xref: /petsc/src/dm/interface/dm.c (revision 8c1c0954f5d17f3b4df475e39fa2544776fb1042)
1d0295fc0SJunchao Zhang #include <petscvec.h>
2af0996ceSBarry Smith #include <petsc/private/dmimpl.h>      /*I      "petscdm.h"          I*/
3c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I      "petscdmlabel.h"     I*/
4e6f8dbb6SToby Isaac #include <petsc/private/petscdsimpl.h> /*I      "petscds.h"     I*/
53e922f36SToby Isaac #include <petscdmplex.h>
6d2b2dc1eSMatthew G. Knepley #include <petscdmceed.h>
7f19dbd58SToby Isaac #include <petscdmfield.h>
80c312b8eSJed Brown #include <petscsf.h>
92764a2aaSMatthew G. Knepley #include <petscds.h>
1047c6ae99SBarry Smith 
11f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED
12f918ec44SMatthew G. Knepley   #include <petscfeceed.h>
13f918ec44SMatthew G. Knepley #endif
14f918ec44SMatthew G. Knepley 
15cea3dcb8SSatish Balay #if !defined(PETSC_HAVE_WINDOWS_COMPILERS)
16cea3dcb8SSatish Balay   #include <petsc/private/valgrind/memcheck.h>
1700d952a4SJed Brown #endif
1800d952a4SJed Brown 
19732e2eb9SMatthew G Knepley PetscClassId DM_CLASSID;
20d67d17b1SMatthew G. Knepley PetscClassId DMLABEL_CLASSID;
21708be2fdSJed Brown PetscLogEvent DM_Convert, DM_GlobalToLocal, DM_LocalToGlobal, DM_LocalToLocal, DM_LocatePoints, DM_Coarsen, DM_Refine, DM_CreateInterpolation, DM_CreateRestriction, DM_CreateInjection, DM_CreateMatrix, DM_CreateMassMatrix, DM_Load, DM_AdaptInterpolator, DM_ProjectFunction;
2267a56275SMatthew G Knepley 
23ea78f98cSLisandro Dalcin const char *const DMBoundaryTypes[]          = {"NONE", "GHOSTED", "MIRROR", "PERIODIC", "TWIST", "DMBoundaryType", "DM_BOUNDARY_", NULL};
24d1b3049bSMatthew G. Knepley const char *const DMBoundaryConditionTypes[] = {"INVALID", "ESSENTIAL", "NATURAL", "INVALID", "INVALID", "ESSENTIAL_FIELD", "NATURAL_FIELD", "INVALID", "INVALID", "ESSENTIAL_BD_FIELD", "NATURAL_RIEMANN", "DMBoundaryConditionType", "DM_BC_", NULL};
250e762ea3SJed Brown const char *const DMBlockingTypes[]          = {"TOPOLOGICAL_POINT", "FIELD_NODE", "DMBlockingType", "DM_BLOCKING_", NULL};
26476787b7SMatthew G. Knepley const char *const DMPolytopeTypes[] =
27476787b7SMatthew G. Knepley   {"vertex",  "segment",      "tensor_segment", "triangle", "quadrilateral",  "tensor_quad",  "tetrahedron", "hexahedron", "triangular_prism", "tensor_triangular_prism", "tensor_quadrilateral_prism", "pyramid", "FV_ghost_cell", "interior_ghost_cell",
28476787b7SMatthew G. Knepley    "unknown", "unknown_cell", "unknown_face",   "invalid",  "DMPolytopeType", "DM_POLYTOPE_", NULL};
292cbb9b06SVaclav Hapla const char *const DMCopyLabelsModes[] = {"replace", "keep", "fail", "DMCopyLabelsMode", "DM_COPY_LABELS_", NULL};
3060c22052SBarry Smith 
31a4121054SBarry Smith /*@
32bb7acecfSBarry Smith   DMCreate - Creates an empty `DM` object. `DM`s are the abstract objects in PETSc that mediate between meshes and discretizations and the
33bb7acecfSBarry Smith   algebraic solvers, time integrators, and optimization algorithms.
34a4121054SBarry Smith 
35d083f849SBarry Smith   Collective
36a4121054SBarry Smith 
37a4121054SBarry Smith   Input Parameter:
38bb7acecfSBarry Smith . comm - The communicator for the `DM` object
39a4121054SBarry Smith 
40a4121054SBarry Smith   Output Parameter:
41bb7acecfSBarry Smith . dm - The `DM` object
42a4121054SBarry Smith 
43a4121054SBarry Smith   Level: beginner
44a4121054SBarry Smith 
45bb7acecfSBarry Smith   Notes:
46bb7acecfSBarry Smith   See `DMType` for a brief summary of available `DM`.
47bb7acecfSBarry Smith 
48bb7acecfSBarry Smith   The type must then be set with `DMSetType()`. If you never call `DMSetType()` it will generate an
49bb7acecfSBarry Smith   error when you try to use the dm.
50bb7acecfSBarry Smith 
511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMType`, `DMDACreate()`, `DMDA`, `DMSLICED`, `DMCOMPOSITE`, `DMPLEX`, `DMMOAB`, `DMNETWORK`
52a4121054SBarry Smith @*/
53d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreate(MPI_Comm comm, DM *dm)
54d71ae5a4SJacob Faibussowitsch {
55a4121054SBarry Smith   DM      v;
56e5e52638SMatthew G. Knepley   PetscDS ds;
57a4121054SBarry Smith 
58a4121054SBarry Smith   PetscFunctionBegin;
594f572ea9SToby Isaac   PetscAssertPointer(dm, 2);
60377f809aSBarry Smith 
619566063dSJacob Faibussowitsch   PetscCall(DMInitializePackage());
629566063dSJacob Faibussowitsch   PetscCall(PetscHeaderCreate(v, DM_CLASSID, "DM", "Distribution Manager", "DM", comm, DMDestroy, DMView));
6362e5d2d2SJDBetteridge   ((PetscObject)v)->non_cyclic_references = &DMCountNonCyclicReferences;
6449be4549SMatthew G. Knepley   v->setupcalled                          = PETSC_FALSE;
6549be4549SMatthew G. Knepley   v->setfromoptionscalled                 = PETSC_FALSE;
660298fd71SBarry Smith   v->ltogmap                              = NULL;
67a4ea9b21SRichard Tran Mills   v->bind_below                           = 0;
681411c6eeSJed Brown   v->bs                                   = 1;
69171400e9SBarry Smith   v->coloringtype                         = IS_COLORING_GLOBAL;
709566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &v->sf));
719566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &v->sectionSF));
72c58f1c22SToby Isaac   v->labels                    = NULL;
7334aa8a36SMatthew G. Knepley   v->adjacency[0]              = PETSC_FALSE;
7434aa8a36SMatthew G. Knepley   v->adjacency[1]              = PETSC_TRUE;
75c58f1c22SToby Isaac   v->depthLabel                = NULL;
76ba2698f1SMatthew G. Knepley   v->celltypeLabel             = NULL;
771bb6d2a8SBarry Smith   v->localSection              = NULL;
781bb6d2a8SBarry Smith   v->globalSection             = NULL;
793b8ba7d1SJed Brown   v->defaultConstraint.section = NULL;
803b8ba7d1SJed Brown   v->defaultConstraint.mat     = NULL;
8179769bd5SJed Brown   v->defaultConstraint.bias    = NULL;
826858538eSMatthew G. Knepley   v->coordinates[0].dim        = PETSC_DEFAULT;
836858538eSMatthew G. Knepley   v->coordinates[1].dim        = PETSC_DEFAULT;
846858538eSMatthew G. Knepley   v->sparseLocalize            = PETSC_TRUE;
8596173672SStefano Zampini   v->dim                       = PETSC_DETERMINE;
86435a35e8SMatthew G Knepley   {
87435a35e8SMatthew G Knepley     PetscInt i;
88435a35e8SMatthew G Knepley     for (i = 0; i < 10; ++i) {
890298fd71SBarry Smith       v->nullspaceConstructors[i]     = NULL;
90f9d4088aSMatthew G. Knepley       v->nearnullspaceConstructors[i] = NULL;
91435a35e8SMatthew G Knepley     }
92435a35e8SMatthew G Knepley   }
939566063dSJacob Faibussowitsch   PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds));
9407218a29SMatthew G. Knepley   PetscCall(DMSetRegionDS(v, NULL, NULL, ds, NULL));
959566063dSJacob Faibussowitsch   PetscCall(PetscDSDestroy(&ds));
969566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxCreate(&v->auxData));
9714f150ffSMatthew G. Knepley   v->dmBC              = NULL;
98a8fb8f29SToby Isaac   v->coarseMesh        = NULL;
99f4d763aaSMatthew G. Knepley   v->outputSequenceNum = -1;
100cdb7a50dSMatthew G. Knepley   v->outputSequenceVal = 0.0;
1019566063dSJacob Faibussowitsch   PetscCall(DMSetVecType(v, VECSTANDARD));
1029566063dSJacob Faibussowitsch   PetscCall(DMSetMatType(v, MATAIJ));
1034a7a4c06SLawrence Mitchell 
1041411c6eeSJed Brown   *dm = v;
1053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
106a4121054SBarry Smith }
107a4121054SBarry Smith 
10838221697SMatthew G. Knepley /*@
109bb7acecfSBarry Smith   DMClone - Creates a `DM` object with the same topology as the original.
11038221697SMatthew G. Knepley 
111d083f849SBarry Smith   Collective
11238221697SMatthew G. Knepley 
11338221697SMatthew G. Knepley   Input Parameter:
114bb7acecfSBarry Smith . dm - The original `DM` object
11538221697SMatthew G. Knepley 
11638221697SMatthew G. Knepley   Output Parameter:
117bb7acecfSBarry Smith . newdm - The new `DM` object
11838221697SMatthew G. Knepley 
11938221697SMatthew G. Knepley   Level: beginner
12038221697SMatthew G. Knepley 
1211cb8cacdSPatrick Sanan   Notes:
122bb7acecfSBarry Smith   For some `DM` implementations this is a shallow clone, the result of which may share (reference counted) information with its parent. For example,
123bb7acecfSBarry Smith   `DMClone()` applied to a `DMPLEX` object will result in a new `DMPLEX` that shares the topology with the original `DMPLEX`. It does not
124bb7acecfSBarry Smith   share the `PetscSection` of the original `DM`.
1251bb6d2a8SBarry Smith 
126bb7acecfSBarry Smith   The clone is considered set up if the original has been set up.
12789706ed2SPatrick Sanan 
128bb7acecfSBarry Smith   Use `DMConvert()` for a general way to create new `DM` from a given `DM`
129bb7acecfSBarry Smith 
13060225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMSetType()`, `DMSetLocalSection()`, `DMSetGlobalSection()`, `DMPLEX`, `DMConvert()`
13138221697SMatthew G. Knepley @*/
132d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClone(DM dm, DM *newdm)
133d71ae5a4SJacob Faibussowitsch {
13438221697SMatthew G. Knepley   PetscSF              sf;
13538221697SMatthew G. Knepley   Vec                  coords;
13638221697SMatthew G. Knepley   void                *ctx;
137ec196627SMatthew G. Knepley   MatOrderingType      otype;
138ec196627SMatthew G. Knepley   DMReorderDefaultFlag flg;
1396858538eSMatthew G. Knepley   PetscInt             dim, cdim, i;
14038221697SMatthew G. Knepley 
14138221697SMatthew G. Knepley   PetscFunctionBegin;
14238221697SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1434f572ea9SToby Isaac   PetscAssertPointer(newdm, 2);
1449566063dSJacob Faibussowitsch   PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), newdm));
1459566063dSJacob Faibussowitsch   PetscCall(DMCopyLabels(dm, *newdm, PETSC_COPY_VALUES, PETSC_TRUE, DM_COPY_LABELS_FAIL));
146ddf8437dSMatthew G. Knepley   (*newdm)->leveldown     = dm->leveldown;
147ddf8437dSMatthew G. Knepley   (*newdm)->levelup       = dm->levelup;
148c8a6034eSMark   (*newdm)->prealloc_only = dm->prealloc_only;
149fc214432SJed Brown   (*newdm)->prealloc_skip = dm->prealloc_skip;
1509566063dSJacob Faibussowitsch   PetscCall(PetscFree((*newdm)->vectype));
1519566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*newdm)->vectype));
1529566063dSJacob Faibussowitsch   PetscCall(PetscFree((*newdm)->mattype));
1539566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*newdm)->mattype));
1549566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
1559566063dSJacob Faibussowitsch   PetscCall(DMSetDimension(*newdm, dim));
156dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, clone, newdm);
1573f22bcbcSToby Isaac   (*newdm)->setupcalled = dm->setupcalled;
1589566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sf));
1599566063dSJacob Faibussowitsch   PetscCall(DMSetPointSF(*newdm, sf));
1609566063dSJacob Faibussowitsch   PetscCall(DMGetApplicationContext(dm, &ctx));
1619566063dSJacob Faibussowitsch   PetscCall(DMSetApplicationContext(*newdm, ctx));
162ec196627SMatthew G. Knepley   PetscCall(DMReorderSectionGetDefault(dm, &flg));
163ec196627SMatthew G. Knepley   PetscCall(DMReorderSectionSetDefault(*newdm, flg));
164ec196627SMatthew G. Knepley   PetscCall(DMReorderSectionGetType(dm, &otype));
165ec196627SMatthew G. Knepley   PetscCall(DMReorderSectionSetType(*newdm, otype));
1666858538eSMatthew G. Knepley   for (i = 0; i < 2; ++i) {
1676858538eSMatthew G. Knepley     if (dm->coordinates[i].dm) {
168be4c1c3eSMatthew G. Knepley       DM           ncdm;
169be4c1c3eSMatthew G. Knepley       PetscSection cs;
1705a0206caSToby Isaac       PetscInt     pEnd = -1, pEndMax = -1;
171be4c1c3eSMatthew G. Knepley 
1726858538eSMatthew G. Knepley       PetscCall(DMGetLocalSection(dm->coordinates[i].dm, &cs));
1739566063dSJacob Faibussowitsch       if (cs) PetscCall(PetscSectionGetChart(cs, NULL, &pEnd));
174712fec58SPierre Jolivet       PetscCall(MPIU_Allreduce(&pEnd, &pEndMax, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm)));
1755a0206caSToby Isaac       if (pEndMax >= 0) {
1766858538eSMatthew G. Knepley         PetscCall(DMClone(dm->coordinates[i].dm, &ncdm));
1776858538eSMatthew G. Knepley         PetscCall(DMCopyDisc(dm->coordinates[i].dm, ncdm));
1789566063dSJacob Faibussowitsch         PetscCall(DMSetLocalSection(ncdm, cs));
1795e50ca95SJames Wright         if (dm->coordinates[i].dm->periodic.setup) {
1805e50ca95SJames Wright           ncdm->periodic.setup = dm->coordinates[i].dm->periodic.setup;
1815e50ca95SJames Wright           PetscCall(ncdm->periodic.setup(ncdm));
1825e50ca95SJames Wright         }
1836858538eSMatthew G. Knepley         if (i) PetscCall(DMSetCellCoordinateDM(*newdm, ncdm));
1846858538eSMatthew G. Knepley         else PetscCall(DMSetCoordinateDM(*newdm, ncdm));
1859566063dSJacob Faibussowitsch         PetscCall(DMDestroy(&ncdm));
186be4c1c3eSMatthew G. Knepley       }
187be4c1c3eSMatthew G. Knepley     }
1886858538eSMatthew G. Knepley   }
1899566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
1909566063dSJacob Faibussowitsch   PetscCall(DMSetCoordinateDim(*newdm, cdim));
1919566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinatesLocal(dm, &coords));
19238221697SMatthew G. Knepley   if (coords) {
1939566063dSJacob Faibussowitsch     PetscCall(DMSetCoordinatesLocal(*newdm, coords));
19438221697SMatthew G. Knepley   } else {
1959566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinates(dm, &coords));
1969566063dSJacob Faibussowitsch     if (coords) PetscCall(DMSetCoordinates(*newdm, coords));
19738221697SMatthew G. Knepley   }
1986858538eSMatthew G. Knepley   PetscCall(DMGetCellCoordinatesLocal(dm, &coords));
1996858538eSMatthew G. Knepley   if (coords) {
2006858538eSMatthew G. Knepley     PetscCall(DMSetCellCoordinatesLocal(*newdm, coords));
2016858538eSMatthew G. Knepley   } else {
2026858538eSMatthew G. Knepley     PetscCall(DMGetCellCoordinates(dm, &coords));
2036858538eSMatthew G. Knepley     if (coords) PetscCall(DMSetCellCoordinates(*newdm, coords));
2046858538eSMatthew G. Knepley   }
20590b157c4SStefano Zampini   {
2064fb89dddSMatthew G. Knepley     const PetscReal *maxCell, *Lstart, *L;
2076858538eSMatthew G. Knepley 
2084fb89dddSMatthew G. Knepley     PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
2094fb89dddSMatthew G. Knepley     PetscCall(DMSetPeriodicity(*newdm, maxCell, Lstart, L));
210c6b900c6SMatthew G. Knepley   }
21134aa8a36SMatthew G. Knepley   {
21234aa8a36SMatthew G. Knepley     PetscBool useCone, useClosure;
21334aa8a36SMatthew G. Knepley 
2149566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, &useCone, &useClosure));
2159566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(*newdm, PETSC_DEFAULT, useCone, useClosure));
21634aa8a36SMatthew G. Knepley   }
2173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21838221697SMatthew G. Knepley }
21938221697SMatthew G. Knepley 
2205d83a8b1SBarry Smith /*@
2215d83a8b1SBarry Smith   DMSetVecType - Sets the type of vector to be created with `DMCreateLocalVector()` and `DMCreateGlobalVector()`
2229a42bb27SBarry Smith 
22320f4b53cSBarry Smith   Logically Collective
2249a42bb27SBarry Smith 
225147403d9SBarry Smith   Input Parameters:
22632546409SMatthew G. Knepley + dm    - initial distributed array
227bb7acecfSBarry Smith - ctype - the vector type, for example `VECSTANDARD`, `VECCUDA`, or `VECVIENNACL`
2289a42bb27SBarry Smith 
22920f4b53cSBarry Smith   Options Database Key:
230147403d9SBarry Smith . -dm_vec_type ctype - the type of vector to create
2319a42bb27SBarry Smith 
2329a42bb27SBarry Smith   Level: intermediate
2339a42bb27SBarry Smith 
23460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMGetVecType()`, `DMSetMatType()`, `DMGetMatType()`,
235bb7acecfSBarry Smith           `VECSTANDARD`, `VECCUDA`, `VECVIENNACL`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`
2369a42bb27SBarry Smith @*/
23732546409SMatthew G. Knepley PetscErrorCode DMSetVecType(DM dm, VecType ctype)
238d71ae5a4SJacob Faibussowitsch {
23932546409SMatthew G. Knepley   char *tmp;
24032546409SMatthew G. Knepley 
2419a42bb27SBarry Smith   PetscFunctionBegin;
24232546409SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
24332546409SMatthew G. Knepley   PetscAssertPointer(ctype, 2);
24432546409SMatthew G. Knepley   tmp = (char *)dm->vectype;
24532546409SMatthew G. Knepley   PetscCall(PetscStrallocpy(ctype, (char **)&dm->vectype));
24632546409SMatthew G. Knepley   PetscCall(PetscFree(tmp));
2473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2489a42bb27SBarry Smith }
2499a42bb27SBarry Smith 
2505d83a8b1SBarry Smith /*@
251bb7acecfSBarry Smith   DMGetVecType - Gets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()`
252c0dedaeaSBarry Smith 
25320f4b53cSBarry Smith   Logically Collective
254c0dedaeaSBarry Smith 
255c0dedaeaSBarry Smith   Input Parameter:
256c0dedaeaSBarry Smith . da - initial distributed array
257c0dedaeaSBarry Smith 
258c0dedaeaSBarry Smith   Output Parameter:
259c0dedaeaSBarry Smith . ctype - the vector type
260c0dedaeaSBarry Smith 
261c0dedaeaSBarry Smith   Level: intermediate
262c0dedaeaSBarry Smith 
26360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMSetMatType()`, `DMGetMatType()`, `DMSetVecType()`
264c0dedaeaSBarry Smith @*/
265d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetVecType(DM da, VecType *ctype)
266d71ae5a4SJacob Faibussowitsch {
267c0dedaeaSBarry Smith   PetscFunctionBegin;
268c0dedaeaSBarry Smith   PetscValidHeaderSpecific(da, DM_CLASSID, 1);
269c0dedaeaSBarry Smith   *ctype = da->vectype;
2703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
271c0dedaeaSBarry Smith }
272c0dedaeaSBarry Smith 
2735f1ad066SMatthew G Knepley /*@
274bb7acecfSBarry Smith   VecGetDM - Gets the `DM` defining the data layout of the vector
2755f1ad066SMatthew G Knepley 
27620f4b53cSBarry Smith   Not Collective
2775f1ad066SMatthew G Knepley 
2785f1ad066SMatthew G Knepley   Input Parameter:
279bb7acecfSBarry Smith . v - The `Vec`
2805f1ad066SMatthew G Knepley 
2815f1ad066SMatthew G Knepley   Output Parameter:
282bb7acecfSBarry Smith . dm - The `DM`
2835f1ad066SMatthew G Knepley 
2845f1ad066SMatthew G Knepley   Level: intermediate
2855f1ad066SMatthew G Knepley 
286bb7acecfSBarry Smith   Note:
287bb7acecfSBarry Smith   A `Vec` may not have a `DM` associated with it.
288bb7acecfSBarry Smith 
2891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecSetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()`
2905f1ad066SMatthew G Knepley @*/
291d71ae5a4SJacob Faibussowitsch PetscErrorCode VecGetDM(Vec v, DM *dm)
292d71ae5a4SJacob Faibussowitsch {
2935f1ad066SMatthew G Knepley   PetscFunctionBegin;
2945f1ad066SMatthew G Knepley   PetscValidHeaderSpecific(v, VEC_CLASSID, 1);
2954f572ea9SToby Isaac   PetscAssertPointer(dm, 2);
2969566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)v, "__PETSc_dm", (PetscObject *)dm));
2973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2985f1ad066SMatthew G Knepley }
2995f1ad066SMatthew G Knepley 
3005f1ad066SMatthew G Knepley /*@
301bb7acecfSBarry Smith   VecSetDM - Sets the `DM` defining the data layout of the vector.
3025f1ad066SMatthew G Knepley 
30320f4b53cSBarry Smith   Not Collective
3045f1ad066SMatthew G Knepley 
3055f1ad066SMatthew G Knepley   Input Parameters:
306bb7acecfSBarry Smith + v  - The `Vec`
307bb7acecfSBarry Smith - dm - The `DM`
3085f1ad066SMatthew G Knepley 
30920f4b53cSBarry Smith   Level: developer
31020f4b53cSBarry Smith 
31173ff1848SBarry Smith   Notes:
312bb7acecfSBarry Smith   This is rarely used, generally one uses `DMGetLocalVector()` or  `DMGetGlobalVector()` to create a vector associated with a given `DM`
313d9805387SMatthew G. Knepley 
314bb7acecfSBarry Smith   This is NOT the same as `DMCreateGlobalVector()` since it does not change the view methods or perform other customization, but merely sets the `DM` member.
315bb7acecfSBarry Smith 
3161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecGetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()`
3175f1ad066SMatthew G Knepley @*/
318d71ae5a4SJacob Faibussowitsch PetscErrorCode VecSetDM(Vec v, DM dm)
319d71ae5a4SJacob Faibussowitsch {
3205f1ad066SMatthew G Knepley   PetscFunctionBegin;
3215f1ad066SMatthew G Knepley   PetscValidHeaderSpecific(v, VEC_CLASSID, 1);
322d7f50e27SLisandro Dalcin   if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2);
3239566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)v, "__PETSc_dm", (PetscObject)dm));
3243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3255f1ad066SMatthew G Knepley }
3265f1ad066SMatthew G Knepley 
327cc4c1da9SBarry Smith /*@
328bb7acecfSBarry Smith   DMSetISColoringType - Sets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM`
3298f1509bcSBarry Smith 
33020f4b53cSBarry Smith   Logically Collective
3318f1509bcSBarry Smith 
3328f1509bcSBarry Smith   Input Parameters:
333bb7acecfSBarry Smith + dm    - the `DM` context
3348f1509bcSBarry Smith - ctype - the matrix type
3358f1509bcSBarry Smith 
33620f4b53cSBarry Smith   Options Database Key:
3378f1509bcSBarry Smith . -dm_is_coloring_type - global or local
3388f1509bcSBarry Smith 
3398f1509bcSBarry Smith   Level: intermediate
3408f1509bcSBarry Smith 
3411cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`,
342bb7acecfSBarry Smith           `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL`
3438f1509bcSBarry Smith @*/
344d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetISColoringType(DM dm, ISColoringType ctype)
345d71ae5a4SJacob Faibussowitsch {
3468f1509bcSBarry Smith   PetscFunctionBegin;
3478f1509bcSBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3488f1509bcSBarry Smith   dm->coloringtype = ctype;
3493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3508f1509bcSBarry Smith }
3518f1509bcSBarry Smith 
352cc4c1da9SBarry Smith /*@
353bb7acecfSBarry Smith   DMGetISColoringType - Gets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM`
354521d9a4cSLisandro Dalcin 
35520f4b53cSBarry Smith   Logically Collective
356521d9a4cSLisandro Dalcin 
357521d9a4cSLisandro Dalcin   Input Parameter:
358bb7acecfSBarry Smith . dm - the `DM` context
3598f1509bcSBarry Smith 
3608f1509bcSBarry Smith   Output Parameter:
3618f1509bcSBarry Smith . ctype - the matrix type
3628f1509bcSBarry Smith 
36320f4b53cSBarry Smith   Options Database Key:
3648f1509bcSBarry Smith . -dm_is_coloring_type - global or local
3658f1509bcSBarry Smith 
3668f1509bcSBarry Smith   Level: intermediate
3678f1509bcSBarry Smith 
3681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`,
36942747ad1SJacob Faibussowitsch           `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL`
3708f1509bcSBarry Smith @*/
371d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetISColoringType(DM dm, ISColoringType *ctype)
372d71ae5a4SJacob Faibussowitsch {
3738f1509bcSBarry Smith   PetscFunctionBegin;
3748f1509bcSBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3758f1509bcSBarry Smith   *ctype = dm->coloringtype;
3763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3778f1509bcSBarry Smith }
3788f1509bcSBarry Smith 
379cc4c1da9SBarry Smith /*@
380bb7acecfSBarry Smith   DMSetMatType - Sets the type of matrix created with `DMCreateMatrix()`
3818f1509bcSBarry Smith 
38220f4b53cSBarry Smith   Logically Collective
3838f1509bcSBarry Smith 
3848f1509bcSBarry Smith   Input Parameters:
385bb7acecfSBarry Smith + dm    - the `DM` context
386bb7acecfSBarry Smith - ctype - the matrix type, for example `MATMPIAIJ`
387521d9a4cSLisandro Dalcin 
38820f4b53cSBarry Smith   Options Database Key:
389bb7acecfSBarry Smith . -dm_mat_type ctype - the type of the matrix to create, for example mpiaij
390521d9a4cSLisandro Dalcin 
391521d9a4cSLisandro Dalcin   Level: intermediate
392521d9a4cSLisandro Dalcin 
39342747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatType`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMGetMatType()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()`
394521d9a4cSLisandro Dalcin @*/
395d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatType(DM dm, MatType ctype)
396d71ae5a4SJacob Faibussowitsch {
39732546409SMatthew G. Knepley   char *tmp;
39832546409SMatthew G. Knepley 
399521d9a4cSLisandro Dalcin   PetscFunctionBegin;
400521d9a4cSLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
40132546409SMatthew G. Knepley   PetscAssertPointer(ctype, 2);
40232546409SMatthew G. Knepley   tmp = (char *)dm->mattype;
4039566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(ctype, (char **)&dm->mattype));
40432546409SMatthew G. Knepley   PetscCall(PetscFree(tmp));
4053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
406521d9a4cSLisandro Dalcin }
407521d9a4cSLisandro Dalcin 
408cc4c1da9SBarry Smith /*@
40920f4b53cSBarry Smith   DMGetMatType - Gets the type of matrix that would be created with `DMCreateMatrix()`
410c0dedaeaSBarry Smith 
41120f4b53cSBarry Smith   Logically Collective
412c0dedaeaSBarry Smith 
413c0dedaeaSBarry Smith   Input Parameter:
414bb7acecfSBarry Smith . dm - the `DM` context
415c0dedaeaSBarry Smith 
416c0dedaeaSBarry Smith   Output Parameter:
417c0dedaeaSBarry Smith . ctype - the matrix type
418c0dedaeaSBarry Smith 
419c0dedaeaSBarry Smith   Level: intermediate
420c0dedaeaSBarry Smith 
42142747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMSetMatType()`
422c0dedaeaSBarry Smith @*/
423d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetMatType(DM dm, MatType *ctype)
424d71ae5a4SJacob Faibussowitsch {
425c0dedaeaSBarry Smith   PetscFunctionBegin;
426c0dedaeaSBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
427c0dedaeaSBarry Smith   *ctype = dm->mattype;
4283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
429c0dedaeaSBarry Smith }
430c0dedaeaSBarry Smith 
431c688c046SMatthew G Knepley /*@
432bb7acecfSBarry Smith   MatGetDM - Gets the `DM` defining the data layout of the matrix
433c688c046SMatthew G Knepley 
43420f4b53cSBarry Smith   Not Collective
435c688c046SMatthew G Knepley 
436c688c046SMatthew G Knepley   Input Parameter:
437bb7acecfSBarry Smith . A - The `Mat`
438c688c046SMatthew G Knepley 
439c688c046SMatthew G Knepley   Output Parameter:
440bb7acecfSBarry Smith . dm - The `DM`
441c688c046SMatthew G Knepley 
442c688c046SMatthew G Knepley   Level: intermediate
443c688c046SMatthew G Knepley 
444bb7acecfSBarry Smith   Note:
445bb7acecfSBarry Smith   A matrix may not have a `DM` associated with it
446bb7acecfSBarry Smith 
44773ff1848SBarry Smith   Developer Note:
448bb7acecfSBarry Smith   Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with the `Mat` through a `PetscObjectCompose()` operation
4498f1509bcSBarry Smith 
4501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatSetDM()`, `DMCreateMatrix()`, `DMSetMatType()`
451c688c046SMatthew G Knepley @*/
452d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDM(Mat A, DM *dm)
453d71ae5a4SJacob Faibussowitsch {
454c688c046SMatthew G Knepley   PetscFunctionBegin;
455c688c046SMatthew G Knepley   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
4564f572ea9SToby Isaac   PetscAssertPointer(dm, 2);
4579566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_dm", (PetscObject *)dm));
4583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
459c688c046SMatthew G Knepley }
460c688c046SMatthew G Knepley 
461c688c046SMatthew G Knepley /*@
462bb7acecfSBarry Smith   MatSetDM - Sets the `DM` defining the data layout of the matrix
463c688c046SMatthew G Knepley 
46420f4b53cSBarry Smith   Not Collective
465c688c046SMatthew G Knepley 
466c688c046SMatthew G Knepley   Input Parameters:
46720f4b53cSBarry Smith + A  - The `Mat`
46820f4b53cSBarry Smith - dm - The `DM`
469c688c046SMatthew G Knepley 
470bb7acecfSBarry Smith   Level: developer
471c688c046SMatthew G Knepley 
472bb7acecfSBarry Smith   Note:
473bb7acecfSBarry Smith   This is rarely used in practice, rather `DMCreateMatrix()` is used to create a matrix associated with a particular `DM`
474bb7acecfSBarry Smith 
47573ff1848SBarry Smith   Developer Note:
476bb7acecfSBarry Smith   Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with
477bb7acecfSBarry Smith   the `Mat` through a `PetscObjectCompose()` operation
4788f1509bcSBarry Smith 
4791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatGetDM()`, `DMCreateMatrix()`, `DMSetMatType()`
480c688c046SMatthew G Knepley @*/
481d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetDM(Mat A, DM dm)
482d71ae5a4SJacob Faibussowitsch {
483c688c046SMatthew G Knepley   PetscFunctionBegin;
484c688c046SMatthew G Knepley   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
4858865f1eaSKarl Rupp   if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2);
4869566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_dm", (PetscObject)dm));
4873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
488c688c046SMatthew G Knepley }
489c688c046SMatthew G Knepley 
490cc4c1da9SBarry Smith /*@
491bb7acecfSBarry Smith   DMSetOptionsPrefix - Sets the prefix prepended to all option names when searching through the options database
4929a42bb27SBarry Smith 
49320f4b53cSBarry Smith   Logically Collective
4949a42bb27SBarry Smith 
495d8d19677SJose E. Roman   Input Parameters:
49660225df5SJacob Faibussowitsch + dm     - the `DM` context
497bb7acecfSBarry Smith - prefix - the prefix to prepend
4989a42bb27SBarry Smith 
49920f4b53cSBarry Smith   Level: advanced
50020f4b53cSBarry Smith 
50120f4b53cSBarry Smith   Note:
5029a42bb27SBarry Smith   A hyphen (-) must NOT be given at the beginning of the prefix name.
5039a42bb27SBarry Smith   The first character of all runtime options is AUTOMATICALLY the hyphen.
5049a42bb27SBarry Smith 
5051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscObjectSetOptionsPrefix()`, `DMSetFromOptions()`
5069a42bb27SBarry Smith @*/
507d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOptionsPrefix(DM dm, const char prefix[])
508d71ae5a4SJacob Faibussowitsch {
5099a42bb27SBarry Smith   PetscFunctionBegin;
5109a42bb27SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5119566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, prefix));
5121baa6e33SBarry Smith   if (dm->sf) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sf, prefix));
5131baa6e33SBarry Smith   if (dm->sectionSF) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sectionSF, prefix));
5143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5159a42bb27SBarry Smith }
5169a42bb27SBarry Smith 
517cc4c1da9SBarry Smith /*@
518da81f932SPierre Jolivet   DMAppendOptionsPrefix - Appends an additional string to an already existing prefix used for searching for
519bb7acecfSBarry Smith   `DM` options in the options database.
52031697293SDave May 
52120f4b53cSBarry Smith   Logically Collective
52231697293SDave May 
52331697293SDave May   Input Parameters:
524bb7acecfSBarry Smith + dm     - the `DM` context
525bb7acecfSBarry Smith - prefix - the string to append to the current prefix
52631697293SDave May 
52720f4b53cSBarry Smith   Level: advanced
52820f4b53cSBarry Smith 
52920f4b53cSBarry Smith   Note:
530bb7acecfSBarry Smith   If the `DM` does not currently have an options prefix then this value is used alone as the prefix as if `DMSetOptionsPrefix()` had been called.
53131697293SDave May   A hyphen (-) must NOT be given at the beginning of the prefix name.
53231697293SDave May   The first character of all runtime options is AUTOMATICALLY the hyphen.
53331697293SDave May 
5341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMGetOptionsPrefix()`, `PetscObjectAppendOptionsPrefix()`, `DMSetFromOptions()`
53531697293SDave May @*/
536d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAppendOptionsPrefix(DM dm, const char prefix[])
537d71ae5a4SJacob Faibussowitsch {
53831697293SDave May   PetscFunctionBegin;
53931697293SDave May   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5409566063dSJacob Faibussowitsch   PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, prefix));
5413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
54231697293SDave May }
54331697293SDave May 
544cc4c1da9SBarry Smith /*@
54531697293SDave May   DMGetOptionsPrefix - Gets the prefix used for searching for all
546bb7acecfSBarry Smith   DM options in the options database.
54731697293SDave May 
54831697293SDave May   Not Collective
54931697293SDave May 
5502fe279fdSBarry Smith   Input Parameter:
551bb7acecfSBarry Smith . dm - the `DM` context
55231697293SDave May 
5532fe279fdSBarry Smith   Output Parameter:
55431697293SDave May . prefix - pointer to the prefix string used is returned
55531697293SDave May 
55631697293SDave May   Level: advanced
55731697293SDave May 
55873ff1848SBarry Smith   Fortran Note:
55920f4b53cSBarry Smith   Pass in a string 'prefix' of
56020f4b53cSBarry Smith   sufficient length to hold the prefix.
56120f4b53cSBarry Smith 
5621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMAppendOptionsPrefix()`, `DMSetFromOptions()`
56331697293SDave May @*/
564d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOptionsPrefix(DM dm, const char *prefix[])
565d71ae5a4SJacob Faibussowitsch {
56631697293SDave May   PetscFunctionBegin;
56731697293SDave May   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5689566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, prefix));
5693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
57031697293SDave May }
57131697293SDave May 
57262e5d2d2SJDBetteridge static PetscErrorCode DMCountNonCyclicReferences_Internal(DM dm, PetscBool recurseCoarse, PetscBool recurseFine, PetscInt *ncrefct)
573d71ae5a4SJacob Faibussowitsch {
5746eb26441SStefano Zampini   PetscInt refct = ((PetscObject)dm)->refct;
57588bdff64SToby Isaac 
57688bdff64SToby Isaac   PetscFunctionBegin;
577aab5bcd8SJed Brown   *ncrefct = 0;
57888bdff64SToby Isaac   if (dm->coarseMesh && dm->coarseMesh->fineMesh == dm) {
57988bdff64SToby Isaac     refct--;
58088bdff64SToby Isaac     if (recurseCoarse) {
58188bdff64SToby Isaac       PetscInt coarseCount;
58288bdff64SToby Isaac 
58362e5d2d2SJDBetteridge       PetscCall(DMCountNonCyclicReferences_Internal(dm->coarseMesh, PETSC_TRUE, PETSC_FALSE, &coarseCount));
58488bdff64SToby Isaac       refct += coarseCount;
58588bdff64SToby Isaac     }
58688bdff64SToby Isaac   }
58788bdff64SToby Isaac   if (dm->fineMesh && dm->fineMesh->coarseMesh == dm) {
58888bdff64SToby Isaac     refct--;
58988bdff64SToby Isaac     if (recurseFine) {
59088bdff64SToby Isaac       PetscInt fineCount;
59188bdff64SToby Isaac 
59262e5d2d2SJDBetteridge       PetscCall(DMCountNonCyclicReferences_Internal(dm->fineMesh, PETSC_FALSE, PETSC_TRUE, &fineCount));
59388bdff64SToby Isaac       refct += fineCount;
59488bdff64SToby Isaac     }
59588bdff64SToby Isaac   }
59688bdff64SToby Isaac   *ncrefct = refct;
5973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
59888bdff64SToby Isaac }
59988bdff64SToby Isaac 
60062e5d2d2SJDBetteridge /* Generic wrapper for DMCountNonCyclicReferences_Internal() */
60162e5d2d2SJDBetteridge PetscErrorCode DMCountNonCyclicReferences(PetscObject dm, PetscInt *ncrefct)
60262e5d2d2SJDBetteridge {
60362e5d2d2SJDBetteridge   PetscFunctionBegin;
60462e5d2d2SJDBetteridge   PetscCall(DMCountNonCyclicReferences_Internal((DM)dm, PETSC_TRUE, PETSC_TRUE, ncrefct));
6053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
60662e5d2d2SJDBetteridge }
60762e5d2d2SJDBetteridge 
608d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyLabelLinkList_Internal(DM dm)
609d71ae5a4SJacob Faibussowitsch {
6105d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
611354557abSToby Isaac 
612354557abSToby Isaac   PetscFunctionBegin;
613354557abSToby Isaac   /* destroy the labels */
614354557abSToby Isaac   while (next) {
615354557abSToby Isaac     DMLabelLink tmp = next->next;
616354557abSToby Isaac 
6175d80c0bfSVaclav Hapla     if (next->label == dm->depthLabel) dm->depthLabel = NULL;
618ba2698f1SMatthew G. Knepley     if (next->label == dm->celltypeLabel) dm->celltypeLabel = NULL;
6199566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&next->label));
6209566063dSJacob Faibussowitsch     PetscCall(PetscFree(next));
621354557abSToby Isaac     next = tmp;
622354557abSToby Isaac   }
6235d80c0bfSVaclav Hapla   dm->labels = NULL;
6243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
625354557abSToby Isaac }
626354557abSToby Isaac 
62766976f2fSJacob Faibussowitsch static PetscErrorCode DMDestroyCoordinates_Private(DMCoordinates *c)
628d71ae5a4SJacob Faibussowitsch {
6296858538eSMatthew G. Knepley   PetscFunctionBegin;
6306858538eSMatthew G. Knepley   c->dim = PETSC_DEFAULT;
6316858538eSMatthew G. Knepley   PetscCall(DMDestroy(&c->dm));
6326858538eSMatthew G. Knepley   PetscCall(VecDestroy(&c->x));
6336858538eSMatthew G. Knepley   PetscCall(VecDestroy(&c->xl));
6346858538eSMatthew G. Knepley   PetscCall(DMFieldDestroy(&c->field));
6353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6366858538eSMatthew G. Knepley }
6376858538eSMatthew G. Knepley 
6380764c050SBarry Smith /*@
639bb7acecfSBarry Smith   DMDestroy - Destroys a `DM`.
64047c6ae99SBarry Smith 
64120f4b53cSBarry Smith   Collective
64247c6ae99SBarry Smith 
64347c6ae99SBarry Smith   Input Parameter:
644bb7acecfSBarry Smith . dm - the `DM` object to destroy
64547c6ae99SBarry Smith 
64647c6ae99SBarry Smith   Level: developer
64747c6ae99SBarry Smith 
6481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMType`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
64947c6ae99SBarry Smith @*/
650d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroy(DM *dm)
651d71ae5a4SJacob Faibussowitsch {
6526eb26441SStefano Zampini   PetscInt cnt;
65347c6ae99SBarry Smith 
65447c6ae99SBarry Smith   PetscFunctionBegin;
6553ba16761SJacob Faibussowitsch   if (!*dm) PetscFunctionReturn(PETSC_SUCCESS);
656f4f49eeaSPierre Jolivet   PetscValidHeaderSpecific(*dm, DM_CLASSID, 1);
65787e657c6SBarry Smith 
65888bdff64SToby Isaac   /* count all non-cyclic references in the doubly-linked list of coarse<->fine meshes */
65962e5d2d2SJDBetteridge   PetscCall(DMCountNonCyclicReferences_Internal(*dm, PETSC_TRUE, PETSC_TRUE, &cnt));
660f4f49eeaSPierre Jolivet   --((PetscObject)*dm)->refct;
6619371c9d4SSatish Balay   if (--cnt > 0) {
6629371c9d4SSatish Balay     *dm = NULL;
6633ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
6649371c9d4SSatish Balay   }
665f4f49eeaSPierre Jolivet   if (((PetscObject)*dm)->refct < 0) PetscFunctionReturn(PETSC_SUCCESS);
666f4f49eeaSPierre Jolivet   ((PetscObject)*dm)->refct = 0;
6676eb26441SStefano Zampini 
6689566063dSJacob Faibussowitsch   PetscCall(DMClearGlobalVectors(*dm));
6699566063dSJacob Faibussowitsch   PetscCall(DMClearLocalVectors(*dm));
670974ca4ecSStefano Zampini   PetscCall(DMClearNamedGlobalVectors(*dm));
671974ca4ecSStefano Zampini   PetscCall(DMClearNamedLocalVectors(*dm));
6722348bcf4SPeter Brune 
673b17ce1afSJed Brown   /* Destroy the list of hooks */
674c833c3b5SJed Brown   {
675c833c3b5SJed Brown     DMCoarsenHookLink link, next;
676b17ce1afSJed Brown     for (link = (*dm)->coarsenhook; link; link = next) {
677b17ce1afSJed Brown       next = link->next;
6789566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
679b17ce1afSJed Brown     }
6800298fd71SBarry Smith     (*dm)->coarsenhook = NULL;
681c833c3b5SJed Brown   }
682c833c3b5SJed Brown   {
683c833c3b5SJed Brown     DMRefineHookLink link, next;
684c833c3b5SJed Brown     for (link = (*dm)->refinehook; link; link = next) {
685c833c3b5SJed Brown       next = link->next;
6869566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
687c833c3b5SJed Brown     }
6880298fd71SBarry Smith     (*dm)->refinehook = NULL;
689c833c3b5SJed Brown   }
690be081cd6SPeter Brune   {
691be081cd6SPeter Brune     DMSubDomainHookLink link, next;
692be081cd6SPeter Brune     for (link = (*dm)->subdomainhook; link; link = next) {
693be081cd6SPeter Brune       next = link->next;
6949566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
695be081cd6SPeter Brune     }
6960298fd71SBarry Smith     (*dm)->subdomainhook = NULL;
697be081cd6SPeter Brune   }
698baf369e7SPeter Brune   {
699baf369e7SPeter Brune     DMGlobalToLocalHookLink link, next;
700baf369e7SPeter Brune     for (link = (*dm)->gtolhook; link; link = next) {
701baf369e7SPeter Brune       next = link->next;
7029566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
703baf369e7SPeter Brune     }
7040298fd71SBarry Smith     (*dm)->gtolhook = NULL;
705baf369e7SPeter Brune   }
706d4d07f1eSToby Isaac   {
707d4d07f1eSToby Isaac     DMLocalToGlobalHookLink link, next;
708d4d07f1eSToby Isaac     for (link = (*dm)->ltoghook; link; link = next) {
709d4d07f1eSToby Isaac       next = link->next;
7109566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
711d4d07f1eSToby Isaac     }
712d4d07f1eSToby Isaac     (*dm)->ltoghook = NULL;
713d4d07f1eSToby Isaac   }
714aa1993deSMatthew G Knepley   /* Destroy the work arrays */
715aa1993deSMatthew G Knepley   {
716aa1993deSMatthew G Knepley     DMWorkLink link, next;
717936381afSPierre Jolivet     PetscCheck(!(*dm)->workout, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Work array still checked out %p %p", (void *)(*dm)->workout, (void *)(*dm)->workout->mem);
718aa1993deSMatthew G Knepley     for (link = (*dm)->workin; link; link = next) {
719aa1993deSMatthew G Knepley       next = link->next;
7209566063dSJacob Faibussowitsch       PetscCall(PetscFree(link->mem));
7219566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
722aa1993deSMatthew G Knepley     }
7230298fd71SBarry Smith     (*dm)->workin = NULL;
724aa1993deSMatthew G Knepley   }
725c58f1c22SToby Isaac   /* destroy the labels */
7269566063dSJacob Faibussowitsch   PetscCall(DMDestroyLabelLinkList_Internal(*dm));
727f4cdcedcSVaclav Hapla   /* destroy the fields */
7289566063dSJacob Faibussowitsch   PetscCall(DMClearFields(*dm));
729f4cdcedcSVaclav Hapla   /* destroy the boundaries */
730e6f8dbb6SToby Isaac   {
731e6f8dbb6SToby Isaac     DMBoundary next = (*dm)->boundary;
732e6f8dbb6SToby Isaac     while (next) {
733e6f8dbb6SToby Isaac       DMBoundary b = next;
734e6f8dbb6SToby Isaac 
735e6f8dbb6SToby Isaac       next = b->next;
7369566063dSJacob Faibussowitsch       PetscCall(PetscFree(b));
737e6f8dbb6SToby Isaac     }
738e6f8dbb6SToby Isaac   }
739b17ce1afSJed Brown 
7409566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&(*dm)->dmksp));
7419566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&(*dm)->dmsnes));
7429566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&(*dm)->dmts));
74352536dc3SBarry Smith 
74448a46eb9SPierre Jolivet   if ((*dm)->ctx && (*dm)->ctxdestroy) PetscCall((*(*dm)->ctxdestroy)(&(*dm)->ctx));
7459566063dSJacob Faibussowitsch   PetscCall(MatFDColoringDestroy(&(*dm)->fd));
7469566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&(*dm)->ltogmap));
7479566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->vectype));
7489566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->mattype));
74988ed4aceSMatthew G Knepley 
7509566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&(*dm)->localSection));
7519566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&(*dm)->globalSection));
752adc21957SMatthew G. Knepley   PetscCall(PetscFree((*dm)->reorderSectionType));
7539566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&(*dm)->map));
7549566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&(*dm)->defaultConstraint.section));
7559566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&(*dm)->defaultConstraint.mat));
7569566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&(*dm)->sf));
7579566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&(*dm)->sectionSF));
75848a46eb9SPierre Jolivet   if ((*dm)->sfNatural) PetscCall(PetscSFDestroy(&(*dm)->sfNatural));
7599566063dSJacob Faibussowitsch   PetscCall(PetscObjectDereference((PetscObject)(*dm)->sfMigration));
760e4d5475eSStefano Zampini   PetscCall(DMClearAuxiliaryVec(*dm));
7619566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxDestroy(&(*dm)->auxData));
76248a46eb9SPierre Jolivet   if ((*dm)->coarseMesh && (*dm)->coarseMesh->fineMesh == *dm) PetscCall(DMSetFineDM((*dm)->coarseMesh, NULL));
7636eb26441SStefano Zampini 
7649566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->coarseMesh));
76548a46eb9SPierre Jolivet   if ((*dm)->fineMesh && (*dm)->fineMesh->coarseMesh == *dm) PetscCall(DMSetCoarseDM((*dm)->fineMesh, NULL));
7669566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->fineMesh));
7674fb89dddSMatthew G. Knepley   PetscCall(PetscFree((*dm)->Lstart));
7689566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->L));
7699566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->maxCell));
7706858538eSMatthew G. Knepley   PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[0]));
7716858538eSMatthew G. Knepley   PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[1]));
7729566063dSJacob Faibussowitsch   if ((*dm)->transformDestroy) PetscCall((*(*dm)->transformDestroy)(*dm, (*dm)->transformCtx));
7739566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->transformDM));
7749566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&(*dm)->transform));
775ddedc8f6SJames Wright   for (PetscInt i = 0; i < (*dm)->periodic.num_affines; i++) {
776ddedc8f6SJames Wright     PetscCall(VecScatterDestroy(&(*dm)->periodic.affine_to_local[i]));
777ddedc8f6SJames Wright     PetscCall(VecDestroy(&(*dm)->periodic.affine[i]));
778ddedc8f6SJames Wright   }
779ddedc8f6SJames Wright   if ((*dm)->periodic.num_affines > 0) PetscCall(PetscFree2((*dm)->periodic.affine_to_local, (*dm)->periodic.affine));
7806636e97aSMatthew G Knepley 
7819566063dSJacob Faibussowitsch   PetscCall(DMClearDS(*dm));
7829566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->dmBC));
783e04113cfSBarry Smith   /* if memory was published with SAWs then destroy it */
7849566063dSJacob Faibussowitsch   PetscCall(PetscObjectSAWsViewOff((PetscObject)*dm));
785732e2eb9SMatthew G Knepley 
786213acdd3SPierre Jolivet   PetscTryTypeMethod(*dm, destroy);
7879566063dSJacob Faibussowitsch   PetscCall(DMMonitorCancel(*dm));
788d2b2dc1eSMatthew G. Knepley   PetscCall(DMCeedDestroy(&(*dm)->dmceed));
789f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED
7909566063dSJacob Faibussowitsch   PetscCallCEED(CeedElemRestrictionDestroy(&(*dm)->ceedERestrict));
7919566063dSJacob Faibussowitsch   PetscCallCEED(CeedDestroy(&(*dm)->ceed));
792f918ec44SMatthew G. Knepley #endif
793435a35e8SMatthew G Knepley   /* We do not destroy (*dm)->data here so that we can reference count backend objects */
7949566063dSJacob Faibussowitsch   PetscCall(PetscHeaderDestroy(dm));
7953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
79647c6ae99SBarry Smith }
79747c6ae99SBarry Smith 
798d7bf68aeSBarry Smith /*@
799bb7acecfSBarry Smith   DMSetUp - sets up the data structures inside a `DM` object
800d7bf68aeSBarry Smith 
80120f4b53cSBarry Smith   Collective
802d7bf68aeSBarry Smith 
803d7bf68aeSBarry Smith   Input Parameter:
804bb7acecfSBarry Smith . dm - the `DM` object to setup
805d7bf68aeSBarry Smith 
806bb7acecfSBarry Smith   Level: intermediate
807d7bf68aeSBarry Smith 
808bb7acecfSBarry Smith   Note:
809bb7acecfSBarry Smith   This is usually called after various parameter setting operations and `DMSetFromOptions()` are called on the `DM`
810bb7acecfSBarry Smith 
8111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
812d7bf68aeSBarry Smith @*/
813d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUp(DM dm)
814d71ae5a4SJacob Faibussowitsch {
815d7bf68aeSBarry Smith   PetscFunctionBegin;
816171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8173ba16761SJacob Faibussowitsch   if (dm->setupcalled) PetscFunctionReturn(PETSC_SUCCESS);
818dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, setup);
8198387afaaSJed Brown   dm->setupcalled = PETSC_TRUE;
8203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
821d7bf68aeSBarry Smith }
822d7bf68aeSBarry Smith 
823d7bf68aeSBarry Smith /*@
824bb7acecfSBarry Smith   DMSetFromOptions - sets parameters in a `DM` from the options database
825d7bf68aeSBarry Smith 
82620f4b53cSBarry Smith   Collective
827d7bf68aeSBarry Smith 
828d7bf68aeSBarry Smith   Input Parameter:
829bb7acecfSBarry Smith . dm - the `DM` object to set options for
830d7bf68aeSBarry Smith 
83120f4b53cSBarry Smith   Options Database Keys:
832bb7acecfSBarry Smith + -dm_preallocate_only                               - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros
833bb7acecfSBarry Smith . -dm_vec_type <type>                                - type of vector to create inside `DM`
834bb7acecfSBarry Smith . -dm_mat_type <type>                                - type of matrix to create inside `DM`
835a4ea9b21SRichard Tran Mills . -dm_is_coloring_type                               - <global or local>
83620f4b53cSBarry Smith . -dm_bind_below <n>                                 - bind (force execution on CPU) for `Vec` and `Mat` objects with local size (number of vector entries or matrix rows) below n; currently only supported for `DMDA`
83720f4b53cSBarry Smith . -dm_plex_filename <str>                            - File containing a mesh
8389318fe57SMatthew G. Knepley . -dm_plex_boundary_filename <str>                   - File containing a mesh boundary
839cd7e8a5eSksagiyam . -dm_plex_name <str>                                - Name of the mesh in the file
8405dca41c3SJed Brown . -dm_plex_shape <shape>                             - The domain shape, such as `BOX`, `SPHERE`, etc.
8419318fe57SMatthew G. Knepley . -dm_plex_cell <ct>                                 - Cell shape
8429318fe57SMatthew G. Knepley . -dm_plex_reference_cell_domain <bool>              - Use a reference cell domain
8439318fe57SMatthew G. Knepley . -dm_plex_dim <dim>                                 - Set the topological dimension
844bb7acecfSBarry Smith . -dm_plex_simplex <bool>                            - `PETSC_TRUE` for simplex elements, `PETSC_FALSE` for tensor elements
845bb7acecfSBarry Smith . -dm_plex_interpolate <bool>                        - `PETSC_TRUE` turns on topological interpolation (creating edges and faces)
8469318fe57SMatthew G. Knepley . -dm_plex_scale <sc>                                - Scale factor for mesh coordinates
847be664eb1SMatthew G. Knepley . -dm_coord_remap <bool>                             - Map coordinates using a function
848be664eb1SMatthew G. Knepley . -dm_coord_map <mapname>                            - Select a builtin coordinate map
849be664eb1SMatthew G. Knepley . -dm_coord_map_params <p0,p1,p2,...>                - Set coordinate mapping parameters
8509318fe57SMatthew G. Knepley . -dm_plex_box_faces <m,n,p>                         - Number of faces along each dimension
8519318fe57SMatthew G. Knepley . -dm_plex_box_lower <x,y,z>                         - Specify lower-left-bottom coordinates for the box
8529318fe57SMatthew G. Knepley . -dm_plex_box_upper <x,y,z>                         - Specify upper-right-top coordinates for the box
853bb7acecfSBarry Smith . -dm_plex_box_bd <bx,by,bz>                         - Specify the `DMBoundaryType` for each direction
8549318fe57SMatthew G. Knepley . -dm_plex_sphere_radius <r>                         - The sphere radius
8559318fe57SMatthew G. Knepley . -dm_plex_ball_radius <r>                           - Radius of the ball
8569318fe57SMatthew G. Knepley . -dm_plex_cylinder_bd <bz>                          - Boundary type in the z direction
8579318fe57SMatthew G. Knepley . -dm_plex_cylinder_num_wedges <n>                   - Number of wedges around the cylinder
858bdf63967SMatthew G. Knepley . -dm_plex_reorder <order>                           - Reorder the mesh using the specified algorithm
8599318fe57SMatthew G. Knepley . -dm_refine_pre <n>                                 - The number of refinements before distribution
8609318fe57SMatthew G. Knepley . -dm_refine_uniform_pre <bool>                      - Flag for uniform refinement before distribution
8619318fe57SMatthew G. Knepley . -dm_refine_volume_limit_pre <v>                    - The maximum cell volume after refinement before distribution
8629318fe57SMatthew G. Knepley . -dm_refine <n>                                     - The number of refinements after distribution
863bdf63967SMatthew G. Knepley . -dm_extrude <l>                                    - Activate extrusion and specify the number of layers to extrude
864d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thickness <t>           - The total thickness of extruded layers
865d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_use_tensor <bool>       - Use tensor cells when extruding
866d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_symmetric <bool>        - Extrude layers symmetrically about the surface
867d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_normal <n0,...,nd>      - Specify the extrusion direction
868d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thicknesses <t0,...,tl> - Specify thickness of each layer
869909dfd52SMatthew G. Knepley . -dm_plex_create_fv_ghost_cells                     - Flag to create finite volume ghost cells on the boundary
870909dfd52SMatthew G. Knepley . -dm_plex_fv_ghost_cells_label <name>               - Label name for ghost cells boundary
8719318fe57SMatthew G. Knepley . -dm_distribute <bool>                              - Flag to redistribute a mesh among processes
8729318fe57SMatthew G. Knepley . -dm_distribute_overlap <n>                         - The size of the overlap halo
8739318fe57SMatthew G. Knepley . -dm_plex_adj_cone <bool>                           - Set adjacency direction
87420f4b53cSBarry Smith . -dm_plex_adj_closure <bool>                        - Set adjacency size
875d2b2dc1eSMatthew G. Knepley . -dm_plex_use_ceed <bool>                           - Use LibCEED as the FEM backend
87620f4b53cSBarry Smith . -dm_plex_check_symmetry                            - Check that the adjacency information in the mesh is symmetric - `DMPlexCheckSymmetry()`
877bb7acecfSBarry Smith . -dm_plex_check_skeleton                            - Check that each cell has the correct number of vertices (only for homogeneous simplex or tensor meshes) - `DMPlexCheckSkeleton()`
878bb7acecfSBarry Smith . -dm_plex_check_faces                               - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type - `DMPlexCheckFaces()`
879bb7acecfSBarry Smith . -dm_plex_check_geometry                            - Check that cells have positive volume - `DMPlexCheckGeometry()`
880bb7acecfSBarry Smith . -dm_plex_check_pointsf                             - Check some necessary conditions for `PointSF` - `DMPlexCheckPointSF()`
881bb7acecfSBarry Smith . -dm_plex_check_interface_cones                     - Check points on inter-partition interfaces have conforming order of cone points - `DMPlexCheckInterfaceCones()`
882384a6580SVaclav Hapla - -dm_plex_check_all                                 - Perform all the checks above
883d7bf68aeSBarry Smith 
88495eb5ee5SVaclav Hapla   Level: intermediate
88595eb5ee5SVaclav Hapla 
8868e704042SBarry Smith   Note:
8878e704042SBarry Smith   For some `DMType` such as `DMDA` this cannot be called after `DMSetUp()` has been called.
8888e704042SBarry Smith 
8891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
890bb7acecfSBarry Smith          `DMPlexCheckSymmetry()`, `DMPlexCheckSkeleton()`, `DMPlexCheckFaces()`, `DMPlexCheckGeometry()`, `DMPlexCheckPointSF()`, `DMPlexCheckInterfaceCones()`,
8918e704042SBarry Smith          `DMSetOptionsPrefix()`, `DMType`, `DMPLEX`, `DMDA`, `DMSetUp()`
892d7bf68aeSBarry Smith @*/
893d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFromOptions(DM dm)
894d71ae5a4SJacob Faibussowitsch {
8957781c08eSBarry Smith   char      typeName[256];
896ca266f36SBarry Smith   PetscBool flg;
897d7bf68aeSBarry Smith 
898d7bf68aeSBarry Smith   PetscFunctionBegin;
899171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
90049be4549SMatthew G. Knepley   dm->setfromoptionscalled = PETSC_TRUE;
9019566063dSJacob Faibussowitsch   if (dm->sf) PetscCall(PetscSFSetFromOptions(dm->sf));
9029566063dSJacob Faibussowitsch   if (dm->sectionSF) PetscCall(PetscSFSetFromOptions(dm->sectionSF));
903dd4c3f67SMatthew G. Knepley   if (dm->coordinates[0].dm) PetscCall(DMSetFromOptions(dm->coordinates[0].dm));
904d0609cedSBarry Smith   PetscObjectOptionsBegin((PetscObject)dm);
9059566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-dm_preallocate_only", "only preallocate matrix, but do not set column indices", "DMSetMatrixPreallocateOnly", dm->prealloc_only, &dm->prealloc_only, NULL));
9069566063dSJacob Faibussowitsch   PetscCall(PetscOptionsFList("-dm_vec_type", "Vector type used for created vectors", "DMSetVecType", VecList, dm->vectype, typeName, 256, &flg));
9071baa6e33SBarry Smith   if (flg) PetscCall(DMSetVecType(dm, typeName));
9089566063dSJacob Faibussowitsch   PetscCall(PetscOptionsFList("-dm_mat_type", "Matrix type used for created matrices", "DMSetMatType", MatList, dm->mattype ? dm->mattype : typeName, typeName, sizeof(typeName), &flg));
9091baa6e33SBarry Smith   if (flg) PetscCall(DMSetMatType(dm, typeName));
910863027abSJed Brown   PetscCall(PetscOptionsEnum("-dm_blocking_type", "Topological point or field node blocking", "DMSetBlockingType", DMBlockingTypes, (PetscEnum)dm->blocking_type, (PetscEnum *)&dm->blocking_type, NULL));
9119566063dSJacob Faibussowitsch   PetscCall(PetscOptionsEnum("-dm_is_coloring_type", "Global or local coloring of Jacobian", "DMSetISColoringType", ISColoringTypes, (PetscEnum)dm->coloringtype, (PetscEnum *)&dm->coloringtype, NULL));
9129566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt("-dm_bind_below", "Set the size threshold (in entries) below which the Vec is bound to the CPU", "VecBindToCPU", dm->bind_below, &dm->bind_below, &flg));
913eb9d3e4dSMatthew G. Knepley   PetscCall(PetscOptionsBool("-dm_ignore_perm_output", "Ignore the local section permutation on output", "DMGetOutputDM", dm->ignorePermOutput, &dm->ignorePermOutput, NULL));
914dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, setfromoptions, PetscOptionsObject);
915f9ba7244SBarry Smith   /* process any options handlers added with PetscObjectAddOptionsHandler() */
916dbbe0bcdSBarry Smith   PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)dm, PetscOptionsObject));
917d0609cedSBarry Smith   PetscOptionsEnd();
9183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
919d7bf68aeSBarry Smith }
920d7bf68aeSBarry Smith 
921ffeef943SBarry Smith /*@
922bb7acecfSBarry Smith   DMViewFromOptions - View a `DM` in a particular way based on a request in the options database
923fe2efc57SMark 
92420f4b53cSBarry Smith   Collective
925fe2efc57SMark 
926fe2efc57SMark   Input Parameters:
927bb7acecfSBarry Smith + dm   - the `DM` object
92820f4b53cSBarry Smith . obj  - optional object that provides the prefix for the options database (if `NULL` then the prefix in obj is used)
92960225df5SJacob Faibussowitsch - name - option string that is used to activate viewing
930fe2efc57SMark 
931fe2efc57SMark   Level: intermediate
932bb7acecfSBarry Smith 
933bb7acecfSBarry Smith   Note:
934bb7acecfSBarry Smith   See `PetscObjectViewFromOptions()` for a list of values that can be provided in the options database to determine how the `DM` is viewed
935bb7acecfSBarry Smith 
93660225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `PetscObjectViewFromOptions()`, `DMCreate()`
937fe2efc57SMark @*/
938d71ae5a4SJacob Faibussowitsch PetscErrorCode DMViewFromOptions(DM dm, PetscObject obj, const char name[])
939d71ae5a4SJacob Faibussowitsch {
940fe2efc57SMark   PetscFunctionBegin;
941fe2efc57SMark   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9429566063dSJacob Faibussowitsch   PetscCall(PetscObjectViewFromOptions((PetscObject)dm, obj, name));
9433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
944fe2efc57SMark }
945fe2efc57SMark 
946ffeef943SBarry Smith /*@
947bb7acecfSBarry Smith   DMView - Views a `DM`. Depending on the `PetscViewer` and its `PetscViewerFormat` it may print some ASCII information about the `DM` to the screen or a file or
948bb7acecfSBarry Smith   save the `DM` in a binary file to be loaded later or create a visualization of the `DM`
94947c6ae99SBarry Smith 
95020f4b53cSBarry Smith   Collective
95147c6ae99SBarry Smith 
952d8d19677SJose E. Roman   Input Parameters:
953bb7acecfSBarry Smith + dm - the `DM` object to view
95447c6ae99SBarry Smith - v  - the viewer
95547c6ae99SBarry Smith 
95620f4b53cSBarry Smith   Level: beginner
95720f4b53cSBarry Smith 
95873ff1848SBarry Smith   Note:
959bb7acecfSBarry Smith   Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` as the `PetscViewerFormat` one can save multiple `DMPLEX`
960bb7acecfSBarry Smith   meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()`
961bb7acecfSBarry Smith   before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object.
962cd7e8a5eSksagiyam 
9631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewer`, `PetscViewerFormat`, `PetscViewerSetFormat()`, `DMDestroy()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMLoad()`, `PetscObjectSetName()`
96447c6ae99SBarry Smith @*/
965d71ae5a4SJacob Faibussowitsch PetscErrorCode DMView(DM dm, PetscViewer v)
966d71ae5a4SJacob Faibussowitsch {
96732c0f0efSBarry Smith   PetscBool         isbinary;
96876a8abe0SBarry Smith   PetscMPIInt       size;
96976a8abe0SBarry Smith   PetscViewerFormat format;
97047c6ae99SBarry Smith 
97147c6ae99SBarry Smith   PetscFunctionBegin;
972171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
97348a46eb9SPierre Jolivet   if (!v) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &v));
974b1b135c8SBarry Smith   PetscValidHeaderSpecific(v, PETSC_VIEWER_CLASSID, 2);
97574903a4fSStefano Zampini   /* Ideally, we would like to have this test on.
97674903a4fSStefano Zampini      However, it currently breaks socket viz via GLVis.
97774903a4fSStefano Zampini      During DMView(parallel_mesh,glvis_viewer), each
97874903a4fSStefano Zampini      process opens a sequential ASCII socket to visualize
97974903a4fSStefano Zampini      the local mesh, and PetscObjectView(dm,local_socket)
98074903a4fSStefano Zampini      is internally called inside VecView_GLVis, incurring
98174903a4fSStefano Zampini      in an error here */
98274903a4fSStefano Zampini   /* PetscCheckSameComm(dm,1,v,2); */
9839566063dSJacob Faibussowitsch   PetscCall(PetscViewerCheckWritable(v));
984b1b135c8SBarry Smith 
9859566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(v, &format));
9869566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
9873ba16761SJacob Faibussowitsch   if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(PETSC_SUCCESS);
9889566063dSJacob Faibussowitsch   PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)dm, v));
9899566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)v, PETSCVIEWERBINARY, &isbinary));
99032c0f0efSBarry Smith   if (isbinary) {
99155849f57SBarry Smith     PetscInt classid = DM_FILE_CLASSID;
99232c0f0efSBarry Smith     char     type[256];
99332c0f0efSBarry Smith 
9949566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryWrite(v, &classid, 1, PETSC_INT));
995c6a7a370SJeremy L Thompson     PetscCall(PetscStrncpy(type, ((PetscObject)dm)->type_name, sizeof(type)));
9969566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryWrite(v, type, 256, PETSC_CHAR));
99732c0f0efSBarry Smith   }
998dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, view, v);
9993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
100047c6ae99SBarry Smith }
100147c6ae99SBarry Smith 
100247c6ae99SBarry Smith /*@
1003bb7acecfSBarry Smith   DMCreateGlobalVector - Creates a global vector from a `DM` object. A global vector is a parallel vector that has no duplicate values shared between MPI ranks,
1004bb7acecfSBarry Smith   that is it has no ghost locations.
100547c6ae99SBarry Smith 
100620f4b53cSBarry Smith   Collective
100747c6ae99SBarry Smith 
100847c6ae99SBarry Smith   Input Parameter:
1009bb7acecfSBarry Smith . dm - the `DM` object
101047c6ae99SBarry Smith 
101147c6ae99SBarry Smith   Output Parameter:
101247c6ae99SBarry Smith . vec - the global vector
101347c6ae99SBarry Smith 
1014073dac72SJed Brown   Level: beginner
101547c6ae99SBarry Smith 
10161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
1017bb7acecfSBarry Smith          `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()`
101847c6ae99SBarry Smith @*/
1019d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateGlobalVector(DM dm, Vec *vec)
1020d71ae5a4SJacob Faibussowitsch {
102147c6ae99SBarry Smith   PetscFunctionBegin;
1022171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10234f572ea9SToby Isaac   PetscAssertPointer(vec, 2);
1024dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createglobalvector, vec);
102576bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1026c6b011d8SStefano Zampini     DM vdm;
1027c6b011d8SStefano Zampini 
10289566063dSJacob Faibussowitsch     PetscCall(VecGetDM(*vec, &vdm));
10297a8be351SBarry Smith     PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name);
1030c6b011d8SStefano Zampini   }
10313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
103247c6ae99SBarry Smith }
103347c6ae99SBarry Smith 
103447c6ae99SBarry Smith /*@
1035bb7acecfSBarry Smith   DMCreateLocalVector - Creates a local vector from a `DM` object.
103647c6ae99SBarry Smith 
103747c6ae99SBarry Smith   Not Collective
103847c6ae99SBarry Smith 
103947c6ae99SBarry Smith   Input Parameter:
1040bb7acecfSBarry Smith . dm - the `DM` object
104147c6ae99SBarry Smith 
104247c6ae99SBarry Smith   Output Parameter:
104347c6ae99SBarry Smith . vec - the local vector
104447c6ae99SBarry Smith 
1045073dac72SJed Brown   Level: beginner
104647c6ae99SBarry Smith 
104720f4b53cSBarry Smith   Note:
1048bb7acecfSBarry Smith   A local vector usually has ghost locations that contain values that are owned by different MPI ranks. A global vector has no ghost locations.
1049bb7acecfSBarry Smith 
10501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
1051bb7acecfSBarry Smith          `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()`
105247c6ae99SBarry Smith @*/
1053d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLocalVector(DM dm, Vec *vec)
1054d71ae5a4SJacob Faibussowitsch {
105547c6ae99SBarry Smith   PetscFunctionBegin;
1056171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10574f572ea9SToby Isaac   PetscAssertPointer(vec, 2);
1058dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createlocalvector, vec);
105976bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1060c6b011d8SStefano Zampini     DM vdm;
1061c6b011d8SStefano Zampini 
10629566063dSJacob Faibussowitsch     PetscCall(VecGetDM(*vec, &vdm));
10637a8be351SBarry Smith     PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_LIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name);
1064c6b011d8SStefano Zampini   }
10653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
106647c6ae99SBarry Smith }
106747c6ae99SBarry Smith 
10681411c6eeSJed Brown /*@
1069bb7acecfSBarry Smith   DMGetLocalToGlobalMapping - Accesses the local-to-global mapping in a `DM`.
10701411c6eeSJed Brown 
107120f4b53cSBarry Smith   Collective
10721411c6eeSJed Brown 
10731411c6eeSJed Brown   Input Parameter:
1074bb7acecfSBarry Smith . dm - the `DM` that provides the mapping
10751411c6eeSJed Brown 
10761411c6eeSJed Brown   Output Parameter:
10771411c6eeSJed Brown . ltog - the mapping
10781411c6eeSJed Brown 
1079bb7acecfSBarry Smith   Level: advanced
10801411c6eeSJed Brown 
10811411c6eeSJed Brown   Notes:
1082bb7acecfSBarry Smith   The global to local mapping allows one to set values into the global vector or matrix using `VecSetValuesLocal()` and `MatSetValuesLocal()`
10831411c6eeSJed Brown 
1084bb7acecfSBarry Smith   Vectors obtained with  `DMCreateGlobalVector()` and matrices obtained with `DMCreateMatrix()` already contain the global mapping so you do
1085bb7acecfSBarry Smith   need to use this function with those objects.
1086bb7acecfSBarry Smith 
1087bb7acecfSBarry Smith   This mapping can then be used by `VecSetLocalToGlobalMapping()` or `MatSetLocalToGlobalMapping()`.
1088bb7acecfSBarry Smith 
108960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `VecSetLocalToGlobalMapping()`, `MatSetLocalToGlobalMapping()`,
1090bb7acecfSBarry Smith           `DMCreateMatrix()`
10911411c6eeSJed Brown @*/
1092d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalToGlobalMapping(DM dm, ISLocalToGlobalMapping *ltog)
1093d71ae5a4SJacob Faibussowitsch {
10940be3e97aSMatthew G. Knepley   PetscInt bs = -1, bsLocal[2], bsMinMax[2];
10951411c6eeSJed Brown 
10961411c6eeSJed Brown   PetscFunctionBegin;
10971411c6eeSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10984f572ea9SToby Isaac   PetscAssertPointer(ltog, 2);
10991411c6eeSJed Brown   if (!dm->ltogmap) {
110037d0c07bSMatthew G Knepley     PetscSection section, sectionGlobal;
110137d0c07bSMatthew G Knepley 
11029566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
110337d0c07bSMatthew G Knepley     if (section) {
1104a974ec88SMatthew G. Knepley       const PetscInt *cdofs;
110537d0c07bSMatthew G Knepley       PetscInt       *ltog;
1106ccf3bd66SMatthew G. Knepley       PetscInt        pStart, pEnd, n, p, k, l;
110737d0c07bSMatthew G Knepley 
11089566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalSection(dm, &sectionGlobal));
11099566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
11109566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetStorageSize(section, &n));
11119566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &ltog)); /* We want the local+overlap size */
111237d0c07bSMatthew G Knepley       for (p = pStart, l = 0; p < pEnd; ++p) {
1113e6befd46SJed Brown         PetscInt bdof, cdof, dof, off, c, cind;
111437d0c07bSMatthew G Knepley 
111537d0c07bSMatthew G Knepley         /* Should probably use constrained dofs */
11169566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(section, p, &dof));
11179566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintDof(section, p, &cdof));
11189566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintIndices(section, p, &cdofs));
11199566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(sectionGlobal, p, &off));
11201a7dc684SMatthew G. Knepley         /* If you have dofs, and constraints, and they are unequal, we set the blocksize to 1 */
11211a7dc684SMatthew G. Knepley         bdof = cdof && (dof - cdof) ? 1 : dof;
1122ad540459SPierre Jolivet         if (dof) bs = bs < 0 ? bdof : PetscGCD(bs, bdof);
11235227eafbSStefano Zampini 
1124e6befd46SJed Brown         for (c = 0, cind = 0; c < dof; ++c, ++l) {
11255227eafbSStefano Zampini           if (cind < cdof && c == cdofs[cind]) {
1126e6befd46SJed Brown             ltog[l] = off < 0 ? off - c : -(off + c + 1);
1127e6befd46SJed Brown             cind++;
1128e6befd46SJed Brown           } else {
11295227eafbSStefano Zampini             ltog[l] = (off < 0 ? -(off + 1) : off) + c - cind;
1130e6befd46SJed Brown           }
113137d0c07bSMatthew G Knepley         }
113237d0c07bSMatthew G Knepley       }
1133bff27382SMatthew G. Knepley       /* Must have same blocksize on all procs (some might have no points) */
11349371c9d4SSatish Balay       bsLocal[0] = bs < 0 ? PETSC_MAX_INT : bs;
11359371c9d4SSatish Balay       bsLocal[1] = bs;
11369566063dSJacob Faibussowitsch       PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)dm), bsLocal, bsMinMax));
11379371c9d4SSatish Balay       if (bsMinMax[0] != bsMinMax[1]) {
11389371c9d4SSatish Balay         bs = 1;
11399371c9d4SSatish Balay       } else {
11409371c9d4SSatish Balay         bs = bsMinMax[0];
11419371c9d4SSatish Balay       }
11427591dbb2SMatthew G. Knepley       bs = bs < 0 ? 1 : bs;
11437591dbb2SMatthew G. Knepley       /* Must reduce indices by blocksize */
1144ccf3bd66SMatthew G. Knepley       if (bs > 1) {
1145ca469d19SJed Brown         for (l = 0, k = 0; l < n; l += bs, ++k) {
1146ca469d19SJed Brown           // Integer division of negative values truncates toward zero(!), not toward negative infinity
1147ca469d19SJed Brown           ltog[k] = ltog[l] >= 0 ? ltog[l] / bs : -(-(ltog[l] + 1) / bs + 1);
1148ca469d19SJed Brown         }
1149ccf3bd66SMatthew G. Knepley         n /= bs;
1150ccf3bd66SMatthew G. Knepley       }
11519566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm), bs, n, ltog, PETSC_OWN_POINTER, &dm->ltogmap));
1152dbbe0bcdSBarry Smith     } else PetscUseTypeMethod(dm, getlocaltoglobalmapping);
115337d0c07bSMatthew G Knepley   }
11541411c6eeSJed Brown   *ltog = dm->ltogmap;
11553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11561411c6eeSJed Brown }
11571411c6eeSJed Brown 
11581411c6eeSJed Brown /*@
1159bb7acecfSBarry Smith   DMGetBlockSize - Gets the inherent block size associated with a `DM`
11601411c6eeSJed Brown 
11611411c6eeSJed Brown   Not Collective
11621411c6eeSJed Brown 
11631411c6eeSJed Brown   Input Parameter:
1164bb7acecfSBarry Smith . dm - the `DM` with block structure
11651411c6eeSJed Brown 
11661411c6eeSJed Brown   Output Parameter:
11671411c6eeSJed Brown . bs - the block size, 1 implies no exploitable block structure
11681411c6eeSJed Brown 
11691411c6eeSJed Brown   Level: intermediate
11701411c6eeSJed Brown 
117173ff1848SBarry Smith   Notes:
1172bb7acecfSBarry Smith   This might be the number of degrees of freedom at each grid point for a structured grid.
1173bb7acecfSBarry Smith 
1174bb7acecfSBarry Smith   Complex `DM` that represent multiphysics or staggered grids or mixed-methods do not generally have a single inherent block size, but
1175bb7acecfSBarry Smith   rather different locations in the vectors may have a different block size.
1176bb7acecfSBarry Smith 
11771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISCreateBlock()`, `VecSetBlockSize()`, `MatSetBlockSize()`, `DMGetLocalToGlobalMapping()`
11781411c6eeSJed Brown @*/
1179d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBlockSize(DM dm, PetscInt *bs)
1180d71ae5a4SJacob Faibussowitsch {
11811411c6eeSJed Brown   PetscFunctionBegin;
11821411c6eeSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11834f572ea9SToby Isaac   PetscAssertPointer(bs, 2);
11847a8be351SBarry Smith   PetscCheck(dm->bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM does not have enough information to provide a block size yet");
11851411c6eeSJed Brown   *bs = dm->bs;
11863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11871411c6eeSJed Brown }
11881411c6eeSJed Brown 
1189ffeef943SBarry Smith /*@
1190bb7acecfSBarry Smith   DMCreateInterpolation - Gets the interpolation matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by
1191bb7acecfSBarry Smith   `DMCreateGlobalVector()` on the coarse `DM` to similar vectors on the fine grid `DM`.
119247c6ae99SBarry Smith 
119320f4b53cSBarry Smith   Collective
119447c6ae99SBarry Smith 
1195d8d19677SJose E. Roman   Input Parameters:
1196bb7acecfSBarry Smith + dmc - the `DM` object
1197bb7acecfSBarry Smith - dmf - the second, finer `DM` object
119847c6ae99SBarry Smith 
1199d8d19677SJose E. Roman   Output Parameters:
120047c6ae99SBarry Smith + mat - the interpolation
1201b6971eaeSBarry Smith - vec - the scaling (optional, pass `NULL` if not needed), see `DMCreateInterpolationScale()`
120247c6ae99SBarry Smith 
120347c6ae99SBarry Smith   Level: developer
120447c6ae99SBarry Smith 
120595452b02SPatrick Sanan   Notes:
1206bb7acecfSBarry Smith   For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by
1207bb7acecfSBarry Smith   DMCoarsen(). The coordinates set into the `DMDA` are completely ignored in computing the interpolation.
1208d52bd9f3SBarry Smith 
1209bb7acecfSBarry Smith   For `DMDA` objects you can use this interpolation (more precisely the interpolation from the `DMGetCoordinateDM()`) to interpolate the mesh coordinate
1210bb7acecfSBarry Smith   vectors EXCEPT in the periodic case where it does not make sense since the coordinate vectors are not periodic.
121185afcc9aSBarry Smith 
12121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolationScale()`
121347c6ae99SBarry Smith @*/
1214d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolation(DM dmc, DM dmf, Mat *mat, Vec *vec)
1215d71ae5a4SJacob Faibussowitsch {
121647c6ae99SBarry Smith   PetscFunctionBegin;
1217a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
1218a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
12194f572ea9SToby Isaac   PetscAssertPointer(mat, 3);
12209566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateInterpolation, dmc, dmf, 0, 0));
1221dbbe0bcdSBarry Smith   PetscUseTypeMethod(dmc, createinterpolation, dmf, mat, vec);
12229566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateInterpolation, dmc, dmf, 0, 0));
12233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
122447c6ae99SBarry Smith }
122547c6ae99SBarry Smith 
12263ad4599aSBarry Smith /*@
1227a4e35b19SJacob Faibussowitsch   DMCreateInterpolationScale - Forms L = 1/(R*1) where 1 is the vector of all ones, and R is
1228a4e35b19SJacob Faibussowitsch   the transpose of the interpolation between the `DM`.
12292ed6491fSPatrick Sanan 
12302ed6491fSPatrick Sanan   Input Parameters:
1231bb7acecfSBarry Smith + dac - `DM` that defines a coarse mesh
1232bb7acecfSBarry Smith . daf - `DM` that defines a fine mesh
12332ed6491fSPatrick Sanan - mat - the restriction (or interpolation operator) from fine to coarse
12342ed6491fSPatrick Sanan 
12352ed6491fSPatrick Sanan   Output Parameter:
12362ed6491fSPatrick Sanan . scale - the scaled vector
12372ed6491fSPatrick Sanan 
1238bb7acecfSBarry Smith   Level: advanced
12392ed6491fSPatrick Sanan 
124073ff1848SBarry Smith   Note:
1241a4e35b19SJacob Faibussowitsch   xcoarse = diag(L)*R*xfine preserves scale and is thus suitable for state (versus residual)
1242a4e35b19SJacob Faibussowitsch   restriction. In other words xcoarse is the coarse representation of xfine.
1243a4e35b19SJacob Faibussowitsch 
124473ff1848SBarry Smith   Developer Note:
1245bb7acecfSBarry Smith   If the fine-scale `DMDA` has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()`
1246e9c74fd6SRichard Tran Mills   on the restriction/interpolation operator to set the bindingpropagates flag to true.
1247e9c74fd6SRichard Tran Mills 
124860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatRestrict()`, `MatInterpolate()`, `DMCreateInterpolation()`, `DMCreateRestriction()`, `DMCreateGlobalVector()`
12492ed6491fSPatrick Sanan @*/
1250d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolationScale(DM dac, DM daf, Mat mat, Vec *scale)
1251d71ae5a4SJacob Faibussowitsch {
12522ed6491fSPatrick Sanan   Vec         fine;
12532ed6491fSPatrick Sanan   PetscScalar one = 1.0;
12549704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA)
1255e9c74fd6SRichard Tran Mills   PetscBool bindingpropagates, isbound;
12569704db99SRichard Tran Mills #endif
12572ed6491fSPatrick Sanan 
12582ed6491fSPatrick Sanan   PetscFunctionBegin;
12599566063dSJacob Faibussowitsch   PetscCall(DMCreateGlobalVector(daf, &fine));
12609566063dSJacob Faibussowitsch   PetscCall(DMCreateGlobalVector(dac, scale));
12619566063dSJacob Faibussowitsch   PetscCall(VecSet(fine, one));
12629704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA)
12639704db99SRichard Tran Mills   /* If the 'fine' Vec is bound to the CPU, it makes sense to bind 'mat' as well.
12649704db99SRichard Tran Mills    * Note that we only do this for the CUDA case, right now, but if we add support for MatMultTranspose() via ViennaCL,
12659704db99SRichard Tran Mills    * we'll need to do it for that case, too.*/
12669566063dSJacob Faibussowitsch   PetscCall(VecGetBindingPropagates(fine, &bindingpropagates));
1267e9c74fd6SRichard Tran Mills   if (bindingpropagates) {
12689566063dSJacob Faibussowitsch     PetscCall(MatSetBindingPropagates(mat, PETSC_TRUE));
12699566063dSJacob Faibussowitsch     PetscCall(VecBoundToCPU(fine, &isbound));
12709566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(mat, isbound));
127183aa49f4SRichard Tran Mills   }
12729704db99SRichard Tran Mills #endif
12739566063dSJacob Faibussowitsch   PetscCall(MatRestrict(mat, fine, *scale));
12749566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&fine));
12759566063dSJacob Faibussowitsch   PetscCall(VecReciprocal(*scale));
12763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12772ed6491fSPatrick Sanan }
12782ed6491fSPatrick Sanan 
12792ed6491fSPatrick Sanan /*@
1280bb7acecfSBarry Smith   DMCreateRestriction - Gets restriction matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by
1281bb7acecfSBarry Smith   `DMCreateGlobalVector()` on the fine `DM` to similar vectors on the coarse grid `DM`.
12823ad4599aSBarry Smith 
128320f4b53cSBarry Smith   Collective
12843ad4599aSBarry Smith 
1285d8d19677SJose E. Roman   Input Parameters:
1286bb7acecfSBarry Smith + dmc - the `DM` object
1287bb7acecfSBarry Smith - dmf - the second, finer `DM` object
12883ad4599aSBarry Smith 
12893ad4599aSBarry Smith   Output Parameter:
12903ad4599aSBarry Smith . mat - the restriction
12913ad4599aSBarry Smith 
12923ad4599aSBarry Smith   Level: developer
12933ad4599aSBarry Smith 
1294bb7acecfSBarry Smith   Note:
1295bb7acecfSBarry Smith   This only works for `DMSTAG`. For many situations either the transpose of the operator obtained with `DMCreateInterpolation()` or that
1296bb7acecfSBarry Smith   matrix multiplied by the vector obtained with `DMCreateInterpolationScale()` provides the desired object.
12973ad4599aSBarry Smith 
12981cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRestrict()`, `DMInterpolate()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateInterpolation()`
12993ad4599aSBarry Smith @*/
1300d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateRestriction(DM dmc, DM dmf, Mat *mat)
1301d71ae5a4SJacob Faibussowitsch {
13023ad4599aSBarry Smith   PetscFunctionBegin;
1303a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
1304a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
13054f572ea9SToby Isaac   PetscAssertPointer(mat, 3);
13069566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateRestriction, dmc, dmf, 0, 0));
1307dbbe0bcdSBarry Smith   PetscUseTypeMethod(dmc, createrestriction, dmf, mat);
13089566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateRestriction, dmc, dmf, 0, 0));
13093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13103ad4599aSBarry Smith }
13113ad4599aSBarry Smith 
131247c6ae99SBarry Smith /*@
1313a4e35b19SJacob Faibussowitsch   DMCreateInjection - Gets injection matrix between two `DM` objects.
131447c6ae99SBarry Smith 
131520f4b53cSBarry Smith   Collective
131647c6ae99SBarry Smith 
1317d8d19677SJose E. Roman   Input Parameters:
1318bb7acecfSBarry Smith + dac - the `DM` object
1319bb7acecfSBarry Smith - daf - the second, finer `DM` object
132047c6ae99SBarry Smith 
132147c6ae99SBarry Smith   Output Parameter:
13226dbf9973SLawrence Mitchell . mat - the injection
132347c6ae99SBarry Smith 
132447c6ae99SBarry Smith   Level: developer
132547c6ae99SBarry Smith 
1326a4e35b19SJacob Faibussowitsch   Notes:
1327a4e35b19SJacob Faibussowitsch   This is an operator that applied to a vector obtained with `DMCreateGlobalVector()` on the
1328a4e35b19SJacob Faibussowitsch   fine grid maps the values to a vector on the vector on the coarse `DM` by simply selecting
1329a4e35b19SJacob Faibussowitsch   the values on the coarse grid points. This compares to the operator obtained by
1330a4e35b19SJacob Faibussowitsch   `DMCreateRestriction()` or the transpose of the operator obtained by
1331a4e35b19SJacob Faibussowitsch   `DMCreateInterpolation()` that uses a "local weighted average" of the values around the
1332a4e35b19SJacob Faibussowitsch   coarse grid point as the coarse grid value.
1333a4e35b19SJacob Faibussowitsch 
1334bb7acecfSBarry Smith   For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by
1335bb7acecfSBarry Smith   `DMCoarsen()`. The coordinates set into the `DMDA` are completely ignored in computing the injection.
133685afcc9aSBarry Smith 
13371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateInterpolation()`,
1338bb7acecfSBarry Smith           `DMCreateRestriction()`, `MatRestrict()`, `MatInterpolate()`
133947c6ae99SBarry Smith @*/
1340d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInjection(DM dac, DM daf, Mat *mat)
1341d71ae5a4SJacob Faibussowitsch {
134247c6ae99SBarry Smith   PetscFunctionBegin;
1343a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dac, DM_CLASSID, 1);
1344a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(daf, DM_CLASSID, 2);
13454f572ea9SToby Isaac   PetscAssertPointer(mat, 3);
13469566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateInjection, dac, daf, 0, 0));
1347dbbe0bcdSBarry Smith   PetscUseTypeMethod(dac, createinjection, daf, mat);
13489566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateInjection, dac, daf, 0, 0));
13493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
135047c6ae99SBarry Smith }
135147c6ae99SBarry Smith 
1352b412c318SBarry Smith /*@
1353bb7acecfSBarry Smith   DMCreateMassMatrix - Gets the mass matrix between two `DM` objects, M_ij = \int \phi_i \psi_j where the \phi are Galerkin basis functions for a
1354bb7acecfSBarry Smith   a Galerkin finite element model on the `DM`
1355bd041c0cSMatthew G. Knepley 
135620f4b53cSBarry Smith   Collective
1357bd041c0cSMatthew G. Knepley 
1358d8d19677SJose E. Roman   Input Parameters:
1359bb7acecfSBarry Smith + dmc - the target `DM` object
1360*8c1c0954SStefano Zampini - dmf - the source `DM` object, can be `NULL`
1361bd041c0cSMatthew G. Knepley 
1362bd041c0cSMatthew G. Knepley   Output Parameter:
1363b4937a87SMatthew G. Knepley . mat - the mass matrix
1364bd041c0cSMatthew G. Knepley 
1365bd041c0cSMatthew G. Knepley   Level: developer
1366bd041c0cSMatthew G. Knepley 
1367bb7acecfSBarry Smith   Notes:
1368bb7acecfSBarry Smith   For `DMPLEX` the finite element model for the `DM` must have been already provided.
1369bb7acecfSBarry Smith 
1370*8c1c0954SStefano Zampini   if `dmc` is `dmf` or `NULL`, then x^t M x is an approximation to the L2 norm of the vector x which is obtained by `DMCreateGlobalVector()`
1371bb7acecfSBarry Smith 
137242747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrixLumped()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()`
1373bd041c0cSMatthew G. Knepley @*/
1374d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrix(DM dmc, DM dmf, Mat *mat)
1375d71ae5a4SJacob Faibussowitsch {
1376bd041c0cSMatthew G. Knepley   PetscFunctionBegin;
1377b4937a87SMatthew G. Knepley   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
1378*8c1c0954SStefano Zampini   if (!dmf) dmf = dmc;
1379b4937a87SMatthew G. Knepley   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
13804f572ea9SToby Isaac   PetscAssertPointer(mat, 3);
1381*8c1c0954SStefano Zampini   PetscCall(PetscLogEventBegin(DM_CreateMassMatrix, dmc, dmf, 0, 0));
1382dbbe0bcdSBarry Smith   PetscUseTypeMethod(dmc, createmassmatrix, dmf, mat);
1383*8c1c0954SStefano Zampini   PetscCall(PetscLogEventEnd(DM_CreateMassMatrix, dmc, dmf, 0, 0));
13843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1385b4937a87SMatthew G. Knepley }
1386b4937a87SMatthew G. Knepley 
1387b4937a87SMatthew G. Knepley /*@
1388bb7acecfSBarry Smith   DMCreateMassMatrixLumped - Gets the lumped mass matrix for a given `DM`
1389b4937a87SMatthew G. Knepley 
139020f4b53cSBarry Smith   Collective
1391b4937a87SMatthew G. Knepley 
1392b4937a87SMatthew G. Knepley   Input Parameter:
1393bb7acecfSBarry Smith . dm - the `DM` object
1394b4937a87SMatthew G. Knepley 
1395b4937a87SMatthew G. Knepley   Output Parameter:
1396bb7acecfSBarry Smith . lm - the lumped mass matrix, which is a diagonal matrix, represented as a vector
1397b4937a87SMatthew G. Knepley 
1398b4937a87SMatthew G. Knepley   Level: developer
1399b4937a87SMatthew G. Knepley 
1400bb7acecfSBarry Smith   Note:
1401bb7acecfSBarry Smith   See `DMCreateMassMatrix()` for how to create the non-lumped version of the mass matrix.
1402bb7acecfSBarry Smith 
140360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrix()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()`
1404b4937a87SMatthew G. Knepley @*/
1405d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrixLumped(DM dm, Vec *lm)
1406d71ae5a4SJacob Faibussowitsch {
1407b4937a87SMatthew G. Knepley   PetscFunctionBegin;
1408b4937a87SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14094f572ea9SToby Isaac   PetscAssertPointer(lm, 2);
1410dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createmassmatrixlumped, lm);
14113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1412bd041c0cSMatthew G. Knepley }
1413bd041c0cSMatthew G. Knepley 
1414bd041c0cSMatthew G. Knepley /*@
1415bb7acecfSBarry Smith   DMCreateColoring - Gets coloring of a graph associated with the `DM`. Often the graph represents the operator matrix associated with the discretization
1416bb7acecfSBarry Smith   of a PDE on the `DM`.
141747c6ae99SBarry Smith 
141820f4b53cSBarry Smith   Collective
141947c6ae99SBarry Smith 
1420d8d19677SJose E. Roman   Input Parameters:
1421bb7acecfSBarry Smith + dm    - the `DM` object
1422bb7acecfSBarry Smith - ctype - `IS_COLORING_LOCAL` or `IS_COLORING_GLOBAL`
142347c6ae99SBarry Smith 
142447c6ae99SBarry Smith   Output Parameter:
142547c6ae99SBarry Smith . coloring - the coloring
142647c6ae99SBarry Smith 
14271bf8429eSBarry Smith   Level: developer
14281bf8429eSBarry Smith 
1429ec5066bdSBarry Smith   Notes:
1430bb7acecfSBarry Smith   Coloring of matrices can also be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
1431bb7acecfSBarry Smith   matrix comes from (what this function provides). In general using the mesh produces a more optimal coloring (fewer colors).
1432ec5066bdSBarry Smith 
1433bb7acecfSBarry Smith   This produces a coloring with the distance of 2, see `MatSetColoringDistance()` which can be used for efficiently computing Jacobians with `MatFDColoringCreate()`
14341bf8429eSBarry Smith   For `DMDA` in three dimensions with periodic boundary conditions the number of grid points in each dimension must be divisible by 2*stencil_width + 1,
14351bf8429eSBarry Smith   otherwise an error will be generated.
1436ec5066bdSBarry Smith 
14371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISColoring`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatType()`, `MatColoring`, `MatFDColoringCreate()`
1438aab9d709SJed Brown @*/
1439d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateColoring(DM dm, ISColoringType ctype, ISColoring *coloring)
1440d71ae5a4SJacob Faibussowitsch {
144147c6ae99SBarry Smith   PetscFunctionBegin;
1442171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14434f572ea9SToby Isaac   PetscAssertPointer(coloring, 3);
1444dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, getcoloring, ctype, coloring);
14453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
144647c6ae99SBarry Smith }
144747c6ae99SBarry Smith 
1448b412c318SBarry Smith /*@
1449bb7acecfSBarry Smith   DMCreateMatrix - Gets an empty matrix for a `DM` that is most commonly used to store the Jacobian of a discrete PDE operator.
145047c6ae99SBarry Smith 
145120f4b53cSBarry Smith   Collective
145247c6ae99SBarry Smith 
145347c6ae99SBarry Smith   Input Parameter:
1454bb7acecfSBarry Smith . dm - the `DM` object
145547c6ae99SBarry Smith 
145647c6ae99SBarry Smith   Output Parameter:
145747c6ae99SBarry Smith . mat - the empty Jacobian
145847c6ae99SBarry Smith 
145920f4b53cSBarry Smith   Options Database Key:
1460bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros
1461f27dd7c6SMatthew G. Knepley 
146220f4b53cSBarry Smith   Level: beginner
146320f4b53cSBarry Smith 
146495452b02SPatrick Sanan   Notes:
146595452b02SPatrick Sanan   This properly preallocates the number of nonzeros in the sparse matrix so you
146694013140SBarry Smith   do not need to do it yourself.
146794013140SBarry Smith 
146894013140SBarry Smith   By default it also sets the nonzero structure and puts in the zero entries. To prevent setting
1469bb7acecfSBarry Smith   the nonzero pattern call `DMSetMatrixPreallocateOnly()`
147094013140SBarry Smith 
1471bb7acecfSBarry Smith   For `DMDA`, when you call `MatView()` on this matrix it is displayed using the global natural ordering, NOT in the ordering used
147294013140SBarry Smith   internally by PETSc.
147394013140SBarry Smith 
1474bb7acecfSBarry Smith   For `DMDA`, in general it is easiest to use `MatSetValuesStencil()` or `MatSetValuesLocal()` to put values into the matrix because
1475bb7acecfSBarry Smith   `MatSetValues()` requires the indices for the global numbering for the `DMDA` which is complic`ated to compute
147694013140SBarry Smith 
14771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMSetMatType()`, `DMCreateMassMatrix()`
1478aab9d709SJed Brown @*/
1479d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMatrix(DM dm, Mat *mat)
1480d71ae5a4SJacob Faibussowitsch {
148147c6ae99SBarry Smith   PetscFunctionBegin;
1482171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14834f572ea9SToby Isaac   PetscAssertPointer(mat, 2);
14849566063dSJacob Faibussowitsch   PetscCall(MatInitializePackage());
14859566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateMatrix, 0, 0, 0, 0));
1486dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, creatematrix, mat);
148776bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1488c6b011d8SStefano Zampini     DM mdm;
1489c6b011d8SStefano Zampini 
14909566063dSJacob Faibussowitsch     PetscCall(MatGetDM(*mat, &mdm));
14917a8be351SBarry Smith     PetscCheck(mdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the matrix", ((PetscObject)dm)->type_name);
1492c6b011d8SStefano Zampini   }
1493e571a35bSMatthew G. Knepley   /* Handle nullspace and near nullspace */
1494e5e52638SMatthew G. Knepley   if (dm->Nf) {
1495e571a35bSMatthew G. Knepley     MatNullSpace nullSpace;
1496649ef022SMatthew Knepley     PetscInt     Nf, f;
1497e571a35bSMatthew G. Knepley 
14989566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
1499649ef022SMatthew Knepley     for (f = 0; f < Nf; ++f) {
1500649ef022SMatthew Knepley       if (dm->nullspaceConstructors[f]) {
15019566063dSJacob Faibussowitsch         PetscCall((*dm->nullspaceConstructors[f])(dm, f, f, &nullSpace));
15029566063dSJacob Faibussowitsch         PetscCall(MatSetNullSpace(*mat, nullSpace));
15039566063dSJacob Faibussowitsch         PetscCall(MatNullSpaceDestroy(&nullSpace));
1504649ef022SMatthew Knepley         break;
1505e571a35bSMatthew G. Knepley       }
1506649ef022SMatthew Knepley     }
1507649ef022SMatthew Knepley     for (f = 0; f < Nf; ++f) {
1508649ef022SMatthew Knepley       if (dm->nearnullspaceConstructors[f]) {
15099566063dSJacob Faibussowitsch         PetscCall((*dm->nearnullspaceConstructors[f])(dm, f, f, &nullSpace));
15109566063dSJacob Faibussowitsch         PetscCall(MatSetNearNullSpace(*mat, nullSpace));
15119566063dSJacob Faibussowitsch         PetscCall(MatNullSpaceDestroy(&nullSpace));
1512e571a35bSMatthew G. Knepley       }
1513e571a35bSMatthew G. Knepley     }
1514e571a35bSMatthew G. Knepley   }
15159566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateMatrix, 0, 0, 0, 0));
15163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
151747c6ae99SBarry Smith }
151847c6ae99SBarry Smith 
1519732e2eb9SMatthew G Knepley /*@
1520a4e35b19SJacob Faibussowitsch   DMSetMatrixPreallocateSkip - When `DMCreateMatrix()` is called the matrix sizes and
1521a4e35b19SJacob Faibussowitsch   `ISLocalToGlobalMapping` will be properly set, but the data structures to store values in the
1522a4e35b19SJacob Faibussowitsch   matrices will not be preallocated.
1523aa0f6e3cSJed Brown 
152420f4b53cSBarry Smith   Logically Collective
1525aa0f6e3cSJed Brown 
1526aa0f6e3cSJed Brown   Input Parameters:
1527bb7acecfSBarry Smith + dm   - the `DM`
1528bb7acecfSBarry Smith - skip - `PETSC_TRUE` to skip preallocation
1529aa0f6e3cSJed Brown 
1530aa0f6e3cSJed Brown   Level: developer
1531aa0f6e3cSJed Brown 
153273ff1848SBarry Smith   Note:
1533a4e35b19SJacob Faibussowitsch   This is most useful to reduce initialization costs when `MatSetPreallocationCOO()` and
1534a4e35b19SJacob Faibussowitsch   `MatSetValuesCOO()` will be used.
1535a4e35b19SJacob Faibussowitsch 
15361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateOnly()`
1537aa0f6e3cSJed Brown @*/
1538d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateSkip(DM dm, PetscBool skip)
1539d71ae5a4SJacob Faibussowitsch {
1540aa0f6e3cSJed Brown   PetscFunctionBegin;
1541aa0f6e3cSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1542aa0f6e3cSJed Brown   dm->prealloc_skip = skip;
15433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1544aa0f6e3cSJed Brown }
1545aa0f6e3cSJed Brown 
1546aa0f6e3cSJed Brown /*@
1547bb7acecfSBarry Smith   DMSetMatrixPreallocateOnly - When `DMCreateMatrix()` is called the matrix will be properly
1548732e2eb9SMatthew G Knepley   preallocated but the nonzero structure and zero values will not be set.
1549732e2eb9SMatthew G Knepley 
155020f4b53cSBarry Smith   Logically Collective
1551732e2eb9SMatthew G Knepley 
1552d8d19677SJose E. Roman   Input Parameters:
1553bb7acecfSBarry Smith + dm   - the `DM`
1554bb7acecfSBarry Smith - only - `PETSC_TRUE` if only want preallocation
1555732e2eb9SMatthew G Knepley 
155620f4b53cSBarry Smith   Options Database Key:
1557bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()`, `DMCreateMassMatrix()`, but do not fill it with zeros
1558f27dd7c6SMatthew G. Knepley 
155920f4b53cSBarry Smith   Level: developer
156020f4b53cSBarry Smith 
15611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateSkip()`
1562732e2eb9SMatthew G Knepley @*/
1563d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateOnly(DM dm, PetscBool only)
1564d71ae5a4SJacob Faibussowitsch {
1565732e2eb9SMatthew G Knepley   PetscFunctionBegin;
1566732e2eb9SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1567732e2eb9SMatthew G Knepley   dm->prealloc_only = only;
15683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1569732e2eb9SMatthew G Knepley }
1570732e2eb9SMatthew G Knepley 
1571b06ff27eSHong Zhang /*@
1572bb7acecfSBarry Smith   DMSetMatrixStructureOnly - When `DMCreateMatrix()` is called, the matrix structure will be created
1573bb7acecfSBarry Smith   but the array for numerical values will not be allocated.
1574b06ff27eSHong Zhang 
157520f4b53cSBarry Smith   Logically Collective
1576b06ff27eSHong Zhang 
1577d8d19677SJose E. Roman   Input Parameters:
1578bb7acecfSBarry Smith + dm   - the `DM`
1579da81f932SPierre Jolivet - only - `PETSC_TRUE` if you only want matrix structure
1580b06ff27eSHong Zhang 
1581b06ff27eSHong Zhang   Level: developer
1582bb7acecfSBarry Smith 
15831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMSetMatrixPreallocateSkip()`
1584b06ff27eSHong Zhang @*/
1585d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixStructureOnly(DM dm, PetscBool only)
1586d71ae5a4SJacob Faibussowitsch {
1587b06ff27eSHong Zhang   PetscFunctionBegin;
1588b06ff27eSHong Zhang   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1589b06ff27eSHong Zhang   dm->structure_only = only;
15903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1591b06ff27eSHong Zhang }
1592b06ff27eSHong Zhang 
1593863027abSJed Brown /*@
1594863027abSJed Brown   DMSetBlockingType - set the blocking granularity to be used for variable block size `DMCreateMatrix()` is called
1595863027abSJed Brown 
159620f4b53cSBarry Smith   Logically Collective
1597863027abSJed Brown 
1598863027abSJed Brown   Input Parameters:
1599863027abSJed Brown + dm    - the `DM`
1600863027abSJed Brown - btype - block by topological point or field node
1601863027abSJed Brown 
160220f4b53cSBarry Smith   Options Database Key:
16030e762ea3SJed Brown . -dm_blocking_type [topological_point, field_node] - use topological point blocking or field node blocking
1604863027abSJed Brown 
160520f4b53cSBarry Smith   Level: advanced
160620f4b53cSBarry Smith 
16071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()`
1608863027abSJed Brown @*/
1609863027abSJed Brown PetscErrorCode DMSetBlockingType(DM dm, DMBlockingType btype)
1610863027abSJed Brown {
1611863027abSJed Brown   PetscFunctionBegin;
1612863027abSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1613863027abSJed Brown   dm->blocking_type = btype;
16143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1615863027abSJed Brown }
1616863027abSJed Brown 
1617863027abSJed Brown /*@
1618863027abSJed Brown   DMGetBlockingType - get the blocking granularity to be used for variable block size `DMCreateMatrix()` is called
1619863027abSJed Brown 
1620863027abSJed Brown   Not Collective
1621863027abSJed Brown 
16222fe279fdSBarry Smith   Input Parameter:
1623863027abSJed Brown . dm - the `DM`
1624863027abSJed Brown 
16252fe279fdSBarry Smith   Output Parameter:
1626863027abSJed Brown . btype - block by topological point or field node
1627863027abSJed Brown 
1628863027abSJed Brown   Level: advanced
1629863027abSJed Brown 
16301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()`
1631863027abSJed Brown @*/
1632863027abSJed Brown PetscErrorCode DMGetBlockingType(DM dm, DMBlockingType *btype)
1633863027abSJed Brown {
1634863027abSJed Brown   PetscFunctionBegin;
1635863027abSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
16364f572ea9SToby Isaac   PetscAssertPointer(btype, 2);
1637863027abSJed Brown   *btype = dm->blocking_type;
16383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1639863027abSJed Brown }
1640863027abSJed Brown 
1641a89ea682SMatthew G Knepley /*@C
1642bb7acecfSBarry Smith   DMGetWorkArray - Gets a work array guaranteed to be at least the input size, restore with `DMRestoreWorkArray()`
1643a89ea682SMatthew G Knepley 
1644a89ea682SMatthew G Knepley   Not Collective
1645a89ea682SMatthew G Knepley 
1646a89ea682SMatthew G Knepley   Input Parameters:
1647bb7acecfSBarry Smith + dm    - the `DM` object
1648a5b23f4aSJose E. Roman . count - The minimum size
164920f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, or `MPIU_INT`)
1650a89ea682SMatthew G Knepley 
1651a89ea682SMatthew G Knepley   Output Parameter:
165260225df5SJacob Faibussowitsch . mem - the work array
1653a89ea682SMatthew G Knepley 
1654a89ea682SMatthew G Knepley   Level: developer
1655a89ea682SMatthew G Knepley 
165673ff1848SBarry Smith   Notes:
1657da81f932SPierre Jolivet   A `DM` may stash the array between instantiations so using this routine may be more efficient than calling `PetscMalloc()`
1658bb7acecfSBarry Smith 
1659bb7acecfSBarry Smith   The array may contain nonzero values
1660bb7acecfSBarry Smith 
16611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMRestoreWorkArray()`, `PetscMalloc()`
1662a89ea682SMatthew G Knepley @*/
1663d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem)
1664d71ae5a4SJacob Faibussowitsch {
1665aa1993deSMatthew G Knepley   DMWorkLink  link;
166669291d52SBarry Smith   PetscMPIInt dsize;
1667a89ea682SMatthew G Knepley 
1668a89ea682SMatthew G Knepley   PetscFunctionBegin;
1669a89ea682SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
16704f572ea9SToby Isaac   PetscAssertPointer(mem, 4);
1671442f3b32SStefano Zampini   if (!count) {
1672442f3b32SStefano Zampini     *(void **)mem = NULL;
1673442f3b32SStefano Zampini     PetscFunctionReturn(PETSC_SUCCESS);
1674442f3b32SStefano Zampini   }
1675aa1993deSMatthew G Knepley   if (dm->workin) {
1676aa1993deSMatthew G Knepley     link       = dm->workin;
1677aa1993deSMatthew G Knepley     dm->workin = dm->workin->next;
1678aa1993deSMatthew G Knepley   } else {
16794dfa11a4SJacob Faibussowitsch     PetscCall(PetscNew(&link));
1680a89ea682SMatthew G Knepley   }
1681b77fa653SStefano Zampini   /* Avoid MPI_Type_size for most used datatypes
1682b77fa653SStefano Zampini      Get size directly */
1683b77fa653SStefano Zampini   if (dtype == MPIU_INT) dsize = sizeof(PetscInt);
1684b77fa653SStefano Zampini   else if (dtype == MPIU_REAL) dsize = sizeof(PetscReal);
1685b77fa653SStefano Zampini #if defined(PETSC_USE_64BIT_INDICES)
1686b77fa653SStefano Zampini   else if (dtype == MPI_INT) dsize = sizeof(int);
1687b77fa653SStefano Zampini #endif
1688b77fa653SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1689b77fa653SStefano Zampini   else if (dtype == MPIU_SCALAR) dsize = sizeof(PetscScalar);
1690b77fa653SStefano Zampini #endif
1691b77fa653SStefano Zampini   else PetscCallMPI(MPI_Type_size(dtype, &dsize));
1692b77fa653SStefano Zampini 
16935056fcd2SBarry Smith   if (((size_t)dsize * count) > link->bytes) {
16949566063dSJacob Faibussowitsch     PetscCall(PetscFree(link->mem));
16959566063dSJacob Faibussowitsch     PetscCall(PetscMalloc(dsize * count, &link->mem));
1696854ce69bSBarry Smith     link->bytes = dsize * count;
1697aa1993deSMatthew G Knepley   }
1698aa1993deSMatthew G Knepley   link->next  = dm->workout;
1699aa1993deSMatthew G Knepley   dm->workout = link;
1700cea3dcb8SSatish Balay #if defined(__MEMCHECK_H) && (defined(PLAT_amd64_linux) || defined(PLAT_x86_linux) || defined(PLAT_amd64_darwin))
170100d952a4SJed Brown   VALGRIND_MAKE_MEM_NOACCESS((char *)link->mem + (size_t)dsize * count, link->bytes - (size_t)dsize * count);
170200d952a4SJed Brown   VALGRIND_MAKE_MEM_UNDEFINED(link->mem, (size_t)dsize * count);
170300d952a4SJed Brown #endif
1704aa1993deSMatthew G Knepley   *(void **)mem = link->mem;
17053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1706a89ea682SMatthew G Knepley }
1707a89ea682SMatthew G Knepley 
1708aa1993deSMatthew G Knepley /*@C
1709bb7acecfSBarry Smith   DMRestoreWorkArray - Restores a work array obtained with `DMCreateWorkArray()`
1710aa1993deSMatthew G Knepley 
1711aa1993deSMatthew G Knepley   Not Collective
1712aa1993deSMatthew G Knepley 
1713aa1993deSMatthew G Knepley   Input Parameters:
1714bb7acecfSBarry Smith + dm    - the `DM` object
1715a5b23f4aSJose E. Roman . count - The minimum size
171620f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, `MPIU_INT`
1717aa1993deSMatthew G Knepley 
1718aa1993deSMatthew G Knepley   Output Parameter:
171960225df5SJacob Faibussowitsch . mem - the work array
1720aa1993deSMatthew G Knepley 
1721aa1993deSMatthew G Knepley   Level: developer
1722aa1993deSMatthew G Knepley 
172373ff1848SBarry Smith   Developer Note:
1724bb7acecfSBarry Smith   count and dtype are ignored, they are only needed for `DMGetWorkArray()`
1725147403d9SBarry Smith 
17261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMGetWorkArray()`
1727aa1993deSMatthew G Knepley @*/
1728d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestoreWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem)
1729d71ae5a4SJacob Faibussowitsch {
1730aa1993deSMatthew G Knepley   DMWorkLink *p, link;
1731aa1993deSMatthew G Knepley 
1732aa1993deSMatthew G Knepley   PetscFunctionBegin;
1733aa1993deSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
17344f572ea9SToby Isaac   PetscAssertPointer(mem, 4);
1735a4e35b19SJacob Faibussowitsch   (void)count;
1736a4e35b19SJacob Faibussowitsch   (void)dtype;
1737442f3b32SStefano Zampini   if (!*(void **)mem) PetscFunctionReturn(PETSC_SUCCESS);
1738aa1993deSMatthew G Knepley   for (p = &dm->workout; (link = *p); p = &link->next) {
1739aa1993deSMatthew G Knepley     if (link->mem == *(void **)mem) {
1740aa1993deSMatthew G Knepley       *p            = link->next;
1741aa1993deSMatthew G Knepley       link->next    = dm->workin;
1742aa1993deSMatthew G Knepley       dm->workin    = link;
17430298fd71SBarry Smith       *(void **)mem = NULL;
17443ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1745aa1993deSMatthew G Knepley     }
1746aa1993deSMatthew G Knepley   }
1747aa1993deSMatthew G Knepley   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Array was not checked out");
1748aa1993deSMatthew G Knepley }
1749e7c4fc90SDmitry Karpeev 
17508cda7954SMatthew G. Knepley /*@C
1751bb7acecfSBarry Smith   DMSetNullSpaceConstructor - Provide a callback function which constructs the nullspace for a given field, defined with `DMAddField()`, when function spaces
1752bb7acecfSBarry Smith   are joined or split, such as in `DMCreateSubDM()`
17538cda7954SMatthew G. Knepley 
175420f4b53cSBarry Smith   Logically Collective; No Fortran Support
17558cda7954SMatthew G. Knepley 
17568cda7954SMatthew G. Knepley   Input Parameters:
1757bb7acecfSBarry Smith + dm     - The `DM`
17588cda7954SMatthew G. Knepley . field  - The field number for the nullspace
17598cda7954SMatthew G. Knepley - nullsp - A callback to create the nullspace
17608cda7954SMatthew G. Knepley 
176120f4b53cSBarry Smith   Calling sequence of `nullsp`:
1762bb7acecfSBarry Smith + dm        - The present `DM`
1763bb7acecfSBarry Smith . origField - The field number given above, in the original `DM`
1764147403d9SBarry Smith . field     - The field number in dm
1765147403d9SBarry Smith - nullSpace - The nullspace for the given field
17668cda7954SMatthew G. Knepley 
176749762cbcSSatish Balay   Level: intermediate
176849762cbcSSatish Balay 
17691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
1770147403d9SBarry Smith @*/
1771a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1772d71ae5a4SJacob Faibussowitsch {
1773435a35e8SMatthew G Knepley   PetscFunctionBegin;
1774435a35e8SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
17757a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1776435a35e8SMatthew G Knepley   dm->nullspaceConstructors[field] = nullsp;
17773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1778435a35e8SMatthew G Knepley }
1779435a35e8SMatthew G Knepley 
17808cda7954SMatthew G. Knepley /*@C
1781bb7acecfSBarry Smith   DMGetNullSpaceConstructor - Return the callback function which constructs the nullspace for a given field, defined with `DMAddField()`
17828cda7954SMatthew G. Knepley 
178320f4b53cSBarry Smith   Not Collective; No Fortran Support
17848cda7954SMatthew G. Knepley 
17858cda7954SMatthew G. Knepley   Input Parameters:
1786bb7acecfSBarry Smith + dm    - The `DM`
17878cda7954SMatthew G. Knepley - field - The field number for the nullspace
17888cda7954SMatthew G. Knepley 
17898cda7954SMatthew G. Knepley   Output Parameter:
17908cda7954SMatthew G. Knepley . nullsp - A callback to create the nullspace
17918cda7954SMatthew G. Knepley 
179220f4b53cSBarry Smith   Calling sequence of `nullsp`:
1793147403d9SBarry Smith + dm        - The present DM
1794147403d9SBarry Smith . origField - The field number given above, in the original DM
1795147403d9SBarry Smith . field     - The field number in dm
1796147403d9SBarry Smith - nullSpace - The nullspace for the given field
17978cda7954SMatthew G. Knepley 
179849762cbcSSatish Balay   Level: intermediate
179949762cbcSSatish Balay 
18001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
1801147403d9SBarry Smith @*/
1802a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1803d71ae5a4SJacob Faibussowitsch {
18040a50eb56SMatthew G. Knepley   PetscFunctionBegin;
18050a50eb56SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
18064f572ea9SToby Isaac   PetscAssertPointer(nullsp, 3);
18077a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
18080a50eb56SMatthew G. Knepley   *nullsp = dm->nullspaceConstructors[field];
18093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18100a50eb56SMatthew G. Knepley }
18110a50eb56SMatthew G. Knepley 
18128cda7954SMatthew G. Knepley /*@C
1813bb7acecfSBarry Smith   DMSetNearNullSpaceConstructor - Provide a callback function which constructs the near-nullspace for a given field, defined with `DMAddField()`
18148cda7954SMatthew G. Knepley 
181520f4b53cSBarry Smith   Logically Collective; No Fortran Support
18168cda7954SMatthew G. Knepley 
18178cda7954SMatthew G. Knepley   Input Parameters:
1818bb7acecfSBarry Smith + dm     - The `DM`
18198cda7954SMatthew G. Knepley . field  - The field number for the nullspace
18208cda7954SMatthew G. Knepley - nullsp - A callback to create the near-nullspace
18218cda7954SMatthew G. Knepley 
182220f4b53cSBarry Smith   Calling sequence of `nullsp`:
1823bb7acecfSBarry Smith + dm        - The present `DM`
1824bb7acecfSBarry Smith . origField - The field number given above, in the original `DM`
1825147403d9SBarry Smith . field     - The field number in dm
1826147403d9SBarry Smith - nullSpace - The nullspace for the given field
18278cda7954SMatthew G. Knepley 
182849762cbcSSatish Balay   Level: intermediate
182949762cbcSSatish Balay 
18301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`,
1831bb7acecfSBarry Smith           `MatNullSpace`
1832147403d9SBarry Smith @*/
1833a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1834d71ae5a4SJacob Faibussowitsch {
1835f9d4088aSMatthew G. Knepley   PetscFunctionBegin;
1836f9d4088aSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
18377a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1838f9d4088aSMatthew G. Knepley   dm->nearnullspaceConstructors[field] = nullsp;
18393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1840f9d4088aSMatthew G. Knepley }
1841f9d4088aSMatthew G. Knepley 
18428cda7954SMatthew G. Knepley /*@C
1843bb7acecfSBarry Smith   DMGetNearNullSpaceConstructor - Return the callback function which constructs the near-nullspace for a given field, defined with `DMAddField()`
18448cda7954SMatthew G. Knepley 
184520f4b53cSBarry Smith   Not Collective; No Fortran Support
18468cda7954SMatthew G. Knepley 
18478cda7954SMatthew G. Knepley   Input Parameters:
1848bb7acecfSBarry Smith + dm    - The `DM`
18498cda7954SMatthew G. Knepley - field - The field number for the nullspace
18508cda7954SMatthew G. Knepley 
18518cda7954SMatthew G. Knepley   Output Parameter:
18528cda7954SMatthew G. Knepley . nullsp - A callback to create the near-nullspace
18538cda7954SMatthew G. Knepley 
185420f4b53cSBarry Smith   Calling sequence of `nullsp`:
1855bb7acecfSBarry Smith + dm        - The present `DM`
1856bb7acecfSBarry Smith . origField - The field number given above, in the original `DM`
1857147403d9SBarry Smith . field     - The field number in dm
1858147403d9SBarry Smith - nullSpace - The nullspace for the given field
18598cda7954SMatthew G. Knepley 
186049762cbcSSatish Balay   Level: intermediate
186149762cbcSSatish Balay 
18621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`,
1863bb7acecfSBarry Smith           `MatNullSpace`, `DMCreateSuperDM()`
1864147403d9SBarry Smith @*/
1865a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1866d71ae5a4SJacob Faibussowitsch {
1867f9d4088aSMatthew G. Knepley   PetscFunctionBegin;
1868f9d4088aSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
18694f572ea9SToby Isaac   PetscAssertPointer(nullsp, 3);
18707a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1871f9d4088aSMatthew G. Knepley   *nullsp = dm->nearnullspaceConstructors[field];
18723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1873f9d4088aSMatthew G. Knepley }
1874f9d4088aSMatthew G. Knepley 
18754f3b5142SJed Brown /*@C
1876bb7acecfSBarry Smith   DMCreateFieldIS - Creates a set of `IS` objects with the global indices of dofs for each field defined with `DMAddField()`
18774d343eeaSMatthew G Knepley 
187820f4b53cSBarry Smith   Not Collective; No Fortran Support
18794d343eeaSMatthew G Knepley 
18804d343eeaSMatthew G Knepley   Input Parameter:
1881bb7acecfSBarry Smith . dm - the `DM` object
18824d343eeaSMatthew G Knepley 
18834d343eeaSMatthew G Knepley   Output Parameters:
188420f4b53cSBarry Smith + numFields  - The number of fields (or `NULL` if not requested)
188520f4b53cSBarry Smith . fieldNames - The number of each field (or `NULL` if not requested)
188620f4b53cSBarry Smith - fields     - The global indices for each field (or `NULL` if not requested)
18874d343eeaSMatthew G Knepley 
18884d343eeaSMatthew G Knepley   Level: intermediate
18894d343eeaSMatthew G Knepley 
1890bb7acecfSBarry Smith   Note:
189173ff1848SBarry Smith   The user is responsible for freeing all requested arrays. In particular, every entry of `fieldNames` should be freed with
189273ff1848SBarry Smith   `PetscFree()`, every entry of `fields` should be destroyed with `ISDestroy()`, and both arrays should be freed with
1893bb7acecfSBarry Smith   `PetscFree()`.
189421c9b008SJed Brown 
189573ff1848SBarry Smith   Developer Note:
1896bb7acecfSBarry Smith   It is not clear why both this function and `DMCreateFieldDecomposition()` exist. Having two seems redundant and confusing. This function should
1897bb7acecfSBarry Smith   likely be removed.
1898bb7acecfSBarry Smith 
18991cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
1900bb7acecfSBarry Smith           `DMCreateFieldDecomposition()`
19014d343eeaSMatthew G Knepley @*/
1902d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldIS(DM dm, PetscInt *numFields, char ***fieldNames, IS **fields)
1903d71ae5a4SJacob Faibussowitsch {
190437d0c07bSMatthew G Knepley   PetscSection section, sectionGlobal;
19054d343eeaSMatthew G Knepley 
19064d343eeaSMatthew G Knepley   PetscFunctionBegin;
19074d343eeaSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
190869ca1f37SDmitry Karpeev   if (numFields) {
19094f572ea9SToby Isaac     PetscAssertPointer(numFields, 2);
191069ca1f37SDmitry Karpeev     *numFields = 0;
191169ca1f37SDmitry Karpeev   }
191237d0c07bSMatthew G Knepley   if (fieldNames) {
19134f572ea9SToby Isaac     PetscAssertPointer(fieldNames, 3);
19140298fd71SBarry Smith     *fieldNames = NULL;
191569ca1f37SDmitry Karpeev   }
191669ca1f37SDmitry Karpeev   if (fields) {
19174f572ea9SToby Isaac     PetscAssertPointer(fields, 4);
19180298fd71SBarry Smith     *fields = NULL;
191969ca1f37SDmitry Karpeev   }
19209566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
192137d0c07bSMatthew G Knepley   if (section) {
19223a544194SStefano Zampini     PetscInt *fieldSizes, *fieldNc, **fieldIndices;
192337d0c07bSMatthew G Knepley     PetscInt  nF, f, pStart, pEnd, p;
192437d0c07bSMatthew G Knepley 
19259566063dSJacob Faibussowitsch     PetscCall(DMGetGlobalSection(dm, &sectionGlobal));
19269566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetNumFields(section, &nF));
19279566063dSJacob Faibussowitsch     PetscCall(PetscMalloc3(nF, &fieldSizes, nF, &fieldNc, nF, &fieldIndices));
19289566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd));
192937d0c07bSMatthew G Knepley     for (f = 0; f < nF; ++f) {
193037d0c07bSMatthew G Knepley       fieldSizes[f] = 0;
19319566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldComponents(section, f, &fieldNc[f]));
193237d0c07bSMatthew G Knepley     }
193337d0c07bSMatthew G Knepley     for (p = pStart; p < pEnd; ++p) {
193437d0c07bSMatthew G Knepley       PetscInt gdof;
193537d0c07bSMatthew G Knepley 
19369566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof));
193737d0c07bSMatthew G Knepley       if (gdof > 0) {
193837d0c07bSMatthew G Knepley         for (f = 0; f < nF; ++f) {
19393a544194SStefano Zampini           PetscInt fdof, fcdof, fpdof;
194037d0c07bSMatthew G Knepley 
19419566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof));
19429566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof));
19433a544194SStefano Zampini           fpdof = fdof - fcdof;
19443a544194SStefano Zampini           if (fpdof && fpdof != fieldNc[f]) {
19453a544194SStefano Zampini             /* Layout does not admit a pointwise block size */
19463a544194SStefano Zampini             fieldNc[f] = 1;
19473a544194SStefano Zampini           }
19483a544194SStefano Zampini           fieldSizes[f] += fpdof;
194937d0c07bSMatthew G Knepley         }
195037d0c07bSMatthew G Knepley       }
195137d0c07bSMatthew G Knepley     }
195237d0c07bSMatthew G Knepley     for (f = 0; f < nF; ++f) {
19539566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(fieldSizes[f], &fieldIndices[f]));
195437d0c07bSMatthew G Knepley       fieldSizes[f] = 0;
195537d0c07bSMatthew G Knepley     }
195637d0c07bSMatthew G Knepley     for (p = pStart; p < pEnd; ++p) {
195737d0c07bSMatthew G Knepley       PetscInt gdof, goff;
195837d0c07bSMatthew G Knepley 
19599566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof));
196037d0c07bSMatthew G Knepley       if (gdof > 0) {
19619566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(sectionGlobal, p, &goff));
196237d0c07bSMatthew G Knepley         for (f = 0; f < nF; ++f) {
196337d0c07bSMatthew G Knepley           PetscInt fdof, fcdof, fc;
196437d0c07bSMatthew G Knepley 
19659566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof));
19669566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof));
1967ad540459SPierre Jolivet           for (fc = 0; fc < fdof - fcdof; ++fc, ++fieldSizes[f]) fieldIndices[f][fieldSizes[f]] = goff++;
196837d0c07bSMatthew G Knepley         }
196937d0c07bSMatthew G Knepley       }
197037d0c07bSMatthew G Knepley     }
19718865f1eaSKarl Rupp     if (numFields) *numFields = nF;
197237d0c07bSMatthew G Knepley     if (fieldNames) {
19739566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nF, fieldNames));
197437d0c07bSMatthew G Knepley       for (f = 0; f < nF; ++f) {
197537d0c07bSMatthew G Knepley         const char *fieldName;
197637d0c07bSMatthew G Knepley 
19779566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetFieldName(section, f, &fieldName));
19789566063dSJacob Faibussowitsch         PetscCall(PetscStrallocpy(fieldName, (char **)&(*fieldNames)[f]));
197937d0c07bSMatthew G Knepley       }
198037d0c07bSMatthew G Knepley     }
198137d0c07bSMatthew G Knepley     if (fields) {
19829566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nF, fields));
198337d0c07bSMatthew G Knepley       for (f = 0; f < nF; ++f) {
19843a544194SStefano Zampini         PetscInt bs, in[2], out[2];
19853a544194SStefano Zampini 
19869566063dSJacob Faibussowitsch         PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), fieldSizes[f], fieldIndices[f], PETSC_OWN_POINTER, &(*fields)[f]));
19873a544194SStefano Zampini         in[0] = -fieldNc[f];
19883a544194SStefano Zampini         in[1] = fieldNc[f];
19891c2dc1cbSBarry Smith         PetscCall(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm)));
19903a544194SStefano Zampini         bs = (-out[0] == out[1]) ? out[1] : 1;
19919566063dSJacob Faibussowitsch         PetscCall(ISSetBlockSize((*fields)[f], bs));
199237d0c07bSMatthew G Knepley       }
199337d0c07bSMatthew G Knepley     }
19949566063dSJacob Faibussowitsch     PetscCall(PetscFree3(fieldSizes, fieldNc, fieldIndices));
1995dbbe0bcdSBarry Smith   } else PetscTryTypeMethod(dm, createfieldis, numFields, fieldNames, fields);
19963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
19974d343eeaSMatthew G Knepley }
19984d343eeaSMatthew G Knepley 
199916621825SDmitry Karpeev /*@C
2000bb7acecfSBarry Smith   DMCreateFieldDecomposition - Returns a list of `IS` objects defining a decomposition of a problem into subproblems
2001a4e35b19SJacob Faibussowitsch   corresponding to different fields.
2002e7c4fc90SDmitry Karpeev 
200320f4b53cSBarry Smith   Not Collective; No Fortran Support
2004e7c4fc90SDmitry Karpeev 
2005e7c4fc90SDmitry Karpeev   Input Parameter:
2006bb7acecfSBarry Smith . dm - the `DM` object
2007e7c4fc90SDmitry Karpeev 
2008e7c4fc90SDmitry Karpeev   Output Parameters:
200920f4b53cSBarry Smith + len      - The number of fields (or `NULL` if not requested)
201020f4b53cSBarry Smith . namelist - The name for each field (or `NULL` if not requested)
201120f4b53cSBarry Smith . islist   - The global indices for each field (or `NULL` if not requested)
201220f4b53cSBarry Smith - dmlist   - The `DM`s for each field subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined)
2013e7c4fc90SDmitry Karpeev 
2014e7c4fc90SDmitry Karpeev   Level: intermediate
2015e7c4fc90SDmitry Karpeev 
2016a4e35b19SJacob Faibussowitsch   Notes:
2017a4e35b19SJacob Faibussowitsch   Each `IS` contains the global indices of the dofs of the corresponding field, defined by
2018a4e35b19SJacob Faibussowitsch   `DMAddField()`. The optional list of `DM`s define the `DM` for each subproblem.
2019a4e35b19SJacob Faibussowitsch 
2020a4e35b19SJacob Faibussowitsch   The same as `DMCreateFieldIS()` but also returns a `DM` for each field.
2021a4e35b19SJacob Faibussowitsch 
202273ff1848SBarry Smith   The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with
202373ff1848SBarry Smith   `PetscFree()`, every entry of `islist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`,
2024bb7acecfSBarry Smith   and all of the arrays should be freed with `PetscFree()`.
2025e7c4fc90SDmitry Karpeev 
202660225df5SJacob Faibussowitsch   Developer Notes:
2027bb7acecfSBarry Smith   It is not clear why this function and `DMCreateFieldIS()` exist. Having two seems redundant and confusing.
2028bb7acecfSBarry Smith 
202973ff1848SBarry Smith   Unlike  `DMRefine()`, `DMCoarsen()`, and `DMCreateDomainDecomposition()` this provides no mechanism to provide hooks that are called after the
203073ff1848SBarry Smith   decomposition is computed.
203173ff1848SBarry Smith 
203273ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMCreateFieldIS()`, `DMCreateSubDM()`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`
2033e7c4fc90SDmitry Karpeev @*/
2034d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldDecomposition(DM dm, PetscInt *len, char ***namelist, IS **islist, DM **dmlist)
2035d71ae5a4SJacob Faibussowitsch {
2036e7c4fc90SDmitry Karpeev   PetscFunctionBegin;
2037e7c4fc90SDmitry Karpeev   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
20388865f1eaSKarl Rupp   if (len) {
20394f572ea9SToby Isaac     PetscAssertPointer(len, 2);
20408865f1eaSKarl Rupp     *len = 0;
20418865f1eaSKarl Rupp   }
20428865f1eaSKarl Rupp   if (namelist) {
20434f572ea9SToby Isaac     PetscAssertPointer(namelist, 3);
2044ea78f98cSLisandro Dalcin     *namelist = NULL;
20458865f1eaSKarl Rupp   }
20468865f1eaSKarl Rupp   if (islist) {
20474f572ea9SToby Isaac     PetscAssertPointer(islist, 4);
2048ea78f98cSLisandro Dalcin     *islist = NULL;
20498865f1eaSKarl Rupp   }
20508865f1eaSKarl Rupp   if (dmlist) {
20514f572ea9SToby Isaac     PetscAssertPointer(dmlist, 5);
2052ea78f98cSLisandro Dalcin     *dmlist = NULL;
20538865f1eaSKarl Rupp   }
2054f3f0edfdSDmitry Karpeev   /*
2055f3f0edfdSDmitry Karpeev    Is it a good idea to apply the following check across all impls?
2056f3f0edfdSDmitry Karpeev    Perhaps some impls can have a well-defined decomposition before DMSetUp?
2057f3f0edfdSDmitry Karpeev    This, however, follows the general principle that accessors are not well-behaved until the object is set up.
2058f3f0edfdSDmitry Karpeev    */
20597a8be351SBarry Smith   PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp");
206016621825SDmitry Karpeev   if (!dm->ops->createfielddecomposition) {
2061435a35e8SMatthew G Knepley     PetscSection section;
2062435a35e8SMatthew G Knepley     PetscInt     numFields, f;
2063435a35e8SMatthew G Knepley 
20649566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
20659566063dSJacob Faibussowitsch     if (section) PetscCall(PetscSectionGetNumFields(section, &numFields));
2066435a35e8SMatthew G Knepley     if (section && numFields && dm->ops->createsubdm) {
2067f25d98f1SMatthew G. Knepley       if (len) *len = numFields;
20689566063dSJacob Faibussowitsch       if (namelist) PetscCall(PetscMalloc1(numFields, namelist));
20699566063dSJacob Faibussowitsch       if (islist) PetscCall(PetscMalloc1(numFields, islist));
20709566063dSJacob Faibussowitsch       if (dmlist) PetscCall(PetscMalloc1(numFields, dmlist));
2071435a35e8SMatthew G Knepley       for (f = 0; f < numFields; ++f) {
2072435a35e8SMatthew G Knepley         const char *fieldName;
2073435a35e8SMatthew G Knepley 
20749566063dSJacob Faibussowitsch         PetscCall(DMCreateSubDM(dm, 1, &f, islist ? &(*islist)[f] : NULL, dmlist ? &(*dmlist)[f] : NULL));
207503dc3394SMatthew G. Knepley         if (namelist) {
20769566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldName(section, f, &fieldName));
20779566063dSJacob Faibussowitsch           PetscCall(PetscStrallocpy(fieldName, (char **)&(*namelist)[f]));
2078435a35e8SMatthew G Knepley         }
207903dc3394SMatthew G. Knepley       }
2080435a35e8SMatthew G Knepley     } else {
20819566063dSJacob Faibussowitsch       PetscCall(DMCreateFieldIS(dm, len, namelist, islist));
2082e7c4fc90SDmitry Karpeev       /* By default there are no DMs associated with subproblems. */
20830298fd71SBarry Smith       if (dmlist) *dmlist = NULL;
2084e7c4fc90SDmitry Karpeev     }
2085dbbe0bcdSBarry Smith   } else PetscUseTypeMethod(dm, createfielddecomposition, len, namelist, islist, dmlist);
20863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
208716621825SDmitry Karpeev }
208816621825SDmitry Karpeev 
20895d83a8b1SBarry Smith /*@
209020f4b53cSBarry Smith   DMCreateSubDM - Returns an `IS` and `DM` encapsulating a subproblem defined by the fields passed in.
209120f4b53cSBarry Smith   The fields are defined by `DMCreateFieldIS()`.
2092435a35e8SMatthew G Knepley 
2093435a35e8SMatthew G Knepley   Not collective
2094435a35e8SMatthew G Knepley 
2095435a35e8SMatthew G Knepley   Input Parameters:
2096bb7acecfSBarry Smith + dm        - The `DM` object
2097bb7acecfSBarry Smith . numFields - The number of fields to select
20982adcc780SMatthew G. Knepley - fields    - The field numbers of the selected fields
2099435a35e8SMatthew G Knepley 
2100435a35e8SMatthew G Knepley   Output Parameters:
2101b6971eaeSBarry Smith + is    - The global indices for all the degrees of freedom in the new sub `DM`, use `NULL` if not needed
2102b6971eaeSBarry Smith - subdm - The `DM` for the subproblem, use `NULL` if not needed
2103435a35e8SMatthew G Knepley 
210420f4b53cSBarry Smith   Level: intermediate
210520f4b53cSBarry Smith 
2106bb7acecfSBarry Smith   Note:
2107bb7acecfSBarry Smith   You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed
21085d3b26e6SMatthew G. Knepley 
210960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateFieldIS()`, `DMCreateFieldDecomposition()`, `DMAddField()`, `DMCreateSuperDM()`, `IS`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
2110435a35e8SMatthew G Knepley @*/
2111d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSubDM(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm)
2112d71ae5a4SJacob Faibussowitsch {
2113435a35e8SMatthew G Knepley   PetscFunctionBegin;
2114435a35e8SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
21154f572ea9SToby Isaac   PetscAssertPointer(fields, 3);
21164f572ea9SToby Isaac   if (is) PetscAssertPointer(is, 4);
21174f572ea9SToby Isaac   if (subdm) PetscAssertPointer(subdm, 5);
2118dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createsubdm, numFields, fields, is, subdm);
21193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2120435a35e8SMatthew G Knepley }
2121435a35e8SMatthew G Knepley 
21222adcc780SMatthew G. Knepley /*@C
2123bb7acecfSBarry Smith   DMCreateSuperDM - Returns an arrays of `IS` and `DM` encapsulating a superproblem defined by multiple `DM`s passed in.
21242adcc780SMatthew G. Knepley 
21252adcc780SMatthew G. Knepley   Not collective
21262adcc780SMatthew G. Knepley 
2127d8d19677SJose E. Roman   Input Parameters:
2128bb7acecfSBarry Smith + dms - The `DM` objects
2129bb7acecfSBarry Smith - n   - The number of `DM`s
21302adcc780SMatthew G. Knepley 
21312adcc780SMatthew G. Knepley   Output Parameters:
2132bb7acecfSBarry Smith + is      - The global indices for each of subproblem within the super `DM`, or NULL
2133bb7acecfSBarry Smith - superdm - The `DM` for the superproblem
21342adcc780SMatthew G. Knepley 
213520f4b53cSBarry Smith   Level: intermediate
213620f4b53cSBarry Smith 
2137bb7acecfSBarry Smith   Note:
2138bb7acecfSBarry Smith   You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed
21395d3b26e6SMatthew G. Knepley 
214073ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateSubDM()`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`, `DMCreateDomainDecomposition()`
21412adcc780SMatthew G. Knepley @*/
21425d83a8b1SBarry Smith PetscErrorCode DMCreateSuperDM(DM dms[], PetscInt n, IS *is[], DM *superdm)
2143d71ae5a4SJacob Faibussowitsch {
21442adcc780SMatthew G. Knepley   PetscInt i;
21452adcc780SMatthew G. Knepley 
21462adcc780SMatthew G. Knepley   PetscFunctionBegin;
21474f572ea9SToby Isaac   PetscAssertPointer(dms, 1);
2148ad540459SPierre Jolivet   for (i = 0; i < n; ++i) PetscValidHeaderSpecific(dms[i], DM_CLASSID, 1);
21494f572ea9SToby Isaac   if (is) PetscAssertPointer(is, 3);
21504f572ea9SToby Isaac   PetscAssertPointer(superdm, 4);
2151bb7acecfSBarry Smith   PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of DMs must be nonnegative: %" PetscInt_FMT, n);
2152bb7acecfSBarry Smith   if (n) {
2153b9d85ea2SLisandro Dalcin     DM dm = dms[0];
215400045ab3SPierre Jolivet     PetscCheck(dm->ops->createsuperdm, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No method createsuperdm for DM of type %s", ((PetscObject)dm)->type_name);
2155dbbe0bcdSBarry Smith     PetscCall((*dm->ops->createsuperdm)(dms, n, is, superdm));
21562adcc780SMatthew G. Knepley   }
21573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21582adcc780SMatthew G. Knepley }
21592adcc780SMatthew G. Knepley 
216016621825SDmitry Karpeev /*@C
2161a4e35b19SJacob Faibussowitsch   DMCreateDomainDecomposition - Returns lists of `IS` objects defining a decomposition of a
2162a4e35b19SJacob Faibussowitsch   problem into subproblems corresponding to restrictions to pairs of nested subdomains.
216316621825SDmitry Karpeev 
216420f4b53cSBarry Smith   Not Collective
216516621825SDmitry Karpeev 
216616621825SDmitry Karpeev   Input Parameter:
2167bb7acecfSBarry Smith . dm - the `DM` object
216816621825SDmitry Karpeev 
216916621825SDmitry Karpeev   Output Parameters:
217020f4b53cSBarry Smith + n           - The number of subproblems in the domain decomposition (or `NULL` if not requested)
217120f4b53cSBarry Smith . namelist    - The name for each subdomain (or `NULL` if not requested)
217273ff1848SBarry Smith . innerislist - The global indices for each inner subdomain (or `NULL`, if not requested)
217373ff1848SBarry Smith . outerislist - The global indices for each outer subdomain (or `NULL`, if not requested)
217473ff1848SBarry Smith - dmlist      - The `DM`s for each subdomain subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined)
217516621825SDmitry Karpeev 
217616621825SDmitry Karpeev   Level: intermediate
217716621825SDmitry Karpeev 
217873ff1848SBarry Smith   Notes:
2179a4e35b19SJacob Faibussowitsch   Each `IS` contains the global indices of the dofs of the corresponding subdomains with in the
2180a4e35b19SJacob Faibussowitsch   dofs of the original `DM`. The inner subdomains conceptually define a nonoverlapping
2181a4e35b19SJacob Faibussowitsch   covering, while outer subdomains can overlap.
2182a4e35b19SJacob Faibussowitsch 
2183a4e35b19SJacob Faibussowitsch   The optional list of `DM`s define a `DM` for each subproblem.
2184a4e35b19SJacob Faibussowitsch 
218573ff1848SBarry Smith   The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with
218673ff1848SBarry Smith   `PetscFree()`, every entry of `innerislist` and `outerislist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`,
2187bb7acecfSBarry Smith   and all of the arrays should be freed with `PetscFree()`.
218816621825SDmitry Karpeev 
2189a4e35b19SJacob Faibussowitsch   Developer Notes:
219020f4b53cSBarry Smith   The `dmlist` is for the inner subdomains or the outer subdomains or all subdomains?
2191bb7acecfSBarry Smith 
219273ff1848SBarry Smith   The names are inconsistent, the hooks use `DMSubDomainHook` which is nothing like `DMCreateDomainDecomposition()` while `DMRefineHook` is used for `DMRefine()`.
219373ff1848SBarry Smith 
219473ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateFieldDecomposition()`, `DMDestroy()`, `DMCreateDomainDecompositionScatters()`, `DMView()`, `DMCreateInterpolation()`,
219573ff1848SBarry Smith           `DMSubDomainHookAdd()`, `DMSubDomainHookRemove()`,`DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`
219616621825SDmitry Karpeev @*/
2197d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecomposition(DM dm, PetscInt *n, char ***namelist, IS **innerislist, IS **outerislist, DM **dmlist)
2198d71ae5a4SJacob Faibussowitsch {
2199be081cd6SPeter Brune   DMSubDomainHookLink link;
2200be081cd6SPeter Brune   PetscInt            i, l;
220116621825SDmitry Karpeev 
220216621825SDmitry Karpeev   PetscFunctionBegin;
220316621825SDmitry Karpeev   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
22049371c9d4SSatish Balay   if (n) {
22054f572ea9SToby Isaac     PetscAssertPointer(n, 2);
22069371c9d4SSatish Balay     *n = 0;
22079371c9d4SSatish Balay   }
22089371c9d4SSatish Balay   if (namelist) {
22094f572ea9SToby Isaac     PetscAssertPointer(namelist, 3);
22109371c9d4SSatish Balay     *namelist = NULL;
22119371c9d4SSatish Balay   }
22129371c9d4SSatish Balay   if (innerislist) {
22134f572ea9SToby Isaac     PetscAssertPointer(innerislist, 4);
22149371c9d4SSatish Balay     *innerislist = NULL;
22159371c9d4SSatish Balay   }
22169371c9d4SSatish Balay   if (outerislist) {
22174f572ea9SToby Isaac     PetscAssertPointer(outerislist, 5);
22189371c9d4SSatish Balay     *outerislist = NULL;
22199371c9d4SSatish Balay   }
22209371c9d4SSatish Balay   if (dmlist) {
22214f572ea9SToby Isaac     PetscAssertPointer(dmlist, 6);
22229371c9d4SSatish Balay     *dmlist = NULL;
22239371c9d4SSatish Balay   }
2224f3f0edfdSDmitry Karpeev   /*
2225f3f0edfdSDmitry Karpeev    Is it a good idea to apply the following check across all impls?
2226f3f0edfdSDmitry Karpeev    Perhaps some impls can have a well-defined decomposition before DMSetUp?
2227f3f0edfdSDmitry Karpeev    This, however, follows the general principle that accessors are not well-behaved until the object is set up.
2228f3f0edfdSDmitry Karpeev    */
22297a8be351SBarry Smith   PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp");
223016621825SDmitry Karpeev   if (dm->ops->createdomaindecomposition) {
2231dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm, createdomaindecomposition, &l, namelist, innerislist, outerislist, dmlist);
223214a18fd3SPeter Brune     /* copy subdomain hooks and context over to the subdomain DMs */
2233f891f5b9SPatrick Sanan     if (dmlist && *dmlist) {
2234be081cd6SPeter Brune       for (i = 0; i < l; i++) {
2235be081cd6SPeter Brune         for (link = dm->subdomainhook; link; link = link->next) {
22369566063dSJacob Faibussowitsch           if (link->ddhook) PetscCall((*link->ddhook)(dm, (*dmlist)[i], link->ctx));
2237be081cd6SPeter Brune         }
2238648262bbSPatrick Sanan         if (dm->ctx) (*dmlist)[i]->ctx = dm->ctx;
2239e7c4fc90SDmitry Karpeev       }
224014a18fd3SPeter Brune     }
2241bb7acecfSBarry Smith     if (n) *n = l;
224214a18fd3SPeter Brune   }
22433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2244e30e807fSPeter Brune }
2245e30e807fSPeter Brune 
2246e30e807fSPeter Brune /*@C
224773ff1848SBarry Smith   DMCreateDomainDecompositionScatters - Returns scatters to the subdomain vectors from the global vector for subdomains created with
224873ff1848SBarry Smith   `DMCreateDomainDecomposition()`
2249e30e807fSPeter Brune 
225020f4b53cSBarry Smith   Not Collective
2251e30e807fSPeter Brune 
2252e30e807fSPeter Brune   Input Parameters:
2253bb7acecfSBarry Smith + dm     - the `DM` object
225473ff1848SBarry Smith . n      - the number of subdomains
2255e30e807fSPeter Brune - subdms - the local subdomains
2256e30e807fSPeter Brune 
2257e30e807fSPeter Brune   Output Parameters:
22586b867d5aSJose E. Roman + iscat - scatter from global vector to nonoverlapping global vector entries on subdomain
2259e30e807fSPeter Brune . oscat - scatter from global vector to overlapping global vector entries on subdomain
2260e30e807fSPeter Brune - gscat - scatter from global vector to local vector on subdomain (fills in ghosts)
2261e30e807fSPeter Brune 
226220f4b53cSBarry Smith   Level: developer
226320f4b53cSBarry Smith 
2264bb7acecfSBarry Smith   Note:
2265bb7acecfSBarry Smith   This is an alternative to the iis and ois arguments in `DMCreateDomainDecomposition()` that allow for the solution
2266e30e807fSPeter Brune   of general nonlinear problems with overlapping subdomain methods.  While merely having index sets that enable subsets
2267e30e807fSPeter Brune   of the residual equations to be created is fine for linear problems, nonlinear problems require local assembly of
2268e30e807fSPeter Brune   solution and residual data.
2269e30e807fSPeter Brune 
227073ff1848SBarry Smith   Developer Note:
2271a4e35b19SJacob Faibussowitsch   Can the subdms input be anything or are they exactly the `DM` obtained from
2272a4e35b19SJacob Faibussowitsch   `DMCreateDomainDecomposition()`?
2273bb7acecfSBarry Smith 
22741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`
2275e30e807fSPeter Brune @*/
22765d83a8b1SBarry Smith PetscErrorCode DMCreateDomainDecompositionScatters(DM dm, PetscInt n, DM *subdms, VecScatter *iscat[], VecScatter *oscat[], VecScatter *gscat[])
2277d71ae5a4SJacob Faibussowitsch {
2278e30e807fSPeter Brune   PetscFunctionBegin;
2279e30e807fSPeter Brune   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
22804f572ea9SToby Isaac   PetscAssertPointer(subdms, 3);
2281dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createddscatters, n, subdms, iscat, oscat, gscat);
22823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2283e7c4fc90SDmitry Karpeev }
2284e7c4fc90SDmitry Karpeev 
228547c6ae99SBarry Smith /*@
2286bb7acecfSBarry Smith   DMRefine - Refines a `DM` object using a standard nonadaptive refinement of the underlying mesh
228747c6ae99SBarry Smith 
228820f4b53cSBarry Smith   Collective
228947c6ae99SBarry Smith 
2290d8d19677SJose E. Roman   Input Parameters:
2291bb7acecfSBarry Smith + dm   - the `DM` object
2292bb7acecfSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`)
229347c6ae99SBarry Smith 
229447c6ae99SBarry Smith   Output Parameter:
229520f4b53cSBarry Smith . dmf - the refined `DM`, or `NULL`
2296ae0a1c52SMatthew G Knepley 
229720f4b53cSBarry Smith   Options Database Key:
2298412e9a14SMatthew G. Knepley . -dm_plex_cell_refiner <strategy> - chooses the refinement strategy, e.g. regular, tohex
2299412e9a14SMatthew G. Knepley 
230047c6ae99SBarry Smith   Level: developer
230147c6ae99SBarry Smith 
230220f4b53cSBarry Smith   Note:
230320f4b53cSBarry Smith   If no refinement was done, the return value is `NULL`
230420f4b53cSBarry Smith 
230573ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`,
230673ff1848SBarry Smith           `DMRefineHookAdd()`, `DMRefineHookRemove()`
230747c6ae99SBarry Smith @*/
2308d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefine(DM dm, MPI_Comm comm, DM *dmf)
2309d71ae5a4SJacob Faibussowitsch {
2310c833c3b5SJed Brown   DMRefineHookLink link;
231147c6ae99SBarry Smith 
231247c6ae99SBarry Smith   PetscFunctionBegin;
2313732e2eb9SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
23149566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_Refine, dm, 0, 0, 0));
2315dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, refine, comm, dmf);
23164057135bSMatthew G Knepley   if (*dmf) {
231743842a1eSJed Brown     (*dmf)->ops->creatematrix = dm->ops->creatematrix;
23188865f1eaSKarl Rupp 
23199566063dSJacob Faibussowitsch     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmf));
23208865f1eaSKarl Rupp 
2321644e2e5bSBarry Smith     (*dmf)->ctx       = dm->ctx;
23220598a293SJed Brown     (*dmf)->leveldown = dm->leveldown;
2323656b349aSBarry Smith     (*dmf)->levelup   = dm->levelup + 1;
23248865f1eaSKarl Rupp 
23259566063dSJacob Faibussowitsch     PetscCall(DMSetMatType(*dmf, dm->mattype));
2326c833c3b5SJed Brown     for (link = dm->refinehook; link; link = link->next) {
23271baa6e33SBarry Smith       if (link->refinehook) PetscCall((*link->refinehook)(dm, *dmf, link->ctx));
2328c833c3b5SJed Brown     }
2329c833c3b5SJed Brown   }
23309566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_Refine, dm, 0, 0, 0));
23313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2332c833c3b5SJed Brown }
2333c833c3b5SJed Brown 
2334bb9467b5SJed Brown /*@C
2335c833c3b5SJed Brown   DMRefineHookAdd - adds a callback to be run when interpolating a nonlinear problem to a finer grid
2336c833c3b5SJed Brown 
233720f4b53cSBarry Smith   Logically Collective; No Fortran Support
2338c833c3b5SJed Brown 
23394165533cSJose E. Roman   Input Parameters:
2340bb7acecfSBarry Smith + coarse     - `DM` on which to run a hook when interpolating to a finer level
2341bb7acecfSBarry Smith . refinehook - function to run when setting up the finer level
2342f826b5fcSPierre Jolivet . interphook - function to run to update data on finer levels (once per `SNESSolve()`)
234320f4b53cSBarry Smith - ctx        - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2344c833c3b5SJed Brown 
234520f4b53cSBarry Smith   Calling sequence of `refinehook`:
2346bb7acecfSBarry Smith + coarse - coarse level `DM`
2347bb7acecfSBarry Smith . fine   - fine level `DM` to interpolate problem to
2348c833c3b5SJed Brown - ctx    - optional user-defined function context
2349c833c3b5SJed Brown 
235020f4b53cSBarry Smith   Calling sequence of `interphook`:
2351bb7acecfSBarry Smith + coarse - coarse level `DM`
2352c833c3b5SJed Brown . interp - matrix interpolating a coarse-level solution to the finer grid
2353bb7acecfSBarry Smith . fine   - fine level `DM` to update
2354c833c3b5SJed Brown - ctx    - optional user-defined function context
2355c833c3b5SJed Brown 
2356c833c3b5SJed Brown   Level: advanced
2357c833c3b5SJed Brown 
2358c833c3b5SJed Brown   Notes:
2359bb7acecfSBarry Smith   This function is only needed if auxiliary data that is attached to the `DM`s via, for example, `PetscObjectCompose()`, needs to be
2360bb7acecfSBarry Smith   passed to fine grids while grid sequencing.
2361bb7acecfSBarry Smith 
2362bb7acecfSBarry Smith   The actual interpolation is done when `DMInterpolate()` is called.
2363c833c3b5SJed Brown 
2364c833c3b5SJed Brown   If this function is called multiple times, the hooks will be run in the order they are added.
2365c833c3b5SJed Brown 
23661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2367c833c3b5SJed Brown @*/
2368a4e35b19SJacob Faibussowitsch PetscErrorCode DMRefineHookAdd(DM coarse, PetscErrorCode (*refinehook)(DM coarse, DM fine, void *ctx), PetscErrorCode (*interphook)(DM coarse, Mat interp, DM fine, void *ctx), void *ctx)
2369d71ae5a4SJacob Faibussowitsch {
2370c833c3b5SJed Brown   DMRefineHookLink link, *p;
2371c833c3b5SJed Brown 
2372c833c3b5SJed Brown   PetscFunctionBegin;
2373c833c3b5SJed Brown   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
23743d8e3701SJed Brown   for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
23753ba16761SJacob Faibussowitsch     if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
23763d8e3701SJed Brown   }
23779566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
2378c833c3b5SJed Brown   link->refinehook = refinehook;
2379c833c3b5SJed Brown   link->interphook = interphook;
2380c833c3b5SJed Brown   link->ctx        = ctx;
23810298fd71SBarry Smith   link->next       = NULL;
2382c833c3b5SJed Brown   *p               = link;
23833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2384c833c3b5SJed Brown }
2385c833c3b5SJed Brown 
23863d8e3701SJed Brown /*@C
2387bb7acecfSBarry Smith   DMRefineHookRemove - remove a callback from the list of hooks, that have been set with `DMRefineHookAdd()`, to be run when interpolating
2388bb7acecfSBarry Smith   a nonlinear problem to a finer grid
23893d8e3701SJed Brown 
239020f4b53cSBarry Smith   Logically Collective; No Fortran Support
23913d8e3701SJed Brown 
23924165533cSJose E. Roman   Input Parameters:
2393bb7acecfSBarry Smith + coarse     - the `DM` on which to run a hook when restricting to a coarser level
2394bb7acecfSBarry Smith . refinehook - function to run when setting up a finer level
2395bb7acecfSBarry Smith . interphook - function to run to update data on finer levels
239620f4b53cSBarry Smith - ctx        - [optional] user-defined context for provide data for the hooks (may be `NULL`)
23973d8e3701SJed Brown 
23983d8e3701SJed Brown   Level: advanced
23993d8e3701SJed Brown 
2400bb7acecfSBarry Smith   Note:
24013d8e3701SJed Brown   This function does nothing if the hook is not in the list.
24023d8e3701SJed Brown 
24031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `DMCoarsenHookRemove()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
24043d8e3701SJed Brown @*/
2405d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookRemove(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx)
2406d71ae5a4SJacob Faibussowitsch {
24073d8e3701SJed Brown   DMRefineHookLink link, *p;
24083d8e3701SJed Brown 
24093d8e3701SJed Brown   PetscFunctionBegin;
24103d8e3701SJed Brown   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
24113d8e3701SJed Brown   for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Search the list of current hooks */
24123d8e3701SJed Brown     if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) {
24133d8e3701SJed Brown       link = *p;
24143d8e3701SJed Brown       *p   = link->next;
24159566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
24163d8e3701SJed Brown       break;
24173d8e3701SJed Brown     }
24183d8e3701SJed Brown   }
24193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24203d8e3701SJed Brown }
24213d8e3701SJed Brown 
2422c833c3b5SJed Brown /*@
2423bb7acecfSBarry Smith   DMInterpolate - interpolates user-defined problem data attached to a `DM` to a finer `DM` by running hooks registered by `DMRefineHookAdd()`
2424c833c3b5SJed Brown 
2425c833c3b5SJed Brown   Collective if any hooks are
2426c833c3b5SJed Brown 
24274165533cSJose E. Roman   Input Parameters:
2428bb7acecfSBarry Smith + coarse - coarser `DM` to use as a base
2429bb7acecfSBarry Smith . interp - interpolation matrix, apply using `MatInterpolate()`
2430bb7acecfSBarry Smith - fine   - finer `DM` to update
2431c833c3b5SJed Brown 
2432c833c3b5SJed Brown   Level: developer
2433c833c3b5SJed Brown 
243473ff1848SBarry Smith   Developer Note:
2435bb7acecfSBarry Smith   This routine is called `DMInterpolate()` while the hook is called `DMRefineHookAdd()`. It would be better to have an
2436bb7acecfSBarry Smith   an API with consistent terminology.
2437bb7acecfSBarry Smith 
24381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `MatInterpolate()`
2439c833c3b5SJed Brown @*/
2440d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolate(DM coarse, Mat interp, DM fine)
2441d71ae5a4SJacob Faibussowitsch {
2442c833c3b5SJed Brown   DMRefineHookLink link;
2443c833c3b5SJed Brown 
2444c833c3b5SJed Brown   PetscFunctionBegin;
2445c833c3b5SJed Brown   for (link = fine->refinehook; link; link = link->next) {
24461baa6e33SBarry Smith     if (link->interphook) PetscCall((*link->interphook)(coarse, interp, fine, link->ctx));
24474057135bSMatthew G Knepley   }
24483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
244947c6ae99SBarry Smith }
245047c6ae99SBarry Smith 
2451eb3f98d2SBarry Smith /*@
24521f3379b2SToby Isaac   DMInterpolateSolution - Interpolates a solution from a coarse mesh to a fine mesh.
24531f3379b2SToby Isaac 
245420f4b53cSBarry Smith   Collective
24551f3379b2SToby Isaac 
24564165533cSJose E. Roman   Input Parameters:
2457bb7acecfSBarry Smith + coarse    - coarse `DM`
2458bb7acecfSBarry Smith . fine      - fine `DM`
2459bb7acecfSBarry Smith . interp    - (optional) the matrix computed by `DMCreateInterpolation()`.  Implementations may not need this, but if it
2460bb7acecfSBarry Smith             is available it can avoid some recomputation.  If it is provided, `MatInterpolate()` will be used if
2461bb7acecfSBarry Smith             the coarse `DM` does not have a specialized implementation.
24621f3379b2SToby Isaac - coarseSol - solution on the coarse mesh
24631f3379b2SToby Isaac 
24644165533cSJose E. Roman   Output Parameter:
24651f3379b2SToby Isaac . fineSol - the interpolation of coarseSol to the fine mesh
24661f3379b2SToby Isaac 
24671f3379b2SToby Isaac   Level: developer
24681f3379b2SToby Isaac 
2469bb7acecfSBarry Smith   Note:
2470bb7acecfSBarry Smith   This function exists because the interpolation of a solution vector between meshes is not always a linear
24711f3379b2SToby Isaac   map.  For example, if a boundary value problem has an inhomogeneous Dirichlet boundary condition that is compressed
24721f3379b2SToby Isaac   out of the solution vector.  Or if interpolation is inherently a nonlinear operation, such as a method using
24731f3379b2SToby Isaac   slope-limiting reconstruction.
24741f3379b2SToby Isaac 
247573ff1848SBarry Smith   Developer Note:
2476bb7acecfSBarry Smith   This doesn't just interpolate "solutions" so its API name is questionable.
2477bb7acecfSBarry Smith 
24781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMInterpolate()`, `DMCreateInterpolation()`
24791f3379b2SToby Isaac @*/
2480d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolateSolution(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol)
2481d71ae5a4SJacob Faibussowitsch {
24821f3379b2SToby Isaac   PetscErrorCode (*interpsol)(DM, DM, Mat, Vec, Vec) = NULL;
24831f3379b2SToby Isaac 
24841f3379b2SToby Isaac   PetscFunctionBegin;
24851f3379b2SToby Isaac   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
24861f3379b2SToby Isaac   if (interp) PetscValidHeaderSpecific(interp, MAT_CLASSID, 3);
24871f3379b2SToby Isaac   PetscValidHeaderSpecific(coarseSol, VEC_CLASSID, 4);
24881f3379b2SToby Isaac   PetscValidHeaderSpecific(fineSol, VEC_CLASSID, 5);
24891f3379b2SToby Isaac 
24909566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)coarse, "DMInterpolateSolution_C", &interpsol));
24911f3379b2SToby Isaac   if (interpsol) {
24929566063dSJacob Faibussowitsch     PetscCall((*interpsol)(coarse, fine, interp, coarseSol, fineSol));
24931f3379b2SToby Isaac   } else if (interp) {
24949566063dSJacob Faibussowitsch     PetscCall(MatInterpolate(interp, coarseSol, fineSol));
249598921bdaSJacob Faibussowitsch   } else SETERRQ(PetscObjectComm((PetscObject)coarse), PETSC_ERR_SUP, "DM %s does not implement DMInterpolateSolution()", ((PetscObject)coarse)->type_name);
24963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24971f3379b2SToby Isaac }
24981f3379b2SToby Isaac 
24991f3379b2SToby Isaac /*@
2500bb7acecfSBarry Smith   DMGetRefineLevel - Gets the number of refinements that have generated this `DM` from some initial `DM`.
2501eb3f98d2SBarry Smith 
2502eb3f98d2SBarry Smith   Not Collective
2503eb3f98d2SBarry Smith 
2504eb3f98d2SBarry Smith   Input Parameter:
2505bb7acecfSBarry Smith . dm - the `DM` object
2506eb3f98d2SBarry Smith 
2507eb3f98d2SBarry Smith   Output Parameter:
2508eb3f98d2SBarry Smith . level - number of refinements
2509eb3f98d2SBarry Smith 
2510eb3f98d2SBarry Smith   Level: developer
2511eb3f98d2SBarry Smith 
2512bb7acecfSBarry Smith   Note:
2513bb7acecfSBarry Smith   This can be used, by example, to set the number of coarser levels associated with this `DM` for a multigrid solver.
2514bb7acecfSBarry Smith 
25151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
2516eb3f98d2SBarry Smith @*/
2517d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRefineLevel(DM dm, PetscInt *level)
2518d71ae5a4SJacob Faibussowitsch {
2519eb3f98d2SBarry Smith   PetscFunctionBegin;
2520eb3f98d2SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2521eb3f98d2SBarry Smith   *level = dm->levelup;
25223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2523eb3f98d2SBarry Smith }
2524eb3f98d2SBarry Smith 
2525fef3a512SBarry Smith /*@
2526bb7acecfSBarry Smith   DMSetRefineLevel - Sets the number of refinements that have generated this `DM`.
2527fef3a512SBarry Smith 
2528fef3a512SBarry Smith   Not Collective
2529fef3a512SBarry Smith 
2530d8d19677SJose E. Roman   Input Parameters:
2531bb7acecfSBarry Smith + dm    - the `DM` object
2532fef3a512SBarry Smith - level - number of refinements
2533fef3a512SBarry Smith 
2534fef3a512SBarry Smith   Level: advanced
2535fef3a512SBarry Smith 
253695452b02SPatrick Sanan   Notes:
2537bb7acecfSBarry Smith   This value is used by `PCMG` to determine how many multigrid levels to use
2538fef3a512SBarry Smith 
2539bb7acecfSBarry Smith   The values are usually set automatically by the process that is causing the refinements of an initial `DM` by calling this routine.
2540bb7acecfSBarry Smith 
25411cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRefineLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
2542fef3a512SBarry Smith @*/
2543d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRefineLevel(DM dm, PetscInt level)
2544d71ae5a4SJacob Faibussowitsch {
2545fef3a512SBarry Smith   PetscFunctionBegin;
2546fef3a512SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2547fef3a512SBarry Smith   dm->levelup = level;
25483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2549fef3a512SBarry Smith }
2550fef3a512SBarry Smith 
2551d410b0cfSMatthew G. Knepley /*@
2552bb7acecfSBarry Smith   DMExtrude - Extrude a `DM` object from a surface
2553d410b0cfSMatthew G. Knepley 
255420f4b53cSBarry Smith   Collective
2555d410b0cfSMatthew G. Knepley 
2556f1a722f8SMatthew G. Knepley   Input Parameters:
2557bb7acecfSBarry Smith + dm     - the `DM` object
2558d410b0cfSMatthew G. Knepley - layers - the number of extruded cell layers
2559d410b0cfSMatthew G. Knepley 
2560d410b0cfSMatthew G. Knepley   Output Parameter:
256120f4b53cSBarry Smith . dme - the extruded `DM`, or `NULL`
2562d410b0cfSMatthew G. Knepley 
2563d410b0cfSMatthew G. Knepley   Level: developer
2564d410b0cfSMatthew G. Knepley 
256520f4b53cSBarry Smith   Note:
256620f4b53cSBarry Smith   If no extrusion was done, the return value is `NULL`
256720f4b53cSBarry Smith 
25681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`
2569d410b0cfSMatthew G. Knepley @*/
2570d71ae5a4SJacob Faibussowitsch PetscErrorCode DMExtrude(DM dm, PetscInt layers, DM *dme)
2571d71ae5a4SJacob Faibussowitsch {
2572d410b0cfSMatthew G. Knepley   PetscFunctionBegin;
2573d410b0cfSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2574dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, extrude, layers, dme);
2575d410b0cfSMatthew G. Knepley   if (*dme) {
2576d410b0cfSMatthew G. Knepley     (*dme)->ops->creatematrix = dm->ops->creatematrix;
25779566063dSJacob Faibussowitsch     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dme));
2578d410b0cfSMatthew G. Knepley     (*dme)->ctx = dm->ctx;
25799566063dSJacob Faibussowitsch     PetscCall(DMSetMatType(*dme, dm->mattype));
2580d410b0cfSMatthew G. Knepley   }
25813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2582d410b0cfSMatthew G. Knepley }
2583d410b0cfSMatthew G. Knepley 
2584d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformDM_Internal(DM dm, DM *tdm)
2585d71ae5a4SJacob Faibussowitsch {
2586ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2587ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
25884f572ea9SToby Isaac   PetscAssertPointer(tdm, 2);
2589ca3d3a14SMatthew G. Knepley   *tdm = dm->transformDM;
25903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2591ca3d3a14SMatthew G. Knepley }
2592ca3d3a14SMatthew G. Knepley 
2593d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformVec_Internal(DM dm, Vec *tv)
2594d71ae5a4SJacob Faibussowitsch {
2595ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2596ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
25974f572ea9SToby Isaac   PetscAssertPointer(tv, 2);
2598ca3d3a14SMatthew G. Knepley   *tv = dm->transform;
25993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2600ca3d3a14SMatthew G. Knepley }
2601ca3d3a14SMatthew G. Knepley 
2602ca3d3a14SMatthew G. Knepley /*@
2603bb7acecfSBarry Smith   DMHasBasisTransform - Whether the `DM` employs a basis transformation from functions in global vectors to functions in local vectors
2604ca3d3a14SMatthew G. Knepley 
2605ca3d3a14SMatthew G. Knepley   Input Parameter:
260620f4b53cSBarry Smith . dm - The `DM`
2607ca3d3a14SMatthew G. Knepley 
2608ca3d3a14SMatthew G. Knepley   Output Parameter:
260920f4b53cSBarry Smith . flg - `PETSC_TRUE` if a basis transformation should be done
2610ca3d3a14SMatthew G. Knepley 
2611ca3d3a14SMatthew G. Knepley   Level: developer
2612ca3d3a14SMatthew G. Knepley 
26131cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`, `DMPlexCreateBasisRotation()`
2614ca3d3a14SMatthew G. Knepley @*/
2615d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasBasisTransform(DM dm, PetscBool *flg)
2616d71ae5a4SJacob Faibussowitsch {
2617ca3d3a14SMatthew G. Knepley   Vec tv;
2618ca3d3a14SMatthew G. Knepley 
2619ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2620ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
26214f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
26229566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
2623ca3d3a14SMatthew G. Knepley   *flg = tv ? PETSC_TRUE : PETSC_FALSE;
26243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2625ca3d3a14SMatthew G. Knepley }
2626ca3d3a14SMatthew G. Knepley 
2627d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConstructBasisTransform_Internal(DM dm)
2628d71ae5a4SJacob Faibussowitsch {
2629ca3d3a14SMatthew G. Knepley   PetscSection s, ts;
2630ca3d3a14SMatthew G. Knepley   PetscScalar *ta;
2631ca3d3a14SMatthew G. Knepley   PetscInt     cdim, pStart, pEnd, p, Nf, f, Nc, dof;
2632ca3d3a14SMatthew G. Knepley 
2633ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
26349566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
26359566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
26369566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
26379566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
26389566063dSJacob Faibussowitsch   PetscCall(DMClone(dm, &dm->transformDM));
26399566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm->transformDM, &ts));
26409566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetNumFields(ts, Nf));
26419566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(ts, pStart, pEnd));
2642ca3d3a14SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
26439566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetFieldComponents(s, f, &Nc));
2644ca3d3a14SMatthew G. Knepley     /* We could start to label fields by their transformation properties */
2645ca3d3a14SMatthew G. Knepley     if (Nc != cdim) continue;
2646ca3d3a14SMatthew G. Knepley     for (p = pStart; p < pEnd; ++p) {
26479566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(s, p, f, &dof));
2648ca3d3a14SMatthew G. Knepley       if (!dof) continue;
26499566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetFieldDof(ts, p, f, PetscSqr(cdim)));
26509566063dSJacob Faibussowitsch       PetscCall(PetscSectionAddDof(ts, p, PetscSqr(cdim)));
2651ca3d3a14SMatthew G. Knepley     }
2652ca3d3a14SMatthew G. Knepley   }
26539566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(ts));
26549566063dSJacob Faibussowitsch   PetscCall(DMCreateLocalVector(dm->transformDM, &dm->transform));
26559566063dSJacob Faibussowitsch   PetscCall(VecGetArray(dm->transform, &ta));
2656ca3d3a14SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
2657ca3d3a14SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
26589566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof));
2659ca3d3a14SMatthew G. Knepley       if (dof) {
2660ca3d3a14SMatthew G. Knepley         PetscReal          x[3] = {0.0, 0.0, 0.0};
2661ca3d3a14SMatthew G. Knepley         PetscScalar       *tva;
2662ca3d3a14SMatthew G. Knepley         const PetscScalar *A;
2663ca3d3a14SMatthew G. Knepley 
2664ca3d3a14SMatthew G. Knepley         /* TODO Get quadrature point for this dual basis vector for coordinate */
26659566063dSJacob Faibussowitsch         PetscCall((*dm->transformGetMatrix)(dm, x, PETSC_TRUE, &A, dm->transformCtx));
26669566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRef(dm->transformDM, p, f, ta, (void *)&tva));
26679566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(tva, A, PetscSqr(cdim)));
2668ca3d3a14SMatthew G. Knepley       }
2669ca3d3a14SMatthew G. Knepley     }
2670ca3d3a14SMatthew G. Knepley   }
26719566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(dm->transform, &ta));
26723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2673ca3d3a14SMatthew G. Knepley }
2674ca3d3a14SMatthew G. Knepley 
2675d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyTransform(DM dm, DM newdm)
2676d71ae5a4SJacob Faibussowitsch {
2677ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2678ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2679ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(newdm, DM_CLASSID, 2);
2680ca3d3a14SMatthew G. Knepley   newdm->transformCtx       = dm->transformCtx;
2681ca3d3a14SMatthew G. Knepley   newdm->transformSetUp     = dm->transformSetUp;
2682ca3d3a14SMatthew G. Knepley   newdm->transformDestroy   = NULL;
2683ca3d3a14SMatthew G. Knepley   newdm->transformGetMatrix = dm->transformGetMatrix;
26849566063dSJacob Faibussowitsch   if (newdm->transformSetUp) PetscCall(DMConstructBasisTransform_Internal(newdm));
26853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2686ca3d3a14SMatthew G. Knepley }
2687ca3d3a14SMatthew G. Knepley 
2688bb9467b5SJed Brown /*@C
2689bb7acecfSBarry Smith   DMGlobalToLocalHookAdd - adds a callback to be run when `DMGlobalToLocal()` is called
2690baf369e7SPeter Brune 
269120f4b53cSBarry Smith   Logically Collective
2692baf369e7SPeter Brune 
26934165533cSJose E. Roman   Input Parameters:
2694bb7acecfSBarry Smith + dm        - the `DM`
2695bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMGlobalToLocalBegin()`
2696bb7acecfSBarry Smith . endhook   - function to run after `DMGlobalToLocalEnd()` has completed
269720f4b53cSBarry Smith - ctx       - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2698baf369e7SPeter Brune 
269920f4b53cSBarry Smith   Calling sequence of `beginhook`:
2700a4e35b19SJacob Faibussowitsch + dm   - global `DM`
2701baf369e7SPeter Brune . g    - global vector
2702baf369e7SPeter Brune . mode - mode
2703baf369e7SPeter Brune . l    - local vector
2704baf369e7SPeter Brune - ctx  - optional user-defined function context
2705baf369e7SPeter Brune 
270620f4b53cSBarry Smith   Calling sequence of `endhook`:
2707a4e35b19SJacob Faibussowitsch + dm   - global `DM`
2708a4e35b19SJacob Faibussowitsch . g    - global vector
2709a4e35b19SJacob Faibussowitsch . mode - mode
2710a4e35b19SJacob Faibussowitsch . l    - local vector
2711baf369e7SPeter Brune - ctx  - optional user-defined function context
2712baf369e7SPeter Brune 
2713baf369e7SPeter Brune   Level: advanced
2714baf369e7SPeter Brune 
2715bb7acecfSBarry Smith   Note:
2716bb7acecfSBarry Smith   The hook may be used to provide, for example, values that represent boundary conditions in the local vectors that do not exist on the global vector.
2717bb7acecfSBarry Smith 
27181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocal()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2719baf369e7SPeter Brune @*/
2720a4e35b19SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), PetscErrorCode (*endhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), void *ctx)
2721d71ae5a4SJacob Faibussowitsch {
2722baf369e7SPeter Brune   DMGlobalToLocalHookLink link, *p;
2723baf369e7SPeter Brune 
2724baf369e7SPeter Brune   PetscFunctionBegin;
2725baf369e7SPeter Brune   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2726baf369e7SPeter Brune   for (p = &dm->gtolhook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */
27279566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
2728baf369e7SPeter Brune   link->beginhook = beginhook;
2729baf369e7SPeter Brune   link->endhook   = endhook;
2730baf369e7SPeter Brune   link->ctx       = ctx;
27310298fd71SBarry Smith   link->next      = NULL;
2732baf369e7SPeter Brune   *p              = link;
27333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2734baf369e7SPeter Brune }
2735baf369e7SPeter Brune 
2736d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGlobalToLocalHook_Constraints(DM dm, Vec g, InsertMode mode, Vec l, void *ctx)
2737d71ae5a4SJacob Faibussowitsch {
27384c274da1SToby Isaac   Mat          cMat;
273979769bd5SJed Brown   Vec          cVec, cBias;
27404c274da1SToby Isaac   PetscSection section, cSec;
27414c274da1SToby Isaac   PetscInt     pStart, pEnd, p, dof;
27424c274da1SToby Isaac 
27434c274da1SToby Isaac   PetscFunctionBegin;
2744a4e35b19SJacob Faibussowitsch   (void)g;
2745a4e35b19SJacob Faibussowitsch   (void)ctx;
27464c274da1SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
27479566063dSJacob Faibussowitsch   PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, &cBias));
27484c274da1SToby Isaac   if (cMat && (mode == INSERT_VALUES || mode == INSERT_ALL_VALUES || mode == INSERT_BC_VALUES)) {
27495db9a05bSToby Isaac     PetscInt nRows;
27505db9a05bSToby Isaac 
27519566063dSJacob Faibussowitsch     PetscCall(MatGetSize(cMat, &nRows, NULL));
27523ba16761SJacob Faibussowitsch     if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS);
27539566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
27549566063dSJacob Faibussowitsch     PetscCall(MatCreateVecs(cMat, NULL, &cVec));
27559566063dSJacob Faibussowitsch     PetscCall(MatMult(cMat, l, cVec));
27569566063dSJacob Faibussowitsch     if (cBias) PetscCall(VecAXPY(cVec, 1., cBias));
27579566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd));
27584c274da1SToby Isaac     for (p = pStart; p < pEnd; p++) {
27599566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(cSec, p, &dof));
27604c274da1SToby Isaac       if (dof) {
27614c274da1SToby Isaac         PetscScalar *vals;
27629566063dSJacob Faibussowitsch         PetscCall(VecGetValuesSection(cVec, cSec, p, &vals));
27639566063dSJacob Faibussowitsch         PetscCall(VecSetValuesSection(l, section, p, vals, INSERT_ALL_VALUES));
27644c274da1SToby Isaac       }
27654c274da1SToby Isaac     }
27669566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&cVec));
27674c274da1SToby Isaac   }
27683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27694c274da1SToby Isaac }
27704c274da1SToby Isaac 
277147c6ae99SBarry Smith /*@
277201729b5cSPatrick Sanan   DMGlobalToLocal - update local vectors from global vector
277301729b5cSPatrick Sanan 
277420f4b53cSBarry Smith   Neighbor-wise Collective
277501729b5cSPatrick Sanan 
277601729b5cSPatrick Sanan   Input Parameters:
2777bb7acecfSBarry Smith + dm   - the `DM` object
277801729b5cSPatrick Sanan . g    - the global vector
2779bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES`
278001729b5cSPatrick Sanan - l    - the local vector
278101729b5cSPatrick Sanan 
278220f4b53cSBarry Smith   Level: beginner
278320f4b53cSBarry Smith 
278401729b5cSPatrick Sanan   Notes:
2785bb7acecfSBarry Smith   The communication involved in this update can be overlapped with computation by instead using
2786bb7acecfSBarry Smith   `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()`.
2787bb7acecfSBarry Smith 
2788bb7acecfSBarry Smith   `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process.
278901729b5cSPatrick Sanan 
27901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocalHookAdd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`,
279160225df5SJacob Faibussowitsch           `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`,
2792bb7acecfSBarry Smith           `DMGlobalToLocalBegin()` `DMGlobalToLocalEnd()`
279301729b5cSPatrick Sanan @*/
2794d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocal(DM dm, Vec g, InsertMode mode, Vec l)
2795d71ae5a4SJacob Faibussowitsch {
279601729b5cSPatrick Sanan   PetscFunctionBegin;
27979566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, g, mode, l));
27989566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, g, mode, l));
27993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
280001729b5cSPatrick Sanan }
280101729b5cSPatrick Sanan 
280201729b5cSPatrick Sanan /*@
280347c6ae99SBarry Smith   DMGlobalToLocalBegin - Begins updating local vectors from global vector
280447c6ae99SBarry Smith 
280520f4b53cSBarry Smith   Neighbor-wise Collective
280647c6ae99SBarry Smith 
280747c6ae99SBarry Smith   Input Parameters:
2808bb7acecfSBarry Smith + dm   - the `DM` object
280947c6ae99SBarry Smith . g    - the global vector
2810bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES`
281147c6ae99SBarry Smith - l    - the local vector
281247c6ae99SBarry Smith 
281301729b5cSPatrick Sanan   Level: intermediate
281447c6ae99SBarry Smith 
2815bb7acecfSBarry Smith   Notes:
2816bb7acecfSBarry Smith   The operation is completed with `DMGlobalToLocalEnd()`
2817bb7acecfSBarry Smith 
2818bb7acecfSBarry Smith   One can perform local computations between the `DMGlobalToLocalBegin()` and  `DMGlobalToLocalEnd()` to overlap communication and computation
2819bb7acecfSBarry Smith 
2820bb7acecfSBarry Smith   `DMGlobalToLocal()` is a short form of  `DMGlobalToLocalBegin()` and  `DMGlobalToLocalEnd()`
2821bb7acecfSBarry Smith 
2822bb7acecfSBarry Smith   `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process.
2823bb7acecfSBarry Smith 
282460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`
282547c6ae99SBarry Smith @*/
2826d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l)
2827d71ae5a4SJacob Faibussowitsch {
28287128ae9fSMatthew G Knepley   PetscSF                 sf;
2829baf369e7SPeter Brune   DMGlobalToLocalHookLink link;
283047c6ae99SBarry Smith 
283147c6ae99SBarry Smith   PetscFunctionBegin;
2832171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2833baf369e7SPeter Brune   for (link = dm->gtolhook; link; link = link->next) {
28341baa6e33SBarry Smith     if (link->beginhook) PetscCall((*link->beginhook)(dm, g, mode, l, link->ctx));
2835baf369e7SPeter Brune   }
28369566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
28377128ae9fSMatthew G Knepley   if (sf) {
2838ae5cfb4aSMatthew G. Knepley     const PetscScalar *gArray;
2839ae5cfb4aSMatthew G. Knepley     PetscScalar       *lArray;
2840d0295fc0SJunchao Zhang     PetscMemType       lmtype, gmtype;
28417128ae9fSMatthew G Knepley 
28427a8be351SBarry Smith     PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode);
28439566063dSJacob Faibussowitsch     PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype));
28449566063dSJacob Faibussowitsch     PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype));
28459566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastWithMemTypeBegin(sf, MPIU_SCALAR, gmtype, gArray, lmtype, lArray, MPI_REPLACE));
28469566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayAndMemType(l, &lArray));
28479566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayReadAndMemType(g, &gArray));
28487128ae9fSMatthew G Knepley   } else {
2849fa1e479aSStefano Zampini     PetscUseTypeMethod(dm, globaltolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
28507128ae9fSMatthew G Knepley   }
28513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
285247c6ae99SBarry Smith }
285347c6ae99SBarry Smith 
285447c6ae99SBarry Smith /*@
285547c6ae99SBarry Smith   DMGlobalToLocalEnd - Ends updating local vectors from global vector
285647c6ae99SBarry Smith 
285720f4b53cSBarry Smith   Neighbor-wise Collective
285847c6ae99SBarry Smith 
285947c6ae99SBarry Smith   Input Parameters:
2860bb7acecfSBarry Smith + dm   - the `DM` object
286147c6ae99SBarry Smith . g    - the global vector
2862bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES`
286347c6ae99SBarry Smith - l    - the local vector
286447c6ae99SBarry Smith 
286501729b5cSPatrick Sanan   Level: intermediate
286647c6ae99SBarry Smith 
2867bb7acecfSBarry Smith   Note:
2868bb7acecfSBarry Smith   See `DMGlobalToLocalBegin()` for details.
2869bb7acecfSBarry Smith 
287060225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`
287147c6ae99SBarry Smith @*/
2872d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l)
2873d71ae5a4SJacob Faibussowitsch {
28747128ae9fSMatthew G Knepley   PetscSF                 sf;
2875ae5cfb4aSMatthew G. Knepley   const PetscScalar      *gArray;
2876ae5cfb4aSMatthew G. Knepley   PetscScalar            *lArray;
2877ca3d3a14SMatthew G. Knepley   PetscBool               transform;
2878baf369e7SPeter Brune   DMGlobalToLocalHookLink link;
2879d0295fc0SJunchao Zhang   PetscMemType            lmtype, gmtype;
288047c6ae99SBarry Smith 
288147c6ae99SBarry Smith   PetscFunctionBegin;
2882171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
28839566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
28849566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
28857128ae9fSMatthew G Knepley   if (sf) {
28867a8be351SBarry Smith     PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode);
28877128ae9fSMatthew G Knepley 
28889566063dSJacob Faibussowitsch     PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype));
28899566063dSJacob Faibussowitsch     PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype));
28909566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, gArray, lArray, MPI_REPLACE));
28919566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayAndMemType(l, &lArray));
28929566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayReadAndMemType(g, &gArray));
28939566063dSJacob Faibussowitsch     if (transform) PetscCall(DMPlexGlobalToLocalBasis(dm, l));
28947128ae9fSMatthew G Knepley   } else {
2895fa1e479aSStefano Zampini     PetscUseTypeMethod(dm, globaltolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
28967128ae9fSMatthew G Knepley   }
28979566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalHook_Constraints(dm, g, mode, l, NULL));
2898baf369e7SPeter Brune   for (link = dm->gtolhook; link; link = link->next) {
28999566063dSJacob Faibussowitsch     if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx));
2900baf369e7SPeter Brune   }
29013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
290247c6ae99SBarry Smith }
290347c6ae99SBarry Smith 
2904d4d07f1eSToby Isaac /*@C
2905d4d07f1eSToby Isaac   DMLocalToGlobalHookAdd - adds a callback to be run when a local to global is called
2906d4d07f1eSToby Isaac 
290720f4b53cSBarry Smith   Logically Collective
2908d4d07f1eSToby Isaac 
29094165533cSJose E. Roman   Input Parameters:
2910bb7acecfSBarry Smith + dm        - the `DM`
2911bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMLocalToGlobalBegin()`
2912bb7acecfSBarry Smith . endhook   - function to run after `DMLocalToGlobalEnd()` has completed
291320f4b53cSBarry Smith - ctx       - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2914d4d07f1eSToby Isaac 
291520f4b53cSBarry Smith   Calling sequence of `beginhook`:
2916a4e35b19SJacob Faibussowitsch + global - global `DM`
2917d4d07f1eSToby Isaac . l      - local vector
2918d4d07f1eSToby Isaac . mode   - mode
2919d4d07f1eSToby Isaac . g      - global vector
2920d4d07f1eSToby Isaac - ctx    - optional user-defined function context
2921d4d07f1eSToby Isaac 
292220f4b53cSBarry Smith   Calling sequence of `endhook`:
2923bb7acecfSBarry Smith + global - global `DM`
2924d4d07f1eSToby Isaac . l      - local vector
2925d4d07f1eSToby Isaac . mode   - mode
2926d4d07f1eSToby Isaac . g      - global vector
2927d4d07f1eSToby Isaac - ctx    - optional user-defined function context
2928d4d07f1eSToby Isaac 
2929d4d07f1eSToby Isaac   Level: advanced
2930d4d07f1eSToby Isaac 
29311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMRefineHookAdd()`, `DMGlobalToLocalHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2932d4d07f1eSToby Isaac @*/
2933a4e35b19SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), PetscErrorCode (*endhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), void *ctx)
2934d71ae5a4SJacob Faibussowitsch {
2935d4d07f1eSToby Isaac   DMLocalToGlobalHookLink link, *p;
2936d4d07f1eSToby Isaac 
2937d4d07f1eSToby Isaac   PetscFunctionBegin;
2938d4d07f1eSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2939d4d07f1eSToby Isaac   for (p = &dm->ltoghook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */
29409566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
2941d4d07f1eSToby Isaac   link->beginhook = beginhook;
2942d4d07f1eSToby Isaac   link->endhook   = endhook;
2943d4d07f1eSToby Isaac   link->ctx       = ctx;
2944d4d07f1eSToby Isaac   link->next      = NULL;
2945d4d07f1eSToby Isaac   *p              = link;
29463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2947d4d07f1eSToby Isaac }
2948d4d07f1eSToby Isaac 
2949d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMLocalToGlobalHook_Constraints(DM dm, Vec l, InsertMode mode, Vec g, void *ctx)
2950d71ae5a4SJacob Faibussowitsch {
29514c274da1SToby Isaac   PetscFunctionBegin;
2952a4e35b19SJacob Faibussowitsch   (void)g;
2953a4e35b19SJacob Faibussowitsch   (void)ctx;
29544c274da1SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
29552b6b7d09SToby Isaac   if (mode == ADD_VALUES || mode == ADD_ALL_VALUES || mode == ADD_BC_VALUES) {
29562b6b7d09SToby Isaac     Mat          cMat;
29572b6b7d09SToby Isaac     Vec          cVec;
29585db9a05bSToby Isaac     PetscInt     nRows;
29592b6b7d09SToby Isaac     PetscSection section, cSec;
29602b6b7d09SToby Isaac     PetscInt     pStart, pEnd, p, dof;
29612b6b7d09SToby Isaac 
29622b6b7d09SToby Isaac     PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, NULL));
29632b6b7d09SToby Isaac     if (!cMat) PetscFunctionReturn(PETSC_SUCCESS);
29645db9a05bSToby Isaac 
29659566063dSJacob Faibussowitsch     PetscCall(MatGetSize(cMat, &nRows, NULL));
29663ba16761SJacob Faibussowitsch     if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS);
29679566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
29689566063dSJacob Faibussowitsch     PetscCall(MatCreateVecs(cMat, NULL, &cVec));
29699566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd));
29704c274da1SToby Isaac     for (p = pStart; p < pEnd; p++) {
29719566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(cSec, p, &dof));
29724c274da1SToby Isaac       if (dof) {
29734c274da1SToby Isaac         PetscInt     d;
29744c274da1SToby Isaac         PetscScalar *vals;
29759566063dSJacob Faibussowitsch         PetscCall(VecGetValuesSection(l, section, p, &vals));
29769566063dSJacob Faibussowitsch         PetscCall(VecSetValuesSection(cVec, cSec, p, vals, mode));
29774c274da1SToby Isaac         /* for this to be the true transpose, we have to zero the values that
29784c274da1SToby Isaac          * we just extracted */
2979ad540459SPierre Jolivet         for (d = 0; d < dof; d++) vals[d] = 0.;
29804c274da1SToby Isaac       }
29814c274da1SToby Isaac     }
29829566063dSJacob Faibussowitsch     PetscCall(MatMultTransposeAdd(cMat, cVec, l, l));
29839566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&cVec));
29844c274da1SToby Isaac   }
29853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
29864c274da1SToby Isaac }
298701729b5cSPatrick Sanan /*@
298801729b5cSPatrick Sanan   DMLocalToGlobal - updates global vectors from local vectors
298901729b5cSPatrick Sanan 
299020f4b53cSBarry Smith   Neighbor-wise Collective
299101729b5cSPatrick Sanan 
299201729b5cSPatrick Sanan   Input Parameters:
2993bb7acecfSBarry Smith + dm   - the `DM` object
299401729b5cSPatrick Sanan . l    - the local vector
2995bb7acecfSBarry Smith . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point.
299601729b5cSPatrick Sanan - g    - the global vector
299701729b5cSPatrick Sanan 
299820f4b53cSBarry Smith   Level: beginner
299920f4b53cSBarry Smith 
300001729b5cSPatrick Sanan   Notes:
300101729b5cSPatrick Sanan   The communication involved in this update can be overlapped with computation by using
3002bb7acecfSBarry Smith   `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()`.
300301729b5cSPatrick Sanan 
3004bb7acecfSBarry Smith   In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation.
3005bb7acecfSBarry Smith 
3006bb7acecfSBarry Smith   `INSERT_VALUES` is not supported for `DMDA`; in that case simply compute the values directly into a global vector instead of a local one.
3007bb7acecfSBarry Smith 
3008bb7acecfSBarry Smith   Use `DMLocalToGlobalHookAdd()` to add additional operations that are performed on the data during the update process
300901729b5cSPatrick Sanan 
30101cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`, `DMLocalToGlobalHookAdd()`, `DMGlobaToLocallHookAdd()`
301101729b5cSPatrick Sanan @*/
3012d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobal(DM dm, Vec l, InsertMode mode, Vec g)
3013d71ae5a4SJacob Faibussowitsch {
301401729b5cSPatrick Sanan   PetscFunctionBegin;
30159566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalBegin(dm, l, mode, g));
30169566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalEnd(dm, l, mode, g));
30173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
301801729b5cSPatrick Sanan }
30194c274da1SToby Isaac 
302047c6ae99SBarry Smith /*@
302101729b5cSPatrick Sanan   DMLocalToGlobalBegin - begins updating global vectors from local vectors
30229a42bb27SBarry Smith 
302320f4b53cSBarry Smith   Neighbor-wise Collective
30249a42bb27SBarry Smith 
30259a42bb27SBarry Smith   Input Parameters:
3026bb7acecfSBarry Smith + dm   - the `DM` object
3027f6813fd5SJed Brown . l    - the local vector
3028aa624791SPierre Jolivet . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point.
30291eb28f2eSBarry Smith - g    - the global vector
30309a42bb27SBarry Smith 
303120f4b53cSBarry Smith   Level: intermediate
303220f4b53cSBarry Smith 
303395452b02SPatrick Sanan   Notes:
3034bb7acecfSBarry Smith   In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation.
3035bb7acecfSBarry Smith 
3036bb7acecfSBarry Smith   `INSERT_VALUES is` not supported for `DMDA`, in that case simply compute the values directly into a global vector instead of a local one.
3037bb7acecfSBarry Smith 
3038bb7acecfSBarry Smith   Use `DMLocalToGlobalEnd()` to complete the communication process.
3039bb7acecfSBarry Smith 
3040bb7acecfSBarry Smith   `DMLocalToGlobal()` is a short form of  `DMLocalToGlobalBegin()` and  `DMLocalToGlobalEnd()`
3041bb7acecfSBarry Smith 
3042bb7acecfSBarry Smith   `DMLocalToGlobalHookAdd()` may be used to provide additional operations that are performed during the update process.
30439a42bb27SBarry Smith 
30441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`
30459a42bb27SBarry Smith @*/
3046d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalBegin(DM dm, Vec l, InsertMode mode, Vec g)
3047d71ae5a4SJacob Faibussowitsch {
30487128ae9fSMatthew G Knepley   PetscSF                 sf;
304984330215SMatthew G. Knepley   PetscSection            s, gs;
3050d4d07f1eSToby Isaac   DMLocalToGlobalHookLink link;
3051ca3d3a14SMatthew G. Knepley   Vec                     tmpl;
3052ae5cfb4aSMatthew G. Knepley   const PetscScalar      *lArray;
3053ae5cfb4aSMatthew G. Knepley   PetscScalar            *gArray;
3054fa88e482SJed Brown   PetscBool               isInsert, transform, l_inplace = PETSC_FALSE, g_inplace = PETSC_FALSE;
3055d0295fc0SJunchao Zhang   PetscMemType            lmtype = PETSC_MEMTYPE_HOST, gmtype = PETSC_MEMTYPE_HOST;
30569a42bb27SBarry Smith 
30579a42bb27SBarry Smith   PetscFunctionBegin;
3058171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3059d4d07f1eSToby Isaac   for (link = dm->ltoghook; link; link = link->next) {
30601baa6e33SBarry Smith     if (link->beginhook) PetscCall((*link->beginhook)(dm, l, mode, g, link->ctx));
3061d4d07f1eSToby Isaac   }
30629566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalHook_Constraints(dm, l, mode, g, NULL));
30639566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
30649566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
30657128ae9fSMatthew G Knepley   switch (mode) {
30667128ae9fSMatthew G Knepley   case INSERT_VALUES:
30677128ae9fSMatthew G Knepley   case INSERT_ALL_VALUES:
3068d71ae5a4SJacob Faibussowitsch   case INSERT_BC_VALUES:
3069d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_TRUE;
3070d71ae5a4SJacob Faibussowitsch     break;
30717128ae9fSMatthew G Knepley   case ADD_VALUES:
30727128ae9fSMatthew G Knepley   case ADD_ALL_VALUES:
3073d71ae5a4SJacob Faibussowitsch   case ADD_BC_VALUES:
3074d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_FALSE;
3075d71ae5a4SJacob Faibussowitsch     break;
3076d71ae5a4SJacob Faibussowitsch   default:
3077d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode);
30787128ae9fSMatthew G Knepley   }
3079ca3d3a14SMatthew G. Knepley   if ((sf && !isInsert) || (s && isInsert)) {
30809566063dSJacob Faibussowitsch     PetscCall(DMHasBasisTransform(dm, &transform));
3081ca3d3a14SMatthew G. Knepley     if (transform) {
30829566063dSJacob Faibussowitsch       PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
30839566063dSJacob Faibussowitsch       PetscCall(VecCopy(l, tmpl));
30849566063dSJacob Faibussowitsch       PetscCall(DMPlexLocalToGlobalBasis(dm, tmpl));
30859566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(tmpl, &lArray));
3086fa88e482SJed Brown     } else if (isInsert) {
30879566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(l, &lArray));
3088fa88e482SJed Brown     } else {
30899566063dSJacob Faibussowitsch       PetscCall(VecGetArrayReadAndMemType(l, &lArray, &lmtype));
3090fa88e482SJed Brown       l_inplace = PETSC_TRUE;
3091ca3d3a14SMatthew G. Knepley     }
3092fa88e482SJed Brown     if (s && isInsert) {
30939566063dSJacob Faibussowitsch       PetscCall(VecGetArray(g, &gArray));
3094fa88e482SJed Brown     } else {
30959566063dSJacob Faibussowitsch       PetscCall(VecGetArrayAndMemType(g, &gArray, &gmtype));
3096fa88e482SJed Brown       g_inplace = PETSC_TRUE;
3097fa88e482SJed Brown     }
3098ca3d3a14SMatthew G. Knepley     if (sf && !isInsert) {
30999566063dSJacob Faibussowitsch       PetscCall(PetscSFReduceWithMemTypeBegin(sf, MPIU_SCALAR, lmtype, lArray, gmtype, gArray, MPIU_SUM));
310084330215SMatthew G. Knepley     } else if (s && isInsert) {
310184330215SMatthew G. Knepley       PetscInt gStart, pStart, pEnd, p;
310284330215SMatthew G. Knepley 
31039566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalSection(dm, &gs));
31049566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
31059566063dSJacob Faibussowitsch       PetscCall(VecGetOwnershipRange(g, &gStart, NULL));
310684330215SMatthew G. Knepley       for (p = pStart; p < pEnd; ++p) {
3107b3b16f48SMatthew G. Knepley         PetscInt dof, gdof, cdof, gcdof, off, goff, d, e;
310884330215SMatthew G. Knepley 
31099566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(s, p, &dof));
31109566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(gs, p, &gdof));
31119566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintDof(s, p, &cdof));
31129566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintDof(gs, p, &gcdof));
31139566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(s, p, &off));
31149566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(gs, p, &goff));
3115b3b16f48SMatthew G. Knepley         /* Ignore off-process data and points with no global data */
311603442857SMatthew G. Knepley         if (!gdof || goff < 0) continue;
31177a8be351SBarry Smith         PetscCheck(dof == gdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof);
3118b3b16f48SMatthew G. Knepley         /* If no constraints are enforced in the global vector */
3119b3b16f48SMatthew G. Knepley         if (!gcdof) {
312084330215SMatthew G. Knepley           for (d = 0; d < dof; ++d) gArray[goff - gStart + d] = lArray[off + d];
3121b3b16f48SMatthew G. Knepley           /* If constraints are enforced in the global vector */
3122b3b16f48SMatthew G. Knepley         } else if (cdof == gcdof) {
312384330215SMatthew G. Knepley           const PetscInt *cdofs;
312484330215SMatthew G. Knepley           PetscInt        cind = 0;
312584330215SMatthew G. Knepley 
31269566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetConstraintIndices(s, p, &cdofs));
3127b3b16f48SMatthew G. Knepley           for (d = 0, e = 0; d < dof; ++d) {
31289371c9d4SSatish Balay             if ((cind < cdof) && (d == cdofs[cind])) {
31299371c9d4SSatish Balay               ++cind;
31309371c9d4SSatish Balay               continue;
31319371c9d4SSatish Balay             }
3132b3b16f48SMatthew G. Knepley             gArray[goff - gStart + e++] = lArray[off + d];
313384330215SMatthew G. Knepley           }
31347a8be351SBarry Smith         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof);
313584330215SMatthew G. Knepley       }
3136ca3d3a14SMatthew G. Knepley     }
3137fa88e482SJed Brown     if (g_inplace) {
31389566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayAndMemType(g, &gArray));
3139fa88e482SJed Brown     } else {
31409566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(g, &gArray));
3141fa88e482SJed Brown     }
3142ca3d3a14SMatthew G. Knepley     if (transform) {
31439566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(tmpl, &lArray));
31449566063dSJacob Faibussowitsch       PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
3145fa88e482SJed Brown     } else if (l_inplace) {
31469566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayReadAndMemType(l, &lArray));
3147ca3d3a14SMatthew G. Knepley     } else {
31489566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(l, &lArray));
3149ca3d3a14SMatthew G. Knepley     }
31507128ae9fSMatthew G Knepley   } else {
3151fa1e479aSStefano Zampini     PetscUseTypeMethod(dm, localtoglobalbegin, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g);
31527128ae9fSMatthew G Knepley   }
31533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31549a42bb27SBarry Smith }
31559a42bb27SBarry Smith 
31569a42bb27SBarry Smith /*@
31579a42bb27SBarry Smith   DMLocalToGlobalEnd - updates global vectors from local vectors
315847c6ae99SBarry Smith 
315920f4b53cSBarry Smith   Neighbor-wise Collective
316047c6ae99SBarry Smith 
316147c6ae99SBarry Smith   Input Parameters:
3162bb7acecfSBarry Smith + dm   - the `DM` object
3163f6813fd5SJed Brown . l    - the local vector
3164bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES`
3165f6813fd5SJed Brown - g    - the global vector
316647c6ae99SBarry Smith 
316701729b5cSPatrick Sanan   Level: intermediate
316847c6ae99SBarry Smith 
3169bb7acecfSBarry Smith   Note:
3170bb7acecfSBarry Smith   See `DMLocalToGlobalBegin()` for full details
3171bb7acecfSBarry Smith 
317260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`
317347c6ae99SBarry Smith @*/
3174d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalEnd(DM dm, Vec l, InsertMode mode, Vec g)
3175d71ae5a4SJacob Faibussowitsch {
31767128ae9fSMatthew G Knepley   PetscSF                 sf;
317784330215SMatthew G. Knepley   PetscSection            s;
3178d4d07f1eSToby Isaac   DMLocalToGlobalHookLink link;
3179ca3d3a14SMatthew G. Knepley   PetscBool               isInsert, transform;
318047c6ae99SBarry Smith 
318147c6ae99SBarry Smith   PetscFunctionBegin;
3182171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
31839566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
31849566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
31857128ae9fSMatthew G Knepley   switch (mode) {
31867128ae9fSMatthew G Knepley   case INSERT_VALUES:
3187d71ae5a4SJacob Faibussowitsch   case INSERT_ALL_VALUES:
3188d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_TRUE;
3189d71ae5a4SJacob Faibussowitsch     break;
31907128ae9fSMatthew G Knepley   case ADD_VALUES:
3191d71ae5a4SJacob Faibussowitsch   case ADD_ALL_VALUES:
3192d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_FALSE;
3193d71ae5a4SJacob Faibussowitsch     break;
3194d71ae5a4SJacob Faibussowitsch   default:
3195d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode);
31967128ae9fSMatthew G Knepley   }
319784330215SMatthew G. Knepley   if (sf && !isInsert) {
3198ae5cfb4aSMatthew G. Knepley     const PetscScalar *lArray;
3199ae5cfb4aSMatthew G. Knepley     PetscScalar       *gArray;
3200ca3d3a14SMatthew G. Knepley     Vec                tmpl;
320184330215SMatthew G. Knepley 
32029566063dSJacob Faibussowitsch     PetscCall(DMHasBasisTransform(dm, &transform));
3203ca3d3a14SMatthew G. Knepley     if (transform) {
32049566063dSJacob Faibussowitsch       PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
32059566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(tmpl, &lArray));
3206ca3d3a14SMatthew G. Knepley     } else {
32079566063dSJacob Faibussowitsch       PetscCall(VecGetArrayReadAndMemType(l, &lArray, NULL));
3208ca3d3a14SMatthew G. Knepley     }
32099566063dSJacob Faibussowitsch     PetscCall(VecGetArrayAndMemType(g, &gArray, NULL));
32109566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceEnd(sf, MPIU_SCALAR, lArray, gArray, MPIU_SUM));
3211ca3d3a14SMatthew G. Knepley     if (transform) {
32129566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(tmpl, &lArray));
32139566063dSJacob Faibussowitsch       PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
3214ca3d3a14SMatthew G. Knepley     } else {
32159566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayReadAndMemType(l, &lArray));
3216ca3d3a14SMatthew G. Knepley     }
32179566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayAndMemType(g, &gArray));
321884330215SMatthew G. Knepley   } else if (s && isInsert) {
32197128ae9fSMatthew G Knepley   } else {
3220fa1e479aSStefano Zampini     PetscUseTypeMethod(dm, localtoglobalend, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g);
32217128ae9fSMatthew G Knepley   }
3222d4d07f1eSToby Isaac   for (link = dm->ltoghook; link; link = link->next) {
32239566063dSJacob Faibussowitsch     if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx));
3224d4d07f1eSToby Isaac   }
32253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
322647c6ae99SBarry Smith }
322747c6ae99SBarry Smith 
3228f089877aSRichard Tran Mills /*@
3229a4e35b19SJacob Faibussowitsch   DMLocalToLocalBegin - Begins the process of mapping values from a local vector (that include
3230a4e35b19SJacob Faibussowitsch   ghost points that contain irrelevant values) to another local vector where the ghost points
3231a4e35b19SJacob Faibussowitsch   in the second are set correctly from values on other MPI ranks.
3232f089877aSRichard Tran Mills 
323320f4b53cSBarry Smith   Neighbor-wise Collective
3234f089877aSRichard Tran Mills 
3235f089877aSRichard Tran Mills   Input Parameters:
3236bb7acecfSBarry Smith + dm   - the `DM` object
3237bc0a1609SRichard Tran Mills . g    - the original local vector
3238bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES`
3239f089877aSRichard Tran Mills 
3240bc0a1609SRichard Tran Mills   Output Parameter:
3241bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values
3242f089877aSRichard Tran Mills 
3243f089877aSRichard Tran Mills   Level: intermediate
3244f089877aSRichard Tran Mills 
324573ff1848SBarry Smith   Note:
3246a4e35b19SJacob Faibussowitsch   Must be followed by `DMLocalToLocalEnd()`.
3247a4e35b19SJacob Faibussowitsch 
324860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`
3249f089877aSRichard Tran Mills @*/
3250d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l)
3251d71ae5a4SJacob Faibussowitsch {
3252f089877aSRichard Tran Mills   PetscFunctionBegin;
3253f089877aSRichard Tran Mills   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
32549f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(g, VEC_CLASSID, 2);
32559f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(l, VEC_CLASSID, 4);
32569f4ada15SMatthew G. Knepley   PetscUseTypeMethod(dm, localtolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
32573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3258f089877aSRichard Tran Mills }
3259f089877aSRichard Tran Mills 
3260f089877aSRichard Tran Mills /*@
3261bb7acecfSBarry Smith   DMLocalToLocalEnd - Maps from a local vector to another local vector where the ghost
3262bb7acecfSBarry Smith   points in the second are set correctly. Must be preceded by `DMLocalToLocalBegin()`.
3263f089877aSRichard Tran Mills 
326420f4b53cSBarry Smith   Neighbor-wise Collective
3265f089877aSRichard Tran Mills 
3266f089877aSRichard Tran Mills   Input Parameters:
326760225df5SJacob Faibussowitsch + dm   - the `DM` object
3268bc0a1609SRichard Tran Mills . g    - the original local vector
3269bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES`
3270f089877aSRichard Tran Mills 
3271bc0a1609SRichard Tran Mills   Output Parameter:
3272bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values
3273f089877aSRichard Tran Mills 
3274f089877aSRichard Tran Mills   Level: intermediate
3275f089877aSRichard Tran Mills 
327660225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`
3277f089877aSRichard Tran Mills @*/
3278d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l)
3279d71ae5a4SJacob Faibussowitsch {
3280f089877aSRichard Tran Mills   PetscFunctionBegin;
3281f089877aSRichard Tran Mills   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
32829f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(g, VEC_CLASSID, 2);
32839f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(l, VEC_CLASSID, 4);
32849f4ada15SMatthew G. Knepley   PetscUseTypeMethod(dm, localtolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
32853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3286f089877aSRichard Tran Mills }
3287f089877aSRichard Tran Mills 
328847c6ae99SBarry Smith /*@
3289bb7acecfSBarry Smith   DMCoarsen - Coarsens a `DM` object using a standard, non-adaptive coarsening of the underlying mesh
329047c6ae99SBarry Smith 
329120f4b53cSBarry Smith   Collective
329247c6ae99SBarry Smith 
3293d8d19677SJose E. Roman   Input Parameters:
3294bb7acecfSBarry Smith + dm   - the `DM` object
329520f4b53cSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`)
329647c6ae99SBarry Smith 
329747c6ae99SBarry Smith   Output Parameter:
3298bb7acecfSBarry Smith . dmc - the coarsened `DM`
329947c6ae99SBarry Smith 
330047c6ae99SBarry Smith   Level: developer
330147c6ae99SBarry Smith 
330273ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`,
330373ff1848SBarry Smith           `DMCoarsenHookAdd()`, `DMCoarsenHookRemove()`
330447c6ae99SBarry Smith @*/
3305d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsen(DM dm, MPI_Comm comm, DM *dmc)
3306d71ae5a4SJacob Faibussowitsch {
3307b17ce1afSJed Brown   DMCoarsenHookLink link;
330847c6ae99SBarry Smith 
330947c6ae99SBarry Smith   PetscFunctionBegin;
3310171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
33119566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_Coarsen, dm, 0, 0, 0));
3312dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, coarsen, comm, dmc);
3313b9d85ea2SLisandro Dalcin   if (*dmc) {
3314a3574896SRichard Tran Mills     (*dmc)->bind_below = dm->bind_below; /* Propagate this from parent DM; otherwise -dm_bind_below will be useless for multigrid cases. */
33159566063dSJacob Faibussowitsch     PetscCall(DMSetCoarseDM(dm, *dmc));
331643842a1eSJed Brown     (*dmc)->ops->creatematrix = dm->ops->creatematrix;
33179566063dSJacob Faibussowitsch     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmc));
3318644e2e5bSBarry Smith     (*dmc)->ctx       = dm->ctx;
33190598a293SJed Brown     (*dmc)->levelup   = dm->levelup;
3320656b349aSBarry Smith     (*dmc)->leveldown = dm->leveldown + 1;
33219566063dSJacob Faibussowitsch     PetscCall(DMSetMatType(*dmc, dm->mattype));
3322b17ce1afSJed Brown     for (link = dm->coarsenhook; link; link = link->next) {
33239566063dSJacob Faibussowitsch       if (link->coarsenhook) PetscCall((*link->coarsenhook)(dm, *dmc, link->ctx));
3324b17ce1afSJed Brown     }
3325b9d85ea2SLisandro Dalcin   }
33269566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_Coarsen, dm, 0, 0, 0));
33277a8be351SBarry Smith   PetscCheck(*dmc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "NULL coarse mesh produced");
33283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3329b17ce1afSJed Brown }
3330b17ce1afSJed Brown 
3331bb9467b5SJed Brown /*@C
3332b17ce1afSJed Brown   DMCoarsenHookAdd - adds a callback to be run when restricting a nonlinear problem to the coarse grid
3333b17ce1afSJed Brown 
333420f4b53cSBarry Smith   Logically Collective; No Fortran Support
3335b17ce1afSJed Brown 
33364165533cSJose E. Roman   Input Parameters:
3337bb7acecfSBarry Smith + fine         - `DM` on which to run a hook when restricting to a coarser level
3338b17ce1afSJed Brown . coarsenhook  - function to run when setting up a coarser level
3339bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels (called once per `SNESSolve()`)
334020f4b53cSBarry Smith - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3341b17ce1afSJed Brown 
334220f4b53cSBarry Smith   Calling sequence of `coarsenhook`:
3343bb7acecfSBarry Smith + fine   - fine level `DM`
3344bb7acecfSBarry Smith . coarse - coarse level `DM` to restrict problem to
3345b17ce1afSJed Brown - ctx    - optional user-defined function context
3346b17ce1afSJed Brown 
334720f4b53cSBarry Smith   Calling sequence of `restricthook`:
3348bb7acecfSBarry Smith + fine      - fine level `DM`
3349bb7acecfSBarry Smith . mrestrict - matrix restricting a fine-level solution to the coarse grid, usually the transpose of the interpolation
3350c833c3b5SJed Brown . rscale    - scaling vector for restriction
3351c833c3b5SJed Brown . inject    - matrix restricting by injection
3352b17ce1afSJed Brown . coarse    - coarse level DM to update
3353b17ce1afSJed Brown - ctx       - optional user-defined function context
3354b17ce1afSJed Brown 
3355b17ce1afSJed Brown   Level: advanced
3356b17ce1afSJed Brown 
3357b17ce1afSJed Brown   Notes:
3358bb7acecfSBarry Smith   This function is only needed if auxiliary data, attached to the `DM` with `PetscObjectCompose()`, needs to be set up or passed from the fine `DM` to the coarse `DM`.
3359b17ce1afSJed Brown 
3360b17ce1afSJed Brown   If this function is called multiple times, the hooks will be run in the order they are added.
3361b17ce1afSJed Brown 
3362b17ce1afSJed Brown   In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to
3363bb7acecfSBarry Smith   extract the finest level information from its context (instead of from the `SNES`).
3364b17ce1afSJed Brown 
3365bb7acecfSBarry Smith   The hooks are automatically called by `DMRestrict()`
3366bb7acecfSBarry Smith 
33671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
3368b17ce1afSJed Brown @*/
3369a4e35b19SJacob Faibussowitsch PetscErrorCode DMCoarsenHookAdd(DM fine, PetscErrorCode (*coarsenhook)(DM fine, DM coarse, void *ctx), PetscErrorCode (*restricthook)(DM fine, Mat mrestrict, Vec rscale, Mat inject, DM coarse, void *ctx), void *ctx)
3370d71ae5a4SJacob Faibussowitsch {
3371b17ce1afSJed Brown   DMCoarsenHookLink link, *p;
3372b17ce1afSJed Brown 
3373b17ce1afSJed Brown   PetscFunctionBegin;
3374b17ce1afSJed Brown   PetscValidHeaderSpecific(fine, DM_CLASSID, 1);
33751e3d8eccSJed Brown   for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
33763ba16761SJacob Faibussowitsch     if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
33771e3d8eccSJed Brown   }
33789566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
3379b17ce1afSJed Brown   link->coarsenhook  = coarsenhook;
3380b17ce1afSJed Brown   link->restricthook = restricthook;
3381b17ce1afSJed Brown   link->ctx          = ctx;
33820298fd71SBarry Smith   link->next         = NULL;
3383b17ce1afSJed Brown   *p                 = link;
33843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3385b17ce1afSJed Brown }
3386b17ce1afSJed Brown 
3387dc822a44SJed Brown /*@C
3388bb7acecfSBarry Smith   DMCoarsenHookRemove - remove a callback set with `DMCoarsenHookAdd()`
3389dc822a44SJed Brown 
339020f4b53cSBarry Smith   Logically Collective; No Fortran Support
3391dc822a44SJed Brown 
33924165533cSJose E. Roman   Input Parameters:
3393bb7acecfSBarry Smith + fine         - `DM` on which to run a hook when restricting to a coarser level
3394dc822a44SJed Brown . coarsenhook  - function to run when setting up a coarser level
3395bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels
339620f4b53cSBarry Smith - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3397dc822a44SJed Brown 
3398dc822a44SJed Brown   Level: advanced
3399dc822a44SJed Brown 
340073ff1848SBarry Smith   Notes:
340173ff1848SBarry Smith   This function does nothing if the `coarsenhook` is not in the list.
340273ff1848SBarry Smith 
340373ff1848SBarry Smith   See `DMCoarsenHookAdd()` for the calling sequence of `coarsenhook` and `restricthook`
3404dc822a44SJed Brown 
34051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
3406dc822a44SJed Brown @*/
3407d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookRemove(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx)
3408d71ae5a4SJacob Faibussowitsch {
3409dc822a44SJed Brown   DMCoarsenHookLink link, *p;
3410dc822a44SJed Brown 
3411dc822a44SJed Brown   PetscFunctionBegin;
3412dc822a44SJed Brown   PetscValidHeaderSpecific(fine, DM_CLASSID, 1);
3413dc822a44SJed Brown   for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Search the list of current hooks */
3414dc822a44SJed Brown     if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) {
3415dc822a44SJed Brown       link = *p;
3416dc822a44SJed Brown       *p   = link->next;
34179566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
3418dc822a44SJed Brown       break;
3419dc822a44SJed Brown     }
3420dc822a44SJed Brown   }
34213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3422dc822a44SJed Brown }
3423dc822a44SJed Brown 
3424b17ce1afSJed Brown /*@
3425bb7acecfSBarry Smith   DMRestrict - restricts user-defined problem data to a coarser `DM` by running hooks registered by `DMCoarsenHookAdd()`
3426b17ce1afSJed Brown 
3427b17ce1afSJed Brown   Collective if any hooks are
3428b17ce1afSJed Brown 
34294165533cSJose E. Roman   Input Parameters:
3430bb7acecfSBarry Smith + fine    - finer `DM` from which the data is obtained
3431bb7acecfSBarry Smith . restrct - restriction matrix, apply using `MatRestrict()`, usually the transpose of the interpolation
3432e91eccc2SStefano Zampini . rscale  - scaling vector for restriction
3433bb7acecfSBarry Smith . inject  - injection matrix, also use `MatRestrict()`
343420f4b53cSBarry Smith - coarse  - coarser `DM` to update
3435b17ce1afSJed Brown 
3436b17ce1afSJed Brown   Level: developer
3437b17ce1afSJed Brown 
343873ff1848SBarry Smith   Developer Note:
3439bb7acecfSBarry Smith   Though this routine is called `DMRestrict()` the hooks are added with `DMCoarsenHookAdd()`, a consistent terminology would be better
3440bb7acecfSBarry Smith 
34411cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMInterpolate()`, `DMRefineHookAdd()`
3442b17ce1afSJed Brown @*/
3443d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestrict(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse)
3444d71ae5a4SJacob Faibussowitsch {
3445b17ce1afSJed Brown   DMCoarsenHookLink link;
3446b17ce1afSJed Brown 
3447b17ce1afSJed Brown   PetscFunctionBegin;
3448b17ce1afSJed Brown   for (link = fine->coarsenhook; link; link = link->next) {
34491baa6e33SBarry Smith     if (link->restricthook) PetscCall((*link->restricthook)(fine, restrct, rscale, inject, coarse, link->ctx));
3450b17ce1afSJed Brown   }
34513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
345247c6ae99SBarry Smith }
345347c6ae99SBarry Smith 
3454bb9467b5SJed Brown /*@C
345573ff1848SBarry Smith   DMSubDomainHookAdd - adds a callback to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()`
34565dbd56e3SPeter Brune 
345720f4b53cSBarry Smith   Logically Collective; No Fortran Support
34585dbd56e3SPeter Brune 
34594165533cSJose E. Roman   Input Parameters:
3460bb7acecfSBarry Smith + global       - global `DM`
3461bb7acecfSBarry Smith . ddhook       - function to run to pass data to the decomposition `DM` upon its creation
34625dbd56e3SPeter Brune . restricthook - function to run to update data on block solve (at the beginning of the block solve)
346320f4b53cSBarry Smith - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
34645dbd56e3SPeter Brune 
346520f4b53cSBarry Smith   Calling sequence of `ddhook`:
3466bb7acecfSBarry Smith + global - global `DM`
346773ff1848SBarry Smith . block  - subdomain `DM`
3468ec4806b8SPeter Brune - ctx    - optional user-defined function context
3469ec4806b8SPeter Brune 
347020f4b53cSBarry Smith   Calling sequence of `restricthook`:
3471bb7acecfSBarry Smith + global - global `DM`
347273ff1848SBarry Smith . out    - scatter to the outer (with ghost and overlap points) sub vector
347373ff1848SBarry Smith . in     - scatter to sub vector values only owned locally
347473ff1848SBarry Smith . block  - subdomain `DM`
34755dbd56e3SPeter Brune - ctx    - optional user-defined function context
34765dbd56e3SPeter Brune 
34775dbd56e3SPeter Brune   Level: advanced
34785dbd56e3SPeter Brune 
34795dbd56e3SPeter Brune   Notes:
348073ff1848SBarry Smith   This function can be used if auxiliary data needs to be set up on subdomain `DM`s.
34815dbd56e3SPeter Brune 
34825dbd56e3SPeter Brune   If this function is called multiple times, the hooks will be run in the order they are added.
34835dbd56e3SPeter Brune 
34845dbd56e3SPeter Brune   In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to
3485bb7acecfSBarry Smith   extract the global information from its context (instead of from the `SNES`).
34865dbd56e3SPeter Brune 
348773ff1848SBarry Smith   Developer Note:
348873ff1848SBarry Smith   It is unclear what "block solve" means within the definition of `restricthook`
348973ff1848SBarry Smith 
349073ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`, `DMCreateDomainDecomposition()`
34915dbd56e3SPeter Brune @*/
3492a4e35b19SJacob Faibussowitsch PetscErrorCode DMSubDomainHookAdd(DM global, PetscErrorCode (*ddhook)(DM global, DM block, void *ctx), PetscErrorCode (*restricthook)(DM global, VecScatter out, VecScatter in, DM block, void *ctx), void *ctx)
3493d71ae5a4SJacob Faibussowitsch {
3494be081cd6SPeter Brune   DMSubDomainHookLink link, *p;
34955dbd56e3SPeter Brune 
34965dbd56e3SPeter Brune   PetscFunctionBegin;
34975dbd56e3SPeter Brune   PetscValidHeaderSpecific(global, DM_CLASSID, 1);
3498b3a6b972SJed Brown   for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
34993ba16761SJacob Faibussowitsch     if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
3500b3a6b972SJed Brown   }
35019566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
35025dbd56e3SPeter Brune   link->restricthook = restricthook;
3503be081cd6SPeter Brune   link->ddhook       = ddhook;
35045dbd56e3SPeter Brune   link->ctx          = ctx;
35050298fd71SBarry Smith   link->next         = NULL;
35065dbd56e3SPeter Brune   *p                 = link;
35073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35085dbd56e3SPeter Brune }
35095dbd56e3SPeter Brune 
3510b3a6b972SJed Brown /*@C
351173ff1848SBarry Smith   DMSubDomainHookRemove - remove a callback from the list to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()`
3512b3a6b972SJed Brown 
351320f4b53cSBarry Smith   Logically Collective; No Fortran Support
3514b3a6b972SJed Brown 
35154165533cSJose E. Roman   Input Parameters:
3516bb7acecfSBarry Smith + global       - global `DM`
3517bb7acecfSBarry Smith . ddhook       - function to run to pass data to the decomposition `DM` upon its creation
3518b3a6b972SJed Brown . restricthook - function to run to update data on block solve (at the beginning of the block solve)
351920f4b53cSBarry Smith - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3520b3a6b972SJed Brown 
3521b3a6b972SJed Brown   Level: advanced
3522b3a6b972SJed Brown 
352373ff1848SBarry Smith   Note:
352473ff1848SBarry Smith   See `DMSubDomainHookAdd()` for the calling sequences of `ddhook` and `restricthook`
352573ff1848SBarry Smith 
352673ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`,
352773ff1848SBarry Smith           `DMCreateDomainDecomposition()`
3528b3a6b972SJed Brown @*/
3529d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookRemove(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx)
3530d71ae5a4SJacob Faibussowitsch {
3531b3a6b972SJed Brown   DMSubDomainHookLink link, *p;
3532b3a6b972SJed Brown 
3533b3a6b972SJed Brown   PetscFunctionBegin;
3534b3a6b972SJed Brown   PetscValidHeaderSpecific(global, DM_CLASSID, 1);
3535b3a6b972SJed Brown   for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Search the list of current hooks */
3536b3a6b972SJed Brown     if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) {
3537b3a6b972SJed Brown       link = *p;
3538b3a6b972SJed Brown       *p   = link->next;
35399566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
3540b3a6b972SJed Brown       break;
3541b3a6b972SJed Brown     }
3542b3a6b972SJed Brown   }
35433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3544b3a6b972SJed Brown }
3545b3a6b972SJed Brown 
35465dbd56e3SPeter Brune /*@
354773ff1848SBarry Smith   DMSubDomainRestrict - restricts user-defined problem data to a subdomain `DM` by running hooks registered by `DMSubDomainHookAdd()`
35485dbd56e3SPeter Brune 
35495dbd56e3SPeter Brune   Collective if any hooks are
35505dbd56e3SPeter Brune 
35514165533cSJose E. Roman   Input Parameters:
3552a4e35b19SJacob Faibussowitsch + global   - The global `DM` to use as a base
3553a4e35b19SJacob Faibussowitsch . oscatter - The scatter from domain global vector filling subdomain global vector with overlap
3554a4e35b19SJacob Faibussowitsch . gscatter - The scatter from domain global vector filling subdomain local vector with ghosts
3555a4e35b19SJacob Faibussowitsch - subdm    - The subdomain `DM` to update
35565dbd56e3SPeter Brune 
35575dbd56e3SPeter Brune   Level: developer
35585dbd56e3SPeter Brune 
355973ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMCreateDomainDecomposition()`
35605dbd56e3SPeter Brune @*/
3561d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainRestrict(DM global, VecScatter oscatter, VecScatter gscatter, DM subdm)
3562d71ae5a4SJacob Faibussowitsch {
3563be081cd6SPeter Brune   DMSubDomainHookLink link;
35645dbd56e3SPeter Brune 
35655dbd56e3SPeter Brune   PetscFunctionBegin;
3566be081cd6SPeter Brune   for (link = global->subdomainhook; link; link = link->next) {
35671baa6e33SBarry Smith     if (link->restricthook) PetscCall((*link->restricthook)(global, oscatter, gscatter, subdm, link->ctx));
35685dbd56e3SPeter Brune   }
35693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35705dbd56e3SPeter Brune }
35715dbd56e3SPeter Brune 
35725fe1f584SPeter Brune /*@
3573bb7acecfSBarry Smith   DMGetCoarsenLevel - Gets the number of coarsenings that have generated this `DM`.
35745fe1f584SPeter Brune 
35755fe1f584SPeter Brune   Not Collective
35765fe1f584SPeter Brune 
35775fe1f584SPeter Brune   Input Parameter:
3578bb7acecfSBarry Smith . dm - the `DM` object
35795fe1f584SPeter Brune 
35805fe1f584SPeter Brune   Output Parameter:
35816a7d9d85SPeter Brune . level - number of coarsenings
35825fe1f584SPeter Brune 
35835fe1f584SPeter Brune   Level: developer
35845fe1f584SPeter Brune 
35851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMSetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
35865fe1f584SPeter Brune @*/
3587d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarsenLevel(DM dm, PetscInt *level)
3588d71ae5a4SJacob Faibussowitsch {
35895fe1f584SPeter Brune   PetscFunctionBegin;
35905fe1f584SPeter Brune   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
35914f572ea9SToby Isaac   PetscAssertPointer(level, 2);
35925fe1f584SPeter Brune   *level = dm->leveldown;
35933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35945fe1f584SPeter Brune }
35955fe1f584SPeter Brune 
35969a64c4a8SMatthew G. Knepley /*@
3597bb7acecfSBarry Smith   DMSetCoarsenLevel - Sets the number of coarsenings that have generated this `DM`.
35989a64c4a8SMatthew G. Knepley 
359920f4b53cSBarry Smith   Collective
36009a64c4a8SMatthew G. Knepley 
36019a64c4a8SMatthew G. Knepley   Input Parameters:
3602bb7acecfSBarry Smith + dm    - the `DM` object
36039a64c4a8SMatthew G. Knepley - level - number of coarsenings
36049a64c4a8SMatthew G. Knepley 
36059a64c4a8SMatthew G. Knepley   Level: developer
36069a64c4a8SMatthew G. Knepley 
3607bb7acecfSBarry Smith   Note:
3608bb7acecfSBarry Smith   This is rarely used directly, the information is automatically set when a `DM` is created with `DMCoarsen()`
3609bb7acecfSBarry Smith 
361042747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
36119a64c4a8SMatthew G. Knepley @*/
3612d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarsenLevel(DM dm, PetscInt level)
3613d71ae5a4SJacob Faibussowitsch {
36149a64c4a8SMatthew G. Knepley   PetscFunctionBegin;
36159a64c4a8SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36169a64c4a8SMatthew G. Knepley   dm->leveldown = level;
36173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
36189a64c4a8SMatthew G. Knepley }
36199a64c4a8SMatthew G. Knepley 
3620cc4c1da9SBarry Smith /*@
3621bb7acecfSBarry Smith   DMRefineHierarchy - Refines a `DM` object, all levels at once
362247c6ae99SBarry Smith 
362320f4b53cSBarry Smith   Collective
362447c6ae99SBarry Smith 
3625d8d19677SJose E. Roman   Input Parameters:
3626bb7acecfSBarry Smith + dm      - the `DM` object
362747c6ae99SBarry Smith - nlevels - the number of levels of refinement
362847c6ae99SBarry Smith 
362947c6ae99SBarry Smith   Output Parameter:
3630bb7acecfSBarry Smith . dmf - the refined `DM` hierarchy
363147c6ae99SBarry Smith 
363247c6ae99SBarry Smith   Level: developer
363347c6ae99SBarry Smith 
36341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMCoarsenHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
363547c6ae99SBarry Smith @*/
3636d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHierarchy(DM dm, PetscInt nlevels, DM dmf[])
3637d71ae5a4SJacob Faibussowitsch {
363847c6ae99SBarry Smith   PetscFunctionBegin;
3639171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36407a8be351SBarry Smith   PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative");
36413ba16761SJacob Faibussowitsch   if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS);
36424f572ea9SToby Isaac   PetscAssertPointer(dmf, 3);
3643213acdd3SPierre Jolivet   if (dm->ops->refine && !dm->ops->refinehierarchy) {
364447c6ae99SBarry Smith     PetscInt i;
364547c6ae99SBarry Smith 
36469566063dSJacob Faibussowitsch     PetscCall(DMRefine(dm, PetscObjectComm((PetscObject)dm), &dmf[0]));
364748a46eb9SPierre Jolivet     for (i = 1; i < nlevels; i++) PetscCall(DMRefine(dmf[i - 1], PetscObjectComm((PetscObject)dm), &dmf[i]));
3648213acdd3SPierre Jolivet   } else PetscUseTypeMethod(dm, refinehierarchy, nlevels, dmf);
36493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
365047c6ae99SBarry Smith }
365147c6ae99SBarry Smith 
3652cc4c1da9SBarry Smith /*@
3653bb7acecfSBarry Smith   DMCoarsenHierarchy - Coarsens a `DM` object, all levels at once
365447c6ae99SBarry Smith 
365520f4b53cSBarry Smith   Collective
365647c6ae99SBarry Smith 
3657d8d19677SJose E. Roman   Input Parameters:
3658bb7acecfSBarry Smith + dm      - the `DM` object
365947c6ae99SBarry Smith - nlevels - the number of levels of coarsening
366047c6ae99SBarry Smith 
366147c6ae99SBarry Smith   Output Parameter:
3662bb7acecfSBarry Smith . dmc - the coarsened `DM` hierarchy
366347c6ae99SBarry Smith 
366447c6ae99SBarry Smith   Level: developer
366547c6ae99SBarry Smith 
36661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMRefineHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
366747c6ae99SBarry Smith @*/
3668d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHierarchy(DM dm, PetscInt nlevels, DM dmc[])
3669d71ae5a4SJacob Faibussowitsch {
367047c6ae99SBarry Smith   PetscFunctionBegin;
3671171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36727a8be351SBarry Smith   PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative");
36733ba16761SJacob Faibussowitsch   if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS);
36744f572ea9SToby Isaac   PetscAssertPointer(dmc, 3);
3675213acdd3SPierre Jolivet   if (dm->ops->coarsen && !dm->ops->coarsenhierarchy) {
367647c6ae99SBarry Smith     PetscInt i;
367747c6ae99SBarry Smith 
36789566063dSJacob Faibussowitsch     PetscCall(DMCoarsen(dm, PetscObjectComm((PetscObject)dm), &dmc[0]));
367948a46eb9SPierre Jolivet     for (i = 1; i < nlevels; i++) PetscCall(DMCoarsen(dmc[i - 1], PetscObjectComm((PetscObject)dm), &dmc[i]));
3680213acdd3SPierre Jolivet   } else PetscUseTypeMethod(dm, coarsenhierarchy, nlevels, dmc);
36813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
368247c6ae99SBarry Smith }
368347c6ae99SBarry Smith 
36841a266240SBarry Smith /*@C
3685bb7acecfSBarry Smith   DMSetApplicationContextDestroy - Sets a user function that will be called to destroy the application context when the `DM` is destroyed
36861a266240SBarry Smith 
3687bb7acecfSBarry Smith   Logically Collective if the function is collective
36881a266240SBarry Smith 
36891a266240SBarry Smith   Input Parameters:
3690bb7acecfSBarry Smith + dm      - the `DM` object
36911a266240SBarry Smith - destroy - the destroy function
36921a266240SBarry Smith 
36931a266240SBarry Smith   Level: intermediate
36941a266240SBarry Smith 
36951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
3696f07f9ceaSJed Brown @*/
3697d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContextDestroy(DM dm, PetscErrorCode (*destroy)(void **))
3698d71ae5a4SJacob Faibussowitsch {
36991a266240SBarry Smith   PetscFunctionBegin;
3700171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
37011a266240SBarry Smith   dm->ctxdestroy = destroy;
37023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
37031a266240SBarry Smith }
37041a266240SBarry Smith 
3705b07ff414SBarry Smith /*@
3706bb7acecfSBarry Smith   DMSetApplicationContext - Set a user context into a `DM` object
370747c6ae99SBarry Smith 
370847c6ae99SBarry Smith   Not Collective
370947c6ae99SBarry Smith 
371047c6ae99SBarry Smith   Input Parameters:
3711bb7acecfSBarry Smith + dm  - the `DM` object
371247c6ae99SBarry Smith - ctx - the user context
371347c6ae99SBarry Smith 
371447c6ae99SBarry Smith   Level: intermediate
371547c6ae99SBarry Smith 
3716e33b3f0fSStefano Zampini   Notes:
371735cb6cd3SPierre Jolivet   A user context is a way to pass problem specific information that is accessible whenever the `DM` is available
3718e33b3f0fSStefano Zampini   In a multilevel solver, the user context is shared by all the `DM` in the hierarchy; it is thus not advisable
3719e33b3f0fSStefano Zampini   to store objects that represent discretized quantities inside the context.
3720bb7acecfSBarry Smith 
372160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
372247c6ae99SBarry Smith @*/
3723d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContext(DM dm, void *ctx)
3724d71ae5a4SJacob Faibussowitsch {
372547c6ae99SBarry Smith   PetscFunctionBegin;
3726171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
372747c6ae99SBarry Smith   dm->ctx = ctx;
37283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
372947c6ae99SBarry Smith }
373047c6ae99SBarry Smith 
373147c6ae99SBarry Smith /*@
3732bb7acecfSBarry Smith   DMGetApplicationContext - Gets a user context from a `DM` object
373347c6ae99SBarry Smith 
373447c6ae99SBarry Smith   Not Collective
373547c6ae99SBarry Smith 
373647c6ae99SBarry Smith   Input Parameter:
3737bb7acecfSBarry Smith . dm - the `DM` object
373847c6ae99SBarry Smith 
373947c6ae99SBarry Smith   Output Parameter:
374047c6ae99SBarry Smith . ctx - the user context
374147c6ae99SBarry Smith 
374247c6ae99SBarry Smith   Level: intermediate
374347c6ae99SBarry Smith 
3744bb7acecfSBarry Smith   Note:
374535cb6cd3SPierre Jolivet   A user context is a way to pass problem specific information that is accessible whenever the `DM` is available
3746bb7acecfSBarry Smith 
374742747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
374847c6ae99SBarry Smith @*/
3749d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetApplicationContext(DM dm, void *ctx)
3750d71ae5a4SJacob Faibussowitsch {
375147c6ae99SBarry Smith   PetscFunctionBegin;
3752171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
37531b2093e4SBarry Smith   *(void **)ctx = dm->ctx;
37543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
375547c6ae99SBarry Smith }
375647c6ae99SBarry Smith 
375708da532bSDmitry Karpeev /*@C
3758bb7acecfSBarry Smith   DMSetVariableBounds - sets a function to compute the lower and upper bound vectors for `SNESVI`.
375908da532bSDmitry Karpeev 
376020f4b53cSBarry Smith   Logically Collective
376108da532bSDmitry Karpeev 
3762d8d19677SJose E. Roman   Input Parameters:
376308da532bSDmitry Karpeev + dm - the DM object
376420f4b53cSBarry Smith - f  - the function that computes variable bounds used by SNESVI (use `NULL` to cancel a previous function that was set)
376508da532bSDmitry Karpeev 
376608da532bSDmitry Karpeev   Level: intermediate
376708da532bSDmitry Karpeev 
37681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`,
3769db781477SPatrick Sanan          `DMSetJacobian()`
377008da532bSDmitry Karpeev @*/
3771d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVariableBounds(DM dm, PetscErrorCode (*f)(DM, Vec, Vec))
3772d71ae5a4SJacob Faibussowitsch {
377308da532bSDmitry Karpeev   PetscFunctionBegin;
37745a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
377508da532bSDmitry Karpeev   dm->ops->computevariablebounds = f;
37763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
377708da532bSDmitry Karpeev }
377808da532bSDmitry Karpeev 
377908da532bSDmitry Karpeev /*@
3780bb7acecfSBarry Smith   DMHasVariableBounds - does the `DM` object have a variable bounds function?
378108da532bSDmitry Karpeev 
378208da532bSDmitry Karpeev   Not Collective
378308da532bSDmitry Karpeev 
378408da532bSDmitry Karpeev   Input Parameter:
3785bb7acecfSBarry Smith . dm - the `DM` object to destroy
378608da532bSDmitry Karpeev 
378708da532bSDmitry Karpeev   Output Parameter:
3788bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the variable bounds function exists
378908da532bSDmitry Karpeev 
379008da532bSDmitry Karpeev   Level: developer
379108da532bSDmitry Karpeev 
37921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
379308da532bSDmitry Karpeev @*/
3794d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasVariableBounds(DM dm, PetscBool *flg)
3795d71ae5a4SJacob Faibussowitsch {
379608da532bSDmitry Karpeev   PetscFunctionBegin;
37975a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
37984f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
379908da532bSDmitry Karpeev   *flg = (dm->ops->computevariablebounds) ? PETSC_TRUE : PETSC_FALSE;
38003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
380108da532bSDmitry Karpeev }
380208da532bSDmitry Karpeev 
3803cc4c1da9SBarry Smith /*@
3804bb7acecfSBarry Smith   DMComputeVariableBounds - compute variable bounds used by `SNESVI`.
380508da532bSDmitry Karpeev 
380620f4b53cSBarry Smith   Logically Collective
380708da532bSDmitry Karpeev 
3808f899ff85SJose E. Roman   Input Parameter:
3809bb7acecfSBarry Smith . dm - the `DM` object
381008da532bSDmitry Karpeev 
381160225df5SJacob Faibussowitsch   Output Parameters:
381208da532bSDmitry Karpeev + xl - lower bound
381308da532bSDmitry Karpeev - xu - upper bound
381408da532bSDmitry Karpeev 
3815907376e6SBarry Smith   Level: advanced
3816907376e6SBarry Smith 
381720f4b53cSBarry Smith   Note:
381895452b02SPatrick Sanan   This is generally not called by users. It calls the function provided by the user with DMSetVariableBounds()
381908da532bSDmitry Karpeev 
38201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
382108da532bSDmitry Karpeev @*/
3822d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeVariableBounds(DM dm, Vec xl, Vec xu)
3823d71ae5a4SJacob Faibussowitsch {
382408da532bSDmitry Karpeev   PetscFunctionBegin;
38255a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
382608da532bSDmitry Karpeev   PetscValidHeaderSpecific(xl, VEC_CLASSID, 2);
38275a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(xu, VEC_CLASSID, 3);
3828dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, computevariablebounds, xl, xu);
38293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
383008da532bSDmitry Karpeev }
383108da532bSDmitry Karpeev 
3832b0ae01b7SPeter Brune /*@
3833bb7acecfSBarry Smith   DMHasColoring - does the `DM` object have a method of providing a coloring?
3834b0ae01b7SPeter Brune 
3835b0ae01b7SPeter Brune   Not Collective
3836b0ae01b7SPeter Brune 
3837b0ae01b7SPeter Brune   Input Parameter:
3838b0ae01b7SPeter Brune . dm - the DM object
3839b0ae01b7SPeter Brune 
3840b0ae01b7SPeter Brune   Output Parameter:
3841bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateColoring()`.
3842b0ae01b7SPeter Brune 
3843b0ae01b7SPeter Brune   Level: developer
3844b0ae01b7SPeter Brune 
38451cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateColoring()`
3846b0ae01b7SPeter Brune @*/
3847d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasColoring(DM dm, PetscBool *flg)
3848d71ae5a4SJacob Faibussowitsch {
3849b0ae01b7SPeter Brune   PetscFunctionBegin;
38505a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
38514f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
3852b0ae01b7SPeter Brune   *flg = (dm->ops->getcoloring) ? PETSC_TRUE : PETSC_FALSE;
38533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3854b0ae01b7SPeter Brune }
3855b0ae01b7SPeter Brune 
38563ad4599aSBarry Smith /*@
3857bb7acecfSBarry Smith   DMHasCreateRestriction - does the `DM` object have a method of providing a restriction?
38583ad4599aSBarry Smith 
38593ad4599aSBarry Smith   Not Collective
38603ad4599aSBarry Smith 
38613ad4599aSBarry Smith   Input Parameter:
3862bb7acecfSBarry Smith . dm - the `DM` object
38633ad4599aSBarry Smith 
38643ad4599aSBarry Smith   Output Parameter:
3865bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateRestriction()`.
38663ad4599aSBarry Smith 
38673ad4599aSBarry Smith   Level: developer
38683ad4599aSBarry Smith 
38691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateRestriction()`, `DMHasCreateInterpolation()`, `DMHasCreateInjection()`
38703ad4599aSBarry Smith @*/
3871d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateRestriction(DM dm, PetscBool *flg)
3872d71ae5a4SJacob Faibussowitsch {
38733ad4599aSBarry Smith   PetscFunctionBegin;
38745a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
38754f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
38763ad4599aSBarry Smith   *flg = (dm->ops->createrestriction) ? PETSC_TRUE : PETSC_FALSE;
38773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
38783ad4599aSBarry Smith }
38793ad4599aSBarry Smith 
3880a7058e45SLawrence Mitchell /*@
3881bb7acecfSBarry Smith   DMHasCreateInjection - does the `DM` object have a method of providing an injection?
3882a7058e45SLawrence Mitchell 
3883a7058e45SLawrence Mitchell   Not Collective
3884a7058e45SLawrence Mitchell 
3885a7058e45SLawrence Mitchell   Input Parameter:
3886bb7acecfSBarry Smith . dm - the `DM` object
3887a7058e45SLawrence Mitchell 
3888a7058e45SLawrence Mitchell   Output Parameter:
3889bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateInjection()`.
3890a7058e45SLawrence Mitchell 
3891a7058e45SLawrence Mitchell   Level: developer
3892a7058e45SLawrence Mitchell 
38931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateInjection()`, `DMHasCreateRestriction()`, `DMHasCreateInterpolation()`
3894a7058e45SLawrence Mitchell @*/
3895d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateInjection(DM dm, PetscBool *flg)
3896d71ae5a4SJacob Faibussowitsch {
3897a7058e45SLawrence Mitchell   PetscFunctionBegin;
38985a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
38994f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
3900dbbe0bcdSBarry Smith   if (dm->ops->hascreateinjection) PetscUseTypeMethod(dm, hascreateinjection, flg);
3901ad540459SPierre Jolivet   else *flg = (dm->ops->createinjection) ? PETSC_TRUE : PETSC_FALSE;
39023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3903a7058e45SLawrence Mitchell }
3904a7058e45SLawrence Mitchell 
39050298fd71SBarry Smith PetscFunctionList DMList              = NULL;
3906264ace61SBarry Smith PetscBool         DMRegisterAllCalled = PETSC_FALSE;
3907264ace61SBarry Smith 
3908cc4c1da9SBarry Smith /*@
3909bb7acecfSBarry Smith   DMSetType - Builds a `DM`, for a particular `DM` implementation.
3910264ace61SBarry Smith 
391120f4b53cSBarry Smith   Collective
3912264ace61SBarry Smith 
3913264ace61SBarry Smith   Input Parameters:
3914bb7acecfSBarry Smith + dm     - The `DM` object
3915bb7acecfSBarry Smith - method - The name of the `DMType`, for example `DMDA`, `DMPLEX`
3916264ace61SBarry Smith 
3917264ace61SBarry Smith   Options Database Key:
3918bb7acecfSBarry Smith . -dm_type <type> - Sets the `DM` type; use -help for a list of available types
3919264ace61SBarry Smith 
3920264ace61SBarry Smith   Level: intermediate
3921264ace61SBarry Smith 
3922bb7acecfSBarry Smith   Note:
39230462cc06SPierre Jolivet   Of the `DM` is constructed by directly calling a function to construct a particular `DM`, for example, `DMDACreate2d()` or `DMPlexCreateBoxMesh()`
3924bb7acecfSBarry Smith 
39251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMGetType()`, `DMCreate()`, `DMDACreate2d()`
3926264ace61SBarry Smith @*/
3927d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetType(DM dm, DMType method)
3928d71ae5a4SJacob Faibussowitsch {
3929264ace61SBarry Smith   PetscErrorCode (*r)(DM);
3930264ace61SBarry Smith   PetscBool match;
3931264ace61SBarry Smith 
3932264ace61SBarry Smith   PetscFunctionBegin;
3933264ace61SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
39349566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, method, &match));
39353ba16761SJacob Faibussowitsch   if (match) PetscFunctionReturn(PETSC_SUCCESS);
3936264ace61SBarry Smith 
39379566063dSJacob Faibussowitsch   PetscCall(DMRegisterAll());
39389566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListFind(DMList, method, &r));
39397a8be351SBarry Smith   PetscCheck(r, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown DM type: %s", method);
3940264ace61SBarry Smith 
3941dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, destroy);
39429566063dSJacob Faibussowitsch   PetscCall(PetscMemzero(dm->ops, sizeof(*dm->ops)));
39439566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)dm, method));
39449566063dSJacob Faibussowitsch   PetscCall((*r)(dm));
39453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3946264ace61SBarry Smith }
3947264ace61SBarry Smith 
3948cc4c1da9SBarry Smith /*@
3949bb7acecfSBarry Smith   DMGetType - Gets the `DM` type name (as a string) from the `DM`.
3950264ace61SBarry Smith 
3951264ace61SBarry Smith   Not Collective
3952264ace61SBarry Smith 
3953264ace61SBarry Smith   Input Parameter:
3954bb7acecfSBarry Smith . dm - The `DM`
3955264ace61SBarry Smith 
3956264ace61SBarry Smith   Output Parameter:
3957bb7acecfSBarry Smith . type - The `DMType` name
3958264ace61SBarry Smith 
3959264ace61SBarry Smith   Level: intermediate
3960264ace61SBarry Smith 
39611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMSetType()`, `DMCreate()`
3962264ace61SBarry Smith @*/
3963d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetType(DM dm, DMType *type)
3964d71ae5a4SJacob Faibussowitsch {
3965264ace61SBarry Smith   PetscFunctionBegin;
3966264ace61SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
39674f572ea9SToby Isaac   PetscAssertPointer(type, 2);
39689566063dSJacob Faibussowitsch   PetscCall(DMRegisterAll());
3969264ace61SBarry Smith   *type = ((PetscObject)dm)->type_name;
39703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3971264ace61SBarry Smith }
3972264ace61SBarry Smith 
39735d83a8b1SBarry Smith /*@
3974bb7acecfSBarry Smith   DMConvert - Converts a `DM` to another `DM`, either of the same or different type.
397567a56275SMatthew G Knepley 
397620f4b53cSBarry Smith   Collective
397767a56275SMatthew G Knepley 
397867a56275SMatthew G Knepley   Input Parameters:
3979bb7acecfSBarry Smith + dm      - the `DM`
3980bb7acecfSBarry Smith - newtype - new `DM` type (use "same" for the same type)
398167a56275SMatthew G Knepley 
398267a56275SMatthew G Knepley   Output Parameter:
3983bb7acecfSBarry Smith . M - pointer to new `DM`
398467a56275SMatthew G Knepley 
398520f4b53cSBarry Smith   Level: intermediate
398620f4b53cSBarry Smith 
398773ff1848SBarry Smith   Note:
3988bb7acecfSBarry Smith   Cannot be used to convert a sequential `DM` to a parallel or a parallel to sequential,
3989bb7acecfSBarry Smith   the MPI communicator of the generated `DM` is always the same as the communicator
3990bb7acecfSBarry Smith   of the input `DM`.
399167a56275SMatthew G Knepley 
39921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMCreate()`, `DMClone()`
399367a56275SMatthew G Knepley @*/
3994d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConvert(DM dm, DMType newtype, DM *M)
3995d71ae5a4SJacob Faibussowitsch {
399667a56275SMatthew G Knepley   DM        B;
399767a56275SMatthew G Knepley   char      convname[256];
3998c067b6caSMatthew G. Knepley   PetscBool sametype /*, issame */;
399967a56275SMatthew G Knepley 
400067a56275SMatthew G Knepley   PetscFunctionBegin;
400167a56275SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
400267a56275SMatthew G Knepley   PetscValidType(dm, 1);
40034f572ea9SToby Isaac   PetscAssertPointer(M, 3);
40049566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, newtype, &sametype));
40059566063dSJacob Faibussowitsch   /* PetscCall(PetscStrcmp(newtype, "same", &issame)); */
4006c067b6caSMatthew G. Knepley   if (sametype) {
4007c067b6caSMatthew G. Knepley     *M = dm;
40089566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
40093ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
4010c067b6caSMatthew G. Knepley   } else {
40110298fd71SBarry Smith     PetscErrorCode (*conv)(DM, DMType, DM *) = NULL;
401267a56275SMatthew G Knepley 
401367a56275SMatthew G Knepley     /*
401467a56275SMatthew G Knepley        Order of precedence:
401567a56275SMatthew G Knepley        1) See if a specialized converter is known to the current DM.
401667a56275SMatthew G Knepley        2) See if a specialized converter is known to the desired DM class.
401767a56275SMatthew G Knepley        3) See if a good general converter is registered for the desired class
401867a56275SMatthew G Knepley        4) See if a good general converter is known for the current matrix.
401967a56275SMatthew G Knepley        5) Use a really basic converter.
402067a56275SMatthew G Knepley     */
402167a56275SMatthew G Knepley 
402267a56275SMatthew G Knepley     /* 1) See if a specialized converter is known to the current DM and the desired class */
40239566063dSJacob Faibussowitsch     PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname)));
40249566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname)));
40259566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_", sizeof(convname)));
40269566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, newtype, sizeof(convname)));
40279566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_C", sizeof(convname)));
40289566063dSJacob Faibussowitsch     PetscCall(PetscObjectQueryFunction((PetscObject)dm, convname, &conv));
402967a56275SMatthew G Knepley     if (conv) goto foundconv;
403067a56275SMatthew G Knepley 
403167a56275SMatthew G Knepley     /* 2)  See if a specialized converter is known to the desired DM class. */
40329566063dSJacob Faibussowitsch     PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &B));
40339566063dSJacob Faibussowitsch     PetscCall(DMSetType(B, newtype));
40349566063dSJacob Faibussowitsch     PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname)));
40359566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname)));
40369566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_", sizeof(convname)));
40379566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, newtype, sizeof(convname)));
40389566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_C", sizeof(convname)));
40399566063dSJacob Faibussowitsch     PetscCall(PetscObjectQueryFunction((PetscObject)B, convname, &conv));
404067a56275SMatthew G Knepley     if (conv) {
40419566063dSJacob Faibussowitsch       PetscCall(DMDestroy(&B));
404267a56275SMatthew G Knepley       goto foundconv;
404367a56275SMatthew G Knepley     }
404467a56275SMatthew G Knepley 
404567a56275SMatthew G Knepley #if 0
404667a56275SMatthew G Knepley     /* 3) See if a good general converter is registered for the desired class */
404767a56275SMatthew G Knepley     conv = B->ops->convertfrom;
40489566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&B));
404967a56275SMatthew G Knepley     if (conv) goto foundconv;
405067a56275SMatthew G Knepley 
405167a56275SMatthew G Knepley     /* 4) See if a good general converter is known for the current matrix */
405267a56275SMatthew G Knepley     if (dm->ops->convert) {
405367a56275SMatthew G Knepley       conv = dm->ops->convert;
405467a56275SMatthew G Knepley     }
405567a56275SMatthew G Knepley     if (conv) goto foundconv;
405667a56275SMatthew G Knepley #endif
405767a56275SMatthew G Knepley 
405867a56275SMatthew G Knepley     /* 5) Use a really basic converter. */
405998921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No conversion possible between DM types %s and %s", ((PetscObject)dm)->type_name, newtype);
406067a56275SMatthew G Knepley 
406167a56275SMatthew G Knepley   foundconv:
40629566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(DM_Convert, dm, 0, 0, 0));
40639566063dSJacob Faibussowitsch     PetscCall((*conv)(dm, newtype, M));
406412fa691eSMatthew G. Knepley     /* Things that are independent of DM type: We should consult DMClone() here */
406590b157c4SStefano Zampini     {
40664fb89dddSMatthew G. Knepley       const PetscReal *maxCell, *Lstart, *L;
40676858538eSMatthew G. Knepley 
40684fb89dddSMatthew G. Knepley       PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
40694fb89dddSMatthew G. Knepley       PetscCall(DMSetPeriodicity(*M, maxCell, Lstart, L));
4070c8a6034eSMark       (*M)->prealloc_only = dm->prealloc_only;
40719566063dSJacob Faibussowitsch       PetscCall(PetscFree((*M)->vectype));
40729566063dSJacob Faibussowitsch       PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*M)->vectype));
40739566063dSJacob Faibussowitsch       PetscCall(PetscFree((*M)->mattype));
40749566063dSJacob Faibussowitsch       PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*M)->mattype));
407512fa691eSMatthew G. Knepley     }
40769566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(DM_Convert, dm, 0, 0, 0));
407767a56275SMatthew G Knepley   }
40789566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)*M));
40793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
408067a56275SMatthew G Knepley }
4081264ace61SBarry Smith 
4082264ace61SBarry Smith /*--------------------------------------------------------------------------------------------------------------------*/
4083264ace61SBarry Smith 
4084264ace61SBarry Smith /*@C
4085bb7acecfSBarry Smith   DMRegister -  Adds a new `DM` type implementation
40861c84c290SBarry Smith 
4087cc4c1da9SBarry Smith   Not Collective, No Fortran Support
40881c84c290SBarry Smith 
40891c84c290SBarry Smith   Input Parameters:
409020f4b53cSBarry Smith + sname    - The name of a new user-defined creation routine
409120f4b53cSBarry Smith - function - The creation routine itself
409220f4b53cSBarry Smith 
409320f4b53cSBarry Smith   Level: advanced
40941c84c290SBarry Smith 
409573ff1848SBarry Smith   Note:
409620f4b53cSBarry Smith   `DMRegister()` may be called multiple times to add several user-defined `DM`s
40971c84c290SBarry Smith 
409860225df5SJacob Faibussowitsch   Example Usage:
40991c84c290SBarry Smith .vb
4100bdf89e91SBarry Smith     DMRegister("my_da", MyDMCreate);
41011c84c290SBarry Smith .ve
41021c84c290SBarry Smith 
410320f4b53cSBarry Smith   Then, your `DM` type can be chosen with the procedural interface via
41041c84c290SBarry Smith .vb
41051c84c290SBarry Smith     DMCreate(MPI_Comm, DM *);
41061c84c290SBarry Smith     DMSetType(DM,"my_da");
41071c84c290SBarry Smith .ve
41081c84c290SBarry Smith   or at runtime via the option
41091c84c290SBarry Smith .vb
41101c84c290SBarry Smith     -da_type my_da
41111c84c290SBarry Smith .ve
4112264ace61SBarry Smith 
41131cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMSetType()`, `DMRegisterAll()`, `DMRegisterDestroy()`
4114264ace61SBarry Smith @*/
4115d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRegister(const char sname[], PetscErrorCode (*function)(DM))
4116d71ae5a4SJacob Faibussowitsch {
4117264ace61SBarry Smith   PetscFunctionBegin;
41189566063dSJacob Faibussowitsch   PetscCall(DMInitializePackage());
41199566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListAdd(&DMList, sname, function));
41203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4121264ace61SBarry Smith }
4122264ace61SBarry Smith 
4123ffeef943SBarry Smith /*@
4124bb7acecfSBarry Smith   DMLoad - Loads a DM that has been stored in binary  with `DMView()`.
4125b859378eSBarry Smith 
412620f4b53cSBarry Smith   Collective
4127b859378eSBarry Smith 
4128b859378eSBarry Smith   Input Parameters:
4129bb7acecfSBarry Smith + newdm  - the newly loaded `DM`, this needs to have been created with `DMCreate()` or
4130bb7acecfSBarry Smith            some related function before a call to `DMLoad()`.
4131bb7acecfSBarry Smith - viewer - binary file viewer, obtained from `PetscViewerBinaryOpen()` or
4132bb7acecfSBarry Smith            `PETSCVIEWERHDF5` file viewer, obtained from `PetscViewerHDF5Open()`
4133b859378eSBarry Smith 
4134b859378eSBarry Smith   Level: intermediate
4135b859378eSBarry Smith 
4136b859378eSBarry Smith   Notes:
413755849f57SBarry Smith   The type is determined by the data in the file, any type set into the DM before this call is ignored.
4138b859378eSBarry Smith 
4139bb7acecfSBarry Smith   Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` format, one can save multiple `DMPLEX`
4140bb7acecfSBarry Smith   meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()`
4141bb7acecfSBarry Smith   before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object.
4142cd7e8a5eSksagiyam 
41431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewerBinaryOpen()`, `DMView()`, `MatLoad()`, `VecLoad()`
4144b859378eSBarry Smith @*/
4145d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLoad(DM newdm, PetscViewer viewer)
4146d71ae5a4SJacob Faibussowitsch {
41479331c7a4SMatthew G. Knepley   PetscBool isbinary, ishdf5;
4148b859378eSBarry Smith 
4149b859378eSBarry Smith   PetscFunctionBegin;
4150b859378eSBarry Smith   PetscValidHeaderSpecific(newdm, DM_CLASSID, 1);
4151b859378eSBarry Smith   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
41529566063dSJacob Faibussowitsch   PetscCall(PetscViewerCheckReadable(viewer));
41539566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
41549566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
41559566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_Load, viewer, 0, 0, 0));
41569331c7a4SMatthew G. Knepley   if (isbinary) {
41579331c7a4SMatthew G. Knepley     PetscInt classid;
41589331c7a4SMatthew G. Knepley     char     type[256];
4159b859378eSBarry Smith 
41609566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryRead(viewer, &classid, 1, NULL, PETSC_INT));
41617a8be351SBarry Smith     PetscCheck(classid == DM_FILE_CLASSID, PetscObjectComm((PetscObject)newdm), PETSC_ERR_ARG_WRONG, "Not DM next in file, classid found %d", (int)classid);
41629566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryRead(viewer, type, 256, NULL, PETSC_CHAR));
41639566063dSJacob Faibussowitsch     PetscCall(DMSetType(newdm, type));
4164dbbe0bcdSBarry Smith     PetscTryTypeMethod(newdm, load, viewer);
41659331c7a4SMatthew G. Knepley   } else if (ishdf5) {
4166dbbe0bcdSBarry Smith     PetscTryTypeMethod(newdm, load, viewer);
41679331c7a4SMatthew G. Knepley   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerBinaryOpen() or PetscViewerHDF5Open()");
41689566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_Load, viewer, 0, 0, 0));
41693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4170b859378eSBarry Smith }
4171b859378eSBarry Smith 
41727da65231SMatthew G Knepley /******************************** FEM Support **********************************/
41737da65231SMatthew G Knepley 
41742ecf6ec3SMatthew G. Knepley PetscErrorCode DMPrintCellIndices(PetscInt c, const char name[], PetscInt len, const PetscInt x[])
41752ecf6ec3SMatthew G. Knepley {
41762ecf6ec3SMatthew G. Knepley   PetscInt f;
41772ecf6ec3SMatthew G. Knepley 
41782ecf6ec3SMatthew G. Knepley   PetscFunctionBegin;
41792ecf6ec3SMatthew G. Knepley   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
41802ecf6ec3SMatthew G. Knepley   for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  | %" PetscInt_FMT " |\n", x[f]));
41812ecf6ec3SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
41822ecf6ec3SMatthew G. Knepley }
41832ecf6ec3SMatthew G. Knepley 
4184d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellVector(PetscInt c, const char name[], PetscInt len, const PetscScalar x[])
4185d71ae5a4SJacob Faibussowitsch {
41861d47ebbbSSatish Balay   PetscInt f;
41871b30c384SMatthew G Knepley 
41887da65231SMatthew G Knepley   PetscFunctionBegin;
418963a3b9bcSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
419048a46eb9SPierre Jolivet   for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  | %g |\n", (double)PetscRealPart(x[f])));
41913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
41927da65231SMatthew G Knepley }
41937da65231SMatthew G Knepley 
41945962854dSMatthew G. Knepley PetscErrorCode DMPrintCellVectorReal(PetscInt c, const char name[], PetscInt len, const PetscReal x[])
41955962854dSMatthew G. Knepley {
41965962854dSMatthew G. Knepley   PetscInt f;
41975962854dSMatthew G. Knepley 
41985962854dSMatthew G. Knepley   PetscFunctionBegin;
41995962854dSMatthew G. Knepley   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
42005962854dSMatthew G. Knepley   for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  | %g |\n", (double)x[f]));
42015962854dSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
42025962854dSMatthew G. Knepley }
42035962854dSMatthew G. Knepley 
4204d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellMatrix(PetscInt c, const char name[], PetscInt rows, PetscInt cols, const PetscScalar A[])
4205d71ae5a4SJacob Faibussowitsch {
42061b30c384SMatthew G Knepley   PetscInt f, g;
42077da65231SMatthew G Knepley 
42087da65231SMatthew G Knepley   PetscFunctionBegin;
420963a3b9bcSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
42101d47ebbbSSatish Balay   for (f = 0; f < rows; ++f) {
42119566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PETSC_COMM_SELF, "  |"));
421248a46eb9SPierre Jolivet     for (g = 0; g < cols; ++g) PetscCall(PetscPrintf(PETSC_COMM_SELF, " % 9.5g", (double)PetscRealPart(A[f * cols + g])));
42139566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PETSC_COMM_SELF, " |\n"));
42147da65231SMatthew G Knepley   }
42153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42167da65231SMatthew G Knepley }
4217e7c4fc90SDmitry Karpeev 
4218d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintLocalVec(DM dm, const char name[], PetscReal tol, Vec X)
4219d71ae5a4SJacob Faibussowitsch {
42200c5b8624SToby Isaac   PetscInt           localSize, bs;
42210c5b8624SToby Isaac   PetscMPIInt        size;
42220c5b8624SToby Isaac   Vec                x, xglob;
42230c5b8624SToby Isaac   const PetscScalar *xarray;
4224e759306cSMatthew G. Knepley 
4225e759306cSMatthew G. Knepley   PetscFunctionBegin;
42269566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
42279566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(X, &x));
42289566063dSJacob Faibussowitsch   PetscCall(VecCopy(X, x));
422993ec0da9SPierre Jolivet   PetscCall(VecFilter(x, tol));
42309566063dSJacob Faibussowitsch   PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "%s:\n", name));
42310c5b8624SToby Isaac   if (size > 1) {
42329566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(x, &localSize));
42339566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xarray));
42349566063dSJacob Faibussowitsch     PetscCall(VecGetBlockSize(x, &bs));
42359566063dSJacob Faibussowitsch     PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)dm), bs, localSize, PETSC_DETERMINE, xarray, &xglob));
42360c5b8624SToby Isaac   } else {
42370c5b8624SToby Isaac     xglob = x;
42380c5b8624SToby Isaac   }
42399566063dSJacob Faibussowitsch   PetscCall(VecView(xglob, PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)dm))));
42400c5b8624SToby Isaac   if (size > 1) {
42419566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xglob));
42429566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xarray));
42430c5b8624SToby Isaac   }
42449566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
42453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4246e759306cSMatthew G. Knepley }
4247e759306cSMatthew G. Knepley 
424888ed4aceSMatthew G Knepley /*@
4249bb7acecfSBarry Smith   DMGetSection - Get the `PetscSection` encoding the local data layout for the `DM`.   This is equivalent to `DMGetLocalSection()`. Deprecated in v3.12
4250061576a5SJed Brown 
4251061576a5SJed Brown   Input Parameter:
4252bb7acecfSBarry Smith . dm - The `DM`
4253061576a5SJed Brown 
4254061576a5SJed Brown   Output Parameter:
4255bb7acecfSBarry Smith . section - The `PetscSection`
4256061576a5SJed Brown 
425720f4b53cSBarry Smith   Options Database Key:
4258bb7acecfSBarry Smith . -dm_petscsection_view - View the `PetscSection` created by the `DM`
4259061576a5SJed Brown 
4260061576a5SJed Brown   Level: advanced
4261061576a5SJed Brown 
4262061576a5SJed Brown   Notes:
4263bb7acecfSBarry Smith   Use `DMGetLocalSection()` in new code.
4264061576a5SJed Brown 
4265bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
4266061576a5SJed Brown 
42671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetLocalSection()`, `DMSetLocalSection()`, `DMGetGlobalSection()`
4268061576a5SJed Brown @*/
4269d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSection(DM dm, PetscSection *section)
4270d71ae5a4SJacob Faibussowitsch {
4271061576a5SJed Brown   PetscFunctionBegin;
42729566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, section));
42733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4274061576a5SJed Brown }
4275061576a5SJed Brown 
4276061576a5SJed Brown /*@
4277bb7acecfSBarry Smith   DMGetLocalSection - Get the `PetscSection` encoding the local data layout for the `DM`.
427888ed4aceSMatthew G Knepley 
427988ed4aceSMatthew G Knepley   Input Parameter:
4280bb7acecfSBarry Smith . dm - The `DM`
428188ed4aceSMatthew G Knepley 
428288ed4aceSMatthew G Knepley   Output Parameter:
4283bb7acecfSBarry Smith . section - The `PetscSection`
428488ed4aceSMatthew G Knepley 
428520f4b53cSBarry Smith   Options Database Key:
4286bb7acecfSBarry Smith . -dm_petscsection_view - View the section created by the `DM`
4287e5893cccSMatthew G. Knepley 
428888ed4aceSMatthew G Knepley   Level: intermediate
428988ed4aceSMatthew G Knepley 
4290bb7acecfSBarry Smith   Note:
4291bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
429288ed4aceSMatthew G Knepley 
42931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetGlobalSection()`
429488ed4aceSMatthew G Knepley @*/
4295d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalSection(DM dm, PetscSection *section)
4296d71ae5a4SJacob Faibussowitsch {
429788ed4aceSMatthew G Knepley   PetscFunctionBegin;
429888ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
42994f572ea9SToby Isaac   PetscAssertPointer(section, 2);
43001bb6d2a8SBarry Smith   if (!dm->localSection && dm->ops->createlocalsection) {
4301e5e52638SMatthew G. Knepley     PetscInt d;
4302e5e52638SMatthew G. Knepley 
430345480ffeSMatthew G. Knepley     if (dm->setfromoptionscalled) {
430445480ffeSMatthew G. Knepley       PetscObject       obj = (PetscObject)dm;
430545480ffeSMatthew G. Knepley       PetscViewer       viewer;
430645480ffeSMatthew G. Knepley       PetscViewerFormat format;
430745480ffeSMatthew G. Knepley       PetscBool         flg;
430845480ffeSMatthew G. Knepley 
4309648c30bcSBarry Smith       PetscCall(PetscOptionsCreateViewer(PetscObjectComm(obj), obj->options, obj->prefix, "-dm_petscds_view", &viewer, &format, &flg));
43109566063dSJacob Faibussowitsch       if (flg) PetscCall(PetscViewerPushFormat(viewer, format));
431145480ffeSMatthew G. Knepley       for (d = 0; d < dm->Nds; ++d) {
43129566063dSJacob Faibussowitsch         PetscCall(PetscDSSetFromOptions(dm->probs[d].ds));
43139566063dSJacob Faibussowitsch         if (flg) PetscCall(PetscDSView(dm->probs[d].ds, viewer));
431445480ffeSMatthew G. Knepley       }
431545480ffeSMatthew G. Knepley       if (flg) {
43169566063dSJacob Faibussowitsch         PetscCall(PetscViewerFlush(viewer));
43179566063dSJacob Faibussowitsch         PetscCall(PetscViewerPopFormat(viewer));
4318648c30bcSBarry Smith         PetscCall(PetscViewerDestroy(&viewer));
431945480ffeSMatthew G. Knepley       }
432045480ffeSMatthew G. Knepley     }
4321dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm, createlocalsection);
43229566063dSJacob Faibussowitsch     if (dm->localSection) PetscCall(PetscObjectViewFromOptions((PetscObject)dm->localSection, NULL, "-dm_petscsection_view"));
43232f0f8703SMatthew G. Knepley   }
43241bb6d2a8SBarry Smith   *section = dm->localSection;
43253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
432688ed4aceSMatthew G Knepley }
432788ed4aceSMatthew G Knepley 
432888ed4aceSMatthew G Knepley /*@
4329bb7acecfSBarry Smith   DMSetSection - Set the `PetscSection` encoding the local data layout for the `DM`.  This is equivalent to `DMSetLocalSection()`. Deprecated in v3.12
4330061576a5SJed Brown 
4331061576a5SJed Brown   Input Parameters:
4332bb7acecfSBarry Smith + dm      - The `DM`
4333bb7acecfSBarry Smith - section - The `PetscSection`
4334061576a5SJed Brown 
4335061576a5SJed Brown   Level: advanced
4336061576a5SJed Brown 
4337061576a5SJed Brown   Notes:
4338bb7acecfSBarry Smith   Use `DMSetLocalSection()` in new code.
4339061576a5SJed Brown 
4340bb7acecfSBarry Smith   Any existing `PetscSection` will be destroyed
4341061576a5SJed Brown 
43421cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()`, `DMSetGlobalSection()`
4343061576a5SJed Brown @*/
4344d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSection(DM dm, PetscSection section)
4345d71ae5a4SJacob Faibussowitsch {
4346061576a5SJed Brown   PetscFunctionBegin;
43479566063dSJacob Faibussowitsch   PetscCall(DMSetLocalSection(dm, section));
43483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4349061576a5SJed Brown }
4350061576a5SJed Brown 
4351061576a5SJed Brown /*@
4352bb7acecfSBarry Smith   DMSetLocalSection - Set the `PetscSection` encoding the local data layout for the `DM`.
435388ed4aceSMatthew G Knepley 
435488ed4aceSMatthew G Knepley   Input Parameters:
4355bb7acecfSBarry Smith + dm      - The `DM`
4356bb7acecfSBarry Smith - section - The `PetscSection`
435788ed4aceSMatthew G Knepley 
435888ed4aceSMatthew G Knepley   Level: intermediate
435988ed4aceSMatthew G Knepley 
4360bb7acecfSBarry Smith   Note:
4361bb7acecfSBarry Smith   Any existing Section will be destroyed
436288ed4aceSMatthew G Knepley 
43631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMSetGlobalSection()`
436488ed4aceSMatthew G Knepley @*/
4365d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLocalSection(DM dm, PetscSection section)
4366d71ae5a4SJacob Faibussowitsch {
4367c473ab19SMatthew G. Knepley   PetscInt numFields = 0;
4368af122d2aSMatthew G Knepley   PetscInt f;
436988ed4aceSMatthew G Knepley 
437088ed4aceSMatthew G Knepley   PetscFunctionBegin;
437188ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4372b9d85ea2SLisandro Dalcin   if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
43739566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)section));
43749566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->localSection));
43751bb6d2a8SBarry Smith   dm->localSection = section;
43769566063dSJacob Faibussowitsch   if (section) PetscCall(PetscSectionGetNumFields(dm->localSection, &numFields));
4377af122d2aSMatthew G Knepley   if (numFields) {
43789566063dSJacob Faibussowitsch     PetscCall(DMSetNumFields(dm, numFields));
4379af122d2aSMatthew G Knepley     for (f = 0; f < numFields; ++f) {
43800f21e855SMatthew G. Knepley       PetscObject disc;
4381af122d2aSMatthew G Knepley       const char *name;
4382af122d2aSMatthew G Knepley 
43839566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldName(dm->localSection, f, &name));
43849566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, f, NULL, &disc));
43859566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName(disc, name));
4386af122d2aSMatthew G Knepley     }
4387af122d2aSMatthew G Knepley   }
438850350c8eSStefano Zampini   /* The global section and the SectionSF will be rebuilt
438950350c8eSStefano Zampini      in the next call to DMGetGlobalSection() and DMGetSectionSF(). */
43909566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->globalSection));
439150350c8eSStefano Zampini   PetscCall(PetscSFDestroy(&dm->sectionSF));
439252947b74SStefano Zampini   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF));
439350350c8eSStefano Zampini 
439450350c8eSStefano Zampini   /* Clear scratch vectors */
439550350c8eSStefano Zampini   PetscCall(DMClearGlobalVectors(dm));
439650350c8eSStefano Zampini   PetscCall(DMClearLocalVectors(dm));
439750350c8eSStefano Zampini   PetscCall(DMClearNamedGlobalVectors(dm));
439850350c8eSStefano Zampini   PetscCall(DMClearNamedLocalVectors(dm));
43993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
440088ed4aceSMatthew G Knepley }
440188ed4aceSMatthew G Knepley 
4402adc21957SMatthew G. Knepley /*@C
4403d8b4a066SPierre Jolivet   DMCreateSectionPermutation - Create a permutation of the `PetscSection` chart and optionally a block structure.
4404adc21957SMatthew G. Knepley 
4405adc21957SMatthew G. Knepley   Input Parameter:
4406adc21957SMatthew G. Knepley . dm - The `DM`
4407adc21957SMatthew G. Knepley 
44089cde84edSJose E. Roman   Output Parameters:
4409adc21957SMatthew G. Knepley + perm        - A permutation of the mesh points in the chart
4410b6971eaeSBarry Smith - blockStarts - A high bit is set for the point that begins every block, or `NULL` for default blocking
4411adc21957SMatthew G. Knepley 
4412adc21957SMatthew G. Knepley   Level: developer
4413adc21957SMatthew G. Knepley 
4414adc21957SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMGetGlobalSection()`
4415adc21957SMatthew G. Knepley @*/
4416adc21957SMatthew G. Knepley PetscErrorCode DMCreateSectionPermutation(DM dm, IS *perm, PetscBT *blockStarts)
4417adc21957SMatthew G. Knepley {
4418adc21957SMatthew G. Knepley   PetscFunctionBegin;
4419adc21957SMatthew G. Knepley   *perm        = NULL;
4420adc21957SMatthew G. Knepley   *blockStarts = NULL;
4421adc21957SMatthew G. Knepley   PetscTryTypeMethod(dm, createsectionpermutation, perm, blockStarts);
4422adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
4423adc21957SMatthew G. Knepley }
4424adc21957SMatthew G. Knepley 
44259435951eSToby Isaac /*@
4426bb7acecfSBarry Smith   DMGetDefaultConstraints - Get the `PetscSection` and `Mat` that specify the local constraint interpolation. See `DMSetDefaultConstraints()` for a description of the purpose of constraint interpolation.
44279435951eSToby Isaac 
442820f4b53cSBarry Smith   not Collective
4429e228b242SToby Isaac 
44309435951eSToby Isaac   Input Parameter:
4431bb7acecfSBarry Smith . dm - The `DM`
44329435951eSToby Isaac 
4433d8d19677SJose E. Roman   Output Parameters:
443420f4b53cSBarry Smith + section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section.  Returns `NULL` if there are no local constraints.
443520f4b53cSBarry Smith . mat     - The `Mat` that interpolates local constraints: its width should be the layout size of the default section.  Returns `NULL` if there are no local constraints.
443679769bd5SJed Brown - bias    - Vector containing bias to be added to constrained dofs
44379435951eSToby Isaac 
44389435951eSToby Isaac   Level: advanced
44399435951eSToby Isaac 
4440bb7acecfSBarry Smith   Note:
4441bb7acecfSBarry Smith   This gets borrowed references, so the user should not destroy the `PetscSection`, `Mat`, or `Vec`.
44429435951eSToby Isaac 
44431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDefaultConstraints()`
44449435951eSToby Isaac @*/
4445d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDefaultConstraints(DM dm, PetscSection *section, Mat *mat, Vec *bias)
4446d71ae5a4SJacob Faibussowitsch {
44479435951eSToby Isaac   PetscFunctionBegin;
44489435951eSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4449dbbe0bcdSBarry Smith   if (!dm->defaultConstraint.section && !dm->defaultConstraint.mat && dm->ops->createdefaultconstraints) PetscUseTypeMethod(dm, createdefaultconstraints);
44503b8ba7d1SJed Brown   if (section) *section = dm->defaultConstraint.section;
44513b8ba7d1SJed Brown   if (mat) *mat = dm->defaultConstraint.mat;
445279769bd5SJed Brown   if (bias) *bias = dm->defaultConstraint.bias;
44533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
44549435951eSToby Isaac }
44559435951eSToby Isaac 
44569435951eSToby Isaac /*@
4457bb7acecfSBarry Smith   DMSetDefaultConstraints - Set the `PetscSection` and `Mat` that specify the local constraint interpolation.
44589435951eSToby Isaac 
445920f4b53cSBarry Smith   Collective
4460e228b242SToby Isaac 
44619435951eSToby Isaac   Input Parameters:
4462bb7acecfSBarry Smith + dm      - The `DM`
4463bb7acecfSBarry Smith . section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
446420f4b53cSBarry Smith . mat     - The `Mat` that interpolates local constraints: its width should be the layout size of the default section:  `NULL` indicates no constraints.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
446520f4b53cSBarry Smith - bias    - A bias vector to be added to constrained values in the local vector.  `NULL` indicates no bias.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
44669435951eSToby Isaac 
44679435951eSToby Isaac   Level: advanced
44689435951eSToby Isaac 
446920f4b53cSBarry Smith   Notes:
447020f4b53cSBarry Smith   If a constraint matrix is specified, then it is applied during `DMGlobalToLocalEnd()` when mode is `INSERT_VALUES`, `INSERT_BC_VALUES`, or `INSERT_ALL_VALUES`.  Without a constraint matrix, the local vector l returned by `DMGlobalToLocalEnd()` contains values that have been scattered from a global vector without modification; with a constraint matrix A, l is modified by computing c = A * l + bias, l[s[i]] = c[i], where the scatter s is defined by the `PetscSection` returned by `DMGetDefaultConstraints()`.
447120f4b53cSBarry Smith 
447220f4b53cSBarry Smith   If a constraint matrix is specified, then its adjoint is applied during `DMLocalToGlobalBegin()` when mode is `ADD_VALUES`, `ADD_BC_VALUES`, or `ADD_ALL_VALUES`.  Without a constraint matrix, the local vector l is accumulated into a global vector without modification; with a constraint matrix A, l is first modified by computing c[i] = l[s[i]], l[s[i]] = 0, l = l + A'*c, which is the adjoint of the operation described above.  Any bias, if specified, is ignored when accumulating.
447320f4b53cSBarry Smith 
4474bb7acecfSBarry Smith   This increments the references of the `PetscSection`, `Mat`, and `Vec`, so they user can destroy them.
44759435951eSToby Isaac 
44761cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDefaultConstraints()`
44779435951eSToby Isaac @*/
4478d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDefaultConstraints(DM dm, PetscSection section, Mat mat, Vec bias)
4479d71ae5a4SJacob Faibussowitsch {
4480e228b242SToby Isaac   PetscMPIInt result;
44819435951eSToby Isaac 
44829435951eSToby Isaac   PetscFunctionBegin;
44839435951eSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4484e228b242SToby Isaac   if (section) {
4485e228b242SToby Isaac     PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
44869566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)section), &result));
44877a8be351SBarry Smith     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint section must have local communicator");
4488e228b242SToby Isaac   }
4489e228b242SToby Isaac   if (mat) {
4490e228b242SToby Isaac     PetscValidHeaderSpecific(mat, MAT_CLASSID, 3);
44919566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)mat), &result));
44927a8be351SBarry Smith     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint matrix must have local communicator");
4493e228b242SToby Isaac   }
449479769bd5SJed Brown   if (bias) {
449579769bd5SJed Brown     PetscValidHeaderSpecific(bias, VEC_CLASSID, 4);
44969566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)bias), &result));
449779769bd5SJed Brown     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint bias must have local communicator");
449879769bd5SJed Brown   }
44999566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)section));
45009566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->defaultConstraint.section));
45013b8ba7d1SJed Brown   dm->defaultConstraint.section = section;
45029566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)mat));
45039566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&dm->defaultConstraint.mat));
45043b8ba7d1SJed Brown   dm->defaultConstraint.mat = mat;
45059566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)bias));
45069566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&dm->defaultConstraint.bias));
450779769bd5SJed Brown   dm->defaultConstraint.bias = bias;
45083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
45099435951eSToby Isaac }
45109435951eSToby Isaac 
4511497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG)
4512507e4973SMatthew G. Knepley /*
4513bb7acecfSBarry Smith   DMDefaultSectionCheckConsistency - Check the consistentcy of the global and local sections. Generates and error if they are not consistent.
4514507e4973SMatthew G. Knepley 
4515507e4973SMatthew G. Knepley   Input Parameters:
4516bb7acecfSBarry Smith + dm - The `DM`
4517bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout
4518bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout
4519507e4973SMatthew G. Knepley 
4520507e4973SMatthew G. Knepley   Level: intermediate
4521507e4973SMatthew G. Knepley 
45221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`
4523507e4973SMatthew G. Knepley */
4524d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(DM dm, PetscSection localSection, PetscSection globalSection)
4525d71ae5a4SJacob Faibussowitsch {
4526507e4973SMatthew G. Knepley   MPI_Comm        comm;
4527507e4973SMatthew G. Knepley   PetscLayout     layout;
4528507e4973SMatthew G. Knepley   const PetscInt *ranges;
4529507e4973SMatthew G. Knepley   PetscInt        pStart, pEnd, p, nroots;
4530507e4973SMatthew G. Knepley   PetscMPIInt     size, rank;
4531507e4973SMatthew G. Knepley   PetscBool       valid = PETSC_TRUE, gvalid;
4532507e4973SMatthew G. Knepley 
4533507e4973SMatthew G. Knepley   PetscFunctionBegin;
45349566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
4535507e4973SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
45369566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
45379566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
45389566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(globalSection, &pStart, &pEnd));
45399566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &nroots));
45409566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &layout));
45419566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(layout, 1));
45429566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(layout, nroots));
45439566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(layout));
45449566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(layout, &ranges));
4545507e4973SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
4546f741bcd2SMatthew G. Knepley     PetscInt dof, cdof, off, gdof, gcdof, goff, gsize, d;
4547507e4973SMatthew G. Knepley 
45489566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(localSection, p, &dof));
45499566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(localSection, p, &off));
45509566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetConstraintDof(localSection, p, &cdof));
45519566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(globalSection, p, &gdof));
45529566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetConstraintDof(globalSection, p, &gcdof));
45539566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(globalSection, p, &goff));
4554507e4973SMatthew G. Knepley     if (!gdof) continue; /* Censored point */
45559371c9d4SSatish Balay     if ((gdof < 0 ? -(gdof + 1) : gdof) != dof) {
45569371c9d4SSatish Balay       PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local dof %" PetscInt_FMT "\n", rank, gdof, p, dof));
45579371c9d4SSatish Balay       valid = PETSC_FALSE;
45589371c9d4SSatish Balay     }
45599371c9d4SSatish Balay     if (gcdof && (gcdof != cdof)) {
45609371c9d4SSatish Balay       PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global constraints %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local constraints %" PetscInt_FMT "\n", rank, gcdof, p, cdof));
45619371c9d4SSatish Balay       valid = PETSC_FALSE;
45629371c9d4SSatish Balay     }
4563507e4973SMatthew G. Knepley     if (gdof < 0) {
4564507e4973SMatthew G. Knepley       gsize = gdof < 0 ? -(gdof + 1) - gcdof : gdof - gcdof;
4565507e4973SMatthew G. Knepley       for (d = 0; d < gsize; ++d) {
4566507e4973SMatthew G. Knepley         PetscInt offset = -(goff + 1) + d, r;
4567507e4973SMatthew G. Knepley 
45689566063dSJacob Faibussowitsch         PetscCall(PetscFindInt(offset, size + 1, ranges, &r));
4569507e4973SMatthew G. Knepley         if (r < 0) r = -(r + 2);
45709371c9d4SSatish Balay         if ((r < 0) || (r >= size)) {
45719371c9d4SSatish Balay           PetscCall(PetscSynchronizedPrintf(comm, "[%d]Point %" PetscInt_FMT " mapped to invalid process %" PetscInt_FMT " (%" PetscInt_FMT ", %" PetscInt_FMT ")\n", rank, p, r, gdof, goff));
45729371c9d4SSatish Balay           valid = PETSC_FALSE;
45739371c9d4SSatish Balay           break;
45749371c9d4SSatish Balay         }
4575507e4973SMatthew G. Knepley       }
4576507e4973SMatthew G. Knepley     }
4577507e4973SMatthew G. Knepley   }
45789566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&layout));
45799566063dSJacob Faibussowitsch   PetscCall(PetscSynchronizedFlush(comm, NULL));
45801c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&valid, &gvalid, 1, MPIU_BOOL, MPI_LAND, comm));
4581507e4973SMatthew G. Knepley   if (!gvalid) {
45829566063dSJacob Faibussowitsch     PetscCall(DMView(dm, NULL));
4583507e4973SMatthew G. Knepley     SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Inconsistent local and global sections");
4584507e4973SMatthew G. Knepley   }
45853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4586507e4973SMatthew G. Knepley }
4587f741bcd2SMatthew G. Knepley #endif
4588507e4973SMatthew G. Knepley 
45895f06a3ddSJed Brown static PetscErrorCode DMGetIsoperiodicPointSF_Internal(DM dm, PetscSF *sf)
45906725e60dSJed Brown {
45916725e60dSJed Brown   PetscErrorCode (*f)(DM, PetscSF *);
45924d86920dSPierre Jolivet 
45936725e60dSJed Brown   PetscFunctionBegin;
45946725e60dSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
45954f572ea9SToby Isaac   PetscAssertPointer(sf, 2);
45965f06a3ddSJed Brown   PetscCall(PetscObjectQueryFunction((PetscObject)dm, "DMGetIsoperiodicPointSF_C", &f));
45976725e60dSJed Brown   if (f) PetscCall(f(dm, sf));
45986725e60dSJed Brown   else *sf = dm->sf;
45993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
46006725e60dSJed Brown }
46016725e60dSJed Brown 
460288ed4aceSMatthew G Knepley /*@
4603bb7acecfSBarry Smith   DMGetGlobalSection - Get the `PetscSection` encoding the global data layout for the `DM`.
460488ed4aceSMatthew G Knepley 
460520f4b53cSBarry Smith   Collective
46068b1ab98fSJed Brown 
460788ed4aceSMatthew G Knepley   Input Parameter:
4608bb7acecfSBarry Smith . dm - The `DM`
460988ed4aceSMatthew G Knepley 
461088ed4aceSMatthew G Knepley   Output Parameter:
4611bb7acecfSBarry Smith . section - The `PetscSection`
461288ed4aceSMatthew G Knepley 
461388ed4aceSMatthew G Knepley   Level: intermediate
461488ed4aceSMatthew G Knepley 
4615bb7acecfSBarry Smith   Note:
4616bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
461788ed4aceSMatthew G Knepley 
46181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()`
461988ed4aceSMatthew G Knepley @*/
4620d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetGlobalSection(DM dm, PetscSection *section)
4621d71ae5a4SJacob Faibussowitsch {
462288ed4aceSMatthew G Knepley   PetscFunctionBegin;
462388ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
46244f572ea9SToby Isaac   PetscAssertPointer(section, 2);
46251bb6d2a8SBarry Smith   if (!dm->globalSection) {
4626fd59a867SMatthew G. Knepley     PetscSection s;
46276725e60dSJed Brown     PetscSF      sf;
4628fd59a867SMatthew G. Knepley 
46299566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &s));
46307a8be351SBarry Smith     PetscCheck(s, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a default PetscSection in order to create a global PetscSection");
46317a8be351SBarry Smith     PetscCheck(dm->sf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a point PetscSF in order to create a global PetscSection");
46325f06a3ddSJed Brown     PetscCall(DMGetIsoperiodicPointSF_Internal(dm, &sf));
4633eb9d3e4dSMatthew G. Knepley     PetscCall(PetscSectionCreateGlobalSection(s, sf, PETSC_TRUE, PETSC_FALSE, PETSC_FALSE, &dm->globalSection));
46349566063dSJacob Faibussowitsch     PetscCall(PetscLayoutDestroy(&dm->map));
46359566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetValueLayout(PetscObjectComm((PetscObject)dm), dm->globalSection, &dm->map));
46369566063dSJacob Faibussowitsch     PetscCall(PetscSectionViewFromOptions(dm->globalSection, NULL, "-global_section_view"));
463788ed4aceSMatthew G Knepley   }
46381bb6d2a8SBarry Smith   *section = dm->globalSection;
46393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
464088ed4aceSMatthew G Knepley }
464188ed4aceSMatthew G Knepley 
4642b21d0597SMatthew G Knepley /*@
4643bb7acecfSBarry Smith   DMSetGlobalSection - Set the `PetscSection` encoding the global data layout for the `DM`.
4644b21d0597SMatthew G Knepley 
4645b21d0597SMatthew G Knepley   Input Parameters:
4646bb7acecfSBarry Smith + dm      - The `DM`
46472fe279fdSBarry Smith - section - The PetscSection, or `NULL`
4648b21d0597SMatthew G Knepley 
4649b21d0597SMatthew G Knepley   Level: intermediate
4650b21d0597SMatthew G Knepley 
4651bb7acecfSBarry Smith   Note:
4652bb7acecfSBarry Smith   Any existing `PetscSection` will be destroyed
4653b21d0597SMatthew G Knepley 
46541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetGlobalSection()`, `DMSetLocalSection()`
4655b21d0597SMatthew G Knepley @*/
4656d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetGlobalSection(DM dm, PetscSection section)
4657d71ae5a4SJacob Faibussowitsch {
4658b21d0597SMatthew G Knepley   PetscFunctionBegin;
4659b21d0597SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
46605080bbdbSMatthew G Knepley   if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
46619566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)section));
46629566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->globalSection));
46631bb6d2a8SBarry Smith   dm->globalSection = section;
4664497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG)
46659566063dSJacob Faibussowitsch   if (section) PetscCall(DMDefaultSectionCheckConsistency_Internal(dm, dm->localSection, section));
4666507e4973SMatthew G. Knepley #endif
466750350c8eSStefano Zampini   /* Clear global scratch vectors and sectionSF */
466850350c8eSStefano Zampini   PetscCall(PetscSFDestroy(&dm->sectionSF));
466952947b74SStefano Zampini   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF));
467050350c8eSStefano Zampini   PetscCall(DMClearGlobalVectors(dm));
467150350c8eSStefano Zampini   PetscCall(DMClearNamedGlobalVectors(dm));
46723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4673b21d0597SMatthew G Knepley }
4674b21d0597SMatthew G Knepley 
467588ed4aceSMatthew G Knepley /*@
4676bb7acecfSBarry Smith   DMGetSectionSF - Get the `PetscSF` encoding the parallel dof overlap for the `DM`. If it has not been set,
4677bb7acecfSBarry Smith   it is created from the default `PetscSection` layouts in the `DM`.
467888ed4aceSMatthew G Knepley 
467988ed4aceSMatthew G Knepley   Input Parameter:
4680bb7acecfSBarry Smith . dm - The `DM`
468188ed4aceSMatthew G Knepley 
468288ed4aceSMatthew G Knepley   Output Parameter:
4683bb7acecfSBarry Smith . sf - The `PetscSF`
468488ed4aceSMatthew G Knepley 
468588ed4aceSMatthew G Knepley   Level: intermediate
468688ed4aceSMatthew G Knepley 
4687bb7acecfSBarry Smith   Note:
4688bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
468988ed4aceSMatthew G Knepley 
46901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetSectionSF()`, `DMCreateSectionSF()`
469188ed4aceSMatthew G Knepley @*/
4692d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSectionSF(DM dm, PetscSF *sf)
4693d71ae5a4SJacob Faibussowitsch {
469488ed4aceSMatthew G Knepley   PetscInt nroots;
469588ed4aceSMatthew G Knepley 
469688ed4aceSMatthew G Knepley   PetscFunctionBegin;
469788ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
46984f572ea9SToby Isaac   PetscAssertPointer(sf, 2);
469948a46eb9SPierre Jolivet   if (!dm->sectionSF) PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF));
47009566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(dm->sectionSF, &nroots, NULL, NULL, NULL));
470188ed4aceSMatthew G Knepley   if (nroots < 0) {
470288ed4aceSMatthew G Knepley     PetscSection section, gSection;
470388ed4aceSMatthew G Knepley 
47049566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
470531ea6d37SMatthew G Knepley     if (section) {
47069566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalSection(dm, &gSection));
47079566063dSJacob Faibussowitsch       PetscCall(DMCreateSectionSF(dm, section, gSection));
470831ea6d37SMatthew G Knepley     } else {
47090298fd71SBarry Smith       *sf = NULL;
47103ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
471131ea6d37SMatthew G Knepley     }
471288ed4aceSMatthew G Knepley   }
47131bb6d2a8SBarry Smith   *sf = dm->sectionSF;
47143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
471588ed4aceSMatthew G Knepley }
471688ed4aceSMatthew G Knepley 
471788ed4aceSMatthew G Knepley /*@
4718bb7acecfSBarry Smith   DMSetSectionSF - Set the `PetscSF` encoding the parallel dof overlap for the `DM`
471988ed4aceSMatthew G Knepley 
472088ed4aceSMatthew G Knepley   Input Parameters:
4721bb7acecfSBarry Smith + dm - The `DM`
4722bb7acecfSBarry Smith - sf - The `PetscSF`
472388ed4aceSMatthew G Knepley 
472488ed4aceSMatthew G Knepley   Level: intermediate
472588ed4aceSMatthew G Knepley 
4726bb7acecfSBarry Smith   Note:
4727bb7acecfSBarry Smith   Any previous `PetscSF` is destroyed
472888ed4aceSMatthew G Knepley 
47291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMCreateSectionSF()`
473088ed4aceSMatthew G Knepley @*/
4731d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSectionSF(DM dm, PetscSF sf)
4732d71ae5a4SJacob Faibussowitsch {
473388ed4aceSMatthew G Knepley   PetscFunctionBegin;
473488ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4735b9d85ea2SLisandro Dalcin   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
47369566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)sf));
47379566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&dm->sectionSF));
47381bb6d2a8SBarry Smith   dm->sectionSF = sf;
47393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
474088ed4aceSMatthew G Knepley }
474188ed4aceSMatthew G Knepley 
4742cc4c1da9SBarry Smith /*@
4743bb7acecfSBarry Smith   DMCreateSectionSF - Create the `PetscSF` encoding the parallel dof overlap for the `DM` based upon the `PetscSection`s
474488ed4aceSMatthew G Knepley   describing the data layout.
474588ed4aceSMatthew G Knepley 
474688ed4aceSMatthew G Knepley   Input Parameters:
4747bb7acecfSBarry Smith + dm            - The `DM`
4748bb7acecfSBarry Smith . localSection  - `PetscSection` describing the local data layout
4749bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout
475088ed4aceSMatthew G Knepley 
47511bb6d2a8SBarry Smith   Level: developer
47521bb6d2a8SBarry Smith 
4753bb7acecfSBarry Smith   Note:
4754bb7acecfSBarry Smith   One usually uses `DMGetSectionSF()` to obtain the `PetscSF`
4755bb7acecfSBarry Smith 
475673ff1848SBarry Smith   Developer Note:
4757bb7acecfSBarry Smith   Since this routine has for arguments the two sections from the `DM` and puts the resulting `PetscSF`
4758bb7acecfSBarry Smith   directly into the `DM`, perhaps this function should not take the local and global sections as
4759b6971eaeSBarry Smith   input and should just obtain them from the `DM`? Plus PETSc creation functions return the thing
4760b6971eaeSBarry Smith   they create, this returns nothing
47611bb6d2a8SBarry Smith 
47621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMGetLocalSection()`, `DMGetGlobalSection()`
476388ed4aceSMatthew G Knepley @*/
4764d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSectionSF(DM dm, PetscSection localSection, PetscSection globalSection)
4765d71ae5a4SJacob Faibussowitsch {
476688ed4aceSMatthew G Knepley   PetscFunctionBegin;
476788ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
47689566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphSection(dm->sectionSF, localSection, globalSection));
47693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
477088ed4aceSMatthew G Knepley }
4771af122d2aSMatthew G Knepley 
4772b21d0597SMatthew G Knepley /*@
4773bb7acecfSBarry Smith   DMGetPointSF - Get the `PetscSF` encoding the parallel section point overlap for the `DM`.
4774bb7acecfSBarry Smith 
4775bb7acecfSBarry Smith   Not collective but the resulting `PetscSF` is collective
4776b21d0597SMatthew G Knepley 
4777b21d0597SMatthew G Knepley   Input Parameter:
4778bb7acecfSBarry Smith . dm - The `DM`
4779b21d0597SMatthew G Knepley 
4780b21d0597SMatthew G Knepley   Output Parameter:
4781bb7acecfSBarry Smith . sf - The `PetscSF`
4782b21d0597SMatthew G Knepley 
4783b21d0597SMatthew G Knepley   Level: intermediate
4784b21d0597SMatthew G Knepley 
4785bb7acecfSBarry Smith   Note:
4786bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
4787b21d0597SMatthew G Knepley 
47881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()`
4789b21d0597SMatthew G Knepley @*/
4790d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetPointSF(DM dm, PetscSF *sf)
4791d71ae5a4SJacob Faibussowitsch {
4792b21d0597SMatthew G Knepley   PetscFunctionBegin;
4793b21d0597SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
47944f572ea9SToby Isaac   PetscAssertPointer(sf, 2);
4795b21d0597SMatthew G Knepley   *sf = dm->sf;
47963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4797b21d0597SMatthew G Knepley }
4798b21d0597SMatthew G Knepley 
4799057b4bcdSMatthew G Knepley /*@
4800bb7acecfSBarry Smith   DMSetPointSF - Set the `PetscSF` encoding the parallel section point overlap for the `DM`.
4801bb7acecfSBarry Smith 
480220f4b53cSBarry Smith   Collective
4803057b4bcdSMatthew G Knepley 
4804057b4bcdSMatthew G Knepley   Input Parameters:
4805bb7acecfSBarry Smith + dm - The `DM`
4806bb7acecfSBarry Smith - sf - The `PetscSF`
4807057b4bcdSMatthew G Knepley 
4808057b4bcdSMatthew G Knepley   Level: intermediate
4809057b4bcdSMatthew G Knepley 
48101cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()`
4811057b4bcdSMatthew G Knepley @*/
4812d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetPointSF(DM dm, PetscSF sf)
4813d71ae5a4SJacob Faibussowitsch {
4814057b4bcdSMatthew G Knepley   PetscFunctionBegin;
4815057b4bcdSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4816b9d85ea2SLisandro Dalcin   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
48179566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)sf));
48189566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&dm->sf));
4819057b4bcdSMatthew G Knepley   dm->sf = sf;
48203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4821057b4bcdSMatthew G Knepley }
4822057b4bcdSMatthew G Knepley 
48234f37162bSMatthew G. Knepley /*@
4824bb7acecfSBarry Smith   DMGetNaturalSF - Get the `PetscSF` encoding the map back to the original mesh ordering
48254f37162bSMatthew G. Knepley 
48264f37162bSMatthew G. Knepley   Input Parameter:
4827bb7acecfSBarry Smith . dm - The `DM`
48284f37162bSMatthew G. Knepley 
48294f37162bSMatthew G. Knepley   Output Parameter:
4830bb7acecfSBarry Smith . sf - The `PetscSF`
48314f37162bSMatthew G. Knepley 
48324f37162bSMatthew G. Knepley   Level: intermediate
48334f37162bSMatthew G. Knepley 
4834bb7acecfSBarry Smith   Note:
4835bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
48364f37162bSMatthew G. Knepley 
48371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()`
48384f37162bSMatthew G. Knepley @*/
4839d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNaturalSF(DM dm, PetscSF *sf)
4840d71ae5a4SJacob Faibussowitsch {
48414f37162bSMatthew G. Knepley   PetscFunctionBegin;
48424f37162bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
48434f572ea9SToby Isaac   PetscAssertPointer(sf, 2);
48444f37162bSMatthew G. Knepley   *sf = dm->sfNatural;
48453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48464f37162bSMatthew G. Knepley }
48474f37162bSMatthew G. Knepley 
48484f37162bSMatthew G. Knepley /*@
48494f37162bSMatthew G. Knepley   DMSetNaturalSF - Set the PetscSF encoding the map back to the original mesh ordering
48504f37162bSMatthew G. Knepley 
48514f37162bSMatthew G. Knepley   Input Parameters:
48524f37162bSMatthew G. Knepley + dm - The DM
48534f37162bSMatthew G. Knepley - sf - The PetscSF
48544f37162bSMatthew G. Knepley 
48554f37162bSMatthew G. Knepley   Level: intermediate
48564f37162bSMatthew G. Knepley 
48571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()`
48584f37162bSMatthew G. Knepley @*/
4859d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNaturalSF(DM dm, PetscSF sf)
4860d71ae5a4SJacob Faibussowitsch {
48614f37162bSMatthew G. Knepley   PetscFunctionBegin;
48624f37162bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
48634f37162bSMatthew G. Knepley   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
48649566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)sf));
48659566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&dm->sfNatural));
48664f37162bSMatthew G. Knepley   dm->sfNatural = sf;
48673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48684f37162bSMatthew G. Knepley }
48694f37162bSMatthew G. Knepley 
4870d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetDefaultAdjacency_Private(DM dm, PetscInt f, PetscObject disc)
4871d71ae5a4SJacob Faibussowitsch {
487234aa8a36SMatthew G. Knepley   PetscClassId id;
487334aa8a36SMatthew G. Knepley 
487434aa8a36SMatthew G. Knepley   PetscFunctionBegin;
48759566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetClassId(disc, &id));
487634aa8a36SMatthew G. Knepley   if (id == PETSCFE_CLASSID) {
48779566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE));
487834aa8a36SMatthew G. Knepley   } else if (id == PETSCFV_CLASSID) {
48799566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, f, PETSC_TRUE, PETSC_FALSE));
488017c1d62eSMatthew G. Knepley   } else {
48819566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE));
488234aa8a36SMatthew G. Knepley   }
48833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
488434aa8a36SMatthew G. Knepley }
488534aa8a36SMatthew G. Knepley 
4886d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFieldEnlarge_Static(DM dm, PetscInt NfNew)
4887d71ae5a4SJacob Faibussowitsch {
488844a7f3ddSMatthew G. Knepley   RegionField *tmpr;
488944a7f3ddSMatthew G. Knepley   PetscInt     Nf = dm->Nf, f;
489044a7f3ddSMatthew G. Knepley 
489144a7f3ddSMatthew G. Knepley   PetscFunctionBegin;
48923ba16761SJacob Faibussowitsch   if (Nf >= NfNew) PetscFunctionReturn(PETSC_SUCCESS);
48939566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(NfNew, &tmpr));
489444a7f3ddSMatthew G. Knepley   for (f = 0; f < Nf; ++f) tmpr[f] = dm->fields[f];
48959371c9d4SSatish Balay   for (f = Nf; f < NfNew; ++f) {
48969371c9d4SSatish Balay     tmpr[f].disc        = NULL;
48979371c9d4SSatish Balay     tmpr[f].label       = NULL;
48989371c9d4SSatish Balay     tmpr[f].avoidTensor = PETSC_FALSE;
48999371c9d4SSatish Balay   }
49009566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->fields));
490144a7f3ddSMatthew G. Knepley   dm->Nf     = NfNew;
490244a7f3ddSMatthew G. Knepley   dm->fields = tmpr;
49033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
490444a7f3ddSMatthew G. Knepley }
490544a7f3ddSMatthew G. Knepley 
490644a7f3ddSMatthew G. Knepley /*@
490720f4b53cSBarry Smith   DMClearFields - Remove all fields from the `DM`
490844a7f3ddSMatthew G. Knepley 
490920f4b53cSBarry Smith   Logically Collective
491044a7f3ddSMatthew G. Knepley 
491144a7f3ddSMatthew G. Knepley   Input Parameter:
491220f4b53cSBarry Smith . dm - The `DM`
491344a7f3ddSMatthew G. Knepley 
491444a7f3ddSMatthew G. Knepley   Level: intermediate
491544a7f3ddSMatthew G. Knepley 
49161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetNumFields()`, `DMSetField()`
491744a7f3ddSMatthew G. Knepley @*/
4918d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearFields(DM dm)
4919d71ae5a4SJacob Faibussowitsch {
492044a7f3ddSMatthew G. Knepley   PetscInt f;
492144a7f3ddSMatthew G. Knepley 
492244a7f3ddSMatthew G. Knepley   PetscFunctionBegin;
492344a7f3ddSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
492444a7f3ddSMatthew G. Knepley   for (f = 0; f < dm->Nf; ++f) {
49259566063dSJacob Faibussowitsch     PetscCall(PetscObjectDestroy(&dm->fields[f].disc));
49269566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&dm->fields[f].label));
492744a7f3ddSMatthew G. Knepley   }
49289566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->fields));
492944a7f3ddSMatthew G. Knepley   dm->fields = NULL;
493044a7f3ddSMatthew G. Knepley   dm->Nf     = 0;
49313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
493244a7f3ddSMatthew G. Knepley }
493344a7f3ddSMatthew G. Knepley 
4934689b5837SMatthew G. Knepley /*@
493520f4b53cSBarry Smith   DMGetNumFields - Get the number of fields in the `DM`
4936689b5837SMatthew G. Knepley 
493720f4b53cSBarry Smith   Not Collective
4938689b5837SMatthew G. Knepley 
4939689b5837SMatthew G. Knepley   Input Parameter:
494020f4b53cSBarry Smith . dm - The `DM`
4941689b5837SMatthew G. Knepley 
4942689b5837SMatthew G. Knepley   Output Parameter:
494360225df5SJacob Faibussowitsch . numFields - The number of fields
4944689b5837SMatthew G. Knepley 
4945689b5837SMatthew G. Knepley   Level: intermediate
4946689b5837SMatthew G. Knepley 
49471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNumFields()`, `DMSetField()`
4948689b5837SMatthew G. Knepley @*/
4949d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumFields(DM dm, PetscInt *numFields)
4950d71ae5a4SJacob Faibussowitsch {
49510f21e855SMatthew G. Knepley   PetscFunctionBegin;
49520f21e855SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
49534f572ea9SToby Isaac   PetscAssertPointer(numFields, 2);
495444a7f3ddSMatthew G. Knepley   *numFields = dm->Nf;
49553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4956af122d2aSMatthew G Knepley }
4957af122d2aSMatthew G Knepley 
4958689b5837SMatthew G. Knepley /*@
495920f4b53cSBarry Smith   DMSetNumFields - Set the number of fields in the `DM`
4960689b5837SMatthew G. Knepley 
496120f4b53cSBarry Smith   Logically Collective
4962689b5837SMatthew G. Knepley 
4963689b5837SMatthew G. Knepley   Input Parameters:
496420f4b53cSBarry Smith + dm        - The `DM`
496560225df5SJacob Faibussowitsch - numFields - The number of fields
4966689b5837SMatthew G. Knepley 
4967689b5837SMatthew G. Knepley   Level: intermediate
4968689b5837SMatthew G. Knepley 
49691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetField()`
4970689b5837SMatthew G. Knepley @*/
4971d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNumFields(DM dm, PetscInt numFields)
4972d71ae5a4SJacob Faibussowitsch {
49730f21e855SMatthew G. Knepley   PetscInt Nf, f;
4974af122d2aSMatthew G Knepley 
4975af122d2aSMatthew G Knepley   PetscFunctionBegin;
4976af122d2aSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
49779566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
49780f21e855SMatthew G. Knepley   for (f = Nf; f < numFields; ++f) {
49790f21e855SMatthew G. Knepley     PetscContainer obj;
49800f21e855SMatthew G. Knepley 
49819566063dSJacob Faibussowitsch     PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject)dm), &obj));
49829566063dSJacob Faibussowitsch     PetscCall(DMAddField(dm, NULL, (PetscObject)obj));
49839566063dSJacob Faibussowitsch     PetscCall(PetscContainerDestroy(&obj));
4984af122d2aSMatthew G Knepley   }
49853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4986af122d2aSMatthew G Knepley }
4987af122d2aSMatthew G Knepley 
4988c1929be8SMatthew G. Knepley /*@
4989bb7acecfSBarry Smith   DMGetField - Return the `DMLabel` and discretization object for a given `DM` field
4990c1929be8SMatthew G. Knepley 
499120f4b53cSBarry Smith   Not Collective
4992c1929be8SMatthew G. Knepley 
4993c1929be8SMatthew G. Knepley   Input Parameters:
4994bb7acecfSBarry Smith + dm - The `DM`
4995c1929be8SMatthew G. Knepley - f  - The field number
4996c1929be8SMatthew G. Knepley 
499744a7f3ddSMatthew G. Knepley   Output Parameters:
499820f4b53cSBarry Smith + label - The label indicating the support of the field, or `NULL` for the entire mesh (pass in `NULL` if not needed)
499920f4b53cSBarry Smith - disc  - The discretization object (pass in `NULL` if not needed)
5000c1929be8SMatthew G. Knepley 
500144a7f3ddSMatthew G. Knepley   Level: intermediate
5002c1929be8SMatthew G. Knepley 
50031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`
5004c1929be8SMatthew G. Knepley @*/
5005d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetField(DM dm, PetscInt f, DMLabel *label, PetscObject *disc)
5006d71ae5a4SJacob Faibussowitsch {
5007af122d2aSMatthew G Knepley   PetscFunctionBegin;
5008af122d2aSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
50094f572ea9SToby Isaac   PetscAssertPointer(disc, 4);
50107a8be351SBarry Smith   PetscCheck((f >= 0) && (f < dm->Nf), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, dm->Nf);
501144a7f3ddSMatthew G. Knepley   if (label) *label = dm->fields[f].label;
5012bb7acecfSBarry Smith   if (disc) *disc = dm->fields[f].disc;
50133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5014decb47aaSMatthew G. Knepley }
5015decb47aaSMatthew G. Knepley 
5016083401c6SMatthew G. Knepley /* Does not clear the DS */
5017d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField_Internal(DM dm, PetscInt f, DMLabel label, PetscObject disc)
5018d71ae5a4SJacob Faibussowitsch {
5019083401c6SMatthew G. Knepley   PetscFunctionBegin;
50209566063dSJacob Faibussowitsch   PetscCall(DMFieldEnlarge_Static(dm, f + 1));
50219566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&dm->fields[f].label));
50229566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&dm->fields[f].disc));
5023083401c6SMatthew G. Knepley   dm->fields[f].label = label;
5024bb7acecfSBarry Smith   dm->fields[f].disc  = disc;
50259566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
5026bb7acecfSBarry Smith   PetscCall(PetscObjectReference((PetscObject)disc));
50273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5028083401c6SMatthew G. Knepley }
5029083401c6SMatthew G. Knepley 
5030ffeef943SBarry Smith /*@
5031bb7acecfSBarry Smith   DMSetField - Set the discretization object for a given `DM` field. Usually one would call `DMAddField()` which automatically handles
5032bb7acecfSBarry Smith   the field numbering.
5033c1929be8SMatthew G. Knepley 
503420f4b53cSBarry Smith   Logically Collective
5035c1929be8SMatthew G. Knepley 
5036c1929be8SMatthew G. Knepley   Input Parameters:
5037bb7acecfSBarry Smith + dm    - The `DM`
5038c1929be8SMatthew G. Knepley . f     - The field number
503920f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh
5040bb7acecfSBarry Smith - disc  - The discretization object
5041c1929be8SMatthew G. Knepley 
504244a7f3ddSMatthew G. Knepley   Level: intermediate
5043c1929be8SMatthew G. Knepley 
50441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`
5045c1929be8SMatthew G. Knepley @*/
5046d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField(DM dm, PetscInt f, DMLabel label, PetscObject disc)
5047d71ae5a4SJacob Faibussowitsch {
5048decb47aaSMatthew G. Knepley   PetscFunctionBegin;
5049decb47aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5050e5e52638SMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3);
5051bb7acecfSBarry Smith   PetscValidHeader(disc, 4);
50527a8be351SBarry Smith   PetscCheck(f >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be non-negative", f);
5053bb7acecfSBarry Smith   PetscCall(DMSetField_Internal(dm, f, label, disc));
5054bb7acecfSBarry Smith   PetscCall(DMSetDefaultAdjacency_Private(dm, f, disc));
50559566063dSJacob Faibussowitsch   PetscCall(DMClearDS(dm));
50563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
505744a7f3ddSMatthew G. Knepley }
505844a7f3ddSMatthew G. Knepley 
5059ffeef943SBarry Smith /*@
5060bb7acecfSBarry Smith   DMAddField - Add a field to a `DM` object. A field is a function space defined by of a set of discretization points (geometric entities)
5061bb7acecfSBarry Smith   and a discretization object that defines the function space associated with those points.
506244a7f3ddSMatthew G. Knepley 
506320f4b53cSBarry Smith   Logically Collective
506444a7f3ddSMatthew G. Knepley 
506544a7f3ddSMatthew G. Knepley   Input Parameters:
5066bb7acecfSBarry Smith + dm    - The `DM`
506720f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh
5068bb7acecfSBarry Smith - disc  - The discretization object
506944a7f3ddSMatthew G. Knepley 
507044a7f3ddSMatthew G. Knepley   Level: intermediate
507144a7f3ddSMatthew G. Knepley 
5072bb7acecfSBarry Smith   Notes:
5073bb7acecfSBarry Smith   The label already exists or will be added to the `DM` with `DMSetLabel()`.
5074bb7acecfSBarry Smith 
5075da81f932SPierre Jolivet   For example, a piecewise continuous pressure field can be defined by coefficients at the cell centers of a mesh and piecewise constant functions
5076bb7acecfSBarry Smith   within each cell. Thus a specific function in the space is defined by the combination of a `Vec` containing the coefficients, a `DM` defining the
5077bb7acecfSBarry Smith   geometry entities, a `DMLabel` indicating a subset of those geometric entities, and a discretization object, such as a `PetscFE`.
5078bb7acecfSBarry Smith 
50791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLabel()`, `DMSetField()`, `DMGetField()`, `PetscFE`
508044a7f3ddSMatthew G. Knepley @*/
5081d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddField(DM dm, DMLabel label, PetscObject disc)
5082d71ae5a4SJacob Faibussowitsch {
508344a7f3ddSMatthew G. Knepley   PetscInt Nf = dm->Nf;
508444a7f3ddSMatthew G. Knepley 
508544a7f3ddSMatthew G. Knepley   PetscFunctionBegin;
508644a7f3ddSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5087064a246eSJacob Faibussowitsch   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
5088bb7acecfSBarry Smith   PetscValidHeader(disc, 3);
50899566063dSJacob Faibussowitsch   PetscCall(DMFieldEnlarge_Static(dm, Nf + 1));
509044a7f3ddSMatthew G. Knepley   dm->fields[Nf].label = label;
5091bb7acecfSBarry Smith   dm->fields[Nf].disc  = disc;
50929566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
5093bb7acecfSBarry Smith   PetscCall(PetscObjectReference((PetscObject)disc));
5094bb7acecfSBarry Smith   PetscCall(DMSetDefaultAdjacency_Private(dm, Nf, disc));
50959566063dSJacob Faibussowitsch   PetscCall(DMClearDS(dm));
50963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5097af122d2aSMatthew G Knepley }
50986636e97aSMatthew G Knepley 
5099e5e52638SMatthew G. Knepley /*@
5100e0b68406SMatthew Knepley   DMSetFieldAvoidTensor - Set flag to avoid defining the field on tensor cells
5101e0b68406SMatthew Knepley 
510220f4b53cSBarry Smith   Logically Collective
5103e0b68406SMatthew Knepley 
5104e0b68406SMatthew Knepley   Input Parameters:
5105bb7acecfSBarry Smith + dm          - The `DM`
5106e0b68406SMatthew Knepley . f           - The field index
5107bb7acecfSBarry Smith - avoidTensor - `PETSC_TRUE` to skip defining the field on tensor cells
5108e0b68406SMatthew Knepley 
5109e0b68406SMatthew Knepley   Level: intermediate
5110e0b68406SMatthew Knepley 
51111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()`
5112e0b68406SMatthew Knepley @*/
5113d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFieldAvoidTensor(DM dm, PetscInt f, PetscBool avoidTensor)
5114d71ae5a4SJacob Faibussowitsch {
5115e0b68406SMatthew Knepley   PetscFunctionBegin;
511663a3b9bcSJacob Faibussowitsch   PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf);
5117e0b68406SMatthew Knepley   dm->fields[f].avoidTensor = avoidTensor;
51183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5119e0b68406SMatthew Knepley }
5120e0b68406SMatthew Knepley 
5121e0b68406SMatthew Knepley /*@
5122e0b68406SMatthew Knepley   DMGetFieldAvoidTensor - Get flag to avoid defining the field on tensor cells
5123e0b68406SMatthew Knepley 
512420f4b53cSBarry Smith   Not Collective
5125e0b68406SMatthew Knepley 
5126e0b68406SMatthew Knepley   Input Parameters:
5127bb7acecfSBarry Smith + dm - The `DM`
5128e0b68406SMatthew Knepley - f  - The field index
5129e0b68406SMatthew Knepley 
5130e0b68406SMatthew Knepley   Output Parameter:
5131e0b68406SMatthew Knepley . avoidTensor - The flag to avoid defining the field on tensor cells
5132e0b68406SMatthew Knepley 
5133e0b68406SMatthew Knepley   Level: intermediate
5134e0b68406SMatthew Knepley 
513560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`, `DMGetField()`, `DMSetFieldAvoidTensor()`
5136e0b68406SMatthew Knepley @*/
5137d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFieldAvoidTensor(DM dm, PetscInt f, PetscBool *avoidTensor)
5138d71ae5a4SJacob Faibussowitsch {
5139e0b68406SMatthew Knepley   PetscFunctionBegin;
514063a3b9bcSJacob Faibussowitsch   PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf);
5141e0b68406SMatthew Knepley   *avoidTensor = dm->fields[f].avoidTensor;
51423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5143e0b68406SMatthew Knepley }
5144e0b68406SMatthew Knepley 
5145e0b68406SMatthew Knepley /*@
5146bb7acecfSBarry Smith   DMCopyFields - Copy the discretizations for the `DM` into another `DM`
5147e5e52638SMatthew G. Knepley 
514820f4b53cSBarry Smith   Collective
5149e5e52638SMatthew G. Knepley 
5150e5e52638SMatthew G. Knepley   Input Parameter:
5151bb7acecfSBarry Smith . dm - The `DM`
5152e5e52638SMatthew G. Knepley 
5153e5e52638SMatthew G. Knepley   Output Parameter:
5154bb7acecfSBarry Smith . newdm - The `DM`
5155e5e52638SMatthew G. Knepley 
5156e5e52638SMatthew G. Knepley   Level: advanced
5157e5e52638SMatthew G. Knepley 
51581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetField()`, `DMSetField()`, `DMAddField()`, `DMCopyDS()`, `DMGetDS()`, `DMGetCellDS()`
5159e5e52638SMatthew G. Knepley @*/
5160d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyFields(DM dm, DM newdm)
5161d71ae5a4SJacob Faibussowitsch {
5162e5e52638SMatthew G. Knepley   PetscInt Nf, f;
5163e5e52638SMatthew G. Knepley 
5164e5e52638SMatthew G. Knepley   PetscFunctionBegin;
51653ba16761SJacob Faibussowitsch   if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS);
51669566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
51679566063dSJacob Faibussowitsch   PetscCall(DMClearFields(newdm));
5168e5e52638SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
5169e5e52638SMatthew G. Knepley     DMLabel     label;
5170e5e52638SMatthew G. Knepley     PetscObject field;
517134aa8a36SMatthew G. Knepley     PetscBool   useCone, useClosure;
5172e5e52638SMatthew G. Knepley 
51739566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, f, &label, &field));
51749566063dSJacob Faibussowitsch     PetscCall(DMSetField(newdm, f, label, field));
51759566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, f, &useCone, &useClosure));
51769566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(newdm, f, useCone, useClosure));
517734aa8a36SMatthew G. Knepley   }
51783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
517934aa8a36SMatthew G. Knepley }
518034aa8a36SMatthew G. Knepley 
518134aa8a36SMatthew G. Knepley /*@
518234aa8a36SMatthew G. Knepley   DMGetAdjacency - Returns the flags for determining variable influence
518334aa8a36SMatthew G. Knepley 
518420f4b53cSBarry Smith   Not Collective
518534aa8a36SMatthew G. Knepley 
518634aa8a36SMatthew G. Knepley   Input Parameters:
518720f4b53cSBarry Smith + dm - The `DM` object
518820f4b53cSBarry Smith - f  - The field number, or `PETSC_DEFAULT` for the default adjacency
518934aa8a36SMatthew G. Knepley 
5190d8d19677SJose E. Roman   Output Parameters:
519134aa8a36SMatthew G. Knepley + useCone    - Flag for variable influence starting with the cone operation
519234aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
519334aa8a36SMatthew G. Knepley 
519434aa8a36SMatthew G. Knepley   Level: developer
519534aa8a36SMatthew G. Knepley 
519620f4b53cSBarry Smith   Notes:
519720f4b53cSBarry Smith .vb
519820f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
519920f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
520020f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
520120f4b53cSBarry Smith .ve
520220f4b53cSBarry Smith   Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another.
520320f4b53cSBarry Smith 
52041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetAdjacency()`, `DMGetField()`, `DMSetField()`
520534aa8a36SMatthew G. Knepley @*/
5206d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAdjacency(DM dm, PetscInt f, PetscBool *useCone, PetscBool *useClosure)
5207d71ae5a4SJacob Faibussowitsch {
520834aa8a36SMatthew G. Knepley   PetscFunctionBegin;
520934aa8a36SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
52104f572ea9SToby Isaac   if (useCone) PetscAssertPointer(useCone, 3);
52114f572ea9SToby Isaac   if (useClosure) PetscAssertPointer(useClosure, 4);
521234aa8a36SMatthew G. Knepley   if (f < 0) {
521334aa8a36SMatthew G. Knepley     if (useCone) *useCone = dm->adjacency[0];
521434aa8a36SMatthew G. Knepley     if (useClosure) *useClosure = dm->adjacency[1];
521534aa8a36SMatthew G. Knepley   } else {
521634aa8a36SMatthew G. Knepley     PetscInt Nf;
521734aa8a36SMatthew G. Knepley 
52189566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
52197a8be351SBarry Smith     PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf);
522034aa8a36SMatthew G. Knepley     if (useCone) *useCone = dm->fields[f].adjacency[0];
522134aa8a36SMatthew G. Knepley     if (useClosure) *useClosure = dm->fields[f].adjacency[1];
522234aa8a36SMatthew G. Knepley   }
52233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
522434aa8a36SMatthew G. Knepley }
522534aa8a36SMatthew G. Knepley 
522634aa8a36SMatthew G. Knepley /*@
522734aa8a36SMatthew G. Knepley   DMSetAdjacency - Set the flags for determining variable influence
522834aa8a36SMatthew G. Knepley 
522920f4b53cSBarry Smith   Not Collective
523034aa8a36SMatthew G. Knepley 
523134aa8a36SMatthew G. Knepley   Input Parameters:
523220f4b53cSBarry Smith + dm         - The `DM` object
523334aa8a36SMatthew G. Knepley . f          - The field number
523434aa8a36SMatthew G. Knepley . useCone    - Flag for variable influence starting with the cone operation
523534aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
523634aa8a36SMatthew G. Knepley 
523734aa8a36SMatthew G. Knepley   Level: developer
523834aa8a36SMatthew G. Knepley 
523920f4b53cSBarry Smith   Notes:
524020f4b53cSBarry Smith .vb
524120f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
524220f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
524320f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
524420f4b53cSBarry Smith .ve
524520f4b53cSBarry Smith   Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another.
524620f4b53cSBarry Smith 
52471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetAdjacency()`, `DMGetField()`, `DMSetField()`
524834aa8a36SMatthew G. Knepley @*/
5249d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAdjacency(DM dm, PetscInt f, PetscBool useCone, PetscBool useClosure)
5250d71ae5a4SJacob Faibussowitsch {
525134aa8a36SMatthew G. Knepley   PetscFunctionBegin;
525234aa8a36SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
525334aa8a36SMatthew G. Knepley   if (f < 0) {
525434aa8a36SMatthew G. Knepley     dm->adjacency[0] = useCone;
525534aa8a36SMatthew G. Knepley     dm->adjacency[1] = useClosure;
525634aa8a36SMatthew G. Knepley   } else {
525734aa8a36SMatthew G. Knepley     PetscInt Nf;
525834aa8a36SMatthew G. Knepley 
52599566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
52607a8be351SBarry Smith     PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf);
526134aa8a36SMatthew G. Knepley     dm->fields[f].adjacency[0] = useCone;
526234aa8a36SMatthew G. Knepley     dm->fields[f].adjacency[1] = useClosure;
5263e5e52638SMatthew G. Knepley   }
52643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5265e5e52638SMatthew G. Knepley }
5266e5e52638SMatthew G. Knepley 
5267b0441da4SMatthew G. Knepley /*@
5268b0441da4SMatthew G. Knepley   DMGetBasicAdjacency - Returns the flags for determining variable influence, using either the default or field 0 if it is defined
5269b0441da4SMatthew G. Knepley 
5270b0441da4SMatthew G. Knepley   Not collective
5271b0441da4SMatthew G. Knepley 
5272f899ff85SJose E. Roman   Input Parameter:
527320f4b53cSBarry Smith . dm - The `DM` object
5274b0441da4SMatthew G. Knepley 
5275d8d19677SJose E. Roman   Output Parameters:
5276b0441da4SMatthew G. Knepley + useCone    - Flag for variable influence starting with the cone operation
5277b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
5278b0441da4SMatthew G. Knepley 
5279b0441da4SMatthew G. Knepley   Level: developer
5280b0441da4SMatthew G. Knepley 
528120f4b53cSBarry Smith   Notes:
528220f4b53cSBarry Smith .vb
528320f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
528420f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
528520f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
528620f4b53cSBarry Smith .ve
528720f4b53cSBarry Smith 
52881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetBasicAdjacency()`, `DMGetField()`, `DMSetField()`
5289b0441da4SMatthew G. Knepley @*/
5290d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasicAdjacency(DM dm, PetscBool *useCone, PetscBool *useClosure)
5291d71ae5a4SJacob Faibussowitsch {
5292b0441da4SMatthew G. Knepley   PetscInt Nf;
5293b0441da4SMatthew G. Knepley 
5294b0441da4SMatthew G. Knepley   PetscFunctionBegin;
5295b0441da4SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
52964f572ea9SToby Isaac   if (useCone) PetscAssertPointer(useCone, 2);
52974f572ea9SToby Isaac   if (useClosure) PetscAssertPointer(useClosure, 3);
52989566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
5299b0441da4SMatthew G. Knepley   if (!Nf) {
53009566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure));
5301b0441da4SMatthew G. Knepley   } else {
53029566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, 0, useCone, useClosure));
5303b0441da4SMatthew G. Knepley   }
53043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5305b0441da4SMatthew G. Knepley }
5306b0441da4SMatthew G. Knepley 
5307b0441da4SMatthew G. Knepley /*@
5308b0441da4SMatthew G. Knepley   DMSetBasicAdjacency - Set the flags for determining variable influence, using either the default or field 0 if it is defined
5309b0441da4SMatthew G. Knepley 
531020f4b53cSBarry Smith   Not Collective
5311b0441da4SMatthew G. Knepley 
5312b0441da4SMatthew G. Knepley   Input Parameters:
531320f4b53cSBarry Smith + dm         - The `DM` object
5314b0441da4SMatthew G. Knepley . useCone    - Flag for variable influence starting with the cone operation
5315b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
5316b0441da4SMatthew G. Knepley 
5317b0441da4SMatthew G. Knepley   Level: developer
5318b0441da4SMatthew G. Knepley 
531920f4b53cSBarry Smith   Notes:
532020f4b53cSBarry Smith .vb
532120f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
532220f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
532320f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
532420f4b53cSBarry Smith .ve
532520f4b53cSBarry Smith 
53261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetBasicAdjacency()`, `DMGetField()`, `DMSetField()`
5327b0441da4SMatthew G. Knepley @*/
5328d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetBasicAdjacency(DM dm, PetscBool useCone, PetscBool useClosure)
5329d71ae5a4SJacob Faibussowitsch {
5330b0441da4SMatthew G. Knepley   PetscInt Nf;
5331b0441da4SMatthew G. Knepley 
5332b0441da4SMatthew G. Knepley   PetscFunctionBegin;
5333b0441da4SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
53349566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
5335b0441da4SMatthew G. Knepley   if (!Nf) {
53369566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure));
5337b0441da4SMatthew G. Knepley   } else {
53389566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, 0, useCone, useClosure));
5339e5e52638SMatthew G. Knepley   }
53403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5341e5e52638SMatthew G. Knepley }
5342e5e52638SMatthew G. Knepley 
5343d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompleteBCLabels_Internal(DM dm)
5344d71ae5a4SJacob Faibussowitsch {
5345799db056SMatthew G. Knepley   DM           plex;
5346799db056SMatthew G. Knepley   DMLabel     *labels, *glabels;
5347799db056SMatthew G. Knepley   const char **names;
5348799db056SMatthew G. Knepley   char        *sendNames, *recvNames;
5349799db056SMatthew G. Knepley   PetscInt     Nds, s, maxLabels = 0, maxLen = 0, gmaxLen, Nl = 0, gNl, l, gl, m;
5350799db056SMatthew G. Knepley   size_t       len;
5351799db056SMatthew G. Knepley   MPI_Comm     comm;
5352799db056SMatthew G. Knepley   PetscMPIInt  rank, size, p, *counts, *displs;
5353783e2ec8SMatthew G. Knepley 
5354783e2ec8SMatthew G. Knepley   PetscFunctionBegin;
5355799db056SMatthew G. Knepley   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
5356799db056SMatthew G. Knepley   PetscCallMPI(MPI_Comm_size(comm, &size));
5357799db056SMatthew G. Knepley   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5358799db056SMatthew G. Knepley   PetscCall(DMGetNumDS(dm, &Nds));
5359799db056SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5360799db056SMatthew G. Knepley     PetscDS  dsBC;
5361799db056SMatthew G. Knepley     PetscInt numBd;
5362799db056SMatthew G. Knepley 
536307218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL));
5364799db056SMatthew G. Knepley     PetscCall(PetscDSGetNumBoundary(dsBC, &numBd));
5365799db056SMatthew G. Knepley     maxLabels += numBd;
5366799db056SMatthew G. Knepley   }
5367799db056SMatthew G. Knepley   PetscCall(PetscCalloc1(maxLabels, &labels));
5368799db056SMatthew G. Knepley   /* Get list of labels to be completed */
5369799db056SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5370799db056SMatthew G. Knepley     PetscDS  dsBC;
5371799db056SMatthew G. Knepley     PetscInt numBd, bd;
5372799db056SMatthew G. Knepley 
537307218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL));
5374799db056SMatthew G. Knepley     PetscCall(PetscDSGetNumBoundary(dsBC, &numBd));
5375799db056SMatthew G. Knepley     for (bd = 0; bd < numBd; ++bd) {
5376799db056SMatthew G. Knepley       DMLabel      label;
5377799db056SMatthew G. Knepley       PetscInt     field;
5378799db056SMatthew G. Knepley       PetscObject  obj;
5379799db056SMatthew G. Knepley       PetscClassId id;
5380799db056SMatthew G. Knepley 
5381799db056SMatthew G. Knepley       PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL));
53829566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, &obj));
53839566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
5384799db056SMatthew G. Knepley       if (!(id == PETSCFE_CLASSID) || !label) continue;
53859371c9d4SSatish Balay       for (l = 0; l < Nl; ++l)
53869371c9d4SSatish Balay         if (labels[l] == label) break;
5387799db056SMatthew G. Knepley       if (l == Nl) labels[Nl++] = label;
5388783e2ec8SMatthew G. Knepley     }
5389799db056SMatthew G. Knepley   }
5390799db056SMatthew G. Knepley   /* Get label names */
5391799db056SMatthew G. Knepley   PetscCall(PetscMalloc1(Nl, &names));
5392799db056SMatthew G. Knepley   for (l = 0; l < Nl; ++l) PetscCall(PetscObjectGetName((PetscObject)labels[l], &names[l]));
53939371c9d4SSatish Balay   for (l = 0; l < Nl; ++l) {
53949371c9d4SSatish Balay     PetscCall(PetscStrlen(names[l], &len));
53959371c9d4SSatish Balay     maxLen = PetscMax(maxLen, (PetscInt)len + 2);
53969371c9d4SSatish Balay   }
5397799db056SMatthew G. Knepley   PetscCall(PetscFree(labels));
5398712fec58SPierre Jolivet   PetscCall(MPIU_Allreduce(&maxLen, &gmaxLen, 1, MPIU_INT, MPI_MAX, comm));
5399799db056SMatthew G. Knepley   PetscCall(PetscCalloc1(Nl * gmaxLen, &sendNames));
5400c6a7a370SJeremy L Thompson   for (l = 0; l < Nl; ++l) PetscCall(PetscStrncpy(&sendNames[gmaxLen * l], names[l], gmaxLen));
5401799db056SMatthew G. Knepley   PetscCall(PetscFree(names));
5402799db056SMatthew G. Knepley   /* Put all names on all processes */
5403799db056SMatthew G. Knepley   PetscCall(PetscCalloc2(size, &counts, size + 1, &displs));
5404799db056SMatthew G. Knepley   PetscCallMPI(MPI_Allgather(&Nl, 1, MPI_INT, counts, 1, MPI_INT, comm));
5405799db056SMatthew G. Knepley   for (p = 0; p < size; ++p) displs[p + 1] = displs[p] + counts[p];
5406799db056SMatthew G. Knepley   gNl = displs[size];
54079371c9d4SSatish Balay   for (p = 0; p < size; ++p) {
54089371c9d4SSatish Balay     counts[p] *= gmaxLen;
54099371c9d4SSatish Balay     displs[p] *= gmaxLen;
54109371c9d4SSatish Balay   }
5411799db056SMatthew G. Knepley   PetscCall(PetscCalloc2(gNl * gmaxLen, &recvNames, gNl, &glabels));
5412799db056SMatthew G. Knepley   PetscCallMPI(MPI_Allgatherv(sendNames, counts[rank], MPI_CHAR, recvNames, counts, displs, MPI_CHAR, comm));
5413799db056SMatthew G. Knepley   PetscCall(PetscFree2(counts, displs));
5414799db056SMatthew G. Knepley   PetscCall(PetscFree(sendNames));
5415799db056SMatthew G. Knepley   for (l = 0, gl = 0; l < gNl; ++l) {
5416799db056SMatthew G. Knepley     PetscCall(DMGetLabel(dm, &recvNames[l * gmaxLen], &glabels[gl]));
5417799db056SMatthew G. Knepley     PetscCheck(glabels[gl], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Label %s missing on rank %d", &recvNames[l * gmaxLen], rank);
54189371c9d4SSatish Balay     for (m = 0; m < gl; ++m)
54199371c9d4SSatish Balay       if (glabels[m] == glabels[gl]) continue;
54209566063dSJacob Faibussowitsch     PetscCall(DMConvert(dm, DMPLEX, &plex));
5421799db056SMatthew G. Knepley     PetscCall(DMPlexLabelComplete(plex, glabels[gl]));
54229566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&plex));
5423799db056SMatthew G. Knepley     ++gl;
5424783e2ec8SMatthew G. Knepley   }
5425799db056SMatthew G. Knepley   PetscCall(PetscFree2(recvNames, glabels));
54263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5427783e2ec8SMatthew G. Knepley }
5428783e2ec8SMatthew G. Knepley 
5429d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDSEnlarge_Static(DM dm, PetscInt NdsNew)
5430d71ae5a4SJacob Faibussowitsch {
5431e5e52638SMatthew G. Knepley   DMSpace *tmpd;
5432e5e52638SMatthew G. Knepley   PetscInt Nds = dm->Nds, s;
5433e5e52638SMatthew G. Knepley 
5434e5e52638SMatthew G. Knepley   PetscFunctionBegin;
54353ba16761SJacob Faibussowitsch   if (Nds >= NdsNew) PetscFunctionReturn(PETSC_SUCCESS);
54369566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(NdsNew, &tmpd));
5437e5e52638SMatthew G. Knepley   for (s = 0; s < Nds; ++s) tmpd[s] = dm->probs[s];
54389371c9d4SSatish Balay   for (s = Nds; s < NdsNew; ++s) {
54399371c9d4SSatish Balay     tmpd[s].ds     = NULL;
54409371c9d4SSatish Balay     tmpd[s].label  = NULL;
54419371c9d4SSatish Balay     tmpd[s].fields = NULL;
54429371c9d4SSatish Balay   }
54439566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->probs));
5444e5e52638SMatthew G. Knepley   dm->Nds   = NdsNew;
5445e5e52638SMatthew G. Knepley   dm->probs = tmpd;
54463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5447e5e52638SMatthew G. Knepley }
5448e5e52638SMatthew G. Knepley 
5449e5e52638SMatthew G. Knepley /*@
545020f4b53cSBarry Smith   DMGetNumDS - Get the number of discrete systems in the `DM`
5451e5e52638SMatthew G. Knepley 
545220f4b53cSBarry Smith   Not Collective
5453e5e52638SMatthew G. Knepley 
5454e5e52638SMatthew G. Knepley   Input Parameter:
545520f4b53cSBarry Smith . dm - The `DM`
5456e5e52638SMatthew G. Knepley 
5457e5e52638SMatthew G. Knepley   Output Parameter:
545820f4b53cSBarry Smith . Nds - The number of `PetscDS` objects
5459e5e52638SMatthew G. Knepley 
5460e5e52638SMatthew G. Knepley   Level: intermediate
5461e5e52638SMatthew G. Knepley 
54621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMGetCellDS()`
5463e5e52638SMatthew G. Knepley @*/
5464d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumDS(DM dm, PetscInt *Nds)
5465d71ae5a4SJacob Faibussowitsch {
5466e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5467e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
54684f572ea9SToby Isaac   PetscAssertPointer(Nds, 2);
5469e5e52638SMatthew G. Knepley   *Nds = dm->Nds;
54703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5471e5e52638SMatthew G. Knepley }
5472e5e52638SMatthew G. Knepley 
5473e5e52638SMatthew G. Knepley /*@
547420f4b53cSBarry Smith   DMClearDS - Remove all discrete systems from the `DM`
5475e5e52638SMatthew G. Knepley 
547620f4b53cSBarry Smith   Logically Collective
5477e5e52638SMatthew G. Knepley 
5478e5e52638SMatthew G. Knepley   Input Parameter:
547920f4b53cSBarry Smith . dm - The `DM`
5480e5e52638SMatthew G. Knepley 
5481e5e52638SMatthew G. Knepley   Level: intermediate
5482e5e52638SMatthew G. Knepley 
54831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumDS()`, `DMGetDS()`, `DMSetField()`
5484e5e52638SMatthew G. Knepley @*/
5485d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearDS(DM dm)
5486d71ae5a4SJacob Faibussowitsch {
5487e5e52638SMatthew G. Knepley   PetscInt s;
5488e5e52638SMatthew G. Knepley 
5489e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5490e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5491e5e52638SMatthew G. Knepley   for (s = 0; s < dm->Nds; ++s) {
54929566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dm->probs[s].ds));
549307218a29SMatthew G. Knepley     PetscCall(PetscDSDestroy(&dm->probs[s].dsIn));
54949566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&dm->probs[s].label));
54959566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&dm->probs[s].fields));
5496e5e52638SMatthew G. Knepley   }
54979566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->probs));
5498e5e52638SMatthew G. Knepley   dm->probs = NULL;
5499e5e52638SMatthew G. Knepley   dm->Nds   = 0;
55003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5501e5e52638SMatthew G. Knepley }
5502e5e52638SMatthew G. Knepley 
5503e5e52638SMatthew G. Knepley /*@
550420f4b53cSBarry Smith   DMGetDS - Get the default `PetscDS`
5505e5e52638SMatthew G. Knepley 
550620f4b53cSBarry Smith   Not Collective
5507e5e52638SMatthew G. Knepley 
5508e5e52638SMatthew G. Knepley   Input Parameter:
550920f4b53cSBarry Smith . dm - The `DM`
5510e5e52638SMatthew G. Knepley 
5511e5e52638SMatthew G. Knepley   Output Parameter:
551207218a29SMatthew G. Knepley . ds - The default `PetscDS`
5513e5e52638SMatthew G. Knepley 
5514e5e52638SMatthew G. Knepley   Level: intermediate
5515e5e52638SMatthew G. Knepley 
55161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCellDS()`, `DMGetRegionDS()`
5517e5e52638SMatthew G. Knepley @*/
551807218a29SMatthew G. Knepley PetscErrorCode DMGetDS(DM dm, PetscDS *ds)
5519d71ae5a4SJacob Faibussowitsch {
5520e5e52638SMatthew G. Knepley   PetscFunctionBeginHot;
5521e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
55224f572ea9SToby Isaac   PetscAssertPointer(ds, 2);
552307218a29SMatthew G. Knepley   PetscCheck(dm->Nds > 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Need to call DMCreateDS() before calling DMGetDS()");
552407218a29SMatthew G. Knepley   *ds = dm->probs[0].ds;
55253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5526e5e52638SMatthew G. Knepley }
5527e5e52638SMatthew G. Knepley 
5528e5e52638SMatthew G. Knepley /*@
552920f4b53cSBarry Smith   DMGetCellDS - Get the `PetscDS` defined on a given cell
5530e5e52638SMatthew G. Knepley 
553120f4b53cSBarry Smith   Not Collective
5532e5e52638SMatthew G. Knepley 
5533e5e52638SMatthew G. Knepley   Input Parameters:
553420f4b53cSBarry Smith + dm    - The `DM`
553520f4b53cSBarry Smith - point - Cell for the `PetscDS`
5536e5e52638SMatthew G. Knepley 
553707218a29SMatthew G. Knepley   Output Parameters:
553807218a29SMatthew G. Knepley + ds   - The `PetscDS` defined on the given cell
553907218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or NULL if the same ds
5540e5e52638SMatthew G. Knepley 
5541e5e52638SMatthew G. Knepley   Level: developer
5542e5e52638SMatthew G. Knepley 
55431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMSetRegionDS()`
5544e5e52638SMatthew G. Knepley @*/
554507218a29SMatthew G. Knepley PetscErrorCode DMGetCellDS(DM dm, PetscInt point, PetscDS *ds, PetscDS *dsIn)
5546d71ae5a4SJacob Faibussowitsch {
554707218a29SMatthew G. Knepley   PetscDS  dsDef = NULL;
5548e5e52638SMatthew G. Knepley   PetscInt s;
5549e5e52638SMatthew G. Knepley 
5550e5e52638SMatthew G. Knepley   PetscFunctionBeginHot;
5551e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
55524f572ea9SToby Isaac   if (ds) PetscAssertPointer(ds, 3);
55534f572ea9SToby Isaac   if (dsIn) PetscAssertPointer(dsIn, 4);
555463a3b9bcSJacob Faibussowitsch   PetscCheck(point >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Mesh point cannot be negative: %" PetscInt_FMT, point);
555507218a29SMatthew G. Knepley   if (ds) *ds = NULL;
555607218a29SMatthew G. Knepley   if (dsIn) *dsIn = NULL;
5557e5e52638SMatthew G. Knepley   for (s = 0; s < dm->Nds; ++s) {
5558e5e52638SMatthew G. Knepley     PetscInt val;
5559e5e52638SMatthew G. Knepley 
55609371c9d4SSatish Balay     if (!dm->probs[s].label) {
556107218a29SMatthew G. Knepley       dsDef = dm->probs[s].ds;
55629371c9d4SSatish Balay     } else {
55639566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(dm->probs[s].label, point, &val));
55649371c9d4SSatish Balay       if (val >= 0) {
556507218a29SMatthew G. Knepley         if (ds) *ds = dm->probs[s].ds;
556607218a29SMatthew G. Knepley         if (dsIn) *dsIn = dm->probs[s].dsIn;
55679371c9d4SSatish Balay         break;
55689371c9d4SSatish Balay       }
5569e5e52638SMatthew G. Knepley     }
5570e5e52638SMatthew G. Knepley   }
557107218a29SMatthew G. Knepley   if (ds && !*ds) *ds = dsDef;
55723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5573e5e52638SMatthew G. Knepley }
5574e5e52638SMatthew G. Knepley 
5575e5e52638SMatthew G. Knepley /*@
557620f4b53cSBarry Smith   DMGetRegionDS - Get the `PetscDS` for a given mesh region, defined by a `DMLabel`
5577e5e52638SMatthew G. Knepley 
557820f4b53cSBarry Smith   Not Collective
5579e5e52638SMatthew G. Knepley 
5580e5e52638SMatthew G. Knepley   Input Parameters:
558120f4b53cSBarry Smith + dm    - The `DM`
558220f4b53cSBarry Smith - label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh
5583e5e52638SMatthew G. Knepley 
5584b3cf3223SMatthew G. Knepley   Output Parameters:
558520f4b53cSBarry Smith + fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL`
558607218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region, or `NULL`
558707218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input in the given region, or `NULL`
5588e5e52638SMatthew G. Knepley 
5589e5e52638SMatthew G. Knepley   Level: advanced
5590e5e52638SMatthew G. Knepley 
559120f4b53cSBarry Smith   Note:
559220f4b53cSBarry Smith   If a non-`NULL` label is given, but there is no `PetscDS` on that specific label,
559320f4b53cSBarry Smith   the `PetscDS` for the full domain (if present) is returned. Returns with
559407218a29SMatthew G. Knepley   fields = `NULL` and ds = `NULL` if there is no `PetscDS` for the full domain.
559520f4b53cSBarry Smith 
55961cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5597e5e52638SMatthew G. Knepley @*/
559807218a29SMatthew G. Knepley PetscErrorCode DMGetRegionDS(DM dm, DMLabel label, IS *fields, PetscDS *ds, PetscDS *dsIn)
5599d71ae5a4SJacob Faibussowitsch {
5600e5e52638SMatthew G. Knepley   PetscInt Nds = dm->Nds, s;
5601e5e52638SMatthew G. Knepley 
5602e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5603e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5604e5e52638SMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
56059371c9d4SSatish Balay   if (fields) {
56064f572ea9SToby Isaac     PetscAssertPointer(fields, 3);
56079371c9d4SSatish Balay     *fields = NULL;
56089371c9d4SSatish Balay   }
56099371c9d4SSatish Balay   if (ds) {
56104f572ea9SToby Isaac     PetscAssertPointer(ds, 4);
56119371c9d4SSatish Balay     *ds = NULL;
56129371c9d4SSatish Balay   }
561307218a29SMatthew G. Knepley   if (dsIn) {
56144f572ea9SToby Isaac     PetscAssertPointer(dsIn, 5);
561507218a29SMatthew G. Knepley     *dsIn = NULL;
561607218a29SMatthew G. Knepley   }
5617e5e52638SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5618154ca461SJed Brown     if (dm->probs[s].label == label || !dm->probs[s].label) {
5619b3cf3223SMatthew G. Knepley       if (fields) *fields = dm->probs[s].fields;
5620b3cf3223SMatthew G. Knepley       if (ds) *ds = dm->probs[s].ds;
562107218a29SMatthew G. Knepley       if (dsIn) *dsIn = dm->probs[s].dsIn;
56223ba16761SJacob Faibussowitsch       if (dm->probs[s].label) PetscFunctionReturn(PETSC_SUCCESS);
5623b3cf3223SMatthew G. Knepley     }
5624e5e52638SMatthew G. Knepley   }
56253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5626e5e52638SMatthew G. Knepley }
5627e5e52638SMatthew G. Knepley 
5628e5e52638SMatthew G. Knepley /*@
5629bb7acecfSBarry Smith   DMSetRegionDS - Set the `PetscDS` for a given mesh region, defined by a `DMLabel`
5630083401c6SMatthew G. Knepley 
563120f4b53cSBarry Smith   Collective
5632083401c6SMatthew G. Knepley 
5633083401c6SMatthew G. Knepley   Input Parameters:
5634bb7acecfSBarry Smith + dm     - The `DM`
563520f4b53cSBarry Smith . label  - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh
563607218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` for all fields
563707218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region
563807218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS`
5639083401c6SMatthew G. Knepley 
564020f4b53cSBarry Smith   Level: advanced
564120f4b53cSBarry Smith 
5642bb7acecfSBarry Smith   Note:
5643bb7acecfSBarry Smith   If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`. If the `PetscDS` is replaced,
5644083401c6SMatthew G. Knepley   the fields argument is ignored.
5645083401c6SMatthew G. Knepley 
56461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionNumDS()`, `DMGetDS()`, `DMGetCellDS()`
5647083401c6SMatthew G. Knepley @*/
564807218a29SMatthew G. Knepley PetscErrorCode DMSetRegionDS(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn)
5649d71ae5a4SJacob Faibussowitsch {
5650083401c6SMatthew G. Knepley   PetscInt Nds = dm->Nds, s;
5651083401c6SMatthew G. Knepley 
5652083401c6SMatthew G. Knepley   PetscFunctionBegin;
5653083401c6SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5654083401c6SMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
565507218a29SMatthew G. Knepley   if (fields) PetscValidHeaderSpecific(fields, IS_CLASSID, 3);
5656064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 4);
565707218a29SMatthew G. Knepley   if (dsIn) PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 5);
5658083401c6SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5659083401c6SMatthew G. Knepley     if (dm->probs[s].label == label) {
56609566063dSJacob Faibussowitsch       PetscCall(PetscDSDestroy(&dm->probs[s].ds));
566107218a29SMatthew G. Knepley       PetscCall(PetscDSDestroy(&dm->probs[s].dsIn));
5662083401c6SMatthew G. Knepley       dm->probs[s].ds   = ds;
566307218a29SMatthew G. Knepley       dm->probs[s].dsIn = dsIn;
56643ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
5665083401c6SMatthew G. Knepley     }
5666083401c6SMatthew G. Knepley   }
56679566063dSJacob Faibussowitsch   PetscCall(DMDSEnlarge_Static(dm, Nds + 1));
56689566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
56699566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)fields));
56709566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)ds));
567107218a29SMatthew G. Knepley   PetscCall(PetscObjectReference((PetscObject)dsIn));
5672083401c6SMatthew G. Knepley   if (!label) {
5673083401c6SMatthew G. Knepley     /* Put the NULL label at the front, so it is returned as the default */
5674083401c6SMatthew G. Knepley     for (s = Nds - 1; s >= 0; --s) dm->probs[s + 1] = dm->probs[s];
5675083401c6SMatthew G. Knepley     Nds = 0;
5676083401c6SMatthew G. Knepley   }
5677083401c6SMatthew G. Knepley   dm->probs[Nds].label  = label;
5678083401c6SMatthew G. Knepley   dm->probs[Nds].fields = fields;
5679083401c6SMatthew G. Knepley   dm->probs[Nds].ds     = ds;
568007218a29SMatthew G. Knepley   dm->probs[Nds].dsIn   = dsIn;
56813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5682083401c6SMatthew G. Knepley }
5683083401c6SMatthew G. Knepley 
5684083401c6SMatthew G. Knepley /*@
568520f4b53cSBarry Smith   DMGetRegionNumDS - Get the `PetscDS` for a given mesh region, defined by the region number
5686e5e52638SMatthew G. Knepley 
568720f4b53cSBarry Smith   Not Collective
5688e5e52638SMatthew G. Knepley 
5689e5e52638SMatthew G. Knepley   Input Parameters:
569020f4b53cSBarry Smith + dm  - The `DM`
5691e5e52638SMatthew G. Knepley - num - The region number, in [0, Nds)
5692e5e52638SMatthew G. Knepley 
5693e5e52638SMatthew G. Knepley   Output Parameters:
569420f4b53cSBarry Smith + label  - The region label, or `NULL`
569520f4b53cSBarry Smith . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL`
569607218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region, or `NULL`
569707218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input in the given region, or `NULL`
5698e5e52638SMatthew G. Knepley 
5699e5e52638SMatthew G. Knepley   Level: advanced
5700e5e52638SMatthew G. Knepley 
57011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5702e5e52638SMatthew G. Knepley @*/
570307218a29SMatthew G. Knepley PetscErrorCode DMGetRegionNumDS(DM dm, PetscInt num, DMLabel *label, IS *fields, PetscDS *ds, PetscDS *dsIn)
5704d71ae5a4SJacob Faibussowitsch {
5705e5e52638SMatthew G. Knepley   PetscInt Nds;
5706e5e52638SMatthew G. Knepley 
5707e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5708e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
57099566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
571063a3b9bcSJacob Faibussowitsch   PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds);
5711e5e52638SMatthew G. Knepley   if (label) {
57124f572ea9SToby Isaac     PetscAssertPointer(label, 3);
5713e5e52638SMatthew G. Knepley     *label = dm->probs[num].label;
5714e5e52638SMatthew G. Knepley   }
5715b3cf3223SMatthew G. Knepley   if (fields) {
57164f572ea9SToby Isaac     PetscAssertPointer(fields, 4);
5717b3cf3223SMatthew G. Knepley     *fields = dm->probs[num].fields;
5718b3cf3223SMatthew G. Knepley   }
5719e5e52638SMatthew G. Knepley   if (ds) {
57204f572ea9SToby Isaac     PetscAssertPointer(ds, 5);
5721e5e52638SMatthew G. Knepley     *ds = dm->probs[num].ds;
5722e5e52638SMatthew G. Knepley   }
572307218a29SMatthew G. Knepley   if (dsIn) {
57244f572ea9SToby Isaac     PetscAssertPointer(dsIn, 6);
572507218a29SMatthew G. Knepley     *dsIn = dm->probs[num].dsIn;
572607218a29SMatthew G. Knepley   }
57273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5728e5e52638SMatthew G. Knepley }
5729e5e52638SMatthew G. Knepley 
5730e5e52638SMatthew G. Knepley /*@
573120f4b53cSBarry Smith   DMSetRegionNumDS - Set the `PetscDS` for a given mesh region, defined by the region number
5732e5e52638SMatthew G. Knepley 
573320f4b53cSBarry Smith   Not Collective
5734e5e52638SMatthew G. Knepley 
5735e5e52638SMatthew G. Knepley   Input Parameters:
573620f4b53cSBarry Smith + dm     - The `DM`
5737083401c6SMatthew G. Knepley . num    - The region number, in [0, Nds)
573820f4b53cSBarry Smith . label  - The region label, or `NULL`
573907218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` to prevent setting
574007218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region, or `NULL` to prevent setting
574107218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS`
5742e5e52638SMatthew G. Knepley 
5743e5e52638SMatthew G. Knepley   Level: advanced
5744e5e52638SMatthew G. Knepley 
57451cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5746e5e52638SMatthew G. Knepley @*/
574707218a29SMatthew G. Knepley PetscErrorCode DMSetRegionNumDS(DM dm, PetscInt num, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn)
5748d71ae5a4SJacob Faibussowitsch {
5749083401c6SMatthew G. Knepley   PetscInt Nds;
5750e5e52638SMatthew G. Knepley 
5751e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5752e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5753ad540459SPierre Jolivet   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3);
57549566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
575563a3b9bcSJacob Faibussowitsch   PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds);
57569566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
57579566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&dm->probs[num].label));
5758083401c6SMatthew G. Knepley   dm->probs[num].label = label;
5759083401c6SMatthew G. Knepley   if (fields) {
5760083401c6SMatthew G. Knepley     PetscValidHeaderSpecific(fields, IS_CLASSID, 4);
57619566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)fields));
57629566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&dm->probs[num].fields));
5763083401c6SMatthew G. Knepley     dm->probs[num].fields = fields;
5764e5e52638SMatthew G. Knepley   }
5765083401c6SMatthew G. Knepley   if (ds) {
5766083401c6SMatthew G. Knepley     PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 5);
57679566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)ds));
57689566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dm->probs[num].ds));
5769083401c6SMatthew G. Knepley     dm->probs[num].ds = ds;
5770083401c6SMatthew G. Knepley   }
577107218a29SMatthew G. Knepley   if (dsIn) {
577207218a29SMatthew G. Knepley     PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 6);
577307218a29SMatthew G. Knepley     PetscCall(PetscObjectReference((PetscObject)dsIn));
577407218a29SMatthew G. Knepley     PetscCall(PetscDSDestroy(&dm->probs[num].dsIn));
577507218a29SMatthew G. Knepley     dm->probs[num].dsIn = dsIn;
577607218a29SMatthew G. Knepley   }
57773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5778e5e52638SMatthew G. Knepley }
5779e5e52638SMatthew G. Knepley 
5780e5e52638SMatthew G. Knepley /*@
578120f4b53cSBarry Smith   DMFindRegionNum - Find the region number for a given `PetscDS`, or -1 if it is not found.
57821d3af9e0SMatthew G. Knepley 
578320f4b53cSBarry Smith   Not Collective
57841d3af9e0SMatthew G. Knepley 
57851d3af9e0SMatthew G. Knepley   Input Parameters:
578620f4b53cSBarry Smith + dm - The `DM`
578720f4b53cSBarry Smith - ds - The `PetscDS` defined on the given region
57881d3af9e0SMatthew G. Knepley 
57891d3af9e0SMatthew G. Knepley   Output Parameter:
57901d3af9e0SMatthew G. Knepley . num - The region number, in [0, Nds), or -1 if not found
57911d3af9e0SMatthew G. Knepley 
57921d3af9e0SMatthew G. Knepley   Level: advanced
57931d3af9e0SMatthew G. Knepley 
57941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
57951d3af9e0SMatthew G. Knepley @*/
5796d71ae5a4SJacob Faibussowitsch PetscErrorCode DMFindRegionNum(DM dm, PetscDS ds, PetscInt *num)
5797d71ae5a4SJacob Faibussowitsch {
57981d3af9e0SMatthew G. Knepley   PetscInt Nds, n;
57991d3af9e0SMatthew G. Knepley 
58001d3af9e0SMatthew G. Knepley   PetscFunctionBegin;
58011d3af9e0SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
58021d3af9e0SMatthew G. Knepley   PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 2);
58034f572ea9SToby Isaac   PetscAssertPointer(num, 3);
58049566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
58059371c9d4SSatish Balay   for (n = 0; n < Nds; ++n)
58069371c9d4SSatish Balay     if (ds == dm->probs[n].ds) break;
58071d3af9e0SMatthew G. Knepley   if (n >= Nds) *num = -1;
58081d3af9e0SMatthew G. Knepley   else *num = n;
58093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
58101d3af9e0SMatthew G. Knepley }
58111d3af9e0SMatthew G. Knepley 
5812cc4c1da9SBarry Smith /*@
5813bb7acecfSBarry Smith   DMCreateFEDefault - Create a `PetscFE` based on the celltype for the mesh
58142df84da0SMatthew G. Knepley 
581520f4b53cSBarry Smith   Not Collective
58162df84da0SMatthew G. Knepley 
5817f1a722f8SMatthew G. Knepley   Input Parameters:
5818bb7acecfSBarry Smith + dm     - The `DM`
58192df84da0SMatthew G. Knepley . Nc     - The number of components for the field
582020f4b53cSBarry Smith . prefix - The options prefix for the output `PetscFE`, or `NULL`
5821bb7acecfSBarry Smith - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree
58222df84da0SMatthew G. Knepley 
58232df84da0SMatthew G. Knepley   Output Parameter:
5824bb7acecfSBarry Smith . fem - The `PetscFE`
58252df84da0SMatthew G. Knepley 
582620f4b53cSBarry Smith   Level: intermediate
582720f4b53cSBarry Smith 
5828bb7acecfSBarry Smith   Note:
5829bb7acecfSBarry Smith   This is a convenience method that just calls `PetscFECreateByCell()` underneath.
58302df84da0SMatthew G. Knepley 
58311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscFECreateByCell()`, `DMAddField()`, `DMCreateDS()`, `DMGetCellDS()`, `DMGetRegionDS()`
58322df84da0SMatthew G. Knepley @*/
5833d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFEDefault(DM dm, PetscInt Nc, const char prefix[], PetscInt qorder, PetscFE *fem)
5834d71ae5a4SJacob Faibussowitsch {
58352df84da0SMatthew G. Knepley   DMPolytopeType ct;
58362df84da0SMatthew G. Knepley   PetscInt       dim, cStart;
58372df84da0SMatthew G. Knepley 
58382df84da0SMatthew G. Knepley   PetscFunctionBegin;
58392df84da0SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
58402df84da0SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, Nc, 2);
58414f572ea9SToby Isaac   if (prefix) PetscAssertPointer(prefix, 3);
58422df84da0SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, qorder, 4);
58434f572ea9SToby Isaac   PetscAssertPointer(fem, 5);
58449566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
58459566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL));
58469566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCellType(dm, cStart, &ct));
58479566063dSJacob Faibussowitsch   PetscCall(PetscFECreateByCell(PETSC_COMM_SELF, dim, Nc, ct, prefix, qorder, fem));
58483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
58492df84da0SMatthew G. Knepley }
58502df84da0SMatthew G. Knepley 
58511d3af9e0SMatthew G. Knepley /*@
5852bb7acecfSBarry Smith   DMCreateDS - Create the discrete systems for the `DM` based upon the fields added to the `DM`
5853e5e52638SMatthew G. Knepley 
585420f4b53cSBarry Smith   Collective
5855e5e52638SMatthew G. Knepley 
5856e5e52638SMatthew G. Knepley   Input Parameter:
5857bb7acecfSBarry Smith . dm - The `DM`
5858e5e52638SMatthew G. Knepley 
585920f4b53cSBarry Smith   Options Database Key:
5860bb7acecfSBarry Smith . -dm_petscds_view - View all the `PetscDS` objects in this `DM`
586145480ffeSMatthew G. Knepley 
586220f4b53cSBarry Smith   Level: intermediate
586320f4b53cSBarry Smith 
58641cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetField`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`
5865e5e52638SMatthew G. Knepley @*/
5866d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDS(DM dm)
5867d71ae5a4SJacob Faibussowitsch {
5868e5e52638SMatthew G. Knepley   MPI_Comm  comm;
5869083401c6SMatthew G. Knepley   PetscDS   dsDef;
5870083401c6SMatthew G. Knepley   DMLabel  *labelSet;
5871f9244615SMatthew G. Knepley   PetscInt  dE, Nf = dm->Nf, f, s, Nl, l, Ndef, k;
5872f9244615SMatthew G. Knepley   PetscBool doSetup = PETSC_TRUE, flg;
5873e5e52638SMatthew G. Knepley 
5874e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5875e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
58763ba16761SJacob Faibussowitsch   if (!dm->fields) PetscFunctionReturn(PETSC_SUCCESS);
58779566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
58789566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dE));
5879083401c6SMatthew G. Knepley   /* Determine how many regions we have */
58809566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Nf, &labelSet));
5881083401c6SMatthew G. Knepley   Nl   = 0;
5882083401c6SMatthew G. Knepley   Ndef = 0;
5883083401c6SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
5884083401c6SMatthew G. Knepley     DMLabel  label = dm->fields[f].label;
5885083401c6SMatthew G. Knepley     PetscInt l;
5886083401c6SMatthew G. Knepley 
5887f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED
5888f918ec44SMatthew G. Knepley     /* Move CEED context to discretizations */
5889f918ec44SMatthew G. Knepley     {
5890f918ec44SMatthew G. Knepley       PetscClassId id;
5891f918ec44SMatthew G. Knepley 
58929566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(dm->fields[f].disc, &id));
5893f918ec44SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
5894f918ec44SMatthew G. Knepley         Ceed ceed;
5895f918ec44SMatthew G. Knepley 
58969566063dSJacob Faibussowitsch         PetscCall(DMGetCeed(dm, &ceed));
58979566063dSJacob Faibussowitsch         PetscCall(PetscFESetCeed((PetscFE)dm->fields[f].disc, ceed));
5898f918ec44SMatthew G. Knepley       }
5899f918ec44SMatthew G. Knepley     }
5900f918ec44SMatthew G. Knepley #endif
59019371c9d4SSatish Balay     if (!label) {
59029371c9d4SSatish Balay       ++Ndef;
59039371c9d4SSatish Balay       continue;
59049371c9d4SSatish Balay     }
59059371c9d4SSatish Balay     for (l = 0; l < Nl; ++l)
59069371c9d4SSatish Balay       if (label == labelSet[l]) break;
5907083401c6SMatthew G. Knepley     if (l < Nl) continue;
5908083401c6SMatthew G. Knepley     labelSet[Nl++] = label;
5909083401c6SMatthew G. Knepley   }
5910083401c6SMatthew G. Knepley   /* Create default DS if there are no labels to intersect with */
591107218a29SMatthew G. Knepley   PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL));
5912083401c6SMatthew G. Knepley   if (!dsDef && Ndef && !Nl) {
5913b3cf3223SMatthew G. Knepley     IS        fields;
5914b3cf3223SMatthew G. Knepley     PetscInt *fld, nf;
5915b3cf3223SMatthew G. Knepley 
59169371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
59179371c9d4SSatish Balay       if (!dm->fields[f].label) ++nf;
59187a8be351SBarry Smith     PetscCheck(nf, comm, PETSC_ERR_PLIB, "All fields have labels, but we are trying to create a default DS");
59199566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nf, &fld));
59209371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
59219371c9d4SSatish Balay       if (!dm->fields[f].label) fld[nf++] = f;
59229566063dSJacob Faibussowitsch     PetscCall(ISCreate(PETSC_COMM_SELF, &fields));
59239566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_"));
59249566063dSJacob Faibussowitsch     PetscCall(ISSetType(fields, ISGENERAL));
59259566063dSJacob Faibussowitsch     PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER));
592688f0c812SMatthew G. Knepley 
59279566063dSJacob Faibussowitsch     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef));
592807218a29SMatthew G. Knepley     PetscCall(DMSetRegionDS(dm, NULL, fields, dsDef, NULL));
59299566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dsDef));
59309566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&fields));
59312df9ee95SMatthew G. Knepley   }
593207218a29SMatthew G. Knepley   PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL));
59339566063dSJacob Faibussowitsch   if (dsDef) PetscCall(PetscDSSetCoordinateDimension(dsDef, dE));
5934083401c6SMatthew G. Knepley   /* Intersect labels with default fields */
5935083401c6SMatthew G. Knepley   if (Ndef && Nl) {
59360122748bSMatthew G. Knepley     DM              plex;
5937083401c6SMatthew G. Knepley     DMLabel         cellLabel;
5938083401c6SMatthew G. Knepley     IS              fieldIS, allcellIS, defcellIS = NULL;
5939083401c6SMatthew G. Knepley     PetscInt       *fields;
5940083401c6SMatthew G. Knepley     const PetscInt *cells;
5941083401c6SMatthew G. Knepley     PetscInt        depth, nf = 0, n, c;
59420122748bSMatthew G. Knepley 
59439566063dSJacob Faibussowitsch     PetscCall(DMConvert(dm, DMPLEX, &plex));
59449566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepth(plex, &depth));
59459566063dSJacob Faibussowitsch     PetscCall(DMGetStratumIS(plex, "dim", depth, &allcellIS));
59469566063dSJacob Faibussowitsch     if (!allcellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &allcellIS));
59475fedec97SMatthew G. Knepley     /* TODO This looks like it only works for one label */
5948083401c6SMatthew G. Knepley     for (l = 0; l < Nl; ++l) {
5949083401c6SMatthew G. Knepley       DMLabel label = labelSet[l];
5950083401c6SMatthew G. Knepley       IS      pointIS;
5951083401c6SMatthew G. Knepley 
59529566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&defcellIS));
59539566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(label, 1, &pointIS));
59549566063dSJacob Faibussowitsch       PetscCall(ISDifference(allcellIS, pointIS, &defcellIS));
59559566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
5956083401c6SMatthew G. Knepley     }
59579566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&allcellIS));
5958083401c6SMatthew G. Knepley 
59599566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, "defaultCells", &cellLabel));
59609566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(defcellIS, &n));
59619566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(defcellIS, &cells));
59629566063dSJacob Faibussowitsch     for (c = 0; c < n; ++c) PetscCall(DMLabelSetValue(cellLabel, cells[c], 1));
59639566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(defcellIS, &cells));
59649566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&defcellIS));
59659566063dSJacob Faibussowitsch     PetscCall(DMPlexLabelComplete(plex, cellLabel));
5966083401c6SMatthew G. Knepley 
59679566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Ndef, &fields));
59689371c9d4SSatish Balay     for (f = 0; f < Nf; ++f)
59699371c9d4SSatish Balay       if (!dm->fields[f].label) fields[nf++] = f;
59709566063dSJacob Faibussowitsch     PetscCall(ISCreate(PETSC_COMM_SELF, &fieldIS));
59719566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fieldIS, "dm_fields_"));
59729566063dSJacob Faibussowitsch     PetscCall(ISSetType(fieldIS, ISGENERAL));
59739566063dSJacob Faibussowitsch     PetscCall(ISGeneralSetIndices(fieldIS, nf, fields, PETSC_OWN_POINTER));
5974083401c6SMatthew G. Knepley 
59759566063dSJacob Faibussowitsch     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef));
597607218a29SMatthew G. Knepley     PetscCall(DMSetRegionDS(dm, cellLabel, fieldIS, dsDef, NULL));
59779566063dSJacob Faibussowitsch     PetscCall(PetscDSSetCoordinateDimension(dsDef, dE));
59789566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&cellLabel));
59799566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dsDef));
59809566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&fieldIS));
59819566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&plex));
5982083401c6SMatthew G. Knepley   }
5983083401c6SMatthew G. Knepley   /* Create label DSes
5984083401c6SMatthew G. Knepley      - WE ONLY SUPPORT IDENTICAL OR DISJOINT LABELS
5985083401c6SMatthew G. Knepley   */
5986083401c6SMatthew G. Knepley   /* TODO Should check that labels are disjoint */
5987083401c6SMatthew G. Knepley   for (l = 0; l < Nl; ++l) {
5988083401c6SMatthew G. Knepley     DMLabel   label = labelSet[l];
598907218a29SMatthew G. Knepley     PetscDS   ds, dsIn = NULL;
5990083401c6SMatthew G. Knepley     IS        fields;
5991083401c6SMatthew G. Knepley     PetscInt *fld, nf;
5992083401c6SMatthew G. Knepley 
59939566063dSJacob Faibussowitsch     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds));
59949371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
59959371c9d4SSatish Balay       if (label == dm->fields[f].label || !dm->fields[f].label) ++nf;
59969566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nf, &fld));
59979371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
59989371c9d4SSatish Balay       if (label == dm->fields[f].label || !dm->fields[f].label) fld[nf++] = f;
59999566063dSJacob Faibussowitsch     PetscCall(ISCreate(PETSC_COMM_SELF, &fields));
60009566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_"));
60019566063dSJacob Faibussowitsch     PetscCall(ISSetType(fields, ISGENERAL));
60029566063dSJacob Faibussowitsch     PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER));
60039566063dSJacob Faibussowitsch     PetscCall(PetscDSSetCoordinateDimension(ds, dE));
6004083401c6SMatthew G. Knepley     {
6005083401c6SMatthew G. Knepley       DMPolytopeType ct;
6006083401c6SMatthew G. Knepley       PetscInt       lStart, lEnd;
60075fedec97SMatthew G. Knepley       PetscBool      isCohesiveLocal = PETSC_FALSE, isCohesive;
60080122748bSMatthew G. Knepley 
60099566063dSJacob Faibussowitsch       PetscCall(DMLabelGetBounds(label, &lStart, &lEnd));
6010665f567fSMatthew G. Knepley       if (lStart >= 0) {
60119566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCellType(dm, lStart, &ct));
6012412e9a14SMatthew G. Knepley         switch (ct) {
6013412e9a14SMatthew G. Knepley         case DM_POLYTOPE_POINT_PRISM_TENSOR:
6014412e9a14SMatthew G. Knepley         case DM_POLYTOPE_SEG_PRISM_TENSOR:
6015412e9a14SMatthew G. Knepley         case DM_POLYTOPE_TRI_PRISM_TENSOR:
6016d71ae5a4SJacob Faibussowitsch         case DM_POLYTOPE_QUAD_PRISM_TENSOR:
6017d71ae5a4SJacob Faibussowitsch           isCohesiveLocal = PETSC_TRUE;
6018d71ae5a4SJacob Faibussowitsch           break;
6019d71ae5a4SJacob Faibussowitsch         default:
6020d71ae5a4SJacob Faibussowitsch           break;
6021412e9a14SMatthew G. Knepley         }
6022665f567fSMatthew G. Knepley       }
6023712fec58SPierre Jolivet       PetscCall(MPIU_Allreduce(&isCohesiveLocal, &isCohesive, 1, MPIU_BOOL, MPI_LOR, comm));
602407218a29SMatthew G. Knepley       if (isCohesive) {
602507218a29SMatthew G. Knepley         PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsIn));
602607218a29SMatthew G. Knepley         PetscCall(PetscDSSetCoordinateDimension(dsIn, dE));
602707218a29SMatthew G. Knepley       }
60285fedec97SMatthew G. Knepley       for (f = 0, nf = 0; f < Nf; ++f) {
60295fedec97SMatthew G. Knepley         if (label == dm->fields[f].label || !dm->fields[f].label) {
60305fedec97SMatthew G. Knepley           if (label == dm->fields[f].label) {
60319566063dSJacob Faibussowitsch             PetscCall(PetscDSSetDiscretization(ds, nf, NULL));
60329566063dSJacob Faibussowitsch             PetscCall(PetscDSSetCohesive(ds, nf, isCohesive));
603307218a29SMatthew G. Knepley             if (dsIn) {
603407218a29SMatthew G. Knepley               PetscCall(PetscDSSetDiscretization(dsIn, nf, NULL));
603507218a29SMatthew G. Knepley               PetscCall(PetscDSSetCohesive(dsIn, nf, isCohesive));
603607218a29SMatthew G. Knepley             }
60375fedec97SMatthew G. Knepley           }
60385fedec97SMatthew G. Knepley           ++nf;
60395fedec97SMatthew G. Knepley         }
60405fedec97SMatthew G. Knepley       }
6041e5e52638SMatthew G. Knepley     }
604207218a29SMatthew G. Knepley     PetscCall(DMSetRegionDS(dm, label, fields, ds, dsIn));
604307218a29SMatthew G. Knepley     PetscCall(ISDestroy(&fields));
60449566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&ds));
604507218a29SMatthew G. Knepley     PetscCall(PetscDSDestroy(&dsIn));
6046e5e52638SMatthew G. Knepley   }
60479566063dSJacob Faibussowitsch   PetscCall(PetscFree(labelSet));
6048e5e52638SMatthew G. Knepley   /* Set fields in DSes */
6049083401c6SMatthew G. Knepley   for (s = 0; s < dm->Nds; ++s) {
6050083401c6SMatthew G. Knepley     PetscDS         ds     = dm->probs[s].ds;
605107218a29SMatthew G. Knepley     PetscDS         dsIn   = dm->probs[s].dsIn;
6052083401c6SMatthew G. Knepley     IS              fields = dm->probs[s].fields;
6053083401c6SMatthew G. Knepley     const PetscInt *fld;
60545fedec97SMatthew G. Knepley     PetscInt        nf, dsnf;
60555fedec97SMatthew G. Knepley     PetscBool       isCohesive;
6056e5e52638SMatthew G. Knepley 
60579566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsnf));
60589566063dSJacob Faibussowitsch     PetscCall(PetscDSIsCohesive(ds, &isCohesive));
60599566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(fields, &nf));
60609566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(fields, &fld));
6061083401c6SMatthew G. Knepley     for (f = 0; f < nf; ++f) {
6062083401c6SMatthew G. Knepley       PetscObject  disc = dm->fields[fld[f]].disc;
60635fedec97SMatthew G. Knepley       PetscBool    isCohesiveField;
6064e5e52638SMatthew G. Knepley       PetscClassId id;
6065e5e52638SMatthew G. Knepley 
60665fedec97SMatthew G. Knepley       /* Handle DS with no fields */
60679566063dSJacob Faibussowitsch       if (dsnf) PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField));
60685fedec97SMatthew G. Knepley       /* If this is a cohesive cell, then regular fields need the lower dimensional discretization */
606907218a29SMatthew G. Knepley       if (isCohesive) {
607007218a29SMatthew G. Knepley         if (!isCohesiveField) {
607107218a29SMatthew G. Knepley           PetscObject bdDisc;
607207218a29SMatthew G. Knepley 
607307218a29SMatthew G. Knepley           PetscCall(PetscFEGetHeightSubspace((PetscFE)disc, 1, (PetscFE *)&bdDisc));
607407218a29SMatthew G. Knepley           PetscCall(PetscDSSetDiscretization(ds, f, bdDisc));
607507218a29SMatthew G. Knepley           PetscCall(PetscDSSetDiscretization(dsIn, f, disc));
607607218a29SMatthew G. Knepley         } else {
60779566063dSJacob Faibussowitsch           PetscCall(PetscDSSetDiscretization(ds, f, disc));
607807218a29SMatthew G. Knepley           PetscCall(PetscDSSetDiscretization(dsIn, f, disc));
607907218a29SMatthew G. Knepley         }
608007218a29SMatthew G. Knepley       } else {
608107218a29SMatthew G. Knepley         PetscCall(PetscDSSetDiscretization(ds, f, disc));
608207218a29SMatthew G. Knepley       }
6083083401c6SMatthew G. Knepley       /* We allow people to have placeholder fields and construct the Section by hand */
60849566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(disc, &id));
6085e5e52638SMatthew G. Knepley       if ((id != PETSCFE_CLASSID) && (id != PETSCFV_CLASSID)) doSetup = PETSC_FALSE;
6086e5e52638SMatthew G. Knepley     }
60879566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(fields, &fld));
6088e5e52638SMatthew G. Knepley   }
6089f9244615SMatthew G. Knepley   /* Allow k-jet tabulation */
60909566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)dm)->prefix, "-dm_ds_jet_degree", &k, &flg));
6091f9244615SMatthew G. Knepley   if (flg) {
60923b4aee56SMatthew G. Knepley     for (s = 0; s < dm->Nds; ++s) {
60933b4aee56SMatthew G. Knepley       PetscDS  ds   = dm->probs[s].ds;
609407218a29SMatthew G. Knepley       PetscDS  dsIn = dm->probs[s].dsIn;
60953b4aee56SMatthew G. Knepley       PetscInt Nf, f;
60963b4aee56SMatthew G. Knepley 
60979566063dSJacob Faibussowitsch       PetscCall(PetscDSGetNumFields(ds, &Nf));
609807218a29SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
609907218a29SMatthew G. Knepley         PetscCall(PetscDSSetJetDegree(ds, f, k));
610007218a29SMatthew G. Knepley         if (dsIn) PetscCall(PetscDSSetJetDegree(dsIn, f, k));
610107218a29SMatthew G. Knepley       }
61023b4aee56SMatthew G. Knepley     }
6103f9244615SMatthew G. Knepley   }
6104e5e52638SMatthew G. Knepley   /* Setup DSes */
6105e5e52638SMatthew G. Knepley   if (doSetup) {
610607218a29SMatthew G. Knepley     for (s = 0; s < dm->Nds; ++s) {
6107cf1363e4SMatthew G. Knepley       if (dm->setfromoptionscalled) {
6108cf1363e4SMatthew G. Knepley         PetscCall(PetscDSSetFromOptions(dm->probs[s].ds));
6109cf1363e4SMatthew G. Knepley         if (dm->probs[s].dsIn) PetscCall(PetscDSSetFromOptions(dm->probs[s].dsIn));
6110cf1363e4SMatthew G. Knepley       }
611107218a29SMatthew G. Knepley       PetscCall(PetscDSSetUp(dm->probs[s].ds));
611207218a29SMatthew G. Knepley       if (dm->probs[s].dsIn) PetscCall(PetscDSSetUp(dm->probs[s].dsIn));
611307218a29SMatthew G. Knepley     }
6114e5e52638SMatthew G. Knepley   }
61153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6116e5e52638SMatthew G. Knepley }
6117e5e52638SMatthew G. Knepley 
6118e5e52638SMatthew G. Knepley /*@
6119d2b2dc1eSMatthew G. Knepley   DMUseTensorOrder - Use a tensor product closure ordering for the default section
6120d2b2dc1eSMatthew G. Knepley 
6121d2b2dc1eSMatthew G. Knepley   Input Parameters:
6122d2b2dc1eSMatthew G. Knepley + dm     - The DM
6123d2b2dc1eSMatthew G. Knepley - tensor - Flag for tensor order
6124d2b2dc1eSMatthew G. Knepley 
6125d2b2dc1eSMatthew G. Knepley   Level: developer
6126d2b2dc1eSMatthew G. Knepley 
6127d2b2dc1eSMatthew G. Knepley .seealso: `DMPlexSetClosurePermutationTensor()`, `PetscSectionResetClosurePermutation()`
6128d2b2dc1eSMatthew G. Knepley @*/
6129d2b2dc1eSMatthew G. Knepley PetscErrorCode DMUseTensorOrder(DM dm, PetscBool tensor)
6130d2b2dc1eSMatthew G. Knepley {
6131d2b2dc1eSMatthew G. Knepley   PetscInt  Nf;
6132d2b2dc1eSMatthew G. Knepley   PetscBool reorder = PETSC_TRUE, isPlex;
6133d2b2dc1eSMatthew G. Knepley 
6134d2b2dc1eSMatthew G. Knepley   PetscFunctionBegin;
6135d2b2dc1eSMatthew G. Knepley   PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex));
6136d2b2dc1eSMatthew G. Knepley   PetscCall(DMGetNumFields(dm, &Nf));
6137d2b2dc1eSMatthew G. Knepley   for (PetscInt f = 0; f < Nf; ++f) {
6138d2b2dc1eSMatthew G. Knepley     PetscObject  obj;
6139d2b2dc1eSMatthew G. Knepley     PetscClassId id;
6140d2b2dc1eSMatthew G. Knepley 
6141d2b2dc1eSMatthew G. Knepley     PetscCall(DMGetField(dm, f, NULL, &obj));
6142d2b2dc1eSMatthew G. Knepley     PetscCall(PetscObjectGetClassId(obj, &id));
6143d2b2dc1eSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
6144d2b2dc1eSMatthew G. Knepley       PetscSpace sp;
6145d2b2dc1eSMatthew G. Knepley       PetscBool  tensor;
6146d2b2dc1eSMatthew G. Knepley 
6147d2b2dc1eSMatthew G. Knepley       PetscCall(PetscFEGetBasisSpace((PetscFE)obj, &sp));
6148d2b2dc1eSMatthew G. Knepley       PetscCall(PetscSpacePolynomialGetTensor(sp, &tensor));
6149d2b2dc1eSMatthew G. Knepley       reorder = reorder && tensor ? PETSC_TRUE : PETSC_FALSE;
6150d2b2dc1eSMatthew G. Knepley     } else reorder = PETSC_FALSE;
6151d2b2dc1eSMatthew G. Knepley   }
6152d2b2dc1eSMatthew G. Knepley   if (tensor) {
6153d2b2dc1eSMatthew G. Knepley     if (reorder && isPlex) PetscCall(DMPlexSetClosurePermutationTensor(dm, PETSC_DETERMINE, NULL));
6154d2b2dc1eSMatthew G. Knepley   } else {
6155d2b2dc1eSMatthew G. Knepley     PetscSection s;
6156d2b2dc1eSMatthew G. Knepley 
6157d2b2dc1eSMatthew G. Knepley     PetscCall(DMGetLocalSection(dm, &s));
6158d2b2dc1eSMatthew G. Knepley     if (s) PetscCall(PetscSectionResetClosurePermutation(s));
6159d2b2dc1eSMatthew G. Knepley   }
6160d2b2dc1eSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
6161d2b2dc1eSMatthew G. Knepley }
6162d2b2dc1eSMatthew G. Knepley 
6163d2b2dc1eSMatthew G. Knepley /*@
6164bb7acecfSBarry Smith   DMComputeExactSolution - Compute the exact solution for a given `DM`, using the `PetscDS` information.
61657f96f943SMatthew G. Knepley 
616620f4b53cSBarry Smith   Collective
6167f2cacb80SMatthew G. Knepley 
61687f96f943SMatthew G. Knepley   Input Parameters:
6169bb7acecfSBarry Smith + dm   - The `DM`
61707f96f943SMatthew G. Knepley - time - The time
61717f96f943SMatthew G. Knepley 
61727f96f943SMatthew G. Knepley   Output Parameters:
617320f4b53cSBarry Smith + u   - The vector will be filled with exact solution values, or `NULL`
617420f4b53cSBarry Smith - u_t - The vector will be filled with the time derivative of exact solution values, or `NULL`
617520f4b53cSBarry Smith 
617620f4b53cSBarry Smith   Level: developer
61777f96f943SMatthew G. Knepley 
6178bb7acecfSBarry Smith   Note:
6179bb7acecfSBarry Smith   The user must call `PetscDSSetExactSolution()` before using this routine
61807f96f943SMatthew G. Knepley 
61811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscDSSetExactSolution()`
61827f96f943SMatthew G. Knepley @*/
6183d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeExactSolution(DM dm, PetscReal time, Vec u, Vec u_t)
6184d71ae5a4SJacob Faibussowitsch {
61857f96f943SMatthew G. Knepley   PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx);
61867f96f943SMatthew G. Knepley   void   **ectxs;
6187f60fa741SMatthew G. Knepley   Vec      locu, locu_t;
61887f96f943SMatthew G. Knepley   PetscInt Nf, Nds, s;
61897f96f943SMatthew G. Knepley 
61907f96f943SMatthew G. Knepley   PetscFunctionBegin;
6191f2cacb80SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6192f60fa741SMatthew G. Knepley   if (u) {
6193f60fa741SMatthew G. Knepley     PetscValidHeaderSpecific(u, VEC_CLASSID, 3);
6194f60fa741SMatthew G. Knepley     PetscCall(DMGetLocalVector(dm, &locu));
6195f60fa741SMatthew G. Knepley     PetscCall(VecSet(locu, 0.));
6196f60fa741SMatthew G. Knepley   }
6197f60fa741SMatthew G. Knepley   if (u_t) {
6198f60fa741SMatthew G. Knepley     PetscValidHeaderSpecific(u_t, VEC_CLASSID, 4);
6199f60fa741SMatthew G. Knepley     PetscCall(DMGetLocalVector(dm, &locu_t));
6200f60fa741SMatthew G. Knepley     PetscCall(VecSet(locu_t, 0.));
6201f60fa741SMatthew G. Knepley   }
62029566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
62039566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(Nf, &exacts, Nf, &ectxs));
62049566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
62057f96f943SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
62067f96f943SMatthew G. Knepley     PetscDS         ds;
62077f96f943SMatthew G. Knepley     DMLabel         label;
62087f96f943SMatthew G. Knepley     IS              fieldIS;
62097f96f943SMatthew G. Knepley     const PetscInt *fields, id = 1;
62107f96f943SMatthew G. Knepley     PetscInt        dsNf, f;
62117f96f943SMatthew G. Knepley 
621207218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL));
62139566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsNf));
62149566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(fieldIS, &fields));
62159566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(exacts, Nf));
62169566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ectxs, Nf));
6217f2cacb80SMatthew G. Knepley     if (u) {
6218f60fa741SMatthew G. Knepley       for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolution(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]]));
6219f60fa741SMatthew G. Knepley       if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu));
6220f60fa741SMatthew G. Knepley       else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu));
62217f96f943SMatthew G. Knepley     }
6222f2cacb80SMatthew G. Knepley     if (u_t) {
62239566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(exacts, Nf));
62249566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(ectxs, Nf));
6225f60fa741SMatthew G. Knepley       for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolutionTimeDerivative(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]]));
6226f60fa741SMatthew G. Knepley       if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu_t));
6227f60fa741SMatthew G. Knepley       else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu_t));
6228f2cacb80SMatthew G. Knepley     }
62299566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(fieldIS, &fields));
6230f2cacb80SMatthew G. Knepley   }
6231f2cacb80SMatthew G. Knepley   if (u) {
62329566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution"));
62339566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u, "exact_"));
6234f2cacb80SMatthew G. Knepley   }
6235f2cacb80SMatthew G. Knepley   if (u_t) {
62369566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution Time Derivative"));
62379566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u_t, "exact_t_"));
6238f2cacb80SMatthew G. Knepley   }
62399566063dSJacob Faibussowitsch   PetscCall(PetscFree2(exacts, ectxs));
6240f60fa741SMatthew G. Knepley   if (u) {
6241f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalBegin(dm, locu, INSERT_ALL_VALUES, u));
6242f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalEnd(dm, locu, INSERT_ALL_VALUES, u));
6243f60fa741SMatthew G. Knepley     PetscCall(DMRestoreLocalVector(dm, &locu));
6244f60fa741SMatthew G. Knepley   }
6245f60fa741SMatthew G. Knepley   if (u_t) {
6246f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalBegin(dm, locu_t, INSERT_ALL_VALUES, u_t));
6247f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalEnd(dm, locu_t, INSERT_ALL_VALUES, u_t));
6248f60fa741SMatthew G. Knepley     PetscCall(DMRestoreLocalVector(dm, &locu_t));
6249f60fa741SMatthew G. Knepley   }
62503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
62517f96f943SMatthew G. Knepley }
62527f96f943SMatthew G. Knepley 
625307218a29SMatthew G. Knepley static PetscErrorCode DMTransferDS_Internal(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn)
6254d71ae5a4SJacob Faibussowitsch {
625507218a29SMatthew G. Knepley   PetscDS dsNew, dsInNew = NULL;
625645480ffeSMatthew G. Knepley 
625745480ffeSMatthew G. Knepley   PetscFunctionBegin;
62589566063dSJacob Faibussowitsch   PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)ds), &dsNew));
625907218a29SMatthew G. Knepley   PetscCall(PetscDSCopy(ds, dm, dsNew));
626007218a29SMatthew G. Knepley   if (dsIn) {
626107218a29SMatthew G. Knepley     PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)dsIn), &dsInNew));
626207218a29SMatthew G. Knepley     PetscCall(PetscDSCopy(dsIn, dm, dsInNew));
626345480ffeSMatthew G. Knepley   }
626407218a29SMatthew G. Knepley   PetscCall(DMSetRegionDS(dm, label, fields, dsNew, dsInNew));
62659566063dSJacob Faibussowitsch   PetscCall(PetscDSDestroy(&dsNew));
626607218a29SMatthew G. Knepley   PetscCall(PetscDSDestroy(&dsInNew));
62673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
626845480ffeSMatthew G. Knepley }
626945480ffeSMatthew G. Knepley 
62707f96f943SMatthew G. Knepley /*@
6271bb7acecfSBarry Smith   DMCopyDS - Copy the discrete systems for the `DM` into another `DM`
6272e5e52638SMatthew G. Knepley 
627320f4b53cSBarry Smith   Collective
6274e5e52638SMatthew G. Knepley 
6275e5e52638SMatthew G. Knepley   Input Parameter:
6276bb7acecfSBarry Smith . dm - The `DM`
6277e5e52638SMatthew G. Knepley 
6278e5e52638SMatthew G. Knepley   Output Parameter:
6279bb7acecfSBarry Smith . newdm - The `DM`
6280e5e52638SMatthew G. Knepley 
6281e5e52638SMatthew G. Knepley   Level: advanced
6282e5e52638SMatthew G. Knepley 
62831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`
6284e5e52638SMatthew G. Knepley @*/
6285d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDS(DM dm, DM newdm)
6286d71ae5a4SJacob Faibussowitsch {
6287e5e52638SMatthew G. Knepley   PetscInt Nds, s;
6288e5e52638SMatthew G. Knepley 
6289e5e52638SMatthew G. Knepley   PetscFunctionBegin;
62903ba16761SJacob Faibussowitsch   if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS);
62919566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
62929566063dSJacob Faibussowitsch   PetscCall(DMClearDS(newdm));
6293e5e52638SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
6294e5e52638SMatthew G. Knepley     DMLabel  label;
6295b3cf3223SMatthew G. Knepley     IS       fields;
629607218a29SMatthew G. Knepley     PetscDS  ds, dsIn, newds;
6297783e2ec8SMatthew G. Knepley     PetscInt Nbd, bd;
6298e5e52638SMatthew G. Knepley 
629907218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fields, &ds, &dsIn));
6300b8025e53SMatthew G. Knepley     /* TODO: We need to change all keys from labels in the old DM to labels in the new DM */
630107218a29SMatthew G. Knepley     PetscCall(DMTransferDS_Internal(newdm, label, fields, ds, dsIn));
6302d5b43468SJose E. Roman     /* Complete new labels in the new DS */
630307218a29SMatthew G. Knepley     PetscCall(DMGetRegionDS(newdm, label, NULL, &newds, NULL));
63049566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumBoundary(newds, &Nbd));
6305783e2ec8SMatthew G. Knepley     for (bd = 0; bd < Nbd; ++bd) {
6306b8025e53SMatthew G. Knepley       PetscWeakForm wf;
630745480ffeSMatthew G. Knepley       DMLabel       label;
6308783e2ec8SMatthew G. Knepley       PetscInt      field;
6309783e2ec8SMatthew G. Knepley 
63109566063dSJacob Faibussowitsch       PetscCall(PetscDSGetBoundary(newds, bd, &wf, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL));
63119566063dSJacob Faibussowitsch       PetscCall(PetscWeakFormReplaceLabel(wf, label));
6312783e2ec8SMatthew G. Knepley     }
6313e5e52638SMatthew G. Knepley   }
6314799db056SMatthew G. Knepley   PetscCall(DMCompleteBCLabels_Internal(newdm));
63153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6316e5e52638SMatthew G. Knepley }
6317e5e52638SMatthew G. Knepley 
6318e5e52638SMatthew G. Knepley /*@
6319bb7acecfSBarry Smith   DMCopyDisc - Copy the fields and discrete systems for the `DM` into another `DM`
6320e5e52638SMatthew G. Knepley 
632120f4b53cSBarry Smith   Collective
6322e5e52638SMatthew G. Knepley 
6323e5e52638SMatthew G. Knepley   Input Parameter:
6324bb7acecfSBarry Smith . dm - The `DM`
6325e5e52638SMatthew G. Knepley 
6326e5e52638SMatthew G. Knepley   Output Parameter:
6327bb7acecfSBarry Smith . newdm - The `DM`
6328e5e52638SMatthew G. Knepley 
6329e5e52638SMatthew G. Knepley   Level: advanced
6330e5e52638SMatthew G. Knepley 
633173ff1848SBarry Smith   Developer Note:
6332bb7acecfSBarry Smith   Really ugly name, nothing in PETSc is called a `Disc` plus it is an ugly abbreviation
6333bb7acecfSBarry Smith 
63341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMCopyDS()`
6335e5e52638SMatthew G. Knepley @*/
6336d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDisc(DM dm, DM newdm)
6337d71ae5a4SJacob Faibussowitsch {
6338e5e52638SMatthew G. Knepley   PetscFunctionBegin;
63399566063dSJacob Faibussowitsch   PetscCall(DMCopyFields(dm, newdm));
63409566063dSJacob Faibussowitsch   PetscCall(DMCopyDS(dm, newdm));
63413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6342e5e52638SMatthew G. Knepley }
6343e5e52638SMatthew G. Knepley 
6344c73cfb54SMatthew G. Knepley /*@
6345bb7acecfSBarry Smith   DMGetDimension - Return the topological dimension of the `DM`
6346c73cfb54SMatthew G. Knepley 
634720f4b53cSBarry Smith   Not Collective
6348c73cfb54SMatthew G. Knepley 
6349c73cfb54SMatthew G. Knepley   Input Parameter:
6350bb7acecfSBarry Smith . dm - The `DM`
6351c73cfb54SMatthew G. Knepley 
6352c73cfb54SMatthew G. Knepley   Output Parameter:
6353c73cfb54SMatthew G. Knepley . dim - The topological dimension
6354c73cfb54SMatthew G. Knepley 
6355c73cfb54SMatthew G. Knepley   Level: beginner
6356c73cfb54SMatthew G. Knepley 
63571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDimension()`, `DMCreate()`
6358c73cfb54SMatthew G. Knepley @*/
6359d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimension(DM dm, PetscInt *dim)
6360d71ae5a4SJacob Faibussowitsch {
6361c73cfb54SMatthew G. Knepley   PetscFunctionBegin;
6362c73cfb54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
63634f572ea9SToby Isaac   PetscAssertPointer(dim, 2);
6364c73cfb54SMatthew G. Knepley   *dim = dm->dim;
63653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6366c73cfb54SMatthew G. Knepley }
6367c73cfb54SMatthew G. Knepley 
6368c73cfb54SMatthew G. Knepley /*@
6369bb7acecfSBarry Smith   DMSetDimension - Set the topological dimension of the `DM`
6370c73cfb54SMatthew G. Knepley 
637120f4b53cSBarry Smith   Collective
6372c73cfb54SMatthew G. Knepley 
6373c73cfb54SMatthew G. Knepley   Input Parameters:
6374bb7acecfSBarry Smith + dm  - The `DM`
6375c73cfb54SMatthew G. Knepley - dim - The topological dimension
6376c73cfb54SMatthew G. Knepley 
6377c73cfb54SMatthew G. Knepley   Level: beginner
6378c73cfb54SMatthew G. Knepley 
63791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDimension()`, `DMCreate()`
6380c73cfb54SMatthew G. Knepley @*/
6381d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDimension(DM dm, PetscInt dim)
6382d71ae5a4SJacob Faibussowitsch {
6383e5e52638SMatthew G. Knepley   PetscDS  ds;
638445480ffeSMatthew G. Knepley   PetscInt Nds, n;
6385f17e8794SMatthew G. Knepley 
6386c73cfb54SMatthew G. Knepley   PetscFunctionBegin;
6387c73cfb54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6388c73cfb54SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, dim, 2);
6389c73cfb54SMatthew G. Knepley   dm->dim = dim;
6390d17bd122SMatthew G. Knepley   if (dm->dim >= 0) {
63919566063dSJacob Faibussowitsch     PetscCall(DMGetNumDS(dm, &Nds));
639245480ffeSMatthew G. Knepley     for (n = 0; n < Nds; ++n) {
639307218a29SMatthew G. Knepley       PetscCall(DMGetRegionNumDS(dm, n, NULL, NULL, &ds, NULL));
63949566063dSJacob Faibussowitsch       if (ds->dimEmbed < 0) PetscCall(PetscDSSetCoordinateDimension(ds, dim));
639545480ffeSMatthew G. Knepley     }
6396d17bd122SMatthew G. Knepley   }
63973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6398c73cfb54SMatthew G. Knepley }
6399c73cfb54SMatthew G. Knepley 
6400793f3fe5SMatthew G. Knepley /*@
6401793f3fe5SMatthew G. Knepley   DMGetDimPoints - Get the half-open interval for all points of a given dimension
6402793f3fe5SMatthew G. Knepley 
640320f4b53cSBarry Smith   Collective
6404793f3fe5SMatthew G. Knepley 
6405793f3fe5SMatthew G. Knepley   Input Parameters:
6406bb7acecfSBarry Smith + dm  - the `DM`
6407793f3fe5SMatthew G. Knepley - dim - the dimension
6408793f3fe5SMatthew G. Knepley 
6409793f3fe5SMatthew G. Knepley   Output Parameters:
6410793f3fe5SMatthew G. Knepley + pStart - The first point of the given dimension
6411aa049354SPatrick Sanan - pEnd   - The first point following points of the given dimension
6412793f3fe5SMatthew G. Knepley 
641320f4b53cSBarry Smith   Level: intermediate
641420f4b53cSBarry Smith 
6415793f3fe5SMatthew G. Knepley   Note:
6416793f3fe5SMatthew G. Knepley   The points are vertices in the Hasse diagram encoding the topology. This is explained in
6417a8d69d7bSBarry Smith   https://arxiv.org/abs/0908.4427. If no points exist of this dimension in the storage scheme,
6418793f3fe5SMatthew G. Knepley   then the interval is empty.
6419793f3fe5SMatthew G. Knepley 
64201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPLEX`, `DMPlexGetDepthStratum()`, `DMPlexGetHeightStratum()`
6421793f3fe5SMatthew G. Knepley @*/
6422d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimPoints(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd)
6423d71ae5a4SJacob Faibussowitsch {
6424793f3fe5SMatthew G. Knepley   PetscInt d;
6425793f3fe5SMatthew G. Knepley 
6426793f3fe5SMatthew G. Knepley   PetscFunctionBegin;
6427793f3fe5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
64289566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &d));
64297a8be351SBarry Smith   PetscCheck((dim >= 0) && (dim <= d), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %" PetscInt_FMT, dim);
6430dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, getdimpoints, dim, pStart, pEnd);
64313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6432793f3fe5SMatthew G. Knepley }
6433793f3fe5SMatthew G. Knepley 
64346636e97aSMatthew G Knepley /*@
6435bb7acecfSBarry Smith   DMGetOutputDM - Retrieve the `DM` associated with the layout for output
6436f4d763aaSMatthew G. Knepley 
643720f4b53cSBarry Smith   Collective
64388f700142SStefano Zampini 
6439f4d763aaSMatthew G. Knepley   Input Parameter:
6440bb7acecfSBarry Smith . dm - The original `DM`
6441f4d763aaSMatthew G. Knepley 
6442f4d763aaSMatthew G. Knepley   Output Parameter:
6443bb7acecfSBarry Smith . odm - The `DM` which provides the layout for output
6444f4d763aaSMatthew G. Knepley 
6445f4d763aaSMatthew G. Knepley   Level: intermediate
6446f4d763aaSMatthew G. Knepley 
6447bb7acecfSBarry Smith   Note:
6448bb7acecfSBarry Smith   In some situations the vector obtained with `DMCreateGlobalVector()` excludes points for degrees of freedom that are associated with fixed (Dirichelet) boundary
6449bb7acecfSBarry Smith   conditions since the algebraic solver does not solve for those variables. The output `DM` includes these excluded points and its global vector contains the
6450bb7acecfSBarry Smith   locations for those dof so that they can be output to a file or other viewer along with the unconstrained dof.
6451bb7acecfSBarry Smith 
64521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`, `DMGetGlobalSection()`, `DMCreateGlobalVector()`, `PetscSectionHasConstraints()`, `DMSetGlobalSection()`
6453f4d763aaSMatthew G. Knepley @*/
6454d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputDM(DM dm, DM *odm)
6455d71ae5a4SJacob Faibussowitsch {
6456c26acbdeSMatthew G. Knepley   PetscSection section;
6457eb9d3e4dSMatthew G. Knepley   IS           perm;
6458eb9d3e4dSMatthew G. Knepley   PetscBool    hasConstraints, newDM, gnewDM;
645914f150ffSMatthew G. Knepley 
646014f150ffSMatthew G. Knepley   PetscFunctionBegin;
646114f150ffSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
64624f572ea9SToby Isaac   PetscAssertPointer(odm, 2);
64639566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
64649566063dSJacob Faibussowitsch   PetscCall(PetscSectionHasConstraints(section, &hasConstraints));
6465eb9d3e4dSMatthew G. Knepley   PetscCall(PetscSectionGetPermutation(section, &perm));
6466eb9d3e4dSMatthew G. Knepley   newDM = hasConstraints || perm ? PETSC_TRUE : PETSC_FALSE;
6467eb9d3e4dSMatthew G. Knepley   PetscCall(MPIU_Allreduce(&newDM, &gnewDM, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm)));
6468eb9d3e4dSMatthew G. Knepley   if (!gnewDM) {
6469c26acbdeSMatthew G. Knepley     *odm = dm;
64703ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
6471c26acbdeSMatthew G. Knepley   }
647214f150ffSMatthew G. Knepley   if (!dm->dmBC) {
6473c26acbdeSMatthew G. Knepley     PetscSection newSection, gsection;
647414f150ffSMatthew G. Knepley     PetscSF      sf;
6475eb9d3e4dSMatthew G. Knepley     PetscBool    usePerm = dm->ignorePermOutput ? PETSC_FALSE : PETSC_TRUE;
647614f150ffSMatthew G. Knepley 
64779566063dSJacob Faibussowitsch     PetscCall(DMClone(dm, &dm->dmBC));
64789566063dSJacob Faibussowitsch     PetscCall(DMCopyDisc(dm, dm->dmBC));
64799566063dSJacob Faibussowitsch     PetscCall(PetscSectionClone(section, &newSection));
64809566063dSJacob Faibussowitsch     PetscCall(DMSetLocalSection(dm->dmBC, newSection));
64819566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&newSection));
64829566063dSJacob Faibussowitsch     PetscCall(DMGetPointSF(dm->dmBC, &sf));
6483eb9d3e4dSMatthew G. Knepley     PetscCall(PetscSectionCreateGlobalSection(section, sf, usePerm, PETSC_TRUE, PETSC_FALSE, &gsection));
64849566063dSJacob Faibussowitsch     PetscCall(DMSetGlobalSection(dm->dmBC, gsection));
64859566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&gsection));
648614f150ffSMatthew G. Knepley   }
648714f150ffSMatthew G. Knepley   *odm = dm->dmBC;
64883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
648914f150ffSMatthew G. Knepley }
6490f4d763aaSMatthew G. Knepley 
6491f4d763aaSMatthew G. Knepley /*@
6492cdb7a50dSMatthew G. Knepley   DMGetOutputSequenceNumber - Retrieve the sequence number/value for output
6493f4d763aaSMatthew G. Knepley 
6494f4d763aaSMatthew G. Knepley   Input Parameter:
6495bb7acecfSBarry Smith . dm - The original `DM`
6496f4d763aaSMatthew G. Knepley 
6497cdb7a50dSMatthew G. Knepley   Output Parameters:
6498cdb7a50dSMatthew G. Knepley + num - The output sequence number
6499cdb7a50dSMatthew G. Knepley - val - The output sequence value
6500f4d763aaSMatthew G. Knepley 
6501f4d763aaSMatthew G. Knepley   Level: intermediate
6502f4d763aaSMatthew G. Knepley 
6503bb7acecfSBarry Smith   Note:
6504bb7acecfSBarry Smith   This is intended for output that should appear in sequence, for instance
6505bb7acecfSBarry Smith   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6506bb7acecfSBarry Smith 
650773ff1848SBarry Smith   Developer Note:
6508bb7acecfSBarry Smith   The `DM` serves as a convenient place to store the current iteration value. The iteration is not
6509bb7acecfSBarry Smith   not directly related to the `DM`.
6510f4d763aaSMatthew G. Knepley 
65111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`
6512f4d763aaSMatthew G. Knepley @*/
6513d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputSequenceNumber(DM dm, PetscInt *num, PetscReal *val)
6514d71ae5a4SJacob Faibussowitsch {
6515f4d763aaSMatthew G. Knepley   PetscFunctionBegin;
6516f4d763aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
65179371c9d4SSatish Balay   if (num) {
65184f572ea9SToby Isaac     PetscAssertPointer(num, 2);
65199371c9d4SSatish Balay     *num = dm->outputSequenceNum;
65209371c9d4SSatish Balay   }
65219371c9d4SSatish Balay   if (val) {
65224f572ea9SToby Isaac     PetscAssertPointer(val, 3);
65239371c9d4SSatish Balay     *val = dm->outputSequenceVal;
65249371c9d4SSatish Balay   }
65253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6526f4d763aaSMatthew G. Knepley }
6527f4d763aaSMatthew G. Knepley 
6528f4d763aaSMatthew G. Knepley /*@
6529cdb7a50dSMatthew G. Knepley   DMSetOutputSequenceNumber - Set the sequence number/value for output
6530f4d763aaSMatthew G. Knepley 
6531f4d763aaSMatthew G. Knepley   Input Parameters:
6532bb7acecfSBarry Smith + dm  - The original `DM`
6533cdb7a50dSMatthew G. Knepley . num - The output sequence number
6534cdb7a50dSMatthew G. Knepley - val - The output sequence value
6535f4d763aaSMatthew G. Knepley 
6536f4d763aaSMatthew G. Knepley   Level: intermediate
6537f4d763aaSMatthew G. Knepley 
6538bb7acecfSBarry Smith   Note:
6539bb7acecfSBarry Smith   This is intended for output that should appear in sequence, for instance
6540bb7acecfSBarry Smith   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6541f4d763aaSMatthew G. Knepley 
65421cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`
6543f4d763aaSMatthew G. Knepley @*/
6544d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOutputSequenceNumber(DM dm, PetscInt num, PetscReal val)
6545d71ae5a4SJacob Faibussowitsch {
6546f4d763aaSMatthew G. Knepley   PetscFunctionBegin;
6547f4d763aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6548f4d763aaSMatthew G. Knepley   dm->outputSequenceNum = num;
6549cdb7a50dSMatthew G. Knepley   dm->outputSequenceVal = val;
65503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6551cdb7a50dSMatthew G. Knepley }
6552cdb7a50dSMatthew G. Knepley 
65535d83a8b1SBarry Smith /*@
6554bb7acecfSBarry Smith   DMOutputSequenceLoad - Retrieve the sequence value from a `PetscViewer`
6555cdb7a50dSMatthew G. Knepley 
6556cdb7a50dSMatthew G. Knepley   Input Parameters:
6557bb7acecfSBarry Smith + dm     - The original `DM`
6558b2033f5dSMatthew G. Knepley . viewer - The `PetscViewer` to get it from
6559cdb7a50dSMatthew G. Knepley . name   - The sequence name
6560cdb7a50dSMatthew G. Knepley - num    - The output sequence number
6561cdb7a50dSMatthew G. Knepley 
6562cdb7a50dSMatthew G. Knepley   Output Parameter:
6563cdb7a50dSMatthew G. Knepley . val - The output sequence value
6564cdb7a50dSMatthew G. Knepley 
6565cdb7a50dSMatthew G. Knepley   Level: intermediate
6566cdb7a50dSMatthew G. Knepley 
6567bb7acecfSBarry Smith   Note:
6568bb7acecfSBarry Smith   This is intended for output that should appear in sequence, for instance
6569bb7acecfSBarry Smith   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6570bb7acecfSBarry Smith 
657173ff1848SBarry Smith   Developer Note:
6572bb7acecfSBarry Smith   It is unclear at the user API level why a `DM` is needed as input
6573cdb7a50dSMatthew G. Knepley 
65741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()`
6575cdb7a50dSMatthew G. Knepley @*/
6576b2033f5dSMatthew G. Knepley PetscErrorCode DMOutputSequenceLoad(DM dm, PetscViewer viewer, const char name[], PetscInt num, PetscReal *val)
6577d71ae5a4SJacob Faibussowitsch {
6578cdb7a50dSMatthew G. Knepley   PetscBool ishdf5;
6579cdb7a50dSMatthew G. Knepley 
6580cdb7a50dSMatthew G. Knepley   PetscFunctionBegin;
6581cdb7a50dSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6582cdb7a50dSMatthew G. Knepley   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
6583b2033f5dSMatthew G. Knepley   PetscAssertPointer(name, 3);
65844f572ea9SToby Isaac   PetscAssertPointer(val, 5);
65859566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
6586cdb7a50dSMatthew G. Knepley   if (ishdf5) {
6587cdb7a50dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5)
6588cdb7a50dSMatthew G. Knepley     PetscScalar value;
6589cdb7a50dSMatthew G. Knepley 
65909566063dSJacob Faibussowitsch     PetscCall(DMSequenceLoad_HDF5_Internal(dm, name, num, &value, viewer));
65914aeb217fSMatthew G. Knepley     *val = PetscRealPart(value);
6592cdb7a50dSMatthew G. Knepley #endif
6593cdb7a50dSMatthew G. Knepley   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()");
65943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6595f4d763aaSMatthew G. Knepley }
65968e4ac7eaSMatthew G. Knepley 
65978e4ac7eaSMatthew G. Knepley /*@
6598b2033f5dSMatthew G. Knepley   DMGetOutputSequenceLength - Retrieve the number of sequence values from a `PetscViewer`
6599b2033f5dSMatthew G. Knepley 
6600b2033f5dSMatthew G. Knepley   Input Parameters:
6601b2033f5dSMatthew G. Knepley + dm     - The original `DM`
6602b2033f5dSMatthew G. Knepley . viewer - The `PetscViewer` to get it from
6603b2033f5dSMatthew G. Knepley - name   - The sequence name
6604b2033f5dSMatthew G. Knepley 
6605b2033f5dSMatthew G. Knepley   Output Parameter:
6606b2033f5dSMatthew G. Knepley . len - The length of the output sequence
6607b2033f5dSMatthew G. Knepley 
6608b2033f5dSMatthew G. Knepley   Level: intermediate
6609b2033f5dSMatthew G. Knepley 
6610b2033f5dSMatthew G. Knepley   Note:
6611b2033f5dSMatthew G. Knepley   This is intended for output that should appear in sequence, for instance
6612b2033f5dSMatthew G. Knepley   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6613b2033f5dSMatthew G. Knepley 
6614b2033f5dSMatthew G. Knepley   Developer Note:
6615b2033f5dSMatthew G. Knepley   It is unclear at the user API level why a `DM` is needed as input
6616b2033f5dSMatthew G. Knepley 
6617b2033f5dSMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()`
6618b2033f5dSMatthew G. Knepley @*/
6619b2033f5dSMatthew G. Knepley PetscErrorCode DMGetOutputSequenceLength(DM dm, PetscViewer viewer, const char name[], PetscInt *len)
6620b2033f5dSMatthew G. Knepley {
6621b2033f5dSMatthew G. Knepley   PetscBool ishdf5;
6622b2033f5dSMatthew G. Knepley 
6623b2033f5dSMatthew G. Knepley   PetscFunctionBegin;
6624b2033f5dSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6625b2033f5dSMatthew G. Knepley   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
6626b2033f5dSMatthew G. Knepley   PetscAssertPointer(name, 3);
6627b2033f5dSMatthew G. Knepley   PetscAssertPointer(len, 4);
6628b2033f5dSMatthew G. Knepley   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
6629b2033f5dSMatthew G. Knepley   if (ishdf5) {
6630b2033f5dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5)
6631b2033f5dSMatthew G. Knepley     PetscCall(DMSequenceGetLength_HDF5_Internal(dm, name, len, viewer));
6632b2033f5dSMatthew G. Knepley #endif
6633b2033f5dSMatthew G. Knepley   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()");
6634b2033f5dSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
6635b2033f5dSMatthew G. Knepley }
6636b2033f5dSMatthew G. Knepley 
6637b2033f5dSMatthew G. Knepley /*@
6638bb7acecfSBarry Smith   DMGetUseNatural - Get the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel
66398e4ac7eaSMatthew G. Knepley 
664020f4b53cSBarry Smith   Not Collective
66418e4ac7eaSMatthew G. Knepley 
66428e4ac7eaSMatthew G. Knepley   Input Parameter:
6643bb7acecfSBarry Smith . dm - The `DM`
66448e4ac7eaSMatthew G. Knepley 
66458e4ac7eaSMatthew G. Knepley   Output Parameter:
6646bb7acecfSBarry Smith . useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution
66478e4ac7eaSMatthew G. Knepley 
66488e4ac7eaSMatthew G. Knepley   Level: beginner
66498e4ac7eaSMatthew G. Knepley 
66501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetUseNatural()`, `DMCreate()`
66518e4ac7eaSMatthew G. Knepley @*/
6652d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetUseNatural(DM dm, PetscBool *useNatural)
6653d71ae5a4SJacob Faibussowitsch {
66548e4ac7eaSMatthew G. Knepley   PetscFunctionBegin;
66558e4ac7eaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
66564f572ea9SToby Isaac   PetscAssertPointer(useNatural, 2);
66578e4ac7eaSMatthew G. Knepley   *useNatural = dm->useNatural;
66583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
66598e4ac7eaSMatthew G. Knepley }
66608e4ac7eaSMatthew G. Knepley 
66618e4ac7eaSMatthew G. Knepley /*@
6662bb7acecfSBarry Smith   DMSetUseNatural - Set the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel
66638e4ac7eaSMatthew G. Knepley 
666420f4b53cSBarry Smith   Collective
66658e4ac7eaSMatthew G. Knepley 
66668e4ac7eaSMatthew G. Knepley   Input Parameters:
6667bb7acecfSBarry Smith + dm         - The `DM`
6668bb7acecfSBarry Smith - useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution
66698e4ac7eaSMatthew G. Knepley 
667073ff1848SBarry Smith   Level: beginner
667173ff1848SBarry Smith 
6672bb7acecfSBarry Smith   Note:
6673bb7acecfSBarry Smith   This also causes the map to be build after `DMCreateSubDM()` and `DMCreateSuperDM()`
66745d3b26e6SMatthew G. Knepley 
66751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetUseNatural()`, `DMCreate()`, `DMPlexDistribute()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
66768e4ac7eaSMatthew G. Knepley @*/
6677d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUseNatural(DM dm, PetscBool useNatural)
6678d71ae5a4SJacob Faibussowitsch {
66798e4ac7eaSMatthew G. Knepley   PetscFunctionBegin;
66808e4ac7eaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
66818833efb5SBlaise Bourdin   PetscValidLogicalCollectiveBool(dm, useNatural, 2);
66828e4ac7eaSMatthew G. Knepley   dm->useNatural = useNatural;
66833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
66848e4ac7eaSMatthew G. Knepley }
6685c58f1c22SToby Isaac 
6686cc4c1da9SBarry Smith /*@
6687bb7acecfSBarry Smith   DMCreateLabel - Create a label of the given name if it does not already exist in the `DM`
6688c58f1c22SToby Isaac 
6689c58f1c22SToby Isaac   Not Collective
6690c58f1c22SToby Isaac 
6691c58f1c22SToby Isaac   Input Parameters:
6692bb7acecfSBarry Smith + dm   - The `DM` object
6693c58f1c22SToby Isaac - name - The label name
6694c58f1c22SToby Isaac 
6695c58f1c22SToby Isaac   Level: intermediate
6696c58f1c22SToby Isaac 
66971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6698c58f1c22SToby Isaac @*/
6699d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabel(DM dm, const char name[])
6700d71ae5a4SJacob Faibussowitsch {
67015d80c0bfSVaclav Hapla   PetscBool flg;
67025d80c0bfSVaclav Hapla   DMLabel   label;
6703c58f1c22SToby Isaac 
6704c58f1c22SToby Isaac   PetscFunctionBegin;
6705c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
67064f572ea9SToby Isaac   PetscAssertPointer(name, 2);
67079566063dSJacob Faibussowitsch   PetscCall(DMHasLabel(dm, name, &flg));
6708c58f1c22SToby Isaac   if (!flg) {
67099566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label));
67109566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dm, label));
67119566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&label));
6712c58f1c22SToby Isaac   }
67133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6714c58f1c22SToby Isaac }
6715c58f1c22SToby Isaac 
6716cc4c1da9SBarry Smith /*@
6717bb7acecfSBarry Smith   DMCreateLabelAtIndex - Create a label of the given name at the given index. If it already exists in the `DM`, move it to this index.
67180fdc7489SMatthew Knepley 
67190fdc7489SMatthew Knepley   Not Collective
67200fdc7489SMatthew Knepley 
67210fdc7489SMatthew Knepley   Input Parameters:
6722bb7acecfSBarry Smith + dm   - The `DM` object
67230fdc7489SMatthew Knepley . l    - The index for the label
67240fdc7489SMatthew Knepley - name - The label name
67250fdc7489SMatthew Knepley 
67260fdc7489SMatthew Knepley   Level: intermediate
67270fdc7489SMatthew Knepley 
67281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateLabel()`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
67290fdc7489SMatthew Knepley @*/
6730d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabelAtIndex(DM dm, PetscInt l, const char name[])
6731d71ae5a4SJacob Faibussowitsch {
67320fdc7489SMatthew Knepley   DMLabelLink orig, prev = NULL;
67330fdc7489SMatthew Knepley   DMLabel     label;
67340fdc7489SMatthew Knepley   PetscInt    Nl, m;
67350fdc7489SMatthew Knepley   PetscBool   flg, match;
67360fdc7489SMatthew Knepley   const char *lname;
67370fdc7489SMatthew Knepley 
67380fdc7489SMatthew Knepley   PetscFunctionBegin;
67390fdc7489SMatthew Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
67404f572ea9SToby Isaac   PetscAssertPointer(name, 3);
67419566063dSJacob Faibussowitsch   PetscCall(DMHasLabel(dm, name, &flg));
67420fdc7489SMatthew Knepley   if (!flg) {
67439566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label));
67449566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dm, label));
67459566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&label));
67460fdc7489SMatthew Knepley   }
67479566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(dm, &Nl));
674863a3b9bcSJacob Faibussowitsch   PetscCheck(l < Nl, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label index %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", l, Nl);
67490fdc7489SMatthew Knepley   for (m = 0, orig = dm->labels; m < Nl; ++m, prev = orig, orig = orig->next) {
67509566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)orig->label, &lname));
67519566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &match));
67520fdc7489SMatthew Knepley     if (match) break;
67530fdc7489SMatthew Knepley   }
67543ba16761SJacob Faibussowitsch   if (m == l) PetscFunctionReturn(PETSC_SUCCESS);
67550fdc7489SMatthew Knepley   if (!m) dm->labels = orig->next;
67560fdc7489SMatthew Knepley   else prev->next = orig->next;
67570fdc7489SMatthew Knepley   if (!l) {
67580fdc7489SMatthew Knepley     orig->next = dm->labels;
67590fdc7489SMatthew Knepley     dm->labels = orig;
67600fdc7489SMatthew Knepley   } else {
6761fbccb6d4SPierre Jolivet     for (m = 0, prev = dm->labels; m < l - 1; ++m, prev = prev->next);
67620fdc7489SMatthew Knepley     orig->next = prev->next;
67630fdc7489SMatthew Knepley     prev->next = orig;
67640fdc7489SMatthew Knepley   }
67653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
67660fdc7489SMatthew Knepley }
67670fdc7489SMatthew Knepley 
6768cc4c1da9SBarry Smith /*@
6769bb7acecfSBarry Smith   DMGetLabelValue - Get the value in a `DMLabel` for the given point, with -1 as the default
6770c58f1c22SToby Isaac 
6771c58f1c22SToby Isaac   Not Collective
6772c58f1c22SToby Isaac 
6773c58f1c22SToby Isaac   Input Parameters:
6774bb7acecfSBarry Smith + dm    - The `DM` object
6775c58f1c22SToby Isaac . name  - The label name
6776c58f1c22SToby Isaac - point - The mesh point
6777c58f1c22SToby Isaac 
6778c58f1c22SToby Isaac   Output Parameter:
6779c58f1c22SToby Isaac . value - The label value for this point, or -1 if the point is not in the label
6780c58f1c22SToby Isaac 
6781c58f1c22SToby Isaac   Level: beginner
6782c58f1c22SToby Isaac 
67831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6784c58f1c22SToby Isaac @*/
6785d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelValue(DM dm, const char name[], PetscInt point, PetscInt *value)
6786d71ae5a4SJacob Faibussowitsch {
6787c58f1c22SToby Isaac   DMLabel label;
6788c58f1c22SToby Isaac 
6789c58f1c22SToby Isaac   PetscFunctionBegin;
6790c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
67914f572ea9SToby Isaac   PetscAssertPointer(name, 2);
67929566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
67937a8be351SBarry Smith   PetscCheck(label, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No label named %s was found", name);
67949566063dSJacob Faibussowitsch   PetscCall(DMLabelGetValue(label, point, value));
67953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6796c58f1c22SToby Isaac }
6797c58f1c22SToby Isaac 
6798cc4c1da9SBarry Smith /*@
6799bb7acecfSBarry Smith   DMSetLabelValue - Add a point to a `DMLabel` with given value
6800c58f1c22SToby Isaac 
6801c58f1c22SToby Isaac   Not Collective
6802c58f1c22SToby Isaac 
6803c58f1c22SToby Isaac   Input Parameters:
6804bb7acecfSBarry Smith + dm    - The `DM` object
6805c58f1c22SToby Isaac . name  - The label name
6806c58f1c22SToby Isaac . point - The mesh point
6807c58f1c22SToby Isaac - value - The label value for this point
6808c58f1c22SToby Isaac 
6809c58f1c22SToby Isaac   Output Parameter:
6810c58f1c22SToby Isaac 
6811c58f1c22SToby Isaac   Level: beginner
6812c58f1c22SToby Isaac 
68131cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelSetValue()`, `DMGetStratumIS()`, `DMClearLabelValue()`
6814c58f1c22SToby Isaac @*/
6815d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue(DM dm, const char name[], PetscInt point, PetscInt value)
6816d71ae5a4SJacob Faibussowitsch {
6817c58f1c22SToby Isaac   DMLabel label;
6818c58f1c22SToby Isaac 
6819c58f1c22SToby Isaac   PetscFunctionBegin;
6820c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
68214f572ea9SToby Isaac   PetscAssertPointer(name, 2);
68229566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6823c58f1c22SToby Isaac   if (!label) {
68249566063dSJacob Faibussowitsch     PetscCall(DMCreateLabel(dm, name));
68259566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, name, &label));
6826c58f1c22SToby Isaac   }
68279566063dSJacob Faibussowitsch   PetscCall(DMLabelSetValue(label, point, value));
68283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6829c58f1c22SToby Isaac }
6830c58f1c22SToby Isaac 
6831cc4c1da9SBarry Smith /*@
6832bb7acecfSBarry Smith   DMClearLabelValue - Remove a point from a `DMLabel` with given value
6833c58f1c22SToby Isaac 
6834c58f1c22SToby Isaac   Not Collective
6835c58f1c22SToby Isaac 
6836c58f1c22SToby Isaac   Input Parameters:
6837bb7acecfSBarry Smith + dm    - The `DM` object
6838c58f1c22SToby Isaac . name  - The label name
6839c58f1c22SToby Isaac . point - The mesh point
6840c58f1c22SToby Isaac - value - The label value for this point
6841c58f1c22SToby Isaac 
6842c58f1c22SToby Isaac   Level: beginner
6843c58f1c22SToby Isaac 
68441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelClearValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6845c58f1c22SToby Isaac @*/
6846d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelValue(DM dm, const char name[], PetscInt point, PetscInt value)
6847d71ae5a4SJacob Faibussowitsch {
6848c58f1c22SToby Isaac   DMLabel label;
6849c58f1c22SToby Isaac 
6850c58f1c22SToby Isaac   PetscFunctionBegin;
6851c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
68524f572ea9SToby Isaac   PetscAssertPointer(name, 2);
68539566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
68543ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
68559566063dSJacob Faibussowitsch   PetscCall(DMLabelClearValue(label, point, value));
68563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6857c58f1c22SToby Isaac }
6858c58f1c22SToby Isaac 
6859cc4c1da9SBarry Smith /*@
6860bb7acecfSBarry Smith   DMGetLabelSize - Get the value of `DMLabelGetNumValues()` of a `DMLabel` in the `DM`
6861c58f1c22SToby Isaac 
6862c58f1c22SToby Isaac   Not Collective
6863c58f1c22SToby Isaac 
6864c58f1c22SToby Isaac   Input Parameters:
6865bb7acecfSBarry Smith + dm   - The `DM` object
6866c58f1c22SToby Isaac - name - The label name
6867c58f1c22SToby Isaac 
6868c58f1c22SToby Isaac   Output Parameter:
6869c58f1c22SToby Isaac . size - The number of different integer ids, or 0 if the label does not exist
6870c58f1c22SToby Isaac 
6871c58f1c22SToby Isaac   Level: beginner
6872c58f1c22SToby Isaac 
687373ff1848SBarry Smith   Developer Note:
6874bb7acecfSBarry Smith   This should be renamed to something like `DMGetLabelNumValues()` or removed.
6875bb7acecfSBarry Smith 
68761cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetNumValues()`, `DMSetLabelValue()`, `DMGetLabel()`
6877c58f1c22SToby Isaac @*/
6878d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelSize(DM dm, const char name[], PetscInt *size)
6879d71ae5a4SJacob Faibussowitsch {
6880c58f1c22SToby Isaac   DMLabel label;
6881c58f1c22SToby Isaac 
6882c58f1c22SToby Isaac   PetscFunctionBegin;
6883c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
68844f572ea9SToby Isaac   PetscAssertPointer(name, 2);
68854f572ea9SToby Isaac   PetscAssertPointer(size, 3);
68869566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6887c58f1c22SToby Isaac   *size = 0;
68883ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
68899566063dSJacob Faibussowitsch   PetscCall(DMLabelGetNumValues(label, size));
68903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6891c58f1c22SToby Isaac }
6892c58f1c22SToby Isaac 
6893cc4c1da9SBarry Smith /*@
6894bb7acecfSBarry Smith   DMGetLabelIdIS - Get the `DMLabelGetValueIS()` from a `DMLabel` in the `DM`
6895c58f1c22SToby Isaac 
6896c58f1c22SToby Isaac   Not Collective
6897c58f1c22SToby Isaac 
6898c58f1c22SToby Isaac   Input Parameters:
689960225df5SJacob Faibussowitsch + dm   - The `DM` object
6900c58f1c22SToby Isaac - name - The label name
6901c58f1c22SToby Isaac 
6902c58f1c22SToby Isaac   Output Parameter:
690320f4b53cSBarry Smith . ids - The integer ids, or `NULL` if the label does not exist
6904c58f1c22SToby Isaac 
6905c58f1c22SToby Isaac   Level: beginner
6906c58f1c22SToby Isaac 
69071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValueIS()`, `DMGetLabelSize()`
6908c58f1c22SToby Isaac @*/
6909d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelIdIS(DM dm, const char name[], IS *ids)
6910d71ae5a4SJacob Faibussowitsch {
6911c58f1c22SToby Isaac   DMLabel label;
6912c58f1c22SToby Isaac 
6913c58f1c22SToby Isaac   PetscFunctionBegin;
6914c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
69154f572ea9SToby Isaac   PetscAssertPointer(name, 2);
69164f572ea9SToby Isaac   PetscAssertPointer(ids, 3);
69179566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6918c58f1c22SToby Isaac   *ids = NULL;
6919dab2e251SBlaise Bourdin   if (label) {
69209566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValueIS(label, ids));
6921dab2e251SBlaise Bourdin   } else {
6922dab2e251SBlaise Bourdin     /* returning an empty IS */
69239566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_USE_POINTER, ids));
6924dab2e251SBlaise Bourdin   }
69253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6926c58f1c22SToby Isaac }
6927c58f1c22SToby Isaac 
6928cc4c1da9SBarry Smith /*@
6929c58f1c22SToby Isaac   DMGetStratumSize - Get the number of points in a label stratum
6930c58f1c22SToby Isaac 
6931c58f1c22SToby Isaac   Not Collective
6932c58f1c22SToby Isaac 
6933c58f1c22SToby Isaac   Input Parameters:
6934bb7acecfSBarry Smith + dm    - The `DM` object
6935b6971eaeSBarry Smith . name  - The label name of the stratum
6936c58f1c22SToby Isaac - value - The stratum value
6937c58f1c22SToby Isaac 
6938c58f1c22SToby Isaac   Output Parameter:
6939bb7acecfSBarry Smith . size - The number of points, also called the stratum size
6940c58f1c22SToby Isaac 
6941c58f1c22SToby Isaac   Level: beginner
6942c58f1c22SToby Isaac 
69431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumSize()`, `DMGetLabelSize()`, `DMGetLabelIds()`
6944c58f1c22SToby Isaac @*/
6945d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumSize(DM dm, const char name[], PetscInt value, PetscInt *size)
6946d71ae5a4SJacob Faibussowitsch {
6947c58f1c22SToby Isaac   DMLabel label;
6948c58f1c22SToby Isaac 
6949c58f1c22SToby Isaac   PetscFunctionBegin;
6950c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
69514f572ea9SToby Isaac   PetscAssertPointer(name, 2);
69524f572ea9SToby Isaac   PetscAssertPointer(size, 4);
69539566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6954c58f1c22SToby Isaac   *size = 0;
69553ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
69569566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumSize(label, value, size));
69573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6958c58f1c22SToby Isaac }
6959c58f1c22SToby Isaac 
6960cc4c1da9SBarry Smith /*@
6961c58f1c22SToby Isaac   DMGetStratumIS - Get the points in a label stratum
6962c58f1c22SToby Isaac 
6963c58f1c22SToby Isaac   Not Collective
6964c58f1c22SToby Isaac 
6965c58f1c22SToby Isaac   Input Parameters:
6966bb7acecfSBarry Smith + dm    - The `DM` object
6967c58f1c22SToby Isaac . name  - The label name
6968c58f1c22SToby Isaac - value - The stratum value
6969c58f1c22SToby Isaac 
6970c58f1c22SToby Isaac   Output Parameter:
697120f4b53cSBarry Smith . points - The stratum points, or `NULL` if the label does not exist or does not have that value
6972c58f1c22SToby Isaac 
6973c58f1c22SToby Isaac   Level: beginner
6974c58f1c22SToby Isaac 
69751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumIS()`, `DMGetStratumSize()`
6976c58f1c22SToby Isaac @*/
6977d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumIS(DM dm, const char name[], PetscInt value, IS *points)
6978d71ae5a4SJacob Faibussowitsch {
6979c58f1c22SToby Isaac   DMLabel label;
6980c58f1c22SToby Isaac 
6981c58f1c22SToby Isaac   PetscFunctionBegin;
6982c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
69834f572ea9SToby Isaac   PetscAssertPointer(name, 2);
69844f572ea9SToby Isaac   PetscAssertPointer(points, 4);
69859566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6986c58f1c22SToby Isaac   *points = NULL;
69873ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
69889566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(label, value, points));
69893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6990c58f1c22SToby Isaac }
6991c58f1c22SToby Isaac 
6992cc4c1da9SBarry Smith /*@
69939044fa66SMatthew G. Knepley   DMSetStratumIS - Set the points in a label stratum
69944de306b1SToby Isaac 
69954de306b1SToby Isaac   Not Collective
69964de306b1SToby Isaac 
69974de306b1SToby Isaac   Input Parameters:
6998bb7acecfSBarry Smith + dm     - The `DM` object
69994de306b1SToby Isaac . name   - The label name
70004de306b1SToby Isaac . value  - The stratum value
70014de306b1SToby Isaac - points - The stratum points
70024de306b1SToby Isaac 
70034de306b1SToby Isaac   Level: beginner
70044de306b1SToby Isaac 
70051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMClearLabelStratum()`, `DMLabelClearStratum()`, `DMLabelSetStratumIS()`, `DMGetStratumSize()`
70064de306b1SToby Isaac @*/
7007d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetStratumIS(DM dm, const char name[], PetscInt value, IS points)
7008d71ae5a4SJacob Faibussowitsch {
70094de306b1SToby Isaac   DMLabel label;
70104de306b1SToby Isaac 
70114de306b1SToby Isaac   PetscFunctionBegin;
70124de306b1SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
70134f572ea9SToby Isaac   PetscAssertPointer(name, 2);
7014292bffcbSToby Isaac   PetscValidHeaderSpecific(points, IS_CLASSID, 4);
70159566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
70163ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
70179566063dSJacob Faibussowitsch   PetscCall(DMLabelSetStratumIS(label, value, points));
70183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70194de306b1SToby Isaac }
70204de306b1SToby Isaac 
7021cc4c1da9SBarry Smith /*@
7022bb7acecfSBarry Smith   DMClearLabelStratum - Remove all points from a stratum from a `DMLabel`
7023c58f1c22SToby Isaac 
7024c58f1c22SToby Isaac   Not Collective
7025c58f1c22SToby Isaac 
7026c58f1c22SToby Isaac   Input Parameters:
7027bb7acecfSBarry Smith + dm    - The `DM` object
7028c58f1c22SToby Isaac . name  - The label name
7029c58f1c22SToby Isaac - value - The label value for this point
7030c58f1c22SToby Isaac 
7031c58f1c22SToby Isaac   Output Parameter:
7032c58f1c22SToby Isaac 
7033c58f1c22SToby Isaac   Level: beginner
7034c58f1c22SToby Isaac 
70351cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMLabelClearStratum()`, `DMSetLabelValue()`, `DMGetStratumIS()`, `DMClearLabelValue()`
7036c58f1c22SToby Isaac @*/
7037d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelStratum(DM dm, const char name[], PetscInt value)
7038d71ae5a4SJacob Faibussowitsch {
7039c58f1c22SToby Isaac   DMLabel label;
7040c58f1c22SToby Isaac 
7041c58f1c22SToby Isaac   PetscFunctionBegin;
7042c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
70434f572ea9SToby Isaac   PetscAssertPointer(name, 2);
70449566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
70453ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
70469566063dSJacob Faibussowitsch   PetscCall(DMLabelClearStratum(label, value));
70473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7048c58f1c22SToby Isaac }
7049c58f1c22SToby Isaac 
7050c58f1c22SToby Isaac /*@
7051bb7acecfSBarry Smith   DMGetNumLabels - Return the number of labels defined by on the `DM`
7052c58f1c22SToby Isaac 
7053c58f1c22SToby Isaac   Not Collective
7054c58f1c22SToby Isaac 
7055c58f1c22SToby Isaac   Input Parameter:
7056bb7acecfSBarry Smith . dm - The `DM` object
7057c58f1c22SToby Isaac 
7058c58f1c22SToby Isaac   Output Parameter:
7059c58f1c22SToby Isaac . numLabels - the number of Labels
7060c58f1c22SToby Isaac 
7061c58f1c22SToby Isaac   Level: intermediate
7062c58f1c22SToby Isaac 
70631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabelName()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7064c58f1c22SToby Isaac @*/
7065d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumLabels(DM dm, PetscInt *numLabels)
7066d71ae5a4SJacob Faibussowitsch {
70675d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7068c58f1c22SToby Isaac   PetscInt    n    = 0;
7069c58f1c22SToby Isaac 
7070c58f1c22SToby Isaac   PetscFunctionBegin;
7071c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
70724f572ea9SToby Isaac   PetscAssertPointer(numLabels, 2);
70739371c9d4SSatish Balay   while (next) {
70749371c9d4SSatish Balay     ++n;
70759371c9d4SSatish Balay     next = next->next;
70769371c9d4SSatish Balay   }
7077c58f1c22SToby Isaac   *numLabels = n;
70783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7079c58f1c22SToby Isaac }
7080c58f1c22SToby Isaac 
7081cc4c1da9SBarry Smith /*@
7082c58f1c22SToby Isaac   DMGetLabelName - Return the name of nth label
7083c58f1c22SToby Isaac 
7084c58f1c22SToby Isaac   Not Collective
7085c58f1c22SToby Isaac 
7086c58f1c22SToby Isaac   Input Parameters:
7087bb7acecfSBarry Smith + dm - The `DM` object
7088c58f1c22SToby Isaac - n  - the label number
7089c58f1c22SToby Isaac 
7090c58f1c22SToby Isaac   Output Parameter:
7091c58f1c22SToby Isaac . name - the label name
7092c58f1c22SToby Isaac 
7093c58f1c22SToby Isaac   Level: intermediate
7094c58f1c22SToby Isaac 
709573ff1848SBarry Smith   Developer Note:
7096bb7acecfSBarry Smith   Some of the functions that appropriate on labels using their number have the suffix ByNum, others do not.
7097bb7acecfSBarry Smith 
70981cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7099c58f1c22SToby Isaac @*/
7100cc4c1da9SBarry Smith PetscErrorCode DMGetLabelName(DM dm, PetscInt n, const char *name[])
7101d71ae5a4SJacob Faibussowitsch {
71025d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7103c58f1c22SToby Isaac   PetscInt    l    = 0;
7104c58f1c22SToby Isaac 
7105c58f1c22SToby Isaac   PetscFunctionBegin;
7106c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
71074f572ea9SToby Isaac   PetscAssertPointer(name, 3);
7108c58f1c22SToby Isaac   while (next) {
7109c58f1c22SToby Isaac     if (l == n) {
71109566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetName((PetscObject)next->label, name));
71113ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
7112c58f1c22SToby Isaac     }
7113c58f1c22SToby Isaac     ++l;
7114c58f1c22SToby Isaac     next = next->next;
7115c58f1c22SToby Isaac   }
711663a3b9bcSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n);
7117c58f1c22SToby Isaac }
7118c58f1c22SToby Isaac 
7119cc4c1da9SBarry Smith /*@
7120bb7acecfSBarry Smith   DMHasLabel - Determine whether the `DM` has a label of a given name
7121c58f1c22SToby Isaac 
7122c58f1c22SToby Isaac   Not Collective
7123c58f1c22SToby Isaac 
7124c58f1c22SToby Isaac   Input Parameters:
7125bb7acecfSBarry Smith + dm   - The `DM` object
7126c58f1c22SToby Isaac - name - The label name
7127c58f1c22SToby Isaac 
7128c58f1c22SToby Isaac   Output Parameter:
7129bb7acecfSBarry Smith . hasLabel - `PETSC_TRUE` if the label is present
7130c58f1c22SToby Isaac 
7131c58f1c22SToby Isaac   Level: intermediate
7132c58f1c22SToby Isaac 
71331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabel()`, `DMGetLabelByNum()`, `DMCreateLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7134c58f1c22SToby Isaac @*/
7135d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasLabel(DM dm, const char name[], PetscBool *hasLabel)
7136d71ae5a4SJacob Faibussowitsch {
71375d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7138d67d17b1SMatthew G. Knepley   const char *lname;
7139c58f1c22SToby Isaac 
7140c58f1c22SToby Isaac   PetscFunctionBegin;
7141c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
71424f572ea9SToby Isaac   PetscAssertPointer(name, 2);
71434f572ea9SToby Isaac   PetscAssertPointer(hasLabel, 3);
7144c58f1c22SToby Isaac   *hasLabel = PETSC_FALSE;
7145c58f1c22SToby Isaac   while (next) {
71469566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
71479566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, hasLabel));
7148c58f1c22SToby Isaac     if (*hasLabel) break;
7149c58f1c22SToby Isaac     next = next->next;
7150c58f1c22SToby Isaac   }
71513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7152c58f1c22SToby Isaac }
7153c58f1c22SToby Isaac 
7154a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown
7155cc4c1da9SBarry Smith /*@
715620f4b53cSBarry Smith   DMGetLabel - Return the label of a given name, or `NULL`, from a `DM`
7157c58f1c22SToby Isaac 
7158c58f1c22SToby Isaac   Not Collective
7159c58f1c22SToby Isaac 
7160c58f1c22SToby Isaac   Input Parameters:
7161bb7acecfSBarry Smith + dm   - The `DM` object
7162c58f1c22SToby Isaac - name - The label name
7163c58f1c22SToby Isaac 
7164c58f1c22SToby Isaac   Output Parameter:
716520f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent
7166c58f1c22SToby Isaac 
7167bb7acecfSBarry Smith   Default labels in a `DMPLEX`:
7168bb7acecfSBarry Smith + "depth"       - Holds the depth (co-dimension) of each mesh point
7169bb7acecfSBarry Smith . "celltype"    - Holds the topological type of each cell
7170bb7acecfSBarry Smith . "ghost"       - If the DM is distributed with overlap, this marks the cells and faces in the overlap
7171bb7acecfSBarry Smith . "Cell Sets"   - Mirrors the cell sets defined by GMsh and ExodusII
7172bb7acecfSBarry Smith . "Face Sets"   - Mirrors the face sets defined by GMsh and ExodusII
7173bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh
71746d7c9049SMatthew G. Knepley 
7175c58f1c22SToby Isaac   Level: intermediate
7176c58f1c22SToby Isaac 
717760225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMHasLabel()`, `DMGetLabelByNum()`, `DMAddLabel()`, `DMCreateLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()`
7178c58f1c22SToby Isaac @*/
7179d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabel(DM dm, const char name[], DMLabel *label)
7180d71ae5a4SJacob Faibussowitsch {
71815d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7182c58f1c22SToby Isaac   PetscBool   hasLabel;
7183d67d17b1SMatthew G. Knepley   const char *lname;
7184c58f1c22SToby Isaac 
7185c58f1c22SToby Isaac   PetscFunctionBegin;
7186c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
71874f572ea9SToby Isaac   PetscAssertPointer(name, 2);
71884f572ea9SToby Isaac   PetscAssertPointer(label, 3);
7189c58f1c22SToby Isaac   *label = NULL;
7190c58f1c22SToby Isaac   while (next) {
71919566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
71929566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &hasLabel));
7193c58f1c22SToby Isaac     if (hasLabel) {
7194c58f1c22SToby Isaac       *label = next->label;
7195c58f1c22SToby Isaac       break;
7196c58f1c22SToby Isaac     }
7197c58f1c22SToby Isaac     next = next->next;
7198c58f1c22SToby Isaac   }
71993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7200c58f1c22SToby Isaac }
7201c58f1c22SToby Isaac 
7202cc4c1da9SBarry Smith /*@
7203bb7acecfSBarry Smith   DMGetLabelByNum - Return the nth label on a `DM`
7204c58f1c22SToby Isaac 
7205c58f1c22SToby Isaac   Not Collective
7206c58f1c22SToby Isaac 
7207c58f1c22SToby Isaac   Input Parameters:
7208bb7acecfSBarry Smith + dm - The `DM` object
7209c58f1c22SToby Isaac - n  - the label number
7210c58f1c22SToby Isaac 
7211c58f1c22SToby Isaac   Output Parameter:
7212c58f1c22SToby Isaac . label - the label
7213c58f1c22SToby Isaac 
7214c58f1c22SToby Isaac   Level: intermediate
7215c58f1c22SToby Isaac 
72161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7217c58f1c22SToby Isaac @*/
7218d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelByNum(DM dm, PetscInt n, DMLabel *label)
7219d71ae5a4SJacob Faibussowitsch {
72205d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7221c58f1c22SToby Isaac   PetscInt    l    = 0;
7222c58f1c22SToby Isaac 
7223c58f1c22SToby Isaac   PetscFunctionBegin;
7224c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
72254f572ea9SToby Isaac   PetscAssertPointer(label, 3);
7226c58f1c22SToby Isaac   while (next) {
7227c58f1c22SToby Isaac     if (l == n) {
7228c58f1c22SToby Isaac       *label = next->label;
72293ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
7230c58f1c22SToby Isaac     }
7231c58f1c22SToby Isaac     ++l;
7232c58f1c22SToby Isaac     next = next->next;
7233c58f1c22SToby Isaac   }
723463a3b9bcSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n);
7235c58f1c22SToby Isaac }
7236c58f1c22SToby Isaac 
7237cc4c1da9SBarry Smith /*@
7238bb7acecfSBarry Smith   DMAddLabel - Add the label to this `DM`
7239c58f1c22SToby Isaac 
7240c58f1c22SToby Isaac   Not Collective
7241c58f1c22SToby Isaac 
7242c58f1c22SToby Isaac   Input Parameters:
7243bb7acecfSBarry Smith + dm    - The `DM` object
7244bb7acecfSBarry Smith - label - The `DMLabel`
7245c58f1c22SToby Isaac 
7246c58f1c22SToby Isaac   Level: developer
7247c58f1c22SToby Isaac 
724860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7249c58f1c22SToby Isaac @*/
7250d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddLabel(DM dm, DMLabel label)
7251d71ae5a4SJacob Faibussowitsch {
72525d80c0bfSVaclav Hapla   DMLabelLink l, *p, tmpLabel;
7253c58f1c22SToby Isaac   PetscBool   hasLabel;
7254d67d17b1SMatthew G. Knepley   const char *lname;
72555d80c0bfSVaclav Hapla   PetscBool   flg;
7256c58f1c22SToby Isaac 
7257c58f1c22SToby Isaac   PetscFunctionBegin;
7258c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
72599566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetName((PetscObject)label, &lname));
72609566063dSJacob Faibussowitsch   PetscCall(DMHasLabel(dm, lname, &hasLabel));
72617a8be351SBarry Smith   PetscCheck(!hasLabel, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in this DM", lname);
72629566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(1, &tmpLabel));
7263c58f1c22SToby Isaac   tmpLabel->label  = label;
7264c58f1c22SToby Isaac   tmpLabel->output = PETSC_TRUE;
72655d80c0bfSVaclav Hapla   for (p = &dm->labels; (l = *p); p = &l->next) { }
72665d80c0bfSVaclav Hapla   *p = tmpLabel;
72679566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
72689566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(lname, "depth", &flg));
72695d80c0bfSVaclav Hapla   if (flg) dm->depthLabel = label;
72709566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(lname, "celltype", &flg));
7271ba2698f1SMatthew G. Knepley   if (flg) dm->celltypeLabel = label;
72723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7273c58f1c22SToby Isaac }
7274c58f1c22SToby Isaac 
7275a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown
7276cc4c1da9SBarry Smith /*@
72774a7ee7d0SMatthew G. Knepley   DMSetLabel - Replaces the label of a given name, or ignores it if the name is not present
72784a7ee7d0SMatthew G. Knepley 
72794a7ee7d0SMatthew G. Knepley   Not Collective
72804a7ee7d0SMatthew G. Knepley 
72814a7ee7d0SMatthew G. Knepley   Input Parameters:
7282bb7acecfSBarry Smith + dm    - The `DM` object
7283bb7acecfSBarry Smith - label - The `DMLabel`, having the same name, to substitute
72844a7ee7d0SMatthew G. Knepley 
7285bb7acecfSBarry Smith   Default labels in a `DMPLEX`:
7286bb7acecfSBarry Smith + "depth"       - Holds the depth (co-dimension) of each mesh point
7287bb7acecfSBarry Smith . "celltype"    - Holds the topological type of each cell
7288bb7acecfSBarry Smith . "ghost"       - If the DM is distributed with overlap, this marks the cells and faces in the overlap
7289bb7acecfSBarry Smith . "Cell Sets"   - Mirrors the cell sets defined by GMsh and ExodusII
7290bb7acecfSBarry Smith . "Face Sets"   - Mirrors the face sets defined by GMsh and ExodusII
7291bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh
72924a7ee7d0SMatthew G. Knepley 
72934a7ee7d0SMatthew G. Knepley   Level: intermediate
72944a7ee7d0SMatthew G. Knepley 
72951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()`
72964a7ee7d0SMatthew G. Knepley @*/
7297d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabel(DM dm, DMLabel label)
7298d71ae5a4SJacob Faibussowitsch {
72994a7ee7d0SMatthew G. Knepley   DMLabelLink next = dm->labels;
73004a7ee7d0SMatthew G. Knepley   PetscBool   hasLabel, flg;
73014a7ee7d0SMatthew G. Knepley   const char *name, *lname;
73024a7ee7d0SMatthew G. Knepley 
73034a7ee7d0SMatthew G. Knepley   PetscFunctionBegin;
73044a7ee7d0SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
73054a7ee7d0SMatthew G. Knepley   PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
73069566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetName((PetscObject)label, &name));
73074a7ee7d0SMatthew G. Knepley   while (next) {
73089566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
73099566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &hasLabel));
73104a7ee7d0SMatthew G. Knepley     if (hasLabel) {
73119566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)label));
73129566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(lname, "depth", &flg));
73134a7ee7d0SMatthew G. Knepley       if (flg) dm->depthLabel = label;
73149566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(lname, "celltype", &flg));
73154a7ee7d0SMatthew G. Knepley       if (flg) dm->celltypeLabel = label;
73169566063dSJacob Faibussowitsch       PetscCall(DMLabelDestroy(&next->label));
73174a7ee7d0SMatthew G. Knepley       next->label = label;
73184a7ee7d0SMatthew G. Knepley       break;
73194a7ee7d0SMatthew G. Knepley     }
73204a7ee7d0SMatthew G. Knepley     next = next->next;
73214a7ee7d0SMatthew G. Knepley   }
73223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
73234a7ee7d0SMatthew G. Knepley }
73244a7ee7d0SMatthew G. Knepley 
7325cc4c1da9SBarry Smith /*@
7326bb7acecfSBarry Smith   DMRemoveLabel - Remove the label given by name from this `DM`
7327c58f1c22SToby Isaac 
7328c58f1c22SToby Isaac   Not Collective
7329c58f1c22SToby Isaac 
7330c58f1c22SToby Isaac   Input Parameters:
7331bb7acecfSBarry Smith + dm   - The `DM` object
7332c58f1c22SToby Isaac - name - The label name
7333c58f1c22SToby Isaac 
7334c58f1c22SToby Isaac   Output Parameter:
733520f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent. Pass in `NULL` to call `DMLabelDestroy()` on the label, otherwise the
7336bb7acecfSBarry Smith           caller is responsible for calling `DMLabelDestroy()`.
7337c58f1c22SToby Isaac 
7338c58f1c22SToby Isaac   Level: developer
7339c58f1c22SToby Isaac 
73401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabelBySelf()`
7341c58f1c22SToby Isaac @*/
7342d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabel(DM dm, const char name[], DMLabel *label)
7343d71ae5a4SJacob Faibussowitsch {
734495d578d6SVaclav Hapla   DMLabelLink link, *pnext;
7345c58f1c22SToby Isaac   PetscBool   hasLabel;
7346d67d17b1SMatthew G. Knepley   const char *lname;
7347c58f1c22SToby Isaac 
7348c58f1c22SToby Isaac   PetscFunctionBegin;
7349c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
73504f572ea9SToby Isaac   PetscAssertPointer(name, 2);
7351e5472504SVaclav Hapla   if (label) {
73524f572ea9SToby Isaac     PetscAssertPointer(label, 3);
7353c58f1c22SToby Isaac     *label = NULL;
7354e5472504SVaclav Hapla   }
73555d80c0bfSVaclav Hapla   for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) {
73569566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)link->label, &lname));
73579566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &hasLabel));
7358c58f1c22SToby Isaac     if (hasLabel) {
735995d578d6SVaclav Hapla       *pnext = link->next; /* Remove from list */
73609566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "depth", &hasLabel));
736195d578d6SVaclav Hapla       if (hasLabel) dm->depthLabel = NULL;
73629566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "celltype", &hasLabel));
7363ba2698f1SMatthew G. Knepley       if (hasLabel) dm->celltypeLabel = NULL;
736495d578d6SVaclav Hapla       if (label) *label = link->label;
73659566063dSJacob Faibussowitsch       else PetscCall(DMLabelDestroy(&link->label));
73669566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
7367c58f1c22SToby Isaac       break;
7368c58f1c22SToby Isaac     }
7369c58f1c22SToby Isaac   }
73703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7371c58f1c22SToby Isaac }
7372c58f1c22SToby Isaac 
7373306894acSVaclav Hapla /*@
7374bb7acecfSBarry Smith   DMRemoveLabelBySelf - Remove the label from this `DM`
7375306894acSVaclav Hapla 
7376306894acSVaclav Hapla   Not Collective
7377306894acSVaclav Hapla 
7378306894acSVaclav Hapla   Input Parameters:
7379bb7acecfSBarry Smith + dm           - The `DM` object
7380bb7acecfSBarry Smith . label        - The `DMLabel` to be removed from the `DM`
738120f4b53cSBarry Smith - failNotFound - Should it fail if the label is not found in the `DM`?
7382306894acSVaclav Hapla 
7383306894acSVaclav Hapla   Level: developer
7384306894acSVaclav Hapla 
7385bb7acecfSBarry Smith   Note:
7386306894acSVaclav Hapla   Only exactly the same instance is removed if found, name match is ignored.
7387bb7acecfSBarry Smith   If the `DM` has an exclusive reference to the label, the label gets destroyed and
7388306894acSVaclav Hapla   *label nullified.
7389306894acSVaclav Hapla 
73901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()` `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabel()`
7391306894acSVaclav Hapla @*/
7392d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabelBySelf(DM dm, DMLabel *label, PetscBool failNotFound)
7393d71ae5a4SJacob Faibussowitsch {
739443e45a93SVaclav Hapla   DMLabelLink link, *pnext;
7395306894acSVaclav Hapla   PetscBool   hasLabel = PETSC_FALSE;
7396306894acSVaclav Hapla 
7397306894acSVaclav Hapla   PetscFunctionBegin;
7398306894acSVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
73994f572ea9SToby Isaac   PetscAssertPointer(label, 2);
74003ba16761SJacob Faibussowitsch   if (!*label && !failNotFound) PetscFunctionReturn(PETSC_SUCCESS);
7401306894acSVaclav Hapla   PetscValidHeaderSpecific(*label, DMLABEL_CLASSID, 2);
7402306894acSVaclav Hapla   PetscValidLogicalCollectiveBool(dm, failNotFound, 3);
74035d80c0bfSVaclav Hapla   for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) {
740443e45a93SVaclav Hapla     if (*label == link->label) {
7405306894acSVaclav Hapla       hasLabel = PETSC_TRUE;
740643e45a93SVaclav Hapla       *pnext   = link->next; /* Remove from list */
7407306894acSVaclav Hapla       if (*label == dm->depthLabel) dm->depthLabel = NULL;
7408ba2698f1SMatthew G. Knepley       if (*label == dm->celltypeLabel) dm->celltypeLabel = NULL;
740943e45a93SVaclav Hapla       if (((PetscObject)link->label)->refct < 2) *label = NULL; /* nullify if exclusive reference */
74109566063dSJacob Faibussowitsch       PetscCall(DMLabelDestroy(&link->label));
74119566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
7412306894acSVaclav Hapla       break;
7413306894acSVaclav Hapla     }
7414306894acSVaclav Hapla   }
74157a8be351SBarry Smith   PetscCheck(hasLabel || !failNotFound, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Given label not found in DM");
74163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7417306894acSVaclav Hapla }
7418306894acSVaclav Hapla 
7419cc4c1da9SBarry Smith /*@
7420c58f1c22SToby Isaac   DMGetLabelOutput - Get the output flag for a given label
7421c58f1c22SToby Isaac 
7422c58f1c22SToby Isaac   Not Collective
7423c58f1c22SToby Isaac 
7424c58f1c22SToby Isaac   Input Parameters:
7425bb7acecfSBarry Smith + dm   - The `DM` object
7426c58f1c22SToby Isaac - name - The label name
7427c58f1c22SToby Isaac 
7428c58f1c22SToby Isaac   Output Parameter:
7429c58f1c22SToby Isaac . output - The flag for output
7430c58f1c22SToby Isaac 
7431c58f1c22SToby Isaac   Level: developer
7432c58f1c22SToby Isaac 
74331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMSetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7434c58f1c22SToby Isaac @*/
7435d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelOutput(DM dm, const char name[], PetscBool *output)
7436d71ae5a4SJacob Faibussowitsch {
74375d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7438d67d17b1SMatthew G. Knepley   const char *lname;
7439c58f1c22SToby Isaac 
7440c58f1c22SToby Isaac   PetscFunctionBegin;
7441c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
74424f572ea9SToby Isaac   PetscAssertPointer(name, 2);
74434f572ea9SToby Isaac   PetscAssertPointer(output, 3);
7444c58f1c22SToby Isaac   while (next) {
7445c58f1c22SToby Isaac     PetscBool flg;
7446c58f1c22SToby Isaac 
74479566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
74489566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &flg));
74499371c9d4SSatish Balay     if (flg) {
74509371c9d4SSatish Balay       *output = next->output;
74513ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
74529371c9d4SSatish Balay     }
7453c58f1c22SToby Isaac     next = next->next;
7454c58f1c22SToby Isaac   }
745598921bdaSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name);
7456c58f1c22SToby Isaac }
7457c58f1c22SToby Isaac 
7458cc4c1da9SBarry Smith /*@
7459bb7acecfSBarry Smith   DMSetLabelOutput - Set if a given label should be saved to a `PetscViewer` in calls to `DMView()`
7460c58f1c22SToby Isaac 
7461c58f1c22SToby Isaac   Not Collective
7462c58f1c22SToby Isaac 
7463c58f1c22SToby Isaac   Input Parameters:
7464bb7acecfSBarry Smith + dm     - The `DM` object
7465c58f1c22SToby Isaac . name   - The label name
7466bb7acecfSBarry Smith - output - `PETSC_TRUE` to save the label to the viewer
7467c58f1c22SToby Isaac 
7468c58f1c22SToby Isaac   Level: developer
7469c58f1c22SToby Isaac 
74701cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetOutputFlag()`, `DMGetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7471c58f1c22SToby Isaac @*/
7472d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelOutput(DM dm, const char name[], PetscBool output)
7473d71ae5a4SJacob Faibussowitsch {
74745d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7475d67d17b1SMatthew G. Knepley   const char *lname;
7476c58f1c22SToby Isaac 
7477c58f1c22SToby Isaac   PetscFunctionBegin;
7478c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
74794f572ea9SToby Isaac   PetscAssertPointer(name, 2);
7480c58f1c22SToby Isaac   while (next) {
7481c58f1c22SToby Isaac     PetscBool flg;
7482c58f1c22SToby Isaac 
74839566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
74849566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &flg));
74859371c9d4SSatish Balay     if (flg) {
74869371c9d4SSatish Balay       next->output = output;
74873ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
74889371c9d4SSatish Balay     }
7489c58f1c22SToby Isaac     next = next->next;
7490c58f1c22SToby Isaac   }
749198921bdaSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name);
7492c58f1c22SToby Isaac }
7493c58f1c22SToby Isaac 
7494c58f1c22SToby Isaac /*@
7495bb7acecfSBarry Smith   DMCopyLabels - Copy labels from one `DM` mesh to another `DM` with a superset of the points
7496c58f1c22SToby Isaac 
749720f4b53cSBarry Smith   Collective
7498c58f1c22SToby Isaac 
7499d8d19677SJose E. Roman   Input Parameters:
7500bb7acecfSBarry Smith + dmA   - The `DM` object with initial labels
7501bb7acecfSBarry Smith . dmB   - The `DM` object to which labels are copied
7502bb7acecfSBarry Smith . mode  - Copy labels by pointers (`PETSC_OWN_POINTER`) or duplicate them (`PETSC_COPY_VALUES`)
7503bb7acecfSBarry Smith . all   - Copy all labels including "depth", "dim", and "celltype" (`PETSC_TRUE`) which are otherwise ignored (`PETSC_FALSE`)
7504bb7acecfSBarry Smith - emode - How to behave when a `DMLabel` in the source and destination `DM`s with the same name is encountered (see `DMCopyLabelsMode`)
7505c58f1c22SToby Isaac 
7506c58f1c22SToby Isaac   Level: intermediate
7507c58f1c22SToby Isaac 
7508bb7acecfSBarry Smith   Note:
75092cbb9b06SVaclav Hapla   This is typically used when interpolating or otherwise adding to a mesh, or testing.
7510c58f1c22SToby Isaac 
75111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`
7512c58f1c22SToby Isaac @*/
7513d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyLabels(DM dmA, DM dmB, PetscCopyMode mode, PetscBool all, DMCopyLabelsMode emode)
7514d71ae5a4SJacob Faibussowitsch {
75152cbb9b06SVaclav Hapla   DMLabel     label, labelNew, labelOld;
7516c58f1c22SToby Isaac   const char *name;
7517c58f1c22SToby Isaac   PetscBool   flg;
75185d80c0bfSVaclav Hapla   DMLabelLink link;
7519c58f1c22SToby Isaac 
75205d80c0bfSVaclav Hapla   PetscFunctionBegin;
75215d80c0bfSVaclav Hapla   PetscValidHeaderSpecific(dmA, DM_CLASSID, 1);
75225d80c0bfSVaclav Hapla   PetscValidHeaderSpecific(dmB, DM_CLASSID, 2);
75235d80c0bfSVaclav Hapla   PetscValidLogicalCollectiveEnum(dmA, mode, 3);
75245d80c0bfSVaclav Hapla   PetscValidLogicalCollectiveBool(dmA, all, 4);
75257a8be351SBarry Smith   PetscCheck(mode != PETSC_USE_POINTER, PetscObjectComm((PetscObject)dmA), PETSC_ERR_SUP, "PETSC_USE_POINTER not supported for objects");
75263ba16761SJacob Faibussowitsch   if (dmA == dmB) PetscFunctionReturn(PETSC_SUCCESS);
75275d80c0bfSVaclav Hapla   for (link = dmA->labels; link; link = link->next) {
75285d80c0bfSVaclav Hapla     label = link->label;
75299566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)label, &name));
75305d80c0bfSVaclav Hapla     if (!all) {
75319566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "depth", &flg));
7532c58f1c22SToby Isaac       if (flg) continue;
75339566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "dim", &flg));
75347d5acc75SStefano Zampini       if (flg) continue;
75359566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "celltype", &flg));
7536ba2698f1SMatthew G. Knepley       if (flg) continue;
75375d80c0bfSVaclav Hapla     }
75389566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dmB, name, &labelOld));
75392cbb9b06SVaclav Hapla     if (labelOld) {
75402cbb9b06SVaclav Hapla       switch (emode) {
7541d71ae5a4SJacob Faibussowitsch       case DM_COPY_LABELS_KEEP:
7542d71ae5a4SJacob Faibussowitsch         continue;
7543d71ae5a4SJacob Faibussowitsch       case DM_COPY_LABELS_REPLACE:
7544d71ae5a4SJacob Faibussowitsch         PetscCall(DMRemoveLabelBySelf(dmB, &labelOld, PETSC_TRUE));
7545d71ae5a4SJacob Faibussowitsch         break;
7546d71ae5a4SJacob Faibussowitsch       case DM_COPY_LABELS_FAIL:
7547d71ae5a4SJacob Faibussowitsch         SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in destination DM", name);
7548d71ae5a4SJacob Faibussowitsch       default:
7549d71ae5a4SJacob Faibussowitsch         SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Unhandled DMCopyLabelsMode %d", (int)emode);
75502cbb9b06SVaclav Hapla       }
75512cbb9b06SVaclav Hapla     }
75525d80c0bfSVaclav Hapla     if (mode == PETSC_COPY_VALUES) {
75539566063dSJacob Faibussowitsch       PetscCall(DMLabelDuplicate(label, &labelNew));
75545d80c0bfSVaclav Hapla     } else {
75555d80c0bfSVaclav Hapla       labelNew = label;
75565d80c0bfSVaclav Hapla     }
75579566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dmB, labelNew));
75589566063dSJacob Faibussowitsch     if (mode == PETSC_COPY_VALUES) PetscCall(DMLabelDestroy(&labelNew));
7559c58f1c22SToby Isaac   }
75603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7561c58f1c22SToby Isaac }
7562461a15a0SLisandro Dalcin 
7563609dae6eSVaclav Hapla /*@C
7564b4028c23SStefano Zampini   DMCompareLabels - Compare labels between two `DM` objects
7565609dae6eSVaclav Hapla 
756620f4b53cSBarry Smith   Collective; No Fortran Support
7567609dae6eSVaclav Hapla 
7568609dae6eSVaclav Hapla   Input Parameters:
7569bb7acecfSBarry Smith + dm0 - First `DM` object
7570bb7acecfSBarry Smith - dm1 - Second `DM` object
7571609dae6eSVaclav Hapla 
7572a4e35b19SJacob Faibussowitsch   Output Parameters:
75735efe38ccSVaclav Hapla + equal   - (Optional) Flag whether labels of dm0 and dm1 are the same
757420f4b53cSBarry Smith - message - (Optional) Message describing the difference, or `NULL` if there is no difference
7575609dae6eSVaclav Hapla 
7576609dae6eSVaclav Hapla   Level: intermediate
7577609dae6eSVaclav Hapla 
7578609dae6eSVaclav Hapla   Notes:
7579bb7acecfSBarry Smith   The output flag equal will be the same on all processes.
7580bb7acecfSBarry Smith 
758120f4b53cSBarry Smith   If equal is passed as `NULL` and difference is found, an error is thrown on all processes.
7582bb7acecfSBarry Smith 
758320f4b53cSBarry Smith   Make sure to pass equal is `NULL` on all processes or none of them.
7584609dae6eSVaclav Hapla 
75855efe38ccSVaclav Hapla   The output message is set independently on each rank.
7586bb7acecfSBarry Smith 
7587bb7acecfSBarry Smith   message must be freed with `PetscFree()`
7588bb7acecfSBarry Smith 
758920f4b53cSBarry Smith   If message is passed as `NULL` and a difference is found, the difference description is printed to stderr in synchronized manner.
7590bb7acecfSBarry Smith 
759120f4b53cSBarry Smith   Make sure to pass message as `NULL` on all processes or no processes.
7592609dae6eSVaclav Hapla 
7593609dae6eSVaclav Hapla   Labels are matched by name. If the number of labels and their names are equal,
7594bb7acecfSBarry Smith   `DMLabelCompare()` is used to compare each pair of labels with the same name.
7595609dae6eSVaclav Hapla 
7596cc4c1da9SBarry Smith   Developer Note:
7597cc4c1da9SBarry Smith   Can automatically generate the Fortran stub because `message` must be freed with `PetscFree()`
7598cc4c1da9SBarry Smith 
75991cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`, `DMLabelCompare()`
7600609dae6eSVaclav Hapla @*/
7601d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompareLabels(DM dm0, DM dm1, PetscBool *equal, char **message)
7602d71ae5a4SJacob Faibussowitsch {
76035efe38ccSVaclav Hapla   PetscInt    n, i;
7604609dae6eSVaclav Hapla   char        msg[PETSC_MAX_PATH_LEN] = "";
76055efe38ccSVaclav Hapla   PetscBool   eq;
7606609dae6eSVaclav Hapla   MPI_Comm    comm;
76075efe38ccSVaclav Hapla   PetscMPIInt rank;
7608609dae6eSVaclav Hapla 
7609609dae6eSVaclav Hapla   PetscFunctionBegin;
7610609dae6eSVaclav Hapla   PetscValidHeaderSpecific(dm0, DM_CLASSID, 1);
7611609dae6eSVaclav Hapla   PetscValidHeaderSpecific(dm1, DM_CLASSID, 2);
7612609dae6eSVaclav Hapla   PetscCheckSameComm(dm0, 1, dm1, 2);
76134f572ea9SToby Isaac   if (equal) PetscAssertPointer(equal, 3);
76144f572ea9SToby Isaac   if (message) PetscAssertPointer(message, 4);
76159566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm0, &comm));
76169566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
76175efe38ccSVaclav Hapla   {
76185efe38ccSVaclav Hapla     PetscInt n1;
76195efe38ccSVaclav Hapla 
76209566063dSJacob Faibussowitsch     PetscCall(DMGetNumLabels(dm0, &n));
76219566063dSJacob Faibussowitsch     PetscCall(DMGetNumLabels(dm1, &n1));
76225efe38ccSVaclav Hapla     eq = (PetscBool)(n == n1);
762348a46eb9SPierre Jolivet     if (!eq) PetscCall(PetscSNPrintf(msg, sizeof(msg), "Number of labels in dm0 = %" PetscInt_FMT " != %" PetscInt_FMT " = Number of labels in dm1", n, n1));
7624712fec58SPierre Jolivet     PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm));
76255efe38ccSVaclav Hapla     if (!eq) goto finish;
76265efe38ccSVaclav Hapla   }
76275efe38ccSVaclav Hapla   for (i = 0; i < n; i++) {
7628609dae6eSVaclav Hapla     DMLabel     l0, l1;
7629609dae6eSVaclav Hapla     const char *name;
7630609dae6eSVaclav Hapla     char       *msgInner;
7631609dae6eSVaclav Hapla 
7632609dae6eSVaclav Hapla     /* Ignore label order */
76339566063dSJacob Faibussowitsch     PetscCall(DMGetLabelByNum(dm0, i, &l0));
76349566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)l0, &name));
76359566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm1, name, &l1));
7636609dae6eSVaclav Hapla     if (!l1) {
763763a3b9bcSJacob Faibussowitsch       PetscCall(PetscSNPrintf(msg, sizeof(msg), "Label \"%s\" (#%" PetscInt_FMT " in dm0) not found in dm1", name, i));
76385efe38ccSVaclav Hapla       eq = PETSC_FALSE;
76395efe38ccSVaclav Hapla       break;
7640609dae6eSVaclav Hapla     }
76419566063dSJacob Faibussowitsch     PetscCall(DMLabelCompare(comm, l0, l1, &eq, &msgInner));
76429566063dSJacob Faibussowitsch     PetscCall(PetscStrncpy(msg, msgInner, sizeof(msg)));
76439566063dSJacob Faibussowitsch     PetscCall(PetscFree(msgInner));
76445efe38ccSVaclav Hapla     if (!eq) break;
7645609dae6eSVaclav Hapla   }
7646712fec58SPierre Jolivet   PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm));
7647609dae6eSVaclav Hapla finish:
76485efe38ccSVaclav Hapla   /* If message output arg not set, print to stderr */
7649609dae6eSVaclav Hapla   if (message) {
7650609dae6eSVaclav Hapla     *message = NULL;
765148a46eb9SPierre Jolivet     if (msg[0]) PetscCall(PetscStrallocpy(msg, message));
76525efe38ccSVaclav Hapla   } else {
765348a46eb9SPierre Jolivet     if (msg[0]) PetscCall(PetscSynchronizedFPrintf(comm, PETSC_STDERR, "[%d] %s\n", rank, msg));
76549566063dSJacob Faibussowitsch     PetscCall(PetscSynchronizedFlush(comm, PETSC_STDERR));
76555efe38ccSVaclav Hapla   }
76565efe38ccSVaclav Hapla   /* If same output arg not ser and labels are not equal, throw error */
76575efe38ccSVaclav Hapla   if (equal) *equal = eq;
76587a8be351SBarry Smith   else PetscCheck(eq, comm, PETSC_ERR_ARG_INCOMP, "DMLabels are not the same in dm0 and dm1");
76593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7660609dae6eSVaclav Hapla }
7661609dae6eSVaclav Hapla 
7662d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue_Fast(DM dm, DMLabel *label, const char name[], PetscInt point, PetscInt value)
7663d71ae5a4SJacob Faibussowitsch {
7664461a15a0SLisandro Dalcin   PetscFunctionBegin;
76654f572ea9SToby Isaac   PetscAssertPointer(label, 2);
7666461a15a0SLisandro Dalcin   if (!*label) {
76679566063dSJacob Faibussowitsch     PetscCall(DMCreateLabel(dm, name));
76689566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, name, label));
7669461a15a0SLisandro Dalcin   }
76709566063dSJacob Faibussowitsch   PetscCall(DMLabelSetValue(*label, point, value));
76713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7672461a15a0SLisandro Dalcin }
7673461a15a0SLisandro Dalcin 
76740fdc7489SMatthew Knepley /*
76750fdc7489SMatthew Knepley   Many mesh programs, such as Triangle and TetGen, allow only a single label for each mesh point. Therefore, we would
76760fdc7489SMatthew Knepley   like to encode all label IDs using a single, universal label. We can do this by assigning an integer to every
76770fdc7489SMatthew Knepley   (label, id) pair in the DM.
76780fdc7489SMatthew Knepley 
76790fdc7489SMatthew Knepley   However, a mesh point can have multiple labels, so we must separate all these values. We will assign a bit range to
76800fdc7489SMatthew Knepley   each label.
76810fdc7489SMatthew Knepley */
7682d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreate(DM dm, DMUniversalLabel *universal)
7683d71ae5a4SJacob Faibussowitsch {
76840fdc7489SMatthew Knepley   DMUniversalLabel ul;
76850fdc7489SMatthew Knepley   PetscBool       *active;
76860fdc7489SMatthew Knepley   PetscInt         pStart, pEnd, p, Nl, l, m;
76870fdc7489SMatthew Knepley 
76880fdc7489SMatthew Knepley   PetscFunctionBegin;
76899566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(1, &ul));
76909566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "universal", &ul->label));
76919566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(dm, &Nl));
76929566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Nl, &active));
76930fdc7489SMatthew Knepley   ul->Nl = 0;
76940fdc7489SMatthew Knepley   for (l = 0; l < Nl; ++l) {
76950fdc7489SMatthew Knepley     PetscBool   isdepth, iscelltype;
76960fdc7489SMatthew Knepley     const char *name;
76970fdc7489SMatthew Knepley 
76989566063dSJacob Faibussowitsch     PetscCall(DMGetLabelName(dm, l, &name));
76999566063dSJacob Faibussowitsch     PetscCall(PetscStrncmp(name, "depth", 6, &isdepth));
77009566063dSJacob Faibussowitsch     PetscCall(PetscStrncmp(name, "celltype", 9, &iscelltype));
77010fdc7489SMatthew Knepley     active[l] = !(isdepth || iscelltype) ? PETSC_TRUE : PETSC_FALSE;
77020fdc7489SMatthew Knepley     if (active[l]) ++ul->Nl;
77030fdc7489SMatthew Knepley   }
77049566063dSJacob Faibussowitsch   PetscCall(PetscCalloc5(ul->Nl, &ul->names, ul->Nl, &ul->indices, ul->Nl + 1, &ul->offsets, ul->Nl + 1, &ul->bits, ul->Nl, &ul->masks));
77050fdc7489SMatthew Knepley   ul->Nv = 0;
77060fdc7489SMatthew Knepley   for (l = 0, m = 0; l < Nl; ++l) {
77070fdc7489SMatthew Knepley     DMLabel     label;
77080fdc7489SMatthew Knepley     PetscInt    nv;
77090fdc7489SMatthew Knepley     const char *name;
77100fdc7489SMatthew Knepley 
77110fdc7489SMatthew Knepley     if (!active[l]) continue;
77129566063dSJacob Faibussowitsch     PetscCall(DMGetLabelName(dm, l, &name));
77139566063dSJacob Faibussowitsch     PetscCall(DMGetLabelByNum(dm, l, &label));
77149566063dSJacob Faibussowitsch     PetscCall(DMLabelGetNumValues(label, &nv));
77159566063dSJacob Faibussowitsch     PetscCall(PetscStrallocpy(name, &ul->names[m]));
77160fdc7489SMatthew Knepley     ul->indices[m] = l;
77170fdc7489SMatthew Knepley     ul->Nv += nv;
77180fdc7489SMatthew Knepley     ul->offsets[m + 1] = nv;
77190fdc7489SMatthew Knepley     ul->bits[m + 1]    = PetscCeilReal(PetscLog2Real(nv + 1));
77200fdc7489SMatthew Knepley     ++m;
77210fdc7489SMatthew Knepley   }
77220fdc7489SMatthew Knepley   for (l = 1; l <= ul->Nl; ++l) {
77230fdc7489SMatthew Knepley     ul->offsets[l] = ul->offsets[l - 1] + ul->offsets[l];
77240fdc7489SMatthew Knepley     ul->bits[l]    = ul->bits[l - 1] + ul->bits[l];
77250fdc7489SMatthew Knepley   }
77260fdc7489SMatthew Knepley   for (l = 0; l < ul->Nl; ++l) {
77270fdc7489SMatthew Knepley     PetscInt b;
77280fdc7489SMatthew Knepley 
77290fdc7489SMatthew Knepley     ul->masks[l] = 0;
77300fdc7489SMatthew Knepley     for (b = ul->bits[l]; b < ul->bits[l + 1]; ++b) ul->masks[l] |= 1 << b;
77310fdc7489SMatthew Knepley   }
77329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ul->Nv, &ul->values));
77330fdc7489SMatthew Knepley   for (l = 0, m = 0; l < Nl; ++l) {
77340fdc7489SMatthew Knepley     DMLabel         label;
77350fdc7489SMatthew Knepley     IS              valueIS;
77360fdc7489SMatthew Knepley     const PetscInt *varr;
77370fdc7489SMatthew Knepley     PetscInt        nv, v;
77380fdc7489SMatthew Knepley 
77390fdc7489SMatthew Knepley     if (!active[l]) continue;
77409566063dSJacob Faibussowitsch     PetscCall(DMGetLabelByNum(dm, l, &label));
77419566063dSJacob Faibussowitsch     PetscCall(DMLabelGetNumValues(label, &nv));
77429566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValueIS(label, &valueIS));
77439566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(valueIS, &varr));
7744ad540459SPierre Jolivet     for (v = 0; v < nv; ++v) ul->values[ul->offsets[m] + v] = varr[v];
77459566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(valueIS, &varr));
77469566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&valueIS));
77479566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(nv, &ul->values[ul->offsets[m]]));
77480fdc7489SMatthew Knepley     ++m;
77490fdc7489SMatthew Knepley   }
77509566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
77510fdc7489SMatthew Knepley   for (p = pStart; p < pEnd; ++p) {
77520fdc7489SMatthew Knepley     PetscInt  uval   = 0;
77530fdc7489SMatthew Knepley     PetscBool marked = PETSC_FALSE;
77540fdc7489SMatthew Knepley 
77550fdc7489SMatthew Knepley     for (l = 0, m = 0; l < Nl; ++l) {
77560fdc7489SMatthew Knepley       DMLabel  label;
77570649b39aSStefano Zampini       PetscInt val, defval, loc, nv;
77580fdc7489SMatthew Knepley 
77590fdc7489SMatthew Knepley       if (!active[l]) continue;
77609566063dSJacob Faibussowitsch       PetscCall(DMGetLabelByNum(dm, l, &label));
77619566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(label, p, &val));
77629566063dSJacob Faibussowitsch       PetscCall(DMLabelGetDefaultValue(label, &defval));
77639371c9d4SSatish Balay       if (val == defval) {
77649371c9d4SSatish Balay         ++m;
77659371c9d4SSatish Balay         continue;
77669371c9d4SSatish Balay       }
77670649b39aSStefano Zampini       nv     = ul->offsets[m + 1] - ul->offsets[m];
77680fdc7489SMatthew Knepley       marked = PETSC_TRUE;
77699566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(val, nv, &ul->values[ul->offsets[m]], &loc));
777063a3b9bcSJacob Faibussowitsch       PetscCheck(loc >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Label value %" PetscInt_FMT " not found in compression array", val);
77710fdc7489SMatthew Knepley       uval += (loc + 1) << ul->bits[m];
77720fdc7489SMatthew Knepley       ++m;
77730fdc7489SMatthew Knepley     }
77749566063dSJacob Faibussowitsch     if (marked) PetscCall(DMLabelSetValue(ul->label, p, uval));
77750fdc7489SMatthew Knepley   }
77769566063dSJacob Faibussowitsch   PetscCall(PetscFree(active));
77770fdc7489SMatthew Knepley   *universal = ul;
77783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
77790fdc7489SMatthew Knepley }
77800fdc7489SMatthew Knepley 
7781d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelDestroy(DMUniversalLabel *universal)
7782d71ae5a4SJacob Faibussowitsch {
77830fdc7489SMatthew Knepley   PetscInt l;
77840fdc7489SMatthew Knepley 
77850fdc7489SMatthew Knepley   PetscFunctionBegin;
77869566063dSJacob Faibussowitsch   for (l = 0; l < (*universal)->Nl; ++l) PetscCall(PetscFree((*universal)->names[l]));
77879566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&(*universal)->label));
77889566063dSJacob Faibussowitsch   PetscCall(PetscFree5((*universal)->names, (*universal)->indices, (*universal)->offsets, (*universal)->bits, (*universal)->masks));
77899566063dSJacob Faibussowitsch   PetscCall(PetscFree((*universal)->values));
77909566063dSJacob Faibussowitsch   PetscCall(PetscFree(*universal));
77910fdc7489SMatthew Knepley   *universal = NULL;
77923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
77930fdc7489SMatthew Knepley }
77940fdc7489SMatthew Knepley 
7795d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelGetLabel(DMUniversalLabel ul, DMLabel *ulabel)
7796d71ae5a4SJacob Faibussowitsch {
77970fdc7489SMatthew Knepley   PetscFunctionBegin;
77984f572ea9SToby Isaac   PetscAssertPointer(ulabel, 2);
77990fdc7489SMatthew Knepley   *ulabel = ul->label;
78003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
78010fdc7489SMatthew Knepley }
78020fdc7489SMatthew Knepley 
7803d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreateLabels(DMUniversalLabel ul, PetscBool preserveOrder, DM dm)
7804d71ae5a4SJacob Faibussowitsch {
78050fdc7489SMatthew Knepley   PetscInt Nl = ul->Nl, l;
78060fdc7489SMatthew Knepley 
78070fdc7489SMatthew Knepley   PetscFunctionBegin;
7808064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(dm, DM_CLASSID, 3);
78090fdc7489SMatthew Knepley   for (l = 0; l < Nl; ++l) {
78109566063dSJacob Faibussowitsch     if (preserveOrder) PetscCall(DMCreateLabelAtIndex(dm, ul->indices[l], ul->names[l]));
78119566063dSJacob Faibussowitsch     else PetscCall(DMCreateLabel(dm, ul->names[l]));
78120fdc7489SMatthew Knepley   }
78130fdc7489SMatthew Knepley   if (preserveOrder) {
78140fdc7489SMatthew Knepley     for (l = 0; l < ul->Nl; ++l) {
78150fdc7489SMatthew Knepley       const char *name;
78160fdc7489SMatthew Knepley       PetscBool   match;
78170fdc7489SMatthew Knepley 
78189566063dSJacob Faibussowitsch       PetscCall(DMGetLabelName(dm, ul->indices[l], &name));
78199566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, ul->names[l], &match));
782063a3b9bcSJacob Faibussowitsch       PetscCheck(match, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Label %" PetscInt_FMT " name %s does not match new name %s", l, name, ul->names[l]);
78210fdc7489SMatthew Knepley     }
78220fdc7489SMatthew Knepley   }
78233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
78240fdc7489SMatthew Knepley }
78250fdc7489SMatthew Knepley 
7826d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelSetLabelValue(DMUniversalLabel ul, DM dm, PetscBool useIndex, PetscInt p, PetscInt value)
7827d71ae5a4SJacob Faibussowitsch {
78280fdc7489SMatthew Knepley   PetscInt l;
78290fdc7489SMatthew Knepley 
78300fdc7489SMatthew Knepley   PetscFunctionBegin;
78310fdc7489SMatthew Knepley   for (l = 0; l < ul->Nl; ++l) {
78320fdc7489SMatthew Knepley     DMLabel  label;
78330fdc7489SMatthew Knepley     PetscInt lval = (value & ul->masks[l]) >> ul->bits[l];
78340fdc7489SMatthew Knepley 
78350fdc7489SMatthew Knepley     if (lval) {
78369566063dSJacob Faibussowitsch       if (useIndex) PetscCall(DMGetLabelByNum(dm, ul->indices[l], &label));
78379566063dSJacob Faibussowitsch       else PetscCall(DMGetLabel(dm, ul->names[l], &label));
78389566063dSJacob Faibussowitsch       PetscCall(DMLabelSetValue(label, p, ul->values[ul->offsets[l] + lval - 1]));
78390fdc7489SMatthew Knepley     }
78400fdc7489SMatthew Knepley   }
78413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
78420fdc7489SMatthew Knepley }
7843a8fb8f29SToby Isaac 
7844a8fb8f29SToby Isaac /*@
7845bb7acecfSBarry Smith   DMGetCoarseDM - Get the coarse `DM`from which this `DM` was obtained by refinement
7846bb7acecfSBarry Smith 
784720f4b53cSBarry Smith   Not Collective
7848a8fb8f29SToby Isaac 
7849a8fb8f29SToby Isaac   Input Parameter:
7850bb7acecfSBarry Smith . dm - The `DM` object
7851a8fb8f29SToby Isaac 
7852a8fb8f29SToby Isaac   Output Parameter:
7853bb7acecfSBarry Smith . cdm - The coarse `DM`
7854a8fb8f29SToby Isaac 
7855a8fb8f29SToby Isaac   Level: intermediate
7856a8fb8f29SToby Isaac 
78571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetCoarseDM()`, `DMCoarsen()`
7858a8fb8f29SToby Isaac @*/
7859d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarseDM(DM dm, DM *cdm)
7860d71ae5a4SJacob Faibussowitsch {
7861a8fb8f29SToby Isaac   PetscFunctionBegin;
7862a8fb8f29SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
78634f572ea9SToby Isaac   PetscAssertPointer(cdm, 2);
7864a8fb8f29SToby Isaac   *cdm = dm->coarseMesh;
78653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7866a8fb8f29SToby Isaac }
7867a8fb8f29SToby Isaac 
7868a8fb8f29SToby Isaac /*@
7869bb7acecfSBarry Smith   DMSetCoarseDM - Set the coarse `DM` from which this `DM` was obtained by refinement
7870a8fb8f29SToby Isaac 
7871a8fb8f29SToby Isaac   Input Parameters:
7872bb7acecfSBarry Smith + dm  - The `DM` object
7873bb7acecfSBarry Smith - cdm - The coarse `DM`
7874a8fb8f29SToby Isaac 
7875a8fb8f29SToby Isaac   Level: intermediate
7876a8fb8f29SToby Isaac 
7877bb7acecfSBarry Smith   Note:
7878bb7acecfSBarry Smith   Normally this is set automatically by `DMRefine()`
7879bb7acecfSBarry Smith 
78801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCoarseDM()`, `DMCoarsen()`, `DMSetRefine()`, `DMSetFineDM()`
7881a8fb8f29SToby Isaac @*/
7882d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarseDM(DM dm, DM cdm)
7883d71ae5a4SJacob Faibussowitsch {
7884a8fb8f29SToby Isaac   PetscFunctionBegin;
7885a8fb8f29SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7886a8fb8f29SToby Isaac   if (cdm) PetscValidHeaderSpecific(cdm, DM_CLASSID, 2);
788789d734beSBarry Smith   if (dm == cdm) cdm = NULL;
78889566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)cdm));
78899566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dm->coarseMesh));
7890a8fb8f29SToby Isaac   dm->coarseMesh = cdm;
78913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7892a8fb8f29SToby Isaac }
7893a8fb8f29SToby Isaac 
789488bdff64SToby Isaac /*@
7895bb7acecfSBarry Smith   DMGetFineDM - Get the fine mesh from which this `DM` was obtained by coarsening
789688bdff64SToby Isaac 
789788bdff64SToby Isaac   Input Parameter:
7898bb7acecfSBarry Smith . dm - The `DM` object
789988bdff64SToby Isaac 
790088bdff64SToby Isaac   Output Parameter:
7901bb7acecfSBarry Smith . fdm - The fine `DM`
790288bdff64SToby Isaac 
790388bdff64SToby Isaac   Level: intermediate
790488bdff64SToby Isaac 
79051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetFineDM()`, `DMCoarsen()`, `DMRefine()`
790688bdff64SToby Isaac @*/
7907d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFineDM(DM dm, DM *fdm)
7908d71ae5a4SJacob Faibussowitsch {
790988bdff64SToby Isaac   PetscFunctionBegin;
791088bdff64SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
79114f572ea9SToby Isaac   PetscAssertPointer(fdm, 2);
791288bdff64SToby Isaac   *fdm = dm->fineMesh;
79133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
791488bdff64SToby Isaac }
791588bdff64SToby Isaac 
791688bdff64SToby Isaac /*@
7917bb7acecfSBarry Smith   DMSetFineDM - Set the fine mesh from which this was obtained by coarsening
791888bdff64SToby Isaac 
791988bdff64SToby Isaac   Input Parameters:
7920bb7acecfSBarry Smith + dm  - The `DM` object
7921bb7acecfSBarry Smith - fdm - The fine `DM`
792288bdff64SToby Isaac 
7923bb7acecfSBarry Smith   Level: developer
792488bdff64SToby Isaac 
7925bb7acecfSBarry Smith   Note:
7926bb7acecfSBarry Smith   Normally this is set automatically by `DMCoarsen()`
7927bb7acecfSBarry Smith 
79281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFineDM()`, `DMCoarsen()`, `DMRefine()`
792988bdff64SToby Isaac @*/
7930d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFineDM(DM dm, DM fdm)
7931d71ae5a4SJacob Faibussowitsch {
793288bdff64SToby Isaac   PetscFunctionBegin;
793388bdff64SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
793488bdff64SToby Isaac   if (fdm) PetscValidHeaderSpecific(fdm, DM_CLASSID, 2);
793589d734beSBarry Smith   if (dm == fdm) fdm = NULL;
79369566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)fdm));
79379566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dm->fineMesh));
793888bdff64SToby Isaac   dm->fineMesh = fdm;
79393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
794088bdff64SToby Isaac }
794188bdff64SToby Isaac 
7942a6ba4734SToby Isaac /*@C
7943bb7acecfSBarry Smith   DMAddBoundary - Add a boundary condition to a model represented by a `DM`
7944a6ba4734SToby Isaac 
794520f4b53cSBarry Smith   Collective
7946783e2ec8SMatthew G. Knepley 
7947a6ba4734SToby Isaac   Input Parameters:
7948bb7acecfSBarry Smith + dm       - The `DM`, with a `PetscDS` that matches the problem being constrained
7949bb7acecfSBarry Smith . type     - The type of condition, e.g. `DM_BC_ESSENTIAL_ANALYTIC`, `DM_BC_ESSENTIAL_FIELD` (Dirichlet), or `DM_BC_NATURAL` (Neumann)
7950a6ba4734SToby Isaac . name     - The BC name
795145480ffeSMatthew G. Knepley . label    - The label defining constrained points
7952bb7acecfSBarry Smith . Nv       - The number of `DMLabel` values for constrained points
795345480ffeSMatthew G. Knepley . values   - An array of values for constrained points
7954a6ba4734SToby Isaac . field    - The field to constrain
795545480ffeSMatthew G. Knepley . Nc       - The number of constrained field components (0 will constrain all fields)
7956a6ba4734SToby Isaac . comps    - An array of constrained component numbers
7957a6ba4734SToby Isaac . bcFunc   - A pointwise function giving boundary values
795856cf3b9cSMatthew G. Knepley . bcFunc_t - A pointwise function giving the time deriative of the boundary values, or NULL
7959a6ba4734SToby Isaac - ctx      - An optional user context for bcFunc
7960a6ba4734SToby Isaac 
796145480ffeSMatthew G. Knepley   Output Parameter:
796245480ffeSMatthew G. Knepley . bd - (Optional) Boundary number
796345480ffeSMatthew G. Knepley 
7964a6ba4734SToby Isaac   Options Database Keys:
7965a6ba4734SToby Isaac + -bc_<boundary name> <num>      - Overrides the boundary ids
7966a6ba4734SToby Isaac - -bc_<boundary name>_comp <num> - Overrides the boundary components
7967a6ba4734SToby Isaac 
796820f4b53cSBarry Smith   Level: intermediate
796920f4b53cSBarry Smith 
7970bb7acecfSBarry Smith   Notes:
7971aeebefc2SPierre Jolivet   Both bcFunc and bcFunc_t will depend on the boundary condition type. If the type if `DM_BC_ESSENTIAL`, then the calling sequence is\:
797273ff1848SBarry Smith .vb
797373ff1848SBarry Smith  void bcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[])
797473ff1848SBarry Smith .ve
797556cf3b9cSMatthew G. Knepley 
7976a4e35b19SJacob Faibussowitsch   If the type is `DM_BC_ESSENTIAL_FIELD` or other _FIELD value, then the calling sequence is\:
797756cf3b9cSMatthew G. Knepley 
797820f4b53cSBarry Smith .vb
797920f4b53cSBarry Smith   void bcFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux,
798020f4b53cSBarry Smith               const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
798120f4b53cSBarry Smith               const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
798220f4b53cSBarry Smith               PetscReal time, const PetscReal x[], PetscScalar bcval[])
798320f4b53cSBarry Smith .ve
798456cf3b9cSMatthew G. Knepley + dim - the spatial dimension
798556cf3b9cSMatthew G. Knepley . Nf - the number of fields
798656cf3b9cSMatthew G. Knepley . uOff - the offset into u[] and u_t[] for each field
798756cf3b9cSMatthew G. Knepley . uOff_x - the offset into u_x[] for each field
798856cf3b9cSMatthew G. Knepley . u - each field evaluated at the current point
798956cf3b9cSMatthew G. Knepley . u_t - the time derivative of each field evaluated at the current point
799056cf3b9cSMatthew G. Knepley . u_x - the gradient of each field evaluated at the current point
799156cf3b9cSMatthew G. Knepley . aOff - the offset into a[] and a_t[] for each auxiliary field
799256cf3b9cSMatthew G. Knepley . aOff_x - the offset into a_x[] for each auxiliary field
799356cf3b9cSMatthew G. Knepley . a - each auxiliary field evaluated at the current point
799456cf3b9cSMatthew G. Knepley . a_t - the time derivative of each auxiliary field evaluated at the current point
799556cf3b9cSMatthew G. Knepley . a_x - the gradient of auxiliary each field evaluated at the current point
799656cf3b9cSMatthew G. Knepley . t - current time
799756cf3b9cSMatthew G. Knepley . x - coordinates of the current point
799856cf3b9cSMatthew G. Knepley . numConstants - number of constant parameters
799956cf3b9cSMatthew G. Knepley . constants - constant parameters
800056cf3b9cSMatthew G. Knepley - bcval - output values at the current point
800156cf3b9cSMatthew G. Knepley 
80021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DSGetBoundary()`, `PetscDSAddBoundary()`
8003a6ba4734SToby Isaac @*/
8004d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddBoundary(DM dm, DMBoundaryConditionType type, const char name[], DMLabel label, PetscInt Nv, const PetscInt values[], PetscInt field, PetscInt Nc, const PetscInt comps[], void (*bcFunc)(void), void (*bcFunc_t)(void), void *ctx, PetscInt *bd)
8005d71ae5a4SJacob Faibussowitsch {
8006e5e52638SMatthew G. Knepley   PetscDS ds;
8007a6ba4734SToby Isaac 
8008a6ba4734SToby Isaac   PetscFunctionBegin;
8009a6ba4734SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8010783e2ec8SMatthew G. Knepley   PetscValidLogicalCollectiveEnum(dm, type, 2);
801145480ffeSMatthew G. Knepley   PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 4);
801245480ffeSMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, Nv, 5);
801345480ffeSMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, field, 7);
801445480ffeSMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, Nc, 8);
801501a5d20dSJed Brown   PetscCheck(!dm->localSection, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot add boundary to DM after creating local section");
80169566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &ds));
8017799db056SMatthew G. Knepley   /* Complete label */
8018799db056SMatthew G. Knepley   if (label) {
8019799db056SMatthew G. Knepley     PetscObject  obj;
8020799db056SMatthew G. Knepley     PetscClassId id;
8021799db056SMatthew G. Knepley 
8022799db056SMatthew G. Knepley     PetscCall(DMGetField(dm, field, NULL, &obj));
8023799db056SMatthew G. Knepley     PetscCall(PetscObjectGetClassId(obj, &id));
8024799db056SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
8025799db056SMatthew G. Knepley       DM plex;
8026799db056SMatthew G. Knepley 
8027799db056SMatthew G. Knepley       PetscCall(DMConvert(dm, DMPLEX, &plex));
8028799db056SMatthew G. Knepley       if (plex) PetscCall(DMPlexLabelComplete(plex, label));
8029799db056SMatthew G. Knepley       PetscCall(DMDestroy(&plex));
8030799db056SMatthew G. Knepley     }
8031799db056SMatthew G. Knepley   }
80329566063dSJacob Faibussowitsch   PetscCall(PetscDSAddBoundary(ds, type, name, label, Nv, values, field, Nc, comps, bcFunc, bcFunc_t, ctx, bd));
80333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8034a6ba4734SToby Isaac }
8035a6ba4734SToby Isaac 
803645480ffeSMatthew G. Knepley /* TODO Remove this since now the structures are the same */
8037d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPopulateBoundary(DM dm)
8038d71ae5a4SJacob Faibussowitsch {
8039e5e52638SMatthew G. Knepley   PetscDS     ds;
8040dff059c6SToby Isaac   DMBoundary *lastnext;
8041e6f8dbb6SToby Isaac   DSBoundary  dsbound;
8042e6f8dbb6SToby Isaac 
8043e6f8dbb6SToby Isaac   PetscFunctionBegin;
80449566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &ds));
8045e5e52638SMatthew G. Knepley   dsbound = ds->boundary;
804647a1f5adSToby Isaac   if (dm->boundary) {
804747a1f5adSToby Isaac     DMBoundary next = dm->boundary;
804847a1f5adSToby Isaac 
804947a1f5adSToby Isaac     /* quick check to see if the PetscDS has changed */
80503ba16761SJacob Faibussowitsch     if (next->dsboundary == dsbound) PetscFunctionReturn(PETSC_SUCCESS);
805147a1f5adSToby Isaac     /* the PetscDS has changed: tear down and rebuild */
805247a1f5adSToby Isaac     while (next) {
805347a1f5adSToby Isaac       DMBoundary b = next;
805447a1f5adSToby Isaac 
805547a1f5adSToby Isaac       next = b->next;
80569566063dSJacob Faibussowitsch       PetscCall(PetscFree(b));
8057a6ba4734SToby Isaac     }
805847a1f5adSToby Isaac     dm->boundary = NULL;
8059a6ba4734SToby Isaac   }
806047a1f5adSToby Isaac 
8061f4f49eeaSPierre Jolivet   lastnext = &dm->boundary;
8062e6f8dbb6SToby Isaac   while (dsbound) {
8063e6f8dbb6SToby Isaac     DMBoundary dmbound;
8064e6f8dbb6SToby Isaac 
80659566063dSJacob Faibussowitsch     PetscCall(PetscNew(&dmbound));
8066e6f8dbb6SToby Isaac     dmbound->dsboundary = dsbound;
806745480ffeSMatthew G. Knepley     dmbound->label      = dsbound->label;
806847a1f5adSToby Isaac     /* push on the back instead of the front so that it is in the same order as in the PetscDS */
8069dff059c6SToby Isaac     *lastnext = dmbound;
8070f4f49eeaSPierre Jolivet     lastnext  = &dmbound->next;
8071dff059c6SToby Isaac     dsbound   = dsbound->next;
8072a6ba4734SToby Isaac   }
80733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8074a6ba4734SToby Isaac }
8075a6ba4734SToby Isaac 
8076bb7acecfSBarry Smith /* TODO: missing manual page */
8077d71ae5a4SJacob Faibussowitsch PetscErrorCode DMIsBoundaryPoint(DM dm, PetscInt point, PetscBool *isBd)
8078d71ae5a4SJacob Faibussowitsch {
8079b95f2879SToby Isaac   DMBoundary b;
8080a6ba4734SToby Isaac 
8081a6ba4734SToby Isaac   PetscFunctionBegin;
8082a6ba4734SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
80834f572ea9SToby Isaac   PetscAssertPointer(isBd, 3);
8084a6ba4734SToby Isaac   *isBd = PETSC_FALSE;
80859566063dSJacob Faibussowitsch   PetscCall(DMPopulateBoundary(dm));
8086b95f2879SToby Isaac   b = dm->boundary;
8087a6ba4734SToby Isaac   while (b && !(*isBd)) {
8088e6f8dbb6SToby Isaac     DMLabel    label = b->label;
8089e6f8dbb6SToby Isaac     DSBoundary dsb   = b->dsboundary;
8090a6ba4734SToby Isaac     PetscInt   i;
8091a6ba4734SToby Isaac 
809245480ffeSMatthew G. Knepley     if (label) {
80939566063dSJacob Faibussowitsch       for (i = 0; i < dsb->Nv && !(*isBd); ++i) PetscCall(DMLabelStratumHasPoint(label, dsb->values[i], point, isBd));
8094a6ba4734SToby Isaac     }
8095a6ba4734SToby Isaac     b = b->next;
8096a6ba4734SToby Isaac   }
80973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8098a6ba4734SToby Isaac }
80994d6f44ffSToby Isaac 
81004d6f44ffSToby Isaac /*@C
8101bb7acecfSBarry Smith   DMProjectFunction - This projects the given function into the function space provided by a `DM`, putting the coefficients in a global vector.
8102a6e0b375SMatthew G. Knepley 
810320f4b53cSBarry Smith   Collective
81044d6f44ffSToby Isaac 
81054d6f44ffSToby Isaac   Input Parameters:
8106bb7acecfSBarry Smith + dm    - The `DM`
81070709b2feSToby Isaac . time  - The time
81084d6f44ffSToby Isaac . funcs - The coordinate functions to evaluate, one per field
81094d6f44ffSToby Isaac . ctxs  - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
81104d6f44ffSToby Isaac - mode  - The insertion mode for values
81114d6f44ffSToby Isaac 
81124d6f44ffSToby Isaac   Output Parameter:
81134d6f44ffSToby Isaac . X - vector
81144d6f44ffSToby Isaac 
811520f4b53cSBarry Smith   Calling sequence of `funcs`:
81164d6f44ffSToby Isaac + dim  - The spatial dimension
81178ec8862eSJed Brown . time - The time at which to sample
81184d6f44ffSToby Isaac . x    - The coordinates
811977b739a6SMatthew Knepley . Nc   - The number of components
81204d6f44ffSToby Isaac . u    - The output field values
81214d6f44ffSToby Isaac - ctx  - optional user-defined function context
81224d6f44ffSToby Isaac 
81234d6f44ffSToby Isaac   Level: developer
81244d6f44ffSToby Isaac 
8125bb7acecfSBarry Smith   Developer Notes:
8126bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8127bb7acecfSBarry Smith 
8128bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8129bb7acecfSBarry Smith 
81301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
81314d6f44ffSToby Isaac @*/
8132a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunction(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X)
8133d71ae5a4SJacob Faibussowitsch {
81344d6f44ffSToby Isaac   Vec localX;
81354d6f44ffSToby Isaac 
81364d6f44ffSToby Isaac   PetscFunctionBegin;
81374d6f44ffSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8138708be2fdSJed Brown   PetscCall(PetscLogEventBegin(DM_ProjectFunction, dm, X, 0, 0));
81399566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
8140f60fa741SMatthew G. Knepley   PetscCall(VecSet(localX, 0.));
81419566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, mode, localX));
81429566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
81439566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
81449566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
8145708be2fdSJed Brown   PetscCall(PetscLogEventEnd(DM_ProjectFunction, dm, X, 0, 0));
81463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
81474d6f44ffSToby Isaac }
81484d6f44ffSToby Isaac 
8149a6e0b375SMatthew G. Knepley /*@C
8150bb7acecfSBarry Smith   DMProjectFunctionLocal - This projects the given function into the function space provided by a `DM`, putting the coefficients in a local vector.
8151a6e0b375SMatthew G. Knepley 
815220f4b53cSBarry Smith   Not Collective
8153a6e0b375SMatthew G. Knepley 
8154a6e0b375SMatthew G. Knepley   Input Parameters:
8155bb7acecfSBarry Smith + dm    - The `DM`
8156a6e0b375SMatthew G. Knepley . time  - The time
8157a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field
8158a6e0b375SMatthew G. Knepley . ctxs  - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
8159a6e0b375SMatthew G. Knepley - mode  - The insertion mode for values
8160a6e0b375SMatthew G. Knepley 
8161a6e0b375SMatthew G. Knepley   Output Parameter:
8162a6e0b375SMatthew G. Knepley . localX - vector
8163a6e0b375SMatthew G. Knepley 
816420f4b53cSBarry Smith   Calling sequence of `funcs`:
8165a6e0b375SMatthew G. Knepley + dim  - The spatial dimension
8166a4e35b19SJacob Faibussowitsch . time - The current timestep
8167a6e0b375SMatthew G. Knepley . x    - The coordinates
816877b739a6SMatthew Knepley . Nc   - The number of components
8169a6e0b375SMatthew G. Knepley . u    - The output field values
8170a6e0b375SMatthew G. Knepley - ctx  - optional user-defined function context
8171a6e0b375SMatthew G. Knepley 
8172a6e0b375SMatthew G. Knepley   Level: developer
8173a6e0b375SMatthew G. Knepley 
8174bb7acecfSBarry Smith   Developer Notes:
8175bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8176bb7acecfSBarry Smith 
8177bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8178bb7acecfSBarry Smith 
81791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
8180a6e0b375SMatthew G. Knepley @*/
8181a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX)
8182d71ae5a4SJacob Faibussowitsch {
81834d6f44ffSToby Isaac   PetscFunctionBegin;
81844d6f44ffSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8185064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 6);
8186fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectfunctionlocal, time, funcs, ctxs, mode, localX);
81873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
81884d6f44ffSToby Isaac }
81894d6f44ffSToby Isaac 
8190a6e0b375SMatthew G. Knepley /*@C
8191bb7acecfSBarry Smith   DMProjectFunctionLabel - This projects the given function into the function space provided by the `DM`, putting the coefficients in a global vector, setting values only for points in the given label.
8192a6e0b375SMatthew G. Knepley 
819320f4b53cSBarry Smith   Collective
8194a6e0b375SMatthew G. Knepley 
8195a6e0b375SMatthew G. Knepley   Input Parameters:
8196bb7acecfSBarry Smith + dm     - The `DM`
8197a6e0b375SMatthew G. Knepley . time   - The time
8198a4e35b19SJacob Faibussowitsch . numIds - The number of ids
8199a4e35b19SJacob Faibussowitsch . ids    - The ids
8200a4e35b19SJacob Faibussowitsch . Nc     - The number of components
8201a4e35b19SJacob Faibussowitsch . comps  - The components
8202bb7acecfSBarry Smith . label  - The `DMLabel` selecting the portion of the mesh for projection
8203a6e0b375SMatthew G. Knepley . funcs  - The coordinate functions to evaluate, one per field
8204bb7acecfSBarry Smith . ctxs   - Optional array of contexts to pass to each coordinate function.  ctxs may be null.
8205a6e0b375SMatthew G. Knepley - mode   - The insertion mode for values
8206a6e0b375SMatthew G. Knepley 
8207a6e0b375SMatthew G. Knepley   Output Parameter:
8208a6e0b375SMatthew G. Knepley . X - vector
8209a6e0b375SMatthew G. Knepley 
821020f4b53cSBarry Smith   Calling sequence of `funcs`:
8211a6e0b375SMatthew G. Knepley + dim  - The spatial dimension
8212a4e35b19SJacob Faibussowitsch . time - The current timestep
8213a6e0b375SMatthew G. Knepley . x    - The coordinates
821477b739a6SMatthew Knepley . Nc   - The number of components
8215a6e0b375SMatthew G. Knepley . u    - The output field values
8216a6e0b375SMatthew G. Knepley - ctx  - optional user-defined function context
8217a6e0b375SMatthew G. Knepley 
8218a6e0b375SMatthew G. Knepley   Level: developer
8219a6e0b375SMatthew G. Knepley 
8220bb7acecfSBarry Smith   Developer Notes:
8221bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8222bb7acecfSBarry Smith 
8223bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8224bb7acecfSBarry Smith 
82251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`, `DMComputeL2Diff()`
8226a6e0b375SMatthew G. Knepley @*/
8227a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X)
8228d71ae5a4SJacob Faibussowitsch {
82292c53366bSMatthew G. Knepley   Vec localX;
82302c53366bSMatthew G. Knepley 
82312c53366bSMatthew G. Knepley   PetscFunctionBegin;
82322c53366bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
82339566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
8234f60fa741SMatthew G. Knepley   PetscCall(VecSet(localX, 0.));
82359566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX));
82369566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
82379566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
82389566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
82393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
82402c53366bSMatthew G. Knepley }
82412c53366bSMatthew G. Knepley 
8242a6e0b375SMatthew G. Knepley /*@C
8243bb7acecfSBarry Smith   DMProjectFunctionLabelLocal - This projects the given function into the function space provided by the `DM`, putting the coefficients in a local vector, setting values only for points in the given label.
8244a6e0b375SMatthew G. Knepley 
824520f4b53cSBarry Smith   Not Collective
8246a6e0b375SMatthew G. Knepley 
8247a6e0b375SMatthew G. Knepley   Input Parameters:
8248bb7acecfSBarry Smith + dm     - The `DM`
8249a6e0b375SMatthew G. Knepley . time   - The time
8250bb7acecfSBarry Smith . label  - The `DMLabel` selecting the portion of the mesh for projection
8251a4e35b19SJacob Faibussowitsch . numIds - The number of ids
8252a4e35b19SJacob Faibussowitsch . ids    - The ids
8253a4e35b19SJacob Faibussowitsch . Nc     - The number of components
8254a4e35b19SJacob Faibussowitsch . comps  - The components
8255a6e0b375SMatthew G. Knepley . funcs  - The coordinate functions to evaluate, one per field
8256a6e0b375SMatthew G. Knepley . ctxs   - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
8257a6e0b375SMatthew G. Knepley - mode   - The insertion mode for values
8258a6e0b375SMatthew G. Knepley 
8259a6e0b375SMatthew G. Knepley   Output Parameter:
8260a6e0b375SMatthew G. Knepley . localX - vector
8261a6e0b375SMatthew G. Knepley 
826220f4b53cSBarry Smith   Calling sequence of `funcs`:
8263a6e0b375SMatthew G. Knepley + dim  - The spatial dimension
8264a4e35b19SJacob Faibussowitsch . time - The current time
8265a6e0b375SMatthew G. Knepley . x    - The coordinates
826677b739a6SMatthew Knepley . Nc   - The number of components
8267a6e0b375SMatthew G. Knepley . u    - The output field values
8268a6e0b375SMatthew G. Knepley - ctx  - optional user-defined function context
8269a6e0b375SMatthew G. Knepley 
8270a6e0b375SMatthew G. Knepley   Level: developer
8271a6e0b375SMatthew G. Knepley 
8272bb7acecfSBarry Smith   Developer Notes:
8273bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8274bb7acecfSBarry Smith 
8275bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8276bb7acecfSBarry Smith 
82771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
8278a6e0b375SMatthew G. Knepley @*/
8279a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX)
8280d71ae5a4SJacob Faibussowitsch {
82814d6f44ffSToby Isaac   PetscFunctionBegin;
82824d6f44ffSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8283064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
8284fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectfunctionlabellocal, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX);
82853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
82864d6f44ffSToby Isaac }
82872716604bSToby Isaac 
8288a6e0b375SMatthew G. Knepley /*@C
8289bb7acecfSBarry Smith   DMProjectFieldLocal - This projects the given function of the input fields into the function space provided by the `DM`, putting the coefficients in a local vector.
8290a6e0b375SMatthew G. Knepley 
829120f4b53cSBarry Smith   Not Collective
8292a6e0b375SMatthew G. Knepley 
8293a6e0b375SMatthew G. Knepley   Input Parameters:
8294bb7acecfSBarry Smith + dm     - The `DM`
8295a6e0b375SMatthew G. Knepley . time   - The time
829620f4b53cSBarry Smith . localU - The input field vector; may be `NULL` if projection is defined purely by coordinates
8297a6e0b375SMatthew G. Knepley . funcs  - The functions to evaluate, one per field
8298a6e0b375SMatthew G. Knepley - mode   - The insertion mode for values
8299a6e0b375SMatthew G. Knepley 
8300a6e0b375SMatthew G. Knepley   Output Parameter:
8301a6e0b375SMatthew G. Knepley . localX - The output vector
8302a6e0b375SMatthew G. Knepley 
830320f4b53cSBarry Smith   Calling sequence of `funcs`:
8304a6e0b375SMatthew G. Knepley + dim          - The spatial dimension
8305a6e0b375SMatthew G. Knepley . Nf           - The number of input fields
8306a6e0b375SMatthew G. Knepley . NfAux        - The number of input auxiliary fields
8307a6e0b375SMatthew G. Knepley . uOff         - The offset of each field in u[]
8308a6e0b375SMatthew G. Knepley . uOff_x       - The offset of each field in u_x[]
8309a6e0b375SMatthew G. Knepley . u            - The field values at this point in space
8310a6e0b375SMatthew G. Knepley . u_t          - The field time derivative at this point in space (or NULL)
8311a6e0b375SMatthew G. Knepley . u_x          - The field derivatives at this point in space
8312a6e0b375SMatthew G. Knepley . aOff         - The offset of each auxiliary field in u[]
8313a6e0b375SMatthew G. Knepley . aOff_x       - The offset of each auxiliary field in u_x[]
8314a6e0b375SMatthew G. Knepley . a            - The auxiliary field values at this point in space
8315a6e0b375SMatthew G. Knepley . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8316a6e0b375SMatthew G. Knepley . a_x          - The auxiliary field derivatives at this point in space
8317a6e0b375SMatthew G. Knepley . t            - The current time
8318a6e0b375SMatthew G. Knepley . x            - The coordinates of this point
8319a6e0b375SMatthew G. Knepley . numConstants - The number of constants
8320a6e0b375SMatthew G. Knepley . constants    - The value of each constant
8321a6e0b375SMatthew G. Knepley - f            - The value of the function at this point in space
8322a6e0b375SMatthew G. Knepley 
832373ff1848SBarry Smith   Level: intermediate
832473ff1848SBarry Smith 
8325bb7acecfSBarry Smith   Note:
8326bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8327bb7acecfSBarry Smith   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8328bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8329a6e0b375SMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8330a6e0b375SMatthew G. Knepley 
8331bb7acecfSBarry Smith   Developer Notes:
8332bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8333bb7acecfSBarry Smith 
8334bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8335bb7acecfSBarry Smith 
8336a4e35b19SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`,
8337a4e35b19SJacob Faibussowitsch `DMProjectFunction()`, `DMComputeL2Diff()`
8338a6e0b375SMatthew G. Knepley @*/
8339a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLocal(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX)
8340d71ae5a4SJacob Faibussowitsch {
83418c6c5593SMatthew G. Knepley   PetscFunctionBegin;
83428c6c5593SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8343eb8f539aSJed Brown   if (localU) PetscValidHeaderSpecific(localU, VEC_CLASSID, 3);
83448c6c5593SMatthew G. Knepley   PetscValidHeaderSpecific(localX, VEC_CLASSID, 6);
8345fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectfieldlocal, time, localU, funcs, mode, localX);
83463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
83478c6c5593SMatthew G. Knepley }
83488c6c5593SMatthew G. Knepley 
8349a6e0b375SMatthew G. Knepley /*@C
8350a6e0b375SMatthew G. Knepley   DMProjectFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain specified by the label.
8351a6e0b375SMatthew G. Knepley 
835220f4b53cSBarry Smith   Not Collective
8353a6e0b375SMatthew G. Knepley 
8354a6e0b375SMatthew G. Knepley   Input Parameters:
8355bb7acecfSBarry Smith + dm     - The `DM`
8356a6e0b375SMatthew G. Knepley . time   - The time
8357bb7acecfSBarry Smith . label  - The `DMLabel` marking the portion of the domain to output
8358a6e0b375SMatthew G. Knepley . numIds - The number of label ids to use
8359a6e0b375SMatthew G. Knepley . ids    - The label ids to use for marking
8360bb7acecfSBarry Smith . Nc     - The number of components to set in the output, or `PETSC_DETERMINE` for all components
836120f4b53cSBarry Smith . comps  - The components to set in the output, or `NULL` for all components
8362a6e0b375SMatthew G. Knepley . localU - The input field vector
8363a6e0b375SMatthew G. Knepley . funcs  - The functions to evaluate, one per field
8364a6e0b375SMatthew G. Knepley - mode   - The insertion mode for values
8365a6e0b375SMatthew G. Knepley 
8366a6e0b375SMatthew G. Knepley   Output Parameter:
8367a6e0b375SMatthew G. Knepley . localX - The output vector
8368a6e0b375SMatthew G. Knepley 
836920f4b53cSBarry Smith   Calling sequence of `funcs`:
8370a6e0b375SMatthew G. Knepley + dim          - The spatial dimension
8371a6e0b375SMatthew G. Knepley . Nf           - The number of input fields
8372a6e0b375SMatthew G. Knepley . NfAux        - The number of input auxiliary fields
8373a6e0b375SMatthew G. Knepley . uOff         - The offset of each field in u[]
8374a6e0b375SMatthew G. Knepley . uOff_x       - The offset of each field in u_x[]
8375a6e0b375SMatthew G. Knepley . u            - The field values at this point in space
8376a6e0b375SMatthew G. Knepley . u_t          - The field time derivative at this point in space (or NULL)
8377a6e0b375SMatthew G. Knepley . u_x          - The field derivatives at this point in space
8378a6e0b375SMatthew G. Knepley . aOff         - The offset of each auxiliary field in u[]
8379a6e0b375SMatthew G. Knepley . aOff_x       - The offset of each auxiliary field in u_x[]
8380a6e0b375SMatthew G. Knepley . a            - The auxiliary field values at this point in space
8381a6e0b375SMatthew G. Knepley . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8382a6e0b375SMatthew G. Knepley . a_x          - The auxiliary field derivatives at this point in space
8383a6e0b375SMatthew G. Knepley . t            - The current time
8384a6e0b375SMatthew G. Knepley . x            - The coordinates of this point
8385a6e0b375SMatthew G. Knepley . numConstants - The number of constants
8386a6e0b375SMatthew G. Knepley . constants    - The value of each constant
8387a6e0b375SMatthew G. Knepley - f            - The value of the function at this point in space
8388a6e0b375SMatthew G. Knepley 
838973ff1848SBarry Smith   Level: intermediate
839073ff1848SBarry Smith 
8391bb7acecfSBarry Smith   Note:
8392bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8393bb7acecfSBarry Smith   The input `DM`, attached to localU, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8394bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8395a6e0b375SMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8396a6e0b375SMatthew G. Knepley 
8397bb7acecfSBarry Smith   Developer Notes:
8398bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8399bb7acecfSBarry Smith 
8400bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8401bb7acecfSBarry Smith 
84021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabel()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8403a6e0b375SMatthew G. Knepley @*/
8404a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX)
8405d71ae5a4SJacob Faibussowitsch {
84068c6c5593SMatthew G. Knepley   PetscFunctionBegin;
84078c6c5593SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8408064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localU, VEC_CLASSID, 8);
8409064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
8410fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX);
84113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
84128c6c5593SMatthew G. Knepley }
84138c6c5593SMatthew G. Knepley 
84142716604bSToby Isaac /*@C
8415d29d7c6eSMatthew G. Knepley   DMProjectFieldLabel - This projects the given function of the input fields into the function space provided, putting the coefficients in a global vector, calculating only over the portion of the domain specified by the label.
8416d29d7c6eSMatthew G. Knepley 
841720f4b53cSBarry Smith   Not Collective
8418d29d7c6eSMatthew G. Knepley 
8419d29d7c6eSMatthew G. Knepley   Input Parameters:
8420bb7acecfSBarry Smith + dm     - The `DM`
8421d29d7c6eSMatthew G. Knepley . time   - The time
8422bb7acecfSBarry Smith . label  - The `DMLabel` marking the portion of the domain to output
8423d29d7c6eSMatthew G. Knepley . numIds - The number of label ids to use
8424d29d7c6eSMatthew G. Knepley . ids    - The label ids to use for marking
8425bb7acecfSBarry Smith . Nc     - The number of components to set in the output, or `PETSC_DETERMINE` for all components
842620f4b53cSBarry Smith . comps  - The components to set in the output, or `NULL` for all components
8427d29d7c6eSMatthew G. Knepley . U      - The input field vector
8428d29d7c6eSMatthew G. Knepley . funcs  - The functions to evaluate, one per field
8429d29d7c6eSMatthew G. Knepley - mode   - The insertion mode for values
8430d29d7c6eSMatthew G. Knepley 
8431d29d7c6eSMatthew G. Knepley   Output Parameter:
8432d29d7c6eSMatthew G. Knepley . X - The output vector
8433d29d7c6eSMatthew G. Knepley 
843420f4b53cSBarry Smith   Calling sequence of `funcs`:
8435d29d7c6eSMatthew G. Knepley + dim          - The spatial dimension
8436d29d7c6eSMatthew G. Knepley . Nf           - The number of input fields
8437d29d7c6eSMatthew G. Knepley . NfAux        - The number of input auxiliary fields
8438d29d7c6eSMatthew G. Knepley . uOff         - The offset of each field in u[]
8439d29d7c6eSMatthew G. Knepley . uOff_x       - The offset of each field in u_x[]
8440d29d7c6eSMatthew G. Knepley . u            - The field values at this point in space
8441d29d7c6eSMatthew G. Knepley . u_t          - The field time derivative at this point in space (or NULL)
8442d29d7c6eSMatthew G. Knepley . u_x          - The field derivatives at this point in space
8443d29d7c6eSMatthew G. Knepley . aOff         - The offset of each auxiliary field in u[]
8444d29d7c6eSMatthew G. Knepley . aOff_x       - The offset of each auxiliary field in u_x[]
8445d29d7c6eSMatthew G. Knepley . a            - The auxiliary field values at this point in space
8446d29d7c6eSMatthew G. Knepley . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8447d29d7c6eSMatthew G. Knepley . a_x          - The auxiliary field derivatives at this point in space
8448d29d7c6eSMatthew G. Knepley . t            - The current time
8449d29d7c6eSMatthew G. Knepley . x            - The coordinates of this point
8450d29d7c6eSMatthew G. Knepley . numConstants - The number of constants
8451d29d7c6eSMatthew G. Knepley . constants    - The value of each constant
8452d29d7c6eSMatthew G. Knepley - f            - The value of the function at this point in space
8453d29d7c6eSMatthew G. Knepley 
845473ff1848SBarry Smith   Level: intermediate
845573ff1848SBarry Smith 
8456bb7acecfSBarry Smith   Note:
8457bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8458bb7acecfSBarry Smith   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8459bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8460d29d7c6eSMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8461d29d7c6eSMatthew G. Knepley 
8462bb7acecfSBarry Smith   Developer Notes:
8463bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8464bb7acecfSBarry Smith 
8465bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8466bb7acecfSBarry Smith 
84671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8468d29d7c6eSMatthew G. Knepley @*/
8469a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec U, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec X)
8470d71ae5a4SJacob Faibussowitsch {
8471d29d7c6eSMatthew G. Knepley   DM  dmIn;
8472d29d7c6eSMatthew G. Knepley   Vec localU, localX;
8473d29d7c6eSMatthew G. Knepley 
8474d29d7c6eSMatthew G. Knepley   PetscFunctionBegin;
8475d29d7c6eSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8476d29d7c6eSMatthew G. Knepley   PetscCall(VecGetDM(U, &dmIn));
8477d29d7c6eSMatthew G. Knepley   PetscCall(DMGetLocalVector(dmIn, &localU));
8478d29d7c6eSMatthew G. Knepley   PetscCall(DMGetLocalVector(dm, &localX));
8479f60fa741SMatthew G. Knepley   PetscCall(VecSet(localX, 0.));
848072fc1ce5SMatthew G. Knepley   PetscCall(DMGlobalToLocalBegin(dmIn, U, mode, localU));
848172fc1ce5SMatthew G. Knepley   PetscCall(DMGlobalToLocalEnd(dmIn, U, mode, localU));
8482d29d7c6eSMatthew G. Knepley   PetscCall(DMProjectFieldLabelLocal(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX));
8483d29d7c6eSMatthew G. Knepley   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
8484d29d7c6eSMatthew G. Knepley   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
8485d29d7c6eSMatthew G. Knepley   PetscCall(DMRestoreLocalVector(dm, &localX));
8486d29d7c6eSMatthew G. Knepley   PetscCall(DMRestoreLocalVector(dmIn, &localU));
84873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8488d29d7c6eSMatthew G. Knepley }
8489d29d7c6eSMatthew G. Knepley 
8490d29d7c6eSMatthew G. Knepley /*@C
8491ece3a9fcSMatthew G. Knepley   DMProjectBdFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain boundary specified by the label.
8492ece3a9fcSMatthew G. Knepley 
849320f4b53cSBarry Smith   Not Collective
8494ece3a9fcSMatthew G. Knepley 
8495ece3a9fcSMatthew G. Knepley   Input Parameters:
8496bb7acecfSBarry Smith + dm     - The `DM`
8497ece3a9fcSMatthew G. Knepley . time   - The time
8498bb7acecfSBarry Smith . label  - The `DMLabel` marking the portion of the domain boundary to output
8499ece3a9fcSMatthew G. Knepley . numIds - The number of label ids to use
8500ece3a9fcSMatthew G. Knepley . ids    - The label ids to use for marking
8501bb7acecfSBarry Smith . Nc     - The number of components to set in the output, or `PETSC_DETERMINE` for all components
850220f4b53cSBarry Smith . comps  - The components to set in the output, or `NULL` for all components
8503ece3a9fcSMatthew G. Knepley . localU - The input field vector
8504ece3a9fcSMatthew G. Knepley . funcs  - The functions to evaluate, one per field
8505ece3a9fcSMatthew G. Knepley - mode   - The insertion mode for values
8506ece3a9fcSMatthew G. Knepley 
8507ece3a9fcSMatthew G. Knepley   Output Parameter:
8508ece3a9fcSMatthew G. Knepley . localX - The output vector
8509ece3a9fcSMatthew G. Knepley 
851020f4b53cSBarry Smith   Calling sequence of `funcs`:
8511ece3a9fcSMatthew G. Knepley + dim          - The spatial dimension
8512ece3a9fcSMatthew G. Knepley . Nf           - The number of input fields
8513ece3a9fcSMatthew G. Knepley . NfAux        - The number of input auxiliary fields
8514ece3a9fcSMatthew G. Knepley . uOff         - The offset of each field in u[]
8515ece3a9fcSMatthew G. Knepley . uOff_x       - The offset of each field in u_x[]
8516ece3a9fcSMatthew G. Knepley . u            - The field values at this point in space
8517ece3a9fcSMatthew G. Knepley . u_t          - The field time derivative at this point in space (or NULL)
8518ece3a9fcSMatthew G. Knepley . u_x          - The field derivatives at this point in space
8519ece3a9fcSMatthew G. Knepley . aOff         - The offset of each auxiliary field in u[]
8520ece3a9fcSMatthew G. Knepley . aOff_x       - The offset of each auxiliary field in u_x[]
8521ece3a9fcSMatthew G. Knepley . a            - The auxiliary field values at this point in space
8522ece3a9fcSMatthew G. Knepley . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8523ece3a9fcSMatthew G. Knepley . a_x          - The auxiliary field derivatives at this point in space
8524ece3a9fcSMatthew G. Knepley . t            - The current time
8525ece3a9fcSMatthew G. Knepley . x            - The coordinates of this point
8526ece3a9fcSMatthew G. Knepley . n            - The face normal
8527ece3a9fcSMatthew G. Knepley . numConstants - The number of constants
8528ece3a9fcSMatthew G. Knepley . constants    - The value of each constant
8529ece3a9fcSMatthew G. Knepley - f            - The value of the function at this point in space
8530ece3a9fcSMatthew G. Knepley 
853173ff1848SBarry Smith   Level: intermediate
853273ff1848SBarry Smith 
8533ece3a9fcSMatthew G. Knepley   Note:
8534bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8535bb7acecfSBarry Smith   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8536bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8537ece3a9fcSMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8538ece3a9fcSMatthew G. Knepley 
8539bb7acecfSBarry Smith   Developer Notes:
8540bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8541bb7acecfSBarry Smith 
8542bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8543bb7acecfSBarry Smith 
85441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8545ece3a9fcSMatthew G. Knepley @*/
8546a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectBdFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX)
8547d71ae5a4SJacob Faibussowitsch {
8548ece3a9fcSMatthew G. Knepley   PetscFunctionBegin;
8549ece3a9fcSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8550064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localU, VEC_CLASSID, 8);
8551064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
8552fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectbdfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX);
85533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8554ece3a9fcSMatthew G. Knepley }
8555ece3a9fcSMatthew G. Knepley 
8556ece3a9fcSMatthew G. Knepley /*@C
85572716604bSToby Isaac   DMComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h.
85582716604bSToby Isaac 
855920f4b53cSBarry Smith   Collective
8560bb7acecfSBarry Smith 
85612716604bSToby Isaac   Input Parameters:
8562bb7acecfSBarry Smith + dm    - The `DM`
85630709b2feSToby Isaac . time  - The time
85642716604bSToby Isaac . funcs - The functions to evaluate for each field component
85652716604bSToby Isaac . ctxs  - Optional array of contexts to pass to each function, or NULL.
8566574a98acSMatthew G. Knepley - X     - The coefficient vector u_h, a global vector
85672716604bSToby Isaac 
85682716604bSToby Isaac   Output Parameter:
85692716604bSToby Isaac . diff - The diff ||u - u_h||_2
85702716604bSToby Isaac 
85712716604bSToby Isaac   Level: developer
85722716604bSToby Isaac 
8573bb7acecfSBarry Smith   Developer Notes:
8574bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8575bb7acecfSBarry Smith 
8576bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8577bb7acecfSBarry Smith 
85781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
85792716604bSToby Isaac @*/
8580d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
8581d71ae5a4SJacob Faibussowitsch {
85822716604bSToby Isaac   PetscFunctionBegin;
85832716604bSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8584b698f381SToby Isaac   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
8585fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, computel2diff, time, funcs, ctxs, X, diff);
85863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
85872716604bSToby Isaac }
8588b698f381SToby Isaac 
8589b698f381SToby Isaac /*@C
8590b698f381SToby Isaac   DMComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h.
8591b698f381SToby Isaac 
859220f4b53cSBarry Smith   Collective
8593d083f849SBarry Smith 
8594b698f381SToby Isaac   Input Parameters:
8595bb7acecfSBarry Smith + dm    - The `DM`
8596a4e35b19SJacob Faibussowitsch . time  - The time
8597b698f381SToby Isaac . funcs - The gradient functions to evaluate for each field component
8598b698f381SToby Isaac . ctxs  - Optional array of contexts to pass to each function, or NULL.
8599574a98acSMatthew G. Knepley . X     - The coefficient vector u_h, a global vector
8600b698f381SToby Isaac - n     - The vector to project along
8601b698f381SToby Isaac 
8602b698f381SToby Isaac   Output Parameter:
8603b698f381SToby Isaac . diff - The diff ||(grad u - grad u_h) . n||_2
8604b698f381SToby Isaac 
8605b698f381SToby Isaac   Level: developer
8606b698f381SToby Isaac 
8607bb7acecfSBarry Smith   Developer Notes:
8608bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8609bb7acecfSBarry Smith 
8610bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8611bb7acecfSBarry Smith 
86121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMComputeL2FieldDiff()`
8613b698f381SToby Isaac @*/
8614d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff)
8615d71ae5a4SJacob Faibussowitsch {
8616b698f381SToby Isaac   PetscFunctionBegin;
8617b698f381SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8618b698f381SToby Isaac   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
8619fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, computel2gradientdiff, time, funcs, ctxs, X, n, diff);
86203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8621b698f381SToby Isaac }
8622b698f381SToby Isaac 
86232a16baeaSToby Isaac /*@C
86242a16baeaSToby Isaac   DMComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components.
86252a16baeaSToby Isaac 
862620f4b53cSBarry Smith   Collective
8627d083f849SBarry Smith 
86282a16baeaSToby Isaac   Input Parameters:
8629bb7acecfSBarry Smith + dm    - The `DM`
86302a16baeaSToby Isaac . time  - The time
86312a16baeaSToby Isaac . funcs - The functions to evaluate for each field component
86322a16baeaSToby Isaac . ctxs  - Optional array of contexts to pass to each function, or NULL.
8633574a98acSMatthew G. Knepley - X     - The coefficient vector u_h, a global vector
86342a16baeaSToby Isaac 
86352a16baeaSToby Isaac   Output Parameter:
86362a16baeaSToby Isaac . diff - The array of differences, ||u^f - u^f_h||_2
86372a16baeaSToby Isaac 
86382a16baeaSToby Isaac   Level: developer
86392a16baeaSToby Isaac 
8640bb7acecfSBarry Smith   Developer Notes:
8641bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8642bb7acecfSBarry Smith 
8643bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8644bb7acecfSBarry Smith 
864542747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2GradientDiff()`
86462a16baeaSToby Isaac @*/
8647d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[])
8648d71ae5a4SJacob Faibussowitsch {
86492a16baeaSToby Isaac   PetscFunctionBegin;
86502a16baeaSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
86512a16baeaSToby Isaac   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
8652fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, computel2fielddiff, time, funcs, ctxs, X, diff);
86533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
86542a16baeaSToby Isaac }
86552a16baeaSToby Isaac 
8656df0b854cSToby Isaac /*@C
8657bb7acecfSBarry Smith   DMGetNeighbors - Gets an array containing the MPI ranks of all the processes neighbors
8658502a2867SDave May 
8659502a2867SDave May   Not Collective
8660502a2867SDave May 
8661502a2867SDave May   Input Parameter:
8662bb7acecfSBarry Smith . dm - The `DM`
8663502a2867SDave May 
86640a19bb7dSprj-   Output Parameters:
86650a19bb7dSprj- + nranks - the number of neighbours
86660a19bb7dSprj- - ranks  - the neighbors ranks
8667502a2867SDave May 
86689bdbcad8SBarry Smith   Level: beginner
86699bdbcad8SBarry Smith 
8670bb7acecfSBarry Smith   Note:
8671bb7acecfSBarry Smith   Do not free the array, it is freed when the `DM` is destroyed.
8672502a2867SDave May 
86731cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDAGetNeighbors()`, `PetscSFGetRootRanks()`
8674502a2867SDave May @*/
8675d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNeighbors(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[])
8676d71ae5a4SJacob Faibussowitsch {
8677502a2867SDave May   PetscFunctionBegin;
8678502a2867SDave May   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8679fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, getneighbors, nranks, ranks);
86803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8681502a2867SDave May }
8682502a2867SDave May 
8683531c7667SBarry Smith #include <petsc/private/matimpl.h> /* Needed because of coloring->ctype below */
8684531c7667SBarry Smith 
8685531c7667SBarry Smith /*
8686531c7667SBarry Smith     Converts the input vector to a ghosted vector and then calls the standard coloring code.
86872b6f951bSStefano Zampini     This must be a different function because it requires DM which is not defined in the Mat library
8688531c7667SBarry Smith */
868966976f2fSJacob Faibussowitsch static PetscErrorCode MatFDColoringApply_AIJDM(Mat J, MatFDColoring coloring, Vec x1, void *sctx)
8690d71ae5a4SJacob Faibussowitsch {
8691531c7667SBarry Smith   PetscFunctionBegin;
8692531c7667SBarry Smith   if (coloring->ctype == IS_COLORING_LOCAL) {
8693531c7667SBarry Smith     Vec x1local;
8694531c7667SBarry Smith     DM  dm;
86959566063dSJacob Faibussowitsch     PetscCall(MatGetDM(J, &dm));
86967a8be351SBarry Smith     PetscCheck(dm, PetscObjectComm((PetscObject)J), PETSC_ERR_ARG_INCOMP, "IS_COLORING_LOCAL requires a DM");
86979566063dSJacob Faibussowitsch     PetscCall(DMGetLocalVector(dm, &x1local));
86989566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalBegin(dm, x1, INSERT_VALUES, x1local));
86999566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalEnd(dm, x1, INSERT_VALUES, x1local));
8700531c7667SBarry Smith     x1 = x1local;
8701531c7667SBarry Smith   }
87029566063dSJacob Faibussowitsch   PetscCall(MatFDColoringApply_AIJ(J, coloring, x1, sctx));
8703531c7667SBarry Smith   if (coloring->ctype == IS_COLORING_LOCAL) {
8704531c7667SBarry Smith     DM dm;
87059566063dSJacob Faibussowitsch     PetscCall(MatGetDM(J, &dm));
87069566063dSJacob Faibussowitsch     PetscCall(DMRestoreLocalVector(dm, &x1));
8707531c7667SBarry Smith   }
87083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8709531c7667SBarry Smith }
8710531c7667SBarry Smith 
8711531c7667SBarry Smith /*@
8712bb7acecfSBarry Smith   MatFDColoringUseDM - allows a `MatFDColoring` object to use the `DM` associated with the matrix to compute a `IS_COLORING_LOCAL` coloring
8713531c7667SBarry Smith 
8714a4e35b19SJacob Faibussowitsch   Input Parameters:
8715a4e35b19SJacob Faibussowitsch + coloring   - The matrix to get the `DM` from
8716a4e35b19SJacob Faibussowitsch - fdcoloring - the `MatFDColoring` object
8717531c7667SBarry Smith 
87189bdbcad8SBarry Smith   Level: advanced
87199bdbcad8SBarry Smith 
872073ff1848SBarry Smith   Developer Note:
872173ff1848SBarry Smith   This routine exists because the PETSc `Mat` library does not know about the `DM` objects
8722531c7667SBarry Smith 
87231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatFDColoring`, `MatFDColoringCreate()`, `ISColoringType`
8724531c7667SBarry Smith @*/
8725d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringUseDM(Mat coloring, MatFDColoring fdcoloring)
8726d71ae5a4SJacob Faibussowitsch {
8727531c7667SBarry Smith   PetscFunctionBegin;
8728531c7667SBarry Smith   coloring->ops->fdcoloringapply = MatFDColoringApply_AIJDM;
87293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8730531c7667SBarry Smith }
87318320bc6fSPatrick Sanan 
87328320bc6fSPatrick Sanan /*@
8733bb7acecfSBarry Smith   DMGetCompatibility - determine if two `DM`s are compatible
87348320bc6fSPatrick Sanan 
87358320bc6fSPatrick Sanan   Collective
87368320bc6fSPatrick Sanan 
87378320bc6fSPatrick Sanan   Input Parameters:
8738bb7acecfSBarry Smith + dm1 - the first `DM`
8739bb7acecfSBarry Smith - dm2 - the second `DM`
87408320bc6fSPatrick Sanan 
87418320bc6fSPatrick Sanan   Output Parameters:
8742bb7acecfSBarry Smith + compatible - whether or not the two `DM`s are compatible
8743bb7acecfSBarry Smith - set        - whether or not the compatible value was actually determined and set
87448320bc6fSPatrick Sanan 
874520f4b53cSBarry Smith   Level: advanced
874620f4b53cSBarry Smith 
87478320bc6fSPatrick Sanan   Notes:
8748bb7acecfSBarry Smith   Two `DM`s are deemed compatible if they represent the same parallel decomposition
87493d862458SPatrick Sanan   of the same topology. This implies that the section (field data) on one
87508320bc6fSPatrick Sanan   "makes sense" with respect to the topology and parallel decomposition of the other.
8751bb7acecfSBarry Smith   Loosely speaking, compatible `DM`s represent the same domain and parallel
87523d862458SPatrick Sanan   decomposition, but hold different data.
87538320bc6fSPatrick Sanan 
87548320bc6fSPatrick Sanan   Typically, one would confirm compatibility if intending to simultaneously iterate
8755bb7acecfSBarry Smith   over a pair of vectors obtained from different `DM`s.
87568320bc6fSPatrick Sanan 
8757bb7acecfSBarry Smith   For example, two `DMDA` objects are compatible if they have the same local
87588320bc6fSPatrick Sanan   and global sizes and the same stencil width. They can have different numbers
87598320bc6fSPatrick Sanan   of degrees of freedom per node. Thus, one could use the node numbering from
8760bb7acecfSBarry Smith   either `DM` in bounds for a loop over vectors derived from either `DM`.
87618320bc6fSPatrick Sanan 
8762bb7acecfSBarry Smith   Consider the operation of summing data living on a 2-dof `DMDA` to data living
8763bb7acecfSBarry Smith   on a 1-dof `DMDA`, which should be compatible, as in the following snippet.
87648320bc6fSPatrick Sanan .vb
87658320bc6fSPatrick Sanan   ...
87669566063dSJacob Faibussowitsch   PetscCall(DMGetCompatibility(da1,da2,&compatible,&set));
87678320bc6fSPatrick Sanan   if (set && compatible)  {
87689566063dSJacob Faibussowitsch     PetscCall(DMDAVecGetArrayDOF(da1,vec1,&arr1));
87699566063dSJacob Faibussowitsch     PetscCall(DMDAVecGetArrayDOF(da2,vec2,&arr2));
87709566063dSJacob Faibussowitsch     PetscCall(DMDAGetCorners(da1,&x,&y,NULL,&m,&n,NULL));
87718320bc6fSPatrick Sanan     for (j=y; j<y+n; ++j) {
87728320bc6fSPatrick Sanan       for (i=x; i<x+m, ++i) {
87738320bc6fSPatrick Sanan         arr1[j][i][0] = arr2[j][i][0] + arr2[j][i][1];
87748320bc6fSPatrick Sanan       }
87758320bc6fSPatrick Sanan     }
87769566063dSJacob Faibussowitsch     PetscCall(DMDAVecRestoreArrayDOF(da1,vec1,&arr1));
87779566063dSJacob Faibussowitsch     PetscCall(DMDAVecRestoreArrayDOF(da2,vec2,&arr2));
87788320bc6fSPatrick Sanan   } else {
87798320bc6fSPatrick Sanan     SETERRQ(PetscObjectComm((PetscObject)da1,PETSC_ERR_ARG_INCOMP,"DMDA objects incompatible");
87808320bc6fSPatrick Sanan   }
87818320bc6fSPatrick Sanan   ...
87828320bc6fSPatrick Sanan .ve
87838320bc6fSPatrick Sanan 
8784bb7acecfSBarry Smith   Checking compatibility might be expensive for a given implementation of `DM`,
87858320bc6fSPatrick Sanan   or might be impossible to unambiguously confirm or deny. For this reason,
87868320bc6fSPatrick Sanan   this function may decline to determine compatibility, and hence users should
87878320bc6fSPatrick Sanan   always check the "set" output parameter.
87888320bc6fSPatrick Sanan 
8789bb7acecfSBarry Smith   A `DM` is always compatible with itself.
87908320bc6fSPatrick Sanan 
8791bb7acecfSBarry Smith   In the current implementation, `DM`s which live on "unequal" communicators
87928320bc6fSPatrick Sanan   (MPI_UNEQUAL in the terminology of MPI_Comm_compare()) are always deemed
87938320bc6fSPatrick Sanan   incompatible.
87948320bc6fSPatrick Sanan 
87958320bc6fSPatrick Sanan   This function is labeled "Collective," as information about all subdomains
8796bb7acecfSBarry Smith   is required on each rank. However, in `DM` implementations which store all this
87978320bc6fSPatrick Sanan   information locally, this function may be merely "Logically Collective".
87988320bc6fSPatrick Sanan 
879973ff1848SBarry Smith   Developer Note:
8800bb7acecfSBarry Smith   Compatibility is assumed to be a symmetric concept; `DM` A is compatible with `DM` B
88013d862458SPatrick Sanan   iff B is compatible with A. Thus, this function checks the implementations
8802a5bc1bf3SBarry Smith   of both dm and dmc (if they are of different types), attempting to determine
8803bb7acecfSBarry Smith   compatibility. It is left to `DM` implementers to ensure that symmetry is
88048320bc6fSPatrick Sanan   preserved. The simplest way to do this is, when implementing type-specific
88053d862458SPatrick Sanan   logic for this function, is to check for existing logic in the implementation
8806bb7acecfSBarry Smith   of other `DM` types and let *set = PETSC_FALSE if found.
88078320bc6fSPatrick Sanan 
88081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreateCompatibleDMDA()`, `DMStagCreateCompatibleDMStag()`
88098320bc6fSPatrick Sanan @*/
8810d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCompatibility(DM dm1, DM dm2, PetscBool *compatible, PetscBool *set)
8811d71ae5a4SJacob Faibussowitsch {
88128320bc6fSPatrick Sanan   PetscMPIInt compareResult;
88138320bc6fSPatrick Sanan   DMType      type, type2;
88148320bc6fSPatrick Sanan   PetscBool   sameType;
88158320bc6fSPatrick Sanan 
88168320bc6fSPatrick Sanan   PetscFunctionBegin;
8817a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dm1, DM_CLASSID, 1);
88188320bc6fSPatrick Sanan   PetscValidHeaderSpecific(dm2, DM_CLASSID, 2);
88198320bc6fSPatrick Sanan 
88208320bc6fSPatrick Sanan   /* Declare a DM compatible with itself */
8821a5bc1bf3SBarry Smith   if (dm1 == dm2) {
88228320bc6fSPatrick Sanan     *set        = PETSC_TRUE;
88238320bc6fSPatrick Sanan     *compatible = PETSC_TRUE;
88243ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
88258320bc6fSPatrick Sanan   }
88268320bc6fSPatrick Sanan 
88278320bc6fSPatrick Sanan   /* Declare a DM incompatible with a DM that lives on an "unequal"
88288320bc6fSPatrick Sanan      communicator. Note that this does not preclude compatibility with
88298320bc6fSPatrick Sanan      DMs living on "congruent" or "similar" communicators, but this must be
88308320bc6fSPatrick Sanan      determined by the implementation-specific logic */
88319566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)dm1), PetscObjectComm((PetscObject)dm2), &compareResult));
88328320bc6fSPatrick Sanan   if (compareResult == MPI_UNEQUAL) {
88338320bc6fSPatrick Sanan     *set        = PETSC_TRUE;
88348320bc6fSPatrick Sanan     *compatible = PETSC_FALSE;
88353ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
88368320bc6fSPatrick Sanan   }
88378320bc6fSPatrick Sanan 
88388320bc6fSPatrick Sanan   /* Pass to the implementation-specific routine, if one exists. */
8839a5bc1bf3SBarry Smith   if (dm1->ops->getcompatibility) {
8840dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm1, getcompatibility, dm2, compatible, set);
88413ba16761SJacob Faibussowitsch     if (*set) PetscFunctionReturn(PETSC_SUCCESS);
88428320bc6fSPatrick Sanan   }
88438320bc6fSPatrick Sanan 
8844a5bc1bf3SBarry Smith   /* If dm1 and dm2 are of different types, then attempt to check compatibility
88458320bc6fSPatrick Sanan      with an implementation of this function from dm2 */
88469566063dSJacob Faibussowitsch   PetscCall(DMGetType(dm1, &type));
88479566063dSJacob Faibussowitsch   PetscCall(DMGetType(dm2, &type2));
88489566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(type, type2, &sameType));
88498320bc6fSPatrick Sanan   if (!sameType && dm2->ops->getcompatibility) {
8850dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm2, getcompatibility, dm1, compatible, set); /* Note argument order */
88518320bc6fSPatrick Sanan   } else {
88528320bc6fSPatrick Sanan     *set = PETSC_FALSE;
88538320bc6fSPatrick Sanan   }
88543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
88558320bc6fSPatrick Sanan }
8856c0f0dcc3SMatthew G. Knepley 
8857c0f0dcc3SMatthew G. Knepley /*@C
8858bb7acecfSBarry Smith   DMMonitorSet - Sets an additional monitor function that is to be used after a solve to monitor discretization performance.
8859c0f0dcc3SMatthew G. Knepley 
886020f4b53cSBarry Smith   Logically Collective
8861c0f0dcc3SMatthew G. Knepley 
8862c0f0dcc3SMatthew G. Knepley   Input Parameters:
886360225df5SJacob Faibussowitsch + dm             - the `DM`
8864c0f0dcc3SMatthew G. Knepley . f              - the monitor function
886520f4b53cSBarry Smith . mctx           - [optional] user-defined context for private data for the monitor routine (use `NULL` if no context is desired)
886620f4b53cSBarry Smith - monitordestroy - [optional] routine that frees monitor context (may be `NULL`)
8867c0f0dcc3SMatthew G. Knepley 
886820f4b53cSBarry Smith   Options Database Key:
886960225df5SJacob Faibussowitsch . -dm_monitor_cancel - cancels all monitors that have been hardwired into a code by calls to `DMMonitorSet()`, but
8870c0f0dcc3SMatthew G. Knepley                             does not cancel those set via the options database.
8871c0f0dcc3SMatthew G. Knepley 
88729bdbcad8SBarry Smith   Level: intermediate
88739bdbcad8SBarry Smith 
8874bb7acecfSBarry Smith   Note:
8875c0f0dcc3SMatthew G. Knepley   Several different monitoring routines may be set by calling
8876bb7acecfSBarry Smith   `DMMonitorSet()` multiple times or with `DMMonitorSetFromOptions()`; all will be called in the
8877c0f0dcc3SMatthew G. Knepley   order in which they were set.
8878c0f0dcc3SMatthew G. Knepley 
887973ff1848SBarry Smith   Fortran Note:
8880bb7acecfSBarry Smith   Only a single monitor function can be set for each `DM` object
8881bb7acecfSBarry Smith 
888273ff1848SBarry Smith   Developer Note:
8883bb7acecfSBarry Smith   This API has a generic name but seems specific to a very particular aspect of the use of `DM`
8884c0f0dcc3SMatthew G. Knepley 
88851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorCancel()`, `DMMonitorSetFromOptions()`, `DMMonitor()`
8886c0f0dcc3SMatthew G. Knepley @*/
8887d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSet(DM dm, PetscErrorCode (*f)(DM, void *), void *mctx, PetscErrorCode (*monitordestroy)(void **))
8888d71ae5a4SJacob Faibussowitsch {
8889c0f0dcc3SMatthew G. Knepley   PetscInt m;
8890c0f0dcc3SMatthew G. Knepley 
8891c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
8892c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8893c0f0dcc3SMatthew G. Knepley   for (m = 0; m < dm->numbermonitors; ++m) {
8894c0f0dcc3SMatthew G. Knepley     PetscBool identical;
8895c0f0dcc3SMatthew G. Knepley 
88969566063dSJacob Faibussowitsch     PetscCall(PetscMonitorCompare((PetscErrorCode(*)(void))f, mctx, monitordestroy, (PetscErrorCode(*)(void))dm->monitor[m], dm->monitorcontext[m], dm->monitordestroy[m], &identical));
88973ba16761SJacob Faibussowitsch     if (identical) PetscFunctionReturn(PETSC_SUCCESS);
8898c0f0dcc3SMatthew G. Knepley   }
88997a8be351SBarry Smith   PetscCheck(dm->numbermonitors < MAXDMMONITORS, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many monitors set");
8900c0f0dcc3SMatthew G. Knepley   dm->monitor[dm->numbermonitors]          = f;
8901c0f0dcc3SMatthew G. Knepley   dm->monitordestroy[dm->numbermonitors]   = monitordestroy;
8902c0f0dcc3SMatthew G. Knepley   dm->monitorcontext[dm->numbermonitors++] = (void *)mctx;
89033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8904c0f0dcc3SMatthew G. Knepley }
8905c0f0dcc3SMatthew G. Knepley 
8906c0f0dcc3SMatthew G. Knepley /*@
8907bb7acecfSBarry Smith   DMMonitorCancel - Clears all the monitor functions for a `DM` object.
8908c0f0dcc3SMatthew G. Knepley 
890920f4b53cSBarry Smith   Logically Collective
8910c0f0dcc3SMatthew G. Knepley 
8911c0f0dcc3SMatthew G. Knepley   Input Parameter:
8912c0f0dcc3SMatthew G. Knepley . dm - the DM
8913c0f0dcc3SMatthew G. Knepley 
8914c0f0dcc3SMatthew G. Knepley   Options Database Key:
8915c0f0dcc3SMatthew G. Knepley . -dm_monitor_cancel - cancels all monitors that have been hardwired
8916bb7acecfSBarry Smith   into a code by calls to `DMonitorSet()`, but does not cancel those
8917c0f0dcc3SMatthew G. Knepley   set via the options database
8918c0f0dcc3SMatthew G. Knepley 
89199bdbcad8SBarry Smith   Level: intermediate
89209bdbcad8SBarry Smith 
8921bb7acecfSBarry Smith   Note:
8922bb7acecfSBarry Smith   There is no way to clear one specific monitor from a `DM` object.
8923c0f0dcc3SMatthew G. Knepley 
89241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`, `DMMonitor()`
8925c0f0dcc3SMatthew G. Knepley @*/
8926d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorCancel(DM dm)
8927d71ae5a4SJacob Faibussowitsch {
8928c0f0dcc3SMatthew G. Knepley   PetscInt m;
8929c0f0dcc3SMatthew G. Knepley 
8930c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
8931c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8932c0f0dcc3SMatthew G. Knepley   for (m = 0; m < dm->numbermonitors; ++m) {
89339566063dSJacob Faibussowitsch     if (dm->monitordestroy[m]) PetscCall((*dm->monitordestroy[m])(&dm->monitorcontext[m]));
8934c0f0dcc3SMatthew G. Knepley   }
8935c0f0dcc3SMatthew G. Knepley   dm->numbermonitors = 0;
89363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8937c0f0dcc3SMatthew G. Knepley }
8938c0f0dcc3SMatthew G. Knepley 
8939c0f0dcc3SMatthew G. Knepley /*@C
8940c0f0dcc3SMatthew G. Knepley   DMMonitorSetFromOptions - Sets a monitor function and viewer appropriate for the type indicated by the user
8941c0f0dcc3SMatthew G. Knepley 
894220f4b53cSBarry Smith   Collective
8943c0f0dcc3SMatthew G. Knepley 
8944c0f0dcc3SMatthew G. Knepley   Input Parameters:
8945bb7acecfSBarry Smith + dm           - `DM` object you wish to monitor
8946c0f0dcc3SMatthew G. Knepley . name         - the monitor type one is seeking
8947c0f0dcc3SMatthew G. Knepley . help         - message indicating what monitoring is done
8948c0f0dcc3SMatthew G. Knepley . manual       - manual page for the monitor
8949c0f0dcc3SMatthew G. Knepley . monitor      - the monitor function
8950bb7acecfSBarry Smith - monitorsetup - a function that is called once ONLY if the user selected this monitor that may set additional features of the `DM` or `PetscViewer` objects
8951c0f0dcc3SMatthew G. Knepley 
8952c0f0dcc3SMatthew G. Knepley   Output Parameter:
8953c0f0dcc3SMatthew G. Knepley . flg - Flag set if the monitor was created
8954c0f0dcc3SMatthew G. Knepley 
8955c0f0dcc3SMatthew G. Knepley   Level: developer
8956c0f0dcc3SMatthew G. Knepley 
8957648c30bcSBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscOptionsCreateViewer()`, `PetscOptionsGetReal()`, `PetscOptionsHasName()`, `PetscOptionsGetString()`,
8958db781477SPatrick Sanan           `PetscOptionsGetIntArray()`, `PetscOptionsGetRealArray()`, `PetscOptionsBool()`
895960225df5SJacob Faibussowitsch           `PetscOptionsInt()`, `PetscOptionsString()`, `PetscOptionsReal()`,
8960db781477SPatrick Sanan           `PetscOptionsName()`, `PetscOptionsBegin()`, `PetscOptionsEnd()`, `PetscOptionsHeadBegin()`,
8961c2e3fba1SPatrick Sanan           `PetscOptionsStringArray()`, `PetscOptionsRealArray()`, `PetscOptionsScalar()`,
8962db781477SPatrick Sanan           `PetscOptionsBoolGroupBegin()`, `PetscOptionsBoolGroup()`, `PetscOptionsBoolGroupEnd()`,
8963bb7acecfSBarry Smith           `PetscOptionsFList()`, `PetscOptionsEList()`, `DMMonitor()`, `DMMonitorSet()`
8964c0f0dcc3SMatthew G. Knepley @*/
8965d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSetFromOptions(DM dm, const char name[], const char help[], const char manual[], PetscErrorCode (*monitor)(DM, void *), PetscErrorCode (*monitorsetup)(DM, PetscViewerAndFormat *), PetscBool *flg)
8966d71ae5a4SJacob Faibussowitsch {
8967c0f0dcc3SMatthew G. Knepley   PetscViewer       viewer;
8968c0f0dcc3SMatthew G. Knepley   PetscViewerFormat format;
8969c0f0dcc3SMatthew G. Knepley 
8970c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
8971c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8972648c30bcSBarry Smith   PetscCall(PetscOptionsCreateViewer(PetscObjectComm((PetscObject)dm), ((PetscObject)dm)->options, ((PetscObject)dm)->prefix, name, &viewer, &format, flg));
8973c0f0dcc3SMatthew G. Knepley   if (*flg) {
8974c0f0dcc3SMatthew G. Knepley     PetscViewerAndFormat *vf;
8975c0f0dcc3SMatthew G. Knepley 
89769566063dSJacob Faibussowitsch     PetscCall(PetscViewerAndFormatCreate(viewer, format, &vf));
8977648c30bcSBarry Smith     PetscCall(PetscViewerDestroy(&viewer));
89789566063dSJacob Faibussowitsch     if (monitorsetup) PetscCall((*monitorsetup)(dm, vf));
89799566063dSJacob Faibussowitsch     PetscCall(DMMonitorSet(dm, (PetscErrorCode(*)(DM, void *))monitor, vf, (PetscErrorCode(*)(void **))PetscViewerAndFormatDestroy));
8980c0f0dcc3SMatthew G. Knepley   }
89813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8982c0f0dcc3SMatthew G. Knepley }
8983c0f0dcc3SMatthew G. Knepley 
8984c0f0dcc3SMatthew G. Knepley /*@
8985c0f0dcc3SMatthew G. Knepley   DMMonitor - runs the user provided monitor routines, if they exist
8986c0f0dcc3SMatthew G. Knepley 
898720f4b53cSBarry Smith   Collective
8988c0f0dcc3SMatthew G. Knepley 
89892fe279fdSBarry Smith   Input Parameter:
8990bb7acecfSBarry Smith . dm - The `DM`
8991c0f0dcc3SMatthew G. Knepley 
8992c0f0dcc3SMatthew G. Knepley   Level: developer
8993c0f0dcc3SMatthew G. Knepley 
899473ff1848SBarry Smith   Developer Note:
8995a4e35b19SJacob Faibussowitsch   Note should indicate when during the life of the `DM` the monitor is run. It appears to be
8996a4e35b19SJacob Faibussowitsch   related to the discretization process seems rather specialized since some `DM` have no
8997a4e35b19SJacob Faibussowitsch   concept of discretization.
8998bb7acecfSBarry Smith 
89991cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`
9000c0f0dcc3SMatthew G. Knepley @*/
9001d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitor(DM dm)
9002d71ae5a4SJacob Faibussowitsch {
9003c0f0dcc3SMatthew G. Knepley   PetscInt m;
9004c0f0dcc3SMatthew G. Knepley 
9005c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
90063ba16761SJacob Faibussowitsch   if (!dm) PetscFunctionReturn(PETSC_SUCCESS);
9007c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
900848a46eb9SPierre Jolivet   for (m = 0; m < dm->numbermonitors; ++m) PetscCall((*dm->monitor[m])(dm, dm->monitorcontext[m]));
90093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9010c0f0dcc3SMatthew G. Knepley }
90112e4af2aeSMatthew G. Knepley 
90122e4af2aeSMatthew G. Knepley /*@
9013bb7acecfSBarry Smith   DMComputeError - Computes the error assuming the user has provided the exact solution functions
90142e4af2aeSMatthew G. Knepley 
901520f4b53cSBarry Smith   Collective
90162e4af2aeSMatthew G. Knepley 
90172e4af2aeSMatthew G. Knepley   Input Parameters:
9018bb7acecfSBarry Smith + dm  - The `DM`
90196b867d5aSJose E. Roman - sol - The solution vector
90202e4af2aeSMatthew G. Knepley 
90216b867d5aSJose E. Roman   Input/Output Parameter:
902220f4b53cSBarry Smith . errors - An array of length Nf, the number of fields, or `NULL` for no output; on output
90236b867d5aSJose E. Roman            contains the error in each field
90246b867d5aSJose E. Roman 
90256b867d5aSJose E. Roman   Output Parameter:
902620f4b53cSBarry Smith . errorVec - A vector to hold the cellwise error (may be `NULL`)
902720f4b53cSBarry Smith 
902820f4b53cSBarry Smith   Level: developer
90292e4af2aeSMatthew G. Knepley 
9030bb7acecfSBarry Smith   Note:
9031bb7acecfSBarry Smith   The exact solutions come from the `PetscDS` object, and the time comes from `DMGetOutputSequenceNumber()`.
90322e4af2aeSMatthew G. Knepley 
90331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMGetRegionNumDS()`, `PetscDSGetExactSolution()`, `DMGetOutputSequenceNumber()`
90342e4af2aeSMatthew G. Knepley @*/
9035d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeError(DM dm, Vec sol, PetscReal errors[], Vec *errorVec)
9036d71ae5a4SJacob Faibussowitsch {
90372e4af2aeSMatthew G. Knepley   PetscErrorCode (**exactSol)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *);
90382e4af2aeSMatthew G. Knepley   void    **ctxs;
90392e4af2aeSMatthew G. Knepley   PetscReal time;
90402e4af2aeSMatthew G. Knepley   PetscInt  Nf, f, Nds, s;
90412e4af2aeSMatthew G. Knepley 
90422e4af2aeSMatthew G. Knepley   PetscFunctionBegin;
90439566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
90449566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(Nf, &exactSol, Nf, &ctxs));
90459566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
90462e4af2aeSMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
90472e4af2aeSMatthew G. Knepley     PetscDS         ds;
90482e4af2aeSMatthew G. Knepley     DMLabel         label;
90492e4af2aeSMatthew G. Knepley     IS              fieldIS;
90502e4af2aeSMatthew G. Knepley     const PetscInt *fields;
90512e4af2aeSMatthew G. Knepley     PetscInt        dsNf;
90522e4af2aeSMatthew G. Knepley 
905307218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL));
90549566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsNf));
90559566063dSJacob Faibussowitsch     if (fieldIS) PetscCall(ISGetIndices(fieldIS, &fields));
90562e4af2aeSMatthew G. Knepley     for (f = 0; f < dsNf; ++f) {
90572e4af2aeSMatthew G. Knepley       const PetscInt field = fields[f];
90589566063dSJacob Faibussowitsch       PetscCall(PetscDSGetExactSolution(ds, field, &exactSol[field], &ctxs[field]));
90592e4af2aeSMatthew G. Knepley     }
90609566063dSJacob Faibussowitsch     if (fieldIS) PetscCall(ISRestoreIndices(fieldIS, &fields));
90612e4af2aeSMatthew G. Knepley   }
9062ad540459SPierre Jolivet   for (f = 0; f < Nf; ++f) PetscCheck(exactSol[f], PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "DS must contain exact solution functions in order to calculate error, missing for field %" PetscInt_FMT, f);
90639566063dSJacob Faibussowitsch   PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time));
90649566063dSJacob Faibussowitsch   if (errors) PetscCall(DMComputeL2FieldDiff(dm, time, exactSol, ctxs, sol, errors));
90652e4af2aeSMatthew G. Knepley   if (errorVec) {
90662e4af2aeSMatthew G. Knepley     DM             edm;
90672e4af2aeSMatthew G. Knepley     DMPolytopeType ct;
90682e4af2aeSMatthew G. Knepley     PetscBool      simplex;
90692e4af2aeSMatthew G. Knepley     PetscInt       dim, cStart, Nf;
90702e4af2aeSMatthew G. Knepley 
90719566063dSJacob Faibussowitsch     PetscCall(DMClone(dm, &edm));
90729566063dSJacob Faibussowitsch     PetscCall(DMGetDimension(edm, &dim));
90739566063dSJacob Faibussowitsch     PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL));
90749566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCellType(dm, cStart, &ct));
90752e4af2aeSMatthew G. Knepley     simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE;
90769566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
90772e4af2aeSMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
90782e4af2aeSMatthew G. Knepley       PetscFE         fe, efe;
90792e4af2aeSMatthew G. Knepley       PetscQuadrature q;
90802e4af2aeSMatthew G. Knepley       const char     *name;
90812e4af2aeSMatthew G. Knepley 
90829566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe));
90839566063dSJacob Faibussowitsch       PetscCall(PetscFECreateLagrange(PETSC_COMM_SELF, dim, Nf, simplex, 0, PETSC_DETERMINE, &efe));
90849566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetName((PetscObject)fe, &name));
90859566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)efe, name));
90869566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &q));
90879566063dSJacob Faibussowitsch       PetscCall(PetscFESetQuadrature(efe, q));
90889566063dSJacob Faibussowitsch       PetscCall(DMSetField(edm, f, NULL, (PetscObject)efe));
90899566063dSJacob Faibussowitsch       PetscCall(PetscFEDestroy(&efe));
90902e4af2aeSMatthew G. Knepley     }
90919566063dSJacob Faibussowitsch     PetscCall(DMCreateDS(edm));
90922e4af2aeSMatthew G. Knepley 
90939566063dSJacob Faibussowitsch     PetscCall(DMCreateGlobalVector(edm, errorVec));
90949566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)*errorVec, "Error"));
90959566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeL2DiffVec(dm, time, exactSol, ctxs, sol, *errorVec));
90969566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&edm));
90972e4af2aeSMatthew G. Knepley   }
90989566063dSJacob Faibussowitsch   PetscCall(PetscFree2(exactSol, ctxs));
90993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
91002e4af2aeSMatthew G. Knepley }
91019a2a23afSMatthew G. Knepley 
91029a2a23afSMatthew G. Knepley /*@
9103bb7acecfSBarry Smith   DMGetNumAuxiliaryVec - Get the number of auxiliary vectors associated with this `DM`
91049a2a23afSMatthew G. Knepley 
910520f4b53cSBarry Smith   Not Collective
91069a2a23afSMatthew G. Knepley 
91079a2a23afSMatthew G. Knepley   Input Parameter:
9108bb7acecfSBarry Smith . dm - The `DM`
91099a2a23afSMatthew G. Knepley 
91109a2a23afSMatthew G. Knepley   Output Parameter:
9111a5b23f4aSJose E. Roman . numAux - The number of auxiliary data vectors
91129a2a23afSMatthew G. Knepley 
91139a2a23afSMatthew G. Knepley   Level: advanced
91149a2a23afSMatthew G. Knepley 
9115e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMGetAuxiliaryVec()`
91169a2a23afSMatthew G. Knepley @*/
9117d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumAuxiliaryVec(DM dm, PetscInt *numAux)
9118d71ae5a4SJacob Faibussowitsch {
91199a2a23afSMatthew G. Knepley   PetscFunctionBegin;
91209a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
91219566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxGetSize(dm->auxData, numAux));
91223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
91239a2a23afSMatthew G. Knepley }
91249a2a23afSMatthew G. Knepley 
91259a2a23afSMatthew G. Knepley /*@
9126ac17215fSMatthew G. Knepley   DMGetAuxiliaryVec - Get the auxiliary vector for region specified by the given label and value, and equation part
91279a2a23afSMatthew G. Knepley 
912820f4b53cSBarry Smith   Not Collective
91299a2a23afSMatthew G. Knepley 
91309a2a23afSMatthew G. Knepley   Input Parameters:
9131bb7acecfSBarry Smith + dm    - The `DM`
9132bb7acecfSBarry Smith . label - The `DMLabel`
9133ac17215fSMatthew G. Knepley . value - The label value indicating the region
9134ac17215fSMatthew G. Knepley - part  - The equation part, or 0 if unused
91359a2a23afSMatthew G. Knepley 
91369a2a23afSMatthew G. Knepley   Output Parameter:
9137bb7acecfSBarry Smith . aux - The `Vec` holding auxiliary field data
91389a2a23afSMatthew G. Knepley 
91399bdbcad8SBarry Smith   Level: advanced
91409bdbcad8SBarry Smith 
9141bb7acecfSBarry Smith   Note:
9142bb7acecfSBarry Smith   If no auxiliary vector is found for this (label, value), (NULL, 0, 0) is checked as well.
914304c51a94SMatthew G. Knepley 
9144e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryLabels()`
91459a2a23afSMatthew G. Knepley @*/
9146d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec *aux)
9147d71ae5a4SJacob Faibussowitsch {
9148ac17215fSMatthew G. Knepley   PetscHashAuxKey key, wild = {NULL, 0, 0};
914904c51a94SMatthew G. Knepley   PetscBool       has;
91509a2a23afSMatthew G. Knepley 
91519a2a23afSMatthew G. Knepley   PetscFunctionBegin;
91529a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
91539a2a23afSMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
91549a2a23afSMatthew G. Knepley   key.label = label;
91559a2a23afSMatthew G. Knepley   key.value = value;
9156ac17215fSMatthew G. Knepley   key.part  = part;
91579566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxHas(dm->auxData, key, &has));
91589566063dSJacob Faibussowitsch   if (has) PetscCall(PetscHMapAuxGet(dm->auxData, key, aux));
91599566063dSJacob Faibussowitsch   else PetscCall(PetscHMapAuxGet(dm->auxData, wild, aux));
91603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
91619a2a23afSMatthew G. Knepley }
91629a2a23afSMatthew G. Knepley 
91639a2a23afSMatthew G. Knepley /*@
9164bb7acecfSBarry Smith   DMSetAuxiliaryVec - Set an auxiliary vector for region specified by the given label and value, and equation part
91659a2a23afSMatthew G. Knepley 
916620f4b53cSBarry Smith   Not Collective because auxiliary vectors are not parallel
91679a2a23afSMatthew G. Knepley 
91689a2a23afSMatthew G. Knepley   Input Parameters:
9169bb7acecfSBarry Smith + dm    - The `DM`
9170bb7acecfSBarry Smith . label - The `DMLabel`
91719a2a23afSMatthew G. Knepley . value - The label value indicating the region
9172ac17215fSMatthew G. Knepley . part  - The equation part, or 0 if unused
9173bb7acecfSBarry Smith - aux   - The `Vec` holding auxiliary field data
91749a2a23afSMatthew G. Knepley 
91759a2a23afSMatthew G. Knepley   Level: advanced
91769a2a23afSMatthew G. Knepley 
9177e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMCopyAuxiliaryVec()`
91789a2a23afSMatthew G. Knepley @*/
9179d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec aux)
9180d71ae5a4SJacob Faibussowitsch {
91819a2a23afSMatthew G. Knepley   Vec             old;
91829a2a23afSMatthew G. Knepley   PetscHashAuxKey key;
91839a2a23afSMatthew G. Knepley 
91849a2a23afSMatthew G. Knepley   PetscFunctionBegin;
91859a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
91869a2a23afSMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
91879a2a23afSMatthew G. Knepley   key.label = label;
91889a2a23afSMatthew G. Knepley   key.value = value;
9189ac17215fSMatthew G. Knepley   key.part  = part;
91909566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxGet(dm->auxData, key, &old));
91919566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)aux));
91929566063dSJacob Faibussowitsch   if (!aux) PetscCall(PetscHMapAuxDel(dm->auxData, key));
91939566063dSJacob Faibussowitsch   else PetscCall(PetscHMapAuxSet(dm->auxData, key, aux));
9194d705d0eaSStefano Zampini   PetscCall(VecDestroy(&old));
91953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
91969a2a23afSMatthew G. Knepley }
91979a2a23afSMatthew G. Knepley 
9198cc4c1da9SBarry Smith /*@
9199bb7acecfSBarry Smith   DMGetAuxiliaryLabels - Get the labels, values, and parts for all auxiliary vectors in this `DM`
92009a2a23afSMatthew G. Knepley 
920120f4b53cSBarry Smith   Not Collective
92029a2a23afSMatthew G. Knepley 
92039a2a23afSMatthew G. Knepley   Input Parameter:
9204bb7acecfSBarry Smith . dm - The `DM`
92059a2a23afSMatthew G. Knepley 
92069a2a23afSMatthew G. Knepley   Output Parameters:
9207bb7acecfSBarry Smith + labels - The `DMLabel`s for each `Vec`
9208bb7acecfSBarry Smith . values - The label values for each `Vec`
9209bb7acecfSBarry Smith - parts  - The equation parts for each `Vec`
92109a2a23afSMatthew G. Knepley 
92119bdbcad8SBarry Smith   Level: advanced
92129bdbcad8SBarry Smith 
9213bb7acecfSBarry Smith   Note:
9214bb7acecfSBarry Smith   The arrays passed in must be at least as large as `DMGetNumAuxiliaryVec()`.
92159a2a23afSMatthew G. Knepley 
9216e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMCopyAuxiliaryVec()`
92179a2a23afSMatthew G. Knepley @*/
9218d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryLabels(DM dm, DMLabel labels[], PetscInt values[], PetscInt parts[])
9219d71ae5a4SJacob Faibussowitsch {
92209a2a23afSMatthew G. Knepley   PetscHashAuxKey *keys;
92219a2a23afSMatthew G. Knepley   PetscInt         n, i, off = 0;
92229a2a23afSMatthew G. Knepley 
92239a2a23afSMatthew G. Knepley   PetscFunctionBegin;
92249a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
92254f572ea9SToby Isaac   PetscAssertPointer(labels, 2);
92264f572ea9SToby Isaac   PetscAssertPointer(values, 3);
92274f572ea9SToby Isaac   PetscAssertPointer(parts, 4);
92289566063dSJacob Faibussowitsch   PetscCall(DMGetNumAuxiliaryVec(dm, &n));
92299566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &keys));
92309566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxGetKeys(dm->auxData, &off, keys));
92319371c9d4SSatish Balay   for (i = 0; i < n; ++i) {
92329371c9d4SSatish Balay     labels[i] = keys[i].label;
92339371c9d4SSatish Balay     values[i] = keys[i].value;
92349371c9d4SSatish Balay     parts[i]  = keys[i].part;
92359371c9d4SSatish Balay   }
92369566063dSJacob Faibussowitsch   PetscCall(PetscFree(keys));
92373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
92389a2a23afSMatthew G. Knepley }
92399a2a23afSMatthew G. Knepley 
92409a2a23afSMatthew G. Knepley /*@
9241bb7acecfSBarry Smith   DMCopyAuxiliaryVec - Copy the auxiliary vector data on a `DM` to a new `DM`
92429a2a23afSMatthew G. Knepley 
924320f4b53cSBarry Smith   Not Collective
92449a2a23afSMatthew G. Knepley 
92459a2a23afSMatthew G. Knepley   Input Parameter:
9246bb7acecfSBarry Smith . dm - The `DM`
92479a2a23afSMatthew G. Knepley 
92489a2a23afSMatthew G. Knepley   Output Parameter:
9249bb7acecfSBarry Smith . dmNew - The new `DM`, now with the same auxiliary data
92509a2a23afSMatthew G. Knepley 
92519a2a23afSMatthew G. Knepley   Level: advanced
92529a2a23afSMatthew G. Knepley 
9253bb7acecfSBarry Smith   Note:
9254bb7acecfSBarry Smith   This is a shallow copy of the auxiliary vectors
9255bb7acecfSBarry Smith 
9256e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`
92579a2a23afSMatthew G. Knepley @*/
9258d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyAuxiliaryVec(DM dm, DM dmNew)
9259d71ae5a4SJacob Faibussowitsch {
92609a2a23afSMatthew G. Knepley   PetscFunctionBegin;
92619a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9262d705d0eaSStefano Zampini   PetscValidHeaderSpecific(dmNew, DM_CLASSID, 2);
9263d705d0eaSStefano Zampini   if (dm == dmNew) PetscFunctionReturn(PETSC_SUCCESS);
9264e4d5475eSStefano Zampini   PetscCall(DMClearAuxiliaryVec(dmNew));
9265e4d5475eSStefano Zampini 
9266e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxDestroy(&dmNew->auxData));
92679566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxDuplicate(dm->auxData, &dmNew->auxData));
9268d705d0eaSStefano Zampini   {
9269d705d0eaSStefano Zampini     Vec     *auxData;
9270d705d0eaSStefano Zampini     PetscInt n, i, off = 0;
9271d705d0eaSStefano Zampini 
9272d705d0eaSStefano Zampini     PetscCall(PetscHMapAuxGetSize(dmNew->auxData, &n));
9273d705d0eaSStefano Zampini     PetscCall(PetscMalloc1(n, &auxData));
9274d705d0eaSStefano Zampini     PetscCall(PetscHMapAuxGetVals(dmNew->auxData, &off, auxData));
9275d705d0eaSStefano Zampini     for (i = 0; i < n; ++i) PetscCall(PetscObjectReference((PetscObject)auxData[i]));
9276d705d0eaSStefano Zampini     PetscCall(PetscFree(auxData));
9277e4d5475eSStefano Zampini   }
9278e4d5475eSStefano Zampini   PetscFunctionReturn(PETSC_SUCCESS);
9279e4d5475eSStefano Zampini }
9280e4d5475eSStefano Zampini 
9281e4d5475eSStefano Zampini /*@
9282e4d5475eSStefano Zampini   DMClearAuxiliaryVec - Destroys the auxiliary vector information and creates a new empty one
9283e4d5475eSStefano Zampini 
9284e4d5475eSStefano Zampini   Not Collective
9285e4d5475eSStefano Zampini 
9286e4d5475eSStefano Zampini   Input Parameter:
9287e4d5475eSStefano Zampini . dm - The `DM`
9288e4d5475eSStefano Zampini 
9289e4d5475eSStefano Zampini   Level: advanced
9290e4d5475eSStefano Zampini 
9291e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMCopyAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`
9292e4d5475eSStefano Zampini @*/
9293e4d5475eSStefano Zampini PetscErrorCode DMClearAuxiliaryVec(DM dm)
9294e4d5475eSStefano Zampini {
9295e4d5475eSStefano Zampini   Vec     *auxData;
9296e4d5475eSStefano Zampini   PetscInt n, i, off = 0;
9297e4d5475eSStefano Zampini 
9298e4d5475eSStefano Zampini   PetscFunctionBegin;
9299e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxGetSize(dm->auxData, &n));
9300d705d0eaSStefano Zampini   PetscCall(PetscMalloc1(n, &auxData));
9301e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxGetVals(dm->auxData, &off, auxData));
9302d705d0eaSStefano Zampini   for (i = 0; i < n; ++i) PetscCall(VecDestroy(&auxData[i]));
9303d705d0eaSStefano Zampini   PetscCall(PetscFree(auxData));
9304e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxDestroy(&dm->auxData));
9305e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxCreate(&dm->auxData));
93063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
93079a2a23afSMatthew G. Knepley }
9308b5a892a1SMatthew G. Knepley 
9309cc4c1da9SBarry Smith /*@
9310bb7acecfSBarry Smith   DMPolytopeMatchOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement
9311b5a892a1SMatthew G. Knepley 
931220f4b53cSBarry Smith   Not Collective
9313b5a892a1SMatthew G. Knepley 
9314b5a892a1SMatthew G. Knepley   Input Parameters:
9315bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9316b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces
9317b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces
9318b5a892a1SMatthew G. Knepley 
9319b5a892a1SMatthew G. Knepley   Output Parameters:
9320bb7acecfSBarry Smith + ornt  - The orientation (transformation) which will take the source arrangement to the target arrangement
9321b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found
9322b5a892a1SMatthew G. Knepley 
9323b5a892a1SMatthew G. Knepley   Level: advanced
9324b5a892a1SMatthew G. Knepley 
9325bb7acecfSBarry Smith   Note:
9326bb7acecfSBarry Smith   An arrangement is a face order combined with an orientation for each face
9327bb7acecfSBarry Smith 
932885036b15SMatthew G. Knepley   Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2
9329bb7acecfSBarry Smith   that labels each arrangement (face ordering plus orientation for each face).
9330bb7acecfSBarry Smith 
9331bb7acecfSBarry Smith   See `DMPolytopeMatchVertexOrientation()` to find a new vertex orientation that takes the source vertex arrangement to the target vertex arrangement
9332bb7acecfSBarry Smith 
93331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetVertexOrientation()`
9334b5a892a1SMatthew G. Knepley @*/
9335d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt, PetscBool *found)
9336d71ae5a4SJacob Faibussowitsch {
9337b5a892a1SMatthew G. Knepley   const PetscInt cS = DMPolytopeTypeGetConeSize(ct);
933885036b15SMatthew G. Knepley   const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2;
9339b5a892a1SMatthew G. Knepley   PetscInt       o, c;
9340b5a892a1SMatthew G. Knepley 
9341b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
93429371c9d4SSatish Balay   if (!nO) {
93439371c9d4SSatish Balay     *ornt  = 0;
93449371c9d4SSatish Balay     *found = PETSC_TRUE;
93453ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
93469371c9d4SSatish Balay   }
9347b5a892a1SMatthew G. Knepley   for (o = -nO; o < nO; ++o) {
934885036b15SMatthew G. Knepley     const PetscInt *arr = DMPolytopeTypeGetArrangement(ct, o);
9349b5a892a1SMatthew G. Knepley 
93509371c9d4SSatish Balay     for (c = 0; c < cS; ++c)
93519371c9d4SSatish Balay       if (sourceCone[arr[c * 2]] != targetCone[c]) break;
93529371c9d4SSatish Balay     if (c == cS) {
93539371c9d4SSatish Balay       *ornt = o;
93549371c9d4SSatish Balay       break;
93559371c9d4SSatish Balay     }
9356b5a892a1SMatthew G. Knepley   }
9357b5a892a1SMatthew G. Knepley   *found = o == nO ? PETSC_FALSE : PETSC_TRUE;
93583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9359b5a892a1SMatthew G. Knepley }
9360b5a892a1SMatthew G. Knepley 
9361cc4c1da9SBarry Smith /*@
9362bb7acecfSBarry Smith   DMPolytopeGetOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement
9363b5a892a1SMatthew G. Knepley 
936420f4b53cSBarry Smith   Not Collective
9365b5a892a1SMatthew G. Knepley 
9366b5a892a1SMatthew G. Knepley   Input Parameters:
9367bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9368b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces
9369b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces
9370b5a892a1SMatthew G. Knepley 
93712fe279fdSBarry Smith   Output Parameter:
9372bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement
9373b5a892a1SMatthew G. Knepley 
9374b5a892a1SMatthew G. Knepley   Level: advanced
9375b5a892a1SMatthew G. Knepley 
9376bb7acecfSBarry Smith   Note:
9377bb7acecfSBarry Smith   This function is the same as `DMPolytopeMatchOrientation()` except it will generate an error if no suitable orientation can be found.
9378bb7acecfSBarry Smith 
937973ff1848SBarry Smith   Developer Note:
9380bb7acecfSBarry Smith   It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchOrientation()` and error if none is found
9381bb7acecfSBarry Smith 
93821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchOrientation()`, `DMPolytopeGetVertexOrientation()`, `DMPolytopeMatchVertexOrientation()`
9383b5a892a1SMatthew G. Knepley @*/
9384d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt)
9385d71ae5a4SJacob Faibussowitsch {
9386b5a892a1SMatthew G. Knepley   PetscBool found;
9387b5a892a1SMatthew G. Knepley 
9388b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
93899566063dSJacob Faibussowitsch   PetscCall(DMPolytopeMatchOrientation(ct, sourceCone, targetCone, ornt, &found));
93907a8be351SBarry Smith   PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]);
93913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9392b5a892a1SMatthew G. Knepley }
9393b5a892a1SMatthew G. Knepley 
9394cc4c1da9SBarry Smith /*@
9395bb7acecfSBarry Smith   DMPolytopeMatchVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement
9396b5a892a1SMatthew G. Knepley 
939720f4b53cSBarry Smith   Not Collective
9398b5a892a1SMatthew G. Knepley 
9399b5a892a1SMatthew G. Knepley   Input Parameters:
9400bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9401b5a892a1SMatthew G. Knepley . sourceVert - The source arrangement of vertices
9402b5a892a1SMatthew G. Knepley - targetVert - The target arrangement of vertices
9403b5a892a1SMatthew G. Knepley 
9404b5a892a1SMatthew G. Knepley   Output Parameters:
9405bb7acecfSBarry Smith + ornt  - The orientation (transformation) which will take the source arrangement to the target arrangement
9406b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found
9407b5a892a1SMatthew G. Knepley 
9408b5a892a1SMatthew G. Knepley   Level: advanced
9409b5a892a1SMatthew G. Knepley 
941073ff1848SBarry Smith   Notes:
9411bb7acecfSBarry Smith   An arrangement is a vertex order
9412bb7acecfSBarry Smith 
941385036b15SMatthew G. Knepley   Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2
9414bb7acecfSBarry Smith   that labels each arrangement (vertex ordering).
9415bb7acecfSBarry Smith 
9416bb7acecfSBarry Smith   See `DMPolytopeMatchOrientation()` to find a new face orientation that takes the source face arrangement to the target face arrangement
9417bb7acecfSBarry Smith 
941885036b15SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchOrientation()`, `DMPolytopeTypeGetNumVertices()`, `DMPolytopeTypeGetVertexArrangement()`
9419b5a892a1SMatthew G. Knepley @*/
9420d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchVertexOrientation(DMPolytopeType ct, const PetscInt sourceVert[], const PetscInt targetVert[], PetscInt *ornt, PetscBool *found)
9421d71ae5a4SJacob Faibussowitsch {
9422b5a892a1SMatthew G. Knepley   const PetscInt cS = DMPolytopeTypeGetNumVertices(ct);
942385036b15SMatthew G. Knepley   const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2;
9424b5a892a1SMatthew G. Knepley   PetscInt       o, c;
9425b5a892a1SMatthew G. Knepley 
9426b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
94279371c9d4SSatish Balay   if (!nO) {
94289371c9d4SSatish Balay     *ornt  = 0;
94299371c9d4SSatish Balay     *found = PETSC_TRUE;
94303ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
94319371c9d4SSatish Balay   }
9432b5a892a1SMatthew G. Knepley   for (o = -nO; o < nO; ++o) {
943385036b15SMatthew G. Knepley     const PetscInt *arr = DMPolytopeTypeGetVertexArrangement(ct, o);
9434b5a892a1SMatthew G. Knepley 
94359371c9d4SSatish Balay     for (c = 0; c < cS; ++c)
94369371c9d4SSatish Balay       if (sourceVert[arr[c]] != targetVert[c]) break;
94379371c9d4SSatish Balay     if (c == cS) {
94389371c9d4SSatish Balay       *ornt = o;
94399371c9d4SSatish Balay       break;
94409371c9d4SSatish Balay     }
9441b5a892a1SMatthew G. Knepley   }
9442b5a892a1SMatthew G. Knepley   *found = o == nO ? PETSC_FALSE : PETSC_TRUE;
94433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9444b5a892a1SMatthew G. Knepley }
9445b5a892a1SMatthew G. Knepley 
9446cc4c1da9SBarry Smith /*@
9447bb7acecfSBarry Smith   DMPolytopeGetVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement
9448b5a892a1SMatthew G. Knepley 
944920f4b53cSBarry Smith   Not Collective
9450b5a892a1SMatthew G. Knepley 
9451b5a892a1SMatthew G. Knepley   Input Parameters:
9452bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9453b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of vertices
9454b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of vertices
9455b5a892a1SMatthew G. Knepley 
94562fe279fdSBarry Smith   Output Parameter:
9457bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement
9458b5a892a1SMatthew G. Knepley 
9459b5a892a1SMatthew G. Knepley   Level: advanced
9460b5a892a1SMatthew G. Knepley 
9461bb7acecfSBarry Smith   Note:
9462bb7acecfSBarry Smith   This function is the same as `DMPolytopeMatchVertexOrientation()` except it errors if not orientation is possible.
9463bb7acecfSBarry Smith 
946473ff1848SBarry Smith   Developer Note:
9465bb7acecfSBarry Smith   It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchVertexOrientation()` and error if none is found
9466bb7acecfSBarry Smith 
94671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetOrientation()`
9468b5a892a1SMatthew G. Knepley @*/
9469d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetVertexOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt)
9470d71ae5a4SJacob Faibussowitsch {
9471b5a892a1SMatthew G. Knepley   PetscBool found;
9472b5a892a1SMatthew G. Knepley 
9473b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
94749566063dSJacob Faibussowitsch   PetscCall(DMPolytopeMatchVertexOrientation(ct, sourceCone, targetCone, ornt, &found));
94757a8be351SBarry Smith   PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]);
94763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9477b5a892a1SMatthew G. Knepley }
9478012bc364SMatthew G. Knepley 
9479cc4c1da9SBarry Smith /*@
9480012bc364SMatthew G. Knepley   DMPolytopeInCellTest - Check whether a point lies inside the reference cell of given type
9481012bc364SMatthew G. Knepley 
948220f4b53cSBarry Smith   Not Collective
9483012bc364SMatthew G. Knepley 
9484012bc364SMatthew G. Knepley   Input Parameters:
9485bb7acecfSBarry Smith + ct    - The `DMPolytopeType`
9486012bc364SMatthew G. Knepley - point - Coordinates of the point
9487012bc364SMatthew G. Knepley 
94882fe279fdSBarry Smith   Output Parameter:
9489012bc364SMatthew G. Knepley . inside - Flag indicating whether the point is inside the reference cell of given type
9490012bc364SMatthew G. Knepley 
9491012bc364SMatthew G. Knepley   Level: advanced
9492012bc364SMatthew G. Knepley 
94931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMLocatePoints()`
9494012bc364SMatthew G. Knepley @*/
9495d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeInCellTest(DMPolytopeType ct, const PetscReal point[], PetscBool *inside)
9496d71ae5a4SJacob Faibussowitsch {
9497012bc364SMatthew G. Knepley   PetscReal sum = 0.0;
9498012bc364SMatthew G. Knepley   PetscInt  d;
9499012bc364SMatthew G. Knepley 
9500012bc364SMatthew G. Knepley   PetscFunctionBegin;
9501012bc364SMatthew G. Knepley   *inside = PETSC_TRUE;
9502012bc364SMatthew G. Knepley   switch (ct) {
9503012bc364SMatthew G. Knepley   case DM_POLYTOPE_TRIANGLE:
9504012bc364SMatthew G. Knepley   case DM_POLYTOPE_TETRAHEDRON:
9505012bc364SMatthew G. Knepley     for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) {
95069371c9d4SSatish Balay       if (point[d] < -1.0) {
95079371c9d4SSatish Balay         *inside = PETSC_FALSE;
95089371c9d4SSatish Balay         break;
95099371c9d4SSatish Balay       }
9510012bc364SMatthew G. Knepley       sum += point[d];
9511012bc364SMatthew G. Knepley     }
95129371c9d4SSatish Balay     if (sum > PETSC_SMALL) {
95139371c9d4SSatish Balay       *inside = PETSC_FALSE;
95149371c9d4SSatish Balay       break;
95159371c9d4SSatish Balay     }
9516012bc364SMatthew G. Knepley     break;
9517012bc364SMatthew G. Knepley   case DM_POLYTOPE_QUADRILATERAL:
9518012bc364SMatthew G. Knepley   case DM_POLYTOPE_HEXAHEDRON:
9519012bc364SMatthew G. Knepley     for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d)
95209371c9d4SSatish Balay       if (PetscAbsReal(point[d]) > 1. + PETSC_SMALL) {
95219371c9d4SSatish Balay         *inside = PETSC_FALSE;
9522012bc364SMatthew G. Knepley         break;
95239371c9d4SSatish Balay       }
95249371c9d4SSatish Balay     break;
9525d71ae5a4SJacob Faibussowitsch   default:
9526d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported polytope type %s", DMPolytopeTypes[ct]);
9527012bc364SMatthew G. Knepley   }
95283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9529012bc364SMatthew G. Knepley }
9530adc21957SMatthew G. Knepley 
9531adc21957SMatthew G. Knepley /*@
9532adc21957SMatthew G. Knepley   DMReorderSectionSetDefault - Set flag indicating whether the local section should be reordered by default
9533adc21957SMatthew G. Knepley 
9534adc21957SMatthew G. Knepley   Logically collective
9535adc21957SMatthew G. Knepley 
9536adc21957SMatthew G. Knepley   Input Parameters:
9537adc21957SMatthew G. Knepley + dm      - The DM
9538adc21957SMatthew G. Knepley - reorder - Flag for reordering
9539adc21957SMatthew G. Knepley 
9540adc21957SMatthew G. Knepley   Level: intermediate
9541adc21957SMatthew G. Knepley 
9542adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetDefault()`
9543adc21957SMatthew G. Knepley @*/
9544adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetDefault(DM dm, DMReorderDefaultFlag reorder)
9545adc21957SMatthew G. Knepley {
9546adc21957SMatthew G. Knepley   PetscFunctionBegin;
9547adc21957SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9548adc21957SMatthew G. Knepley   PetscTryMethod(dm, "DMReorderSectionSetDefault_C", (DM, DMReorderDefaultFlag), (dm, reorder));
9549adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
9550adc21957SMatthew G. Knepley }
9551adc21957SMatthew G. Knepley 
9552adc21957SMatthew G. Knepley /*@
9553adc21957SMatthew G. Knepley   DMReorderSectionGetDefault - Get flag indicating whether the local section should be reordered by default
9554adc21957SMatthew G. Knepley 
9555adc21957SMatthew G. Knepley   Not collective
9556adc21957SMatthew G. Knepley 
9557adc21957SMatthew G. Knepley   Input Parameter:
9558adc21957SMatthew G. Knepley . dm - The DM
9559adc21957SMatthew G. Knepley 
9560adc21957SMatthew G. Knepley   Output Parameter:
9561adc21957SMatthew G. Knepley . reorder - Flag for reordering
9562adc21957SMatthew G. Knepley 
9563adc21957SMatthew G. Knepley   Level: intermediate
9564adc21957SMatthew G. Knepley 
9565adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()`
9566adc21957SMatthew G. Knepley @*/
9567adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetDefault(DM dm, DMReorderDefaultFlag *reorder)
9568adc21957SMatthew G. Knepley {
9569adc21957SMatthew G. Knepley   PetscFunctionBegin;
9570adc21957SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9571adc21957SMatthew G. Knepley   PetscAssertPointer(reorder, 2);
9572adc21957SMatthew G. Knepley   *reorder = DM_REORDER_DEFAULT_NOTSET;
9573adc21957SMatthew G. Knepley   PetscTryMethod(dm, "DMReorderSectionGetDefault_C", (DM, DMReorderDefaultFlag *), (dm, reorder));
9574adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
9575adc21957SMatthew G. Knepley }
9576adc21957SMatthew G. Knepley 
9577cc4c1da9SBarry Smith /*@
9578adc21957SMatthew G. Knepley   DMReorderSectionSetType - Set the type of local section reordering
9579adc21957SMatthew G. Knepley 
9580adc21957SMatthew G. Knepley   Logically collective
9581adc21957SMatthew G. Knepley 
9582adc21957SMatthew G. Knepley   Input Parameters:
9583adc21957SMatthew G. Knepley + dm      - The DM
9584adc21957SMatthew G. Knepley - reorder - The reordering method
9585adc21957SMatthew G. Knepley 
9586adc21957SMatthew G. Knepley   Level: intermediate
9587adc21957SMatthew G. Knepley 
9588adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetType()`, `DMReorderSectionSetDefault()`
9589adc21957SMatthew G. Knepley @*/
9590adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetType(DM dm, MatOrderingType reorder)
9591adc21957SMatthew G. Knepley {
9592adc21957SMatthew G. Knepley   PetscFunctionBegin;
9593adc21957SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9594adc21957SMatthew G. Knepley   PetscTryMethod(dm, "DMReorderSectionSetType_C", (DM, MatOrderingType), (dm, reorder));
9595adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
9596adc21957SMatthew G. Knepley }
9597adc21957SMatthew G. Knepley 
9598cc4c1da9SBarry Smith /*@
9599adc21957SMatthew G. Knepley   DMReorderSectionGetType - Get the reordering type for the local section
9600adc21957SMatthew G. Knepley 
9601adc21957SMatthew G. Knepley   Not collective
9602adc21957SMatthew G. Knepley 
9603adc21957SMatthew G. Knepley   Input Parameter:
9604adc21957SMatthew G. Knepley . dm - The DM
9605adc21957SMatthew G. Knepley 
9606adc21957SMatthew G. Knepley   Output Parameter:
9607adc21957SMatthew G. Knepley . reorder - The reordering method
9608adc21957SMatthew G. Knepley 
9609adc21957SMatthew G. Knepley   Level: intermediate
9610adc21957SMatthew G. Knepley 
9611adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()`, `DMReorderSectionGetDefault()`
9612adc21957SMatthew G. Knepley @*/
9613adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetType(DM dm, MatOrderingType *reorder)
9614adc21957SMatthew G. Knepley {
9615adc21957SMatthew G. Knepley   PetscFunctionBegin;
9616adc21957SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9617adc21957SMatthew G. Knepley   PetscAssertPointer(reorder, 2);
9618adc21957SMatthew G. Knepley   *reorder = NULL;
9619adc21957SMatthew G. Knepley   PetscTryMethod(dm, "DMReorderSectionGetType_C", (DM, MatOrderingType *), (dm, reorder));
9620adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
9621adc21957SMatthew G. Knepley }
9622