. Knepley PetscFunctionBegin; 21422adcc780SMatthew G. Knepley PetscValidPointer(dms, 1); 2143ad540459SPierre Jolivet for (i = 0; i < n; ++i) PetscValidHeaderSpecific(dms[i], DM_CLASSID, 1); 21442adcc780SMatthew G. Knepley if (is) PetscValidPointer(is, 3); 2145a42bd24dSMatthew G. Knepley PetscValidPointer(superdm, 4); 2146bb7acecfSBarry Smith PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of DMs must be nonnegative: %" PetscInt_FMT, n); 2147bb7acecfSBarry Smith if (n) { 2148b9d85ea2SLisandro Dalcin DM dm = dms[0]; 2149dbbe0bcdSBarry Smith PetscCall((*dm->ops->createsuperdm)(dms, n, is, superdm)); 21502adcc780SMatthew G. Knepley } 21512adcc780SMatthew G. Knepley PetscFunctionReturn(0); 21522adcc780SMatthew G. Knepley } 21532adcc780SMatthew G. Knepley 215416621825SDmitry Karpeev /*@C 2155bb7acecfSBarry Smith DMCreateDomainDecomposition - Returns lists of `IS` objects defining a decomposition of a problem into subproblems 2156bb7acecfSBarry Smith corresponding to restrictions to pairs of nested subdomains: each `IS` contains the global 2157bb7acecfSBarry Smith indices of the dofs of the corresponding subdomains with in the dofs of the original `DM`. 2158bb7acecfSBarry Smith The inner subdomains conceptually define a nonoverlapping covering, while outer subdomains can overlap. 2159bb7acecfSBarry Smith The optional list of `DM`s define a `DM` for each subproblem. 216016621825SDmitry Karpeev 216116621825SDmitry Karpeev Not collective 216216621825SDmitry Karpeev 216316621825SDmitry Karpeev Input Parameter: 2164bb7acecfSBarry Smith . dm - the `DM` object 216516621825SDmitry Karpeev 216616621825SDmitry Karpeev Output Parameters: 2167bb7acecfSBarry Smith + n - The number of subproblems in the domain decomposition (or NULL if not requested) 21680298fd71SBarry Smith . namelist - The name for each subdomain (or NULL if not requested) 21690298fd71SBarry Smith . innerislist - The global indices for each inner subdomain (or NULL, if not requested) 21700298fd71SBarry Smith . outerislist - The global indices for each outer subdomain (or NULL, if not requested) 2171bb7acecfSBarry Smith - dmlist - The `DM`s for each subdomain subproblem (or NULL, if not requested; if NULL is returned, no `DM`s are defined) 217216621825SDmitry Karpeev 217316621825SDmitry Karpeev Level: intermediate 217416621825SDmitry Karpeev 2175bb7acecfSBarry Smith Note: 217616621825SDmitry Karpeev The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with 2177bb7acecfSBarry Smith `PetscFree()`, every entry of is should be destroyed with `ISDestroy()`, every entry of dm should be destroyed with `DMDestroy()`, 2178bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 217916621825SDmitry Karpeev 2180bb7acecfSBarry Smith Questions: 2181bb7acecfSBarry Smith The dmlist is for the inner subdomains or the outer subdomains or all subdomains? 2182bb7acecfSBarry Smith 2183bb7acecfSBarry Smith .seealso: `DMCreateFieldDecomposition()`, `DMDestroy()`, `DMCreateDomainDecompositionScatters()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldDecomposition()` 218416621825SDmitry Karpeev @*/ 2185d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecomposition(DM dm, PetscInt *n, char ***namelist, IS **innerislist, IS **outerislist, DM **dmlist) 2186d71ae5a4SJacob Faibussowitsch { 2187be081cd6SPeter Brune DMSubDomainHookLink link; 2188be081cd6SPeter Brune PetscInt i, l; 218916621825SDmitry Karpeev 219016621825SDmitry Karpeev PetscFunctionBegin; 219116621825SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 21929371c9d4SSatish Balay if (n) { 21939371c9d4SSatish Balay PetscValidIntPointer(n, 2); 21949371c9d4SSatish Balay *n = 0; 21959371c9d4SSatish Balay } 21969371c9d4SSatish Balay if (namelist) { 21979371c9d4SSatish Balay PetscValidPointer(namelist, 3); 21989371c9d4SSatish Balay *namelist = NULL; 21999371c9d4SSatish Balay } 22009371c9d4SSatish Balay if (innerislist) { 22019371c9d4SSatish Balay PetscValidPointer(innerislist, 4); 22029371c9d4SSatish Balay *innerislist = NULL; 22039371c9d4SSatish Balay } 22049371c9d4SSatish Balay if (outerislist) { 22059371c9d4SSatish Balay PetscValidPointer(outerislist, 5); 22069371c9d4SSatish Balay *outerislist = NULL; 22079371c9d4SSatish Balay } 22089371c9d4SSatish Balay if (dmlist) { 22099371c9d4SSatish Balay PetscValidPointer(dmlist, 6); 22109371c9d4SSatish Balay *dmlist = NULL; 22119371c9d4SSatish Balay } 2212f3f0edfdSDmitry Karpeev /* 2213f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2214f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2215f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2216f3f0edfdSDmitry Karpeev */ 22177a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 221816621825SDmitry Karpeev if (dm->ops->createdomaindecomposition) { 2219dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createdomaindecomposition, &l, namelist, innerislist, outerislist, dmlist); 222014a18fd3SPeter Brune /* copy subdomain hooks and context over to the subdomain DMs */ 2221f891f5b9SPatrick Sanan if (dmlist && *dmlist) { 2222be081cd6SPeter Brune for (i = 0; i < l; i++) { 2223be081cd6SPeter Brune for (link = dm->subdomainhook; link; link = link->next) { 22249566063dSJacob Faibussowitsch if (link->ddhook) PetscCall((*link->ddhook)(dm, (*dmlist)[i], link->ctx)); 2225be081cd6SPeter Brune } 2226648262bbSPatrick Sanan if (dm->ctx) (*dmlist)[i]->ctx = dm->ctx; 2227e7c4fc90SDmitry Karpeev } 222814a18fd3SPeter Brune } 2229bb7acecfSBarry Smith if (n) *n = l; 223014a18fd3SPeter Brune } 2231e30e807fSPeter Brune PetscFunctionReturn(0); 2232e30e807fSPeter Brune } 2233e30e807fSPeter Brune 2234e30e807fSPeter Brune /*@C 2235e30e807fSPeter Brune DMCreateDomainDecompositionScatters - Returns scatters to the subdomain vectors from the global vector 2236e30e807fSPeter Brune 2237e30e807fSPeter Brune Not collective 2238e30e807fSPeter Brune 2239e30e807fSPeter Brune Input Parameters: 2240bb7acecfSBarry Smith + dm - the `DM` object 2241e30e807fSPeter Brune . n - the number of subdomain scatters 2242e30e807fSPeter Brune - subdms - the local subdomains 2243e30e807fSPeter Brune 2244e30e807fSPeter Brune Output Parameters: 22456b867d5aSJose E. Roman + iscat - scatter from global vector to nonoverlapping global vector entries on subdomain 2246e30e807fSPeter Brune . oscat - scatter from global vector to overlapping global vector entries on subdomain 2247e30e807fSPeter Brune - gscat - scatter from global vector to local vector on subdomain (fills in ghosts) 2248e30e807fSPeter Brune 2249bb7acecfSBarry Smith Note: 2250bb7acecfSBarry Smith This is an alternative to the iis and ois arguments in `DMCreateDomainDecomposition()` that allow for the solution 2251e30e807fSPeter Brune of general nonlinear problems with overlapping subdomain methods. While merely having index sets that enable subsets 2252e30e807fSPeter Brune of the residual equations to be created is fine for linear problems, nonlinear problems require local assembly of 2253e30e807fSPeter Brune solution and residual data. 2254e30e807fSPeter Brune 2255bb7acecfSBarry Smith Questions: 2256bb7acecfSBarry Smith Can the subdms input be anything or are they exactly the `DM` obtained from `DMCreateDomainDecomposition()`? 2257bb7acecfSBarry Smith 2258e30e807fSPeter Brune Level: developer 2259e30e807fSPeter Brune 2260bb7acecfSBarry Smith .seealso: `DM`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 2261e30e807fSPeter Brune @*/ 2262d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecompositionScatters(DM dm, PetscInt n, DM *subdms, VecScatter **iscat, VecScatter **oscat, VecScatter **gscat) 2263d71ae5a4SJacob Faibussowitsch { 2264e30e807fSPeter Brune PetscFunctionBegin; 2265e30e807fSPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2266e30e807fSPeter Brune PetscValidPointer(subdms, 3); 2267dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createddscatters, n, subdms, iscat, oscat, gscat); 2268e7c4fc90SDmitry Karpeev PetscFunctionReturn(0); 2269e7c4fc90SDmitry Karpeev } 2270e7c4fc90SDmitry Karpeev 227147c6ae99SBarry Smith /*@ 2272bb7acecfSBarry Smith DMRefine - Refines a `DM` object using a standard nonadaptive refinement of the underlying mesh 227347c6ae99SBarry Smith 2274d083f849SBarry Smith Collective on dm 227547c6ae99SBarry Smith 2276d8d19677SJose E. Roman Input Parameters: 2277bb7acecfSBarry Smith + dm - the `DM` object 2278bb7acecfSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`) 227947c6ae99SBarry Smith 228047c6ae99SBarry Smith Output Parameter: 2281bb7acecfSBarry Smith . dmf - the refined `D`M, or NULL 2282ae0a1c52SMatthew G Knepley 2283f27dd7c6SMatthew G. Knepley Options Database Keys: 2284412e9a14SMatthew G. Knepley . -dm_plex_cell_refiner <strategy> - chooses the refinement strategy, e.g. regular, tohex 2285412e9a14SMatthew G. Knepley 2286bb7acecfSBarry Smith Note: 2287bb7acecfSBarry Smith If no refinement was done, the return value is NULL 228847c6ae99SBarry Smith 228947c6ae99SBarry Smith Level: developer 229047c6ae99SBarry Smith 2291bb7acecfSBarry Smith .seealso: `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 229247c6ae99SBarry Smith @*/ 2293d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefine(DM dm, MPI_Comm comm, DM *dmf) 2294d71ae5a4SJacob Faibussowitsch { 2295c833c3b5SJed Brown DMRefineHookLink link; 229647c6ae99SBarry Smith 229747c6ae99SBarry Smith PetscFunctionBegin; 2298732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 22999566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Refine, dm, 0, 0, 0)); 2300dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, refine, comm, dmf); 23014057135bSMatthew G Knepley if (*dmf) { 230243842a1eSJed Brown (*dmf)->ops->creatematrix = dm->ops->creatematrix; 23038865f1eaSKarl Rupp 23049566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmf)); 23058865f1eaSKarl Rupp 2306644e2e5bSBarry Smith (*dmf)->ctx = dm->ctx; 23070598a293SJed Brown (*dmf)->leveldown = dm->leveldown; 2308656b349aSBarry Smith (*dmf)->levelup = dm->levelup + 1; 23098865f1eaSKarl Rupp 23109566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmf, dm->mattype)); 2311c833c3b5SJed Brown for (link = dm->refinehook; link; link = link->next) { 23121baa6e33SBarry Smith if (link->refinehook) PetscCall((*link->refinehook)(dm, *dmf, link->ctx)); 2313c833c3b5SJed Brown } 2314c833c3b5SJed Brown } 23159566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Refine, dm, 0, 0, 0)); 2316c833c3b5SJed Brown PetscFunctionReturn(0); 2317c833c3b5SJed Brown } 2318c833c3b5SJed Brown 2319bb9467b5SJed Brown /*@C 2320c833c3b5SJed Brown DMRefineHookAdd - adds a callback to be run when interpolating a nonlinear problem to a finer grid 2321c833c3b5SJed Brown 2322bb7acecfSBarry Smith Logically Collective on coarse 2323c833c3b5SJed Brown 23244165533cSJose E. Roman Input Parameters: 2325bb7acecfSBarry Smith + coarse - `DM` on which to run a hook when interpolating to a finer level 2326bb7acecfSBarry Smith . refinehook - function to run when setting up the finer level 2327bb7acecfSBarry Smith . interphook - function to run to update data on finer levels (once per `SNESSolve`()) 23280298fd71SBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be NULL) 2329c833c3b5SJed Brown 2330c833c3b5SJed Brown Calling sequence of refinehook: 2331c833c3b5SJed Brown $ refinehook(DM coarse,DM fine,void *ctx); 2332c833c3b5SJed Brown 2333bb7acecfSBarry Smith + coarse - coarse level `DM` 2334bb7acecfSBarry Smith . fine - fine level `DM` to interpolate problem to 2335c833c3b5SJed Brown - ctx - optional user-defined function context 2336c833c3b5SJed Brown 2337c833c3b5SJed Brown Calling sequence for interphook: 2338c833c3b5SJed Brown $ interphook(DM coarse,Mat interp,DM fine,void *ctx) 2339c833c3b5SJed Brown 2340bb7acecfSBarry Smith + coarse - coarse level `DM` 2341c833c3b5SJed Brown . interp - matrix interpolating a coarse-level solution to the finer grid 2342bb7acecfSBarry Smith . fine - fine level `DM` to update 2343c833c3b5SJed Brown - ctx - optional user-defined function context 2344c833c3b5SJed Brown 2345c833c3b5SJed Brown Level: advanced 2346c833c3b5SJed Brown 2347c833c3b5SJed Brown Notes: 2348bb7acecfSBarry Smith This function is only needed if auxiliary data that is attached to the `DM`s via, for example, `PetscObjectCompose()`, needs to be 2349bb7acecfSBarry Smith passed to fine grids while grid sequencing. 2350bb7acecfSBarry Smith 2351bb7acecfSBarry Smith The actual interpolation is done when `DMInterpolate()` is called. 2352c833c3b5SJed Brown 2353c833c3b5SJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 2354c833c3b5SJed Brown 2355bb7acecfSBarry Smith Fortran Note: 2356bb7acecfSBarry Smith This function is not available from Fortran. 2357bb9467b5SJed Brown 2358bb7acecfSBarry Smith .seealso: `DM`, `DMCoarsenHookAdd()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2359c833c3b5SJed Brown @*/ 2360d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookAdd(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx) 2361d71ae5a4SJacob Faibussowitsch { 2362c833c3b5SJed Brown DMRefineHookLink link, *p; 2363c833c3b5SJed Brown 2364c833c3b5SJed Brown PetscFunctionBegin; 2365c833c3b5SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 23663d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 23673d8e3701SJed Brown if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) PetscFunctionReturn(0); 23683d8e3701SJed Brown } 23699566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2370c833c3b5SJed Brown link->refinehook = refinehook; 2371c833c3b5SJed Brown link->interphook = interphook; 2372c833c3b5SJed Brown link->ctx = ctx; 23730298fd71SBarry Smith link->next = NULL; 2374c833c3b5SJed Brown *p = link; 2375c833c3b5SJed Brown PetscFunctionReturn(0); 2376c833c3b5SJed Brown } 2377c833c3b5SJed Brown 23783d8e3701SJed Brown /*@C 2379bb7acecfSBarry Smith DMRefineHookRemove - remove a callback from the list of hooks, that have been set with `DMRefineHookAdd()`, to be run when interpolating 2380bb7acecfSBarry Smith a nonlinear problem to a finer grid 23813d8e3701SJed Brown 2382bb7acecfSBarry Smith Logically Collective on coarse 23833d8e3701SJed Brown 23844165533cSJose E. Roman Input Parameters: 2385bb7acecfSBarry Smith + coarse - the `DM` on which to run a hook when restricting to a coarser level 2386bb7acecfSBarry Smith . refinehook - function to run when setting up a finer level 2387bb7acecfSBarry Smith . interphook - function to run to update data on finer levels 23883d8e3701SJed Brown - ctx - [optional] user-defined context for provide data for the hooks (may be NULL) 23893d8e3701SJed Brown 23903d8e3701SJed Brown Level: advanced 23913d8e3701SJed Brown 2392bb7acecfSBarry Smith Note: 23933d8e3701SJed Brown This function does nothing if the hook is not in the list. 23943d8e3701SJed Brown 2395bb7acecfSBarry Smith Fortran Note: 2396bb7acecfSBarry Smith This function is not available from Fortran. 23973d8e3701SJed Brown 2398bb7acecfSBarry Smith .seealso: `DMRefineHookAdd()`, `DMCoarsenHookRemove()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 23993d8e3701SJed Brown @*/ 2400d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookRemove(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx) 2401d71ae5a4SJacob Faibussowitsch { 24023d8e3701SJed Brown DMRefineHookLink link, *p; 24033d8e3701SJed Brown 24043d8e3701SJed Brown PetscFunctionBegin; 24053d8e3701SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 24063d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 24073d8e3701SJed Brown if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) { 24083d8e3701SJed Brown link = *p; 24093d8e3701SJed Brown *p = link->next; 24109566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 24113d8e3701SJed Brown break; 24123d8e3701SJed Brown } 24133d8e3701SJed Brown } 24143d8e3701SJed Brown PetscFunctionReturn(0); 24153d8e3701SJed Brown } 24163d8e3701SJed Brown 2417c833c3b5SJed Brown /*@ 2418bb7acecfSBarry Smith DMInterpolate - interpolates user-defined problem data attached to a `DM` to a finer `DM` by running hooks registered by `DMRefineHookAdd()` 2419c833c3b5SJed Brown 2420c833c3b5SJed Brown Collective if any hooks are 2421c833c3b5SJed Brown 24224165533cSJose E. Roman Input Parameters: 2423bb7acecfSBarry Smith + coarse - coarser `DM` to use as a base 2424bb7acecfSBarry Smith . interp - interpolation matrix, apply using `MatInterpolate()` 2425bb7acecfSBarry Smith - fine - finer `DM` to update 2426c833c3b5SJed Brown 2427c833c3b5SJed Brown Level: developer 2428c833c3b5SJed Brown 2429bb7acecfSBarry Smith Developer Note: 2430bb7acecfSBarry Smith This routine is called `DMInterpolate()` while the hook is called `DMRefineHookAdd()`. It would be better to have an 2431bb7acecfSBarry Smith an API with consistent terminology. 2432bb7acecfSBarry Smith 2433bb7acecfSBarry Smith .seealso: `DM`, `DMRefineHookAdd()`, `MatInterpolate()` 2434c833c3b5SJed Brown @*/ 2435d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolate(DM coarse, Mat interp, DM fine) 2436d71ae5a4SJacob Faibussowitsch { 2437c833c3b5SJed Brown DMRefineHookLink link; 2438c833c3b5SJed Brown 2439c833c3b5SJed Brown PetscFunctionBegin; 2440c833c3b5SJed Brown for (link = fine->refinehook; link; link = link->next) { 24411baa6e33SBarry Smith if (link->interphook) PetscCall((*link->interphook)(coarse, interp, fine, link->ctx)); 24424057135bSMatthew G Knepley } 244347c6ae99SBarry Smith PetscFunctionReturn(0); 244447c6ae99SBarry Smith } 244547c6ae99SBarry Smith 2446eb3f98d2SBarry Smith /*@ 24471f3379b2SToby Isaac DMInterpolateSolution - Interpolates a solution from a coarse mesh to a fine mesh. 24481f3379b2SToby Isaac 2449bb7acecfSBarry Smith Collective on dm 24501f3379b2SToby Isaac 24514165533cSJose E. Roman Input Parameters: 2452bb7acecfSBarry Smith + coarse - coarse `DM` 2453bb7acecfSBarry Smith . fine - fine `DM` 2454bb7acecfSBarry Smith . interp - (optional) the matrix computed by `DMCreateInterpolation()`. Implementations may not need this, but if it 2455bb7acecfSBarry Smith is available it can avoid some recomputation. If it is provided, `MatInterpolate()` will be used if 2456bb7acecfSBarry Smith the coarse `DM` does not have a specialized implementation. 24571f3379b2SToby Isaac - coarseSol - solution on the coarse mesh 24581f3379b2SToby Isaac 24594165533cSJose E. Roman Output Parameter: 24601f3379b2SToby Isaac . fineSol - the interpolation of coarseSol to the fine mesh 24611f3379b2SToby Isaac 24621f3379b2SToby Isaac Level: developer 24631f3379b2SToby Isaac 2464bb7acecfSBarry Smith Note: 2465bb7acecfSBarry Smith This function exists because the interpolation of a solution vector between meshes is not always a linear 24661f3379b2SToby Isaac map. For example, if a boundary value problem has an inhomogeneous Dirichlet boundary condition that is compressed 24671f3379b2SToby Isaac out of the solution vector. Or if interpolation is inherently a nonlinear operation, such as a method using 24681f3379b2SToby Isaac slope-limiting reconstruction. 24691f3379b2SToby Isaac 2470bb7acecfSBarry Smith Developer Note: 2471bb7acecfSBarry Smith This doesn't just interpolate "solutions" so its API name is questionable. 2472bb7acecfSBarry Smith 2473bb7acecfSBarry Smith .seealso: `DMInterpolate()`, `DMCreateInterpolation()` 24741f3379b2SToby Isaac @*/ 2475d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolateSolution(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol) 2476d71ae5a4SJacob Faibussowitsch { 24771f3379b2SToby Isaac PetscErrorCode (*interpsol)(DM, DM, Mat, Vec, Vec) = NULL; 24781f3379b2SToby Isaac 24791f3379b2SToby Isaac PetscFunctionBegin; 24801f3379b2SToby Isaac PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 24811f3379b2SToby Isaac if (interp) PetscValidHeaderSpecific(interp, MAT_CLASSID, 3); 24821f3379b2SToby Isaac PetscValidHeaderSpecific(coarseSol, VEC_CLASSID, 4); 24831f3379b2SToby Isaac PetscValidHeaderSpecific(fineSol, VEC_CLASSID, 5); 24841f3379b2SToby Isaac 24859566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)coarse, "DMInterpolateSolution_C", &interpsol)); 24861f3379b2SToby Isaac if (interpsol) { 24879566063dSJacob Faibussowitsch PetscCall((*interpsol)(coarse, fine, interp, coarseSol, fineSol)); 24881f3379b2SToby Isaac } else if (interp) { 24899566063dSJacob Faibussowitsch PetscCall(MatInterpolate(interp, coarseSol, fineSol)); 249098921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)coarse), PETSC_ERR_SUP, "DM %s does not implement DMInterpolateSolution()", ((PetscObject)coarse)->type_name); 24911f3379b2SToby Isaac PetscFunctionReturn(0); 24921f3379b2SToby Isaac } 24931f3379b2SToby Isaac 24941f3379b2SToby Isaac /*@ 2495bb7acecfSBarry Smith DMGetRefineLevel - Gets the number of refinements that have generated this `DM` from some initial `DM`. 2496eb3f98d2SBarry Smith 2497eb3f98d2SBarry Smith Not Collective 2498eb3f98d2SBarry Smith 2499eb3f98d2SBarry Smith Input Parameter: 2500bb7acecfSBarry Smith . dm - the `DM` object 2501eb3f98d2SBarry Smith 2502eb3f98d2SBarry Smith Output Parameter: 2503eb3f98d2SBarry Smith . level - number of refinements 2504eb3f98d2SBarry Smith 2505eb3f98d2SBarry Smith Level: developer 2506eb3f98d2SBarry Smith 2507bb7acecfSBarry Smith Note: 2508bb7acecfSBarry Smith This can be used, by example, to set the number of coarser levels associated with this `DM` for a multigrid solver. 2509bb7acecfSBarry Smith 2510bb7acecfSBarry Smith .seealso: `DMRefine()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2511eb3f98d2SBarry Smith @*/ 2512d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRefineLevel(DM dm, PetscInt *level) 2513d71ae5a4SJacob Faibussowitsch { 2514eb3f98d2SBarry Smith PetscFunctionBegin; 2515eb3f98d2SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2516eb3f98d2SBarry Smith *level = dm->levelup; 2517eb3f98d2SBarry Smith PetscFunctionReturn(0); 2518eb3f98d2SBarry Smith } 2519eb3f98d2SBarry Smith 2520fef3a512SBarry Smith /*@ 2521bb7acecfSBarry Smith DMSetRefineLevel - Sets the number of refinements that have generated this `DM`. 2522fef3a512SBarry Smith 2523fef3a512SBarry Smith Not Collective 2524fef3a512SBarry Smith 2525d8d19677SJose E. Roman Input Parameters: 2526bb7acecfSBarry Smith + dm - the `DM` object 2527fef3a512SBarry Smith - level - number of refinements 2528fef3a512SBarry Smith 2529fef3a512SBarry Smith Level: advanced 2530fef3a512SBarry Smith 253195452b02SPatrick Sanan Notes: 2532bb7acecfSBarry Smith This value is used by `PCMG` to determine how many multigrid levels to use 2533fef3a512SBarry Smith 2534bb7acecfSBarry Smith The values are usually set automatically by the process that is causing the refinements of an initial `DM` by calling this routine. 2535bb7acecfSBarry Smith 2536bb7acecfSBarry Smith .seealso: `DMGetRefineLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2537fef3a512SBarry Smith @*/ 2538d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRefineLevel(DM dm, PetscInt level) 2539d71ae5a4SJacob Faibussowitsch { 2540fef3a512SBarry Smith PetscFunctionBegin; 2541fef3a512SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2542fef3a512SBarry Smith dm->levelup = level; 2543fef3a512SBarry Smith PetscFunctionReturn(0); 2544fef3a512SBarry Smith } 2545fef3a512SBarry Smith 2546d410b0cfSMatthew G. Knepley /*@ 2547bb7acecfSBarry Smith DMExtrude - Extrude a `DM` object from a surface 2548d410b0cfSMatthew G. Knepley 2549d410b0cfSMatthew G. Knepley Collective on dm 2550d410b0cfSMatthew G. Knepley 2551f1a722f8SMatthew G. Knepley Input Parameters: 2552bb7acecfSBarry Smith + dm - the `DM` object 2553d410b0cfSMatthew G. Knepley - layers - the number of extruded cell layers 2554d410b0cfSMatthew G. Knepley 2555d410b0cfSMatthew G. Knepley Output Parameter: 2556bb7acecfSBarry Smith . dme - the extruded `DM`, or NULL 2557d410b0cfSMatthew G. Knepley 2558bb7acecfSBarry Smith Note: 2559bb7acecfSBarry Smith If no extrusion was done, the return value is NULL 2560d410b0cfSMatthew G. Knepley 2561d410b0cfSMatthew G. Knepley Level: developer 2562d410b0cfSMatthew G. Knepley 2563bb7acecfSBarry Smith .seealso: `DMRefine()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()` 2564d410b0cfSMatthew G. Knepley @*/ 2565d71ae5a4SJacob Faibussowitsch PetscErrorCode DMExtrude(DM dm, PetscInt layers, DM *dme) 2566d71ae5a4SJacob Faibussowitsch { 2567d410b0cfSMatthew G. Knepley PetscFunctionBegin; 2568d410b0cfSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2569dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, extrude, layers, dme); 2570d410b0cfSMatthew G. Knepley if (*dme) { 2571d410b0cfSMatthew G. Knepley (*dme)->ops->creatematrix = dm->ops->creatematrix; 25729566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dme)); 2573d410b0cfSMatthew G. Knepley (*dme)->ctx = dm->ctx; 25749566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dme, dm->mattype)); 2575d410b0cfSMatthew G. Knepley } 2576d410b0cfSMatthew G. Knepley PetscFunctionReturn(0); 2577d410b0cfSMatthew G. Knepley } 2578d410b0cfSMatthew G. Knepley 2579d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformDM_Internal(DM dm, DM *tdm) 2580d71ae5a4SJacob Faibussowitsch { 2581ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2582ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2583ca3d3a14SMatthew G. Knepley PetscValidPointer(tdm, 2); 2584ca3d3a14SMatthew G. Knepley *tdm = dm->transformDM; 2585ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 2586ca3d3a14SMatthew G. Knepley } 2587ca3d3a14SMatthew G. Knepley 2588d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformVec_Internal(DM dm, Vec *tv) 2589d71ae5a4SJacob Faibussowitsch { 2590ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2591ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2592ca3d3a14SMatthew G. Knepley PetscValidPointer(tv, 2); 2593ca3d3a14SMatthew G. Knepley *tv = dm->transform; 2594ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 2595ca3d3a14SMatthew G. Knepley } 2596ca3d3a14SMatthew G. Knepley 2597ca3d3a14SMatthew G. Knepley /*@ 2598bb7acecfSBarry Smith DMHasBasisTransform - Whether the `DM` employs a basis transformation from functions in global vectors to functions in local vectors 2599ca3d3a14SMatthew G. Knepley 2600ca3d3a14SMatthew G. Knepley Input Parameter: 2601ca3d3a14SMatthew G. Knepley . dm - The DM 2602ca3d3a14SMatthew G. Knepley 2603ca3d3a14SMatthew G. Knepley Output Parameter: 2604ca3d3a14SMatthew G. Knepley . flg - PETSC_TRUE if a basis transformation should be done 2605ca3d3a14SMatthew G. Knepley 2606ca3d3a14SMatthew G. Knepley Level: developer 2607ca3d3a14SMatthew G. Knepley 2608bb7acecfSBarry Smith .seealso: `DM`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`, `DMPlexCreateBasisRotation()` 2609ca3d3a14SMatthew G. Knepley @*/ 2610d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasBasisTransform(DM dm, PetscBool *flg) 2611d71ae5a4SJacob Faibussowitsch { 2612ca3d3a14SMatthew G. Knepley Vec tv; 2613ca3d3a14SMatthew G. Knepley 2614ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2615ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2616534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 26179566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 2618ca3d3a14SMatthew G. Knepley *flg = tv ? PETSC_TRUE : PETSC_FALSE; 2619ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 2620ca3d3a14SMatthew G. Knepley } 2621ca3d3a14SMatthew G. Knepley 2622d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConstructBasisTransform_Internal(DM dm) 2623d71ae5a4SJacob Faibussowitsch { 2624ca3d3a14SMatthew G. Knepley PetscSection s, ts; 2625ca3d3a14SMatthew G. Knepley PetscScalar *ta; 2626ca3d3a14SMatthew G. Knepley PetscInt cdim, pStart, pEnd, p, Nf, f, Nc, dof; 2627ca3d3a14SMatthew G. Knepley 2628ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 26299566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 26309566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 26319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 26329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 26339566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->transformDM)); 26349566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm->transformDM, &ts)); 26359566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(ts, Nf)); 26369566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(ts, pStart, pEnd)); 2637ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26389566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(s, f, &Nc)); 2639ca3d3a14SMatthew G. Knepley /* We could start to label fields by their transformation properties */ 2640ca3d3a14SMatthew G. Knepley if (Nc != cdim) continue; 2641ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 26429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, p, f, &dof)); 2643ca3d3a14SMatthew G. Knepley if (!dof) continue; 26449566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(ts, p, f, PetscSqr(cdim))); 26459566063dSJacob Faibussowitsch PetscCall(PetscSectionAddDof(ts, p, PetscSqr(cdim))); 2646ca3d3a14SMatthew G. Knepley } 2647ca3d3a14SMatthew G. Knepley } 26489566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(ts)); 26499566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(dm->transformDM, &dm->transform)); 26509566063dSJacob Faibussowitsch PetscCall(VecGetArray(dm->transform, &ta)); 2651ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 2652ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof)); 2654ca3d3a14SMatthew G. Knepley if (dof) { 2655ca3d3a14SMatthew G. Knepley PetscReal x[3] = {0.0, 0.0, 0.0}; 2656ca3d3a14SMatthew G. Knepley PetscScalar *tva; 2657ca3d3a14SMatthew G. Knepley const PetscScalar *A; 2658ca3d3a14SMatthew G. Knepley 2659ca3d3a14SMatthew G. Knepley /* TODO Get quadrature point for this dual basis vector for coordinate */ 26609566063dSJacob Faibussowitsch PetscCall((*dm->transformGetMatrix)(dm, x, PETSC_TRUE, &A, dm->transformCtx)); 26619566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm->transformDM, p, f, ta, (void *)&tva)); 26629566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tva, A, PetscSqr(cdim))); 2663ca3d3a14SMatthew G. Knepley } 2664ca3d3a14SMatthew G. Knepley } 2665ca3d3a14SMatthew G. Knepley } 26669566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(dm->transform, &ta)); 2667ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 2668ca3d3a14SMatthew G. Knepley } 2669ca3d3a14SMatthew G. Knepley 2670d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyTransform(DM dm, DM newdm) 2671d71ae5a4SJacob Faibussowitsch { 2672ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2673ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2674ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(newdm, DM_CLASSID, 2); 2675ca3d3a14SMatthew G. Knepley newdm->transformCtx = dm->transformCtx; 2676ca3d3a14SMatthew G. Knepley newdm->transformSetUp = dm->transformSetUp; 2677ca3d3a14SMatthew G. Knepley newdm->transformDestroy = NULL; 2678ca3d3a14SMatthew G. Knepley newdm->transformGetMatrix = dm->transformGetMatrix; 26799566063dSJacob Faibussowitsch if (newdm->transformSetUp) PetscCall(DMConstructBasisTransform_Internal(newdm)); 2680ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 2681ca3d3a14SMatthew G. Knepley } 2682ca3d3a14SMatthew G. Knepley 2683bb9467b5SJed Brown /*@C 2684bb7acecfSBarry Smith DMGlobalToLocalHookAdd - adds a callback to be run when `DMGlobalToLocal()` is called 2685baf369e7SPeter Brune 2686bb7acecfSBarry Smith Logically Collective on dm 2687baf369e7SPeter Brune 26884165533cSJose E. Roman Input Parameters: 2689bb7acecfSBarry Smith + dm - the `DM` 2690bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMGlobalToLocalBegin()` 2691bb7acecfSBarry Smith . endhook - function to run after `DMGlobalToLocalEnd()` has completed 26920298fd71SBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be NULL) 2693baf369e7SPeter Brune 2694baf369e7SPeter Brune Calling sequence for beginhook: 2695baf369e7SPeter Brune $ beginhook(DM fine,VecScatter out,VecScatter in,DM coarse,void *ctx) 2696baf369e7SPeter Brune 2697baf369e7SPeter Brune + dm - global DM 2698baf369e7SPeter Brune . g - global vector 2699baf369e7SPeter Brune . mode - mode 2700baf369e7SPeter Brune . l - local vector 2701baf369e7SPeter Brune - ctx - optional user-defined function context 2702baf369e7SPeter Brune 2703baf369e7SPeter Brune Calling sequence for endhook: 2704ec4806b8SPeter Brune $ endhook(DM fine,VecScatter out,VecScatter in,DM coarse,void *ctx) 2705baf369e7SPeter Brune 2706baf369e7SPeter Brune + global - global DM 2707baf369e7SPeter Brune - ctx - optional user-defined function context 2708baf369e7SPeter Brune 2709baf369e7SPeter Brune Level: advanced 2710baf369e7SPeter Brune 2711bb7acecfSBarry Smith Note: 2712bb7acecfSBarry Smith The hook may be used to provide, for example, values that represent boundary conditions in the local vectors that do not exist on the global vector. 2713bb7acecfSBarry Smith 2714bb7acecfSBarry Smith .seealso: `DM`, `DMGlobalToLocal()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2715baf369e7SPeter Brune @*/ 2716d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM, Vec, InsertMode, Vec, void *), PetscErrorCode (*endhook)(DM, Vec, InsertMode, Vec, void *), void *ctx) 2717d71ae5a4SJacob Faibussowitsch { 2718baf369e7SPeter Brune DMGlobalToLocalHookLink link, *p; 2719baf369e7SPeter Brune 2720baf369e7SPeter Brune PetscFunctionBegin; 2721baf369e7SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2722baf369e7SPeter Brune for (p = &dm->gtolhook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 27239566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2724baf369e7SPeter Brune link->beginhook = beginhook; 2725baf369e7SPeter Brune link->endhook = endhook; 2726baf369e7SPeter Brune link->ctx = ctx; 27270298fd71SBarry Smith link->next = NULL; 2728baf369e7SPeter Brune *p = link; 2729baf369e7SPeter Brune PetscFunctionReturn(0); 2730baf369e7SPeter Brune } 2731baf369e7SPeter Brune 2732d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGlobalToLocalHook_Constraints(DM dm, Vec g, InsertMode mode, Vec l, void *ctx) 2733d71ae5a4SJacob Faibussowitsch { 27344c274da1SToby Isaac Mat cMat; 273579769bd5SJed Brown Vec cVec, cBias; 27364c274da1SToby Isaac PetscSection section, cSec; 27374c274da1SToby Isaac PetscInt pStart, pEnd, p, dof; 27384c274da1SToby Isaac 27394c274da1SToby Isaac PetscFunctionBegin; 27404c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 27419566063dSJacob Faibussowitsch PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, &cBias)); 27424c274da1SToby Isaac if (cMat && (mode == INSERT_VALUES || mode == INSERT_ALL_VALUES || mode == INSERT_BC_VALUES)) { 27435db9a05bSToby Isaac PetscInt nRows; 27445db9a05bSToby Isaac 27459566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 27465db9a05bSToby Isaac if (nRows <= 0) PetscFunctionReturn(0); 27479566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 27489566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 27499566063dSJacob Faibussowitsch PetscCall(MatMult(cMat, l, cVec)); 27509566063dSJacob Faibussowitsch if (cBias) PetscCall(VecAXPY(cVec, 1., cBias)); 27519566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 27524c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 27539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 27544c274da1SToby Isaac if (dof) { 27554c274da1SToby Isaac PetscScalar *vals; 27569566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(cVec, cSec, p, &vals)); 27579566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(l, section, p, vals, INSERT_ALL_VALUES)); 27584c274da1SToby Isaac } 27594c274da1SToby Isaac } 27609566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 27614c274da1SToby Isaac } 27624c274da1SToby Isaac PetscFunctionReturn(0); 27634c274da1SToby Isaac } 27644c274da1SToby Isaac 276547c6ae99SBarry Smith /*@ 276601729b5cSPatrick Sanan DMGlobalToLocal - update local vectors from global vector 276701729b5cSPatrick Sanan 2768d083f849SBarry Smith Neighbor-wise Collective on dm 276901729b5cSPatrick Sanan 277001729b5cSPatrick Sanan Input Parameters: 2771bb7acecfSBarry Smith + dm - the `DM` object 277201729b5cSPatrick Sanan . g - the global vector 2773bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 277401729b5cSPatrick Sanan - l - the local vector 277501729b5cSPatrick Sanan 277601729b5cSPatrick Sanan Notes: 2777bb7acecfSBarry Smith The communication involved in this update can be overlapped with computation by instead using 2778bb7acecfSBarry Smith `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()`. 2779bb7acecfSBarry Smith 2780bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 278101729b5cSPatrick Sanan 278201729b5cSPatrick Sanan Level: beginner 278301729b5cSPatrick Sanan 2784bb7acecfSBarry Smith .seealso: `DM`, `DMGlobalToLocalHookAdd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, 2785bb7acecfSBarry Smith `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, 2786bb7acecfSBarry Smith `DMGlobalToLocalBegin()` `DMGlobalToLocalEnd()` 278701729b5cSPatrick Sanan @*/ 2788d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocal(DM dm, Vec g, InsertMode mode, Vec l) 2789d71ae5a4SJacob Faibussowitsch { 279001729b5cSPatrick Sanan PetscFunctionBegin; 27919566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, g, mode, l)); 27929566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, g, mode, l)); 279301729b5cSPatrick Sanan PetscFunctionReturn(0); 279401729b5cSPatrick Sanan } 279501729b5cSPatrick Sanan 279601729b5cSPatrick Sanan /*@ 279747c6ae99SBarry Smith DMGlobalToLocalBegin - Begins updating local vectors from global vector 279847c6ae99SBarry Smith 2799d083f849SBarry Smith Neighbor-wise Collective on dm 280047c6ae99SBarry Smith 280147c6ae99SBarry Smith Input Parameters: 2802bb7acecfSBarry Smith + dm - the `DM` object 280347c6ae99SBarry Smith . g - the global vector 2804bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 280547c6ae99SBarry Smith - l - the local vector 280647c6ae99SBarry Smith 280701729b5cSPatrick Sanan Level: intermediate 280847c6ae99SBarry Smith 2809bb7acecfSBarry Smith Notes: 2810bb7acecfSBarry Smith The operation is completed with `DMGlobalToLocalEnd()` 2811bb7acecfSBarry Smith 2812bb7acecfSBarry Smith One can perform local computations between the `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` to overlap communication and computation 2813bb7acecfSBarry Smith 2814bb7acecfSBarry Smith `DMGlobalToLocal()` is a short form of `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` 2815bb7acecfSBarry Smith 2816bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 2817bb7acecfSBarry Smith 2818bb7acecfSBarry Smith .seealso: `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()` 281947c6ae99SBarry Smith @*/ 2820d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 2821d71ae5a4SJacob Faibussowitsch { 28227128ae9fSMatthew G Knepley PetscSF sf; 2823baf369e7SPeter Brune DMGlobalToLocalHookLink link; 282447c6ae99SBarry Smith 282547c6ae99SBarry Smith PetscFunctionBegin; 2826171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2827baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 28281baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, g, mode, l, link->ctx)); 2829baf369e7SPeter Brune } 28309566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 28317128ae9fSMatthew G Knepley if (sf) { 2832ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2833ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2834d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 28357128ae9fSMatthew G Knepley 28367a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 28379566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 28389566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 28399566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(sf, MPIU_SCALAR, gmtype, gArray, lmtype, lArray, MPI_REPLACE)); 28409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 28419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 28427128ae9fSMatthew G Knepley } else { 28439566063dSJacob Faibussowitsch PetscCall((*dm->ops->globaltolocalbegin)(dm, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l)); 28447128ae9fSMatthew G Knepley } 284547c6ae99SBarry Smith PetscFunctionReturn(0); 284647c6ae99SBarry Smith } 284747c6ae99SBarry Smith 284847c6ae99SBarry Smith /*@ 284947c6ae99SBarry Smith DMGlobalToLocalEnd - Ends updating local vectors from global vector 285047c6ae99SBarry Smith 2851d083f849SBarry Smith Neighbor-wise Collective on dm 285247c6ae99SBarry Smith 285347c6ae99SBarry Smith Input Parameters: 2854bb7acecfSBarry Smith + dm - the `DM` object 285547c6ae99SBarry Smith . g - the global vector 2856bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 285747c6ae99SBarry Smith - l - the local vector 285847c6ae99SBarry Smith 285901729b5cSPatrick Sanan Level: intermediate 286047c6ae99SBarry Smith 2861bb7acecfSBarry Smith Note: 2862bb7acecfSBarry Smith See `DMGlobalToLocalBegin()` for details. 2863bb7acecfSBarry Smith 2864bb7acecfSBarry Smith .seealso: `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()` 286547c6ae99SBarry Smith @*/ 2866d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 2867d71ae5a4SJacob Faibussowitsch { 28687128ae9fSMatthew G Knepley PetscSF sf; 2869ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2870ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2871ca3d3a14SMatthew G. Knepley PetscBool transform; 2872baf369e7SPeter Brune DMGlobalToLocalHookLink link; 2873d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 287447c6ae99SBarry Smith 287547c6ae99SBarry Smith PetscFunctionBegin; 2876171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 28779566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 28789566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 28797128ae9fSMatthew G Knepley if (sf) { 28807a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 28817128ae9fSMatthew G Knepley 28829566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 28839566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 28849566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, gArray, lArray, MPI_REPLACE)); 28859566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 28869566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 28879566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexGlobalToLocalBasis(dm, l)); 28887128ae9fSMatthew G Knepley } else { 28899566063dSJacob Faibussowitsch PetscCall((*dm->ops->globaltolocalend)(dm, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l)); 28907128ae9fSMatthew G Knepley } 28919566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalHook_Constraints(dm, g, mode, l, NULL)); 2892baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 28939566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 2894baf369e7SPeter Brune } 289547c6ae99SBarry Smith PetscFunctionReturn(0); 289647c6ae99SBarry Smith } 289747c6ae99SBarry Smith 2898d4d07f1eSToby Isaac /*@C 2899d4d07f1eSToby Isaac DMLocalToGlobalHookAdd - adds a callback to be run when a local to global is called 2900d4d07f1eSToby Isaac 2901bb7acecfSBarry Smith Logically Collective on dm 2902d4d07f1eSToby Isaac 29034165533cSJose E. Roman Input Parameters: 2904bb7acecfSBarry Smith + dm - the `DM` 2905bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMLocalToGlobalBegin()` 2906bb7acecfSBarry Smith . endhook - function to run after `DMLocalToGlobalEnd()` has completed 2907d4d07f1eSToby Isaac - ctx - [optional] user-defined context for provide data for the hooks (may be NULL) 2908d4d07f1eSToby Isaac 2909d4d07f1eSToby Isaac Calling sequence for beginhook: 2910d4d07f1eSToby Isaac $ beginhook(DM fine,Vec l,InsertMode mode,Vec g,void *ctx) 2911d4d07f1eSToby Isaac 2912bb7acecfSBarry Smith + dm - global `DM` 2913d4d07f1eSToby Isaac . l - local vector 2914d4d07f1eSToby Isaac . mode - mode 2915d4d07f1eSToby Isaac . g - global vector 2916d4d07f1eSToby Isaac - ctx - optional user-defined function context 2917d4d07f1eSToby Isaac 2918d4d07f1eSToby Isaac Calling sequence for endhook: 2919d4d07f1eSToby Isaac $ endhook(DM fine,Vec l,InsertMode mode,Vec g,void *ctx) 2920d4d07f1eSToby Isaac 2921bb7acecfSBarry Smith + global - global `DM` 2922d4d07f1eSToby Isaac . l - local vector 2923d4d07f1eSToby Isaac . mode - mode 2924d4d07f1eSToby Isaac . g - global vector 2925d4d07f1eSToby Isaac - ctx - optional user-defined function context 2926d4d07f1eSToby Isaac 2927d4d07f1eSToby Isaac Level: advanced 2928d4d07f1eSToby Isaac 2929bb7acecfSBarry Smith .seealso: `DMLocalToGlobal()`, `DMRefineHookAdd()`, `DMGlobalToLocalHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2930d4d07f1eSToby Isaac @*/ 2931d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM, Vec, InsertMode, Vec, void *), PetscErrorCode (*endhook)(DM, Vec, InsertMode, Vec, void *), void *ctx) 2932d71ae5a4SJacob Faibussowitsch { 2933d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, *p; 2934d4d07f1eSToby Isaac 2935d4d07f1eSToby Isaac PetscFunctionBegin; 2936d4d07f1eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2937d4d07f1eSToby Isaac for (p = &dm->ltoghook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 29389566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2939d4d07f1eSToby Isaac link->beginhook = beginhook; 2940d4d07f1eSToby Isaac link->endhook = endhook; 2941d4d07f1eSToby Isaac link->ctx = ctx; 2942d4d07f1eSToby Isaac link->next = NULL; 2943d4d07f1eSToby Isaac *p = link; 2944d4d07f1eSToby Isaac PetscFunctionReturn(0); 2945d4d07f1eSToby Isaac } 2946d4d07f1eSToby Isaac 2947d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMLocalToGlobalHook_Constraints(DM dm, Vec l, InsertMode mode, Vec g, void *ctx) 2948d71ae5a4SJacob Faibussowitsch { 29494c274da1SToby Isaac Mat cMat; 29504c274da1SToby Isaac Vec cVec; 29514c274da1SToby Isaac PetscSection section, cSec; 29524c274da1SToby Isaac PetscInt pStart, pEnd, p, dof; 29534c274da1SToby Isaac 29544c274da1SToby Isaac PetscFunctionBegin; 29554c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29569566063dSJacob Faibussowitsch PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, NULL)); 29574c274da1SToby Isaac if (cMat && (mode == ADD_VALUES || mode == ADD_ALL_VALUES || mode == ADD_BC_VALUES)) { 29585db9a05bSToby Isaac PetscInt nRows; 29595db9a05bSToby Isaac 29609566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 29615db9a05bSToby Isaac if (nRows <= 0) PetscFunctionReturn(0); 29629566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 29639566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 29649566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 29654c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 29669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 29674c274da1SToby Isaac if (dof) { 29684c274da1SToby Isaac PetscInt d; 29694c274da1SToby Isaac PetscScalar *vals; 29709566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(l, section, p, &vals)); 29719566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(cVec, cSec, p, vals, mode)); 29724c274da1SToby Isaac /* for this to be the true transpose, we have to zero the values that 29734c274da1SToby Isaac * we just extracted */ 2974ad540459SPierre Jolivet for (d = 0; d < dof; d++) vals[d] = 0.; 29754c274da1SToby Isaac } 29764c274da1SToby Isaac } 29779566063dSJacob Faibussowitsch PetscCall(MatMultTransposeAdd(cMat, cVec, l, l)); 29789566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 29794c274da1SToby Isaac } 29804c274da1SToby Isaac PetscFunctionReturn(0); 29814c274da1SToby Isaac } 298201729b5cSPatrick Sanan /*@ 298301729b5cSPatrick Sanan DMLocalToGlobal - updates global vectors from local vectors 298401729b5cSPatrick Sanan 2985d083f849SBarry Smith Neighbor-wise Collective on dm 298601729b5cSPatrick Sanan 298701729b5cSPatrick Sanan Input Parameters: 2988bb7acecfSBarry Smith + dm - the `DM` object 298901729b5cSPatrick Sanan . l - the local vector 2990bb7acecfSBarry Smith . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 299101729b5cSPatrick Sanan - g - the global vector 299201729b5cSPatrick Sanan 299301729b5cSPatrick Sanan Notes: 299401729b5cSPatrick Sanan The communication involved in this update can be overlapped with computation by using 2995bb7acecfSBarry Smith `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()`. 299601729b5cSPatrick Sanan 2997bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 2998bb7acecfSBarry Smith 2999bb7acecfSBarry Smith `INSERT_VALUES` is not supported for `DMDA`; in that case simply compute the values directly into a global vector instead of a local one. 3000bb7acecfSBarry Smith 3001bb7acecfSBarry Smith Use `DMLocalToGlobalHookAdd()` to add additional operations that are performed on the data during the update process 300201729b5cSPatrick Sanan 300301729b5cSPatrick Sanan Level: beginner 300401729b5cSPatrick Sanan 3005bb7acecfSBarry Smith .seealso: `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`, `DMLocalToGlobalHookAdd()`, `DMGlobaToLocallHookAdd()` 300601729b5cSPatrick Sanan @*/ 3007d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobal(DM dm, Vec l, InsertMode mode, Vec g) 3008d71ae5a4SJacob Faibussowitsch { 300901729b5cSPatrick Sanan PetscFunctionBegin; 30109566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, l, mode, g)); 30119566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, l, mode, g)); 301201729b5cSPatrick Sanan PetscFunctionReturn(0); 301301729b5cSPatrick Sanan } 30144c274da1SToby Isaac 301547c6ae99SBarry Smith /*@ 301601729b5cSPatrick Sanan DMLocalToGlobalBegin - begins updating global vectors from local vectors 30179a42bb27SBarry Smith 3018d083f849SBarry Smith Neighbor-wise Collective on dm 30199a42bb27SBarry Smith 30209a42bb27SBarry Smith Input Parameters: 3021bb7acecfSBarry Smith + dm - the `DM` object 3022f6813fd5SJed Brown . l - the local vector 3023bb7acecfSBarry Smith . mode - `if INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 30241eb28f2eSBarry Smith - g - the global vector 30259a42bb27SBarry Smith 302695452b02SPatrick Sanan Notes: 3027bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 3028bb7acecfSBarry Smith 3029bb7acecfSBarry Smith `INSERT_VALUES is` not supported for `DMDA`, in that case simply compute the values directly into a global vector instead of a local one. 3030bb7acecfSBarry Smith 3031bb7acecfSBarry Smith Use `DMLocalToGlobalEnd()` to complete the communication process. 3032bb7acecfSBarry Smith 3033bb7acecfSBarry Smith `DMLocalToGlobal()` is a short form of `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()` 3034bb7acecfSBarry Smith 3035bb7acecfSBarry Smith `DMLocalToGlobalHookAdd()` may be used to provide additional operations that are performed during the update process. 30369a42bb27SBarry Smith 303701729b5cSPatrick Sanan Level: intermediate 30389a42bb27SBarry Smith 3039bb7acecfSBarry Smith .seealso: `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()` 30409a42bb27SBarry Smith @*/ 3041d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalBegin(DM dm, Vec l, InsertMode mode, Vec g) 3042d71ae5a4SJacob Faibussowitsch { 30437128ae9fSMatthew G Knepley PetscSF sf; 304484330215SMatthew G. Knepley PetscSection s, gs; 3045d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3046ca3d3a14SMatthew G. Knepley Vec tmpl; 3047ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3048ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3049fa88e482SJed Brown PetscBool isInsert, transform, l_inplace = PETSC_FALSE, g_inplace = PETSC_FALSE; 3050d0295fc0SJunchao Zhang PetscMemType lmtype = PETSC_MEMTYPE_HOST, gmtype = PETSC_MEMTYPE_HOST; 30519a42bb27SBarry Smith 30529a42bb27SBarry Smith PetscFunctionBegin; 3053171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3054d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 30551baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, l, mode, g, link->ctx)); 3056d4d07f1eSToby Isaac } 30579566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalHook_Constraints(dm, l, mode, g, NULL)); 30589566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 30599566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 30607128ae9fSMatthew G Knepley switch (mode) { 30617128ae9fSMatthew G Knepley case INSERT_VALUES: 30627128ae9fSMatthew G Knepley case INSERT_ALL_VALUES: 3063d71ae5a4SJacob Faibussowitsch case INSERT_BC_VALUES: 3064d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3065d71ae5a4SJacob Faibussowitsch break; 30667128ae9fSMatthew G Knepley case ADD_VALUES: 30677128ae9fSMatthew G Knepley case ADD_ALL_VALUES: 3068d71ae5a4SJacob Faibussowitsch case ADD_BC_VALUES: 3069d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3070d71ae5a4SJacob Faibussowitsch break; 3071d71ae5a4SJacob Faibussowitsch default: 3072d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 30737128ae9fSMatthew G Knepley } 3074ca3d3a14SMatthew G. Knepley if ((sf && !isInsert) || (s && isInsert)) { 30759566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3076ca3d3a14SMatthew G. Knepley if (transform) { 30779566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 30789566063dSJacob Faibussowitsch PetscCall(VecCopy(l, tmpl)); 30799566063dSJacob Faibussowitsch PetscCall(DMPlexLocalToGlobalBasis(dm, tmpl)); 30809566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3081fa88e482SJed Brown } else if (isInsert) { 30829566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l, &lArray)); 3083fa88e482SJed Brown } else { 30849566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, &lmtype)); 3085fa88e482SJed Brown l_inplace = PETSC_TRUE; 3086ca3d3a14SMatthew G. Knepley } 3087fa88e482SJed Brown if (s && isInsert) { 30889566063dSJacob Faibussowitsch PetscCall(VecGetArray(g, &gArray)); 3089fa88e482SJed Brown } else { 30909566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, &gmtype)); 3091fa88e482SJed Brown g_inplace = PETSC_TRUE; 3092fa88e482SJed Brown } 3093ca3d3a14SMatthew G. Knepley if (sf && !isInsert) { 30949566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(sf, MPIU_SCALAR, lmtype, lArray, gmtype, gArray, MPIU_SUM)); 309584330215SMatthew G. Knepley } else if (s && isInsert) { 309684330215SMatthew G. Knepley PetscInt gStart, pStart, pEnd, p; 309784330215SMatthew G. Knepley 30989566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gs)); 30999566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 31009566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(g, &gStart, NULL)); 310184330215SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 3102b3b16f48SMatthew G. Knepley PetscInt dof, gdof, cdof, gcdof, off, goff, d, e; 310384330215SMatthew G. Knepley 31049566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s, p, &dof)); 31059566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(gs, p, &gdof)); 31069566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s, p, &cdof)); 31079566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(gs, p, &gcdof)); 31089566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(s, p, &off)); 31099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(gs, p, &goff)); 3110b3b16f48SMatthew G. Knepley /* Ignore off-process data and points with no global data */ 311103442857SMatthew G. Knepley if (!gdof || goff < 0) continue; 31127a8be351SBarry Smith PetscCheck(dof == gdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 3113b3b16f48SMatthew G. Knepley /* If no constraints are enforced in the global vector */ 3114b3b16f48SMatthew G. Knepley if (!gcdof) { 311584330215SMatthew G. Knepley for (d = 0; d < dof; ++d) gArray[goff - gStart + d] = lArray[off + d]; 3116b3b16f48SMatthew G. Knepley /* If constraints are enforced in the global vector */ 3117b3b16f48SMatthew G. Knepley } else if (cdof == gcdof) { 311884330215SMatthew G. Knepley const PetscInt *cdofs; 311984330215SMatthew G. Knepley PetscInt cind = 0; 312084330215SMatthew G. Knepley 31219566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(s, p, &cdofs)); 3122b3b16f48SMatthew G. Knepley for (d = 0, e = 0; d < dof; ++d) { 31239371c9d4SSatish Balay if ((cind < cdof) && (d == cdofs[cind])) { 31249371c9d4SSatish Balay ++cind; 31259371c9d4SSatish Balay continue; 31269371c9d4SSatish Balay } 3127b3b16f48SMatthew G. Knepley gArray[goff - gStart + e++] = lArray[off + d]; 312884330215SMatthew G. Knepley } 31297a8be351SBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 313084330215SMatthew G. Knepley } 3131ca3d3a14SMatthew G. Knepley } 3132fa88e482SJed Brown if (g_inplace) { 31339566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 3134fa88e482SJed Brown } else { 31359566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(g, &gArray)); 3136fa88e482SJed Brown } 3137ca3d3a14SMatthew G. Knepley if (transform) { 31389566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 31399566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3140fa88e482SJed Brown } else if (l_inplace) { 31419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3142ca3d3a14SMatthew G. Knepley } else { 31439566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l, &lArray)); 3144ca3d3a14SMatthew G. Knepley } 31457128ae9fSMatthew G Knepley } else { 31469566063dSJacob Faibussowitsch PetscCall((*dm->ops->localtoglobalbegin)(dm, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g)); 31477128ae9fSMatthew G Knepley } 31489a42bb27SBarry Smith PetscFunctionReturn(0); 31499a42bb27SBarry Smith } 31509a42bb27SBarry Smith 31519a42bb27SBarry Smith /*@ 31529a42bb27SBarry Smith DMLocalToGlobalEnd - updates global vectors from local vectors 315347c6ae99SBarry Smith 3154d083f849SBarry Smith Neighbor-wise Collective on dm 315547c6ae99SBarry Smith 315647c6ae99SBarry Smith Input Parameters: 3157bb7acecfSBarry Smith + dm - the `DM` object 3158f6813fd5SJed Brown . l - the local vector 3159bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 3160f6813fd5SJed Brown - g - the global vector 316147c6ae99SBarry Smith 316201729b5cSPatrick Sanan Level: intermediate 316347c6ae99SBarry Smith 3164bb7acecfSBarry Smith Note: 3165bb7acecfSBarry Smith See `DMLocalToGlobalBegin()` for full details 3166bb7acecfSBarry Smith 3167bb7acecfSBarry Smith .seealso: `DMLocalToGlobalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalEnd()` 316847c6ae99SBarry Smith @*/ 3169d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalEnd(DM dm, Vec l, InsertMode mode, Vec g) 3170d71ae5a4SJacob Faibussowitsch { 31717128ae9fSMatthew G Knepley PetscSF sf; 317284330215SMatthew G. Knepley PetscSection s; 3173d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3174ca3d3a14SMatthew G. Knepley PetscBool isInsert, transform; 317547c6ae99SBarry Smith 317647c6ae99SBarry Smith PetscFunctionBegin; 3177171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 31789566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 31799566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 31807128ae9fSMatthew G Knepley switch (mode) { 31817128ae9fSMatthew G Knepley case INSERT_VALUES: 3182d71ae5a4SJacob Faibussowitsch case INSERT_ALL_VALUES: 3183d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3184d71ae5a4SJacob Faibussowitsch break; 31857128ae9fSMatthew G Knepley case ADD_VALUES: 3186d71ae5a4SJacob Faibussowitsch case ADD_ALL_VALUES: 3187d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3188d71ae5a4SJacob Faibussowitsch break; 3189d71ae5a4SJacob Faibussowitsch default: 3190d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 31917128ae9fSMatthew G Knepley } 319284330215SMatthew G. Knepley if (sf && !isInsert) { 3193ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3194ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3195ca3d3a14SMatthew G. Knepley Vec tmpl; 319684330215SMatthew G. Knepley 31979566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3198ca3d3a14SMatthew G. Knepley if (transform) { 31999566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 32009566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3201ca3d3a14SMatthew G. Knepley } else { 32029566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, NULL)); 3203ca3d3a14SMatthew G. Knepley } 32049566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, NULL)); 32059566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_SCALAR, lArray, gArray, MPIU_SUM)); 3206ca3d3a14SMatthew G. Knepley if (transform) { 32079566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 32089566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3209ca3d3a14SMatthew G. Knepley } else { 32109566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3211ca3d3a14SMatthew G. Knepley } 32129566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 321384330215SMatthew G. Knepley } else if (s && isInsert) { 32147128ae9fSMatthew G Knepley } else { 32159566063dSJacob Faibussowitsch PetscCall((*dm->ops->localtoglobalend)(dm, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g)); 32167128ae9fSMatthew G Knepley } 3217d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 32189566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 3219d4d07f1eSToby Isaac } 322047c6ae99SBarry Smith PetscFunctionReturn(0); 322147c6ae99SBarry Smith } 322247c6ae99SBarry Smith 3223f089877aSRichard Tran Mills /*@ 3224bb7acecfSBarry Smith DMLocalToLocalBegin - Begins the process of mapping values from a local vector (that include ghost points 3225bc0a1609SRichard Tran Mills that contain irrelevant values) to another local vector where the ghost 3226bb7acecfSBarry Smith points in the second are set correctly from values on other MPI ranks. Must be followed by `DMLocalToLocalEnd()`. 3227f089877aSRichard Tran Mills 3228d083f849SBarry Smith Neighbor-wise Collective on dm 3229f089877aSRichard Tran Mills 3230f089877aSRichard Tran Mills Input Parameters: 3231bb7acecfSBarry Smith + dm - the `DM` object 3232bc0a1609SRichard Tran Mills . g - the original local vector 3233bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3234f089877aSRichard Tran Mills 3235bc0a1609SRichard Tran Mills Output Parameter: 3236bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3237f089877aSRichard Tran Mills 3238f089877aSRichard Tran Mills Level: intermediate 3239f089877aSRichard Tran Mills 3240bb7acecfSBarry Smith .seealso: `DMLocalToLocalEnd(), `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMLocalToLocalEnd()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3241f089877aSRichard Tran Mills @*/ 3242d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 3243d71ae5a4SJacob Faibussowitsch { 3244f089877aSRichard Tran Mills PetscFunctionBegin; 3245f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32469f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 32479f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 32489f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 3249f089877aSRichard Tran Mills PetscFunctionReturn(0); 3250f089877aSRichard Tran Mills } 3251f089877aSRichard Tran Mills 3252f089877aSRichard Tran Mills /*@ 3253bb7acecfSBarry Smith DMLocalToLocalEnd - Maps from a local vector to another local vector where the ghost 3254bb7acecfSBarry Smith points in the second are set correctly. Must be preceded by `DMLocalToLocalBegin()`. 3255f089877aSRichard Tran Mills 3256d083f849SBarry Smith Neighbor-wise Collective on dm 3257f089877aSRichard Tran Mills 3258f089877aSRichard Tran Mills Input Parameters: 3259bb7acecfSBarry Smith + da - the `DM` object 3260bc0a1609SRichard Tran Mills . g - the original local vector 3261bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3262f089877aSRichard Tran Mills 3263bc0a1609SRichard Tran Mills Output Parameter: 3264bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3265f089877aSRichard Tran Mills 3266f089877aSRichard Tran Mills Level: intermediate 3267f089877aSRichard Tran Mills 3268bb7acecfSBarry Smith .seealso: `DMLocalToLocalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMLocalToLocalBegin()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3269f089877aSRichard Tran Mills @*/ 3270d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 3271d71ae5a4SJacob Faibussowitsch { 3272f089877aSRichard Tran Mills PetscFunctionBegin; 3273f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32749f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 32759f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 32769f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 3277f089877aSRichard Tran Mills PetscFunctionReturn(0); 3278f089877aSRichard Tran Mills } 3279f089877aSRichard Tran Mills 328047c6ae99SBarry Smith /*@ 3281bb7acecfSBarry Smith DMCoarsen - Coarsens a `DM` object using a standard, non-adaptive coarsening of the underlying mesh 328247c6ae99SBarry Smith 3283d083f849SBarry Smith Collective on dm 328447c6ae99SBarry Smith 3285d8d19677SJose E. Roman Input Parameters: 3286bb7acecfSBarry Smith + dm - the `DM` object 3287bb7acecfSBarry Smith - comm - the communicator to contain the new `DM` object (or MPI_COMM_NULL) 328847c6ae99SBarry Smith 328947c6ae99SBarry Smith Output Parameter: 3290bb7acecfSBarry Smith . dmc - the coarsened `DM` 329147c6ae99SBarry Smith 329247c6ae99SBarry Smith Level: developer 329347c6ae99SBarry Smith 3294bb7acecfSBarry Smith .seealso: `DM`, `DMRefine()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 329547c6ae99SBarry Smith @*/ 3296d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsen(DM dm, MPI_Comm comm, DM *dmc) 3297d71ae5a4SJacob Faibussowitsch { 3298b17ce1afSJed Brown DMCoarsenHookLink link; 329947c6ae99SBarry Smith 330047c6ae99SBarry Smith PetscFunctionBegin; 3301171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 33029566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Coarsen, dm, 0, 0, 0)); 3303dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, coarsen, comm, dmc); 3304b9d85ea2SLisandro Dalcin if (*dmc) { 3305a3574896SRichard Tran Mills (*dmc)->bind_below = dm->bind_below; /* Propagate this from parent DM; otherwise -dm_bind_below will be useless for multigrid cases. */ 33069566063dSJacob Faibussowitsch PetscCall(DMSetCoarseDM(dm, *dmc)); 330743842a1eSJed Brown (*dmc)->ops->creatematrix = dm->ops->creatematrix; 33089566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmc)); 3309644e2e5bSBarry Smith (*dmc)->ctx = dm->ctx; 33100598a293SJed Brown (*dmc)->levelup = dm->levelup; 3311656b349aSBarry Smith (*dmc)->leveldown = dm->leveldown + 1; 33129566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmc, dm->mattype)); 3313b17ce1afSJed Brown for (link = dm->coarsenhook; link; link = link->next) { 33149566063dSJacob Faibussowitsch if (link->coarsenhook) PetscCall((*link->coarsenhook)(dm, *dmc, link->ctx)); 3315b17ce1afSJed Brown } 3316b9d85ea2SLisandro Dalcin } 33179566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Coarsen, dm, 0, 0, 0)); 33187a8be351SBarry Smith PetscCheck(*dmc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "NULL coarse mesh produced"); 3319b17ce1afSJed Brown PetscFunctionReturn(0); 3320b17ce1afSJed Brown } 3321b17ce1afSJed Brown 3322bb9467b5SJed Brown /*@C 3323b17ce1afSJed Brown DMCoarsenHookAdd - adds a callback to be run when restricting a nonlinear problem to the coarse grid 3324b17ce1afSJed Brown 3325bb7acecfSBarry Smith Logically Collective on fine 3326b17ce1afSJed Brown 33274165533cSJose E. Roman Input Parameters: 3328bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3329b17ce1afSJed Brown . coarsenhook - function to run when setting up a coarser level 3330bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels (called once per `SNESSolve()`) 33310298fd71SBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be NULL) 3332b17ce1afSJed Brown 3333b17ce1afSJed Brown Calling sequence of coarsenhook: 3334b17ce1afSJed Brown $ coarsenhook(DM fine,DM coarse,void *ctx); 3335b17ce1afSJed Brown 3336bb7acecfSBarry Smith + fine - fine level `DM` 3337bb7acecfSBarry Smith . coarse - coarse level `DM` to restrict problem to 3338b17ce1afSJed Brown - ctx - optional user-defined function context 3339b17ce1afSJed Brown 3340b17ce1afSJed Brown Calling sequence for restricthook: 3341c833c3b5SJed Brown $ restricthook(DM fine,Mat mrestrict,Vec rscale,Mat inject,DM coarse,void *ctx) 3342bb7acecfSBarry Smith $ 3343bb7acecfSBarry Smith + fine - fine level `DM` 3344bb7acecfSBarry Smith . mrestrict - matrix restricting a fine-level solution to the coarse grid, usually the transpose of the interpolation 3345c833c3b5SJed Brown . rscale - scaling vector for restriction 3346c833c3b5SJed Brown . inject - matrix restricting by injection 3347b17ce1afSJed Brown . coarse - coarse level DM to update 3348b17ce1afSJed Brown - ctx - optional user-defined function context 3349b17ce1afSJed Brown 3350b17ce1afSJed Brown Level: advanced 3351b17ce1afSJed Brown 3352b17ce1afSJed Brown Notes: 3353bb7acecfSBarry Smith This function is only needed if auxiliary data, attached to the `DM` with `PetscObjectCompose()`, needs to be set up or passed from the fine `DM` to the coarse `DM`. 3354b17ce1afSJed Brown 3355b17ce1afSJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 3356b17ce1afSJed Brown 3357b17ce1afSJed Brown In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3358bb7acecfSBarry Smith extract the finest level information from its context (instead of from the `SNES`). 3359b17ce1afSJed Brown 3360bb7acecfSBarry Smith The hooks are automatically called by `DMRestrict()` 3361bb7acecfSBarry Smith 3362bb7acecfSBarry Smith Fortran Note: 3363bb7acecfSBarry Smith This function is not available from Fortran. 3364bb9467b5SJed Brown 3365db781477SPatrick Sanan .seealso: `DMCoarsenHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3366b17ce1afSJed Brown @*/ 3367d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookAdd(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx) 3368d71ae5a4SJacob Faibussowitsch { 3369b17ce1afSJed Brown DMCoarsenHookLink link, *p; 3370b17ce1afSJed Brown 3371b17ce1afSJed Brown PetscFunctionBegin; 3372b17ce1afSJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 33731e3d8eccSJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 33741e3d8eccSJed Brown if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(0); 33751e3d8eccSJed Brown } 33769566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 3377b17ce1afSJed Brown link->coarsenhook = coarsenhook; 3378b17ce1afSJed Brown link->restricthook = restricthook; 3379b17ce1afSJed Brown link->ctx = ctx; 33800298fd71SBarry Smith link->next = NULL; 3381b17ce1afSJed Brown *p = link; 3382b17ce1afSJed Brown PetscFunctionReturn(0); 3383b17ce1afSJed Brown } 3384b17ce1afSJed Brown 3385dc822a44SJed Brown /*@C 3386bb7acecfSBarry Smith DMCoarsenHookRemove - remove a callback set with `DMCoarsenHookAdd()` 3387dc822a44SJed Brown 3388bb7acecfSBarry Smith Logically Collective on fine 3389dc822a44SJed Brown 33904165533cSJose E. Roman Input Parameters: 3391bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3392dc822a44SJed Brown . coarsenhook - function to run when setting up a coarser level 3393bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels 3394dc822a44SJed Brown - ctx - [optional] user-defined context for provide data for the hooks (may be NULL) 3395dc822a44SJed Brown 3396dc822a44SJed Brown Level: advanced 3397dc822a44SJed Brown 3398bb7acecfSBarry Smith Note: 3399dc822a44SJed Brown This function does nothing if the hook is not in the list. 3400dc822a44SJed Brown 3401bb7acecfSBarry Smith Fortran Note: 3402bb7acecfSBarry Smith This function is not available from Fortran. 3403dc822a44SJed Brown 3404db781477SPatrick Sanan .seealso: `DMCoarsenHookAdd()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3405dc822a44SJed Brown @*/ 3406d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookRemove(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx) 3407d71ae5a4SJacob Faibussowitsch { 3408dc822a44SJed Brown DMCoarsenHookLink link, *p; 3409dc822a44SJed Brown 3410dc822a44SJed Brown PetscFunctionBegin; 3411dc822a44SJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 3412dc822a44SJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3413dc822a44SJed Brown if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3414dc822a44SJed Brown link = *p; 3415dc822a44SJed Brown *p = link->next; 34169566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3417dc822a44SJed Brown break; 3418dc822a44SJed Brown } 3419dc822a44SJed Brown } 3420dc822a44SJed Brown PetscFunctionReturn(0); 3421dc822a44SJed Brown } 3422dc822a44SJed Brown 3423b17ce1afSJed Brown /*@ 3424bb7acecfSBarry Smith DMRestrict - restricts user-defined problem data to a coarser `DM` by running hooks registered by `DMCoarsenHookAdd()` 3425b17ce1afSJed Brown 3426b17ce1afSJed Brown Collective if any hooks are 3427b17ce1afSJed Brown 34284165533cSJose E. Roman Input Parameters: 3429bb7acecfSBarry Smith + fine - finer `DM` from which the data is obtained 3430bb7acecfSBarry Smith . restrct - restriction matrix, apply using `MatRestrict()`, usually the transpose of the interpolation 3431e91eccc2SStefano Zampini . rscale - scaling vector for restriction 3432bb7acecfSBarry Smith . inject - injection matrix, also use `MatRestrict()` 3433e91eccc2SStefano Zampini - coarse - coarser DM to update 3434b17ce1afSJed Brown 3435b17ce1afSJed Brown Level: developer 3436b17ce1afSJed Brown 3437bb7acecfSBarry Smith Developer Note: 3438bb7acecfSBarry Smith Though this routine is called `DMRestrict()` the hooks are added with `DMCoarsenHookAdd()`, a consistent terminology would be better 3439bb7acecfSBarry Smith 3440bb7acecfSBarry Smith .seealso: `DMCoarsenHookAdd()`, `MatRestrict()`, `DMInterpolate()`, `DMRefineHookAdd()` 3441b17ce1afSJed Brown @*/ 3442d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestrict(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse) 3443d71ae5a4SJacob Faibussowitsch { 3444b17ce1afSJed Brown DMCoarsenHookLink link; 3445b17ce1afSJed Brown 3446b17ce1afSJed Brown PetscFunctionBegin; 3447b17ce1afSJed Brown for (link = fine->coarsenhook; link; link = link->next) { 34481baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(fine, restrct, rscale, inject, coarse, link->ctx)); 3449b17ce1afSJed Brown } 345047c6ae99SBarry Smith PetscFunctionReturn(0); 345147c6ae99SBarry Smith } 345247c6ae99SBarry Smith 3453bb9467b5SJed Brown /*@C 3454be081cd6SPeter Brune DMSubDomainHookAdd - adds a callback to be run when restricting a problem to the coarse grid 34555dbd56e3SPeter Brune 3456d083f849SBarry Smith Logically Collective on global 34575dbd56e3SPeter Brune 34584165533cSJose E. Roman Input Parameters: 3459bb7acecfSBarry Smith + global - global `DM` 3460bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 34615dbd56e3SPeter Brune . restricthook - function to run to update data on block solve (at the beginning of the block solve) 34620298fd71SBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be NULL) 34635dbd56e3SPeter Brune 3464ec4806b8SPeter Brune Calling sequence for ddhook: 3465ec4806b8SPeter Brune $ ddhook(DM global,DM block,void *ctx) 3466ec4806b8SPeter Brune 3467bb7acecfSBarry Smith + global - global `DM` 3468bb7acecfSBarry Smith . block - block `DM` 3469ec4806b8SPeter Brune - ctx - optional user-defined function context 3470ec4806b8SPeter Brune 34715dbd56e3SPeter Brune Calling sequence for restricthook: 3472ec4806b8SPeter Brune $ restricthook(DM global,VecScatter out,VecScatter in,DM block,void *ctx) 34735dbd56e3SPeter Brune 3474bb7acecfSBarry Smith + global - global `DM` 34755dbd56e3SPeter Brune . out - scatter to the outer (with ghost and overlap points) block vector 34765dbd56e3SPeter Brune . in - scatter to block vector values only owned locally 3477bb7acecfSBarry Smith . block - block `DM` 34785dbd56e3SPeter Brune - ctx - optional user-defined function context 34795dbd56e3SPeter Brune 34805dbd56e3SPeter Brune Level: advanced 34815dbd56e3SPeter Brune 34825dbd56e3SPeter Brune Notes: 3483bb7acecfSBarry Smith This function is only needed if auxiliary data needs to be set up on subdomain `DM`s. 34845dbd56e3SPeter Brune 34855dbd56e3SPeter Brune If this function is called multiple times, the hooks will be run in the order they are added. 34865dbd56e3SPeter Brune 34875dbd56e3SPeter Brune In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3488bb7acecfSBarry Smith extract the global information from its context (instead of from the `SNES`). 34895dbd56e3SPeter Brune 3490bb7acecfSBarry Smith Fortran Note: 3491bb7acecfSBarry Smith This function is not available from Fortran. 3492bb9467b5SJed Brown 3493bb7acecfSBarry Smith .seealso: `DMSubDomainHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 34945dbd56e3SPeter Brune @*/ 3495d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookAdd(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx) 3496d71ae5a4SJacob Faibussowitsch { 3497be081cd6SPeter Brune DMSubDomainHookLink link, *p; 34985dbd56e3SPeter Brune 34995dbd56e3SPeter Brune PetscFunctionBegin; 35005dbd56e3SPeter Brune PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3501b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 3502b3a6b972SJed Brown if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(0); 3503b3a6b972SJed Brown } 35049566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 35055dbd56e3SPeter Brune link->restricthook = restricthook; 3506be081cd6SPeter Brune link->ddhook = ddhook; 35075dbd56e3SPeter Brune link->ctx = ctx; 35080298fd71SBarry Smith link->next = NULL; 35095dbd56e3SPeter Brune *p = link; 35105dbd56e3SPeter Brune PetscFunctionReturn(0); 35115dbd56e3SPeter Brune } 35125dbd56e3SPeter Brune 3513b3a6b972SJed Brown /*@C 3514b3a6b972SJed Brown DMSubDomainHookRemove - remove a callback from the list to be run when restricting a problem to the coarse grid 3515b3a6b972SJed Brown 3516bb7acecfSBarry Smith Logically Collective on global 3517b3a6b972SJed Brown 35184165533cSJose E. Roman Input Parameters: 3519bb7acecfSBarry Smith + global - global `DM` 3520bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 3521b3a6b972SJed Brown . restricthook - function to run to update data on block solve (at the beginning of the block solve) 3522b3a6b972SJed Brown - ctx - [optional] user-defined context for provide data for the hooks (may be NULL) 3523b3a6b972SJed Brown 3524b3a6b972SJed Brown Level: advanced 3525b3a6b972SJed Brown 3526bb7acecfSBarry Smith Fortran Note: 3527bb7acecfSBarry Smith This function is not available from Fortran. 3528b3a6b972SJed Brown 3529db781477SPatrick Sanan .seealso: `DMSubDomainHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3530b3a6b972SJed Brown @*/ 3531d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookRemove(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx) 3532d71ae5a4SJacob Faibussowitsch { 3533b3a6b972SJed Brown DMSubDomainHookLink link, *p; 3534b3a6b972SJed Brown 3535b3a6b972SJed Brown PetscFunctionBegin; 3536b3a6b972SJed Brown PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3537b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3538b3a6b972SJed Brown if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3539b3a6b972SJed Brown link = *p; 3540b3a6b972SJed Brown *p = link->next; 35419566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3542b3a6b972SJed Brown break; 3543b3a6b972SJed Brown } 3544b3a6b972SJed Brown } 3545b3a6b972SJed Brown PetscFunctionReturn(0); 3546b3a6b972SJed Brown } 3547b3a6b972SJed Brown 35485dbd56e3SPeter Brune /*@ 3549bb7acecfSBarry Smith DMSubDomainRestrict - restricts user-defined problem data to a block `DM` by running hooks registered by `DMSubDomainHookAdd()` 35505dbd56e3SPeter Brune 35515dbd56e3SPeter Brune Collective if any hooks are 35525dbd56e3SPeter Brune 35534165533cSJose E. Roman Input Parameters: 3554bb7acecfSBarry Smith + fine - finer `DM` to use as a base 3555be081cd6SPeter Brune . oscatter - scatter from domain global vector filling subdomain global vector with overlap 3556be081cd6SPeter Brune . gscatter - scatter from domain global vector filling subdomain local vector with ghosts 3557bb7acecfSBarry Smith - coarse - coarser `DM` to update 35585dbd56e3SPeter Brune 35595dbd56e3SPeter Brune Level: developer 35605dbd56e3SPeter Brune 3561db781477SPatrick Sanan .seealso: `DMCoarsenHookAdd()`, `MatRestrict()` 35625dbd56e3SPeter Brune @*/ 3563d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainRestrict(DM global, VecScatter oscatter, VecScatter gscatter, DM subdm) 3564d71ae5a4SJacob Faibussowitsch { 3565be081cd6SPeter Brune DMSubDomainHookLink link; 35665dbd56e3SPeter Brune 35675dbd56e3SPeter Brune PetscFunctionBegin; 3568be081cd6SPeter Brune for (link = global->subdomainhook; link; link = link->next) { 35691baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(global, oscatter, gscatter, subdm, link->ctx)); 35705dbd56e3SPeter Brune } 35715dbd56e3SPeter Brune PetscFunctionReturn(0); 35725dbd56e3SPeter Brune } 35735dbd56e3SPeter Brune 35745fe1f584SPeter Brune /*@ 3575bb7acecfSBarry Smith DMGetCoarsenLevel - Gets the number of coarsenings that have generated this `DM`. 35765fe1f584SPeter Brune 35775fe1f584SPeter Brune Not Collective 35785fe1f584SPeter Brune 35795fe1f584SPeter Brune Input Parameter: 3580bb7acecfSBarry Smith . dm - the `DM` object 35815fe1f584SPeter Brune 35825fe1f584SPeter Brune Output Parameter: 35836a7d9d85SPeter Brune . level - number of coarsenings 35845fe1f584SPeter Brune 35855fe1f584SPeter Brune Level: developer 35865fe1f584SPeter Brune 3587bb7acecfSBarry Smith .seealso: `DMCoarsen()`, `DMSetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 35885fe1f584SPeter Brune @*/ 3589d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarsenLevel(DM dm, PetscInt *level) 3590d71ae5a4SJacob Faibussowitsch { 35915fe1f584SPeter Brune PetscFunctionBegin; 35925fe1f584SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3593b9d85ea2SLisandro Dalcin PetscValidIntPointer(level, 2); 35945fe1f584SPeter Brune *level = dm->leveldown; 35955fe1f584SPeter Brune PetscFunctionReturn(0); 35965fe1f584SPeter Brune } 35975fe1f584SPeter Brune 35989a64c4a8SMatthew G. Knepley /*@ 3599bb7acecfSBarry Smith DMSetCoarsenLevel - Sets the number of coarsenings that have generated this `DM`. 36009a64c4a8SMatthew G. Knepley 3601bb7acecfSBarry Smith Collective on dm 36029a64c4a8SMatthew G. Knepley 36039a64c4a8SMatthew G. Knepley Input Parameters: 3604bb7acecfSBarry Smith + dm - the `DM` object 36059a64c4a8SMatthew G. Knepley - level - number of coarsenings 36069a64c4a8SMatthew G. Knepley 36079a64c4a8SMatthew G. Knepley Level: developer 36089a64c4a8SMatthew G. Knepley 3609bb7acecfSBarry Smith Note: 3610bb7acecfSBarry Smith This is rarely used directly, the information is automatically set when a `DM` is created with `DMCoarsen()` 3611bb7acecfSBarry Smith 3612bb7acecfSBarry Smith .seealso: `DMSetCoarsenLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 36139a64c4a8SMatthew G. Knepley @*/ 3614d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarsenLevel(DM dm, PetscInt level) 3615d71ae5a4SJacob Faibussowitsch { 36169a64c4a8SMatthew G. Knepley PetscFunctionBegin; 36179a64c4a8SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36189a64c4a8SMatthew G. Knepley dm->leveldown = level; 36199a64c4a8SMatthew G. Knepley PetscFunctionReturn(0); 36209a64c4a8SMatthew G. Knepley } 36219a64c4a8SMatthew G. Knepley 362247c6ae99SBarry Smith /*@C 3623bb7acecfSBarry Smith DMRefineHierarchy - Refines a `DM` object, all levels at once 362447c6ae99SBarry Smith 3625d083f849SBarry Smith Collective on dm 362647c6ae99SBarry Smith 3627d8d19677SJose E. Roman Input Parameters: 3628bb7acecfSBarry Smith + dm - the `DM` object 362947c6ae99SBarry Smith - nlevels - the number of levels of refinement 363047c6ae99SBarry Smith 363147c6ae99SBarry Smith Output Parameter: 3632bb7acecfSBarry Smith . dmf - the refined `DM` hierarchy 363347c6ae99SBarry Smith 363447c6ae99SBarry Smith Level: developer 363547c6ae99SBarry Smith 3636bb7acecfSBarry Smith .seealso: `DMCoarsen()`, `DMCoarsenHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 363747c6ae99SBarry Smith @*/ 3638d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHierarchy(DM dm, PetscInt nlevels, DM dmf[]) 3639d71ae5a4SJacob Faibussowitsch { 364047c6ae99SBarry Smith PetscFunctionBegin; 3641171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36427a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 364347c6ae99SBarry Smith if (nlevels == 0) PetscFunctionReturn(0); 3644b9d85ea2SLisandro Dalcin PetscValidPointer(dmf, 3); 364547c6ae99SBarry Smith if (dm->ops->refinehierarchy) { 3646dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, refinehierarchy, nlevels, dmf); 364747c6ae99SBarry Smith } else if (dm->ops->refine) { 364847c6ae99SBarry Smith PetscInt i; 364947c6ae99SBarry Smith 36509566063dSJacob Faibussowitsch PetscCall(DMRefine(dm, PetscObjectComm((PetscObject)dm), &dmf[0])); 365148a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMRefine(dmf[i - 1], PetscObjectComm((PetscObject)dm), &dmf[i])); 3652ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No RefineHierarchy for this DM yet"); 365347c6ae99SBarry Smith PetscFunctionReturn(0); 365447c6ae99SBarry Smith } 365547c6ae99SBarry Smith 365647c6ae99SBarry Smith /*@C 3657bb7acecfSBarry Smith DMCoarsenHierarchy - Coarsens a `DM` object, all levels at once 365847c6ae99SBarry Smith 3659d083f849SBarry Smith Collective on dm 366047c6ae99SBarry Smith 3661d8d19677SJose E. Roman Input Parameters: 3662bb7acecfSBarry Smith + dm - the `DM` object 366347c6ae99SBarry Smith - nlevels - the number of levels of coarsening 366447c6ae99SBarry Smith 366547c6ae99SBarry Smith Output Parameter: 3666bb7acecfSBarry Smith . dmc - the coarsened `DM` hierarchy 366747c6ae99SBarry Smith 366847c6ae99SBarry Smith Level: developer 366947c6ae99SBarry Smith 3670bb7acecfSBarry Smith .seealso: `DMCoarsen()`, `DMRefineHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 367147c6ae99SBarry Smith @*/ 3672d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHierarchy(DM dm, PetscInt nlevels, DM dmc[]) 3673d71ae5a4SJacob Faibussowitsch { 367447c6ae99SBarry Smith PetscFunctionBegin; 3675171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36767a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 367747c6ae99SBarry Smith if (nlevels == 0) PetscFunctionReturn(0); 367847c6ae99SBarry Smith PetscValidPointer(dmc, 3); 367947c6ae99SBarry Smith if (dm->ops->coarsenhierarchy) { 3680dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, coarsenhierarchy, nlevels, dmc); 368147c6ae99SBarry Smith } else if (dm->ops->coarsen) { 368247c6ae99SBarry Smith PetscInt i; 368347c6ae99SBarry Smith 36849566063dSJacob Faibussowitsch PetscCall(DMCoarsen(dm, PetscObjectComm((PetscObject)dm), &dmc[0])); 368548a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMCoarsen(dmc[i - 1], PetscObjectComm((PetscObject)dm), &dmc[i])); 3686ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No CoarsenHierarchy for this DM yet"); 368747c6ae99SBarry Smith PetscFunctionReturn(0); 368847c6ae99SBarry Smith } 368947c6ae99SBarry Smith 36901a266240SBarry Smith /*@C 3691bb7acecfSBarry Smith DMSetApplicationContextDestroy - Sets a user function that will be called to destroy the application context when the `DM` is destroyed 36921a266240SBarry Smith 3693bb7acecfSBarry Smith Logically Collective if the function is collective 36941a266240SBarry Smith 36951a266240SBarry Smith Input Parameters: 3696bb7acecfSBarry Smith + dm - the `DM` object 36971a266240SBarry Smith - destroy - the destroy function 36981a266240SBarry Smith 36991a266240SBarry Smith Level: intermediate 37001a266240SBarry Smith 3701bb7acecfSBarry Smith .seealso: `DMSetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 3702f07f9ceaSJed Brown @*/ 3703d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContextDestroy(DM dm, PetscErrorCode (*destroy)(void **)) 3704d71ae5a4SJacob Faibussowitsch { 37051a266240SBarry Smith PetscFunctionBegin; 3706171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37071a266240SBarry Smith dm->ctxdestroy = destroy; 37081a266240SBarry Smith PetscFunctionReturn(0); 37091a266240SBarry Smith } 37101a266240SBarry Smith 3711b07ff414SBarry Smith /*@ 3712bb7acecfSBarry Smith DMSetApplicationContext - Set a user context into a `DM` object 371347c6ae99SBarry Smith 371447c6ae99SBarry Smith Not Collective 371547c6ae99SBarry Smith 371647c6ae99SBarry Smith Input Parameters: 3717bb7acecfSBarry Smith + dm - the `DM` object 371847c6ae99SBarry Smith - ctx - the user context 371947c6ae99SBarry Smith 372047c6ae99SBarry Smith Level: intermediate 372147c6ae99SBarry Smith 3722bb7acecfSBarry Smith Note: 372335cb6cd3SPierre Jolivet A user context is a way to pass problem specific information that is accessible whenever the `DM` is available 3724bb7acecfSBarry Smith 3725bb7acecfSBarry Smith .seealso: `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 372647c6ae99SBarry Smith @*/ 3727d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContext(DM dm, void *ctx) 3728d71ae5a4SJacob Faibussowitsch { 372947c6ae99SBarry Smith PetscFunctionBegin; 3730171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 373147c6ae99SBarry Smith dm->ctx = ctx; 373247c6ae99SBarry Smith PetscFunctionReturn(0); 373347c6ae99SBarry Smith } 373447c6ae99SBarry Smith 373547c6ae99SBarry Smith /*@ 3736bb7acecfSBarry Smith DMGetApplicationContext - Gets a user context from a `DM` object 373747c6ae99SBarry Smith 373847c6ae99SBarry Smith Not Collective 373947c6ae99SBarry Smith 374047c6ae99SBarry Smith Input Parameter: 3741bb7acecfSBarry Smith . dm - the `DM` object 374247c6ae99SBarry Smith 374347c6ae99SBarry Smith Output Parameter: 374447c6ae99SBarry Smith . ctx - the user context 374547c6ae99SBarry Smith 374647c6ae99SBarry Smith Level: intermediate 374747c6ae99SBarry Smith 3748bb7acecfSBarry Smith Note: 374935cb6cd3SPierre Jolivet A user context is a way to pass problem specific information that is accessible whenever the `DM` is available 3750bb7acecfSBarry Smith 3751bb7acecfSBarry Smith .seealso: `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 375247c6ae99SBarry Smith @*/ 3753d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetApplicationContext(DM dm, void *ctx) 3754d71ae5a4SJacob Faibussowitsch { 375547c6ae99SBarry Smith PetscFunctionBegin; 3756171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37571b2093e4SBarry Smith *(void **)ctx = dm->ctx; 375847c6ae99SBarry Smith PetscFunctionReturn(0); 375947c6ae99SBarry Smith } 376047c6ae99SBarry Smith 376108da532bSDmitry Karpeev /*@C 3762bb7acecfSBarry Smith DMSetVariableBounds - sets a function to compute the lower and upper bound vectors for `SNESVI`. 376308da532bSDmitry Karpeev 3764d083f849SBarry Smith Logically Collective on dm 376508da532bSDmitry Karpeev 3766d8d19677SJose E. Roman Input Parameters: 376708da532bSDmitry Karpeev + dm - the DM object 37680298fd71SBarry Smith - f - the function that computes variable bounds used by SNESVI (use NULL to cancel a previous function that was set) 376908da532bSDmitry Karpeev 377008da532bSDmitry Karpeev Level: intermediate 377108da532bSDmitry Karpeev 3772bb7acecfSBarry Smith .seealso: `DMComputeVariableBounds()`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`, 3773db781477SPatrick Sanan `DMSetJacobian()` 377408da532bSDmitry Karpeev @*/ 3775d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVariableBounds(DM dm, PetscErrorCode (*f)(DM, Vec, Vec)) 3776d71ae5a4SJacob Faibussowitsch { 377708da532bSDmitry Karpeev PetscFunctionBegin; 37785a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 377908da532bSDmitry Karpeev dm->ops->computevariablebounds = f; 378008da532bSDmitry Karpeev PetscFunctionReturn(0); 378108da532bSDmitry Karpeev } 378208da532bSDmitry Karpeev 378308da532bSDmitry Karpeev /*@ 3784bb7acecfSBarry Smith DMHasVariableBounds - does the `DM` object have a variable bounds function? 378508da532bSDmitry Karpeev 378608da532bSDmitry Karpeev Not Collective 378708da532bSDmitry Karpeev 378808da532bSDmitry Karpeev Input Parameter: 3789bb7acecfSBarry Smith . dm - the `DM` object to destroy 379008da532bSDmitry Karpeev 379108da532bSDmitry Karpeev Output Parameter: 3792bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the variable bounds function exists 379308da532bSDmitry Karpeev 379408da532bSDmitry Karpeev Level: developer 379508da532bSDmitry Karpeev 3796bb7acecfSBarry Smith .seealso: `DMComputeVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 379708da532bSDmitry Karpeev @*/ 3798d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasVariableBounds(DM dm, PetscBool *flg) 3799d71ae5a4SJacob Faibussowitsch { 380008da532bSDmitry Karpeev PetscFunctionBegin; 38015a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3802534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 380308da532bSDmitry Karpeev *flg = (dm->ops->computevariablebounds) ? PETSC_TRUE : PETSC_FALSE; 380408da532bSDmitry Karpeev PetscFunctionReturn(0); 380508da532bSDmitry Karpeev } 380608da532bSDmitry Karpeev 380708da532bSDmitry Karpeev /*@C 3808bb7acecfSBarry Smith DMComputeVariableBounds - compute variable bounds used by `SNESVI`. 380908da532bSDmitry Karpeev 3810d083f849SBarry Smith Logically Collective on dm 381108da532bSDmitry Karpeev 3812f899ff85SJose E. Roman Input Parameter: 3813bb7acecfSBarry Smith . dm - the `DM` object 381408da532bSDmitry Karpeev 381508da532bSDmitry Karpeev Output parameters: 381608da532bSDmitry Karpeev + xl - lower bound 381708da532bSDmitry Karpeev - xu - upper bound 381808da532bSDmitry Karpeev 3819907376e6SBarry Smith Level: advanced 3820907376e6SBarry Smith 382195452b02SPatrick Sanan Notes: 382295452b02SPatrick Sanan This is generally not called by users. It calls the function provided by the user with DMSetVariableBounds() 382308da532bSDmitry Karpeev 3824bb7acecfSBarry Smith .seealso: `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 382508da532bSDmitry Karpeev @*/ 3826d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeVariableBounds(DM dm, Vec xl, Vec xu) 3827d71ae5a4SJacob Faibussowitsch { 382808da532bSDmitry Karpeev PetscFunctionBegin; 38295a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 383008da532bSDmitry Karpeev PetscValidHeaderSpecific(xl, VEC_CLASSID, 2); 38315a84ad33SLisandro Dalcin PetscValidHeaderSpecific(xu, VEC_CLASSID, 3); 3832dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, computevariablebounds, xl, xu); 383308da532bSDmitry Karpeev PetscFunctionReturn(0); 383408da532bSDmitry Karpeev } 383508da532bSDmitry Karpeev 3836b0ae01b7SPeter Brune /*@ 3837bb7acecfSBarry Smith DMHasColoring - does the `DM` object have a method of providing a coloring? 3838b0ae01b7SPeter Brune 3839b0ae01b7SPeter Brune Not Collective 3840b0ae01b7SPeter Brune 3841b0ae01b7SPeter Brune Input Parameter: 3842b0ae01b7SPeter Brune . dm - the DM object 3843b0ae01b7SPeter Brune 3844b0ae01b7SPeter Brune Output Parameter: 3845bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateColoring()`. 3846b0ae01b7SPeter Brune 3847b0ae01b7SPeter Brune Level: developer 3848b0ae01b7SPeter Brune 3849bb7acecfSBarry Smith .seealso: `DMCreateColoring()` 3850b0ae01b7SPeter Brune @*/ 3851d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasColoring(DM dm, PetscBool *flg) 3852d71ae5a4SJacob Faibussowitsch { 3853b0ae01b7SPeter Brune PetscFunctionBegin; 38545a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3855534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 3856b0ae01b7SPeter Brune *flg = (dm->ops->getcoloring) ? PETSC_TRUE : PETSC_FALSE; 3857b0ae01b7SPeter Brune PetscFunctionReturn(0); 3858b0ae01b7SPeter Brune } 3859b0ae01b7SPeter Brune 38603ad4599aSBarry Smith /*@ 3861bb7acecfSBarry Smith DMHasCreateRestriction - does the `DM` object have a method of providing a restriction? 38623ad4599aSBarry Smith 38633ad4599aSBarry Smith Not Collective 38643ad4599aSBarry Smith 38653ad4599aSBarry Smith Input Parameter: 3866bb7acecfSBarry Smith . dm - the `DM` object 38673ad4599aSBarry Smith 38683ad4599aSBarry Smith Output Parameter: 3869bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateRestriction()`. 38703ad4599aSBarry Smith 38713ad4599aSBarry Smith Level: developer 38723ad4599aSBarry Smith 3873bb7acecfSBarry Smith .seealso: `DMCreateRestriction()`, `DMHasCreateInterpolation()`, `DMHasCreateInjection()` 38743ad4599aSBarry Smith @*/ 3875d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateRestriction(DM dm, PetscBool *flg) 3876d71ae5a4SJacob Faibussowitsch { 38773ad4599aSBarry Smith PetscFunctionBegin; 38785a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3879534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 38803ad4599aSBarry Smith *flg = (dm->ops->createrestriction) ? PETSC_TRUE : PETSC_FALSE; 38813ad4599aSBarry Smith PetscFunctionReturn(0); 38823ad4599aSBarry Smith } 38833ad4599aSBarry Smith 3884a7058e45SLawrence Mitchell /*@ 3885bb7acecfSBarry Smith DMHasCreateInjection - does the `DM` object have a method of providing an injection? 3886a7058e45SLawrence Mitchell 3887a7058e45SLawrence Mitchell Not Collective 3888a7058e45SLawrence Mitchell 3889a7058e45SLawrence Mitchell Input Parameter: 3890bb7acecfSBarry Smith . dm - the `DM` object 3891a7058e45SLawrence Mitchell 3892a7058e45SLawrence Mitchell Output Parameter: 3893bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateInjection()`. 3894a7058e45SLawrence Mitchell 3895a7058e45SLawrence Mitchell Level: developer 3896a7058e45SLawrence Mitchell 3897bb7acecfSBarry Smith .seealso: `DMCreateInjection()`, `DMHasCreateRestriction()`, `DMHasCreateInterpolation()` 3898a7058e45SLawrence Mitchell @*/ 3899d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateInjection(DM dm, PetscBool *flg) 3900d71ae5a4SJacob Faibussowitsch { 3901a7058e45SLawrence Mitchell PetscFunctionBegin; 39025a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3903534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 3904dbbe0bcdSBarry Smith if (dm->ops->hascreateinjection) PetscUseTypeMethod(dm, hascreateinjection, flg); 3905ad540459SPierre Jolivet else *flg = (dm->ops->createinjection) ? PETSC_TRUE : PETSC_FALSE; 3906a7058e45SLawrence Mitchell PetscFunctionReturn(0); 3907a7058e45SLawrence Mitchell } 3908a7058e45SLawrence Mitchell 39090298fd71SBarry Smith PetscFunctionList DMList = NULL; 3910264ace61SBarry Smith PetscBool DMRegisterAllCalled = PETSC_FALSE; 3911264ace61SBarry Smith 3912264ace61SBarry Smith /*@C 3913bb7acecfSBarry Smith DMSetType - Builds a `DM`, for a particular `DM` implementation. 3914264ace61SBarry Smith 3915d083f849SBarry Smith Collective on dm 3916264ace61SBarry Smith 3917264ace61SBarry Smith Input Parameters: 3918bb7acecfSBarry Smith + dm - The `DM` object 3919bb7acecfSBarry Smith - method - The name of the `DMType`, for example `DMDA`, `DMPLEX` 3920264ace61SBarry Smith 3921264ace61SBarry Smith Options Database Key: 3922bb7acecfSBarry Smith . -dm_type <type> - Sets the `DM` type; use -help for a list of available types 3923264ace61SBarry Smith 3924264ace61SBarry Smith Level: intermediate 3925264ace61SBarry Smith 3926bb7acecfSBarry Smith Note: 3927bb7acecfSBarry Smith Of the `DM` is constructed by directly calling a function to construct a particular `DM`, for example, `DMDACreate2d()` or `DMPLEXCreateBoxMesh()` 3928bb7acecfSBarry Smith 3929bb7acecfSBarry Smith .seealso: `DMType`, `DMDA`, `DMPLEX`, `DMGetType()`, `DMCreate()`, `DMDACreate2d()` 3930264ace61SBarry Smith @*/ 3931d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetType(DM dm, DMType method) 3932d71ae5a4SJacob Faibussowitsch { 3933264ace61SBarry Smith PetscErrorCode (*r)(DM); 3934264ace61SBarry Smith PetscBool match; 3935264ace61SBarry Smith 3936264ace61SBarry Smith PetscFunctionBegin; 3937264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39389566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, method, &match)); 3939264ace61SBarry Smith if (match) PetscFunctionReturn(0); 3940264ace61SBarry Smith 39419566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 39429566063dSJacob Faibussowitsch PetscCall(PetscFunctionListFind(DMList, method, &r)); 39437a8be351SBarry Smith PetscCheck(r, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown DM type: %s", method); 3944264ace61SBarry Smith 3945dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, destroy); 39469566063dSJacob Faibussowitsch PetscCall(PetscMemzero(dm->ops, sizeof(*dm->ops))); 39479566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)dm, method)); 39489566063dSJacob Faibussowitsch PetscCall((*r)(dm)); 3949264ace61SBarry Smith PetscFunctionReturn(0); 3950264ace61SBarry Smith } 3951264ace61SBarry Smith 3952264ace61SBarry Smith /*@C 3953bb7acecfSBarry Smith DMGetType - Gets the `DM` type name (as a string) from the `DM`. 3954264ace61SBarry Smith 3955264ace61SBarry Smith Not Collective 3956264ace61SBarry Smith 3957264ace61SBarry Smith Input Parameter: 3958bb7acecfSBarry Smith . dm - The `DM` 3959264ace61SBarry Smith 3960264ace61SBarry Smith Output Parameter: 3961bb7acecfSBarry Smith . type - The `DMType` name 3962264ace61SBarry Smith 3963264ace61SBarry Smith Level: intermediate 3964264ace61SBarry Smith 3965bb7acecfSBarry Smith .seealso: `DMType`, `DMDA`, `DMPLEX`, `DMSetType()`, `DMCreate()` 3966264ace61SBarry Smith @*/ 3967d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetType(DM dm, DMType *type) 3968d71ae5a4SJacob Faibussowitsch { 3969264ace61SBarry Smith PetscFunctionBegin; 3970264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3971c959eef4SJed Brown PetscValidPointer(type, 2); 39729566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 3973264ace61SBarry Smith *type = ((PetscObject)dm)->type_name; 3974264ace61SBarry Smith PetscFunctionReturn(0); 3975264ace61SBarry Smith } 3976264ace61SBarry Smith 397767a56275SMatthew G Knepley /*@C 3978bb7acecfSBarry Smith DMConvert - Converts a `DM` to another `DM`, either of the same or different type. 397967a56275SMatthew G Knepley 3980d083f849SBarry Smith Collective on dm 398167a56275SMatthew G Knepley 398267a56275SMatthew G Knepley Input Parameters: 3983bb7acecfSBarry Smith + dm - the `DM` 3984bb7acecfSBarry Smith - newtype - new `DM` type (use "same" for the same type) 398567a56275SMatthew G Knepley 398667a56275SMatthew G Knepley Output Parameter: 3987bb7acecfSBarry Smith . M - pointer to new `DM` 398867a56275SMatthew G Knepley 398967a56275SMatthew G Knepley Notes: 3990bb7acecfSBarry Smith Cannot be used to convert a sequential `DM` to a parallel or a parallel to sequential, 3991bb7acecfSBarry Smith the MPI communicator of the generated `DM` is always the same as the communicator 3992bb7acecfSBarry Smith of the input `DM`. 399367a56275SMatthew G Knepley 399467a56275SMatthew G Knepley Level: intermediate 399567a56275SMatthew G Knepley 3996bb7acecfSBarry Smith .seealso: `DM`, `DMSetType()`, `DMCreate()`, `DMClone()` 399767a56275SMatthew G Knepley @*/ 3998d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConvert(DM dm, DMType newtype, DM *M) 3999d71ae5a4SJacob Faibussowitsch { 400067a56275SMatthew G Knepley DM B; 400167a56275SMatthew G Knepley char convname[256]; 4002c067b6caSMatthew G. Knepley PetscBool sametype /*, issame */; 400367a56275SMatthew G Knepley 400467a56275SMatthew G Knepley PetscFunctionBegin; 400567a56275SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 400667a56275SMatthew G Knepley PetscValidType(dm, 1); 400767a56275SMatthew G Knepley PetscValidPointer(M, 3); 40089566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, newtype, &sametype)); 40099566063dSJacob Faibussowitsch /* PetscCall(PetscStrcmp(newtype, "same", &issame)); */ 4010c067b6caSMatthew G. Knepley if (sametype) { 4011c067b6caSMatthew G. Knepley *M = dm; 40129566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 4013c067b6caSMatthew G. Knepley PetscFunctionReturn(0); 4014c067b6caSMatthew G. Knepley } else { 40150298fd71SBarry Smith PetscErrorCode (*conv)(DM, DMType, DM *) = NULL; 401667a56275SMatthew G Knepley 401767a56275SMatthew G Knepley /* 401867a56275SMatthew G Knepley Order of precedence: 401967a56275SMatthew G Knepley 1) See if a specialized converter is known to the current DM. 402067a56275SMatthew G Knepley 2) See if a specialized converter is known to the desired DM class. 402167a56275SMatthew G Knepley 3) See if a good general converter is registered for the desired class 402267a56275SMatthew G Knepley 4) See if a good general converter is known for the current matrix. 402367a56275SMatthew G Knepley 5) Use a really basic converter. 402467a56275SMatthew G Knepley */ 402567a56275SMatthew G Knepley 402667a56275SMatthew G Knepley /* 1) See if a specialized converter is known to the current DM and the desired class */ 40279566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 40289566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 40299566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 40309566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 40319566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 40329566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)dm, convname, &conv)); 403367a56275SMatthew G Knepley if (conv) goto foundconv; 403467a56275SMatthew G Knepley 403567a56275SMatthew G Knepley /* 2) See if a specialized converter is known to the desired DM class. */ 40369566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &B)); 40379566063dSJacob Faibussowitsch PetscCall(DMSetType(B, newtype)); 40389566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 40399566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 40409566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 40419566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 40429566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 40439566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)B, convname, &conv)); 404467a56275SMatthew G Knepley if (conv) { 40459566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 404667a56275SMatthew G Knepley goto foundconv; 404767a56275SMatthew G Knepley } 404867a56275SMatthew G Knepley 404967a56275SMatthew G Knepley #if 0 405067a56275SMatthew G Knepley /* 3) See if a good general converter is registered for the desired class */ 405167a56275SMatthew G Knepley conv = B->ops->convertfrom; 40529566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 405367a56275SMatthew G Knepley if (conv) goto foundconv; 405467a56275SMatthew G Knepley 405567a56275SMatthew G Knepley /* 4) See if a good general converter is known for the current matrix */ 405667a56275SMatthew G Knepley if (dm->ops->convert) { 405767a56275SMatthew G Knepley conv = dm->ops->convert; 405867a56275SMatthew G Knepley } 405967a56275SMatthew G Knepley if (conv) goto foundconv; 406067a56275SMatthew G Knepley #endif 406167a56275SMatthew G Knepley 406267a56275SMatthew G Knepley /* 5) Use a really basic converter. */ 406398921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No conversion possible between DM types %s and %s", ((PetscObject)dm)->type_name, newtype); 406467a56275SMatthew G Knepley 406567a56275SMatthew G Knepley foundconv: 40669566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Convert, dm, 0, 0, 0)); 40679566063dSJacob Faibussowitsch PetscCall((*conv)(dm, newtype, M)); 406812fa691eSMatthew G. Knepley /* Things that are independent of DM type: We should consult DMClone() here */ 406990b157c4SStefano Zampini { 40704fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 40716858538eSMatthew G. Knepley 40724fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 40734fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*M, maxCell, Lstart, L)); 4074c8a6034eSMark (*M)->prealloc_only = dm->prealloc_only; 40759566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->vectype)); 40769566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*M)->vectype)); 40779566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->mattype)); 40789566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*M)->mattype)); 407912fa691eSMatthew G. Knepley } 40809566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Convert, dm, 0, 0, 0)); 408167a56275SMatthew G Knepley } 40829566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)*M)); 408367a56275SMatthew G Knepley PetscFunctionReturn(0); 408467a56275SMatthew G Knepley } 4085264ace61SBarry Smith 4086264ace61SBarry Smith /*--------------------------------------------------------------------------------------------------------------------*/ 4087264ace61SBarry Smith 4088264ace61SBarry Smith /*@C 4089bb7acecfSBarry Smith DMRegister - Adds a new `DM` type implementation 40901c84c290SBarry Smith 40911c84c290SBarry Smith Not Collective 40921c84c290SBarry Smith 40931c84c290SBarry Smith Input Parameters: 40941c84c290SBarry Smith + name - The name of a new user-defined creation routine 40951c84c290SBarry Smith - create_func - The creation routine itself 40961c84c290SBarry Smith 40971c84c290SBarry Smith Notes: 4098bb7acecfSBarry Smith DMRegister() may be called multiple times to add several user-defined `DM`s 40991c84c290SBarry Smith 41001c84c290SBarry Smith Sample usage: 41011c84c290SBarry Smith .vb 4102bdf89e91SBarry Smith DMRegister("my_da", MyDMCreate); 41031c84c290SBarry Smith .ve 41041c84c290SBarry Smith 41051c84c290SBarry Smith Then, your DM type can be chosen with the procedural interface via 41061c84c290SBarry Smith .vb 41071c84c290SBarry Smith DMCreate(MPI_Comm, DM *); 41081c84c290SBarry Smith DMSetType(DM,"my_da"); 41091c84c290SBarry Smith .ve 41101c84c290SBarry Smith or at runtime via the option 41111c84c290SBarry Smith .vb 41121c84c290SBarry Smith -da_type my_da 41131c84c290SBarry Smith .ve 4114264ace61SBarry Smith 4115264ace61SBarry Smith Level: advanced 41161c84c290SBarry Smith 4117bb7acecfSBarry Smith .seealso: `DM`, `DMType`, `DMSetType()`, `DMRegisterAll()`, `DMRegisterDestroy()` 4118264ace61SBarry Smith @*/ 4119d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRegister(const char sname[], PetscErrorCode (*function)(DM)) 4120d71ae5a4SJacob Faibussowitsch { 4121264ace61SBarry Smith PetscFunctionBegin; 41229566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 41239566063dSJacob Faibussowitsch PetscCall(PetscFunctionListAdd(&DMList, sname, function)); 4124264ace61SBarry Smith PetscFunctionReturn(0); 4125264ace61SBarry Smith } 4126264ace61SBarry Smith 4127b859378eSBarry Smith /*@C 4128bb7acecfSBarry Smith DMLoad - Loads a DM that has been stored in binary with `DMView()`. 4129b859378eSBarry Smith 4130d083f849SBarry Smith Collective on viewer 4131b859378eSBarry Smith 4132b859378eSBarry Smith Input Parameters: 4133bb7acecfSBarry Smith + newdm - the newly loaded `DM`, this needs to have been created with `DMCreate()` or 4134bb7acecfSBarry Smith some related function before a call to `DMLoad()`. 4135bb7acecfSBarry Smith - viewer - binary file viewer, obtained from `PetscViewerBinaryOpen()` or 4136bb7acecfSBarry Smith `PETSCVIEWERHDF5` file viewer, obtained from `PetscViewerHDF5Open()` 4137b859378eSBarry Smith 4138b859378eSBarry Smith Level: intermediate 4139b859378eSBarry Smith 4140b859378eSBarry Smith Notes: 414155849f57SBarry Smith The type is determined by the data in the file, any type set into the DM before this call is ignored. 4142b859378eSBarry Smith 4143bb7acecfSBarry Smith Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` format, one can save multiple `DMPLEX` 4144bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 4145bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 4146cd7e8a5eSksagiyam 4147b859378eSBarry Smith Notes for advanced users: 4148b859378eSBarry Smith Most users should not need to know the details of the binary storage 4149bb7acecfSBarry Smith format, since `DMLoad()` and `DMView()` completely hide these details. 4150b859378eSBarry Smith But for anyone who's interested, the standard binary matrix storage 4151b859378eSBarry Smith format is 4152b859378eSBarry Smith .vb 4153b859378eSBarry Smith has not yet been determined 4154b859378eSBarry Smith .ve 4155b859378eSBarry Smith 4156db781477SPatrick Sanan .seealso: `PetscViewerBinaryOpen()`, `DMView()`, `MatLoad()`, `VecLoad()` 4157b859378eSBarry Smith @*/ 4158d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLoad(DM newdm, PetscViewer viewer) 4159d71ae5a4SJacob Faibussowitsch { 41609331c7a4SMatthew G. Knepley PetscBool isbinary, ishdf5; 4161b859378eSBarry Smith 4162b859378eSBarry Smith PetscFunctionBegin; 4163b859378eSBarry Smith PetscValidHeaderSpecific(newdm, DM_CLASSID, 1); 4164b859378eSBarry Smith PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 41659566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckReadable(viewer)); 41669566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 41679566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 41689566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Load, viewer, 0, 0, 0)); 41699331c7a4SMatthew G. Knepley if (isbinary) { 41709331c7a4SMatthew G. Knepley PetscInt classid; 41719331c7a4SMatthew G. Knepley char type[256]; 4172b859378eSBarry Smith 41739566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &classid, 1, NULL, PETSC_INT)); 41747a8be351SBarry Smith PetscCheck(classid == DM_FILE_CLASSID, PetscObjectComm((PetscObject)newdm), PETSC_ERR_ARG_WRONG, "Not DM next in file, classid found %d", (int)classid); 41759566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, type, 256, NULL, PETSC_CHAR)); 41769566063dSJacob Faibussowitsch PetscCall(DMSetType(newdm, type)); 4177dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 41789331c7a4SMatthew G. Knepley } else if (ishdf5) { 4179dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 41809331c7a4SMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerBinaryOpen() or PetscViewerHDF5Open()"); 41819566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Load, viewer, 0, 0, 0)); 4182b859378eSBarry Smith PetscFunctionReturn(0); 4183b859378eSBarry Smith } 4184b859378eSBarry Smith 41857da65231SMatthew G Knepley /******************************** FEM Support **********************************/ 41867da65231SMatthew G Knepley 4187d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellVector(PetscInt c, const char name[], PetscInt len, const PetscScalar x[]) 4188d71ae5a4SJacob Faibussowitsch { 41891d47ebbbSSatish Balay PetscInt f; 41901b30c384SMatthew G Knepley 41917da65231SMatthew G Knepley PetscFunctionBegin; 419263a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 419348a46eb9SPierre Jolivet for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %g |\n", (double)PetscRealPart(x[f]))); 41947da65231SMatthew G Knepley PetscFunctionReturn(0); 41957da65231SMatthew G Knepley } 41967da65231SMatthew G Knepley 4197d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellMatrix(PetscInt c, const char name[], PetscInt rows, PetscInt cols, const PetscScalar A[]) 4198d71ae5a4SJacob Faibussowitsch { 41991b30c384SMatthew G Knepley PetscInt f, g; 42007da65231SMatthew G Knepley 42017da65231SMatthew G Knepley PetscFunctionBegin; 420263a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 42031d47ebbbSSatish Balay for (f = 0; f < rows; ++f) { 42049566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |")); 420548a46eb9SPierre Jolivet for (g = 0; g < cols; ++g) PetscCall(PetscPrintf(PETSC_COMM_SELF, " % 9.5g", (double)PetscRealPart(A[f * cols + g]))); 42069566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |\n")); 42077da65231SMatthew G Knepley } 42087da65231SMatthew G Knepley PetscFunctionReturn(0); 42097da65231SMatthew G Knepley } 4210e7c4fc90SDmitry Karpeev 4211d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintLocalVec(DM dm, const char name[], PetscReal tol, Vec X) 4212d71ae5a4SJacob Faibussowitsch { 42130c5b8624SToby Isaac PetscInt localSize, bs; 42140c5b8624SToby Isaac PetscMPIInt size; 42150c5b8624SToby Isaac Vec x, xglob; 42160c5b8624SToby Isaac const PetscScalar *xarray; 4217e759306cSMatthew G. Knepley 4218e759306cSMatthew G. Knepley PetscFunctionBegin; 42199566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 42209566063dSJacob Faibussowitsch PetscCall(VecDuplicate(X, &x)); 42219566063dSJacob Faibussowitsch PetscCall(VecCopy(X, x)); 42229566063dSJacob Faibussowitsch PetscCall(VecChop(x, tol)); 42239566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "%s:\n", name)); 42240c5b8624SToby Isaac if (size > 1) { 42259566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(x, &localSize)); 42269566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xarray)); 42279566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize(x, &bs)); 42289566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)dm), bs, localSize, PETSC_DETERMINE, xarray, &xglob)); 42290c5b8624SToby Isaac } else { 42300c5b8624SToby Isaac xglob = x; 42310c5b8624SToby Isaac } 42329566063dSJacob Faibussowitsch PetscCall(VecView(xglob, PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)dm)))); 42330c5b8624SToby Isaac if (size > 1) { 42349566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xglob)); 42359566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xarray)); 42360c5b8624SToby Isaac } 42379566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 4238e759306cSMatthew G. Knepley PetscFunctionReturn(0); 4239e759306cSMatthew G. Knepley } 4240e759306cSMatthew G. Knepley 424188ed4aceSMatthew G Knepley /*@ 4242bb7acecfSBarry Smith DMGetSection - Get the `PetscSection` encoding the local data layout for the `DM`. This is equivalent to `DMGetLocalSection()`. Deprecated in v3.12 4243061576a5SJed Brown 4244061576a5SJed Brown Input Parameter: 4245bb7acecfSBarry Smith . dm - The `DM` 4246061576a5SJed Brown 4247061576a5SJed Brown Output Parameter: 4248bb7acecfSBarry Smith . section - The `PetscSection` 4249061576a5SJed Brown 4250061576a5SJed Brown Options Database Keys: 4251bb7acecfSBarry Smith . -dm_petscsection_view - View the `PetscSection` created by the `DM` 4252061576a5SJed Brown 4253061576a5SJed Brown Level: advanced 4254061576a5SJed Brown 4255061576a5SJed Brown Notes: 4256bb7acecfSBarry Smith Use `DMGetLocalSection()` in new code. 4257061576a5SJed Brown 4258bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 4259061576a5SJed Brown 4260db781477SPatrick Sanan .seealso: `DMGetLocalSection()`, `DMSetLocalSection()`, `DMGetGlobalSection()` 4261061576a5SJed Brown @*/ 4262d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSection(DM dm, PetscSection *section) 4263d71ae5a4SJacob Faibussowitsch { 4264061576a5SJed Brown PetscFunctionBegin; 42659566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, section)); 4266061576a5SJed Brown PetscFunctionReturn(0); 4267061576a5SJed Brown } 4268061576a5SJed Brown 4269061576a5SJed Brown /*@ 4270bb7acecfSBarry Smith DMGetLocalSection - Get the `PetscSection` encoding the local data layout for the `DM`. 427188ed4aceSMatthew G Knepley 427288ed4aceSMatthew G Knepley Input Parameter: 4273bb7acecfSBarry Smith . dm - The `DM` 427488ed4aceSMatthew G Knepley 427588ed4aceSMatthew G Knepley Output Parameter: 4276bb7acecfSBarry Smith . section - The `PetscSection` 427788ed4aceSMatthew G Knepley 4278e5893cccSMatthew G. Knepley Options Database Keys: 4279bb7acecfSBarry Smith . -dm_petscsection_view - View the section created by the `DM` 4280e5893cccSMatthew G. Knepley 428188ed4aceSMatthew G Knepley Level: intermediate 428288ed4aceSMatthew G Knepley 4283bb7acecfSBarry Smith Note: 4284bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 428588ed4aceSMatthew G Knepley 4286db781477SPatrick Sanan .seealso: `DMSetLocalSection()`, `DMGetGlobalSection()` 428788ed4aceSMatthew G Knepley @*/ 4288d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalSection(DM dm, PetscSection *section) 4289d71ae5a4SJacob Faibussowitsch { 429088ed4aceSMatthew G Knepley PetscFunctionBegin; 429188ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 429288ed4aceSMatthew G Knepley PetscValidPointer(section, 2); 42931bb6d2a8SBarry Smith if (!dm->localSection && dm->ops->createlocalsection) { 4294e5e52638SMatthew G. Knepley PetscInt d; 4295e5e52638SMatthew G. Knepley 429645480ffeSMatthew G. Knepley if (dm->setfromoptionscalled) { 429745480ffeSMatthew G. Knepley PetscObject obj = (PetscObject)dm; 429845480ffeSMatthew G. Knepley PetscViewer viewer; 429945480ffeSMatthew G. Knepley PetscViewerFormat format; 430045480ffeSMatthew G. Knepley PetscBool flg; 430145480ffeSMatthew G. Knepley 43029566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetViewer(PetscObjectComm(obj), obj->options, obj->prefix, "-dm_petscds_view", &viewer, &format, &flg)); 43039566063dSJacob Faibussowitsch if (flg) PetscCall(PetscViewerPushFormat(viewer, format)); 430445480ffeSMatthew G. Knepley for (d = 0; d < dm->Nds; ++d) { 43059566063dSJacob Faibussowitsch PetscCall(PetscDSSetFromOptions(dm->probs[d].ds)); 43069566063dSJacob Faibussowitsch if (flg) PetscCall(PetscDSView(dm->probs[d].ds, viewer)); 430745480ffeSMatthew G. Knepley } 430845480ffeSMatthew G. Knepley if (flg) { 43099566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 43109566063dSJacob Faibussowitsch PetscCall(PetscViewerPopFormat(viewer)); 43119566063dSJacob Faibussowitsch PetscCall(PetscViewerDestroy(&viewer)); 431245480ffeSMatthew G. Knepley } 431345480ffeSMatthew G. Knepley } 4314dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalsection); 43159566063dSJacob Faibussowitsch if (dm->localSection) PetscCall(PetscObjectViewFromOptions((PetscObject)dm->localSection, NULL, "-dm_petscsection_view")); 43162f0f8703SMatthew G. Knepley } 43171bb6d2a8SBarry Smith *section = dm->localSection; 431888ed4aceSMatthew G Knepley PetscFunctionReturn(0); 431988ed4aceSMatthew G Knepley } 432088ed4aceSMatthew G Knepley 432188ed4aceSMatthew G Knepley /*@ 4322bb7acecfSBarry Smith DMSetSection - Set the `PetscSection` encoding the local data layout for the `DM`. This is equivalent to `DMSetLocalSection()`. Deprecated in v3.12 4323061576a5SJed Brown 4324061576a5SJed Brown Input Parameters: 4325bb7acecfSBarry Smith + dm - The `DM` 4326bb7acecfSBarry Smith - section - The `PetscSection` 4327061576a5SJed Brown 4328061576a5SJed Brown Level: advanced 4329061576a5SJed Brown 4330061576a5SJed Brown Notes: 4331bb7acecfSBarry Smith Use `DMSetLocalSection()` in new code. 4332061576a5SJed Brown 4333bb7acecfSBarry Smith Any existing `PetscSection` will be destroyed 4334061576a5SJed Brown 4335db781477SPatrick Sanan .seealso: `DMSetLocalSection()`, `DMGetLocalSection()`, `DMSetGlobalSection()` 4336061576a5SJed Brown @*/ 4337d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSection(DM dm, PetscSection section) 4338d71ae5a4SJacob Faibussowitsch { 4339061576a5SJed Brown PetscFunctionBegin; 43409566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm, section)); 4341061576a5SJed Brown PetscFunctionReturn(0); 4342061576a5SJed Brown } 4343061576a5SJed Brown 4344061576a5SJed Brown /*@ 4345bb7acecfSBarry Smith DMSetLocalSection - Set the `PetscSection` encoding the local data layout for the `DM`. 434688ed4aceSMatthew G Knepley 434788ed4aceSMatthew G Knepley Input Parameters: 4348bb7acecfSBarry Smith + dm - The `DM` 4349bb7acecfSBarry Smith - section - The `PetscSection` 435088ed4aceSMatthew G Knepley 435188ed4aceSMatthew G Knepley Level: intermediate 435288ed4aceSMatthew G Knepley 4353bb7acecfSBarry Smith Note: 4354bb7acecfSBarry Smith Any existing Section will be destroyed 435588ed4aceSMatthew G Knepley 4356bb7acecfSBarry Smith .seealso: `PetscSection`, `DMGetLocalSection()`, `DMSetGlobalSection()` 435788ed4aceSMatthew G Knepley @*/ 4358d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLocalSection(DM dm, PetscSection section) 4359d71ae5a4SJacob Faibussowitsch { 4360c473ab19SMatthew G. Knepley PetscInt numFields = 0; 4361af122d2aSMatthew G Knepley PetscInt f; 436288ed4aceSMatthew G Knepley 436388ed4aceSMatthew G Knepley PetscFunctionBegin; 436488ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4365b9d85ea2SLisandro Dalcin if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 43669566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 43679566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->localSection)); 43681bb6d2a8SBarry Smith dm->localSection = section; 43699566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(dm->localSection, &numFields)); 4370af122d2aSMatthew G Knepley if (numFields) { 43719566063dSJacob Faibussowitsch PetscCall(DMSetNumFields(dm, numFields)); 4372af122d2aSMatthew G Knepley for (f = 0; f < numFields; ++f) { 43730f21e855SMatthew G. Knepley PetscObject disc; 4374af122d2aSMatthew G Knepley const char *name; 4375af122d2aSMatthew G Knepley 43769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(dm->localSection, f, &name)); 43779566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &disc)); 43789566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName(disc, name)); 4379af122d2aSMatthew G Knepley } 4380af122d2aSMatthew G Knepley } 4381e87a4003SBarry Smith /* The global section will be rebuilt in the next call to DMGetGlobalSection(). */ 43829566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 438388ed4aceSMatthew G Knepley PetscFunctionReturn(0); 438488ed4aceSMatthew G Knepley } 438588ed4aceSMatthew G Knepley 43869435951eSToby Isaac /*@ 4387bb7acecfSBarry Smith DMGetDefaultConstraints - Get the `PetscSection` and `Mat` that specify the local constraint interpolation. See `DMSetDefaultConstraints()` for a description of the purpose of constraint interpolation. 43889435951eSToby Isaac 4389e228b242SToby Isaac not collective 4390e228b242SToby Isaac 43919435951eSToby Isaac Input Parameter: 4392bb7acecfSBarry Smith . dm - The `DM` 43939435951eSToby Isaac 4394d8d19677SJose E. Roman Output Parameters: 4395bb7acecfSBarry Smith + section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Returns NULL if there are no local constraints. 4396bb7acecfSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section. Returns NULL if there are no local constraints. 439779769bd5SJed Brown - bias - Vector containing bias to be added to constrained dofs 43989435951eSToby Isaac 43999435951eSToby Isaac Level: advanced 44009435951eSToby Isaac 4401bb7acecfSBarry Smith Note: 4402bb7acecfSBarry Smith This gets borrowed references, so the user should not destroy the `PetscSection`, `Mat`, or `Vec`. 44039435951eSToby Isaac 4404db781477SPatrick Sanan .seealso: `DMSetDefaultConstraints()` 44059435951eSToby Isaac @*/ 4406d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDefaultConstraints(DM dm, PetscSection *section, Mat *mat, Vec *bias) 4407d71ae5a4SJacob Faibussowitsch { 44089435951eSToby Isaac PetscFunctionBegin; 44099435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4410dbbe0bcdSBarry Smith if (!dm->defaultConstraint.section && !dm->defaultConstraint.mat && dm->ops->createdefaultconstraints) PetscUseTypeMethod(dm, createdefaultconstraints); 44113b8ba7d1SJed Brown if (section) *section = dm->defaultConstraint.section; 44123b8ba7d1SJed Brown if (mat) *mat = dm->defaultConstraint.mat; 441379769bd5SJed Brown if (bias) *bias = dm->defaultConstraint.bias; 44149435951eSToby Isaac PetscFunctionReturn(0); 44159435951eSToby Isaac } 44169435951eSToby Isaac 44179435951eSToby Isaac /*@ 4418bb7acecfSBarry Smith DMSetDefaultConstraints - Set the `PetscSection` and `Mat` that specify the local constraint interpolation. 44199435951eSToby Isaac 4420bb7acecfSBarry Smith If a constraint matrix is specified, then it is applied during `DMGlobalToLocalEnd()` when mode is `INSERT_VALUES`, `INSERT_BC_VALUES`, or `INSERT_ALL_VALUES`. Without a constraint matrix, the local vector l returned by `DMGlobalToLocalEnd()` contains values that have been scattered from a global vector without modification; with a constraint matrix A, l is modified by computing c = A * l + bias, l[s[i]] = c[i], where the scatter s is defined by the `PetscSection` returned by `DMGetDefaultConstraints()`. 44219435951eSToby Isaac 4422bb7acecfSBarry Smith If a constraint matrix is specified, then its adjoint is applied during `DMLocalToGlobalBegin()` when mode is `ADD_VALUES`, `ADD_BC_VALUES`, or `ADD_ALL_VALUES`. Without a constraint matrix, the local vector l is accumulated into a global vector without modification; with a constraint matrix A, l is first modified by computing c[i] = l[s[i]], l[s[i]] = 0, l = l + A'*c, which is the adjoint of the operation described above. Any bias, if specified, is ignored when accumulating. 44239435951eSToby Isaac 4424e228b242SToby Isaac collective on dm 4425e228b242SToby Isaac 44269435951eSToby Isaac Input Parameters: 4427bb7acecfSBarry Smith + dm - The `DM` 4428bb7acecfSBarry Smith . section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 4429bb7acecfSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section: NULL indicates no constraints. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 4430bb7acecfSBarry Smith - bias - A bias vector to be added to constrained values in the local vector. NULL indicates no bias. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 44319435951eSToby Isaac 44329435951eSToby Isaac Level: advanced 44339435951eSToby Isaac 4434bb7acecfSBarry Smith Note: 4435bb7acecfSBarry Smith This increments the references of the `PetscSection`, `Mat`, and `Vec`, so they user can destroy them. 44369435951eSToby Isaac 4437db781477SPatrick Sanan .seealso: `DMGetDefaultConstraints()` 44389435951eSToby Isaac @*/ 4439d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDefaultConstraints(DM dm, PetscSection section, Mat mat, Vec bias) 4440d71ae5a4SJacob Faibussowitsch { 4441e228b242SToby Isaac PetscMPIInt result; 44429435951eSToby Isaac 44439435951eSToby Isaac PetscFunctionBegin; 44449435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4445e228b242SToby Isaac if (section) { 4446e228b242SToby Isaac PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 44479566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)section), &result)); 44487a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint section must have local communicator"); 4449e228b242SToby Isaac } 4450e228b242SToby Isaac if (mat) { 4451e228b242SToby Isaac PetscValidHeaderSpecific(mat, MAT_CLASSID, 3); 44529566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)mat), &result)); 44537a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint matrix must have local communicator"); 4454e228b242SToby Isaac } 445579769bd5SJed Brown if (bias) { 445679769bd5SJed Brown PetscValidHeaderSpecific(bias, VEC_CLASSID, 4); 44579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)bias), &result)); 445879769bd5SJed Brown PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint bias must have local communicator"); 445979769bd5SJed Brown } 44609566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 44619566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->defaultConstraint.section)); 44623b8ba7d1SJed Brown dm->defaultConstraint.section = section; 44639566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mat)); 44649566063dSJacob Faibussowitsch PetscCall(MatDestroy(&dm->defaultConstraint.mat)); 44653b8ba7d1SJed Brown dm->defaultConstraint.mat = mat; 44669566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)bias)); 44679566063dSJacob Faibussowitsch PetscCall(VecDestroy(&dm->defaultConstraint.bias)); 446879769bd5SJed Brown dm->defaultConstraint.bias = bias; 44699435951eSToby Isaac PetscFunctionReturn(0); 44709435951eSToby Isaac } 44719435951eSToby Isaac 4472497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 4473507e4973SMatthew G. Knepley /* 4474bb7acecfSBarry Smith DMDefaultSectionCheckConsistency - Check the consistentcy of the global and local sections. Generates and error if they are not consistent. 4475507e4973SMatthew G. Knepley 4476507e4973SMatthew G. Knepley Input Parameters: 4477bb7acecfSBarry Smith + dm - The `DM` 4478bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4479bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 4480507e4973SMatthew G. Knepley 4481507e4973SMatthew G. Knepley Level: intermediate 4482507e4973SMatthew G. Knepley 4483db781477SPatrick Sanan .seealso: `DMGetSectionSF()`, `DMSetSectionSF()` 4484507e4973SMatthew G. Knepley */ 4485d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(DM dm, PetscSection localSection, PetscSection globalSection) 4486d71ae5a4SJacob Faibussowitsch { 4487507e4973SMatthew G. Knepley MPI_Comm comm; 4488507e4973SMatthew G. Knepley PetscLayout layout; 4489507e4973SMatthew G. Knepley const PetscInt *ranges; 4490507e4973SMatthew G. Knepley PetscInt pStart, pEnd, p, nroots; 4491507e4973SMatthew G. Knepley PetscMPIInt size, rank; 4492507e4973SMatthew G. Knepley PetscBool valid = PETSC_TRUE, gvalid; 4493507e4973SMatthew G. Knepley 4494507e4973SMatthew G. Knepley PetscFunctionBegin; 44959566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 4496507e4973SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 44979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 44989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 44999566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(globalSection, &pStart, &pEnd)); 45009566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &nroots)); 45019566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &layout)); 45029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(layout, 1)); 45039566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(layout, nroots)); 45049566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(layout)); 45059566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(layout, &ranges)); 4506507e4973SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 4507f741bcd2SMatthew G. Knepley PetscInt dof, cdof, off, gdof, gcdof, goff, gsize, d; 4508507e4973SMatthew G. Knepley 45099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(localSection, p, &dof)); 45109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(localSection, p, &off)); 45119566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(localSection, p, &cdof)); 45129566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(globalSection, p, &gdof)); 45139566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(globalSection, p, &gcdof)); 45149566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalSection, p, &goff)); 4515507e4973SMatthew G. Knepley if (!gdof) continue; /* Censored point */ 45169371c9d4SSatish Balay if ((gdof < 0 ? -(gdof + 1) : gdof) != dof) { 45179371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local dof %" PetscInt_FMT "\n", rank, gdof, p, dof)); 45189371c9d4SSatish Balay valid = PETSC_FALSE; 45199371c9d4SSatish Balay } 45209371c9d4SSatish Balay if (gcdof && (gcdof != cdof)) { 45219371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global constraints %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local constraints %" PetscInt_FMT "\n", rank, gcdof, p, cdof)); 45229371c9d4SSatish Balay valid = PETSC_FALSE; 45239371c9d4SSatish Balay } 4524507e4973SMatthew G. Knepley if (gdof < 0) { 4525507e4973SMatthew G. Knepley gsize = gdof < 0 ? -(gdof + 1) - gcdof : gdof - gcdof; 4526507e4973SMatthew G. Knepley for (d = 0; d < gsize; ++d) { 4527507e4973SMatthew G. Knepley PetscInt offset = -(goff + 1) + d, r; 4528507e4973SMatthew G. Knepley 45299566063dSJacob Faibussowitsch PetscCall(PetscFindInt(offset, size + 1, ranges, &r)); 4530507e4973SMatthew G. Knepley if (r < 0) r = -(r + 2); 45319371c9d4SSatish Balay if ((r < 0) || (r >= size)) { 45329371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Point %" PetscInt_FMT " mapped to invalid process %" PetscInt_FMT " (%" PetscInt_FMT ", %" PetscInt_FMT ")\n", rank, p, r, gdof, goff)); 45339371c9d4SSatish Balay valid = PETSC_FALSE; 45349371c9d4SSatish Balay break; 45359371c9d4SSatish Balay } 4536507e4973SMatthew G. Knepley } 4537507e4973SMatthew G. Knepley } 4538507e4973SMatthew G. Knepley } 45399566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&layout)); 45409566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, NULL)); 45411c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&valid, &gvalid, 1, MPIU_BOOL, MPI_LAND, comm)); 4542507e4973SMatthew G. Knepley if (!gvalid) { 45439566063dSJacob Faibussowitsch PetscCall(DMView(dm, NULL)); 4544507e4973SMatthew G. Knepley SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Inconsistent local and global sections"); 4545507e4973SMatthew G. Knepley } 4546507e4973SMatthew G. Knepley PetscFunctionReturn(0); 4547507e4973SMatthew G. Knepley } 4548f741bcd2SMatthew G. Knepley #endif 4549507e4973SMatthew G. Knepley 45505f06a3ddSJed Brown static PetscErrorCode DMGetIsoperiodicPointSF_Internal(DM dm, PetscSF *sf) 45516725e60dSJed Brown { 45526725e60dSJed Brown PetscErrorCode (*f)(DM, PetscSF *); 45536725e60dSJed Brown PetscFunctionBegin; 45546725e60dSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45556725e60dSJed Brown PetscValidPointer(sf, 2); 45565f06a3ddSJed Brown PetscCall(PetscObjectQueryFunction((PetscObject)dm, "DMGetIsoperiodicPointSF_C", &f)); 45576725e60dSJed Brown if (f) PetscCall(f(dm, sf)); 45586725e60dSJed Brown else *sf = dm->sf; 45596725e60dSJed Brown PetscFunctionReturn(0); 45606725e60dSJed Brown } 45616725e60dSJed Brown 456288ed4aceSMatthew G Knepley /*@ 4563bb7acecfSBarry Smith DMGetGlobalSection - Get the `PetscSection` encoding the global data layout for the `DM`. 456488ed4aceSMatthew G Knepley 4565d083f849SBarry Smith Collective on dm 45668b1ab98fSJed Brown 456788ed4aceSMatthew G Knepley Input Parameter: 4568bb7acecfSBarry Smith . dm - The `DM` 456988ed4aceSMatthew G Knepley 457088ed4aceSMatthew G Knepley Output Parameter: 4571bb7acecfSBarry Smith . section - The `PetscSection` 457288ed4aceSMatthew G Knepley 457388ed4aceSMatthew G Knepley Level: intermediate 457488ed4aceSMatthew G Knepley 4575bb7acecfSBarry Smith Note: 4576bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 457788ed4aceSMatthew G Knepley 4578db781477SPatrick Sanan .seealso: `DMSetLocalSection()`, `DMGetLocalSection()` 457988ed4aceSMatthew G Knepley @*/ 4580d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetGlobalSection(DM dm, PetscSection *section) 4581d71ae5a4SJacob Faibussowitsch { 458288ed4aceSMatthew G Knepley PetscFunctionBegin; 458388ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 458488ed4aceSMatthew G Knepley PetscValidPointer(section, 2); 45851bb6d2a8SBarry Smith if (!dm->globalSection) { 4586fd59a867SMatthew G. Knepley PetscSection s; 45876725e60dSJed Brown PetscSF sf; 4588fd59a867SMatthew G. Knepley 45899566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 45907a8be351SBarry Smith PetscCheck(s, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a default PetscSection in order to create a global PetscSection"); 45917a8be351SBarry Smith PetscCheck(dm->sf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a point PetscSF in order to create a global PetscSection"); 45925f06a3ddSJed Brown PetscCall(DMGetIsoperiodicPointSF_Internal(dm, &sf)); 45936725e60dSJed Brown PetscCall(PetscSectionCreateGlobalSection(s, sf, PETSC_FALSE, PETSC_FALSE, &dm->globalSection)); 45949566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&dm->map)); 45959566063dSJacob Faibussowitsch PetscCall(PetscSectionGetValueLayout(PetscObjectComm((PetscObject)dm), dm->globalSection, &dm->map)); 45969566063dSJacob Faibussowitsch PetscCall(PetscSectionViewFromOptions(dm->globalSection, NULL, "-global_section_view")); 459788ed4aceSMatthew G Knepley } 45981bb6d2a8SBarry Smith *section = dm->globalSection; 459988ed4aceSMatthew G Knepley PetscFunctionReturn(0); 460088ed4aceSMatthew G Knepley } 460188ed4aceSMatthew G Knepley 4602b21d0597SMatthew G Knepley /*@ 4603bb7acecfSBarry Smith DMSetGlobalSection - Set the `PetscSection` encoding the global data layout for the `DM`. 4604b21d0597SMatthew G Knepley 4605b21d0597SMatthew G Knepley Input Parameters: 4606bb7acecfSBarry Smith + dm - The `DM` 46075080bbdbSMatthew G Knepley - section - The PetscSection, or NULL 4608b21d0597SMatthew G Knepley 4609b21d0597SMatthew G Knepley Level: intermediate 4610b21d0597SMatthew G Knepley 4611bb7acecfSBarry Smith Note: 4612bb7acecfSBarry Smith Any existing `PetscSection` will be destroyed 4613b21d0597SMatthew G Knepley 4614db781477SPatrick Sanan .seealso: `DMGetGlobalSection()`, `DMSetLocalSection()` 4615b21d0597SMatthew G Knepley @*/ 4616d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetGlobalSection(DM dm, PetscSection section) 4617d71ae5a4SJacob Faibussowitsch { 4618b21d0597SMatthew G Knepley PetscFunctionBegin; 4619b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46205080bbdbSMatthew G Knepley if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 46219566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 46229566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 46231bb6d2a8SBarry Smith dm->globalSection = section; 4624497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 46259566063dSJacob Faibussowitsch if (section) PetscCall(DMDefaultSectionCheckConsistency_Internal(dm, dm->localSection, section)); 4626507e4973SMatthew G. Knepley #endif 4627b21d0597SMatthew G Knepley PetscFunctionReturn(0); 4628b21d0597SMatthew G Knepley } 4629b21d0597SMatthew G Knepley 463088ed4aceSMatthew G Knepley /*@ 4631bb7acecfSBarry Smith DMGetSectionSF - Get the `PetscSF` encoding the parallel dof overlap for the `DM`. If it has not been set, 4632bb7acecfSBarry Smith it is created from the default `PetscSection` layouts in the `DM`. 463388ed4aceSMatthew G Knepley 463488ed4aceSMatthew G Knepley Input Parameter: 4635bb7acecfSBarry Smith . dm - The `DM` 463688ed4aceSMatthew G Knepley 463788ed4aceSMatthew G Knepley Output Parameter: 4638bb7acecfSBarry Smith . sf - The `PetscSF` 463988ed4aceSMatthew G Knepley 464088ed4aceSMatthew G Knepley Level: intermediate 464188ed4aceSMatthew G Knepley 4642bb7acecfSBarry Smith Note: 4643bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 464488ed4aceSMatthew G Knepley 4645db781477SPatrick Sanan .seealso: `DMSetSectionSF()`, `DMCreateSectionSF()` 464688ed4aceSMatthew G Knepley @*/ 4647d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSectionSF(DM dm, PetscSF *sf) 4648d71ae5a4SJacob Faibussowitsch { 464988ed4aceSMatthew G Knepley PetscInt nroots; 465088ed4aceSMatthew G Knepley 465188ed4aceSMatthew G Knepley PetscFunctionBegin; 465288ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 465388ed4aceSMatthew G Knepley PetscValidPointer(sf, 2); 465448a46eb9SPierre Jolivet if (!dm->sectionSF) PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 46559566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sectionSF, &nroots, NULL, NULL, NULL)); 465688ed4aceSMatthew G Knepley if (nroots < 0) { 465788ed4aceSMatthew G Knepley PetscSection section, gSection; 465888ed4aceSMatthew G Knepley 46599566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 466031ea6d37SMatthew G Knepley if (section) { 46619566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gSection)); 46629566063dSJacob Faibussowitsch PetscCall(DMCreateSectionSF(dm, section, gSection)); 466331ea6d37SMatthew G Knepley } else { 46640298fd71SBarry Smith *sf = NULL; 466531ea6d37SMatthew G Knepley PetscFunctionReturn(0); 466631ea6d37SMatthew G Knepley } 466788ed4aceSMatthew G Knepley } 46681bb6d2a8SBarry Smith *sf = dm->sectionSF; 466988ed4aceSMatthew G Knepley PetscFunctionReturn(0); 467088ed4aceSMatthew G Knepley } 467188ed4aceSMatthew G Knepley 467288ed4aceSMatthew G Knepley /*@ 4673bb7acecfSBarry Smith DMSetSectionSF - Set the `PetscSF` encoding the parallel dof overlap for the `DM` 467488ed4aceSMatthew G Knepley 467588ed4aceSMatthew G Knepley Input Parameters: 4676bb7acecfSBarry Smith + dm - The `DM` 4677bb7acecfSBarry Smith - sf - The `PetscSF` 467888ed4aceSMatthew G Knepley 467988ed4aceSMatthew G Knepley Level: intermediate 468088ed4aceSMatthew G Knepley 4681bb7acecfSBarry Smith Note: 4682bb7acecfSBarry Smith Any previous `PetscSF` is destroyed 468388ed4aceSMatthew G Knepley 4684db781477SPatrick Sanan .seealso: `DMGetSectionSF()`, `DMCreateSectionSF()` 468588ed4aceSMatthew G Knepley @*/ 4686d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSectionSF(DM dm, PetscSF sf) 4687d71ae5a4SJacob Faibussowitsch { 468888ed4aceSMatthew G Knepley PetscFunctionBegin; 468988ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4690b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 46919566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 46929566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sectionSF)); 46931bb6d2a8SBarry Smith dm->sectionSF = sf; 469488ed4aceSMatthew G Knepley PetscFunctionReturn(0); 469588ed4aceSMatthew G Knepley } 469688ed4aceSMatthew G Knepley 469788ed4aceSMatthew G Knepley /*@C 4698bb7acecfSBarry Smith DMCreateSectionSF - Create the `PetscSF` encoding the parallel dof overlap for the `DM` based upon the `PetscSection`s 469988ed4aceSMatthew G Knepley describing the data layout. 470088ed4aceSMatthew G Knepley 470188ed4aceSMatthew G Knepley Input Parameters: 4702bb7acecfSBarry Smith + dm - The `DM` 4703bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4704bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 470588ed4aceSMatthew G Knepley 47061bb6d2a8SBarry Smith Level: developer 47071bb6d2a8SBarry Smith 4708bb7acecfSBarry Smith Note: 4709bb7acecfSBarry Smith One usually uses `DMGetSectionSF()` to obtain the `PetscSF` 4710bb7acecfSBarry Smith 4711bb7acecfSBarry Smith Developer Note: 4712bb7acecfSBarry Smith Since this routine has for arguments the two sections from the `DM` and puts the resulting `PetscSF` 4713bb7acecfSBarry Smith directly into the `DM`, perhaps this function should not take the local and global sections as 4714bb7acecfSBarry Smith input and should just obtain them from the `DM`? 47151bb6d2a8SBarry Smith 4716db781477SPatrick Sanan .seealso: `DMGetSectionSF()`, `DMSetSectionSF()`, `DMGetLocalSection()`, `DMGetGlobalSection()` 471788ed4aceSMatthew G Knepley @*/ 4718d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSectionSF(DM dm, PetscSection localSection, PetscSection globalSection) 4719d71ae5a4SJacob Faibussowitsch { 472088ed4aceSMatthew G Knepley PetscFunctionBegin; 472188ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47229566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphSection(dm->sectionSF, localSection, globalSection)); 472388ed4aceSMatthew G Knepley PetscFunctionReturn(0); 472488ed4aceSMatthew G Knepley } 4725af122d2aSMatthew G Knepley 4726b21d0597SMatthew G Knepley /*@ 4727bb7acecfSBarry Smith DMGetPointSF - Get the `PetscSF` encoding the parallel section point overlap for the `DM`. 4728bb7acecfSBarry Smith 4729bb7acecfSBarry Smith Not collective but the resulting `PetscSF` is collective 4730b21d0597SMatthew G Knepley 4731b21d0597SMatthew G Knepley Input Parameter: 4732bb7acecfSBarry Smith . dm - The `DM` 4733b21d0597SMatthew G Knepley 4734b21d0597SMatthew G Knepley Output Parameter: 4735bb7acecfSBarry Smith . sf - The `PetscSF` 4736b21d0597SMatthew G Knepley 4737b21d0597SMatthew G Knepley Level: intermediate 4738b21d0597SMatthew G Knepley 4739bb7acecfSBarry Smith Note: 4740bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 4741b21d0597SMatthew G Knepley 4742db781477SPatrick Sanan .seealso: `DMSetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4743b21d0597SMatthew G Knepley @*/ 4744d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetPointSF(DM dm, PetscSF *sf) 4745d71ae5a4SJacob Faibussowitsch { 4746b21d0597SMatthew G Knepley PetscFunctionBegin; 4747b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4748b21d0597SMatthew G Knepley PetscValidPointer(sf, 2); 4749b21d0597SMatthew G Knepley *sf = dm->sf; 4750b21d0597SMatthew G Knepley PetscFunctionReturn(0); 4751b21d0597SMatthew G Knepley } 4752b21d0597SMatthew G Knepley 4753057b4bcdSMatthew G Knepley /*@ 4754bb7acecfSBarry Smith DMSetPointSF - Set the `PetscSF` encoding the parallel section point overlap for the `DM`. 4755bb7acecfSBarry Smith 4756bb7acecfSBarry Smith Collective on dm 4757057b4bcdSMatthew G Knepley 4758057b4bcdSMatthew G Knepley Input Parameters: 4759bb7acecfSBarry Smith + dm - The `DM` 4760bb7acecfSBarry Smith - sf - The` PetscSF` 4761057b4bcdSMatthew G Knepley 4762057b4bcdSMatthew G Knepley Level: intermediate 4763057b4bcdSMatthew G Knepley 4764db781477SPatrick Sanan .seealso: `DMGetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4765057b4bcdSMatthew G Knepley @*/ 4766d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetPointSF(DM dm, PetscSF sf) 4767d71ae5a4SJacob Faibussowitsch { 4768057b4bcdSMatthew G Knepley PetscFunctionBegin; 4769057b4bcdSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4770b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 47719566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 47729566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sf)); 4773057b4bcdSMatthew G Knepley dm->sf = sf; 4774057b4bcdSMatthew G Knepley PetscFunctionReturn(0); 4775057b4bcdSMatthew G Knepley } 4776057b4bcdSMatthew G Knepley 47774f37162bSMatthew G. Knepley /*@ 4778bb7acecfSBarry Smith DMGetNaturalSF - Get the `PetscSF` encoding the map back to the original mesh ordering 47794f37162bSMatthew G. Knepley 47804f37162bSMatthew G. Knepley Input Parameter: 4781bb7acecfSBarry Smith . dm - The `DM` 47824f37162bSMatthew G. Knepley 47834f37162bSMatthew G. Knepley Output Parameter: 4784bb7acecfSBarry Smith . sf - The `PetscSF` 47854f37162bSMatthew G. Knepley 47864f37162bSMatthew G. Knepley Level: intermediate 47874f37162bSMatthew G. Knepley 4788bb7acecfSBarry Smith Note: 4789bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 47904f37162bSMatthew G. Knepley 4791db781477SPatrick Sanan .seealso: `DMSetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 47924f37162bSMatthew G. Knepley @*/ 4793d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNaturalSF(DM dm, PetscSF *sf) 4794d71ae5a4SJacob Faibussowitsch { 47954f37162bSMatthew G. Knepley PetscFunctionBegin; 47964f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47974f37162bSMatthew G. Knepley PetscValidPointer(sf, 2); 47984f37162bSMatthew G. Knepley *sf = dm->sfNatural; 47994f37162bSMatthew G. Knepley PetscFunctionReturn(0); 48004f37162bSMatthew G. Knepley } 48014f37162bSMatthew G. Knepley 48024f37162bSMatthew G. Knepley /*@ 48034f37162bSMatthew G. Knepley DMSetNaturalSF - Set the PetscSF encoding the map back to the original mesh ordering 48044f37162bSMatthew G. Knepley 48054f37162bSMatthew G. Knepley Input Parameters: 48064f37162bSMatthew G. Knepley + dm - The DM 48074f37162bSMatthew G. Knepley - sf - The PetscSF 48084f37162bSMatthew G. Knepley 48094f37162bSMatthew G. Knepley Level: intermediate 48104f37162bSMatthew G. Knepley 4811db781477SPatrick Sanan .seealso: `DMGetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 48124f37162bSMatthew G. Knepley @*/ 4813d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNaturalSF(DM dm, PetscSF sf) 4814d71ae5a4SJacob Faibussowitsch { 48154f37162bSMatthew G. Knepley PetscFunctionBegin; 48164f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48174f37162bSMatthew G. Knepley if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 48189566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 48199566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sfNatural)); 48204f37162bSMatthew G. Knepley dm->sfNatural = sf; 48214f37162bSMatthew G. Knepley PetscFunctionReturn(0); 48224f37162bSMatthew G. Knepley } 48234f37162bSMatthew G. Knepley 4824d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetDefaultAdjacency_Private(DM dm, PetscInt f, PetscObject disc) 4825d71ae5a4SJacob Faibussowitsch { 482634aa8a36SMatthew G. Knepley PetscClassId id; 482734aa8a36SMatthew G. Knepley 482834aa8a36SMatthew G. Knepley PetscFunctionBegin; 48299566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 483034aa8a36SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 48319566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 483234aa8a36SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 48339566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_TRUE, PETSC_FALSE)); 483417c1d62eSMatthew G. Knepley } else { 48359566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 483634aa8a36SMatthew G. Knepley } 483734aa8a36SMatthew G. Knepley PetscFunctionReturn(0); 483834aa8a36SMatthew G. Knepley } 483934aa8a36SMatthew G. Knepley 4840d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFieldEnlarge_Static(DM dm, PetscInt NfNew) 4841d71ae5a4SJacob Faibussowitsch { 484244a7f3ddSMatthew G. Knepley RegionField *tmpr; 484344a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf, f; 484444a7f3ddSMatthew G. Knepley 484544a7f3ddSMatthew G. Knepley PetscFunctionBegin; 484644a7f3ddSMatthew G. Knepley if (Nf >= NfNew) PetscFunctionReturn(0); 48479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NfNew, &tmpr)); 484844a7f3ddSMatthew G. Knepley for (f = 0; f < Nf; ++f) tmpr[f] = dm->fields[f]; 48499371c9d4SSatish Balay for (f = Nf; f < NfNew; ++f) { 48509371c9d4SSatish Balay tmpr[f].disc = NULL; 48519371c9d4SSatish Balay tmpr[f].label = NULL; 48529371c9d4SSatish Balay tmpr[f].avoidTensor = PETSC_FALSE; 48539371c9d4SSatish Balay } 48549566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 485544a7f3ddSMatthew G. Knepley dm->Nf = NfNew; 485644a7f3ddSMatthew G. Knepley dm->fields = tmpr; 485744a7f3ddSMatthew G. Knepley PetscFunctionReturn(0); 485844a7f3ddSMatthew G. Knepley } 485944a7f3ddSMatthew G. Knepley 486044a7f3ddSMatthew G. Knepley /*@ 486144a7f3ddSMatthew G. Knepley DMClearFields - Remove all fields from the DM 486244a7f3ddSMatthew G. Knepley 4863d083f849SBarry Smith Logically collective on dm 486444a7f3ddSMatthew G. Knepley 486544a7f3ddSMatthew G. Knepley Input Parameter: 486644a7f3ddSMatthew G. Knepley . dm - The DM 486744a7f3ddSMatthew G. Knepley 486844a7f3ddSMatthew G. Knepley Level: intermediate 486944a7f3ddSMatthew G. Knepley 4870db781477SPatrick Sanan .seealso: `DMGetNumFields()`, `DMSetNumFields()`, `DMSetField()` 487144a7f3ddSMatthew G. Knepley @*/ 4872d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearFields(DM dm) 4873d71ae5a4SJacob Faibussowitsch { 487444a7f3ddSMatthew G. Knepley PetscInt f; 487544a7f3ddSMatthew G. Knepley 487644a7f3ddSMatthew G. Knepley PetscFunctionBegin; 487744a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 487844a7f3ddSMatthew G. Knepley for (f = 0; f < dm->Nf; ++f) { 48799566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 48809566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 488144a7f3ddSMatthew G. Knepley } 48829566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 488344a7f3ddSMatthew G. Knepley dm->fields = NULL; 488444a7f3ddSMatthew G. Knepley dm->Nf = 0; 488544a7f3ddSMatthew G. Knepley PetscFunctionReturn(0); 488644a7f3ddSMatthew G. Knepley } 488744a7f3ddSMatthew G. Knepley 4888689b5837SMatthew G. Knepley /*@ 4889689b5837SMatthew G. Knepley DMGetNumFields - Get the number of fields in the DM 4890689b5837SMatthew G. Knepley 4891689b5837SMatthew G. Knepley Not collective 4892689b5837SMatthew G. Knepley 4893689b5837SMatthew G. Knepley Input Parameter: 4894689b5837SMatthew G. Knepley . dm - The DM 4895689b5837SMatthew G. Knepley 4896689b5837SMatthew G. Knepley Output Parameter: 4897689b5837SMatthew G. Knepley . Nf - The number of fields 4898689b5837SMatthew G. Knepley 4899689b5837SMatthew G. Knepley Level: intermediate 4900689b5837SMatthew G. Knepley 4901db781477SPatrick Sanan .seealso: `DMSetNumFields()`, `DMSetField()` 4902689b5837SMatthew G. Knepley @*/ 4903d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumFields(DM dm, PetscInt *numFields) 4904d71ae5a4SJacob Faibussowitsch { 49050f21e855SMatthew G. Knepley PetscFunctionBegin; 49060f21e855SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4907534a8f05SLisandro Dalcin PetscValidIntPointer(numFields, 2); 490844a7f3ddSMatthew G. Knepley *numFields = dm->Nf; 4909af122d2aSMatthew G Knepley PetscFunctionReturn(0); 4910af122d2aSMatthew G Knepley } 4911af122d2aSMatthew G Knepley 4912689b5837SMatthew G. Knepley /*@ 4913689b5837SMatthew G. Knepley DMSetNumFields - Set the number of fields in the DM 4914689b5837SMatthew G. Knepley 4915d083f849SBarry Smith Logically collective on dm 4916689b5837SMatthew G. Knepley 4917689b5837SMatthew G. Knepley Input Parameters: 4918689b5837SMatthew G. Knepley + dm - The DM 4919689b5837SMatthew G. Knepley - Nf - The number of fields 4920689b5837SMatthew G. Knepley 4921689b5837SMatthew G. Knepley Level: intermediate 4922689b5837SMatthew G. Knepley 4923db781477SPatrick Sanan .seealso: `DMGetNumFields()`, `DMSetField()` 4924689b5837SMatthew G. Knepley @*/ 4925d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNumFields(DM dm, PetscInt numFields) 4926d71ae5a4SJacob Faibussowitsch { 49270f21e855SMatthew G. Knepley PetscInt Nf, f; 4928af122d2aSMatthew G Knepley 4929af122d2aSMatthew G Knepley PetscFunctionBegin; 4930af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49319566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 49320f21e855SMatthew G. Knepley for (f = Nf; f < numFields; ++f) { 49330f21e855SMatthew G. Knepley PetscContainer obj; 49340f21e855SMatthew G. Knepley 49359566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject)dm), &obj)); 49369566063dSJacob Faibussowitsch PetscCall(DMAddField(dm, NULL, (PetscObject)obj)); 49379566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&obj)); 4938af122d2aSMatthew G Knepley } 4939af122d2aSMatthew G Knepley PetscFunctionReturn(0); 4940af122d2aSMatthew G Knepley } 4941af122d2aSMatthew G Knepley 4942c1929be8SMatthew G. Knepley /*@ 4943bb7acecfSBarry Smith DMGetField - Return the `DMLabel` and discretization object for a given `DM` field 4944c1929be8SMatthew G. Knepley 4945c1929be8SMatthew G. Knepley Not collective 4946c1929be8SMatthew G. Knepley 4947c1929be8SMatthew G. Knepley Input Parameters: 4948bb7acecfSBarry Smith + dm - The `DM` 4949c1929be8SMatthew G. Knepley - f - The field number 4950c1929be8SMatthew G. Knepley 495144a7f3ddSMatthew G. Knepley Output Parameters: 4952bb7acecfSBarry Smith + label - The label indicating the support of the field, or NULL for the entire mesh (pass in NULL if not needed) 4953bb7acecfSBarry Smith - disc - The discretization object (pass in NULL if not needed) 4954c1929be8SMatthew G. Knepley 495544a7f3ddSMatthew G. Knepley Level: intermediate 4956c1929be8SMatthew G. Knepley 4957db781477SPatrick Sanan .seealso: `DMAddField()`, `DMSetField()` 4958c1929be8SMatthew G. Knepley @*/ 4959d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetField(DM dm, PetscInt f, DMLabel *label, PetscObject *disc) 4960d71ae5a4SJacob Faibussowitsch { 4961af122d2aSMatthew G Knepley PetscFunctionBegin; 4962af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4963bb7acecfSBarry Smith PetscValidPointer(disc, 4); 49647a8be351SBarry Smith PetscCheck((f >= 0) && (f < dm->Nf), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, dm->Nf); 496544a7f3ddSMatthew G. Knepley if (label) *label = dm->fields[f].label; 4966bb7acecfSBarry Smith if (disc) *disc = dm->fields[f].disc; 4967decb47aaSMatthew G. Knepley PetscFunctionReturn(0); 4968decb47aaSMatthew G. Knepley } 4969decb47aaSMatthew G. Knepley 4970083401c6SMatthew G. Knepley /* Does not clear the DS */ 4971d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField_Internal(DM dm, PetscInt f, DMLabel label, PetscObject disc) 4972d71ae5a4SJacob Faibussowitsch { 4973083401c6SMatthew G. Knepley PetscFunctionBegin; 49749566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, f + 1)); 49759566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 49769566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 4977083401c6SMatthew G. Knepley dm->fields[f].label = label; 4978bb7acecfSBarry Smith dm->fields[f].disc = disc; 49799566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 4980bb7acecfSBarry Smith PetscCall(PetscObjectReference((PetscObject)disc)); 4981083401c6SMatthew G. Knepley PetscFunctionReturn(0); 4982083401c6SMatthew G. Knepley } 4983083401c6SMatthew G. Knepley 498446560f82SMatthew G. Knepley /*@C 4985bb7acecfSBarry Smith DMSetField - Set the discretization object for a given `DM` field. Usually one would call `DMAddField()` which automatically handles 4986bb7acecfSBarry Smith the field numbering. 4987c1929be8SMatthew G. Knepley 4988d083f849SBarry Smith Logically collective on dm 4989c1929be8SMatthew G. Knepley 4990c1929be8SMatthew G. Knepley Input Parameters: 4991bb7acecfSBarry Smith + dm - The `DM` 4992c1929be8SMatthew G. Knepley . f - The field number 499344a7f3ddSMatthew G. Knepley . label - The label indicating the support of the field, or NULL for the entire mesh 4994bb7acecfSBarry Smith - disc - The discretization object 4995c1929be8SMatthew G. Knepley 499644a7f3ddSMatthew G. Knepley Level: intermediate 4997c1929be8SMatthew G. Knepley 4998db781477SPatrick Sanan .seealso: `DMAddField()`, `DMGetField()` 4999c1929be8SMatthew G. Knepley @*/ 5000d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField(DM dm, PetscInt f, DMLabel label, PetscObject disc) 5001d71ae5a4SJacob Faibussowitsch { 5002decb47aaSMatthew G. Knepley PetscFunctionBegin; 5003decb47aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5004e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 5005bb7acecfSBarry Smith PetscValidHeader(disc, 4); 50067a8be351SBarry Smith PetscCheck(f >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be non-negative", f); 5007bb7acecfSBarry Smith PetscCall(DMSetField_Internal(dm, f, label, disc)); 5008bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, f, disc)); 50099566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 501044a7f3ddSMatthew G. Knepley PetscFunctionReturn(0); 501144a7f3ddSMatthew G. Knepley } 501244a7f3ddSMatthew G. Knepley 501346560f82SMatthew G. Knepley /*@C 5014bb7acecfSBarry Smith DMAddField - Add a field to a `DM` object. A field is a function space defined by of a set of discretization points (geometric entities) 5015bb7acecfSBarry Smith and a discretization object that defines the function space associated with those points. 501644a7f3ddSMatthew G. Knepley 5017d083f849SBarry Smith Logically collective on dm 501844a7f3ddSMatthew G. Knepley 501944a7f3ddSMatthew G. Knepley Input Parameters: 5020bb7acecfSBarry Smith + dm - The `DM` 502144a7f3ddSMatthew G. Knepley . label - The label indicating the support of the field, or NULL for the entire mesh 5022bb7acecfSBarry Smith - disc - The discretization object 502344a7f3ddSMatthew G. Knepley 502444a7f3ddSMatthew G. Knepley Level: intermediate 502544a7f3ddSMatthew G. Knepley 5026bb7acecfSBarry Smith Notes: 5027bb7acecfSBarry Smith The label already exists or will be added to the `DM` with `DMSetLabel()`. 5028bb7acecfSBarry Smith 5029bb7acecfSBarry Smith For example, a piecewise continous pressure field can be defined by coefficients at the cell centers of a mesh and piecewise constant functions 5030bb7acecfSBarry Smith within each cell. Thus a specific function in the space is defined by the combination of a `Vec` containing the coefficients, a `DM` defining the 5031bb7acecfSBarry Smith geometry entities, a `DMLabel` indicating a subset of those geometric entities, and a discretization object, such as a `PetscFE`. 5032bb7acecfSBarry Smith 5033bb7acecfSBarry Smith .seealso: `DMSetLabel()`, `DMSetField()`, `DMGetField()`, `PetscFE` 503444a7f3ddSMatthew G. Knepley @*/ 5035d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddField(DM dm, DMLabel label, PetscObject disc) 5036d71ae5a4SJacob Faibussowitsch { 503744a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf; 503844a7f3ddSMatthew G. Knepley 503944a7f3ddSMatthew G. Knepley PetscFunctionBegin; 504044a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5041064a246eSJacob Faibussowitsch if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 5042bb7acecfSBarry Smith PetscValidHeader(disc, 3); 50439566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, Nf + 1)); 504444a7f3ddSMatthew G. Knepley dm->fields[Nf].label = label; 5045bb7acecfSBarry Smith dm->fields[Nf].disc = disc; 50469566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 5047bb7acecfSBarry Smith PetscCall(PetscObjectReference((PetscObject)disc)); 5048bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, Nf, disc)); 50499566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 5050af122d2aSMatthew G Knepley PetscFunctionReturn(0); 5051af122d2aSMatthew G Knepley } 50526636e97aSMatthew G Knepley 5053e5e52638SMatthew G. Knepley /*@ 5054e0b68406SMatthew Knepley DMSetFieldAvoidTensor - Set flag to avoid defining the field on tensor cells 5055e0b68406SMatthew Knepley 5056e0b68406SMatthew Knepley Logically collective on dm 5057e0b68406SMatthew Knepley 5058e0b68406SMatthew Knepley Input Parameters: 5059bb7acecfSBarry Smith + dm - The `DM` 5060e0b68406SMatthew Knepley . f - The field index 5061bb7acecfSBarry Smith - avoidTensor - `PETSC_TRUE` to skip defining the field on tensor cells 5062e0b68406SMatthew Knepley 5063e0b68406SMatthew Knepley Level: intermediate 5064e0b68406SMatthew Knepley 5065db781477SPatrick Sanan .seealso: `DMGetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()` 5066e0b68406SMatthew Knepley @*/ 5067d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFieldAvoidTensor(DM dm, PetscInt f, PetscBool avoidTensor) 5068d71ae5a4SJacob Faibussowitsch { 5069e0b68406SMatthew Knepley PetscFunctionBegin; 507063a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5071e0b68406SMatthew Knepley dm->fields[f].avoidTensor = avoidTensor; 5072e0b68406SMatthew Knepley PetscFunctionReturn(0); 5073e0b68406SMatthew Knepley } 5074e0b68406SMatthew Knepley 5075e0b68406SMatthew Knepley /*@ 5076e0b68406SMatthew Knepley DMGetFieldAvoidTensor - Get flag to avoid defining the field on tensor cells 5077e0b68406SMatthew Knepley 5078bb7acecfSBarry Smith Not collective 5079e0b68406SMatthew Knepley 5080e0b68406SMatthew Knepley Input Parameters: 5081bb7acecfSBarry Smith + dm - The `DM` 5082e0b68406SMatthew Knepley - f - The field index 5083e0b68406SMatthew Knepley 5084e0b68406SMatthew Knepley Output Parameter: 5085e0b68406SMatthew Knepley . avoidTensor - The flag to avoid defining the field on tensor cells 5086e0b68406SMatthew Knepley 5087e0b68406SMatthew Knepley Level: intermediate 5088e0b68406SMatthew Knepley 5089bb7acecfSBarry Smith .seealso: `DMAddField()`, `DMSetField()`, `DMGetField()`, `DMSetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()` 5090e0b68406SMatthew Knepley @*/ 5091d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFieldAvoidTensor(DM dm, PetscInt f, PetscBool *avoidTensor) 5092d71ae5a4SJacob Faibussowitsch { 5093e0b68406SMatthew Knepley PetscFunctionBegin; 509463a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5095e0b68406SMatthew Knepley *avoidTensor = dm->fields[f].avoidTensor; 5096e0b68406SMatthew Knepley PetscFunctionReturn(0); 5097e0b68406SMatthew Knepley } 5098e0b68406SMatthew Knepley 5099e0b68406SMatthew Knepley /*@ 5100bb7acecfSBarry Smith DMCopyFields - Copy the discretizations for the `DM` into another `DM` 5101e5e52638SMatthew G. Knepley 5102d083f849SBarry Smith Collective on dm 5103e5e52638SMatthew G. Knepley 5104e5e52638SMatthew G. Knepley Input Parameter: 5105bb7acecfSBarry Smith . dm - The `DM` 5106e5e52638SMatthew G. Knepley 5107e5e52638SMatthew G. Knepley Output Parameter: 5108bb7acecfSBarry Smith . newdm - The `DM` 5109e5e52638SMatthew G. Knepley 5110e5e52638SMatthew G. Knepley Level: advanced 5111e5e52638SMatthew G. Knepley 5112db781477SPatrick Sanan .seealso: `DMGetField()`, `DMSetField()`, `DMAddField()`, `DMCopyDS()`, `DMGetDS()`, `DMGetCellDS()` 5113e5e52638SMatthew G. Knepley @*/ 5114d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyFields(DM dm, DM newdm) 5115d71ae5a4SJacob Faibussowitsch { 5116e5e52638SMatthew G. Knepley PetscInt Nf, f; 5117e5e52638SMatthew G. Knepley 5118e5e52638SMatthew G. Knepley PetscFunctionBegin; 5119e5e52638SMatthew G. Knepley if (dm == newdm) PetscFunctionReturn(0); 51209566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 51219566063dSJacob Faibussowitsch PetscCall(DMClearFields(newdm)); 5122e5e52638SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5123e5e52638SMatthew G. Knepley DMLabel label; 5124e5e52638SMatthew G. Knepley PetscObject field; 512534aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 5126e5e52638SMatthew G. Knepley 51279566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, &label, &field)); 51289566063dSJacob Faibussowitsch PetscCall(DMSetField(newdm, f, label, field)); 51299566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, f, &useCone, &useClosure)); 51309566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(newdm, f, useCone, useClosure)); 513134aa8a36SMatthew G. Knepley } 513234aa8a36SMatthew G. Knepley PetscFunctionReturn(0); 513334aa8a36SMatthew G. Knepley } 513434aa8a36SMatthew G. Knepley 513534aa8a36SMatthew G. Knepley /*@ 513634aa8a36SMatthew G. Knepley DMGetAdjacency - Returns the flags for determining variable influence 513734aa8a36SMatthew G. Knepley 513834aa8a36SMatthew G. Knepley Not collective 513934aa8a36SMatthew G. Knepley 514034aa8a36SMatthew G. Knepley Input Parameters: 514134aa8a36SMatthew G. Knepley + dm - The DM object 514234aa8a36SMatthew G. Knepley - f - The field number, or PETSC_DEFAULT for the default adjacency 514334aa8a36SMatthew G. Knepley 5144d8d19677SJose E. Roman Output Parameters: 514534aa8a36SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 514634aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 514734aa8a36SMatthew G. Knepley 514834aa8a36SMatthew G. Knepley Notes: 514934aa8a36SMatthew G. Knepley $ FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 515034aa8a36SMatthew G. Knepley $ FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 515134aa8a36SMatthew G. Knepley $ FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 5152979e053dSMatthew G. Knepley Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 515334aa8a36SMatthew G. Knepley 515434aa8a36SMatthew G. Knepley Level: developer 515534aa8a36SMatthew G. Knepley 5156db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMGetField()`, `DMSetField()` 515734aa8a36SMatthew G. Knepley @*/ 5158d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAdjacency(DM dm, PetscInt f, PetscBool *useCone, PetscBool *useClosure) 5159d71ae5a4SJacob Faibussowitsch { 516034aa8a36SMatthew G. Knepley PetscFunctionBegin; 516134aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5162534a8f05SLisandro Dalcin if (useCone) PetscValidBoolPointer(useCone, 3); 5163534a8f05SLisandro Dalcin if (useClosure) PetscValidBoolPointer(useClosure, 4); 516434aa8a36SMatthew G. Knepley if (f < 0) { 516534aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->adjacency[0]; 516634aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->adjacency[1]; 516734aa8a36SMatthew G. Knepley } else { 516834aa8a36SMatthew G. Knepley PetscInt Nf; 516934aa8a36SMatthew G. Knepley 51709566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 51717a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 517234aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->fields[f].adjacency[0]; 517334aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->fields[f].adjacency[1]; 517434aa8a36SMatthew G. Knepley } 517534aa8a36SMatthew G. Knepley PetscFunctionReturn(0); 517634aa8a36SMatthew G. Knepley } 517734aa8a36SMatthew G. Knepley 517834aa8a36SMatthew G. Knepley /*@ 517934aa8a36SMatthew G. Knepley DMSetAdjacency - Set the flags for determining variable influence 518034aa8a36SMatthew G. Knepley 518134aa8a36SMatthew G. Knepley Not collective 518234aa8a36SMatthew G. Knepley 518334aa8a36SMatthew G. Knepley Input Parameters: 518434aa8a36SMatthew G. Knepley + dm - The DM object 518534aa8a36SMatthew G. Knepley . f - The field number 518634aa8a36SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 518734aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 518834aa8a36SMatthew G. Knepley 518934aa8a36SMatthew G. Knepley Notes: 519034aa8a36SMatthew G. Knepley $ FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 519134aa8a36SMatthew G. Knepley $ FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 519234aa8a36SMatthew G. Knepley $ FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 5193979e053dSMatthew G. Knepley Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 519434aa8a36SMatthew G. Knepley 519534aa8a36SMatthew G. Knepley Level: developer 519634aa8a36SMatthew G. Knepley 5197db781477SPatrick Sanan .seealso: `DMGetAdjacency()`, `DMGetField()`, `DMSetField()` 519834aa8a36SMatthew G. Knepley @*/ 5199d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAdjacency(DM dm, PetscInt f, PetscBool useCone, PetscBool useClosure) 5200d71ae5a4SJacob Faibussowitsch { 520134aa8a36SMatthew G. Knepley PetscFunctionBegin; 520234aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 520334aa8a36SMatthew G. Knepley if (f < 0) { 520434aa8a36SMatthew G. Knepley dm->adjacency[0] = useCone; 520534aa8a36SMatthew G. Knepley dm->adjacency[1] = useClosure; 520634aa8a36SMatthew G. Knepley } else { 520734aa8a36SMatthew G. Knepley PetscInt Nf; 520834aa8a36SMatthew G. Knepley 52099566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 52107a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 521134aa8a36SMatthew G. Knepley dm->fields[f].adjacency[0] = useCone; 521234aa8a36SMatthew G. Knepley dm->fields[f].adjacency[1] = useClosure; 5213e5e52638SMatthew G. Knepley } 5214e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5215e5e52638SMatthew G. Knepley } 5216e5e52638SMatthew G. Knepley 5217b0441da4SMatthew G. Knepley /*@ 5218b0441da4SMatthew G. Knepley DMGetBasicAdjacency - Returns the flags for determining variable influence, using either the default or field 0 if it is defined 5219b0441da4SMatthew G. Knepley 5220b0441da4SMatthew G. Knepley Not collective 5221b0441da4SMatthew G. Knepley 5222f899ff85SJose E. Roman Input Parameter: 5223b0441da4SMatthew G. Knepley . dm - The DM object 5224b0441da4SMatthew G. Knepley 5225d8d19677SJose E. Roman Output Parameters: 5226b0441da4SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 5227b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5228b0441da4SMatthew G. Knepley 5229b0441da4SMatthew G. Knepley Notes: 5230b0441da4SMatthew G. Knepley $ FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 5231b0441da4SMatthew G. Knepley $ FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 5232b0441da4SMatthew G. Knepley $ FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 5233b0441da4SMatthew G. Knepley 5234b0441da4SMatthew G. Knepley Level: developer 5235b0441da4SMatthew G. Knepley 5236db781477SPatrick Sanan .seealso: `DMSetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5237b0441da4SMatthew G. Knepley @*/ 5238d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasicAdjacency(DM dm, PetscBool *useCone, PetscBool *useClosure) 5239d71ae5a4SJacob Faibussowitsch { 5240b0441da4SMatthew G. Knepley PetscInt Nf; 5241b0441da4SMatthew G. Knepley 5242b0441da4SMatthew G. Knepley PetscFunctionBegin; 5243b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5244064a246eSJacob Faibussowitsch if (useCone) PetscValidBoolPointer(useCone, 2); 5245064a246eSJacob Faibussowitsch if (useClosure) PetscValidBoolPointer(useClosure, 3); 52469566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5247b0441da4SMatthew G. Knepley if (!Nf) { 52489566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5249b0441da4SMatthew G. Knepley } else { 52509566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, 0, useCone, useClosure)); 5251b0441da4SMatthew G. Knepley } 5252b0441da4SMatthew G. Knepley PetscFunctionReturn(0); 5253b0441da4SMatthew G. Knepley } 5254b0441da4SMatthew G. Knepley 5255b0441da4SMatthew G. Knepley /*@ 5256b0441da4SMatthew G. Knepley DMSetBasicAdjacency - Set the flags for determining variable influence, using either the default or field 0 if it is defined 5257b0441da4SMatthew G. Knepley 5258b0441da4SMatthew G. Knepley Not collective 5259b0441da4SMatthew G. Knepley 5260b0441da4SMatthew G. Knepley Input Parameters: 5261b0441da4SMatthew G. Knepley + dm - The DM object 5262b0441da4SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 5263b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5264b0441da4SMatthew G. Knepley 5265b0441da4SMatthew G. Knepley Notes: 5266b0441da4SMatthew G. Knepley $ FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 5267b0441da4SMatthew G. Knepley $ FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 5268b0441da4SMatthew G. Knepley $ FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 5269b0441da4SMatthew G. Knepley 5270b0441da4SMatthew G. Knepley Level: developer 5271b0441da4SMatthew G. Knepley 5272db781477SPatrick Sanan .seealso: `DMGetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5273b0441da4SMatthew G. Knepley @*/ 5274d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetBasicAdjacency(DM dm, PetscBool useCone, PetscBool useClosure) 5275d71ae5a4SJacob Faibussowitsch { 5276b0441da4SMatthew G. Knepley PetscInt Nf; 5277b0441da4SMatthew G. Knepley 5278b0441da4SMatthew G. Knepley PetscFunctionBegin; 5279b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 52809566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5281b0441da4SMatthew G. Knepley if (!Nf) { 52829566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5283b0441da4SMatthew G. Knepley } else { 52849566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, 0, useCone, useClosure)); 5285e5e52638SMatthew G. Knepley } 5286e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5287e5e52638SMatthew G. Knepley } 5288e5e52638SMatthew G. Knepley 5289d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompleteBCLabels_Internal(DM dm) 5290d71ae5a4SJacob Faibussowitsch { 5291799db056SMatthew G. Knepley DM plex; 5292799db056SMatthew G. Knepley DMLabel *labels, *glabels; 5293799db056SMatthew G. Knepley const char **names; 5294799db056SMatthew G. Knepley char *sendNames, *recvNames; 5295799db056SMatthew G. Knepley PetscInt Nds, s, maxLabels = 0, maxLen = 0, gmaxLen, Nl = 0, gNl, l, gl, m; 5296799db056SMatthew G. Knepley size_t len; 5297799db056SMatthew G. Knepley MPI_Comm comm; 5298799db056SMatthew G. Knepley PetscMPIInt rank, size, p, *counts, *displs; 5299783e2ec8SMatthew G. Knepley 5300783e2ec8SMatthew G. Knepley PetscFunctionBegin; 5301799db056SMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 5302799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(comm, &size)); 5303799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5304799db056SMatthew G. Knepley PetscCall(DMGetNumDS(dm, &Nds)); 5305799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5306799db056SMatthew G. Knepley PetscDS dsBC; 5307799db056SMatthew G. Knepley PetscInt numBd; 5308799db056SMatthew G. Knepley 5309799db056SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC)); 5310799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5311799db056SMatthew G. Knepley maxLabels += numBd; 5312799db056SMatthew G. Knepley } 5313799db056SMatthew G. Knepley PetscCall(PetscCalloc1(maxLabels, &labels)); 5314799db056SMatthew G. Knepley /* Get list of labels to be completed */ 5315799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5316799db056SMatthew G. Knepley PetscDS dsBC; 5317799db056SMatthew G. Knepley PetscInt numBd, bd; 5318799db056SMatthew G. Knepley 5319799db056SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC)); 5320799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5321799db056SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 5322799db056SMatthew G. Knepley DMLabel label; 5323799db056SMatthew G. Knepley PetscInt field; 5324799db056SMatthew G. Knepley PetscObject obj; 5325799db056SMatthew G. Knepley PetscClassId id; 5326799db056SMatthew G. Knepley 5327799db056SMatthew G. Knepley PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 53289566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 53299566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 5330799db056SMatthew G. Knepley if (!(id == PETSCFE_CLASSID) || !label) continue; 53319371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 53329371c9d4SSatish Balay if (labels[l] == label) break; 5333799db056SMatthew G. Knepley if (l == Nl) labels[Nl++] = label; 5334783e2ec8SMatthew G. Knepley } 5335799db056SMatthew G. Knepley } 5336799db056SMatthew G. Knepley /* Get label names */ 5337799db056SMatthew G. Knepley PetscCall(PetscMalloc1(Nl, &names)); 5338799db056SMatthew G. Knepley for (l = 0; l < Nl; ++l) PetscCall(PetscObjectGetName((PetscObject)labels[l], &names[l])); 53399371c9d4SSatish Balay for (l = 0; l < Nl; ++l) { 53409371c9d4SSatish Balay PetscCall(PetscStrlen(names[l], &len)); 53419371c9d4SSatish Balay maxLen = PetscMax(maxLen, (PetscInt)len + 2); 53429371c9d4SSatish Balay } 5343799db056SMatthew G. Knepley PetscCall(PetscFree(labels)); 5344799db056SMatthew G. Knepley PetscCallMPI(MPI_Allreduce(&maxLen, &gmaxLen, 1, MPIU_INT, MPI_MAX, comm)); 5345799db056SMatthew G. Knepley PetscCall(PetscCalloc1(Nl * gmaxLen, &sendNames)); 5346799db056SMatthew G. Knepley for (l = 0; l < Nl; ++l) PetscCall(PetscStrcpy(&sendNames[gmaxLen * l], names[l])); 5347799db056SMatthew G. Knepley PetscCall(PetscFree(names)); 5348799db056SMatthew G. Knepley /* Put all names on all processes */ 5349799db056SMatthew G. Knepley PetscCall(PetscCalloc2(size, &counts, size + 1, &displs)); 5350799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgather(&Nl, 1, MPI_INT, counts, 1, MPI_INT, comm)); 5351799db056SMatthew G. Knepley for (p = 0; p < size; ++p) displs[p + 1] = displs[p] + counts[p]; 5352799db056SMatthew G. Knepley gNl = displs[size]; 53539371c9d4SSatish Balay for (p = 0; p < size; ++p) { 53549371c9d4SSatish Balay counts[p] *= gmaxLen; 53559371c9d4SSatish Balay displs[p] *= gmaxLen; 53569371c9d4SSatish Balay } 5357799db056SMatthew G. Knepley PetscCall(PetscCalloc2(gNl * gmaxLen, &recvNames, gNl, &glabels)); 5358799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgatherv(sendNames, counts[rank], MPI_CHAR, recvNames, counts, displs, MPI_CHAR, comm)); 5359799db056SMatthew G. Knepley PetscCall(PetscFree2(counts, displs)); 5360799db056SMatthew G. Knepley PetscCall(PetscFree(sendNames)); 5361799db056SMatthew G. Knepley for (l = 0, gl = 0; l < gNl; ++l) { 5362799db056SMatthew G. Knepley PetscCall(DMGetLabel(dm, &recvNames[l * gmaxLen], &glabels[gl])); 5363799db056SMatthew G. Knepley PetscCheck(glabels[gl], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Label %s missing on rank %d", &recvNames[l * gmaxLen], rank); 53649371c9d4SSatish Balay for (m = 0; m < gl; ++m) 53659371c9d4SSatish Balay if (glabels[m] == glabels[gl]) continue; 53669566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 5367799db056SMatthew G. Knepley PetscCall(DMPlexLabelComplete(plex, glabels[gl])); 53689566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 5369799db056SMatthew G. Knepley ++gl; 5370783e2ec8SMatthew G. Knepley } 5371799db056SMatthew G. Knepley PetscCall(PetscFree2(recvNames, glabels)); 5372783e2ec8SMatthew G. Knepley PetscFunctionReturn(0); 5373783e2ec8SMatthew G. Knepley } 5374783e2ec8SMatthew G. Knepley 5375d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDSEnlarge_Static(DM dm, PetscInt NdsNew) 5376d71ae5a4SJacob Faibussowitsch { 5377e5e52638SMatthew G. Knepley DMSpace *tmpd; 5378e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5379e5e52638SMatthew G. Knepley 5380e5e52638SMatthew G. Knepley PetscFunctionBegin; 5381e5e52638SMatthew G. Knepley if (Nds >= NdsNew) PetscFunctionReturn(0); 53829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NdsNew, &tmpd)); 5383e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) tmpd[s] = dm->probs[s]; 53849371c9d4SSatish Balay for (s = Nds; s < NdsNew; ++s) { 53859371c9d4SSatish Balay tmpd[s].ds = NULL; 53869371c9d4SSatish Balay tmpd[s].label = NULL; 53879371c9d4SSatish Balay tmpd[s].fields = NULL; 53889371c9d4SSatish Balay } 53899566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5390e5e52638SMatthew G. Knepley dm->Nds = NdsNew; 5391e5e52638SMatthew G. Knepley dm->probs = tmpd; 5392e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5393e5e52638SMatthew G. Knepley } 5394e5e52638SMatthew G. Knepley 5395e5e52638SMatthew G. Knepley /*@ 5396e5e52638SMatthew G. Knepley DMGetNumDS - Get the number of discrete systems in the DM 5397e5e52638SMatthew G. Knepley 5398e5e52638SMatthew G. Knepley Not collective 5399e5e52638SMatthew G. Knepley 5400e5e52638SMatthew G. Knepley Input Parameter: 5401e5e52638SMatthew G. Knepley . dm - The DM 5402e5e52638SMatthew G. Knepley 5403e5e52638SMatthew G. Knepley Output Parameter: 5404e5e52638SMatthew G. Knepley . Nds - The number of PetscDS objects 5405e5e52638SMatthew G. Knepley 5406e5e52638SMatthew G. Knepley Level: intermediate 5407e5e52638SMatthew G. Knepley 5408db781477SPatrick Sanan .seealso: `DMGetDS()`, `DMGetCellDS()` 5409e5e52638SMatthew G. Knepley @*/ 5410d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumDS(DM dm, PetscInt *Nds) 5411d71ae5a4SJacob Faibussowitsch { 5412e5e52638SMatthew G. Knepley PetscFunctionBegin; 5413e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5414534a8f05SLisandro Dalcin PetscValidIntPointer(Nds, 2); 5415e5e52638SMatthew G. Knepley *Nds = dm->Nds; 5416e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5417e5e52638SMatthew G. Knepley } 5418e5e52638SMatthew G. Knepley 5419e5e52638SMatthew G. Knepley /*@ 5420e5e52638SMatthew G. Knepley DMClearDS - Remove all discrete systems from the DM 5421e5e52638SMatthew G. Knepley 5422d083f849SBarry Smith Logically collective on dm 5423e5e52638SMatthew G. Knepley 5424e5e52638SMatthew G. Knepley Input Parameter: 5425e5e52638SMatthew G. Knepley . dm - The DM 5426e5e52638SMatthew G. Knepley 5427e5e52638SMatthew G. Knepley Level: intermediate 5428e5e52638SMatthew G. Knepley 5429db781477SPatrick Sanan .seealso: `DMGetNumDS()`, `DMGetDS()`, `DMSetField()` 5430e5e52638SMatthew G. Knepley @*/ 5431d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearDS(DM dm) 5432d71ae5a4SJacob Faibussowitsch { 5433e5e52638SMatthew G. Knepley PetscInt s; 5434e5e52638SMatthew G. Knepley 5435e5e52638SMatthew G. Knepley PetscFunctionBegin; 5436e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5437e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 54389566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 54399566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[s].label)); 54409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[s].fields)); 5441e5e52638SMatthew G. Knepley } 54429566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5443e5e52638SMatthew G. Knepley dm->probs = NULL; 5444e5e52638SMatthew G. Knepley dm->Nds = 0; 5445e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5446e5e52638SMatthew G. Knepley } 5447e5e52638SMatthew G. Knepley 5448e5e52638SMatthew G. Knepley /*@ 5449e5e52638SMatthew G. Knepley DMGetDS - Get the default PetscDS 5450e5e52638SMatthew G. Knepley 5451e5e52638SMatthew G. Knepley Not collective 5452e5e52638SMatthew G. Knepley 5453e5e52638SMatthew G. Knepley Input Parameter: 5454e5e52638SMatthew G. Knepley . dm - The DM 5455e5e52638SMatthew G. Knepley 5456e5e52638SMatthew G. Knepley Output Parameter: 5457e5e52638SMatthew G. Knepley . prob - The default PetscDS 5458e5e52638SMatthew G. Knepley 5459e5e52638SMatthew G. Knepley Level: intermediate 5460e5e52638SMatthew G. Knepley 5461db781477SPatrick Sanan .seealso: `DMGetCellDS()`, `DMGetRegionDS()` 5462e5e52638SMatthew G. Knepley @*/ 5463d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDS(DM dm, PetscDS *prob) 5464d71ae5a4SJacob Faibussowitsch { 5465e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5466e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5467e5e52638SMatthew G. Knepley PetscValidPointer(prob, 2); 5468b0143b4dSMatthew G. Knepley if (dm->Nds <= 0) { 5469b0143b4dSMatthew G. Knepley PetscDS ds; 5470b0143b4dSMatthew G. Knepley 54719566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 54729566063dSJacob Faibussowitsch PetscCall(DMSetRegionDS(dm, NULL, NULL, ds)); 54739566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 5474b0143b4dSMatthew G. Knepley } 5475b0143b4dSMatthew G. Knepley *prob = dm->probs[0].ds; 5476e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5477e5e52638SMatthew G. Knepley } 5478e5e52638SMatthew G. Knepley 5479e5e52638SMatthew G. Knepley /*@ 5480e5e52638SMatthew G. Knepley DMGetCellDS - Get the PetscDS defined on a given cell 5481e5e52638SMatthew G. Knepley 5482e5e52638SMatthew G. Knepley Not collective 5483e5e52638SMatthew G. Knepley 5484e5e52638SMatthew G. Knepley Input Parameters: 5485e5e52638SMatthew G. Knepley + dm - The DM 5486e5e52638SMatthew G. Knepley - point - Cell for the DS 5487e5e52638SMatthew G. Knepley 5488e5e52638SMatthew G. Knepley Output Parameter: 5489e5e52638SMatthew G. Knepley . prob - The PetscDS defined on the given cell 5490e5e52638SMatthew G. Knepley 5491e5e52638SMatthew G. Knepley Level: developer 5492e5e52638SMatthew G. Knepley 5493db781477SPatrick Sanan .seealso: `DMGetDS()`, `DMSetRegionDS()` 5494e5e52638SMatthew G. Knepley @*/ 5495d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCellDS(DM dm, PetscInt point, PetscDS *prob) 5496d71ae5a4SJacob Faibussowitsch { 5497e5e52638SMatthew G. Knepley PetscDS probDef = NULL; 5498e5e52638SMatthew G. Knepley PetscInt s; 5499e5e52638SMatthew G. Knepley 5500e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5501e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5502e5e52638SMatthew G. Knepley PetscValidPointer(prob, 3); 550363a3b9bcSJacob Faibussowitsch PetscCheck(point >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Mesh point cannot be negative: %" PetscInt_FMT, point); 5504e5e52638SMatthew G. Knepley *prob = NULL; 5505e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 5506e5e52638SMatthew G. Knepley PetscInt val; 5507e5e52638SMatthew G. Knepley 55089371c9d4SSatish Balay if (!dm->probs[s].label) { 55099371c9d4SSatish Balay probDef = dm->probs[s].ds; 55109371c9d4SSatish Balay } else { 55119566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(dm->probs[s].label, point, &val)); 55129371c9d4SSatish Balay if (val >= 0) { 55139371c9d4SSatish Balay *prob = dm->probs[s].ds; 55149371c9d4SSatish Balay break; 55159371c9d4SSatish Balay } 5516e5e52638SMatthew G. Knepley } 5517e5e52638SMatthew G. Knepley } 5518e5e52638SMatthew G. Knepley if (!*prob) *prob = probDef; 5519e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5520e5e52638SMatthew G. Knepley } 5521e5e52638SMatthew G. Knepley 5522e5e52638SMatthew G. Knepley /*@ 5523e5e52638SMatthew G. Knepley DMGetRegionDS - Get the PetscDS for a given mesh region, defined by a DMLabel 5524e5e52638SMatthew G. Knepley 5525e5e52638SMatthew G. Knepley Not collective 5526e5e52638SMatthew G. Knepley 5527e5e52638SMatthew G. Knepley Input Parameters: 5528e5e52638SMatthew G. Knepley + dm - The DM 5529e5e52638SMatthew G. Knepley - label - The DMLabel defining the mesh region, or NULL for the entire mesh 5530e5e52638SMatthew G. Knepley 5531b3cf3223SMatthew G. Knepley Output Parameters: 5532b3cf3223SMatthew G. Knepley + fields - The IS containing the DM field numbers for the fields in this DS, or NULL 5533b3cf3223SMatthew G. Knepley - prob - The PetscDS defined on the given region, or NULL 5534e5e52638SMatthew G. Knepley 5535154ca461SJed Brown Note: 5536154ca461SJed Brown If a non-NULL label is given, but there is no PetscDS on that specific label, 5537154ca461SJed Brown the PetscDS for the full domain (if present) is returned. Returns with 5538154ca461SJed Brown fields=NULL and prob=NULL if there is no PetscDS for the full domain. 5539e5e52638SMatthew G. Knepley 5540e5e52638SMatthew G. Knepley Level: advanced 5541e5e52638SMatthew G. Knepley 5542db781477SPatrick Sanan .seealso: `DMGetRegionNumDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5543e5e52638SMatthew G. Knepley @*/ 5544d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRegionDS(DM dm, DMLabel label, IS *fields, PetscDS *ds) 5545d71ae5a4SJacob Faibussowitsch { 5546e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5547e5e52638SMatthew G. Knepley 5548e5e52638SMatthew G. Knepley PetscFunctionBegin; 5549e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5550e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 55519371c9d4SSatish Balay if (fields) { 55529371c9d4SSatish Balay PetscValidPointer(fields, 3); 55539371c9d4SSatish Balay *fields = NULL; 55549371c9d4SSatish Balay } 55559371c9d4SSatish Balay if (ds) { 55569371c9d4SSatish Balay PetscValidPointer(ds, 4); 55579371c9d4SSatish Balay *ds = NULL; 55589371c9d4SSatish Balay } 5559e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5560154ca461SJed Brown if (dm->probs[s].label == label || !dm->probs[s].label) { 5561b3cf3223SMatthew G. Knepley if (fields) *fields = dm->probs[s].fields; 5562b3cf3223SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 5563154ca461SJed Brown if (dm->probs[s].label) PetscFunctionReturn(0); 5564b3cf3223SMatthew G. Knepley } 5565e5e52638SMatthew G. Knepley } 55662df9ee95SMatthew G. Knepley PetscFunctionReturn(0); 5567e5e52638SMatthew G. Knepley } 5568e5e52638SMatthew G. Knepley 5569e5e52638SMatthew G. Knepley /*@ 5570bb7acecfSBarry Smith DMSetRegionDS - Set the `PetscDS` for a given mesh region, defined by a `DMLabel` 5571083401c6SMatthew G. Knepley 5572083401c6SMatthew G. Knepley Collective on dm 5573083401c6SMatthew G. Knepley 5574083401c6SMatthew G. Knepley Input Parameters: 5575bb7acecfSBarry Smith + dm - The `DM` 5576bb7acecfSBarry Smith . label - The `DMLabel` defining the mesh region, or NULL for the entire mesh 5577bb7acecfSBarry Smith . fields - The IS containing the `DM` field numbers for the fields in this `PetscDS`, or NULL for all fields 5578bb7acecfSBarry Smith - prob - The `PetscDS` defined on the given region 5579083401c6SMatthew G. Knepley 5580bb7acecfSBarry Smith Note: 5581bb7acecfSBarry Smith If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`. If the `PetscDS` is replaced, 5582083401c6SMatthew G. Knepley the fields argument is ignored. 5583083401c6SMatthew G. Knepley 5584083401c6SMatthew G. Knepley Level: advanced 5585083401c6SMatthew G. Knepley 5586db781477SPatrick Sanan .seealso: `DMGetRegionDS()`, `DMSetRegionNumDS()`, `DMGetDS()`, `DMGetCellDS()` 5587083401c6SMatthew G. Knepley @*/ 5588d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRegionDS(DM dm, DMLabel label, IS fields, PetscDS ds) 5589d71ae5a4SJacob Faibussowitsch { 5590083401c6SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5591083401c6SMatthew G. Knepley 5592083401c6SMatthew G. Knepley PetscFunctionBegin; 5593083401c6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5594083401c6SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 5595064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 4); 5596083401c6SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5597083401c6SMatthew G. Knepley if (dm->probs[s].label == label) { 55989566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 5599083401c6SMatthew G. Knepley dm->probs[s].ds = ds; 5600083401c6SMatthew G. Knepley PetscFunctionReturn(0); 5601083401c6SMatthew G. Knepley } 5602083401c6SMatthew G. Knepley } 56039566063dSJacob Faibussowitsch PetscCall(DMDSEnlarge_Static(dm, Nds + 1)); 56049566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 56059566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 56069566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 5607083401c6SMatthew G. Knepley if (!label) { 5608083401c6SMatthew G. Knepley /* Put the NULL label at the front, so it is returned as the default */ 5609083401c6SMatthew G. Knepley for (s = Nds - 1; s >= 0; --s) dm->probs[s + 1] = dm->probs[s]; 5610083401c6SMatthew G. Knepley Nds = 0; 5611083401c6SMatthew G. Knepley } 5612083401c6SMatthew G. Knepley dm->probs[Nds].label = label; 5613083401c6SMatthew G. Knepley dm->probs[Nds].fields = fields; 5614083401c6SMatthew G. Knepley dm->probs[Nds].ds = ds; 5615083401c6SMatthew G. Knepley PetscFunctionReturn(0); 5616083401c6SMatthew G. Knepley } 5617083401c6SMatthew G. Knepley 5618083401c6SMatthew G. Knepley /*@ 5619e5e52638SMatthew G. Knepley DMGetRegionNumDS - Get the PetscDS for a given mesh region, defined by the region number 5620e5e52638SMatthew G. Knepley 5621e5e52638SMatthew G. Knepley Not collective 5622e5e52638SMatthew G. Knepley 5623e5e52638SMatthew G. Knepley Input Parameters: 5624e5e52638SMatthew G. Knepley + dm - The DM 5625e5e52638SMatthew G. Knepley - num - The region number, in [0, Nds) 5626e5e52638SMatthew G. Knepley 5627e5e52638SMatthew G. Knepley Output Parameters: 5628b3cf3223SMatthew G. Knepley + label - The region label, or NULL 5629b3cf3223SMatthew G. Knepley . fields - The IS containing the DM field numbers for the fields in this DS, or NULL 5630083401c6SMatthew G. Knepley - ds - The PetscDS defined on the given region, or NULL 5631e5e52638SMatthew G. Knepley 5632e5e52638SMatthew G. Knepley Level: advanced 5633e5e52638SMatthew G. Knepley 5634db781477SPatrick Sanan .seealso: `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5635e5e52638SMatthew G. Knepley @*/ 5636d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRegionNumDS(DM dm, PetscInt num, DMLabel *label, IS *fields, PetscDS *ds) 5637d71ae5a4SJacob Faibussowitsch { 5638e5e52638SMatthew G. Knepley PetscInt Nds; 5639e5e52638SMatthew G. Knepley 5640e5e52638SMatthew G. Knepley PetscFunctionBegin; 5641e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 56429566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 564363a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 5644e5e52638SMatthew G. Knepley if (label) { 5645e5e52638SMatthew G. Knepley PetscValidPointer(label, 3); 5646e5e52638SMatthew G. Knepley *label = dm->probs[num].label; 5647e5e52638SMatthew G. Knepley } 5648b3cf3223SMatthew G. Knepley if (fields) { 5649b3cf3223SMatthew G. Knepley PetscValidPointer(fields, 4); 5650b3cf3223SMatthew G. Knepley *fields = dm->probs[num].fields; 5651b3cf3223SMatthew G. Knepley } 5652e5e52638SMatthew G. Knepley if (ds) { 5653b3cf3223SMatthew G. Knepley PetscValidPointer(ds, 5); 5654e5e52638SMatthew G. Knepley *ds = dm->probs[num].ds; 5655e5e52638SMatthew G. Knepley } 5656e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5657e5e52638SMatthew G. Knepley } 5658e5e52638SMatthew G. Knepley 5659e5e52638SMatthew G. Knepley /*@ 5660083401c6SMatthew G. Knepley DMSetRegionNumDS - Set the PetscDS for a given mesh region, defined by the region number 5661e5e52638SMatthew G. Knepley 5662083401c6SMatthew G. Knepley Not collective 5663e5e52638SMatthew G. Knepley 5664e5e52638SMatthew G. Knepley Input Parameters: 5665e5e52638SMatthew G. Knepley + dm - The DM 5666083401c6SMatthew G. Knepley . num - The region number, in [0, Nds) 5667083401c6SMatthew G. Knepley . label - The region label, or NULL 5668083401c6SMatthew G. Knepley . fields - The IS containing the DM field numbers for the fields in this DS, or NULL to prevent setting 5669083401c6SMatthew G. Knepley - ds - The PetscDS defined on the given region, or NULL to prevent setting 5670e5e52638SMatthew G. Knepley 5671e5e52638SMatthew G. Knepley Level: advanced 5672e5e52638SMatthew G. Knepley 5673db781477SPatrick Sanan .seealso: `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5674e5e52638SMatthew G. Knepley @*/ 5675d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRegionNumDS(DM dm, PetscInt num, DMLabel label, IS fields, PetscDS ds) 5676d71ae5a4SJacob Faibussowitsch { 5677083401c6SMatthew G. Knepley PetscInt Nds; 5678e5e52638SMatthew G. Knepley 5679e5e52638SMatthew G. Knepley PetscFunctionBegin; 5680e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5681ad540459SPierre Jolivet if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 56829566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 568363a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 56849566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 56859566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[num].label)); 5686083401c6SMatthew G. Knepley dm->probs[num].label = label; 5687083401c6SMatthew G. Knepley if (fields) { 5688083401c6SMatthew G. Knepley PetscValidHeaderSpecific(fields, IS_CLASSID, 4); 56899566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 56909566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[num].fields)); 5691083401c6SMatthew G. Knepley dm->probs[num].fields = fields; 5692e5e52638SMatthew G. Knepley } 5693083401c6SMatthew G. Knepley if (ds) { 5694083401c6SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 5); 56959566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 56969566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[num].ds)); 5697083401c6SMatthew G. Knepley dm->probs[num].ds = ds; 5698083401c6SMatthew G. Knepley } 5699e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5700e5e52638SMatthew G. Knepley } 5701e5e52638SMatthew G. Knepley 5702e5e52638SMatthew G. Knepley /*@ 57031d3af9e0SMatthew G. Knepley DMFindRegionNum - Find the region number for a given PetscDS, or -1 if it is not found. 57041d3af9e0SMatthew G. Knepley 57051d3af9e0SMatthew G. Knepley Not collective 57061d3af9e0SMatthew G. Knepley 57071d3af9e0SMatthew G. Knepley Input Parameters: 57081d3af9e0SMatthew G. Knepley + dm - The DM 57091d3af9e0SMatthew G. Knepley - ds - The PetscDS defined on the given region 57101d3af9e0SMatthew G. Knepley 57111d3af9e0SMatthew G. Knepley Output Parameter: 57121d3af9e0SMatthew G. Knepley . num - The region number, in [0, Nds), or -1 if not found 57131d3af9e0SMatthew G. Knepley 57141d3af9e0SMatthew G. Knepley Level: advanced 57151d3af9e0SMatthew G. Knepley 5716db781477SPatrick Sanan .seealso: `DMGetRegionNumDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 57171d3af9e0SMatthew G. Knepley @*/ 5718d71ae5a4SJacob Faibussowitsch PetscErrorCode DMFindRegionNum(DM dm, PetscDS ds, PetscInt *num) 5719d71ae5a4SJacob Faibussowitsch { 57201d3af9e0SMatthew G. Knepley PetscInt Nds, n; 57211d3af9e0SMatthew G. Knepley 57221d3af9e0SMatthew G. Knepley PetscFunctionBegin; 57231d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 57241d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 2); 5725dadcf809SJacob Faibussowitsch PetscValidIntPointer(num, 3); 57269566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 57279371c9d4SSatish Balay for (n = 0; n < Nds; ++n) 57289371c9d4SSatish Balay if (ds == dm->probs[n].ds) break; 57291d3af9e0SMatthew G. Knepley if (n >= Nds) *num = -1; 57301d3af9e0SMatthew G. Knepley else *num = n; 57311d3af9e0SMatthew G. Knepley PetscFunctionReturn(0); 57321d3af9e0SMatthew G. Knepley } 57331d3af9e0SMatthew G. Knepley 57342df84da0SMatthew G. Knepley /*@C 5735bb7acecfSBarry Smith DMCreateFEDefault - Create a `PetscFE` based on the celltype for the mesh 57362df84da0SMatthew G. Knepley 57372df84da0SMatthew G. Knepley Not collective 57382df84da0SMatthew G. Knepley 5739f1a722f8SMatthew G. Knepley Input Parameters: 5740bb7acecfSBarry Smith + dm - The `DM` 57412df84da0SMatthew G. Knepley . Nc - The number of components for the field 5742bb7acecfSBarry Smith . prefix - The options prefix for the output `PetscFE`, or NULL 5743bb7acecfSBarry Smith - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree 57442df84da0SMatthew G. Knepley 57452df84da0SMatthew G. Knepley Output Parameter: 5746bb7acecfSBarry Smith . fem - The `PetscFE` 57472df84da0SMatthew G. Knepley 5748bb7acecfSBarry Smith Note: 5749bb7acecfSBarry Smith This is a convenience method that just calls `PetscFECreateByCell()` underneath. 57502df84da0SMatthew G. Knepley 57512df84da0SMatthew G. Knepley Level: intermediate 57522df84da0SMatthew G. Knepley 5753db781477SPatrick Sanan .seealso: `PetscFECreateByCell()`, `DMAddField()`, `DMCreateDS()`, `DMGetCellDS()`, `DMGetRegionDS()` 57542df84da0SMatthew G. Knepley @*/ 5755d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFEDefault(DM dm, PetscInt Nc, const char prefix[], PetscInt qorder, PetscFE *fem) 5756d71ae5a4SJacob Faibussowitsch { 57572df84da0SMatthew G. Knepley DMPolytopeType ct; 57582df84da0SMatthew G. Knepley PetscInt dim, cStart; 57592df84da0SMatthew G. Knepley 57602df84da0SMatthew G. Knepley PetscFunctionBegin; 57612df84da0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 57622df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 2); 57632df84da0SMatthew G. Knepley if (prefix) PetscValidCharPointer(prefix, 3); 57642df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, qorder, 4); 57652df84da0SMatthew G. Knepley PetscValidPointer(fem, 5); 57669566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 57679566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 57689566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 57699566063dSJacob Faibussowitsch PetscCall(PetscFECreateByCell(PETSC_COMM_SELF, dim, Nc, ct, prefix, qorder, fem)); 57702df84da0SMatthew G. Knepley PetscFunctionReturn(0); 57712df84da0SMatthew G. Knepley } 57722df84da0SMatthew G. Knepley 57731d3af9e0SMatthew G. Knepley /*@ 5774bb7acecfSBarry Smith DMCreateDS - Create the discrete systems for the `DM` based upon the fields added to the `DM` 5775e5e52638SMatthew G. Knepley 5776d083f849SBarry Smith Collective on dm 5777e5e52638SMatthew G. Knepley 5778e5e52638SMatthew G. Knepley Input Parameter: 5779bb7acecfSBarry Smith . dm - The `DM` 5780e5e52638SMatthew G. Knepley 578145480ffeSMatthew G. Knepley Options Database Keys: 5782bb7acecfSBarry Smith . -dm_petscds_view - View all the `PetscDS` objects in this `DM` 578345480ffeSMatthew G. Knepley 5784bb7acecfSBarry Smith Note: 5785bb7acecfSBarry Smith If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`. 5786e5e52638SMatthew G. Knepley 5787e5e52638SMatthew G. Knepley Level: intermediate 5788e5e52638SMatthew G. Knepley 5789db781477SPatrick Sanan .seealso: `DMSetField`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 5790e5e52638SMatthew G. Knepley @*/ 5791d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDS(DM dm) 5792d71ae5a4SJacob Faibussowitsch { 5793e5e52638SMatthew G. Knepley MPI_Comm comm; 5794083401c6SMatthew G. Knepley PetscDS dsDef; 5795083401c6SMatthew G. Knepley DMLabel *labelSet; 5796f9244615SMatthew G. Knepley PetscInt dE, Nf = dm->Nf, f, s, Nl, l, Ndef, k; 5797f9244615SMatthew G. Knepley PetscBool doSetup = PETSC_TRUE, flg; 5798e5e52638SMatthew G. Knepley 5799e5e52638SMatthew G. Knepley PetscFunctionBegin; 5800e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5801e5e52638SMatthew G. Knepley if (!dm->fields) PetscFunctionReturn(0); 58029566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 58039566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dE)); 5804083401c6SMatthew G. Knepley /* Determine how many regions we have */ 58059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nf, &labelSet)); 5806083401c6SMatthew G. Knepley Nl = 0; 5807083401c6SMatthew G. Knepley Ndef = 0; 5808083401c6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5809083401c6SMatthew G. Knepley DMLabel label = dm->fields[f].label; 5810083401c6SMatthew G. Knepley PetscInt l; 5811083401c6SMatthew G. Knepley 5812f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 5813f918ec44SMatthew G. Knepley /* Move CEED context to discretizations */ 5814f918ec44SMatthew G. Knepley { 5815f918ec44SMatthew G. Knepley PetscClassId id; 5816f918ec44SMatthew G. Knepley 58179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(dm->fields[f].disc, &id)); 5818f918ec44SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 5819f918ec44SMatthew G. Knepley Ceed ceed; 5820f918ec44SMatthew G. Knepley 58219566063dSJacob Faibussowitsch PetscCall(DMGetCeed(dm, &ceed)); 58229566063dSJacob Faibussowitsch PetscCall(PetscFESetCeed((PetscFE)dm->fields[f].disc, ceed)); 5823f918ec44SMatthew G. Knepley } 5824f918ec44SMatthew G. Knepley } 5825f918ec44SMatthew G. Knepley #endif 58269371c9d4SSatish Balay if (!label) { 58279371c9d4SSatish Balay ++Ndef; 58289371c9d4SSatish Balay continue; 58299371c9d4SSatish Balay } 58309371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 58319371c9d4SSatish Balay if (label == labelSet[l]) break; 5832083401c6SMatthew G. Knepley if (l < Nl) continue; 5833083401c6SMatthew G. Knepley labelSet[Nl++] = label; 5834083401c6SMatthew G. Knepley } 5835083401c6SMatthew G. Knepley /* Create default DS if there are no labels to intersect with */ 58369566063dSJacob Faibussowitsch PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef)); 5837083401c6SMatthew G. Knepley if (!dsDef && Ndef && !Nl) { 5838b3cf3223SMatthew G. Knepley IS fields; 5839b3cf3223SMatthew G. Knepley PetscInt *fld, nf; 5840b3cf3223SMatthew G. Knepley 58419371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 58429371c9d4SSatish Balay if (!dm->fields[f].label) ++nf; 58437a8be351SBarry Smith PetscCheck(nf, comm, PETSC_ERR_PLIB, "All fields have labels, but we are trying to create a default DS"); 58449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 58459371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 58469371c9d4SSatish Balay if (!dm->fields[f].label) fld[nf++] = f; 58479566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 58489566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 58499566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 58509566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 585188f0c812SMatthew G. Knepley 58529566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 58539566063dSJacob Faibussowitsch PetscCall(DMSetRegionDS(dm, NULL, fields, dsDef)); 58549566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 58559566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fields)); 58562df9ee95SMatthew G. Knepley } 58579566063dSJacob Faibussowitsch PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef)); 58589566063dSJacob Faibussowitsch if (dsDef) PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 5859083401c6SMatthew G. Knepley /* Intersect labels with default fields */ 5860083401c6SMatthew G. Knepley if (Ndef && Nl) { 58610122748bSMatthew G. Knepley DM plex; 5862083401c6SMatthew G. Knepley DMLabel cellLabel; 5863083401c6SMatthew G. Knepley IS fieldIS, allcellIS, defcellIS = NULL; 5864083401c6SMatthew G. Knepley PetscInt *fields; 5865083401c6SMatthew G. Knepley const PetscInt *cells; 5866083401c6SMatthew G. Knepley PetscInt depth, nf = 0, n, c; 58670122748bSMatthew G. Knepley 58689566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 58699566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(plex, &depth)); 58709566063dSJacob Faibussowitsch PetscCall(DMGetStratumIS(plex, "dim", depth, &allcellIS)); 58719566063dSJacob Faibussowitsch if (!allcellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &allcellIS)); 58725fedec97SMatthew G. Knepley /* TODO This looks like it only works for one label */ 5873083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 5874083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 5875083401c6SMatthew G. Knepley IS pointIS; 5876083401c6SMatthew G. Knepley 58779566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 58789566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, 1, &pointIS)); 58799566063dSJacob Faibussowitsch PetscCall(ISDifference(allcellIS, pointIS, &defcellIS)); 58809566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 5881083401c6SMatthew G. Knepley } 58829566063dSJacob Faibussowitsch PetscCall(ISDestroy(&allcellIS)); 5883083401c6SMatthew G. Knepley 58849566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "defaultCells", &cellLabel)); 58859566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(defcellIS, &n)); 58869566063dSJacob Faibussowitsch PetscCall(ISGetIndices(defcellIS, &cells)); 58879566063dSJacob Faibussowitsch for (c = 0; c < n; ++c) PetscCall(DMLabelSetValue(cellLabel, cells[c], 1)); 58889566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(defcellIS, &cells)); 58899566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 58909566063dSJacob Faibussowitsch PetscCall(DMPlexLabelComplete(plex, cellLabel)); 5891083401c6SMatthew G. Knepley 58929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ndef, &fields)); 58939371c9d4SSatish Balay for (f = 0; f < Nf; ++f) 58949371c9d4SSatish Balay if (!dm->fields[f].label) fields[nf++] = f; 58959566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fieldIS)); 58969566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fieldIS, "dm_fields_")); 58979566063dSJacob Faibussowitsch PetscCall(ISSetType(fieldIS, ISGENERAL)); 58989566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fieldIS, nf, fields, PETSC_OWN_POINTER)); 5899083401c6SMatthew G. Knepley 59009566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 59019566063dSJacob Faibussowitsch PetscCall(DMSetRegionDS(dm, cellLabel, fieldIS, dsDef)); 59029566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 59039566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&cellLabel)); 59049566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 59059566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fieldIS)); 59069566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 5907083401c6SMatthew G. Knepley } 5908083401c6SMatthew G. Knepley /* Create label DSes 5909083401c6SMatthew G. Knepley - WE ONLY SUPPORT IDENTICAL OR DISJOINT LABELS 5910083401c6SMatthew G. Knepley */ 5911083401c6SMatthew G. Knepley /* TODO Should check that labels are disjoint */ 5912083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 5913083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 5914083401c6SMatthew G. Knepley PetscDS ds; 5915083401c6SMatthew G. Knepley IS fields; 5916083401c6SMatthew G. Knepley PetscInt *fld, nf; 5917083401c6SMatthew G. Knepley 59189566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 59199371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59209371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) ++nf; 59219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 59229371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59239371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) fld[nf++] = f; 59249566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 59259566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 59269566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 59279566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 59289566063dSJacob Faibussowitsch PetscCall(DMSetRegionDS(dm, label, fields, ds)); 59299566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fields)); 59309566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(ds, dE)); 5931083401c6SMatthew G. Knepley { 5932083401c6SMatthew G. Knepley DMPolytopeType ct; 5933083401c6SMatthew G. Knepley PetscInt lStart, lEnd; 59345fedec97SMatthew G. Knepley PetscBool isCohesiveLocal = PETSC_FALSE, isCohesive; 59350122748bSMatthew G. Knepley 59369566063dSJacob Faibussowitsch PetscCall(DMLabelGetBounds(label, &lStart, &lEnd)); 5937665f567fSMatthew G. Knepley if (lStart >= 0) { 59389566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, lStart, &ct)); 5939412e9a14SMatthew G. Knepley switch (ct) { 5940412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 5941412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 5942412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 5943d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_QUAD_PRISM_TENSOR: 5944d71ae5a4SJacob Faibussowitsch isCohesiveLocal = PETSC_TRUE; 5945d71ae5a4SJacob Faibussowitsch break; 5946d71ae5a4SJacob Faibussowitsch default: 5947d71ae5a4SJacob Faibussowitsch break; 5948412e9a14SMatthew G. Knepley } 5949665f567fSMatthew G. Knepley } 59509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(&isCohesiveLocal, &isCohesive, 1, MPIU_BOOL, MPI_LOR, comm)); 59515fedec97SMatthew G. Knepley for (f = 0, nf = 0; f < Nf; ++f) { 59525fedec97SMatthew G. Knepley if (label == dm->fields[f].label || !dm->fields[f].label) { 59535fedec97SMatthew G. Knepley if (label == dm->fields[f].label) { 59549566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, nf, NULL)); 59559566063dSJacob Faibussowitsch PetscCall(PetscDSSetCohesive(ds, nf, isCohesive)); 59565fedec97SMatthew G. Knepley } 59575fedec97SMatthew G. Knepley ++nf; 59585fedec97SMatthew G. Knepley } 59595fedec97SMatthew G. Knepley } 5960e5e52638SMatthew G. Knepley } 59619566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 5962e5e52638SMatthew G. Knepley } 59639566063dSJacob Faibussowitsch PetscCall(PetscFree(labelSet)); 5964e5e52638SMatthew G. Knepley /* Set fields in DSes */ 5965083401c6SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 5966083401c6SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 5967083401c6SMatthew G. Knepley IS fields = dm->probs[s].fields; 5968083401c6SMatthew G. Knepley const PetscInt *fld; 59695fedec97SMatthew G. Knepley PetscInt nf, dsnf; 59705fedec97SMatthew G. Knepley PetscBool isCohesive; 5971e5e52638SMatthew G. Knepley 59729566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsnf)); 59739566063dSJacob Faibussowitsch PetscCall(PetscDSIsCohesive(ds, &isCohesive)); 59749566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(fields, &nf)); 59759566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fields, &fld)); 5976083401c6SMatthew G. Knepley for (f = 0; f < nf; ++f) { 5977083401c6SMatthew G. Knepley PetscObject disc = dm->fields[fld[f]].disc; 59785fedec97SMatthew G. Knepley PetscBool isCohesiveField; 5979e5e52638SMatthew G. Knepley PetscClassId id; 5980e5e52638SMatthew G. Knepley 59815fedec97SMatthew G. Knepley /* Handle DS with no fields */ 59829566063dSJacob Faibussowitsch if (dsnf) PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField)); 59835fedec97SMatthew G. Knepley /* If this is a cohesive cell, then regular fields need the lower dimensional discretization */ 59849566063dSJacob Faibussowitsch if (isCohesive && !isCohesiveField) PetscCall(PetscFEGetHeightSubspace((PetscFE)disc, 1, (PetscFE *)&disc)); 59859566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, f, disc)); 5986083401c6SMatthew G. Knepley /* We allow people to have placeholder fields and construct the Section by hand */ 59879566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 5988e5e52638SMatthew G. Knepley if ((id != PETSCFE_CLASSID) && (id != PETSCFV_CLASSID)) doSetup = PETSC_FALSE; 5989e5e52638SMatthew G. Knepley } 59909566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fields, &fld)); 5991e5e52638SMatthew G. Knepley } 5992f9244615SMatthew G. Knepley /* Allow k-jet tabulation */ 59939566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)dm)->prefix, "-dm_ds_jet_degree", &k, &flg)); 5994f9244615SMatthew G. Knepley if (flg) { 59953b4aee56SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 59963b4aee56SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 59973b4aee56SMatthew G. Knepley PetscInt Nf, f; 59983b4aee56SMatthew G. Knepley 59999566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 60009566063dSJacob Faibussowitsch for (f = 0; f < Nf; ++f) PetscCall(PetscDSSetJetDegree(ds, f, k)); 60013b4aee56SMatthew G. Knepley } 6002f9244615SMatthew G. Knepley } 6003e5e52638SMatthew G. Knepley /* Setup DSes */ 6004e5e52638SMatthew G. Knepley if (doSetup) { 60059566063dSJacob Faibussowitsch for (s = 0; s < dm->Nds; ++s) PetscCall(PetscDSSetUp(dm->probs[s].ds)); 6006e5e52638SMatthew G. Knepley } 6007e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 6008e5e52638SMatthew G. Knepley } 6009e5e52638SMatthew G. Knepley 6010e5e52638SMatthew G. Knepley /*@ 6011bb7acecfSBarry Smith DMComputeExactSolution - Compute the exact solution for a given `DM`, using the `PetscDS` information. 60127f96f943SMatthew G. Knepley 6013bb7acecfSBarry Smith Collective on `DM` 6014f2cacb80SMatthew G. Knepley 60157f96f943SMatthew G. Knepley Input Parameters: 6016bb7acecfSBarry Smith + dm - The `DM` 60177f96f943SMatthew G. Knepley - time - The time 60187f96f943SMatthew G. Knepley 60197f96f943SMatthew G. Knepley Output Parameters: 6020f2cacb80SMatthew G. Knepley + u - The vector will be filled with exact solution values, or NULL 6021f2cacb80SMatthew G. Knepley - u_t - The vector will be filled with the time derivative of exact solution values, or NULL 60227f96f943SMatthew G. Knepley 6023bb7acecfSBarry Smith Note: 6024bb7acecfSBarry Smith The user must call `PetscDSSetExactSolution()` before using this routine 60257f96f943SMatthew G. Knepley 60267f96f943SMatthew G. Knepley Level: developer 60277f96f943SMatthew G. Knepley 6028db781477SPatrick Sanan .seealso: `PetscDSSetExactSolution()` 60297f96f943SMatthew G. Knepley @*/ 6030d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeExactSolution(DM dm, PetscReal time, Vec u, Vec u_t) 6031d71ae5a4SJacob Faibussowitsch { 60327f96f943SMatthew G. Knepley PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 60337f96f943SMatthew G. Knepley void **ectxs; 6034f60fa741SMatthew G. Knepley Vec locu, locu_t; 60357f96f943SMatthew G. Knepley PetscInt Nf, Nds, s; 60367f96f943SMatthew G. Knepley 60377f96f943SMatthew G. Knepley PetscFunctionBegin; 6038f2cacb80SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6039f60fa741SMatthew G. Knepley if (u) { 6040f60fa741SMatthew G. Knepley PetscValidHeaderSpecific(u, VEC_CLASSID, 3); 6041f60fa741SMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &locu)); 6042f60fa741SMatthew G. Knepley PetscCall(VecSet(locu, 0.)); 6043f60fa741SMatthew G. Knepley } 6044f60fa741SMatthew G. Knepley if (u_t) { 6045f60fa741SMatthew G. Knepley PetscValidHeaderSpecific(u_t, VEC_CLASSID, 4); 6046f60fa741SMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &locu_t)); 6047f60fa741SMatthew G. Knepley PetscCall(VecSet(locu_t, 0.)); 6048f60fa741SMatthew G. Knepley } 60499566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 60509566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(Nf, &exacts, Nf, &ectxs)); 60519566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 60527f96f943SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 60537f96f943SMatthew G. Knepley PetscDS ds; 60547f96f943SMatthew G. Knepley DMLabel label; 60557f96f943SMatthew G. Knepley IS fieldIS; 60567f96f943SMatthew G. Knepley const PetscInt *fields, id = 1; 60577f96f943SMatthew G. Knepley PetscInt dsNf, f; 60587f96f943SMatthew G. Knepley 60599566063dSJacob Faibussowitsch PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds)); 60609566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 60619566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fieldIS, &fields)); 60629566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 60639566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6064f2cacb80SMatthew G. Knepley if (u) { 6065f60fa741SMatthew G. Knepley for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolution(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]])); 6066f60fa741SMatthew G. Knepley if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu)); 6067f60fa741SMatthew G. Knepley else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu)); 60687f96f943SMatthew G. Knepley } 6069f2cacb80SMatthew G. Knepley if (u_t) { 60709566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 60719566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6072f60fa741SMatthew G. Knepley for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolutionTimeDerivative(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]])); 6073f60fa741SMatthew G. Knepley if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu_t)); 6074f60fa741SMatthew G. Knepley else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu_t)); 6075f2cacb80SMatthew G. Knepley } 60769566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fieldIS, &fields)); 6077f2cacb80SMatthew G. Knepley } 6078f2cacb80SMatthew G. Knepley if (u) { 60799566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution")); 60809566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u, "exact_")); 6081f2cacb80SMatthew G. Knepley } 6082f2cacb80SMatthew G. Knepley if (u_t) { 60839566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution Time Derivative")); 60849566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u_t, "exact_t_")); 6085f2cacb80SMatthew G. Knepley } 60869566063dSJacob Faibussowitsch PetscCall(PetscFree2(exacts, ectxs)); 6087f60fa741SMatthew G. Knepley if (u) { 6088f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, locu, INSERT_ALL_VALUES, u)); 6089f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, locu, INSERT_ALL_VALUES, u)); 6090f60fa741SMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &locu)); 6091f60fa741SMatthew G. Knepley } 6092f60fa741SMatthew G. Knepley if (u_t) { 6093f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, locu_t, INSERT_ALL_VALUES, u_t)); 6094f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, locu_t, INSERT_ALL_VALUES, u_t)); 6095f60fa741SMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &locu_t)); 6096f60fa741SMatthew G. Knepley } 60977f96f943SMatthew G. Knepley PetscFunctionReturn(0); 60987f96f943SMatthew G. Knepley } 60997f96f943SMatthew G. Knepley 6100d71ae5a4SJacob Faibussowitsch PetscErrorCode DMTransferDS_Internal(DM dm, DMLabel label, IS fields, PetscDS ds) 6101d71ae5a4SJacob Faibussowitsch { 610245480ffeSMatthew G. Knepley PetscDS dsNew; 610345480ffeSMatthew G. Knepley DSBoundary b; 61046a02485aSMatthew G. Knepley PetscInt cdim, Nf, f, d; 61055fedec97SMatthew G. Knepley PetscBool isCohesive; 610645480ffeSMatthew G. Knepley void *ctx; 610745480ffeSMatthew G. Knepley 610845480ffeSMatthew G. Knepley PetscFunctionBegin; 61099566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)ds), &dsNew)); 61109566063dSJacob Faibussowitsch PetscCall(PetscDSCopyConstants(ds, dsNew)); 61119566063dSJacob Faibussowitsch PetscCall(PetscDSCopyExactSolutions(ds, dsNew)); 61129566063dSJacob Faibussowitsch PetscCall(PetscDSSelectDiscretizations(ds, PETSC_DETERMINE, NULL, dsNew)); 61139566063dSJacob Faibussowitsch PetscCall(PetscDSCopyEquations(ds, dsNew)); 61149566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 611545480ffeSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 61169566063dSJacob Faibussowitsch PetscCall(PetscDSGetContext(ds, f, &ctx)); 61179566063dSJacob Faibussowitsch PetscCall(PetscDSSetContext(dsNew, f, ctx)); 61189566063dSJacob Faibussowitsch PetscCall(PetscDSGetCohesive(ds, f, &isCohesive)); 61199566063dSJacob Faibussowitsch PetscCall(PetscDSSetCohesive(dsNew, f, isCohesive)); 61206a02485aSMatthew G. Knepley PetscCall(PetscDSGetJetDegree(ds, f, &d)); 61216a02485aSMatthew G. Knepley PetscCall(PetscDSSetJetDegree(dsNew, f, d)); 612245480ffeSMatthew G. Knepley } 612345480ffeSMatthew G. Knepley if (Nf) { 61249566063dSJacob Faibussowitsch PetscCall(PetscDSGetCoordinateDimension(ds, &cdim)); 61259566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(dsNew, cdim)); 612645480ffeSMatthew G. Knepley } 61279566063dSJacob Faibussowitsch PetscCall(PetscDSCopyBoundary(ds, PETSC_DETERMINE, NULL, dsNew)); 612845480ffeSMatthew G. Knepley for (b = dsNew->boundary; b; b = b->next) { 61299566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, b->lname, &b->label)); 613045480ffeSMatthew G. Knepley /* Do not check if label exists here, since p4est calls this for the reference tree which does not have the labels */ 61317a8be351SBarry Smith //PetscCheck(b->label,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Label %s missing in new DM", name); 613245480ffeSMatthew G. Knepley } 613345480ffeSMatthew G. Knepley 61349566063dSJacob Faibussowitsch PetscCall(DMSetRegionDS(dm, label, fields, dsNew)); 61359566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsNew)); 613645480ffeSMatthew G. Knepley PetscFunctionReturn(0); 613745480ffeSMatthew G. Knepley } 613845480ffeSMatthew G. Knepley 61397f96f943SMatthew G. Knepley /*@ 6140bb7acecfSBarry Smith DMCopyDS - Copy the discrete systems for the `DM` into another `DM` 6141e5e52638SMatthew G. Knepley 6142d083f849SBarry Smith Collective on dm 6143e5e52638SMatthew G. Knepley 6144e5e52638SMatthew G. Knepley Input Parameter: 6145bb7acecfSBarry Smith . dm - The `DM` 6146e5e52638SMatthew G. Knepley 6147e5e52638SMatthew G. Knepley Output Parameter: 6148bb7acecfSBarry Smith . newdm - The `DM` 6149e5e52638SMatthew G. Knepley 6150e5e52638SMatthew G. Knepley Level: advanced 6151e5e52638SMatthew G. Knepley 6152db781477SPatrick Sanan .seealso: `DMCopyFields()`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 6153e5e52638SMatthew G. Knepley @*/ 6154d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDS(DM dm, DM newdm) 6155d71ae5a4SJacob Faibussowitsch { 6156e5e52638SMatthew G. Knepley PetscInt Nds, s; 6157e5e52638SMatthew G. Knepley 6158e5e52638SMatthew G. Knepley PetscFunctionBegin; 6159e5e52638SMatthew G. Knepley if (dm == newdm) PetscFunctionReturn(0); 61609566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 61619566063dSJacob Faibussowitsch PetscCall(DMClearDS(newdm)); 6162e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 6163e5e52638SMatthew G. Knepley DMLabel label; 6164b3cf3223SMatthew G. Knepley IS fields; 616545480ffeSMatthew G. Knepley PetscDS ds, newds; 6166783e2ec8SMatthew G. Knepley PetscInt Nbd, bd; 6167e5e52638SMatthew G. Knepley 61689566063dSJacob Faibussowitsch PetscCall(DMGetRegionNumDS(dm, s, &label, &fields, &ds)); 6169b8025e53SMatthew G. Knepley /* TODO: We need to change all keys from labels in the old DM to labels in the new DM */ 61709566063dSJacob Faibussowitsch PetscCall(DMTransferDS_Internal(newdm, label, fields, ds)); 6171d5b43468SJose E. Roman /* Complete new labels in the new DS */ 61729566063dSJacob Faibussowitsch PetscCall(DMGetRegionDS(newdm, label, NULL, &newds)); 61739566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(newds, &Nbd)); 6174783e2ec8SMatthew G. Knepley for (bd = 0; bd < Nbd; ++bd) { 6175b8025e53SMatthew G. Knepley PetscWeakForm wf; 617645480ffeSMatthew G. Knepley DMLabel label; 6177783e2ec8SMatthew G. Knepley PetscInt field; 6178783e2ec8SMatthew G. Knepley 61799566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(newds, bd, &wf, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 61809566063dSJacob Faibussowitsch PetscCall(PetscWeakFormReplaceLabel(wf, label)); 6181783e2ec8SMatthew G. Knepley } 6182e5e52638SMatthew G. Knepley } 6183799db056SMatthew G. Knepley PetscCall(DMCompleteBCLabels_Internal(newdm)); 6184e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 6185e5e52638SMatthew G. Knepley } 6186e5e52638SMatthew G. Knepley 6187e5e52638SMatthew G. Knepley /*@ 6188bb7acecfSBarry Smith DMCopyDisc - Copy the fields and discrete systems for the `DM` into another `DM` 6189e5e52638SMatthew G. Knepley 6190d083f849SBarry Smith Collective on dm 6191e5e52638SMatthew G. Knepley 6192e5e52638SMatthew G. Knepley Input Parameter: 6193bb7acecfSBarry Smith . dm - The `DM` 6194e5e52638SMatthew G. Knepley 6195e5e52638SMatthew G. Knepley Output Parameter: 6196bb7acecfSBarry Smith . newdm - The `DM` 6197e5e52638SMatthew G. Knepley 6198e5e52638SMatthew G. Knepley Level: advanced 6199e5e52638SMatthew G. Knepley 6200bb7acecfSBarry Smith Developer Note: 6201bb7acecfSBarry Smith Really ugly name, nothing in PETSc is called a `Disc` plus it is an ugly abbreviation 6202bb7acecfSBarry Smith 6203db781477SPatrick Sanan .seealso: `DMCopyFields()`, `DMCopyDS()` 6204e5e52638SMatthew G. Knepley @*/ 6205d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDisc(DM dm, DM newdm) 6206d71ae5a4SJacob Faibussowitsch { 6207e5e52638SMatthew G. Knepley PetscFunctionBegin; 62089566063dSJacob Faibussowitsch PetscCall(DMCopyFields(dm, newdm)); 62099566063dSJacob Faibussowitsch PetscCall(DMCopyDS(dm, newdm)); 6210e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 6211e5e52638SMatthew G. Knepley } 6212e5e52638SMatthew G. Knepley 6213c73cfb54SMatthew G. Knepley /*@ 6214bb7acecfSBarry Smith DMGetDimension - Return the topological dimension of the `DM` 6215c73cfb54SMatthew G. Knepley 6216c73cfb54SMatthew G. Knepley Not collective 6217c73cfb54SMatthew G. Knepley 6218c73cfb54SMatthew G. Knepley Input Parameter: 6219bb7acecfSBarry Smith . dm - The `DM` 6220c73cfb54SMatthew G. Knepley 6221c73cfb54SMatthew G. Knepley Output Parameter: 6222c73cfb54SMatthew G. Knepley . dim - The topological dimension 6223c73cfb54SMatthew G. Knepley 6224c73cfb54SMatthew G. Knepley Level: beginner 6225c73cfb54SMatthew G. Knepley 6226db781477SPatrick Sanan .seealso: `DMSetDimension()`, `DMCreate()` 6227c73cfb54SMatthew G. Knepley @*/ 6228d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimension(DM dm, PetscInt *dim) 6229d71ae5a4SJacob Faibussowitsch { 6230c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6231c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6232534a8f05SLisandro Dalcin PetscValidIntPointer(dim, 2); 6233c73cfb54SMatthew G. Knepley *dim = dm->dim; 6234c73cfb54SMatthew G. Knepley PetscFunctionReturn(0); 6235c73cfb54SMatthew G. Knepley } 6236c73cfb54SMatthew G. Knepley 6237c73cfb54SMatthew G. Knepley /*@ 6238bb7acecfSBarry Smith DMSetDimension - Set the topological dimension of the `DM` 6239c73cfb54SMatthew G. Knepley 6240c73cfb54SMatthew G. Knepley Collective on dm 6241c73cfb54SMatthew G. Knepley 6242c73cfb54SMatthew G. Knepley Input Parameters: 6243bb7acecfSBarry Smith + dm - The `DM` 6244c73cfb54SMatthew G. Knepley - dim - The topological dimension 6245c73cfb54SMatthew G. Knepley 6246c73cfb54SMatthew G. Knepley Level: beginner 6247c73cfb54SMatthew G. Knepley 6248db781477SPatrick Sanan .seealso: `DMGetDimension()`, `DMCreate()` 6249c73cfb54SMatthew G. Knepley @*/ 6250d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDimension(DM dm, PetscInt dim) 6251d71ae5a4SJacob Faibussowitsch { 6252e5e52638SMatthew G. Knepley PetscDS ds; 625345480ffeSMatthew G. Knepley PetscInt Nds, n; 6254f17e8794SMatthew G. Knepley 6255c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6256c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6257c73cfb54SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, dim, 2); 6258c73cfb54SMatthew G. Knepley dm->dim = dim; 6259d17bd122SMatthew G. Knepley if (dm->dim >= 0) { 62609566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 626145480ffeSMatthew G. Knepley for (n = 0; n < Nds; ++n) { 62629566063dSJacob Faibussowitsch PetscCall(DMGetRegionNumDS(dm, n, NULL, NULL, &ds)); 62639566063dSJacob Faibussowitsch if (ds->dimEmbed < 0) PetscCall(PetscDSSetCoordinateDimension(ds, dim)); 626445480ffeSMatthew G. Knepley } 6265d17bd122SMatthew G. Knepley } 6266c73cfb54SMatthew G. Knepley PetscFunctionReturn(0); 6267c73cfb54SMatthew G. Knepley } 6268c73cfb54SMatthew G. Knepley 6269793f3fe5SMatthew G. Knepley /*@ 6270793f3fe5SMatthew G. Knepley DMGetDimPoints - Get the half-open interval for all points of a given dimension 6271793f3fe5SMatthew G. Knepley 6272d083f849SBarry Smith Collective on dm 6273793f3fe5SMatthew G. Knepley 6274793f3fe5SMatthew G. Knepley Input Parameters: 6275bb7acecfSBarry Smith + dm - the `DM` 6276793f3fe5SMatthew G. Knepley - dim - the dimension 6277793f3fe5SMatthew G. Knepley 6278793f3fe5SMatthew G. Knepley Output Parameters: 6279793f3fe5SMatthew G. Knepley + pStart - The first point of the given dimension 6280aa049354SPatrick Sanan - pEnd - The first point following points of the given dimension 6281793f3fe5SMatthew G. Knepley 6282793f3fe5SMatthew G. Knepley Note: 6283793f3fe5SMatthew G. Knepley The points are vertices in the Hasse diagram encoding the topology. This is explained in 6284a8d69d7bSBarry Smith https://arxiv.org/abs/0908.4427. If no points exist of this dimension in the storage scheme, 6285793f3fe5SMatthew G. Knepley then the interval is empty. 6286793f3fe5SMatthew G. Knepley 6287793f3fe5SMatthew G. Knepley Level: intermediate 6288793f3fe5SMatthew G. Knepley 6289db781477SPatrick Sanan .seealso: `DMPLEX`, `DMPlexGetDepthStratum()`, `DMPlexGetHeightStratum()` 6290793f3fe5SMatthew G. Knepley @*/ 6291d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimPoints(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd) 6292d71ae5a4SJacob Faibussowitsch { 6293793f3fe5SMatthew G. Knepley PetscInt d; 6294793f3fe5SMatthew G. Knepley 6295793f3fe5SMatthew G. Knepley PetscFunctionBegin; 6296793f3fe5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 62979566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &d)); 62987a8be351SBarry Smith PetscCheck((dim >= 0) && (dim <= d), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %" PetscInt_FMT, dim); 6299dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getdimpoints, dim, pStart, pEnd); 6300793f3fe5SMatthew G. Knepley PetscFunctionReturn(0); 6301793f3fe5SMatthew G. Knepley } 6302793f3fe5SMatthew G. Knepley 63036636e97aSMatthew G Knepley /*@ 6304bb7acecfSBarry Smith DMGetOutputDM - Retrieve the `DM` associated with the layout for output 6305f4d763aaSMatthew G. Knepley 63068f700142SStefano Zampini Collective on dm 63078f700142SStefano Zampini 6308f4d763aaSMatthew G. Knepley Input Parameter: 6309bb7acecfSBarry Smith . dm - The original `DM` 6310f4d763aaSMatthew G. Knepley 6311f4d763aaSMatthew G. Knepley Output Parameter: 6312bb7acecfSBarry Smith . odm - The `DM` which provides the layout for output 6313f4d763aaSMatthew G. Knepley 6314f4d763aaSMatthew G. Knepley Level: intermediate 6315f4d763aaSMatthew G. Knepley 6316bb7acecfSBarry Smith Note: 6317bb7acecfSBarry Smith In some situations the vector obtained with `DMCreateGlobalVector()` excludes points for degrees of freedom that are associated with fixed (Dirichelet) boundary 6318bb7acecfSBarry Smith conditions since the algebraic solver does not solve for those variables. The output `DM` includes these excluded points and its global vector contains the 6319bb7acecfSBarry Smith locations for those dof so that they can be output to a file or other viewer along with the unconstrained dof. 6320bb7acecfSBarry Smith 6321bb7acecfSBarry Smith .seealso: `VecView()`, `DMGetGlobalSection()`, `DMCreateGlobalVector()`, `PetscSectionHasConstraints()`, `DMSetGlobalSection()` 6322f4d763aaSMatthew G. Knepley @*/ 6323d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputDM(DM dm, DM *odm) 6324d71ae5a4SJacob Faibussowitsch { 6325c26acbdeSMatthew G. Knepley PetscSection section; 63262d4e4a49SMatthew G. Knepley PetscBool hasConstraints, ghasConstraints; 632714f150ffSMatthew G. Knepley 632814f150ffSMatthew G. Knepley PetscFunctionBegin; 632914f150ffSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 633014f150ffSMatthew G. Knepley PetscValidPointer(odm, 2); 63319566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 63329566063dSJacob Faibussowitsch PetscCall(PetscSectionHasConstraints(section, &hasConstraints)); 63339566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(&hasConstraints, &ghasConstraints, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm))); 63342d4e4a49SMatthew G. Knepley if (!ghasConstraints) { 6335c26acbdeSMatthew G. Knepley *odm = dm; 6336c26acbdeSMatthew G. Knepley PetscFunctionReturn(0); 6337c26acbdeSMatthew G. Knepley } 633814f150ffSMatthew G. Knepley if (!dm->dmBC) { 6339c26acbdeSMatthew G. Knepley PetscSection newSection, gsection; 634014f150ffSMatthew G. Knepley PetscSF sf; 634114f150ffSMatthew G. Knepley 63429566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->dmBC)); 63439566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, dm->dmBC)); 63449566063dSJacob Faibussowitsch PetscCall(PetscSectionClone(section, &newSection)); 63459566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm->dmBC, newSection)); 63469566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newSection)); 63479566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm->dmBC, &sf)); 63489566063dSJacob Faibussowitsch PetscCall(PetscSectionCreateGlobalSection(section, sf, PETSC_TRUE, PETSC_FALSE, &gsection)); 63499566063dSJacob Faibussowitsch PetscCall(DMSetGlobalSection(dm->dmBC, gsection)); 63509566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&gsection)); 635114f150ffSMatthew G. Knepley } 635214f150ffSMatthew G. Knepley *odm = dm->dmBC; 635314f150ffSMatthew G. Knepley PetscFunctionReturn(0); 635414f150ffSMatthew G. Knepley } 6355f4d763aaSMatthew G. Knepley 6356f4d763aaSMatthew G. Knepley /*@ 6357cdb7a50dSMatthew G. Knepley DMGetOutputSequenceNumber - Retrieve the sequence number/value for output 6358f4d763aaSMatthew G. Knepley 6359f4d763aaSMatthew G. Knepley Input Parameter: 6360bb7acecfSBarry Smith . dm - The original `DM` 6361f4d763aaSMatthew G. Knepley 6362cdb7a50dSMatthew G. Knepley Output Parameters: 6363cdb7a50dSMatthew G. Knepley + num - The output sequence number 6364cdb7a50dSMatthew G. Knepley - val - The output sequence value 6365f4d763aaSMatthew G. Knepley 6366f4d763aaSMatthew G. Knepley Level: intermediate 6367f4d763aaSMatthew G. Knepley 6368bb7acecfSBarry Smith Note: 6369bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6370bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6371bb7acecfSBarry Smith 6372bb7acecfSBarry Smith Developer Note: 6373bb7acecfSBarry Smith The `DM` serves as a convenient place to store the current iteration value. The iteration is not 6374bb7acecfSBarry Smith not directly related to the `DM`. 6375f4d763aaSMatthew G. Knepley 6376db781477SPatrick Sanan .seealso: `VecView()` 6377f4d763aaSMatthew G. Knepley @*/ 6378d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputSequenceNumber(DM dm, PetscInt *num, PetscReal *val) 6379d71ae5a4SJacob Faibussowitsch { 6380f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6381f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 63829371c9d4SSatish Balay if (num) { 63839371c9d4SSatish Balay PetscValidIntPointer(num, 2); 63849371c9d4SSatish Balay *num = dm->outputSequenceNum; 63859371c9d4SSatish Balay } 63869371c9d4SSatish Balay if (val) { 63879371c9d4SSatish Balay PetscValidRealPointer(val, 3); 63889371c9d4SSatish Balay *val = dm->outputSequenceVal; 63899371c9d4SSatish Balay } 6390f4d763aaSMatthew G. Knepley PetscFunctionReturn(0); 6391f4d763aaSMatthew G. Knepley } 6392f4d763aaSMatthew G. Knepley 6393f4d763aaSMatthew G. Knepley /*@ 6394cdb7a50dSMatthew G. Knepley DMSetOutputSequenceNumber - Set the sequence number/value for output 6395f4d763aaSMatthew G. Knepley 6396f4d763aaSMatthew G. Knepley Input Parameters: 6397bb7acecfSBarry Smith + dm - The original `DM` 6398cdb7a50dSMatthew G. Knepley . num - The output sequence number 6399cdb7a50dSMatthew G. Knepley - val - The output sequence value 6400f4d763aaSMatthew G. Knepley 6401f4d763aaSMatthew G. Knepley Level: intermediate 6402f4d763aaSMatthew G. Knepley 6403bb7acecfSBarry Smith Note: 6404bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6405bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6406f4d763aaSMatthew G. Knepley 6407db781477SPatrick Sanan .seealso: `VecView()` 6408f4d763aaSMatthew G. Knepley @*/ 6409d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOutputSequenceNumber(DM dm, PetscInt num, PetscReal val) 6410d71ae5a4SJacob Faibussowitsch { 6411f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6412f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6413f4d763aaSMatthew G. Knepley dm->outputSequenceNum = num; 6414cdb7a50dSMatthew G. Knepley dm->outputSequenceVal = val; 6415cdb7a50dSMatthew G. Knepley PetscFunctionReturn(0); 6416cdb7a50dSMatthew G. Knepley } 6417cdb7a50dSMatthew G. Knepley 6418cdb7a50dSMatthew G. Knepley /*@C 6419bb7acecfSBarry Smith DMOutputSequenceLoad - Retrieve the sequence value from a `PetscViewer` 6420cdb7a50dSMatthew G. Knepley 6421cdb7a50dSMatthew G. Knepley Input Parameters: 6422bb7acecfSBarry Smith + dm - The original `DM` 6423cdb7a50dSMatthew G. Knepley . name - The sequence name 6424cdb7a50dSMatthew G. Knepley - num - The output sequence number 6425cdb7a50dSMatthew G. Knepley 6426cdb7a50dSMatthew G. Knepley Output Parameter: 6427cdb7a50dSMatthew G. Knepley . val - The output sequence value 6428cdb7a50dSMatthew G. Knepley 6429cdb7a50dSMatthew G. Knepley Level: intermediate 6430cdb7a50dSMatthew G. Knepley 6431bb7acecfSBarry Smith Note: 6432bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6433bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6434bb7acecfSBarry Smith 6435bb7acecfSBarry Smith Developer Note: 6436bb7acecfSBarry Smith It is unclear at the user API level why a `DM` is needed as input 6437cdb7a50dSMatthew G. Knepley 6438db781477SPatrick Sanan .seealso: `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()` 6439cdb7a50dSMatthew G. Knepley @*/ 6440d71ae5a4SJacob Faibussowitsch PetscErrorCode DMOutputSequenceLoad(DM dm, PetscViewer viewer, const char *name, PetscInt num, PetscReal *val) 6441d71ae5a4SJacob Faibussowitsch { 6442cdb7a50dSMatthew G. Knepley PetscBool ishdf5; 6443cdb7a50dSMatthew G. Knepley 6444cdb7a50dSMatthew G. Knepley PetscFunctionBegin; 6445cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6446cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 6447064a246eSJacob Faibussowitsch PetscValidRealPointer(val, 5); 64489566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 6449cdb7a50dSMatthew G. Knepley if (ishdf5) { 6450cdb7a50dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 6451cdb7a50dSMatthew G. Knepley PetscScalar value; 6452cdb7a50dSMatthew G. Knepley 64539566063dSJacob Faibussowitsch PetscCall(DMSequenceLoad_HDF5_Internal(dm, name, num, &value, viewer)); 64544aeb217fSMatthew G. Knepley *val = PetscRealPart(value); 6455cdb7a50dSMatthew G. Knepley #endif 6456cdb7a50dSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()"); 6457f4d763aaSMatthew G. Knepley PetscFunctionReturn(0); 6458f4d763aaSMatthew G. Knepley } 64598e4ac7eaSMatthew G. Knepley 64608e4ac7eaSMatthew G. Knepley /*@ 6461bb7acecfSBarry Smith DMGetUseNatural - Get the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 64628e4ac7eaSMatthew G. Knepley 64638e4ac7eaSMatthew G. Knepley Not collective 64648e4ac7eaSMatthew G. Knepley 64658e4ac7eaSMatthew G. Knepley Input Parameter: 6466bb7acecfSBarry Smith . dm - The `DM` 64678e4ac7eaSMatthew G. Knepley 64688e4ac7eaSMatthew G. Knepley Output Parameter: 6469bb7acecfSBarry Smith . useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 64708e4ac7eaSMatthew G. Knepley 64718e4ac7eaSMatthew G. Knepley Level: beginner 64728e4ac7eaSMatthew G. Knepley 6473db781477SPatrick Sanan .seealso: `DMSetUseNatural()`, `DMCreate()` 64748e4ac7eaSMatthew G. Knepley @*/ 6475d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetUseNatural(DM dm, PetscBool *useNatural) 6476d71ae5a4SJacob Faibussowitsch { 64778e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 64788e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6479534a8f05SLisandro Dalcin PetscValidBoolPointer(useNatural, 2); 64808e4ac7eaSMatthew G. Knepley *useNatural = dm->useNatural; 64818e4ac7eaSMatthew G. Knepley PetscFunctionReturn(0); 64828e4ac7eaSMatthew G. Knepley } 64838e4ac7eaSMatthew G. Knepley 64848e4ac7eaSMatthew G. Knepley /*@ 6485bb7acecfSBarry Smith DMSetUseNatural - Set the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 64868e4ac7eaSMatthew G. Knepley 64878e4ac7eaSMatthew G. Knepley Collective on dm 64888e4ac7eaSMatthew G. Knepley 64898e4ac7eaSMatthew G. Knepley Input Parameters: 6490bb7acecfSBarry Smith + dm - The `DM` 6491bb7acecfSBarry Smith - useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 64928e4ac7eaSMatthew G. Knepley 6493bb7acecfSBarry Smith Note: 6494bb7acecfSBarry Smith This also causes the map to be build after `DMCreateSubDM()` and `DMCreateSuperDM()` 64955d3b26e6SMatthew G. Knepley 64968e4ac7eaSMatthew G. Knepley Level: beginner 64978e4ac7eaSMatthew G. Knepley 6498db781477SPatrick Sanan .seealso: `DMGetUseNatural()`, `DMCreate()`, `DMPlexDistribute()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 64998e4ac7eaSMatthew G. Knepley @*/ 6500d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUseNatural(DM dm, PetscBool useNatural) 6501d71ae5a4SJacob Faibussowitsch { 65028e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 65038e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 65048833efb5SBlaise Bourdin PetscValidLogicalCollectiveBool(dm, useNatural, 2); 65058e4ac7eaSMatthew G. Knepley dm->useNatural = useNatural; 65068e4ac7eaSMatthew G. Knepley PetscFunctionReturn(0); 65078e4ac7eaSMatthew G. Knepley } 6508c58f1c22SToby Isaac 6509c58f1c22SToby Isaac /*@C 6510bb7acecfSBarry Smith DMCreateLabel - Create a label of the given name if it does not already exist in the `DM` 6511c58f1c22SToby Isaac 6512c58f1c22SToby Isaac Not Collective 6513c58f1c22SToby Isaac 6514c58f1c22SToby Isaac Input Parameters: 6515bb7acecfSBarry Smith + dm - The `DM` object 6516c58f1c22SToby Isaac - name - The label name 6517c58f1c22SToby Isaac 6518c58f1c22SToby Isaac Level: intermediate 6519c58f1c22SToby Isaac 6520db781477SPatrick Sanan .seealso: `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6521c58f1c22SToby Isaac @*/ 6522d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabel(DM dm, const char name[]) 6523d71ae5a4SJacob Faibussowitsch { 65245d80c0bfSVaclav Hapla PetscBool flg; 65255d80c0bfSVaclav Hapla DMLabel label; 6526c58f1c22SToby Isaac 6527c58f1c22SToby Isaac PetscFunctionBegin; 6528c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6529c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 65309566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 6531c58f1c22SToby Isaac if (!flg) { 65329566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 65339566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 65349566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 6535c58f1c22SToby Isaac } 6536c58f1c22SToby Isaac PetscFunctionReturn(0); 6537c58f1c22SToby Isaac } 6538c58f1c22SToby Isaac 6539c58f1c22SToby Isaac /*@C 6540bb7acecfSBarry Smith DMCreateLabelAtIndex - Create a label of the given name at the given index. If it already exists in the `DM`, move it to this index. 65410fdc7489SMatthew Knepley 65420fdc7489SMatthew Knepley Not Collective 65430fdc7489SMatthew Knepley 65440fdc7489SMatthew Knepley Input Parameters: 6545bb7acecfSBarry Smith + dm - The `DM` object 65460fdc7489SMatthew Knepley . l - The index for the label 65470fdc7489SMatthew Knepley - name - The label name 65480fdc7489SMatthew Knepley 65490fdc7489SMatthew Knepley Level: intermediate 65500fdc7489SMatthew Knepley 6551db781477SPatrick Sanan .seealso: `DMCreateLabel()`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 65520fdc7489SMatthew Knepley @*/ 6553d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabelAtIndex(DM dm, PetscInt l, const char name[]) 6554d71ae5a4SJacob Faibussowitsch { 65550fdc7489SMatthew Knepley DMLabelLink orig, prev = NULL; 65560fdc7489SMatthew Knepley DMLabel label; 65570fdc7489SMatthew Knepley PetscInt Nl, m; 65580fdc7489SMatthew Knepley PetscBool flg, match; 65590fdc7489SMatthew Knepley const char *lname; 65600fdc7489SMatthew Knepley 65610fdc7489SMatthew Knepley PetscFunctionBegin; 65620fdc7489SMatthew Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6563064a246eSJacob Faibussowitsch PetscValidCharPointer(name, 3); 65649566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 65650fdc7489SMatthew Knepley if (!flg) { 65669566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 65679566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 65689566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 65690fdc7489SMatthew Knepley } 65709566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 657163a3b9bcSJacob Faibussowitsch PetscCheck(l < Nl, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label index %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", l, Nl); 65720fdc7489SMatthew Knepley for (m = 0, orig = dm->labels; m < Nl; ++m, prev = orig, orig = orig->next) { 65739566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)orig->label, &lname)); 65749566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &match)); 65750fdc7489SMatthew Knepley if (match) break; 65760fdc7489SMatthew Knepley } 65770fdc7489SMatthew Knepley if (m == l) PetscFunctionReturn(0); 65780fdc7489SMatthew Knepley if (!m) dm->labels = orig->next; 65790fdc7489SMatthew Knepley else prev->next = orig->next; 65800fdc7489SMatthew Knepley if (!l) { 65810fdc7489SMatthew Knepley orig->next = dm->labels; 65820fdc7489SMatthew Knepley dm->labels = orig; 65830fdc7489SMatthew Knepley } else { 65849371c9d4SSatish Balay for (m = 0, prev = dm->labels; m < l - 1; ++m, prev = prev->next) 65859371c9d4SSatish Balay ; 65860fdc7489SMatthew Knepley orig->next = prev->next; 65870fdc7489SMatthew Knepley prev->next = orig; 65880fdc7489SMatthew Knepley } 65890fdc7489SMatthew Knepley PetscFunctionReturn(0); 65900fdc7489SMatthew Knepley } 65910fdc7489SMatthew Knepley 65920fdc7489SMatthew Knepley /*@C 6593bb7acecfSBarry Smith DMGetLabelValue - Get the value in a `DMLabel` for the given point, with -1 as the default 6594c58f1c22SToby Isaac 6595c58f1c22SToby Isaac Not Collective 6596c58f1c22SToby Isaac 6597c58f1c22SToby Isaac Input Parameters: 6598bb7acecfSBarry Smith + dm - The `DM` object 6599c58f1c22SToby Isaac . name - The label name 6600c58f1c22SToby Isaac - point - The mesh point 6601c58f1c22SToby Isaac 6602c58f1c22SToby Isaac Output Parameter: 6603c58f1c22SToby Isaac . value - The label value for this point, or -1 if the point is not in the label 6604c58f1c22SToby Isaac 6605c58f1c22SToby Isaac Level: beginner 6606c58f1c22SToby Isaac 6607db781477SPatrick Sanan .seealso: `DMLabelGetValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6608c58f1c22SToby Isaac @*/ 6609d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelValue(DM dm, const char name[], PetscInt point, PetscInt *value) 6610d71ae5a4SJacob Faibussowitsch { 6611c58f1c22SToby Isaac DMLabel label; 6612c58f1c22SToby Isaac 6613c58f1c22SToby Isaac PetscFunctionBegin; 6614c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6615c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 66169566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 66177a8be351SBarry Smith PetscCheck(label, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No label named %s was found", name); 66189566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, value)); 6619c58f1c22SToby Isaac PetscFunctionReturn(0); 6620c58f1c22SToby Isaac } 6621c58f1c22SToby Isaac 6622c58f1c22SToby Isaac /*@C 6623bb7acecfSBarry Smith DMSetLabelValue - Add a point to a `DMLabel` with given value 6624c58f1c22SToby Isaac 6625c58f1c22SToby Isaac Not Collective 6626c58f1c22SToby Isaac 6627c58f1c22SToby Isaac Input Parameters: 6628bb7acecfSBarry Smith + dm - The `DM` object 6629c58f1c22SToby Isaac . name - The label name 6630c58f1c22SToby Isaac . point - The mesh point 6631c58f1c22SToby Isaac - value - The label value for this point 6632c58f1c22SToby Isaac 6633c58f1c22SToby Isaac Output Parameter: 6634c58f1c22SToby Isaac 6635c58f1c22SToby Isaac Level: beginner 6636c58f1c22SToby Isaac 6637db781477SPatrick Sanan .seealso: `DMLabelSetValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 6638c58f1c22SToby Isaac @*/ 6639d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6640d71ae5a4SJacob Faibussowitsch { 6641c58f1c22SToby Isaac DMLabel label; 6642c58f1c22SToby Isaac 6643c58f1c22SToby Isaac PetscFunctionBegin; 6644c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6645c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 66469566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6647c58f1c22SToby Isaac if (!label) { 66489566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 66499566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6650c58f1c22SToby Isaac } 66519566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, value)); 6652c58f1c22SToby Isaac PetscFunctionReturn(0); 6653c58f1c22SToby Isaac } 6654c58f1c22SToby Isaac 6655c58f1c22SToby Isaac /*@C 6656bb7acecfSBarry Smith DMClearLabelValue - Remove a point from a `DMLabel` with given value 6657c58f1c22SToby Isaac 6658c58f1c22SToby Isaac Not Collective 6659c58f1c22SToby Isaac 6660c58f1c22SToby Isaac Input Parameters: 6661bb7acecfSBarry Smith + dm - The `DM` object 6662c58f1c22SToby Isaac . name - The label name 6663c58f1c22SToby Isaac . point - The mesh point 6664c58f1c22SToby Isaac - value - The label value for this point 6665c58f1c22SToby Isaac 6666c58f1c22SToby Isaac Level: beginner 6667c58f1c22SToby Isaac 6668db781477SPatrick Sanan .seealso: `DMLabelClearValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6669c58f1c22SToby Isaac @*/ 6670d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6671d71ae5a4SJacob Faibussowitsch { 6672c58f1c22SToby Isaac DMLabel label; 6673c58f1c22SToby Isaac 6674c58f1c22SToby Isaac PetscFunctionBegin; 6675c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6676c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 66779566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6678c58f1c22SToby Isaac if (!label) PetscFunctionReturn(0); 66799566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, value)); 6680c58f1c22SToby Isaac PetscFunctionReturn(0); 6681c58f1c22SToby Isaac } 6682c58f1c22SToby Isaac 6683c58f1c22SToby Isaac /*@C 6684bb7acecfSBarry Smith DMGetLabelSize - Get the value of `DMLabelGetNumValues()` of a `DMLabel` in the `DM` 6685c58f1c22SToby Isaac 6686c58f1c22SToby Isaac Not Collective 6687c58f1c22SToby Isaac 6688c58f1c22SToby Isaac Input Parameters: 6689bb7acecfSBarry Smith + dm - The `DM` object 6690c58f1c22SToby Isaac - name - The label name 6691c58f1c22SToby Isaac 6692c58f1c22SToby Isaac Output Parameter: 6693c58f1c22SToby Isaac . size - The number of different integer ids, or 0 if the label does not exist 6694c58f1c22SToby Isaac 6695c58f1c22SToby Isaac Level: beginner 6696c58f1c22SToby Isaac 6697bb7acecfSBarry Smith Developer Note: 6698bb7acecfSBarry Smith This should be renamed to something like `DMGetLabelNumValues()` or removed. 6699bb7acecfSBarry Smith 6700bb7acecfSBarry Smith .seealso: `DMLabelGetNumValues()`, `DMSetLabelValue()`, `DMGetLabel()` 6701c58f1c22SToby Isaac @*/ 6702d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelSize(DM dm, const char name[], PetscInt *size) 6703d71ae5a4SJacob Faibussowitsch { 6704c58f1c22SToby Isaac DMLabel label; 6705c58f1c22SToby Isaac 6706c58f1c22SToby Isaac PetscFunctionBegin; 6707c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6708c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 6709534a8f05SLisandro Dalcin PetscValidIntPointer(size, 3); 67109566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6711c58f1c22SToby Isaac *size = 0; 6712c58f1c22SToby Isaac if (!label) PetscFunctionReturn(0); 67139566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, size)); 6714c58f1c22SToby Isaac PetscFunctionReturn(0); 6715c58f1c22SToby Isaac } 6716c58f1c22SToby Isaac 6717c58f1c22SToby Isaac /*@C 6718bb7acecfSBarry Smith DMGetLabelIdIS - Get the `DMLabelGetValueIS()` from a `DMLabel` in the `DM` 6719c58f1c22SToby Isaac 6720c58f1c22SToby Isaac Not Collective 6721c58f1c22SToby Isaac 6722c58f1c22SToby Isaac Input Parameters: 6723bb7acecfSBarry Smith + mesh - The `DM` object 6724c58f1c22SToby Isaac - name - The label name 6725c58f1c22SToby Isaac 6726c58f1c22SToby Isaac Output Parameter: 6727c58f1c22SToby Isaac . ids - The integer ids, or NULL if the label does not exist 6728c58f1c22SToby Isaac 6729c58f1c22SToby Isaac Level: beginner 6730c58f1c22SToby Isaac 6731db781477SPatrick Sanan .seealso: `DMLabelGetValueIS()`, `DMGetLabelSize()` 6732c58f1c22SToby Isaac @*/ 6733d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelIdIS(DM dm, const char name[], IS *ids) 6734d71ae5a4SJacob Faibussowitsch { 6735c58f1c22SToby Isaac DMLabel label; 6736c58f1c22SToby Isaac 6737c58f1c22SToby Isaac PetscFunctionBegin; 6738c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6739c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 6740c58f1c22SToby Isaac PetscValidPointer(ids, 3); 67419566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6742c58f1c22SToby Isaac *ids = NULL; 6743dab2e251SBlaise Bourdin if (label) { 67449566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, ids)); 6745dab2e251SBlaise Bourdin } else { 6746dab2e251SBlaise Bourdin /* returning an empty IS */ 67479566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_USE_POINTER, ids)); 6748dab2e251SBlaise Bourdin } 6749c58f1c22SToby Isaac PetscFunctionReturn(0); 6750c58f1c22SToby Isaac } 6751c58f1c22SToby Isaac 6752c58f1c22SToby Isaac /*@C 6753c58f1c22SToby Isaac DMGetStratumSize - Get the number of points in a label stratum 6754c58f1c22SToby Isaac 6755c58f1c22SToby Isaac Not Collective 6756c58f1c22SToby Isaac 6757c58f1c22SToby Isaac Input Parameters: 6758bb7acecfSBarry Smith + dm - The `DM` object 6759c58f1c22SToby Isaac . name - The label name 6760c58f1c22SToby Isaac - value - The stratum value 6761c58f1c22SToby Isaac 6762c58f1c22SToby Isaac Output Parameter: 6763bb7acecfSBarry Smith . size - The number of points, also called the stratum size 6764c58f1c22SToby Isaac 6765c58f1c22SToby Isaac Level: beginner 6766c58f1c22SToby Isaac 6767db781477SPatrick Sanan .seealso: `DMLabelGetStratumSize()`, `DMGetLabelSize()`, `DMGetLabelIds()` 6768c58f1c22SToby Isaac @*/ 6769d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumSize(DM dm, const char name[], PetscInt value, PetscInt *size) 6770d71ae5a4SJacob Faibussowitsch { 6771c58f1c22SToby Isaac DMLabel label; 6772c58f1c22SToby Isaac 6773c58f1c22SToby Isaac PetscFunctionBegin; 6774c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6775c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 6776534a8f05SLisandro Dalcin PetscValidIntPointer(size, 4); 67779566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6778c58f1c22SToby Isaac *size = 0; 6779c58f1c22SToby Isaac if (!label) PetscFunctionReturn(0); 67809566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, value, size)); 6781c58f1c22SToby Isaac PetscFunctionReturn(0); 6782c58f1c22SToby Isaac } 6783c58f1c22SToby Isaac 6784c58f1c22SToby Isaac /*@C 6785c58f1c22SToby Isaac DMGetStratumIS - Get the points in a label stratum 6786c58f1c22SToby Isaac 6787c58f1c22SToby Isaac Not Collective 6788c58f1c22SToby Isaac 6789c58f1c22SToby Isaac Input Parameters: 6790bb7acecfSBarry Smith + dm - The `DM` object 6791c58f1c22SToby Isaac . name - The label name 6792c58f1c22SToby Isaac - value - The stratum value 6793c58f1c22SToby Isaac 6794c58f1c22SToby Isaac Output Parameter: 6795c58f1c22SToby Isaac . points - The stratum points, or NULL if the label does not exist or does not have that value 6796c58f1c22SToby Isaac 6797c58f1c22SToby Isaac Level: beginner 6798c58f1c22SToby Isaac 6799db781477SPatrick Sanan .seealso: `DMLabelGetStratumIS()`, `DMGetStratumSize()` 6800c58f1c22SToby Isaac @*/ 6801d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumIS(DM dm, const char name[], PetscInt value, IS *points) 6802d71ae5a4SJacob Faibussowitsch { 6803c58f1c22SToby Isaac DMLabel label; 6804c58f1c22SToby Isaac 6805c58f1c22SToby Isaac PetscFunctionBegin; 6806c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6807c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 6808c58f1c22SToby Isaac PetscValidPointer(points, 4); 68099566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6810c58f1c22SToby Isaac *points = NULL; 6811c58f1c22SToby Isaac if (!label) PetscFunctionReturn(0); 68129566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, value, points)); 6813c58f1c22SToby Isaac PetscFunctionReturn(0); 6814c58f1c22SToby Isaac } 6815c58f1c22SToby Isaac 68164de306b1SToby Isaac /*@C 68179044fa66SMatthew G. Knepley DMSetStratumIS - Set the points in a label stratum 68184de306b1SToby Isaac 68194de306b1SToby Isaac Not Collective 68204de306b1SToby Isaac 68214de306b1SToby Isaac Input Parameters: 6822bb7acecfSBarry Smith + dm - The `DM` object 68234de306b1SToby Isaac . name - The label name 68244de306b1SToby Isaac . value - The stratum value 68254de306b1SToby Isaac - points - The stratum points 68264de306b1SToby Isaac 68274de306b1SToby Isaac Level: beginner 68284de306b1SToby Isaac 6829bb7acecfSBarry Smith .seealso: `DMLabel`, `DMClearLabelStratum()`, `DMLabelClearStratum()`, `DMLabelSetStratumIS()`, `DMGetStratumSize()` 68304de306b1SToby Isaac @*/ 6831d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetStratumIS(DM dm, const char name[], PetscInt value, IS points) 6832d71ae5a4SJacob Faibussowitsch { 68334de306b1SToby Isaac DMLabel label; 68344de306b1SToby Isaac 68354de306b1SToby Isaac PetscFunctionBegin; 68364de306b1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68374de306b1SToby Isaac PetscValidCharPointer(name, 2); 68384de306b1SToby Isaac PetscValidPointer(points, 4); 68399566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 68404de306b1SToby Isaac if (!label) PetscFunctionReturn(0); 68419566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(label, value, points)); 68424de306b1SToby Isaac PetscFunctionReturn(0); 68434de306b1SToby Isaac } 68444de306b1SToby Isaac 6845c58f1c22SToby Isaac /*@C 6846bb7acecfSBarry Smith DMClearLabelStratum - Remove all points from a stratum from a `DMLabel` 6847c58f1c22SToby Isaac 6848c58f1c22SToby Isaac Not Collective 6849c58f1c22SToby Isaac 6850c58f1c22SToby Isaac Input Parameters: 6851bb7acecfSBarry Smith + dm - The `DM` object 6852c58f1c22SToby Isaac . name - The label name 6853c58f1c22SToby Isaac - value - The label value for this point 6854c58f1c22SToby Isaac 6855c58f1c22SToby Isaac Output Parameter: 6856c58f1c22SToby Isaac 6857c58f1c22SToby Isaac Level: beginner 6858c58f1c22SToby Isaac 6859bb7acecfSBarry Smith .seealso: `DMLabel`, `DMLabelClearStratum()`, `DMSetLabelValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 6860c58f1c22SToby Isaac @*/ 6861d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelStratum(DM dm, const char name[], PetscInt value) 6862d71ae5a4SJacob Faibussowitsch { 6863c58f1c22SToby Isaac DMLabel label; 6864c58f1c22SToby Isaac 6865c58f1c22SToby Isaac PetscFunctionBegin; 6866c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6867c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 68689566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6869c58f1c22SToby Isaac if (!label) PetscFunctionReturn(0); 68709566063dSJacob Faibussowitsch PetscCall(DMLabelClearStratum(label, value)); 6871c58f1c22SToby Isaac PetscFunctionReturn(0); 6872c58f1c22SToby Isaac } 6873c58f1c22SToby Isaac 6874c58f1c22SToby Isaac /*@ 6875bb7acecfSBarry Smith DMGetNumLabels - Return the number of labels defined by on the `DM` 6876c58f1c22SToby Isaac 6877c58f1c22SToby Isaac Not Collective 6878c58f1c22SToby Isaac 6879c58f1c22SToby Isaac Input Parameter: 6880bb7acecfSBarry Smith . dm - The `DM` object 6881c58f1c22SToby Isaac 6882c58f1c22SToby Isaac Output Parameter: 6883c58f1c22SToby Isaac . numLabels - the number of Labels 6884c58f1c22SToby Isaac 6885c58f1c22SToby Isaac Level: intermediate 6886c58f1c22SToby Isaac 6887bb7acecfSBarry Smith .seealso: `DMLabel`, `DMGetLabelByNum()`, `DMGetLabelName()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6888c58f1c22SToby Isaac @*/ 6889d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumLabels(DM dm, PetscInt *numLabels) 6890d71ae5a4SJacob Faibussowitsch { 68915d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 6892c58f1c22SToby Isaac PetscInt n = 0; 6893c58f1c22SToby Isaac 6894c58f1c22SToby Isaac PetscFunctionBegin; 6895c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6896534a8f05SLisandro Dalcin PetscValidIntPointer(numLabels, 2); 68979371c9d4SSatish Balay while (next) { 68989371c9d4SSatish Balay ++n; 68999371c9d4SSatish Balay next = next->next; 69009371c9d4SSatish Balay } 6901c58f1c22SToby Isaac *numLabels = n; 6902c58f1c22SToby Isaac PetscFunctionReturn(0); 6903c58f1c22SToby Isaac } 6904c58f1c22SToby Isaac 6905c58f1c22SToby Isaac /*@C 6906c58f1c22SToby Isaac DMGetLabelName - Return the name of nth label 6907c58f1c22SToby Isaac 6908c58f1c22SToby Isaac Not Collective 6909c58f1c22SToby Isaac 6910c58f1c22SToby Isaac Input Parameters: 6911bb7acecfSBarry Smith + dm - The `DM` object 6912c58f1c22SToby Isaac - n - the label number 6913c58f1c22SToby Isaac 6914c58f1c22SToby Isaac Output Parameter: 6915c58f1c22SToby Isaac . name - the label name 6916c58f1c22SToby Isaac 6917c58f1c22SToby Isaac Level: intermediate 6918c58f1c22SToby Isaac 6919bb7acecfSBarry Smith Developer Note: 6920bb7acecfSBarry Smith Some of the functions that appropriate on labels using their number have the suffix ByNum, others do not. 6921bb7acecfSBarry Smith 6922bb7acecfSBarry Smith .seealso: `DMLabel`, `DMGetLabelByNum()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6923c58f1c22SToby Isaac @*/ 6924d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelName(DM dm, PetscInt n, const char **name) 6925d71ae5a4SJacob Faibussowitsch { 69265d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 6927c58f1c22SToby Isaac PetscInt l = 0; 6928c58f1c22SToby Isaac 6929c58f1c22SToby Isaac PetscFunctionBegin; 6930c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6931c58f1c22SToby Isaac PetscValidPointer(name, 3); 6932c58f1c22SToby Isaac while (next) { 6933c58f1c22SToby Isaac if (l == n) { 69349566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, name)); 6935c58f1c22SToby Isaac PetscFunctionReturn(0); 6936c58f1c22SToby Isaac } 6937c58f1c22SToby Isaac ++l; 6938c58f1c22SToby Isaac next = next->next; 6939c58f1c22SToby Isaac } 694063a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 6941c58f1c22SToby Isaac } 6942c58f1c22SToby Isaac 6943c58f1c22SToby Isaac /*@C 6944bb7acecfSBarry Smith DMHasLabel - Determine whether the `DM` has a label of a given name 6945c58f1c22SToby Isaac 6946c58f1c22SToby Isaac Not Collective 6947c58f1c22SToby Isaac 6948c58f1c22SToby Isaac Input Parameters: 6949bb7acecfSBarry Smith + dm - The `DM` object 6950c58f1c22SToby Isaac - name - The label name 6951c58f1c22SToby Isaac 6952c58f1c22SToby Isaac Output Parameter: 6953bb7acecfSBarry Smith . hasLabel - `PETSC_TRUE` if the label is present 6954c58f1c22SToby Isaac 6955c58f1c22SToby Isaac Level: intermediate 6956c58f1c22SToby Isaac 6957bb7acecfSBarry Smith .seealso: `DMLabel`, `DMGetLabel()`, `DMGetLabelByNum()`, `DMCreateLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6958c58f1c22SToby Isaac @*/ 6959d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasLabel(DM dm, const char name[], PetscBool *hasLabel) 6960d71ae5a4SJacob Faibussowitsch { 69615d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 6962d67d17b1SMatthew G. Knepley const char *lname; 6963c58f1c22SToby Isaac 6964c58f1c22SToby Isaac PetscFunctionBegin; 6965c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6966c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 6967534a8f05SLisandro Dalcin PetscValidBoolPointer(hasLabel, 3); 6968c58f1c22SToby Isaac *hasLabel = PETSC_FALSE; 6969c58f1c22SToby Isaac while (next) { 69709566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 69719566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, hasLabel)); 6972c58f1c22SToby Isaac if (*hasLabel) break; 6973c58f1c22SToby Isaac next = next->next; 6974c58f1c22SToby Isaac } 6975c58f1c22SToby Isaac PetscFunctionReturn(0); 6976c58f1c22SToby Isaac } 6977c58f1c22SToby Isaac 6978c58f1c22SToby Isaac /*@C 6979bb7acecfSBarry Smith DMGetLabel - Return the label of a given name, or NULL, from a `DM` 6980c58f1c22SToby Isaac 6981c58f1c22SToby Isaac Not Collective 6982c58f1c22SToby Isaac 6983c58f1c22SToby Isaac Input Parameters: 6984bb7acecfSBarry Smith + dm - The `DM` object 6985c58f1c22SToby Isaac - name - The label name 6986c58f1c22SToby Isaac 6987c58f1c22SToby Isaac Output Parameter: 6988bb7acecfSBarry Smith . label - The `DMLabel`, or NULL if the label is absent 6989c58f1c22SToby Isaac 6990bb7acecfSBarry Smith Default labels in a `DMPLEX`: 6991bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 6992bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 6993bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 6994bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 6995bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 6996bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 69976d7c9049SMatthew G. Knepley 6998c58f1c22SToby Isaac Level: intermediate 6999c58f1c22SToby Isaac 7000bb7acecfSBarry Smith .seealso: `DMLabel`, `DMHasLabel()`, `DMGetLabelByNum()`, `DMAddLabel()`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 7001c58f1c22SToby Isaac @*/ 7002d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabel(DM dm, const char name[], DMLabel *label) 7003d71ae5a4SJacob Faibussowitsch { 70045d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7005c58f1c22SToby Isaac PetscBool hasLabel; 7006d67d17b1SMatthew G. Knepley const char *lname; 7007c58f1c22SToby Isaac 7008c58f1c22SToby Isaac PetscFunctionBegin; 7009c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7010c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 7011c58f1c22SToby Isaac PetscValidPointer(label, 3); 7012c58f1c22SToby Isaac *label = NULL; 7013c58f1c22SToby Isaac while (next) { 70149566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 70159566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 7016c58f1c22SToby Isaac if (hasLabel) { 7017c58f1c22SToby Isaac *label = next->label; 7018c58f1c22SToby Isaac break; 7019c58f1c22SToby Isaac } 7020c58f1c22SToby Isaac next = next->next; 7021c58f1c22SToby Isaac } 7022c58f1c22SToby Isaac PetscFunctionReturn(0); 7023c58f1c22SToby Isaac } 7024c58f1c22SToby Isaac 7025c58f1c22SToby Isaac /*@C 7026bb7acecfSBarry Smith DMGetLabelByNum - Return the nth label on a `DM` 7027c58f1c22SToby Isaac 7028c58f1c22SToby Isaac Not Collective 7029c58f1c22SToby Isaac 7030c58f1c22SToby Isaac Input Parameters: 7031bb7acecfSBarry Smith + dm - The `DM` object 7032c58f1c22SToby Isaac - n - the label number 7033c58f1c22SToby Isaac 7034c58f1c22SToby Isaac Output Parameter: 7035c58f1c22SToby Isaac . label - the label 7036c58f1c22SToby Isaac 7037c58f1c22SToby Isaac Level: intermediate 7038c58f1c22SToby Isaac 7039bb7acecfSBarry Smith .seealso: `DMLabel`, `DMAddLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7040c58f1c22SToby Isaac @*/ 7041d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelByNum(DM dm, PetscInt n, DMLabel *label) 7042d71ae5a4SJacob Faibussowitsch { 70435d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7044c58f1c22SToby Isaac PetscInt l = 0; 7045c58f1c22SToby Isaac 7046c58f1c22SToby Isaac PetscFunctionBegin; 7047c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7048c58f1c22SToby Isaac PetscValidPointer(label, 3); 7049c58f1c22SToby Isaac while (next) { 7050c58f1c22SToby Isaac if (l == n) { 7051c58f1c22SToby Isaac *label = next->label; 7052c58f1c22SToby Isaac PetscFunctionReturn(0); 7053c58f1c22SToby Isaac } 7054c58f1c22SToby Isaac ++l; 7055c58f1c22SToby Isaac next = next->next; 7056c58f1c22SToby Isaac } 705763a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 7058c58f1c22SToby Isaac } 7059c58f1c22SToby Isaac 7060c58f1c22SToby Isaac /*@C 7061bb7acecfSBarry Smith DMAddLabel - Add the label to this `DM` 7062c58f1c22SToby Isaac 7063c58f1c22SToby Isaac Not Collective 7064c58f1c22SToby Isaac 7065c58f1c22SToby Isaac Input Parameters: 7066bb7acecfSBarry Smith + dm - The `DM` object 7067bb7acecfSBarry Smith - label - The `DMLabel` 7068c58f1c22SToby Isaac 7069c58f1c22SToby Isaac Level: developer 7070c58f1c22SToby Isaac 7071bb7acecfSBarry Smith .seealso: `DMLabel`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7072c58f1c22SToby Isaac @*/ 7073d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddLabel(DM dm, DMLabel label) 7074d71ae5a4SJacob Faibussowitsch { 70755d80c0bfSVaclav Hapla DMLabelLink l, *p, tmpLabel; 7076c58f1c22SToby Isaac PetscBool hasLabel; 7077d67d17b1SMatthew G. Knepley const char *lname; 70785d80c0bfSVaclav Hapla PetscBool flg; 7079c58f1c22SToby Isaac 7080c58f1c22SToby Isaac PetscFunctionBegin; 7081c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70829566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &lname)); 70839566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, lname, &hasLabel)); 70847a8be351SBarry Smith PetscCheck(!hasLabel, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in this DM", lname); 70859566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(1, &tmpLabel)); 7086c58f1c22SToby Isaac tmpLabel->label = label; 7087c58f1c22SToby Isaac tmpLabel->output = PETSC_TRUE; 70885d80c0bfSVaclav Hapla for (p = &dm->labels; (l = *p); p = &l->next) { } 70895d80c0bfSVaclav Hapla *p = tmpLabel; 70909566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 70919566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 70925d80c0bfSVaclav Hapla if (flg) dm->depthLabel = label; 70939566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 7094ba2698f1SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 7095c58f1c22SToby Isaac PetscFunctionReturn(0); 7096c58f1c22SToby Isaac } 7097c58f1c22SToby Isaac 7098c58f1c22SToby Isaac /*@C 70994a7ee7d0SMatthew G. Knepley DMSetLabel - Replaces the label of a given name, or ignores it if the name is not present 71004a7ee7d0SMatthew G. Knepley 71014a7ee7d0SMatthew G. Knepley Not Collective 71024a7ee7d0SMatthew G. Knepley 71034a7ee7d0SMatthew G. Knepley Input Parameters: 7104bb7acecfSBarry Smith + dm - The `DM` object 7105bb7acecfSBarry Smith - label - The `DMLabel`, having the same name, to substitute 71064a7ee7d0SMatthew G. Knepley 7107bb7acecfSBarry Smith Default labels in a `DMPLEX`: 7108bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 7109bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 7110bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 7111bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 7112bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 7113bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 71144a7ee7d0SMatthew G. Knepley 71154a7ee7d0SMatthew G. Knepley Level: intermediate 71164a7ee7d0SMatthew G. Knepley 7117bb7acecfSBarry Smith .seealso: `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 71184a7ee7d0SMatthew G. Knepley @*/ 7119d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabel(DM dm, DMLabel label) 7120d71ae5a4SJacob Faibussowitsch { 71214a7ee7d0SMatthew G. Knepley DMLabelLink next = dm->labels; 71224a7ee7d0SMatthew G. Knepley PetscBool hasLabel, flg; 71234a7ee7d0SMatthew G. Knepley const char *name, *lname; 71244a7ee7d0SMatthew G. Knepley 71254a7ee7d0SMatthew G. Knepley PetscFunctionBegin; 71264a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71274a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 71289566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 71294a7ee7d0SMatthew G. Knepley while (next) { 71309566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 71319566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 71324a7ee7d0SMatthew G. Knepley if (hasLabel) { 71339566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 71349566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 71354a7ee7d0SMatthew G. Knepley if (flg) dm->depthLabel = label; 71369566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 71374a7ee7d0SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 71389566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 71394a7ee7d0SMatthew G. Knepley next->label = label; 71404a7ee7d0SMatthew G. Knepley break; 71414a7ee7d0SMatthew G. Knepley } 71424a7ee7d0SMatthew G. Knepley next = next->next; 71434a7ee7d0SMatthew G. Knepley } 71444a7ee7d0SMatthew G. Knepley PetscFunctionReturn(0); 71454a7ee7d0SMatthew G. Knepley } 71464a7ee7d0SMatthew G. Knepley 71474a7ee7d0SMatthew G. Knepley /*@C 7148bb7acecfSBarry Smith DMRemoveLabel - Remove the label given by name from this `DM` 7149c58f1c22SToby Isaac 7150c58f1c22SToby Isaac Not Collective 7151c58f1c22SToby Isaac 7152c58f1c22SToby Isaac Input Parameters: 7153bb7acecfSBarry Smith + dm - The `DM` object 7154c58f1c22SToby Isaac - name - The label name 7155c58f1c22SToby Isaac 7156c58f1c22SToby Isaac Output Parameter: 7157bb7acecfSBarry Smith . label - The `DMLabel`, or NULL if the label is absent. Pass in NULL to call `DMLabelDestroy()` on the label, otherwise the 7158bb7acecfSBarry Smith caller is responsible for calling `DMLabelDestroy()`. 7159c58f1c22SToby Isaac 7160c58f1c22SToby Isaac Level: developer 7161c58f1c22SToby Isaac 7162bb7acecfSBarry Smith .seealso: `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabelBySelf()` 7163c58f1c22SToby Isaac @*/ 7164d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabel(DM dm, const char name[], DMLabel *label) 7165d71ae5a4SJacob Faibussowitsch { 716695d578d6SVaclav Hapla DMLabelLink link, *pnext; 7167c58f1c22SToby Isaac PetscBool hasLabel; 7168d67d17b1SMatthew G. Knepley const char *lname; 7169c58f1c22SToby Isaac 7170c58f1c22SToby Isaac PetscFunctionBegin; 7171c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7172e5472504SVaclav Hapla PetscValidCharPointer(name, 2); 7173e5472504SVaclav Hapla if (label) { 7174e5472504SVaclav Hapla PetscValidPointer(label, 3); 7175c58f1c22SToby Isaac *label = NULL; 7176e5472504SVaclav Hapla } 71775d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 71789566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)link->label, &lname)); 71799566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 7180c58f1c22SToby Isaac if (hasLabel) { 718195d578d6SVaclav Hapla *pnext = link->next; /* Remove from list */ 71829566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &hasLabel)); 718395d578d6SVaclav Hapla if (hasLabel) dm->depthLabel = NULL; 71849566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &hasLabel)); 7185ba2698f1SMatthew G. Knepley if (hasLabel) dm->celltypeLabel = NULL; 718695d578d6SVaclav Hapla if (label) *label = link->label; 71879566063dSJacob Faibussowitsch else PetscCall(DMLabelDestroy(&link->label)); 71889566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7189c58f1c22SToby Isaac break; 7190c58f1c22SToby Isaac } 7191c58f1c22SToby Isaac } 7192c58f1c22SToby Isaac PetscFunctionReturn(0); 7193c58f1c22SToby Isaac } 7194c58f1c22SToby Isaac 7195306894acSVaclav Hapla /*@ 7196bb7acecfSBarry Smith DMRemoveLabelBySelf - Remove the label from this `DM` 7197306894acSVaclav Hapla 7198306894acSVaclav Hapla Not Collective 7199306894acSVaclav Hapla 7200306894acSVaclav Hapla Input Parameters: 7201bb7acecfSBarry Smith + dm - The `DM` object 7202bb7acecfSBarry Smith . label - The `DMLabel` to be removed from the `DM` 7203306894acSVaclav Hapla - failNotFound - Should it fail if the label is not found in the DM? 7204306894acSVaclav Hapla 7205306894acSVaclav Hapla Level: developer 7206306894acSVaclav Hapla 7207bb7acecfSBarry Smith Note: 7208306894acSVaclav Hapla Only exactly the same instance is removed if found, name match is ignored. 7209bb7acecfSBarry Smith If the `DM` has an exclusive reference to the label, the label gets destroyed and 7210306894acSVaclav Hapla *label nullified. 7211306894acSVaclav Hapla 7212bb7acecfSBarry Smith .seealso: `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()` `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabel()` 7213306894acSVaclav Hapla @*/ 7214d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabelBySelf(DM dm, DMLabel *label, PetscBool failNotFound) 7215d71ae5a4SJacob Faibussowitsch { 721643e45a93SVaclav Hapla DMLabelLink link, *pnext; 7217306894acSVaclav Hapla PetscBool hasLabel = PETSC_FALSE; 7218306894acSVaclav Hapla 7219306894acSVaclav Hapla PetscFunctionBegin; 7220306894acSVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7221306894acSVaclav Hapla PetscValidPointer(label, 2); 7222f39a9ae0SVaclav Hapla if (!*label && !failNotFound) PetscFunctionReturn(0); 7223306894acSVaclav Hapla PetscValidHeaderSpecific(*label, DMLABEL_CLASSID, 2); 7224306894acSVaclav Hapla PetscValidLogicalCollectiveBool(dm, failNotFound, 3); 72255d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 722643e45a93SVaclav Hapla if (*label == link->label) { 7227306894acSVaclav Hapla hasLabel = PETSC_TRUE; 722843e45a93SVaclav Hapla *pnext = link->next; /* Remove from list */ 7229306894acSVaclav Hapla if (*label == dm->depthLabel) dm->depthLabel = NULL; 7230ba2698f1SMatthew G. Knepley if (*label == dm->celltypeLabel) dm->celltypeLabel = NULL; 723143e45a93SVaclav Hapla if (((PetscObject)link->label)->refct < 2) *label = NULL; /* nullify if exclusive reference */ 72329566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&link->label)); 72339566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7234306894acSVaclav Hapla break; 7235306894acSVaclav Hapla } 7236306894acSVaclav Hapla } 72377a8be351SBarry Smith PetscCheck(hasLabel || !failNotFound, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Given label not found in DM"); 7238306894acSVaclav Hapla PetscFunctionReturn(0); 7239306894acSVaclav Hapla } 7240306894acSVaclav Hapla 7241c58f1c22SToby Isaac /*@C 7242c58f1c22SToby Isaac DMGetLabelOutput - Get the output flag for a given label 7243c58f1c22SToby Isaac 7244c58f1c22SToby Isaac Not Collective 7245c58f1c22SToby Isaac 7246c58f1c22SToby Isaac Input Parameters: 7247bb7acecfSBarry Smith + dm - The `DM` object 7248c58f1c22SToby Isaac - name - The label name 7249c58f1c22SToby Isaac 7250c58f1c22SToby Isaac Output Parameter: 7251c58f1c22SToby Isaac . output - The flag for output 7252c58f1c22SToby Isaac 7253c58f1c22SToby Isaac Level: developer 7254c58f1c22SToby Isaac 7255bb7acecfSBarry Smith .seealso: `DMLabel`, `DMSetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7256c58f1c22SToby Isaac @*/ 7257d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelOutput(DM dm, const char name[], PetscBool *output) 7258d71ae5a4SJacob Faibussowitsch { 72595d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7260d67d17b1SMatthew G. Knepley const char *lname; 7261c58f1c22SToby Isaac 7262c58f1c22SToby Isaac PetscFunctionBegin; 7263c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7264dadcf809SJacob Faibussowitsch PetscValidCharPointer(name, 2); 7265dadcf809SJacob Faibussowitsch PetscValidBoolPointer(output, 3); 7266c58f1c22SToby Isaac while (next) { 7267c58f1c22SToby Isaac PetscBool flg; 7268c58f1c22SToby Isaac 72699566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 72709566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 72719371c9d4SSatish Balay if (flg) { 72729371c9d4SSatish Balay *output = next->output; 72739371c9d4SSatish Balay PetscFunctionReturn(0); 72749371c9d4SSatish Balay } 7275c58f1c22SToby Isaac next = next->next; 7276c58f1c22SToby Isaac } 727798921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7278c58f1c22SToby Isaac } 7279c58f1c22SToby Isaac 7280c58f1c22SToby Isaac /*@C 7281bb7acecfSBarry Smith DMSetLabelOutput - Set if a given label should be saved to a `PetscViewer` in calls to `DMView()` 7282c58f1c22SToby Isaac 7283c58f1c22SToby Isaac Not Collective 7284c58f1c22SToby Isaac 7285c58f1c22SToby Isaac Input Parameters: 7286bb7acecfSBarry Smith + dm - The `DM` object 7287c58f1c22SToby Isaac . name - The label name 7288bb7acecfSBarry Smith - output - `PETSC_TRUE` to save the label to the viewer 7289c58f1c22SToby Isaac 7290c58f1c22SToby Isaac Level: developer 7291c58f1c22SToby Isaac 7292bb7acecfSBarry Smith .seealso: `DMLabel`, `DMGetOutputFlag()`, `DMGetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7293c58f1c22SToby Isaac @*/ 7294d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelOutput(DM dm, const char name[], PetscBool output) 7295d71ae5a4SJacob Faibussowitsch { 72965d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7297d67d17b1SMatthew G. Knepley const char *lname; 7298c58f1c22SToby Isaac 7299c58f1c22SToby Isaac PetscFunctionBegin; 7300c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7301534a8f05SLisandro Dalcin PetscValidCharPointer(name, 2); 7302c58f1c22SToby Isaac while (next) { 7303c58f1c22SToby Isaac PetscBool flg; 7304c58f1c22SToby Isaac 73059566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 73069566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 73079371c9d4SSatish Balay if (flg) { 73089371c9d4SSatish Balay next->output = output; 73099371c9d4SSatish Balay PetscFunctionReturn(0); 73109371c9d4SSatish Balay } 7311c58f1c22SToby Isaac next = next->next; 7312c58f1c22SToby Isaac } 731398921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7314c58f1c22SToby Isaac } 7315c58f1c22SToby Isaac 7316c58f1c22SToby Isaac /*@ 7317bb7acecfSBarry Smith DMCopyLabels - Copy labels from one `DM` mesh to another `DM` with a superset of the points 7318c58f1c22SToby Isaac 7319d083f849SBarry Smith Collective on dmA 7320c58f1c22SToby Isaac 7321d8d19677SJose E. Roman Input Parameters: 7322bb7acecfSBarry Smith + dmA - The `DM` object with initial labels 7323bb7acecfSBarry Smith . dmB - The `DM` object to which labels are copied 7324bb7acecfSBarry Smith . mode - Copy labels by pointers (`PETSC_OWN_POINTER`) or duplicate them (`PETSC_COPY_VALUES`) 7325bb7acecfSBarry Smith . all - Copy all labels including "depth", "dim", and "celltype" (`PETSC_TRUE`) which are otherwise ignored (`PETSC_FALSE`) 7326bb7acecfSBarry Smith - emode - How to behave when a `DMLabel` in the source and destination `DM`s with the same name is encountered (see `DMCopyLabelsMode`) 7327c58f1c22SToby Isaac 7328c58f1c22SToby Isaac Level: intermediate 7329c58f1c22SToby Isaac 7330bb7acecfSBarry Smith Note: 73312cbb9b06SVaclav Hapla This is typically used when interpolating or otherwise adding to a mesh, or testing. 7332c58f1c22SToby Isaac 7333bb7acecfSBarry Smith .seealso: `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode` 7334c58f1c22SToby Isaac @*/ 7335d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyLabels(DM dmA, DM dmB, PetscCopyMode mode, PetscBool all, DMCopyLabelsMode emode) 7336d71ae5a4SJacob Faibussowitsch { 73372cbb9b06SVaclav Hapla DMLabel label, labelNew, labelOld; 7338c58f1c22SToby Isaac const char *name; 7339c58f1c22SToby Isaac PetscBool flg; 73405d80c0bfSVaclav Hapla DMLabelLink link; 7341c58f1c22SToby Isaac 73425d80c0bfSVaclav Hapla PetscFunctionBegin; 73435d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 73445d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 73455d80c0bfSVaclav Hapla PetscValidLogicalCollectiveEnum(dmA, mode, 3); 73465d80c0bfSVaclav Hapla PetscValidLogicalCollectiveBool(dmA, all, 4); 73477a8be351SBarry Smith PetscCheck(mode != PETSC_USE_POINTER, PetscObjectComm((PetscObject)dmA), PETSC_ERR_SUP, "PETSC_USE_POINTER not supported for objects"); 73485d80c0bfSVaclav Hapla if (dmA == dmB) PetscFunctionReturn(0); 73495d80c0bfSVaclav Hapla for (link = dmA->labels; link; link = link->next) { 73505d80c0bfSVaclav Hapla label = link->label; 73519566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 73525d80c0bfSVaclav Hapla if (!all) { 73539566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &flg)); 7354c58f1c22SToby Isaac if (flg) continue; 73559566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "dim", &flg)); 73567d5acc75SStefano Zampini if (flg) continue; 73579566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &flg)); 7358ba2698f1SMatthew G. Knepley if (flg) continue; 73595d80c0bfSVaclav Hapla } 73609566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmB, name, &labelOld)); 73612cbb9b06SVaclav Hapla if (labelOld) { 73622cbb9b06SVaclav Hapla switch (emode) { 7363d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_KEEP: 7364d71ae5a4SJacob Faibussowitsch continue; 7365d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_REPLACE: 7366d71ae5a4SJacob Faibussowitsch PetscCall(DMRemoveLabelBySelf(dmB, &labelOld, PETSC_TRUE)); 7367d71ae5a4SJacob Faibussowitsch break; 7368d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_FAIL: 7369d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in destination DM", name); 7370d71ae5a4SJacob Faibussowitsch default: 7371d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Unhandled DMCopyLabelsMode %d", (int)emode); 73722cbb9b06SVaclav Hapla } 73732cbb9b06SVaclav Hapla } 73745d80c0bfSVaclav Hapla if (mode == PETSC_COPY_VALUES) { 73759566063dSJacob Faibussowitsch PetscCall(DMLabelDuplicate(label, &labelNew)); 73765d80c0bfSVaclav Hapla } else { 73775d80c0bfSVaclav Hapla labelNew = label; 73785d80c0bfSVaclav Hapla } 73799566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dmB, labelNew)); 73809566063dSJacob Faibussowitsch if (mode == PETSC_COPY_VALUES) PetscCall(DMLabelDestroy(&labelNew)); 7381c58f1c22SToby Isaac } 7382c58f1c22SToby Isaac PetscFunctionReturn(0); 7383c58f1c22SToby Isaac } 7384461a15a0SLisandro Dalcin 7385609dae6eSVaclav Hapla /*@C 7386bb7acecfSBarry Smith DMCompareLabels - Compare labels of two `DMPLEX` meshes 7387609dae6eSVaclav Hapla 73885efe38ccSVaclav Hapla Collective 7389609dae6eSVaclav Hapla 7390609dae6eSVaclav Hapla Input Parameters: 7391bb7acecfSBarry Smith + dm0 - First `DM` object 7392bb7acecfSBarry Smith - dm1 - Second `DM` object 7393609dae6eSVaclav Hapla 7394609dae6eSVaclav Hapla Output Parameters 73955efe38ccSVaclav Hapla + equal - (Optional) Flag whether labels of dm0 and dm1 are the same 7396609dae6eSVaclav Hapla - message - (Optional) Message describing the difference, or NULL if there is no difference 7397609dae6eSVaclav Hapla 7398609dae6eSVaclav Hapla Level: intermediate 7399609dae6eSVaclav Hapla 7400609dae6eSVaclav Hapla Notes: 7401bb7acecfSBarry Smith The output flag equal will be the same on all processes. 7402bb7acecfSBarry Smith 7403bb7acecfSBarry Smith If equal is passed as NULL and difference is found, an error is thrown on all processes. 7404bb7acecfSBarry Smith 7405bb7acecfSBarry Smith Make sure to pass equal is NULL on all processes or none of them. 7406609dae6eSVaclav Hapla 74075efe38ccSVaclav Hapla The output message is set independently on each rank. 7408bb7acecfSBarry Smith 7409bb7acecfSBarry Smith message must be freed with `PetscFree()` 7410bb7acecfSBarry Smith 7411bb7acecfSBarry Smith If message is passed as NULL and a difference is found, the difference description is printed to stderr in synchronized manner. 7412bb7acecfSBarry Smith 7413bb7acecfSBarry Smith Make sure to pass message as NULL on all processes or no processes. 7414609dae6eSVaclav Hapla 7415609dae6eSVaclav Hapla Labels are matched by name. If the number of labels and their names are equal, 7416bb7acecfSBarry Smith `DMLabelCompare()` is used to compare each pair of labels with the same name. 7417609dae6eSVaclav Hapla 7418bb7acecfSBarry Smith Fortran Note: 7419bb7acecfSBarry Smith This function is not available from Fortran. 7420609dae6eSVaclav Hapla 7421bb7acecfSBarry Smith .seealso: `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`, `DMLabelCompare()` 7422609dae6eSVaclav Hapla @*/ 7423d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompareLabels(DM dm0, DM dm1, PetscBool *equal, char **message) 7424d71ae5a4SJacob Faibussowitsch { 74255efe38ccSVaclav Hapla PetscInt n, i; 7426609dae6eSVaclav Hapla char msg[PETSC_MAX_PATH_LEN] = ""; 74275efe38ccSVaclav Hapla PetscBool eq; 7428609dae6eSVaclav Hapla MPI_Comm comm; 74295efe38ccSVaclav Hapla PetscMPIInt rank; 7430609dae6eSVaclav Hapla 7431609dae6eSVaclav Hapla PetscFunctionBegin; 7432609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm0, DM_CLASSID, 1); 7433609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm1, DM_CLASSID, 2); 7434609dae6eSVaclav Hapla PetscCheckSameComm(dm0, 1, dm1, 2); 74355efe38ccSVaclav Hapla if (equal) PetscValidBoolPointer(equal, 3); 7436609dae6eSVaclav Hapla if (message) PetscValidPointer(message, 4); 74379566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm0, &comm)); 74389566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 74395efe38ccSVaclav Hapla { 74405efe38ccSVaclav Hapla PetscInt n1; 74415efe38ccSVaclav Hapla 74429566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm0, &n)); 74439566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm1, &n1)); 74445efe38ccSVaclav Hapla eq = (PetscBool)(n == n1); 744548a46eb9SPierre Jolivet if (!eq) PetscCall(PetscSNPrintf(msg, sizeof(msg), "Number of labels in dm0 = %" PetscInt_FMT " != %" PetscInt_FMT " = Number of labels in dm1", n, n1)); 74469566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 74475efe38ccSVaclav Hapla if (!eq) goto finish; 74485efe38ccSVaclav Hapla } 74495efe38ccSVaclav Hapla for (i = 0; i < n; i++) { 7450609dae6eSVaclav Hapla DMLabel l0, l1; 7451609dae6eSVaclav Hapla const char *name; 7452609dae6eSVaclav Hapla char *msgInner; 7453609dae6eSVaclav Hapla 7454609dae6eSVaclav Hapla /* Ignore label order */ 74559566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm0, i, &l0)); 74569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)l0, &name)); 74579566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm1, name, &l1)); 7458609dae6eSVaclav Hapla if (!l1) { 745963a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(msg, sizeof(msg), "Label \"%s\" (#%" PetscInt_FMT " in dm0) not found in dm1", name, i)); 74605efe38ccSVaclav Hapla eq = PETSC_FALSE; 74615efe38ccSVaclav Hapla break; 7462609dae6eSVaclav Hapla } 74639566063dSJacob Faibussowitsch PetscCall(DMLabelCompare(comm, l0, l1, &eq, &msgInner)); 74649566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(msg, msgInner, sizeof(msg))); 74659566063dSJacob Faibussowitsch PetscCall(PetscFree(msgInner)); 74665efe38ccSVaclav Hapla if (!eq) break; 7467609dae6eSVaclav Hapla } 74689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 7469609dae6eSVaclav Hapla finish: 74705efe38ccSVaclav Hapla /* If message output arg not set, print to stderr */ 7471609dae6eSVaclav Hapla if (message) { 7472609dae6eSVaclav Hapla *message = NULL; 747348a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscStrallocpy(msg, message)); 74745efe38ccSVaclav Hapla } else { 747548a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscSynchronizedFPrintf(comm, PETSC_STDERR, "[%d] %s\n", rank, msg)); 74769566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, PETSC_STDERR)); 74775efe38ccSVaclav Hapla } 74785efe38ccSVaclav Hapla /* If same output arg not ser and labels are not equal, throw error */ 74795efe38ccSVaclav Hapla if (equal) *equal = eq; 74807a8be351SBarry Smith else PetscCheck(eq, comm, PETSC_ERR_ARG_INCOMP, "DMLabels are not the same in dm0 and dm1"); 7481609dae6eSVaclav Hapla PetscFunctionReturn(0); 7482609dae6eSVaclav Hapla } 7483609dae6eSVaclav Hapla 7484d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue_Fast(DM dm, DMLabel *label, const char name[], PetscInt point, PetscInt value) 7485d71ae5a4SJacob Faibussowitsch { 7486461a15a0SLisandro Dalcin PetscFunctionBegin; 7487461a15a0SLisandro Dalcin PetscValidPointer(label, 2); 7488461a15a0SLisandro Dalcin if (!*label) { 74899566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 74909566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, label)); 7491461a15a0SLisandro Dalcin } 74929566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(*label, point, value)); 7493461a15a0SLisandro Dalcin PetscFunctionReturn(0); 7494461a15a0SLisandro Dalcin } 7495461a15a0SLisandro Dalcin 74960fdc7489SMatthew Knepley /* 74970fdc7489SMatthew Knepley Many mesh programs, such as Triangle and TetGen, allow only a single label for each mesh point. Therefore, we would 74980fdc7489SMatthew Knepley like to encode all label IDs using a single, universal label. We can do this by assigning an integer to every 74990fdc7489SMatthew Knepley (label, id) pair in the DM. 75000fdc7489SMatthew Knepley 75010fdc7489SMatthew Knepley However, a mesh point can have multiple labels, so we must separate all these values. We will assign a bit range to 75020fdc7489SMatthew Knepley each label. 75030fdc7489SMatthew Knepley */ 7504d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreate(DM dm, DMUniversalLabel *universal) 7505d71ae5a4SJacob Faibussowitsch { 75060fdc7489SMatthew Knepley DMUniversalLabel ul; 75070fdc7489SMatthew Knepley PetscBool *active; 75080fdc7489SMatthew Knepley PetscInt pStart, pEnd, p, Nl, l, m; 75090fdc7489SMatthew Knepley 75100fdc7489SMatthew Knepley PetscFunctionBegin; 75119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &ul)); 75129566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "universal", &ul->label)); 75139566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 75149566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Nl, &active)); 75150fdc7489SMatthew Knepley ul->Nl = 0; 75160fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 75170fdc7489SMatthew Knepley PetscBool isdepth, iscelltype; 75180fdc7489SMatthew Knepley const char *name; 75190fdc7489SMatthew Knepley 75209566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 75219566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "depth", 6, &isdepth)); 75229566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "celltype", 9, &iscelltype)); 75230fdc7489SMatthew Knepley active[l] = !(isdepth || iscelltype) ? PETSC_TRUE : PETSC_FALSE; 75240fdc7489SMatthew Knepley if (active[l]) ++ul->Nl; 75250fdc7489SMatthew Knepley } 75269566063dSJacob Faibussowitsch PetscCall(PetscCalloc5(ul->Nl, &ul->names, ul->Nl, &ul->indices, ul->Nl + 1, &ul->offsets, ul->Nl + 1, &ul->bits, ul->Nl, &ul->masks)); 75270fdc7489SMatthew Knepley ul->Nv = 0; 75280fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 75290fdc7489SMatthew Knepley DMLabel label; 75300fdc7489SMatthew Knepley PetscInt nv; 75310fdc7489SMatthew Knepley const char *name; 75320fdc7489SMatthew Knepley 75330fdc7489SMatthew Knepley if (!active[l]) continue; 75349566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 75359566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 75369566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 75379566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(name, &ul->names[m])); 75380fdc7489SMatthew Knepley ul->indices[m] = l; 75390fdc7489SMatthew Knepley ul->Nv += nv; 75400fdc7489SMatthew Knepley ul->offsets[m + 1] = nv; 75410fdc7489SMatthew Knepley ul->bits[m + 1] = PetscCeilReal(PetscLog2Real(nv + 1)); 75420fdc7489SMatthew Knepley ++m; 75430fdc7489SMatthew Knepley } 75440fdc7489SMatthew Knepley for (l = 1; l <= ul->Nl; ++l) { 75450fdc7489SMatthew Knepley ul->offsets[l] = ul->offsets[l - 1] + ul->offsets[l]; 75460fdc7489SMatthew Knepley ul->bits[l] = ul->bits[l - 1] + ul->bits[l]; 75470fdc7489SMatthew Knepley } 75480fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 75490fdc7489SMatthew Knepley PetscInt b; 75500fdc7489SMatthew Knepley 75510fdc7489SMatthew Knepley ul->masks[l] = 0; 75520fdc7489SMatthew Knepley for (b = ul->bits[l]; b < ul->bits[l + 1]; ++b) ul->masks[l] |= 1 << b; 75530fdc7489SMatthew Knepley } 75549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ul->Nv, &ul->values)); 75550fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 75560fdc7489SMatthew Knepley DMLabel label; 75570fdc7489SMatthew Knepley IS valueIS; 75580fdc7489SMatthew Knepley const PetscInt *varr; 75590fdc7489SMatthew Knepley PetscInt nv, v; 75600fdc7489SMatthew Knepley 75610fdc7489SMatthew Knepley if (!active[l]) continue; 75629566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 75639566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 75649566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 75659566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &varr)); 7566ad540459SPierre Jolivet for (v = 0; v < nv; ++v) ul->values[ul->offsets[m] + v] = varr[v]; 75679566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &varr)); 75689566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 75699566063dSJacob Faibussowitsch PetscCall(PetscSortInt(nv, &ul->values[ul->offsets[m]])); 75700fdc7489SMatthew Knepley ++m; 75710fdc7489SMatthew Knepley } 75729566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 75730fdc7489SMatthew Knepley for (p = pStart; p < pEnd; ++p) { 75740fdc7489SMatthew Knepley PetscInt uval = 0; 75750fdc7489SMatthew Knepley PetscBool marked = PETSC_FALSE; 75760fdc7489SMatthew Knepley 75770fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 75780fdc7489SMatthew Knepley DMLabel label; 75790649b39aSStefano Zampini PetscInt val, defval, loc, nv; 75800fdc7489SMatthew Knepley 75810fdc7489SMatthew Knepley if (!active[l]) continue; 75829566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 75839566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, p, &val)); 75849566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defval)); 75859371c9d4SSatish Balay if (val == defval) { 75869371c9d4SSatish Balay ++m; 75879371c9d4SSatish Balay continue; 75889371c9d4SSatish Balay } 75890649b39aSStefano Zampini nv = ul->offsets[m + 1] - ul->offsets[m]; 75900fdc7489SMatthew Knepley marked = PETSC_TRUE; 75919566063dSJacob Faibussowitsch PetscCall(PetscFindInt(val, nv, &ul->values[ul->offsets[m]], &loc)); 759263a3b9bcSJacob Faibussowitsch PetscCheck(loc >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Label value %" PetscInt_FMT " not found in compression array", val); 75930fdc7489SMatthew Knepley uval += (loc + 1) << ul->bits[m]; 75940fdc7489SMatthew Knepley ++m; 75950fdc7489SMatthew Knepley } 75969566063dSJacob Faibussowitsch if (marked) PetscCall(DMLabelSetValue(ul->label, p, uval)); 75970fdc7489SMatthew Knepley } 75989566063dSJacob Faibussowitsch PetscCall(PetscFree(active)); 75990fdc7489SMatthew Knepley *universal = ul; 76000fdc7489SMatthew Knepley PetscFunctionReturn(0); 76010fdc7489SMatthew Knepley } 76020fdc7489SMatthew Knepley 7603d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelDestroy(DMUniversalLabel *universal) 7604d71ae5a4SJacob Faibussowitsch { 76050fdc7489SMatthew Knepley PetscInt l; 76060fdc7489SMatthew Knepley 76070fdc7489SMatthew Knepley PetscFunctionBegin; 76089566063dSJacob Faibussowitsch for (l = 0; l < (*universal)->Nl; ++l) PetscCall(PetscFree((*universal)->names[l])); 76099566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&(*universal)->label)); 76109566063dSJacob Faibussowitsch PetscCall(PetscFree5((*universal)->names, (*universal)->indices, (*universal)->offsets, (*universal)->bits, (*universal)->masks)); 76119566063dSJacob Faibussowitsch PetscCall(PetscFree((*universal)->values)); 76129566063dSJacob Faibussowitsch PetscCall(PetscFree(*universal)); 76130fdc7489SMatthew Knepley *universal = NULL; 76140fdc7489SMatthew Knepley PetscFunctionReturn(0); 76150fdc7489SMatthew Knepley } 76160fdc7489SMatthew Knepley 7617d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelGetLabel(DMUniversalLabel ul, DMLabel *ulabel) 7618d71ae5a4SJacob Faibussowitsch { 76190fdc7489SMatthew Knepley PetscFunctionBegin; 76200fdc7489SMatthew Knepley PetscValidPointer(ulabel, 2); 76210fdc7489SMatthew Knepley *ulabel = ul->label; 76220fdc7489SMatthew Knepley PetscFunctionReturn(0); 76230fdc7489SMatthew Knepley } 76240fdc7489SMatthew Knepley 7625d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreateLabels(DMUniversalLabel ul, PetscBool preserveOrder, DM dm) 7626d71ae5a4SJacob Faibussowitsch { 76270fdc7489SMatthew Knepley PetscInt Nl = ul->Nl, l; 76280fdc7489SMatthew Knepley 76290fdc7489SMatthew Knepley PetscFunctionBegin; 7630064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dm, DM_CLASSID, 3); 76310fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 76329566063dSJacob Faibussowitsch if (preserveOrder) PetscCall(DMCreateLabelAtIndex(dm, ul->indices[l], ul->names[l])); 76339566063dSJacob Faibussowitsch else PetscCall(DMCreateLabel(dm, ul->names[l])); 76340fdc7489SMatthew Knepley } 76350fdc7489SMatthew Knepley if (preserveOrder) { 76360fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 76370fdc7489SMatthew Knepley const char *name; 76380fdc7489SMatthew Knepley PetscBool match; 76390fdc7489SMatthew Knepley 76409566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, ul->indices[l], &name)); 76419566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, ul->names[l], &match)); 764263a3b9bcSJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Label %" PetscInt_FMT " name %s does not match new name %s", l, name, ul->names[l]); 76430fdc7489SMatthew Knepley } 76440fdc7489SMatthew Knepley } 76450fdc7489SMatthew Knepley PetscFunctionReturn(0); 76460fdc7489SMatthew Knepley } 76470fdc7489SMatthew Knepley 7648d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelSetLabelValue(DMUniversalLabel ul, DM dm, PetscBool useIndex, PetscInt p, PetscInt value) 7649d71ae5a4SJacob Faibussowitsch { 76500fdc7489SMatthew Knepley PetscInt l; 76510fdc7489SMatthew Knepley 76520fdc7489SMatthew Knepley PetscFunctionBegin; 76530fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 76540fdc7489SMatthew Knepley DMLabel label; 76550fdc7489SMatthew Knepley PetscInt lval = (value & ul->masks[l]) >> ul->bits[l]; 76560fdc7489SMatthew Knepley 76570fdc7489SMatthew Knepley if (lval) { 76589566063dSJacob Faibussowitsch if (useIndex) PetscCall(DMGetLabelByNum(dm, ul->indices[l], &label)); 76599566063dSJacob Faibussowitsch else PetscCall(DMGetLabel(dm, ul->names[l], &label)); 76609566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, ul->values[ul->offsets[l] + lval - 1])); 76610fdc7489SMatthew Knepley } 76620fdc7489SMatthew Knepley } 76630fdc7489SMatthew Knepley PetscFunctionReturn(0); 76640fdc7489SMatthew Knepley } 7665a8fb8f29SToby Isaac 7666a8fb8f29SToby Isaac /*@ 7667bb7acecfSBarry Smith DMGetCoarseDM - Get the coarse `DM`from which this `DM` was obtained by refinement 7668bb7acecfSBarry Smith 7669bb7acecfSBarry Smith Not collective 7670a8fb8f29SToby Isaac 7671a8fb8f29SToby Isaac Input Parameter: 7672bb7acecfSBarry Smith . dm - The `DM` object 7673a8fb8f29SToby Isaac 7674a8fb8f29SToby Isaac Output Parameter: 7675bb7acecfSBarry Smith . cdm - The coarse `DM` 7676a8fb8f29SToby Isaac 7677a8fb8f29SToby Isaac Level: intermediate 7678a8fb8f29SToby Isaac 7679bb7acecfSBarry Smith .seealso: `DMSetCoarseDM()`, `DMCoarsen()` 7680a8fb8f29SToby Isaac @*/ 7681d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarseDM(DM dm, DM *cdm) 7682d71ae5a4SJacob Faibussowitsch { 7683a8fb8f29SToby Isaac PetscFunctionBegin; 7684a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7685a8fb8f29SToby Isaac PetscValidPointer(cdm, 2); 7686a8fb8f29SToby Isaac *cdm = dm->coarseMesh; 7687a8fb8f29SToby Isaac PetscFunctionReturn(0); 7688a8fb8f29SToby Isaac } 7689a8fb8f29SToby Isaac 7690a8fb8f29SToby Isaac /*@ 7691bb7acecfSBarry Smith DMSetCoarseDM - Set the coarse `DM` from which this `DM` was obtained by refinement 7692a8fb8f29SToby Isaac 7693a8fb8f29SToby Isaac Input Parameters: 7694bb7acecfSBarry Smith + dm - The `DM` object 7695bb7acecfSBarry Smith - cdm - The coarse `DM` 7696a8fb8f29SToby Isaac 7697a8fb8f29SToby Isaac Level: intermediate 7698a8fb8f29SToby Isaac 7699bb7acecfSBarry Smith Note: 7700bb7acecfSBarry Smith Normally this is set automatically by `DMRefine()` 7701bb7acecfSBarry Smith 7702bb7acecfSBarry Smith .seealso: `DMGetCoarseDM()`, `DMCoarsen()`, `DMSetRefine()`, `DMSetFineDM()` 7703a8fb8f29SToby Isaac @*/ 7704d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarseDM(DM dm, DM cdm) 7705d71ae5a4SJacob Faibussowitsch { 7706a8fb8f29SToby Isaac PetscFunctionBegin; 7707a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7708a8fb8f29SToby Isaac if (cdm) PetscValidHeaderSpecific(cdm, DM_CLASSID, 2); 770989d734beSBarry Smith if (dm == cdm) cdm = NULL; 77109566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)cdm)); 77119566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->coarseMesh)); 7712a8fb8f29SToby Isaac dm->coarseMesh = cdm; 7713a8fb8f29SToby Isaac PetscFunctionReturn(0); 7714a8fb8f29SToby Isaac } 7715a8fb8f29SToby Isaac 771688bdff64SToby Isaac /*@ 7717bb7acecfSBarry Smith DMGetFineDM - Get the fine mesh from which this `DM` was obtained by coarsening 771888bdff64SToby Isaac 771988bdff64SToby Isaac Input Parameter: 7720bb7acecfSBarry Smith . dm - The `DM` object 772188bdff64SToby Isaac 772288bdff64SToby Isaac Output Parameter: 7723bb7acecfSBarry Smith . fdm - The fine `DM` 772488bdff64SToby Isaac 772588bdff64SToby Isaac Level: intermediate 772688bdff64SToby Isaac 7727bb7acecfSBarry Smith .seealso: `DMSetFineDM()`, `DMCoarsen()`, `DMRefine()` 772888bdff64SToby Isaac @*/ 7729d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFineDM(DM dm, DM *fdm) 7730d71ae5a4SJacob Faibussowitsch { 773188bdff64SToby Isaac PetscFunctionBegin; 773288bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 773388bdff64SToby Isaac PetscValidPointer(fdm, 2); 773488bdff64SToby Isaac *fdm = dm->fineMesh; 773588bdff64SToby Isaac PetscFunctionReturn(0); 773688bdff64SToby Isaac } 773788bdff64SToby Isaac 773888bdff64SToby Isaac /*@ 7739bb7acecfSBarry Smith DMSetFineDM - Set the fine mesh from which this was obtained by coarsening 774088bdff64SToby Isaac 774188bdff64SToby Isaac Input Parameters: 7742bb7acecfSBarry Smith + dm - The `DM` object 7743bb7acecfSBarry Smith - fdm - The fine `DM` 774488bdff64SToby Isaac 7745bb7acecfSBarry Smith Level: developer 774688bdff64SToby Isaac 7747bb7acecfSBarry Smith Note: 7748bb7acecfSBarry Smith Normally this is set automatically by `DMCoarsen()` 7749bb7acecfSBarry Smith 7750bb7acecfSBarry Smith .seealso: `DMGetFineDM()`, `DMCoarsen()`, `DMRefine()` 775188bdff64SToby Isaac @*/ 7752d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFineDM(DM dm, DM fdm) 7753d71ae5a4SJacob Faibussowitsch { 775488bdff64SToby Isaac PetscFunctionBegin; 775588bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 775688bdff64SToby Isaac if (fdm) PetscValidHeaderSpecific(fdm, DM_CLASSID, 2); 775789d734beSBarry Smith if (dm == fdm) fdm = NULL; 77589566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fdm)); 77599566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->fineMesh)); 776088bdff64SToby Isaac dm->fineMesh = fdm; 776188bdff64SToby Isaac PetscFunctionReturn(0); 776288bdff64SToby Isaac } 776388bdff64SToby Isaac 7764a6ba4734SToby Isaac /*@C 7765bb7acecfSBarry Smith DMAddBoundary - Add a boundary condition to a model represented by a `DM` 7766a6ba4734SToby Isaac 7767783e2ec8SMatthew G. Knepley Collective on dm 7768783e2ec8SMatthew G. Knepley 7769a6ba4734SToby Isaac Input Parameters: 7770bb7acecfSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 7771bb7acecfSBarry Smith . type - The type of condition, e.g. `DM_BC_ESSENTIAL_ANALYTIC`, `DM_BC_ESSENTIAL_FIELD` (Dirichlet), or `DM_BC_NATURAL` (Neumann) 7772a6ba4734SToby Isaac . name - The BC name 777345480ffeSMatthew G. Knepley . label - The label defining constrained points 7774bb7acecfSBarry Smith . Nv - The number of `DMLabel` values for constrained points 777545480ffeSMatthew G. Knepley . values - An array of values for constrained points 7776a6ba4734SToby Isaac . field - The field to constrain 777745480ffeSMatthew G. Knepley . Nc - The number of constrained field components (0 will constrain all fields) 7778a6ba4734SToby Isaac . comps - An array of constrained component numbers 7779a6ba4734SToby Isaac . bcFunc - A pointwise function giving boundary values 778056cf3b9cSMatthew G. Knepley . bcFunc_t - A pointwise function giving the time deriative of the boundary values, or NULL 7781a6ba4734SToby Isaac - ctx - An optional user context for bcFunc 7782a6ba4734SToby Isaac 778345480ffeSMatthew G. Knepley Output Parameter: 778445480ffeSMatthew G. Knepley . bd - (Optional) Boundary number 778545480ffeSMatthew G. Knepley 7786a6ba4734SToby Isaac Options Database Keys: 7787a6ba4734SToby Isaac + -bc_<boundary name> <num> - Overrides the boundary ids 7788a6ba4734SToby Isaac - -bc_<boundary name>_comp <num> - Overrides the boundary components 7789a6ba4734SToby Isaac 7790bb7acecfSBarry Smith Notes: 7791bb7acecfSBarry Smith Both bcFunc abd bcFunc_t will depend on the boundary condition type. If the type if `DM_BC_ESSENTIAL`, then the calling sequence is: 779256cf3b9cSMatthew G. Knepley 779356cf3b9cSMatthew G. Knepley $ bcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[]) 779456cf3b9cSMatthew G. Knepley 7795bb7acecfSBarry Smith If the type is `DM_BC_ESSENTIAL_FIELD` or other _FIELD value, then the calling sequence is: 779656cf3b9cSMatthew G. Knepley 779756cf3b9cSMatthew G. Knepley $ bcFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux, 779856cf3b9cSMatthew G. Knepley $ const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 779956cf3b9cSMatthew G. Knepley $ const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 780056cf3b9cSMatthew G. Knepley $ PetscReal time, const PetscReal x[], PetscScalar bcval[]) 780156cf3b9cSMatthew G. Knepley 780256cf3b9cSMatthew G. Knepley + dim - the spatial dimension 780356cf3b9cSMatthew G. Knepley . Nf - the number of fields 780456cf3b9cSMatthew G. Knepley . uOff - the offset into u[] and u_t[] for each field 780556cf3b9cSMatthew G. Knepley . uOff_x - the offset into u_x[] for each field 780656cf3b9cSMatthew G. Knepley . u - each field evaluated at the current point 780756cf3b9cSMatthew G. Knepley . u_t - the time derivative of each field evaluated at the current point 780856cf3b9cSMatthew G. Knepley . u_x - the gradient of each field evaluated at the current point 780956cf3b9cSMatthew G. Knepley . aOff - the offset into a[] and a_t[] for each auxiliary field 781056cf3b9cSMatthew G. Knepley . aOff_x - the offset into a_x[] for each auxiliary field 781156cf3b9cSMatthew G. Knepley . a - each auxiliary field evaluated at the current point 781256cf3b9cSMatthew G. Knepley . a_t - the time derivative of each auxiliary field evaluated at the current point 781356cf3b9cSMatthew G. Knepley . a_x - the gradient of auxiliary each field evaluated at the current point 781456cf3b9cSMatthew G. Knepley . t - current time 781556cf3b9cSMatthew G. Knepley . x - coordinates of the current point 781656cf3b9cSMatthew G. Knepley . numConstants - number of constant parameters 781756cf3b9cSMatthew G. Knepley . constants - constant parameters 781856cf3b9cSMatthew G. Knepley - bcval - output values at the current point 781956cf3b9cSMatthew G. Knepley 7820ed808b8fSJed Brown Level: intermediate 7821a6ba4734SToby Isaac 7822db781477SPatrick Sanan .seealso: `DSGetBoundary()`, `PetscDSAddBoundary()` 7823a6ba4734SToby Isaac @*/ 7824d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddBoundary(DM dm, DMBoundaryConditionType type, const char name[], DMLabel label, PetscInt Nv, const PetscInt values[], PetscInt field, PetscInt Nc, const PetscInt comps[], void (*bcFunc)(void), void (*bcFunc_t)(void), void *ctx, PetscInt *bd) 7825d71ae5a4SJacob Faibussowitsch { 7826e5e52638SMatthew G. Knepley PetscDS ds; 7827a6ba4734SToby Isaac 7828a6ba4734SToby Isaac PetscFunctionBegin; 7829a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7830783e2ec8SMatthew G. Knepley PetscValidLogicalCollectiveEnum(dm, type, 2); 783145480ffeSMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 4); 783245480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nv, 5); 783345480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, field, 7); 783445480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 8); 783501a5d20dSJed Brown PetscCheck(!dm->localSection, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot add boundary to DM after creating local section"); 78369566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 7837799db056SMatthew G. Knepley /* Complete label */ 7838799db056SMatthew G. Knepley if (label) { 7839799db056SMatthew G. Knepley PetscObject obj; 7840799db056SMatthew G. Knepley PetscClassId id; 7841799db056SMatthew G. Knepley 7842799db056SMatthew G. Knepley PetscCall(DMGetField(dm, field, NULL, &obj)); 7843799db056SMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 7844799db056SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 7845799db056SMatthew G. Knepley DM plex; 7846799db056SMatthew G. Knepley 7847799db056SMatthew G. Knepley PetscCall(DMConvert(dm, DMPLEX, &plex)); 7848799db056SMatthew G. Knepley if (plex) PetscCall(DMPlexLabelComplete(plex, label)); 7849799db056SMatthew G. Knepley PetscCall(DMDestroy(&plex)); 7850799db056SMatthew G. Knepley } 7851799db056SMatthew G. Knepley } 78529566063dSJacob Faibussowitsch PetscCall(PetscDSAddBoundary(ds, type, name, label, Nv, values, field, Nc, comps, bcFunc, bcFunc_t, ctx, bd)); 7853a6ba4734SToby Isaac PetscFunctionReturn(0); 7854a6ba4734SToby Isaac } 7855a6ba4734SToby Isaac 785645480ffeSMatthew G. Knepley /* TODO Remove this since now the structures are the same */ 7857d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPopulateBoundary(DM dm) 7858d71ae5a4SJacob Faibussowitsch { 7859e5e52638SMatthew G. Knepley PetscDS ds; 7860dff059c6SToby Isaac DMBoundary *lastnext; 7861e6f8dbb6SToby Isaac DSBoundary dsbound; 7862e6f8dbb6SToby Isaac 7863e6f8dbb6SToby Isaac PetscFunctionBegin; 78649566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 7865e5e52638SMatthew G. Knepley dsbound = ds->boundary; 786647a1f5adSToby Isaac if (dm->boundary) { 786747a1f5adSToby Isaac DMBoundary next = dm->boundary; 786847a1f5adSToby Isaac 786947a1f5adSToby Isaac /* quick check to see if the PetscDS has changed */ 787047a1f5adSToby Isaac if (next->dsboundary == dsbound) PetscFunctionReturn(0); 787147a1f5adSToby Isaac /* the PetscDS has changed: tear down and rebuild */ 787247a1f5adSToby Isaac while (next) { 787347a1f5adSToby Isaac DMBoundary b = next; 787447a1f5adSToby Isaac 787547a1f5adSToby Isaac next = b->next; 78769566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 7877a6ba4734SToby Isaac } 787847a1f5adSToby Isaac dm->boundary = NULL; 7879a6ba4734SToby Isaac } 788047a1f5adSToby Isaac 7881dff059c6SToby Isaac lastnext = &(dm->boundary); 7882e6f8dbb6SToby Isaac while (dsbound) { 7883e6f8dbb6SToby Isaac DMBoundary dmbound; 7884e6f8dbb6SToby Isaac 78859566063dSJacob Faibussowitsch PetscCall(PetscNew(&dmbound)); 7886e6f8dbb6SToby Isaac dmbound->dsboundary = dsbound; 788745480ffeSMatthew G. Knepley dmbound->label = dsbound->label; 788847a1f5adSToby Isaac /* push on the back instead of the front so that it is in the same order as in the PetscDS */ 7889dff059c6SToby Isaac *lastnext = dmbound; 7890dff059c6SToby Isaac lastnext = &(dmbound->next); 7891dff059c6SToby Isaac dsbound = dsbound->next; 7892a6ba4734SToby Isaac } 7893a6ba4734SToby Isaac PetscFunctionReturn(0); 7894a6ba4734SToby Isaac } 7895a6ba4734SToby Isaac 7896bb7acecfSBarry Smith /* TODO: missing manual page */ 7897d71ae5a4SJacob Faibussowitsch PetscErrorCode DMIsBoundaryPoint(DM dm, PetscInt point, PetscBool *isBd) 7898d71ae5a4SJacob Faibussowitsch { 7899b95f2879SToby Isaac DMBoundary b; 7900a6ba4734SToby Isaac 7901a6ba4734SToby Isaac PetscFunctionBegin; 7902a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7903534a8f05SLisandro Dalcin PetscValidBoolPointer(isBd, 3); 7904a6ba4734SToby Isaac *isBd = PETSC_FALSE; 79059566063dSJacob Faibussowitsch PetscCall(DMPopulateBoundary(dm)); 7906b95f2879SToby Isaac b = dm->boundary; 7907a6ba4734SToby Isaac while (b && !(*isBd)) { 7908e6f8dbb6SToby Isaac DMLabel label = b->label; 7909e6f8dbb6SToby Isaac DSBoundary dsb = b->dsboundary; 7910a6ba4734SToby Isaac PetscInt i; 7911a6ba4734SToby Isaac 791245480ffeSMatthew G. Knepley if (label) { 79139566063dSJacob Faibussowitsch for (i = 0; i < dsb->Nv && !(*isBd); ++i) PetscCall(DMLabelStratumHasPoint(label, dsb->values[i], point, isBd)); 7914a6ba4734SToby Isaac } 7915a6ba4734SToby Isaac b = b->next; 7916a6ba4734SToby Isaac } 7917a6ba4734SToby Isaac PetscFunctionReturn(0); 7918a6ba4734SToby Isaac } 79194d6f44ffSToby Isaac 79204d6f44ffSToby Isaac /*@C 7921bb7acecfSBarry Smith DMProjectFunction - This projects the given function into the function space provided by a `DM`, putting the coefficients in a global vector. 7922a6e0b375SMatthew G. Knepley 7923bb7acecfSBarry Smith Collective on dm 79244d6f44ffSToby Isaac 79254d6f44ffSToby Isaac Input Parameters: 7926bb7acecfSBarry Smith + dm - The `DM` 79270709b2feSToby Isaac . time - The time 79284d6f44ffSToby Isaac . funcs - The coordinate functions to evaluate, one per field 79294d6f44ffSToby Isaac . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 79304d6f44ffSToby Isaac - mode - The insertion mode for values 79314d6f44ffSToby Isaac 79324d6f44ffSToby Isaac Output Parameter: 79334d6f44ffSToby Isaac . X - vector 79344d6f44ffSToby Isaac 79354d6f44ffSToby Isaac Calling sequence of func: 793677b739a6SMatthew Knepley $ func(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx); 79374d6f44ffSToby Isaac 79384d6f44ffSToby Isaac + dim - The spatial dimension 79398ec8862eSJed Brown . time - The time at which to sample 79404d6f44ffSToby Isaac . x - The coordinates 794177b739a6SMatthew Knepley . Nc - The number of components 79424d6f44ffSToby Isaac . u - The output field values 79434d6f44ffSToby Isaac - ctx - optional user-defined function context 79444d6f44ffSToby Isaac 79454d6f44ffSToby Isaac Level: developer 79464d6f44ffSToby Isaac 7947bb7acecfSBarry Smith Developer Notes: 7948bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 7949bb7acecfSBarry Smith 7950bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 7951bb7acecfSBarry Smith 7952db781477SPatrick Sanan .seealso: `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 79534d6f44ffSToby Isaac @*/ 7954d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFunction(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec X) 7955d71ae5a4SJacob Faibussowitsch { 79564d6f44ffSToby Isaac Vec localX; 79574d6f44ffSToby Isaac 79584d6f44ffSToby Isaac PetscFunctionBegin; 79594d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 79609566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 7961f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 79629566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, mode, localX)); 79639566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 79649566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 79659566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 79664d6f44ffSToby Isaac PetscFunctionReturn(0); 79674d6f44ffSToby Isaac } 79684d6f44ffSToby Isaac 7969a6e0b375SMatthew G. Knepley /*@C 7970bb7acecfSBarry Smith DMProjectFunctionLocal - This projects the given function into the function space provided by a `DM`, putting the coefficients in a local vector. 7971a6e0b375SMatthew G. Knepley 7972a6e0b375SMatthew G. Knepley Not collective 7973a6e0b375SMatthew G. Knepley 7974a6e0b375SMatthew G. Knepley Input Parameters: 7975bb7acecfSBarry Smith + dm - The `DM` 7976a6e0b375SMatthew G. Knepley . time - The time 7977a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 7978a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 7979a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 7980a6e0b375SMatthew G. Knepley 7981a6e0b375SMatthew G. Knepley Output Parameter: 7982a6e0b375SMatthew G. Knepley . localX - vector 7983a6e0b375SMatthew G. Knepley 7984a6e0b375SMatthew G. Knepley Calling sequence of func: 798577b739a6SMatthew Knepley $ func(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx); 7986a6e0b375SMatthew G. Knepley 7987a6e0b375SMatthew G. Knepley + dim - The spatial dimension 7988a6e0b375SMatthew G. Knepley . x - The coordinates 798977b739a6SMatthew Knepley . Nc - The number of components 7990a6e0b375SMatthew G. Knepley . u - The output field values 7991a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 7992a6e0b375SMatthew G. Knepley 7993a6e0b375SMatthew G. Knepley Level: developer 7994a6e0b375SMatthew G. Knepley 7995bb7acecfSBarry Smith Developer Notes: 7996bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 7997bb7acecfSBarry Smith 7998bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 7999bb7acecfSBarry Smith 8000db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 8001a6e0b375SMatthew G. Knepley @*/ 8002d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec localX) 8003d71ae5a4SJacob Faibussowitsch { 80044d6f44ffSToby Isaac PetscFunctionBegin; 80054d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8006064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 80079566063dSJacob Faibussowitsch PetscCall((dm->ops->projectfunctionlocal)(dm, time, funcs, ctxs, mode, localX)); 80084d6f44ffSToby Isaac PetscFunctionReturn(0); 80094d6f44ffSToby Isaac } 80104d6f44ffSToby Isaac 8011a6e0b375SMatthew G. Knepley /*@C 8012bb7acecfSBarry Smith DMProjectFunctionLabel - This projects the given function into the function space provided by the `DM`, putting the coefficients in a global vector, setting values only for points in the given label. 8013a6e0b375SMatthew G. Knepley 8014bb7acecfSBarry Smith Collective on dm 8015a6e0b375SMatthew G. Knepley 8016a6e0b375SMatthew G. Knepley Input Parameters: 8017bb7acecfSBarry Smith + dm - The `DM` 8018a6e0b375SMatthew G. Knepley . time - The time 8019bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8020a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8021bb7acecfSBarry Smith . ctxs - Optional array of contexts to pass to each coordinate function. ctxs may be null. 8022a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8023a6e0b375SMatthew G. Knepley 8024a6e0b375SMatthew G. Knepley Output Parameter: 8025a6e0b375SMatthew G. Knepley . X - vector 8026a6e0b375SMatthew G. Knepley 8027a6e0b375SMatthew G. Knepley Calling sequence of func: 802877b739a6SMatthew Knepley $ func(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx); 8029a6e0b375SMatthew G. Knepley 8030a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8031a6e0b375SMatthew G. Knepley . x - The coordinates 803277b739a6SMatthew Knepley . Nc - The number of components 8033a6e0b375SMatthew G. Knepley . u - The output field values 8034a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8035a6e0b375SMatthew G. Knepley 8036a6e0b375SMatthew G. Knepley Level: developer 8037a6e0b375SMatthew G. Knepley 8038bb7acecfSBarry Smith Developer Notes: 8039bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8040bb7acecfSBarry Smith 8041bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8042bb7acecfSBarry Smith 8043db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`, `DMComputeL2Diff()` 8044a6e0b375SMatthew G. Knepley @*/ 8045d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec X) 8046d71ae5a4SJacob Faibussowitsch { 80472c53366bSMatthew G. Knepley Vec localX; 80482c53366bSMatthew G. Knepley 80492c53366bSMatthew G. Knepley PetscFunctionBegin; 80502c53366bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 80519566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 8052f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 80539566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX)); 80549566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 80559566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 80569566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 80572c53366bSMatthew G. Knepley PetscFunctionReturn(0); 80582c53366bSMatthew G. Knepley } 80592c53366bSMatthew G. Knepley 8060a6e0b375SMatthew G. Knepley /*@C 8061bb7acecfSBarry Smith DMProjectFunctionLabelLocal - This projects the given function into the function space provided by the `DM`, putting the coefficients in a local vector, setting values only for points in the given label. 8062a6e0b375SMatthew G. Knepley 8063a6e0b375SMatthew G. Knepley Not collective 8064a6e0b375SMatthew G. Knepley 8065a6e0b375SMatthew G. Knepley Input Parameters: 8066bb7acecfSBarry Smith + dm - The `DM` 8067a6e0b375SMatthew G. Knepley . time - The time 8068bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8069a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8070a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 8071a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8072a6e0b375SMatthew G. Knepley 8073a6e0b375SMatthew G. Knepley Output Parameter: 8074a6e0b375SMatthew G. Knepley . localX - vector 8075a6e0b375SMatthew G. Knepley 8076a6e0b375SMatthew G. Knepley Calling sequence of func: 807777b739a6SMatthew Knepley $ func(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx); 8078a6e0b375SMatthew G. Knepley 8079a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8080a6e0b375SMatthew G. Knepley . x - The coordinates 808177b739a6SMatthew Knepley . Nc - The number of components 8082a6e0b375SMatthew G. Knepley . u - The output field values 8083a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8084a6e0b375SMatthew G. Knepley 8085a6e0b375SMatthew G. Knepley Level: developer 8086a6e0b375SMatthew G. Knepley 8087bb7acecfSBarry Smith Developer Notes: 8088bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8089bb7acecfSBarry Smith 8090bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8091bb7acecfSBarry Smith 8092db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 8093a6e0b375SMatthew G. Knepley @*/ 8094d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec localX) 8095d71ae5a4SJacob Faibussowitsch { 80964d6f44ffSToby Isaac PetscFunctionBegin; 80974d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8098064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 80999566063dSJacob Faibussowitsch PetscCall((dm->ops->projectfunctionlabellocal)(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX)); 81004d6f44ffSToby Isaac PetscFunctionReturn(0); 81014d6f44ffSToby Isaac } 81022716604bSToby Isaac 8103a6e0b375SMatthew G. Knepley /*@C 8104bb7acecfSBarry Smith DMProjectFieldLocal - This projects the given function of the input fields into the function space provided by the `DM`, putting the coefficients in a local vector. 8105a6e0b375SMatthew G. Knepley 8106a6e0b375SMatthew G. Knepley Not collective 8107a6e0b375SMatthew G. Knepley 8108a6e0b375SMatthew G. Knepley Input Parameters: 8109bb7acecfSBarry Smith + dm - The `DM` 8110a6e0b375SMatthew G. Knepley . time - The time 8111eb8f539aSJed Brown . localU - The input field vector; may be NULL if projection is defined purely by coordinates 8112a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8113a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8114a6e0b375SMatthew G. Knepley 8115a6e0b375SMatthew G. Knepley Output Parameter: 8116a6e0b375SMatthew G. Knepley . localX - The output vector 8117a6e0b375SMatthew G. Knepley 8118a6e0b375SMatthew G. Knepley Calling sequence of func: 8119a6e0b375SMatthew G. Knepley $ func(PetscInt dim, PetscInt Nf, PetscInt NfAux, 8120a6e0b375SMatthew G. Knepley $ const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 8121a6e0b375SMatthew G. Knepley $ const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 8122a6e0b375SMatthew G. Knepley $ PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]); 8123a6e0b375SMatthew G. Knepley 8124a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8125a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8126a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8127a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8128a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8129a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8130a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8131a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8132a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8133a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8134a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8135a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8136a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8137a6e0b375SMatthew G. Knepley . t - The current time 8138a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8139a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8140a6e0b375SMatthew G. Knepley . constants - The value of each constant 8141a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8142a6e0b375SMatthew G. Knepley 8143bb7acecfSBarry Smith Note: 8144bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8145bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8146bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8147a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8148a6e0b375SMatthew G. Knepley 8149a6e0b375SMatthew G. Knepley Level: intermediate 8150a6e0b375SMatthew G. Knepley 8151bb7acecfSBarry Smith Developer Notes: 8152bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8153bb7acecfSBarry Smith 8154bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8155bb7acecfSBarry Smith 8156db781477SPatrick Sanan .seealso: `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8157a6e0b375SMatthew G. Knepley @*/ 8158d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFieldLocal(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), InsertMode mode, Vec localX) 8159d71ae5a4SJacob Faibussowitsch { 81608c6c5593SMatthew G. Knepley PetscFunctionBegin; 81618c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8162eb8f539aSJed Brown if (localU) PetscValidHeaderSpecific(localU, VEC_CLASSID, 3); 81638c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 81649566063dSJacob Faibussowitsch PetscCall((dm->ops->projectfieldlocal)(dm, time, localU, funcs, mode, localX)); 81658c6c5593SMatthew G. Knepley PetscFunctionReturn(0); 81668c6c5593SMatthew G. Knepley } 81678c6c5593SMatthew G. Knepley 8168a6e0b375SMatthew G. Knepley /*@C 8169a6e0b375SMatthew G. Knepley DMProjectFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain specified by the label. 8170a6e0b375SMatthew G. Knepley 8171a6e0b375SMatthew G. Knepley Not collective 8172a6e0b375SMatthew G. Knepley 8173a6e0b375SMatthew G. Knepley Input Parameters: 8174bb7acecfSBarry Smith + dm - The `DM` 8175a6e0b375SMatthew G. Knepley . time - The time 8176bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8177a6e0b375SMatthew G. Knepley . numIds - The number of label ids to use 8178a6e0b375SMatthew G. Knepley . ids - The label ids to use for marking 8179bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 8180a6e0b375SMatthew G. Knepley . comps - The components to set in the output, or NULL for all components 8181a6e0b375SMatthew G. Knepley . localU - The input field vector 8182a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8183a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8184a6e0b375SMatthew G. Knepley 8185a6e0b375SMatthew G. Knepley Output Parameter: 8186a6e0b375SMatthew G. Knepley . localX - The output vector 8187a6e0b375SMatthew G. Knepley 8188a6e0b375SMatthew G. Knepley Calling sequence of func: 8189a6e0b375SMatthew G. Knepley $ func(PetscInt dim, PetscInt Nf, PetscInt NfAux, 8190a6e0b375SMatthew G. Knepley $ const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 8191a6e0b375SMatthew G. Knepley $ const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 8192a6e0b375SMatthew G. Knepley $ PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]); 8193a6e0b375SMatthew G. Knepley 8194a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8195a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8196a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8197a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8198a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8199a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8200a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8201a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8202a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8203a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8204a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8205a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8206a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8207a6e0b375SMatthew G. Knepley . t - The current time 8208a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8209a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8210a6e0b375SMatthew G. Knepley . constants - The value of each constant 8211a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8212a6e0b375SMatthew G. Knepley 8213bb7acecfSBarry Smith Note: 8214bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8215bb7acecfSBarry Smith The input `DM`, attached to localU, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8216bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8217a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8218a6e0b375SMatthew G. Knepley 8219a6e0b375SMatthew G. Knepley Level: intermediate 8220a6e0b375SMatthew G. Knepley 8221bb7acecfSBarry Smith Developer Notes: 8222bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8223bb7acecfSBarry Smith 8224bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8225bb7acecfSBarry Smith 8226d29d7c6eSMatthew G. Knepley .seealso: `DMProjectField()`, `DMProjectFieldLabel()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8227a6e0b375SMatthew G. Knepley @*/ 8228d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), InsertMode mode, Vec localX) 8229d71ae5a4SJacob Faibussowitsch { 82308c6c5593SMatthew G. Knepley PetscFunctionBegin; 82318c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8232064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8233064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 82349566063dSJacob Faibussowitsch PetscCall((dm->ops->projectfieldlabellocal)(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX)); 82358c6c5593SMatthew G. Knepley PetscFunctionReturn(0); 82368c6c5593SMatthew G. Knepley } 82378c6c5593SMatthew G. Knepley 82382716604bSToby Isaac /*@C 8239d29d7c6eSMatthew G. Knepley DMProjectFieldLabel - This projects the given function of the input fields into the function space provided, putting the coefficients in a global vector, calculating only over the portion of the domain specified by the label. 8240d29d7c6eSMatthew G. Knepley 8241d29d7c6eSMatthew G. Knepley Not collective 8242d29d7c6eSMatthew G. Knepley 8243d29d7c6eSMatthew G. Knepley Input Parameters: 8244bb7acecfSBarry Smith + dm - The `DM` 8245d29d7c6eSMatthew G. Knepley . time - The time 8246bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8247d29d7c6eSMatthew G. Knepley . numIds - The number of label ids to use 8248d29d7c6eSMatthew G. Knepley . ids - The label ids to use for marking 8249bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 8250d29d7c6eSMatthew G. Knepley . comps - The components to set in the output, or NULL for all components 8251d29d7c6eSMatthew G. Knepley . U - The input field vector 8252d29d7c6eSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8253d29d7c6eSMatthew G. Knepley - mode - The insertion mode for values 8254d29d7c6eSMatthew G. Knepley 8255d29d7c6eSMatthew G. Knepley Output Parameter: 8256d29d7c6eSMatthew G. Knepley . X - The output vector 8257d29d7c6eSMatthew G. Knepley 8258d29d7c6eSMatthew G. Knepley Calling sequence of func: 8259d29d7c6eSMatthew G. Knepley $ func(PetscInt dim, PetscInt Nf, PetscInt NfAux, 8260d29d7c6eSMatthew G. Knepley $ const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 8261d29d7c6eSMatthew G. Knepley $ const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 8262d29d7c6eSMatthew G. Knepley $ PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]); 8263d29d7c6eSMatthew G. Knepley 8264d29d7c6eSMatthew G. Knepley + dim - The spatial dimension 8265d29d7c6eSMatthew G. Knepley . Nf - The number of input fields 8266d29d7c6eSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8267d29d7c6eSMatthew G. Knepley . uOff - The offset of each field in u[] 8268d29d7c6eSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8269d29d7c6eSMatthew G. Knepley . u - The field values at this point in space 8270d29d7c6eSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8271d29d7c6eSMatthew G. Knepley . u_x - The field derivatives at this point in space 8272d29d7c6eSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8273d29d7c6eSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8274d29d7c6eSMatthew G. Knepley . a - The auxiliary field values at this point in space 8275d29d7c6eSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8276d29d7c6eSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8277d29d7c6eSMatthew G. Knepley . t - The current time 8278d29d7c6eSMatthew G. Knepley . x - The coordinates of this point 8279d29d7c6eSMatthew G. Knepley . numConstants - The number of constants 8280d29d7c6eSMatthew G. Knepley . constants - The value of each constant 8281d29d7c6eSMatthew G. Knepley - f - The value of the function at this point in space 8282d29d7c6eSMatthew G. Knepley 8283bb7acecfSBarry Smith Note: 8284bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8285bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8286bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8287d29d7c6eSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8288d29d7c6eSMatthew G. Knepley 8289d29d7c6eSMatthew G. Knepley Level: intermediate 8290d29d7c6eSMatthew G. Knepley 8291bb7acecfSBarry Smith Developer Notes: 8292bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8293bb7acecfSBarry Smith 8294bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8295bb7acecfSBarry Smith 8296d29d7c6eSMatthew G. Knepley .seealso: `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8297d29d7c6eSMatthew G. Knepley @*/ 8298d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec U, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), InsertMode mode, Vec X) 8299d71ae5a4SJacob Faibussowitsch { 8300d29d7c6eSMatthew G. Knepley DM dmIn; 8301d29d7c6eSMatthew G. Knepley Vec localU, localX; 8302d29d7c6eSMatthew G. Knepley 8303d29d7c6eSMatthew G. Knepley PetscFunctionBegin; 8304d29d7c6eSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8305d29d7c6eSMatthew G. Knepley PetscCall(VecGetDM(U, &dmIn)); 8306d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dmIn, &localU)); 8307d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &localX)); 8308f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 830972fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalBegin(dmIn, U, mode, localU)); 831072fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalEnd(dmIn, U, mode, localU)); 8311d29d7c6eSMatthew G. Knepley PetscCall(DMProjectFieldLabelLocal(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX)); 8312d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 8313d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 8314d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &localX)); 8315d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dmIn, &localU)); 8316d29d7c6eSMatthew G. Knepley PetscFunctionReturn(0); 8317d29d7c6eSMatthew G. Knepley } 8318d29d7c6eSMatthew G. Knepley 8319d29d7c6eSMatthew G. Knepley /*@C 8320ece3a9fcSMatthew G. Knepley DMProjectBdFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain boundary specified by the label. 8321ece3a9fcSMatthew G. Knepley 8322ece3a9fcSMatthew G. Knepley Not collective 8323ece3a9fcSMatthew G. Knepley 8324ece3a9fcSMatthew G. Knepley Input Parameters: 8325bb7acecfSBarry Smith + dm - The `DM` 8326ece3a9fcSMatthew G. Knepley . time - The time 8327bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain boundary to output 8328ece3a9fcSMatthew G. Knepley . numIds - The number of label ids to use 8329ece3a9fcSMatthew G. Knepley . ids - The label ids to use for marking 8330bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 8331ece3a9fcSMatthew G. Knepley . comps - The components to set in the output, or NULL for all components 8332ece3a9fcSMatthew G. Knepley . localU - The input field vector 8333ece3a9fcSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8334ece3a9fcSMatthew G. Knepley - mode - The insertion mode for values 8335ece3a9fcSMatthew G. Knepley 8336ece3a9fcSMatthew G. Knepley Output Parameter: 8337ece3a9fcSMatthew G. Knepley . localX - The output vector 8338ece3a9fcSMatthew G. Knepley 8339ece3a9fcSMatthew G. Knepley Calling sequence of func: 8340ece3a9fcSMatthew G. Knepley $ func(PetscInt dim, PetscInt Nf, PetscInt NfAux, 8341ece3a9fcSMatthew G. Knepley $ const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 8342ece3a9fcSMatthew G. Knepley $ const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 8343ece3a9fcSMatthew G. Knepley $ PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]); 8344ece3a9fcSMatthew G. Knepley 8345ece3a9fcSMatthew G. Knepley + dim - The spatial dimension 8346ece3a9fcSMatthew G. Knepley . Nf - The number of input fields 8347ece3a9fcSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8348ece3a9fcSMatthew G. Knepley . uOff - The offset of each field in u[] 8349ece3a9fcSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8350ece3a9fcSMatthew G. Knepley . u - The field values at this point in space 8351ece3a9fcSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8352ece3a9fcSMatthew G. Knepley . u_x - The field derivatives at this point in space 8353ece3a9fcSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8354ece3a9fcSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8355ece3a9fcSMatthew G. Knepley . a - The auxiliary field values at this point in space 8356ece3a9fcSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8357ece3a9fcSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8358ece3a9fcSMatthew G. Knepley . t - The current time 8359ece3a9fcSMatthew G. Knepley . x - The coordinates of this point 8360ece3a9fcSMatthew G. Knepley . n - The face normal 8361ece3a9fcSMatthew G. Knepley . numConstants - The number of constants 8362ece3a9fcSMatthew G. Knepley . constants - The value of each constant 8363ece3a9fcSMatthew G. Knepley - f - The value of the function at this point in space 8364ece3a9fcSMatthew G. Knepley 8365ece3a9fcSMatthew G. Knepley Note: 8366bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8367bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8368bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8369ece3a9fcSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8370ece3a9fcSMatthew G. Knepley 8371ece3a9fcSMatthew G. Knepley Level: intermediate 8372ece3a9fcSMatthew G. Knepley 8373bb7acecfSBarry Smith Developer Notes: 8374bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8375bb7acecfSBarry Smith 8376bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8377bb7acecfSBarry Smith 8378db781477SPatrick Sanan .seealso: `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8379ece3a9fcSMatthew G. Knepley @*/ 8380d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectBdFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), InsertMode mode, Vec localX) 8381d71ae5a4SJacob Faibussowitsch { 8382ece3a9fcSMatthew G. Knepley PetscFunctionBegin; 8383ece3a9fcSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8384064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8385064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 83869566063dSJacob Faibussowitsch PetscCall((dm->ops->projectbdfieldlabellocal)(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX)); 8387ece3a9fcSMatthew G. Knepley PetscFunctionReturn(0); 8388ece3a9fcSMatthew G. Knepley } 8389ece3a9fcSMatthew G. Knepley 8390ece3a9fcSMatthew G. Knepley /*@C 83912716604bSToby Isaac DMComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 83922716604bSToby Isaac 8393bb7acecfSBarry Smith Collective on dm 8394bb7acecfSBarry Smith 83952716604bSToby Isaac Input Parameters: 8396bb7acecfSBarry Smith + dm - The `DM` 83970709b2feSToby Isaac . time - The time 83982716604bSToby Isaac . funcs - The functions to evaluate for each field component 83992716604bSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8400574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 84012716604bSToby Isaac 84022716604bSToby Isaac Output Parameter: 84032716604bSToby Isaac . diff - The diff ||u - u_h||_2 84042716604bSToby Isaac 84052716604bSToby Isaac Level: developer 84062716604bSToby Isaac 8407bb7acecfSBarry Smith Developer Notes: 8408bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8409bb7acecfSBarry Smith 8410bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8411bb7acecfSBarry Smith 8412db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 84132716604bSToby Isaac @*/ 8414d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 8415d71ae5a4SJacob Faibussowitsch { 84162716604bSToby Isaac PetscFunctionBegin; 84172716604bSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8418b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 84199566063dSJacob Faibussowitsch PetscCall((dm->ops->computel2diff)(dm, time, funcs, ctxs, X, diff)); 84202716604bSToby Isaac PetscFunctionReturn(0); 84212716604bSToby Isaac } 8422b698f381SToby Isaac 8423b698f381SToby Isaac /*@C 8424b698f381SToby Isaac DMComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h. 8425b698f381SToby Isaac 8426d083f849SBarry Smith Collective on dm 8427d083f849SBarry Smith 8428b698f381SToby Isaac Input Parameters: 8429bb7acecfSBarry Smith + dm - The `DM` 8430b698f381SToby Isaac , time - The time 8431b698f381SToby Isaac . funcs - The gradient functions to evaluate for each field component 8432b698f381SToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8433574a98acSMatthew G. Knepley . X - The coefficient vector u_h, a global vector 8434b698f381SToby Isaac - n - The vector to project along 8435b698f381SToby Isaac 8436b698f381SToby Isaac Output Parameter: 8437b698f381SToby Isaac . diff - The diff ||(grad u - grad u_h) . n||_2 8438b698f381SToby Isaac 8439b698f381SToby Isaac Level: developer 8440b698f381SToby Isaac 8441bb7acecfSBarry Smith Developer Notes: 8442bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8443bb7acecfSBarry Smith 8444bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8445bb7acecfSBarry Smith 8446bb7acecfSBarry Smith .seealso: `DMProjectFunction()`, `DMComputeL2Diff()`, `DMComputeL2FieldDiff()` 8447b698f381SToby Isaac @*/ 8448d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 8449d71ae5a4SJacob Faibussowitsch { 8450b698f381SToby Isaac PetscFunctionBegin; 8451b698f381SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8452b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 84539566063dSJacob Faibussowitsch PetscCall((dm->ops->computel2gradientdiff)(dm, time, funcs, ctxs, X, n, diff)); 8454b698f381SToby Isaac PetscFunctionReturn(0); 8455b698f381SToby Isaac } 8456b698f381SToby Isaac 84572a16baeaSToby Isaac /*@C 84582a16baeaSToby Isaac DMComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components. 84592a16baeaSToby Isaac 8460d083f849SBarry Smith Collective on dm 8461d083f849SBarry Smith 84622a16baeaSToby Isaac Input Parameters: 8463bb7acecfSBarry Smith + dm - The `DM` 84642a16baeaSToby Isaac . time - The time 84652a16baeaSToby Isaac . funcs - The functions to evaluate for each field component 84662a16baeaSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8467574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 84682a16baeaSToby Isaac 84692a16baeaSToby Isaac Output Parameter: 84702a16baeaSToby Isaac . diff - The array of differences, ||u^f - u^f_h||_2 84712a16baeaSToby Isaac 84722a16baeaSToby Isaac Level: developer 84732a16baeaSToby Isaac 8474bb7acecfSBarry Smith Developer Notes: 8475bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8476bb7acecfSBarry Smith 8477bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8478bb7acecfSBarry Smith 8479db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 84802a16baeaSToby Isaac @*/ 8481d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[]) 8482d71ae5a4SJacob Faibussowitsch { 84832a16baeaSToby Isaac PetscFunctionBegin; 84842a16baeaSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 84852a16baeaSToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 84869566063dSJacob Faibussowitsch PetscCall((dm->ops->computel2fielddiff)(dm, time, funcs, ctxs, X, diff)); 84872a16baeaSToby Isaac PetscFunctionReturn(0); 84882a16baeaSToby Isaac } 84892a16baeaSToby Isaac 8490df0b854cSToby Isaac /*@C 8491bb7acecfSBarry Smith DMGetNeighbors - Gets an array containing the MPI ranks of all the processes neighbors 8492502a2867SDave May 8493502a2867SDave May Not Collective 8494502a2867SDave May 8495502a2867SDave May Input Parameter: 8496bb7acecfSBarry Smith . dm - The `DM` 8497502a2867SDave May 84980a19bb7dSprj- Output Parameters: 84990a19bb7dSprj- + nranks - the number of neighbours 85000a19bb7dSprj- - ranks - the neighbors ranks 8501502a2867SDave May 8502bb7acecfSBarry Smith Note: 8503bb7acecfSBarry Smith Do not free the array, it is freed when the `DM` is destroyed. 8504502a2867SDave May 8505502a2867SDave May Level: beginner 8506502a2867SDave May 8507db781477SPatrick Sanan .seealso: `DMDAGetNeighbors()`, `PetscSFGetRootRanks()` 8508502a2867SDave May @*/ 8509d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNeighbors(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[]) 8510d71ae5a4SJacob Faibussowitsch { 8511502a2867SDave May PetscFunctionBegin; 8512502a2867SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 85139566063dSJacob Faibussowitsch PetscCall((dm->ops->getneighbors)(dm, nranks, ranks)); 8514502a2867SDave May PetscFunctionReturn(0); 8515502a2867SDave May } 8516502a2867SDave May 8517531c7667SBarry Smith #include <petsc/private/matimpl.h> /* Needed because of coloring->ctype below */ 8518531c7667SBarry Smith 8519531c7667SBarry Smith /* 8520531c7667SBarry Smith Converts the input vector to a ghosted vector and then calls the standard coloring code. 8521531c7667SBarry Smith This has be a different function because it requires DM which is not defined in the Mat library 8522531c7667SBarry Smith */ 8523d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringApply_AIJDM(Mat J, MatFDColoring coloring, Vec x1, void *sctx) 8524d71ae5a4SJacob Faibussowitsch { 8525531c7667SBarry Smith PetscFunctionBegin; 8526531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8527531c7667SBarry Smith Vec x1local; 8528531c7667SBarry Smith DM dm; 85299566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 85307a8be351SBarry Smith PetscCheck(dm, PetscObjectComm((PetscObject)J), PETSC_ERR_ARG_INCOMP, "IS_COLORING_LOCAL requires a DM"); 85319566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &x1local)); 85329566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, x1, INSERT_VALUES, x1local)); 85339566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, x1, INSERT_VALUES, x1local)); 8534531c7667SBarry Smith x1 = x1local; 8535531c7667SBarry Smith } 85369566063dSJacob Faibussowitsch PetscCall(MatFDColoringApply_AIJ(J, coloring, x1, sctx)); 8537531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8538531c7667SBarry Smith DM dm; 85399566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 85409566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &x1)); 8541531c7667SBarry Smith } 8542531c7667SBarry Smith PetscFunctionReturn(0); 8543531c7667SBarry Smith } 8544531c7667SBarry Smith 8545531c7667SBarry Smith /*@ 8546bb7acecfSBarry Smith MatFDColoringUseDM - allows a `MatFDColoring` object to use the `DM` associated with the matrix to compute a `IS_COLORING_LOCAL` coloring 8547531c7667SBarry Smith 8548531c7667SBarry Smith Input Parameter: 8549bb7acecfSBarry Smith . coloring - the `MatFDColoring` object 8550531c7667SBarry Smith 8551bb7acecfSBarry Smith Developer Note: 8552bb7acecfSBarry Smith this routine exists because the PETSc `Mat` library does not know about the `DM` objects 8553531c7667SBarry Smith 85541b266c99SBarry Smith Level: advanced 85551b266c99SBarry Smith 8556db781477SPatrick Sanan .seealso: `MatFDColoring`, `MatFDColoringCreate()`, `ISColoringType` 8557531c7667SBarry Smith @*/ 8558d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringUseDM(Mat coloring, MatFDColoring fdcoloring) 8559d71ae5a4SJacob Faibussowitsch { 8560531c7667SBarry Smith PetscFunctionBegin; 8561531c7667SBarry Smith coloring->ops->fdcoloringapply = MatFDColoringApply_AIJDM; 8562531c7667SBarry Smith PetscFunctionReturn(0); 8563531c7667SBarry Smith } 85648320bc6fSPatrick Sanan 85658320bc6fSPatrick Sanan /*@ 8566bb7acecfSBarry Smith DMGetCompatibility - determine if two `DM`s are compatible 85678320bc6fSPatrick Sanan 85688320bc6fSPatrick Sanan Collective 85698320bc6fSPatrick Sanan 85708320bc6fSPatrick Sanan Input Parameters: 8571bb7acecfSBarry Smith + dm1 - the first `DM` 8572bb7acecfSBarry Smith - dm2 - the second `DM` 85738320bc6fSPatrick Sanan 85748320bc6fSPatrick Sanan Output Parameters: 8575bb7acecfSBarry Smith + compatible - whether or not the two `DM`s are compatible 8576bb7acecfSBarry Smith - set - whether or not the compatible value was actually determined and set 85778320bc6fSPatrick Sanan 85788320bc6fSPatrick Sanan Notes: 8579bb7acecfSBarry Smith Two `DM`s are deemed compatible if they represent the same parallel decomposition 85803d862458SPatrick Sanan of the same topology. This implies that the section (field data) on one 85818320bc6fSPatrick Sanan "makes sense" with respect to the topology and parallel decomposition of the other. 8582bb7acecfSBarry Smith Loosely speaking, compatible `DM`s represent the same domain and parallel 85833d862458SPatrick Sanan decomposition, but hold different data. 85848320bc6fSPatrick Sanan 85858320bc6fSPatrick Sanan Typically, one would confirm compatibility if intending to simultaneously iterate 8586bb7acecfSBarry Smith over a pair of vectors obtained from different `DM`s. 85878320bc6fSPatrick Sanan 8588bb7acecfSBarry Smith For example, two `DMDA` objects are compatible if they have the same local 85898320bc6fSPatrick Sanan and global sizes and the same stencil width. They can have different numbers 85908320bc6fSPatrick Sanan of degrees of freedom per node. Thus, one could use the node numbering from 8591bb7acecfSBarry Smith either `DM` in bounds for a loop over vectors derived from either `DM`. 85928320bc6fSPatrick Sanan 8593bb7acecfSBarry Smith Consider the operation of summing data living on a 2-dof `DMDA` to data living 8594bb7acecfSBarry Smith on a 1-dof `DMDA`, which should be compatible, as in the following snippet. 85958320bc6fSPatrick Sanan .vb 85968320bc6fSPatrick Sanan ... 85979566063dSJacob Faibussowitsch PetscCall(DMGetCompatibility(da1,da2,&compatible,&set)); 85988320bc6fSPatrick Sanan if (set && compatible) { 85999566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da1,vec1,&arr1)); 86009566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da2,vec2,&arr2)); 86019566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da1,&x,&y,NULL,&m,&n,NULL)); 86028320bc6fSPatrick Sanan for (j=y; j<y+n; ++j) { 86038320bc6fSPatrick Sanan for (i=x; i<x+m, ++i) { 86048320bc6fSPatrick Sanan arr1[j][i][0] = arr2[j][i][0] + arr2[j][i][1]; 86058320bc6fSPatrick Sanan } 86068320bc6fSPatrick Sanan } 86079566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da1,vec1,&arr1)); 86089566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da2,vec2,&arr2)); 86098320bc6fSPatrick Sanan } else { 86108320bc6fSPatrick Sanan SETERRQ(PetscObjectComm((PetscObject)da1,PETSC_ERR_ARG_INCOMP,"DMDA objects incompatible"); 86118320bc6fSPatrick Sanan } 86128320bc6fSPatrick Sanan ... 86138320bc6fSPatrick Sanan .ve 86148320bc6fSPatrick Sanan 8615bb7acecfSBarry Smith Checking compatibility might be expensive for a given implementation of `DM`, 86168320bc6fSPatrick Sanan or might be impossible to unambiguously confirm or deny. For this reason, 86178320bc6fSPatrick Sanan this function may decline to determine compatibility, and hence users should 86188320bc6fSPatrick Sanan always check the "set" output parameter. 86198320bc6fSPatrick Sanan 8620bb7acecfSBarry Smith A `DM` is always compatible with itself. 86218320bc6fSPatrick Sanan 8622bb7acecfSBarry Smith In the current implementation, `DM`s which live on "unequal" communicators 86238320bc6fSPatrick Sanan (MPI_UNEQUAL in the terminology of MPI_Comm_compare()) are always deemed 86248320bc6fSPatrick Sanan incompatible. 86258320bc6fSPatrick Sanan 86268320bc6fSPatrick Sanan This function is labeled "Collective," as information about all subdomains 8627bb7acecfSBarry Smith is required on each rank. However, in `DM` implementations which store all this 86288320bc6fSPatrick Sanan information locally, this function may be merely "Logically Collective". 86298320bc6fSPatrick Sanan 8630bb7acecfSBarry Smith Developer Note: 8631bb7acecfSBarry Smith Compatibility is assumed to be a symmetric concept; `DM` A is compatible with `DM` B 86323d862458SPatrick Sanan iff B is compatible with A. Thus, this function checks the implementations 8633a5bc1bf3SBarry Smith of both dm and dmc (if they are of different types), attempting to determine 8634bb7acecfSBarry Smith compatibility. It is left to `DM` implementers to ensure that symmetry is 86358320bc6fSPatrick Sanan preserved. The simplest way to do this is, when implementing type-specific 86363d862458SPatrick Sanan logic for this function, is to check for existing logic in the implementation 8637bb7acecfSBarry Smith of other `DM` types and let *set = PETSC_FALSE if found. 86388320bc6fSPatrick Sanan 86398320bc6fSPatrick Sanan Level: advanced 86408320bc6fSPatrick Sanan 8641db781477SPatrick Sanan .seealso: `DM`, `DMDACreateCompatibleDMDA()`, `DMStagCreateCompatibleDMStag()` 86428320bc6fSPatrick Sanan @*/ 8643d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCompatibility(DM dm1, DM dm2, PetscBool *compatible, PetscBool *set) 8644d71ae5a4SJacob Faibussowitsch { 86458320bc6fSPatrick Sanan PetscMPIInt compareResult; 86468320bc6fSPatrick Sanan DMType type, type2; 86478320bc6fSPatrick Sanan PetscBool sameType; 86488320bc6fSPatrick Sanan 86498320bc6fSPatrick Sanan PetscFunctionBegin; 8650a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dm1, DM_CLASSID, 1); 86518320bc6fSPatrick Sanan PetscValidHeaderSpecific(dm2, DM_CLASSID, 2); 86528320bc6fSPatrick Sanan 86538320bc6fSPatrick Sanan /* Declare a DM compatible with itself */ 8654a5bc1bf3SBarry Smith if (dm1 == dm2) { 86558320bc6fSPatrick Sanan *set = PETSC_TRUE; 86568320bc6fSPatrick Sanan *compatible = PETSC_TRUE; 86578320bc6fSPatrick Sanan PetscFunctionReturn(0); 86588320bc6fSPatrick Sanan } 86598320bc6fSPatrick Sanan 86608320bc6fSPatrick Sanan /* Declare a DM incompatible with a DM that lives on an "unequal" 86618320bc6fSPatrick Sanan communicator. Note that this does not preclude compatibility with 86628320bc6fSPatrick Sanan DMs living on "congruent" or "similar" communicators, but this must be 86638320bc6fSPatrick Sanan determined by the implementation-specific logic */ 86649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)dm1), PetscObjectComm((PetscObject)dm2), &compareResult)); 86658320bc6fSPatrick Sanan if (compareResult == MPI_UNEQUAL) { 86668320bc6fSPatrick Sanan *set = PETSC_TRUE; 86678320bc6fSPatrick Sanan *compatible = PETSC_FALSE; 86688320bc6fSPatrick Sanan PetscFunctionReturn(0); 86698320bc6fSPatrick Sanan } 86708320bc6fSPatrick Sanan 86718320bc6fSPatrick Sanan /* Pass to the implementation-specific routine, if one exists. */ 8672a5bc1bf3SBarry Smith if (dm1->ops->getcompatibility) { 8673dbbe0bcdSBarry Smith PetscUseTypeMethod(dm1, getcompatibility, dm2, compatible, set); 8674b9d85ea2SLisandro Dalcin if (*set) PetscFunctionReturn(0); 86758320bc6fSPatrick Sanan } 86768320bc6fSPatrick Sanan 8677a5bc1bf3SBarry Smith /* If dm1 and dm2 are of different types, then attempt to check compatibility 86788320bc6fSPatrick Sanan with an implementation of this function from dm2 */ 86799566063dSJacob Faibussowitsch PetscCall(DMGetType(dm1, &type)); 86809566063dSJacob Faibussowitsch PetscCall(DMGetType(dm2, &type2)); 86819566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(type, type2, &sameType)); 86828320bc6fSPatrick Sanan if (!sameType && dm2->ops->getcompatibility) { 8683dbbe0bcdSBarry Smith PetscUseTypeMethod(dm2, getcompatibility, dm1, compatible, set); /* Note argument order */ 86848320bc6fSPatrick Sanan } else { 86858320bc6fSPatrick Sanan *set = PETSC_FALSE; 86868320bc6fSPatrick Sanan } 86878320bc6fSPatrick Sanan PetscFunctionReturn(0); 86888320bc6fSPatrick Sanan } 8689c0f0dcc3SMatthew G. Knepley 8690c0f0dcc3SMatthew G. Knepley /*@C 8691bb7acecfSBarry Smith DMMonitorSet - Sets an additional monitor function that is to be used after a solve to monitor discretization performance. 8692c0f0dcc3SMatthew G. Knepley 8693bb7acecfSBarry Smith Logically Collective on dm 8694c0f0dcc3SMatthew G. Knepley 8695c0f0dcc3SMatthew G. Knepley Input Parameters: 8696bb7acecfSBarry Smith + DM - the `DM` 8697c0f0dcc3SMatthew G. Knepley . f - the monitor function 8698c0f0dcc3SMatthew G. Knepley . mctx - [optional] user-defined context for private data for the monitor routine (use NULL if no context is desired) 8699c0f0dcc3SMatthew G. Knepley - monitordestroy - [optional] routine that frees monitor context (may be NULL) 8700c0f0dcc3SMatthew G. Knepley 8701c0f0dcc3SMatthew G. Knepley Options Database Keys: 8702bb7acecfSBarry Smith - -dm_monitor_cancel - cancels all monitors that have been hardwired into a code by calls to `DMMonitorSet()`, but 8703c0f0dcc3SMatthew G. Knepley does not cancel those set via the options database. 8704c0f0dcc3SMatthew G. Knepley 8705bb7acecfSBarry Smith Note: 8706c0f0dcc3SMatthew G. Knepley Several different monitoring routines may be set by calling 8707bb7acecfSBarry Smith `DMMonitorSet()` multiple times or with `DMMonitorSetFromOptions()`; all will be called in the 8708c0f0dcc3SMatthew G. Knepley order in which they were set. 8709c0f0dcc3SMatthew G. Knepley 8710bb7acecfSBarry Smith Fortran Note: 8711bb7acecfSBarry Smith Only a single monitor function can be set for each `DM` object 8712bb7acecfSBarry Smith 8713bb7acecfSBarry Smith Developer Note: 8714bb7acecfSBarry Smith This API has a generic name but seems specific to a very particular aspect of the use of `DM` 8715c0f0dcc3SMatthew G. Knepley 8716c0f0dcc3SMatthew G. Knepley Level: intermediate 8717c0f0dcc3SMatthew G. Knepley 8718bb7acecfSBarry Smith .seealso: `DMMonitorCancel()`, `DMMonitorSetFromOptions()`, `DMMonitor()` 8719c0f0dcc3SMatthew G. Knepley @*/ 8720d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSet(DM dm, PetscErrorCode (*f)(DM, void *), void *mctx, PetscErrorCode (*monitordestroy)(void **)) 8721d71ae5a4SJacob Faibussowitsch { 8722c0f0dcc3SMatthew G. Knepley PetscInt m; 8723c0f0dcc3SMatthew G. Knepley 8724c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8725c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8726c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 8727c0f0dcc3SMatthew G. Knepley PetscBool identical; 8728c0f0dcc3SMatthew G. Knepley 87299566063dSJacob Faibussowitsch PetscCall(PetscMonitorCompare((PetscErrorCode(*)(void))f, mctx, monitordestroy, (PetscErrorCode(*)(void))dm->monitor[m], dm->monitorcontext[m], dm->monitordestroy[m], &identical)); 8730c0f0dcc3SMatthew G. Knepley if (identical) PetscFunctionReturn(0); 8731c0f0dcc3SMatthew G. Knepley } 87327a8be351SBarry Smith PetscCheck(dm->numbermonitors < MAXDMMONITORS, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many monitors set"); 8733c0f0dcc3SMatthew G. Knepley dm->monitor[dm->numbermonitors] = f; 8734c0f0dcc3SMatthew G. Knepley dm->monitordestroy[dm->numbermonitors] = monitordestroy; 8735c0f0dcc3SMatthew G. Knepley dm->monitorcontext[dm->numbermonitors++] = (void *)mctx; 8736c0f0dcc3SMatthew G. Knepley PetscFunctionReturn(0); 8737c0f0dcc3SMatthew G. Knepley } 8738c0f0dcc3SMatthew G. Knepley 8739c0f0dcc3SMatthew G. Knepley /*@ 8740bb7acecfSBarry Smith DMMonitorCancel - Clears all the monitor functions for a `DM` object. 8741c0f0dcc3SMatthew G. Knepley 8742bb7acecfSBarry Smith Logically Collective on dm 8743c0f0dcc3SMatthew G. Knepley 8744c0f0dcc3SMatthew G. Knepley Input Parameter: 8745c0f0dcc3SMatthew G. Knepley . dm - the DM 8746c0f0dcc3SMatthew G. Knepley 8747c0f0dcc3SMatthew G. Knepley Options Database Key: 8748c0f0dcc3SMatthew G. Knepley . -dm_monitor_cancel - cancels all monitors that have been hardwired 8749bb7acecfSBarry Smith into a code by calls to `DMonitorSet()`, but does not cancel those 8750c0f0dcc3SMatthew G. Knepley set via the options database 8751c0f0dcc3SMatthew G. Knepley 8752bb7acecfSBarry Smith Note: 8753bb7acecfSBarry Smith There is no way to clear one specific monitor from a `DM` object. 8754c0f0dcc3SMatthew G. Knepley 8755c0f0dcc3SMatthew G. Knepley Level: intermediate 8756c0f0dcc3SMatthew G. Knepley 8757bb7acecfSBarry Smith .seealso: `DMMonitorSet()`, `DMMonitorSetFromOptions()`, `DMMonitor()` 8758c0f0dcc3SMatthew G. Knepley @*/ 8759d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorCancel(DM dm) 8760d71ae5a4SJacob Faibussowitsch { 8761c0f0dcc3SMatthew G. Knepley PetscInt m; 8762c0f0dcc3SMatthew G. Knepley 8763c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8764c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8765c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 87669566063dSJacob Faibussowitsch if (dm->monitordestroy[m]) PetscCall((*dm->monitordestroy[m])(&dm->monitorcontext[m])); 8767c0f0dcc3SMatthew G. Knepley } 8768c0f0dcc3SMatthew G. Knepley dm->numbermonitors = 0; 8769c0f0dcc3SMatthew G. Knepley PetscFunctionReturn(0); 8770c0f0dcc3SMatthew G. Knepley } 8771c0f0dcc3SMatthew G. Knepley 8772c0f0dcc3SMatthew G. Knepley /*@C 8773c0f0dcc3SMatthew G. Knepley DMMonitorSetFromOptions - Sets a monitor function and viewer appropriate for the type indicated by the user 8774c0f0dcc3SMatthew G. Knepley 8775bb7acecfSBarry Smith Collective on dm 8776c0f0dcc3SMatthew G. Knepley 8777c0f0dcc3SMatthew G. Knepley Input Parameters: 8778bb7acecfSBarry Smith + dm - `DM` object you wish to monitor 8779c0f0dcc3SMatthew G. Knepley . name - the monitor type one is seeking 8780c0f0dcc3SMatthew G. Knepley . help - message indicating what monitoring is done 8781c0f0dcc3SMatthew G. Knepley . manual - manual page for the monitor 8782c0f0dcc3SMatthew G. Knepley . monitor - the monitor function 8783bb7acecfSBarry Smith - monitorsetup - a function that is called once ONLY if the user selected this monitor that may set additional features of the `DM` or `PetscViewer` objects 8784c0f0dcc3SMatthew G. Knepley 8785c0f0dcc3SMatthew G. Knepley Output Parameter: 8786c0f0dcc3SMatthew G. Knepley . flg - Flag set if the monitor was created 8787c0f0dcc3SMatthew G. Knepley 8788c0f0dcc3SMatthew G. Knepley Level: developer 8789c0f0dcc3SMatthew G. Knepley 8790db781477SPatrick Sanan .seealso: `PetscOptionsGetViewer()`, `PetscOptionsGetReal()`, `PetscOptionsHasName()`, `PetscOptionsGetString()`, 8791db781477SPatrick Sanan `PetscOptionsGetIntArray()`, `PetscOptionsGetRealArray()`, `PetscOptionsBool()` 8792db781477SPatrick Sanan `PetscOptionsInt()`, `PetscOptionsString()`, `PetscOptionsReal()`, `PetscOptionsBool()`, 8793db781477SPatrick Sanan `PetscOptionsName()`, `PetscOptionsBegin()`, `PetscOptionsEnd()`, `PetscOptionsHeadBegin()`, 8794c2e3fba1SPatrick Sanan `PetscOptionsStringArray()`, `PetscOptionsRealArray()`, `PetscOptionsScalar()`, 8795db781477SPatrick Sanan `PetscOptionsBoolGroupBegin()`, `PetscOptionsBoolGroup()`, `PetscOptionsBoolGroupEnd()`, 8796bb7acecfSBarry Smith `PetscOptionsFList()`, `PetscOptionsEList()`, `DMMonitor()`, `DMMonitorSet()` 8797c0f0dcc3SMatthew G. Knepley @*/ 8798d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSetFromOptions(DM dm, const char name[], const char help[], const char manual[], PetscErrorCode (*monitor)(DM, void *), PetscErrorCode (*monitorsetup)(DM, PetscViewerAndFormat *), PetscBool *flg) 8799d71ae5a4SJacob Faibussowitsch { 8800c0f0dcc3SMatthew G. Knepley PetscViewer viewer; 8801c0f0dcc3SMatthew G. Knepley PetscViewerFormat format; 8802c0f0dcc3SMatthew G. Knepley 8803c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8804c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 88059566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetViewer(PetscObjectComm((PetscObject)dm), ((PetscObject)dm)->options, ((PetscObject)dm)->prefix, name, &viewer, &format, flg)); 8806c0f0dcc3SMatthew G. Knepley if (*flg) { 8807c0f0dcc3SMatthew G. Knepley PetscViewerAndFormat *vf; 8808c0f0dcc3SMatthew G. Knepley 88099566063dSJacob Faibussowitsch PetscCall(PetscViewerAndFormatCreate(viewer, format, &vf)); 88109566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)viewer)); 88119566063dSJacob Faibussowitsch if (monitorsetup) PetscCall((*monitorsetup)(dm, vf)); 88129566063dSJacob Faibussowitsch PetscCall(DMMonitorSet(dm, (PetscErrorCode(*)(DM, void *))monitor, vf, (PetscErrorCode(*)(void **))PetscViewerAndFormatDestroy)); 8813c0f0dcc3SMatthew G. Knepley } 8814c0f0dcc3SMatthew G. Knepley PetscFunctionReturn(0); 8815c0f0dcc3SMatthew G. Knepley } 8816c0f0dcc3SMatthew G. Knepley 8817c0f0dcc3SMatthew G. Knepley /*@ 8818c0f0dcc3SMatthew G. Knepley DMMonitor - runs the user provided monitor routines, if they exist 8819c0f0dcc3SMatthew G. Knepley 8820bb7acecfSBarry Smith Collective on dm 8821c0f0dcc3SMatthew G. Knepley 8822c0f0dcc3SMatthew G. Knepley Input Parameters: 8823bb7acecfSBarry Smith . dm - The `DM` 8824c0f0dcc3SMatthew G. Knepley 8825c0f0dcc3SMatthew G. Knepley Level: developer 8826c0f0dcc3SMatthew G. Knepley 8827bb7acecfSBarry Smith Question: 8828bb7acecfSBarry Smith Note should indicate when during the life of the `DM` the monitor is run. It appears to be related to the discretization process seems rather specialized 8829bb7acecfSBarry Smith since some `DM` have no concept of discretization 8830bb7acecfSBarry Smith 8831bb7acecfSBarry Smith .seealso: `DMMonitorSet()`, `DMMonitorSetFromOptions()` 8832c0f0dcc3SMatthew G. Knepley @*/ 8833d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitor(DM dm) 8834d71ae5a4SJacob Faibussowitsch { 8835c0f0dcc3SMatthew G. Knepley PetscInt m; 8836c0f0dcc3SMatthew G. Knepley 8837c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8838c0f0dcc3SMatthew G. Knepley if (!dm) PetscFunctionReturn(0); 8839c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 884048a46eb9SPierre Jolivet for (m = 0; m < dm->numbermonitors; ++m) PetscCall((*dm->monitor[m])(dm, dm->monitorcontext[m])); 8841c0f0dcc3SMatthew G. Knepley PetscFunctionReturn(0); 8842c0f0dcc3SMatthew G. Knepley } 88432e4af2aeSMatthew G. Knepley 88442e4af2aeSMatthew G. Knepley /*@ 8845bb7acecfSBarry Smith DMComputeError - Computes the error assuming the user has provided the exact solution functions 88462e4af2aeSMatthew G. Knepley 8847bb7acecfSBarry Smith Collective on dm 88482e4af2aeSMatthew G. Knepley 88492e4af2aeSMatthew G. Knepley Input Parameters: 8850bb7acecfSBarry Smith + dm - The `DM` 88516b867d5aSJose E. Roman - sol - The solution vector 88522e4af2aeSMatthew G. Knepley 88536b867d5aSJose E. Roman Input/Output Parameter: 88546b867d5aSJose E. Roman . errors - An array of length Nf, the number of fields, or NULL for no output; on output 88556b867d5aSJose E. Roman contains the error in each field 88566b867d5aSJose E. Roman 88576b867d5aSJose E. Roman Output Parameter: 88586b867d5aSJose E. Roman . errorVec - A vector to hold the cellwise error (may be NULL) 88592e4af2aeSMatthew G. Knepley 8860bb7acecfSBarry Smith Note: 8861bb7acecfSBarry Smith The exact solutions come from the `PetscDS` object, and the time comes from `DMGetOutputSequenceNumber()`. 88622e4af2aeSMatthew G. Knepley 88632e4af2aeSMatthew G. Knepley Level: developer 88642e4af2aeSMatthew G. Knepley 8865db781477SPatrick Sanan .seealso: `DMMonitorSet()`, `DMGetRegionNumDS()`, `PetscDSGetExactSolution()`, `DMGetOutputSequenceNumber()` 88662e4af2aeSMatthew G. Knepley @*/ 8867d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeError(DM dm, Vec sol, PetscReal errors[], Vec *errorVec) 8868d71ae5a4SJacob Faibussowitsch { 88692e4af2aeSMatthew G. Knepley PetscErrorCode (**exactSol)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *); 88702e4af2aeSMatthew G. Knepley void **ctxs; 88712e4af2aeSMatthew G. Knepley PetscReal time; 88722e4af2aeSMatthew G. Knepley PetscInt Nf, f, Nds, s; 88732e4af2aeSMatthew G. Knepley 88742e4af2aeSMatthew G. Knepley PetscFunctionBegin; 88759566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 88769566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &exactSol, Nf, &ctxs)); 88779566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 88782e4af2aeSMatthew G. Knepley for (s = 0; s < Nds; ++s) { 88792e4af2aeSMatthew G. Knepley PetscDS ds; 88802e4af2aeSMatthew G. Knepley DMLabel label; 88812e4af2aeSMatthew G. Knepley IS fieldIS; 88822e4af2aeSMatthew G. Knepley const PetscInt *fields; 88832e4af2aeSMatthew G. Knepley PetscInt dsNf; 88842e4af2aeSMatthew G. Knepley 88859566063dSJacob Faibussowitsch PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds)); 88869566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 88879566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISGetIndices(fieldIS, &fields)); 88882e4af2aeSMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 88892e4af2aeSMatthew G. Knepley const PetscInt field = fields[f]; 88909566063dSJacob Faibussowitsch PetscCall(PetscDSGetExactSolution(ds, field, &exactSol[field], &ctxs[field])); 88912e4af2aeSMatthew G. Knepley } 88929566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISRestoreIndices(fieldIS, &fields)); 88932e4af2aeSMatthew G. Knepley } 8894ad540459SPierre Jolivet for (f = 0; f < Nf; ++f) PetscCheck(exactSol[f], PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "DS must contain exact solution functions in order to calculate error, missing for field %" PetscInt_FMT, f); 88959566063dSJacob Faibussowitsch PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time)); 88969566063dSJacob Faibussowitsch if (errors) PetscCall(DMComputeL2FieldDiff(dm, time, exactSol, ctxs, sol, errors)); 88972e4af2aeSMatthew G. Knepley if (errorVec) { 88982e4af2aeSMatthew G. Knepley DM edm; 88992e4af2aeSMatthew G. Knepley DMPolytopeType ct; 89002e4af2aeSMatthew G. Knepley PetscBool simplex; 89012e4af2aeSMatthew G. Knepley PetscInt dim, cStart, Nf; 89022e4af2aeSMatthew G. Knepley 89039566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &edm)); 89049566063dSJacob Faibussowitsch PetscCall(DMGetDimension(edm, &dim)); 89059566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 89069566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 89072e4af2aeSMatthew G. Knepley simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE; 89089566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 89092e4af2aeSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 89102e4af2aeSMatthew G. Knepley PetscFE fe, efe; 89112e4af2aeSMatthew G. Knepley PetscQuadrature q; 89122e4af2aeSMatthew G. Knepley const char *name; 89132e4af2aeSMatthew G. Knepley 89149566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe)); 89159566063dSJacob Faibussowitsch PetscCall(PetscFECreateLagrange(PETSC_COMM_SELF, dim, Nf, simplex, 0, PETSC_DETERMINE, &efe)); 89169566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)fe, &name)); 89179566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)efe, name)); 89189566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 89199566063dSJacob Faibussowitsch PetscCall(PetscFESetQuadrature(efe, q)); 89209566063dSJacob Faibussowitsch PetscCall(DMSetField(edm, f, NULL, (PetscObject)efe)); 89219566063dSJacob Faibussowitsch PetscCall(PetscFEDestroy(&efe)); 89222e4af2aeSMatthew G. Knepley } 89239566063dSJacob Faibussowitsch PetscCall(DMCreateDS(edm)); 89242e4af2aeSMatthew G. Knepley 89259566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(edm, errorVec)); 89269566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*errorVec, "Error")); 89279566063dSJacob Faibussowitsch PetscCall(DMPlexComputeL2DiffVec(dm, time, exactSol, ctxs, sol, *errorVec)); 89289566063dSJacob Faibussowitsch PetscCall(DMDestroy(&edm)); 89292e4af2aeSMatthew G. Knepley } 89309566063dSJacob Faibussowitsch PetscCall(PetscFree2(exactSol, ctxs)); 89312e4af2aeSMatthew G. Knepley PetscFunctionReturn(0); 89322e4af2aeSMatthew G. Knepley } 89339a2a23afSMatthew G. Knepley 89349a2a23afSMatthew G. Knepley /*@ 8935bb7acecfSBarry Smith DMGetNumAuxiliaryVec - Get the number of auxiliary vectors associated with this `DM` 89369a2a23afSMatthew G. Knepley 89379a2a23afSMatthew G. Knepley Not collective 89389a2a23afSMatthew G. Knepley 89399a2a23afSMatthew G. Knepley Input Parameter: 8940bb7acecfSBarry Smith . dm - The `DM` 89419a2a23afSMatthew G. Knepley 89429a2a23afSMatthew G. Knepley Output Parameter: 8943a5b23f4aSJose E. Roman . numAux - The number of auxiliary data vectors 89449a2a23afSMatthew G. Knepley 89459a2a23afSMatthew G. Knepley Level: advanced 89469a2a23afSMatthew G. Knepley 8947bb7acecfSBarry Smith .seealso: `DMSetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 89489a2a23afSMatthew G. Knepley @*/ 8949d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumAuxiliaryVec(DM dm, PetscInt *numAux) 8950d71ae5a4SJacob Faibussowitsch { 89519a2a23afSMatthew G. Knepley PetscFunctionBegin; 89529a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 89539566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetSize(dm->auxData, numAux)); 89549a2a23afSMatthew G. Knepley PetscFunctionReturn(0); 89559a2a23afSMatthew G. Knepley } 89569a2a23afSMatthew G. Knepley 89579a2a23afSMatthew G. Knepley /*@ 8958ac17215fSMatthew G. Knepley DMGetAuxiliaryVec - Get the auxiliary vector for region specified by the given label and value, and equation part 89599a2a23afSMatthew G. Knepley 89609a2a23afSMatthew G. Knepley Not collective 89619a2a23afSMatthew G. Knepley 89629a2a23afSMatthew G. Knepley Input Parameters: 8963bb7acecfSBarry Smith + dm - The `DM` 8964bb7acecfSBarry Smith . label - The `DMLabel` 8965ac17215fSMatthew G. Knepley . value - The label value indicating the region 8966ac17215fSMatthew G. Knepley - part - The equation part, or 0 if unused 89679a2a23afSMatthew G. Knepley 89689a2a23afSMatthew G. Knepley Output Parameter: 8969bb7acecfSBarry Smith . aux - The `Vec` holding auxiliary field data 89709a2a23afSMatthew G. Knepley 8971bb7acecfSBarry Smith Note: 8972bb7acecfSBarry Smith If no auxiliary vector is found for this (label, value), (NULL, 0, 0) is checked as well. 897304c51a94SMatthew G. Knepley 89749a2a23afSMatthew G. Knepley Level: advanced 89759a2a23afSMatthew G. Knepley 8976bb7acecfSBarry Smith .seealso: `DMSetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryLabels()` 89779a2a23afSMatthew G. Knepley @*/ 8978d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec *aux) 8979d71ae5a4SJacob Faibussowitsch { 8980ac17215fSMatthew G. Knepley PetscHashAuxKey key, wild = {NULL, 0, 0}; 898104c51a94SMatthew G. Knepley PetscBool has; 89829a2a23afSMatthew G. Knepley 89839a2a23afSMatthew G. Knepley PetscFunctionBegin; 89849a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 89859a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 89869a2a23afSMatthew G. Knepley key.label = label; 89879a2a23afSMatthew G. Knepley key.value = value; 8988ac17215fSMatthew G. Knepley key.part = part; 89899566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxHas(dm->auxData, key, &has)); 89909566063dSJacob Faibussowitsch if (has) PetscCall(PetscHMapAuxGet(dm->auxData, key, aux)); 89919566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxGet(dm->auxData, wild, aux)); 89929a2a23afSMatthew G. Knepley PetscFunctionReturn(0); 89939a2a23afSMatthew G. Knepley } 89949a2a23afSMatthew G. Knepley 89959a2a23afSMatthew G. Knepley /*@ 8996bb7acecfSBarry Smith DMSetAuxiliaryVec - Set an auxiliary vector for region specified by the given label and value, and equation part 89979a2a23afSMatthew G. Knepley 8998bb7acecfSBarry Smith Not collective because auxilary vectors are not parallel 89999a2a23afSMatthew G. Knepley 90009a2a23afSMatthew G. Knepley Input Parameters: 9001bb7acecfSBarry Smith + dm - The `DM` 9002bb7acecfSBarry Smith . label - The `DMLabel` 90039a2a23afSMatthew G. Knepley . value - The label value indicating the region 9004ac17215fSMatthew G. Knepley . part - The equation part, or 0 if unused 9005bb7acecfSBarry Smith - aux - The `Vec` holding auxiliary field data 90069a2a23afSMatthew G. Knepley 90079a2a23afSMatthew G. Knepley Level: advanced 90089a2a23afSMatthew G. Knepley 9009bb7acecfSBarry Smith .seealso: `DMGetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMCopyAuxiliaryVec()` 90109a2a23afSMatthew G. Knepley @*/ 9011d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec aux) 9012d71ae5a4SJacob Faibussowitsch { 90139a2a23afSMatthew G. Knepley Vec old; 90149a2a23afSMatthew G. Knepley PetscHashAuxKey key; 90159a2a23afSMatthew G. Knepley 90169a2a23afSMatthew G. Knepley PetscFunctionBegin; 90179a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 90189a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 90199a2a23afSMatthew G. Knepley key.label = label; 90209a2a23afSMatthew G. Knepley key.value = value; 9021ac17215fSMatthew G. Knepley key.part = part; 90229566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGet(dm->auxData, key, &old)); 90239566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)aux)); 90249566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)old)); 90259566063dSJacob Faibussowitsch if (!aux) PetscCall(PetscHMapAuxDel(dm->auxData, key)); 90269566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxSet(dm->auxData, key, aux)); 90279a2a23afSMatthew G. Knepley PetscFunctionReturn(0); 90289a2a23afSMatthew G. Knepley } 90299a2a23afSMatthew G. Knepley 90309a2a23afSMatthew G. Knepley /*@C 9031bb7acecfSBarry Smith DMGetAuxiliaryLabels - Get the labels, values, and parts for all auxiliary vectors in this `DM` 90329a2a23afSMatthew G. Knepley 90339a2a23afSMatthew G. Knepley Not collective 90349a2a23afSMatthew G. Knepley 90359a2a23afSMatthew G. Knepley Input Parameter: 9036bb7acecfSBarry Smith . dm - The `DM` 90379a2a23afSMatthew G. Knepley 90389a2a23afSMatthew G. Knepley Output Parameters: 9039bb7acecfSBarry Smith + labels - The `DMLabel`s for each `Vec` 9040bb7acecfSBarry Smith . values - The label values for each `Vec` 9041bb7acecfSBarry Smith - parts - The equation parts for each `Vec` 90429a2a23afSMatthew G. Knepley 9043bb7acecfSBarry Smith Note: 9044bb7acecfSBarry Smith The arrays passed in must be at least as large as `DMGetNumAuxiliaryVec()`. 90459a2a23afSMatthew G. Knepley 90469a2a23afSMatthew G. Knepley Level: advanced 90479a2a23afSMatthew G. Knepley 9048bb7acecfSBarry Smith .seealso: `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMSetAuxiliaryVec()`, DMCopyAuxiliaryVec()` 90499a2a23afSMatthew G. Knepley @*/ 9050d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryLabels(DM dm, DMLabel labels[], PetscInt values[], PetscInt parts[]) 9051d71ae5a4SJacob Faibussowitsch { 90529a2a23afSMatthew G. Knepley PetscHashAuxKey *keys; 90539a2a23afSMatthew G. Knepley PetscInt n, i, off = 0; 90549a2a23afSMatthew G. Knepley 90559a2a23afSMatthew G. Knepley PetscFunctionBegin; 90569a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 90579a2a23afSMatthew G. Knepley PetscValidPointer(labels, 2); 9058dadcf809SJacob Faibussowitsch PetscValidIntPointer(values, 3); 9059dadcf809SJacob Faibussowitsch PetscValidIntPointer(parts, 4); 90609566063dSJacob Faibussowitsch PetscCall(DMGetNumAuxiliaryVec(dm, &n)); 90619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &keys)); 90629566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetKeys(dm->auxData, &off, keys)); 90639371c9d4SSatish Balay for (i = 0; i < n; ++i) { 90649371c9d4SSatish Balay labels[i] = keys[i].label; 90659371c9d4SSatish Balay values[i] = keys[i].value; 90669371c9d4SSatish Balay parts[i] = keys[i].part; 90679371c9d4SSatish Balay } 90689566063dSJacob Faibussowitsch PetscCall(PetscFree(keys)); 90699a2a23afSMatthew G. Knepley PetscFunctionReturn(0); 90709a2a23afSMatthew G. Knepley } 90719a2a23afSMatthew G. Knepley 90729a2a23afSMatthew G. Knepley /*@ 9073bb7acecfSBarry Smith DMCopyAuxiliaryVec - Copy the auxiliary vector data on a `DM` to a new `DM` 90749a2a23afSMatthew G. Knepley 90759a2a23afSMatthew G. Knepley Not collective 90769a2a23afSMatthew G. Knepley 90779a2a23afSMatthew G. Knepley Input Parameter: 9078bb7acecfSBarry Smith . dm - The `DM` 90799a2a23afSMatthew G. Knepley 90809a2a23afSMatthew G. Knepley Output Parameter: 9081bb7acecfSBarry Smith . dmNew - The new `DM`, now with the same auxiliary data 90829a2a23afSMatthew G. Knepley 90839a2a23afSMatthew G. Knepley Level: advanced 90849a2a23afSMatthew G. Knepley 9085bb7acecfSBarry Smith Note: 9086bb7acecfSBarry Smith This is a shallow copy of the auxiliary vectors 9087bb7acecfSBarry Smith 9088db781477SPatrick Sanan .seealso: `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 90899a2a23afSMatthew G. Knepley @*/ 9090d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyAuxiliaryVec(DM dm, DM dmNew) 9091d71ae5a4SJacob Faibussowitsch { 90929a2a23afSMatthew G. Knepley PetscFunctionBegin; 90939a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 90949566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDestroy(&dmNew->auxData)); 90959566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDuplicate(dm->auxData, &dmNew->auxData)); 90969a2a23afSMatthew G. Knepley PetscFunctionReturn(0); 90979a2a23afSMatthew G. Knepley } 9098b5a892a1SMatthew G. Knepley 9099b5a892a1SMatthew G. Knepley /*@C 9100bb7acecfSBarry Smith DMPolytopeMatchOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9101b5a892a1SMatthew G. Knepley 9102b5a892a1SMatthew G. Knepley Not collective 9103b5a892a1SMatthew G. Knepley 9104b5a892a1SMatthew G. Knepley Input Parameters: 9105bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9106b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9107b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9108b5a892a1SMatthew G. Knepley 9109b5a892a1SMatthew G. Knepley Output Parameters: 9110bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9111b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9112b5a892a1SMatthew G. Knepley 9113b5a892a1SMatthew G. Knepley Level: advanced 9114b5a892a1SMatthew G. Knepley 9115bb7acecfSBarry Smith Note: 9116bb7acecfSBarry Smith An arrangement is a face order combined with an orientation for each face 9117bb7acecfSBarry Smith 9118bb7acecfSBarry Smith Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangments(ct)`/2 to `DMPolytopeTypeGetNumArrangments(ct)`/2 9119bb7acecfSBarry Smith that labels each arrangement (face ordering plus orientation for each face). 9120bb7acecfSBarry Smith 9121bb7acecfSBarry Smith See `DMPolytopeMatchVertexOrientation()` to find a new vertex orientation that takes the source vertex arrangement to the target vertex arrangement 9122bb7acecfSBarry Smith 9123bb7acecfSBarry Smith .seealso: `DMPolytopeGetOrientation()`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetVertexOrientation()` 9124b5a892a1SMatthew G. Knepley @*/ 9125d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt, PetscBool *found) 9126d71ae5a4SJacob Faibussowitsch { 9127b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetConeSize(ct); 9128b5a892a1SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangments(ct) / 2; 9129b5a892a1SMatthew G. Knepley PetscInt o, c; 9130b5a892a1SMatthew G. Knepley 9131b5a892a1SMatthew G. Knepley PetscFunctionBegin; 91329371c9d4SSatish Balay if (!nO) { 91339371c9d4SSatish Balay *ornt = 0; 91349371c9d4SSatish Balay *found = PETSC_TRUE; 91359371c9d4SSatish Balay PetscFunctionReturn(0); 91369371c9d4SSatish Balay } 9137b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 9138b5a892a1SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangment(ct, o); 9139b5a892a1SMatthew G. Knepley 91409371c9d4SSatish Balay for (c = 0; c < cS; ++c) 91419371c9d4SSatish Balay if (sourceCone[arr[c * 2]] != targetCone[c]) break; 91429371c9d4SSatish Balay if (c == cS) { 91439371c9d4SSatish Balay *ornt = o; 91449371c9d4SSatish Balay break; 91459371c9d4SSatish Balay } 9146b5a892a1SMatthew G. Knepley } 9147b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 9148b5a892a1SMatthew G. Knepley PetscFunctionReturn(0); 9149b5a892a1SMatthew G. Knepley } 9150b5a892a1SMatthew G. Knepley 9151b5a892a1SMatthew G. Knepley /*@C 9152bb7acecfSBarry Smith DMPolytopeGetOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9153b5a892a1SMatthew G. Knepley 9154b5a892a1SMatthew G. Knepley Not collective 9155b5a892a1SMatthew G. Knepley 9156b5a892a1SMatthew G. Knepley Input Parameters: 9157bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9158b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9159b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9160b5a892a1SMatthew G. Knepley 9161b5a892a1SMatthew G. Knepley Output Parameters: 9162bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9163b5a892a1SMatthew G. Knepley 9164b5a892a1SMatthew G. Knepley Level: advanced 9165b5a892a1SMatthew G. Knepley 9166bb7acecfSBarry Smith Note: 9167bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchOrientation()` except it will generate an error if no suitable orientation can be found. 9168bb7acecfSBarry Smith 9169bb7acecfSBarry Smith Developer Note: 9170bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchOrientation()` and error if none is found 9171bb7acecfSBarry Smith 9172bb7acecfSBarry Smith .seealso: `DMPolytopeType`, `DMPolytopeMatchOrientation()`, `DMPolytopeGetVertexOrientation()`, `DMPolytopeMatchVertexOrientation()` 9173b5a892a1SMatthew G. Knepley @*/ 9174d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9175d71ae5a4SJacob Faibussowitsch { 9176b5a892a1SMatthew G. Knepley PetscBool found; 9177b5a892a1SMatthew G. Knepley 9178b5a892a1SMatthew G. Knepley PetscFunctionBegin; 91799566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchOrientation(ct, sourceCone, targetCone, ornt, &found)); 91807a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 9181b5a892a1SMatthew G. Knepley PetscFunctionReturn(0); 9182b5a892a1SMatthew G. Knepley } 9183b5a892a1SMatthew G. Knepley 9184b5a892a1SMatthew G. Knepley /*@C 9185bb7acecfSBarry Smith DMPolytopeMatchVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9186b5a892a1SMatthew G. Knepley 9187b5a892a1SMatthew G. Knepley Not collective 9188b5a892a1SMatthew G. Knepley 9189b5a892a1SMatthew G. Knepley Input Parameters: 9190bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9191b5a892a1SMatthew G. Knepley . sourceVert - The source arrangement of vertices 9192b5a892a1SMatthew G. Knepley - targetVert - The target arrangement of vertices 9193b5a892a1SMatthew G. Knepley 9194b5a892a1SMatthew G. Knepley Output Parameters: 9195bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9196b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9197b5a892a1SMatthew G. Knepley 9198b5a892a1SMatthew G. Knepley Level: advanced 9199b5a892a1SMatthew G. Knepley 9200bb7acecfSBarry Smith Note: 9201bb7acecfSBarry Smith An arrangement is a vertex order 9202bb7acecfSBarry Smith 9203bb7acecfSBarry Smith Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangments(ct)`/2 to `DMPolytopeTypeGetNumArrangments(ct)`/2 9204bb7acecfSBarry Smith that labels each arrangement (vertex ordering). 9205bb7acecfSBarry Smith 9206bb7acecfSBarry Smith See `DMPolytopeMatchOrientation()` to find a new face orientation that takes the source face arrangement to the target face arrangement 9207bb7acecfSBarry Smith 9208bb7acecfSBarry Smith .seealso: `DMPolytopeType`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchOrientation()`, `DMPolytopeTypeGetNumVertices()`, `DMPolytopeTypeGetVertexArrangment()` 9209b5a892a1SMatthew G. Knepley @*/ 9210d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchVertexOrientation(DMPolytopeType ct, const PetscInt sourceVert[], const PetscInt targetVert[], PetscInt *ornt, PetscBool *found) 9211d71ae5a4SJacob Faibussowitsch { 9212b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetNumVertices(ct); 9213b5a892a1SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangments(ct) / 2; 9214b5a892a1SMatthew G. Knepley PetscInt o, c; 9215b5a892a1SMatthew G. Knepley 9216b5a892a1SMatthew G. Knepley PetscFunctionBegin; 92179371c9d4SSatish Balay if (!nO) { 92189371c9d4SSatish Balay *ornt = 0; 92199371c9d4SSatish Balay *found = PETSC_TRUE; 92209371c9d4SSatish Balay PetscFunctionReturn(0); 92219371c9d4SSatish Balay } 9222b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 9223b5a892a1SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetVertexArrangment(ct, o); 9224b5a892a1SMatthew G. Knepley 92259371c9d4SSatish Balay for (c = 0; c < cS; ++c) 92269371c9d4SSatish Balay if (sourceVert[arr[c]] != targetVert[c]) break; 92279371c9d4SSatish Balay if (c == cS) { 92289371c9d4SSatish Balay *ornt = o; 92299371c9d4SSatish Balay break; 92309371c9d4SSatish Balay } 9231b5a892a1SMatthew G. Knepley } 9232b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 9233b5a892a1SMatthew G. Knepley PetscFunctionReturn(0); 9234b5a892a1SMatthew G. Knepley } 9235b5a892a1SMatthew G. Knepley 9236b5a892a1SMatthew G. Knepley /*@C 9237bb7acecfSBarry Smith DMPolytopeGetVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9238b5a892a1SMatthew G. Knepley 9239b5a892a1SMatthew G. Knepley Not collective 9240b5a892a1SMatthew G. Knepley 9241b5a892a1SMatthew G. Knepley Input Parameters: 9242bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9243b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of vertices 9244b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of vertices 9245b5a892a1SMatthew G. Knepley 9246b5a892a1SMatthew G. Knepley Output Parameters: 9247bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9248b5a892a1SMatthew G. Knepley 9249b5a892a1SMatthew G. Knepley Level: advanced 9250b5a892a1SMatthew G. Knepley 9251bb7acecfSBarry Smith Note: 9252bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchVertexOrientation()` except it errors if not orientation is possible. 9253bb7acecfSBarry Smith 9254bb7acecfSBarry Smith Developer Note: 9255bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchVertexOrientation()` and error if none is found 9256bb7acecfSBarry Smith 9257bb7acecfSBarry Smith .seealso: `DMPolytopeType`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetOrientation()` 9258b5a892a1SMatthew G. Knepley @*/ 9259d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetVertexOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9260d71ae5a4SJacob Faibussowitsch { 9261b5a892a1SMatthew G. Knepley PetscBool found; 9262b5a892a1SMatthew G. Knepley 9263b5a892a1SMatthew G. Knepley PetscFunctionBegin; 92649566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchVertexOrientation(ct, sourceCone, targetCone, ornt, &found)); 92657a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 9266b5a892a1SMatthew G. Knepley PetscFunctionReturn(0); 9267b5a892a1SMatthew G. Knepley } 9268012bc364SMatthew G. Knepley 9269012bc364SMatthew G. Knepley /*@C 9270012bc364SMatthew G. Knepley DMPolytopeInCellTest - Check whether a point lies inside the reference cell of given type 9271012bc364SMatthew G. Knepley 9272012bc364SMatthew G. Knepley Not collective 9273012bc364SMatthew G. Knepley 9274012bc364SMatthew G. Knepley Input Parameters: 9275bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9276012bc364SMatthew G. Knepley - point - Coordinates of the point 9277012bc364SMatthew G. Knepley 9278012bc364SMatthew G. Knepley Output Parameters: 9279012bc364SMatthew G. Knepley . inside - Flag indicating whether the point is inside the reference cell of given type 9280012bc364SMatthew G. Knepley 9281012bc364SMatthew G. Knepley Level: advanced 9282012bc364SMatthew G. Knepley 9283bb7acecfSBarry Smith .seealso: `DM`, `DMPolytopeType`, `DMLocatePoints()` 9284012bc364SMatthew G. Knepley @*/ 9285d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeInCellTest(DMPolytopeType ct, const PetscReal point[], PetscBool *inside) 9286d71ae5a4SJacob Faibussowitsch { 9287012bc364SMatthew G. Knepley PetscReal sum = 0.0; 9288012bc364SMatthew G. Knepley PetscInt d; 9289012bc364SMatthew G. Knepley 9290012bc364SMatthew G. Knepley PetscFunctionBegin; 9291012bc364SMatthew G. Knepley *inside = PETSC_TRUE; 9292012bc364SMatthew G. Knepley switch (ct) { 9293012bc364SMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 9294012bc364SMatthew G. Knepley case DM_POLYTOPE_TETRAHEDRON: 9295012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) { 92969371c9d4SSatish Balay if (point[d] < -1.0) { 92979371c9d4SSatish Balay *inside = PETSC_FALSE; 92989371c9d4SSatish Balay break; 92999371c9d4SSatish Balay } 9300012bc364SMatthew G. Knepley sum += point[d]; 9301012bc364SMatthew G. Knepley } 93029371c9d4SSatish Balay if (sum > PETSC_SMALL) { 93039371c9d4SSatish Balay *inside = PETSC_FALSE; 93049371c9d4SSatish Balay break; 93059371c9d4SSatish Balay } 9306012bc364SMatthew G. Knepley break; 9307012bc364SMatthew G. Knepley case DM_POLYTOPE_QUADRILATERAL: 9308012bc364SMatthew G. Knepley case DM_POLYTOPE_HEXAHEDRON: 9309012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) 93109371c9d4SSatish Balay if (PetscAbsReal(point[d]) > 1. + PETSC_SMALL) { 93119371c9d4SSatish Balay *inside = PETSC_FALSE; 9312012bc364SMatthew G. Knepley break; 93139371c9d4SSatish Balay } 93149371c9d4SSatish Balay break; 9315d71ae5a4SJacob Faibussowitsch default: 9316d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported polytope type %s", DMPolytopeTypes[ct]); 9317012bc364SMatthew G. Knepley } 9318012bc364SMatthew G. Knepley PetscFunctionReturn(0); 9319012bc364SMatthew G. Knepley } 9320