1d0295fc0SJunchao Zhang #include <petscvec.h> 2af0996ceSBarry Smith #include <petsc/private/dmimpl.h> /*I "petscdm.h" I*/ 3c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 4e6f8dbb6SToby Isaac #include <petsc/private/petscdsimpl.h> /*I "petscds.h" I*/ 53e922f36SToby Isaac #include <petscdmplex.h> 6d2b2dc1eSMatthew G. Knepley #include <petscdmceed.h> 7f19dbd58SToby Isaac #include <petscdmfield.h> 80c312b8eSJed Brown #include <petscsf.h> 92764a2aaSMatthew G. Knepley #include <petscds.h> 1047c6ae99SBarry Smith 11f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 12f918ec44SMatthew G. Knepley #include <petscfeceed.h> 13f918ec44SMatthew G. Knepley #endif 14f918ec44SMatthew G. Knepley 15cea3dcb8SSatish Balay #if !defined(PETSC_HAVE_WINDOWS_COMPILERS) 16cea3dcb8SSatish Balay #include <petsc/private/valgrind/memcheck.h> 1700d952a4SJed Brown #endif 1800d952a4SJed Brown 19732e2eb9SMatthew G Knepley PetscClassId DM_CLASSID; 20d67d17b1SMatthew G. Knepley PetscClassId DMLABEL_CLASSID; 21708be2fdSJed Brown PetscLogEvent DM_Convert, DM_GlobalToLocal, DM_LocalToGlobal, DM_LocalToLocal, DM_LocatePoints, DM_Coarsen, DM_Refine, DM_CreateInterpolation, DM_CreateRestriction, DM_CreateInjection, DM_CreateMatrix, DM_CreateMassMatrix, DM_Load, DM_AdaptInterpolator, DM_ProjectFunction; 2267a56275SMatthew G Knepley 23ea78f98cSLisandro Dalcin const char *const DMBoundaryTypes[] = {"NONE", "GHOSTED", "MIRROR", "PERIODIC", "TWIST", "DMBoundaryType", "DM_BOUNDARY_", NULL}; 24d1b3049bSMatthew G. Knepley const char *const DMBoundaryConditionTypes[] = {"INVALID", "ESSENTIAL", "NATURAL", "INVALID", "INVALID", "ESSENTIAL_FIELD", "NATURAL_FIELD", "INVALID", "INVALID", "ESSENTIAL_BD_FIELD", "NATURAL_RIEMANN", "DMBoundaryConditionType", "DM_BC_", NULL}; 250e762ea3SJed Brown const char *const DMBlockingTypes[] = {"TOPOLOGICAL_POINT", "FIELD_NODE", "DMBlockingType", "DM_BLOCKING_", NULL}; 26476787b7SMatthew G. Knepley const char *const DMPolytopeTypes[] = 27476787b7SMatthew G. Knepley {"vertex", "segment", "tensor_segment", "triangle", "quadrilateral", "tensor_quad", "tetrahedron", "hexahedron", "triangular_prism", "tensor_triangular_prism", "tensor_quadrilateral_prism", "pyramid", "FV_ghost_cell", "interior_ghost_cell", 28476787b7SMatthew G. Knepley "unknown", "unknown_cell", "unknown_face", "invalid", "DMPolytopeType", "DM_POLYTOPE_", NULL}; 292cbb9b06SVaclav Hapla const char *const DMCopyLabelsModes[] = {"replace", "keep", "fail", "DMCopyLabelsMode", "DM_COPY_LABELS_", NULL}; 3060c22052SBarry Smith 31a4121054SBarry Smith /*@ 32bb7acecfSBarry Smith DMCreate - Creates an empty `DM` object. `DM`s are the abstract objects in PETSc that mediate between meshes and discretizations and the 33bb7acecfSBarry Smith algebraic solvers, time integrators, and optimization algorithms. 34a4121054SBarry Smith 35d083f849SBarry Smith Collective 36a4121054SBarry Smith 37a4121054SBarry Smith Input Parameter: 38bb7acecfSBarry Smith . comm - The communicator for the `DM` object 39a4121054SBarry Smith 40a4121054SBarry Smith Output Parameter: 41bb7acecfSBarry Smith . dm - The `DM` object 42a4121054SBarry Smith 43a4121054SBarry Smith Level: beginner 44a4121054SBarry Smith 45bb7acecfSBarry Smith Notes: 46bb7acecfSBarry Smith See `DMType` for a brief summary of available `DM`. 47bb7acecfSBarry Smith 48bb7acecfSBarry Smith The type must then be set with `DMSetType()`. If you never call `DMSetType()` it will generate an 49bb7acecfSBarry Smith error when you try to use the dm. 50bb7acecfSBarry Smith 511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMType`, `DMDACreate()`, `DMDA`, `DMSLICED`, `DMCOMPOSITE`, `DMPLEX`, `DMMOAB`, `DMNETWORK` 52a4121054SBarry Smith @*/ 53d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreate(MPI_Comm comm, DM *dm) 54d71ae5a4SJacob Faibussowitsch { 55a4121054SBarry Smith DM v; 56e5e52638SMatthew G. Knepley PetscDS ds; 57a4121054SBarry Smith 58a4121054SBarry Smith PetscFunctionBegin; 594f572ea9SToby Isaac PetscAssertPointer(dm, 2); 60377f809aSBarry Smith 619566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 629566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(v, DM_CLASSID, "DM", "Distribution Manager", "DM", comm, DMDestroy, DMView)); 6362e5d2d2SJDBetteridge ((PetscObject)v)->non_cyclic_references = &DMCountNonCyclicReferences; 6449be4549SMatthew G. Knepley v->setupcalled = PETSC_FALSE; 6549be4549SMatthew G. Knepley v->setfromoptionscalled = PETSC_FALSE; 660298fd71SBarry Smith v->ltogmap = NULL; 67a4ea9b21SRichard Tran Mills v->bind_below = 0; 681411c6eeSJed Brown v->bs = 1; 69171400e9SBarry Smith v->coloringtype = IS_COLORING_GLOBAL; 709566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sf)); 719566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sectionSF)); 72c58f1c22SToby Isaac v->labels = NULL; 7334aa8a36SMatthew G. Knepley v->adjacency[0] = PETSC_FALSE; 7434aa8a36SMatthew G. Knepley v->adjacency[1] = PETSC_TRUE; 75c58f1c22SToby Isaac v->depthLabel = NULL; 76ba2698f1SMatthew G. Knepley v->celltypeLabel = NULL; 771bb6d2a8SBarry Smith v->localSection = NULL; 781bb6d2a8SBarry Smith v->globalSection = NULL; 793b8ba7d1SJed Brown v->defaultConstraint.section = NULL; 803b8ba7d1SJed Brown v->defaultConstraint.mat = NULL; 8179769bd5SJed Brown v->defaultConstraint.bias = NULL; 826858538eSMatthew G. Knepley v->coordinates[0].dim = PETSC_DEFAULT; 836858538eSMatthew G. Knepley v->coordinates[1].dim = PETSC_DEFAULT; 846858538eSMatthew G. Knepley v->sparseLocalize = PETSC_TRUE; 8596173672SStefano Zampini v->dim = PETSC_DETERMINE; 86435a35e8SMatthew G Knepley { 87435a35e8SMatthew G Knepley PetscInt i; 88435a35e8SMatthew G Knepley for (i = 0; i < 10; ++i) { 890298fd71SBarry Smith v->nullspaceConstructors[i] = NULL; 90f9d4088aSMatthew G. Knepley v->nearnullspaceConstructors[i] = NULL; 91435a35e8SMatthew G Knepley } 92435a35e8SMatthew G Knepley } 939566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 9407218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(v, NULL, NULL, ds, NULL)); 959566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 969566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxCreate(&v->auxData)); 9714f150ffSMatthew G. Knepley v->dmBC = NULL; 98a8fb8f29SToby Isaac v->coarseMesh = NULL; 99f4d763aaSMatthew G. Knepley v->outputSequenceNum = -1; 100cdb7a50dSMatthew G. Knepley v->outputSequenceVal = 0.0; 1019566063dSJacob Faibussowitsch PetscCall(DMSetVecType(v, VECSTANDARD)); 1029566063dSJacob Faibussowitsch PetscCall(DMSetMatType(v, MATAIJ)); 1034a7a4c06SLawrence Mitchell 1041411c6eeSJed Brown *dm = v; 1053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 106a4121054SBarry Smith } 107a4121054SBarry Smith 10838221697SMatthew G. Knepley /*@ 109bb7acecfSBarry Smith DMClone - Creates a `DM` object with the same topology as the original. 11038221697SMatthew G. Knepley 111d083f849SBarry Smith Collective 11238221697SMatthew G. Knepley 11338221697SMatthew G. Knepley Input Parameter: 114bb7acecfSBarry Smith . dm - The original `DM` object 11538221697SMatthew G. Knepley 11638221697SMatthew G. Knepley Output Parameter: 117bb7acecfSBarry Smith . newdm - The new `DM` object 11838221697SMatthew G. Knepley 11938221697SMatthew G. Knepley Level: beginner 12038221697SMatthew G. Knepley 1211cb8cacdSPatrick Sanan Notes: 122bb7acecfSBarry Smith For some `DM` implementations this is a shallow clone, the result of which may share (reference counted) information with its parent. For example, 123bb7acecfSBarry Smith `DMClone()` applied to a `DMPLEX` object will result in a new `DMPLEX` that shares the topology with the original `DMPLEX`. It does not 124bb7acecfSBarry Smith share the `PetscSection` of the original `DM`. 1251bb6d2a8SBarry Smith 126bb7acecfSBarry Smith The clone is considered set up if the original has been set up. 12789706ed2SPatrick Sanan 128bb7acecfSBarry Smith Use `DMConvert()` for a general way to create new `DM` from a given `DM` 129bb7acecfSBarry Smith 13060225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMSetType()`, `DMSetLocalSection()`, `DMSetGlobalSection()`, `DMPLEX`, `DMConvert()` 13138221697SMatthew G. Knepley @*/ 132d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClone(DM dm, DM *newdm) 133d71ae5a4SJacob Faibussowitsch { 13438221697SMatthew G. Knepley PetscSF sf; 13538221697SMatthew G. Knepley Vec coords; 13638221697SMatthew G. Knepley void *ctx; 137ec196627SMatthew G. Knepley MatOrderingType otype; 138ec196627SMatthew G. Knepley DMReorderDefaultFlag flg; 1396858538eSMatthew G. Knepley PetscInt dim, cdim, i; 14038221697SMatthew G. Knepley 14138221697SMatthew G. Knepley PetscFunctionBegin; 14238221697SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1434f572ea9SToby Isaac PetscAssertPointer(newdm, 2); 1449566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), newdm)); 1459566063dSJacob Faibussowitsch PetscCall(DMCopyLabels(dm, *newdm, PETSC_COPY_VALUES, PETSC_TRUE, DM_COPY_LABELS_FAIL)); 146ddf8437dSMatthew G. Knepley (*newdm)->leveldown = dm->leveldown; 147ddf8437dSMatthew G. Knepley (*newdm)->levelup = dm->levelup; 148c8a6034eSMark (*newdm)->prealloc_only = dm->prealloc_only; 149fc214432SJed Brown (*newdm)->prealloc_skip = dm->prealloc_skip; 1509566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->vectype)); 1519566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*newdm)->vectype)); 1529566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->mattype)); 1539566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*newdm)->mattype)); 1549566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 1559566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*newdm, dim)); 156dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, clone, newdm); 1573f22bcbcSToby Isaac (*newdm)->setupcalled = dm->setupcalled; 1589566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 1599566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*newdm, sf)); 1609566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dm, &ctx)); 1619566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(*newdm, ctx)); 162ec196627SMatthew G. Knepley PetscCall(DMReorderSectionGetDefault(dm, &flg)); 163ec196627SMatthew G. Knepley PetscCall(DMReorderSectionSetDefault(*newdm, flg)); 164ec196627SMatthew G. Knepley PetscCall(DMReorderSectionGetType(dm, &otype)); 165ec196627SMatthew G. Knepley PetscCall(DMReorderSectionSetType(*newdm, otype)); 1666858538eSMatthew G. Knepley for (i = 0; i < 2; ++i) { 1676858538eSMatthew G. Knepley if (dm->coordinates[i].dm) { 168be4c1c3eSMatthew G. Knepley DM ncdm; 169be4c1c3eSMatthew G. Knepley PetscSection cs; 1705a0206caSToby Isaac PetscInt pEnd = -1, pEndMax = -1; 171be4c1c3eSMatthew G. Knepley 1726858538eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm->coordinates[i].dm, &cs)); 1739566063dSJacob Faibussowitsch if (cs) PetscCall(PetscSectionGetChart(cs, NULL, &pEnd)); 174712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(&pEnd, &pEndMax, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 1755a0206caSToby Isaac if (pEndMax >= 0) { 1766858538eSMatthew G. Knepley PetscCall(DMClone(dm->coordinates[i].dm, &ncdm)); 1776858538eSMatthew G. Knepley PetscCall(DMCopyDisc(dm->coordinates[i].dm, ncdm)); 1789566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(ncdm, cs)); 1795e50ca95SJames Wright if (dm->coordinates[i].dm->periodic.setup) { 1805e50ca95SJames Wright ncdm->periodic.setup = dm->coordinates[i].dm->periodic.setup; 1815e50ca95SJames Wright PetscCall(ncdm->periodic.setup(ncdm)); 1825e50ca95SJames Wright } 1836858538eSMatthew G. Knepley if (i) PetscCall(DMSetCellCoordinateDM(*newdm, ncdm)); 1846858538eSMatthew G. Knepley else PetscCall(DMSetCoordinateDM(*newdm, ncdm)); 1859566063dSJacob Faibussowitsch PetscCall(DMDestroy(&ncdm)); 186be4c1c3eSMatthew G. Knepley } 187be4c1c3eSMatthew G. Knepley } 1886858538eSMatthew G. Knepley } 1899566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 1909566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*newdm, cdim)); 1919566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coords)); 19238221697SMatthew G. Knepley if (coords) { 1939566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(*newdm, coords)); 19438221697SMatthew G. Knepley } else { 1959566063dSJacob Faibussowitsch PetscCall(DMGetCoordinates(dm, &coords)); 1969566063dSJacob Faibussowitsch if (coords) PetscCall(DMSetCoordinates(*newdm, coords)); 19738221697SMatthew G. Knepley } 1986858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinatesLocal(dm, &coords)); 1996858538eSMatthew G. Knepley if (coords) { 2006858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinatesLocal(*newdm, coords)); 2016858538eSMatthew G. Knepley } else { 2026858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinates(dm, &coords)); 2036858538eSMatthew G. Knepley if (coords) PetscCall(DMSetCellCoordinates(*newdm, coords)); 2046858538eSMatthew G. Knepley } 20590b157c4SStefano Zampini { 2064fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 2076858538eSMatthew G. Knepley 2084fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 2094fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*newdm, maxCell, Lstart, L)); 210c6b900c6SMatthew G. Knepley } 21134aa8a36SMatthew G. Knepley { 21234aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 21334aa8a36SMatthew G. Knepley 2149566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, &useCone, &useClosure)); 2159566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(*newdm, PETSC_DEFAULT, useCone, useClosure)); 21634aa8a36SMatthew G. Knepley } 2173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21838221697SMatthew G. Knepley } 21938221697SMatthew G. Knepley 2205d83a8b1SBarry Smith /*@ 2215d83a8b1SBarry Smith DMSetVecType - Sets the type of vector to be created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 2229a42bb27SBarry Smith 22320f4b53cSBarry Smith Logically Collective 2249a42bb27SBarry Smith 225147403d9SBarry Smith Input Parameters: 22632546409SMatthew G. Knepley + dm - initial distributed array 227bb7acecfSBarry Smith - ctype - the vector type, for example `VECSTANDARD`, `VECCUDA`, or `VECVIENNACL` 2289a42bb27SBarry Smith 22920f4b53cSBarry Smith Options Database Key: 230147403d9SBarry Smith . -dm_vec_type ctype - the type of vector to create 2319a42bb27SBarry Smith 2329a42bb27SBarry Smith Level: intermediate 2339a42bb27SBarry Smith 23460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMGetVecType()`, `DMSetMatType()`, `DMGetMatType()`, 235bb7acecfSBarry Smith `VECSTANDARD`, `VECCUDA`, `VECVIENNACL`, `DMCreateLocalVector()`, `DMCreateGlobalVector()` 2369a42bb27SBarry Smith @*/ 23732546409SMatthew G. Knepley PetscErrorCode DMSetVecType(DM dm, VecType ctype) 238d71ae5a4SJacob Faibussowitsch { 23932546409SMatthew G. Knepley char *tmp; 24032546409SMatthew G. Knepley 2419a42bb27SBarry Smith PetscFunctionBegin; 24232546409SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 24332546409SMatthew G. Knepley PetscAssertPointer(ctype, 2); 24432546409SMatthew G. Knepley tmp = (char *)dm->vectype; 24532546409SMatthew G. Knepley PetscCall(PetscStrallocpy(ctype, (char **)&dm->vectype)); 24632546409SMatthew G. Knepley PetscCall(PetscFree(tmp)); 2473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2489a42bb27SBarry Smith } 2499a42bb27SBarry Smith 2505d83a8b1SBarry Smith /*@ 251bb7acecfSBarry Smith DMGetVecType - Gets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 252c0dedaeaSBarry Smith 25320f4b53cSBarry Smith Logically Collective 254c0dedaeaSBarry Smith 255c0dedaeaSBarry Smith Input Parameter: 256c0dedaeaSBarry Smith . da - initial distributed array 257c0dedaeaSBarry Smith 258c0dedaeaSBarry Smith Output Parameter: 259c0dedaeaSBarry Smith . ctype - the vector type 260c0dedaeaSBarry Smith 261c0dedaeaSBarry Smith Level: intermediate 262c0dedaeaSBarry Smith 26360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMSetMatType()`, `DMGetMatType()`, `DMSetVecType()` 264c0dedaeaSBarry Smith @*/ 265d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetVecType(DM da, VecType *ctype) 266d71ae5a4SJacob Faibussowitsch { 267c0dedaeaSBarry Smith PetscFunctionBegin; 268c0dedaeaSBarry Smith PetscValidHeaderSpecific(da, DM_CLASSID, 1); 269c0dedaeaSBarry Smith *ctype = da->vectype; 2703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 271c0dedaeaSBarry Smith } 272c0dedaeaSBarry Smith 2735f1ad066SMatthew G Knepley /*@ 274bb7acecfSBarry Smith VecGetDM - Gets the `DM` defining the data layout of the vector 2755f1ad066SMatthew G Knepley 27620f4b53cSBarry Smith Not Collective 2775f1ad066SMatthew G Knepley 2785f1ad066SMatthew G Knepley Input Parameter: 279bb7acecfSBarry Smith . v - The `Vec` 2805f1ad066SMatthew G Knepley 2815f1ad066SMatthew G Knepley Output Parameter: 282bb7acecfSBarry Smith . dm - The `DM` 2835f1ad066SMatthew G Knepley 2845f1ad066SMatthew G Knepley Level: intermediate 2855f1ad066SMatthew G Knepley 286bb7acecfSBarry Smith Note: 287bb7acecfSBarry Smith A `Vec` may not have a `DM` associated with it. 288bb7acecfSBarry Smith 2891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecSetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 2905f1ad066SMatthew G Knepley @*/ 291d71ae5a4SJacob Faibussowitsch PetscErrorCode VecGetDM(Vec v, DM *dm) 292d71ae5a4SJacob Faibussowitsch { 2935f1ad066SMatthew G Knepley PetscFunctionBegin; 2945f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 2954f572ea9SToby Isaac PetscAssertPointer(dm, 2); 2969566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)v, "__PETSc_dm", (PetscObject *)dm)); 2973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2985f1ad066SMatthew G Knepley } 2995f1ad066SMatthew G Knepley 3005f1ad066SMatthew G Knepley /*@ 301bb7acecfSBarry Smith VecSetDM - Sets the `DM` defining the data layout of the vector. 3025f1ad066SMatthew G Knepley 30320f4b53cSBarry Smith Not Collective 3045f1ad066SMatthew G Knepley 3055f1ad066SMatthew G Knepley Input Parameters: 306bb7acecfSBarry Smith + v - The `Vec` 307bb7acecfSBarry Smith - dm - The `DM` 3085f1ad066SMatthew G Knepley 30920f4b53cSBarry Smith Level: developer 31020f4b53cSBarry Smith 31173ff1848SBarry Smith Notes: 312bb7acecfSBarry Smith This is rarely used, generally one uses `DMGetLocalVector()` or `DMGetGlobalVector()` to create a vector associated with a given `DM` 313d9805387SMatthew G. Knepley 314bb7acecfSBarry Smith This is NOT the same as `DMCreateGlobalVector()` since it does not change the view methods or perform other customization, but merely sets the `DM` member. 315bb7acecfSBarry Smith 3161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecGetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 3175f1ad066SMatthew G Knepley @*/ 318d71ae5a4SJacob Faibussowitsch PetscErrorCode VecSetDM(Vec v, DM dm) 319d71ae5a4SJacob Faibussowitsch { 3205f1ad066SMatthew G Knepley PetscFunctionBegin; 3215f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 322d7f50e27SLisandro Dalcin if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 3239566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)v, "__PETSc_dm", (PetscObject)dm)); 3243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3255f1ad066SMatthew G Knepley } 3265f1ad066SMatthew G Knepley 327cc4c1da9SBarry Smith /*@ 328bb7acecfSBarry Smith DMSetISColoringType - Sets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 3298f1509bcSBarry Smith 33020f4b53cSBarry Smith Logically Collective 3318f1509bcSBarry Smith 3328f1509bcSBarry Smith Input Parameters: 333bb7acecfSBarry Smith + dm - the `DM` context 3348f1509bcSBarry Smith - ctype - the matrix type 3358f1509bcSBarry Smith 33620f4b53cSBarry Smith Options Database Key: 3378f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3388f1509bcSBarry Smith 3398f1509bcSBarry Smith Level: intermediate 3408f1509bcSBarry Smith 3411cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 342bb7acecfSBarry Smith `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3438f1509bcSBarry Smith @*/ 344d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetISColoringType(DM dm, ISColoringType ctype) 345d71ae5a4SJacob Faibussowitsch { 3468f1509bcSBarry Smith PetscFunctionBegin; 3478f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3488f1509bcSBarry Smith dm->coloringtype = ctype; 3493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3508f1509bcSBarry Smith } 3518f1509bcSBarry Smith 352cc4c1da9SBarry Smith /*@ 353bb7acecfSBarry Smith DMGetISColoringType - Gets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 354521d9a4cSLisandro Dalcin 35520f4b53cSBarry Smith Logically Collective 356521d9a4cSLisandro Dalcin 357521d9a4cSLisandro Dalcin Input Parameter: 358bb7acecfSBarry Smith . dm - the `DM` context 3598f1509bcSBarry Smith 3608f1509bcSBarry Smith Output Parameter: 3618f1509bcSBarry Smith . ctype - the matrix type 3628f1509bcSBarry Smith 36320f4b53cSBarry Smith Options Database Key: 3648f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3658f1509bcSBarry Smith 3668f1509bcSBarry Smith Level: intermediate 3678f1509bcSBarry Smith 3681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 36942747ad1SJacob Faibussowitsch `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3708f1509bcSBarry Smith @*/ 371d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetISColoringType(DM dm, ISColoringType *ctype) 372d71ae5a4SJacob Faibussowitsch { 3738f1509bcSBarry Smith PetscFunctionBegin; 3748f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3758f1509bcSBarry Smith *ctype = dm->coloringtype; 3763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3778f1509bcSBarry Smith } 3788f1509bcSBarry Smith 379cc4c1da9SBarry Smith /*@ 380bb7acecfSBarry Smith DMSetMatType - Sets the type of matrix created with `DMCreateMatrix()` 3818f1509bcSBarry Smith 38220f4b53cSBarry Smith Logically Collective 3838f1509bcSBarry Smith 3848f1509bcSBarry Smith Input Parameters: 385bb7acecfSBarry Smith + dm - the `DM` context 386bb7acecfSBarry Smith - ctype - the matrix type, for example `MATMPIAIJ` 387521d9a4cSLisandro Dalcin 38820f4b53cSBarry Smith Options Database Key: 389bb7acecfSBarry Smith . -dm_mat_type ctype - the type of the matrix to create, for example mpiaij 390521d9a4cSLisandro Dalcin 391521d9a4cSLisandro Dalcin Level: intermediate 392521d9a4cSLisandro Dalcin 39342747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatType`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMGetMatType()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()` 394521d9a4cSLisandro Dalcin @*/ 395d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatType(DM dm, MatType ctype) 396d71ae5a4SJacob Faibussowitsch { 39732546409SMatthew G. Knepley char *tmp; 39832546409SMatthew G. Knepley 399521d9a4cSLisandro Dalcin PetscFunctionBegin; 400521d9a4cSLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 40132546409SMatthew G. Knepley PetscAssertPointer(ctype, 2); 40232546409SMatthew G. Knepley tmp = (char *)dm->mattype; 4039566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(ctype, (char **)&dm->mattype)); 40432546409SMatthew G. Knepley PetscCall(PetscFree(tmp)); 4053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 406521d9a4cSLisandro Dalcin } 407521d9a4cSLisandro Dalcin 408cc4c1da9SBarry Smith /*@ 40920f4b53cSBarry Smith DMGetMatType - Gets the type of matrix that would be created with `DMCreateMatrix()` 410c0dedaeaSBarry Smith 41120f4b53cSBarry Smith Logically Collective 412c0dedaeaSBarry Smith 413c0dedaeaSBarry Smith Input Parameter: 414bb7acecfSBarry Smith . dm - the `DM` context 415c0dedaeaSBarry Smith 416c0dedaeaSBarry Smith Output Parameter: 417c0dedaeaSBarry Smith . ctype - the matrix type 418c0dedaeaSBarry Smith 419c0dedaeaSBarry Smith Level: intermediate 420c0dedaeaSBarry Smith 42142747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMSetMatType()` 422c0dedaeaSBarry Smith @*/ 423d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetMatType(DM dm, MatType *ctype) 424d71ae5a4SJacob Faibussowitsch { 425c0dedaeaSBarry Smith PetscFunctionBegin; 426c0dedaeaSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 427c0dedaeaSBarry Smith *ctype = dm->mattype; 4283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 429c0dedaeaSBarry Smith } 430c0dedaeaSBarry Smith 431c688c046SMatthew G Knepley /*@ 432bb7acecfSBarry Smith MatGetDM - Gets the `DM` defining the data layout of the matrix 433c688c046SMatthew G Knepley 43420f4b53cSBarry Smith Not Collective 435c688c046SMatthew G Knepley 436c688c046SMatthew G Knepley Input Parameter: 437bb7acecfSBarry Smith . A - The `Mat` 438c688c046SMatthew G Knepley 439c688c046SMatthew G Knepley Output Parameter: 440bb7acecfSBarry Smith . dm - The `DM` 441c688c046SMatthew G Knepley 442c688c046SMatthew G Knepley Level: intermediate 443c688c046SMatthew G Knepley 444bb7acecfSBarry Smith Note: 445bb7acecfSBarry Smith A matrix may not have a `DM` associated with it 446bb7acecfSBarry Smith 44773ff1848SBarry Smith Developer Note: 448bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with the `Mat` through a `PetscObjectCompose()` operation 4498f1509bcSBarry Smith 4501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatSetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 451c688c046SMatthew G Knepley @*/ 452d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDM(Mat A, DM *dm) 453d71ae5a4SJacob Faibussowitsch { 454c688c046SMatthew G Knepley PetscFunctionBegin; 455c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4564f572ea9SToby Isaac PetscAssertPointer(dm, 2); 4579566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_dm", (PetscObject *)dm)); 4583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 459c688c046SMatthew G Knepley } 460c688c046SMatthew G Knepley 461c688c046SMatthew G Knepley /*@ 462bb7acecfSBarry Smith MatSetDM - Sets the `DM` defining the data layout of the matrix 463c688c046SMatthew G Knepley 46420f4b53cSBarry Smith Not Collective 465c688c046SMatthew G Knepley 466c688c046SMatthew G Knepley Input Parameters: 46720f4b53cSBarry Smith + A - The `Mat` 46820f4b53cSBarry Smith - dm - The `DM` 469c688c046SMatthew G Knepley 470bb7acecfSBarry Smith Level: developer 471c688c046SMatthew G Knepley 472bb7acecfSBarry Smith Note: 473bb7acecfSBarry Smith This is rarely used in practice, rather `DMCreateMatrix()` is used to create a matrix associated with a particular `DM` 474bb7acecfSBarry Smith 47573ff1848SBarry Smith Developer Note: 476bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with 477bb7acecfSBarry Smith the `Mat` through a `PetscObjectCompose()` operation 4788f1509bcSBarry Smith 4791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatGetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 480c688c046SMatthew G Knepley @*/ 481d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetDM(Mat A, DM dm) 482d71ae5a4SJacob Faibussowitsch { 483c688c046SMatthew G Knepley PetscFunctionBegin; 484c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4858865f1eaSKarl Rupp if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 4869566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_dm", (PetscObject)dm)); 4873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 488c688c046SMatthew G Knepley } 489c688c046SMatthew G Knepley 490cc4c1da9SBarry Smith /*@ 491bb7acecfSBarry Smith DMSetOptionsPrefix - Sets the prefix prepended to all option names when searching through the options database 4929a42bb27SBarry Smith 49320f4b53cSBarry Smith Logically Collective 4949a42bb27SBarry Smith 495d8d19677SJose E. Roman Input Parameters: 49660225df5SJacob Faibussowitsch + dm - the `DM` context 497bb7acecfSBarry Smith - prefix - the prefix to prepend 4989a42bb27SBarry Smith 49920f4b53cSBarry Smith Level: advanced 50020f4b53cSBarry Smith 50120f4b53cSBarry Smith Note: 5029a42bb27SBarry Smith A hyphen (-) must NOT be given at the beginning of the prefix name. 5039a42bb27SBarry Smith The first character of all runtime options is AUTOMATICALLY the hyphen. 5049a42bb27SBarry Smith 5051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscObjectSetOptionsPrefix()`, `DMSetFromOptions()` 5069a42bb27SBarry Smith @*/ 507d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOptionsPrefix(DM dm, const char prefix[]) 508d71ae5a4SJacob Faibussowitsch { 5099a42bb27SBarry Smith PetscFunctionBegin; 5109a42bb27SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5119566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, prefix)); 5121baa6e33SBarry Smith if (dm->sf) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sf, prefix)); 5131baa6e33SBarry Smith if (dm->sectionSF) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sectionSF, prefix)); 5143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5159a42bb27SBarry Smith } 5169a42bb27SBarry Smith 517cc4c1da9SBarry Smith /*@ 518da81f932SPierre Jolivet DMAppendOptionsPrefix - Appends an additional string to an already existing prefix used for searching for 519bb7acecfSBarry Smith `DM` options in the options database. 52031697293SDave May 52120f4b53cSBarry Smith Logically Collective 52231697293SDave May 52331697293SDave May Input Parameters: 524bb7acecfSBarry Smith + dm - the `DM` context 525bb7acecfSBarry Smith - prefix - the string to append to the current prefix 52631697293SDave May 52720f4b53cSBarry Smith Level: advanced 52820f4b53cSBarry Smith 52920f4b53cSBarry Smith Note: 530bb7acecfSBarry Smith If the `DM` does not currently have an options prefix then this value is used alone as the prefix as if `DMSetOptionsPrefix()` had been called. 53131697293SDave May A hyphen (-) must NOT be given at the beginning of the prefix name. 53231697293SDave May The first character of all runtime options is AUTOMATICALLY the hyphen. 53331697293SDave May 5341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMGetOptionsPrefix()`, `PetscObjectAppendOptionsPrefix()`, `DMSetFromOptions()` 53531697293SDave May @*/ 536d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAppendOptionsPrefix(DM dm, const char prefix[]) 537d71ae5a4SJacob Faibussowitsch { 53831697293SDave May PetscFunctionBegin; 53931697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5409566063dSJacob Faibussowitsch PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, prefix)); 5413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 54231697293SDave May } 54331697293SDave May 544cc4c1da9SBarry Smith /*@ 54531697293SDave May DMGetOptionsPrefix - Gets the prefix used for searching for all 546bb7acecfSBarry Smith DM options in the options database. 54731697293SDave May 54831697293SDave May Not Collective 54931697293SDave May 5502fe279fdSBarry Smith Input Parameter: 551bb7acecfSBarry Smith . dm - the `DM` context 55231697293SDave May 5532fe279fdSBarry Smith Output Parameter: 55431697293SDave May . prefix - pointer to the prefix string used is returned 55531697293SDave May 55631697293SDave May Level: advanced 55731697293SDave May 55873ff1848SBarry Smith Fortran Note: 55920f4b53cSBarry Smith Pass in a string 'prefix' of 56020f4b53cSBarry Smith sufficient length to hold the prefix. 56120f4b53cSBarry Smith 5621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMAppendOptionsPrefix()`, `DMSetFromOptions()` 56331697293SDave May @*/ 564d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOptionsPrefix(DM dm, const char *prefix[]) 565d71ae5a4SJacob Faibussowitsch { 56631697293SDave May PetscFunctionBegin; 56731697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5689566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, prefix)); 5693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57031697293SDave May } 57131697293SDave May 57262e5d2d2SJDBetteridge static PetscErrorCode DMCountNonCyclicReferences_Internal(DM dm, PetscBool recurseCoarse, PetscBool recurseFine, PetscInt *ncrefct) 573d71ae5a4SJacob Faibussowitsch { 5746eb26441SStefano Zampini PetscInt refct = ((PetscObject)dm)->refct; 57588bdff64SToby Isaac 57688bdff64SToby Isaac PetscFunctionBegin; 577aab5bcd8SJed Brown *ncrefct = 0; 57888bdff64SToby Isaac if (dm->coarseMesh && dm->coarseMesh->fineMesh == dm) { 57988bdff64SToby Isaac refct--; 58088bdff64SToby Isaac if (recurseCoarse) { 58188bdff64SToby Isaac PetscInt coarseCount; 58288bdff64SToby Isaac 58362e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->coarseMesh, PETSC_TRUE, PETSC_FALSE, &coarseCount)); 58488bdff64SToby Isaac refct += coarseCount; 58588bdff64SToby Isaac } 58688bdff64SToby Isaac } 58788bdff64SToby Isaac if (dm->fineMesh && dm->fineMesh->coarseMesh == dm) { 58888bdff64SToby Isaac refct--; 58988bdff64SToby Isaac if (recurseFine) { 59088bdff64SToby Isaac PetscInt fineCount; 59188bdff64SToby Isaac 59262e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->fineMesh, PETSC_FALSE, PETSC_TRUE, &fineCount)); 59388bdff64SToby Isaac refct += fineCount; 59488bdff64SToby Isaac } 59588bdff64SToby Isaac } 59688bdff64SToby Isaac *ncrefct = refct; 5973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 59888bdff64SToby Isaac } 59988bdff64SToby Isaac 60062e5d2d2SJDBetteridge /* Generic wrapper for DMCountNonCyclicReferences_Internal() */ 60162e5d2d2SJDBetteridge PetscErrorCode DMCountNonCyclicReferences(PetscObject dm, PetscInt *ncrefct) 60262e5d2d2SJDBetteridge { 60362e5d2d2SJDBetteridge PetscFunctionBegin; 60462e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal((DM)dm, PETSC_TRUE, PETSC_TRUE, ncrefct)); 6053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 60662e5d2d2SJDBetteridge } 60762e5d2d2SJDBetteridge 608d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyLabelLinkList_Internal(DM dm) 609d71ae5a4SJacob Faibussowitsch { 6105d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 611354557abSToby Isaac 612354557abSToby Isaac PetscFunctionBegin; 613354557abSToby Isaac /* destroy the labels */ 614354557abSToby Isaac while (next) { 615354557abSToby Isaac DMLabelLink tmp = next->next; 616354557abSToby Isaac 6175d80c0bfSVaclav Hapla if (next->label == dm->depthLabel) dm->depthLabel = NULL; 618ba2698f1SMatthew G. Knepley if (next->label == dm->celltypeLabel) dm->celltypeLabel = NULL; 6199566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 6209566063dSJacob Faibussowitsch PetscCall(PetscFree(next)); 621354557abSToby Isaac next = tmp; 622354557abSToby Isaac } 6235d80c0bfSVaclav Hapla dm->labels = NULL; 6243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 625354557abSToby Isaac } 626354557abSToby Isaac 62766976f2fSJacob Faibussowitsch static PetscErrorCode DMDestroyCoordinates_Private(DMCoordinates *c) 628d71ae5a4SJacob Faibussowitsch { 6296858538eSMatthew G. Knepley PetscFunctionBegin; 6306858538eSMatthew G. Knepley c->dim = PETSC_DEFAULT; 6316858538eSMatthew G. Knepley PetscCall(DMDestroy(&c->dm)); 6326858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->x)); 6336858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->xl)); 6346858538eSMatthew G. Knepley PetscCall(DMFieldDestroy(&c->field)); 6353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6366858538eSMatthew G. Knepley } 6376858538eSMatthew G. Knepley 6380764c050SBarry Smith /*@ 639bb7acecfSBarry Smith DMDestroy - Destroys a `DM`. 64047c6ae99SBarry Smith 64120f4b53cSBarry Smith Collective 64247c6ae99SBarry Smith 64347c6ae99SBarry Smith Input Parameter: 644bb7acecfSBarry Smith . dm - the `DM` object to destroy 64547c6ae99SBarry Smith 64647c6ae99SBarry Smith Level: developer 64747c6ae99SBarry Smith 6481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMType`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 64947c6ae99SBarry Smith @*/ 650d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroy(DM *dm) 651d71ae5a4SJacob Faibussowitsch { 6526eb26441SStefano Zampini PetscInt cnt; 65347c6ae99SBarry Smith 65447c6ae99SBarry Smith PetscFunctionBegin; 6553ba16761SJacob Faibussowitsch if (!*dm) PetscFunctionReturn(PETSC_SUCCESS); 656f4f49eeaSPierre Jolivet PetscValidHeaderSpecific(*dm, DM_CLASSID, 1); 65787e657c6SBarry Smith 65888bdff64SToby Isaac /* count all non-cyclic references in the doubly-linked list of coarse<->fine meshes */ 65962e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(*dm, PETSC_TRUE, PETSC_TRUE, &cnt)); 660f4f49eeaSPierre Jolivet --((PetscObject)*dm)->refct; 6619371c9d4SSatish Balay if (--cnt > 0) { 6629371c9d4SSatish Balay *dm = NULL; 6633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6649371c9d4SSatish Balay } 665f4f49eeaSPierre Jolivet if (((PetscObject)*dm)->refct < 0) PetscFunctionReturn(PETSC_SUCCESS); 666f4f49eeaSPierre Jolivet ((PetscObject)*dm)->refct = 0; 6676eb26441SStefano Zampini 6689566063dSJacob Faibussowitsch PetscCall(DMClearGlobalVectors(*dm)); 6699566063dSJacob Faibussowitsch PetscCall(DMClearLocalVectors(*dm)); 670974ca4ecSStefano Zampini PetscCall(DMClearNamedGlobalVectors(*dm)); 671974ca4ecSStefano Zampini PetscCall(DMClearNamedLocalVectors(*dm)); 6722348bcf4SPeter Brune 673b17ce1afSJed Brown /* Destroy the list of hooks */ 674c833c3b5SJed Brown { 675c833c3b5SJed Brown DMCoarsenHookLink link, next; 676b17ce1afSJed Brown for (link = (*dm)->coarsenhook; link; link = next) { 677b17ce1afSJed Brown next = link->next; 6789566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 679b17ce1afSJed Brown } 6800298fd71SBarry Smith (*dm)->coarsenhook = NULL; 681c833c3b5SJed Brown } 682c833c3b5SJed Brown { 683c833c3b5SJed Brown DMRefineHookLink link, next; 684c833c3b5SJed Brown for (link = (*dm)->refinehook; link; link = next) { 685c833c3b5SJed Brown next = link->next; 6869566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 687c833c3b5SJed Brown } 6880298fd71SBarry Smith (*dm)->refinehook = NULL; 689c833c3b5SJed Brown } 690be081cd6SPeter Brune { 691be081cd6SPeter Brune DMSubDomainHookLink link, next; 692be081cd6SPeter Brune for (link = (*dm)->subdomainhook; link; link = next) { 693be081cd6SPeter Brune next = link->next; 6949566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 695be081cd6SPeter Brune } 6960298fd71SBarry Smith (*dm)->subdomainhook = NULL; 697be081cd6SPeter Brune } 698baf369e7SPeter Brune { 699baf369e7SPeter Brune DMGlobalToLocalHookLink link, next; 700baf369e7SPeter Brune for (link = (*dm)->gtolhook; link; link = next) { 701baf369e7SPeter Brune next = link->next; 7029566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 703baf369e7SPeter Brune } 7040298fd71SBarry Smith (*dm)->gtolhook = NULL; 705baf369e7SPeter Brune } 706d4d07f1eSToby Isaac { 707d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, next; 708d4d07f1eSToby Isaac for (link = (*dm)->ltoghook; link; link = next) { 709d4d07f1eSToby Isaac next = link->next; 7109566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 711d4d07f1eSToby Isaac } 712d4d07f1eSToby Isaac (*dm)->ltoghook = NULL; 713d4d07f1eSToby Isaac } 714aa1993deSMatthew G Knepley /* Destroy the work arrays */ 715aa1993deSMatthew G Knepley { 716aa1993deSMatthew G Knepley DMWorkLink link, next; 717936381afSPierre Jolivet PetscCheck(!(*dm)->workout, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Work array still checked out %p %p", (void *)(*dm)->workout, (void *)(*dm)->workout->mem); 718aa1993deSMatthew G Knepley for (link = (*dm)->workin; link; link = next) { 719aa1993deSMatthew G Knepley next = link->next; 7209566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 7219566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 722aa1993deSMatthew G Knepley } 7230298fd71SBarry Smith (*dm)->workin = NULL; 724aa1993deSMatthew G Knepley } 725c58f1c22SToby Isaac /* destroy the labels */ 7269566063dSJacob Faibussowitsch PetscCall(DMDestroyLabelLinkList_Internal(*dm)); 727f4cdcedcSVaclav Hapla /* destroy the fields */ 7289566063dSJacob Faibussowitsch PetscCall(DMClearFields(*dm)); 729f4cdcedcSVaclav Hapla /* destroy the boundaries */ 730e6f8dbb6SToby Isaac { 731e6f8dbb6SToby Isaac DMBoundary next = (*dm)->boundary; 732e6f8dbb6SToby Isaac while (next) { 733e6f8dbb6SToby Isaac DMBoundary b = next; 734e6f8dbb6SToby Isaac 735e6f8dbb6SToby Isaac next = b->next; 7369566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 737e6f8dbb6SToby Isaac } 738e6f8dbb6SToby Isaac } 739b17ce1afSJed Brown 7409566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmksp)); 7419566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmsnes)); 7429566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmts)); 74352536dc3SBarry Smith 74448a46eb9SPierre Jolivet if ((*dm)->ctx && (*dm)->ctxdestroy) PetscCall((*(*dm)->ctxdestroy)(&(*dm)->ctx)); 7459566063dSJacob Faibussowitsch PetscCall(MatFDColoringDestroy(&(*dm)->fd)); 7469566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&(*dm)->ltogmap)); 7479566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->vectype)); 7489566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->mattype)); 74988ed4aceSMatthew G Knepley 7509566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->localSection)); 7519566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->globalSection)); 752adc21957SMatthew G. Knepley PetscCall(PetscFree((*dm)->reorderSectionType)); 7539566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&(*dm)->map)); 7549566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->defaultConstraint.section)); 7559566063dSJacob Faibussowitsch PetscCall(MatDestroy(&(*dm)->defaultConstraint.mat)); 7569566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sf)); 7579566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sectionSF)); 75848a46eb9SPierre Jolivet if ((*dm)->sfNatural) PetscCall(PetscSFDestroy(&(*dm)->sfNatural)); 7599566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)(*dm)->sfMigration)); 760e4d5475eSStefano Zampini PetscCall(DMClearAuxiliaryVec(*dm)); 7619566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDestroy(&(*dm)->auxData)); 76248a46eb9SPierre Jolivet if ((*dm)->coarseMesh && (*dm)->coarseMesh->fineMesh == *dm) PetscCall(DMSetFineDM((*dm)->coarseMesh, NULL)); 7636eb26441SStefano Zampini 7649566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->coarseMesh)); 76548a46eb9SPierre Jolivet if ((*dm)->fineMesh && (*dm)->fineMesh->coarseMesh == *dm) PetscCall(DMSetCoarseDM((*dm)->fineMesh, NULL)); 7669566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->fineMesh)); 7674fb89dddSMatthew G. Knepley PetscCall(PetscFree((*dm)->Lstart)); 7689566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->L)); 7699566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->maxCell)); 7706858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[0])); 7716858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[1])); 7729566063dSJacob Faibussowitsch if ((*dm)->transformDestroy) PetscCall((*(*dm)->transformDestroy)(*dm, (*dm)->transformCtx)); 7739566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->transformDM)); 7749566063dSJacob Faibussowitsch PetscCall(VecDestroy(&(*dm)->transform)); 775ddedc8f6SJames Wright for (PetscInt i = 0; i < (*dm)->periodic.num_affines; i++) { 776ddedc8f6SJames Wright PetscCall(VecScatterDestroy(&(*dm)->periodic.affine_to_local[i])); 777ddedc8f6SJames Wright PetscCall(VecDestroy(&(*dm)->periodic.affine[i])); 778ddedc8f6SJames Wright } 779ddedc8f6SJames Wright if ((*dm)->periodic.num_affines > 0) PetscCall(PetscFree2((*dm)->periodic.affine_to_local, (*dm)->periodic.affine)); 7806636e97aSMatthew G Knepley 7819566063dSJacob Faibussowitsch PetscCall(DMClearDS(*dm)); 7829566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->dmBC)); 783e04113cfSBarry Smith /* if memory was published with SAWs then destroy it */ 7849566063dSJacob Faibussowitsch PetscCall(PetscObjectSAWsViewOff((PetscObject)*dm)); 785732e2eb9SMatthew G Knepley 786213acdd3SPierre Jolivet PetscTryTypeMethod(*dm, destroy); 7879566063dSJacob Faibussowitsch PetscCall(DMMonitorCancel(*dm)); 788d2b2dc1eSMatthew G. Knepley PetscCall(DMCeedDestroy(&(*dm)->dmceed)); 789f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 7909566063dSJacob Faibussowitsch PetscCallCEED(CeedElemRestrictionDestroy(&(*dm)->ceedERestrict)); 7919566063dSJacob Faibussowitsch PetscCallCEED(CeedDestroy(&(*dm)->ceed)); 792f918ec44SMatthew G. Knepley #endif 793435a35e8SMatthew G Knepley /* We do not destroy (*dm)->data here so that we can reference count backend objects */ 7949566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(dm)); 7953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 79647c6ae99SBarry Smith } 79747c6ae99SBarry Smith 798d7bf68aeSBarry Smith /*@ 799bb7acecfSBarry Smith DMSetUp - sets up the data structures inside a `DM` object 800d7bf68aeSBarry Smith 80120f4b53cSBarry Smith Collective 802d7bf68aeSBarry Smith 803d7bf68aeSBarry Smith Input Parameter: 804bb7acecfSBarry Smith . dm - the `DM` object to setup 805d7bf68aeSBarry Smith 806bb7acecfSBarry Smith Level: intermediate 807d7bf68aeSBarry Smith 808bb7acecfSBarry Smith Note: 809bb7acecfSBarry Smith This is usually called after various parameter setting operations and `DMSetFromOptions()` are called on the `DM` 810bb7acecfSBarry Smith 8111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 812d7bf68aeSBarry Smith @*/ 813d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUp(DM dm) 814d71ae5a4SJacob Faibussowitsch { 815d7bf68aeSBarry Smith PetscFunctionBegin; 816171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8173ba16761SJacob Faibussowitsch if (dm->setupcalled) PetscFunctionReturn(PETSC_SUCCESS); 818dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setup); 8198387afaaSJed Brown dm->setupcalled = PETSC_TRUE; 8203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 821d7bf68aeSBarry Smith } 822d7bf68aeSBarry Smith 823d7bf68aeSBarry Smith /*@ 824bb7acecfSBarry Smith DMSetFromOptions - sets parameters in a `DM` from the options database 825d7bf68aeSBarry Smith 82620f4b53cSBarry Smith Collective 827d7bf68aeSBarry Smith 828d7bf68aeSBarry Smith Input Parameter: 829bb7acecfSBarry Smith . dm - the `DM` object to set options for 830d7bf68aeSBarry Smith 83120f4b53cSBarry Smith Options Database Keys: 832bb7acecfSBarry Smith + -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 833bb7acecfSBarry Smith . -dm_vec_type <type> - type of vector to create inside `DM` 834bb7acecfSBarry Smith . -dm_mat_type <type> - type of matrix to create inside `DM` 835a4ea9b21SRichard Tran Mills . -dm_is_coloring_type - <global or local> 83620f4b53cSBarry Smith . -dm_bind_below <n> - bind (force execution on CPU) for `Vec` and `Mat` objects with local size (number of vector entries or matrix rows) below n; currently only supported for `DMDA` 83720f4b53cSBarry Smith . -dm_plex_filename <str> - File containing a mesh 8389318fe57SMatthew G. Knepley . -dm_plex_boundary_filename <str> - File containing a mesh boundary 839cd7e8a5eSksagiyam . -dm_plex_name <str> - Name of the mesh in the file 8405dca41c3SJed Brown . -dm_plex_shape <shape> - The domain shape, such as `BOX`, `SPHERE`, etc. 8419318fe57SMatthew G. Knepley . -dm_plex_cell <ct> - Cell shape 8429318fe57SMatthew G. Knepley . -dm_plex_reference_cell_domain <bool> - Use a reference cell domain 8439318fe57SMatthew G. Knepley . -dm_plex_dim <dim> - Set the topological dimension 844bb7acecfSBarry Smith . -dm_plex_simplex <bool> - `PETSC_TRUE` for simplex elements, `PETSC_FALSE` for tensor elements 845bb7acecfSBarry Smith . -dm_plex_interpolate <bool> - `PETSC_TRUE` turns on topological interpolation (creating edges and faces) 8469318fe57SMatthew G. Knepley . -dm_plex_scale <sc> - Scale factor for mesh coordinates 847be664eb1SMatthew G. Knepley . -dm_coord_remap <bool> - Map coordinates using a function 848be664eb1SMatthew G. Knepley . -dm_coord_map <mapname> - Select a builtin coordinate map 849be664eb1SMatthew G. Knepley . -dm_coord_map_params <p0,p1,p2,...> - Set coordinate mapping parameters 8509318fe57SMatthew G. Knepley . -dm_plex_box_faces <m,n,p> - Number of faces along each dimension 8519318fe57SMatthew G. Knepley . -dm_plex_box_lower <x,y,z> - Specify lower-left-bottom coordinates for the box 8529318fe57SMatthew G. Knepley . -dm_plex_box_upper <x,y,z> - Specify upper-right-top coordinates for the box 853bb7acecfSBarry Smith . -dm_plex_box_bd <bx,by,bz> - Specify the `DMBoundaryType` for each direction 8549318fe57SMatthew G. Knepley . -dm_plex_sphere_radius <r> - The sphere radius 8559318fe57SMatthew G. Knepley . -dm_plex_ball_radius <r> - Radius of the ball 8569318fe57SMatthew G. Knepley . -dm_plex_cylinder_bd <bz> - Boundary type in the z direction 8579318fe57SMatthew G. Knepley . -dm_plex_cylinder_num_wedges <n> - Number of wedges around the cylinder 858bdf63967SMatthew G. Knepley . -dm_plex_reorder <order> - Reorder the mesh using the specified algorithm 8599318fe57SMatthew G. Knepley . -dm_refine_pre <n> - The number of refinements before distribution 8609318fe57SMatthew G. Knepley . -dm_refine_uniform_pre <bool> - Flag for uniform refinement before distribution 8619318fe57SMatthew G. Knepley . -dm_refine_volume_limit_pre <v> - The maximum cell volume after refinement before distribution 8629318fe57SMatthew G. Knepley . -dm_refine <n> - The number of refinements after distribution 863bdf63967SMatthew G. Knepley . -dm_extrude <l> - Activate extrusion and specify the number of layers to extrude 864d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thickness <t> - The total thickness of extruded layers 865d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_use_tensor <bool> - Use tensor cells when extruding 866d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_symmetric <bool> - Extrude layers symmetrically about the surface 867d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_normal <n0,...,nd> - Specify the extrusion direction 868d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thicknesses <t0,...,tl> - Specify thickness of each layer 869909dfd52SMatthew G. Knepley . -dm_plex_create_fv_ghost_cells - Flag to create finite volume ghost cells on the boundary 870909dfd52SMatthew G. Knepley . -dm_plex_fv_ghost_cells_label <name> - Label name for ghost cells boundary 8719318fe57SMatthew G. Knepley . -dm_distribute <bool> - Flag to redistribute a mesh among processes 8729318fe57SMatthew G. Knepley . -dm_distribute_overlap <n> - The size of the overlap halo 8739318fe57SMatthew G. Knepley . -dm_plex_adj_cone <bool> - Set adjacency direction 87420f4b53cSBarry Smith . -dm_plex_adj_closure <bool> - Set adjacency size 875d2b2dc1eSMatthew G. Knepley . -dm_plex_use_ceed <bool> - Use LibCEED as the FEM backend 87620f4b53cSBarry Smith . -dm_plex_check_symmetry - Check that the adjacency information in the mesh is symmetric - `DMPlexCheckSymmetry()` 877bb7acecfSBarry Smith . -dm_plex_check_skeleton - Check that each cell has the correct number of vertices (only for homogeneous simplex or tensor meshes) - `DMPlexCheckSkeleton()` 878bb7acecfSBarry Smith . -dm_plex_check_faces - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type - `DMPlexCheckFaces()` 879bb7acecfSBarry Smith . -dm_plex_check_geometry - Check that cells have positive volume - `DMPlexCheckGeometry()` 880bb7acecfSBarry Smith . -dm_plex_check_pointsf - Check some necessary conditions for `PointSF` - `DMPlexCheckPointSF()` 881bb7acecfSBarry Smith . -dm_plex_check_interface_cones - Check points on inter-partition interfaces have conforming order of cone points - `DMPlexCheckInterfaceCones()` 882384a6580SVaclav Hapla - -dm_plex_check_all - Perform all the checks above 883d7bf68aeSBarry Smith 88495eb5ee5SVaclav Hapla Level: intermediate 88595eb5ee5SVaclav Hapla 8868e704042SBarry Smith Note: 8878e704042SBarry Smith For some `DMType` such as `DMDA` this cannot be called after `DMSetUp()` has been called. 8888e704042SBarry Smith 8891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 890bb7acecfSBarry Smith `DMPlexCheckSymmetry()`, `DMPlexCheckSkeleton()`, `DMPlexCheckFaces()`, `DMPlexCheckGeometry()`, `DMPlexCheckPointSF()`, `DMPlexCheckInterfaceCones()`, 8918e704042SBarry Smith `DMSetOptionsPrefix()`, `DMType`, `DMPLEX`, `DMDA`, `DMSetUp()` 892d7bf68aeSBarry Smith @*/ 893d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFromOptions(DM dm) 894d71ae5a4SJacob Faibussowitsch { 8957781c08eSBarry Smith char typeName[256]; 896ca266f36SBarry Smith PetscBool flg; 897d7bf68aeSBarry Smith 898d7bf68aeSBarry Smith PetscFunctionBegin; 899171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 90049be4549SMatthew G. Knepley dm->setfromoptionscalled = PETSC_TRUE; 9019566063dSJacob Faibussowitsch if (dm->sf) PetscCall(PetscSFSetFromOptions(dm->sf)); 9029566063dSJacob Faibussowitsch if (dm->sectionSF) PetscCall(PetscSFSetFromOptions(dm->sectionSF)); 903dd4c3f67SMatthew G. Knepley if (dm->coordinates[0].dm) PetscCall(DMSetFromOptions(dm->coordinates[0].dm)); 904d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)dm); 9059566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_preallocate_only", "only preallocate matrix, but do not set column indices", "DMSetMatrixPreallocateOnly", dm->prealloc_only, &dm->prealloc_only, NULL)); 9069566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_vec_type", "Vector type used for created vectors", "DMSetVecType", VecList, dm->vectype, typeName, 256, &flg)); 9071baa6e33SBarry Smith if (flg) PetscCall(DMSetVecType(dm, typeName)); 9089566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_mat_type", "Matrix type used for created matrices", "DMSetMatType", MatList, dm->mattype ? dm->mattype : typeName, typeName, sizeof(typeName), &flg)); 9091baa6e33SBarry Smith if (flg) PetscCall(DMSetMatType(dm, typeName)); 910863027abSJed Brown PetscCall(PetscOptionsEnum("-dm_blocking_type", "Topological point or field node blocking", "DMSetBlockingType", DMBlockingTypes, (PetscEnum)dm->blocking_type, (PetscEnum *)&dm->blocking_type, NULL)); 9119566063dSJacob Faibussowitsch PetscCall(PetscOptionsEnum("-dm_is_coloring_type", "Global or local coloring of Jacobian", "DMSetISColoringType", ISColoringTypes, (PetscEnum)dm->coloringtype, (PetscEnum *)&dm->coloringtype, NULL)); 9129566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-dm_bind_below", "Set the size threshold (in entries) below which the Vec is bound to the CPU", "VecBindToCPU", dm->bind_below, &dm->bind_below, &flg)); 913eb9d3e4dSMatthew G. Knepley PetscCall(PetscOptionsBool("-dm_ignore_perm_output", "Ignore the local section permutation on output", "DMGetOutputDM", dm->ignorePermOutput, &dm->ignorePermOutput, NULL)); 914dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setfromoptions, PetscOptionsObject); 915f9ba7244SBarry Smith /* process any options handlers added with PetscObjectAddOptionsHandler() */ 916dbbe0bcdSBarry Smith PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)dm, PetscOptionsObject)); 917d0609cedSBarry Smith PetscOptionsEnd(); 9183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 919d7bf68aeSBarry Smith } 920d7bf68aeSBarry Smith 921ffeef943SBarry Smith /*@ 922bb7acecfSBarry Smith DMViewFromOptions - View a `DM` in a particular way based on a request in the options database 923fe2efc57SMark 92420f4b53cSBarry Smith Collective 925fe2efc57SMark 926fe2efc57SMark Input Parameters: 927bb7acecfSBarry Smith + dm - the `DM` object 92820f4b53cSBarry Smith . obj - optional object that provides the prefix for the options database (if `NULL` then the prefix in obj is used) 92960225df5SJacob Faibussowitsch - name - option string that is used to activate viewing 930fe2efc57SMark 931fe2efc57SMark Level: intermediate 932bb7acecfSBarry Smith 933bb7acecfSBarry Smith Note: 934bb7acecfSBarry Smith See `PetscObjectViewFromOptions()` for a list of values that can be provided in the options database to determine how the `DM` is viewed 935bb7acecfSBarry Smith 93660225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `PetscObjectViewFromOptions()`, `DMCreate()` 937fe2efc57SMark @*/ 938d71ae5a4SJacob Faibussowitsch PetscErrorCode DMViewFromOptions(DM dm, PetscObject obj, const char name[]) 939d71ae5a4SJacob Faibussowitsch { 940fe2efc57SMark PetscFunctionBegin; 941fe2efc57SMark PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9429566063dSJacob Faibussowitsch PetscCall(PetscObjectViewFromOptions((PetscObject)dm, obj, name)); 9433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 944fe2efc57SMark } 945fe2efc57SMark 946ffeef943SBarry Smith /*@ 947bb7acecfSBarry Smith DMView - Views a `DM`. Depending on the `PetscViewer` and its `PetscViewerFormat` it may print some ASCII information about the `DM` to the screen or a file or 948bb7acecfSBarry Smith save the `DM` in a binary file to be loaded later or create a visualization of the `DM` 94947c6ae99SBarry Smith 95020f4b53cSBarry Smith Collective 95147c6ae99SBarry Smith 952d8d19677SJose E. Roman Input Parameters: 953bb7acecfSBarry Smith + dm - the `DM` object to view 95447c6ae99SBarry Smith - v - the viewer 95547c6ae99SBarry Smith 95620f4b53cSBarry Smith Level: beginner 95720f4b53cSBarry Smith 95873ff1848SBarry Smith Note: 959bb7acecfSBarry Smith Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` as the `PetscViewerFormat` one can save multiple `DMPLEX` 960bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 961bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 962cd7e8a5eSksagiyam 9631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewer`, `PetscViewerFormat`, `PetscViewerSetFormat()`, `DMDestroy()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMLoad()`, `PetscObjectSetName()` 96447c6ae99SBarry Smith @*/ 965d71ae5a4SJacob Faibussowitsch PetscErrorCode DMView(DM dm, PetscViewer v) 966d71ae5a4SJacob Faibussowitsch { 96732c0f0efSBarry Smith PetscBool isbinary; 96876a8abe0SBarry Smith PetscMPIInt size; 96976a8abe0SBarry Smith PetscViewerFormat format; 97047c6ae99SBarry Smith 97147c6ae99SBarry Smith PetscFunctionBegin; 972171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 97348a46eb9SPierre Jolivet if (!v) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &v)); 974b1b135c8SBarry Smith PetscValidHeaderSpecific(v, PETSC_VIEWER_CLASSID, 2); 97574903a4fSStefano Zampini /* Ideally, we would like to have this test on. 97674903a4fSStefano Zampini However, it currently breaks socket viz via GLVis. 97774903a4fSStefano Zampini During DMView(parallel_mesh,glvis_viewer), each 97874903a4fSStefano Zampini process opens a sequential ASCII socket to visualize 97974903a4fSStefano Zampini the local mesh, and PetscObjectView(dm,local_socket) 98074903a4fSStefano Zampini is internally called inside VecView_GLVis, incurring 98174903a4fSStefano Zampini in an error here */ 98274903a4fSStefano Zampini /* PetscCheckSameComm(dm,1,v,2); */ 9839566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckWritable(v)); 984b1b135c8SBarry Smith 9859566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(v, &format)); 9869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 9873ba16761SJacob Faibussowitsch if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(PETSC_SUCCESS); 9889566063dSJacob Faibussowitsch PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)dm, v)); 9899566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)v, PETSCVIEWERBINARY, &isbinary)); 99032c0f0efSBarry Smith if (isbinary) { 99155849f57SBarry Smith PetscInt classid = DM_FILE_CLASSID; 99232c0f0efSBarry Smith char type[256]; 99332c0f0efSBarry Smith 9949566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, &classid, 1, PETSC_INT)); 995c6a7a370SJeremy L Thompson PetscCall(PetscStrncpy(type, ((PetscObject)dm)->type_name, sizeof(type))); 9969566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, type, 256, PETSC_CHAR)); 99732c0f0efSBarry Smith } 998dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, view, v); 9993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 100047c6ae99SBarry Smith } 100147c6ae99SBarry Smith 100247c6ae99SBarry Smith /*@ 1003bb7acecfSBarry Smith DMCreateGlobalVector - Creates a global vector from a `DM` object. A global vector is a parallel vector that has no duplicate values shared between MPI ranks, 1004bb7acecfSBarry Smith that is it has no ghost locations. 100547c6ae99SBarry Smith 100620f4b53cSBarry Smith Collective 100747c6ae99SBarry Smith 100847c6ae99SBarry Smith Input Parameter: 1009bb7acecfSBarry Smith . dm - the `DM` object 101047c6ae99SBarry Smith 101147c6ae99SBarry Smith Output Parameter: 101247c6ae99SBarry Smith . vec - the global vector 101347c6ae99SBarry Smith 1014073dac72SJed Brown Level: beginner 101547c6ae99SBarry Smith 10161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1017bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 101847c6ae99SBarry Smith @*/ 1019d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateGlobalVector(DM dm, Vec *vec) 1020d71ae5a4SJacob Faibussowitsch { 102147c6ae99SBarry Smith PetscFunctionBegin; 1022171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10234f572ea9SToby Isaac PetscAssertPointer(vec, 2); 1024dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createglobalvector, vec); 102576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1026c6b011d8SStefano Zampini DM vdm; 1027c6b011d8SStefano Zampini 10289566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10297a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1030c6b011d8SStefano Zampini } 10313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 103247c6ae99SBarry Smith } 103347c6ae99SBarry Smith 103447c6ae99SBarry Smith /*@ 1035bb7acecfSBarry Smith DMCreateLocalVector - Creates a local vector from a `DM` object. 103647c6ae99SBarry Smith 103747c6ae99SBarry Smith Not Collective 103847c6ae99SBarry Smith 103947c6ae99SBarry Smith Input Parameter: 1040bb7acecfSBarry Smith . dm - the `DM` object 104147c6ae99SBarry Smith 104247c6ae99SBarry Smith Output Parameter: 104347c6ae99SBarry Smith . vec - the local vector 104447c6ae99SBarry Smith 1045073dac72SJed Brown Level: beginner 104647c6ae99SBarry Smith 104720f4b53cSBarry Smith Note: 1048bb7acecfSBarry Smith A local vector usually has ghost locations that contain values that are owned by different MPI ranks. A global vector has no ghost locations. 1049bb7acecfSBarry Smith 10501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 1051bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 105247c6ae99SBarry Smith @*/ 1053d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLocalVector(DM dm, Vec *vec) 1054d71ae5a4SJacob Faibussowitsch { 105547c6ae99SBarry Smith PetscFunctionBegin; 1056171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10574f572ea9SToby Isaac PetscAssertPointer(vec, 2); 1058dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalvector, vec); 105976bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1060c6b011d8SStefano Zampini DM vdm; 1061c6b011d8SStefano Zampini 10629566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10637a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_LIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1064c6b011d8SStefano Zampini } 10653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 106647c6ae99SBarry Smith } 106747c6ae99SBarry Smith 10681411c6eeSJed Brown /*@ 1069bb7acecfSBarry Smith DMGetLocalToGlobalMapping - Accesses the local-to-global mapping in a `DM`. 10701411c6eeSJed Brown 107120f4b53cSBarry Smith Collective 10721411c6eeSJed Brown 10731411c6eeSJed Brown Input Parameter: 1074bb7acecfSBarry Smith . dm - the `DM` that provides the mapping 10751411c6eeSJed Brown 10761411c6eeSJed Brown Output Parameter: 10771411c6eeSJed Brown . ltog - the mapping 10781411c6eeSJed Brown 1079bb7acecfSBarry Smith Level: advanced 10801411c6eeSJed Brown 10811411c6eeSJed Brown Notes: 1082bb7acecfSBarry Smith The global to local mapping allows one to set values into the global vector or matrix using `VecSetValuesLocal()` and `MatSetValuesLocal()` 10831411c6eeSJed Brown 1084bb7acecfSBarry Smith Vectors obtained with `DMCreateGlobalVector()` and matrices obtained with `DMCreateMatrix()` already contain the global mapping so you do 1085bb7acecfSBarry Smith need to use this function with those objects. 1086bb7acecfSBarry Smith 1087bb7acecfSBarry Smith This mapping can then be used by `VecSetLocalToGlobalMapping()` or `MatSetLocalToGlobalMapping()`. 1088bb7acecfSBarry Smith 108960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `VecSetLocalToGlobalMapping()`, `MatSetLocalToGlobalMapping()`, 1090bb7acecfSBarry Smith `DMCreateMatrix()` 10911411c6eeSJed Brown @*/ 1092d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalToGlobalMapping(DM dm, ISLocalToGlobalMapping *ltog) 1093d71ae5a4SJacob Faibussowitsch { 10940be3e97aSMatthew G. Knepley PetscInt bs = -1, bsLocal[2], bsMinMax[2]; 10951411c6eeSJed Brown 10961411c6eeSJed Brown PetscFunctionBegin; 10971411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10984f572ea9SToby Isaac PetscAssertPointer(ltog, 2); 10991411c6eeSJed Brown if (!dm->ltogmap) { 110037d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 110137d0c07bSMatthew G Knepley 11029566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 110337d0c07bSMatthew G Knepley if (section) { 1104a974ec88SMatthew G. Knepley const PetscInt *cdofs; 110537d0c07bSMatthew G Knepley PetscInt *ltog; 1106ccf3bd66SMatthew G. Knepley PetscInt pStart, pEnd, n, p, k, l; 110737d0c07bSMatthew G Knepley 11089566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 11099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 11109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(section, &n)); 11119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, <og)); /* We want the local+overlap size */ 111237d0c07bSMatthew G Knepley for (p = pStart, l = 0; p < pEnd; ++p) { 1113e6befd46SJed Brown PetscInt bdof, cdof, dof, off, c, cind; 111437d0c07bSMatthew G Knepley 111537d0c07bSMatthew G Knepley /* Should probably use constrained dofs */ 11169566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, p, &dof)); 11179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(section, p, &cdof)); 11189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(section, p, &cdofs)); 11199566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &off)); 11201a7dc684SMatthew G. Knepley /* If you have dofs, and constraints, and they are unequal, we set the blocksize to 1 */ 11211a7dc684SMatthew G. Knepley bdof = cdof && (dof - cdof) ? 1 : dof; 1122ad540459SPierre Jolivet if (dof) bs = bs < 0 ? bdof : PetscGCD(bs, bdof); 11235227eafbSStefano Zampini 1124e6befd46SJed Brown for (c = 0, cind = 0; c < dof; ++c, ++l) { 11255227eafbSStefano Zampini if (cind < cdof && c == cdofs[cind]) { 1126e6befd46SJed Brown ltog[l] = off < 0 ? off - c : -(off + c + 1); 1127e6befd46SJed Brown cind++; 1128e6befd46SJed Brown } else { 11295227eafbSStefano Zampini ltog[l] = (off < 0 ? -(off + 1) : off) + c - cind; 1130e6befd46SJed Brown } 113137d0c07bSMatthew G Knepley } 113237d0c07bSMatthew G Knepley } 1133bff27382SMatthew G. Knepley /* Must have same blocksize on all procs (some might have no points) */ 11349371c9d4SSatish Balay bsLocal[0] = bs < 0 ? PETSC_MAX_INT : bs; 11359371c9d4SSatish Balay bsLocal[1] = bs; 11369566063dSJacob Faibussowitsch PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)dm), bsLocal, bsMinMax)); 11379371c9d4SSatish Balay if (bsMinMax[0] != bsMinMax[1]) { 11389371c9d4SSatish Balay bs = 1; 11399371c9d4SSatish Balay } else { 11409371c9d4SSatish Balay bs = bsMinMax[0]; 11419371c9d4SSatish Balay } 11427591dbb2SMatthew G. Knepley bs = bs < 0 ? 1 : bs; 11437591dbb2SMatthew G. Knepley /* Must reduce indices by blocksize */ 1144ccf3bd66SMatthew G. Knepley if (bs > 1) { 1145ca469d19SJed Brown for (l = 0, k = 0; l < n; l += bs, ++k) { 1146ca469d19SJed Brown // Integer division of negative values truncates toward zero(!), not toward negative infinity 1147ca469d19SJed Brown ltog[k] = ltog[l] >= 0 ? ltog[l] / bs : -(-(ltog[l] + 1) / bs + 1); 1148ca469d19SJed Brown } 1149ccf3bd66SMatthew G. Knepley n /= bs; 1150ccf3bd66SMatthew G. Knepley } 11519566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm), bs, n, ltog, PETSC_OWN_POINTER, &dm->ltogmap)); 1152dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, getlocaltoglobalmapping); 115337d0c07bSMatthew G Knepley } 11541411c6eeSJed Brown *ltog = dm->ltogmap; 11553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11561411c6eeSJed Brown } 11571411c6eeSJed Brown 11581411c6eeSJed Brown /*@ 1159bb7acecfSBarry Smith DMGetBlockSize - Gets the inherent block size associated with a `DM` 11601411c6eeSJed Brown 11611411c6eeSJed Brown Not Collective 11621411c6eeSJed Brown 11631411c6eeSJed Brown Input Parameter: 1164bb7acecfSBarry Smith . dm - the `DM` with block structure 11651411c6eeSJed Brown 11661411c6eeSJed Brown Output Parameter: 11671411c6eeSJed Brown . bs - the block size, 1 implies no exploitable block structure 11681411c6eeSJed Brown 11691411c6eeSJed Brown Level: intermediate 11701411c6eeSJed Brown 117173ff1848SBarry Smith Notes: 1172bb7acecfSBarry Smith This might be the number of degrees of freedom at each grid point for a structured grid. 1173bb7acecfSBarry Smith 1174bb7acecfSBarry Smith Complex `DM` that represent multiphysics or staggered grids or mixed-methods do not generally have a single inherent block size, but 1175bb7acecfSBarry Smith rather different locations in the vectors may have a different block size. 1176bb7acecfSBarry Smith 11771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISCreateBlock()`, `VecSetBlockSize()`, `MatSetBlockSize()`, `DMGetLocalToGlobalMapping()` 11781411c6eeSJed Brown @*/ 1179d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBlockSize(DM dm, PetscInt *bs) 1180d71ae5a4SJacob Faibussowitsch { 11811411c6eeSJed Brown PetscFunctionBegin; 11821411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11834f572ea9SToby Isaac PetscAssertPointer(bs, 2); 11847a8be351SBarry Smith PetscCheck(dm->bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM does not have enough information to provide a block size yet"); 11851411c6eeSJed Brown *bs = dm->bs; 11863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11871411c6eeSJed Brown } 11881411c6eeSJed Brown 1189ffeef943SBarry Smith /*@ 1190bb7acecfSBarry Smith DMCreateInterpolation - Gets the interpolation matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1191bb7acecfSBarry Smith `DMCreateGlobalVector()` on the coarse `DM` to similar vectors on the fine grid `DM`. 119247c6ae99SBarry Smith 119320f4b53cSBarry Smith Collective 119447c6ae99SBarry Smith 1195d8d19677SJose E. Roman Input Parameters: 1196bb7acecfSBarry Smith + dmc - the `DM` object 1197bb7acecfSBarry Smith - dmf - the second, finer `DM` object 119847c6ae99SBarry Smith 1199d8d19677SJose E. Roman Output Parameters: 120047c6ae99SBarry Smith + mat - the interpolation 1201b6971eaeSBarry Smith - vec - the scaling (optional, pass `NULL` if not needed), see `DMCreateInterpolationScale()` 120247c6ae99SBarry Smith 120347c6ae99SBarry Smith Level: developer 120447c6ae99SBarry Smith 120595452b02SPatrick Sanan Notes: 1206bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1207bb7acecfSBarry Smith DMCoarsen(). The coordinates set into the `DMDA` are completely ignored in computing the interpolation. 1208d52bd9f3SBarry Smith 1209bb7acecfSBarry Smith For `DMDA` objects you can use this interpolation (more precisely the interpolation from the `DMGetCoordinateDM()`) to interpolate the mesh coordinate 1210bb7acecfSBarry Smith vectors EXCEPT in the periodic case where it does not make sense since the coordinate vectors are not periodic. 121185afcc9aSBarry Smith 12121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolationScale()` 121347c6ae99SBarry Smith @*/ 1214d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolation(DM dmc, DM dmf, Mat *mat, Vec *vec) 1215d71ae5a4SJacob Faibussowitsch { 121647c6ae99SBarry Smith PetscFunctionBegin; 1217a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1218a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 12194f572ea9SToby Isaac PetscAssertPointer(mat, 3); 12209566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInterpolation, dmc, dmf, 0, 0)); 1221dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createinterpolation, dmf, mat, vec); 12229566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInterpolation, dmc, dmf, 0, 0)); 12233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 122447c6ae99SBarry Smith } 122547c6ae99SBarry Smith 12263ad4599aSBarry Smith /*@ 1227a4e35b19SJacob Faibussowitsch DMCreateInterpolationScale - Forms L = 1/(R*1) where 1 is the vector of all ones, and R is 1228a4e35b19SJacob Faibussowitsch the transpose of the interpolation between the `DM`. 12292ed6491fSPatrick Sanan 12302ed6491fSPatrick Sanan Input Parameters: 1231bb7acecfSBarry Smith + dac - `DM` that defines a coarse mesh 1232bb7acecfSBarry Smith . daf - `DM` that defines a fine mesh 12332ed6491fSPatrick Sanan - mat - the restriction (or interpolation operator) from fine to coarse 12342ed6491fSPatrick Sanan 12352ed6491fSPatrick Sanan Output Parameter: 12362ed6491fSPatrick Sanan . scale - the scaled vector 12372ed6491fSPatrick Sanan 1238bb7acecfSBarry Smith Level: advanced 12392ed6491fSPatrick Sanan 124073ff1848SBarry Smith Note: 1241a4e35b19SJacob Faibussowitsch xcoarse = diag(L)*R*xfine preserves scale and is thus suitable for state (versus residual) 1242a4e35b19SJacob Faibussowitsch restriction. In other words xcoarse is the coarse representation of xfine. 1243a4e35b19SJacob Faibussowitsch 124473ff1848SBarry Smith Developer Note: 1245bb7acecfSBarry Smith If the fine-scale `DMDA` has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()` 1246e9c74fd6SRichard Tran Mills on the restriction/interpolation operator to set the bindingpropagates flag to true. 1247e9c74fd6SRichard Tran Mills 124860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatRestrict()`, `MatInterpolate()`, `DMCreateInterpolation()`, `DMCreateRestriction()`, `DMCreateGlobalVector()` 12492ed6491fSPatrick Sanan @*/ 1250d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolationScale(DM dac, DM daf, Mat mat, Vec *scale) 1251d71ae5a4SJacob Faibussowitsch { 12522ed6491fSPatrick Sanan Vec fine; 12532ed6491fSPatrick Sanan PetscScalar one = 1.0; 12549704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 1255e9c74fd6SRichard Tran Mills PetscBool bindingpropagates, isbound; 12569704db99SRichard Tran Mills #endif 12572ed6491fSPatrick Sanan 12582ed6491fSPatrick Sanan PetscFunctionBegin; 12599566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(daf, &fine)); 12609566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(dac, scale)); 12619566063dSJacob Faibussowitsch PetscCall(VecSet(fine, one)); 12629704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 12639704db99SRichard Tran Mills /* If the 'fine' Vec is bound to the CPU, it makes sense to bind 'mat' as well. 12649704db99SRichard Tran Mills * Note that we only do this for the CUDA case, right now, but if we add support for MatMultTranspose() via ViennaCL, 12659704db99SRichard Tran Mills * we'll need to do it for that case, too.*/ 12669566063dSJacob Faibussowitsch PetscCall(VecGetBindingPropagates(fine, &bindingpropagates)); 1267e9c74fd6SRichard Tran Mills if (bindingpropagates) { 12689566063dSJacob Faibussowitsch PetscCall(MatSetBindingPropagates(mat, PETSC_TRUE)); 12699566063dSJacob Faibussowitsch PetscCall(VecBoundToCPU(fine, &isbound)); 12709566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mat, isbound)); 127183aa49f4SRichard Tran Mills } 12729704db99SRichard Tran Mills #endif 12739566063dSJacob Faibussowitsch PetscCall(MatRestrict(mat, fine, *scale)); 12749566063dSJacob Faibussowitsch PetscCall(VecDestroy(&fine)); 12759566063dSJacob Faibussowitsch PetscCall(VecReciprocal(*scale)); 12763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12772ed6491fSPatrick Sanan } 12782ed6491fSPatrick Sanan 12792ed6491fSPatrick Sanan /*@ 1280bb7acecfSBarry Smith DMCreateRestriction - Gets restriction matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1281bb7acecfSBarry Smith `DMCreateGlobalVector()` on the fine `DM` to similar vectors on the coarse grid `DM`. 12823ad4599aSBarry Smith 128320f4b53cSBarry Smith Collective 12843ad4599aSBarry Smith 1285d8d19677SJose E. Roman Input Parameters: 1286bb7acecfSBarry Smith + dmc - the `DM` object 1287bb7acecfSBarry Smith - dmf - the second, finer `DM` object 12883ad4599aSBarry Smith 12893ad4599aSBarry Smith Output Parameter: 12903ad4599aSBarry Smith . mat - the restriction 12913ad4599aSBarry Smith 12923ad4599aSBarry Smith Level: developer 12933ad4599aSBarry Smith 1294bb7acecfSBarry Smith Note: 1295bb7acecfSBarry Smith This only works for `DMSTAG`. For many situations either the transpose of the operator obtained with `DMCreateInterpolation()` or that 1296bb7acecfSBarry Smith matrix multiplied by the vector obtained with `DMCreateInterpolationScale()` provides the desired object. 12973ad4599aSBarry Smith 12981cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRestrict()`, `DMInterpolate()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateInterpolation()` 12993ad4599aSBarry Smith @*/ 1300d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateRestriction(DM dmc, DM dmf, Mat *mat) 1301d71ae5a4SJacob Faibussowitsch { 13023ad4599aSBarry Smith PetscFunctionBegin; 1303a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1304a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 13054f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13069566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateRestriction, dmc, dmf, 0, 0)); 1307dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createrestriction, dmf, mat); 13089566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateRestriction, dmc, dmf, 0, 0)); 13093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13103ad4599aSBarry Smith } 13113ad4599aSBarry Smith 131247c6ae99SBarry Smith /*@ 1313a4e35b19SJacob Faibussowitsch DMCreateInjection - Gets injection matrix between two `DM` objects. 131447c6ae99SBarry Smith 131520f4b53cSBarry Smith Collective 131647c6ae99SBarry Smith 1317d8d19677SJose E. Roman Input Parameters: 1318bb7acecfSBarry Smith + dac - the `DM` object 1319bb7acecfSBarry Smith - daf - the second, finer `DM` object 132047c6ae99SBarry Smith 132147c6ae99SBarry Smith Output Parameter: 13226dbf9973SLawrence Mitchell . mat - the injection 132347c6ae99SBarry Smith 132447c6ae99SBarry Smith Level: developer 132547c6ae99SBarry Smith 1326a4e35b19SJacob Faibussowitsch Notes: 1327a4e35b19SJacob Faibussowitsch This is an operator that applied to a vector obtained with `DMCreateGlobalVector()` on the 1328a4e35b19SJacob Faibussowitsch fine grid maps the values to a vector on the vector on the coarse `DM` by simply selecting 1329a4e35b19SJacob Faibussowitsch the values on the coarse grid points. This compares to the operator obtained by 1330a4e35b19SJacob Faibussowitsch `DMCreateRestriction()` or the transpose of the operator obtained by 1331a4e35b19SJacob Faibussowitsch `DMCreateInterpolation()` that uses a "local weighted average" of the values around the 1332a4e35b19SJacob Faibussowitsch coarse grid point as the coarse grid value. 1333a4e35b19SJacob Faibussowitsch 1334bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1335bb7acecfSBarry Smith `DMCoarsen()`. The coordinates set into the `DMDA` are completely ignored in computing the injection. 133685afcc9aSBarry Smith 13371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateInterpolation()`, 1338bb7acecfSBarry Smith `DMCreateRestriction()`, `MatRestrict()`, `MatInterpolate()` 133947c6ae99SBarry Smith @*/ 1340d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInjection(DM dac, DM daf, Mat *mat) 1341d71ae5a4SJacob Faibussowitsch { 134247c6ae99SBarry Smith PetscFunctionBegin; 1343a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dac, DM_CLASSID, 1); 1344a5bc1bf3SBarry Smith PetscValidHeaderSpecific(daf, DM_CLASSID, 2); 13454f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13469566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInjection, dac, daf, 0, 0)); 1347dbbe0bcdSBarry Smith PetscUseTypeMethod(dac, createinjection, daf, mat); 13489566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInjection, dac, daf, 0, 0)); 13493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 135047c6ae99SBarry Smith } 135147c6ae99SBarry Smith 1352b412c318SBarry Smith /*@ 1353bb7acecfSBarry Smith DMCreateMassMatrix - Gets the mass matrix between two `DM` objects, M_ij = \int \phi_i \psi_j where the \phi are Galerkin basis functions for a 1354bb7acecfSBarry Smith a Galerkin finite element model on the `DM` 1355bd041c0cSMatthew G. Knepley 135620f4b53cSBarry Smith Collective 1357bd041c0cSMatthew G. Knepley 1358d8d19677SJose E. Roman Input Parameters: 1359bb7acecfSBarry Smith + dmc - the target `DM` object 1360*8c1c0954SStefano Zampini - dmf - the source `DM` object, can be `NULL` 1361bd041c0cSMatthew G. Knepley 1362bd041c0cSMatthew G. Knepley Output Parameter: 1363b4937a87SMatthew G. Knepley . mat - the mass matrix 1364bd041c0cSMatthew G. Knepley 1365bd041c0cSMatthew G. Knepley Level: developer 1366bd041c0cSMatthew G. Knepley 1367bb7acecfSBarry Smith Notes: 1368bb7acecfSBarry Smith For `DMPLEX` the finite element model for the `DM` must have been already provided. 1369bb7acecfSBarry Smith 1370*8c1c0954SStefano Zampini if `dmc` is `dmf` or `NULL`, then x^t M x is an approximation to the L2 norm of the vector x which is obtained by `DMCreateGlobalVector()` 1371bb7acecfSBarry Smith 137242747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrixLumped()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1373bd041c0cSMatthew G. Knepley @*/ 1374d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrix(DM dmc, DM dmf, Mat *mat) 1375d71ae5a4SJacob Faibussowitsch { 1376bd041c0cSMatthew G. Knepley PetscFunctionBegin; 1377b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1378*8c1c0954SStefano Zampini if (!dmf) dmf = dmc; 1379b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 13804f572ea9SToby Isaac PetscAssertPointer(mat, 3); 1381*8c1c0954SStefano Zampini PetscCall(PetscLogEventBegin(DM_CreateMassMatrix, dmc, dmf, 0, 0)); 1382dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createmassmatrix, dmf, mat); 1383*8c1c0954SStefano Zampini PetscCall(PetscLogEventEnd(DM_CreateMassMatrix, dmc, dmf, 0, 0)); 13843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1385b4937a87SMatthew G. Knepley } 1386b4937a87SMatthew G. Knepley 1387b4937a87SMatthew G. Knepley /*@ 1388bb7acecfSBarry Smith DMCreateMassMatrixLumped - Gets the lumped mass matrix for a given `DM` 1389b4937a87SMatthew G. Knepley 139020f4b53cSBarry Smith Collective 1391b4937a87SMatthew G. Knepley 1392b4937a87SMatthew G. Knepley Input Parameter: 1393bb7acecfSBarry Smith . dm - the `DM` object 1394b4937a87SMatthew G. Knepley 1395b4937a87SMatthew G. Knepley Output Parameter: 1396bb7acecfSBarry Smith . lm - the lumped mass matrix, which is a diagonal matrix, represented as a vector 1397b4937a87SMatthew G. Knepley 1398b4937a87SMatthew G. Knepley Level: developer 1399b4937a87SMatthew G. Knepley 1400bb7acecfSBarry Smith Note: 1401bb7acecfSBarry Smith See `DMCreateMassMatrix()` for how to create the non-lumped version of the mass matrix. 1402bb7acecfSBarry Smith 140360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrix()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1404b4937a87SMatthew G. Knepley @*/ 1405d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrixLumped(DM dm, Vec *lm) 1406d71ae5a4SJacob Faibussowitsch { 1407b4937a87SMatthew G. Knepley PetscFunctionBegin; 1408b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14094f572ea9SToby Isaac PetscAssertPointer(lm, 2); 1410dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createmassmatrixlumped, lm); 14113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1412bd041c0cSMatthew G. Knepley } 1413bd041c0cSMatthew G. Knepley 1414bd041c0cSMatthew G. Knepley /*@ 1415bb7acecfSBarry Smith DMCreateColoring - Gets coloring of a graph associated with the `DM`. Often the graph represents the operator matrix associated with the discretization 1416bb7acecfSBarry Smith of a PDE on the `DM`. 141747c6ae99SBarry Smith 141820f4b53cSBarry Smith Collective 141947c6ae99SBarry Smith 1420d8d19677SJose E. Roman Input Parameters: 1421bb7acecfSBarry Smith + dm - the `DM` object 1422bb7acecfSBarry Smith - ctype - `IS_COLORING_LOCAL` or `IS_COLORING_GLOBAL` 142347c6ae99SBarry Smith 142447c6ae99SBarry Smith Output Parameter: 142547c6ae99SBarry Smith . coloring - the coloring 142647c6ae99SBarry Smith 14271bf8429eSBarry Smith Level: developer 14281bf8429eSBarry Smith 1429ec5066bdSBarry Smith Notes: 1430bb7acecfSBarry Smith Coloring of matrices can also be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 1431bb7acecfSBarry Smith matrix comes from (what this function provides). In general using the mesh produces a more optimal coloring (fewer colors). 1432ec5066bdSBarry Smith 1433bb7acecfSBarry Smith This produces a coloring with the distance of 2, see `MatSetColoringDistance()` which can be used for efficiently computing Jacobians with `MatFDColoringCreate()` 14341bf8429eSBarry Smith For `DMDA` in three dimensions with periodic boundary conditions the number of grid points in each dimension must be divisible by 2*stencil_width + 1, 14351bf8429eSBarry Smith otherwise an error will be generated. 1436ec5066bdSBarry Smith 14371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISColoring`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatType()`, `MatColoring`, `MatFDColoringCreate()` 1438aab9d709SJed Brown @*/ 1439d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateColoring(DM dm, ISColoringType ctype, ISColoring *coloring) 1440d71ae5a4SJacob Faibussowitsch { 144147c6ae99SBarry Smith PetscFunctionBegin; 1442171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14434f572ea9SToby Isaac PetscAssertPointer(coloring, 3); 1444dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getcoloring, ctype, coloring); 14453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 144647c6ae99SBarry Smith } 144747c6ae99SBarry Smith 1448b412c318SBarry Smith /*@ 1449bb7acecfSBarry Smith DMCreateMatrix - Gets an empty matrix for a `DM` that is most commonly used to store the Jacobian of a discrete PDE operator. 145047c6ae99SBarry Smith 145120f4b53cSBarry Smith Collective 145247c6ae99SBarry Smith 145347c6ae99SBarry Smith Input Parameter: 1454bb7acecfSBarry Smith . dm - the `DM` object 145547c6ae99SBarry Smith 145647c6ae99SBarry Smith Output Parameter: 145747c6ae99SBarry Smith . mat - the empty Jacobian 145847c6ae99SBarry Smith 145920f4b53cSBarry Smith Options Database Key: 1460bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 1461f27dd7c6SMatthew G. Knepley 146220f4b53cSBarry Smith Level: beginner 146320f4b53cSBarry Smith 146495452b02SPatrick Sanan Notes: 146595452b02SPatrick Sanan This properly preallocates the number of nonzeros in the sparse matrix so you 146694013140SBarry Smith do not need to do it yourself. 146794013140SBarry Smith 146894013140SBarry Smith By default it also sets the nonzero structure and puts in the zero entries. To prevent setting 1469bb7acecfSBarry Smith the nonzero pattern call `DMSetMatrixPreallocateOnly()` 147094013140SBarry Smith 1471bb7acecfSBarry Smith For `DMDA`, when you call `MatView()` on this matrix it is displayed using the global natural ordering, NOT in the ordering used 147294013140SBarry Smith internally by PETSc. 147394013140SBarry Smith 1474bb7acecfSBarry Smith For `DMDA`, in general it is easiest to use `MatSetValuesStencil()` or `MatSetValuesLocal()` to put values into the matrix because 1475bb7acecfSBarry Smith `MatSetValues()` requires the indices for the global numbering for the `DMDA` which is complic`ated to compute 147694013140SBarry Smith 14771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMSetMatType()`, `DMCreateMassMatrix()` 1478aab9d709SJed Brown @*/ 1479d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMatrix(DM dm, Mat *mat) 1480d71ae5a4SJacob Faibussowitsch { 148147c6ae99SBarry Smith PetscFunctionBegin; 1482171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14834f572ea9SToby Isaac PetscAssertPointer(mat, 2); 14849566063dSJacob Faibussowitsch PetscCall(MatInitializePackage()); 14859566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateMatrix, 0, 0, 0, 0)); 1486dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, creatematrix, mat); 148776bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1488c6b011d8SStefano Zampini DM mdm; 1489c6b011d8SStefano Zampini 14909566063dSJacob Faibussowitsch PetscCall(MatGetDM(*mat, &mdm)); 14917a8be351SBarry Smith PetscCheck(mdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the matrix", ((PetscObject)dm)->type_name); 1492c6b011d8SStefano Zampini } 1493e571a35bSMatthew G. Knepley /* Handle nullspace and near nullspace */ 1494e5e52638SMatthew G. Knepley if (dm->Nf) { 1495e571a35bSMatthew G. Knepley MatNullSpace nullSpace; 1496649ef022SMatthew Knepley PetscInt Nf, f; 1497e571a35bSMatthew G. Knepley 14989566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 1499649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1500649ef022SMatthew Knepley if (dm->nullspaceConstructors[f]) { 15019566063dSJacob Faibussowitsch PetscCall((*dm->nullspaceConstructors[f])(dm, f, f, &nullSpace)); 15029566063dSJacob Faibussowitsch PetscCall(MatSetNullSpace(*mat, nullSpace)); 15039566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1504649ef022SMatthew Knepley break; 1505e571a35bSMatthew G. Knepley } 1506649ef022SMatthew Knepley } 1507649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1508649ef022SMatthew Knepley if (dm->nearnullspaceConstructors[f]) { 15099566063dSJacob Faibussowitsch PetscCall((*dm->nearnullspaceConstructors[f])(dm, f, f, &nullSpace)); 15109566063dSJacob Faibussowitsch PetscCall(MatSetNearNullSpace(*mat, nullSpace)); 15119566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1512e571a35bSMatthew G. Knepley } 1513e571a35bSMatthew G. Knepley } 1514e571a35bSMatthew G. Knepley } 15159566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateMatrix, 0, 0, 0, 0)); 15163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 151747c6ae99SBarry Smith } 151847c6ae99SBarry Smith 1519732e2eb9SMatthew G Knepley /*@ 1520a4e35b19SJacob Faibussowitsch DMSetMatrixPreallocateSkip - When `DMCreateMatrix()` is called the matrix sizes and 1521a4e35b19SJacob Faibussowitsch `ISLocalToGlobalMapping` will be properly set, but the data structures to store values in the 1522a4e35b19SJacob Faibussowitsch matrices will not be preallocated. 1523aa0f6e3cSJed Brown 152420f4b53cSBarry Smith Logically Collective 1525aa0f6e3cSJed Brown 1526aa0f6e3cSJed Brown Input Parameters: 1527bb7acecfSBarry Smith + dm - the `DM` 1528bb7acecfSBarry Smith - skip - `PETSC_TRUE` to skip preallocation 1529aa0f6e3cSJed Brown 1530aa0f6e3cSJed Brown Level: developer 1531aa0f6e3cSJed Brown 153273ff1848SBarry Smith Note: 1533a4e35b19SJacob Faibussowitsch This is most useful to reduce initialization costs when `MatSetPreallocationCOO()` and 1534a4e35b19SJacob Faibussowitsch `MatSetValuesCOO()` will be used. 1535a4e35b19SJacob Faibussowitsch 15361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateOnly()` 1537aa0f6e3cSJed Brown @*/ 1538d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateSkip(DM dm, PetscBool skip) 1539d71ae5a4SJacob Faibussowitsch { 1540aa0f6e3cSJed Brown PetscFunctionBegin; 1541aa0f6e3cSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1542aa0f6e3cSJed Brown dm->prealloc_skip = skip; 15433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1544aa0f6e3cSJed Brown } 1545aa0f6e3cSJed Brown 1546aa0f6e3cSJed Brown /*@ 1547bb7acecfSBarry Smith DMSetMatrixPreallocateOnly - When `DMCreateMatrix()` is called the matrix will be properly 1548732e2eb9SMatthew G Knepley preallocated but the nonzero structure and zero values will not be set. 1549732e2eb9SMatthew G Knepley 155020f4b53cSBarry Smith Logically Collective 1551732e2eb9SMatthew G Knepley 1552d8d19677SJose E. Roman Input Parameters: 1553bb7acecfSBarry Smith + dm - the `DM` 1554bb7acecfSBarry Smith - only - `PETSC_TRUE` if only want preallocation 1555732e2eb9SMatthew G Knepley 155620f4b53cSBarry Smith Options Database Key: 1557bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()`, `DMCreateMassMatrix()`, but do not fill it with zeros 1558f27dd7c6SMatthew G. Knepley 155920f4b53cSBarry Smith Level: developer 156020f4b53cSBarry Smith 15611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateSkip()` 1562732e2eb9SMatthew G Knepley @*/ 1563d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateOnly(DM dm, PetscBool only) 1564d71ae5a4SJacob Faibussowitsch { 1565732e2eb9SMatthew G Knepley PetscFunctionBegin; 1566732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1567732e2eb9SMatthew G Knepley dm->prealloc_only = only; 15683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1569732e2eb9SMatthew G Knepley } 1570732e2eb9SMatthew G Knepley 1571b06ff27eSHong Zhang /*@ 1572bb7acecfSBarry Smith DMSetMatrixStructureOnly - When `DMCreateMatrix()` is called, the matrix structure will be created 1573bb7acecfSBarry Smith but the array for numerical values will not be allocated. 1574b06ff27eSHong Zhang 157520f4b53cSBarry Smith Logically Collective 1576b06ff27eSHong Zhang 1577d8d19677SJose E. Roman Input Parameters: 1578bb7acecfSBarry Smith + dm - the `DM` 1579da81f932SPierre Jolivet - only - `PETSC_TRUE` if you only want matrix structure 1580b06ff27eSHong Zhang 1581b06ff27eSHong Zhang Level: developer 1582bb7acecfSBarry Smith 15831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMSetMatrixPreallocateSkip()` 1584b06ff27eSHong Zhang @*/ 1585d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixStructureOnly(DM dm, PetscBool only) 1586d71ae5a4SJacob Faibussowitsch { 1587b06ff27eSHong Zhang PetscFunctionBegin; 1588b06ff27eSHong Zhang PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1589b06ff27eSHong Zhang dm->structure_only = only; 15903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1591b06ff27eSHong Zhang } 1592b06ff27eSHong Zhang 1593863027abSJed Brown /*@ 1594863027abSJed Brown DMSetBlockingType - set the blocking granularity to be used for variable block size `DMCreateMatrix()` is called 1595863027abSJed Brown 159620f4b53cSBarry Smith Logically Collective 1597863027abSJed Brown 1598863027abSJed Brown Input Parameters: 1599863027abSJed Brown + dm - the `DM` 1600863027abSJed Brown - btype - block by topological point or field node 1601863027abSJed Brown 160220f4b53cSBarry Smith Options Database Key: 16030e762ea3SJed Brown . -dm_blocking_type [topological_point, field_node] - use topological point blocking or field node blocking 1604863027abSJed Brown 160520f4b53cSBarry Smith Level: advanced 160620f4b53cSBarry Smith 16071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()` 1608863027abSJed Brown @*/ 1609863027abSJed Brown PetscErrorCode DMSetBlockingType(DM dm, DMBlockingType btype) 1610863027abSJed Brown { 1611863027abSJed Brown PetscFunctionBegin; 1612863027abSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1613863027abSJed Brown dm->blocking_type = btype; 16143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1615863027abSJed Brown } 1616863027abSJed Brown 1617863027abSJed Brown /*@ 1618863027abSJed Brown DMGetBlockingType - get the blocking granularity to be used for variable block size `DMCreateMatrix()` is called 1619863027abSJed Brown 1620863027abSJed Brown Not Collective 1621863027abSJed Brown 16222fe279fdSBarry Smith Input Parameter: 1623863027abSJed Brown . dm - the `DM` 1624863027abSJed Brown 16252fe279fdSBarry Smith Output Parameter: 1626863027abSJed Brown . btype - block by topological point or field node 1627863027abSJed Brown 1628863027abSJed Brown Level: advanced 1629863027abSJed Brown 16301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()` 1631863027abSJed Brown @*/ 1632863027abSJed Brown PetscErrorCode DMGetBlockingType(DM dm, DMBlockingType *btype) 1633863027abSJed Brown { 1634863027abSJed Brown PetscFunctionBegin; 1635863027abSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16364f572ea9SToby Isaac PetscAssertPointer(btype, 2); 1637863027abSJed Brown *btype = dm->blocking_type; 16383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1639863027abSJed Brown } 1640863027abSJed Brown 1641a89ea682SMatthew G Knepley /*@C 1642bb7acecfSBarry Smith DMGetWorkArray - Gets a work array guaranteed to be at least the input size, restore with `DMRestoreWorkArray()` 1643a89ea682SMatthew G Knepley 1644a89ea682SMatthew G Knepley Not Collective 1645a89ea682SMatthew G Knepley 1646a89ea682SMatthew G Knepley Input Parameters: 1647bb7acecfSBarry Smith + dm - the `DM` object 1648a5b23f4aSJose E. Roman . count - The minimum size 164920f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, or `MPIU_INT`) 1650a89ea682SMatthew G Knepley 1651a89ea682SMatthew G Knepley Output Parameter: 165260225df5SJacob Faibussowitsch . mem - the work array 1653a89ea682SMatthew G Knepley 1654a89ea682SMatthew G Knepley Level: developer 1655a89ea682SMatthew G Knepley 165673ff1848SBarry Smith Notes: 1657da81f932SPierre Jolivet A `DM` may stash the array between instantiations so using this routine may be more efficient than calling `PetscMalloc()` 1658bb7acecfSBarry Smith 1659bb7acecfSBarry Smith The array may contain nonzero values 1660bb7acecfSBarry Smith 16611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMRestoreWorkArray()`, `PetscMalloc()` 1662a89ea682SMatthew G Knepley @*/ 1663d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1664d71ae5a4SJacob Faibussowitsch { 1665aa1993deSMatthew G Knepley DMWorkLink link; 166669291d52SBarry Smith PetscMPIInt dsize; 1667a89ea682SMatthew G Knepley 1668a89ea682SMatthew G Knepley PetscFunctionBegin; 1669a89ea682SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16704f572ea9SToby Isaac PetscAssertPointer(mem, 4); 1671442f3b32SStefano Zampini if (!count) { 1672442f3b32SStefano Zampini *(void **)mem = NULL; 1673442f3b32SStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 1674442f3b32SStefano Zampini } 1675aa1993deSMatthew G Knepley if (dm->workin) { 1676aa1993deSMatthew G Knepley link = dm->workin; 1677aa1993deSMatthew G Knepley dm->workin = dm->workin->next; 1678aa1993deSMatthew G Knepley } else { 16794dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&link)); 1680a89ea682SMatthew G Knepley } 1681b77fa653SStefano Zampini /* Avoid MPI_Type_size for most used datatypes 1682b77fa653SStefano Zampini Get size directly */ 1683b77fa653SStefano Zampini if (dtype == MPIU_INT) dsize = sizeof(PetscInt); 1684b77fa653SStefano Zampini else if (dtype == MPIU_REAL) dsize = sizeof(PetscReal); 1685b77fa653SStefano Zampini #if defined(PETSC_USE_64BIT_INDICES) 1686b77fa653SStefano Zampini else if (dtype == MPI_INT) dsize = sizeof(int); 1687b77fa653SStefano Zampini #endif 1688b77fa653SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1689b77fa653SStefano Zampini else if (dtype == MPIU_SCALAR) dsize = sizeof(PetscScalar); 1690b77fa653SStefano Zampini #endif 1691b77fa653SStefano Zampini else PetscCallMPI(MPI_Type_size(dtype, &dsize)); 1692b77fa653SStefano Zampini 16935056fcd2SBarry Smith if (((size_t)dsize * count) > link->bytes) { 16949566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 16959566063dSJacob Faibussowitsch PetscCall(PetscMalloc(dsize * count, &link->mem)); 1696854ce69bSBarry Smith link->bytes = dsize * count; 1697aa1993deSMatthew G Knepley } 1698aa1993deSMatthew G Knepley link->next = dm->workout; 1699aa1993deSMatthew G Knepley dm->workout = link; 1700cea3dcb8SSatish Balay #if defined(__MEMCHECK_H) && (defined(PLAT_amd64_linux) || defined(PLAT_x86_linux) || defined(PLAT_amd64_darwin)) 170100d952a4SJed Brown VALGRIND_MAKE_MEM_NOACCESS((char *)link->mem + (size_t)dsize * count, link->bytes - (size_t)dsize * count); 170200d952a4SJed Brown VALGRIND_MAKE_MEM_UNDEFINED(link->mem, (size_t)dsize * count); 170300d952a4SJed Brown #endif 1704aa1993deSMatthew G Knepley *(void **)mem = link->mem; 17053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1706a89ea682SMatthew G Knepley } 1707a89ea682SMatthew G Knepley 1708aa1993deSMatthew G Knepley /*@C 1709bb7acecfSBarry Smith DMRestoreWorkArray - Restores a work array obtained with `DMCreateWorkArray()` 1710aa1993deSMatthew G Knepley 1711aa1993deSMatthew G Knepley Not Collective 1712aa1993deSMatthew G Knepley 1713aa1993deSMatthew G Knepley Input Parameters: 1714bb7acecfSBarry Smith + dm - the `DM` object 1715a5b23f4aSJose E. Roman . count - The minimum size 171620f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, `MPIU_INT` 1717aa1993deSMatthew G Knepley 1718aa1993deSMatthew G Knepley Output Parameter: 171960225df5SJacob Faibussowitsch . mem - the work array 1720aa1993deSMatthew G Knepley 1721aa1993deSMatthew G Knepley Level: developer 1722aa1993deSMatthew G Knepley 172373ff1848SBarry Smith Developer Note: 1724bb7acecfSBarry Smith count and dtype are ignored, they are only needed for `DMGetWorkArray()` 1725147403d9SBarry Smith 17261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMGetWorkArray()` 1727aa1993deSMatthew G Knepley @*/ 1728d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestoreWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1729d71ae5a4SJacob Faibussowitsch { 1730aa1993deSMatthew G Knepley DMWorkLink *p, link; 1731aa1993deSMatthew G Knepley 1732aa1993deSMatthew G Knepley PetscFunctionBegin; 1733aa1993deSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17344f572ea9SToby Isaac PetscAssertPointer(mem, 4); 1735a4e35b19SJacob Faibussowitsch (void)count; 1736a4e35b19SJacob Faibussowitsch (void)dtype; 1737442f3b32SStefano Zampini if (!*(void **)mem) PetscFunctionReturn(PETSC_SUCCESS); 1738aa1993deSMatthew G Knepley for (p = &dm->workout; (link = *p); p = &link->next) { 1739aa1993deSMatthew G Knepley if (link->mem == *(void **)mem) { 1740aa1993deSMatthew G Knepley *p = link->next; 1741aa1993deSMatthew G Knepley link->next = dm->workin; 1742aa1993deSMatthew G Knepley dm->workin = link; 17430298fd71SBarry Smith *(void **)mem = NULL; 17443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1745aa1993deSMatthew G Knepley } 1746aa1993deSMatthew G Knepley } 1747aa1993deSMatthew G Knepley SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Array was not checked out"); 1748aa1993deSMatthew G Knepley } 1749e7c4fc90SDmitry Karpeev 17508cda7954SMatthew G. Knepley /*@C 1751bb7acecfSBarry Smith DMSetNullSpaceConstructor - Provide a callback function which constructs the nullspace for a given field, defined with `DMAddField()`, when function spaces 1752bb7acecfSBarry Smith are joined or split, such as in `DMCreateSubDM()` 17538cda7954SMatthew G. Knepley 175420f4b53cSBarry Smith Logically Collective; No Fortran Support 17558cda7954SMatthew G. Knepley 17568cda7954SMatthew G. Knepley Input Parameters: 1757bb7acecfSBarry Smith + dm - The `DM` 17588cda7954SMatthew G. Knepley . field - The field number for the nullspace 17598cda7954SMatthew G. Knepley - nullsp - A callback to create the nullspace 17608cda7954SMatthew G. Knepley 176120f4b53cSBarry Smith Calling sequence of `nullsp`: 1762bb7acecfSBarry Smith + dm - The present `DM` 1763bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1764147403d9SBarry Smith . field - The field number in dm 1765147403d9SBarry Smith - nullSpace - The nullspace for the given field 17668cda7954SMatthew G. Knepley 176749762cbcSSatish Balay Level: intermediate 176849762cbcSSatish Balay 17691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1770147403d9SBarry Smith @*/ 1771a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1772d71ae5a4SJacob Faibussowitsch { 1773435a35e8SMatthew G Knepley PetscFunctionBegin; 1774435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17757a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1776435a35e8SMatthew G Knepley dm->nullspaceConstructors[field] = nullsp; 17773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1778435a35e8SMatthew G Knepley } 1779435a35e8SMatthew G Knepley 17808cda7954SMatthew G. Knepley /*@C 1781bb7acecfSBarry Smith DMGetNullSpaceConstructor - Return the callback function which constructs the nullspace for a given field, defined with `DMAddField()` 17828cda7954SMatthew G. Knepley 178320f4b53cSBarry Smith Not Collective; No Fortran Support 17848cda7954SMatthew G. Knepley 17858cda7954SMatthew G. Knepley Input Parameters: 1786bb7acecfSBarry Smith + dm - The `DM` 17878cda7954SMatthew G. Knepley - field - The field number for the nullspace 17888cda7954SMatthew G. Knepley 17898cda7954SMatthew G. Knepley Output Parameter: 17908cda7954SMatthew G. Knepley . nullsp - A callback to create the nullspace 17918cda7954SMatthew G. Knepley 179220f4b53cSBarry Smith Calling sequence of `nullsp`: 1793147403d9SBarry Smith + dm - The present DM 1794147403d9SBarry Smith . origField - The field number given above, in the original DM 1795147403d9SBarry Smith . field - The field number in dm 1796147403d9SBarry Smith - nullSpace - The nullspace for the given field 17978cda7954SMatthew G. Knepley 179849762cbcSSatish Balay Level: intermediate 179949762cbcSSatish Balay 18001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1801147403d9SBarry Smith @*/ 1802a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1803d71ae5a4SJacob Faibussowitsch { 18040a50eb56SMatthew G. Knepley PetscFunctionBegin; 18050a50eb56SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18064f572ea9SToby Isaac PetscAssertPointer(nullsp, 3); 18077a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 18080a50eb56SMatthew G. Knepley *nullsp = dm->nullspaceConstructors[field]; 18093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18100a50eb56SMatthew G. Knepley } 18110a50eb56SMatthew G. Knepley 18128cda7954SMatthew G. Knepley /*@C 1813bb7acecfSBarry Smith DMSetNearNullSpaceConstructor - Provide a callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 18148cda7954SMatthew G. Knepley 181520f4b53cSBarry Smith Logically Collective; No Fortran Support 18168cda7954SMatthew G. Knepley 18178cda7954SMatthew G. Knepley Input Parameters: 1818bb7acecfSBarry Smith + dm - The `DM` 18198cda7954SMatthew G. Knepley . field - The field number for the nullspace 18208cda7954SMatthew G. Knepley - nullsp - A callback to create the near-nullspace 18218cda7954SMatthew G. Knepley 182220f4b53cSBarry Smith Calling sequence of `nullsp`: 1823bb7acecfSBarry Smith + dm - The present `DM` 1824bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1825147403d9SBarry Smith . field - The field number in dm 1826147403d9SBarry Smith - nullSpace - The nullspace for the given field 18278cda7954SMatthew G. Knepley 182849762cbcSSatish Balay Level: intermediate 182949762cbcSSatish Balay 18301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`, 1831bb7acecfSBarry Smith `MatNullSpace` 1832147403d9SBarry Smith @*/ 1833a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1834d71ae5a4SJacob Faibussowitsch { 1835f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1836f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18377a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1838f9d4088aSMatthew G. Knepley dm->nearnullspaceConstructors[field] = nullsp; 18393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1840f9d4088aSMatthew G. Knepley } 1841f9d4088aSMatthew G. Knepley 18428cda7954SMatthew G. Knepley /*@C 1843bb7acecfSBarry Smith DMGetNearNullSpaceConstructor - Return the callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 18448cda7954SMatthew G. Knepley 184520f4b53cSBarry Smith Not Collective; No Fortran Support 18468cda7954SMatthew G. Knepley 18478cda7954SMatthew G. Knepley Input Parameters: 1848bb7acecfSBarry Smith + dm - The `DM` 18498cda7954SMatthew G. Knepley - field - The field number for the nullspace 18508cda7954SMatthew G. Knepley 18518cda7954SMatthew G. Knepley Output Parameter: 18528cda7954SMatthew G. Knepley . nullsp - A callback to create the near-nullspace 18538cda7954SMatthew G. Knepley 185420f4b53cSBarry Smith Calling sequence of `nullsp`: 1855bb7acecfSBarry Smith + dm - The present `DM` 1856bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1857147403d9SBarry Smith . field - The field number in dm 1858147403d9SBarry Smith - nullSpace - The nullspace for the given field 18598cda7954SMatthew G. Knepley 186049762cbcSSatish Balay Level: intermediate 186149762cbcSSatish Balay 18621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, 1863bb7acecfSBarry Smith `MatNullSpace`, `DMCreateSuperDM()` 1864147403d9SBarry Smith @*/ 1865a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1866d71ae5a4SJacob Faibussowitsch { 1867f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1868f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18694f572ea9SToby Isaac PetscAssertPointer(nullsp, 3); 18707a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1871f9d4088aSMatthew G. Knepley *nullsp = dm->nearnullspaceConstructors[field]; 18723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1873f9d4088aSMatthew G. Knepley } 1874f9d4088aSMatthew G. Knepley 18754f3b5142SJed Brown /*@C 1876bb7acecfSBarry Smith DMCreateFieldIS - Creates a set of `IS` objects with the global indices of dofs for each field defined with `DMAddField()` 18774d343eeaSMatthew G Knepley 187820f4b53cSBarry Smith Not Collective; No Fortran Support 18794d343eeaSMatthew G Knepley 18804d343eeaSMatthew G Knepley Input Parameter: 1881bb7acecfSBarry Smith . dm - the `DM` object 18824d343eeaSMatthew G Knepley 18834d343eeaSMatthew G Knepley Output Parameters: 188420f4b53cSBarry Smith + numFields - The number of fields (or `NULL` if not requested) 188520f4b53cSBarry Smith . fieldNames - The number of each field (or `NULL` if not requested) 188620f4b53cSBarry Smith - fields - The global indices for each field (or `NULL` if not requested) 18874d343eeaSMatthew G Knepley 18884d343eeaSMatthew G Knepley Level: intermediate 18894d343eeaSMatthew G Knepley 1890bb7acecfSBarry Smith Note: 189173ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `fieldNames` should be freed with 189273ff1848SBarry Smith `PetscFree()`, every entry of `fields` should be destroyed with `ISDestroy()`, and both arrays should be freed with 1893bb7acecfSBarry Smith `PetscFree()`. 189421c9b008SJed Brown 189573ff1848SBarry Smith Developer Note: 1896bb7acecfSBarry Smith It is not clear why both this function and `DMCreateFieldDecomposition()` exist. Having two seems redundant and confusing. This function should 1897bb7acecfSBarry Smith likely be removed. 1898bb7acecfSBarry Smith 18991cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1900bb7acecfSBarry Smith `DMCreateFieldDecomposition()` 19014d343eeaSMatthew G Knepley @*/ 1902d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldIS(DM dm, PetscInt *numFields, char ***fieldNames, IS **fields) 1903d71ae5a4SJacob Faibussowitsch { 190437d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 19054d343eeaSMatthew G Knepley 19064d343eeaSMatthew G Knepley PetscFunctionBegin; 19074d343eeaSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 190869ca1f37SDmitry Karpeev if (numFields) { 19094f572ea9SToby Isaac PetscAssertPointer(numFields, 2); 191069ca1f37SDmitry Karpeev *numFields = 0; 191169ca1f37SDmitry Karpeev } 191237d0c07bSMatthew G Knepley if (fieldNames) { 19134f572ea9SToby Isaac PetscAssertPointer(fieldNames, 3); 19140298fd71SBarry Smith *fieldNames = NULL; 191569ca1f37SDmitry Karpeev } 191669ca1f37SDmitry Karpeev if (fields) { 19174f572ea9SToby Isaac PetscAssertPointer(fields, 4); 19180298fd71SBarry Smith *fields = NULL; 191969ca1f37SDmitry Karpeev } 19209566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 192137d0c07bSMatthew G Knepley if (section) { 19223a544194SStefano Zampini PetscInt *fieldSizes, *fieldNc, **fieldIndices; 192337d0c07bSMatthew G Knepley PetscInt nF, f, pStart, pEnd, p; 192437d0c07bSMatthew G Knepley 19259566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 19269566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &nF)); 19279566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nF, &fieldSizes, nF, &fieldNc, nF, &fieldIndices)); 19289566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd)); 192937d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 193037d0c07bSMatthew G Knepley fieldSizes[f] = 0; 19319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &fieldNc[f])); 193237d0c07bSMatthew G Knepley } 193337d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 193437d0c07bSMatthew G Knepley PetscInt gdof; 193537d0c07bSMatthew G Knepley 19369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 193737d0c07bSMatthew G Knepley if (gdof > 0) { 193837d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19393a544194SStefano Zampini PetscInt fdof, fcdof, fpdof; 194037d0c07bSMatthew G Knepley 19419566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 19433a544194SStefano Zampini fpdof = fdof - fcdof; 19443a544194SStefano Zampini if (fpdof && fpdof != fieldNc[f]) { 19453a544194SStefano Zampini /* Layout does not admit a pointwise block size */ 19463a544194SStefano Zampini fieldNc[f] = 1; 19473a544194SStefano Zampini } 19483a544194SStefano Zampini fieldSizes[f] += fpdof; 194937d0c07bSMatthew G Knepley } 195037d0c07bSMatthew G Knepley } 195137d0c07bSMatthew G Knepley } 195237d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(fieldSizes[f], &fieldIndices[f])); 195437d0c07bSMatthew G Knepley fieldSizes[f] = 0; 195537d0c07bSMatthew G Knepley } 195637d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 195737d0c07bSMatthew G Knepley PetscInt gdof, goff; 195837d0c07bSMatthew G Knepley 19599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 196037d0c07bSMatthew G Knepley if (gdof > 0) { 19619566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &goff)); 196237d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 196337d0c07bSMatthew G Knepley PetscInt fdof, fcdof, fc; 196437d0c07bSMatthew G Knepley 19659566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 1967ad540459SPierre Jolivet for (fc = 0; fc < fdof - fcdof; ++fc, ++fieldSizes[f]) fieldIndices[f][fieldSizes[f]] = goff++; 196837d0c07bSMatthew G Knepley } 196937d0c07bSMatthew G Knepley } 197037d0c07bSMatthew G Knepley } 19718865f1eaSKarl Rupp if (numFields) *numFields = nF; 197237d0c07bSMatthew G Knepley if (fieldNames) { 19739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fieldNames)); 197437d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 197537d0c07bSMatthew G Knepley const char *fieldName; 197637d0c07bSMatthew G Knepley 19779566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 19789566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(fieldName, (char **)&(*fieldNames)[f])); 197937d0c07bSMatthew G Knepley } 198037d0c07bSMatthew G Knepley } 198137d0c07bSMatthew G Knepley if (fields) { 19829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fields)); 198337d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19843a544194SStefano Zampini PetscInt bs, in[2], out[2]; 19853a544194SStefano Zampini 19869566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), fieldSizes[f], fieldIndices[f], PETSC_OWN_POINTER, &(*fields)[f])); 19873a544194SStefano Zampini in[0] = -fieldNc[f]; 19883a544194SStefano Zampini in[1] = fieldNc[f]; 19891c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 19903a544194SStefano Zampini bs = (-out[0] == out[1]) ? out[1] : 1; 19919566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize((*fields)[f], bs)); 199237d0c07bSMatthew G Knepley } 199337d0c07bSMatthew G Knepley } 19949566063dSJacob Faibussowitsch PetscCall(PetscFree3(fieldSizes, fieldNc, fieldIndices)); 1995dbbe0bcdSBarry Smith } else PetscTryTypeMethod(dm, createfieldis, numFields, fieldNames, fields); 19963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19974d343eeaSMatthew G Knepley } 19984d343eeaSMatthew G Knepley 199916621825SDmitry Karpeev /*@C 2000bb7acecfSBarry Smith DMCreateFieldDecomposition - Returns a list of `IS` objects defining a decomposition of a problem into subproblems 2001a4e35b19SJacob Faibussowitsch corresponding to different fields. 2002e7c4fc90SDmitry Karpeev 200320f4b53cSBarry Smith Not Collective; No Fortran Support 2004e7c4fc90SDmitry Karpeev 2005e7c4fc90SDmitry Karpeev Input Parameter: 2006bb7acecfSBarry Smith . dm - the `DM` object 2007e7c4fc90SDmitry Karpeev 2008e7c4fc90SDmitry Karpeev Output Parameters: 200920f4b53cSBarry Smith + len - The number of fields (or `NULL` if not requested) 201020f4b53cSBarry Smith . namelist - The name for each field (or `NULL` if not requested) 201120f4b53cSBarry Smith . islist - The global indices for each field (or `NULL` if not requested) 201220f4b53cSBarry Smith - dmlist - The `DM`s for each field subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined) 2013e7c4fc90SDmitry Karpeev 2014e7c4fc90SDmitry Karpeev Level: intermediate 2015e7c4fc90SDmitry Karpeev 2016a4e35b19SJacob Faibussowitsch Notes: 2017a4e35b19SJacob Faibussowitsch Each `IS` contains the global indices of the dofs of the corresponding field, defined by 2018a4e35b19SJacob Faibussowitsch `DMAddField()`. The optional list of `DM`s define the `DM` for each subproblem. 2019a4e35b19SJacob Faibussowitsch 2020a4e35b19SJacob Faibussowitsch The same as `DMCreateFieldIS()` but also returns a `DM` for each field. 2021a4e35b19SJacob Faibussowitsch 202273ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with 202373ff1848SBarry Smith `PetscFree()`, every entry of `islist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`, 2024bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 2025e7c4fc90SDmitry Karpeev 202660225df5SJacob Faibussowitsch Developer Notes: 2027bb7acecfSBarry Smith It is not clear why this function and `DMCreateFieldIS()` exist. Having two seems redundant and confusing. 2028bb7acecfSBarry Smith 202973ff1848SBarry Smith Unlike `DMRefine()`, `DMCoarsen()`, and `DMCreateDomainDecomposition()` this provides no mechanism to provide hooks that are called after the 203073ff1848SBarry Smith decomposition is computed. 203173ff1848SBarry Smith 203273ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMCreateFieldIS()`, `DMCreateSubDM()`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()` 2033e7c4fc90SDmitry Karpeev @*/ 2034d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldDecomposition(DM dm, PetscInt *len, char ***namelist, IS **islist, DM **dmlist) 2035d71ae5a4SJacob Faibussowitsch { 2036e7c4fc90SDmitry Karpeev PetscFunctionBegin; 2037e7c4fc90SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 20388865f1eaSKarl Rupp if (len) { 20394f572ea9SToby Isaac PetscAssertPointer(len, 2); 20408865f1eaSKarl Rupp *len = 0; 20418865f1eaSKarl Rupp } 20428865f1eaSKarl Rupp if (namelist) { 20434f572ea9SToby Isaac PetscAssertPointer(namelist, 3); 2044ea78f98cSLisandro Dalcin *namelist = NULL; 20458865f1eaSKarl Rupp } 20468865f1eaSKarl Rupp if (islist) { 20474f572ea9SToby Isaac PetscAssertPointer(islist, 4); 2048ea78f98cSLisandro Dalcin *islist = NULL; 20498865f1eaSKarl Rupp } 20508865f1eaSKarl Rupp if (dmlist) { 20514f572ea9SToby Isaac PetscAssertPointer(dmlist, 5); 2052ea78f98cSLisandro Dalcin *dmlist = NULL; 20538865f1eaSKarl Rupp } 2054f3f0edfdSDmitry Karpeev /* 2055f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2056f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2057f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2058f3f0edfdSDmitry Karpeev */ 20597a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 206016621825SDmitry Karpeev if (!dm->ops->createfielddecomposition) { 2061435a35e8SMatthew G Knepley PetscSection section; 2062435a35e8SMatthew G Knepley PetscInt numFields, f; 2063435a35e8SMatthew G Knepley 20649566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 20659566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(section, &numFields)); 2066435a35e8SMatthew G Knepley if (section && numFields && dm->ops->createsubdm) { 2067f25d98f1SMatthew G. Knepley if (len) *len = numFields; 20689566063dSJacob Faibussowitsch if (namelist) PetscCall(PetscMalloc1(numFields, namelist)); 20699566063dSJacob Faibussowitsch if (islist) PetscCall(PetscMalloc1(numFields, islist)); 20709566063dSJacob Faibussowitsch if (dmlist) PetscCall(PetscMalloc1(numFields, dmlist)); 2071435a35e8SMatthew G Knepley for (f = 0; f < numFields; ++f) { 2072435a35e8SMatthew G Knepley const char *fieldName; 2073435a35e8SMatthew G Knepley 20749566063dSJacob Faibussowitsch PetscCall(DMCreateSubDM(dm, 1, &f, islist ? &(*islist)[f] : NULL, dmlist ? &(*dmlist)[f] : NULL)); 207503dc3394SMatthew G. Knepley if (namelist) { 20769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 20779566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(fieldName, (char **)&(*namelist)[f])); 2078435a35e8SMatthew G Knepley } 207903dc3394SMatthew G. Knepley } 2080435a35e8SMatthew G Knepley } else { 20819566063dSJacob Faibussowitsch PetscCall(DMCreateFieldIS(dm, len, namelist, islist)); 2082e7c4fc90SDmitry Karpeev /* By default there are no DMs associated with subproblems. */ 20830298fd71SBarry Smith if (dmlist) *dmlist = NULL; 2084e7c4fc90SDmitry Karpeev } 2085dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, createfielddecomposition, len, namelist, islist, dmlist); 20863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 208716621825SDmitry Karpeev } 208816621825SDmitry Karpeev 20895d83a8b1SBarry Smith /*@ 209020f4b53cSBarry Smith DMCreateSubDM - Returns an `IS` and `DM` encapsulating a subproblem defined by the fields passed in. 209120f4b53cSBarry Smith The fields are defined by `DMCreateFieldIS()`. 2092435a35e8SMatthew G Knepley 2093435a35e8SMatthew G Knepley Not collective 2094435a35e8SMatthew G Knepley 2095435a35e8SMatthew G Knepley Input Parameters: 2096bb7acecfSBarry Smith + dm - The `DM` object 2097bb7acecfSBarry Smith . numFields - The number of fields to select 20982adcc780SMatthew G. Knepley - fields - The field numbers of the selected fields 2099435a35e8SMatthew G Knepley 2100435a35e8SMatthew G Knepley Output Parameters: 2101b6971eaeSBarry Smith + is - The global indices for all the degrees of freedom in the new sub `DM`, use `NULL` if not needed 2102b6971eaeSBarry Smith - subdm - The `DM` for the subproblem, use `NULL` if not needed 2103435a35e8SMatthew G Knepley 210420f4b53cSBarry Smith Level: intermediate 210520f4b53cSBarry Smith 2106bb7acecfSBarry Smith Note: 2107bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 21085d3b26e6SMatthew G. Knepley 210960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateFieldIS()`, `DMCreateFieldDecomposition()`, `DMAddField()`, `DMCreateSuperDM()`, `IS`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 2110435a35e8SMatthew G Knepley @*/ 2111d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSubDM(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm) 2112d71ae5a4SJacob Faibussowitsch { 2113435a35e8SMatthew G Knepley PetscFunctionBegin; 2114435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 21154f572ea9SToby Isaac PetscAssertPointer(fields, 3); 21164f572ea9SToby Isaac if (is) PetscAssertPointer(is, 4); 21174f572ea9SToby Isaac if (subdm) PetscAssertPointer(subdm, 5); 2118dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createsubdm, numFields, fields, is, subdm); 21193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2120435a35e8SMatthew G Knepley } 2121435a35e8SMatthew G Knepley 21222adcc780SMatthew G. Knepley /*@C 2123bb7acecfSBarry Smith DMCreateSuperDM - Returns an arrays of `IS` and `DM` encapsulating a superproblem defined by multiple `DM`s passed in. 21242adcc780SMatthew G. Knepley 21252adcc780SMatthew G. Knepley Not collective 21262adcc780SMatthew G. Knepley 2127d8d19677SJose E. Roman Input Parameters: 2128bb7acecfSBarry Smith + dms - The `DM` objects 2129bb7acecfSBarry Smith - n - The number of `DM`s 21302adcc780SMatthew G. Knepley 21312adcc780SMatthew G. Knepley Output Parameters: 2132bb7acecfSBarry Smith + is - The global indices for each of subproblem within the super `DM`, or NULL 2133bb7acecfSBarry Smith - superdm - The `DM` for the superproblem 21342adcc780SMatthew G. Knepley 213520f4b53cSBarry Smith Level: intermediate 213620f4b53cSBarry Smith 2137bb7acecfSBarry Smith Note: 2138bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 21395d3b26e6SMatthew G. Knepley 214073ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateSubDM()`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`, `DMCreateDomainDecomposition()` 21412adcc780SMatthew G. Knepley @*/ 21425d83a8b1SBarry Smith PetscErrorCode DMCreateSuperDM(DM dms[], PetscInt n, IS *is[], DM *superdm) 2143d71ae5a4SJacob Faibussowitsch { 21442adcc780SMatthew G. Knepley PetscInt i; 21452adcc780SMatthew G. Knepley 21462adcc780SMatthew G. Knepley PetscFunctionBegin; 21474f572ea9SToby Isaac PetscAssertPointer(dms, 1); 2148ad540459SPierre Jolivet for (i = 0; i < n; ++i) PetscValidHeaderSpecific(dms[i], DM_CLASSID, 1); 21494f572ea9SToby Isaac if (is) PetscAssertPointer(is, 3); 21504f572ea9SToby Isaac PetscAssertPointer(superdm, 4); 2151bb7acecfSBarry Smith PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of DMs must be nonnegative: %" PetscInt_FMT, n); 2152bb7acecfSBarry Smith if (n) { 2153b9d85ea2SLisandro Dalcin DM dm = dms[0]; 215400045ab3SPierre Jolivet PetscCheck(dm->ops->createsuperdm, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No method createsuperdm for DM of type %s", ((PetscObject)dm)->type_name); 2155dbbe0bcdSBarry Smith PetscCall((*dm->ops->createsuperdm)(dms, n, is, superdm)); 21562adcc780SMatthew G. Knepley } 21573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21582adcc780SMatthew G. Knepley } 21592adcc780SMatthew G. Knepley 216016621825SDmitry Karpeev /*@C 2161a4e35b19SJacob Faibussowitsch DMCreateDomainDecomposition - Returns lists of `IS` objects defining a decomposition of a 2162a4e35b19SJacob Faibussowitsch problem into subproblems corresponding to restrictions to pairs of nested subdomains. 216316621825SDmitry Karpeev 216420f4b53cSBarry Smith Not Collective 216516621825SDmitry Karpeev 216616621825SDmitry Karpeev Input Parameter: 2167bb7acecfSBarry Smith . dm - the `DM` object 216816621825SDmitry Karpeev 216916621825SDmitry Karpeev Output Parameters: 217020f4b53cSBarry Smith + n - The number of subproblems in the domain decomposition (or `NULL` if not requested) 217120f4b53cSBarry Smith . namelist - The name for each subdomain (or `NULL` if not requested) 217273ff1848SBarry Smith . innerislist - The global indices for each inner subdomain (or `NULL`, if not requested) 217373ff1848SBarry Smith . outerislist - The global indices for each outer subdomain (or `NULL`, if not requested) 217473ff1848SBarry Smith - dmlist - The `DM`s for each subdomain subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined) 217516621825SDmitry Karpeev 217616621825SDmitry Karpeev Level: intermediate 217716621825SDmitry Karpeev 217873ff1848SBarry Smith Notes: 2179a4e35b19SJacob Faibussowitsch Each `IS` contains the global indices of the dofs of the corresponding subdomains with in the 2180a4e35b19SJacob Faibussowitsch dofs of the original `DM`. The inner subdomains conceptually define a nonoverlapping 2181a4e35b19SJacob Faibussowitsch covering, while outer subdomains can overlap. 2182a4e35b19SJacob Faibussowitsch 2183a4e35b19SJacob Faibussowitsch The optional list of `DM`s define a `DM` for each subproblem. 2184a4e35b19SJacob Faibussowitsch 218573ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with 218673ff1848SBarry Smith `PetscFree()`, every entry of `innerislist` and `outerislist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`, 2187bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 218816621825SDmitry Karpeev 2189a4e35b19SJacob Faibussowitsch Developer Notes: 219020f4b53cSBarry Smith The `dmlist` is for the inner subdomains or the outer subdomains or all subdomains? 2191bb7acecfSBarry Smith 219273ff1848SBarry Smith The names are inconsistent, the hooks use `DMSubDomainHook` which is nothing like `DMCreateDomainDecomposition()` while `DMRefineHook` is used for `DMRefine()`. 219373ff1848SBarry Smith 219473ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateFieldDecomposition()`, `DMDestroy()`, `DMCreateDomainDecompositionScatters()`, `DMView()`, `DMCreateInterpolation()`, 219573ff1848SBarry Smith `DMSubDomainHookAdd()`, `DMSubDomainHookRemove()`,`DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()` 219616621825SDmitry Karpeev @*/ 2197d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecomposition(DM dm, PetscInt *n, char ***namelist, IS **innerislist, IS **outerislist, DM **dmlist) 2198d71ae5a4SJacob Faibussowitsch { 2199be081cd6SPeter Brune DMSubDomainHookLink link; 2200be081cd6SPeter Brune PetscInt i, l; 220116621825SDmitry Karpeev 220216621825SDmitry Karpeev PetscFunctionBegin; 220316621825SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 22049371c9d4SSatish Balay if (n) { 22054f572ea9SToby Isaac PetscAssertPointer(n, 2); 22069371c9d4SSatish Balay *n = 0; 22079371c9d4SSatish Balay } 22089371c9d4SSatish Balay if (namelist) { 22094f572ea9SToby Isaac PetscAssertPointer(namelist, 3); 22109371c9d4SSatish Balay *namelist = NULL; 22119371c9d4SSatish Balay } 22129371c9d4SSatish Balay if (innerislist) { 22134f572ea9SToby Isaac PetscAssertPointer(innerislist, 4); 22149371c9d4SSatish Balay *innerislist = NULL; 22159371c9d4SSatish Balay } 22169371c9d4SSatish Balay if (outerislist) { 22174f572ea9SToby Isaac PetscAssertPointer(outerislist, 5); 22189371c9d4SSatish Balay *outerislist = NULL; 22199371c9d4SSatish Balay } 22209371c9d4SSatish Balay if (dmlist) { 22214f572ea9SToby Isaac PetscAssertPointer(dmlist, 6); 22229371c9d4SSatish Balay *dmlist = NULL; 22239371c9d4SSatish Balay } 2224f3f0edfdSDmitry Karpeev /* 2225f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2226f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2227f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2228f3f0edfdSDmitry Karpeev */ 22297a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 223016621825SDmitry Karpeev if (dm->ops->createdomaindecomposition) { 2231dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createdomaindecomposition, &l, namelist, innerislist, outerislist, dmlist); 223214a18fd3SPeter Brune /* copy subdomain hooks and context over to the subdomain DMs */ 2233f891f5b9SPatrick Sanan if (dmlist && *dmlist) { 2234be081cd6SPeter Brune for (i = 0; i < l; i++) { 2235be081cd6SPeter Brune for (link = dm->subdomainhook; link; link = link->next) { 22369566063dSJacob Faibussowitsch if (link->ddhook) PetscCall((*link->ddhook)(dm, (*dmlist)[i], link->ctx)); 2237be081cd6SPeter Brune } 2238648262bbSPatrick Sanan if (dm->ctx) (*dmlist)[i]->ctx = dm->ctx; 2239e7c4fc90SDmitry Karpeev } 224014a18fd3SPeter Brune } 2241bb7acecfSBarry Smith if (n) *n = l; 224214a18fd3SPeter Brune } 22433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2244e30e807fSPeter Brune } 2245e30e807fSPeter Brune 2246e30e807fSPeter Brune /*@C 224773ff1848SBarry Smith DMCreateDomainDecompositionScatters - Returns scatters to the subdomain vectors from the global vector for subdomains created with 224873ff1848SBarry Smith `DMCreateDomainDecomposition()` 2249e30e807fSPeter Brune 225020f4b53cSBarry Smith Not Collective 2251e30e807fSPeter Brune 2252e30e807fSPeter Brune Input Parameters: 2253bb7acecfSBarry Smith + dm - the `DM` object 225473ff1848SBarry Smith . n - the number of subdomains 2255e30e807fSPeter Brune - subdms - the local subdomains 2256e30e807fSPeter Brune 2257e30e807fSPeter Brune Output Parameters: 22586b867d5aSJose E. Roman + iscat - scatter from global vector to nonoverlapping global vector entries on subdomain 2259e30e807fSPeter Brune . oscat - scatter from global vector to overlapping global vector entries on subdomain 2260e30e807fSPeter Brune - gscat - scatter from global vector to local vector on subdomain (fills in ghosts) 2261e30e807fSPeter Brune 226220f4b53cSBarry Smith Level: developer 226320f4b53cSBarry Smith 2264bb7acecfSBarry Smith Note: 2265bb7acecfSBarry Smith This is an alternative to the iis and ois arguments in `DMCreateDomainDecomposition()` that allow for the solution 2266e30e807fSPeter Brune of general nonlinear problems with overlapping subdomain methods. While merely having index sets that enable subsets 2267e30e807fSPeter Brune of the residual equations to be created is fine for linear problems, nonlinear problems require local assembly of 2268e30e807fSPeter Brune solution and residual data. 2269e30e807fSPeter Brune 227073ff1848SBarry Smith Developer Note: 2271a4e35b19SJacob Faibussowitsch Can the subdms input be anything or are they exactly the `DM` obtained from 2272a4e35b19SJacob Faibussowitsch `DMCreateDomainDecomposition()`? 2273bb7acecfSBarry Smith 22741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 2275e30e807fSPeter Brune @*/ 22765d83a8b1SBarry Smith PetscErrorCode DMCreateDomainDecompositionScatters(DM dm, PetscInt n, DM *subdms, VecScatter *iscat[], VecScatter *oscat[], VecScatter *gscat[]) 2277d71ae5a4SJacob Faibussowitsch { 2278e30e807fSPeter Brune PetscFunctionBegin; 2279e30e807fSPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 22804f572ea9SToby Isaac PetscAssertPointer(subdms, 3); 2281dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createddscatters, n, subdms, iscat, oscat, gscat); 22823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2283e7c4fc90SDmitry Karpeev } 2284e7c4fc90SDmitry Karpeev 228547c6ae99SBarry Smith /*@ 2286bb7acecfSBarry Smith DMRefine - Refines a `DM` object using a standard nonadaptive refinement of the underlying mesh 228747c6ae99SBarry Smith 228820f4b53cSBarry Smith Collective 228947c6ae99SBarry Smith 2290d8d19677SJose E. Roman Input Parameters: 2291bb7acecfSBarry Smith + dm - the `DM` object 2292bb7acecfSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`) 229347c6ae99SBarry Smith 229447c6ae99SBarry Smith Output Parameter: 229520f4b53cSBarry Smith . dmf - the refined `DM`, or `NULL` 2296ae0a1c52SMatthew G Knepley 229720f4b53cSBarry Smith Options Database Key: 2298412e9a14SMatthew G. Knepley . -dm_plex_cell_refiner <strategy> - chooses the refinement strategy, e.g. regular, tohex 2299412e9a14SMatthew G. Knepley 230047c6ae99SBarry Smith Level: developer 230147c6ae99SBarry Smith 230220f4b53cSBarry Smith Note: 230320f4b53cSBarry Smith If no refinement was done, the return value is `NULL` 230420f4b53cSBarry Smith 230573ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`, 230673ff1848SBarry Smith `DMRefineHookAdd()`, `DMRefineHookRemove()` 230747c6ae99SBarry Smith @*/ 2308d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefine(DM dm, MPI_Comm comm, DM *dmf) 2309d71ae5a4SJacob Faibussowitsch { 2310c833c3b5SJed Brown DMRefineHookLink link; 231147c6ae99SBarry Smith 231247c6ae99SBarry Smith PetscFunctionBegin; 2313732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 23149566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Refine, dm, 0, 0, 0)); 2315dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, refine, comm, dmf); 23164057135bSMatthew G Knepley if (*dmf) { 231743842a1eSJed Brown (*dmf)->ops->creatematrix = dm->ops->creatematrix; 23188865f1eaSKarl Rupp 23199566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmf)); 23208865f1eaSKarl Rupp 2321644e2e5bSBarry Smith (*dmf)->ctx = dm->ctx; 23220598a293SJed Brown (*dmf)->leveldown = dm->leveldown; 2323656b349aSBarry Smith (*dmf)->levelup = dm->levelup + 1; 23248865f1eaSKarl Rupp 23259566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmf, dm->mattype)); 2326c833c3b5SJed Brown for (link = dm->refinehook; link; link = link->next) { 23271baa6e33SBarry Smith if (link->refinehook) PetscCall((*link->refinehook)(dm, *dmf, link->ctx)); 2328c833c3b5SJed Brown } 2329c833c3b5SJed Brown } 23309566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Refine, dm, 0, 0, 0)); 23313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2332c833c3b5SJed Brown } 2333c833c3b5SJed Brown 2334bb9467b5SJed Brown /*@C 2335c833c3b5SJed Brown DMRefineHookAdd - adds a callback to be run when interpolating a nonlinear problem to a finer grid 2336c833c3b5SJed Brown 233720f4b53cSBarry Smith Logically Collective; No Fortran Support 2338c833c3b5SJed Brown 23394165533cSJose E. Roman Input Parameters: 2340bb7acecfSBarry Smith + coarse - `DM` on which to run a hook when interpolating to a finer level 2341bb7acecfSBarry Smith . refinehook - function to run when setting up the finer level 2342f826b5fcSPierre Jolivet . interphook - function to run to update data on finer levels (once per `SNESSolve()`) 234320f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2344c833c3b5SJed Brown 234520f4b53cSBarry Smith Calling sequence of `refinehook`: 2346bb7acecfSBarry Smith + coarse - coarse level `DM` 2347bb7acecfSBarry Smith . fine - fine level `DM` to interpolate problem to 2348c833c3b5SJed Brown - ctx - optional user-defined function context 2349c833c3b5SJed Brown 235020f4b53cSBarry Smith Calling sequence of `interphook`: 2351bb7acecfSBarry Smith + coarse - coarse level `DM` 2352c833c3b5SJed Brown . interp - matrix interpolating a coarse-level solution to the finer grid 2353bb7acecfSBarry Smith . fine - fine level `DM` to update 2354c833c3b5SJed Brown - ctx - optional user-defined function context 2355c833c3b5SJed Brown 2356c833c3b5SJed Brown Level: advanced 2357c833c3b5SJed Brown 2358c833c3b5SJed Brown Notes: 2359bb7acecfSBarry Smith This function is only needed if auxiliary data that is attached to the `DM`s via, for example, `PetscObjectCompose()`, needs to be 2360bb7acecfSBarry Smith passed to fine grids while grid sequencing. 2361bb7acecfSBarry Smith 2362bb7acecfSBarry Smith The actual interpolation is done when `DMInterpolate()` is called. 2363c833c3b5SJed Brown 2364c833c3b5SJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 2365c833c3b5SJed Brown 23661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2367c833c3b5SJed Brown @*/ 2368a4e35b19SJacob Faibussowitsch PetscErrorCode DMRefineHookAdd(DM coarse, PetscErrorCode (*refinehook)(DM coarse, DM fine, void *ctx), PetscErrorCode (*interphook)(DM coarse, Mat interp, DM fine, void *ctx), void *ctx) 2369d71ae5a4SJacob Faibussowitsch { 2370c833c3b5SJed Brown DMRefineHookLink link, *p; 2371c833c3b5SJed Brown 2372c833c3b5SJed Brown PetscFunctionBegin; 2373c833c3b5SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 23743d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 23753ba16761SJacob Faibussowitsch if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 23763d8e3701SJed Brown } 23779566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2378c833c3b5SJed Brown link->refinehook = refinehook; 2379c833c3b5SJed Brown link->interphook = interphook; 2380c833c3b5SJed Brown link->ctx = ctx; 23810298fd71SBarry Smith link->next = NULL; 2382c833c3b5SJed Brown *p = link; 23833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2384c833c3b5SJed Brown } 2385c833c3b5SJed Brown 23863d8e3701SJed Brown /*@C 2387bb7acecfSBarry Smith DMRefineHookRemove - remove a callback from the list of hooks, that have been set with `DMRefineHookAdd()`, to be run when interpolating 2388bb7acecfSBarry Smith a nonlinear problem to a finer grid 23893d8e3701SJed Brown 239020f4b53cSBarry Smith Logically Collective; No Fortran Support 23913d8e3701SJed Brown 23924165533cSJose E. Roman Input Parameters: 2393bb7acecfSBarry Smith + coarse - the `DM` on which to run a hook when restricting to a coarser level 2394bb7acecfSBarry Smith . refinehook - function to run when setting up a finer level 2395bb7acecfSBarry Smith . interphook - function to run to update data on finer levels 239620f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 23973d8e3701SJed Brown 23983d8e3701SJed Brown Level: advanced 23993d8e3701SJed Brown 2400bb7acecfSBarry Smith Note: 24013d8e3701SJed Brown This function does nothing if the hook is not in the list. 24023d8e3701SJed Brown 24031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `DMCoarsenHookRemove()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 24043d8e3701SJed Brown @*/ 2405d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookRemove(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx) 2406d71ae5a4SJacob Faibussowitsch { 24073d8e3701SJed Brown DMRefineHookLink link, *p; 24083d8e3701SJed Brown 24093d8e3701SJed Brown PetscFunctionBegin; 24103d8e3701SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 24113d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 24123d8e3701SJed Brown if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) { 24133d8e3701SJed Brown link = *p; 24143d8e3701SJed Brown *p = link->next; 24159566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 24163d8e3701SJed Brown break; 24173d8e3701SJed Brown } 24183d8e3701SJed Brown } 24193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24203d8e3701SJed Brown } 24213d8e3701SJed Brown 2422c833c3b5SJed Brown /*@ 2423bb7acecfSBarry Smith DMInterpolate - interpolates user-defined problem data attached to a `DM` to a finer `DM` by running hooks registered by `DMRefineHookAdd()` 2424c833c3b5SJed Brown 2425c833c3b5SJed Brown Collective if any hooks are 2426c833c3b5SJed Brown 24274165533cSJose E. Roman Input Parameters: 2428bb7acecfSBarry Smith + coarse - coarser `DM` to use as a base 2429bb7acecfSBarry Smith . interp - interpolation matrix, apply using `MatInterpolate()` 2430bb7acecfSBarry Smith - fine - finer `DM` to update 2431c833c3b5SJed Brown 2432c833c3b5SJed Brown Level: developer 2433c833c3b5SJed Brown 243473ff1848SBarry Smith Developer Note: 2435bb7acecfSBarry Smith This routine is called `DMInterpolate()` while the hook is called `DMRefineHookAdd()`. It would be better to have an 2436bb7acecfSBarry Smith an API with consistent terminology. 2437bb7acecfSBarry Smith 24381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `MatInterpolate()` 2439c833c3b5SJed Brown @*/ 2440d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolate(DM coarse, Mat interp, DM fine) 2441d71ae5a4SJacob Faibussowitsch { 2442c833c3b5SJed Brown DMRefineHookLink link; 2443c833c3b5SJed Brown 2444c833c3b5SJed Brown PetscFunctionBegin; 2445c833c3b5SJed Brown for (link = fine->refinehook; link; link = link->next) { 24461baa6e33SBarry Smith if (link->interphook) PetscCall((*link->interphook)(coarse, interp, fine, link->ctx)); 24474057135bSMatthew G Knepley } 24483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 244947c6ae99SBarry Smith } 245047c6ae99SBarry Smith 2451eb3f98d2SBarry Smith /*@ 24521f3379b2SToby Isaac DMInterpolateSolution - Interpolates a solution from a coarse mesh to a fine mesh. 24531f3379b2SToby Isaac 245420f4b53cSBarry Smith Collective 24551f3379b2SToby Isaac 24564165533cSJose E. Roman Input Parameters: 2457bb7acecfSBarry Smith + coarse - coarse `DM` 2458bb7acecfSBarry Smith . fine - fine `DM` 2459bb7acecfSBarry Smith . interp - (optional) the matrix computed by `DMCreateInterpolation()`. Implementations may not need this, but if it 2460bb7acecfSBarry Smith is available it can avoid some recomputation. If it is provided, `MatInterpolate()` will be used if 2461bb7acecfSBarry Smith the coarse `DM` does not have a specialized implementation. 24621f3379b2SToby Isaac - coarseSol - solution on the coarse mesh 24631f3379b2SToby Isaac 24644165533cSJose E. Roman Output Parameter: 24651f3379b2SToby Isaac . fineSol - the interpolation of coarseSol to the fine mesh 24661f3379b2SToby Isaac 24671f3379b2SToby Isaac Level: developer 24681f3379b2SToby Isaac 2469bb7acecfSBarry Smith Note: 2470bb7acecfSBarry Smith This function exists because the interpolation of a solution vector between meshes is not always a linear 24711f3379b2SToby Isaac map. For example, if a boundary value problem has an inhomogeneous Dirichlet boundary condition that is compressed 24721f3379b2SToby Isaac out of the solution vector. Or if interpolation is inherently a nonlinear operation, such as a method using 24731f3379b2SToby Isaac slope-limiting reconstruction. 24741f3379b2SToby Isaac 247573ff1848SBarry Smith Developer Note: 2476bb7acecfSBarry Smith This doesn't just interpolate "solutions" so its API name is questionable. 2477bb7acecfSBarry Smith 24781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMInterpolate()`, `DMCreateInterpolation()` 24791f3379b2SToby Isaac @*/ 2480d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolateSolution(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol) 2481d71ae5a4SJacob Faibussowitsch { 24821f3379b2SToby Isaac PetscErrorCode (*interpsol)(DM, DM, Mat, Vec, Vec) = NULL; 24831f3379b2SToby Isaac 24841f3379b2SToby Isaac PetscFunctionBegin; 24851f3379b2SToby Isaac PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 24861f3379b2SToby Isaac if (interp) PetscValidHeaderSpecific(interp, MAT_CLASSID, 3); 24871f3379b2SToby Isaac PetscValidHeaderSpecific(coarseSol, VEC_CLASSID, 4); 24881f3379b2SToby Isaac PetscValidHeaderSpecific(fineSol, VEC_CLASSID, 5); 24891f3379b2SToby Isaac 24909566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)coarse, "DMInterpolateSolution_C", &interpsol)); 24911f3379b2SToby Isaac if (interpsol) { 24929566063dSJacob Faibussowitsch PetscCall((*interpsol)(coarse, fine, interp, coarseSol, fineSol)); 24931f3379b2SToby Isaac } else if (interp) { 24949566063dSJacob Faibussowitsch PetscCall(MatInterpolate(interp, coarseSol, fineSol)); 249598921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)coarse), PETSC_ERR_SUP, "DM %s does not implement DMInterpolateSolution()", ((PetscObject)coarse)->type_name); 24963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24971f3379b2SToby Isaac } 24981f3379b2SToby Isaac 24991f3379b2SToby Isaac /*@ 2500bb7acecfSBarry Smith DMGetRefineLevel - Gets the number of refinements that have generated this `DM` from some initial `DM`. 2501eb3f98d2SBarry Smith 2502eb3f98d2SBarry Smith Not Collective 2503eb3f98d2SBarry Smith 2504eb3f98d2SBarry Smith Input Parameter: 2505bb7acecfSBarry Smith . dm - the `DM` object 2506eb3f98d2SBarry Smith 2507eb3f98d2SBarry Smith Output Parameter: 2508eb3f98d2SBarry Smith . level - number of refinements 2509eb3f98d2SBarry Smith 2510eb3f98d2SBarry Smith Level: developer 2511eb3f98d2SBarry Smith 2512bb7acecfSBarry Smith Note: 2513bb7acecfSBarry Smith This can be used, by example, to set the number of coarser levels associated with this `DM` for a multigrid solver. 2514bb7acecfSBarry Smith 25151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2516eb3f98d2SBarry Smith @*/ 2517d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRefineLevel(DM dm, PetscInt *level) 2518d71ae5a4SJacob Faibussowitsch { 2519eb3f98d2SBarry Smith PetscFunctionBegin; 2520eb3f98d2SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2521eb3f98d2SBarry Smith *level = dm->levelup; 25223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2523eb3f98d2SBarry Smith } 2524eb3f98d2SBarry Smith 2525fef3a512SBarry Smith /*@ 2526bb7acecfSBarry Smith DMSetRefineLevel - Sets the number of refinements that have generated this `DM`. 2527fef3a512SBarry Smith 2528fef3a512SBarry Smith Not Collective 2529fef3a512SBarry Smith 2530d8d19677SJose E. Roman Input Parameters: 2531bb7acecfSBarry Smith + dm - the `DM` object 2532fef3a512SBarry Smith - level - number of refinements 2533fef3a512SBarry Smith 2534fef3a512SBarry Smith Level: advanced 2535fef3a512SBarry Smith 253695452b02SPatrick Sanan Notes: 2537bb7acecfSBarry Smith This value is used by `PCMG` to determine how many multigrid levels to use 2538fef3a512SBarry Smith 2539bb7acecfSBarry Smith The values are usually set automatically by the process that is causing the refinements of an initial `DM` by calling this routine. 2540bb7acecfSBarry Smith 25411cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRefineLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2542fef3a512SBarry Smith @*/ 2543d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRefineLevel(DM dm, PetscInt level) 2544d71ae5a4SJacob Faibussowitsch { 2545fef3a512SBarry Smith PetscFunctionBegin; 2546fef3a512SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2547fef3a512SBarry Smith dm->levelup = level; 25483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2549fef3a512SBarry Smith } 2550fef3a512SBarry Smith 2551d410b0cfSMatthew G. Knepley /*@ 2552bb7acecfSBarry Smith DMExtrude - Extrude a `DM` object from a surface 2553d410b0cfSMatthew G. Knepley 255420f4b53cSBarry Smith Collective 2555d410b0cfSMatthew G. Knepley 2556f1a722f8SMatthew G. Knepley Input Parameters: 2557bb7acecfSBarry Smith + dm - the `DM` object 2558d410b0cfSMatthew G. Knepley - layers - the number of extruded cell layers 2559d410b0cfSMatthew G. Knepley 2560d410b0cfSMatthew G. Knepley Output Parameter: 256120f4b53cSBarry Smith . dme - the extruded `DM`, or `NULL` 2562d410b0cfSMatthew G. Knepley 2563d410b0cfSMatthew G. Knepley Level: developer 2564d410b0cfSMatthew G. Knepley 256520f4b53cSBarry Smith Note: 256620f4b53cSBarry Smith If no extrusion was done, the return value is `NULL` 256720f4b53cSBarry Smith 25681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()` 2569d410b0cfSMatthew G. Knepley @*/ 2570d71ae5a4SJacob Faibussowitsch PetscErrorCode DMExtrude(DM dm, PetscInt layers, DM *dme) 2571d71ae5a4SJacob Faibussowitsch { 2572d410b0cfSMatthew G. Knepley PetscFunctionBegin; 2573d410b0cfSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2574dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, extrude, layers, dme); 2575d410b0cfSMatthew G. Knepley if (*dme) { 2576d410b0cfSMatthew G. Knepley (*dme)->ops->creatematrix = dm->ops->creatematrix; 25779566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dme)); 2578d410b0cfSMatthew G. Knepley (*dme)->ctx = dm->ctx; 25799566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dme, dm->mattype)); 2580d410b0cfSMatthew G. Knepley } 25813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2582d410b0cfSMatthew G. Knepley } 2583d410b0cfSMatthew G. Knepley 2584d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformDM_Internal(DM dm, DM *tdm) 2585d71ae5a4SJacob Faibussowitsch { 2586ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2587ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 25884f572ea9SToby Isaac PetscAssertPointer(tdm, 2); 2589ca3d3a14SMatthew G. Knepley *tdm = dm->transformDM; 25903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2591ca3d3a14SMatthew G. Knepley } 2592ca3d3a14SMatthew G. Knepley 2593d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformVec_Internal(DM dm, Vec *tv) 2594d71ae5a4SJacob Faibussowitsch { 2595ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2596ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 25974f572ea9SToby Isaac PetscAssertPointer(tv, 2); 2598ca3d3a14SMatthew G. Knepley *tv = dm->transform; 25993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2600ca3d3a14SMatthew G. Knepley } 2601ca3d3a14SMatthew G. Knepley 2602ca3d3a14SMatthew G. Knepley /*@ 2603bb7acecfSBarry Smith DMHasBasisTransform - Whether the `DM` employs a basis transformation from functions in global vectors to functions in local vectors 2604ca3d3a14SMatthew G. Knepley 2605ca3d3a14SMatthew G. Knepley Input Parameter: 260620f4b53cSBarry Smith . dm - The `DM` 2607ca3d3a14SMatthew G. Knepley 2608ca3d3a14SMatthew G. Knepley Output Parameter: 260920f4b53cSBarry Smith . flg - `PETSC_TRUE` if a basis transformation should be done 2610ca3d3a14SMatthew G. Knepley 2611ca3d3a14SMatthew G. Knepley Level: developer 2612ca3d3a14SMatthew G. Knepley 26131cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`, `DMPlexCreateBasisRotation()` 2614ca3d3a14SMatthew G. Knepley @*/ 2615d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasBasisTransform(DM dm, PetscBool *flg) 2616d71ae5a4SJacob Faibussowitsch { 2617ca3d3a14SMatthew G. Knepley Vec tv; 2618ca3d3a14SMatthew G. Knepley 2619ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2620ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26214f572ea9SToby Isaac PetscAssertPointer(flg, 2); 26229566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 2623ca3d3a14SMatthew G. Knepley *flg = tv ? PETSC_TRUE : PETSC_FALSE; 26243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2625ca3d3a14SMatthew G. Knepley } 2626ca3d3a14SMatthew G. Knepley 2627d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConstructBasisTransform_Internal(DM dm) 2628d71ae5a4SJacob Faibussowitsch { 2629ca3d3a14SMatthew G. Knepley PetscSection s, ts; 2630ca3d3a14SMatthew G. Knepley PetscScalar *ta; 2631ca3d3a14SMatthew G. Knepley PetscInt cdim, pStart, pEnd, p, Nf, f, Nc, dof; 2632ca3d3a14SMatthew G. Knepley 2633ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 26349566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 26359566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 26369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 26379566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 26389566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->transformDM)); 26399566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm->transformDM, &ts)); 26409566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(ts, Nf)); 26419566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(ts, pStart, pEnd)); 2642ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26439566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(s, f, &Nc)); 2644ca3d3a14SMatthew G. Knepley /* We could start to label fields by their transformation properties */ 2645ca3d3a14SMatthew G. Knepley if (Nc != cdim) continue; 2646ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 26479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, p, f, &dof)); 2648ca3d3a14SMatthew G. Knepley if (!dof) continue; 26499566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(ts, p, f, PetscSqr(cdim))); 26509566063dSJacob Faibussowitsch PetscCall(PetscSectionAddDof(ts, p, PetscSqr(cdim))); 2651ca3d3a14SMatthew G. Knepley } 2652ca3d3a14SMatthew G. Knepley } 26539566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(ts)); 26549566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(dm->transformDM, &dm->transform)); 26559566063dSJacob Faibussowitsch PetscCall(VecGetArray(dm->transform, &ta)); 2656ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 2657ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26589566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof)); 2659ca3d3a14SMatthew G. Knepley if (dof) { 2660ca3d3a14SMatthew G. Knepley PetscReal x[3] = {0.0, 0.0, 0.0}; 2661ca3d3a14SMatthew G. Knepley PetscScalar *tva; 2662ca3d3a14SMatthew G. Knepley const PetscScalar *A; 2663ca3d3a14SMatthew G. Knepley 2664ca3d3a14SMatthew G. Knepley /* TODO Get quadrature point for this dual basis vector for coordinate */ 26659566063dSJacob Faibussowitsch PetscCall((*dm->transformGetMatrix)(dm, x, PETSC_TRUE, &A, dm->transformCtx)); 26669566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm->transformDM, p, f, ta, (void *)&tva)); 26679566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tva, A, PetscSqr(cdim))); 2668ca3d3a14SMatthew G. Knepley } 2669ca3d3a14SMatthew G. Knepley } 2670ca3d3a14SMatthew G. Knepley } 26719566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(dm->transform, &ta)); 26723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2673ca3d3a14SMatthew G. Knepley } 2674ca3d3a14SMatthew G. Knepley 2675d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyTransform(DM dm, DM newdm) 2676d71ae5a4SJacob Faibussowitsch { 2677ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2678ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2679ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(newdm, DM_CLASSID, 2); 2680ca3d3a14SMatthew G. Knepley newdm->transformCtx = dm->transformCtx; 2681ca3d3a14SMatthew G. Knepley newdm->transformSetUp = dm->transformSetUp; 2682ca3d3a14SMatthew G. Knepley newdm->transformDestroy = NULL; 2683ca3d3a14SMatthew G. Knepley newdm->transformGetMatrix = dm->transformGetMatrix; 26849566063dSJacob Faibussowitsch if (newdm->transformSetUp) PetscCall(DMConstructBasisTransform_Internal(newdm)); 26853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2686ca3d3a14SMatthew G. Knepley } 2687ca3d3a14SMatthew G. Knepley 2688bb9467b5SJed Brown /*@C 2689bb7acecfSBarry Smith DMGlobalToLocalHookAdd - adds a callback to be run when `DMGlobalToLocal()` is called 2690baf369e7SPeter Brune 269120f4b53cSBarry Smith Logically Collective 2692baf369e7SPeter Brune 26934165533cSJose E. Roman Input Parameters: 2694bb7acecfSBarry Smith + dm - the `DM` 2695bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMGlobalToLocalBegin()` 2696bb7acecfSBarry Smith . endhook - function to run after `DMGlobalToLocalEnd()` has completed 269720f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2698baf369e7SPeter Brune 269920f4b53cSBarry Smith Calling sequence of `beginhook`: 2700a4e35b19SJacob Faibussowitsch + dm - global `DM` 2701baf369e7SPeter Brune . g - global vector 2702baf369e7SPeter Brune . mode - mode 2703baf369e7SPeter Brune . l - local vector 2704baf369e7SPeter Brune - ctx - optional user-defined function context 2705baf369e7SPeter Brune 270620f4b53cSBarry Smith Calling sequence of `endhook`: 2707a4e35b19SJacob Faibussowitsch + dm - global `DM` 2708a4e35b19SJacob Faibussowitsch . g - global vector 2709a4e35b19SJacob Faibussowitsch . mode - mode 2710a4e35b19SJacob Faibussowitsch . l - local vector 2711baf369e7SPeter Brune - ctx - optional user-defined function context 2712baf369e7SPeter Brune 2713baf369e7SPeter Brune Level: advanced 2714baf369e7SPeter Brune 2715bb7acecfSBarry Smith Note: 2716bb7acecfSBarry Smith The hook may be used to provide, for example, values that represent boundary conditions in the local vectors that do not exist on the global vector. 2717bb7acecfSBarry Smith 27181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocal()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2719baf369e7SPeter Brune @*/ 2720a4e35b19SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), PetscErrorCode (*endhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), void *ctx) 2721d71ae5a4SJacob Faibussowitsch { 2722baf369e7SPeter Brune DMGlobalToLocalHookLink link, *p; 2723baf369e7SPeter Brune 2724baf369e7SPeter Brune PetscFunctionBegin; 2725baf369e7SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2726baf369e7SPeter Brune for (p = &dm->gtolhook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 27279566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2728baf369e7SPeter Brune link->beginhook = beginhook; 2729baf369e7SPeter Brune link->endhook = endhook; 2730baf369e7SPeter Brune link->ctx = ctx; 27310298fd71SBarry Smith link->next = NULL; 2732baf369e7SPeter Brune *p = link; 27333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2734baf369e7SPeter Brune } 2735baf369e7SPeter Brune 2736d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGlobalToLocalHook_Constraints(DM dm, Vec g, InsertMode mode, Vec l, void *ctx) 2737d71ae5a4SJacob Faibussowitsch { 27384c274da1SToby Isaac Mat cMat; 273979769bd5SJed Brown Vec cVec, cBias; 27404c274da1SToby Isaac PetscSection section, cSec; 27414c274da1SToby Isaac PetscInt pStart, pEnd, p, dof; 27424c274da1SToby Isaac 27434c274da1SToby Isaac PetscFunctionBegin; 2744a4e35b19SJacob Faibussowitsch (void)g; 2745a4e35b19SJacob Faibussowitsch (void)ctx; 27464c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 27479566063dSJacob Faibussowitsch PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, &cBias)); 27484c274da1SToby Isaac if (cMat && (mode == INSERT_VALUES || mode == INSERT_ALL_VALUES || mode == INSERT_BC_VALUES)) { 27495db9a05bSToby Isaac PetscInt nRows; 27505db9a05bSToby Isaac 27519566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 27523ba16761SJacob Faibussowitsch if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS); 27539566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 27549566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 27559566063dSJacob Faibussowitsch PetscCall(MatMult(cMat, l, cVec)); 27569566063dSJacob Faibussowitsch if (cBias) PetscCall(VecAXPY(cVec, 1., cBias)); 27579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 27584c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 27599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 27604c274da1SToby Isaac if (dof) { 27614c274da1SToby Isaac PetscScalar *vals; 27629566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(cVec, cSec, p, &vals)); 27639566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(l, section, p, vals, INSERT_ALL_VALUES)); 27644c274da1SToby Isaac } 27654c274da1SToby Isaac } 27669566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 27674c274da1SToby Isaac } 27683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27694c274da1SToby Isaac } 27704c274da1SToby Isaac 277147c6ae99SBarry Smith /*@ 277201729b5cSPatrick Sanan DMGlobalToLocal - update local vectors from global vector 277301729b5cSPatrick Sanan 277420f4b53cSBarry Smith Neighbor-wise Collective 277501729b5cSPatrick Sanan 277601729b5cSPatrick Sanan Input Parameters: 2777bb7acecfSBarry Smith + dm - the `DM` object 277801729b5cSPatrick Sanan . g - the global vector 2779bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 278001729b5cSPatrick Sanan - l - the local vector 278101729b5cSPatrick Sanan 278220f4b53cSBarry Smith Level: beginner 278320f4b53cSBarry Smith 278401729b5cSPatrick Sanan Notes: 2785bb7acecfSBarry Smith The communication involved in this update can be overlapped with computation by instead using 2786bb7acecfSBarry Smith `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()`. 2787bb7acecfSBarry Smith 2788bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 278901729b5cSPatrick Sanan 27901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocalHookAdd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, 279160225df5SJacob Faibussowitsch `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, 2792bb7acecfSBarry Smith `DMGlobalToLocalBegin()` `DMGlobalToLocalEnd()` 279301729b5cSPatrick Sanan @*/ 2794d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocal(DM dm, Vec g, InsertMode mode, Vec l) 2795d71ae5a4SJacob Faibussowitsch { 279601729b5cSPatrick Sanan PetscFunctionBegin; 27979566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, g, mode, l)); 27989566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, g, mode, l)); 27993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 280001729b5cSPatrick Sanan } 280101729b5cSPatrick Sanan 280201729b5cSPatrick Sanan /*@ 280347c6ae99SBarry Smith DMGlobalToLocalBegin - Begins updating local vectors from global vector 280447c6ae99SBarry Smith 280520f4b53cSBarry Smith Neighbor-wise Collective 280647c6ae99SBarry Smith 280747c6ae99SBarry Smith Input Parameters: 2808bb7acecfSBarry Smith + dm - the `DM` object 280947c6ae99SBarry Smith . g - the global vector 2810bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 281147c6ae99SBarry Smith - l - the local vector 281247c6ae99SBarry Smith 281301729b5cSPatrick Sanan Level: intermediate 281447c6ae99SBarry Smith 2815bb7acecfSBarry Smith Notes: 2816bb7acecfSBarry Smith The operation is completed with `DMGlobalToLocalEnd()` 2817bb7acecfSBarry Smith 2818bb7acecfSBarry Smith One can perform local computations between the `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` to overlap communication and computation 2819bb7acecfSBarry Smith 2820bb7acecfSBarry Smith `DMGlobalToLocal()` is a short form of `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` 2821bb7acecfSBarry Smith 2822bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 2823bb7acecfSBarry Smith 282460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()` 282547c6ae99SBarry Smith @*/ 2826d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 2827d71ae5a4SJacob Faibussowitsch { 28287128ae9fSMatthew G Knepley PetscSF sf; 2829baf369e7SPeter Brune DMGlobalToLocalHookLink link; 283047c6ae99SBarry Smith 283147c6ae99SBarry Smith PetscFunctionBegin; 2832171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2833baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 28341baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, g, mode, l, link->ctx)); 2835baf369e7SPeter Brune } 28369566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 28377128ae9fSMatthew G Knepley if (sf) { 2838ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2839ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2840d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 28417128ae9fSMatthew G Knepley 28427a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 28439566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 28449566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 28459566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(sf, MPIU_SCALAR, gmtype, gArray, lmtype, lArray, MPI_REPLACE)); 28469566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 28479566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 28487128ae9fSMatthew G Knepley } else { 2849fa1e479aSStefano Zampini PetscUseTypeMethod(dm, globaltolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 28507128ae9fSMatthew G Knepley } 28513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 285247c6ae99SBarry Smith } 285347c6ae99SBarry Smith 285447c6ae99SBarry Smith /*@ 285547c6ae99SBarry Smith DMGlobalToLocalEnd - Ends updating local vectors from global vector 285647c6ae99SBarry Smith 285720f4b53cSBarry Smith Neighbor-wise Collective 285847c6ae99SBarry Smith 285947c6ae99SBarry Smith Input Parameters: 2860bb7acecfSBarry Smith + dm - the `DM` object 286147c6ae99SBarry Smith . g - the global vector 2862bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 286347c6ae99SBarry Smith - l - the local vector 286447c6ae99SBarry Smith 286501729b5cSPatrick Sanan Level: intermediate 286647c6ae99SBarry Smith 2867bb7acecfSBarry Smith Note: 2868bb7acecfSBarry Smith See `DMGlobalToLocalBegin()` for details. 2869bb7acecfSBarry Smith 287060225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()` 287147c6ae99SBarry Smith @*/ 2872d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 2873d71ae5a4SJacob Faibussowitsch { 28747128ae9fSMatthew G Knepley PetscSF sf; 2875ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2876ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2877ca3d3a14SMatthew G. Knepley PetscBool transform; 2878baf369e7SPeter Brune DMGlobalToLocalHookLink link; 2879d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 288047c6ae99SBarry Smith 288147c6ae99SBarry Smith PetscFunctionBegin; 2882171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 28839566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 28849566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 28857128ae9fSMatthew G Knepley if (sf) { 28867a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 28877128ae9fSMatthew G Knepley 28889566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 28899566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 28909566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, gArray, lArray, MPI_REPLACE)); 28919566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 28929566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 28939566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexGlobalToLocalBasis(dm, l)); 28947128ae9fSMatthew G Knepley } else { 2895fa1e479aSStefano Zampini PetscUseTypeMethod(dm, globaltolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 28967128ae9fSMatthew G Knepley } 28979566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalHook_Constraints(dm, g, mode, l, NULL)); 2898baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 28999566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 2900baf369e7SPeter Brune } 29013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 290247c6ae99SBarry Smith } 290347c6ae99SBarry Smith 2904d4d07f1eSToby Isaac /*@C 2905d4d07f1eSToby Isaac DMLocalToGlobalHookAdd - adds a callback to be run when a local to global is called 2906d4d07f1eSToby Isaac 290720f4b53cSBarry Smith Logically Collective 2908d4d07f1eSToby Isaac 29094165533cSJose E. Roman Input Parameters: 2910bb7acecfSBarry Smith + dm - the `DM` 2911bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMLocalToGlobalBegin()` 2912bb7acecfSBarry Smith . endhook - function to run after `DMLocalToGlobalEnd()` has completed 291320f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2914d4d07f1eSToby Isaac 291520f4b53cSBarry Smith Calling sequence of `beginhook`: 2916a4e35b19SJacob Faibussowitsch + global - global `DM` 2917d4d07f1eSToby Isaac . l - local vector 2918d4d07f1eSToby Isaac . mode - mode 2919d4d07f1eSToby Isaac . g - global vector 2920d4d07f1eSToby Isaac - ctx - optional user-defined function context 2921d4d07f1eSToby Isaac 292220f4b53cSBarry Smith Calling sequence of `endhook`: 2923bb7acecfSBarry Smith + global - global `DM` 2924d4d07f1eSToby Isaac . l - local vector 2925d4d07f1eSToby Isaac . mode - mode 2926d4d07f1eSToby Isaac . g - global vector 2927d4d07f1eSToby Isaac - ctx - optional user-defined function context 2928d4d07f1eSToby Isaac 2929d4d07f1eSToby Isaac Level: advanced 2930d4d07f1eSToby Isaac 29311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMRefineHookAdd()`, `DMGlobalToLocalHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2932d4d07f1eSToby Isaac @*/ 2933a4e35b19SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), PetscErrorCode (*endhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), void *ctx) 2934d71ae5a4SJacob Faibussowitsch { 2935d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, *p; 2936d4d07f1eSToby Isaac 2937d4d07f1eSToby Isaac PetscFunctionBegin; 2938d4d07f1eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2939d4d07f1eSToby Isaac for (p = &dm->ltoghook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 29409566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2941d4d07f1eSToby Isaac link->beginhook = beginhook; 2942d4d07f1eSToby Isaac link->endhook = endhook; 2943d4d07f1eSToby Isaac link->ctx = ctx; 2944d4d07f1eSToby Isaac link->next = NULL; 2945d4d07f1eSToby Isaac *p = link; 29463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2947d4d07f1eSToby Isaac } 2948d4d07f1eSToby Isaac 2949d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMLocalToGlobalHook_Constraints(DM dm, Vec l, InsertMode mode, Vec g, void *ctx) 2950d71ae5a4SJacob Faibussowitsch { 29514c274da1SToby Isaac PetscFunctionBegin; 2952a4e35b19SJacob Faibussowitsch (void)g; 2953a4e35b19SJacob Faibussowitsch (void)ctx; 29544c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29552b6b7d09SToby Isaac if (mode == ADD_VALUES || mode == ADD_ALL_VALUES || mode == ADD_BC_VALUES) { 29562b6b7d09SToby Isaac Mat cMat; 29572b6b7d09SToby Isaac Vec cVec; 29585db9a05bSToby Isaac PetscInt nRows; 29592b6b7d09SToby Isaac PetscSection section, cSec; 29602b6b7d09SToby Isaac PetscInt pStart, pEnd, p, dof; 29612b6b7d09SToby Isaac 29622b6b7d09SToby Isaac PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, NULL)); 29632b6b7d09SToby Isaac if (!cMat) PetscFunctionReturn(PETSC_SUCCESS); 29645db9a05bSToby Isaac 29659566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 29663ba16761SJacob Faibussowitsch if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS); 29679566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 29689566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 29699566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 29704c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 29719566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 29724c274da1SToby Isaac if (dof) { 29734c274da1SToby Isaac PetscInt d; 29744c274da1SToby Isaac PetscScalar *vals; 29759566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(l, section, p, &vals)); 29769566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(cVec, cSec, p, vals, mode)); 29774c274da1SToby Isaac /* for this to be the true transpose, we have to zero the values that 29784c274da1SToby Isaac * we just extracted */ 2979ad540459SPierre Jolivet for (d = 0; d < dof; d++) vals[d] = 0.; 29804c274da1SToby Isaac } 29814c274da1SToby Isaac } 29829566063dSJacob Faibussowitsch PetscCall(MatMultTransposeAdd(cMat, cVec, l, l)); 29839566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 29844c274da1SToby Isaac } 29853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29864c274da1SToby Isaac } 298701729b5cSPatrick Sanan /*@ 298801729b5cSPatrick Sanan DMLocalToGlobal - updates global vectors from local vectors 298901729b5cSPatrick Sanan 299020f4b53cSBarry Smith Neighbor-wise Collective 299101729b5cSPatrick Sanan 299201729b5cSPatrick Sanan Input Parameters: 2993bb7acecfSBarry Smith + dm - the `DM` object 299401729b5cSPatrick Sanan . l - the local vector 2995bb7acecfSBarry Smith . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 299601729b5cSPatrick Sanan - g - the global vector 299701729b5cSPatrick Sanan 299820f4b53cSBarry Smith Level: beginner 299920f4b53cSBarry Smith 300001729b5cSPatrick Sanan Notes: 300101729b5cSPatrick Sanan The communication involved in this update can be overlapped with computation by using 3002bb7acecfSBarry Smith `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()`. 300301729b5cSPatrick Sanan 3004bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 3005bb7acecfSBarry Smith 3006bb7acecfSBarry Smith `INSERT_VALUES` is not supported for `DMDA`; in that case simply compute the values directly into a global vector instead of a local one. 3007bb7acecfSBarry Smith 3008bb7acecfSBarry Smith Use `DMLocalToGlobalHookAdd()` to add additional operations that are performed on the data during the update process 300901729b5cSPatrick Sanan 30101cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`, `DMLocalToGlobalHookAdd()`, `DMGlobaToLocallHookAdd()` 301101729b5cSPatrick Sanan @*/ 3012d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobal(DM dm, Vec l, InsertMode mode, Vec g) 3013d71ae5a4SJacob Faibussowitsch { 301401729b5cSPatrick Sanan PetscFunctionBegin; 30159566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, l, mode, g)); 30169566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, l, mode, g)); 30173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 301801729b5cSPatrick Sanan } 30194c274da1SToby Isaac 302047c6ae99SBarry Smith /*@ 302101729b5cSPatrick Sanan DMLocalToGlobalBegin - begins updating global vectors from local vectors 30229a42bb27SBarry Smith 302320f4b53cSBarry Smith Neighbor-wise Collective 30249a42bb27SBarry Smith 30259a42bb27SBarry Smith Input Parameters: 3026bb7acecfSBarry Smith + dm - the `DM` object 3027f6813fd5SJed Brown . l - the local vector 3028aa624791SPierre Jolivet . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 30291eb28f2eSBarry Smith - g - the global vector 30309a42bb27SBarry Smith 303120f4b53cSBarry Smith Level: intermediate 303220f4b53cSBarry Smith 303395452b02SPatrick Sanan Notes: 3034bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 3035bb7acecfSBarry Smith 3036bb7acecfSBarry Smith `INSERT_VALUES is` not supported for `DMDA`, in that case simply compute the values directly into a global vector instead of a local one. 3037bb7acecfSBarry Smith 3038bb7acecfSBarry Smith Use `DMLocalToGlobalEnd()` to complete the communication process. 3039bb7acecfSBarry Smith 3040bb7acecfSBarry Smith `DMLocalToGlobal()` is a short form of `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()` 3041bb7acecfSBarry Smith 3042bb7acecfSBarry Smith `DMLocalToGlobalHookAdd()` may be used to provide additional operations that are performed during the update process. 30439a42bb27SBarry Smith 30441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()` 30459a42bb27SBarry Smith @*/ 3046d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalBegin(DM dm, Vec l, InsertMode mode, Vec g) 3047d71ae5a4SJacob Faibussowitsch { 30487128ae9fSMatthew G Knepley PetscSF sf; 304984330215SMatthew G. Knepley PetscSection s, gs; 3050d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3051ca3d3a14SMatthew G. Knepley Vec tmpl; 3052ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3053ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3054fa88e482SJed Brown PetscBool isInsert, transform, l_inplace = PETSC_FALSE, g_inplace = PETSC_FALSE; 3055d0295fc0SJunchao Zhang PetscMemType lmtype = PETSC_MEMTYPE_HOST, gmtype = PETSC_MEMTYPE_HOST; 30569a42bb27SBarry Smith 30579a42bb27SBarry Smith PetscFunctionBegin; 3058171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3059d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 30601baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, l, mode, g, link->ctx)); 3061d4d07f1eSToby Isaac } 30629566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalHook_Constraints(dm, l, mode, g, NULL)); 30639566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 30649566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 30657128ae9fSMatthew G Knepley switch (mode) { 30667128ae9fSMatthew G Knepley case INSERT_VALUES: 30677128ae9fSMatthew G Knepley case INSERT_ALL_VALUES: 3068d71ae5a4SJacob Faibussowitsch case INSERT_BC_VALUES: 3069d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3070d71ae5a4SJacob Faibussowitsch break; 30717128ae9fSMatthew G Knepley case ADD_VALUES: 30727128ae9fSMatthew G Knepley case ADD_ALL_VALUES: 3073d71ae5a4SJacob Faibussowitsch case ADD_BC_VALUES: 3074d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3075d71ae5a4SJacob Faibussowitsch break; 3076d71ae5a4SJacob Faibussowitsch default: 3077d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 30787128ae9fSMatthew G Knepley } 3079ca3d3a14SMatthew G. Knepley if ((sf && !isInsert) || (s && isInsert)) { 30809566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3081ca3d3a14SMatthew G. Knepley if (transform) { 30829566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 30839566063dSJacob Faibussowitsch PetscCall(VecCopy(l, tmpl)); 30849566063dSJacob Faibussowitsch PetscCall(DMPlexLocalToGlobalBasis(dm, tmpl)); 30859566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3086fa88e482SJed Brown } else if (isInsert) { 30879566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l, &lArray)); 3088fa88e482SJed Brown } else { 30899566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, &lmtype)); 3090fa88e482SJed Brown l_inplace = PETSC_TRUE; 3091ca3d3a14SMatthew G. Knepley } 3092fa88e482SJed Brown if (s && isInsert) { 30939566063dSJacob Faibussowitsch PetscCall(VecGetArray(g, &gArray)); 3094fa88e482SJed Brown } else { 30959566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, &gmtype)); 3096fa88e482SJed Brown g_inplace = PETSC_TRUE; 3097fa88e482SJed Brown } 3098ca3d3a14SMatthew G. Knepley if (sf && !isInsert) { 30999566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(sf, MPIU_SCALAR, lmtype, lArray, gmtype, gArray, MPIU_SUM)); 310084330215SMatthew G. Knepley } else if (s && isInsert) { 310184330215SMatthew G. Knepley PetscInt gStart, pStart, pEnd, p; 310284330215SMatthew G. Knepley 31039566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gs)); 31049566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 31059566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(g, &gStart, NULL)); 310684330215SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 3107b3b16f48SMatthew G. Knepley PetscInt dof, gdof, cdof, gcdof, off, goff, d, e; 310884330215SMatthew G. Knepley 31099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s, p, &dof)); 31109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(gs, p, &gdof)); 31119566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s, p, &cdof)); 31129566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(gs, p, &gcdof)); 31139566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(s, p, &off)); 31149566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(gs, p, &goff)); 3115b3b16f48SMatthew G. Knepley /* Ignore off-process data and points with no global data */ 311603442857SMatthew G. Knepley if (!gdof || goff < 0) continue; 31177a8be351SBarry Smith PetscCheck(dof == gdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 3118b3b16f48SMatthew G. Knepley /* If no constraints are enforced in the global vector */ 3119b3b16f48SMatthew G. Knepley if (!gcdof) { 312084330215SMatthew G. Knepley for (d = 0; d < dof; ++d) gArray[goff - gStart + d] = lArray[off + d]; 3121b3b16f48SMatthew G. Knepley /* If constraints are enforced in the global vector */ 3122b3b16f48SMatthew G. Knepley } else if (cdof == gcdof) { 312384330215SMatthew G. Knepley const PetscInt *cdofs; 312484330215SMatthew G. Knepley PetscInt cind = 0; 312584330215SMatthew G. Knepley 31269566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(s, p, &cdofs)); 3127b3b16f48SMatthew G. Knepley for (d = 0, e = 0; d < dof; ++d) { 31289371c9d4SSatish Balay if ((cind < cdof) && (d == cdofs[cind])) { 31299371c9d4SSatish Balay ++cind; 31309371c9d4SSatish Balay continue; 31319371c9d4SSatish Balay } 3132b3b16f48SMatthew G. Knepley gArray[goff - gStart + e++] = lArray[off + d]; 313384330215SMatthew G. Knepley } 31347a8be351SBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 313584330215SMatthew G. Knepley } 3136ca3d3a14SMatthew G. Knepley } 3137fa88e482SJed Brown if (g_inplace) { 31389566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 3139fa88e482SJed Brown } else { 31409566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(g, &gArray)); 3141fa88e482SJed Brown } 3142ca3d3a14SMatthew G. Knepley if (transform) { 31439566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 31449566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3145fa88e482SJed Brown } else if (l_inplace) { 31469566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3147ca3d3a14SMatthew G. Knepley } else { 31489566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l, &lArray)); 3149ca3d3a14SMatthew G. Knepley } 31507128ae9fSMatthew G Knepley } else { 3151fa1e479aSStefano Zampini PetscUseTypeMethod(dm, localtoglobalbegin, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g); 31527128ae9fSMatthew G Knepley } 31533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31549a42bb27SBarry Smith } 31559a42bb27SBarry Smith 31569a42bb27SBarry Smith /*@ 31579a42bb27SBarry Smith DMLocalToGlobalEnd - updates global vectors from local vectors 315847c6ae99SBarry Smith 315920f4b53cSBarry Smith Neighbor-wise Collective 316047c6ae99SBarry Smith 316147c6ae99SBarry Smith Input Parameters: 3162bb7acecfSBarry Smith + dm - the `DM` object 3163f6813fd5SJed Brown . l - the local vector 3164bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 3165f6813fd5SJed Brown - g - the global vector 316647c6ae99SBarry Smith 316701729b5cSPatrick Sanan Level: intermediate 316847c6ae99SBarry Smith 3169bb7acecfSBarry Smith Note: 3170bb7acecfSBarry Smith See `DMLocalToGlobalBegin()` for full details 3171bb7acecfSBarry Smith 317260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()` 317347c6ae99SBarry Smith @*/ 3174d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalEnd(DM dm, Vec l, InsertMode mode, Vec g) 3175d71ae5a4SJacob Faibussowitsch { 31767128ae9fSMatthew G Knepley PetscSF sf; 317784330215SMatthew G. Knepley PetscSection s; 3178d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3179ca3d3a14SMatthew G. Knepley PetscBool isInsert, transform; 318047c6ae99SBarry Smith 318147c6ae99SBarry Smith PetscFunctionBegin; 3182171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 31839566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 31849566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 31857128ae9fSMatthew G Knepley switch (mode) { 31867128ae9fSMatthew G Knepley case INSERT_VALUES: 3187d71ae5a4SJacob Faibussowitsch case INSERT_ALL_VALUES: 3188d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3189d71ae5a4SJacob Faibussowitsch break; 31907128ae9fSMatthew G Knepley case ADD_VALUES: 3191d71ae5a4SJacob Faibussowitsch case ADD_ALL_VALUES: 3192d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3193d71ae5a4SJacob Faibussowitsch break; 3194d71ae5a4SJacob Faibussowitsch default: 3195d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 31967128ae9fSMatthew G Knepley } 319784330215SMatthew G. Knepley if (sf && !isInsert) { 3198ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3199ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3200ca3d3a14SMatthew G. Knepley Vec tmpl; 320184330215SMatthew G. Knepley 32029566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3203ca3d3a14SMatthew G. Knepley if (transform) { 32049566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 32059566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3206ca3d3a14SMatthew G. Knepley } else { 32079566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, NULL)); 3208ca3d3a14SMatthew G. Knepley } 32099566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, NULL)); 32109566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_SCALAR, lArray, gArray, MPIU_SUM)); 3211ca3d3a14SMatthew G. Knepley if (transform) { 32129566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 32139566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3214ca3d3a14SMatthew G. Knepley } else { 32159566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3216ca3d3a14SMatthew G. Knepley } 32179566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 321884330215SMatthew G. Knepley } else if (s && isInsert) { 32197128ae9fSMatthew G Knepley } else { 3220fa1e479aSStefano Zampini PetscUseTypeMethod(dm, localtoglobalend, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g); 32217128ae9fSMatthew G Knepley } 3222d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 32239566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 3224d4d07f1eSToby Isaac } 32253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 322647c6ae99SBarry Smith } 322747c6ae99SBarry Smith 3228f089877aSRichard Tran Mills /*@ 3229a4e35b19SJacob Faibussowitsch DMLocalToLocalBegin - Begins the process of mapping values from a local vector (that include 3230a4e35b19SJacob Faibussowitsch ghost points that contain irrelevant values) to another local vector where the ghost points 3231a4e35b19SJacob Faibussowitsch in the second are set correctly from values on other MPI ranks. 3232f089877aSRichard Tran Mills 323320f4b53cSBarry Smith Neighbor-wise Collective 3234f089877aSRichard Tran Mills 3235f089877aSRichard Tran Mills Input Parameters: 3236bb7acecfSBarry Smith + dm - the `DM` object 3237bc0a1609SRichard Tran Mills . g - the original local vector 3238bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3239f089877aSRichard Tran Mills 3240bc0a1609SRichard Tran Mills Output Parameter: 3241bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3242f089877aSRichard Tran Mills 3243f089877aSRichard Tran Mills Level: intermediate 3244f089877aSRichard Tran Mills 324573ff1848SBarry Smith Note: 3246a4e35b19SJacob Faibussowitsch Must be followed by `DMLocalToLocalEnd()`. 3247a4e35b19SJacob Faibussowitsch 324860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3249f089877aSRichard Tran Mills @*/ 3250d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 3251d71ae5a4SJacob Faibussowitsch { 3252f089877aSRichard Tran Mills PetscFunctionBegin; 3253f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32549f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 32559f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 32569f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 32573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3258f089877aSRichard Tran Mills } 3259f089877aSRichard Tran Mills 3260f089877aSRichard Tran Mills /*@ 3261bb7acecfSBarry Smith DMLocalToLocalEnd - Maps from a local vector to another local vector where the ghost 3262bb7acecfSBarry Smith points in the second are set correctly. Must be preceded by `DMLocalToLocalBegin()`. 3263f089877aSRichard Tran Mills 326420f4b53cSBarry Smith Neighbor-wise Collective 3265f089877aSRichard Tran Mills 3266f089877aSRichard Tran Mills Input Parameters: 326760225df5SJacob Faibussowitsch + dm - the `DM` object 3268bc0a1609SRichard Tran Mills . g - the original local vector 3269bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3270f089877aSRichard Tran Mills 3271bc0a1609SRichard Tran Mills Output Parameter: 3272bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3273f089877aSRichard Tran Mills 3274f089877aSRichard Tran Mills Level: intermediate 3275f089877aSRichard Tran Mills 327660225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3277f089877aSRichard Tran Mills @*/ 3278d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 3279d71ae5a4SJacob Faibussowitsch { 3280f089877aSRichard Tran Mills PetscFunctionBegin; 3281f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32829f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 32839f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 32849f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 32853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3286f089877aSRichard Tran Mills } 3287f089877aSRichard Tran Mills 328847c6ae99SBarry Smith /*@ 3289bb7acecfSBarry Smith DMCoarsen - Coarsens a `DM` object using a standard, non-adaptive coarsening of the underlying mesh 329047c6ae99SBarry Smith 329120f4b53cSBarry Smith Collective 329247c6ae99SBarry Smith 3293d8d19677SJose E. Roman Input Parameters: 3294bb7acecfSBarry Smith + dm - the `DM` object 329520f4b53cSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`) 329647c6ae99SBarry Smith 329747c6ae99SBarry Smith Output Parameter: 3298bb7acecfSBarry Smith . dmc - the coarsened `DM` 329947c6ae99SBarry Smith 330047c6ae99SBarry Smith Level: developer 330147c6ae99SBarry Smith 330273ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`, 330373ff1848SBarry Smith `DMCoarsenHookAdd()`, `DMCoarsenHookRemove()` 330447c6ae99SBarry Smith @*/ 3305d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsen(DM dm, MPI_Comm comm, DM *dmc) 3306d71ae5a4SJacob Faibussowitsch { 3307b17ce1afSJed Brown DMCoarsenHookLink link; 330847c6ae99SBarry Smith 330947c6ae99SBarry Smith PetscFunctionBegin; 3310171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 33119566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Coarsen, dm, 0, 0, 0)); 3312dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, coarsen, comm, dmc); 3313b9d85ea2SLisandro Dalcin if (*dmc) { 3314a3574896SRichard Tran Mills (*dmc)->bind_below = dm->bind_below; /* Propagate this from parent DM; otherwise -dm_bind_below will be useless for multigrid cases. */ 33159566063dSJacob Faibussowitsch PetscCall(DMSetCoarseDM(dm, *dmc)); 331643842a1eSJed Brown (*dmc)->ops->creatematrix = dm->ops->creatematrix; 33179566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmc)); 3318644e2e5bSBarry Smith (*dmc)->ctx = dm->ctx; 33190598a293SJed Brown (*dmc)->levelup = dm->levelup; 3320656b349aSBarry Smith (*dmc)->leveldown = dm->leveldown + 1; 33219566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmc, dm->mattype)); 3322b17ce1afSJed Brown for (link = dm->coarsenhook; link; link = link->next) { 33239566063dSJacob Faibussowitsch if (link->coarsenhook) PetscCall((*link->coarsenhook)(dm, *dmc, link->ctx)); 3324b17ce1afSJed Brown } 3325b9d85ea2SLisandro Dalcin } 33269566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Coarsen, dm, 0, 0, 0)); 33277a8be351SBarry Smith PetscCheck(*dmc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "NULL coarse mesh produced"); 33283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3329b17ce1afSJed Brown } 3330b17ce1afSJed Brown 3331bb9467b5SJed Brown /*@C 3332b17ce1afSJed Brown DMCoarsenHookAdd - adds a callback to be run when restricting a nonlinear problem to the coarse grid 3333b17ce1afSJed Brown 333420f4b53cSBarry Smith Logically Collective; No Fortran Support 3335b17ce1afSJed Brown 33364165533cSJose E. Roman Input Parameters: 3337bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3338b17ce1afSJed Brown . coarsenhook - function to run when setting up a coarser level 3339bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels (called once per `SNESSolve()`) 334020f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3341b17ce1afSJed Brown 334220f4b53cSBarry Smith Calling sequence of `coarsenhook`: 3343bb7acecfSBarry Smith + fine - fine level `DM` 3344bb7acecfSBarry Smith . coarse - coarse level `DM` to restrict problem to 3345b17ce1afSJed Brown - ctx - optional user-defined function context 3346b17ce1afSJed Brown 334720f4b53cSBarry Smith Calling sequence of `restricthook`: 3348bb7acecfSBarry Smith + fine - fine level `DM` 3349bb7acecfSBarry Smith . mrestrict - matrix restricting a fine-level solution to the coarse grid, usually the transpose of the interpolation 3350c833c3b5SJed Brown . rscale - scaling vector for restriction 3351c833c3b5SJed Brown . inject - matrix restricting by injection 3352b17ce1afSJed Brown . coarse - coarse level DM to update 3353b17ce1afSJed Brown - ctx - optional user-defined function context 3354b17ce1afSJed Brown 3355b17ce1afSJed Brown Level: advanced 3356b17ce1afSJed Brown 3357b17ce1afSJed Brown Notes: 3358bb7acecfSBarry Smith This function is only needed if auxiliary data, attached to the `DM` with `PetscObjectCompose()`, needs to be set up or passed from the fine `DM` to the coarse `DM`. 3359b17ce1afSJed Brown 3360b17ce1afSJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 3361b17ce1afSJed Brown 3362b17ce1afSJed Brown In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3363bb7acecfSBarry Smith extract the finest level information from its context (instead of from the `SNES`). 3364b17ce1afSJed Brown 3365bb7acecfSBarry Smith The hooks are automatically called by `DMRestrict()` 3366bb7acecfSBarry Smith 33671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3368b17ce1afSJed Brown @*/ 3369a4e35b19SJacob Faibussowitsch PetscErrorCode DMCoarsenHookAdd(DM fine, PetscErrorCode (*coarsenhook)(DM fine, DM coarse, void *ctx), PetscErrorCode (*restricthook)(DM fine, Mat mrestrict, Vec rscale, Mat inject, DM coarse, void *ctx), void *ctx) 3370d71ae5a4SJacob Faibussowitsch { 3371b17ce1afSJed Brown DMCoarsenHookLink link, *p; 3372b17ce1afSJed Brown 3373b17ce1afSJed Brown PetscFunctionBegin; 3374b17ce1afSJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 33751e3d8eccSJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 33763ba16761SJacob Faibussowitsch if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 33771e3d8eccSJed Brown } 33789566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 3379b17ce1afSJed Brown link->coarsenhook = coarsenhook; 3380b17ce1afSJed Brown link->restricthook = restricthook; 3381b17ce1afSJed Brown link->ctx = ctx; 33820298fd71SBarry Smith link->next = NULL; 3383b17ce1afSJed Brown *p = link; 33843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3385b17ce1afSJed Brown } 3386b17ce1afSJed Brown 3387dc822a44SJed Brown /*@C 3388bb7acecfSBarry Smith DMCoarsenHookRemove - remove a callback set with `DMCoarsenHookAdd()` 3389dc822a44SJed Brown 339020f4b53cSBarry Smith Logically Collective; No Fortran Support 3391dc822a44SJed Brown 33924165533cSJose E. Roman Input Parameters: 3393bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3394dc822a44SJed Brown . coarsenhook - function to run when setting up a coarser level 3395bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels 339620f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3397dc822a44SJed Brown 3398dc822a44SJed Brown Level: advanced 3399dc822a44SJed Brown 340073ff1848SBarry Smith Notes: 340173ff1848SBarry Smith This function does nothing if the `coarsenhook` is not in the list. 340273ff1848SBarry Smith 340373ff1848SBarry Smith See `DMCoarsenHookAdd()` for the calling sequence of `coarsenhook` and `restricthook` 3404dc822a44SJed Brown 34051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3406dc822a44SJed Brown @*/ 3407d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookRemove(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx) 3408d71ae5a4SJacob Faibussowitsch { 3409dc822a44SJed Brown DMCoarsenHookLink link, *p; 3410dc822a44SJed Brown 3411dc822a44SJed Brown PetscFunctionBegin; 3412dc822a44SJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 3413dc822a44SJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3414dc822a44SJed Brown if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3415dc822a44SJed Brown link = *p; 3416dc822a44SJed Brown *p = link->next; 34179566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3418dc822a44SJed Brown break; 3419dc822a44SJed Brown } 3420dc822a44SJed Brown } 34213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3422dc822a44SJed Brown } 3423dc822a44SJed Brown 3424b17ce1afSJed Brown /*@ 3425bb7acecfSBarry Smith DMRestrict - restricts user-defined problem data to a coarser `DM` by running hooks registered by `DMCoarsenHookAdd()` 3426b17ce1afSJed Brown 3427b17ce1afSJed Brown Collective if any hooks are 3428b17ce1afSJed Brown 34294165533cSJose E. Roman Input Parameters: 3430bb7acecfSBarry Smith + fine - finer `DM` from which the data is obtained 3431bb7acecfSBarry Smith . restrct - restriction matrix, apply using `MatRestrict()`, usually the transpose of the interpolation 3432e91eccc2SStefano Zampini . rscale - scaling vector for restriction 3433bb7acecfSBarry Smith . inject - injection matrix, also use `MatRestrict()` 343420f4b53cSBarry Smith - coarse - coarser `DM` to update 3435b17ce1afSJed Brown 3436b17ce1afSJed Brown Level: developer 3437b17ce1afSJed Brown 343873ff1848SBarry Smith Developer Note: 3439bb7acecfSBarry Smith Though this routine is called `DMRestrict()` the hooks are added with `DMCoarsenHookAdd()`, a consistent terminology would be better 3440bb7acecfSBarry Smith 34411cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMInterpolate()`, `DMRefineHookAdd()` 3442b17ce1afSJed Brown @*/ 3443d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestrict(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse) 3444d71ae5a4SJacob Faibussowitsch { 3445b17ce1afSJed Brown DMCoarsenHookLink link; 3446b17ce1afSJed Brown 3447b17ce1afSJed Brown PetscFunctionBegin; 3448b17ce1afSJed Brown for (link = fine->coarsenhook; link; link = link->next) { 34491baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(fine, restrct, rscale, inject, coarse, link->ctx)); 3450b17ce1afSJed Brown } 34513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 345247c6ae99SBarry Smith } 345347c6ae99SBarry Smith 3454bb9467b5SJed Brown /*@C 345573ff1848SBarry Smith DMSubDomainHookAdd - adds a callback to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()` 34565dbd56e3SPeter Brune 345720f4b53cSBarry Smith Logically Collective; No Fortran Support 34585dbd56e3SPeter Brune 34594165533cSJose E. Roman Input Parameters: 3460bb7acecfSBarry Smith + global - global `DM` 3461bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 34625dbd56e3SPeter Brune . restricthook - function to run to update data on block solve (at the beginning of the block solve) 346320f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 34645dbd56e3SPeter Brune 346520f4b53cSBarry Smith Calling sequence of `ddhook`: 3466bb7acecfSBarry Smith + global - global `DM` 346773ff1848SBarry Smith . block - subdomain `DM` 3468ec4806b8SPeter Brune - ctx - optional user-defined function context 3469ec4806b8SPeter Brune 347020f4b53cSBarry Smith Calling sequence of `restricthook`: 3471bb7acecfSBarry Smith + global - global `DM` 347273ff1848SBarry Smith . out - scatter to the outer (with ghost and overlap points) sub vector 347373ff1848SBarry Smith . in - scatter to sub vector values only owned locally 347473ff1848SBarry Smith . block - subdomain `DM` 34755dbd56e3SPeter Brune - ctx - optional user-defined function context 34765dbd56e3SPeter Brune 34775dbd56e3SPeter Brune Level: advanced 34785dbd56e3SPeter Brune 34795dbd56e3SPeter Brune Notes: 348073ff1848SBarry Smith This function can be used if auxiliary data needs to be set up on subdomain `DM`s. 34815dbd56e3SPeter Brune 34825dbd56e3SPeter Brune If this function is called multiple times, the hooks will be run in the order they are added. 34835dbd56e3SPeter Brune 34845dbd56e3SPeter Brune In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3485bb7acecfSBarry Smith extract the global information from its context (instead of from the `SNES`). 34865dbd56e3SPeter Brune 348773ff1848SBarry Smith Developer Note: 348873ff1848SBarry Smith It is unclear what "block solve" means within the definition of `restricthook` 348973ff1848SBarry Smith 349073ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`, `DMCreateDomainDecomposition()` 34915dbd56e3SPeter Brune @*/ 3492a4e35b19SJacob Faibussowitsch PetscErrorCode DMSubDomainHookAdd(DM global, PetscErrorCode (*ddhook)(DM global, DM block, void *ctx), PetscErrorCode (*restricthook)(DM global, VecScatter out, VecScatter in, DM block, void *ctx), void *ctx) 3493d71ae5a4SJacob Faibussowitsch { 3494be081cd6SPeter Brune DMSubDomainHookLink link, *p; 34955dbd56e3SPeter Brune 34965dbd56e3SPeter Brune PetscFunctionBegin; 34975dbd56e3SPeter Brune PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3498b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 34993ba16761SJacob Faibussowitsch if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 3500b3a6b972SJed Brown } 35019566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 35025dbd56e3SPeter Brune link->restricthook = restricthook; 3503be081cd6SPeter Brune link->ddhook = ddhook; 35045dbd56e3SPeter Brune link->ctx = ctx; 35050298fd71SBarry Smith link->next = NULL; 35065dbd56e3SPeter Brune *p = link; 35073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35085dbd56e3SPeter Brune } 35095dbd56e3SPeter Brune 3510b3a6b972SJed Brown /*@C 351173ff1848SBarry Smith DMSubDomainHookRemove - remove a callback from the list to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()` 3512b3a6b972SJed Brown 351320f4b53cSBarry Smith Logically Collective; No Fortran Support 3514b3a6b972SJed Brown 35154165533cSJose E. Roman Input Parameters: 3516bb7acecfSBarry Smith + global - global `DM` 3517bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 3518b3a6b972SJed Brown . restricthook - function to run to update data on block solve (at the beginning of the block solve) 351920f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3520b3a6b972SJed Brown 3521b3a6b972SJed Brown Level: advanced 3522b3a6b972SJed Brown 352373ff1848SBarry Smith Note: 352473ff1848SBarry Smith See `DMSubDomainHookAdd()` for the calling sequences of `ddhook` and `restricthook` 352573ff1848SBarry Smith 352673ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`, 352773ff1848SBarry Smith `DMCreateDomainDecomposition()` 3528b3a6b972SJed Brown @*/ 3529d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookRemove(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx) 3530d71ae5a4SJacob Faibussowitsch { 3531b3a6b972SJed Brown DMSubDomainHookLink link, *p; 3532b3a6b972SJed Brown 3533b3a6b972SJed Brown PetscFunctionBegin; 3534b3a6b972SJed Brown PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3535b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3536b3a6b972SJed Brown if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3537b3a6b972SJed Brown link = *p; 3538b3a6b972SJed Brown *p = link->next; 35399566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3540b3a6b972SJed Brown break; 3541b3a6b972SJed Brown } 3542b3a6b972SJed Brown } 35433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3544b3a6b972SJed Brown } 3545b3a6b972SJed Brown 35465dbd56e3SPeter Brune /*@ 354773ff1848SBarry Smith DMSubDomainRestrict - restricts user-defined problem data to a subdomain `DM` by running hooks registered by `DMSubDomainHookAdd()` 35485dbd56e3SPeter Brune 35495dbd56e3SPeter Brune Collective if any hooks are 35505dbd56e3SPeter Brune 35514165533cSJose E. Roman Input Parameters: 3552a4e35b19SJacob Faibussowitsch + global - The global `DM` to use as a base 3553a4e35b19SJacob Faibussowitsch . oscatter - The scatter from domain global vector filling subdomain global vector with overlap 3554a4e35b19SJacob Faibussowitsch . gscatter - The scatter from domain global vector filling subdomain local vector with ghosts 3555a4e35b19SJacob Faibussowitsch - subdm - The subdomain `DM` to update 35565dbd56e3SPeter Brune 35575dbd56e3SPeter Brune Level: developer 35585dbd56e3SPeter Brune 355973ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMCreateDomainDecomposition()` 35605dbd56e3SPeter Brune @*/ 3561d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainRestrict(DM global, VecScatter oscatter, VecScatter gscatter, DM subdm) 3562d71ae5a4SJacob Faibussowitsch { 3563be081cd6SPeter Brune DMSubDomainHookLink link; 35645dbd56e3SPeter Brune 35655dbd56e3SPeter Brune PetscFunctionBegin; 3566be081cd6SPeter Brune for (link = global->subdomainhook; link; link = link->next) { 35671baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(global, oscatter, gscatter, subdm, link->ctx)); 35685dbd56e3SPeter Brune } 35693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35705dbd56e3SPeter Brune } 35715dbd56e3SPeter Brune 35725fe1f584SPeter Brune /*@ 3573bb7acecfSBarry Smith DMGetCoarsenLevel - Gets the number of coarsenings that have generated this `DM`. 35745fe1f584SPeter Brune 35755fe1f584SPeter Brune Not Collective 35765fe1f584SPeter Brune 35775fe1f584SPeter Brune Input Parameter: 3578bb7acecfSBarry Smith . dm - the `DM` object 35795fe1f584SPeter Brune 35805fe1f584SPeter Brune Output Parameter: 35816a7d9d85SPeter Brune . level - number of coarsenings 35825fe1f584SPeter Brune 35835fe1f584SPeter Brune Level: developer 35845fe1f584SPeter Brune 35851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMSetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 35865fe1f584SPeter Brune @*/ 3587d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarsenLevel(DM dm, PetscInt *level) 3588d71ae5a4SJacob Faibussowitsch { 35895fe1f584SPeter Brune PetscFunctionBegin; 35905fe1f584SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 35914f572ea9SToby Isaac PetscAssertPointer(level, 2); 35925fe1f584SPeter Brune *level = dm->leveldown; 35933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35945fe1f584SPeter Brune } 35955fe1f584SPeter Brune 35969a64c4a8SMatthew G. Knepley /*@ 3597bb7acecfSBarry Smith DMSetCoarsenLevel - Sets the number of coarsenings that have generated this `DM`. 35989a64c4a8SMatthew G. Knepley 359920f4b53cSBarry Smith Collective 36009a64c4a8SMatthew G. Knepley 36019a64c4a8SMatthew G. Knepley Input Parameters: 3602bb7acecfSBarry Smith + dm - the `DM` object 36039a64c4a8SMatthew G. Knepley - level - number of coarsenings 36049a64c4a8SMatthew G. Knepley 36059a64c4a8SMatthew G. Knepley Level: developer 36069a64c4a8SMatthew G. Knepley 3607bb7acecfSBarry Smith Note: 3608bb7acecfSBarry Smith This is rarely used directly, the information is automatically set when a `DM` is created with `DMCoarsen()` 3609bb7acecfSBarry Smith 361042747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 36119a64c4a8SMatthew G. Knepley @*/ 3612d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarsenLevel(DM dm, PetscInt level) 3613d71ae5a4SJacob Faibussowitsch { 36149a64c4a8SMatthew G. Knepley PetscFunctionBegin; 36159a64c4a8SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36169a64c4a8SMatthew G. Knepley dm->leveldown = level; 36173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36189a64c4a8SMatthew G. Knepley } 36199a64c4a8SMatthew G. Knepley 3620cc4c1da9SBarry Smith /*@ 3621bb7acecfSBarry Smith DMRefineHierarchy - Refines a `DM` object, all levels at once 362247c6ae99SBarry Smith 362320f4b53cSBarry Smith Collective 362447c6ae99SBarry Smith 3625d8d19677SJose E. Roman Input Parameters: 3626bb7acecfSBarry Smith + dm - the `DM` object 362747c6ae99SBarry Smith - nlevels - the number of levels of refinement 362847c6ae99SBarry Smith 362947c6ae99SBarry Smith Output Parameter: 3630bb7acecfSBarry Smith . dmf - the refined `DM` hierarchy 363147c6ae99SBarry Smith 363247c6ae99SBarry Smith Level: developer 363347c6ae99SBarry Smith 36341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMCoarsenHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 363547c6ae99SBarry Smith @*/ 3636d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHierarchy(DM dm, PetscInt nlevels, DM dmf[]) 3637d71ae5a4SJacob Faibussowitsch { 363847c6ae99SBarry Smith PetscFunctionBegin; 3639171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36407a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 36413ba16761SJacob Faibussowitsch if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS); 36424f572ea9SToby Isaac PetscAssertPointer(dmf, 3); 3643213acdd3SPierre Jolivet if (dm->ops->refine && !dm->ops->refinehierarchy) { 364447c6ae99SBarry Smith PetscInt i; 364547c6ae99SBarry Smith 36469566063dSJacob Faibussowitsch PetscCall(DMRefine(dm, PetscObjectComm((PetscObject)dm), &dmf[0])); 364748a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMRefine(dmf[i - 1], PetscObjectComm((PetscObject)dm), &dmf[i])); 3648213acdd3SPierre Jolivet } else PetscUseTypeMethod(dm, refinehierarchy, nlevels, dmf); 36493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 365047c6ae99SBarry Smith } 365147c6ae99SBarry Smith 3652cc4c1da9SBarry Smith /*@ 3653bb7acecfSBarry Smith DMCoarsenHierarchy - Coarsens a `DM` object, all levels at once 365447c6ae99SBarry Smith 365520f4b53cSBarry Smith Collective 365647c6ae99SBarry Smith 3657d8d19677SJose E. Roman Input Parameters: 3658bb7acecfSBarry Smith + dm - the `DM` object 365947c6ae99SBarry Smith - nlevels - the number of levels of coarsening 366047c6ae99SBarry Smith 366147c6ae99SBarry Smith Output Parameter: 3662bb7acecfSBarry Smith . dmc - the coarsened `DM` hierarchy 366347c6ae99SBarry Smith 366447c6ae99SBarry Smith Level: developer 366547c6ae99SBarry Smith 36661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMRefineHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 366747c6ae99SBarry Smith @*/ 3668d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHierarchy(DM dm, PetscInt nlevels, DM dmc[]) 3669d71ae5a4SJacob Faibussowitsch { 367047c6ae99SBarry Smith PetscFunctionBegin; 3671171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36727a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 36733ba16761SJacob Faibussowitsch if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS); 36744f572ea9SToby Isaac PetscAssertPointer(dmc, 3); 3675213acdd3SPierre Jolivet if (dm->ops->coarsen && !dm->ops->coarsenhierarchy) { 367647c6ae99SBarry Smith PetscInt i; 367747c6ae99SBarry Smith 36789566063dSJacob Faibussowitsch PetscCall(DMCoarsen(dm, PetscObjectComm((PetscObject)dm), &dmc[0])); 367948a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMCoarsen(dmc[i - 1], PetscObjectComm((PetscObject)dm), &dmc[i])); 3680213acdd3SPierre Jolivet } else PetscUseTypeMethod(dm, coarsenhierarchy, nlevels, dmc); 36813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 368247c6ae99SBarry Smith } 368347c6ae99SBarry Smith 36841a266240SBarry Smith /*@C 3685bb7acecfSBarry Smith DMSetApplicationContextDestroy - Sets a user function that will be called to destroy the application context when the `DM` is destroyed 36861a266240SBarry Smith 3687bb7acecfSBarry Smith Logically Collective if the function is collective 36881a266240SBarry Smith 36891a266240SBarry Smith Input Parameters: 3690bb7acecfSBarry Smith + dm - the `DM` object 36911a266240SBarry Smith - destroy - the destroy function 36921a266240SBarry Smith 36931a266240SBarry Smith Level: intermediate 36941a266240SBarry Smith 36951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 3696f07f9ceaSJed Brown @*/ 3697d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContextDestroy(DM dm, PetscErrorCode (*destroy)(void **)) 3698d71ae5a4SJacob Faibussowitsch { 36991a266240SBarry Smith PetscFunctionBegin; 3700171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37011a266240SBarry Smith dm->ctxdestroy = destroy; 37023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 37031a266240SBarry Smith } 37041a266240SBarry Smith 3705b07ff414SBarry Smith /*@ 3706bb7acecfSBarry Smith DMSetApplicationContext - Set a user context into a `DM` object 370747c6ae99SBarry Smith 370847c6ae99SBarry Smith Not Collective 370947c6ae99SBarry Smith 371047c6ae99SBarry Smith Input Parameters: 3711bb7acecfSBarry Smith + dm - the `DM` object 371247c6ae99SBarry Smith - ctx - the user context 371347c6ae99SBarry Smith 371447c6ae99SBarry Smith Level: intermediate 371547c6ae99SBarry Smith 3716e33b3f0fSStefano Zampini Notes: 371735cb6cd3SPierre Jolivet A user context is a way to pass problem specific information that is accessible whenever the `DM` is available 3718e33b3f0fSStefano Zampini In a multilevel solver, the user context is shared by all the `DM` in the hierarchy; it is thus not advisable 3719e33b3f0fSStefano Zampini to store objects that represent discretized quantities inside the context. 3720bb7acecfSBarry Smith 372160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 372247c6ae99SBarry Smith @*/ 3723d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContext(DM dm, void *ctx) 3724d71ae5a4SJacob Faibussowitsch { 372547c6ae99SBarry Smith PetscFunctionBegin; 3726171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 372747c6ae99SBarry Smith dm->ctx = ctx; 37283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 372947c6ae99SBarry Smith } 373047c6ae99SBarry Smith 373147c6ae99SBarry Smith /*@ 3732bb7acecfSBarry Smith DMGetApplicationContext - Gets a user context from a `DM` object 373347c6ae99SBarry Smith 373447c6ae99SBarry Smith Not Collective 373547c6ae99SBarry Smith 373647c6ae99SBarry Smith Input Parameter: 3737bb7acecfSBarry Smith . dm - the `DM` object 373847c6ae99SBarry Smith 373947c6ae99SBarry Smith Output Parameter: 374047c6ae99SBarry Smith . ctx - the user context 374147c6ae99SBarry Smith 374247c6ae99SBarry Smith Level: intermediate 374347c6ae99SBarry Smith 3744bb7acecfSBarry Smith Note: 374535cb6cd3SPierre Jolivet A user context is a way to pass problem specific information that is accessible whenever the `DM` is available 3746bb7acecfSBarry Smith 374742747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 374847c6ae99SBarry Smith @*/ 3749d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetApplicationContext(DM dm, void *ctx) 3750d71ae5a4SJacob Faibussowitsch { 375147c6ae99SBarry Smith PetscFunctionBegin; 3752171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37531b2093e4SBarry Smith *(void **)ctx = dm->ctx; 37543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 375547c6ae99SBarry Smith } 375647c6ae99SBarry Smith 375708da532bSDmitry Karpeev /*@C 3758bb7acecfSBarry Smith DMSetVariableBounds - sets a function to compute the lower and upper bound vectors for `SNESVI`. 375908da532bSDmitry Karpeev 376020f4b53cSBarry Smith Logically Collective 376108da532bSDmitry Karpeev 3762d8d19677SJose E. Roman Input Parameters: 376308da532bSDmitry Karpeev + dm - the DM object 376420f4b53cSBarry Smith - f - the function that computes variable bounds used by SNESVI (use `NULL` to cancel a previous function that was set) 376508da532bSDmitry Karpeev 376608da532bSDmitry Karpeev Level: intermediate 376708da532bSDmitry Karpeev 37681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`, 3769db781477SPatrick Sanan `DMSetJacobian()` 377008da532bSDmitry Karpeev @*/ 3771d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVariableBounds(DM dm, PetscErrorCode (*f)(DM, Vec, Vec)) 3772d71ae5a4SJacob Faibussowitsch { 377308da532bSDmitry Karpeev PetscFunctionBegin; 37745a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 377508da532bSDmitry Karpeev dm->ops->computevariablebounds = f; 37763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 377708da532bSDmitry Karpeev } 377808da532bSDmitry Karpeev 377908da532bSDmitry Karpeev /*@ 3780bb7acecfSBarry Smith DMHasVariableBounds - does the `DM` object have a variable bounds function? 378108da532bSDmitry Karpeev 378208da532bSDmitry Karpeev Not Collective 378308da532bSDmitry Karpeev 378408da532bSDmitry Karpeev Input Parameter: 3785bb7acecfSBarry Smith . dm - the `DM` object to destroy 378608da532bSDmitry Karpeev 378708da532bSDmitry Karpeev Output Parameter: 3788bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the variable bounds function exists 378908da532bSDmitry Karpeev 379008da532bSDmitry Karpeev Level: developer 379108da532bSDmitry Karpeev 37921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 379308da532bSDmitry Karpeev @*/ 3794d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasVariableBounds(DM dm, PetscBool *flg) 3795d71ae5a4SJacob Faibussowitsch { 379608da532bSDmitry Karpeev PetscFunctionBegin; 37975a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37984f572ea9SToby Isaac PetscAssertPointer(flg, 2); 379908da532bSDmitry Karpeev *flg = (dm->ops->computevariablebounds) ? PETSC_TRUE : PETSC_FALSE; 38003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 380108da532bSDmitry Karpeev } 380208da532bSDmitry Karpeev 3803cc4c1da9SBarry Smith /*@ 3804bb7acecfSBarry Smith DMComputeVariableBounds - compute variable bounds used by `SNESVI`. 380508da532bSDmitry Karpeev 380620f4b53cSBarry Smith Logically Collective 380708da532bSDmitry Karpeev 3808f899ff85SJose E. Roman Input Parameter: 3809bb7acecfSBarry Smith . dm - the `DM` object 381008da532bSDmitry Karpeev 381160225df5SJacob Faibussowitsch Output Parameters: 381208da532bSDmitry Karpeev + xl - lower bound 381308da532bSDmitry Karpeev - xu - upper bound 381408da532bSDmitry Karpeev 3815907376e6SBarry Smith Level: advanced 3816907376e6SBarry Smith 381720f4b53cSBarry Smith Note: 381895452b02SPatrick Sanan This is generally not called by users. It calls the function provided by the user with DMSetVariableBounds() 381908da532bSDmitry Karpeev 38201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 382108da532bSDmitry Karpeev @*/ 3822d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeVariableBounds(DM dm, Vec xl, Vec xu) 3823d71ae5a4SJacob Faibussowitsch { 382408da532bSDmitry Karpeev PetscFunctionBegin; 38255a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 382608da532bSDmitry Karpeev PetscValidHeaderSpecific(xl, VEC_CLASSID, 2); 38275a84ad33SLisandro Dalcin PetscValidHeaderSpecific(xu, VEC_CLASSID, 3); 3828dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, computevariablebounds, xl, xu); 38293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 383008da532bSDmitry Karpeev } 383108da532bSDmitry Karpeev 3832b0ae01b7SPeter Brune /*@ 3833bb7acecfSBarry Smith DMHasColoring - does the `DM` object have a method of providing a coloring? 3834b0ae01b7SPeter Brune 3835b0ae01b7SPeter Brune Not Collective 3836b0ae01b7SPeter Brune 3837b0ae01b7SPeter Brune Input Parameter: 3838b0ae01b7SPeter Brune . dm - the DM object 3839b0ae01b7SPeter Brune 3840b0ae01b7SPeter Brune Output Parameter: 3841bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateColoring()`. 3842b0ae01b7SPeter Brune 3843b0ae01b7SPeter Brune Level: developer 3844b0ae01b7SPeter Brune 38451cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateColoring()` 3846b0ae01b7SPeter Brune @*/ 3847d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasColoring(DM dm, PetscBool *flg) 3848d71ae5a4SJacob Faibussowitsch { 3849b0ae01b7SPeter Brune PetscFunctionBegin; 38505a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38514f572ea9SToby Isaac PetscAssertPointer(flg, 2); 3852b0ae01b7SPeter Brune *flg = (dm->ops->getcoloring) ? PETSC_TRUE : PETSC_FALSE; 38533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3854b0ae01b7SPeter Brune } 3855b0ae01b7SPeter Brune 38563ad4599aSBarry Smith /*@ 3857bb7acecfSBarry Smith DMHasCreateRestriction - does the `DM` object have a method of providing a restriction? 38583ad4599aSBarry Smith 38593ad4599aSBarry Smith Not Collective 38603ad4599aSBarry Smith 38613ad4599aSBarry Smith Input Parameter: 3862bb7acecfSBarry Smith . dm - the `DM` object 38633ad4599aSBarry Smith 38643ad4599aSBarry Smith Output Parameter: 3865bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateRestriction()`. 38663ad4599aSBarry Smith 38673ad4599aSBarry Smith Level: developer 38683ad4599aSBarry Smith 38691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateRestriction()`, `DMHasCreateInterpolation()`, `DMHasCreateInjection()` 38703ad4599aSBarry Smith @*/ 3871d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateRestriction(DM dm, PetscBool *flg) 3872d71ae5a4SJacob Faibussowitsch { 38733ad4599aSBarry Smith PetscFunctionBegin; 38745a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38754f572ea9SToby Isaac PetscAssertPointer(flg, 2); 38763ad4599aSBarry Smith *flg = (dm->ops->createrestriction) ? PETSC_TRUE : PETSC_FALSE; 38773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 38783ad4599aSBarry Smith } 38793ad4599aSBarry Smith 3880a7058e45SLawrence Mitchell /*@ 3881bb7acecfSBarry Smith DMHasCreateInjection - does the `DM` object have a method of providing an injection? 3882a7058e45SLawrence Mitchell 3883a7058e45SLawrence Mitchell Not Collective 3884a7058e45SLawrence Mitchell 3885a7058e45SLawrence Mitchell Input Parameter: 3886bb7acecfSBarry Smith . dm - the `DM` object 3887a7058e45SLawrence Mitchell 3888a7058e45SLawrence Mitchell Output Parameter: 3889bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateInjection()`. 3890a7058e45SLawrence Mitchell 3891a7058e45SLawrence Mitchell Level: developer 3892a7058e45SLawrence Mitchell 38931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateInjection()`, `DMHasCreateRestriction()`, `DMHasCreateInterpolation()` 3894a7058e45SLawrence Mitchell @*/ 3895d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateInjection(DM dm, PetscBool *flg) 3896d71ae5a4SJacob Faibussowitsch { 3897a7058e45SLawrence Mitchell PetscFunctionBegin; 38985a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38994f572ea9SToby Isaac PetscAssertPointer(flg, 2); 3900dbbe0bcdSBarry Smith if (dm->ops->hascreateinjection) PetscUseTypeMethod(dm, hascreateinjection, flg); 3901ad540459SPierre Jolivet else *flg = (dm->ops->createinjection) ? PETSC_TRUE : PETSC_FALSE; 39023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3903a7058e45SLawrence Mitchell } 3904a7058e45SLawrence Mitchell 39050298fd71SBarry Smith PetscFunctionList DMList = NULL; 3906264ace61SBarry Smith PetscBool DMRegisterAllCalled = PETSC_FALSE; 3907264ace61SBarry Smith 3908cc4c1da9SBarry Smith /*@ 3909bb7acecfSBarry Smith DMSetType - Builds a `DM`, for a particular `DM` implementation. 3910264ace61SBarry Smith 391120f4b53cSBarry Smith Collective 3912264ace61SBarry Smith 3913264ace61SBarry Smith Input Parameters: 3914bb7acecfSBarry Smith + dm - The `DM` object 3915bb7acecfSBarry Smith - method - The name of the `DMType`, for example `DMDA`, `DMPLEX` 3916264ace61SBarry Smith 3917264ace61SBarry Smith Options Database Key: 3918bb7acecfSBarry Smith . -dm_type <type> - Sets the `DM` type; use -help for a list of available types 3919264ace61SBarry Smith 3920264ace61SBarry Smith Level: intermediate 3921264ace61SBarry Smith 3922bb7acecfSBarry Smith Note: 39230462cc06SPierre Jolivet Of the `DM` is constructed by directly calling a function to construct a particular `DM`, for example, `DMDACreate2d()` or `DMPlexCreateBoxMesh()` 3924bb7acecfSBarry Smith 39251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMGetType()`, `DMCreate()`, `DMDACreate2d()` 3926264ace61SBarry Smith @*/ 3927d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetType(DM dm, DMType method) 3928d71ae5a4SJacob Faibussowitsch { 3929264ace61SBarry Smith PetscErrorCode (*r)(DM); 3930264ace61SBarry Smith PetscBool match; 3931264ace61SBarry Smith 3932264ace61SBarry Smith PetscFunctionBegin; 3933264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39349566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, method, &match)); 39353ba16761SJacob Faibussowitsch if (match) PetscFunctionReturn(PETSC_SUCCESS); 3936264ace61SBarry Smith 39379566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 39389566063dSJacob Faibussowitsch PetscCall(PetscFunctionListFind(DMList, method, &r)); 39397a8be351SBarry Smith PetscCheck(r, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown DM type: %s", method); 3940264ace61SBarry Smith 3941dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, destroy); 39429566063dSJacob Faibussowitsch PetscCall(PetscMemzero(dm->ops, sizeof(*dm->ops))); 39439566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)dm, method)); 39449566063dSJacob Faibussowitsch PetscCall((*r)(dm)); 39453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3946264ace61SBarry Smith } 3947264ace61SBarry Smith 3948cc4c1da9SBarry Smith /*@ 3949bb7acecfSBarry Smith DMGetType - Gets the `DM` type name (as a string) from the `DM`. 3950264ace61SBarry Smith 3951264ace61SBarry Smith Not Collective 3952264ace61SBarry Smith 3953264ace61SBarry Smith Input Parameter: 3954bb7acecfSBarry Smith . dm - The `DM` 3955264ace61SBarry Smith 3956264ace61SBarry Smith Output Parameter: 3957bb7acecfSBarry Smith . type - The `DMType` name 3958264ace61SBarry Smith 3959264ace61SBarry Smith Level: intermediate 3960264ace61SBarry Smith 39611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMSetType()`, `DMCreate()` 3962264ace61SBarry Smith @*/ 3963d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetType(DM dm, DMType *type) 3964d71ae5a4SJacob Faibussowitsch { 3965264ace61SBarry Smith PetscFunctionBegin; 3966264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39674f572ea9SToby Isaac PetscAssertPointer(type, 2); 39689566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 3969264ace61SBarry Smith *type = ((PetscObject)dm)->type_name; 39703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3971264ace61SBarry Smith } 3972264ace61SBarry Smith 39735d83a8b1SBarry Smith /*@ 3974bb7acecfSBarry Smith DMConvert - Converts a `DM` to another `DM`, either of the same or different type. 397567a56275SMatthew G Knepley 397620f4b53cSBarry Smith Collective 397767a56275SMatthew G Knepley 397867a56275SMatthew G Knepley Input Parameters: 3979bb7acecfSBarry Smith + dm - the `DM` 3980bb7acecfSBarry Smith - newtype - new `DM` type (use "same" for the same type) 398167a56275SMatthew G Knepley 398267a56275SMatthew G Knepley Output Parameter: 3983bb7acecfSBarry Smith . M - pointer to new `DM` 398467a56275SMatthew G Knepley 398520f4b53cSBarry Smith Level: intermediate 398620f4b53cSBarry Smith 398773ff1848SBarry Smith Note: 3988bb7acecfSBarry Smith Cannot be used to convert a sequential `DM` to a parallel or a parallel to sequential, 3989bb7acecfSBarry Smith the MPI communicator of the generated `DM` is always the same as the communicator 3990bb7acecfSBarry Smith of the input `DM`. 399167a56275SMatthew G Knepley 39921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMCreate()`, `DMClone()` 399367a56275SMatthew G Knepley @*/ 3994d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConvert(DM dm, DMType newtype, DM *M) 3995d71ae5a4SJacob Faibussowitsch { 399667a56275SMatthew G Knepley DM B; 399767a56275SMatthew G Knepley char convname[256]; 3998c067b6caSMatthew G. Knepley PetscBool sametype /*, issame */; 399967a56275SMatthew G Knepley 400067a56275SMatthew G Knepley PetscFunctionBegin; 400167a56275SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 400267a56275SMatthew G Knepley PetscValidType(dm, 1); 40034f572ea9SToby Isaac PetscAssertPointer(M, 3); 40049566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, newtype, &sametype)); 40059566063dSJacob Faibussowitsch /* PetscCall(PetscStrcmp(newtype, "same", &issame)); */ 4006c067b6caSMatthew G. Knepley if (sametype) { 4007c067b6caSMatthew G. Knepley *M = dm; 40089566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 40093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4010c067b6caSMatthew G. Knepley } else { 40110298fd71SBarry Smith PetscErrorCode (*conv)(DM, DMType, DM *) = NULL; 401267a56275SMatthew G Knepley 401367a56275SMatthew G Knepley /* 401467a56275SMatthew G Knepley Order of precedence: 401567a56275SMatthew G Knepley 1) See if a specialized converter is known to the current DM. 401667a56275SMatthew G Knepley 2) See if a specialized converter is known to the desired DM class. 401767a56275SMatthew G Knepley 3) See if a good general converter is registered for the desired class 401867a56275SMatthew G Knepley 4) See if a good general converter is known for the current matrix. 401967a56275SMatthew G Knepley 5) Use a really basic converter. 402067a56275SMatthew G Knepley */ 402167a56275SMatthew G Knepley 402267a56275SMatthew G Knepley /* 1) See if a specialized converter is known to the current DM and the desired class */ 40239566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 40249566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 40259566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 40269566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 40279566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 40289566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)dm, convname, &conv)); 402967a56275SMatthew G Knepley if (conv) goto foundconv; 403067a56275SMatthew G Knepley 403167a56275SMatthew G Knepley /* 2) See if a specialized converter is known to the desired DM class. */ 40329566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &B)); 40339566063dSJacob Faibussowitsch PetscCall(DMSetType(B, newtype)); 40349566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 40359566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 40369566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 40379566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 40389566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 40399566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)B, convname, &conv)); 404067a56275SMatthew G Knepley if (conv) { 40419566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 404267a56275SMatthew G Knepley goto foundconv; 404367a56275SMatthew G Knepley } 404467a56275SMatthew G Knepley 404567a56275SMatthew G Knepley #if 0 404667a56275SMatthew G Knepley /* 3) See if a good general converter is registered for the desired class */ 404767a56275SMatthew G Knepley conv = B->ops->convertfrom; 40489566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 404967a56275SMatthew G Knepley if (conv) goto foundconv; 405067a56275SMatthew G Knepley 405167a56275SMatthew G Knepley /* 4) See if a good general converter is known for the current matrix */ 405267a56275SMatthew G Knepley if (dm->ops->convert) { 405367a56275SMatthew G Knepley conv = dm->ops->convert; 405467a56275SMatthew G Knepley } 405567a56275SMatthew G Knepley if (conv) goto foundconv; 405667a56275SMatthew G Knepley #endif 405767a56275SMatthew G Knepley 405867a56275SMatthew G Knepley /* 5) Use a really basic converter. */ 405998921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No conversion possible between DM types %s and %s", ((PetscObject)dm)->type_name, newtype); 406067a56275SMatthew G Knepley 406167a56275SMatthew G Knepley foundconv: 40629566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Convert, dm, 0, 0, 0)); 40639566063dSJacob Faibussowitsch PetscCall((*conv)(dm, newtype, M)); 406412fa691eSMatthew G. Knepley /* Things that are independent of DM type: We should consult DMClone() here */ 406590b157c4SStefano Zampini { 40664fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 40676858538eSMatthew G. Knepley 40684fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 40694fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*M, maxCell, Lstart, L)); 4070c8a6034eSMark (*M)->prealloc_only = dm->prealloc_only; 40719566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->vectype)); 40729566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*M)->vectype)); 40739566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->mattype)); 40749566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*M)->mattype)); 407512fa691eSMatthew G. Knepley } 40769566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Convert, dm, 0, 0, 0)); 407767a56275SMatthew G Knepley } 40789566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)*M)); 40793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 408067a56275SMatthew G Knepley } 4081264ace61SBarry Smith 4082264ace61SBarry Smith /*--------------------------------------------------------------------------------------------------------------------*/ 4083264ace61SBarry Smith 4084264ace61SBarry Smith /*@C 4085bb7acecfSBarry Smith DMRegister - Adds a new `DM` type implementation 40861c84c290SBarry Smith 4087cc4c1da9SBarry Smith Not Collective, No Fortran Support 40881c84c290SBarry Smith 40891c84c290SBarry Smith Input Parameters: 409020f4b53cSBarry Smith + sname - The name of a new user-defined creation routine 409120f4b53cSBarry Smith - function - The creation routine itself 409220f4b53cSBarry Smith 409320f4b53cSBarry Smith Level: advanced 40941c84c290SBarry Smith 409573ff1848SBarry Smith Note: 409620f4b53cSBarry Smith `DMRegister()` may be called multiple times to add several user-defined `DM`s 40971c84c290SBarry Smith 409860225df5SJacob Faibussowitsch Example Usage: 40991c84c290SBarry Smith .vb 4100bdf89e91SBarry Smith DMRegister("my_da", MyDMCreate); 41011c84c290SBarry Smith .ve 41021c84c290SBarry Smith 410320f4b53cSBarry Smith Then, your `DM` type can be chosen with the procedural interface via 41041c84c290SBarry Smith .vb 41051c84c290SBarry Smith DMCreate(MPI_Comm, DM *); 41061c84c290SBarry Smith DMSetType(DM,"my_da"); 41071c84c290SBarry Smith .ve 41081c84c290SBarry Smith or at runtime via the option 41091c84c290SBarry Smith .vb 41101c84c290SBarry Smith -da_type my_da 41111c84c290SBarry Smith .ve 4112264ace61SBarry Smith 41131cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMSetType()`, `DMRegisterAll()`, `DMRegisterDestroy()` 4114264ace61SBarry Smith @*/ 4115d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRegister(const char sname[], PetscErrorCode (*function)(DM)) 4116d71ae5a4SJacob Faibussowitsch { 4117264ace61SBarry Smith PetscFunctionBegin; 41189566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 41199566063dSJacob Faibussowitsch PetscCall(PetscFunctionListAdd(&DMList, sname, function)); 41203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4121264ace61SBarry Smith } 4122264ace61SBarry Smith 4123ffeef943SBarry Smith /*@ 4124bb7acecfSBarry Smith DMLoad - Loads a DM that has been stored in binary with `DMView()`. 4125b859378eSBarry Smith 412620f4b53cSBarry Smith Collective 4127b859378eSBarry Smith 4128b859378eSBarry Smith Input Parameters: 4129bb7acecfSBarry Smith + newdm - the newly loaded `DM`, this needs to have been created with `DMCreate()` or 4130bb7acecfSBarry Smith some related function before a call to `DMLoad()`. 4131bb7acecfSBarry Smith - viewer - binary file viewer, obtained from `PetscViewerBinaryOpen()` or 4132bb7acecfSBarry Smith `PETSCVIEWERHDF5` file viewer, obtained from `PetscViewerHDF5Open()` 4133b859378eSBarry Smith 4134b859378eSBarry Smith Level: intermediate 4135b859378eSBarry Smith 4136b859378eSBarry Smith Notes: 413755849f57SBarry Smith The type is determined by the data in the file, any type set into the DM before this call is ignored. 4138b859378eSBarry Smith 4139bb7acecfSBarry Smith Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` format, one can save multiple `DMPLEX` 4140bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 4141bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 4142cd7e8a5eSksagiyam 41431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewerBinaryOpen()`, `DMView()`, `MatLoad()`, `VecLoad()` 4144b859378eSBarry Smith @*/ 4145d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLoad(DM newdm, PetscViewer viewer) 4146d71ae5a4SJacob Faibussowitsch { 41479331c7a4SMatthew G. Knepley PetscBool isbinary, ishdf5; 4148b859378eSBarry Smith 4149b859378eSBarry Smith PetscFunctionBegin; 4150b859378eSBarry Smith PetscValidHeaderSpecific(newdm, DM_CLASSID, 1); 4151b859378eSBarry Smith PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 41529566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckReadable(viewer)); 41539566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 41549566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 41559566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Load, viewer, 0, 0, 0)); 41569331c7a4SMatthew G. Knepley if (isbinary) { 41579331c7a4SMatthew G. Knepley PetscInt classid; 41589331c7a4SMatthew G. Knepley char type[256]; 4159b859378eSBarry Smith 41609566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &classid, 1, NULL, PETSC_INT)); 41617a8be351SBarry Smith PetscCheck(classid == DM_FILE_CLASSID, PetscObjectComm((PetscObject)newdm), PETSC_ERR_ARG_WRONG, "Not DM next in file, classid found %d", (int)classid); 41629566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, type, 256, NULL, PETSC_CHAR)); 41639566063dSJacob Faibussowitsch PetscCall(DMSetType(newdm, type)); 4164dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 41659331c7a4SMatthew G. Knepley } else if (ishdf5) { 4166dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 41679331c7a4SMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerBinaryOpen() or PetscViewerHDF5Open()"); 41689566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Load, viewer, 0, 0, 0)); 41693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4170b859378eSBarry Smith } 4171b859378eSBarry Smith 41727da65231SMatthew G Knepley /******************************** FEM Support **********************************/ 41737da65231SMatthew G Knepley 41742ecf6ec3SMatthew G. Knepley PetscErrorCode DMPrintCellIndices(PetscInt c, const char name[], PetscInt len, const PetscInt x[]) 41752ecf6ec3SMatthew G. Knepley { 41762ecf6ec3SMatthew G. Knepley PetscInt f; 41772ecf6ec3SMatthew G. Knepley 41782ecf6ec3SMatthew G. Knepley PetscFunctionBegin; 41792ecf6ec3SMatthew G. Knepley PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 41802ecf6ec3SMatthew G. Knepley for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %" PetscInt_FMT " |\n", x[f])); 41812ecf6ec3SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 41822ecf6ec3SMatthew G. Knepley } 41832ecf6ec3SMatthew G. Knepley 4184d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellVector(PetscInt c, const char name[], PetscInt len, const PetscScalar x[]) 4185d71ae5a4SJacob Faibussowitsch { 41861d47ebbbSSatish Balay PetscInt f; 41871b30c384SMatthew G Knepley 41887da65231SMatthew G Knepley PetscFunctionBegin; 418963a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 419048a46eb9SPierre Jolivet for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %g |\n", (double)PetscRealPart(x[f]))); 41913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 41927da65231SMatthew G Knepley } 41937da65231SMatthew G Knepley 41945962854dSMatthew G. Knepley PetscErrorCode DMPrintCellVectorReal(PetscInt c, const char name[], PetscInt len, const PetscReal x[]) 41955962854dSMatthew G. Knepley { 41965962854dSMatthew G. Knepley PetscInt f; 41975962854dSMatthew G. Knepley 41985962854dSMatthew G. Knepley PetscFunctionBegin; 41995962854dSMatthew G. Knepley PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 42005962854dSMatthew G. Knepley for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %g |\n", (double)x[f])); 42015962854dSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 42025962854dSMatthew G. Knepley } 42035962854dSMatthew G. Knepley 4204d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellMatrix(PetscInt c, const char name[], PetscInt rows, PetscInt cols, const PetscScalar A[]) 4205d71ae5a4SJacob Faibussowitsch { 42061b30c384SMatthew G Knepley PetscInt f, g; 42077da65231SMatthew G Knepley 42087da65231SMatthew G Knepley PetscFunctionBegin; 420963a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 42101d47ebbbSSatish Balay for (f = 0; f < rows; ++f) { 42119566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |")); 421248a46eb9SPierre Jolivet for (g = 0; g < cols; ++g) PetscCall(PetscPrintf(PETSC_COMM_SELF, " % 9.5g", (double)PetscRealPart(A[f * cols + g]))); 42139566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |\n")); 42147da65231SMatthew G Knepley } 42153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42167da65231SMatthew G Knepley } 4217e7c4fc90SDmitry Karpeev 4218d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintLocalVec(DM dm, const char name[], PetscReal tol, Vec X) 4219d71ae5a4SJacob Faibussowitsch { 42200c5b8624SToby Isaac PetscInt localSize, bs; 42210c5b8624SToby Isaac PetscMPIInt size; 42220c5b8624SToby Isaac Vec x, xglob; 42230c5b8624SToby Isaac const PetscScalar *xarray; 4224e759306cSMatthew G. Knepley 4225e759306cSMatthew G. Knepley PetscFunctionBegin; 42269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 42279566063dSJacob Faibussowitsch PetscCall(VecDuplicate(X, &x)); 42289566063dSJacob Faibussowitsch PetscCall(VecCopy(X, x)); 422993ec0da9SPierre Jolivet PetscCall(VecFilter(x, tol)); 42309566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "%s:\n", name)); 42310c5b8624SToby Isaac if (size > 1) { 42329566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(x, &localSize)); 42339566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xarray)); 42349566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize(x, &bs)); 42359566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)dm), bs, localSize, PETSC_DETERMINE, xarray, &xglob)); 42360c5b8624SToby Isaac } else { 42370c5b8624SToby Isaac xglob = x; 42380c5b8624SToby Isaac } 42399566063dSJacob Faibussowitsch PetscCall(VecView(xglob, PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)dm)))); 42400c5b8624SToby Isaac if (size > 1) { 42419566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xglob)); 42429566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xarray)); 42430c5b8624SToby Isaac } 42449566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 42453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4246e759306cSMatthew G. Knepley } 4247e759306cSMatthew G. Knepley 424888ed4aceSMatthew G Knepley /*@ 4249bb7acecfSBarry Smith DMGetSection - Get the `PetscSection` encoding the local data layout for the `DM`. This is equivalent to `DMGetLocalSection()`. Deprecated in v3.12 4250061576a5SJed Brown 4251061576a5SJed Brown Input Parameter: 4252bb7acecfSBarry Smith . dm - The `DM` 4253061576a5SJed Brown 4254061576a5SJed Brown Output Parameter: 4255bb7acecfSBarry Smith . section - The `PetscSection` 4256061576a5SJed Brown 425720f4b53cSBarry Smith Options Database Key: 4258bb7acecfSBarry Smith . -dm_petscsection_view - View the `PetscSection` created by the `DM` 4259061576a5SJed Brown 4260061576a5SJed Brown Level: advanced 4261061576a5SJed Brown 4262061576a5SJed Brown Notes: 4263bb7acecfSBarry Smith Use `DMGetLocalSection()` in new code. 4264061576a5SJed Brown 4265bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 4266061576a5SJed Brown 42671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetLocalSection()`, `DMSetLocalSection()`, `DMGetGlobalSection()` 4268061576a5SJed Brown @*/ 4269d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSection(DM dm, PetscSection *section) 4270d71ae5a4SJacob Faibussowitsch { 4271061576a5SJed Brown PetscFunctionBegin; 42729566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, section)); 42733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4274061576a5SJed Brown } 4275061576a5SJed Brown 4276061576a5SJed Brown /*@ 4277bb7acecfSBarry Smith DMGetLocalSection - Get the `PetscSection` encoding the local data layout for the `DM`. 427888ed4aceSMatthew G Knepley 427988ed4aceSMatthew G Knepley Input Parameter: 4280bb7acecfSBarry Smith . dm - The `DM` 428188ed4aceSMatthew G Knepley 428288ed4aceSMatthew G Knepley Output Parameter: 4283bb7acecfSBarry Smith . section - The `PetscSection` 428488ed4aceSMatthew G Knepley 428520f4b53cSBarry Smith Options Database Key: 4286bb7acecfSBarry Smith . -dm_petscsection_view - View the section created by the `DM` 4287e5893cccSMatthew G. Knepley 428888ed4aceSMatthew G Knepley Level: intermediate 428988ed4aceSMatthew G Knepley 4290bb7acecfSBarry Smith Note: 4291bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 429288ed4aceSMatthew G Knepley 42931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetGlobalSection()` 429488ed4aceSMatthew G Knepley @*/ 4295d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalSection(DM dm, PetscSection *section) 4296d71ae5a4SJacob Faibussowitsch { 429788ed4aceSMatthew G Knepley PetscFunctionBegin; 429888ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 42994f572ea9SToby Isaac PetscAssertPointer(section, 2); 43001bb6d2a8SBarry Smith if (!dm->localSection && dm->ops->createlocalsection) { 4301e5e52638SMatthew G. Knepley PetscInt d; 4302e5e52638SMatthew G. Knepley 430345480ffeSMatthew G. Knepley if (dm->setfromoptionscalled) { 430445480ffeSMatthew G. Knepley PetscObject obj = (PetscObject)dm; 430545480ffeSMatthew G. Knepley PetscViewer viewer; 430645480ffeSMatthew G. Knepley PetscViewerFormat format; 430745480ffeSMatthew G. Knepley PetscBool flg; 430845480ffeSMatthew G. Knepley 4309648c30bcSBarry Smith PetscCall(PetscOptionsCreateViewer(PetscObjectComm(obj), obj->options, obj->prefix, "-dm_petscds_view", &viewer, &format, &flg)); 43109566063dSJacob Faibussowitsch if (flg) PetscCall(PetscViewerPushFormat(viewer, format)); 431145480ffeSMatthew G. Knepley for (d = 0; d < dm->Nds; ++d) { 43129566063dSJacob Faibussowitsch PetscCall(PetscDSSetFromOptions(dm->probs[d].ds)); 43139566063dSJacob Faibussowitsch if (flg) PetscCall(PetscDSView(dm->probs[d].ds, viewer)); 431445480ffeSMatthew G. Knepley } 431545480ffeSMatthew G. Knepley if (flg) { 43169566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 43179566063dSJacob Faibussowitsch PetscCall(PetscViewerPopFormat(viewer)); 4318648c30bcSBarry Smith PetscCall(PetscViewerDestroy(&viewer)); 431945480ffeSMatthew G. Knepley } 432045480ffeSMatthew G. Knepley } 4321dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalsection); 43229566063dSJacob Faibussowitsch if (dm->localSection) PetscCall(PetscObjectViewFromOptions((PetscObject)dm->localSection, NULL, "-dm_petscsection_view")); 43232f0f8703SMatthew G. Knepley } 43241bb6d2a8SBarry Smith *section = dm->localSection; 43253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 432688ed4aceSMatthew G Knepley } 432788ed4aceSMatthew G Knepley 432888ed4aceSMatthew G Knepley /*@ 4329bb7acecfSBarry Smith DMSetSection - Set the `PetscSection` encoding the local data layout for the `DM`. This is equivalent to `DMSetLocalSection()`. Deprecated in v3.12 4330061576a5SJed Brown 4331061576a5SJed Brown Input Parameters: 4332bb7acecfSBarry Smith + dm - The `DM` 4333bb7acecfSBarry Smith - section - The `PetscSection` 4334061576a5SJed Brown 4335061576a5SJed Brown Level: advanced 4336061576a5SJed Brown 4337061576a5SJed Brown Notes: 4338bb7acecfSBarry Smith Use `DMSetLocalSection()` in new code. 4339061576a5SJed Brown 4340bb7acecfSBarry Smith Any existing `PetscSection` will be destroyed 4341061576a5SJed Brown 43421cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()`, `DMSetGlobalSection()` 4343061576a5SJed Brown @*/ 4344d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSection(DM dm, PetscSection section) 4345d71ae5a4SJacob Faibussowitsch { 4346061576a5SJed Brown PetscFunctionBegin; 43479566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm, section)); 43483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4349061576a5SJed Brown } 4350061576a5SJed Brown 4351061576a5SJed Brown /*@ 4352bb7acecfSBarry Smith DMSetLocalSection - Set the `PetscSection` encoding the local data layout for the `DM`. 435388ed4aceSMatthew G Knepley 435488ed4aceSMatthew G Knepley Input Parameters: 4355bb7acecfSBarry Smith + dm - The `DM` 4356bb7acecfSBarry Smith - section - The `PetscSection` 435788ed4aceSMatthew G Knepley 435888ed4aceSMatthew G Knepley Level: intermediate 435988ed4aceSMatthew G Knepley 4360bb7acecfSBarry Smith Note: 4361bb7acecfSBarry Smith Any existing Section will be destroyed 436288ed4aceSMatthew G Knepley 43631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMSetGlobalSection()` 436488ed4aceSMatthew G Knepley @*/ 4365d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLocalSection(DM dm, PetscSection section) 4366d71ae5a4SJacob Faibussowitsch { 4367c473ab19SMatthew G. Knepley PetscInt numFields = 0; 4368af122d2aSMatthew G Knepley PetscInt f; 436988ed4aceSMatthew G Knepley 437088ed4aceSMatthew G Knepley PetscFunctionBegin; 437188ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4372b9d85ea2SLisandro Dalcin if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 43739566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 43749566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->localSection)); 43751bb6d2a8SBarry Smith dm->localSection = section; 43769566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(dm->localSection, &numFields)); 4377af122d2aSMatthew G Knepley if (numFields) { 43789566063dSJacob Faibussowitsch PetscCall(DMSetNumFields(dm, numFields)); 4379af122d2aSMatthew G Knepley for (f = 0; f < numFields; ++f) { 43800f21e855SMatthew G. Knepley PetscObject disc; 4381af122d2aSMatthew G Knepley const char *name; 4382af122d2aSMatthew G Knepley 43839566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(dm->localSection, f, &name)); 43849566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &disc)); 43859566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName(disc, name)); 4386af122d2aSMatthew G Knepley } 4387af122d2aSMatthew G Knepley } 438850350c8eSStefano Zampini /* The global section and the SectionSF will be rebuilt 438950350c8eSStefano Zampini in the next call to DMGetGlobalSection() and DMGetSectionSF(). */ 43909566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 439150350c8eSStefano Zampini PetscCall(PetscSFDestroy(&dm->sectionSF)); 439252947b74SStefano Zampini PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 439350350c8eSStefano Zampini 439450350c8eSStefano Zampini /* Clear scratch vectors */ 439550350c8eSStefano Zampini PetscCall(DMClearGlobalVectors(dm)); 439650350c8eSStefano Zampini PetscCall(DMClearLocalVectors(dm)); 439750350c8eSStefano Zampini PetscCall(DMClearNamedGlobalVectors(dm)); 439850350c8eSStefano Zampini PetscCall(DMClearNamedLocalVectors(dm)); 43993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 440088ed4aceSMatthew G Knepley } 440188ed4aceSMatthew G Knepley 4402adc21957SMatthew G. Knepley /*@C 4403d8b4a066SPierre Jolivet DMCreateSectionPermutation - Create a permutation of the `PetscSection` chart and optionally a block structure. 4404adc21957SMatthew G. Knepley 4405adc21957SMatthew G. Knepley Input Parameter: 4406adc21957SMatthew G. Knepley . dm - The `DM` 4407adc21957SMatthew G. Knepley 44089cde84edSJose E. Roman Output Parameters: 4409adc21957SMatthew G. Knepley + perm - A permutation of the mesh points in the chart 4410b6971eaeSBarry Smith - blockStarts - A high bit is set for the point that begins every block, or `NULL` for default blocking 4411adc21957SMatthew G. Knepley 4412adc21957SMatthew G. Knepley Level: developer 4413adc21957SMatthew G. Knepley 4414adc21957SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMGetGlobalSection()` 4415adc21957SMatthew G. Knepley @*/ 4416adc21957SMatthew G. Knepley PetscErrorCode DMCreateSectionPermutation(DM dm, IS *perm, PetscBT *blockStarts) 4417adc21957SMatthew G. Knepley { 4418adc21957SMatthew G. Knepley PetscFunctionBegin; 4419adc21957SMatthew G. Knepley *perm = NULL; 4420adc21957SMatthew G. Knepley *blockStarts = NULL; 4421adc21957SMatthew G. Knepley PetscTryTypeMethod(dm, createsectionpermutation, perm, blockStarts); 4422adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 4423adc21957SMatthew G. Knepley } 4424adc21957SMatthew G. Knepley 44259435951eSToby Isaac /*@ 4426bb7acecfSBarry Smith DMGetDefaultConstraints - Get the `PetscSection` and `Mat` that specify the local constraint interpolation. See `DMSetDefaultConstraints()` for a description of the purpose of constraint interpolation. 44279435951eSToby Isaac 442820f4b53cSBarry Smith not Collective 4429e228b242SToby Isaac 44309435951eSToby Isaac Input Parameter: 4431bb7acecfSBarry Smith . dm - The `DM` 44329435951eSToby Isaac 4433d8d19677SJose E. Roman Output Parameters: 443420f4b53cSBarry Smith + section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Returns `NULL` if there are no local constraints. 443520f4b53cSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section. Returns `NULL` if there are no local constraints. 443679769bd5SJed Brown - bias - Vector containing bias to be added to constrained dofs 44379435951eSToby Isaac 44389435951eSToby Isaac Level: advanced 44399435951eSToby Isaac 4440bb7acecfSBarry Smith Note: 4441bb7acecfSBarry Smith This gets borrowed references, so the user should not destroy the `PetscSection`, `Mat`, or `Vec`. 44429435951eSToby Isaac 44431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDefaultConstraints()` 44449435951eSToby Isaac @*/ 4445d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDefaultConstraints(DM dm, PetscSection *section, Mat *mat, Vec *bias) 4446d71ae5a4SJacob Faibussowitsch { 44479435951eSToby Isaac PetscFunctionBegin; 44489435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4449dbbe0bcdSBarry Smith if (!dm->defaultConstraint.section && !dm->defaultConstraint.mat && dm->ops->createdefaultconstraints) PetscUseTypeMethod(dm, createdefaultconstraints); 44503b8ba7d1SJed Brown if (section) *section = dm->defaultConstraint.section; 44513b8ba7d1SJed Brown if (mat) *mat = dm->defaultConstraint.mat; 445279769bd5SJed Brown if (bias) *bias = dm->defaultConstraint.bias; 44533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44549435951eSToby Isaac } 44559435951eSToby Isaac 44569435951eSToby Isaac /*@ 4457bb7acecfSBarry Smith DMSetDefaultConstraints - Set the `PetscSection` and `Mat` that specify the local constraint interpolation. 44589435951eSToby Isaac 445920f4b53cSBarry Smith Collective 4460e228b242SToby Isaac 44619435951eSToby Isaac Input Parameters: 4462bb7acecfSBarry Smith + dm - The `DM` 4463bb7acecfSBarry Smith . section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 446420f4b53cSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section: `NULL` indicates no constraints. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 446520f4b53cSBarry Smith - bias - A bias vector to be added to constrained values in the local vector. `NULL` indicates no bias. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 44669435951eSToby Isaac 44679435951eSToby Isaac Level: advanced 44689435951eSToby Isaac 446920f4b53cSBarry Smith Notes: 447020f4b53cSBarry Smith If a constraint matrix is specified, then it is applied during `DMGlobalToLocalEnd()` when mode is `INSERT_VALUES`, `INSERT_BC_VALUES`, or `INSERT_ALL_VALUES`. Without a constraint matrix, the local vector l returned by `DMGlobalToLocalEnd()` contains values that have been scattered from a global vector without modification; with a constraint matrix A, l is modified by computing c = A * l + bias, l[s[i]] = c[i], where the scatter s is defined by the `PetscSection` returned by `DMGetDefaultConstraints()`. 447120f4b53cSBarry Smith 447220f4b53cSBarry Smith If a constraint matrix is specified, then its adjoint is applied during `DMLocalToGlobalBegin()` when mode is `ADD_VALUES`, `ADD_BC_VALUES`, or `ADD_ALL_VALUES`. Without a constraint matrix, the local vector l is accumulated into a global vector without modification; with a constraint matrix A, l is first modified by computing c[i] = l[s[i]], l[s[i]] = 0, l = l + A'*c, which is the adjoint of the operation described above. Any bias, if specified, is ignored when accumulating. 447320f4b53cSBarry Smith 4474bb7acecfSBarry Smith This increments the references of the `PetscSection`, `Mat`, and `Vec`, so they user can destroy them. 44759435951eSToby Isaac 44761cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDefaultConstraints()` 44779435951eSToby Isaac @*/ 4478d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDefaultConstraints(DM dm, PetscSection section, Mat mat, Vec bias) 4479d71ae5a4SJacob Faibussowitsch { 4480e228b242SToby Isaac PetscMPIInt result; 44819435951eSToby Isaac 44829435951eSToby Isaac PetscFunctionBegin; 44839435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4484e228b242SToby Isaac if (section) { 4485e228b242SToby Isaac PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 44869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)section), &result)); 44877a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint section must have local communicator"); 4488e228b242SToby Isaac } 4489e228b242SToby Isaac if (mat) { 4490e228b242SToby Isaac PetscValidHeaderSpecific(mat, MAT_CLASSID, 3); 44919566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)mat), &result)); 44927a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint matrix must have local communicator"); 4493e228b242SToby Isaac } 449479769bd5SJed Brown if (bias) { 449579769bd5SJed Brown PetscValidHeaderSpecific(bias, VEC_CLASSID, 4); 44969566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)bias), &result)); 449779769bd5SJed Brown PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint bias must have local communicator"); 449879769bd5SJed Brown } 44999566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 45009566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->defaultConstraint.section)); 45013b8ba7d1SJed Brown dm->defaultConstraint.section = section; 45029566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mat)); 45039566063dSJacob Faibussowitsch PetscCall(MatDestroy(&dm->defaultConstraint.mat)); 45043b8ba7d1SJed Brown dm->defaultConstraint.mat = mat; 45059566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)bias)); 45069566063dSJacob Faibussowitsch PetscCall(VecDestroy(&dm->defaultConstraint.bias)); 450779769bd5SJed Brown dm->defaultConstraint.bias = bias; 45083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 45099435951eSToby Isaac } 45109435951eSToby Isaac 4511497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 4512507e4973SMatthew G. Knepley /* 4513bb7acecfSBarry Smith DMDefaultSectionCheckConsistency - Check the consistentcy of the global and local sections. Generates and error if they are not consistent. 4514507e4973SMatthew G. Knepley 4515507e4973SMatthew G. Knepley Input Parameters: 4516bb7acecfSBarry Smith + dm - The `DM` 4517bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4518bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 4519507e4973SMatthew G. Knepley 4520507e4973SMatthew G. Knepley Level: intermediate 4521507e4973SMatthew G. Knepley 45221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()` 4523507e4973SMatthew G. Knepley */ 4524d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(DM dm, PetscSection localSection, PetscSection globalSection) 4525d71ae5a4SJacob Faibussowitsch { 4526507e4973SMatthew G. Knepley MPI_Comm comm; 4527507e4973SMatthew G. Knepley PetscLayout layout; 4528507e4973SMatthew G. Knepley const PetscInt *ranges; 4529507e4973SMatthew G. Knepley PetscInt pStart, pEnd, p, nroots; 4530507e4973SMatthew G. Knepley PetscMPIInt size, rank; 4531507e4973SMatthew G. Knepley PetscBool valid = PETSC_TRUE, gvalid; 4532507e4973SMatthew G. Knepley 4533507e4973SMatthew G. Knepley PetscFunctionBegin; 45349566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 4535507e4973SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 45379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 45389566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(globalSection, &pStart, &pEnd)); 45399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &nroots)); 45409566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &layout)); 45419566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(layout, 1)); 45429566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(layout, nroots)); 45439566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(layout)); 45449566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(layout, &ranges)); 4545507e4973SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 4546f741bcd2SMatthew G. Knepley PetscInt dof, cdof, off, gdof, gcdof, goff, gsize, d; 4547507e4973SMatthew G. Knepley 45489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(localSection, p, &dof)); 45499566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(localSection, p, &off)); 45509566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(localSection, p, &cdof)); 45519566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(globalSection, p, &gdof)); 45529566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(globalSection, p, &gcdof)); 45539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalSection, p, &goff)); 4554507e4973SMatthew G. Knepley if (!gdof) continue; /* Censored point */ 45559371c9d4SSatish Balay if ((gdof < 0 ? -(gdof + 1) : gdof) != dof) { 45569371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local dof %" PetscInt_FMT "\n", rank, gdof, p, dof)); 45579371c9d4SSatish Balay valid = PETSC_FALSE; 45589371c9d4SSatish Balay } 45599371c9d4SSatish Balay if (gcdof && (gcdof != cdof)) { 45609371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global constraints %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local constraints %" PetscInt_FMT "\n", rank, gcdof, p, cdof)); 45619371c9d4SSatish Balay valid = PETSC_FALSE; 45629371c9d4SSatish Balay } 4563507e4973SMatthew G. Knepley if (gdof < 0) { 4564507e4973SMatthew G. Knepley gsize = gdof < 0 ? -(gdof + 1) - gcdof : gdof - gcdof; 4565507e4973SMatthew G. Knepley for (d = 0; d < gsize; ++d) { 4566507e4973SMatthew G. Knepley PetscInt offset = -(goff + 1) + d, r; 4567507e4973SMatthew G. Knepley 45689566063dSJacob Faibussowitsch PetscCall(PetscFindInt(offset, size + 1, ranges, &r)); 4569507e4973SMatthew G. Knepley if (r < 0) r = -(r + 2); 45709371c9d4SSatish Balay if ((r < 0) || (r >= size)) { 45719371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Point %" PetscInt_FMT " mapped to invalid process %" PetscInt_FMT " (%" PetscInt_FMT ", %" PetscInt_FMT ")\n", rank, p, r, gdof, goff)); 45729371c9d4SSatish Balay valid = PETSC_FALSE; 45739371c9d4SSatish Balay break; 45749371c9d4SSatish Balay } 4575507e4973SMatthew G. Knepley } 4576507e4973SMatthew G. Knepley } 4577507e4973SMatthew G. Knepley } 45789566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&layout)); 45799566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, NULL)); 45801c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&valid, &gvalid, 1, MPIU_BOOL, MPI_LAND, comm)); 4581507e4973SMatthew G. Knepley if (!gvalid) { 45829566063dSJacob Faibussowitsch PetscCall(DMView(dm, NULL)); 4583507e4973SMatthew G. Knepley SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Inconsistent local and global sections"); 4584507e4973SMatthew G. Knepley } 45853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4586507e4973SMatthew G. Knepley } 4587f741bcd2SMatthew G. Knepley #endif 4588507e4973SMatthew G. Knepley 45895f06a3ddSJed Brown static PetscErrorCode DMGetIsoperiodicPointSF_Internal(DM dm, PetscSF *sf) 45906725e60dSJed Brown { 45916725e60dSJed Brown PetscErrorCode (*f)(DM, PetscSF *); 45924d86920dSPierre Jolivet 45936725e60dSJed Brown PetscFunctionBegin; 45946725e60dSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45954f572ea9SToby Isaac PetscAssertPointer(sf, 2); 45965f06a3ddSJed Brown PetscCall(PetscObjectQueryFunction((PetscObject)dm, "DMGetIsoperiodicPointSF_C", &f)); 45976725e60dSJed Brown if (f) PetscCall(f(dm, sf)); 45986725e60dSJed Brown else *sf = dm->sf; 45993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 46006725e60dSJed Brown } 46016725e60dSJed Brown 460288ed4aceSMatthew G Knepley /*@ 4603bb7acecfSBarry Smith DMGetGlobalSection - Get the `PetscSection` encoding the global data layout for the `DM`. 460488ed4aceSMatthew G Knepley 460520f4b53cSBarry Smith Collective 46068b1ab98fSJed Brown 460788ed4aceSMatthew G Knepley Input Parameter: 4608bb7acecfSBarry Smith . dm - The `DM` 460988ed4aceSMatthew G Knepley 461088ed4aceSMatthew G Knepley Output Parameter: 4611bb7acecfSBarry Smith . section - The `PetscSection` 461288ed4aceSMatthew G Knepley 461388ed4aceSMatthew G Knepley Level: intermediate 461488ed4aceSMatthew G Knepley 4615bb7acecfSBarry Smith Note: 4616bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 461788ed4aceSMatthew G Knepley 46181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()` 461988ed4aceSMatthew G Knepley @*/ 4620d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetGlobalSection(DM dm, PetscSection *section) 4621d71ae5a4SJacob Faibussowitsch { 462288ed4aceSMatthew G Knepley PetscFunctionBegin; 462388ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46244f572ea9SToby Isaac PetscAssertPointer(section, 2); 46251bb6d2a8SBarry Smith if (!dm->globalSection) { 4626fd59a867SMatthew G. Knepley PetscSection s; 46276725e60dSJed Brown PetscSF sf; 4628fd59a867SMatthew G. Knepley 46299566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 46307a8be351SBarry Smith PetscCheck(s, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a default PetscSection in order to create a global PetscSection"); 46317a8be351SBarry Smith PetscCheck(dm->sf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a point PetscSF in order to create a global PetscSection"); 46325f06a3ddSJed Brown PetscCall(DMGetIsoperiodicPointSF_Internal(dm, &sf)); 4633eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionCreateGlobalSection(s, sf, PETSC_TRUE, PETSC_FALSE, PETSC_FALSE, &dm->globalSection)); 46349566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&dm->map)); 46359566063dSJacob Faibussowitsch PetscCall(PetscSectionGetValueLayout(PetscObjectComm((PetscObject)dm), dm->globalSection, &dm->map)); 46369566063dSJacob Faibussowitsch PetscCall(PetscSectionViewFromOptions(dm->globalSection, NULL, "-global_section_view")); 463788ed4aceSMatthew G Knepley } 46381bb6d2a8SBarry Smith *section = dm->globalSection; 46393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 464088ed4aceSMatthew G Knepley } 464188ed4aceSMatthew G Knepley 4642b21d0597SMatthew G Knepley /*@ 4643bb7acecfSBarry Smith DMSetGlobalSection - Set the `PetscSection` encoding the global data layout for the `DM`. 4644b21d0597SMatthew G Knepley 4645b21d0597SMatthew G Knepley Input Parameters: 4646bb7acecfSBarry Smith + dm - The `DM` 46472fe279fdSBarry Smith - section - The PetscSection, or `NULL` 4648b21d0597SMatthew G Knepley 4649b21d0597SMatthew G Knepley Level: intermediate 4650b21d0597SMatthew G Knepley 4651bb7acecfSBarry Smith Note: 4652bb7acecfSBarry Smith Any existing `PetscSection` will be destroyed 4653b21d0597SMatthew G Knepley 46541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetGlobalSection()`, `DMSetLocalSection()` 4655b21d0597SMatthew G Knepley @*/ 4656d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetGlobalSection(DM dm, PetscSection section) 4657d71ae5a4SJacob Faibussowitsch { 4658b21d0597SMatthew G Knepley PetscFunctionBegin; 4659b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46605080bbdbSMatthew G Knepley if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 46619566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 46629566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 46631bb6d2a8SBarry Smith dm->globalSection = section; 4664497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 46659566063dSJacob Faibussowitsch if (section) PetscCall(DMDefaultSectionCheckConsistency_Internal(dm, dm->localSection, section)); 4666507e4973SMatthew G. Knepley #endif 466750350c8eSStefano Zampini /* Clear global scratch vectors and sectionSF */ 466850350c8eSStefano Zampini PetscCall(PetscSFDestroy(&dm->sectionSF)); 466952947b74SStefano Zampini PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 467050350c8eSStefano Zampini PetscCall(DMClearGlobalVectors(dm)); 467150350c8eSStefano Zampini PetscCall(DMClearNamedGlobalVectors(dm)); 46723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4673b21d0597SMatthew G Knepley } 4674b21d0597SMatthew G Knepley 467588ed4aceSMatthew G Knepley /*@ 4676bb7acecfSBarry Smith DMGetSectionSF - Get the `PetscSF` encoding the parallel dof overlap for the `DM`. If it has not been set, 4677bb7acecfSBarry Smith it is created from the default `PetscSection` layouts in the `DM`. 467888ed4aceSMatthew G Knepley 467988ed4aceSMatthew G Knepley Input Parameter: 4680bb7acecfSBarry Smith . dm - The `DM` 468188ed4aceSMatthew G Knepley 468288ed4aceSMatthew G Knepley Output Parameter: 4683bb7acecfSBarry Smith . sf - The `PetscSF` 468488ed4aceSMatthew G Knepley 468588ed4aceSMatthew G Knepley Level: intermediate 468688ed4aceSMatthew G Knepley 4687bb7acecfSBarry Smith Note: 4688bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 468988ed4aceSMatthew G Knepley 46901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetSectionSF()`, `DMCreateSectionSF()` 469188ed4aceSMatthew G Knepley @*/ 4692d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSectionSF(DM dm, PetscSF *sf) 4693d71ae5a4SJacob Faibussowitsch { 469488ed4aceSMatthew G Knepley PetscInt nroots; 469588ed4aceSMatthew G Knepley 469688ed4aceSMatthew G Knepley PetscFunctionBegin; 469788ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46984f572ea9SToby Isaac PetscAssertPointer(sf, 2); 469948a46eb9SPierre Jolivet if (!dm->sectionSF) PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 47009566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sectionSF, &nroots, NULL, NULL, NULL)); 470188ed4aceSMatthew G Knepley if (nroots < 0) { 470288ed4aceSMatthew G Knepley PetscSection section, gSection; 470388ed4aceSMatthew G Knepley 47049566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 470531ea6d37SMatthew G Knepley if (section) { 47069566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gSection)); 47079566063dSJacob Faibussowitsch PetscCall(DMCreateSectionSF(dm, section, gSection)); 470831ea6d37SMatthew G Knepley } else { 47090298fd71SBarry Smith *sf = NULL; 47103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 471131ea6d37SMatthew G Knepley } 471288ed4aceSMatthew G Knepley } 47131bb6d2a8SBarry Smith *sf = dm->sectionSF; 47143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 471588ed4aceSMatthew G Knepley } 471688ed4aceSMatthew G Knepley 471788ed4aceSMatthew G Knepley /*@ 4718bb7acecfSBarry Smith DMSetSectionSF - Set the `PetscSF` encoding the parallel dof overlap for the `DM` 471988ed4aceSMatthew G Knepley 472088ed4aceSMatthew G Knepley Input Parameters: 4721bb7acecfSBarry Smith + dm - The `DM` 4722bb7acecfSBarry Smith - sf - The `PetscSF` 472388ed4aceSMatthew G Knepley 472488ed4aceSMatthew G Knepley Level: intermediate 472588ed4aceSMatthew G Knepley 4726bb7acecfSBarry Smith Note: 4727bb7acecfSBarry Smith Any previous `PetscSF` is destroyed 472888ed4aceSMatthew G Knepley 47291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMCreateSectionSF()` 473088ed4aceSMatthew G Knepley @*/ 4731d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSectionSF(DM dm, PetscSF sf) 4732d71ae5a4SJacob Faibussowitsch { 473388ed4aceSMatthew G Knepley PetscFunctionBegin; 473488ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4735b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 47369566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 47379566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sectionSF)); 47381bb6d2a8SBarry Smith dm->sectionSF = sf; 47393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 474088ed4aceSMatthew G Knepley } 474188ed4aceSMatthew G Knepley 4742cc4c1da9SBarry Smith /*@ 4743bb7acecfSBarry Smith DMCreateSectionSF - Create the `PetscSF` encoding the parallel dof overlap for the `DM` based upon the `PetscSection`s 474488ed4aceSMatthew G Knepley describing the data layout. 474588ed4aceSMatthew G Knepley 474688ed4aceSMatthew G Knepley Input Parameters: 4747bb7acecfSBarry Smith + dm - The `DM` 4748bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4749bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 475088ed4aceSMatthew G Knepley 47511bb6d2a8SBarry Smith Level: developer 47521bb6d2a8SBarry Smith 4753bb7acecfSBarry Smith Note: 4754bb7acecfSBarry Smith One usually uses `DMGetSectionSF()` to obtain the `PetscSF` 4755bb7acecfSBarry Smith 475673ff1848SBarry Smith Developer Note: 4757bb7acecfSBarry Smith Since this routine has for arguments the two sections from the `DM` and puts the resulting `PetscSF` 4758bb7acecfSBarry Smith directly into the `DM`, perhaps this function should not take the local and global sections as 4759b6971eaeSBarry Smith input and should just obtain them from the `DM`? Plus PETSc creation functions return the thing 4760b6971eaeSBarry Smith they create, this returns nothing 47611bb6d2a8SBarry Smith 47621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMGetLocalSection()`, `DMGetGlobalSection()` 476388ed4aceSMatthew G Knepley @*/ 4764d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSectionSF(DM dm, PetscSection localSection, PetscSection globalSection) 4765d71ae5a4SJacob Faibussowitsch { 476688ed4aceSMatthew G Knepley PetscFunctionBegin; 476788ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47689566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphSection(dm->sectionSF, localSection, globalSection)); 47693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 477088ed4aceSMatthew G Knepley } 4771af122d2aSMatthew G Knepley 4772b21d0597SMatthew G Knepley /*@ 4773bb7acecfSBarry Smith DMGetPointSF - Get the `PetscSF` encoding the parallel section point overlap for the `DM`. 4774bb7acecfSBarry Smith 4775bb7acecfSBarry Smith Not collective but the resulting `PetscSF` is collective 4776b21d0597SMatthew G Knepley 4777b21d0597SMatthew G Knepley Input Parameter: 4778bb7acecfSBarry Smith . dm - The `DM` 4779b21d0597SMatthew G Knepley 4780b21d0597SMatthew G Knepley Output Parameter: 4781bb7acecfSBarry Smith . sf - The `PetscSF` 4782b21d0597SMatthew G Knepley 4783b21d0597SMatthew G Knepley Level: intermediate 4784b21d0597SMatthew G Knepley 4785bb7acecfSBarry Smith Note: 4786bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 4787b21d0597SMatthew G Knepley 47881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4789b21d0597SMatthew G Knepley @*/ 4790d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetPointSF(DM dm, PetscSF *sf) 4791d71ae5a4SJacob Faibussowitsch { 4792b21d0597SMatthew G Knepley PetscFunctionBegin; 4793b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47944f572ea9SToby Isaac PetscAssertPointer(sf, 2); 4795b21d0597SMatthew G Knepley *sf = dm->sf; 47963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4797b21d0597SMatthew G Knepley } 4798b21d0597SMatthew G Knepley 4799057b4bcdSMatthew G Knepley /*@ 4800bb7acecfSBarry Smith DMSetPointSF - Set the `PetscSF` encoding the parallel section point overlap for the `DM`. 4801bb7acecfSBarry Smith 480220f4b53cSBarry Smith Collective 4803057b4bcdSMatthew G Knepley 4804057b4bcdSMatthew G Knepley Input Parameters: 4805bb7acecfSBarry Smith + dm - The `DM` 4806bb7acecfSBarry Smith - sf - The `PetscSF` 4807057b4bcdSMatthew G Knepley 4808057b4bcdSMatthew G Knepley Level: intermediate 4809057b4bcdSMatthew G Knepley 48101cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4811057b4bcdSMatthew G Knepley @*/ 4812d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetPointSF(DM dm, PetscSF sf) 4813d71ae5a4SJacob Faibussowitsch { 4814057b4bcdSMatthew G Knepley PetscFunctionBegin; 4815057b4bcdSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4816b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 48179566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 48189566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sf)); 4819057b4bcdSMatthew G Knepley dm->sf = sf; 48203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4821057b4bcdSMatthew G Knepley } 4822057b4bcdSMatthew G Knepley 48234f37162bSMatthew G. Knepley /*@ 4824bb7acecfSBarry Smith DMGetNaturalSF - Get the `PetscSF` encoding the map back to the original mesh ordering 48254f37162bSMatthew G. Knepley 48264f37162bSMatthew G. Knepley Input Parameter: 4827bb7acecfSBarry Smith . dm - The `DM` 48284f37162bSMatthew G. Knepley 48294f37162bSMatthew G. Knepley Output Parameter: 4830bb7acecfSBarry Smith . sf - The `PetscSF` 48314f37162bSMatthew G. Knepley 48324f37162bSMatthew G. Knepley Level: intermediate 48334f37162bSMatthew G. Knepley 4834bb7acecfSBarry Smith Note: 4835bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 48364f37162bSMatthew G. Knepley 48371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 48384f37162bSMatthew G. Knepley @*/ 4839d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNaturalSF(DM dm, PetscSF *sf) 4840d71ae5a4SJacob Faibussowitsch { 48414f37162bSMatthew G. Knepley PetscFunctionBegin; 48424f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48434f572ea9SToby Isaac PetscAssertPointer(sf, 2); 48444f37162bSMatthew G. Knepley *sf = dm->sfNatural; 48453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48464f37162bSMatthew G. Knepley } 48474f37162bSMatthew G. Knepley 48484f37162bSMatthew G. Knepley /*@ 48494f37162bSMatthew G. Knepley DMSetNaturalSF - Set the PetscSF encoding the map back to the original mesh ordering 48504f37162bSMatthew G. Knepley 48514f37162bSMatthew G. Knepley Input Parameters: 48524f37162bSMatthew G. Knepley + dm - The DM 48534f37162bSMatthew G. Knepley - sf - The PetscSF 48544f37162bSMatthew G. Knepley 48554f37162bSMatthew G. Knepley Level: intermediate 48564f37162bSMatthew G. Knepley 48571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 48584f37162bSMatthew G. Knepley @*/ 4859d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNaturalSF(DM dm, PetscSF sf) 4860d71ae5a4SJacob Faibussowitsch { 48614f37162bSMatthew G. Knepley PetscFunctionBegin; 48624f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48634f37162bSMatthew G. Knepley if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 48649566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 48659566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sfNatural)); 48664f37162bSMatthew G. Knepley dm->sfNatural = sf; 48673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48684f37162bSMatthew G. Knepley } 48694f37162bSMatthew G. Knepley 4870d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetDefaultAdjacency_Private(DM dm, PetscInt f, PetscObject disc) 4871d71ae5a4SJacob Faibussowitsch { 487234aa8a36SMatthew G. Knepley PetscClassId id; 487334aa8a36SMatthew G. Knepley 487434aa8a36SMatthew G. Knepley PetscFunctionBegin; 48759566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 487634aa8a36SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 48779566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 487834aa8a36SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 48799566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_TRUE, PETSC_FALSE)); 488017c1d62eSMatthew G. Knepley } else { 48819566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 488234aa8a36SMatthew G. Knepley } 48833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 488434aa8a36SMatthew G. Knepley } 488534aa8a36SMatthew G. Knepley 4886d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFieldEnlarge_Static(DM dm, PetscInt NfNew) 4887d71ae5a4SJacob Faibussowitsch { 488844a7f3ddSMatthew G. Knepley RegionField *tmpr; 488944a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf, f; 489044a7f3ddSMatthew G. Knepley 489144a7f3ddSMatthew G. Knepley PetscFunctionBegin; 48923ba16761SJacob Faibussowitsch if (Nf >= NfNew) PetscFunctionReturn(PETSC_SUCCESS); 48939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NfNew, &tmpr)); 489444a7f3ddSMatthew G. Knepley for (f = 0; f < Nf; ++f) tmpr[f] = dm->fields[f]; 48959371c9d4SSatish Balay for (f = Nf; f < NfNew; ++f) { 48969371c9d4SSatish Balay tmpr[f].disc = NULL; 48979371c9d4SSatish Balay tmpr[f].label = NULL; 48989371c9d4SSatish Balay tmpr[f].avoidTensor = PETSC_FALSE; 48999371c9d4SSatish Balay } 49009566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 490144a7f3ddSMatthew G. Knepley dm->Nf = NfNew; 490244a7f3ddSMatthew G. Knepley dm->fields = tmpr; 49033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 490444a7f3ddSMatthew G. Knepley } 490544a7f3ddSMatthew G. Knepley 490644a7f3ddSMatthew G. Knepley /*@ 490720f4b53cSBarry Smith DMClearFields - Remove all fields from the `DM` 490844a7f3ddSMatthew G. Knepley 490920f4b53cSBarry Smith Logically Collective 491044a7f3ddSMatthew G. Knepley 491144a7f3ddSMatthew G. Knepley Input Parameter: 491220f4b53cSBarry Smith . dm - The `DM` 491344a7f3ddSMatthew G. Knepley 491444a7f3ddSMatthew G. Knepley Level: intermediate 491544a7f3ddSMatthew G. Knepley 49161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetNumFields()`, `DMSetField()` 491744a7f3ddSMatthew G. Knepley @*/ 4918d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearFields(DM dm) 4919d71ae5a4SJacob Faibussowitsch { 492044a7f3ddSMatthew G. Knepley PetscInt f; 492144a7f3ddSMatthew G. Knepley 492244a7f3ddSMatthew G. Knepley PetscFunctionBegin; 492344a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 492444a7f3ddSMatthew G. Knepley for (f = 0; f < dm->Nf; ++f) { 49259566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 49269566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 492744a7f3ddSMatthew G. Knepley } 49289566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 492944a7f3ddSMatthew G. Knepley dm->fields = NULL; 493044a7f3ddSMatthew G. Knepley dm->Nf = 0; 49313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 493244a7f3ddSMatthew G. Knepley } 493344a7f3ddSMatthew G. Knepley 4934689b5837SMatthew G. Knepley /*@ 493520f4b53cSBarry Smith DMGetNumFields - Get the number of fields in the `DM` 4936689b5837SMatthew G. Knepley 493720f4b53cSBarry Smith Not Collective 4938689b5837SMatthew G. Knepley 4939689b5837SMatthew G. Knepley Input Parameter: 494020f4b53cSBarry Smith . dm - The `DM` 4941689b5837SMatthew G. Knepley 4942689b5837SMatthew G. Knepley Output Parameter: 494360225df5SJacob Faibussowitsch . numFields - The number of fields 4944689b5837SMatthew G. Knepley 4945689b5837SMatthew G. Knepley Level: intermediate 4946689b5837SMatthew G. Knepley 49471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNumFields()`, `DMSetField()` 4948689b5837SMatthew G. Knepley @*/ 4949d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumFields(DM dm, PetscInt *numFields) 4950d71ae5a4SJacob Faibussowitsch { 49510f21e855SMatthew G. Knepley PetscFunctionBegin; 49520f21e855SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49534f572ea9SToby Isaac PetscAssertPointer(numFields, 2); 495444a7f3ddSMatthew G. Knepley *numFields = dm->Nf; 49553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4956af122d2aSMatthew G Knepley } 4957af122d2aSMatthew G Knepley 4958689b5837SMatthew G. Knepley /*@ 495920f4b53cSBarry Smith DMSetNumFields - Set the number of fields in the `DM` 4960689b5837SMatthew G. Knepley 496120f4b53cSBarry Smith Logically Collective 4962689b5837SMatthew G. Knepley 4963689b5837SMatthew G. Knepley Input Parameters: 496420f4b53cSBarry Smith + dm - The `DM` 496560225df5SJacob Faibussowitsch - numFields - The number of fields 4966689b5837SMatthew G. Knepley 4967689b5837SMatthew G. Knepley Level: intermediate 4968689b5837SMatthew G. Knepley 49691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetField()` 4970689b5837SMatthew G. Knepley @*/ 4971d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNumFields(DM dm, PetscInt numFields) 4972d71ae5a4SJacob Faibussowitsch { 49730f21e855SMatthew G. Knepley PetscInt Nf, f; 4974af122d2aSMatthew G Knepley 4975af122d2aSMatthew G Knepley PetscFunctionBegin; 4976af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49779566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 49780f21e855SMatthew G. Knepley for (f = Nf; f < numFields; ++f) { 49790f21e855SMatthew G. Knepley PetscContainer obj; 49800f21e855SMatthew G. Knepley 49819566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject)dm), &obj)); 49829566063dSJacob Faibussowitsch PetscCall(DMAddField(dm, NULL, (PetscObject)obj)); 49839566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&obj)); 4984af122d2aSMatthew G Knepley } 49853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4986af122d2aSMatthew G Knepley } 4987af122d2aSMatthew G Knepley 4988c1929be8SMatthew G. Knepley /*@ 4989bb7acecfSBarry Smith DMGetField - Return the `DMLabel` and discretization object for a given `DM` field 4990c1929be8SMatthew G. Knepley 499120f4b53cSBarry Smith Not Collective 4992c1929be8SMatthew G. Knepley 4993c1929be8SMatthew G. Knepley Input Parameters: 4994bb7acecfSBarry Smith + dm - The `DM` 4995c1929be8SMatthew G. Knepley - f - The field number 4996c1929be8SMatthew G. Knepley 499744a7f3ddSMatthew G. Knepley Output Parameters: 499820f4b53cSBarry Smith + label - The label indicating the support of the field, or `NULL` for the entire mesh (pass in `NULL` if not needed) 499920f4b53cSBarry Smith - disc - The discretization object (pass in `NULL` if not needed) 5000c1929be8SMatthew G. Knepley 500144a7f3ddSMatthew G. Knepley Level: intermediate 5002c1929be8SMatthew G. Knepley 50031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()` 5004c1929be8SMatthew G. Knepley @*/ 5005d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetField(DM dm, PetscInt f, DMLabel *label, PetscObject *disc) 5006d71ae5a4SJacob Faibussowitsch { 5007af122d2aSMatthew G Knepley PetscFunctionBegin; 5008af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 50094f572ea9SToby Isaac PetscAssertPointer(disc, 4); 50107a8be351SBarry Smith PetscCheck((f >= 0) && (f < dm->Nf), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, dm->Nf); 501144a7f3ddSMatthew G. Knepley if (label) *label = dm->fields[f].label; 5012bb7acecfSBarry Smith if (disc) *disc = dm->fields[f].disc; 50133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5014decb47aaSMatthew G. Knepley } 5015decb47aaSMatthew G. Knepley 5016083401c6SMatthew G. Knepley /* Does not clear the DS */ 5017d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField_Internal(DM dm, PetscInt f, DMLabel label, PetscObject disc) 5018d71ae5a4SJacob Faibussowitsch { 5019083401c6SMatthew G. Knepley PetscFunctionBegin; 50209566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, f + 1)); 50219566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 50229566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 5023083401c6SMatthew G. Knepley dm->fields[f].label = label; 5024bb7acecfSBarry Smith dm->fields[f].disc = disc; 50259566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 5026bb7acecfSBarry Smith PetscCall(PetscObjectReference((PetscObject)disc)); 50273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5028083401c6SMatthew G. Knepley } 5029083401c6SMatthew G. Knepley 5030ffeef943SBarry Smith /*@ 5031bb7acecfSBarry Smith DMSetField - Set the discretization object for a given `DM` field. Usually one would call `DMAddField()` which automatically handles 5032bb7acecfSBarry Smith the field numbering. 5033c1929be8SMatthew G. Knepley 503420f4b53cSBarry Smith Logically Collective 5035c1929be8SMatthew G. Knepley 5036c1929be8SMatthew G. Knepley Input Parameters: 5037bb7acecfSBarry Smith + dm - The `DM` 5038c1929be8SMatthew G. Knepley . f - The field number 503920f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh 5040bb7acecfSBarry Smith - disc - The discretization object 5041c1929be8SMatthew G. Knepley 504244a7f3ddSMatthew G. Knepley Level: intermediate 5043c1929be8SMatthew G. Knepley 50441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()` 5045c1929be8SMatthew G. Knepley @*/ 5046d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField(DM dm, PetscInt f, DMLabel label, PetscObject disc) 5047d71ae5a4SJacob Faibussowitsch { 5048decb47aaSMatthew G. Knepley PetscFunctionBegin; 5049decb47aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5050e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 5051bb7acecfSBarry Smith PetscValidHeader(disc, 4); 50527a8be351SBarry Smith PetscCheck(f >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be non-negative", f); 5053bb7acecfSBarry Smith PetscCall(DMSetField_Internal(dm, f, label, disc)); 5054bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, f, disc)); 50559566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 50563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 505744a7f3ddSMatthew G. Knepley } 505844a7f3ddSMatthew G. Knepley 5059ffeef943SBarry Smith /*@ 5060bb7acecfSBarry Smith DMAddField - Add a field to a `DM` object. A field is a function space defined by of a set of discretization points (geometric entities) 5061bb7acecfSBarry Smith and a discretization object that defines the function space associated with those points. 506244a7f3ddSMatthew G. Knepley 506320f4b53cSBarry Smith Logically Collective 506444a7f3ddSMatthew G. Knepley 506544a7f3ddSMatthew G. Knepley Input Parameters: 5066bb7acecfSBarry Smith + dm - The `DM` 506720f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh 5068bb7acecfSBarry Smith - disc - The discretization object 506944a7f3ddSMatthew G. Knepley 507044a7f3ddSMatthew G. Knepley Level: intermediate 507144a7f3ddSMatthew G. Knepley 5072bb7acecfSBarry Smith Notes: 5073bb7acecfSBarry Smith The label already exists or will be added to the `DM` with `DMSetLabel()`. 5074bb7acecfSBarry Smith 5075da81f932SPierre Jolivet For example, a piecewise continuous pressure field can be defined by coefficients at the cell centers of a mesh and piecewise constant functions 5076bb7acecfSBarry Smith within each cell. Thus a specific function in the space is defined by the combination of a `Vec` containing the coefficients, a `DM` defining the 5077bb7acecfSBarry Smith geometry entities, a `DMLabel` indicating a subset of those geometric entities, and a discretization object, such as a `PetscFE`. 5078bb7acecfSBarry Smith 50791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLabel()`, `DMSetField()`, `DMGetField()`, `PetscFE` 508044a7f3ddSMatthew G. Knepley @*/ 5081d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddField(DM dm, DMLabel label, PetscObject disc) 5082d71ae5a4SJacob Faibussowitsch { 508344a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf; 508444a7f3ddSMatthew G. Knepley 508544a7f3ddSMatthew G. Knepley PetscFunctionBegin; 508644a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5087064a246eSJacob Faibussowitsch if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 5088bb7acecfSBarry Smith PetscValidHeader(disc, 3); 50899566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, Nf + 1)); 509044a7f3ddSMatthew G. Knepley dm->fields[Nf].label = label; 5091bb7acecfSBarry Smith dm->fields[Nf].disc = disc; 50929566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 5093bb7acecfSBarry Smith PetscCall(PetscObjectReference((PetscObject)disc)); 5094bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, Nf, disc)); 50959566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 50963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5097af122d2aSMatthew G Knepley } 50986636e97aSMatthew G Knepley 5099e5e52638SMatthew G. Knepley /*@ 5100e0b68406SMatthew Knepley DMSetFieldAvoidTensor - Set flag to avoid defining the field on tensor cells 5101e0b68406SMatthew Knepley 510220f4b53cSBarry Smith Logically Collective 5103e0b68406SMatthew Knepley 5104e0b68406SMatthew Knepley Input Parameters: 5105bb7acecfSBarry Smith + dm - The `DM` 5106e0b68406SMatthew Knepley . f - The field index 5107bb7acecfSBarry Smith - avoidTensor - `PETSC_TRUE` to skip defining the field on tensor cells 5108e0b68406SMatthew Knepley 5109e0b68406SMatthew Knepley Level: intermediate 5110e0b68406SMatthew Knepley 51111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()` 5112e0b68406SMatthew Knepley @*/ 5113d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFieldAvoidTensor(DM dm, PetscInt f, PetscBool avoidTensor) 5114d71ae5a4SJacob Faibussowitsch { 5115e0b68406SMatthew Knepley PetscFunctionBegin; 511663a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5117e0b68406SMatthew Knepley dm->fields[f].avoidTensor = avoidTensor; 51183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5119e0b68406SMatthew Knepley } 5120e0b68406SMatthew Knepley 5121e0b68406SMatthew Knepley /*@ 5122e0b68406SMatthew Knepley DMGetFieldAvoidTensor - Get flag to avoid defining the field on tensor cells 5123e0b68406SMatthew Knepley 512420f4b53cSBarry Smith Not Collective 5125e0b68406SMatthew Knepley 5126e0b68406SMatthew Knepley Input Parameters: 5127bb7acecfSBarry Smith + dm - The `DM` 5128e0b68406SMatthew Knepley - f - The field index 5129e0b68406SMatthew Knepley 5130e0b68406SMatthew Knepley Output Parameter: 5131e0b68406SMatthew Knepley . avoidTensor - The flag to avoid defining the field on tensor cells 5132e0b68406SMatthew Knepley 5133e0b68406SMatthew Knepley Level: intermediate 5134e0b68406SMatthew Knepley 513560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`, `DMGetField()`, `DMSetFieldAvoidTensor()` 5136e0b68406SMatthew Knepley @*/ 5137d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFieldAvoidTensor(DM dm, PetscInt f, PetscBool *avoidTensor) 5138d71ae5a4SJacob Faibussowitsch { 5139e0b68406SMatthew Knepley PetscFunctionBegin; 514063a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5141e0b68406SMatthew Knepley *avoidTensor = dm->fields[f].avoidTensor; 51423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5143e0b68406SMatthew Knepley } 5144e0b68406SMatthew Knepley 5145e0b68406SMatthew Knepley /*@ 5146bb7acecfSBarry Smith DMCopyFields - Copy the discretizations for the `DM` into another `DM` 5147e5e52638SMatthew G. Knepley 514820f4b53cSBarry Smith Collective 5149e5e52638SMatthew G. Knepley 5150e5e52638SMatthew G. Knepley Input Parameter: 5151bb7acecfSBarry Smith . dm - The `DM` 5152e5e52638SMatthew G. Knepley 5153e5e52638SMatthew G. Knepley Output Parameter: 5154bb7acecfSBarry Smith . newdm - The `DM` 5155e5e52638SMatthew G. Knepley 5156e5e52638SMatthew G. Knepley Level: advanced 5157e5e52638SMatthew G. Knepley 51581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetField()`, `DMSetField()`, `DMAddField()`, `DMCopyDS()`, `DMGetDS()`, `DMGetCellDS()` 5159e5e52638SMatthew G. Knepley @*/ 5160d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyFields(DM dm, DM newdm) 5161d71ae5a4SJacob Faibussowitsch { 5162e5e52638SMatthew G. Knepley PetscInt Nf, f; 5163e5e52638SMatthew G. Knepley 5164e5e52638SMatthew G. Knepley PetscFunctionBegin; 51653ba16761SJacob Faibussowitsch if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS); 51669566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 51679566063dSJacob Faibussowitsch PetscCall(DMClearFields(newdm)); 5168e5e52638SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5169e5e52638SMatthew G. Knepley DMLabel label; 5170e5e52638SMatthew G. Knepley PetscObject field; 517134aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 5172e5e52638SMatthew G. Knepley 51739566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, &label, &field)); 51749566063dSJacob Faibussowitsch PetscCall(DMSetField(newdm, f, label, field)); 51759566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, f, &useCone, &useClosure)); 51769566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(newdm, f, useCone, useClosure)); 517734aa8a36SMatthew G. Knepley } 51783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 517934aa8a36SMatthew G. Knepley } 518034aa8a36SMatthew G. Knepley 518134aa8a36SMatthew G. Knepley /*@ 518234aa8a36SMatthew G. Knepley DMGetAdjacency - Returns the flags for determining variable influence 518334aa8a36SMatthew G. Knepley 518420f4b53cSBarry Smith Not Collective 518534aa8a36SMatthew G. Knepley 518634aa8a36SMatthew G. Knepley Input Parameters: 518720f4b53cSBarry Smith + dm - The `DM` object 518820f4b53cSBarry Smith - f - The field number, or `PETSC_DEFAULT` for the default adjacency 518934aa8a36SMatthew G. Knepley 5190d8d19677SJose E. Roman Output Parameters: 519134aa8a36SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 519234aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 519334aa8a36SMatthew G. Knepley 519434aa8a36SMatthew G. Knepley Level: developer 519534aa8a36SMatthew G. Knepley 519620f4b53cSBarry Smith Notes: 519720f4b53cSBarry Smith .vb 519820f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 519920f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 520020f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 520120f4b53cSBarry Smith .ve 520220f4b53cSBarry Smith Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 520320f4b53cSBarry Smith 52041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetAdjacency()`, `DMGetField()`, `DMSetField()` 520534aa8a36SMatthew G. Knepley @*/ 5206d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAdjacency(DM dm, PetscInt f, PetscBool *useCone, PetscBool *useClosure) 5207d71ae5a4SJacob Faibussowitsch { 520834aa8a36SMatthew G. Knepley PetscFunctionBegin; 520934aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 52104f572ea9SToby Isaac if (useCone) PetscAssertPointer(useCone, 3); 52114f572ea9SToby Isaac if (useClosure) PetscAssertPointer(useClosure, 4); 521234aa8a36SMatthew G. Knepley if (f < 0) { 521334aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->adjacency[0]; 521434aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->adjacency[1]; 521534aa8a36SMatthew G. Knepley } else { 521634aa8a36SMatthew G. Knepley PetscInt Nf; 521734aa8a36SMatthew G. Knepley 52189566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 52197a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 522034aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->fields[f].adjacency[0]; 522134aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->fields[f].adjacency[1]; 522234aa8a36SMatthew G. Knepley } 52233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 522434aa8a36SMatthew G. Knepley } 522534aa8a36SMatthew G. Knepley 522634aa8a36SMatthew G. Knepley /*@ 522734aa8a36SMatthew G. Knepley DMSetAdjacency - Set the flags for determining variable influence 522834aa8a36SMatthew G. Knepley 522920f4b53cSBarry Smith Not Collective 523034aa8a36SMatthew G. Knepley 523134aa8a36SMatthew G. Knepley Input Parameters: 523220f4b53cSBarry Smith + dm - The `DM` object 523334aa8a36SMatthew G. Knepley . f - The field number 523434aa8a36SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 523534aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 523634aa8a36SMatthew G. Knepley 523734aa8a36SMatthew G. Knepley Level: developer 523834aa8a36SMatthew G. Knepley 523920f4b53cSBarry Smith Notes: 524020f4b53cSBarry Smith .vb 524120f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 524220f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 524320f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 524420f4b53cSBarry Smith .ve 524520f4b53cSBarry Smith Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 524620f4b53cSBarry Smith 52471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetAdjacency()`, `DMGetField()`, `DMSetField()` 524834aa8a36SMatthew G. Knepley @*/ 5249d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAdjacency(DM dm, PetscInt f, PetscBool useCone, PetscBool useClosure) 5250d71ae5a4SJacob Faibussowitsch { 525134aa8a36SMatthew G. Knepley PetscFunctionBegin; 525234aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 525334aa8a36SMatthew G. Knepley if (f < 0) { 525434aa8a36SMatthew G. Knepley dm->adjacency[0] = useCone; 525534aa8a36SMatthew G. Knepley dm->adjacency[1] = useClosure; 525634aa8a36SMatthew G. Knepley } else { 525734aa8a36SMatthew G. Knepley PetscInt Nf; 525834aa8a36SMatthew G. Knepley 52599566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 52607a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 526134aa8a36SMatthew G. Knepley dm->fields[f].adjacency[0] = useCone; 526234aa8a36SMatthew G. Knepley dm->fields[f].adjacency[1] = useClosure; 5263e5e52638SMatthew G. Knepley } 52643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5265e5e52638SMatthew G. Knepley } 5266e5e52638SMatthew G. Knepley 5267b0441da4SMatthew G. Knepley /*@ 5268b0441da4SMatthew G. Knepley DMGetBasicAdjacency - Returns the flags for determining variable influence, using either the default or field 0 if it is defined 5269b0441da4SMatthew G. Knepley 5270b0441da4SMatthew G. Knepley Not collective 5271b0441da4SMatthew G. Knepley 5272f899ff85SJose E. Roman Input Parameter: 527320f4b53cSBarry Smith . dm - The `DM` object 5274b0441da4SMatthew G. Knepley 5275d8d19677SJose E. Roman Output Parameters: 5276b0441da4SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 5277b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5278b0441da4SMatthew G. Knepley 5279b0441da4SMatthew G. Knepley Level: developer 5280b0441da4SMatthew G. Knepley 528120f4b53cSBarry Smith Notes: 528220f4b53cSBarry Smith .vb 528320f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 528420f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 528520f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 528620f4b53cSBarry Smith .ve 528720f4b53cSBarry Smith 52881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5289b0441da4SMatthew G. Knepley @*/ 5290d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasicAdjacency(DM dm, PetscBool *useCone, PetscBool *useClosure) 5291d71ae5a4SJacob Faibussowitsch { 5292b0441da4SMatthew G. Knepley PetscInt Nf; 5293b0441da4SMatthew G. Knepley 5294b0441da4SMatthew G. Knepley PetscFunctionBegin; 5295b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 52964f572ea9SToby Isaac if (useCone) PetscAssertPointer(useCone, 2); 52974f572ea9SToby Isaac if (useClosure) PetscAssertPointer(useClosure, 3); 52989566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5299b0441da4SMatthew G. Knepley if (!Nf) { 53009566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5301b0441da4SMatthew G. Knepley } else { 53029566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, 0, useCone, useClosure)); 5303b0441da4SMatthew G. Knepley } 53043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5305b0441da4SMatthew G. Knepley } 5306b0441da4SMatthew G. Knepley 5307b0441da4SMatthew G. Knepley /*@ 5308b0441da4SMatthew G. Knepley DMSetBasicAdjacency - Set the flags for determining variable influence, using either the default or field 0 if it is defined 5309b0441da4SMatthew G. Knepley 531020f4b53cSBarry Smith Not Collective 5311b0441da4SMatthew G. Knepley 5312b0441da4SMatthew G. Knepley Input Parameters: 531320f4b53cSBarry Smith + dm - The `DM` object 5314b0441da4SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 5315b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5316b0441da4SMatthew G. Knepley 5317b0441da4SMatthew G. Knepley Level: developer 5318b0441da4SMatthew G. Knepley 531920f4b53cSBarry Smith Notes: 532020f4b53cSBarry Smith .vb 532120f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 532220f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 532320f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 532420f4b53cSBarry Smith .ve 532520f4b53cSBarry Smith 53261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5327b0441da4SMatthew G. Knepley @*/ 5328d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetBasicAdjacency(DM dm, PetscBool useCone, PetscBool useClosure) 5329d71ae5a4SJacob Faibussowitsch { 5330b0441da4SMatthew G. Knepley PetscInt Nf; 5331b0441da4SMatthew G. Knepley 5332b0441da4SMatthew G. Knepley PetscFunctionBegin; 5333b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 53349566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5335b0441da4SMatthew G. Knepley if (!Nf) { 53369566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5337b0441da4SMatthew G. Knepley } else { 53389566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, 0, useCone, useClosure)); 5339e5e52638SMatthew G. Knepley } 53403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5341e5e52638SMatthew G. Knepley } 5342e5e52638SMatthew G. Knepley 5343d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompleteBCLabels_Internal(DM dm) 5344d71ae5a4SJacob Faibussowitsch { 5345799db056SMatthew G. Knepley DM plex; 5346799db056SMatthew G. Knepley DMLabel *labels, *glabels; 5347799db056SMatthew G. Knepley const char **names; 5348799db056SMatthew G. Knepley char *sendNames, *recvNames; 5349799db056SMatthew G. Knepley PetscInt Nds, s, maxLabels = 0, maxLen = 0, gmaxLen, Nl = 0, gNl, l, gl, m; 5350799db056SMatthew G. Knepley size_t len; 5351799db056SMatthew G. Knepley MPI_Comm comm; 5352799db056SMatthew G. Knepley PetscMPIInt rank, size, p, *counts, *displs; 5353783e2ec8SMatthew G. Knepley 5354783e2ec8SMatthew G. Knepley PetscFunctionBegin; 5355799db056SMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 5356799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(comm, &size)); 5357799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5358799db056SMatthew G. Knepley PetscCall(DMGetNumDS(dm, &Nds)); 5359799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5360799db056SMatthew G. Knepley PetscDS dsBC; 5361799db056SMatthew G. Knepley PetscInt numBd; 5362799db056SMatthew G. Knepley 536307218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL)); 5364799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5365799db056SMatthew G. Knepley maxLabels += numBd; 5366799db056SMatthew G. Knepley } 5367799db056SMatthew G. Knepley PetscCall(PetscCalloc1(maxLabels, &labels)); 5368799db056SMatthew G. Knepley /* Get list of labels to be completed */ 5369799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5370799db056SMatthew G. Knepley PetscDS dsBC; 5371799db056SMatthew G. Knepley PetscInt numBd, bd; 5372799db056SMatthew G. Knepley 537307218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL)); 5374799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5375799db056SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 5376799db056SMatthew G. Knepley DMLabel label; 5377799db056SMatthew G. Knepley PetscInt field; 5378799db056SMatthew G. Knepley PetscObject obj; 5379799db056SMatthew G. Knepley PetscClassId id; 5380799db056SMatthew G. Knepley 5381799db056SMatthew G. Knepley PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 53829566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 53839566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 5384799db056SMatthew G. Knepley if (!(id == PETSCFE_CLASSID) || !label) continue; 53859371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 53869371c9d4SSatish Balay if (labels[l] == label) break; 5387799db056SMatthew G. Knepley if (l == Nl) labels[Nl++] = label; 5388783e2ec8SMatthew G. Knepley } 5389799db056SMatthew G. Knepley } 5390799db056SMatthew G. Knepley /* Get label names */ 5391799db056SMatthew G. Knepley PetscCall(PetscMalloc1(Nl, &names)); 5392799db056SMatthew G. Knepley for (l = 0; l < Nl; ++l) PetscCall(PetscObjectGetName((PetscObject)labels[l], &names[l])); 53939371c9d4SSatish Balay for (l = 0; l < Nl; ++l) { 53949371c9d4SSatish Balay PetscCall(PetscStrlen(names[l], &len)); 53959371c9d4SSatish Balay maxLen = PetscMax(maxLen, (PetscInt)len + 2); 53969371c9d4SSatish Balay } 5397799db056SMatthew G. Knepley PetscCall(PetscFree(labels)); 5398712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(&maxLen, &gmaxLen, 1, MPIU_INT, MPI_MAX, comm)); 5399799db056SMatthew G. Knepley PetscCall(PetscCalloc1(Nl * gmaxLen, &sendNames)); 5400c6a7a370SJeremy L Thompson for (l = 0; l < Nl; ++l) PetscCall(PetscStrncpy(&sendNames[gmaxLen * l], names[l], gmaxLen)); 5401799db056SMatthew G. Knepley PetscCall(PetscFree(names)); 5402799db056SMatthew G. Knepley /* Put all names on all processes */ 5403799db056SMatthew G. Knepley PetscCall(PetscCalloc2(size, &counts, size + 1, &displs)); 5404799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgather(&Nl, 1, MPI_INT, counts, 1, MPI_INT, comm)); 5405799db056SMatthew G. Knepley for (p = 0; p < size; ++p) displs[p + 1] = displs[p] + counts[p]; 5406799db056SMatthew G. Knepley gNl = displs[size]; 54079371c9d4SSatish Balay for (p = 0; p < size; ++p) { 54089371c9d4SSatish Balay counts[p] *= gmaxLen; 54099371c9d4SSatish Balay displs[p] *= gmaxLen; 54109371c9d4SSatish Balay } 5411799db056SMatthew G. Knepley PetscCall(PetscCalloc2(gNl * gmaxLen, &recvNames, gNl, &glabels)); 5412799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgatherv(sendNames, counts[rank], MPI_CHAR, recvNames, counts, displs, MPI_CHAR, comm)); 5413799db056SMatthew G. Knepley PetscCall(PetscFree2(counts, displs)); 5414799db056SMatthew G. Knepley PetscCall(PetscFree(sendNames)); 5415799db056SMatthew G. Knepley for (l = 0, gl = 0; l < gNl; ++l) { 5416799db056SMatthew G. Knepley PetscCall(DMGetLabel(dm, &recvNames[l * gmaxLen], &glabels[gl])); 5417799db056SMatthew G. Knepley PetscCheck(glabels[gl], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Label %s missing on rank %d", &recvNames[l * gmaxLen], rank); 54189371c9d4SSatish Balay for (m = 0; m < gl; ++m) 54199371c9d4SSatish Balay if (glabels[m] == glabels[gl]) continue; 54209566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 5421799db056SMatthew G. Knepley PetscCall(DMPlexLabelComplete(plex, glabels[gl])); 54229566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 5423799db056SMatthew G. Knepley ++gl; 5424783e2ec8SMatthew G. Knepley } 5425799db056SMatthew G. Knepley PetscCall(PetscFree2(recvNames, glabels)); 54263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5427783e2ec8SMatthew G. Knepley } 5428783e2ec8SMatthew G. Knepley 5429d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDSEnlarge_Static(DM dm, PetscInt NdsNew) 5430d71ae5a4SJacob Faibussowitsch { 5431e5e52638SMatthew G. Knepley DMSpace *tmpd; 5432e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5433e5e52638SMatthew G. Knepley 5434e5e52638SMatthew G. Knepley PetscFunctionBegin; 54353ba16761SJacob Faibussowitsch if (Nds >= NdsNew) PetscFunctionReturn(PETSC_SUCCESS); 54369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NdsNew, &tmpd)); 5437e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) tmpd[s] = dm->probs[s]; 54389371c9d4SSatish Balay for (s = Nds; s < NdsNew; ++s) { 54399371c9d4SSatish Balay tmpd[s].ds = NULL; 54409371c9d4SSatish Balay tmpd[s].label = NULL; 54419371c9d4SSatish Balay tmpd[s].fields = NULL; 54429371c9d4SSatish Balay } 54439566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5444e5e52638SMatthew G. Knepley dm->Nds = NdsNew; 5445e5e52638SMatthew G. Knepley dm->probs = tmpd; 54463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5447e5e52638SMatthew G. Knepley } 5448e5e52638SMatthew G. Knepley 5449e5e52638SMatthew G. Knepley /*@ 545020f4b53cSBarry Smith DMGetNumDS - Get the number of discrete systems in the `DM` 5451e5e52638SMatthew G. Knepley 545220f4b53cSBarry Smith Not Collective 5453e5e52638SMatthew G. Knepley 5454e5e52638SMatthew G. Knepley Input Parameter: 545520f4b53cSBarry Smith . dm - The `DM` 5456e5e52638SMatthew G. Knepley 5457e5e52638SMatthew G. Knepley Output Parameter: 545820f4b53cSBarry Smith . Nds - The number of `PetscDS` objects 5459e5e52638SMatthew G. Knepley 5460e5e52638SMatthew G. Knepley Level: intermediate 5461e5e52638SMatthew G. Knepley 54621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMGetCellDS()` 5463e5e52638SMatthew G. Knepley @*/ 5464d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumDS(DM dm, PetscInt *Nds) 5465d71ae5a4SJacob Faibussowitsch { 5466e5e52638SMatthew G. Knepley PetscFunctionBegin; 5467e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 54684f572ea9SToby Isaac PetscAssertPointer(Nds, 2); 5469e5e52638SMatthew G. Knepley *Nds = dm->Nds; 54703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5471e5e52638SMatthew G. Knepley } 5472e5e52638SMatthew G. Knepley 5473e5e52638SMatthew G. Knepley /*@ 547420f4b53cSBarry Smith DMClearDS - Remove all discrete systems from the `DM` 5475e5e52638SMatthew G. Knepley 547620f4b53cSBarry Smith Logically Collective 5477e5e52638SMatthew G. Knepley 5478e5e52638SMatthew G. Knepley Input Parameter: 547920f4b53cSBarry Smith . dm - The `DM` 5480e5e52638SMatthew G. Knepley 5481e5e52638SMatthew G. Knepley Level: intermediate 5482e5e52638SMatthew G. Knepley 54831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumDS()`, `DMGetDS()`, `DMSetField()` 5484e5e52638SMatthew G. Knepley @*/ 5485d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearDS(DM dm) 5486d71ae5a4SJacob Faibussowitsch { 5487e5e52638SMatthew G. Knepley PetscInt s; 5488e5e52638SMatthew G. Knepley 5489e5e52638SMatthew G. Knepley PetscFunctionBegin; 5490e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5491e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 54929566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 549307218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[s].dsIn)); 54949566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[s].label)); 54959566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[s].fields)); 5496e5e52638SMatthew G. Knepley } 54979566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5498e5e52638SMatthew G. Knepley dm->probs = NULL; 5499e5e52638SMatthew G. Knepley dm->Nds = 0; 55003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5501e5e52638SMatthew G. Knepley } 5502e5e52638SMatthew G. Knepley 5503e5e52638SMatthew G. Knepley /*@ 550420f4b53cSBarry Smith DMGetDS - Get the default `PetscDS` 5505e5e52638SMatthew G. Knepley 550620f4b53cSBarry Smith Not Collective 5507e5e52638SMatthew G. Knepley 5508e5e52638SMatthew G. Knepley Input Parameter: 550920f4b53cSBarry Smith . dm - The `DM` 5510e5e52638SMatthew G. Knepley 5511e5e52638SMatthew G. Knepley Output Parameter: 551207218a29SMatthew G. Knepley . ds - The default `PetscDS` 5513e5e52638SMatthew G. Knepley 5514e5e52638SMatthew G. Knepley Level: intermediate 5515e5e52638SMatthew G. Knepley 55161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCellDS()`, `DMGetRegionDS()` 5517e5e52638SMatthew G. Knepley @*/ 551807218a29SMatthew G. Knepley PetscErrorCode DMGetDS(DM dm, PetscDS *ds) 5519d71ae5a4SJacob Faibussowitsch { 5520e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5521e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 55224f572ea9SToby Isaac PetscAssertPointer(ds, 2); 552307218a29SMatthew G. Knepley PetscCheck(dm->Nds > 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Need to call DMCreateDS() before calling DMGetDS()"); 552407218a29SMatthew G. Knepley *ds = dm->probs[0].ds; 55253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5526e5e52638SMatthew G. Knepley } 5527e5e52638SMatthew G. Knepley 5528e5e52638SMatthew G. Knepley /*@ 552920f4b53cSBarry Smith DMGetCellDS - Get the `PetscDS` defined on a given cell 5530e5e52638SMatthew G. Knepley 553120f4b53cSBarry Smith Not Collective 5532e5e52638SMatthew G. Knepley 5533e5e52638SMatthew G. Knepley Input Parameters: 553420f4b53cSBarry Smith + dm - The `DM` 553520f4b53cSBarry Smith - point - Cell for the `PetscDS` 5536e5e52638SMatthew G. Knepley 553707218a29SMatthew G. Knepley Output Parameters: 553807218a29SMatthew G. Knepley + ds - The `PetscDS` defined on the given cell 553907218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or NULL if the same ds 5540e5e52638SMatthew G. Knepley 5541e5e52638SMatthew G. Knepley Level: developer 5542e5e52638SMatthew G. Knepley 55431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMSetRegionDS()` 5544e5e52638SMatthew G. Knepley @*/ 554507218a29SMatthew G. Knepley PetscErrorCode DMGetCellDS(DM dm, PetscInt point, PetscDS *ds, PetscDS *dsIn) 5546d71ae5a4SJacob Faibussowitsch { 554707218a29SMatthew G. Knepley PetscDS dsDef = NULL; 5548e5e52638SMatthew G. Knepley PetscInt s; 5549e5e52638SMatthew G. Knepley 5550e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5551e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 55524f572ea9SToby Isaac if (ds) PetscAssertPointer(ds, 3); 55534f572ea9SToby Isaac if (dsIn) PetscAssertPointer(dsIn, 4); 555463a3b9bcSJacob Faibussowitsch PetscCheck(point >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Mesh point cannot be negative: %" PetscInt_FMT, point); 555507218a29SMatthew G. Knepley if (ds) *ds = NULL; 555607218a29SMatthew G. Knepley if (dsIn) *dsIn = NULL; 5557e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 5558e5e52638SMatthew G. Knepley PetscInt val; 5559e5e52638SMatthew G. Knepley 55609371c9d4SSatish Balay if (!dm->probs[s].label) { 556107218a29SMatthew G. Knepley dsDef = dm->probs[s].ds; 55629371c9d4SSatish Balay } else { 55639566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(dm->probs[s].label, point, &val)); 55649371c9d4SSatish Balay if (val >= 0) { 556507218a29SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 556607218a29SMatthew G. Knepley if (dsIn) *dsIn = dm->probs[s].dsIn; 55679371c9d4SSatish Balay break; 55689371c9d4SSatish Balay } 5569e5e52638SMatthew G. Knepley } 5570e5e52638SMatthew G. Knepley } 557107218a29SMatthew G. Knepley if (ds && !*ds) *ds = dsDef; 55723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5573e5e52638SMatthew G. Knepley } 5574e5e52638SMatthew G. Knepley 5575e5e52638SMatthew G. Knepley /*@ 557620f4b53cSBarry Smith DMGetRegionDS - Get the `PetscDS` for a given mesh region, defined by a `DMLabel` 5577e5e52638SMatthew G. Knepley 557820f4b53cSBarry Smith Not Collective 5579e5e52638SMatthew G. Knepley 5580e5e52638SMatthew G. Knepley Input Parameters: 558120f4b53cSBarry Smith + dm - The `DM` 558220f4b53cSBarry Smith - label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh 5583e5e52638SMatthew G. Knepley 5584b3cf3223SMatthew G. Knepley Output Parameters: 558520f4b53cSBarry Smith + fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` 558607218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` 558707218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input in the given region, or `NULL` 5588e5e52638SMatthew G. Knepley 5589e5e52638SMatthew G. Knepley Level: advanced 5590e5e52638SMatthew G. Knepley 559120f4b53cSBarry Smith Note: 559220f4b53cSBarry Smith If a non-`NULL` label is given, but there is no `PetscDS` on that specific label, 559320f4b53cSBarry Smith the `PetscDS` for the full domain (if present) is returned. Returns with 559407218a29SMatthew G. Knepley fields = `NULL` and ds = `NULL` if there is no `PetscDS` for the full domain. 559520f4b53cSBarry Smith 55961cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5597e5e52638SMatthew G. Knepley @*/ 559807218a29SMatthew G. Knepley PetscErrorCode DMGetRegionDS(DM dm, DMLabel label, IS *fields, PetscDS *ds, PetscDS *dsIn) 5599d71ae5a4SJacob Faibussowitsch { 5600e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5601e5e52638SMatthew G. Knepley 5602e5e52638SMatthew G. Knepley PetscFunctionBegin; 5603e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5604e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 56059371c9d4SSatish Balay if (fields) { 56064f572ea9SToby Isaac PetscAssertPointer(fields, 3); 56079371c9d4SSatish Balay *fields = NULL; 56089371c9d4SSatish Balay } 56099371c9d4SSatish Balay if (ds) { 56104f572ea9SToby Isaac PetscAssertPointer(ds, 4); 56119371c9d4SSatish Balay *ds = NULL; 56129371c9d4SSatish Balay } 561307218a29SMatthew G. Knepley if (dsIn) { 56144f572ea9SToby Isaac PetscAssertPointer(dsIn, 5); 561507218a29SMatthew G. Knepley *dsIn = NULL; 561607218a29SMatthew G. Knepley } 5617e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5618154ca461SJed Brown if (dm->probs[s].label == label || !dm->probs[s].label) { 5619b3cf3223SMatthew G. Knepley if (fields) *fields = dm->probs[s].fields; 5620b3cf3223SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 562107218a29SMatthew G. Knepley if (dsIn) *dsIn = dm->probs[s].dsIn; 56223ba16761SJacob Faibussowitsch if (dm->probs[s].label) PetscFunctionReturn(PETSC_SUCCESS); 5623b3cf3223SMatthew G. Knepley } 5624e5e52638SMatthew G. Knepley } 56253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5626e5e52638SMatthew G. Knepley } 5627e5e52638SMatthew G. Knepley 5628e5e52638SMatthew G. Knepley /*@ 5629bb7acecfSBarry Smith DMSetRegionDS - Set the `PetscDS` for a given mesh region, defined by a `DMLabel` 5630083401c6SMatthew G. Knepley 563120f4b53cSBarry Smith Collective 5632083401c6SMatthew G. Knepley 5633083401c6SMatthew G. Knepley Input Parameters: 5634bb7acecfSBarry Smith + dm - The `DM` 563520f4b53cSBarry Smith . label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh 563607218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` for all fields 563707218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region 563807218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS` 5639083401c6SMatthew G. Knepley 564020f4b53cSBarry Smith Level: advanced 564120f4b53cSBarry Smith 5642bb7acecfSBarry Smith Note: 5643bb7acecfSBarry Smith If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`. If the `PetscDS` is replaced, 5644083401c6SMatthew G. Knepley the fields argument is ignored. 5645083401c6SMatthew G. Knepley 56461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionNumDS()`, `DMGetDS()`, `DMGetCellDS()` 5647083401c6SMatthew G. Knepley @*/ 564807218a29SMatthew G. Knepley PetscErrorCode DMSetRegionDS(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 5649d71ae5a4SJacob Faibussowitsch { 5650083401c6SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5651083401c6SMatthew G. Knepley 5652083401c6SMatthew G. Knepley PetscFunctionBegin; 5653083401c6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5654083401c6SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 565507218a29SMatthew G. Knepley if (fields) PetscValidHeaderSpecific(fields, IS_CLASSID, 3); 5656064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 4); 565707218a29SMatthew G. Knepley if (dsIn) PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 5); 5658083401c6SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5659083401c6SMatthew G. Knepley if (dm->probs[s].label == label) { 56609566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 566107218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[s].dsIn)); 5662083401c6SMatthew G. Knepley dm->probs[s].ds = ds; 566307218a29SMatthew G. Knepley dm->probs[s].dsIn = dsIn; 56643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5665083401c6SMatthew G. Knepley } 5666083401c6SMatthew G. Knepley } 56679566063dSJacob Faibussowitsch PetscCall(DMDSEnlarge_Static(dm, Nds + 1)); 56689566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 56699566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 56709566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 567107218a29SMatthew G. Knepley PetscCall(PetscObjectReference((PetscObject)dsIn)); 5672083401c6SMatthew G. Knepley if (!label) { 5673083401c6SMatthew G. Knepley /* Put the NULL label at the front, so it is returned as the default */ 5674083401c6SMatthew G. Knepley for (s = Nds - 1; s >= 0; --s) dm->probs[s + 1] = dm->probs[s]; 5675083401c6SMatthew G. Knepley Nds = 0; 5676083401c6SMatthew G. Knepley } 5677083401c6SMatthew G. Knepley dm->probs[Nds].label = label; 5678083401c6SMatthew G. Knepley dm->probs[Nds].fields = fields; 5679083401c6SMatthew G. Knepley dm->probs[Nds].ds = ds; 568007218a29SMatthew G. Knepley dm->probs[Nds].dsIn = dsIn; 56813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5682083401c6SMatthew G. Knepley } 5683083401c6SMatthew G. Knepley 5684083401c6SMatthew G. Knepley /*@ 568520f4b53cSBarry Smith DMGetRegionNumDS - Get the `PetscDS` for a given mesh region, defined by the region number 5686e5e52638SMatthew G. Knepley 568720f4b53cSBarry Smith Not Collective 5688e5e52638SMatthew G. Knepley 5689e5e52638SMatthew G. Knepley Input Parameters: 569020f4b53cSBarry Smith + dm - The `DM` 5691e5e52638SMatthew G. Knepley - num - The region number, in [0, Nds) 5692e5e52638SMatthew G. Knepley 5693e5e52638SMatthew G. Knepley Output Parameters: 569420f4b53cSBarry Smith + label - The region label, or `NULL` 569520f4b53cSBarry Smith . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` 569607218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` 569707218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input in the given region, or `NULL` 5698e5e52638SMatthew G. Knepley 5699e5e52638SMatthew G. Knepley Level: advanced 5700e5e52638SMatthew G. Knepley 57011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5702e5e52638SMatthew G. Knepley @*/ 570307218a29SMatthew G. Knepley PetscErrorCode DMGetRegionNumDS(DM dm, PetscInt num, DMLabel *label, IS *fields, PetscDS *ds, PetscDS *dsIn) 5704d71ae5a4SJacob Faibussowitsch { 5705e5e52638SMatthew G. Knepley PetscInt Nds; 5706e5e52638SMatthew G. Knepley 5707e5e52638SMatthew G. Knepley PetscFunctionBegin; 5708e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 57099566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 571063a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 5711e5e52638SMatthew G. Knepley if (label) { 57124f572ea9SToby Isaac PetscAssertPointer(label, 3); 5713e5e52638SMatthew G. Knepley *label = dm->probs[num].label; 5714e5e52638SMatthew G. Knepley } 5715b3cf3223SMatthew G. Knepley if (fields) { 57164f572ea9SToby Isaac PetscAssertPointer(fields, 4); 5717b3cf3223SMatthew G. Knepley *fields = dm->probs[num].fields; 5718b3cf3223SMatthew G. Knepley } 5719e5e52638SMatthew G. Knepley if (ds) { 57204f572ea9SToby Isaac PetscAssertPointer(ds, 5); 5721e5e52638SMatthew G. Knepley *ds = dm->probs[num].ds; 5722e5e52638SMatthew G. Knepley } 572307218a29SMatthew G. Knepley if (dsIn) { 57244f572ea9SToby Isaac PetscAssertPointer(dsIn, 6); 572507218a29SMatthew G. Knepley *dsIn = dm->probs[num].dsIn; 572607218a29SMatthew G. Knepley } 57273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5728e5e52638SMatthew G. Knepley } 5729e5e52638SMatthew G. Knepley 5730e5e52638SMatthew G. Knepley /*@ 573120f4b53cSBarry Smith DMSetRegionNumDS - Set the `PetscDS` for a given mesh region, defined by the region number 5732e5e52638SMatthew G. Knepley 573320f4b53cSBarry Smith Not Collective 5734e5e52638SMatthew G. Knepley 5735e5e52638SMatthew G. Knepley Input Parameters: 573620f4b53cSBarry Smith + dm - The `DM` 5737083401c6SMatthew G. Knepley . num - The region number, in [0, Nds) 573820f4b53cSBarry Smith . label - The region label, or `NULL` 573907218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` to prevent setting 574007218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` to prevent setting 574107218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS` 5742e5e52638SMatthew G. Knepley 5743e5e52638SMatthew G. Knepley Level: advanced 5744e5e52638SMatthew G. Knepley 57451cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5746e5e52638SMatthew G. Knepley @*/ 574707218a29SMatthew G. Knepley PetscErrorCode DMSetRegionNumDS(DM dm, PetscInt num, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 5748d71ae5a4SJacob Faibussowitsch { 5749083401c6SMatthew G. Knepley PetscInt Nds; 5750e5e52638SMatthew G. Knepley 5751e5e52638SMatthew G. Knepley PetscFunctionBegin; 5752e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5753ad540459SPierre Jolivet if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 57549566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 575563a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 57569566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 57579566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[num].label)); 5758083401c6SMatthew G. Knepley dm->probs[num].label = label; 5759083401c6SMatthew G. Knepley if (fields) { 5760083401c6SMatthew G. Knepley PetscValidHeaderSpecific(fields, IS_CLASSID, 4); 57619566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 57629566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[num].fields)); 5763083401c6SMatthew G. Knepley dm->probs[num].fields = fields; 5764e5e52638SMatthew G. Knepley } 5765083401c6SMatthew G. Knepley if (ds) { 5766083401c6SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 5); 57679566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 57689566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[num].ds)); 5769083401c6SMatthew G. Knepley dm->probs[num].ds = ds; 5770083401c6SMatthew G. Knepley } 577107218a29SMatthew G. Knepley if (dsIn) { 577207218a29SMatthew G. Knepley PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 6); 577307218a29SMatthew G. Knepley PetscCall(PetscObjectReference((PetscObject)dsIn)); 577407218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[num].dsIn)); 577507218a29SMatthew G. Knepley dm->probs[num].dsIn = dsIn; 577607218a29SMatthew G. Knepley } 57773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5778e5e52638SMatthew G. Knepley } 5779e5e52638SMatthew G. Knepley 5780e5e52638SMatthew G. Knepley /*@ 578120f4b53cSBarry Smith DMFindRegionNum - Find the region number for a given `PetscDS`, or -1 if it is not found. 57821d3af9e0SMatthew G. Knepley 578320f4b53cSBarry Smith Not Collective 57841d3af9e0SMatthew G. Knepley 57851d3af9e0SMatthew G. Knepley Input Parameters: 578620f4b53cSBarry Smith + dm - The `DM` 578720f4b53cSBarry Smith - ds - The `PetscDS` defined on the given region 57881d3af9e0SMatthew G. Knepley 57891d3af9e0SMatthew G. Knepley Output Parameter: 57901d3af9e0SMatthew G. Knepley . num - The region number, in [0, Nds), or -1 if not found 57911d3af9e0SMatthew G. Knepley 57921d3af9e0SMatthew G. Knepley Level: advanced 57931d3af9e0SMatthew G. Knepley 57941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 57951d3af9e0SMatthew G. Knepley @*/ 5796d71ae5a4SJacob Faibussowitsch PetscErrorCode DMFindRegionNum(DM dm, PetscDS ds, PetscInt *num) 5797d71ae5a4SJacob Faibussowitsch { 57981d3af9e0SMatthew G. Knepley PetscInt Nds, n; 57991d3af9e0SMatthew G. Knepley 58001d3af9e0SMatthew G. Knepley PetscFunctionBegin; 58011d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 58021d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 2); 58034f572ea9SToby Isaac PetscAssertPointer(num, 3); 58049566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 58059371c9d4SSatish Balay for (n = 0; n < Nds; ++n) 58069371c9d4SSatish Balay if (ds == dm->probs[n].ds) break; 58071d3af9e0SMatthew G. Knepley if (n >= Nds) *num = -1; 58081d3af9e0SMatthew G. Knepley else *num = n; 58093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58101d3af9e0SMatthew G. Knepley } 58111d3af9e0SMatthew G. Knepley 5812cc4c1da9SBarry Smith /*@ 5813bb7acecfSBarry Smith DMCreateFEDefault - Create a `PetscFE` based on the celltype for the mesh 58142df84da0SMatthew G. Knepley 581520f4b53cSBarry Smith Not Collective 58162df84da0SMatthew G. Knepley 5817f1a722f8SMatthew G. Knepley Input Parameters: 5818bb7acecfSBarry Smith + dm - The `DM` 58192df84da0SMatthew G. Knepley . Nc - The number of components for the field 582020f4b53cSBarry Smith . prefix - The options prefix for the output `PetscFE`, or `NULL` 5821bb7acecfSBarry Smith - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree 58222df84da0SMatthew G. Knepley 58232df84da0SMatthew G. Knepley Output Parameter: 5824bb7acecfSBarry Smith . fem - The `PetscFE` 58252df84da0SMatthew G. Knepley 582620f4b53cSBarry Smith Level: intermediate 582720f4b53cSBarry Smith 5828bb7acecfSBarry Smith Note: 5829bb7acecfSBarry Smith This is a convenience method that just calls `PetscFECreateByCell()` underneath. 58302df84da0SMatthew G. Knepley 58311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscFECreateByCell()`, `DMAddField()`, `DMCreateDS()`, `DMGetCellDS()`, `DMGetRegionDS()` 58322df84da0SMatthew G. Knepley @*/ 5833d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFEDefault(DM dm, PetscInt Nc, const char prefix[], PetscInt qorder, PetscFE *fem) 5834d71ae5a4SJacob Faibussowitsch { 58352df84da0SMatthew G. Knepley DMPolytopeType ct; 58362df84da0SMatthew G. Knepley PetscInt dim, cStart; 58372df84da0SMatthew G. Knepley 58382df84da0SMatthew G. Knepley PetscFunctionBegin; 58392df84da0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 58402df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 2); 58414f572ea9SToby Isaac if (prefix) PetscAssertPointer(prefix, 3); 58422df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, qorder, 4); 58434f572ea9SToby Isaac PetscAssertPointer(fem, 5); 58449566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 58459566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 58469566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 58479566063dSJacob Faibussowitsch PetscCall(PetscFECreateByCell(PETSC_COMM_SELF, dim, Nc, ct, prefix, qorder, fem)); 58483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58492df84da0SMatthew G. Knepley } 58502df84da0SMatthew G. Knepley 58511d3af9e0SMatthew G. Knepley /*@ 5852bb7acecfSBarry Smith DMCreateDS - Create the discrete systems for the `DM` based upon the fields added to the `DM` 5853e5e52638SMatthew G. Knepley 585420f4b53cSBarry Smith Collective 5855e5e52638SMatthew G. Knepley 5856e5e52638SMatthew G. Knepley Input Parameter: 5857bb7acecfSBarry Smith . dm - The `DM` 5858e5e52638SMatthew G. Knepley 585920f4b53cSBarry Smith Options Database Key: 5860bb7acecfSBarry Smith . -dm_petscds_view - View all the `PetscDS` objects in this `DM` 586145480ffeSMatthew G. Knepley 586220f4b53cSBarry Smith Level: intermediate 586320f4b53cSBarry Smith 58641cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetField`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 5865e5e52638SMatthew G. Knepley @*/ 5866d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDS(DM dm) 5867d71ae5a4SJacob Faibussowitsch { 5868e5e52638SMatthew G. Knepley MPI_Comm comm; 5869083401c6SMatthew G. Knepley PetscDS dsDef; 5870083401c6SMatthew G. Knepley DMLabel *labelSet; 5871f9244615SMatthew G. Knepley PetscInt dE, Nf = dm->Nf, f, s, Nl, l, Ndef, k; 5872f9244615SMatthew G. Knepley PetscBool doSetup = PETSC_TRUE, flg; 5873e5e52638SMatthew G. Knepley 5874e5e52638SMatthew G. Knepley PetscFunctionBegin; 5875e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 58763ba16761SJacob Faibussowitsch if (!dm->fields) PetscFunctionReturn(PETSC_SUCCESS); 58779566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 58789566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dE)); 5879083401c6SMatthew G. Knepley /* Determine how many regions we have */ 58809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nf, &labelSet)); 5881083401c6SMatthew G. Knepley Nl = 0; 5882083401c6SMatthew G. Knepley Ndef = 0; 5883083401c6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5884083401c6SMatthew G. Knepley DMLabel label = dm->fields[f].label; 5885083401c6SMatthew G. Knepley PetscInt l; 5886083401c6SMatthew G. Knepley 5887f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 5888f918ec44SMatthew G. Knepley /* Move CEED context to discretizations */ 5889f918ec44SMatthew G. Knepley { 5890f918ec44SMatthew G. Knepley PetscClassId id; 5891f918ec44SMatthew G. Knepley 58929566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(dm->fields[f].disc, &id)); 5893f918ec44SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 5894f918ec44SMatthew G. Knepley Ceed ceed; 5895f918ec44SMatthew G. Knepley 58969566063dSJacob Faibussowitsch PetscCall(DMGetCeed(dm, &ceed)); 58979566063dSJacob Faibussowitsch PetscCall(PetscFESetCeed((PetscFE)dm->fields[f].disc, ceed)); 5898f918ec44SMatthew G. Knepley } 5899f918ec44SMatthew G. Knepley } 5900f918ec44SMatthew G. Knepley #endif 59019371c9d4SSatish Balay if (!label) { 59029371c9d4SSatish Balay ++Ndef; 59039371c9d4SSatish Balay continue; 59049371c9d4SSatish Balay } 59059371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 59069371c9d4SSatish Balay if (label == labelSet[l]) break; 5907083401c6SMatthew G. Knepley if (l < Nl) continue; 5908083401c6SMatthew G. Knepley labelSet[Nl++] = label; 5909083401c6SMatthew G. Knepley } 5910083401c6SMatthew G. Knepley /* Create default DS if there are no labels to intersect with */ 591107218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL)); 5912083401c6SMatthew G. Knepley if (!dsDef && Ndef && !Nl) { 5913b3cf3223SMatthew G. Knepley IS fields; 5914b3cf3223SMatthew G. Knepley PetscInt *fld, nf; 5915b3cf3223SMatthew G. Knepley 59169371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59179371c9d4SSatish Balay if (!dm->fields[f].label) ++nf; 59187a8be351SBarry Smith PetscCheck(nf, comm, PETSC_ERR_PLIB, "All fields have labels, but we are trying to create a default DS"); 59199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 59209371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59219371c9d4SSatish Balay if (!dm->fields[f].label) fld[nf++] = f; 59229566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 59239566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 59249566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 59259566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 592688f0c812SMatthew G. Knepley 59279566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 592807218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, NULL, fields, dsDef, NULL)); 59299566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 59309566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fields)); 59312df9ee95SMatthew G. Knepley } 593207218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL)); 59339566063dSJacob Faibussowitsch if (dsDef) PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 5934083401c6SMatthew G. Knepley /* Intersect labels with default fields */ 5935083401c6SMatthew G. Knepley if (Ndef && Nl) { 59360122748bSMatthew G. Knepley DM plex; 5937083401c6SMatthew G. Knepley DMLabel cellLabel; 5938083401c6SMatthew G. Knepley IS fieldIS, allcellIS, defcellIS = NULL; 5939083401c6SMatthew G. Knepley PetscInt *fields; 5940083401c6SMatthew G. Knepley const PetscInt *cells; 5941083401c6SMatthew G. Knepley PetscInt depth, nf = 0, n, c; 59420122748bSMatthew G. Knepley 59439566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 59449566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(plex, &depth)); 59459566063dSJacob Faibussowitsch PetscCall(DMGetStratumIS(plex, "dim", depth, &allcellIS)); 59469566063dSJacob Faibussowitsch if (!allcellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &allcellIS)); 59475fedec97SMatthew G. Knepley /* TODO This looks like it only works for one label */ 5948083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 5949083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 5950083401c6SMatthew G. Knepley IS pointIS; 5951083401c6SMatthew G. Knepley 59529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 59539566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, 1, &pointIS)); 59549566063dSJacob Faibussowitsch PetscCall(ISDifference(allcellIS, pointIS, &defcellIS)); 59559566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 5956083401c6SMatthew G. Knepley } 59579566063dSJacob Faibussowitsch PetscCall(ISDestroy(&allcellIS)); 5958083401c6SMatthew G. Knepley 59599566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "defaultCells", &cellLabel)); 59609566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(defcellIS, &n)); 59619566063dSJacob Faibussowitsch PetscCall(ISGetIndices(defcellIS, &cells)); 59629566063dSJacob Faibussowitsch for (c = 0; c < n; ++c) PetscCall(DMLabelSetValue(cellLabel, cells[c], 1)); 59639566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(defcellIS, &cells)); 59649566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 59659566063dSJacob Faibussowitsch PetscCall(DMPlexLabelComplete(plex, cellLabel)); 5966083401c6SMatthew G. Knepley 59679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ndef, &fields)); 59689371c9d4SSatish Balay for (f = 0; f < Nf; ++f) 59699371c9d4SSatish Balay if (!dm->fields[f].label) fields[nf++] = f; 59709566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fieldIS)); 59719566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fieldIS, "dm_fields_")); 59729566063dSJacob Faibussowitsch PetscCall(ISSetType(fieldIS, ISGENERAL)); 59739566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fieldIS, nf, fields, PETSC_OWN_POINTER)); 5974083401c6SMatthew G. Knepley 59759566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 597607218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, cellLabel, fieldIS, dsDef, NULL)); 59779566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 59789566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&cellLabel)); 59799566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 59809566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fieldIS)); 59819566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 5982083401c6SMatthew G. Knepley } 5983083401c6SMatthew G. Knepley /* Create label DSes 5984083401c6SMatthew G. Knepley - WE ONLY SUPPORT IDENTICAL OR DISJOINT LABELS 5985083401c6SMatthew G. Knepley */ 5986083401c6SMatthew G. Knepley /* TODO Should check that labels are disjoint */ 5987083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 5988083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 598907218a29SMatthew G. Knepley PetscDS ds, dsIn = NULL; 5990083401c6SMatthew G. Knepley IS fields; 5991083401c6SMatthew G. Knepley PetscInt *fld, nf; 5992083401c6SMatthew G. Knepley 59939566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 59949371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59959371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) ++nf; 59969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 59979371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59989371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) fld[nf++] = f; 59999566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 60009566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 60019566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 60029566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 60039566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(ds, dE)); 6004083401c6SMatthew G. Knepley { 6005083401c6SMatthew G. Knepley DMPolytopeType ct; 6006083401c6SMatthew G. Knepley PetscInt lStart, lEnd; 60075fedec97SMatthew G. Knepley PetscBool isCohesiveLocal = PETSC_FALSE, isCohesive; 60080122748bSMatthew G. Knepley 60099566063dSJacob Faibussowitsch PetscCall(DMLabelGetBounds(label, &lStart, &lEnd)); 6010665f567fSMatthew G. Knepley if (lStart >= 0) { 60119566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, lStart, &ct)); 6012412e9a14SMatthew G. Knepley switch (ct) { 6013412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 6014412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 6015412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 6016d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_QUAD_PRISM_TENSOR: 6017d71ae5a4SJacob Faibussowitsch isCohesiveLocal = PETSC_TRUE; 6018d71ae5a4SJacob Faibussowitsch break; 6019d71ae5a4SJacob Faibussowitsch default: 6020d71ae5a4SJacob Faibussowitsch break; 6021412e9a14SMatthew G. Knepley } 6022665f567fSMatthew G. Knepley } 6023712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(&isCohesiveLocal, &isCohesive, 1, MPIU_BOOL, MPI_LOR, comm)); 602407218a29SMatthew G. Knepley if (isCohesive) { 602507218a29SMatthew G. Knepley PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsIn)); 602607218a29SMatthew G. Knepley PetscCall(PetscDSSetCoordinateDimension(dsIn, dE)); 602707218a29SMatthew G. Knepley } 60285fedec97SMatthew G. Knepley for (f = 0, nf = 0; f < Nf; ++f) { 60295fedec97SMatthew G. Knepley if (label == dm->fields[f].label || !dm->fields[f].label) { 60305fedec97SMatthew G. Knepley if (label == dm->fields[f].label) { 60319566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, nf, NULL)); 60329566063dSJacob Faibussowitsch PetscCall(PetscDSSetCohesive(ds, nf, isCohesive)); 603307218a29SMatthew G. Knepley if (dsIn) { 603407218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, nf, NULL)); 603507218a29SMatthew G. Knepley PetscCall(PetscDSSetCohesive(dsIn, nf, isCohesive)); 603607218a29SMatthew G. Knepley } 60375fedec97SMatthew G. Knepley } 60385fedec97SMatthew G. Knepley ++nf; 60395fedec97SMatthew G. Knepley } 60405fedec97SMatthew G. Knepley } 6041e5e52638SMatthew G. Knepley } 604207218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, label, fields, ds, dsIn)); 604307218a29SMatthew G. Knepley PetscCall(ISDestroy(&fields)); 60449566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 604507218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dsIn)); 6046e5e52638SMatthew G. Knepley } 60479566063dSJacob Faibussowitsch PetscCall(PetscFree(labelSet)); 6048e5e52638SMatthew G. Knepley /* Set fields in DSes */ 6049083401c6SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 6050083401c6SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 605107218a29SMatthew G. Knepley PetscDS dsIn = dm->probs[s].dsIn; 6052083401c6SMatthew G. Knepley IS fields = dm->probs[s].fields; 6053083401c6SMatthew G. Knepley const PetscInt *fld; 60545fedec97SMatthew G. Knepley PetscInt nf, dsnf; 60555fedec97SMatthew G. Knepley PetscBool isCohesive; 6056e5e52638SMatthew G. Knepley 60579566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsnf)); 60589566063dSJacob Faibussowitsch PetscCall(PetscDSIsCohesive(ds, &isCohesive)); 60599566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(fields, &nf)); 60609566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fields, &fld)); 6061083401c6SMatthew G. Knepley for (f = 0; f < nf; ++f) { 6062083401c6SMatthew G. Knepley PetscObject disc = dm->fields[fld[f]].disc; 60635fedec97SMatthew G. Knepley PetscBool isCohesiveField; 6064e5e52638SMatthew G. Knepley PetscClassId id; 6065e5e52638SMatthew G. Knepley 60665fedec97SMatthew G. Knepley /* Handle DS with no fields */ 60679566063dSJacob Faibussowitsch if (dsnf) PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField)); 60685fedec97SMatthew G. Knepley /* If this is a cohesive cell, then regular fields need the lower dimensional discretization */ 606907218a29SMatthew G. Knepley if (isCohesive) { 607007218a29SMatthew G. Knepley if (!isCohesiveField) { 607107218a29SMatthew G. Knepley PetscObject bdDisc; 607207218a29SMatthew G. Knepley 607307218a29SMatthew G. Knepley PetscCall(PetscFEGetHeightSubspace((PetscFE)disc, 1, (PetscFE *)&bdDisc)); 607407218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(ds, f, bdDisc)); 607507218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, f, disc)); 607607218a29SMatthew G. Knepley } else { 60779566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, f, disc)); 607807218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, f, disc)); 607907218a29SMatthew G. Knepley } 608007218a29SMatthew G. Knepley } else { 608107218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(ds, f, disc)); 608207218a29SMatthew G. Knepley } 6083083401c6SMatthew G. Knepley /* We allow people to have placeholder fields and construct the Section by hand */ 60849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 6085e5e52638SMatthew G. Knepley if ((id != PETSCFE_CLASSID) && (id != PETSCFV_CLASSID)) doSetup = PETSC_FALSE; 6086e5e52638SMatthew G. Knepley } 60879566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fields, &fld)); 6088e5e52638SMatthew G. Knepley } 6089f9244615SMatthew G. Knepley /* Allow k-jet tabulation */ 60909566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)dm)->prefix, "-dm_ds_jet_degree", &k, &flg)); 6091f9244615SMatthew G. Knepley if (flg) { 60923b4aee56SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 60933b4aee56SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 609407218a29SMatthew G. Knepley PetscDS dsIn = dm->probs[s].dsIn; 60953b4aee56SMatthew G. Knepley PetscInt Nf, f; 60963b4aee56SMatthew G. Knepley 60979566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 609807218a29SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 609907218a29SMatthew G. Knepley PetscCall(PetscDSSetJetDegree(ds, f, k)); 610007218a29SMatthew G. Knepley if (dsIn) PetscCall(PetscDSSetJetDegree(dsIn, f, k)); 610107218a29SMatthew G. Knepley } 61023b4aee56SMatthew G. Knepley } 6103f9244615SMatthew G. Knepley } 6104e5e52638SMatthew G. Knepley /* Setup DSes */ 6105e5e52638SMatthew G. Knepley if (doSetup) { 610607218a29SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 6107cf1363e4SMatthew G. Knepley if (dm->setfromoptionscalled) { 6108cf1363e4SMatthew G. Knepley PetscCall(PetscDSSetFromOptions(dm->probs[s].ds)); 6109cf1363e4SMatthew G. Knepley if (dm->probs[s].dsIn) PetscCall(PetscDSSetFromOptions(dm->probs[s].dsIn)); 6110cf1363e4SMatthew G. Knepley } 611107218a29SMatthew G. Knepley PetscCall(PetscDSSetUp(dm->probs[s].ds)); 611207218a29SMatthew G. Knepley if (dm->probs[s].dsIn) PetscCall(PetscDSSetUp(dm->probs[s].dsIn)); 611307218a29SMatthew G. Knepley } 6114e5e52638SMatthew G. Knepley } 61153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6116e5e52638SMatthew G. Knepley } 6117e5e52638SMatthew G. Knepley 6118e5e52638SMatthew G. Knepley /*@ 6119d2b2dc1eSMatthew G. Knepley DMUseTensorOrder - Use a tensor product closure ordering for the default section 6120d2b2dc1eSMatthew G. Knepley 6121d2b2dc1eSMatthew G. Knepley Input Parameters: 6122d2b2dc1eSMatthew G. Knepley + dm - The DM 6123d2b2dc1eSMatthew G. Knepley - tensor - Flag for tensor order 6124d2b2dc1eSMatthew G. Knepley 6125d2b2dc1eSMatthew G. Knepley Level: developer 6126d2b2dc1eSMatthew G. Knepley 6127d2b2dc1eSMatthew G. Knepley .seealso: `DMPlexSetClosurePermutationTensor()`, `PetscSectionResetClosurePermutation()` 6128d2b2dc1eSMatthew G. Knepley @*/ 6129d2b2dc1eSMatthew G. Knepley PetscErrorCode DMUseTensorOrder(DM dm, PetscBool tensor) 6130d2b2dc1eSMatthew G. Knepley { 6131d2b2dc1eSMatthew G. Knepley PetscInt Nf; 6132d2b2dc1eSMatthew G. Knepley PetscBool reorder = PETSC_TRUE, isPlex; 6133d2b2dc1eSMatthew G. Knepley 6134d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 6135d2b2dc1eSMatthew G. Knepley PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 6136d2b2dc1eSMatthew G. Knepley PetscCall(DMGetNumFields(dm, &Nf)); 6137d2b2dc1eSMatthew G. Knepley for (PetscInt f = 0; f < Nf; ++f) { 6138d2b2dc1eSMatthew G. Knepley PetscObject obj; 6139d2b2dc1eSMatthew G. Knepley PetscClassId id; 6140d2b2dc1eSMatthew G. Knepley 6141d2b2dc1eSMatthew G. Knepley PetscCall(DMGetField(dm, f, NULL, &obj)); 6142d2b2dc1eSMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 6143d2b2dc1eSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 6144d2b2dc1eSMatthew G. Knepley PetscSpace sp; 6145d2b2dc1eSMatthew G. Knepley PetscBool tensor; 6146d2b2dc1eSMatthew G. Knepley 6147d2b2dc1eSMatthew G. Knepley PetscCall(PetscFEGetBasisSpace((PetscFE)obj, &sp)); 6148d2b2dc1eSMatthew G. Knepley PetscCall(PetscSpacePolynomialGetTensor(sp, &tensor)); 6149d2b2dc1eSMatthew G. Knepley reorder = reorder && tensor ? PETSC_TRUE : PETSC_FALSE; 6150d2b2dc1eSMatthew G. Knepley } else reorder = PETSC_FALSE; 6151d2b2dc1eSMatthew G. Knepley } 6152d2b2dc1eSMatthew G. Knepley if (tensor) { 6153d2b2dc1eSMatthew G. Knepley if (reorder && isPlex) PetscCall(DMPlexSetClosurePermutationTensor(dm, PETSC_DETERMINE, NULL)); 6154d2b2dc1eSMatthew G. Knepley } else { 6155d2b2dc1eSMatthew G. Knepley PetscSection s; 6156d2b2dc1eSMatthew G. Knepley 6157d2b2dc1eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm, &s)); 6158d2b2dc1eSMatthew G. Knepley if (s) PetscCall(PetscSectionResetClosurePermutation(s)); 6159d2b2dc1eSMatthew G. Knepley } 6160d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 6161d2b2dc1eSMatthew G. Knepley } 6162d2b2dc1eSMatthew G. Knepley 6163d2b2dc1eSMatthew G. Knepley /*@ 6164bb7acecfSBarry Smith DMComputeExactSolution - Compute the exact solution for a given `DM`, using the `PetscDS` information. 61657f96f943SMatthew G. Knepley 616620f4b53cSBarry Smith Collective 6167f2cacb80SMatthew G. Knepley 61687f96f943SMatthew G. Knepley Input Parameters: 6169bb7acecfSBarry Smith + dm - The `DM` 61707f96f943SMatthew G. Knepley - time - The time 61717f96f943SMatthew G. Knepley 61727f96f943SMatthew G. Knepley Output Parameters: 617320f4b53cSBarry Smith + u - The vector will be filled with exact solution values, or `NULL` 617420f4b53cSBarry Smith - u_t - The vector will be filled with the time derivative of exact solution values, or `NULL` 617520f4b53cSBarry Smith 617620f4b53cSBarry Smith Level: developer 61777f96f943SMatthew G. Knepley 6178bb7acecfSBarry Smith Note: 6179bb7acecfSBarry Smith The user must call `PetscDSSetExactSolution()` before using this routine 61807f96f943SMatthew G. Knepley 61811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscDSSetExactSolution()` 61827f96f943SMatthew G. Knepley @*/ 6183d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeExactSolution(DM dm, PetscReal time, Vec u, Vec u_t) 6184d71ae5a4SJacob Faibussowitsch { 61857f96f943SMatthew G. Knepley PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 61867f96f943SMatthew G. Knepley void **ectxs; 6187f60fa741SMatthew G. Knepley Vec locu, locu_t; 61887f96f943SMatthew G. Knepley PetscInt Nf, Nds, s; 61897f96f943SMatthew G. Knepley 61907f96f943SMatthew G. Knepley PetscFunctionBegin; 6191f2cacb80SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6192f60fa741SMatthew G. Knepley if (u) { 6193f60fa741SMatthew G. Knepley PetscValidHeaderSpecific(u, VEC_CLASSID, 3); 6194f60fa741SMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &locu)); 6195f60fa741SMatthew G. Knepley PetscCall(VecSet(locu, 0.)); 6196f60fa741SMatthew G. Knepley } 6197f60fa741SMatthew G. Knepley if (u_t) { 6198f60fa741SMatthew G. Knepley PetscValidHeaderSpecific(u_t, VEC_CLASSID, 4); 6199f60fa741SMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &locu_t)); 6200f60fa741SMatthew G. Knepley PetscCall(VecSet(locu_t, 0.)); 6201f60fa741SMatthew G. Knepley } 62029566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 62039566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(Nf, &exacts, Nf, &ectxs)); 62049566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 62057f96f943SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 62067f96f943SMatthew G. Knepley PetscDS ds; 62077f96f943SMatthew G. Knepley DMLabel label; 62087f96f943SMatthew G. Knepley IS fieldIS; 62097f96f943SMatthew G. Knepley const PetscInt *fields, id = 1; 62107f96f943SMatthew G. Knepley PetscInt dsNf, f; 62117f96f943SMatthew G. Knepley 621207218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 62139566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 62149566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fieldIS, &fields)); 62159566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 62169566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6217f2cacb80SMatthew G. Knepley if (u) { 6218f60fa741SMatthew G. Knepley for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolution(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]])); 6219f60fa741SMatthew G. Knepley if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu)); 6220f60fa741SMatthew G. Knepley else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu)); 62217f96f943SMatthew G. Knepley } 6222f2cacb80SMatthew G. Knepley if (u_t) { 62239566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 62249566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6225f60fa741SMatthew G. Knepley for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolutionTimeDerivative(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]])); 6226f60fa741SMatthew G. Knepley if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu_t)); 6227f60fa741SMatthew G. Knepley else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu_t)); 6228f2cacb80SMatthew G. Knepley } 62299566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fieldIS, &fields)); 6230f2cacb80SMatthew G. Knepley } 6231f2cacb80SMatthew G. Knepley if (u) { 62329566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution")); 62339566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u, "exact_")); 6234f2cacb80SMatthew G. Knepley } 6235f2cacb80SMatthew G. Knepley if (u_t) { 62369566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution Time Derivative")); 62379566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u_t, "exact_t_")); 6238f2cacb80SMatthew G. Knepley } 62399566063dSJacob Faibussowitsch PetscCall(PetscFree2(exacts, ectxs)); 6240f60fa741SMatthew G. Knepley if (u) { 6241f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, locu, INSERT_ALL_VALUES, u)); 6242f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, locu, INSERT_ALL_VALUES, u)); 6243f60fa741SMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &locu)); 6244f60fa741SMatthew G. Knepley } 6245f60fa741SMatthew G. Knepley if (u_t) { 6246f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, locu_t, INSERT_ALL_VALUES, u_t)); 6247f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, locu_t, INSERT_ALL_VALUES, u_t)); 6248f60fa741SMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &locu_t)); 6249f60fa741SMatthew G. Knepley } 62503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 62517f96f943SMatthew G. Knepley } 62527f96f943SMatthew G. Knepley 625307218a29SMatthew G. Knepley static PetscErrorCode DMTransferDS_Internal(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 6254d71ae5a4SJacob Faibussowitsch { 625507218a29SMatthew G. Knepley PetscDS dsNew, dsInNew = NULL; 625645480ffeSMatthew G. Knepley 625745480ffeSMatthew G. Knepley PetscFunctionBegin; 62589566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)ds), &dsNew)); 625907218a29SMatthew G. Knepley PetscCall(PetscDSCopy(ds, dm, dsNew)); 626007218a29SMatthew G. Knepley if (dsIn) { 626107218a29SMatthew G. Knepley PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)dsIn), &dsInNew)); 626207218a29SMatthew G. Knepley PetscCall(PetscDSCopy(dsIn, dm, dsInNew)); 626345480ffeSMatthew G. Knepley } 626407218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, label, fields, dsNew, dsInNew)); 62659566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsNew)); 626607218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dsInNew)); 62673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 626845480ffeSMatthew G. Knepley } 626945480ffeSMatthew G. Knepley 62707f96f943SMatthew G. Knepley /*@ 6271bb7acecfSBarry Smith DMCopyDS - Copy the discrete systems for the `DM` into another `DM` 6272e5e52638SMatthew G. Knepley 627320f4b53cSBarry Smith Collective 6274e5e52638SMatthew G. Knepley 6275e5e52638SMatthew G. Knepley Input Parameter: 6276bb7acecfSBarry Smith . dm - The `DM` 6277e5e52638SMatthew G. Knepley 6278e5e52638SMatthew G. Knepley Output Parameter: 6279bb7acecfSBarry Smith . newdm - The `DM` 6280e5e52638SMatthew G. Knepley 6281e5e52638SMatthew G. Knepley Level: advanced 6282e5e52638SMatthew G. Knepley 62831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 6284e5e52638SMatthew G. Knepley @*/ 6285d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDS(DM dm, DM newdm) 6286d71ae5a4SJacob Faibussowitsch { 6287e5e52638SMatthew G. Knepley PetscInt Nds, s; 6288e5e52638SMatthew G. Knepley 6289e5e52638SMatthew G. Knepley PetscFunctionBegin; 62903ba16761SJacob Faibussowitsch if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS); 62919566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 62929566063dSJacob Faibussowitsch PetscCall(DMClearDS(newdm)); 6293e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 6294e5e52638SMatthew G. Knepley DMLabel label; 6295b3cf3223SMatthew G. Knepley IS fields; 629607218a29SMatthew G. Knepley PetscDS ds, dsIn, newds; 6297783e2ec8SMatthew G. Knepley PetscInt Nbd, bd; 6298e5e52638SMatthew G. Knepley 629907218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fields, &ds, &dsIn)); 6300b8025e53SMatthew G. Knepley /* TODO: We need to change all keys from labels in the old DM to labels in the new DM */ 630107218a29SMatthew G. Knepley PetscCall(DMTransferDS_Internal(newdm, label, fields, ds, dsIn)); 6302d5b43468SJose E. Roman /* Complete new labels in the new DS */ 630307218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(newdm, label, NULL, &newds, NULL)); 63049566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(newds, &Nbd)); 6305783e2ec8SMatthew G. Knepley for (bd = 0; bd < Nbd; ++bd) { 6306b8025e53SMatthew G. Knepley PetscWeakForm wf; 630745480ffeSMatthew G. Knepley DMLabel label; 6308783e2ec8SMatthew G. Knepley PetscInt field; 6309783e2ec8SMatthew G. Knepley 63109566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(newds, bd, &wf, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 63119566063dSJacob Faibussowitsch PetscCall(PetscWeakFormReplaceLabel(wf, label)); 6312783e2ec8SMatthew G. Knepley } 6313e5e52638SMatthew G. Knepley } 6314799db056SMatthew G. Knepley PetscCall(DMCompleteBCLabels_Internal(newdm)); 63153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6316e5e52638SMatthew G. Knepley } 6317e5e52638SMatthew G. Knepley 6318e5e52638SMatthew G. Knepley /*@ 6319bb7acecfSBarry Smith DMCopyDisc - Copy the fields and discrete systems for the `DM` into another `DM` 6320e5e52638SMatthew G. Knepley 632120f4b53cSBarry Smith Collective 6322e5e52638SMatthew G. Knepley 6323e5e52638SMatthew G. Knepley Input Parameter: 6324bb7acecfSBarry Smith . dm - The `DM` 6325e5e52638SMatthew G. Knepley 6326e5e52638SMatthew G. Knepley Output Parameter: 6327bb7acecfSBarry Smith . newdm - The `DM` 6328e5e52638SMatthew G. Knepley 6329e5e52638SMatthew G. Knepley Level: advanced 6330e5e52638SMatthew G. Knepley 633173ff1848SBarry Smith Developer Note: 6332bb7acecfSBarry Smith Really ugly name, nothing in PETSc is called a `Disc` plus it is an ugly abbreviation 6333bb7acecfSBarry Smith 63341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMCopyDS()` 6335e5e52638SMatthew G. Knepley @*/ 6336d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDisc(DM dm, DM newdm) 6337d71ae5a4SJacob Faibussowitsch { 6338e5e52638SMatthew G. Knepley PetscFunctionBegin; 63399566063dSJacob Faibussowitsch PetscCall(DMCopyFields(dm, newdm)); 63409566063dSJacob Faibussowitsch PetscCall(DMCopyDS(dm, newdm)); 63413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6342e5e52638SMatthew G. Knepley } 6343e5e52638SMatthew G. Knepley 6344c73cfb54SMatthew G. Knepley /*@ 6345bb7acecfSBarry Smith DMGetDimension - Return the topological dimension of the `DM` 6346c73cfb54SMatthew G. Knepley 634720f4b53cSBarry Smith Not Collective 6348c73cfb54SMatthew G. Knepley 6349c73cfb54SMatthew G. Knepley Input Parameter: 6350bb7acecfSBarry Smith . dm - The `DM` 6351c73cfb54SMatthew G. Knepley 6352c73cfb54SMatthew G. Knepley Output Parameter: 6353c73cfb54SMatthew G. Knepley . dim - The topological dimension 6354c73cfb54SMatthew G. Knepley 6355c73cfb54SMatthew G. Knepley Level: beginner 6356c73cfb54SMatthew G. Knepley 63571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDimension()`, `DMCreate()` 6358c73cfb54SMatthew G. Knepley @*/ 6359d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimension(DM dm, PetscInt *dim) 6360d71ae5a4SJacob Faibussowitsch { 6361c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6362c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 63634f572ea9SToby Isaac PetscAssertPointer(dim, 2); 6364c73cfb54SMatthew G. Knepley *dim = dm->dim; 63653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6366c73cfb54SMatthew G. Knepley } 6367c73cfb54SMatthew G. Knepley 6368c73cfb54SMatthew G. Knepley /*@ 6369bb7acecfSBarry Smith DMSetDimension - Set the topological dimension of the `DM` 6370c73cfb54SMatthew G. Knepley 637120f4b53cSBarry Smith Collective 6372c73cfb54SMatthew G. Knepley 6373c73cfb54SMatthew G. Knepley Input Parameters: 6374bb7acecfSBarry Smith + dm - The `DM` 6375c73cfb54SMatthew G. Knepley - dim - The topological dimension 6376c73cfb54SMatthew G. Knepley 6377c73cfb54SMatthew G. Knepley Level: beginner 6378c73cfb54SMatthew G. Knepley 63791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDimension()`, `DMCreate()` 6380c73cfb54SMatthew G. Knepley @*/ 6381d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDimension(DM dm, PetscInt dim) 6382d71ae5a4SJacob Faibussowitsch { 6383e5e52638SMatthew G. Knepley PetscDS ds; 638445480ffeSMatthew G. Knepley PetscInt Nds, n; 6385f17e8794SMatthew G. Knepley 6386c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6387c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6388c73cfb54SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, dim, 2); 6389c73cfb54SMatthew G. Knepley dm->dim = dim; 6390d17bd122SMatthew G. Knepley if (dm->dim >= 0) { 63919566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 639245480ffeSMatthew G. Knepley for (n = 0; n < Nds; ++n) { 639307218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, n, NULL, NULL, &ds, NULL)); 63949566063dSJacob Faibussowitsch if (ds->dimEmbed < 0) PetscCall(PetscDSSetCoordinateDimension(ds, dim)); 639545480ffeSMatthew G. Knepley } 6396d17bd122SMatthew G. Knepley } 63973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6398c73cfb54SMatthew G. Knepley } 6399c73cfb54SMatthew G. Knepley 6400793f3fe5SMatthew G. Knepley /*@ 6401793f3fe5SMatthew G. Knepley DMGetDimPoints - Get the half-open interval for all points of a given dimension 6402793f3fe5SMatthew G. Knepley 640320f4b53cSBarry Smith Collective 6404793f3fe5SMatthew G. Knepley 6405793f3fe5SMatthew G. Knepley Input Parameters: 6406bb7acecfSBarry Smith + dm - the `DM` 6407793f3fe5SMatthew G. Knepley - dim - the dimension 6408793f3fe5SMatthew G. Knepley 6409793f3fe5SMatthew G. Knepley Output Parameters: 6410793f3fe5SMatthew G. Knepley + pStart - The first point of the given dimension 6411aa049354SPatrick Sanan - pEnd - The first point following points of the given dimension 6412793f3fe5SMatthew G. Knepley 641320f4b53cSBarry Smith Level: intermediate 641420f4b53cSBarry Smith 6415793f3fe5SMatthew G. Knepley Note: 6416793f3fe5SMatthew G. Knepley The points are vertices in the Hasse diagram encoding the topology. This is explained in 6417a8d69d7bSBarry Smith https://arxiv.org/abs/0908.4427. If no points exist of this dimension in the storage scheme, 6418793f3fe5SMatthew G. Knepley then the interval is empty. 6419793f3fe5SMatthew G. Knepley 64201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPLEX`, `DMPlexGetDepthStratum()`, `DMPlexGetHeightStratum()` 6421793f3fe5SMatthew G. Knepley @*/ 6422d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimPoints(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd) 6423d71ae5a4SJacob Faibussowitsch { 6424793f3fe5SMatthew G. Knepley PetscInt d; 6425793f3fe5SMatthew G. Knepley 6426793f3fe5SMatthew G. Knepley PetscFunctionBegin; 6427793f3fe5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64289566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &d)); 64297a8be351SBarry Smith PetscCheck((dim >= 0) && (dim <= d), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %" PetscInt_FMT, dim); 6430dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getdimpoints, dim, pStart, pEnd); 64313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6432793f3fe5SMatthew G. Knepley } 6433793f3fe5SMatthew G. Knepley 64346636e97aSMatthew G Knepley /*@ 6435bb7acecfSBarry Smith DMGetOutputDM - Retrieve the `DM` associated with the layout for output 6436f4d763aaSMatthew G. Knepley 643720f4b53cSBarry Smith Collective 64388f700142SStefano Zampini 6439f4d763aaSMatthew G. Knepley Input Parameter: 6440bb7acecfSBarry Smith . dm - The original `DM` 6441f4d763aaSMatthew G. Knepley 6442f4d763aaSMatthew G. Knepley Output Parameter: 6443bb7acecfSBarry Smith . odm - The `DM` which provides the layout for output 6444f4d763aaSMatthew G. Knepley 6445f4d763aaSMatthew G. Knepley Level: intermediate 6446f4d763aaSMatthew G. Knepley 6447bb7acecfSBarry Smith Note: 6448bb7acecfSBarry Smith In some situations the vector obtained with `DMCreateGlobalVector()` excludes points for degrees of freedom that are associated with fixed (Dirichelet) boundary 6449bb7acecfSBarry Smith conditions since the algebraic solver does not solve for those variables. The output `DM` includes these excluded points and its global vector contains the 6450bb7acecfSBarry Smith locations for those dof so that they can be output to a file or other viewer along with the unconstrained dof. 6451bb7acecfSBarry Smith 64521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`, `DMGetGlobalSection()`, `DMCreateGlobalVector()`, `PetscSectionHasConstraints()`, `DMSetGlobalSection()` 6453f4d763aaSMatthew G. Knepley @*/ 6454d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputDM(DM dm, DM *odm) 6455d71ae5a4SJacob Faibussowitsch { 6456c26acbdeSMatthew G. Knepley PetscSection section; 6457eb9d3e4dSMatthew G. Knepley IS perm; 6458eb9d3e4dSMatthew G. Knepley PetscBool hasConstraints, newDM, gnewDM; 645914f150ffSMatthew G. Knepley 646014f150ffSMatthew G. Knepley PetscFunctionBegin; 646114f150ffSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64624f572ea9SToby Isaac PetscAssertPointer(odm, 2); 64639566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 64649566063dSJacob Faibussowitsch PetscCall(PetscSectionHasConstraints(section, &hasConstraints)); 6465eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionGetPermutation(section, &perm)); 6466eb9d3e4dSMatthew G. Knepley newDM = hasConstraints || perm ? PETSC_TRUE : PETSC_FALSE; 6467eb9d3e4dSMatthew G. Knepley PetscCall(MPIU_Allreduce(&newDM, &gnewDM, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm))); 6468eb9d3e4dSMatthew G. Knepley if (!gnewDM) { 6469c26acbdeSMatthew G. Knepley *odm = dm; 64703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6471c26acbdeSMatthew G. Knepley } 647214f150ffSMatthew G. Knepley if (!dm->dmBC) { 6473c26acbdeSMatthew G. Knepley PetscSection newSection, gsection; 647414f150ffSMatthew G. Knepley PetscSF sf; 6475eb9d3e4dSMatthew G. Knepley PetscBool usePerm = dm->ignorePermOutput ? PETSC_FALSE : PETSC_TRUE; 647614f150ffSMatthew G. Knepley 64779566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->dmBC)); 64789566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, dm->dmBC)); 64799566063dSJacob Faibussowitsch PetscCall(PetscSectionClone(section, &newSection)); 64809566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm->dmBC, newSection)); 64819566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newSection)); 64829566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm->dmBC, &sf)); 6483eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionCreateGlobalSection(section, sf, usePerm, PETSC_TRUE, PETSC_FALSE, &gsection)); 64849566063dSJacob Faibussowitsch PetscCall(DMSetGlobalSection(dm->dmBC, gsection)); 64859566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&gsection)); 648614f150ffSMatthew G. Knepley } 648714f150ffSMatthew G. Knepley *odm = dm->dmBC; 64883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 648914f150ffSMatthew G. Knepley } 6490f4d763aaSMatthew G. Knepley 6491f4d763aaSMatthew G. Knepley /*@ 6492cdb7a50dSMatthew G. Knepley DMGetOutputSequenceNumber - Retrieve the sequence number/value for output 6493f4d763aaSMatthew G. Knepley 6494f4d763aaSMatthew G. Knepley Input Parameter: 6495bb7acecfSBarry Smith . dm - The original `DM` 6496f4d763aaSMatthew G. Knepley 6497cdb7a50dSMatthew G. Knepley Output Parameters: 6498cdb7a50dSMatthew G. Knepley + num - The output sequence number 6499cdb7a50dSMatthew G. Knepley - val - The output sequence value 6500f4d763aaSMatthew G. Knepley 6501f4d763aaSMatthew G. Knepley Level: intermediate 6502f4d763aaSMatthew G. Knepley 6503bb7acecfSBarry Smith Note: 6504bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6505bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6506bb7acecfSBarry Smith 650773ff1848SBarry Smith Developer Note: 6508bb7acecfSBarry Smith The `DM` serves as a convenient place to store the current iteration value. The iteration is not 6509bb7acecfSBarry Smith not directly related to the `DM`. 6510f4d763aaSMatthew G. Knepley 65111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()` 6512f4d763aaSMatthew G. Knepley @*/ 6513d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputSequenceNumber(DM dm, PetscInt *num, PetscReal *val) 6514d71ae5a4SJacob Faibussowitsch { 6515f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6516f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 65179371c9d4SSatish Balay if (num) { 65184f572ea9SToby Isaac PetscAssertPointer(num, 2); 65199371c9d4SSatish Balay *num = dm->outputSequenceNum; 65209371c9d4SSatish Balay } 65219371c9d4SSatish Balay if (val) { 65224f572ea9SToby Isaac PetscAssertPointer(val, 3); 65239371c9d4SSatish Balay *val = dm->outputSequenceVal; 65249371c9d4SSatish Balay } 65253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6526f4d763aaSMatthew G. Knepley } 6527f4d763aaSMatthew G. Knepley 6528f4d763aaSMatthew G. Knepley /*@ 6529cdb7a50dSMatthew G. Knepley DMSetOutputSequenceNumber - Set the sequence number/value for output 6530f4d763aaSMatthew G. Knepley 6531f4d763aaSMatthew G. Knepley Input Parameters: 6532bb7acecfSBarry Smith + dm - The original `DM` 6533cdb7a50dSMatthew G. Knepley . num - The output sequence number 6534cdb7a50dSMatthew G. Knepley - val - The output sequence value 6535f4d763aaSMatthew G. Knepley 6536f4d763aaSMatthew G. Knepley Level: intermediate 6537f4d763aaSMatthew G. Knepley 6538bb7acecfSBarry Smith Note: 6539bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6540bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6541f4d763aaSMatthew G. Knepley 65421cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()` 6543f4d763aaSMatthew G. Knepley @*/ 6544d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOutputSequenceNumber(DM dm, PetscInt num, PetscReal val) 6545d71ae5a4SJacob Faibussowitsch { 6546f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6547f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6548f4d763aaSMatthew G. Knepley dm->outputSequenceNum = num; 6549cdb7a50dSMatthew G. Knepley dm->outputSequenceVal = val; 65503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6551cdb7a50dSMatthew G. Knepley } 6552cdb7a50dSMatthew G. Knepley 65535d83a8b1SBarry Smith /*@ 6554bb7acecfSBarry Smith DMOutputSequenceLoad - Retrieve the sequence value from a `PetscViewer` 6555cdb7a50dSMatthew G. Knepley 6556cdb7a50dSMatthew G. Knepley Input Parameters: 6557bb7acecfSBarry Smith + dm - The original `DM` 6558b2033f5dSMatthew G. Knepley . viewer - The `PetscViewer` to get it from 6559cdb7a50dSMatthew G. Knepley . name - The sequence name 6560cdb7a50dSMatthew G. Knepley - num - The output sequence number 6561cdb7a50dSMatthew G. Knepley 6562cdb7a50dSMatthew G. Knepley Output Parameter: 6563cdb7a50dSMatthew G. Knepley . val - The output sequence value 6564cdb7a50dSMatthew G. Knepley 6565cdb7a50dSMatthew G. Knepley Level: intermediate 6566cdb7a50dSMatthew G. Knepley 6567bb7acecfSBarry Smith Note: 6568bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6569bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6570bb7acecfSBarry Smith 657173ff1848SBarry Smith Developer Note: 6572bb7acecfSBarry Smith It is unclear at the user API level why a `DM` is needed as input 6573cdb7a50dSMatthew G. Knepley 65741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()` 6575cdb7a50dSMatthew G. Knepley @*/ 6576b2033f5dSMatthew G. Knepley PetscErrorCode DMOutputSequenceLoad(DM dm, PetscViewer viewer, const char name[], PetscInt num, PetscReal *val) 6577d71ae5a4SJacob Faibussowitsch { 6578cdb7a50dSMatthew G. Knepley PetscBool ishdf5; 6579cdb7a50dSMatthew G. Knepley 6580cdb7a50dSMatthew G. Knepley PetscFunctionBegin; 6581cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6582cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 6583b2033f5dSMatthew G. Knepley PetscAssertPointer(name, 3); 65844f572ea9SToby Isaac PetscAssertPointer(val, 5); 65859566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 6586cdb7a50dSMatthew G. Knepley if (ishdf5) { 6587cdb7a50dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 6588cdb7a50dSMatthew G. Knepley PetscScalar value; 6589cdb7a50dSMatthew G. Knepley 65909566063dSJacob Faibussowitsch PetscCall(DMSequenceLoad_HDF5_Internal(dm, name, num, &value, viewer)); 65914aeb217fSMatthew G. Knepley *val = PetscRealPart(value); 6592cdb7a50dSMatthew G. Knepley #endif 6593cdb7a50dSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()"); 65943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6595f4d763aaSMatthew G. Knepley } 65968e4ac7eaSMatthew G. Knepley 65978e4ac7eaSMatthew G. Knepley /*@ 6598b2033f5dSMatthew G. Knepley DMGetOutputSequenceLength - Retrieve the number of sequence values from a `PetscViewer` 6599b2033f5dSMatthew G. Knepley 6600b2033f5dSMatthew G. Knepley Input Parameters: 6601b2033f5dSMatthew G. Knepley + dm - The original `DM` 6602b2033f5dSMatthew G. Knepley . viewer - The `PetscViewer` to get it from 6603b2033f5dSMatthew G. Knepley - name - The sequence name 6604b2033f5dSMatthew G. Knepley 6605b2033f5dSMatthew G. Knepley Output Parameter: 6606b2033f5dSMatthew G. Knepley . len - The length of the output sequence 6607b2033f5dSMatthew G. Knepley 6608b2033f5dSMatthew G. Knepley Level: intermediate 6609b2033f5dSMatthew G. Knepley 6610b2033f5dSMatthew G. Knepley Note: 6611b2033f5dSMatthew G. Knepley This is intended for output that should appear in sequence, for instance 6612b2033f5dSMatthew G. Knepley a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6613b2033f5dSMatthew G. Knepley 6614b2033f5dSMatthew G. Knepley Developer Note: 6615b2033f5dSMatthew G. Knepley It is unclear at the user API level why a `DM` is needed as input 6616b2033f5dSMatthew G. Knepley 6617b2033f5dSMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()` 6618b2033f5dSMatthew G. Knepley @*/ 6619b2033f5dSMatthew G. Knepley PetscErrorCode DMGetOutputSequenceLength(DM dm, PetscViewer viewer, const char name[], PetscInt *len) 6620b2033f5dSMatthew G. Knepley { 6621b2033f5dSMatthew G. Knepley PetscBool ishdf5; 6622b2033f5dSMatthew G. Knepley 6623b2033f5dSMatthew G. Knepley PetscFunctionBegin; 6624b2033f5dSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6625b2033f5dSMatthew G. Knepley PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 6626b2033f5dSMatthew G. Knepley PetscAssertPointer(name, 3); 6627b2033f5dSMatthew G. Knepley PetscAssertPointer(len, 4); 6628b2033f5dSMatthew G. Knepley PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 6629b2033f5dSMatthew G. Knepley if (ishdf5) { 6630b2033f5dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 6631b2033f5dSMatthew G. Knepley PetscCall(DMSequenceGetLength_HDF5_Internal(dm, name, len, viewer)); 6632b2033f5dSMatthew G. Knepley #endif 6633b2033f5dSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()"); 6634b2033f5dSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 6635b2033f5dSMatthew G. Knepley } 6636b2033f5dSMatthew G. Knepley 6637b2033f5dSMatthew G. Knepley /*@ 6638bb7acecfSBarry Smith DMGetUseNatural - Get the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 66398e4ac7eaSMatthew G. Knepley 664020f4b53cSBarry Smith Not Collective 66418e4ac7eaSMatthew G. Knepley 66428e4ac7eaSMatthew G. Knepley Input Parameter: 6643bb7acecfSBarry Smith . dm - The `DM` 66448e4ac7eaSMatthew G. Knepley 66458e4ac7eaSMatthew G. Knepley Output Parameter: 6646bb7acecfSBarry Smith . useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 66478e4ac7eaSMatthew G. Knepley 66488e4ac7eaSMatthew G. Knepley Level: beginner 66498e4ac7eaSMatthew G. Knepley 66501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetUseNatural()`, `DMCreate()` 66518e4ac7eaSMatthew G. Knepley @*/ 6652d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetUseNatural(DM dm, PetscBool *useNatural) 6653d71ae5a4SJacob Faibussowitsch { 66548e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 66558e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 66564f572ea9SToby Isaac PetscAssertPointer(useNatural, 2); 66578e4ac7eaSMatthew G. Knepley *useNatural = dm->useNatural; 66583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 66598e4ac7eaSMatthew G. Knepley } 66608e4ac7eaSMatthew G. Knepley 66618e4ac7eaSMatthew G. Knepley /*@ 6662bb7acecfSBarry Smith DMSetUseNatural - Set the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 66638e4ac7eaSMatthew G. Knepley 666420f4b53cSBarry Smith Collective 66658e4ac7eaSMatthew G. Knepley 66668e4ac7eaSMatthew G. Knepley Input Parameters: 6667bb7acecfSBarry Smith + dm - The `DM` 6668bb7acecfSBarry Smith - useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 66698e4ac7eaSMatthew G. Knepley 667073ff1848SBarry Smith Level: beginner 667173ff1848SBarry Smith 6672bb7acecfSBarry Smith Note: 6673bb7acecfSBarry Smith This also causes the map to be build after `DMCreateSubDM()` and `DMCreateSuperDM()` 66745d3b26e6SMatthew G. Knepley 66751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetUseNatural()`, `DMCreate()`, `DMPlexDistribute()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 66768e4ac7eaSMatthew G. Knepley @*/ 6677d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUseNatural(DM dm, PetscBool useNatural) 6678d71ae5a4SJacob Faibussowitsch { 66798e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 66808e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 66818833efb5SBlaise Bourdin PetscValidLogicalCollectiveBool(dm, useNatural, 2); 66828e4ac7eaSMatthew G. Knepley dm->useNatural = useNatural; 66833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 66848e4ac7eaSMatthew G. Knepley } 6685c58f1c22SToby Isaac 6686cc4c1da9SBarry Smith /*@ 6687bb7acecfSBarry Smith DMCreateLabel - Create a label of the given name if it does not already exist in the `DM` 6688c58f1c22SToby Isaac 6689c58f1c22SToby Isaac Not Collective 6690c58f1c22SToby Isaac 6691c58f1c22SToby Isaac Input Parameters: 6692bb7acecfSBarry Smith + dm - The `DM` object 6693c58f1c22SToby Isaac - name - The label name 6694c58f1c22SToby Isaac 6695c58f1c22SToby Isaac Level: intermediate 6696c58f1c22SToby Isaac 66971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6698c58f1c22SToby Isaac @*/ 6699d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabel(DM dm, const char name[]) 6700d71ae5a4SJacob Faibussowitsch { 67015d80c0bfSVaclav Hapla PetscBool flg; 67025d80c0bfSVaclav Hapla DMLabel label; 6703c58f1c22SToby Isaac 6704c58f1c22SToby Isaac PetscFunctionBegin; 6705c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67064f572ea9SToby Isaac PetscAssertPointer(name, 2); 67079566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 6708c58f1c22SToby Isaac if (!flg) { 67099566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 67109566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 67119566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 6712c58f1c22SToby Isaac } 67133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6714c58f1c22SToby Isaac } 6715c58f1c22SToby Isaac 6716cc4c1da9SBarry Smith /*@ 6717bb7acecfSBarry Smith DMCreateLabelAtIndex - Create a label of the given name at the given index. If it already exists in the `DM`, move it to this index. 67180fdc7489SMatthew Knepley 67190fdc7489SMatthew Knepley Not Collective 67200fdc7489SMatthew Knepley 67210fdc7489SMatthew Knepley Input Parameters: 6722bb7acecfSBarry Smith + dm - The `DM` object 67230fdc7489SMatthew Knepley . l - The index for the label 67240fdc7489SMatthew Knepley - name - The label name 67250fdc7489SMatthew Knepley 67260fdc7489SMatthew Knepley Level: intermediate 67270fdc7489SMatthew Knepley 67281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateLabel()`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 67290fdc7489SMatthew Knepley @*/ 6730d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabelAtIndex(DM dm, PetscInt l, const char name[]) 6731d71ae5a4SJacob Faibussowitsch { 67320fdc7489SMatthew Knepley DMLabelLink orig, prev = NULL; 67330fdc7489SMatthew Knepley DMLabel label; 67340fdc7489SMatthew Knepley PetscInt Nl, m; 67350fdc7489SMatthew Knepley PetscBool flg, match; 67360fdc7489SMatthew Knepley const char *lname; 67370fdc7489SMatthew Knepley 67380fdc7489SMatthew Knepley PetscFunctionBegin; 67390fdc7489SMatthew Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67404f572ea9SToby Isaac PetscAssertPointer(name, 3); 67419566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 67420fdc7489SMatthew Knepley if (!flg) { 67439566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 67449566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 67459566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 67460fdc7489SMatthew Knepley } 67479566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 674863a3b9bcSJacob Faibussowitsch PetscCheck(l < Nl, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label index %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", l, Nl); 67490fdc7489SMatthew Knepley for (m = 0, orig = dm->labels; m < Nl; ++m, prev = orig, orig = orig->next) { 67509566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)orig->label, &lname)); 67519566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &match)); 67520fdc7489SMatthew Knepley if (match) break; 67530fdc7489SMatthew Knepley } 67543ba16761SJacob Faibussowitsch if (m == l) PetscFunctionReturn(PETSC_SUCCESS); 67550fdc7489SMatthew Knepley if (!m) dm->labels = orig->next; 67560fdc7489SMatthew Knepley else prev->next = orig->next; 67570fdc7489SMatthew Knepley if (!l) { 67580fdc7489SMatthew Knepley orig->next = dm->labels; 67590fdc7489SMatthew Knepley dm->labels = orig; 67600fdc7489SMatthew Knepley } else { 6761fbccb6d4SPierre Jolivet for (m = 0, prev = dm->labels; m < l - 1; ++m, prev = prev->next); 67620fdc7489SMatthew Knepley orig->next = prev->next; 67630fdc7489SMatthew Knepley prev->next = orig; 67640fdc7489SMatthew Knepley } 67653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 67660fdc7489SMatthew Knepley } 67670fdc7489SMatthew Knepley 6768cc4c1da9SBarry Smith /*@ 6769bb7acecfSBarry Smith DMGetLabelValue - Get the value in a `DMLabel` for the given point, with -1 as the default 6770c58f1c22SToby Isaac 6771c58f1c22SToby Isaac Not Collective 6772c58f1c22SToby Isaac 6773c58f1c22SToby Isaac Input Parameters: 6774bb7acecfSBarry Smith + dm - The `DM` object 6775c58f1c22SToby Isaac . name - The label name 6776c58f1c22SToby Isaac - point - The mesh point 6777c58f1c22SToby Isaac 6778c58f1c22SToby Isaac Output Parameter: 6779c58f1c22SToby Isaac . value - The label value for this point, or -1 if the point is not in the label 6780c58f1c22SToby Isaac 6781c58f1c22SToby Isaac Level: beginner 6782c58f1c22SToby Isaac 67831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6784c58f1c22SToby Isaac @*/ 6785d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelValue(DM dm, const char name[], PetscInt point, PetscInt *value) 6786d71ae5a4SJacob Faibussowitsch { 6787c58f1c22SToby Isaac DMLabel label; 6788c58f1c22SToby Isaac 6789c58f1c22SToby Isaac PetscFunctionBegin; 6790c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67914f572ea9SToby Isaac PetscAssertPointer(name, 2); 67929566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 67937a8be351SBarry Smith PetscCheck(label, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No label named %s was found", name); 67949566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, value)); 67953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6796c58f1c22SToby Isaac } 6797c58f1c22SToby Isaac 6798cc4c1da9SBarry Smith /*@ 6799bb7acecfSBarry Smith DMSetLabelValue - Add a point to a `DMLabel` with given value 6800c58f1c22SToby Isaac 6801c58f1c22SToby Isaac Not Collective 6802c58f1c22SToby Isaac 6803c58f1c22SToby Isaac Input Parameters: 6804bb7acecfSBarry Smith + dm - The `DM` object 6805c58f1c22SToby Isaac . name - The label name 6806c58f1c22SToby Isaac . point - The mesh point 6807c58f1c22SToby Isaac - value - The label value for this point 6808c58f1c22SToby Isaac 6809c58f1c22SToby Isaac Output Parameter: 6810c58f1c22SToby Isaac 6811c58f1c22SToby Isaac Level: beginner 6812c58f1c22SToby Isaac 68131cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelSetValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 6814c58f1c22SToby Isaac @*/ 6815d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6816d71ae5a4SJacob Faibussowitsch { 6817c58f1c22SToby Isaac DMLabel label; 6818c58f1c22SToby Isaac 6819c58f1c22SToby Isaac PetscFunctionBegin; 6820c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68214f572ea9SToby Isaac PetscAssertPointer(name, 2); 68229566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6823c58f1c22SToby Isaac if (!label) { 68249566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 68259566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6826c58f1c22SToby Isaac } 68279566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, value)); 68283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6829c58f1c22SToby Isaac } 6830c58f1c22SToby Isaac 6831cc4c1da9SBarry Smith /*@ 6832bb7acecfSBarry Smith DMClearLabelValue - Remove a point from a `DMLabel` with given value 6833c58f1c22SToby Isaac 6834c58f1c22SToby Isaac Not Collective 6835c58f1c22SToby Isaac 6836c58f1c22SToby Isaac Input Parameters: 6837bb7acecfSBarry Smith + dm - The `DM` object 6838c58f1c22SToby Isaac . name - The label name 6839c58f1c22SToby Isaac . point - The mesh point 6840c58f1c22SToby Isaac - value - The label value for this point 6841c58f1c22SToby Isaac 6842c58f1c22SToby Isaac Level: beginner 6843c58f1c22SToby Isaac 68441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelClearValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6845c58f1c22SToby Isaac @*/ 6846d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6847d71ae5a4SJacob Faibussowitsch { 6848c58f1c22SToby Isaac DMLabel label; 6849c58f1c22SToby Isaac 6850c58f1c22SToby Isaac PetscFunctionBegin; 6851c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68524f572ea9SToby Isaac PetscAssertPointer(name, 2); 68539566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 68543ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 68559566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, value)); 68563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6857c58f1c22SToby Isaac } 6858c58f1c22SToby Isaac 6859cc4c1da9SBarry Smith /*@ 6860bb7acecfSBarry Smith DMGetLabelSize - Get the value of `DMLabelGetNumValues()` of a `DMLabel` in the `DM` 6861c58f1c22SToby Isaac 6862c58f1c22SToby Isaac Not Collective 6863c58f1c22SToby Isaac 6864c58f1c22SToby Isaac Input Parameters: 6865bb7acecfSBarry Smith + dm - The `DM` object 6866c58f1c22SToby Isaac - name - The label name 6867c58f1c22SToby Isaac 6868c58f1c22SToby Isaac Output Parameter: 6869c58f1c22SToby Isaac . size - The number of different integer ids, or 0 if the label does not exist 6870c58f1c22SToby Isaac 6871c58f1c22SToby Isaac Level: beginner 6872c58f1c22SToby Isaac 687373ff1848SBarry Smith Developer Note: 6874bb7acecfSBarry Smith This should be renamed to something like `DMGetLabelNumValues()` or removed. 6875bb7acecfSBarry Smith 68761cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetNumValues()`, `DMSetLabelValue()`, `DMGetLabel()` 6877c58f1c22SToby Isaac @*/ 6878d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelSize(DM dm, const char name[], PetscInt *size) 6879d71ae5a4SJacob Faibussowitsch { 6880c58f1c22SToby Isaac DMLabel label; 6881c58f1c22SToby Isaac 6882c58f1c22SToby Isaac PetscFunctionBegin; 6883c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68844f572ea9SToby Isaac PetscAssertPointer(name, 2); 68854f572ea9SToby Isaac PetscAssertPointer(size, 3); 68869566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6887c58f1c22SToby Isaac *size = 0; 68883ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 68899566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, size)); 68903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6891c58f1c22SToby Isaac } 6892c58f1c22SToby Isaac 6893cc4c1da9SBarry Smith /*@ 6894bb7acecfSBarry Smith DMGetLabelIdIS - Get the `DMLabelGetValueIS()` from a `DMLabel` in the `DM` 6895c58f1c22SToby Isaac 6896c58f1c22SToby Isaac Not Collective 6897c58f1c22SToby Isaac 6898c58f1c22SToby Isaac Input Parameters: 689960225df5SJacob Faibussowitsch + dm - The `DM` object 6900c58f1c22SToby Isaac - name - The label name 6901c58f1c22SToby Isaac 6902c58f1c22SToby Isaac Output Parameter: 690320f4b53cSBarry Smith . ids - The integer ids, or `NULL` if the label does not exist 6904c58f1c22SToby Isaac 6905c58f1c22SToby Isaac Level: beginner 6906c58f1c22SToby Isaac 69071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValueIS()`, `DMGetLabelSize()` 6908c58f1c22SToby Isaac @*/ 6909d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelIdIS(DM dm, const char name[], IS *ids) 6910d71ae5a4SJacob Faibussowitsch { 6911c58f1c22SToby Isaac DMLabel label; 6912c58f1c22SToby Isaac 6913c58f1c22SToby Isaac PetscFunctionBegin; 6914c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69154f572ea9SToby Isaac PetscAssertPointer(name, 2); 69164f572ea9SToby Isaac PetscAssertPointer(ids, 3); 69179566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6918c58f1c22SToby Isaac *ids = NULL; 6919dab2e251SBlaise Bourdin if (label) { 69209566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, ids)); 6921dab2e251SBlaise Bourdin } else { 6922dab2e251SBlaise Bourdin /* returning an empty IS */ 69239566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_USE_POINTER, ids)); 6924dab2e251SBlaise Bourdin } 69253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6926c58f1c22SToby Isaac } 6927c58f1c22SToby Isaac 6928cc4c1da9SBarry Smith /*@ 6929c58f1c22SToby Isaac DMGetStratumSize - Get the number of points in a label stratum 6930c58f1c22SToby Isaac 6931c58f1c22SToby Isaac Not Collective 6932c58f1c22SToby Isaac 6933c58f1c22SToby Isaac Input Parameters: 6934bb7acecfSBarry Smith + dm - The `DM` object 6935b6971eaeSBarry Smith . name - The label name of the stratum 6936c58f1c22SToby Isaac - value - The stratum value 6937c58f1c22SToby Isaac 6938c58f1c22SToby Isaac Output Parameter: 6939bb7acecfSBarry Smith . size - The number of points, also called the stratum size 6940c58f1c22SToby Isaac 6941c58f1c22SToby Isaac Level: beginner 6942c58f1c22SToby Isaac 69431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumSize()`, `DMGetLabelSize()`, `DMGetLabelIds()` 6944c58f1c22SToby Isaac @*/ 6945d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumSize(DM dm, const char name[], PetscInt value, PetscInt *size) 6946d71ae5a4SJacob Faibussowitsch { 6947c58f1c22SToby Isaac DMLabel label; 6948c58f1c22SToby Isaac 6949c58f1c22SToby Isaac PetscFunctionBegin; 6950c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69514f572ea9SToby Isaac PetscAssertPointer(name, 2); 69524f572ea9SToby Isaac PetscAssertPointer(size, 4); 69539566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6954c58f1c22SToby Isaac *size = 0; 69553ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69569566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, value, size)); 69573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6958c58f1c22SToby Isaac } 6959c58f1c22SToby Isaac 6960cc4c1da9SBarry Smith /*@ 6961c58f1c22SToby Isaac DMGetStratumIS - Get the points in a label stratum 6962c58f1c22SToby Isaac 6963c58f1c22SToby Isaac Not Collective 6964c58f1c22SToby Isaac 6965c58f1c22SToby Isaac Input Parameters: 6966bb7acecfSBarry Smith + dm - The `DM` object 6967c58f1c22SToby Isaac . name - The label name 6968c58f1c22SToby Isaac - value - The stratum value 6969c58f1c22SToby Isaac 6970c58f1c22SToby Isaac Output Parameter: 697120f4b53cSBarry Smith . points - The stratum points, or `NULL` if the label does not exist or does not have that value 6972c58f1c22SToby Isaac 6973c58f1c22SToby Isaac Level: beginner 6974c58f1c22SToby Isaac 69751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumIS()`, `DMGetStratumSize()` 6976c58f1c22SToby Isaac @*/ 6977d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumIS(DM dm, const char name[], PetscInt value, IS *points) 6978d71ae5a4SJacob Faibussowitsch { 6979c58f1c22SToby Isaac DMLabel label; 6980c58f1c22SToby Isaac 6981c58f1c22SToby Isaac PetscFunctionBegin; 6982c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69834f572ea9SToby Isaac PetscAssertPointer(name, 2); 69844f572ea9SToby Isaac PetscAssertPointer(points, 4); 69859566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6986c58f1c22SToby Isaac *points = NULL; 69873ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69889566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, value, points)); 69893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6990c58f1c22SToby Isaac } 6991c58f1c22SToby Isaac 6992cc4c1da9SBarry Smith /*@ 69939044fa66SMatthew G. Knepley DMSetStratumIS - Set the points in a label stratum 69944de306b1SToby Isaac 69954de306b1SToby Isaac Not Collective 69964de306b1SToby Isaac 69974de306b1SToby Isaac Input Parameters: 6998bb7acecfSBarry Smith + dm - The `DM` object 69994de306b1SToby Isaac . name - The label name 70004de306b1SToby Isaac . value - The stratum value 70014de306b1SToby Isaac - points - The stratum points 70024de306b1SToby Isaac 70034de306b1SToby Isaac Level: beginner 70044de306b1SToby Isaac 70051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMClearLabelStratum()`, `DMLabelClearStratum()`, `DMLabelSetStratumIS()`, `DMGetStratumSize()` 70064de306b1SToby Isaac @*/ 7007d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetStratumIS(DM dm, const char name[], PetscInt value, IS points) 7008d71ae5a4SJacob Faibussowitsch { 70094de306b1SToby Isaac DMLabel label; 70104de306b1SToby Isaac 70114de306b1SToby Isaac PetscFunctionBegin; 70124de306b1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70134f572ea9SToby Isaac PetscAssertPointer(name, 2); 7014292bffcbSToby Isaac PetscValidHeaderSpecific(points, IS_CLASSID, 4); 70159566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 70163ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 70179566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(label, value, points)); 70183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70194de306b1SToby Isaac } 70204de306b1SToby Isaac 7021cc4c1da9SBarry Smith /*@ 7022bb7acecfSBarry Smith DMClearLabelStratum - Remove all points from a stratum from a `DMLabel` 7023c58f1c22SToby Isaac 7024c58f1c22SToby Isaac Not Collective 7025c58f1c22SToby Isaac 7026c58f1c22SToby Isaac Input Parameters: 7027bb7acecfSBarry Smith + dm - The `DM` object 7028c58f1c22SToby Isaac . name - The label name 7029c58f1c22SToby Isaac - value - The label value for this point 7030c58f1c22SToby Isaac 7031c58f1c22SToby Isaac Output Parameter: 7032c58f1c22SToby Isaac 7033c58f1c22SToby Isaac Level: beginner 7034c58f1c22SToby Isaac 70351cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMLabelClearStratum()`, `DMSetLabelValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 7036c58f1c22SToby Isaac @*/ 7037d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelStratum(DM dm, const char name[], PetscInt value) 7038d71ae5a4SJacob Faibussowitsch { 7039c58f1c22SToby Isaac DMLabel label; 7040c58f1c22SToby Isaac 7041c58f1c22SToby Isaac PetscFunctionBegin; 7042c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70434f572ea9SToby Isaac PetscAssertPointer(name, 2); 70449566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 70453ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 70469566063dSJacob Faibussowitsch PetscCall(DMLabelClearStratum(label, value)); 70473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7048c58f1c22SToby Isaac } 7049c58f1c22SToby Isaac 7050c58f1c22SToby Isaac /*@ 7051bb7acecfSBarry Smith DMGetNumLabels - Return the number of labels defined by on the `DM` 7052c58f1c22SToby Isaac 7053c58f1c22SToby Isaac Not Collective 7054c58f1c22SToby Isaac 7055c58f1c22SToby Isaac Input Parameter: 7056bb7acecfSBarry Smith . dm - The `DM` object 7057c58f1c22SToby Isaac 7058c58f1c22SToby Isaac Output Parameter: 7059c58f1c22SToby Isaac . numLabels - the number of Labels 7060c58f1c22SToby Isaac 7061c58f1c22SToby Isaac Level: intermediate 7062c58f1c22SToby Isaac 70631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabelName()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7064c58f1c22SToby Isaac @*/ 7065d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumLabels(DM dm, PetscInt *numLabels) 7066d71ae5a4SJacob Faibussowitsch { 70675d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7068c58f1c22SToby Isaac PetscInt n = 0; 7069c58f1c22SToby Isaac 7070c58f1c22SToby Isaac PetscFunctionBegin; 7071c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70724f572ea9SToby Isaac PetscAssertPointer(numLabels, 2); 70739371c9d4SSatish Balay while (next) { 70749371c9d4SSatish Balay ++n; 70759371c9d4SSatish Balay next = next->next; 70769371c9d4SSatish Balay } 7077c58f1c22SToby Isaac *numLabels = n; 70783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7079c58f1c22SToby Isaac } 7080c58f1c22SToby Isaac 7081cc4c1da9SBarry Smith /*@ 7082c58f1c22SToby Isaac DMGetLabelName - Return the name of nth label 7083c58f1c22SToby Isaac 7084c58f1c22SToby Isaac Not Collective 7085c58f1c22SToby Isaac 7086c58f1c22SToby Isaac Input Parameters: 7087bb7acecfSBarry Smith + dm - The `DM` object 7088c58f1c22SToby Isaac - n - the label number 7089c58f1c22SToby Isaac 7090c58f1c22SToby Isaac Output Parameter: 7091c58f1c22SToby Isaac . name - the label name 7092c58f1c22SToby Isaac 7093c58f1c22SToby Isaac Level: intermediate 7094c58f1c22SToby Isaac 709573ff1848SBarry Smith Developer Note: 7096bb7acecfSBarry Smith Some of the functions that appropriate on labels using their number have the suffix ByNum, others do not. 7097bb7acecfSBarry Smith 70981cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7099c58f1c22SToby Isaac @*/ 7100cc4c1da9SBarry Smith PetscErrorCode DMGetLabelName(DM dm, PetscInt n, const char *name[]) 7101d71ae5a4SJacob Faibussowitsch { 71025d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7103c58f1c22SToby Isaac PetscInt l = 0; 7104c58f1c22SToby Isaac 7105c58f1c22SToby Isaac PetscFunctionBegin; 7106c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71074f572ea9SToby Isaac PetscAssertPointer(name, 3); 7108c58f1c22SToby Isaac while (next) { 7109c58f1c22SToby Isaac if (l == n) { 71109566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, name)); 71113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7112c58f1c22SToby Isaac } 7113c58f1c22SToby Isaac ++l; 7114c58f1c22SToby Isaac next = next->next; 7115c58f1c22SToby Isaac } 711663a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 7117c58f1c22SToby Isaac } 7118c58f1c22SToby Isaac 7119cc4c1da9SBarry Smith /*@ 7120bb7acecfSBarry Smith DMHasLabel - Determine whether the `DM` has a label of a given name 7121c58f1c22SToby Isaac 7122c58f1c22SToby Isaac Not Collective 7123c58f1c22SToby Isaac 7124c58f1c22SToby Isaac Input Parameters: 7125bb7acecfSBarry Smith + dm - The `DM` object 7126c58f1c22SToby Isaac - name - The label name 7127c58f1c22SToby Isaac 7128c58f1c22SToby Isaac Output Parameter: 7129bb7acecfSBarry Smith . hasLabel - `PETSC_TRUE` if the label is present 7130c58f1c22SToby Isaac 7131c58f1c22SToby Isaac Level: intermediate 7132c58f1c22SToby Isaac 71331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabel()`, `DMGetLabelByNum()`, `DMCreateLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7134c58f1c22SToby Isaac @*/ 7135d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasLabel(DM dm, const char name[], PetscBool *hasLabel) 7136d71ae5a4SJacob Faibussowitsch { 71375d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7138d67d17b1SMatthew G. Knepley const char *lname; 7139c58f1c22SToby Isaac 7140c58f1c22SToby Isaac PetscFunctionBegin; 7141c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71424f572ea9SToby Isaac PetscAssertPointer(name, 2); 71434f572ea9SToby Isaac PetscAssertPointer(hasLabel, 3); 7144c58f1c22SToby Isaac *hasLabel = PETSC_FALSE; 7145c58f1c22SToby Isaac while (next) { 71469566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 71479566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, hasLabel)); 7148c58f1c22SToby Isaac if (*hasLabel) break; 7149c58f1c22SToby Isaac next = next->next; 7150c58f1c22SToby Isaac } 71513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7152c58f1c22SToby Isaac } 7153c58f1c22SToby Isaac 7154a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown 7155cc4c1da9SBarry Smith /*@ 715620f4b53cSBarry Smith DMGetLabel - Return the label of a given name, or `NULL`, from a `DM` 7157c58f1c22SToby Isaac 7158c58f1c22SToby Isaac Not Collective 7159c58f1c22SToby Isaac 7160c58f1c22SToby Isaac Input Parameters: 7161bb7acecfSBarry Smith + dm - The `DM` object 7162c58f1c22SToby Isaac - name - The label name 7163c58f1c22SToby Isaac 7164c58f1c22SToby Isaac Output Parameter: 716520f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent 7166c58f1c22SToby Isaac 7167bb7acecfSBarry Smith Default labels in a `DMPLEX`: 7168bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 7169bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 7170bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 7171bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 7172bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 7173bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 71746d7c9049SMatthew G. Knepley 7175c58f1c22SToby Isaac Level: intermediate 7176c58f1c22SToby Isaac 717760225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMHasLabel()`, `DMGetLabelByNum()`, `DMAddLabel()`, `DMCreateLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 7178c58f1c22SToby Isaac @*/ 7179d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabel(DM dm, const char name[], DMLabel *label) 7180d71ae5a4SJacob Faibussowitsch { 71815d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7182c58f1c22SToby Isaac PetscBool hasLabel; 7183d67d17b1SMatthew G. Knepley const char *lname; 7184c58f1c22SToby Isaac 7185c58f1c22SToby Isaac PetscFunctionBegin; 7186c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71874f572ea9SToby Isaac PetscAssertPointer(name, 2); 71884f572ea9SToby Isaac PetscAssertPointer(label, 3); 7189c58f1c22SToby Isaac *label = NULL; 7190c58f1c22SToby Isaac while (next) { 71919566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 71929566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 7193c58f1c22SToby Isaac if (hasLabel) { 7194c58f1c22SToby Isaac *label = next->label; 7195c58f1c22SToby Isaac break; 7196c58f1c22SToby Isaac } 7197c58f1c22SToby Isaac next = next->next; 7198c58f1c22SToby Isaac } 71993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7200c58f1c22SToby Isaac } 7201c58f1c22SToby Isaac 7202cc4c1da9SBarry Smith /*@ 7203bb7acecfSBarry Smith DMGetLabelByNum - Return the nth label on a `DM` 7204c58f1c22SToby Isaac 7205c58f1c22SToby Isaac Not Collective 7206c58f1c22SToby Isaac 7207c58f1c22SToby Isaac Input Parameters: 7208bb7acecfSBarry Smith + dm - The `DM` object 7209c58f1c22SToby Isaac - n - the label number 7210c58f1c22SToby Isaac 7211c58f1c22SToby Isaac Output Parameter: 7212c58f1c22SToby Isaac . label - the label 7213c58f1c22SToby Isaac 7214c58f1c22SToby Isaac Level: intermediate 7215c58f1c22SToby Isaac 72161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7217c58f1c22SToby Isaac @*/ 7218d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelByNum(DM dm, PetscInt n, DMLabel *label) 7219d71ae5a4SJacob Faibussowitsch { 72205d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7221c58f1c22SToby Isaac PetscInt l = 0; 7222c58f1c22SToby Isaac 7223c58f1c22SToby Isaac PetscFunctionBegin; 7224c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72254f572ea9SToby Isaac PetscAssertPointer(label, 3); 7226c58f1c22SToby Isaac while (next) { 7227c58f1c22SToby Isaac if (l == n) { 7228c58f1c22SToby Isaac *label = next->label; 72293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7230c58f1c22SToby Isaac } 7231c58f1c22SToby Isaac ++l; 7232c58f1c22SToby Isaac next = next->next; 7233c58f1c22SToby Isaac } 723463a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 7235c58f1c22SToby Isaac } 7236c58f1c22SToby Isaac 7237cc4c1da9SBarry Smith /*@ 7238bb7acecfSBarry Smith DMAddLabel - Add the label to this `DM` 7239c58f1c22SToby Isaac 7240c58f1c22SToby Isaac Not Collective 7241c58f1c22SToby Isaac 7242c58f1c22SToby Isaac Input Parameters: 7243bb7acecfSBarry Smith + dm - The `DM` object 7244bb7acecfSBarry Smith - label - The `DMLabel` 7245c58f1c22SToby Isaac 7246c58f1c22SToby Isaac Level: developer 7247c58f1c22SToby Isaac 724860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7249c58f1c22SToby Isaac @*/ 7250d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddLabel(DM dm, DMLabel label) 7251d71ae5a4SJacob Faibussowitsch { 72525d80c0bfSVaclav Hapla DMLabelLink l, *p, tmpLabel; 7253c58f1c22SToby Isaac PetscBool hasLabel; 7254d67d17b1SMatthew G. Knepley const char *lname; 72555d80c0bfSVaclav Hapla PetscBool flg; 7256c58f1c22SToby Isaac 7257c58f1c22SToby Isaac PetscFunctionBegin; 7258c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72599566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &lname)); 72609566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, lname, &hasLabel)); 72617a8be351SBarry Smith PetscCheck(!hasLabel, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in this DM", lname); 72629566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(1, &tmpLabel)); 7263c58f1c22SToby Isaac tmpLabel->label = label; 7264c58f1c22SToby Isaac tmpLabel->output = PETSC_TRUE; 72655d80c0bfSVaclav Hapla for (p = &dm->labels; (l = *p); p = &l->next) { } 72665d80c0bfSVaclav Hapla *p = tmpLabel; 72679566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 72689566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 72695d80c0bfSVaclav Hapla if (flg) dm->depthLabel = label; 72709566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 7271ba2698f1SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 72723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7273c58f1c22SToby Isaac } 7274c58f1c22SToby Isaac 7275a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown 7276cc4c1da9SBarry Smith /*@ 72774a7ee7d0SMatthew G. Knepley DMSetLabel - Replaces the label of a given name, or ignores it if the name is not present 72784a7ee7d0SMatthew G. Knepley 72794a7ee7d0SMatthew G. Knepley Not Collective 72804a7ee7d0SMatthew G. Knepley 72814a7ee7d0SMatthew G. Knepley Input Parameters: 7282bb7acecfSBarry Smith + dm - The `DM` object 7283bb7acecfSBarry Smith - label - The `DMLabel`, having the same name, to substitute 72844a7ee7d0SMatthew G. Knepley 7285bb7acecfSBarry Smith Default labels in a `DMPLEX`: 7286bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 7287bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 7288bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 7289bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 7290bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 7291bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 72924a7ee7d0SMatthew G. Knepley 72934a7ee7d0SMatthew G. Knepley Level: intermediate 72944a7ee7d0SMatthew G. Knepley 72951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 72964a7ee7d0SMatthew G. Knepley @*/ 7297d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabel(DM dm, DMLabel label) 7298d71ae5a4SJacob Faibussowitsch { 72994a7ee7d0SMatthew G. Knepley DMLabelLink next = dm->labels; 73004a7ee7d0SMatthew G. Knepley PetscBool hasLabel, flg; 73014a7ee7d0SMatthew G. Knepley const char *name, *lname; 73024a7ee7d0SMatthew G. Knepley 73034a7ee7d0SMatthew G. Knepley PetscFunctionBegin; 73044a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73054a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 73069566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 73074a7ee7d0SMatthew G. Knepley while (next) { 73089566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 73099566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 73104a7ee7d0SMatthew G. Knepley if (hasLabel) { 73119566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 73129566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 73134a7ee7d0SMatthew G. Knepley if (flg) dm->depthLabel = label; 73149566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 73154a7ee7d0SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 73169566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 73174a7ee7d0SMatthew G. Knepley next->label = label; 73184a7ee7d0SMatthew G. Knepley break; 73194a7ee7d0SMatthew G. Knepley } 73204a7ee7d0SMatthew G. Knepley next = next->next; 73214a7ee7d0SMatthew G. Knepley } 73223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 73234a7ee7d0SMatthew G. Knepley } 73244a7ee7d0SMatthew G. Knepley 7325cc4c1da9SBarry Smith /*@ 7326bb7acecfSBarry Smith DMRemoveLabel - Remove the label given by name from this `DM` 7327c58f1c22SToby Isaac 7328c58f1c22SToby Isaac Not Collective 7329c58f1c22SToby Isaac 7330c58f1c22SToby Isaac Input Parameters: 7331bb7acecfSBarry Smith + dm - The `DM` object 7332c58f1c22SToby Isaac - name - The label name 7333c58f1c22SToby Isaac 7334c58f1c22SToby Isaac Output Parameter: 733520f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent. Pass in `NULL` to call `DMLabelDestroy()` on the label, otherwise the 7336bb7acecfSBarry Smith caller is responsible for calling `DMLabelDestroy()`. 7337c58f1c22SToby Isaac 7338c58f1c22SToby Isaac Level: developer 7339c58f1c22SToby Isaac 73401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabelBySelf()` 7341c58f1c22SToby Isaac @*/ 7342d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabel(DM dm, const char name[], DMLabel *label) 7343d71ae5a4SJacob Faibussowitsch { 734495d578d6SVaclav Hapla DMLabelLink link, *pnext; 7345c58f1c22SToby Isaac PetscBool hasLabel; 7346d67d17b1SMatthew G. Knepley const char *lname; 7347c58f1c22SToby Isaac 7348c58f1c22SToby Isaac PetscFunctionBegin; 7349c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73504f572ea9SToby Isaac PetscAssertPointer(name, 2); 7351e5472504SVaclav Hapla if (label) { 73524f572ea9SToby Isaac PetscAssertPointer(label, 3); 7353c58f1c22SToby Isaac *label = NULL; 7354e5472504SVaclav Hapla } 73555d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 73569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)link->label, &lname)); 73579566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 7358c58f1c22SToby Isaac if (hasLabel) { 735995d578d6SVaclav Hapla *pnext = link->next; /* Remove from list */ 73609566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &hasLabel)); 736195d578d6SVaclav Hapla if (hasLabel) dm->depthLabel = NULL; 73629566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &hasLabel)); 7363ba2698f1SMatthew G. Knepley if (hasLabel) dm->celltypeLabel = NULL; 736495d578d6SVaclav Hapla if (label) *label = link->label; 73659566063dSJacob Faibussowitsch else PetscCall(DMLabelDestroy(&link->label)); 73669566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7367c58f1c22SToby Isaac break; 7368c58f1c22SToby Isaac } 7369c58f1c22SToby Isaac } 73703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7371c58f1c22SToby Isaac } 7372c58f1c22SToby Isaac 7373306894acSVaclav Hapla /*@ 7374bb7acecfSBarry Smith DMRemoveLabelBySelf - Remove the label from this `DM` 7375306894acSVaclav Hapla 7376306894acSVaclav Hapla Not Collective 7377306894acSVaclav Hapla 7378306894acSVaclav Hapla Input Parameters: 7379bb7acecfSBarry Smith + dm - The `DM` object 7380bb7acecfSBarry Smith . label - The `DMLabel` to be removed from the `DM` 738120f4b53cSBarry Smith - failNotFound - Should it fail if the label is not found in the `DM`? 7382306894acSVaclav Hapla 7383306894acSVaclav Hapla Level: developer 7384306894acSVaclav Hapla 7385bb7acecfSBarry Smith Note: 7386306894acSVaclav Hapla Only exactly the same instance is removed if found, name match is ignored. 7387bb7acecfSBarry Smith If the `DM` has an exclusive reference to the label, the label gets destroyed and 7388306894acSVaclav Hapla *label nullified. 7389306894acSVaclav Hapla 73901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()` `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabel()` 7391306894acSVaclav Hapla @*/ 7392d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabelBySelf(DM dm, DMLabel *label, PetscBool failNotFound) 7393d71ae5a4SJacob Faibussowitsch { 739443e45a93SVaclav Hapla DMLabelLink link, *pnext; 7395306894acSVaclav Hapla PetscBool hasLabel = PETSC_FALSE; 7396306894acSVaclav Hapla 7397306894acSVaclav Hapla PetscFunctionBegin; 7398306894acSVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73994f572ea9SToby Isaac PetscAssertPointer(label, 2); 74003ba16761SJacob Faibussowitsch if (!*label && !failNotFound) PetscFunctionReturn(PETSC_SUCCESS); 7401306894acSVaclav Hapla PetscValidHeaderSpecific(*label, DMLABEL_CLASSID, 2); 7402306894acSVaclav Hapla PetscValidLogicalCollectiveBool(dm, failNotFound, 3); 74035d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 740443e45a93SVaclav Hapla if (*label == link->label) { 7405306894acSVaclav Hapla hasLabel = PETSC_TRUE; 740643e45a93SVaclav Hapla *pnext = link->next; /* Remove from list */ 7407306894acSVaclav Hapla if (*label == dm->depthLabel) dm->depthLabel = NULL; 7408ba2698f1SMatthew G. Knepley if (*label == dm->celltypeLabel) dm->celltypeLabel = NULL; 740943e45a93SVaclav Hapla if (((PetscObject)link->label)->refct < 2) *label = NULL; /* nullify if exclusive reference */ 74109566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&link->label)); 74119566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7412306894acSVaclav Hapla break; 7413306894acSVaclav Hapla } 7414306894acSVaclav Hapla } 74157a8be351SBarry Smith PetscCheck(hasLabel || !failNotFound, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Given label not found in DM"); 74163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7417306894acSVaclav Hapla } 7418306894acSVaclav Hapla 7419cc4c1da9SBarry Smith /*@ 7420c58f1c22SToby Isaac DMGetLabelOutput - Get the output flag for a given label 7421c58f1c22SToby Isaac 7422c58f1c22SToby Isaac Not Collective 7423c58f1c22SToby Isaac 7424c58f1c22SToby Isaac Input Parameters: 7425bb7acecfSBarry Smith + dm - The `DM` object 7426c58f1c22SToby Isaac - name - The label name 7427c58f1c22SToby Isaac 7428c58f1c22SToby Isaac Output Parameter: 7429c58f1c22SToby Isaac . output - The flag for output 7430c58f1c22SToby Isaac 7431c58f1c22SToby Isaac Level: developer 7432c58f1c22SToby Isaac 74331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMSetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7434c58f1c22SToby Isaac @*/ 7435d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelOutput(DM dm, const char name[], PetscBool *output) 7436d71ae5a4SJacob Faibussowitsch { 74375d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7438d67d17b1SMatthew G. Knepley const char *lname; 7439c58f1c22SToby Isaac 7440c58f1c22SToby Isaac PetscFunctionBegin; 7441c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 74424f572ea9SToby Isaac PetscAssertPointer(name, 2); 74434f572ea9SToby Isaac PetscAssertPointer(output, 3); 7444c58f1c22SToby Isaac while (next) { 7445c58f1c22SToby Isaac PetscBool flg; 7446c58f1c22SToby Isaac 74479566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 74489566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 74499371c9d4SSatish Balay if (flg) { 74509371c9d4SSatish Balay *output = next->output; 74513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 74529371c9d4SSatish Balay } 7453c58f1c22SToby Isaac next = next->next; 7454c58f1c22SToby Isaac } 745598921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7456c58f1c22SToby Isaac } 7457c58f1c22SToby Isaac 7458cc4c1da9SBarry Smith /*@ 7459bb7acecfSBarry Smith DMSetLabelOutput - Set if a given label should be saved to a `PetscViewer` in calls to `DMView()` 7460c58f1c22SToby Isaac 7461c58f1c22SToby Isaac Not Collective 7462c58f1c22SToby Isaac 7463c58f1c22SToby Isaac Input Parameters: 7464bb7acecfSBarry Smith + dm - The `DM` object 7465c58f1c22SToby Isaac . name - The label name 7466bb7acecfSBarry Smith - output - `PETSC_TRUE` to save the label to the viewer 7467c58f1c22SToby Isaac 7468c58f1c22SToby Isaac Level: developer 7469c58f1c22SToby Isaac 74701cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetOutputFlag()`, `DMGetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7471c58f1c22SToby Isaac @*/ 7472d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelOutput(DM dm, const char name[], PetscBool output) 7473d71ae5a4SJacob Faibussowitsch { 74745d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7475d67d17b1SMatthew G. Knepley const char *lname; 7476c58f1c22SToby Isaac 7477c58f1c22SToby Isaac PetscFunctionBegin; 7478c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 74794f572ea9SToby Isaac PetscAssertPointer(name, 2); 7480c58f1c22SToby Isaac while (next) { 7481c58f1c22SToby Isaac PetscBool flg; 7482c58f1c22SToby Isaac 74839566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 74849566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 74859371c9d4SSatish Balay if (flg) { 74869371c9d4SSatish Balay next->output = output; 74873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 74889371c9d4SSatish Balay } 7489c58f1c22SToby Isaac next = next->next; 7490c58f1c22SToby Isaac } 749198921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7492c58f1c22SToby Isaac } 7493c58f1c22SToby Isaac 7494c58f1c22SToby Isaac /*@ 7495bb7acecfSBarry Smith DMCopyLabels - Copy labels from one `DM` mesh to another `DM` with a superset of the points 7496c58f1c22SToby Isaac 749720f4b53cSBarry Smith Collective 7498c58f1c22SToby Isaac 7499d8d19677SJose E. Roman Input Parameters: 7500bb7acecfSBarry Smith + dmA - The `DM` object with initial labels 7501bb7acecfSBarry Smith . dmB - The `DM` object to which labels are copied 7502bb7acecfSBarry Smith . mode - Copy labels by pointers (`PETSC_OWN_POINTER`) or duplicate them (`PETSC_COPY_VALUES`) 7503bb7acecfSBarry Smith . all - Copy all labels including "depth", "dim", and "celltype" (`PETSC_TRUE`) which are otherwise ignored (`PETSC_FALSE`) 7504bb7acecfSBarry Smith - emode - How to behave when a `DMLabel` in the source and destination `DM`s with the same name is encountered (see `DMCopyLabelsMode`) 7505c58f1c22SToby Isaac 7506c58f1c22SToby Isaac Level: intermediate 7507c58f1c22SToby Isaac 7508bb7acecfSBarry Smith Note: 75092cbb9b06SVaclav Hapla This is typically used when interpolating or otherwise adding to a mesh, or testing. 7510c58f1c22SToby Isaac 75111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode` 7512c58f1c22SToby Isaac @*/ 7513d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyLabels(DM dmA, DM dmB, PetscCopyMode mode, PetscBool all, DMCopyLabelsMode emode) 7514d71ae5a4SJacob Faibussowitsch { 75152cbb9b06SVaclav Hapla DMLabel label, labelNew, labelOld; 7516c58f1c22SToby Isaac const char *name; 7517c58f1c22SToby Isaac PetscBool flg; 75185d80c0bfSVaclav Hapla DMLabelLink link; 7519c58f1c22SToby Isaac 75205d80c0bfSVaclav Hapla PetscFunctionBegin; 75215d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 75225d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 75235d80c0bfSVaclav Hapla PetscValidLogicalCollectiveEnum(dmA, mode, 3); 75245d80c0bfSVaclav Hapla PetscValidLogicalCollectiveBool(dmA, all, 4); 75257a8be351SBarry Smith PetscCheck(mode != PETSC_USE_POINTER, PetscObjectComm((PetscObject)dmA), PETSC_ERR_SUP, "PETSC_USE_POINTER not supported for objects"); 75263ba16761SJacob Faibussowitsch if (dmA == dmB) PetscFunctionReturn(PETSC_SUCCESS); 75275d80c0bfSVaclav Hapla for (link = dmA->labels; link; link = link->next) { 75285d80c0bfSVaclav Hapla label = link->label; 75299566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 75305d80c0bfSVaclav Hapla if (!all) { 75319566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &flg)); 7532c58f1c22SToby Isaac if (flg) continue; 75339566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "dim", &flg)); 75347d5acc75SStefano Zampini if (flg) continue; 75359566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &flg)); 7536ba2698f1SMatthew G. Knepley if (flg) continue; 75375d80c0bfSVaclav Hapla } 75389566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmB, name, &labelOld)); 75392cbb9b06SVaclav Hapla if (labelOld) { 75402cbb9b06SVaclav Hapla switch (emode) { 7541d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_KEEP: 7542d71ae5a4SJacob Faibussowitsch continue; 7543d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_REPLACE: 7544d71ae5a4SJacob Faibussowitsch PetscCall(DMRemoveLabelBySelf(dmB, &labelOld, PETSC_TRUE)); 7545d71ae5a4SJacob Faibussowitsch break; 7546d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_FAIL: 7547d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in destination DM", name); 7548d71ae5a4SJacob Faibussowitsch default: 7549d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Unhandled DMCopyLabelsMode %d", (int)emode); 75502cbb9b06SVaclav Hapla } 75512cbb9b06SVaclav Hapla } 75525d80c0bfSVaclav Hapla if (mode == PETSC_COPY_VALUES) { 75539566063dSJacob Faibussowitsch PetscCall(DMLabelDuplicate(label, &labelNew)); 75545d80c0bfSVaclav Hapla } else { 75555d80c0bfSVaclav Hapla labelNew = label; 75565d80c0bfSVaclav Hapla } 75579566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dmB, labelNew)); 75589566063dSJacob Faibussowitsch if (mode == PETSC_COPY_VALUES) PetscCall(DMLabelDestroy(&labelNew)); 7559c58f1c22SToby Isaac } 75603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7561c58f1c22SToby Isaac } 7562461a15a0SLisandro Dalcin 7563609dae6eSVaclav Hapla /*@C 7564b4028c23SStefano Zampini DMCompareLabels - Compare labels between two `DM` objects 7565609dae6eSVaclav Hapla 756620f4b53cSBarry Smith Collective; No Fortran Support 7567609dae6eSVaclav Hapla 7568609dae6eSVaclav Hapla Input Parameters: 7569bb7acecfSBarry Smith + dm0 - First `DM` object 7570bb7acecfSBarry Smith - dm1 - Second `DM` object 7571609dae6eSVaclav Hapla 7572a4e35b19SJacob Faibussowitsch Output Parameters: 75735efe38ccSVaclav Hapla + equal - (Optional) Flag whether labels of dm0 and dm1 are the same 757420f4b53cSBarry Smith - message - (Optional) Message describing the difference, or `NULL` if there is no difference 7575609dae6eSVaclav Hapla 7576609dae6eSVaclav Hapla Level: intermediate 7577609dae6eSVaclav Hapla 7578609dae6eSVaclav Hapla Notes: 7579bb7acecfSBarry Smith The output flag equal will be the same on all processes. 7580bb7acecfSBarry Smith 758120f4b53cSBarry Smith If equal is passed as `NULL` and difference is found, an error is thrown on all processes. 7582bb7acecfSBarry Smith 758320f4b53cSBarry Smith Make sure to pass equal is `NULL` on all processes or none of them. 7584609dae6eSVaclav Hapla 75855efe38ccSVaclav Hapla The output message is set independently on each rank. 7586bb7acecfSBarry Smith 7587bb7acecfSBarry Smith message must be freed with `PetscFree()` 7588bb7acecfSBarry Smith 758920f4b53cSBarry Smith If message is passed as `NULL` and a difference is found, the difference description is printed to stderr in synchronized manner. 7590bb7acecfSBarry Smith 759120f4b53cSBarry Smith Make sure to pass message as `NULL` on all processes or no processes. 7592609dae6eSVaclav Hapla 7593609dae6eSVaclav Hapla Labels are matched by name. If the number of labels and their names are equal, 7594bb7acecfSBarry Smith `DMLabelCompare()` is used to compare each pair of labels with the same name. 7595609dae6eSVaclav Hapla 7596cc4c1da9SBarry Smith Developer Note: 7597cc4c1da9SBarry Smith Can automatically generate the Fortran stub because `message` must be freed with `PetscFree()` 7598cc4c1da9SBarry Smith 75991cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`, `DMLabelCompare()` 7600609dae6eSVaclav Hapla @*/ 7601d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompareLabels(DM dm0, DM dm1, PetscBool *equal, char **message) 7602d71ae5a4SJacob Faibussowitsch { 76035efe38ccSVaclav Hapla PetscInt n, i; 7604609dae6eSVaclav Hapla char msg[PETSC_MAX_PATH_LEN] = ""; 76055efe38ccSVaclav Hapla PetscBool eq; 7606609dae6eSVaclav Hapla MPI_Comm comm; 76075efe38ccSVaclav Hapla PetscMPIInt rank; 7608609dae6eSVaclav Hapla 7609609dae6eSVaclav Hapla PetscFunctionBegin; 7610609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm0, DM_CLASSID, 1); 7611609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm1, DM_CLASSID, 2); 7612609dae6eSVaclav Hapla PetscCheckSameComm(dm0, 1, dm1, 2); 76134f572ea9SToby Isaac if (equal) PetscAssertPointer(equal, 3); 76144f572ea9SToby Isaac if (message) PetscAssertPointer(message, 4); 76159566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm0, &comm)); 76169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 76175efe38ccSVaclav Hapla { 76185efe38ccSVaclav Hapla PetscInt n1; 76195efe38ccSVaclav Hapla 76209566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm0, &n)); 76219566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm1, &n1)); 76225efe38ccSVaclav Hapla eq = (PetscBool)(n == n1); 762348a46eb9SPierre Jolivet if (!eq) PetscCall(PetscSNPrintf(msg, sizeof(msg), "Number of labels in dm0 = %" PetscInt_FMT " != %" PetscInt_FMT " = Number of labels in dm1", n, n1)); 7624712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 76255efe38ccSVaclav Hapla if (!eq) goto finish; 76265efe38ccSVaclav Hapla } 76275efe38ccSVaclav Hapla for (i = 0; i < n; i++) { 7628609dae6eSVaclav Hapla DMLabel l0, l1; 7629609dae6eSVaclav Hapla const char *name; 7630609dae6eSVaclav Hapla char *msgInner; 7631609dae6eSVaclav Hapla 7632609dae6eSVaclav Hapla /* Ignore label order */ 76339566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm0, i, &l0)); 76349566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)l0, &name)); 76359566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm1, name, &l1)); 7636609dae6eSVaclav Hapla if (!l1) { 763763a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(msg, sizeof(msg), "Label \"%s\" (#%" PetscInt_FMT " in dm0) not found in dm1", name, i)); 76385efe38ccSVaclav Hapla eq = PETSC_FALSE; 76395efe38ccSVaclav Hapla break; 7640609dae6eSVaclav Hapla } 76419566063dSJacob Faibussowitsch PetscCall(DMLabelCompare(comm, l0, l1, &eq, &msgInner)); 76429566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(msg, msgInner, sizeof(msg))); 76439566063dSJacob Faibussowitsch PetscCall(PetscFree(msgInner)); 76445efe38ccSVaclav Hapla if (!eq) break; 7645609dae6eSVaclav Hapla } 7646712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 7647609dae6eSVaclav Hapla finish: 76485efe38ccSVaclav Hapla /* If message output arg not set, print to stderr */ 7649609dae6eSVaclav Hapla if (message) { 7650609dae6eSVaclav Hapla *message = NULL; 765148a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscStrallocpy(msg, message)); 76525efe38ccSVaclav Hapla } else { 765348a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscSynchronizedFPrintf(comm, PETSC_STDERR, "[%d] %s\n", rank, msg)); 76549566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, PETSC_STDERR)); 76555efe38ccSVaclav Hapla } 76565efe38ccSVaclav Hapla /* If same output arg not ser and labels are not equal, throw error */ 76575efe38ccSVaclav Hapla if (equal) *equal = eq; 76587a8be351SBarry Smith else PetscCheck(eq, comm, PETSC_ERR_ARG_INCOMP, "DMLabels are not the same in dm0 and dm1"); 76593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7660609dae6eSVaclav Hapla } 7661609dae6eSVaclav Hapla 7662d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue_Fast(DM dm, DMLabel *label, const char name[], PetscInt point, PetscInt value) 7663d71ae5a4SJacob Faibussowitsch { 7664461a15a0SLisandro Dalcin PetscFunctionBegin; 76654f572ea9SToby Isaac PetscAssertPointer(label, 2); 7666461a15a0SLisandro Dalcin if (!*label) { 76679566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 76689566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, label)); 7669461a15a0SLisandro Dalcin } 76709566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(*label, point, value)); 76713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7672461a15a0SLisandro Dalcin } 7673461a15a0SLisandro Dalcin 76740fdc7489SMatthew Knepley /* 76750fdc7489SMatthew Knepley Many mesh programs, such as Triangle and TetGen, allow only a single label for each mesh point. Therefore, we would 76760fdc7489SMatthew Knepley like to encode all label IDs using a single, universal label. We can do this by assigning an integer to every 76770fdc7489SMatthew Knepley (label, id) pair in the DM. 76780fdc7489SMatthew Knepley 76790fdc7489SMatthew Knepley However, a mesh point can have multiple labels, so we must separate all these values. We will assign a bit range to 76800fdc7489SMatthew Knepley each label. 76810fdc7489SMatthew Knepley */ 7682d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreate(DM dm, DMUniversalLabel *universal) 7683d71ae5a4SJacob Faibussowitsch { 76840fdc7489SMatthew Knepley DMUniversalLabel ul; 76850fdc7489SMatthew Knepley PetscBool *active; 76860fdc7489SMatthew Knepley PetscInt pStart, pEnd, p, Nl, l, m; 76870fdc7489SMatthew Knepley 76880fdc7489SMatthew Knepley PetscFunctionBegin; 76899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &ul)); 76909566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "universal", &ul->label)); 76919566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 76929566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Nl, &active)); 76930fdc7489SMatthew Knepley ul->Nl = 0; 76940fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 76950fdc7489SMatthew Knepley PetscBool isdepth, iscelltype; 76960fdc7489SMatthew Knepley const char *name; 76970fdc7489SMatthew Knepley 76989566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 76999566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "depth", 6, &isdepth)); 77009566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "celltype", 9, &iscelltype)); 77010fdc7489SMatthew Knepley active[l] = !(isdepth || iscelltype) ? PETSC_TRUE : PETSC_FALSE; 77020fdc7489SMatthew Knepley if (active[l]) ++ul->Nl; 77030fdc7489SMatthew Knepley } 77049566063dSJacob Faibussowitsch PetscCall(PetscCalloc5(ul->Nl, &ul->names, ul->Nl, &ul->indices, ul->Nl + 1, &ul->offsets, ul->Nl + 1, &ul->bits, ul->Nl, &ul->masks)); 77050fdc7489SMatthew Knepley ul->Nv = 0; 77060fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 77070fdc7489SMatthew Knepley DMLabel label; 77080fdc7489SMatthew Knepley PetscInt nv; 77090fdc7489SMatthew Knepley const char *name; 77100fdc7489SMatthew Knepley 77110fdc7489SMatthew Knepley if (!active[l]) continue; 77129566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 77139566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 77149566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 77159566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(name, &ul->names[m])); 77160fdc7489SMatthew Knepley ul->indices[m] = l; 77170fdc7489SMatthew Knepley ul->Nv += nv; 77180fdc7489SMatthew Knepley ul->offsets[m + 1] = nv; 77190fdc7489SMatthew Knepley ul->bits[m + 1] = PetscCeilReal(PetscLog2Real(nv + 1)); 77200fdc7489SMatthew Knepley ++m; 77210fdc7489SMatthew Knepley } 77220fdc7489SMatthew Knepley for (l = 1; l <= ul->Nl; ++l) { 77230fdc7489SMatthew Knepley ul->offsets[l] = ul->offsets[l - 1] + ul->offsets[l]; 77240fdc7489SMatthew Knepley ul->bits[l] = ul->bits[l - 1] + ul->bits[l]; 77250fdc7489SMatthew Knepley } 77260fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 77270fdc7489SMatthew Knepley PetscInt b; 77280fdc7489SMatthew Knepley 77290fdc7489SMatthew Knepley ul->masks[l] = 0; 77300fdc7489SMatthew Knepley for (b = ul->bits[l]; b < ul->bits[l + 1]; ++b) ul->masks[l] |= 1 << b; 77310fdc7489SMatthew Knepley } 77329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ul->Nv, &ul->values)); 77330fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 77340fdc7489SMatthew Knepley DMLabel label; 77350fdc7489SMatthew Knepley IS valueIS; 77360fdc7489SMatthew Knepley const PetscInt *varr; 77370fdc7489SMatthew Knepley PetscInt nv, v; 77380fdc7489SMatthew Knepley 77390fdc7489SMatthew Knepley if (!active[l]) continue; 77409566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 77419566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 77429566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 77439566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &varr)); 7744ad540459SPierre Jolivet for (v = 0; v < nv; ++v) ul->values[ul->offsets[m] + v] = varr[v]; 77459566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &varr)); 77469566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 77479566063dSJacob Faibussowitsch PetscCall(PetscSortInt(nv, &ul->values[ul->offsets[m]])); 77480fdc7489SMatthew Knepley ++m; 77490fdc7489SMatthew Knepley } 77509566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 77510fdc7489SMatthew Knepley for (p = pStart; p < pEnd; ++p) { 77520fdc7489SMatthew Knepley PetscInt uval = 0; 77530fdc7489SMatthew Knepley PetscBool marked = PETSC_FALSE; 77540fdc7489SMatthew Knepley 77550fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 77560fdc7489SMatthew Knepley DMLabel label; 77570649b39aSStefano Zampini PetscInt val, defval, loc, nv; 77580fdc7489SMatthew Knepley 77590fdc7489SMatthew Knepley if (!active[l]) continue; 77609566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 77619566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, p, &val)); 77629566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defval)); 77639371c9d4SSatish Balay if (val == defval) { 77649371c9d4SSatish Balay ++m; 77659371c9d4SSatish Balay continue; 77669371c9d4SSatish Balay } 77670649b39aSStefano Zampini nv = ul->offsets[m + 1] - ul->offsets[m]; 77680fdc7489SMatthew Knepley marked = PETSC_TRUE; 77699566063dSJacob Faibussowitsch PetscCall(PetscFindInt(val, nv, &ul->values[ul->offsets[m]], &loc)); 777063a3b9bcSJacob Faibussowitsch PetscCheck(loc >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Label value %" PetscInt_FMT " not found in compression array", val); 77710fdc7489SMatthew Knepley uval += (loc + 1) << ul->bits[m]; 77720fdc7489SMatthew Knepley ++m; 77730fdc7489SMatthew Knepley } 77749566063dSJacob Faibussowitsch if (marked) PetscCall(DMLabelSetValue(ul->label, p, uval)); 77750fdc7489SMatthew Knepley } 77769566063dSJacob Faibussowitsch PetscCall(PetscFree(active)); 77770fdc7489SMatthew Knepley *universal = ul; 77783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77790fdc7489SMatthew Knepley } 77800fdc7489SMatthew Knepley 7781d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelDestroy(DMUniversalLabel *universal) 7782d71ae5a4SJacob Faibussowitsch { 77830fdc7489SMatthew Knepley PetscInt l; 77840fdc7489SMatthew Knepley 77850fdc7489SMatthew Knepley PetscFunctionBegin; 77869566063dSJacob Faibussowitsch for (l = 0; l < (*universal)->Nl; ++l) PetscCall(PetscFree((*universal)->names[l])); 77879566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&(*universal)->label)); 77889566063dSJacob Faibussowitsch PetscCall(PetscFree5((*universal)->names, (*universal)->indices, (*universal)->offsets, (*universal)->bits, (*universal)->masks)); 77899566063dSJacob Faibussowitsch PetscCall(PetscFree((*universal)->values)); 77909566063dSJacob Faibussowitsch PetscCall(PetscFree(*universal)); 77910fdc7489SMatthew Knepley *universal = NULL; 77923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77930fdc7489SMatthew Knepley } 77940fdc7489SMatthew Knepley 7795d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelGetLabel(DMUniversalLabel ul, DMLabel *ulabel) 7796d71ae5a4SJacob Faibussowitsch { 77970fdc7489SMatthew Knepley PetscFunctionBegin; 77984f572ea9SToby Isaac PetscAssertPointer(ulabel, 2); 77990fdc7489SMatthew Knepley *ulabel = ul->label; 78003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78010fdc7489SMatthew Knepley } 78020fdc7489SMatthew Knepley 7803d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreateLabels(DMUniversalLabel ul, PetscBool preserveOrder, DM dm) 7804d71ae5a4SJacob Faibussowitsch { 78050fdc7489SMatthew Knepley PetscInt Nl = ul->Nl, l; 78060fdc7489SMatthew Knepley 78070fdc7489SMatthew Knepley PetscFunctionBegin; 7808064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dm, DM_CLASSID, 3); 78090fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 78109566063dSJacob Faibussowitsch if (preserveOrder) PetscCall(DMCreateLabelAtIndex(dm, ul->indices[l], ul->names[l])); 78119566063dSJacob Faibussowitsch else PetscCall(DMCreateLabel(dm, ul->names[l])); 78120fdc7489SMatthew Knepley } 78130fdc7489SMatthew Knepley if (preserveOrder) { 78140fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 78150fdc7489SMatthew Knepley const char *name; 78160fdc7489SMatthew Knepley PetscBool match; 78170fdc7489SMatthew Knepley 78189566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, ul->indices[l], &name)); 78199566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, ul->names[l], &match)); 782063a3b9bcSJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Label %" PetscInt_FMT " name %s does not match new name %s", l, name, ul->names[l]); 78210fdc7489SMatthew Knepley } 78220fdc7489SMatthew Knepley } 78233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78240fdc7489SMatthew Knepley } 78250fdc7489SMatthew Knepley 7826d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelSetLabelValue(DMUniversalLabel ul, DM dm, PetscBool useIndex, PetscInt p, PetscInt value) 7827d71ae5a4SJacob Faibussowitsch { 78280fdc7489SMatthew Knepley PetscInt l; 78290fdc7489SMatthew Knepley 78300fdc7489SMatthew Knepley PetscFunctionBegin; 78310fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 78320fdc7489SMatthew Knepley DMLabel label; 78330fdc7489SMatthew Knepley PetscInt lval = (value & ul->masks[l]) >> ul->bits[l]; 78340fdc7489SMatthew Knepley 78350fdc7489SMatthew Knepley if (lval) { 78369566063dSJacob Faibussowitsch if (useIndex) PetscCall(DMGetLabelByNum(dm, ul->indices[l], &label)); 78379566063dSJacob Faibussowitsch else PetscCall(DMGetLabel(dm, ul->names[l], &label)); 78389566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, ul->values[ul->offsets[l] + lval - 1])); 78390fdc7489SMatthew Knepley } 78400fdc7489SMatthew Knepley } 78413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78420fdc7489SMatthew Knepley } 7843a8fb8f29SToby Isaac 7844a8fb8f29SToby Isaac /*@ 7845bb7acecfSBarry Smith DMGetCoarseDM - Get the coarse `DM`from which this `DM` was obtained by refinement 7846bb7acecfSBarry Smith 784720f4b53cSBarry Smith Not Collective 7848a8fb8f29SToby Isaac 7849a8fb8f29SToby Isaac Input Parameter: 7850bb7acecfSBarry Smith . dm - The `DM` object 7851a8fb8f29SToby Isaac 7852a8fb8f29SToby Isaac Output Parameter: 7853bb7acecfSBarry Smith . cdm - The coarse `DM` 7854a8fb8f29SToby Isaac 7855a8fb8f29SToby Isaac Level: intermediate 7856a8fb8f29SToby Isaac 78571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetCoarseDM()`, `DMCoarsen()` 7858a8fb8f29SToby Isaac @*/ 7859d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarseDM(DM dm, DM *cdm) 7860d71ae5a4SJacob Faibussowitsch { 7861a8fb8f29SToby Isaac PetscFunctionBegin; 7862a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 78634f572ea9SToby Isaac PetscAssertPointer(cdm, 2); 7864a8fb8f29SToby Isaac *cdm = dm->coarseMesh; 78653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7866a8fb8f29SToby Isaac } 7867a8fb8f29SToby Isaac 7868a8fb8f29SToby Isaac /*@ 7869bb7acecfSBarry Smith DMSetCoarseDM - Set the coarse `DM` from which this `DM` was obtained by refinement 7870a8fb8f29SToby Isaac 7871a8fb8f29SToby Isaac Input Parameters: 7872bb7acecfSBarry Smith + dm - The `DM` object 7873bb7acecfSBarry Smith - cdm - The coarse `DM` 7874a8fb8f29SToby Isaac 7875a8fb8f29SToby Isaac Level: intermediate 7876a8fb8f29SToby Isaac 7877bb7acecfSBarry Smith Note: 7878bb7acecfSBarry Smith Normally this is set automatically by `DMRefine()` 7879bb7acecfSBarry Smith 78801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCoarseDM()`, `DMCoarsen()`, `DMSetRefine()`, `DMSetFineDM()` 7881a8fb8f29SToby Isaac @*/ 7882d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarseDM(DM dm, DM cdm) 7883d71ae5a4SJacob Faibussowitsch { 7884a8fb8f29SToby Isaac PetscFunctionBegin; 7885a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7886a8fb8f29SToby Isaac if (cdm) PetscValidHeaderSpecific(cdm, DM_CLASSID, 2); 788789d734beSBarry Smith if (dm == cdm) cdm = NULL; 78889566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)cdm)); 78899566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->coarseMesh)); 7890a8fb8f29SToby Isaac dm->coarseMesh = cdm; 78913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7892a8fb8f29SToby Isaac } 7893a8fb8f29SToby Isaac 789488bdff64SToby Isaac /*@ 7895bb7acecfSBarry Smith DMGetFineDM - Get the fine mesh from which this `DM` was obtained by coarsening 789688bdff64SToby Isaac 789788bdff64SToby Isaac Input Parameter: 7898bb7acecfSBarry Smith . dm - The `DM` object 789988bdff64SToby Isaac 790088bdff64SToby Isaac Output Parameter: 7901bb7acecfSBarry Smith . fdm - The fine `DM` 790288bdff64SToby Isaac 790388bdff64SToby Isaac Level: intermediate 790488bdff64SToby Isaac 79051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetFineDM()`, `DMCoarsen()`, `DMRefine()` 790688bdff64SToby Isaac @*/ 7907d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFineDM(DM dm, DM *fdm) 7908d71ae5a4SJacob Faibussowitsch { 790988bdff64SToby Isaac PetscFunctionBegin; 791088bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 79114f572ea9SToby Isaac PetscAssertPointer(fdm, 2); 791288bdff64SToby Isaac *fdm = dm->fineMesh; 79133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 791488bdff64SToby Isaac } 791588bdff64SToby Isaac 791688bdff64SToby Isaac /*@ 7917bb7acecfSBarry Smith DMSetFineDM - Set the fine mesh from which this was obtained by coarsening 791888bdff64SToby Isaac 791988bdff64SToby Isaac Input Parameters: 7920bb7acecfSBarry Smith + dm - The `DM` object 7921bb7acecfSBarry Smith - fdm - The fine `DM` 792288bdff64SToby Isaac 7923bb7acecfSBarry Smith Level: developer 792488bdff64SToby Isaac 7925bb7acecfSBarry Smith Note: 7926bb7acecfSBarry Smith Normally this is set automatically by `DMCoarsen()` 7927bb7acecfSBarry Smith 79281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFineDM()`, `DMCoarsen()`, `DMRefine()` 792988bdff64SToby Isaac @*/ 7930d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFineDM(DM dm, DM fdm) 7931d71ae5a4SJacob Faibussowitsch { 793288bdff64SToby Isaac PetscFunctionBegin; 793388bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 793488bdff64SToby Isaac if (fdm) PetscValidHeaderSpecific(fdm, DM_CLASSID, 2); 793589d734beSBarry Smith if (dm == fdm) fdm = NULL; 79369566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fdm)); 79379566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->fineMesh)); 793888bdff64SToby Isaac dm->fineMesh = fdm; 79393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 794088bdff64SToby Isaac } 794188bdff64SToby Isaac 7942a6ba4734SToby Isaac /*@C 7943bb7acecfSBarry Smith DMAddBoundary - Add a boundary condition to a model represented by a `DM` 7944a6ba4734SToby Isaac 794520f4b53cSBarry Smith Collective 7946783e2ec8SMatthew G. Knepley 7947a6ba4734SToby Isaac Input Parameters: 7948bb7acecfSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 7949bb7acecfSBarry Smith . type - The type of condition, e.g. `DM_BC_ESSENTIAL_ANALYTIC`, `DM_BC_ESSENTIAL_FIELD` (Dirichlet), or `DM_BC_NATURAL` (Neumann) 7950a6ba4734SToby Isaac . name - The BC name 795145480ffeSMatthew G. Knepley . label - The label defining constrained points 7952bb7acecfSBarry Smith . Nv - The number of `DMLabel` values for constrained points 795345480ffeSMatthew G. Knepley . values - An array of values for constrained points 7954a6ba4734SToby Isaac . field - The field to constrain 795545480ffeSMatthew G. Knepley . Nc - The number of constrained field components (0 will constrain all fields) 7956a6ba4734SToby Isaac . comps - An array of constrained component numbers 7957a6ba4734SToby Isaac . bcFunc - A pointwise function giving boundary values 795856cf3b9cSMatthew G. Knepley . bcFunc_t - A pointwise function giving the time deriative of the boundary values, or NULL 7959a6ba4734SToby Isaac - ctx - An optional user context for bcFunc 7960a6ba4734SToby Isaac 796145480ffeSMatthew G. Knepley Output Parameter: 796245480ffeSMatthew G. Knepley . bd - (Optional) Boundary number 796345480ffeSMatthew G. Knepley 7964a6ba4734SToby Isaac Options Database Keys: 7965a6ba4734SToby Isaac + -bc_<boundary name> <num> - Overrides the boundary ids 7966a6ba4734SToby Isaac - -bc_<boundary name>_comp <num> - Overrides the boundary components 7967a6ba4734SToby Isaac 796820f4b53cSBarry Smith Level: intermediate 796920f4b53cSBarry Smith 7970bb7acecfSBarry Smith Notes: 7971aeebefc2SPierre Jolivet Both bcFunc and bcFunc_t will depend on the boundary condition type. If the type if `DM_BC_ESSENTIAL`, then the calling sequence is\: 797273ff1848SBarry Smith .vb 797373ff1848SBarry Smith void bcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[]) 797473ff1848SBarry Smith .ve 797556cf3b9cSMatthew G. Knepley 7976a4e35b19SJacob Faibussowitsch If the type is `DM_BC_ESSENTIAL_FIELD` or other _FIELD value, then the calling sequence is\: 797756cf3b9cSMatthew G. Knepley 797820f4b53cSBarry Smith .vb 797920f4b53cSBarry Smith void bcFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux, 798020f4b53cSBarry Smith const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 798120f4b53cSBarry Smith const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 798220f4b53cSBarry Smith PetscReal time, const PetscReal x[], PetscScalar bcval[]) 798320f4b53cSBarry Smith .ve 798456cf3b9cSMatthew G. Knepley + dim - the spatial dimension 798556cf3b9cSMatthew G. Knepley . Nf - the number of fields 798656cf3b9cSMatthew G. Knepley . uOff - the offset into u[] and u_t[] for each field 798756cf3b9cSMatthew G. Knepley . uOff_x - the offset into u_x[] for each field 798856cf3b9cSMatthew G. Knepley . u - each field evaluated at the current point 798956cf3b9cSMatthew G. Knepley . u_t - the time derivative of each field evaluated at the current point 799056cf3b9cSMatthew G. Knepley . u_x - the gradient of each field evaluated at the current point 799156cf3b9cSMatthew G. Knepley . aOff - the offset into a[] and a_t[] for each auxiliary field 799256cf3b9cSMatthew G. Knepley . aOff_x - the offset into a_x[] for each auxiliary field 799356cf3b9cSMatthew G. Knepley . a - each auxiliary field evaluated at the current point 799456cf3b9cSMatthew G. Knepley . a_t - the time derivative of each auxiliary field evaluated at the current point 799556cf3b9cSMatthew G. Knepley . a_x - the gradient of auxiliary each field evaluated at the current point 799656cf3b9cSMatthew G. Knepley . t - current time 799756cf3b9cSMatthew G. Knepley . x - coordinates of the current point 799856cf3b9cSMatthew G. Knepley . numConstants - number of constant parameters 799956cf3b9cSMatthew G. Knepley . constants - constant parameters 800056cf3b9cSMatthew G. Knepley - bcval - output values at the current point 800156cf3b9cSMatthew G. Knepley 80021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DSGetBoundary()`, `PetscDSAddBoundary()` 8003a6ba4734SToby Isaac @*/ 8004d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddBoundary(DM dm, DMBoundaryConditionType type, const char name[], DMLabel label, PetscInt Nv, const PetscInt values[], PetscInt field, PetscInt Nc, const PetscInt comps[], void (*bcFunc)(void), void (*bcFunc_t)(void), void *ctx, PetscInt *bd) 8005d71ae5a4SJacob Faibussowitsch { 8006e5e52638SMatthew G. Knepley PetscDS ds; 8007a6ba4734SToby Isaac 8008a6ba4734SToby Isaac PetscFunctionBegin; 8009a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8010783e2ec8SMatthew G. Knepley PetscValidLogicalCollectiveEnum(dm, type, 2); 801145480ffeSMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 4); 801245480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nv, 5); 801345480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, field, 7); 801445480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 8); 801501a5d20dSJed Brown PetscCheck(!dm->localSection, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot add boundary to DM after creating local section"); 80169566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 8017799db056SMatthew G. Knepley /* Complete label */ 8018799db056SMatthew G. Knepley if (label) { 8019799db056SMatthew G. Knepley PetscObject obj; 8020799db056SMatthew G. Knepley PetscClassId id; 8021799db056SMatthew G. Knepley 8022799db056SMatthew G. Knepley PetscCall(DMGetField(dm, field, NULL, &obj)); 8023799db056SMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 8024799db056SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 8025799db056SMatthew G. Knepley DM plex; 8026799db056SMatthew G. Knepley 8027799db056SMatthew G. Knepley PetscCall(DMConvert(dm, DMPLEX, &plex)); 8028799db056SMatthew G. Knepley if (plex) PetscCall(DMPlexLabelComplete(plex, label)); 8029799db056SMatthew G. Knepley PetscCall(DMDestroy(&plex)); 8030799db056SMatthew G. Knepley } 8031799db056SMatthew G. Knepley } 80329566063dSJacob Faibussowitsch PetscCall(PetscDSAddBoundary(ds, type, name, label, Nv, values, field, Nc, comps, bcFunc, bcFunc_t, ctx, bd)); 80333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8034a6ba4734SToby Isaac } 8035a6ba4734SToby Isaac 803645480ffeSMatthew G. Knepley /* TODO Remove this since now the structures are the same */ 8037d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPopulateBoundary(DM dm) 8038d71ae5a4SJacob Faibussowitsch { 8039e5e52638SMatthew G. Knepley PetscDS ds; 8040dff059c6SToby Isaac DMBoundary *lastnext; 8041e6f8dbb6SToby Isaac DSBoundary dsbound; 8042e6f8dbb6SToby Isaac 8043e6f8dbb6SToby Isaac PetscFunctionBegin; 80449566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 8045e5e52638SMatthew G. Knepley dsbound = ds->boundary; 804647a1f5adSToby Isaac if (dm->boundary) { 804747a1f5adSToby Isaac DMBoundary next = dm->boundary; 804847a1f5adSToby Isaac 804947a1f5adSToby Isaac /* quick check to see if the PetscDS has changed */ 80503ba16761SJacob Faibussowitsch if (next->dsboundary == dsbound) PetscFunctionReturn(PETSC_SUCCESS); 805147a1f5adSToby Isaac /* the PetscDS has changed: tear down and rebuild */ 805247a1f5adSToby Isaac while (next) { 805347a1f5adSToby Isaac DMBoundary b = next; 805447a1f5adSToby Isaac 805547a1f5adSToby Isaac next = b->next; 80569566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 8057a6ba4734SToby Isaac } 805847a1f5adSToby Isaac dm->boundary = NULL; 8059a6ba4734SToby Isaac } 806047a1f5adSToby Isaac 8061f4f49eeaSPierre Jolivet lastnext = &dm->boundary; 8062e6f8dbb6SToby Isaac while (dsbound) { 8063e6f8dbb6SToby Isaac DMBoundary dmbound; 8064e6f8dbb6SToby Isaac 80659566063dSJacob Faibussowitsch PetscCall(PetscNew(&dmbound)); 8066e6f8dbb6SToby Isaac dmbound->dsboundary = dsbound; 806745480ffeSMatthew G. Knepley dmbound->label = dsbound->label; 806847a1f5adSToby Isaac /* push on the back instead of the front so that it is in the same order as in the PetscDS */ 8069dff059c6SToby Isaac *lastnext = dmbound; 8070f4f49eeaSPierre Jolivet lastnext = &dmbound->next; 8071dff059c6SToby Isaac dsbound = dsbound->next; 8072a6ba4734SToby Isaac } 80733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8074a6ba4734SToby Isaac } 8075a6ba4734SToby Isaac 8076bb7acecfSBarry Smith /* TODO: missing manual page */ 8077d71ae5a4SJacob Faibussowitsch PetscErrorCode DMIsBoundaryPoint(DM dm, PetscInt point, PetscBool *isBd) 8078d71ae5a4SJacob Faibussowitsch { 8079b95f2879SToby Isaac DMBoundary b; 8080a6ba4734SToby Isaac 8081a6ba4734SToby Isaac PetscFunctionBegin; 8082a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 80834f572ea9SToby Isaac PetscAssertPointer(isBd, 3); 8084a6ba4734SToby Isaac *isBd = PETSC_FALSE; 80859566063dSJacob Faibussowitsch PetscCall(DMPopulateBoundary(dm)); 8086b95f2879SToby Isaac b = dm->boundary; 8087a6ba4734SToby Isaac while (b && !(*isBd)) { 8088e6f8dbb6SToby Isaac DMLabel label = b->label; 8089e6f8dbb6SToby Isaac DSBoundary dsb = b->dsboundary; 8090a6ba4734SToby Isaac PetscInt i; 8091a6ba4734SToby Isaac 809245480ffeSMatthew G. Knepley if (label) { 80939566063dSJacob Faibussowitsch for (i = 0; i < dsb->Nv && !(*isBd); ++i) PetscCall(DMLabelStratumHasPoint(label, dsb->values[i], point, isBd)); 8094a6ba4734SToby Isaac } 8095a6ba4734SToby Isaac b = b->next; 8096a6ba4734SToby Isaac } 80973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8098a6ba4734SToby Isaac } 80994d6f44ffSToby Isaac 81004d6f44ffSToby Isaac /*@C 8101bb7acecfSBarry Smith DMProjectFunction - This projects the given function into the function space provided by a `DM`, putting the coefficients in a global vector. 8102a6e0b375SMatthew G. Knepley 810320f4b53cSBarry Smith Collective 81044d6f44ffSToby Isaac 81054d6f44ffSToby Isaac Input Parameters: 8106bb7acecfSBarry Smith + dm - The `DM` 81070709b2feSToby Isaac . time - The time 81084d6f44ffSToby Isaac . funcs - The coordinate functions to evaluate, one per field 81094d6f44ffSToby Isaac . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 81104d6f44ffSToby Isaac - mode - The insertion mode for values 81114d6f44ffSToby Isaac 81124d6f44ffSToby Isaac Output Parameter: 81134d6f44ffSToby Isaac . X - vector 81144d6f44ffSToby Isaac 811520f4b53cSBarry Smith Calling sequence of `funcs`: 81164d6f44ffSToby Isaac + dim - The spatial dimension 81178ec8862eSJed Brown . time - The time at which to sample 81184d6f44ffSToby Isaac . x - The coordinates 811977b739a6SMatthew Knepley . Nc - The number of components 81204d6f44ffSToby Isaac . u - The output field values 81214d6f44ffSToby Isaac - ctx - optional user-defined function context 81224d6f44ffSToby Isaac 81234d6f44ffSToby Isaac Level: developer 81244d6f44ffSToby Isaac 8125bb7acecfSBarry Smith Developer Notes: 8126bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8127bb7acecfSBarry Smith 8128bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8129bb7acecfSBarry Smith 81301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 81314d6f44ffSToby Isaac @*/ 8132a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunction(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X) 8133d71ae5a4SJacob Faibussowitsch { 81344d6f44ffSToby Isaac Vec localX; 81354d6f44ffSToby Isaac 81364d6f44ffSToby Isaac PetscFunctionBegin; 81374d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8138708be2fdSJed Brown PetscCall(PetscLogEventBegin(DM_ProjectFunction, dm, X, 0, 0)); 81399566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 8140f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 81419566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, mode, localX)); 81429566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 81439566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 81449566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 8145708be2fdSJed Brown PetscCall(PetscLogEventEnd(DM_ProjectFunction, dm, X, 0, 0)); 81463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 81474d6f44ffSToby Isaac } 81484d6f44ffSToby Isaac 8149a6e0b375SMatthew G. Knepley /*@C 8150bb7acecfSBarry Smith DMProjectFunctionLocal - This projects the given function into the function space provided by a `DM`, putting the coefficients in a local vector. 8151a6e0b375SMatthew G. Knepley 815220f4b53cSBarry Smith Not Collective 8153a6e0b375SMatthew G. Knepley 8154a6e0b375SMatthew G. Knepley Input Parameters: 8155bb7acecfSBarry Smith + dm - The `DM` 8156a6e0b375SMatthew G. Knepley . time - The time 8157a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8158a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 8159a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8160a6e0b375SMatthew G. Knepley 8161a6e0b375SMatthew G. Knepley Output Parameter: 8162a6e0b375SMatthew G. Knepley . localX - vector 8163a6e0b375SMatthew G. Knepley 816420f4b53cSBarry Smith Calling sequence of `funcs`: 8165a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8166a4e35b19SJacob Faibussowitsch . time - The current timestep 8167a6e0b375SMatthew G. Knepley . x - The coordinates 816877b739a6SMatthew Knepley . Nc - The number of components 8169a6e0b375SMatthew G. Knepley . u - The output field values 8170a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8171a6e0b375SMatthew G. Knepley 8172a6e0b375SMatthew G. Knepley Level: developer 8173a6e0b375SMatthew G. Knepley 8174bb7acecfSBarry Smith Developer Notes: 8175bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8176bb7acecfSBarry Smith 8177bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8178bb7acecfSBarry Smith 81791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 8180a6e0b375SMatthew G. Knepley @*/ 8181a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX) 8182d71ae5a4SJacob Faibussowitsch { 81834d6f44ffSToby Isaac PetscFunctionBegin; 81844d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8185064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 8186fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfunctionlocal, time, funcs, ctxs, mode, localX); 81873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 81884d6f44ffSToby Isaac } 81894d6f44ffSToby Isaac 8190a6e0b375SMatthew G. Knepley /*@C 8191bb7acecfSBarry Smith DMProjectFunctionLabel - This projects the given function into the function space provided by the `DM`, putting the coefficients in a global vector, setting values only for points in the given label. 8192a6e0b375SMatthew G. Knepley 819320f4b53cSBarry Smith Collective 8194a6e0b375SMatthew G. Knepley 8195a6e0b375SMatthew G. Knepley Input Parameters: 8196bb7acecfSBarry Smith + dm - The `DM` 8197a6e0b375SMatthew G. Knepley . time - The time 8198a4e35b19SJacob Faibussowitsch . numIds - The number of ids 8199a4e35b19SJacob Faibussowitsch . ids - The ids 8200a4e35b19SJacob Faibussowitsch . Nc - The number of components 8201a4e35b19SJacob Faibussowitsch . comps - The components 8202bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8203a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8204bb7acecfSBarry Smith . ctxs - Optional array of contexts to pass to each coordinate function. ctxs may be null. 8205a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8206a6e0b375SMatthew G. Knepley 8207a6e0b375SMatthew G. Knepley Output Parameter: 8208a6e0b375SMatthew G. Knepley . X - vector 8209a6e0b375SMatthew G. Knepley 821020f4b53cSBarry Smith Calling sequence of `funcs`: 8211a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8212a4e35b19SJacob Faibussowitsch . time - The current timestep 8213a6e0b375SMatthew G. Knepley . x - The coordinates 821477b739a6SMatthew Knepley . Nc - The number of components 8215a6e0b375SMatthew G. Knepley . u - The output field values 8216a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8217a6e0b375SMatthew G. Knepley 8218a6e0b375SMatthew G. Knepley Level: developer 8219a6e0b375SMatthew G. Knepley 8220bb7acecfSBarry Smith Developer Notes: 8221bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8222bb7acecfSBarry Smith 8223bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8224bb7acecfSBarry Smith 82251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`, `DMComputeL2Diff()` 8226a6e0b375SMatthew G. Knepley @*/ 8227a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X) 8228d71ae5a4SJacob Faibussowitsch { 82292c53366bSMatthew G. Knepley Vec localX; 82302c53366bSMatthew G. Knepley 82312c53366bSMatthew G. Knepley PetscFunctionBegin; 82322c53366bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 82339566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 8234f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 82359566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX)); 82369566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 82379566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 82389566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 82393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82402c53366bSMatthew G. Knepley } 82412c53366bSMatthew G. Knepley 8242a6e0b375SMatthew G. Knepley /*@C 8243bb7acecfSBarry Smith DMProjectFunctionLabelLocal - This projects the given function into the function space provided by the `DM`, putting the coefficients in a local vector, setting values only for points in the given label. 8244a6e0b375SMatthew G. Knepley 824520f4b53cSBarry Smith Not Collective 8246a6e0b375SMatthew G. Knepley 8247a6e0b375SMatthew G. Knepley Input Parameters: 8248bb7acecfSBarry Smith + dm - The `DM` 8249a6e0b375SMatthew G. Knepley . time - The time 8250bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8251a4e35b19SJacob Faibussowitsch . numIds - The number of ids 8252a4e35b19SJacob Faibussowitsch . ids - The ids 8253a4e35b19SJacob Faibussowitsch . Nc - The number of components 8254a4e35b19SJacob Faibussowitsch . comps - The components 8255a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8256a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 8257a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8258a6e0b375SMatthew G. Knepley 8259a6e0b375SMatthew G. Knepley Output Parameter: 8260a6e0b375SMatthew G. Knepley . localX - vector 8261a6e0b375SMatthew G. Knepley 826220f4b53cSBarry Smith Calling sequence of `funcs`: 8263a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8264a4e35b19SJacob Faibussowitsch . time - The current time 8265a6e0b375SMatthew G. Knepley . x - The coordinates 826677b739a6SMatthew Knepley . Nc - The number of components 8267a6e0b375SMatthew G. Knepley . u - The output field values 8268a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8269a6e0b375SMatthew G. Knepley 8270a6e0b375SMatthew G. Knepley Level: developer 8271a6e0b375SMatthew G. Knepley 8272bb7acecfSBarry Smith Developer Notes: 8273bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8274bb7acecfSBarry Smith 8275bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8276bb7acecfSBarry Smith 82771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 8278a6e0b375SMatthew G. Knepley @*/ 8279a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX) 8280d71ae5a4SJacob Faibussowitsch { 82814d6f44ffSToby Isaac PetscFunctionBegin; 82824d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8283064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8284fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfunctionlabellocal, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX); 82853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82864d6f44ffSToby Isaac } 82872716604bSToby Isaac 8288a6e0b375SMatthew G. Knepley /*@C 8289bb7acecfSBarry Smith DMProjectFieldLocal - This projects the given function of the input fields into the function space provided by the `DM`, putting the coefficients in a local vector. 8290a6e0b375SMatthew G. Knepley 829120f4b53cSBarry Smith Not Collective 8292a6e0b375SMatthew G. Knepley 8293a6e0b375SMatthew G. Knepley Input Parameters: 8294bb7acecfSBarry Smith + dm - The `DM` 8295a6e0b375SMatthew G. Knepley . time - The time 829620f4b53cSBarry Smith . localU - The input field vector; may be `NULL` if projection is defined purely by coordinates 8297a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8298a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8299a6e0b375SMatthew G. Knepley 8300a6e0b375SMatthew G. Knepley Output Parameter: 8301a6e0b375SMatthew G. Knepley . localX - The output vector 8302a6e0b375SMatthew G. Knepley 830320f4b53cSBarry Smith Calling sequence of `funcs`: 8304a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8305a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8306a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8307a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8308a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8309a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8310a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8311a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8312a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8313a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8314a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8315a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8316a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8317a6e0b375SMatthew G. Knepley . t - The current time 8318a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8319a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8320a6e0b375SMatthew G. Knepley . constants - The value of each constant 8321a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8322a6e0b375SMatthew G. Knepley 832373ff1848SBarry Smith Level: intermediate 832473ff1848SBarry Smith 8325bb7acecfSBarry Smith Note: 8326bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8327bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8328bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8329a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8330a6e0b375SMatthew G. Knepley 8331bb7acecfSBarry Smith Developer Notes: 8332bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8333bb7acecfSBarry Smith 8334bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8335bb7acecfSBarry Smith 8336a4e35b19SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, 8337a4e35b19SJacob Faibussowitsch `DMProjectFunction()`, `DMComputeL2Diff()` 8338a6e0b375SMatthew G. Knepley @*/ 8339a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLocal(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8340d71ae5a4SJacob Faibussowitsch { 83418c6c5593SMatthew G. Knepley PetscFunctionBegin; 83428c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8343eb8f539aSJed Brown if (localU) PetscValidHeaderSpecific(localU, VEC_CLASSID, 3); 83448c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 8345fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfieldlocal, time, localU, funcs, mode, localX); 83463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 83478c6c5593SMatthew G. Knepley } 83488c6c5593SMatthew G. Knepley 8349a6e0b375SMatthew G. Knepley /*@C 8350a6e0b375SMatthew G. Knepley DMProjectFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain specified by the label. 8351a6e0b375SMatthew G. Knepley 835220f4b53cSBarry Smith Not Collective 8353a6e0b375SMatthew G. Knepley 8354a6e0b375SMatthew G. Knepley Input Parameters: 8355bb7acecfSBarry Smith + dm - The `DM` 8356a6e0b375SMatthew G. Knepley . time - The time 8357bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8358a6e0b375SMatthew G. Knepley . numIds - The number of label ids to use 8359a6e0b375SMatthew G. Knepley . ids - The label ids to use for marking 8360bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 836120f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8362a6e0b375SMatthew G. Knepley . localU - The input field vector 8363a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8364a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8365a6e0b375SMatthew G. Knepley 8366a6e0b375SMatthew G. Knepley Output Parameter: 8367a6e0b375SMatthew G. Knepley . localX - The output vector 8368a6e0b375SMatthew G. Knepley 836920f4b53cSBarry Smith Calling sequence of `funcs`: 8370a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8371a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8372a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8373a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8374a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8375a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8376a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8377a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8378a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8379a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8380a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8381a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8382a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8383a6e0b375SMatthew G. Knepley . t - The current time 8384a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8385a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8386a6e0b375SMatthew G. Knepley . constants - The value of each constant 8387a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8388a6e0b375SMatthew G. Knepley 838973ff1848SBarry Smith Level: intermediate 839073ff1848SBarry Smith 8391bb7acecfSBarry Smith Note: 8392bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8393bb7acecfSBarry Smith The input `DM`, attached to localU, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8394bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8395a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8396a6e0b375SMatthew G. Knepley 8397bb7acecfSBarry Smith Developer Notes: 8398bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8399bb7acecfSBarry Smith 8400bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8401bb7acecfSBarry Smith 84021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabel()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8403a6e0b375SMatthew G. Knepley @*/ 8404a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8405d71ae5a4SJacob Faibussowitsch { 84068c6c5593SMatthew G. Knepley PetscFunctionBegin; 84078c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8408064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8409064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8410fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX); 84113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 84128c6c5593SMatthew G. Knepley } 84138c6c5593SMatthew G. Knepley 84142716604bSToby Isaac /*@C 8415d29d7c6eSMatthew G. Knepley DMProjectFieldLabel - This projects the given function of the input fields into the function space provided, putting the coefficients in a global vector, calculating only over the portion of the domain specified by the label. 8416d29d7c6eSMatthew G. Knepley 841720f4b53cSBarry Smith Not Collective 8418d29d7c6eSMatthew G. Knepley 8419d29d7c6eSMatthew G. Knepley Input Parameters: 8420bb7acecfSBarry Smith + dm - The `DM` 8421d29d7c6eSMatthew G. Knepley . time - The time 8422bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8423d29d7c6eSMatthew G. Knepley . numIds - The number of label ids to use 8424d29d7c6eSMatthew G. Knepley . ids - The label ids to use for marking 8425bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 842620f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8427d29d7c6eSMatthew G. Knepley . U - The input field vector 8428d29d7c6eSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8429d29d7c6eSMatthew G. Knepley - mode - The insertion mode for values 8430d29d7c6eSMatthew G. Knepley 8431d29d7c6eSMatthew G. Knepley Output Parameter: 8432d29d7c6eSMatthew G. Knepley . X - The output vector 8433d29d7c6eSMatthew G. Knepley 843420f4b53cSBarry Smith Calling sequence of `funcs`: 8435d29d7c6eSMatthew G. Knepley + dim - The spatial dimension 8436d29d7c6eSMatthew G. Knepley . Nf - The number of input fields 8437d29d7c6eSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8438d29d7c6eSMatthew G. Knepley . uOff - The offset of each field in u[] 8439d29d7c6eSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8440d29d7c6eSMatthew G. Knepley . u - The field values at this point in space 8441d29d7c6eSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8442d29d7c6eSMatthew G. Knepley . u_x - The field derivatives at this point in space 8443d29d7c6eSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8444d29d7c6eSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8445d29d7c6eSMatthew G. Knepley . a - The auxiliary field values at this point in space 8446d29d7c6eSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8447d29d7c6eSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8448d29d7c6eSMatthew G. Knepley . t - The current time 8449d29d7c6eSMatthew G. Knepley . x - The coordinates of this point 8450d29d7c6eSMatthew G. Knepley . numConstants - The number of constants 8451d29d7c6eSMatthew G. Knepley . constants - The value of each constant 8452d29d7c6eSMatthew G. Knepley - f - The value of the function at this point in space 8453d29d7c6eSMatthew G. Knepley 845473ff1848SBarry Smith Level: intermediate 845573ff1848SBarry Smith 8456bb7acecfSBarry Smith Note: 8457bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8458bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8459bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8460d29d7c6eSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8461d29d7c6eSMatthew G. Knepley 8462bb7acecfSBarry Smith Developer Notes: 8463bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8464bb7acecfSBarry Smith 8465bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8466bb7acecfSBarry Smith 84671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8468d29d7c6eSMatthew G. Knepley @*/ 8469a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec U, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec X) 8470d71ae5a4SJacob Faibussowitsch { 8471d29d7c6eSMatthew G. Knepley DM dmIn; 8472d29d7c6eSMatthew G. Knepley Vec localU, localX; 8473d29d7c6eSMatthew G. Knepley 8474d29d7c6eSMatthew G. Knepley PetscFunctionBegin; 8475d29d7c6eSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8476d29d7c6eSMatthew G. Knepley PetscCall(VecGetDM(U, &dmIn)); 8477d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dmIn, &localU)); 8478d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &localX)); 8479f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 848072fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalBegin(dmIn, U, mode, localU)); 848172fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalEnd(dmIn, U, mode, localU)); 8482d29d7c6eSMatthew G. Knepley PetscCall(DMProjectFieldLabelLocal(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX)); 8483d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 8484d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 8485d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &localX)); 8486d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dmIn, &localU)); 84873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8488d29d7c6eSMatthew G. Knepley } 8489d29d7c6eSMatthew G. Knepley 8490d29d7c6eSMatthew G. Knepley /*@C 8491ece3a9fcSMatthew G. Knepley DMProjectBdFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain boundary specified by the label. 8492ece3a9fcSMatthew G. Knepley 849320f4b53cSBarry Smith Not Collective 8494ece3a9fcSMatthew G. Knepley 8495ece3a9fcSMatthew G. Knepley Input Parameters: 8496bb7acecfSBarry Smith + dm - The `DM` 8497ece3a9fcSMatthew G. Knepley . time - The time 8498bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain boundary to output 8499ece3a9fcSMatthew G. Knepley . numIds - The number of label ids to use 8500ece3a9fcSMatthew G. Knepley . ids - The label ids to use for marking 8501bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 850220f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8503ece3a9fcSMatthew G. Knepley . localU - The input field vector 8504ece3a9fcSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8505ece3a9fcSMatthew G. Knepley - mode - The insertion mode for values 8506ece3a9fcSMatthew G. Knepley 8507ece3a9fcSMatthew G. Knepley Output Parameter: 8508ece3a9fcSMatthew G. Knepley . localX - The output vector 8509ece3a9fcSMatthew G. Knepley 851020f4b53cSBarry Smith Calling sequence of `funcs`: 8511ece3a9fcSMatthew G. Knepley + dim - The spatial dimension 8512ece3a9fcSMatthew G. Knepley . Nf - The number of input fields 8513ece3a9fcSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8514ece3a9fcSMatthew G. Knepley . uOff - The offset of each field in u[] 8515ece3a9fcSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8516ece3a9fcSMatthew G. Knepley . u - The field values at this point in space 8517ece3a9fcSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8518ece3a9fcSMatthew G. Knepley . u_x - The field derivatives at this point in space 8519ece3a9fcSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8520ece3a9fcSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8521ece3a9fcSMatthew G. Knepley . a - The auxiliary field values at this point in space 8522ece3a9fcSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8523ece3a9fcSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8524ece3a9fcSMatthew G. Knepley . t - The current time 8525ece3a9fcSMatthew G. Knepley . x - The coordinates of this point 8526ece3a9fcSMatthew G. Knepley . n - The face normal 8527ece3a9fcSMatthew G. Knepley . numConstants - The number of constants 8528ece3a9fcSMatthew G. Knepley . constants - The value of each constant 8529ece3a9fcSMatthew G. Knepley - f - The value of the function at this point in space 8530ece3a9fcSMatthew G. Knepley 853173ff1848SBarry Smith Level: intermediate 853273ff1848SBarry Smith 8533ece3a9fcSMatthew G. Knepley Note: 8534bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8535bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8536bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8537ece3a9fcSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8538ece3a9fcSMatthew G. Knepley 8539bb7acecfSBarry Smith Developer Notes: 8540bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8541bb7acecfSBarry Smith 8542bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8543bb7acecfSBarry Smith 85441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8545ece3a9fcSMatthew G. Knepley @*/ 8546a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectBdFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8547d71ae5a4SJacob Faibussowitsch { 8548ece3a9fcSMatthew G. Knepley PetscFunctionBegin; 8549ece3a9fcSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8550064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8551064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8552fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectbdfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX); 85533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8554ece3a9fcSMatthew G. Knepley } 8555ece3a9fcSMatthew G. Knepley 8556ece3a9fcSMatthew G. Knepley /*@C 85572716604bSToby Isaac DMComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 85582716604bSToby Isaac 855920f4b53cSBarry Smith Collective 8560bb7acecfSBarry Smith 85612716604bSToby Isaac Input Parameters: 8562bb7acecfSBarry Smith + dm - The `DM` 85630709b2feSToby Isaac . time - The time 85642716604bSToby Isaac . funcs - The functions to evaluate for each field component 85652716604bSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8566574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 85672716604bSToby Isaac 85682716604bSToby Isaac Output Parameter: 85692716604bSToby Isaac . diff - The diff ||u - u_h||_2 85702716604bSToby Isaac 85712716604bSToby Isaac Level: developer 85722716604bSToby Isaac 8573bb7acecfSBarry Smith Developer Notes: 8574bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8575bb7acecfSBarry Smith 8576bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8577bb7acecfSBarry Smith 85781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 85792716604bSToby Isaac @*/ 8580d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 8581d71ae5a4SJacob Faibussowitsch { 85822716604bSToby Isaac PetscFunctionBegin; 85832716604bSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8584b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8585fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2diff, time, funcs, ctxs, X, diff); 85863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 85872716604bSToby Isaac } 8588b698f381SToby Isaac 8589b698f381SToby Isaac /*@C 8590b698f381SToby Isaac DMComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h. 8591b698f381SToby Isaac 859220f4b53cSBarry Smith Collective 8593d083f849SBarry Smith 8594b698f381SToby Isaac Input Parameters: 8595bb7acecfSBarry Smith + dm - The `DM` 8596a4e35b19SJacob Faibussowitsch . time - The time 8597b698f381SToby Isaac . funcs - The gradient functions to evaluate for each field component 8598b698f381SToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8599574a98acSMatthew G. Knepley . X - The coefficient vector u_h, a global vector 8600b698f381SToby Isaac - n - The vector to project along 8601b698f381SToby Isaac 8602b698f381SToby Isaac Output Parameter: 8603b698f381SToby Isaac . diff - The diff ||(grad u - grad u_h) . n||_2 8604b698f381SToby Isaac 8605b698f381SToby Isaac Level: developer 8606b698f381SToby Isaac 8607bb7acecfSBarry Smith Developer Notes: 8608bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8609bb7acecfSBarry Smith 8610bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8611bb7acecfSBarry Smith 86121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMComputeL2FieldDiff()` 8613b698f381SToby Isaac @*/ 8614d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 8615d71ae5a4SJacob Faibussowitsch { 8616b698f381SToby Isaac PetscFunctionBegin; 8617b698f381SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8618b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8619fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2gradientdiff, time, funcs, ctxs, X, n, diff); 86203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8621b698f381SToby Isaac } 8622b698f381SToby Isaac 86232a16baeaSToby Isaac /*@C 86242a16baeaSToby Isaac DMComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components. 86252a16baeaSToby Isaac 862620f4b53cSBarry Smith Collective 8627d083f849SBarry Smith 86282a16baeaSToby Isaac Input Parameters: 8629bb7acecfSBarry Smith + dm - The `DM` 86302a16baeaSToby Isaac . time - The time 86312a16baeaSToby Isaac . funcs - The functions to evaluate for each field component 86322a16baeaSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8633574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 86342a16baeaSToby Isaac 86352a16baeaSToby Isaac Output Parameter: 86362a16baeaSToby Isaac . diff - The array of differences, ||u^f - u^f_h||_2 86372a16baeaSToby Isaac 86382a16baeaSToby Isaac Level: developer 86392a16baeaSToby Isaac 8640bb7acecfSBarry Smith Developer Notes: 8641bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8642bb7acecfSBarry Smith 8643bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8644bb7acecfSBarry Smith 864542747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2GradientDiff()` 86462a16baeaSToby Isaac @*/ 8647d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[]) 8648d71ae5a4SJacob Faibussowitsch { 86492a16baeaSToby Isaac PetscFunctionBegin; 86502a16baeaSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 86512a16baeaSToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8652fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2fielddiff, time, funcs, ctxs, X, diff); 86533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 86542a16baeaSToby Isaac } 86552a16baeaSToby Isaac 8656df0b854cSToby Isaac /*@C 8657bb7acecfSBarry Smith DMGetNeighbors - Gets an array containing the MPI ranks of all the processes neighbors 8658502a2867SDave May 8659502a2867SDave May Not Collective 8660502a2867SDave May 8661502a2867SDave May Input Parameter: 8662bb7acecfSBarry Smith . dm - The `DM` 8663502a2867SDave May 86640a19bb7dSprj- Output Parameters: 86650a19bb7dSprj- + nranks - the number of neighbours 86660a19bb7dSprj- - ranks - the neighbors ranks 8667502a2867SDave May 86689bdbcad8SBarry Smith Level: beginner 86699bdbcad8SBarry Smith 8670bb7acecfSBarry Smith Note: 8671bb7acecfSBarry Smith Do not free the array, it is freed when the `DM` is destroyed. 8672502a2867SDave May 86731cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDAGetNeighbors()`, `PetscSFGetRootRanks()` 8674502a2867SDave May @*/ 8675d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNeighbors(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[]) 8676d71ae5a4SJacob Faibussowitsch { 8677502a2867SDave May PetscFunctionBegin; 8678502a2867SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8679fa1e479aSStefano Zampini PetscUseTypeMethod(dm, getneighbors, nranks, ranks); 86803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8681502a2867SDave May } 8682502a2867SDave May 8683531c7667SBarry Smith #include <petsc/private/matimpl.h> /* Needed because of coloring->ctype below */ 8684531c7667SBarry Smith 8685531c7667SBarry Smith /* 8686531c7667SBarry Smith Converts the input vector to a ghosted vector and then calls the standard coloring code. 86872b6f951bSStefano Zampini This must be a different function because it requires DM which is not defined in the Mat library 8688531c7667SBarry Smith */ 868966976f2fSJacob Faibussowitsch static PetscErrorCode MatFDColoringApply_AIJDM(Mat J, MatFDColoring coloring, Vec x1, void *sctx) 8690d71ae5a4SJacob Faibussowitsch { 8691531c7667SBarry Smith PetscFunctionBegin; 8692531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8693531c7667SBarry Smith Vec x1local; 8694531c7667SBarry Smith DM dm; 86959566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 86967a8be351SBarry Smith PetscCheck(dm, PetscObjectComm((PetscObject)J), PETSC_ERR_ARG_INCOMP, "IS_COLORING_LOCAL requires a DM"); 86979566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &x1local)); 86989566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, x1, INSERT_VALUES, x1local)); 86999566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, x1, INSERT_VALUES, x1local)); 8700531c7667SBarry Smith x1 = x1local; 8701531c7667SBarry Smith } 87029566063dSJacob Faibussowitsch PetscCall(MatFDColoringApply_AIJ(J, coloring, x1, sctx)); 8703531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8704531c7667SBarry Smith DM dm; 87059566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 87069566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &x1)); 8707531c7667SBarry Smith } 87083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8709531c7667SBarry Smith } 8710531c7667SBarry Smith 8711531c7667SBarry Smith /*@ 8712bb7acecfSBarry Smith MatFDColoringUseDM - allows a `MatFDColoring` object to use the `DM` associated with the matrix to compute a `IS_COLORING_LOCAL` coloring 8713531c7667SBarry Smith 8714a4e35b19SJacob Faibussowitsch Input Parameters: 8715a4e35b19SJacob Faibussowitsch + coloring - The matrix to get the `DM` from 8716a4e35b19SJacob Faibussowitsch - fdcoloring - the `MatFDColoring` object 8717531c7667SBarry Smith 87189bdbcad8SBarry Smith Level: advanced 87199bdbcad8SBarry Smith 872073ff1848SBarry Smith Developer Note: 872173ff1848SBarry Smith This routine exists because the PETSc `Mat` library does not know about the `DM` objects 8722531c7667SBarry Smith 87231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatFDColoring`, `MatFDColoringCreate()`, `ISColoringType` 8724531c7667SBarry Smith @*/ 8725d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringUseDM(Mat coloring, MatFDColoring fdcoloring) 8726d71ae5a4SJacob Faibussowitsch { 8727531c7667SBarry Smith PetscFunctionBegin; 8728531c7667SBarry Smith coloring->ops->fdcoloringapply = MatFDColoringApply_AIJDM; 87293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8730531c7667SBarry Smith } 87318320bc6fSPatrick Sanan 87328320bc6fSPatrick Sanan /*@ 8733bb7acecfSBarry Smith DMGetCompatibility - determine if two `DM`s are compatible 87348320bc6fSPatrick Sanan 87358320bc6fSPatrick Sanan Collective 87368320bc6fSPatrick Sanan 87378320bc6fSPatrick Sanan Input Parameters: 8738bb7acecfSBarry Smith + dm1 - the first `DM` 8739bb7acecfSBarry Smith - dm2 - the second `DM` 87408320bc6fSPatrick Sanan 87418320bc6fSPatrick Sanan Output Parameters: 8742bb7acecfSBarry Smith + compatible - whether or not the two `DM`s are compatible 8743bb7acecfSBarry Smith - set - whether or not the compatible value was actually determined and set 87448320bc6fSPatrick Sanan 874520f4b53cSBarry Smith Level: advanced 874620f4b53cSBarry Smith 87478320bc6fSPatrick Sanan Notes: 8748bb7acecfSBarry Smith Two `DM`s are deemed compatible if they represent the same parallel decomposition 87493d862458SPatrick Sanan of the same topology. This implies that the section (field data) on one 87508320bc6fSPatrick Sanan "makes sense" with respect to the topology and parallel decomposition of the other. 8751bb7acecfSBarry Smith Loosely speaking, compatible `DM`s represent the same domain and parallel 87523d862458SPatrick Sanan decomposition, but hold different data. 87538320bc6fSPatrick Sanan 87548320bc6fSPatrick Sanan Typically, one would confirm compatibility if intending to simultaneously iterate 8755bb7acecfSBarry Smith over a pair of vectors obtained from different `DM`s. 87568320bc6fSPatrick Sanan 8757bb7acecfSBarry Smith For example, two `DMDA` objects are compatible if they have the same local 87588320bc6fSPatrick Sanan and global sizes and the same stencil width. They can have different numbers 87598320bc6fSPatrick Sanan of degrees of freedom per node. Thus, one could use the node numbering from 8760bb7acecfSBarry Smith either `DM` in bounds for a loop over vectors derived from either `DM`. 87618320bc6fSPatrick Sanan 8762bb7acecfSBarry Smith Consider the operation of summing data living on a 2-dof `DMDA` to data living 8763bb7acecfSBarry Smith on a 1-dof `DMDA`, which should be compatible, as in the following snippet. 87648320bc6fSPatrick Sanan .vb 87658320bc6fSPatrick Sanan ... 87669566063dSJacob Faibussowitsch PetscCall(DMGetCompatibility(da1,da2,&compatible,&set)); 87678320bc6fSPatrick Sanan if (set && compatible) { 87689566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da1,vec1,&arr1)); 87699566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da2,vec2,&arr2)); 87709566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da1,&x,&y,NULL,&m,&n,NULL)); 87718320bc6fSPatrick Sanan for (j=y; j<y+n; ++j) { 87728320bc6fSPatrick Sanan for (i=x; i<x+m, ++i) { 87738320bc6fSPatrick Sanan arr1[j][i][0] = arr2[j][i][0] + arr2[j][i][1]; 87748320bc6fSPatrick Sanan } 87758320bc6fSPatrick Sanan } 87769566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da1,vec1,&arr1)); 87779566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da2,vec2,&arr2)); 87788320bc6fSPatrick Sanan } else { 87798320bc6fSPatrick Sanan SETERRQ(PetscObjectComm((PetscObject)da1,PETSC_ERR_ARG_INCOMP,"DMDA objects incompatible"); 87808320bc6fSPatrick Sanan } 87818320bc6fSPatrick Sanan ... 87828320bc6fSPatrick Sanan .ve 87838320bc6fSPatrick Sanan 8784bb7acecfSBarry Smith Checking compatibility might be expensive for a given implementation of `DM`, 87858320bc6fSPatrick Sanan or might be impossible to unambiguously confirm or deny. For this reason, 87868320bc6fSPatrick Sanan this function may decline to determine compatibility, and hence users should 87878320bc6fSPatrick Sanan always check the "set" output parameter. 87888320bc6fSPatrick Sanan 8789bb7acecfSBarry Smith A `DM` is always compatible with itself. 87908320bc6fSPatrick Sanan 8791bb7acecfSBarry Smith In the current implementation, `DM`s which live on "unequal" communicators 87928320bc6fSPatrick Sanan (MPI_UNEQUAL in the terminology of MPI_Comm_compare()) are always deemed 87938320bc6fSPatrick Sanan incompatible. 87948320bc6fSPatrick Sanan 87958320bc6fSPatrick Sanan This function is labeled "Collective," as information about all subdomains 8796bb7acecfSBarry Smith is required on each rank. However, in `DM` implementations which store all this 87978320bc6fSPatrick Sanan information locally, this function may be merely "Logically Collective". 87988320bc6fSPatrick Sanan 879973ff1848SBarry Smith Developer Note: 8800bb7acecfSBarry Smith Compatibility is assumed to be a symmetric concept; `DM` A is compatible with `DM` B 88013d862458SPatrick Sanan iff B is compatible with A. Thus, this function checks the implementations 8802a5bc1bf3SBarry Smith of both dm and dmc (if they are of different types), attempting to determine 8803bb7acecfSBarry Smith compatibility. It is left to `DM` implementers to ensure that symmetry is 88048320bc6fSPatrick Sanan preserved. The simplest way to do this is, when implementing type-specific 88053d862458SPatrick Sanan logic for this function, is to check for existing logic in the implementation 8806bb7acecfSBarry Smith of other `DM` types and let *set = PETSC_FALSE if found. 88078320bc6fSPatrick Sanan 88081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreateCompatibleDMDA()`, `DMStagCreateCompatibleDMStag()` 88098320bc6fSPatrick Sanan @*/ 8810d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCompatibility(DM dm1, DM dm2, PetscBool *compatible, PetscBool *set) 8811d71ae5a4SJacob Faibussowitsch { 88128320bc6fSPatrick Sanan PetscMPIInt compareResult; 88138320bc6fSPatrick Sanan DMType type, type2; 88148320bc6fSPatrick Sanan PetscBool sameType; 88158320bc6fSPatrick Sanan 88168320bc6fSPatrick Sanan PetscFunctionBegin; 8817a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dm1, DM_CLASSID, 1); 88188320bc6fSPatrick Sanan PetscValidHeaderSpecific(dm2, DM_CLASSID, 2); 88198320bc6fSPatrick Sanan 88208320bc6fSPatrick Sanan /* Declare a DM compatible with itself */ 8821a5bc1bf3SBarry Smith if (dm1 == dm2) { 88228320bc6fSPatrick Sanan *set = PETSC_TRUE; 88238320bc6fSPatrick Sanan *compatible = PETSC_TRUE; 88243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 88258320bc6fSPatrick Sanan } 88268320bc6fSPatrick Sanan 88278320bc6fSPatrick Sanan /* Declare a DM incompatible with a DM that lives on an "unequal" 88288320bc6fSPatrick Sanan communicator. Note that this does not preclude compatibility with 88298320bc6fSPatrick Sanan DMs living on "congruent" or "similar" communicators, but this must be 88308320bc6fSPatrick Sanan determined by the implementation-specific logic */ 88319566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)dm1), PetscObjectComm((PetscObject)dm2), &compareResult)); 88328320bc6fSPatrick Sanan if (compareResult == MPI_UNEQUAL) { 88338320bc6fSPatrick Sanan *set = PETSC_TRUE; 88348320bc6fSPatrick Sanan *compatible = PETSC_FALSE; 88353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 88368320bc6fSPatrick Sanan } 88378320bc6fSPatrick Sanan 88388320bc6fSPatrick Sanan /* Pass to the implementation-specific routine, if one exists. */ 8839a5bc1bf3SBarry Smith if (dm1->ops->getcompatibility) { 8840dbbe0bcdSBarry Smith PetscUseTypeMethod(dm1, getcompatibility, dm2, compatible, set); 88413ba16761SJacob Faibussowitsch if (*set) PetscFunctionReturn(PETSC_SUCCESS); 88428320bc6fSPatrick Sanan } 88438320bc6fSPatrick Sanan 8844a5bc1bf3SBarry Smith /* If dm1 and dm2 are of different types, then attempt to check compatibility 88458320bc6fSPatrick Sanan with an implementation of this function from dm2 */ 88469566063dSJacob Faibussowitsch PetscCall(DMGetType(dm1, &type)); 88479566063dSJacob Faibussowitsch PetscCall(DMGetType(dm2, &type2)); 88489566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(type, type2, &sameType)); 88498320bc6fSPatrick Sanan if (!sameType && dm2->ops->getcompatibility) { 8850dbbe0bcdSBarry Smith PetscUseTypeMethod(dm2, getcompatibility, dm1, compatible, set); /* Note argument order */ 88518320bc6fSPatrick Sanan } else { 88528320bc6fSPatrick Sanan *set = PETSC_FALSE; 88538320bc6fSPatrick Sanan } 88543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 88558320bc6fSPatrick Sanan } 8856c0f0dcc3SMatthew G. Knepley 8857c0f0dcc3SMatthew G. Knepley /*@C 8858bb7acecfSBarry Smith DMMonitorSet - Sets an additional monitor function that is to be used after a solve to monitor discretization performance. 8859c0f0dcc3SMatthew G. Knepley 886020f4b53cSBarry Smith Logically Collective 8861c0f0dcc3SMatthew G. Knepley 8862c0f0dcc3SMatthew G. Knepley Input Parameters: 886360225df5SJacob Faibussowitsch + dm - the `DM` 8864c0f0dcc3SMatthew G. Knepley . f - the monitor function 886520f4b53cSBarry Smith . mctx - [optional] user-defined context for private data for the monitor routine (use `NULL` if no context is desired) 886620f4b53cSBarry Smith - monitordestroy - [optional] routine that frees monitor context (may be `NULL`) 8867c0f0dcc3SMatthew G. Knepley 886820f4b53cSBarry Smith Options Database Key: 886960225df5SJacob Faibussowitsch . -dm_monitor_cancel - cancels all monitors that have been hardwired into a code by calls to `DMMonitorSet()`, but 8870c0f0dcc3SMatthew G. Knepley does not cancel those set via the options database. 8871c0f0dcc3SMatthew G. Knepley 88729bdbcad8SBarry Smith Level: intermediate 88739bdbcad8SBarry Smith 8874bb7acecfSBarry Smith Note: 8875c0f0dcc3SMatthew G. Knepley Several different monitoring routines may be set by calling 8876bb7acecfSBarry Smith `DMMonitorSet()` multiple times or with `DMMonitorSetFromOptions()`; all will be called in the 8877c0f0dcc3SMatthew G. Knepley order in which they were set. 8878c0f0dcc3SMatthew G. Knepley 887973ff1848SBarry Smith Fortran Note: 8880bb7acecfSBarry Smith Only a single monitor function can be set for each `DM` object 8881bb7acecfSBarry Smith 888273ff1848SBarry Smith Developer Note: 8883bb7acecfSBarry Smith This API has a generic name but seems specific to a very particular aspect of the use of `DM` 8884c0f0dcc3SMatthew G. Knepley 88851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorCancel()`, `DMMonitorSetFromOptions()`, `DMMonitor()` 8886c0f0dcc3SMatthew G. Knepley @*/ 8887d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSet(DM dm, PetscErrorCode (*f)(DM, void *), void *mctx, PetscErrorCode (*monitordestroy)(void **)) 8888d71ae5a4SJacob Faibussowitsch { 8889c0f0dcc3SMatthew G. Knepley PetscInt m; 8890c0f0dcc3SMatthew G. Knepley 8891c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8892c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8893c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 8894c0f0dcc3SMatthew G. Knepley PetscBool identical; 8895c0f0dcc3SMatthew G. Knepley 88969566063dSJacob Faibussowitsch PetscCall(PetscMonitorCompare((PetscErrorCode(*)(void))f, mctx, monitordestroy, (PetscErrorCode(*)(void))dm->monitor[m], dm->monitorcontext[m], dm->monitordestroy[m], &identical)); 88973ba16761SJacob Faibussowitsch if (identical) PetscFunctionReturn(PETSC_SUCCESS); 8898c0f0dcc3SMatthew G. Knepley } 88997a8be351SBarry Smith PetscCheck(dm->numbermonitors < MAXDMMONITORS, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many monitors set"); 8900c0f0dcc3SMatthew G. Knepley dm->monitor[dm->numbermonitors] = f; 8901c0f0dcc3SMatthew G. Knepley dm->monitordestroy[dm->numbermonitors] = monitordestroy; 8902c0f0dcc3SMatthew G. Knepley dm->monitorcontext[dm->numbermonitors++] = (void *)mctx; 89033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8904c0f0dcc3SMatthew G. Knepley } 8905c0f0dcc3SMatthew G. Knepley 8906c0f0dcc3SMatthew G. Knepley /*@ 8907bb7acecfSBarry Smith DMMonitorCancel - Clears all the monitor functions for a `DM` object. 8908c0f0dcc3SMatthew G. Knepley 890920f4b53cSBarry Smith Logically Collective 8910c0f0dcc3SMatthew G. Knepley 8911c0f0dcc3SMatthew G. Knepley Input Parameter: 8912c0f0dcc3SMatthew G. Knepley . dm - the DM 8913c0f0dcc3SMatthew G. Knepley 8914c0f0dcc3SMatthew G. Knepley Options Database Key: 8915c0f0dcc3SMatthew G. Knepley . -dm_monitor_cancel - cancels all monitors that have been hardwired 8916bb7acecfSBarry Smith into a code by calls to `DMonitorSet()`, but does not cancel those 8917c0f0dcc3SMatthew G. Knepley set via the options database 8918c0f0dcc3SMatthew G. Knepley 89199bdbcad8SBarry Smith Level: intermediate 89209bdbcad8SBarry Smith 8921bb7acecfSBarry Smith Note: 8922bb7acecfSBarry Smith There is no way to clear one specific monitor from a `DM` object. 8923c0f0dcc3SMatthew G. Knepley 89241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`, `DMMonitor()` 8925c0f0dcc3SMatthew G. Knepley @*/ 8926d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorCancel(DM dm) 8927d71ae5a4SJacob Faibussowitsch { 8928c0f0dcc3SMatthew G. Knepley PetscInt m; 8929c0f0dcc3SMatthew G. Knepley 8930c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8931c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8932c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 89339566063dSJacob Faibussowitsch if (dm->monitordestroy[m]) PetscCall((*dm->monitordestroy[m])(&dm->monitorcontext[m])); 8934c0f0dcc3SMatthew G. Knepley } 8935c0f0dcc3SMatthew G. Knepley dm->numbermonitors = 0; 89363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8937c0f0dcc3SMatthew G. Knepley } 8938c0f0dcc3SMatthew G. Knepley 8939c0f0dcc3SMatthew G. Knepley /*@C 8940c0f0dcc3SMatthew G. Knepley DMMonitorSetFromOptions - Sets a monitor function and viewer appropriate for the type indicated by the user 8941c0f0dcc3SMatthew G. Knepley 894220f4b53cSBarry Smith Collective 8943c0f0dcc3SMatthew G. Knepley 8944c0f0dcc3SMatthew G. Knepley Input Parameters: 8945bb7acecfSBarry Smith + dm - `DM` object you wish to monitor 8946c0f0dcc3SMatthew G. Knepley . name - the monitor type one is seeking 8947c0f0dcc3SMatthew G. Knepley . help - message indicating what monitoring is done 8948c0f0dcc3SMatthew G. Knepley . manual - manual page for the monitor 8949c0f0dcc3SMatthew G. Knepley . monitor - the monitor function 8950bb7acecfSBarry Smith - monitorsetup - a function that is called once ONLY if the user selected this monitor that may set additional features of the `DM` or `PetscViewer` objects 8951c0f0dcc3SMatthew G. Knepley 8952c0f0dcc3SMatthew G. Knepley Output Parameter: 8953c0f0dcc3SMatthew G. Knepley . flg - Flag set if the monitor was created 8954c0f0dcc3SMatthew G. Knepley 8955c0f0dcc3SMatthew G. Knepley Level: developer 8956c0f0dcc3SMatthew G. Knepley 8957648c30bcSBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscOptionsCreateViewer()`, `PetscOptionsGetReal()`, `PetscOptionsHasName()`, `PetscOptionsGetString()`, 8958db781477SPatrick Sanan `PetscOptionsGetIntArray()`, `PetscOptionsGetRealArray()`, `PetscOptionsBool()` 895960225df5SJacob Faibussowitsch `PetscOptionsInt()`, `PetscOptionsString()`, `PetscOptionsReal()`, 8960db781477SPatrick Sanan `PetscOptionsName()`, `PetscOptionsBegin()`, `PetscOptionsEnd()`, `PetscOptionsHeadBegin()`, 8961c2e3fba1SPatrick Sanan `PetscOptionsStringArray()`, `PetscOptionsRealArray()`, `PetscOptionsScalar()`, 8962db781477SPatrick Sanan `PetscOptionsBoolGroupBegin()`, `PetscOptionsBoolGroup()`, `PetscOptionsBoolGroupEnd()`, 8963bb7acecfSBarry Smith `PetscOptionsFList()`, `PetscOptionsEList()`, `DMMonitor()`, `DMMonitorSet()` 8964c0f0dcc3SMatthew G. Knepley @*/ 8965d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSetFromOptions(DM dm, const char name[], const char help[], const char manual[], PetscErrorCode (*monitor)(DM, void *), PetscErrorCode (*monitorsetup)(DM, PetscViewerAndFormat *), PetscBool *flg) 8966d71ae5a4SJacob Faibussowitsch { 8967c0f0dcc3SMatthew G. Knepley PetscViewer viewer; 8968c0f0dcc3SMatthew G. Knepley PetscViewerFormat format; 8969c0f0dcc3SMatthew G. Knepley 8970c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8971c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8972648c30bcSBarry Smith PetscCall(PetscOptionsCreateViewer(PetscObjectComm((PetscObject)dm), ((PetscObject)dm)->options, ((PetscObject)dm)->prefix, name, &viewer, &format, flg)); 8973c0f0dcc3SMatthew G. Knepley if (*flg) { 8974c0f0dcc3SMatthew G. Knepley PetscViewerAndFormat *vf; 8975c0f0dcc3SMatthew G. Knepley 89769566063dSJacob Faibussowitsch PetscCall(PetscViewerAndFormatCreate(viewer, format, &vf)); 8977648c30bcSBarry Smith PetscCall(PetscViewerDestroy(&viewer)); 89789566063dSJacob Faibussowitsch if (monitorsetup) PetscCall((*monitorsetup)(dm, vf)); 89799566063dSJacob Faibussowitsch PetscCall(DMMonitorSet(dm, (PetscErrorCode(*)(DM, void *))monitor, vf, (PetscErrorCode(*)(void **))PetscViewerAndFormatDestroy)); 8980c0f0dcc3SMatthew G. Knepley } 89813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8982c0f0dcc3SMatthew G. Knepley } 8983c0f0dcc3SMatthew G. Knepley 8984c0f0dcc3SMatthew G. Knepley /*@ 8985c0f0dcc3SMatthew G. Knepley DMMonitor - runs the user provided monitor routines, if they exist 8986c0f0dcc3SMatthew G. Knepley 898720f4b53cSBarry Smith Collective 8988c0f0dcc3SMatthew G. Knepley 89892fe279fdSBarry Smith Input Parameter: 8990bb7acecfSBarry Smith . dm - The `DM` 8991c0f0dcc3SMatthew G. Knepley 8992c0f0dcc3SMatthew G. Knepley Level: developer 8993c0f0dcc3SMatthew G. Knepley 899473ff1848SBarry Smith Developer Note: 8995a4e35b19SJacob Faibussowitsch Note should indicate when during the life of the `DM` the monitor is run. It appears to be 8996a4e35b19SJacob Faibussowitsch related to the discretization process seems rather specialized since some `DM` have no 8997a4e35b19SJacob Faibussowitsch concept of discretization. 8998bb7acecfSBarry Smith 89991cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()` 9000c0f0dcc3SMatthew G. Knepley @*/ 9001d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitor(DM dm) 9002d71ae5a4SJacob Faibussowitsch { 9003c0f0dcc3SMatthew G. Knepley PetscInt m; 9004c0f0dcc3SMatthew G. Knepley 9005c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 90063ba16761SJacob Faibussowitsch if (!dm) PetscFunctionReturn(PETSC_SUCCESS); 9007c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 900848a46eb9SPierre Jolivet for (m = 0; m < dm->numbermonitors; ++m) PetscCall((*dm->monitor[m])(dm, dm->monitorcontext[m])); 90093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9010c0f0dcc3SMatthew G. Knepley } 90112e4af2aeSMatthew G. Knepley 90122e4af2aeSMatthew G. Knepley /*@ 9013bb7acecfSBarry Smith DMComputeError - Computes the error assuming the user has provided the exact solution functions 90142e4af2aeSMatthew G. Knepley 901520f4b53cSBarry Smith Collective 90162e4af2aeSMatthew G. Knepley 90172e4af2aeSMatthew G. Knepley Input Parameters: 9018bb7acecfSBarry Smith + dm - The `DM` 90196b867d5aSJose E. Roman - sol - The solution vector 90202e4af2aeSMatthew G. Knepley 90216b867d5aSJose E. Roman Input/Output Parameter: 902220f4b53cSBarry Smith . errors - An array of length Nf, the number of fields, or `NULL` for no output; on output 90236b867d5aSJose E. Roman contains the error in each field 90246b867d5aSJose E. Roman 90256b867d5aSJose E. Roman Output Parameter: 902620f4b53cSBarry Smith . errorVec - A vector to hold the cellwise error (may be `NULL`) 902720f4b53cSBarry Smith 902820f4b53cSBarry Smith Level: developer 90292e4af2aeSMatthew G. Knepley 9030bb7acecfSBarry Smith Note: 9031bb7acecfSBarry Smith The exact solutions come from the `PetscDS` object, and the time comes from `DMGetOutputSequenceNumber()`. 90322e4af2aeSMatthew G. Knepley 90331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMGetRegionNumDS()`, `PetscDSGetExactSolution()`, `DMGetOutputSequenceNumber()` 90342e4af2aeSMatthew G. Knepley @*/ 9035d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeError(DM dm, Vec sol, PetscReal errors[], Vec *errorVec) 9036d71ae5a4SJacob Faibussowitsch { 90372e4af2aeSMatthew G. Knepley PetscErrorCode (**exactSol)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *); 90382e4af2aeSMatthew G. Knepley void **ctxs; 90392e4af2aeSMatthew G. Knepley PetscReal time; 90402e4af2aeSMatthew G. Knepley PetscInt Nf, f, Nds, s; 90412e4af2aeSMatthew G. Knepley 90422e4af2aeSMatthew G. Knepley PetscFunctionBegin; 90439566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 90449566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &exactSol, Nf, &ctxs)); 90459566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 90462e4af2aeSMatthew G. Knepley for (s = 0; s < Nds; ++s) { 90472e4af2aeSMatthew G. Knepley PetscDS ds; 90482e4af2aeSMatthew G. Knepley DMLabel label; 90492e4af2aeSMatthew G. Knepley IS fieldIS; 90502e4af2aeSMatthew G. Knepley const PetscInt *fields; 90512e4af2aeSMatthew G. Knepley PetscInt dsNf; 90522e4af2aeSMatthew G. Knepley 905307218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 90549566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 90559566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISGetIndices(fieldIS, &fields)); 90562e4af2aeSMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 90572e4af2aeSMatthew G. Knepley const PetscInt field = fields[f]; 90589566063dSJacob Faibussowitsch PetscCall(PetscDSGetExactSolution(ds, field, &exactSol[field], &ctxs[field])); 90592e4af2aeSMatthew G. Knepley } 90609566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISRestoreIndices(fieldIS, &fields)); 90612e4af2aeSMatthew G. Knepley } 9062ad540459SPierre Jolivet for (f = 0; f < Nf; ++f) PetscCheck(exactSol[f], PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "DS must contain exact solution functions in order to calculate error, missing for field %" PetscInt_FMT, f); 90639566063dSJacob Faibussowitsch PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time)); 90649566063dSJacob Faibussowitsch if (errors) PetscCall(DMComputeL2FieldDiff(dm, time, exactSol, ctxs, sol, errors)); 90652e4af2aeSMatthew G. Knepley if (errorVec) { 90662e4af2aeSMatthew G. Knepley DM edm; 90672e4af2aeSMatthew G. Knepley DMPolytopeType ct; 90682e4af2aeSMatthew G. Knepley PetscBool simplex; 90692e4af2aeSMatthew G. Knepley PetscInt dim, cStart, Nf; 90702e4af2aeSMatthew G. Knepley 90719566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &edm)); 90729566063dSJacob Faibussowitsch PetscCall(DMGetDimension(edm, &dim)); 90739566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 90749566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 90752e4af2aeSMatthew G. Knepley simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE; 90769566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 90772e4af2aeSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 90782e4af2aeSMatthew G. Knepley PetscFE fe, efe; 90792e4af2aeSMatthew G. Knepley PetscQuadrature q; 90802e4af2aeSMatthew G. Knepley const char *name; 90812e4af2aeSMatthew G. Knepley 90829566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe)); 90839566063dSJacob Faibussowitsch PetscCall(PetscFECreateLagrange(PETSC_COMM_SELF, dim, Nf, simplex, 0, PETSC_DETERMINE, &efe)); 90849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)fe, &name)); 90859566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)efe, name)); 90869566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 90879566063dSJacob Faibussowitsch PetscCall(PetscFESetQuadrature(efe, q)); 90889566063dSJacob Faibussowitsch PetscCall(DMSetField(edm, f, NULL, (PetscObject)efe)); 90899566063dSJacob Faibussowitsch PetscCall(PetscFEDestroy(&efe)); 90902e4af2aeSMatthew G. Knepley } 90919566063dSJacob Faibussowitsch PetscCall(DMCreateDS(edm)); 90922e4af2aeSMatthew G. Knepley 90939566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(edm, errorVec)); 90949566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*errorVec, "Error")); 90959566063dSJacob Faibussowitsch PetscCall(DMPlexComputeL2DiffVec(dm, time, exactSol, ctxs, sol, *errorVec)); 90969566063dSJacob Faibussowitsch PetscCall(DMDestroy(&edm)); 90972e4af2aeSMatthew G. Knepley } 90989566063dSJacob Faibussowitsch PetscCall(PetscFree2(exactSol, ctxs)); 90993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91002e4af2aeSMatthew G. Knepley } 91019a2a23afSMatthew G. Knepley 91029a2a23afSMatthew G. Knepley /*@ 9103bb7acecfSBarry Smith DMGetNumAuxiliaryVec - Get the number of auxiliary vectors associated with this `DM` 91049a2a23afSMatthew G. Knepley 910520f4b53cSBarry Smith Not Collective 91069a2a23afSMatthew G. Knepley 91079a2a23afSMatthew G. Knepley Input Parameter: 9108bb7acecfSBarry Smith . dm - The `DM` 91099a2a23afSMatthew G. Knepley 91109a2a23afSMatthew G. Knepley Output Parameter: 9111a5b23f4aSJose E. Roman . numAux - The number of auxiliary data vectors 91129a2a23afSMatthew G. Knepley 91139a2a23afSMatthew G. Knepley Level: advanced 91149a2a23afSMatthew G. Knepley 9115e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMGetAuxiliaryVec()` 91169a2a23afSMatthew G. Knepley @*/ 9117d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumAuxiliaryVec(DM dm, PetscInt *numAux) 9118d71ae5a4SJacob Faibussowitsch { 91199a2a23afSMatthew G. Knepley PetscFunctionBegin; 91209a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 91219566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetSize(dm->auxData, numAux)); 91223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91239a2a23afSMatthew G. Knepley } 91249a2a23afSMatthew G. Knepley 91259a2a23afSMatthew G. Knepley /*@ 9126ac17215fSMatthew G. Knepley DMGetAuxiliaryVec - Get the auxiliary vector for region specified by the given label and value, and equation part 91279a2a23afSMatthew G. Knepley 912820f4b53cSBarry Smith Not Collective 91299a2a23afSMatthew G. Knepley 91309a2a23afSMatthew G. Knepley Input Parameters: 9131bb7acecfSBarry Smith + dm - The `DM` 9132bb7acecfSBarry Smith . label - The `DMLabel` 9133ac17215fSMatthew G. Knepley . value - The label value indicating the region 9134ac17215fSMatthew G. Knepley - part - The equation part, or 0 if unused 91359a2a23afSMatthew G. Knepley 91369a2a23afSMatthew G. Knepley Output Parameter: 9137bb7acecfSBarry Smith . aux - The `Vec` holding auxiliary field data 91389a2a23afSMatthew G. Knepley 91399bdbcad8SBarry Smith Level: advanced 91409bdbcad8SBarry Smith 9141bb7acecfSBarry Smith Note: 9142bb7acecfSBarry Smith If no auxiliary vector is found for this (label, value), (NULL, 0, 0) is checked as well. 914304c51a94SMatthew G. Knepley 9144e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryLabels()` 91459a2a23afSMatthew G. Knepley @*/ 9146d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec *aux) 9147d71ae5a4SJacob Faibussowitsch { 9148ac17215fSMatthew G. Knepley PetscHashAuxKey key, wild = {NULL, 0, 0}; 914904c51a94SMatthew G. Knepley PetscBool has; 91509a2a23afSMatthew G. Knepley 91519a2a23afSMatthew G. Knepley PetscFunctionBegin; 91529a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 91539a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 91549a2a23afSMatthew G. Knepley key.label = label; 91559a2a23afSMatthew G. Knepley key.value = value; 9156ac17215fSMatthew G. Knepley key.part = part; 91579566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxHas(dm->auxData, key, &has)); 91589566063dSJacob Faibussowitsch if (has) PetscCall(PetscHMapAuxGet(dm->auxData, key, aux)); 91599566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxGet(dm->auxData, wild, aux)); 91603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91619a2a23afSMatthew G. Knepley } 91629a2a23afSMatthew G. Knepley 91639a2a23afSMatthew G. Knepley /*@ 9164bb7acecfSBarry Smith DMSetAuxiliaryVec - Set an auxiliary vector for region specified by the given label and value, and equation part 91659a2a23afSMatthew G. Knepley 916620f4b53cSBarry Smith Not Collective because auxiliary vectors are not parallel 91679a2a23afSMatthew G. Knepley 91689a2a23afSMatthew G. Knepley Input Parameters: 9169bb7acecfSBarry Smith + dm - The `DM` 9170bb7acecfSBarry Smith . label - The `DMLabel` 91719a2a23afSMatthew G. Knepley . value - The label value indicating the region 9172ac17215fSMatthew G. Knepley . part - The equation part, or 0 if unused 9173bb7acecfSBarry Smith - aux - The `Vec` holding auxiliary field data 91749a2a23afSMatthew G. Knepley 91759a2a23afSMatthew G. Knepley Level: advanced 91769a2a23afSMatthew G. Knepley 9177e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMCopyAuxiliaryVec()` 91789a2a23afSMatthew G. Knepley @*/ 9179d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec aux) 9180d71ae5a4SJacob Faibussowitsch { 91819a2a23afSMatthew G. Knepley Vec old; 91829a2a23afSMatthew G. Knepley PetscHashAuxKey key; 91839a2a23afSMatthew G. Knepley 91849a2a23afSMatthew G. Knepley PetscFunctionBegin; 91859a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 91869a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 91879a2a23afSMatthew G. Knepley key.label = label; 91889a2a23afSMatthew G. Knepley key.value = value; 9189ac17215fSMatthew G. Knepley key.part = part; 91909566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGet(dm->auxData, key, &old)); 91919566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)aux)); 91929566063dSJacob Faibussowitsch if (!aux) PetscCall(PetscHMapAuxDel(dm->auxData, key)); 91939566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxSet(dm->auxData, key, aux)); 9194d705d0eaSStefano Zampini PetscCall(VecDestroy(&old)); 91953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91969a2a23afSMatthew G. Knepley } 91979a2a23afSMatthew G. Knepley 9198cc4c1da9SBarry Smith /*@ 9199bb7acecfSBarry Smith DMGetAuxiliaryLabels - Get the labels, values, and parts for all auxiliary vectors in this `DM` 92009a2a23afSMatthew G. Knepley 920120f4b53cSBarry Smith Not Collective 92029a2a23afSMatthew G. Knepley 92039a2a23afSMatthew G. Knepley Input Parameter: 9204bb7acecfSBarry Smith . dm - The `DM` 92059a2a23afSMatthew G. Knepley 92069a2a23afSMatthew G. Knepley Output Parameters: 9207bb7acecfSBarry Smith + labels - The `DMLabel`s for each `Vec` 9208bb7acecfSBarry Smith . values - The label values for each `Vec` 9209bb7acecfSBarry Smith - parts - The equation parts for each `Vec` 92109a2a23afSMatthew G. Knepley 92119bdbcad8SBarry Smith Level: advanced 92129bdbcad8SBarry Smith 9213bb7acecfSBarry Smith Note: 9214bb7acecfSBarry Smith The arrays passed in must be at least as large as `DMGetNumAuxiliaryVec()`. 92159a2a23afSMatthew G. Knepley 9216e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMCopyAuxiliaryVec()` 92179a2a23afSMatthew G. Knepley @*/ 9218d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryLabels(DM dm, DMLabel labels[], PetscInt values[], PetscInt parts[]) 9219d71ae5a4SJacob Faibussowitsch { 92209a2a23afSMatthew G. Knepley PetscHashAuxKey *keys; 92219a2a23afSMatthew G. Knepley PetscInt n, i, off = 0; 92229a2a23afSMatthew G. Knepley 92239a2a23afSMatthew G. Knepley PetscFunctionBegin; 92249a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 92254f572ea9SToby Isaac PetscAssertPointer(labels, 2); 92264f572ea9SToby Isaac PetscAssertPointer(values, 3); 92274f572ea9SToby Isaac PetscAssertPointer(parts, 4); 92289566063dSJacob Faibussowitsch PetscCall(DMGetNumAuxiliaryVec(dm, &n)); 92299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &keys)); 92309566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetKeys(dm->auxData, &off, keys)); 92319371c9d4SSatish Balay for (i = 0; i < n; ++i) { 92329371c9d4SSatish Balay labels[i] = keys[i].label; 92339371c9d4SSatish Balay values[i] = keys[i].value; 92349371c9d4SSatish Balay parts[i] = keys[i].part; 92359371c9d4SSatish Balay } 92369566063dSJacob Faibussowitsch PetscCall(PetscFree(keys)); 92373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92389a2a23afSMatthew G. Knepley } 92399a2a23afSMatthew G. Knepley 92409a2a23afSMatthew G. Knepley /*@ 9241bb7acecfSBarry Smith DMCopyAuxiliaryVec - Copy the auxiliary vector data on a `DM` to a new `DM` 92429a2a23afSMatthew G. Knepley 924320f4b53cSBarry Smith Not Collective 92449a2a23afSMatthew G. Knepley 92459a2a23afSMatthew G. Knepley Input Parameter: 9246bb7acecfSBarry Smith . dm - The `DM` 92479a2a23afSMatthew G. Knepley 92489a2a23afSMatthew G. Knepley Output Parameter: 9249bb7acecfSBarry Smith . dmNew - The new `DM`, now with the same auxiliary data 92509a2a23afSMatthew G. Knepley 92519a2a23afSMatthew G. Knepley Level: advanced 92529a2a23afSMatthew G. Knepley 9253bb7acecfSBarry Smith Note: 9254bb7acecfSBarry Smith This is a shallow copy of the auxiliary vectors 9255bb7acecfSBarry Smith 9256e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 92579a2a23afSMatthew G. Knepley @*/ 9258d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyAuxiliaryVec(DM dm, DM dmNew) 9259d71ae5a4SJacob Faibussowitsch { 92609a2a23afSMatthew G. Knepley PetscFunctionBegin; 92619a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9262d705d0eaSStefano Zampini PetscValidHeaderSpecific(dmNew, DM_CLASSID, 2); 9263d705d0eaSStefano Zampini if (dm == dmNew) PetscFunctionReturn(PETSC_SUCCESS); 9264e4d5475eSStefano Zampini PetscCall(DMClearAuxiliaryVec(dmNew)); 9265e4d5475eSStefano Zampini 9266e4d5475eSStefano Zampini PetscCall(PetscHMapAuxDestroy(&dmNew->auxData)); 92679566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDuplicate(dm->auxData, &dmNew->auxData)); 9268d705d0eaSStefano Zampini { 9269d705d0eaSStefano Zampini Vec *auxData; 9270d705d0eaSStefano Zampini PetscInt n, i, off = 0; 9271d705d0eaSStefano Zampini 9272d705d0eaSStefano Zampini PetscCall(PetscHMapAuxGetSize(dmNew->auxData, &n)); 9273d705d0eaSStefano Zampini PetscCall(PetscMalloc1(n, &auxData)); 9274d705d0eaSStefano Zampini PetscCall(PetscHMapAuxGetVals(dmNew->auxData, &off, auxData)); 9275d705d0eaSStefano Zampini for (i = 0; i < n; ++i) PetscCall(PetscObjectReference((PetscObject)auxData[i])); 9276d705d0eaSStefano Zampini PetscCall(PetscFree(auxData)); 9277e4d5475eSStefano Zampini } 9278e4d5475eSStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 9279e4d5475eSStefano Zampini } 9280e4d5475eSStefano Zampini 9281e4d5475eSStefano Zampini /*@ 9282e4d5475eSStefano Zampini DMClearAuxiliaryVec - Destroys the auxiliary vector information and creates a new empty one 9283e4d5475eSStefano Zampini 9284e4d5475eSStefano Zampini Not Collective 9285e4d5475eSStefano Zampini 9286e4d5475eSStefano Zampini Input Parameter: 9287e4d5475eSStefano Zampini . dm - The `DM` 9288e4d5475eSStefano Zampini 9289e4d5475eSStefano Zampini Level: advanced 9290e4d5475eSStefano Zampini 9291e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMCopyAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 9292e4d5475eSStefano Zampini @*/ 9293e4d5475eSStefano Zampini PetscErrorCode DMClearAuxiliaryVec(DM dm) 9294e4d5475eSStefano Zampini { 9295e4d5475eSStefano Zampini Vec *auxData; 9296e4d5475eSStefano Zampini PetscInt n, i, off = 0; 9297e4d5475eSStefano Zampini 9298e4d5475eSStefano Zampini PetscFunctionBegin; 9299e4d5475eSStefano Zampini PetscCall(PetscHMapAuxGetSize(dm->auxData, &n)); 9300d705d0eaSStefano Zampini PetscCall(PetscMalloc1(n, &auxData)); 9301e4d5475eSStefano Zampini PetscCall(PetscHMapAuxGetVals(dm->auxData, &off, auxData)); 9302d705d0eaSStefano Zampini for (i = 0; i < n; ++i) PetscCall(VecDestroy(&auxData[i])); 9303d705d0eaSStefano Zampini PetscCall(PetscFree(auxData)); 9304e4d5475eSStefano Zampini PetscCall(PetscHMapAuxDestroy(&dm->auxData)); 9305e4d5475eSStefano Zampini PetscCall(PetscHMapAuxCreate(&dm->auxData)); 93063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 93079a2a23afSMatthew G. Knepley } 9308b5a892a1SMatthew G. Knepley 9309cc4c1da9SBarry Smith /*@ 9310bb7acecfSBarry Smith DMPolytopeMatchOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9311b5a892a1SMatthew G. Knepley 931220f4b53cSBarry Smith Not Collective 9313b5a892a1SMatthew G. Knepley 9314b5a892a1SMatthew G. Knepley Input Parameters: 9315bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9316b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9317b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9318b5a892a1SMatthew G. Knepley 9319b5a892a1SMatthew G. Knepley Output Parameters: 9320bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9321b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9322b5a892a1SMatthew G. Knepley 9323b5a892a1SMatthew G. Knepley Level: advanced 9324b5a892a1SMatthew G. Knepley 9325bb7acecfSBarry Smith Note: 9326bb7acecfSBarry Smith An arrangement is a face order combined with an orientation for each face 9327bb7acecfSBarry Smith 932885036b15SMatthew G. Knepley Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2 9329bb7acecfSBarry Smith that labels each arrangement (face ordering plus orientation for each face). 9330bb7acecfSBarry Smith 9331bb7acecfSBarry Smith See `DMPolytopeMatchVertexOrientation()` to find a new vertex orientation that takes the source vertex arrangement to the target vertex arrangement 9332bb7acecfSBarry Smith 93331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetVertexOrientation()` 9334b5a892a1SMatthew G. Knepley @*/ 9335d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt, PetscBool *found) 9336d71ae5a4SJacob Faibussowitsch { 9337b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetConeSize(ct); 933885036b15SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2; 9339b5a892a1SMatthew G. Knepley PetscInt o, c; 9340b5a892a1SMatthew G. Knepley 9341b5a892a1SMatthew G. Knepley PetscFunctionBegin; 93429371c9d4SSatish Balay if (!nO) { 93439371c9d4SSatish Balay *ornt = 0; 93449371c9d4SSatish Balay *found = PETSC_TRUE; 93453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 93469371c9d4SSatish Balay } 9347b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 934885036b15SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangement(ct, o); 9349b5a892a1SMatthew G. Knepley 93509371c9d4SSatish Balay for (c = 0; c < cS; ++c) 93519371c9d4SSatish Balay if (sourceCone[arr[c * 2]] != targetCone[c]) break; 93529371c9d4SSatish Balay if (c == cS) { 93539371c9d4SSatish Balay *ornt = o; 93549371c9d4SSatish Balay break; 93559371c9d4SSatish Balay } 9356b5a892a1SMatthew G. Knepley } 9357b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 93583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9359b5a892a1SMatthew G. Knepley } 9360b5a892a1SMatthew G. Knepley 9361cc4c1da9SBarry Smith /*@ 9362bb7acecfSBarry Smith DMPolytopeGetOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9363b5a892a1SMatthew G. Knepley 936420f4b53cSBarry Smith Not Collective 9365b5a892a1SMatthew G. Knepley 9366b5a892a1SMatthew G. Knepley Input Parameters: 9367bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9368b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9369b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9370b5a892a1SMatthew G. Knepley 93712fe279fdSBarry Smith Output Parameter: 9372bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9373b5a892a1SMatthew G. Knepley 9374b5a892a1SMatthew G. Knepley Level: advanced 9375b5a892a1SMatthew G. Knepley 9376bb7acecfSBarry Smith Note: 9377bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchOrientation()` except it will generate an error if no suitable orientation can be found. 9378bb7acecfSBarry Smith 937973ff1848SBarry Smith Developer Note: 9380bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchOrientation()` and error if none is found 9381bb7acecfSBarry Smith 93821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchOrientation()`, `DMPolytopeGetVertexOrientation()`, `DMPolytopeMatchVertexOrientation()` 9383b5a892a1SMatthew G. Knepley @*/ 9384d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9385d71ae5a4SJacob Faibussowitsch { 9386b5a892a1SMatthew G. Knepley PetscBool found; 9387b5a892a1SMatthew G. Knepley 9388b5a892a1SMatthew G. Knepley PetscFunctionBegin; 93899566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchOrientation(ct, sourceCone, targetCone, ornt, &found)); 93907a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 93913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9392b5a892a1SMatthew G. Knepley } 9393b5a892a1SMatthew G. Knepley 9394cc4c1da9SBarry Smith /*@ 9395bb7acecfSBarry Smith DMPolytopeMatchVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9396b5a892a1SMatthew G. Knepley 939720f4b53cSBarry Smith Not Collective 9398b5a892a1SMatthew G. Knepley 9399b5a892a1SMatthew G. Knepley Input Parameters: 9400bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9401b5a892a1SMatthew G. Knepley . sourceVert - The source arrangement of vertices 9402b5a892a1SMatthew G. Knepley - targetVert - The target arrangement of vertices 9403b5a892a1SMatthew G. Knepley 9404b5a892a1SMatthew G. Knepley Output Parameters: 9405bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9406b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9407b5a892a1SMatthew G. Knepley 9408b5a892a1SMatthew G. Knepley Level: advanced 9409b5a892a1SMatthew G. Knepley 941073ff1848SBarry Smith Notes: 9411bb7acecfSBarry Smith An arrangement is a vertex order 9412bb7acecfSBarry Smith 941385036b15SMatthew G. Knepley Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2 9414bb7acecfSBarry Smith that labels each arrangement (vertex ordering). 9415bb7acecfSBarry Smith 9416bb7acecfSBarry Smith See `DMPolytopeMatchOrientation()` to find a new face orientation that takes the source face arrangement to the target face arrangement 9417bb7acecfSBarry Smith 941885036b15SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchOrientation()`, `DMPolytopeTypeGetNumVertices()`, `DMPolytopeTypeGetVertexArrangement()` 9419b5a892a1SMatthew G. Knepley @*/ 9420d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchVertexOrientation(DMPolytopeType ct, const PetscInt sourceVert[], const PetscInt targetVert[], PetscInt *ornt, PetscBool *found) 9421d71ae5a4SJacob Faibussowitsch { 9422b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetNumVertices(ct); 942385036b15SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2; 9424b5a892a1SMatthew G. Knepley PetscInt o, c; 9425b5a892a1SMatthew G. Knepley 9426b5a892a1SMatthew G. Knepley PetscFunctionBegin; 94279371c9d4SSatish Balay if (!nO) { 94289371c9d4SSatish Balay *ornt = 0; 94299371c9d4SSatish Balay *found = PETSC_TRUE; 94303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 94319371c9d4SSatish Balay } 9432b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 943385036b15SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetVertexArrangement(ct, o); 9434b5a892a1SMatthew G. Knepley 94359371c9d4SSatish Balay for (c = 0; c < cS; ++c) 94369371c9d4SSatish Balay if (sourceVert[arr[c]] != targetVert[c]) break; 94379371c9d4SSatish Balay if (c == cS) { 94389371c9d4SSatish Balay *ornt = o; 94399371c9d4SSatish Balay break; 94409371c9d4SSatish Balay } 9441b5a892a1SMatthew G. Knepley } 9442b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 94433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9444b5a892a1SMatthew G. Knepley } 9445b5a892a1SMatthew G. Knepley 9446cc4c1da9SBarry Smith /*@ 9447bb7acecfSBarry Smith DMPolytopeGetVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9448b5a892a1SMatthew G. Knepley 944920f4b53cSBarry Smith Not Collective 9450b5a892a1SMatthew G. Knepley 9451b5a892a1SMatthew G. Knepley Input Parameters: 9452bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9453b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of vertices 9454b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of vertices 9455b5a892a1SMatthew G. Knepley 94562fe279fdSBarry Smith Output Parameter: 9457bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9458b5a892a1SMatthew G. Knepley 9459b5a892a1SMatthew G. Knepley Level: advanced 9460b5a892a1SMatthew G. Knepley 9461bb7acecfSBarry Smith Note: 9462bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchVertexOrientation()` except it errors if not orientation is possible. 9463bb7acecfSBarry Smith 946473ff1848SBarry Smith Developer Note: 9465bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchVertexOrientation()` and error if none is found 9466bb7acecfSBarry Smith 94671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetOrientation()` 9468b5a892a1SMatthew G. Knepley @*/ 9469d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetVertexOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9470d71ae5a4SJacob Faibussowitsch { 9471b5a892a1SMatthew G. Knepley PetscBool found; 9472b5a892a1SMatthew G. Knepley 9473b5a892a1SMatthew G. Knepley PetscFunctionBegin; 94749566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchVertexOrientation(ct, sourceCone, targetCone, ornt, &found)); 94757a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 94763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9477b5a892a1SMatthew G. Knepley } 9478012bc364SMatthew G. Knepley 9479cc4c1da9SBarry Smith /*@ 9480012bc364SMatthew G. Knepley DMPolytopeInCellTest - Check whether a point lies inside the reference cell of given type 9481012bc364SMatthew G. Knepley 948220f4b53cSBarry Smith Not Collective 9483012bc364SMatthew G. Knepley 9484012bc364SMatthew G. Knepley Input Parameters: 9485bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9486012bc364SMatthew G. Knepley - point - Coordinates of the point 9487012bc364SMatthew G. Knepley 94882fe279fdSBarry Smith Output Parameter: 9489012bc364SMatthew G. Knepley . inside - Flag indicating whether the point is inside the reference cell of given type 9490012bc364SMatthew G. Knepley 9491012bc364SMatthew G. Knepley Level: advanced 9492012bc364SMatthew G. Knepley 94931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMLocatePoints()` 9494012bc364SMatthew G. Knepley @*/ 9495d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeInCellTest(DMPolytopeType ct, const PetscReal point[], PetscBool *inside) 9496d71ae5a4SJacob Faibussowitsch { 9497012bc364SMatthew G. Knepley PetscReal sum = 0.0; 9498012bc364SMatthew G. Knepley PetscInt d; 9499012bc364SMatthew G. Knepley 9500012bc364SMatthew G. Knepley PetscFunctionBegin; 9501012bc364SMatthew G. Knepley *inside = PETSC_TRUE; 9502012bc364SMatthew G. Knepley switch (ct) { 9503012bc364SMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 9504012bc364SMatthew G. Knepley case DM_POLYTOPE_TETRAHEDRON: 9505012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) { 95069371c9d4SSatish Balay if (point[d] < -1.0) { 95079371c9d4SSatish Balay *inside = PETSC_FALSE; 95089371c9d4SSatish Balay break; 95099371c9d4SSatish Balay } 9510012bc364SMatthew G. Knepley sum += point[d]; 9511012bc364SMatthew G. Knepley } 95129371c9d4SSatish Balay if (sum > PETSC_SMALL) { 95139371c9d4SSatish Balay *inside = PETSC_FALSE; 95149371c9d4SSatish Balay break; 95159371c9d4SSatish Balay } 9516012bc364SMatthew G. Knepley break; 9517012bc364SMatthew G. Knepley case DM_POLYTOPE_QUADRILATERAL: 9518012bc364SMatthew G. Knepley case DM_POLYTOPE_HEXAHEDRON: 9519012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) 95209371c9d4SSatish Balay if (PetscAbsReal(point[d]) > 1. + PETSC_SMALL) { 95219371c9d4SSatish Balay *inside = PETSC_FALSE; 9522012bc364SMatthew G. Knepley break; 95239371c9d4SSatish Balay } 95249371c9d4SSatish Balay break; 9525d71ae5a4SJacob Faibussowitsch default: 9526d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported polytope type %s", DMPolytopeTypes[ct]); 9527012bc364SMatthew G. Knepley } 95283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9529012bc364SMatthew G. Knepley } 9530adc21957SMatthew G. Knepley 9531adc21957SMatthew G. Knepley /*@ 9532adc21957SMatthew G. Knepley DMReorderSectionSetDefault - Set flag indicating whether the local section should be reordered by default 9533adc21957SMatthew G. Knepley 9534adc21957SMatthew G. Knepley Logically collective 9535adc21957SMatthew G. Knepley 9536adc21957SMatthew G. Knepley Input Parameters: 9537adc21957SMatthew G. Knepley + dm - The DM 9538adc21957SMatthew G. Knepley - reorder - Flag for reordering 9539adc21957SMatthew G. Knepley 9540adc21957SMatthew G. Knepley Level: intermediate 9541adc21957SMatthew G. Knepley 9542adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetDefault()` 9543adc21957SMatthew G. Knepley @*/ 9544adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetDefault(DM dm, DMReorderDefaultFlag reorder) 9545adc21957SMatthew G. Knepley { 9546adc21957SMatthew G. Knepley PetscFunctionBegin; 9547adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9548adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionSetDefault_C", (DM, DMReorderDefaultFlag), (dm, reorder)); 9549adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9550adc21957SMatthew G. Knepley } 9551adc21957SMatthew G. Knepley 9552adc21957SMatthew G. Knepley /*@ 9553adc21957SMatthew G. Knepley DMReorderSectionGetDefault - Get flag indicating whether the local section should be reordered by default 9554adc21957SMatthew G. Knepley 9555adc21957SMatthew G. Knepley Not collective 9556adc21957SMatthew G. Knepley 9557adc21957SMatthew G. Knepley Input Parameter: 9558adc21957SMatthew G. Knepley . dm - The DM 9559adc21957SMatthew G. Knepley 9560adc21957SMatthew G. Knepley Output Parameter: 9561adc21957SMatthew G. Knepley . reorder - Flag for reordering 9562adc21957SMatthew G. Knepley 9563adc21957SMatthew G. Knepley Level: intermediate 9564adc21957SMatthew G. Knepley 9565adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()` 9566adc21957SMatthew G. Knepley @*/ 9567adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetDefault(DM dm, DMReorderDefaultFlag *reorder) 9568adc21957SMatthew G. Knepley { 9569adc21957SMatthew G. Knepley PetscFunctionBegin; 9570adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9571adc21957SMatthew G. Knepley PetscAssertPointer(reorder, 2); 9572adc21957SMatthew G. Knepley *reorder = DM_REORDER_DEFAULT_NOTSET; 9573adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionGetDefault_C", (DM, DMReorderDefaultFlag *), (dm, reorder)); 9574adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9575adc21957SMatthew G. Knepley } 9576adc21957SMatthew G. Knepley 9577cc4c1da9SBarry Smith /*@ 9578adc21957SMatthew G. Knepley DMReorderSectionSetType - Set the type of local section reordering 9579adc21957SMatthew G. Knepley 9580adc21957SMatthew G. Knepley Logically collective 9581adc21957SMatthew G. Knepley 9582adc21957SMatthew G. Knepley Input Parameters: 9583adc21957SMatthew G. Knepley + dm - The DM 9584adc21957SMatthew G. Knepley - reorder - The reordering method 9585adc21957SMatthew G. Knepley 9586adc21957SMatthew G. Knepley Level: intermediate 9587adc21957SMatthew G. Knepley 9588adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetType()`, `DMReorderSectionSetDefault()` 9589adc21957SMatthew G. Knepley @*/ 9590adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetType(DM dm, MatOrderingType reorder) 9591adc21957SMatthew G. Knepley { 9592adc21957SMatthew G. Knepley PetscFunctionBegin; 9593adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9594adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionSetType_C", (DM, MatOrderingType), (dm, reorder)); 9595adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9596adc21957SMatthew G. Knepley } 9597adc21957SMatthew G. Knepley 9598cc4c1da9SBarry Smith /*@ 9599adc21957SMatthew G. Knepley DMReorderSectionGetType - Get the reordering type for the local section 9600adc21957SMatthew G. Knepley 9601adc21957SMatthew G. Knepley Not collective 9602adc21957SMatthew G. Knepley 9603adc21957SMatthew G. Knepley Input Parameter: 9604adc21957SMatthew G. Knepley . dm - The DM 9605adc21957SMatthew G. Knepley 9606adc21957SMatthew G. Knepley Output Parameter: 9607adc21957SMatthew G. Knepley . reorder - The reordering method 9608adc21957SMatthew G. Knepley 9609adc21957SMatthew G. Knepley Level: intermediate 9610adc21957SMatthew G. Knepley 9611adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()`, `DMReorderSectionGetDefault()` 9612adc21957SMatthew G. Knepley @*/ 9613adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetType(DM dm, MatOrderingType *reorder) 9614adc21957SMatthew G. Knepley { 9615adc21957SMatthew G. Knepley PetscFunctionBegin; 9616adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9617adc21957SMatthew G. Knepley PetscAssertPointer(reorder, 2); 9618adc21957SMatthew G. Knepley *reorder = NULL; 9619adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionGetType_C", (DM, MatOrderingType *), (dm, reorder)); 9620adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9621adc21957SMatthew G. Knepley } 9622