1d0295fc0SJunchao Zhang #include <petscvec.h> 2af0996ceSBarry Smith #include <petsc/private/dmimpl.h> /*I "petscdm.h" I*/ 3c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 4e6f8dbb6SToby Isaac #include <petsc/private/petscdsimpl.h> /*I "petscds.h" I*/ 53e922f36SToby Isaac #include <petscdmplex.h> 6d2b2dc1eSMatthew G. Knepley #include <petscdmceed.h> 7f19dbd58SToby Isaac #include <petscdmfield.h> 80c312b8eSJed Brown #include <petscsf.h> 92764a2aaSMatthew G. Knepley #include <petscds.h> 1047c6ae99SBarry Smith 11f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 12f918ec44SMatthew G. Knepley #include <petscfeceed.h> 13f918ec44SMatthew G. Knepley #endif 14f918ec44SMatthew G. Knepley 15732e2eb9SMatthew G Knepley PetscClassId DM_CLASSID; 16d67d17b1SMatthew G. Knepley PetscClassId DMLABEL_CLASSID; 1742d0c57aSJames Wright PetscLogEvent DM_Convert, DM_GlobalToLocal, DM_LocalToGlobal, DM_LocalToLocal, DM_LocatePoints, DM_Coarsen, DM_Refine, DM_CreateInterpolation, DM_CreateRestriction, DM_CreateInjection, DM_CreateMatrix, DM_CreateMassMatrix, DM_Load, DM_View, DM_AdaptInterpolator, DM_ProjectFunction; 1867a56275SMatthew G Knepley 19ea78f98cSLisandro Dalcin const char *const DMBoundaryTypes[] = {"NONE", "GHOSTED", "MIRROR", "PERIODIC", "TWIST", "DMBoundaryType", "DM_BOUNDARY_", NULL}; 2078e542f3SJed Brown const char *const DMBoundaryConditionTypes[] = {"INVALID", "ESSENTIAL", "NATURAL", "INVALID", "LOWER_BOUND", "ESSENTIAL_FIELD", "NATURAL_FIELD", "INVALID", "UPPER_BOUND", "ESSENTIAL_BD_FIELD", "NATURAL_RIEMANN", "DMBoundaryConditionType", 2178e542f3SJed Brown "DM_BC_", NULL}; 220e762ea3SJed Brown const char *const DMBlockingTypes[] = {"TOPOLOGICAL_POINT", "FIELD_NODE", "DMBlockingType", "DM_BLOCKING_", NULL}; 23476787b7SMatthew G. Knepley const char *const DMPolytopeTypes[] = 24476787b7SMatthew G. Knepley {"vertex", "segment", "tensor_segment", "triangle", "quadrilateral", "tensor_quad", "tetrahedron", "hexahedron", "triangular_prism", "tensor_triangular_prism", "tensor_quadrilateral_prism", "pyramid", "FV_ghost_cell", "interior_ghost_cell", 25476787b7SMatthew G. Knepley "unknown", "unknown_cell", "unknown_face", "invalid", "DMPolytopeType", "DM_POLYTOPE_", NULL}; 262cbb9b06SVaclav Hapla const char *const DMCopyLabelsModes[] = {"replace", "keep", "fail", "DMCopyLabelsMode", "DM_COPY_LABELS_", NULL}; 2760c22052SBarry Smith 28a4121054SBarry Smith /*@ 29bb7acecfSBarry Smith DMCreate - Creates an empty `DM` object. `DM`s are the abstract objects in PETSc that mediate between meshes and discretizations and the 300b4b7b1cSBarry Smith algebraic solvers, time integrators, and optimization algorithms in PETSc. 31a4121054SBarry Smith 32d083f849SBarry Smith Collective 33a4121054SBarry Smith 34a4121054SBarry Smith Input Parameter: 35bb7acecfSBarry Smith . comm - The communicator for the `DM` object 36a4121054SBarry Smith 37a4121054SBarry Smith Output Parameter: 38bb7acecfSBarry Smith . dm - The `DM` object 39a4121054SBarry Smith 40a4121054SBarry Smith Level: beginner 41a4121054SBarry Smith 42bb7acecfSBarry Smith Notes: 43bb7acecfSBarry Smith See `DMType` for a brief summary of available `DM`. 44bb7acecfSBarry Smith 45bb7acecfSBarry Smith The type must then be set with `DMSetType()`. If you never call `DMSetType()` it will generate an 460b4b7b1cSBarry Smith error when you try to use the `dm`. 470b4b7b1cSBarry Smith 480b4b7b1cSBarry Smith `DM` is an orphan initialism or orphan acronym, the letters have no meaning and never did. 49bb7acecfSBarry Smith 501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMType`, `DMDACreate()`, `DMDA`, `DMSLICED`, `DMCOMPOSITE`, `DMPLEX`, `DMMOAB`, `DMNETWORK` 51a4121054SBarry Smith @*/ 52d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreate(MPI_Comm comm, DM *dm) 53d71ae5a4SJacob Faibussowitsch { 54a4121054SBarry Smith DM v; 55e5e52638SMatthew G. Knepley PetscDS ds; 56a4121054SBarry Smith 57a4121054SBarry Smith PetscFunctionBegin; 584f572ea9SToby Isaac PetscAssertPointer(dm, 2); 59377f809aSBarry Smith 609566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 619566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(v, DM_CLASSID, "DM", "Distribution Manager", "DM", comm, DMDestroy, DMView)); 6262e5d2d2SJDBetteridge ((PetscObject)v)->non_cyclic_references = &DMCountNonCyclicReferences; 6349be4549SMatthew G. Knepley v->setupcalled = PETSC_FALSE; 6449be4549SMatthew G. Knepley v->setfromoptionscalled = PETSC_FALSE; 650298fd71SBarry Smith v->ltogmap = NULL; 66a4ea9b21SRichard Tran Mills v->bind_below = 0; 671411c6eeSJed Brown v->bs = 1; 68171400e9SBarry Smith v->coloringtype = IS_COLORING_GLOBAL; 699566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sf)); 709566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sectionSF)); 71c58f1c22SToby Isaac v->labels = NULL; 7234aa8a36SMatthew G. Knepley v->adjacency[0] = PETSC_FALSE; 7334aa8a36SMatthew G. Knepley v->adjacency[1] = PETSC_TRUE; 74c58f1c22SToby Isaac v->depthLabel = NULL; 75ba2698f1SMatthew G. Knepley v->celltypeLabel = NULL; 761bb6d2a8SBarry Smith v->localSection = NULL; 771bb6d2a8SBarry Smith v->globalSection = NULL; 783b8ba7d1SJed Brown v->defaultConstraint.section = NULL; 793b8ba7d1SJed Brown v->defaultConstraint.mat = NULL; 8079769bd5SJed Brown v->defaultConstraint.bias = NULL; 816858538eSMatthew G. Knepley v->coordinates[0].dim = PETSC_DEFAULT; 826858538eSMatthew G. Knepley v->coordinates[1].dim = PETSC_DEFAULT; 836858538eSMatthew G. Knepley v->sparseLocalize = PETSC_TRUE; 8496173672SStefano Zampini v->dim = PETSC_DETERMINE; 85435a35e8SMatthew G Knepley { 86435a35e8SMatthew G Knepley PetscInt i; 87435a35e8SMatthew G Knepley for (i = 0; i < 10; ++i) { 880298fd71SBarry Smith v->nullspaceConstructors[i] = NULL; 89f9d4088aSMatthew G. Knepley v->nearnullspaceConstructors[i] = NULL; 90435a35e8SMatthew G Knepley } 91435a35e8SMatthew G Knepley } 929566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 9307218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(v, NULL, NULL, ds, NULL)); 949566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 959566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxCreate(&v->auxData)); 9614f150ffSMatthew G. Knepley v->dmBC = NULL; 97a8fb8f29SToby Isaac v->coarseMesh = NULL; 98f4d763aaSMatthew G. Knepley v->outputSequenceNum = -1; 99cdb7a50dSMatthew G. Knepley v->outputSequenceVal = 0.0; 1009566063dSJacob Faibussowitsch PetscCall(DMSetVecType(v, VECSTANDARD)); 1019566063dSJacob Faibussowitsch PetscCall(DMSetMatType(v, MATAIJ)); 1024a7a4c06SLawrence Mitchell 1031411c6eeSJed Brown *dm = v; 1043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 105a4121054SBarry Smith } 106a4121054SBarry Smith 10738221697SMatthew G. Knepley /*@ 108bb7acecfSBarry Smith DMClone - Creates a `DM` object with the same topology as the original. 10938221697SMatthew G. Knepley 110d083f849SBarry Smith Collective 11138221697SMatthew G. Knepley 11238221697SMatthew G. Knepley Input Parameter: 113bb7acecfSBarry Smith . dm - The original `DM` object 11438221697SMatthew G. Knepley 11538221697SMatthew G. Knepley Output Parameter: 116bb7acecfSBarry Smith . newdm - The new `DM` object 11738221697SMatthew G. Knepley 11838221697SMatthew G. Knepley Level: beginner 11938221697SMatthew G. Knepley 1201cb8cacdSPatrick Sanan Notes: 121bb7acecfSBarry Smith For some `DM` implementations this is a shallow clone, the result of which may share (reference counted) information with its parent. For example, 122bb7acecfSBarry Smith `DMClone()` applied to a `DMPLEX` object will result in a new `DMPLEX` that shares the topology with the original `DMPLEX`. It does not 123bb7acecfSBarry Smith share the `PetscSection` of the original `DM`. 1241bb6d2a8SBarry Smith 125bb7acecfSBarry Smith The clone is considered set up if the original has been set up. 12689706ed2SPatrick Sanan 127bb7acecfSBarry Smith Use `DMConvert()` for a general way to create new `DM` from a given `DM` 128bb7acecfSBarry Smith 12960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMSetType()`, `DMSetLocalSection()`, `DMSetGlobalSection()`, `DMPLEX`, `DMConvert()` 13038221697SMatthew G. Knepley @*/ 131d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClone(DM dm, DM *newdm) 132d71ae5a4SJacob Faibussowitsch { 13338221697SMatthew G. Knepley PetscSF sf; 13438221697SMatthew G. Knepley Vec coords; 13538221697SMatthew G. Knepley void *ctx; 136ec196627SMatthew G. Knepley MatOrderingType otype; 137ec196627SMatthew G. Knepley DMReorderDefaultFlag flg; 1386858538eSMatthew G. Knepley PetscInt dim, cdim, i; 13938221697SMatthew G. Knepley 14038221697SMatthew G. Knepley PetscFunctionBegin; 14138221697SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1424f572ea9SToby Isaac PetscAssertPointer(newdm, 2); 1439566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), newdm)); 1449566063dSJacob Faibussowitsch PetscCall(DMCopyLabels(dm, *newdm, PETSC_COPY_VALUES, PETSC_TRUE, DM_COPY_LABELS_FAIL)); 145ddf8437dSMatthew G. Knepley (*newdm)->leveldown = dm->leveldown; 146ddf8437dSMatthew G. Knepley (*newdm)->levelup = dm->levelup; 147c8a6034eSMark (*newdm)->prealloc_only = dm->prealloc_only; 148fc214432SJed Brown (*newdm)->prealloc_skip = dm->prealloc_skip; 1499566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->vectype)); 1509566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*newdm)->vectype)); 1519566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->mattype)); 1529566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*newdm)->mattype)); 1539566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 1549566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*newdm, dim)); 155dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, clone, newdm); 1563f22bcbcSToby Isaac (*newdm)->setupcalled = dm->setupcalled; 1579566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 1589566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*newdm, sf)); 1599566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dm, &ctx)); 1609566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(*newdm, ctx)); 161ec196627SMatthew G. Knepley PetscCall(DMReorderSectionGetDefault(dm, &flg)); 162ec196627SMatthew G. Knepley PetscCall(DMReorderSectionSetDefault(*newdm, flg)); 163ec196627SMatthew G. Knepley PetscCall(DMReorderSectionGetType(dm, &otype)); 164ec196627SMatthew G. Knepley PetscCall(DMReorderSectionSetType(*newdm, otype)); 1656858538eSMatthew G. Knepley for (i = 0; i < 2; ++i) { 1666858538eSMatthew G. Knepley if (dm->coordinates[i].dm) { 167be4c1c3eSMatthew G. Knepley DM ncdm; 168be4c1c3eSMatthew G. Knepley PetscSection cs; 1695a0206caSToby Isaac PetscInt pEnd = -1, pEndMax = -1; 170be4c1c3eSMatthew G. Knepley 1716858538eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm->coordinates[i].dm, &cs)); 1729566063dSJacob Faibussowitsch if (cs) PetscCall(PetscSectionGetChart(cs, NULL, &pEnd)); 173462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&pEnd, &pEndMax, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 1745a0206caSToby Isaac if (pEndMax >= 0) { 1756858538eSMatthew G. Knepley PetscCall(DMClone(dm->coordinates[i].dm, &ncdm)); 1766858538eSMatthew G. Knepley PetscCall(DMCopyDisc(dm->coordinates[i].dm, ncdm)); 1779566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(ncdm, cs)); 1785e50ca95SJames Wright if (dm->coordinates[i].dm->periodic.setup) { 1795e50ca95SJames Wright ncdm->periodic.setup = dm->coordinates[i].dm->periodic.setup; 1805e50ca95SJames Wright PetscCall(ncdm->periodic.setup(ncdm)); 1815e50ca95SJames Wright } 1826858538eSMatthew G. Knepley if (i) PetscCall(DMSetCellCoordinateDM(*newdm, ncdm)); 1836858538eSMatthew G. Knepley else PetscCall(DMSetCoordinateDM(*newdm, ncdm)); 1849566063dSJacob Faibussowitsch PetscCall(DMDestroy(&ncdm)); 185be4c1c3eSMatthew G. Knepley } 186be4c1c3eSMatthew G. Knepley } 1876858538eSMatthew G. Knepley } 1889566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 1899566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*newdm, cdim)); 1909566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coords)); 19138221697SMatthew G. Knepley if (coords) { 1929566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(*newdm, coords)); 19338221697SMatthew G. Knepley } else { 1949566063dSJacob Faibussowitsch PetscCall(DMGetCoordinates(dm, &coords)); 1959566063dSJacob Faibussowitsch if (coords) PetscCall(DMSetCoordinates(*newdm, coords)); 19638221697SMatthew G. Knepley } 1976858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinatesLocal(dm, &coords)); 1986858538eSMatthew G. Knepley if (coords) { 1996858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinatesLocal(*newdm, coords)); 2006858538eSMatthew G. Knepley } else { 2016858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinates(dm, &coords)); 2026858538eSMatthew G. Knepley if (coords) PetscCall(DMSetCellCoordinates(*newdm, coords)); 2036858538eSMatthew G. Knepley } 20490b157c4SStefano Zampini { 2054fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 2066858538eSMatthew G. Knepley 2074fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 2084fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*newdm, maxCell, Lstart, L)); 209c6b900c6SMatthew G. Knepley } 21034aa8a36SMatthew G. Knepley { 21134aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 21234aa8a36SMatthew G. Knepley 2139566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, &useCone, &useClosure)); 2149566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(*newdm, PETSC_DEFAULT, useCone, useClosure)); 21534aa8a36SMatthew G. Knepley } 2163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21738221697SMatthew G. Knepley } 21838221697SMatthew G. Knepley 2195d83a8b1SBarry Smith /*@ 2205d83a8b1SBarry Smith DMSetVecType - Sets the type of vector to be created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 2219a42bb27SBarry Smith 22220f4b53cSBarry Smith Logically Collective 2239a42bb27SBarry Smith 224147403d9SBarry Smith Input Parameters: 22532546409SMatthew G. Knepley + dm - initial distributed array 226bb7acecfSBarry Smith - ctype - the vector type, for example `VECSTANDARD`, `VECCUDA`, or `VECVIENNACL` 2279a42bb27SBarry Smith 22820f4b53cSBarry Smith Options Database Key: 229147403d9SBarry Smith . -dm_vec_type ctype - the type of vector to create 2309a42bb27SBarry Smith 2319a42bb27SBarry Smith Level: intermediate 2329a42bb27SBarry Smith 23360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMGetVecType()`, `DMSetMatType()`, `DMGetMatType()`, 234bb7acecfSBarry Smith `VECSTANDARD`, `VECCUDA`, `VECVIENNACL`, `DMCreateLocalVector()`, `DMCreateGlobalVector()` 2359a42bb27SBarry Smith @*/ 23632546409SMatthew G. Knepley PetscErrorCode DMSetVecType(DM dm, VecType ctype) 237d71ae5a4SJacob Faibussowitsch { 23832546409SMatthew G. Knepley char *tmp; 23932546409SMatthew G. Knepley 2409a42bb27SBarry Smith PetscFunctionBegin; 24132546409SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 24232546409SMatthew G. Knepley PetscAssertPointer(ctype, 2); 24332546409SMatthew G. Knepley tmp = (char *)dm->vectype; 24432546409SMatthew G. Knepley PetscCall(PetscStrallocpy(ctype, (char **)&dm->vectype)); 24532546409SMatthew G. Knepley PetscCall(PetscFree(tmp)); 2463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2479a42bb27SBarry Smith } 2489a42bb27SBarry Smith 2495d83a8b1SBarry Smith /*@ 250bb7acecfSBarry Smith DMGetVecType - Gets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 251c0dedaeaSBarry Smith 25220f4b53cSBarry Smith Logically Collective 253c0dedaeaSBarry Smith 254c0dedaeaSBarry Smith Input Parameter: 255c0dedaeaSBarry Smith . da - initial distributed array 256c0dedaeaSBarry Smith 257c0dedaeaSBarry Smith Output Parameter: 258c0dedaeaSBarry Smith . ctype - the vector type 259c0dedaeaSBarry Smith 260c0dedaeaSBarry Smith Level: intermediate 261c0dedaeaSBarry Smith 26260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMSetMatType()`, `DMGetMatType()`, `DMSetVecType()` 263c0dedaeaSBarry Smith @*/ 264d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetVecType(DM da, VecType *ctype) 265d71ae5a4SJacob Faibussowitsch { 266c0dedaeaSBarry Smith PetscFunctionBegin; 267c0dedaeaSBarry Smith PetscValidHeaderSpecific(da, DM_CLASSID, 1); 268c0dedaeaSBarry Smith *ctype = da->vectype; 2693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 270c0dedaeaSBarry Smith } 271c0dedaeaSBarry Smith 2725f1ad066SMatthew G Knepley /*@ 273bb7acecfSBarry Smith VecGetDM - Gets the `DM` defining the data layout of the vector 2745f1ad066SMatthew G Knepley 27520f4b53cSBarry Smith Not Collective 2765f1ad066SMatthew G Knepley 2775f1ad066SMatthew G Knepley Input Parameter: 278bb7acecfSBarry Smith . v - The `Vec` 2795f1ad066SMatthew G Knepley 2805f1ad066SMatthew G Knepley Output Parameter: 281bb7acecfSBarry Smith . dm - The `DM` 2825f1ad066SMatthew G Knepley 2835f1ad066SMatthew G Knepley Level: intermediate 2845f1ad066SMatthew G Knepley 285bb7acecfSBarry Smith Note: 286bb7acecfSBarry Smith A `Vec` may not have a `DM` associated with it. 287bb7acecfSBarry Smith 2881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecSetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 2895f1ad066SMatthew G Knepley @*/ 290d71ae5a4SJacob Faibussowitsch PetscErrorCode VecGetDM(Vec v, DM *dm) 291d71ae5a4SJacob Faibussowitsch { 2925f1ad066SMatthew G Knepley PetscFunctionBegin; 2935f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 2944f572ea9SToby Isaac PetscAssertPointer(dm, 2); 2959566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)v, "__PETSc_dm", (PetscObject *)dm)); 2963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2975f1ad066SMatthew G Knepley } 2985f1ad066SMatthew G Knepley 2995f1ad066SMatthew G Knepley /*@ 300bb7acecfSBarry Smith VecSetDM - Sets the `DM` defining the data layout of the vector. 3015f1ad066SMatthew G Knepley 30220f4b53cSBarry Smith Not Collective 3035f1ad066SMatthew G Knepley 3045f1ad066SMatthew G Knepley Input Parameters: 305bb7acecfSBarry Smith + v - The `Vec` 306bb7acecfSBarry Smith - dm - The `DM` 3075f1ad066SMatthew G Knepley 30820f4b53cSBarry Smith Level: developer 30920f4b53cSBarry Smith 31073ff1848SBarry Smith Notes: 311bb7acecfSBarry Smith This is rarely used, generally one uses `DMGetLocalVector()` or `DMGetGlobalVector()` to create a vector associated with a given `DM` 312d9805387SMatthew G. Knepley 313bb7acecfSBarry Smith This is NOT the same as `DMCreateGlobalVector()` since it does not change the view methods or perform other customization, but merely sets the `DM` member. 314bb7acecfSBarry Smith 3151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecGetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 3165f1ad066SMatthew G Knepley @*/ 317d71ae5a4SJacob Faibussowitsch PetscErrorCode VecSetDM(Vec v, DM dm) 318d71ae5a4SJacob Faibussowitsch { 3195f1ad066SMatthew G Knepley PetscFunctionBegin; 3205f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 321d7f50e27SLisandro Dalcin if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 3229566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)v, "__PETSc_dm", (PetscObject)dm)); 3233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3245f1ad066SMatthew G Knepley } 3255f1ad066SMatthew G Knepley 326cc4c1da9SBarry Smith /*@ 327bb7acecfSBarry Smith DMSetISColoringType - Sets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 3288f1509bcSBarry Smith 32920f4b53cSBarry Smith Logically Collective 3308f1509bcSBarry Smith 3318f1509bcSBarry Smith Input Parameters: 332bb7acecfSBarry Smith + dm - the `DM` context 3338f1509bcSBarry Smith - ctype - the matrix type 3348f1509bcSBarry Smith 33520f4b53cSBarry Smith Options Database Key: 3368f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3378f1509bcSBarry Smith 3388f1509bcSBarry Smith Level: intermediate 3398f1509bcSBarry Smith 3401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 341bb7acecfSBarry Smith `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3428f1509bcSBarry Smith @*/ 343d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetISColoringType(DM dm, ISColoringType ctype) 344d71ae5a4SJacob Faibussowitsch { 3458f1509bcSBarry Smith PetscFunctionBegin; 3468f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3478f1509bcSBarry Smith dm->coloringtype = ctype; 3483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3498f1509bcSBarry Smith } 3508f1509bcSBarry Smith 351cc4c1da9SBarry Smith /*@ 352bb7acecfSBarry Smith DMGetISColoringType - Gets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 353521d9a4cSLisandro Dalcin 35420f4b53cSBarry Smith Logically Collective 355521d9a4cSLisandro Dalcin 356521d9a4cSLisandro Dalcin Input Parameter: 357bb7acecfSBarry Smith . dm - the `DM` context 3588f1509bcSBarry Smith 3598f1509bcSBarry Smith Output Parameter: 3608f1509bcSBarry Smith . ctype - the matrix type 3618f1509bcSBarry Smith 36220f4b53cSBarry Smith Options Database Key: 3638f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3648f1509bcSBarry Smith 3658f1509bcSBarry Smith Level: intermediate 3668f1509bcSBarry Smith 3671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 36842747ad1SJacob Faibussowitsch `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3698f1509bcSBarry Smith @*/ 370d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetISColoringType(DM dm, ISColoringType *ctype) 371d71ae5a4SJacob Faibussowitsch { 3728f1509bcSBarry Smith PetscFunctionBegin; 3738f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3748f1509bcSBarry Smith *ctype = dm->coloringtype; 3753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3768f1509bcSBarry Smith } 3778f1509bcSBarry Smith 378cc4c1da9SBarry Smith /*@ 379bb7acecfSBarry Smith DMSetMatType - Sets the type of matrix created with `DMCreateMatrix()` 3808f1509bcSBarry Smith 38120f4b53cSBarry Smith Logically Collective 3828f1509bcSBarry Smith 3838f1509bcSBarry Smith Input Parameters: 384bb7acecfSBarry Smith + dm - the `DM` context 385bb7acecfSBarry Smith - ctype - the matrix type, for example `MATMPIAIJ` 386521d9a4cSLisandro Dalcin 38720f4b53cSBarry Smith Options Database Key: 388bb7acecfSBarry Smith . -dm_mat_type ctype - the type of the matrix to create, for example mpiaij 389521d9a4cSLisandro Dalcin 390521d9a4cSLisandro Dalcin Level: intermediate 391521d9a4cSLisandro Dalcin 39242747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatType`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMGetMatType()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()` 393521d9a4cSLisandro Dalcin @*/ 394d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatType(DM dm, MatType ctype) 395d71ae5a4SJacob Faibussowitsch { 39632546409SMatthew G. Knepley char *tmp; 39732546409SMatthew G. Knepley 398521d9a4cSLisandro Dalcin PetscFunctionBegin; 399521d9a4cSLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 40032546409SMatthew G. Knepley PetscAssertPointer(ctype, 2); 40132546409SMatthew G. Knepley tmp = (char *)dm->mattype; 4029566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(ctype, (char **)&dm->mattype)); 40332546409SMatthew G. Knepley PetscCall(PetscFree(tmp)); 4043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 405521d9a4cSLisandro Dalcin } 406521d9a4cSLisandro Dalcin 407cc4c1da9SBarry Smith /*@ 40820f4b53cSBarry Smith DMGetMatType - Gets the type of matrix that would be created with `DMCreateMatrix()` 409c0dedaeaSBarry Smith 41020f4b53cSBarry Smith Logically Collective 411c0dedaeaSBarry Smith 412c0dedaeaSBarry Smith Input Parameter: 413bb7acecfSBarry Smith . dm - the `DM` context 414c0dedaeaSBarry Smith 415c0dedaeaSBarry Smith Output Parameter: 416c0dedaeaSBarry Smith . ctype - the matrix type 417c0dedaeaSBarry Smith 418c0dedaeaSBarry Smith Level: intermediate 419c0dedaeaSBarry Smith 42042747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMSetMatType()` 421c0dedaeaSBarry Smith @*/ 422d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetMatType(DM dm, MatType *ctype) 423d71ae5a4SJacob Faibussowitsch { 424c0dedaeaSBarry Smith PetscFunctionBegin; 425c0dedaeaSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 426c0dedaeaSBarry Smith *ctype = dm->mattype; 4273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 428c0dedaeaSBarry Smith } 429c0dedaeaSBarry Smith 430c688c046SMatthew G Knepley /*@ 431bb7acecfSBarry Smith MatGetDM - Gets the `DM` defining the data layout of the matrix 432c688c046SMatthew G Knepley 43320f4b53cSBarry Smith Not Collective 434c688c046SMatthew G Knepley 435c688c046SMatthew G Knepley Input Parameter: 436bb7acecfSBarry Smith . A - The `Mat` 437c688c046SMatthew G Knepley 438c688c046SMatthew G Knepley Output Parameter: 439bb7acecfSBarry Smith . dm - The `DM` 440c688c046SMatthew G Knepley 441c688c046SMatthew G Knepley Level: intermediate 442c688c046SMatthew G Knepley 443bb7acecfSBarry Smith Note: 444bb7acecfSBarry Smith A matrix may not have a `DM` associated with it 445bb7acecfSBarry Smith 44673ff1848SBarry Smith Developer Note: 447bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with the `Mat` through a `PetscObjectCompose()` operation 4488f1509bcSBarry Smith 4491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatSetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 450c688c046SMatthew G Knepley @*/ 451d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDM(Mat A, DM *dm) 452d71ae5a4SJacob Faibussowitsch { 453c688c046SMatthew G Knepley PetscFunctionBegin; 454c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4554f572ea9SToby Isaac PetscAssertPointer(dm, 2); 4569566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_dm", (PetscObject *)dm)); 4573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 458c688c046SMatthew G Knepley } 459c688c046SMatthew G Knepley 460c688c046SMatthew G Knepley /*@ 461bb7acecfSBarry Smith MatSetDM - Sets the `DM` defining the data layout of the matrix 462c688c046SMatthew G Knepley 46320f4b53cSBarry Smith Not Collective 464c688c046SMatthew G Knepley 465c688c046SMatthew G Knepley Input Parameters: 46620f4b53cSBarry Smith + A - The `Mat` 46720f4b53cSBarry Smith - dm - The `DM` 468c688c046SMatthew G Knepley 469bb7acecfSBarry Smith Level: developer 470c688c046SMatthew G Knepley 471bb7acecfSBarry Smith Note: 472bb7acecfSBarry Smith This is rarely used in practice, rather `DMCreateMatrix()` is used to create a matrix associated with a particular `DM` 473bb7acecfSBarry Smith 47473ff1848SBarry Smith Developer Note: 475bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with 476bb7acecfSBarry Smith the `Mat` through a `PetscObjectCompose()` operation 4778f1509bcSBarry Smith 4781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatGetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 479c688c046SMatthew G Knepley @*/ 480d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetDM(Mat A, DM dm) 481d71ae5a4SJacob Faibussowitsch { 482c688c046SMatthew G Knepley PetscFunctionBegin; 483c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4848865f1eaSKarl Rupp if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 4859566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_dm", (PetscObject)dm)); 4863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 487c688c046SMatthew G Knepley } 488c688c046SMatthew G Knepley 489cc4c1da9SBarry Smith /*@ 490bb7acecfSBarry Smith DMSetOptionsPrefix - Sets the prefix prepended to all option names when searching through the options database 4919a42bb27SBarry Smith 49220f4b53cSBarry Smith Logically Collective 4939a42bb27SBarry Smith 494d8d19677SJose E. Roman Input Parameters: 49560225df5SJacob Faibussowitsch + dm - the `DM` context 496bb7acecfSBarry Smith - prefix - the prefix to prepend 4979a42bb27SBarry Smith 49820f4b53cSBarry Smith Level: advanced 49920f4b53cSBarry Smith 50020f4b53cSBarry Smith Note: 5019a42bb27SBarry Smith A hyphen (-) must NOT be given at the beginning of the prefix name. 5029a42bb27SBarry Smith The first character of all runtime options is AUTOMATICALLY the hyphen. 5039a42bb27SBarry Smith 5041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscObjectSetOptionsPrefix()`, `DMSetFromOptions()` 5059a42bb27SBarry Smith @*/ 506d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOptionsPrefix(DM dm, const char prefix[]) 507d71ae5a4SJacob Faibussowitsch { 5089a42bb27SBarry Smith PetscFunctionBegin; 5099a42bb27SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5109566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, prefix)); 5111baa6e33SBarry Smith if (dm->sf) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sf, prefix)); 5121baa6e33SBarry Smith if (dm->sectionSF) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sectionSF, prefix)); 5133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5149a42bb27SBarry Smith } 5159a42bb27SBarry Smith 516cc4c1da9SBarry Smith /*@ 517da81f932SPierre Jolivet DMAppendOptionsPrefix - Appends an additional string to an already existing prefix used for searching for 518bb7acecfSBarry Smith `DM` options in the options database. 51931697293SDave May 52020f4b53cSBarry Smith Logically Collective 52131697293SDave May 52231697293SDave May Input Parameters: 523bb7acecfSBarry Smith + dm - the `DM` context 524bb7acecfSBarry Smith - prefix - the string to append to the current prefix 52531697293SDave May 52620f4b53cSBarry Smith Level: advanced 52720f4b53cSBarry Smith 52820f4b53cSBarry Smith Note: 529bb7acecfSBarry Smith If the `DM` does not currently have an options prefix then this value is used alone as the prefix as if `DMSetOptionsPrefix()` had been called. 53031697293SDave May A hyphen (-) must NOT be given at the beginning of the prefix name. 53131697293SDave May The first character of all runtime options is AUTOMATICALLY the hyphen. 53231697293SDave May 5331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMGetOptionsPrefix()`, `PetscObjectAppendOptionsPrefix()`, `DMSetFromOptions()` 53431697293SDave May @*/ 535d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAppendOptionsPrefix(DM dm, const char prefix[]) 536d71ae5a4SJacob Faibussowitsch { 53731697293SDave May PetscFunctionBegin; 53831697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5399566063dSJacob Faibussowitsch PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, prefix)); 5403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 54131697293SDave May } 54231697293SDave May 543cc4c1da9SBarry Smith /*@ 54431697293SDave May DMGetOptionsPrefix - Gets the prefix used for searching for all 545bb7acecfSBarry Smith DM options in the options database. 54631697293SDave May 54731697293SDave May Not Collective 54831697293SDave May 5492fe279fdSBarry Smith Input Parameter: 550bb7acecfSBarry Smith . dm - the `DM` context 55131697293SDave May 5522fe279fdSBarry Smith Output Parameter: 55331697293SDave May . prefix - pointer to the prefix string used is returned 55431697293SDave May 55531697293SDave May Level: advanced 55631697293SDave May 5571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMAppendOptionsPrefix()`, `DMSetFromOptions()` 55831697293SDave May @*/ 559d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOptionsPrefix(DM dm, const char *prefix[]) 560d71ae5a4SJacob Faibussowitsch { 56131697293SDave May PetscFunctionBegin; 56231697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5639566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, prefix)); 5643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56531697293SDave May } 56631697293SDave May 56762e5d2d2SJDBetteridge static PetscErrorCode DMCountNonCyclicReferences_Internal(DM dm, PetscBool recurseCoarse, PetscBool recurseFine, PetscInt *ncrefct) 568d71ae5a4SJacob Faibussowitsch { 5696eb26441SStefano Zampini PetscInt refct = ((PetscObject)dm)->refct; 57088bdff64SToby Isaac 57188bdff64SToby Isaac PetscFunctionBegin; 572aab5bcd8SJed Brown *ncrefct = 0; 57388bdff64SToby Isaac if (dm->coarseMesh && dm->coarseMesh->fineMesh == dm) { 57488bdff64SToby Isaac refct--; 57588bdff64SToby Isaac if (recurseCoarse) { 57688bdff64SToby Isaac PetscInt coarseCount; 57788bdff64SToby Isaac 57862e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->coarseMesh, PETSC_TRUE, PETSC_FALSE, &coarseCount)); 57988bdff64SToby Isaac refct += coarseCount; 58088bdff64SToby Isaac } 58188bdff64SToby Isaac } 58288bdff64SToby Isaac if (dm->fineMesh && dm->fineMesh->coarseMesh == dm) { 58388bdff64SToby Isaac refct--; 58488bdff64SToby Isaac if (recurseFine) { 58588bdff64SToby Isaac PetscInt fineCount; 58688bdff64SToby Isaac 58762e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->fineMesh, PETSC_FALSE, PETSC_TRUE, &fineCount)); 58888bdff64SToby Isaac refct += fineCount; 58988bdff64SToby Isaac } 59088bdff64SToby Isaac } 59188bdff64SToby Isaac *ncrefct = refct; 5923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 59388bdff64SToby Isaac } 59488bdff64SToby Isaac 59562e5d2d2SJDBetteridge /* Generic wrapper for DMCountNonCyclicReferences_Internal() */ 59662e5d2d2SJDBetteridge PetscErrorCode DMCountNonCyclicReferences(PetscObject dm, PetscInt *ncrefct) 59762e5d2d2SJDBetteridge { 59862e5d2d2SJDBetteridge PetscFunctionBegin; 59962e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal((DM)dm, PETSC_TRUE, PETSC_TRUE, ncrefct)); 6003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 60162e5d2d2SJDBetteridge } 60262e5d2d2SJDBetteridge 603d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyLabelLinkList_Internal(DM dm) 604d71ae5a4SJacob Faibussowitsch { 6055d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 606354557abSToby Isaac 607354557abSToby Isaac PetscFunctionBegin; 608354557abSToby Isaac /* destroy the labels */ 609354557abSToby Isaac while (next) { 610354557abSToby Isaac DMLabelLink tmp = next->next; 611354557abSToby Isaac 6125d80c0bfSVaclav Hapla if (next->label == dm->depthLabel) dm->depthLabel = NULL; 613ba2698f1SMatthew G. Knepley if (next->label == dm->celltypeLabel) dm->celltypeLabel = NULL; 6149566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 6159566063dSJacob Faibussowitsch PetscCall(PetscFree(next)); 616354557abSToby Isaac next = tmp; 617354557abSToby Isaac } 6185d80c0bfSVaclav Hapla dm->labels = NULL; 6193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 620354557abSToby Isaac } 621354557abSToby Isaac 62266976f2fSJacob Faibussowitsch static PetscErrorCode DMDestroyCoordinates_Private(DMCoordinates *c) 623d71ae5a4SJacob Faibussowitsch { 6246858538eSMatthew G. Knepley PetscFunctionBegin; 6256858538eSMatthew G. Knepley c->dim = PETSC_DEFAULT; 6266858538eSMatthew G. Knepley PetscCall(DMDestroy(&c->dm)); 6276858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->x)); 6286858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->xl)); 6296858538eSMatthew G. Knepley PetscCall(DMFieldDestroy(&c->field)); 6303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6316858538eSMatthew G. Knepley } 6326858538eSMatthew G. Knepley 6330764c050SBarry Smith /*@ 634bb7acecfSBarry Smith DMDestroy - Destroys a `DM`. 63547c6ae99SBarry Smith 63620f4b53cSBarry Smith Collective 63747c6ae99SBarry Smith 63847c6ae99SBarry Smith Input Parameter: 639bb7acecfSBarry Smith . dm - the `DM` object to destroy 64047c6ae99SBarry Smith 64147c6ae99SBarry Smith Level: developer 64247c6ae99SBarry Smith 6431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMType`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 64447c6ae99SBarry Smith @*/ 645d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroy(DM *dm) 646d71ae5a4SJacob Faibussowitsch { 6476eb26441SStefano Zampini PetscInt cnt; 64847c6ae99SBarry Smith 64947c6ae99SBarry Smith PetscFunctionBegin; 6503ba16761SJacob Faibussowitsch if (!*dm) PetscFunctionReturn(PETSC_SUCCESS); 651f4f49eeaSPierre Jolivet PetscValidHeaderSpecific(*dm, DM_CLASSID, 1); 65287e657c6SBarry Smith 65388bdff64SToby Isaac /* count all non-cyclic references in the doubly-linked list of coarse<->fine meshes */ 65462e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(*dm, PETSC_TRUE, PETSC_TRUE, &cnt)); 655f4f49eeaSPierre Jolivet --((PetscObject)*dm)->refct; 6569371c9d4SSatish Balay if (--cnt > 0) { 6579371c9d4SSatish Balay *dm = NULL; 6583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6599371c9d4SSatish Balay } 660f4f49eeaSPierre Jolivet if (((PetscObject)*dm)->refct < 0) PetscFunctionReturn(PETSC_SUCCESS); 661f4f49eeaSPierre Jolivet ((PetscObject)*dm)->refct = 0; 6626eb26441SStefano Zampini 6639566063dSJacob Faibussowitsch PetscCall(DMClearGlobalVectors(*dm)); 6649566063dSJacob Faibussowitsch PetscCall(DMClearLocalVectors(*dm)); 665974ca4ecSStefano Zampini PetscCall(DMClearNamedGlobalVectors(*dm)); 666974ca4ecSStefano Zampini PetscCall(DMClearNamedLocalVectors(*dm)); 6672348bcf4SPeter Brune 668b17ce1afSJed Brown /* Destroy the list of hooks */ 669c833c3b5SJed Brown { 670c833c3b5SJed Brown DMCoarsenHookLink link, next; 671b17ce1afSJed Brown for (link = (*dm)->coarsenhook; link; link = next) { 672b17ce1afSJed Brown next = link->next; 6739566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 674b17ce1afSJed Brown } 6750298fd71SBarry Smith (*dm)->coarsenhook = NULL; 676c833c3b5SJed Brown } 677c833c3b5SJed Brown { 678c833c3b5SJed Brown DMRefineHookLink link, next; 679c833c3b5SJed Brown for (link = (*dm)->refinehook; link; link = next) { 680c833c3b5SJed Brown next = link->next; 6819566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 682c833c3b5SJed Brown } 6830298fd71SBarry Smith (*dm)->refinehook = NULL; 684c833c3b5SJed Brown } 685be081cd6SPeter Brune { 686be081cd6SPeter Brune DMSubDomainHookLink link, next; 687be081cd6SPeter Brune for (link = (*dm)->subdomainhook; link; link = next) { 688be081cd6SPeter Brune next = link->next; 6899566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 690be081cd6SPeter Brune } 6910298fd71SBarry Smith (*dm)->subdomainhook = NULL; 692be081cd6SPeter Brune } 693baf369e7SPeter Brune { 694baf369e7SPeter Brune DMGlobalToLocalHookLink link, next; 695baf369e7SPeter Brune for (link = (*dm)->gtolhook; link; link = next) { 696baf369e7SPeter Brune next = link->next; 6979566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 698baf369e7SPeter Brune } 6990298fd71SBarry Smith (*dm)->gtolhook = NULL; 700baf369e7SPeter Brune } 701d4d07f1eSToby Isaac { 702d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, next; 703d4d07f1eSToby Isaac for (link = (*dm)->ltoghook; link; link = next) { 704d4d07f1eSToby Isaac next = link->next; 7059566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 706d4d07f1eSToby Isaac } 707d4d07f1eSToby Isaac (*dm)->ltoghook = NULL; 708d4d07f1eSToby Isaac } 709aa1993deSMatthew G Knepley /* Destroy the work arrays */ 710aa1993deSMatthew G Knepley { 711aa1993deSMatthew G Knepley DMWorkLink link, next; 712835f2295SStefano Zampini PetscCheck(!(*dm)->workout, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Work array still checked out %p %p", (void *)(*dm)->workout, (*dm)->workout->mem); 713aa1993deSMatthew G Knepley for (link = (*dm)->workin; link; link = next) { 714aa1993deSMatthew G Knepley next = link->next; 7159566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 7169566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 717aa1993deSMatthew G Knepley } 7180298fd71SBarry Smith (*dm)->workin = NULL; 719aa1993deSMatthew G Knepley } 720c58f1c22SToby Isaac /* destroy the labels */ 7219566063dSJacob Faibussowitsch PetscCall(DMDestroyLabelLinkList_Internal(*dm)); 722f4cdcedcSVaclav Hapla /* destroy the fields */ 7239566063dSJacob Faibussowitsch PetscCall(DMClearFields(*dm)); 724f4cdcedcSVaclav Hapla /* destroy the boundaries */ 725e6f8dbb6SToby Isaac { 726e6f8dbb6SToby Isaac DMBoundary next = (*dm)->boundary; 727e6f8dbb6SToby Isaac while (next) { 728e6f8dbb6SToby Isaac DMBoundary b = next; 729e6f8dbb6SToby Isaac 730e6f8dbb6SToby Isaac next = b->next; 7319566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 732e6f8dbb6SToby Isaac } 733e6f8dbb6SToby Isaac } 734b17ce1afSJed Brown 7359566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmksp)); 7369566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmsnes)); 7379566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmts)); 73852536dc3SBarry Smith 73948a46eb9SPierre Jolivet if ((*dm)->ctx && (*dm)->ctxdestroy) PetscCall((*(*dm)->ctxdestroy)(&(*dm)->ctx)); 7409566063dSJacob Faibussowitsch PetscCall(MatFDColoringDestroy(&(*dm)->fd)); 7419566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&(*dm)->ltogmap)); 7429566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->vectype)); 7439566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->mattype)); 74488ed4aceSMatthew G Knepley 7459566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->localSection)); 7469566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->globalSection)); 747adc21957SMatthew G. Knepley PetscCall(PetscFree((*dm)->reorderSectionType)); 7489566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&(*dm)->map)); 7499566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->defaultConstraint.section)); 7509566063dSJacob Faibussowitsch PetscCall(MatDestroy(&(*dm)->defaultConstraint.mat)); 7519566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sf)); 7529566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sectionSF)); 75348a46eb9SPierre Jolivet if ((*dm)->sfNatural) PetscCall(PetscSFDestroy(&(*dm)->sfNatural)); 7549566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)(*dm)->sfMigration)); 755e4d5475eSStefano Zampini PetscCall(DMClearAuxiliaryVec(*dm)); 7569566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDestroy(&(*dm)->auxData)); 75748a46eb9SPierre Jolivet if ((*dm)->coarseMesh && (*dm)->coarseMesh->fineMesh == *dm) PetscCall(DMSetFineDM((*dm)->coarseMesh, NULL)); 7586eb26441SStefano Zampini 7599566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->coarseMesh)); 76048a46eb9SPierre Jolivet if ((*dm)->fineMesh && (*dm)->fineMesh->coarseMesh == *dm) PetscCall(DMSetCoarseDM((*dm)->fineMesh, NULL)); 7619566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->fineMesh)); 7624fb89dddSMatthew G. Knepley PetscCall(PetscFree((*dm)->Lstart)); 7639566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->L)); 7649566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->maxCell)); 7656858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[0])); 7666858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[1])); 7679566063dSJacob Faibussowitsch if ((*dm)->transformDestroy) PetscCall((*(*dm)->transformDestroy)(*dm, (*dm)->transformCtx)); 7689566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->transformDM)); 7699566063dSJacob Faibussowitsch PetscCall(VecDestroy(&(*dm)->transform)); 770ddedc8f6SJames Wright for (PetscInt i = 0; i < (*dm)->periodic.num_affines; i++) { 771ddedc8f6SJames Wright PetscCall(VecScatterDestroy(&(*dm)->periodic.affine_to_local[i])); 772ddedc8f6SJames Wright PetscCall(VecDestroy(&(*dm)->periodic.affine[i])); 773ddedc8f6SJames Wright } 774ddedc8f6SJames Wright if ((*dm)->periodic.num_affines > 0) PetscCall(PetscFree2((*dm)->periodic.affine_to_local, (*dm)->periodic.affine)); 7756636e97aSMatthew G Knepley 7769566063dSJacob Faibussowitsch PetscCall(DMClearDS(*dm)); 7779566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->dmBC)); 778e04113cfSBarry Smith /* if memory was published with SAWs then destroy it */ 7799566063dSJacob Faibussowitsch PetscCall(PetscObjectSAWsViewOff((PetscObject)*dm)); 780732e2eb9SMatthew G Knepley 781213acdd3SPierre Jolivet PetscTryTypeMethod(*dm, destroy); 7829566063dSJacob Faibussowitsch PetscCall(DMMonitorCancel(*dm)); 783d2b2dc1eSMatthew G. Knepley PetscCall(DMCeedDestroy(&(*dm)->dmceed)); 784f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 7859566063dSJacob Faibussowitsch PetscCallCEED(CeedElemRestrictionDestroy(&(*dm)->ceedERestrict)); 7869566063dSJacob Faibussowitsch PetscCallCEED(CeedDestroy(&(*dm)->ceed)); 787f918ec44SMatthew G. Knepley #endif 788435a35e8SMatthew G Knepley /* We do not destroy (*dm)->data here so that we can reference count backend objects */ 7899566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(dm)); 7903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 79147c6ae99SBarry Smith } 79247c6ae99SBarry Smith 793d7bf68aeSBarry Smith /*@ 794bb7acecfSBarry Smith DMSetUp - sets up the data structures inside a `DM` object 795d7bf68aeSBarry Smith 79620f4b53cSBarry Smith Collective 797d7bf68aeSBarry Smith 798d7bf68aeSBarry Smith Input Parameter: 799bb7acecfSBarry Smith . dm - the `DM` object to setup 800d7bf68aeSBarry Smith 801bb7acecfSBarry Smith Level: intermediate 802d7bf68aeSBarry Smith 803bb7acecfSBarry Smith Note: 804bb7acecfSBarry Smith This is usually called after various parameter setting operations and `DMSetFromOptions()` are called on the `DM` 805bb7acecfSBarry Smith 8061cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 807d7bf68aeSBarry Smith @*/ 808d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUp(DM dm) 809d71ae5a4SJacob Faibussowitsch { 810d7bf68aeSBarry Smith PetscFunctionBegin; 811171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8123ba16761SJacob Faibussowitsch if (dm->setupcalled) PetscFunctionReturn(PETSC_SUCCESS); 813dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setup); 8148387afaaSJed Brown dm->setupcalled = PETSC_TRUE; 8153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 816d7bf68aeSBarry Smith } 817d7bf68aeSBarry Smith 818d7bf68aeSBarry Smith /*@ 819bb7acecfSBarry Smith DMSetFromOptions - sets parameters in a `DM` from the options database 820d7bf68aeSBarry Smith 82120f4b53cSBarry Smith Collective 822d7bf68aeSBarry Smith 823d7bf68aeSBarry Smith Input Parameter: 824bb7acecfSBarry Smith . dm - the `DM` object to set options for 825d7bf68aeSBarry Smith 82620f4b53cSBarry Smith Options Database Keys: 827bb7acecfSBarry Smith + -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 828bb7acecfSBarry Smith . -dm_vec_type <type> - type of vector to create inside `DM` 829bb7acecfSBarry Smith . -dm_mat_type <type> - type of matrix to create inside `DM` 830a4ea9b21SRichard Tran Mills . -dm_is_coloring_type - <global or local> 83120f4b53cSBarry Smith . -dm_bind_below <n> - bind (force execution on CPU) for `Vec` and `Mat` objects with local size (number of vector entries or matrix rows) below n; currently only supported for `DMDA` 83222d6dc08SStefano Zampini . -dm_plex_option_phases <ph0_, ph1_, ...> - List of prefixes for option processing phases 83320f4b53cSBarry Smith . -dm_plex_filename <str> - File containing a mesh 8349318fe57SMatthew G. Knepley . -dm_plex_boundary_filename <str> - File containing a mesh boundary 835cd7e8a5eSksagiyam . -dm_plex_name <str> - Name of the mesh in the file 8365dca41c3SJed Brown . -dm_plex_shape <shape> - The domain shape, such as `BOX`, `SPHERE`, etc. 8379318fe57SMatthew G. Knepley . -dm_plex_cell <ct> - Cell shape 8389318fe57SMatthew G. Knepley . -dm_plex_reference_cell_domain <bool> - Use a reference cell domain 8399318fe57SMatthew G. Knepley . -dm_plex_dim <dim> - Set the topological dimension 840bb7acecfSBarry Smith . -dm_plex_simplex <bool> - `PETSC_TRUE` for simplex elements, `PETSC_FALSE` for tensor elements 841bb7acecfSBarry Smith . -dm_plex_interpolate <bool> - `PETSC_TRUE` turns on topological interpolation (creating edges and faces) 842b9da1bb3SMatthew G. Knepley . -dm_plex_orient <bool> - `PETSC_TRUE` turns on topological orientation (flipping edges and faces) 8439318fe57SMatthew G. Knepley . -dm_plex_scale <sc> - Scale factor for mesh coordinates 844be664eb1SMatthew G. Knepley . -dm_coord_remap <bool> - Map coordinates using a function 845ac9d17c7SMatthew G. Knepley . -dm_plex_coordinate_dim <dim> - Change the coordinate dimension of a mesh (usually given with cdm_ prefix) 846be664eb1SMatthew G. Knepley . -dm_coord_map <mapname> - Select a builtin coordinate map 847be664eb1SMatthew G. Knepley . -dm_coord_map_params <p0,p1,p2,...> - Set coordinate mapping parameters 8489318fe57SMatthew G. Knepley . -dm_plex_box_faces <m,n,p> - Number of faces along each dimension 8499318fe57SMatthew G. Knepley . -dm_plex_box_lower <x,y,z> - Specify lower-left-bottom coordinates for the box 8509318fe57SMatthew G. Knepley . -dm_plex_box_upper <x,y,z> - Specify upper-right-top coordinates for the box 851bb7acecfSBarry Smith . -dm_plex_box_bd <bx,by,bz> - Specify the `DMBoundaryType` for each direction 8529318fe57SMatthew G. Knepley . -dm_plex_sphere_radius <r> - The sphere radius 8539318fe57SMatthew G. Knepley . -dm_plex_ball_radius <r> - Radius of the ball 8549318fe57SMatthew G. Knepley . -dm_plex_cylinder_bd <bz> - Boundary type in the z direction 8559318fe57SMatthew G. Knepley . -dm_plex_cylinder_num_wedges <n> - Number of wedges around the cylinder 856bdf63967SMatthew G. Knepley . -dm_plex_reorder <order> - Reorder the mesh using the specified algorithm 8579318fe57SMatthew G. Knepley . -dm_refine_pre <n> - The number of refinements before distribution 8589318fe57SMatthew G. Knepley . -dm_refine_uniform_pre <bool> - Flag for uniform refinement before distribution 8599318fe57SMatthew G. Knepley . -dm_refine_volume_limit_pre <v> - The maximum cell volume after refinement before distribution 8609318fe57SMatthew G. Knepley . -dm_refine <n> - The number of refinements after distribution 861bdf63967SMatthew G. Knepley . -dm_extrude <l> - Activate extrusion and specify the number of layers to extrude 86261f058f9SMatthew G. Knepley . -dm_plex_save_transform <bool> - Save the `DMPlexTransform` that produced this mesh 863d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thickness <t> - The total thickness of extruded layers 864d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_use_tensor <bool> - Use tensor cells when extruding 865d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_symmetric <bool> - Extrude layers symmetrically about the surface 866d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_normal <n0,...,nd> - Specify the extrusion direction 867d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thicknesses <t0,...,tl> - Specify thickness of each layer 868909dfd52SMatthew G. Knepley . -dm_plex_create_fv_ghost_cells - Flag to create finite volume ghost cells on the boundary 869909dfd52SMatthew G. Knepley . -dm_plex_fv_ghost_cells_label <name> - Label name for ghost cells boundary 8709318fe57SMatthew G. Knepley . -dm_distribute <bool> - Flag to redistribute a mesh among processes 8719318fe57SMatthew G. Knepley . -dm_distribute_overlap <n> - The size of the overlap halo 8729318fe57SMatthew G. Knepley . -dm_plex_adj_cone <bool> - Set adjacency direction 87320f4b53cSBarry Smith . -dm_plex_adj_closure <bool> - Set adjacency size 874d2b2dc1eSMatthew G. Knepley . -dm_plex_use_ceed <bool> - Use LibCEED as the FEM backend 87520f4b53cSBarry Smith . -dm_plex_check_symmetry - Check that the adjacency information in the mesh is symmetric - `DMPlexCheckSymmetry()` 876bb7acecfSBarry Smith . -dm_plex_check_skeleton - Check that each cell has the correct number of vertices (only for homogeneous simplex or tensor meshes) - `DMPlexCheckSkeleton()` 877bb7acecfSBarry Smith . -dm_plex_check_faces - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type - `DMPlexCheckFaces()` 878bb7acecfSBarry Smith . -dm_plex_check_geometry - Check that cells have positive volume - `DMPlexCheckGeometry()` 879bb7acecfSBarry Smith . -dm_plex_check_pointsf - Check some necessary conditions for `PointSF` - `DMPlexCheckPointSF()` 880bb7acecfSBarry Smith . -dm_plex_check_interface_cones - Check points on inter-partition interfaces have conforming order of cone points - `DMPlexCheckInterfaceCones()` 881384a6580SVaclav Hapla - -dm_plex_check_all - Perform all the checks above 882d7bf68aeSBarry Smith 88395eb5ee5SVaclav Hapla Level: intermediate 88495eb5ee5SVaclav Hapla 8858e704042SBarry Smith Note: 8868e704042SBarry Smith For some `DMType` such as `DMDA` this cannot be called after `DMSetUp()` has been called. 8878e704042SBarry Smith 8881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 889bb7acecfSBarry Smith `DMPlexCheckSymmetry()`, `DMPlexCheckSkeleton()`, `DMPlexCheckFaces()`, `DMPlexCheckGeometry()`, `DMPlexCheckPointSF()`, `DMPlexCheckInterfaceCones()`, 8908e704042SBarry Smith `DMSetOptionsPrefix()`, `DMType`, `DMPLEX`, `DMDA`, `DMSetUp()` 891d7bf68aeSBarry Smith @*/ 892d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFromOptions(DM dm) 893d71ae5a4SJacob Faibussowitsch { 8947781c08eSBarry Smith char typeName[256]; 895ca266f36SBarry Smith PetscBool flg; 896d7bf68aeSBarry Smith 897d7bf68aeSBarry Smith PetscFunctionBegin; 898171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 89949be4549SMatthew G. Knepley dm->setfromoptionscalled = PETSC_TRUE; 9009566063dSJacob Faibussowitsch if (dm->sf) PetscCall(PetscSFSetFromOptions(dm->sf)); 9019566063dSJacob Faibussowitsch if (dm->sectionSF) PetscCall(PetscSFSetFromOptions(dm->sectionSF)); 902dd4c3f67SMatthew G. Knepley if (dm->coordinates[0].dm) PetscCall(DMSetFromOptions(dm->coordinates[0].dm)); 903d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)dm); 9049566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_preallocate_only", "only preallocate matrix, but do not set column indices", "DMSetMatrixPreallocateOnly", dm->prealloc_only, &dm->prealloc_only, NULL)); 9059566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_vec_type", "Vector type used for created vectors", "DMSetVecType", VecList, dm->vectype, typeName, 256, &flg)); 9061baa6e33SBarry Smith if (flg) PetscCall(DMSetVecType(dm, typeName)); 9079566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_mat_type", "Matrix type used for created matrices", "DMSetMatType", MatList, dm->mattype ? dm->mattype : typeName, typeName, sizeof(typeName), &flg)); 9081baa6e33SBarry Smith if (flg) PetscCall(DMSetMatType(dm, typeName)); 909863027abSJed Brown PetscCall(PetscOptionsEnum("-dm_blocking_type", "Topological point or field node blocking", "DMSetBlockingType", DMBlockingTypes, (PetscEnum)dm->blocking_type, (PetscEnum *)&dm->blocking_type, NULL)); 9109566063dSJacob Faibussowitsch PetscCall(PetscOptionsEnum("-dm_is_coloring_type", "Global or local coloring of Jacobian", "DMSetISColoringType", ISColoringTypes, (PetscEnum)dm->coloringtype, (PetscEnum *)&dm->coloringtype, NULL)); 9119566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-dm_bind_below", "Set the size threshold (in entries) below which the Vec is bound to the CPU", "VecBindToCPU", dm->bind_below, &dm->bind_below, &flg)); 912eb9d3e4dSMatthew G. Knepley PetscCall(PetscOptionsBool("-dm_ignore_perm_output", "Ignore the local section permutation on output", "DMGetOutputDM", dm->ignorePermOutput, &dm->ignorePermOutput, NULL)); 913dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setfromoptions, PetscOptionsObject); 914f9ba7244SBarry Smith /* process any options handlers added with PetscObjectAddOptionsHandler() */ 915dbbe0bcdSBarry Smith PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)dm, PetscOptionsObject)); 916d0609cedSBarry Smith PetscOptionsEnd(); 9173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 918d7bf68aeSBarry Smith } 919d7bf68aeSBarry Smith 920ffeef943SBarry Smith /*@ 921bb7acecfSBarry Smith DMViewFromOptions - View a `DM` in a particular way based on a request in the options database 922fe2efc57SMark 92320f4b53cSBarry Smith Collective 924fe2efc57SMark 925fe2efc57SMark Input Parameters: 926bb7acecfSBarry Smith + dm - the `DM` object 927ce78bad3SBarry Smith . obj - optional object that provides the prefix for the options database (if `NULL` then the prefix in `obj` is used) 92860225df5SJacob Faibussowitsch - name - option string that is used to activate viewing 929fe2efc57SMark 930fe2efc57SMark Level: intermediate 931bb7acecfSBarry Smith 932bb7acecfSBarry Smith Note: 933bb7acecfSBarry Smith See `PetscObjectViewFromOptions()` for a list of values that can be provided in the options database to determine how the `DM` is viewed 934bb7acecfSBarry Smith 93560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `PetscObjectViewFromOptions()`, `DMCreate()` 936fe2efc57SMark @*/ 937ce78bad3SBarry Smith PetscErrorCode DMViewFromOptions(DM dm, PeOp PetscObject obj, const char name[]) 938d71ae5a4SJacob Faibussowitsch { 939fe2efc57SMark PetscFunctionBegin; 940fe2efc57SMark PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9419566063dSJacob Faibussowitsch PetscCall(PetscObjectViewFromOptions((PetscObject)dm, obj, name)); 9423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 943fe2efc57SMark } 944fe2efc57SMark 945ffeef943SBarry Smith /*@ 946bb7acecfSBarry Smith DMView - Views a `DM`. Depending on the `PetscViewer` and its `PetscViewerFormat` it may print some ASCII information about the `DM` to the screen or a file or 947bb7acecfSBarry Smith save the `DM` in a binary file to be loaded later or create a visualization of the `DM` 94847c6ae99SBarry Smith 94920f4b53cSBarry Smith Collective 95047c6ae99SBarry Smith 951d8d19677SJose E. Roman Input Parameters: 952bb7acecfSBarry Smith + dm - the `DM` object to view 95347c6ae99SBarry Smith - v - the viewer 95447c6ae99SBarry Smith 955c8a418c4SMatthew G. Knepley Options Database Keys: 956c8a418c4SMatthew G. Knepley + -view_pyvista_warp <f> - Warps the mesh by the active scalar with factor f 957*a36b0f0fSMatthew G. Knepley . -view_pyvista_clip <xl,xu,yl,yu,zl,zu> - Defines the clipping box 958*a36b0f0fSMatthew G. Knepley . -dm_view_draw_line_color <int> - Specify the X-window color for cell borders 959*a36b0f0fSMatthew G. Knepley . -dm_view_draw_cell_color <int> - Specify the X-window color for cells 960*a36b0f0fSMatthew G. Knepley - -dm_view_draw_affine <bool> - Flag to ignore high-order edges 961c8a418c4SMatthew G. Knepley 96220f4b53cSBarry Smith Level: beginner 96320f4b53cSBarry Smith 96449c89c76SBlaise Bourdin Notes: 96549c89c76SBlaise Bourdin 96649c89c76SBlaise Bourdin `PetscViewer` = `PETSCVIEWERHDF5` i.e. HDF5 format can be used with `PETSC_VIEWER_HDF5_PETSC` as the `PetscViewerFormat` to save multiple `DMPLEX` 967bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 968bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 969cd7e8a5eSksagiyam 97049c89c76SBlaise Bourdin `PetscViewer` = `PETSCVIEWEREXODUSII` i.e. ExodusII format assumes that element blocks (mapped to "Cell sets" labels) 97149c89c76SBlaise Bourdin consists of sequentially numbered cells. 97249c89c76SBlaise Bourdin 97349c89c76SBlaise Bourdin If `dm` has been distributed, only the part of the `DM` on MPI rank 0 (including "ghost" cells and vertices) will be written. 97449c89c76SBlaise Bourdin 975c8a418c4SMatthew G. Knepley Only TRI, TET, QUAD, and HEX cells are supported in ExodusII. 97649c89c76SBlaise Bourdin 97749c89c76SBlaise Bourdin `DMPLEX` only represents geometry while most post-processing software expect that a mesh also provides information on the discretization space. This function assumes that the file represents Lagrange finite elements of order 1 or 2. 97849c89c76SBlaise Bourdin The order of the mesh shall be set using `PetscViewerExodusIISetOrder()` 97949c89c76SBlaise Bourdin 980d7c1f440SPierre Jolivet Variable names can be set and queried using `PetscViewerExodusII[Set/Get][Nodal/Zonal]VariableNames[s]`. 98149c89c76SBlaise Bourdin 9821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewer`, `PetscViewerFormat`, `PetscViewerSetFormat()`, `DMDestroy()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMLoad()`, `PetscObjectSetName()` 98347c6ae99SBarry Smith @*/ 984d71ae5a4SJacob Faibussowitsch PetscErrorCode DMView(DM dm, PetscViewer v) 985d71ae5a4SJacob Faibussowitsch { 98632c0f0efSBarry Smith PetscBool isbinary; 98776a8abe0SBarry Smith PetscMPIInt size; 98876a8abe0SBarry Smith PetscViewerFormat format; 98947c6ae99SBarry Smith 99047c6ae99SBarry Smith PetscFunctionBegin; 991171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 99248a46eb9SPierre Jolivet if (!v) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &v)); 993b1b135c8SBarry Smith PetscValidHeaderSpecific(v, PETSC_VIEWER_CLASSID, 2); 99474903a4fSStefano Zampini /* Ideally, we would like to have this test on. 99574903a4fSStefano Zampini However, it currently breaks socket viz via GLVis. 99674903a4fSStefano Zampini During DMView(parallel_mesh,glvis_viewer), each 99774903a4fSStefano Zampini process opens a sequential ASCII socket to visualize 99874903a4fSStefano Zampini the local mesh, and PetscObjectView(dm,local_socket) 99974903a4fSStefano Zampini is internally called inside VecView_GLVis, incurring 100074903a4fSStefano Zampini in an error here */ 100174903a4fSStefano Zampini /* PetscCheckSameComm(dm,1,v,2); */ 10029566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckWritable(v)); 1003b1b135c8SBarry Smith 100442d0c57aSJames Wright PetscCall(PetscLogEventBegin(DM_View, v, 0, 0, 0)); 10059566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(v, &format)); 10069566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 10073ba16761SJacob Faibussowitsch if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(PETSC_SUCCESS); 10089566063dSJacob Faibussowitsch PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)dm, v)); 10099566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)v, PETSCVIEWERBINARY, &isbinary)); 101032c0f0efSBarry Smith if (isbinary) { 101155849f57SBarry Smith PetscInt classid = DM_FILE_CLASSID; 101232c0f0efSBarry Smith char type[256]; 101332c0f0efSBarry Smith 10149566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, &classid, 1, PETSC_INT)); 1015c6a7a370SJeremy L Thompson PetscCall(PetscStrncpy(type, ((PetscObject)dm)->type_name, sizeof(type))); 10169566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, type, 256, PETSC_CHAR)); 101732c0f0efSBarry Smith } 1018dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, view, v); 101942d0c57aSJames Wright PetscCall(PetscLogEventEnd(DM_View, v, 0, 0, 0)); 10203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 102147c6ae99SBarry Smith } 102247c6ae99SBarry Smith 102347c6ae99SBarry Smith /*@ 1024bb7acecfSBarry Smith DMCreateGlobalVector - Creates a global vector from a `DM` object. A global vector is a parallel vector that has no duplicate values shared between MPI ranks, 1025bb7acecfSBarry Smith that is it has no ghost locations. 102647c6ae99SBarry Smith 102720f4b53cSBarry Smith Collective 102847c6ae99SBarry Smith 102947c6ae99SBarry Smith Input Parameter: 1030bb7acecfSBarry Smith . dm - the `DM` object 103147c6ae99SBarry Smith 103247c6ae99SBarry Smith Output Parameter: 103347c6ae99SBarry Smith . vec - the global vector 103447c6ae99SBarry Smith 1035073dac72SJed Brown Level: beginner 103647c6ae99SBarry Smith 10371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1038bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 103947c6ae99SBarry Smith @*/ 1040d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateGlobalVector(DM dm, Vec *vec) 1041d71ae5a4SJacob Faibussowitsch { 104247c6ae99SBarry Smith PetscFunctionBegin; 1043171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10444f572ea9SToby Isaac PetscAssertPointer(vec, 2); 1045dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createglobalvector, vec); 104676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1047c6b011d8SStefano Zampini DM vdm; 1048c6b011d8SStefano Zampini 10499566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10507a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1051c6b011d8SStefano Zampini } 10523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 105347c6ae99SBarry Smith } 105447c6ae99SBarry Smith 105547c6ae99SBarry Smith /*@ 1056bb7acecfSBarry Smith DMCreateLocalVector - Creates a local vector from a `DM` object. 105747c6ae99SBarry Smith 105847c6ae99SBarry Smith Not Collective 105947c6ae99SBarry Smith 106047c6ae99SBarry Smith Input Parameter: 1061bb7acecfSBarry Smith . dm - the `DM` object 106247c6ae99SBarry Smith 106347c6ae99SBarry Smith Output Parameter: 106447c6ae99SBarry Smith . vec - the local vector 106547c6ae99SBarry Smith 1066073dac72SJed Brown Level: beginner 106747c6ae99SBarry Smith 106820f4b53cSBarry Smith Note: 1069bb7acecfSBarry Smith A local vector usually has ghost locations that contain values that are owned by different MPI ranks. A global vector has no ghost locations. 1070bb7acecfSBarry Smith 10711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 1072bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 107347c6ae99SBarry Smith @*/ 1074d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLocalVector(DM dm, Vec *vec) 1075d71ae5a4SJacob Faibussowitsch { 107647c6ae99SBarry Smith PetscFunctionBegin; 1077171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10784f572ea9SToby Isaac PetscAssertPointer(vec, 2); 1079dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalvector, vec); 108076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1081c6b011d8SStefano Zampini DM vdm; 1082c6b011d8SStefano Zampini 10839566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10847a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_LIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1085c6b011d8SStefano Zampini } 10863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 108747c6ae99SBarry Smith } 108847c6ae99SBarry Smith 10891411c6eeSJed Brown /*@ 1090bb7acecfSBarry Smith DMGetLocalToGlobalMapping - Accesses the local-to-global mapping in a `DM`. 10911411c6eeSJed Brown 109220f4b53cSBarry Smith Collective 10931411c6eeSJed Brown 10941411c6eeSJed Brown Input Parameter: 1095bb7acecfSBarry Smith . dm - the `DM` that provides the mapping 10961411c6eeSJed Brown 10971411c6eeSJed Brown Output Parameter: 10981411c6eeSJed Brown . ltog - the mapping 10991411c6eeSJed Brown 1100bb7acecfSBarry Smith Level: advanced 11011411c6eeSJed Brown 11021411c6eeSJed Brown Notes: 1103bb7acecfSBarry Smith The global to local mapping allows one to set values into the global vector or matrix using `VecSetValuesLocal()` and `MatSetValuesLocal()` 11041411c6eeSJed Brown 1105bb7acecfSBarry Smith Vectors obtained with `DMCreateGlobalVector()` and matrices obtained with `DMCreateMatrix()` already contain the global mapping so you do 1106bb7acecfSBarry Smith need to use this function with those objects. 1107bb7acecfSBarry Smith 1108bb7acecfSBarry Smith This mapping can then be used by `VecSetLocalToGlobalMapping()` or `MatSetLocalToGlobalMapping()`. 1109bb7acecfSBarry Smith 111060225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `VecSetLocalToGlobalMapping()`, `MatSetLocalToGlobalMapping()`, 1111bb7acecfSBarry Smith `DMCreateMatrix()` 11121411c6eeSJed Brown @*/ 1113d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalToGlobalMapping(DM dm, ISLocalToGlobalMapping *ltog) 1114d71ae5a4SJacob Faibussowitsch { 11150be3e97aSMatthew G. Knepley PetscInt bs = -1, bsLocal[2], bsMinMax[2]; 11161411c6eeSJed Brown 11171411c6eeSJed Brown PetscFunctionBegin; 11181411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11194f572ea9SToby Isaac PetscAssertPointer(ltog, 2); 11201411c6eeSJed Brown if (!dm->ltogmap) { 112137d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 112237d0c07bSMatthew G Knepley 11239566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 112437d0c07bSMatthew G Knepley if (section) { 1125a974ec88SMatthew G. Knepley const PetscInt *cdofs; 112637d0c07bSMatthew G Knepley PetscInt *ltog; 1127ccf3bd66SMatthew G. Knepley PetscInt pStart, pEnd, n, p, k, l; 112837d0c07bSMatthew G Knepley 11299566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 11309566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 11319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(section, &n)); 11329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, <og)); /* We want the local+overlap size */ 113337d0c07bSMatthew G Knepley for (p = pStart, l = 0; p < pEnd; ++p) { 1134e6befd46SJed Brown PetscInt bdof, cdof, dof, off, c, cind; 113537d0c07bSMatthew G Knepley 113637d0c07bSMatthew G Knepley /* Should probably use constrained dofs */ 11379566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, p, &dof)); 11389566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(section, p, &cdof)); 11399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(section, p, &cdofs)); 11409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &off)); 11411a7dc684SMatthew G. Knepley /* If you have dofs, and constraints, and they are unequal, we set the blocksize to 1 */ 11421a7dc684SMatthew G. Knepley bdof = cdof && (dof - cdof) ? 1 : dof; 1143ad540459SPierre Jolivet if (dof) bs = bs < 0 ? bdof : PetscGCD(bs, bdof); 11445227eafbSStefano Zampini 1145e6befd46SJed Brown for (c = 0, cind = 0; c < dof; ++c, ++l) { 11465227eafbSStefano Zampini if (cind < cdof && c == cdofs[cind]) { 1147e6befd46SJed Brown ltog[l] = off < 0 ? off - c : -(off + c + 1); 1148e6befd46SJed Brown cind++; 1149e6befd46SJed Brown } else { 11505227eafbSStefano Zampini ltog[l] = (off < 0 ? -(off + 1) : off) + c - cind; 1151e6befd46SJed Brown } 115237d0c07bSMatthew G Knepley } 115337d0c07bSMatthew G Knepley } 1154bff27382SMatthew G. Knepley /* Must have same blocksize on all procs (some might have no points) */ 11551690c2aeSBarry Smith bsLocal[0] = bs < 0 ? PETSC_INT_MAX : bs; 11569371c9d4SSatish Balay bsLocal[1] = bs; 11579566063dSJacob Faibussowitsch PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)dm), bsLocal, bsMinMax)); 11589371c9d4SSatish Balay if (bsMinMax[0] != bsMinMax[1]) { 11599371c9d4SSatish Balay bs = 1; 11609371c9d4SSatish Balay } else { 11619371c9d4SSatish Balay bs = bsMinMax[0]; 11629371c9d4SSatish Balay } 11637591dbb2SMatthew G. Knepley bs = bs < 0 ? 1 : bs; 11647591dbb2SMatthew G. Knepley /* Must reduce indices by blocksize */ 1165ccf3bd66SMatthew G. Knepley if (bs > 1) { 1166ca469d19SJed Brown for (l = 0, k = 0; l < n; l += bs, ++k) { 1167ca469d19SJed Brown // Integer division of negative values truncates toward zero(!), not toward negative infinity 1168ca469d19SJed Brown ltog[k] = ltog[l] >= 0 ? ltog[l] / bs : -(-(ltog[l] + 1) / bs + 1); 1169ca469d19SJed Brown } 1170ccf3bd66SMatthew G. Knepley n /= bs; 1171ccf3bd66SMatthew G. Knepley } 11729566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm), bs, n, ltog, PETSC_OWN_POINTER, &dm->ltogmap)); 1173dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, getlocaltoglobalmapping); 117437d0c07bSMatthew G Knepley } 11751411c6eeSJed Brown *ltog = dm->ltogmap; 11763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11771411c6eeSJed Brown } 11781411c6eeSJed Brown 11791411c6eeSJed Brown /*@ 1180bb7acecfSBarry Smith DMGetBlockSize - Gets the inherent block size associated with a `DM` 11811411c6eeSJed Brown 11821411c6eeSJed Brown Not Collective 11831411c6eeSJed Brown 11841411c6eeSJed Brown Input Parameter: 1185bb7acecfSBarry Smith . dm - the `DM` with block structure 11861411c6eeSJed Brown 11871411c6eeSJed Brown Output Parameter: 11881411c6eeSJed Brown . bs - the block size, 1 implies no exploitable block structure 11891411c6eeSJed Brown 11901411c6eeSJed Brown Level: intermediate 11911411c6eeSJed Brown 119273ff1848SBarry Smith Notes: 1193bb7acecfSBarry Smith This might be the number of degrees of freedom at each grid point for a structured grid. 1194bb7acecfSBarry Smith 1195bb7acecfSBarry Smith Complex `DM` that represent multiphysics or staggered grids or mixed-methods do not generally have a single inherent block size, but 1196bb7acecfSBarry Smith rather different locations in the vectors may have a different block size. 1197bb7acecfSBarry Smith 11981cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISCreateBlock()`, `VecSetBlockSize()`, `MatSetBlockSize()`, `DMGetLocalToGlobalMapping()` 11991411c6eeSJed Brown @*/ 1200d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBlockSize(DM dm, PetscInt *bs) 1201d71ae5a4SJacob Faibussowitsch { 12021411c6eeSJed Brown PetscFunctionBegin; 12031411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 12044f572ea9SToby Isaac PetscAssertPointer(bs, 2); 12057a8be351SBarry Smith PetscCheck(dm->bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM does not have enough information to provide a block size yet"); 12061411c6eeSJed Brown *bs = dm->bs; 12073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12081411c6eeSJed Brown } 12091411c6eeSJed Brown 1210ffeef943SBarry Smith /*@ 1211bb7acecfSBarry Smith DMCreateInterpolation - Gets the interpolation matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1212bb7acecfSBarry Smith `DMCreateGlobalVector()` on the coarse `DM` to similar vectors on the fine grid `DM`. 121347c6ae99SBarry Smith 121420f4b53cSBarry Smith Collective 121547c6ae99SBarry Smith 1216d8d19677SJose E. Roman Input Parameters: 1217bb7acecfSBarry Smith + dmc - the `DM` object 1218bb7acecfSBarry Smith - dmf - the second, finer `DM` object 121947c6ae99SBarry Smith 1220d8d19677SJose E. Roman Output Parameters: 122147c6ae99SBarry Smith + mat - the interpolation 1222b6971eaeSBarry Smith - vec - the scaling (optional, pass `NULL` if not needed), see `DMCreateInterpolationScale()` 122347c6ae99SBarry Smith 122447c6ae99SBarry Smith Level: developer 122547c6ae99SBarry Smith 122695452b02SPatrick Sanan Notes: 1227bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1228bb7acecfSBarry Smith DMCoarsen(). The coordinates set into the `DMDA` are completely ignored in computing the interpolation. 1229d52bd9f3SBarry Smith 1230bb7acecfSBarry Smith For `DMDA` objects you can use this interpolation (more precisely the interpolation from the `DMGetCoordinateDM()`) to interpolate the mesh coordinate 1231bb7acecfSBarry Smith vectors EXCEPT in the periodic case where it does not make sense since the coordinate vectors are not periodic. 123285afcc9aSBarry Smith 12331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolationScale()` 123447c6ae99SBarry Smith @*/ 1235d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolation(DM dmc, DM dmf, Mat *mat, Vec *vec) 1236d71ae5a4SJacob Faibussowitsch { 123747c6ae99SBarry Smith PetscFunctionBegin; 1238a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1239a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 12404f572ea9SToby Isaac PetscAssertPointer(mat, 3); 12419566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInterpolation, dmc, dmf, 0, 0)); 1242dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createinterpolation, dmf, mat, vec); 12439566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInterpolation, dmc, dmf, 0, 0)); 12443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 124547c6ae99SBarry Smith } 124647c6ae99SBarry Smith 12473ad4599aSBarry Smith /*@ 1248a4e35b19SJacob Faibussowitsch DMCreateInterpolationScale - Forms L = 1/(R*1) where 1 is the vector of all ones, and R is 1249a4e35b19SJacob Faibussowitsch the transpose of the interpolation between the `DM`. 12502ed6491fSPatrick Sanan 12512ed6491fSPatrick Sanan Input Parameters: 1252bb7acecfSBarry Smith + dac - `DM` that defines a coarse mesh 1253bb7acecfSBarry Smith . daf - `DM` that defines a fine mesh 12542ed6491fSPatrick Sanan - mat - the restriction (or interpolation operator) from fine to coarse 12552ed6491fSPatrick Sanan 12562ed6491fSPatrick Sanan Output Parameter: 12572ed6491fSPatrick Sanan . scale - the scaled vector 12582ed6491fSPatrick Sanan 1259bb7acecfSBarry Smith Level: advanced 12602ed6491fSPatrick Sanan 126173ff1848SBarry Smith Note: 1262a4e35b19SJacob Faibussowitsch xcoarse = diag(L)*R*xfine preserves scale and is thus suitable for state (versus residual) 1263a4e35b19SJacob Faibussowitsch restriction. In other words xcoarse is the coarse representation of xfine. 1264a4e35b19SJacob Faibussowitsch 126573ff1848SBarry Smith Developer Note: 1266bb7acecfSBarry Smith If the fine-scale `DMDA` has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()` 1267e9c74fd6SRichard Tran Mills on the restriction/interpolation operator to set the bindingpropagates flag to true. 1268e9c74fd6SRichard Tran Mills 126960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatRestrict()`, `MatInterpolate()`, `DMCreateInterpolation()`, `DMCreateRestriction()`, `DMCreateGlobalVector()` 12702ed6491fSPatrick Sanan @*/ 1271d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolationScale(DM dac, DM daf, Mat mat, Vec *scale) 1272d71ae5a4SJacob Faibussowitsch { 12732ed6491fSPatrick Sanan Vec fine; 12742ed6491fSPatrick Sanan PetscScalar one = 1.0; 12759704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 1276e9c74fd6SRichard Tran Mills PetscBool bindingpropagates, isbound; 12779704db99SRichard Tran Mills #endif 12782ed6491fSPatrick Sanan 12792ed6491fSPatrick Sanan PetscFunctionBegin; 12809566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(daf, &fine)); 12819566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(dac, scale)); 12829566063dSJacob Faibussowitsch PetscCall(VecSet(fine, one)); 12839704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 12849704db99SRichard Tran Mills /* If the 'fine' Vec is bound to the CPU, it makes sense to bind 'mat' as well. 12859704db99SRichard Tran Mills * Note that we only do this for the CUDA case, right now, but if we add support for MatMultTranspose() via ViennaCL, 12869704db99SRichard Tran Mills * we'll need to do it for that case, too.*/ 12879566063dSJacob Faibussowitsch PetscCall(VecGetBindingPropagates(fine, &bindingpropagates)); 1288e9c74fd6SRichard Tran Mills if (bindingpropagates) { 12899566063dSJacob Faibussowitsch PetscCall(MatSetBindingPropagates(mat, PETSC_TRUE)); 12909566063dSJacob Faibussowitsch PetscCall(VecBoundToCPU(fine, &isbound)); 12919566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mat, isbound)); 129283aa49f4SRichard Tran Mills } 12939704db99SRichard Tran Mills #endif 12949566063dSJacob Faibussowitsch PetscCall(MatRestrict(mat, fine, *scale)); 12959566063dSJacob Faibussowitsch PetscCall(VecDestroy(&fine)); 12969566063dSJacob Faibussowitsch PetscCall(VecReciprocal(*scale)); 12973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12982ed6491fSPatrick Sanan } 12992ed6491fSPatrick Sanan 13002ed6491fSPatrick Sanan /*@ 1301bb7acecfSBarry Smith DMCreateRestriction - Gets restriction matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1302bb7acecfSBarry Smith `DMCreateGlobalVector()` on the fine `DM` to similar vectors on the coarse grid `DM`. 13033ad4599aSBarry Smith 130420f4b53cSBarry Smith Collective 13053ad4599aSBarry Smith 1306d8d19677SJose E. Roman Input Parameters: 1307bb7acecfSBarry Smith + dmc - the `DM` object 1308bb7acecfSBarry Smith - dmf - the second, finer `DM` object 13093ad4599aSBarry Smith 13103ad4599aSBarry Smith Output Parameter: 13113ad4599aSBarry Smith . mat - the restriction 13123ad4599aSBarry Smith 13133ad4599aSBarry Smith Level: developer 13143ad4599aSBarry Smith 1315bb7acecfSBarry Smith Note: 1316bb7acecfSBarry Smith This only works for `DMSTAG`. For many situations either the transpose of the operator obtained with `DMCreateInterpolation()` or that 1317bb7acecfSBarry Smith matrix multiplied by the vector obtained with `DMCreateInterpolationScale()` provides the desired object. 13183ad4599aSBarry Smith 13191cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRestrict()`, `DMInterpolate()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateInterpolation()` 13203ad4599aSBarry Smith @*/ 1321d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateRestriction(DM dmc, DM dmf, Mat *mat) 1322d71ae5a4SJacob Faibussowitsch { 13233ad4599aSBarry Smith PetscFunctionBegin; 1324a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1325a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 13264f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13279566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateRestriction, dmc, dmf, 0, 0)); 1328dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createrestriction, dmf, mat); 13299566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateRestriction, dmc, dmf, 0, 0)); 13303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13313ad4599aSBarry Smith } 13323ad4599aSBarry Smith 133347c6ae99SBarry Smith /*@ 1334a4e35b19SJacob Faibussowitsch DMCreateInjection - Gets injection matrix between two `DM` objects. 133547c6ae99SBarry Smith 133620f4b53cSBarry Smith Collective 133747c6ae99SBarry Smith 1338d8d19677SJose E. Roman Input Parameters: 1339bb7acecfSBarry Smith + dac - the `DM` object 1340bb7acecfSBarry Smith - daf - the second, finer `DM` object 134147c6ae99SBarry Smith 134247c6ae99SBarry Smith Output Parameter: 13436dbf9973SLawrence Mitchell . mat - the injection 134447c6ae99SBarry Smith 134547c6ae99SBarry Smith Level: developer 134647c6ae99SBarry Smith 1347a4e35b19SJacob Faibussowitsch Notes: 1348a4e35b19SJacob Faibussowitsch This is an operator that applied to a vector obtained with `DMCreateGlobalVector()` on the 1349a4e35b19SJacob Faibussowitsch fine grid maps the values to a vector on the vector on the coarse `DM` by simply selecting 1350a4e35b19SJacob Faibussowitsch the values on the coarse grid points. This compares to the operator obtained by 1351a4e35b19SJacob Faibussowitsch `DMCreateRestriction()` or the transpose of the operator obtained by 1352a4e35b19SJacob Faibussowitsch `DMCreateInterpolation()` that uses a "local weighted average" of the values around the 1353a4e35b19SJacob Faibussowitsch coarse grid point as the coarse grid value. 1354a4e35b19SJacob Faibussowitsch 1355bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1356bb7acecfSBarry Smith `DMCoarsen()`. The coordinates set into the `DMDA` are completely ignored in computing the injection. 135785afcc9aSBarry Smith 13581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateInterpolation()`, 1359bb7acecfSBarry Smith `DMCreateRestriction()`, `MatRestrict()`, `MatInterpolate()` 136047c6ae99SBarry Smith @*/ 1361d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInjection(DM dac, DM daf, Mat *mat) 1362d71ae5a4SJacob Faibussowitsch { 136347c6ae99SBarry Smith PetscFunctionBegin; 1364a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dac, DM_CLASSID, 1); 1365a5bc1bf3SBarry Smith PetscValidHeaderSpecific(daf, DM_CLASSID, 2); 13664f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13679566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInjection, dac, daf, 0, 0)); 1368dbbe0bcdSBarry Smith PetscUseTypeMethod(dac, createinjection, daf, mat); 13699566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInjection, dac, daf, 0, 0)); 13703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 137147c6ae99SBarry Smith } 137247c6ae99SBarry Smith 1373b412c318SBarry Smith /*@ 1374bb7acecfSBarry Smith DMCreateMassMatrix - Gets the mass matrix between two `DM` objects, M_ij = \int \phi_i \psi_j where the \phi are Galerkin basis functions for a 1375bb7acecfSBarry Smith a Galerkin finite element model on the `DM` 1376bd041c0cSMatthew G. Knepley 137720f4b53cSBarry Smith Collective 1378bd041c0cSMatthew G. Knepley 1379d8d19677SJose E. Roman Input Parameters: 1380bb7acecfSBarry Smith + dmc - the target `DM` object 13818c1c0954SStefano Zampini - dmf - the source `DM` object, can be `NULL` 1382bd041c0cSMatthew G. Knepley 1383bd041c0cSMatthew G. Knepley Output Parameter: 1384b4937a87SMatthew G. Knepley . mat - the mass matrix 1385bd041c0cSMatthew G. Knepley 1386bd041c0cSMatthew G. Knepley Level: developer 1387bd041c0cSMatthew G. Knepley 1388bb7acecfSBarry Smith Notes: 1389bb7acecfSBarry Smith For `DMPLEX` the finite element model for the `DM` must have been already provided. 1390bb7acecfSBarry Smith 13918c1c0954SStefano Zampini if `dmc` is `dmf` or `NULL`, then x^t M x is an approximation to the L2 norm of the vector x which is obtained by `DMCreateGlobalVector()` 1392bb7acecfSBarry Smith 139342747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrixLumped()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1394bd041c0cSMatthew G. Knepley @*/ 1395d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrix(DM dmc, DM dmf, Mat *mat) 1396d71ae5a4SJacob Faibussowitsch { 1397bd041c0cSMatthew G. Knepley PetscFunctionBegin; 1398b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 13998c1c0954SStefano Zampini if (!dmf) dmf = dmc; 1400b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 14014f572ea9SToby Isaac PetscAssertPointer(mat, 3); 14028c1c0954SStefano Zampini PetscCall(PetscLogEventBegin(DM_CreateMassMatrix, dmc, dmf, 0, 0)); 1403dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createmassmatrix, dmf, mat); 14048c1c0954SStefano Zampini PetscCall(PetscLogEventEnd(DM_CreateMassMatrix, dmc, dmf, 0, 0)); 14053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1406b4937a87SMatthew G. Knepley } 1407b4937a87SMatthew G. Knepley 1408b4937a87SMatthew G. Knepley /*@ 1409bb7acecfSBarry Smith DMCreateMassMatrixLumped - Gets the lumped mass matrix for a given `DM` 1410b4937a87SMatthew G. Knepley 141120f4b53cSBarry Smith Collective 1412b4937a87SMatthew G. Knepley 1413b4937a87SMatthew G. Knepley Input Parameter: 1414bb7acecfSBarry Smith . dm - the `DM` object 1415b4937a87SMatthew G. Knepley 14167dcfde4dSJose E. Roman Output Parameters: 14178e9849d2SStefano Zampini + llm - the local lumped mass matrix, which is a diagonal matrix, represented as a vector 14188e9849d2SStefano Zampini - lm - the global lumped mass matrix, which is a diagonal matrix, represented as a vector 1419b4937a87SMatthew G. Knepley 1420b4937a87SMatthew G. Knepley Level: developer 1421b4937a87SMatthew G. Knepley 1422bb7acecfSBarry Smith Note: 1423bb7acecfSBarry Smith See `DMCreateMassMatrix()` for how to create the non-lumped version of the mass matrix. 1424bb7acecfSBarry Smith 142560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrix()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1426b4937a87SMatthew G. Knepley @*/ 14278e9849d2SStefano Zampini PetscErrorCode DMCreateMassMatrixLumped(DM dm, Vec *llm, Vec *lm) 1428d71ae5a4SJacob Faibussowitsch { 1429b4937a87SMatthew G. Knepley PetscFunctionBegin; 1430b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14318e9849d2SStefano Zampini if (llm) PetscAssertPointer(llm, 2); 14328e9849d2SStefano Zampini if (lm) PetscAssertPointer(lm, 3); 14338e9849d2SStefano Zampini if (llm || lm) PetscUseTypeMethod(dm, createmassmatrixlumped, llm, lm); 14343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1435bd041c0cSMatthew G. Knepley } 1436bd041c0cSMatthew G. Knepley 1437bd041c0cSMatthew G. Knepley /*@ 1438bb7acecfSBarry Smith DMCreateColoring - Gets coloring of a graph associated with the `DM`. Often the graph represents the operator matrix associated with the discretization 1439bb7acecfSBarry Smith of a PDE on the `DM`. 144047c6ae99SBarry Smith 144120f4b53cSBarry Smith Collective 144247c6ae99SBarry Smith 1443d8d19677SJose E. Roman Input Parameters: 1444bb7acecfSBarry Smith + dm - the `DM` object 1445bb7acecfSBarry Smith - ctype - `IS_COLORING_LOCAL` or `IS_COLORING_GLOBAL` 144647c6ae99SBarry Smith 144747c6ae99SBarry Smith Output Parameter: 144847c6ae99SBarry Smith . coloring - the coloring 144947c6ae99SBarry Smith 14501bf8429eSBarry Smith Level: developer 14511bf8429eSBarry Smith 1452ec5066bdSBarry Smith Notes: 1453bb7acecfSBarry Smith Coloring of matrices can also be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 1454bb7acecfSBarry Smith matrix comes from (what this function provides). In general using the mesh produces a more optimal coloring (fewer colors). 1455ec5066bdSBarry Smith 1456bb7acecfSBarry Smith This produces a coloring with the distance of 2, see `MatSetColoringDistance()` which can be used for efficiently computing Jacobians with `MatFDColoringCreate()` 14571bf8429eSBarry Smith For `DMDA` in three dimensions with periodic boundary conditions the number of grid points in each dimension must be divisible by 2*stencil_width + 1, 14581bf8429eSBarry Smith otherwise an error will be generated. 1459ec5066bdSBarry Smith 14601cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISColoring`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatType()`, `MatColoring`, `MatFDColoringCreate()` 1461aab9d709SJed Brown @*/ 1462d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateColoring(DM dm, ISColoringType ctype, ISColoring *coloring) 1463d71ae5a4SJacob Faibussowitsch { 146447c6ae99SBarry Smith PetscFunctionBegin; 1465171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14664f572ea9SToby Isaac PetscAssertPointer(coloring, 3); 1467dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getcoloring, ctype, coloring); 14683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 146947c6ae99SBarry Smith } 147047c6ae99SBarry Smith 1471b412c318SBarry Smith /*@ 1472bb7acecfSBarry Smith DMCreateMatrix - Gets an empty matrix for a `DM` that is most commonly used to store the Jacobian of a discrete PDE operator. 147347c6ae99SBarry Smith 147420f4b53cSBarry Smith Collective 147547c6ae99SBarry Smith 147647c6ae99SBarry Smith Input Parameter: 1477bb7acecfSBarry Smith . dm - the `DM` object 147847c6ae99SBarry Smith 147947c6ae99SBarry Smith Output Parameter: 148047c6ae99SBarry Smith . mat - the empty Jacobian 148147c6ae99SBarry Smith 148220f4b53cSBarry Smith Options Database Key: 1483bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 1484f27dd7c6SMatthew G. Knepley 148520f4b53cSBarry Smith Level: beginner 148620f4b53cSBarry Smith 148795452b02SPatrick Sanan Notes: 148895452b02SPatrick Sanan This properly preallocates the number of nonzeros in the sparse matrix so you 148994013140SBarry Smith do not need to do it yourself. 149094013140SBarry Smith 149194013140SBarry Smith By default it also sets the nonzero structure and puts in the zero entries. To prevent setting 1492bb7acecfSBarry Smith the nonzero pattern call `DMSetMatrixPreallocateOnly()` 149394013140SBarry Smith 1494bb7acecfSBarry Smith For `DMDA`, when you call `MatView()` on this matrix it is displayed using the global natural ordering, NOT in the ordering used 149594013140SBarry Smith internally by PETSc. 149694013140SBarry Smith 1497bb7acecfSBarry Smith For `DMDA`, in general it is easiest to use `MatSetValuesStencil()` or `MatSetValuesLocal()` to put values into the matrix because 1498bb7acecfSBarry Smith `MatSetValues()` requires the indices for the global numbering for the `DMDA` which is complic`ated to compute 149994013140SBarry Smith 15001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMSetMatType()`, `DMCreateMassMatrix()` 1501aab9d709SJed Brown @*/ 1502d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMatrix(DM dm, Mat *mat) 1503d71ae5a4SJacob Faibussowitsch { 150447c6ae99SBarry Smith PetscFunctionBegin; 1505171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 15064f572ea9SToby Isaac PetscAssertPointer(mat, 2); 15079566063dSJacob Faibussowitsch PetscCall(MatInitializePackage()); 15089566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateMatrix, 0, 0, 0, 0)); 1509dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, creatematrix, mat); 151076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1511c6b011d8SStefano Zampini DM mdm; 1512c6b011d8SStefano Zampini 15139566063dSJacob Faibussowitsch PetscCall(MatGetDM(*mat, &mdm)); 15147a8be351SBarry Smith PetscCheck(mdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the matrix", ((PetscObject)dm)->type_name); 1515c6b011d8SStefano Zampini } 1516e571a35bSMatthew G. Knepley /* Handle nullspace and near nullspace */ 1517e5e52638SMatthew G. Knepley if (dm->Nf) { 1518e571a35bSMatthew G. Knepley MatNullSpace nullSpace; 1519649ef022SMatthew Knepley PetscInt Nf, f; 1520e571a35bSMatthew G. Knepley 15219566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 1522649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1523649ef022SMatthew Knepley if (dm->nullspaceConstructors[f]) { 15249566063dSJacob Faibussowitsch PetscCall((*dm->nullspaceConstructors[f])(dm, f, f, &nullSpace)); 15259566063dSJacob Faibussowitsch PetscCall(MatSetNullSpace(*mat, nullSpace)); 15269566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1527649ef022SMatthew Knepley break; 1528e571a35bSMatthew G. Knepley } 1529649ef022SMatthew Knepley } 1530649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1531649ef022SMatthew Knepley if (dm->nearnullspaceConstructors[f]) { 15329566063dSJacob Faibussowitsch PetscCall((*dm->nearnullspaceConstructors[f])(dm, f, f, &nullSpace)); 15339566063dSJacob Faibussowitsch PetscCall(MatSetNearNullSpace(*mat, nullSpace)); 15349566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1535e571a35bSMatthew G. Knepley } 1536e571a35bSMatthew G. Knepley } 1537e571a35bSMatthew G. Knepley } 15389566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateMatrix, 0, 0, 0, 0)); 15393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 154047c6ae99SBarry Smith } 154147c6ae99SBarry Smith 1542732e2eb9SMatthew G Knepley /*@ 1543a4e35b19SJacob Faibussowitsch DMSetMatrixPreallocateSkip - When `DMCreateMatrix()` is called the matrix sizes and 1544a4e35b19SJacob Faibussowitsch `ISLocalToGlobalMapping` will be properly set, but the data structures to store values in the 1545a4e35b19SJacob Faibussowitsch matrices will not be preallocated. 1546aa0f6e3cSJed Brown 154720f4b53cSBarry Smith Logically Collective 1548aa0f6e3cSJed Brown 1549aa0f6e3cSJed Brown Input Parameters: 1550bb7acecfSBarry Smith + dm - the `DM` 1551bb7acecfSBarry Smith - skip - `PETSC_TRUE` to skip preallocation 1552aa0f6e3cSJed Brown 1553aa0f6e3cSJed Brown Level: developer 1554aa0f6e3cSJed Brown 155573ff1848SBarry Smith Note: 1556a4e35b19SJacob Faibussowitsch This is most useful to reduce initialization costs when `MatSetPreallocationCOO()` and 1557a4e35b19SJacob Faibussowitsch `MatSetValuesCOO()` will be used. 1558a4e35b19SJacob Faibussowitsch 15591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateOnly()` 1560aa0f6e3cSJed Brown @*/ 1561d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateSkip(DM dm, PetscBool skip) 1562d71ae5a4SJacob Faibussowitsch { 1563aa0f6e3cSJed Brown PetscFunctionBegin; 1564aa0f6e3cSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1565aa0f6e3cSJed Brown dm->prealloc_skip = skip; 15663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1567aa0f6e3cSJed Brown } 1568aa0f6e3cSJed Brown 1569aa0f6e3cSJed Brown /*@ 1570bb7acecfSBarry Smith DMSetMatrixPreallocateOnly - When `DMCreateMatrix()` is called the matrix will be properly 1571732e2eb9SMatthew G Knepley preallocated but the nonzero structure and zero values will not be set. 1572732e2eb9SMatthew G Knepley 157320f4b53cSBarry Smith Logically Collective 1574732e2eb9SMatthew G Knepley 1575d8d19677SJose E. Roman Input Parameters: 1576bb7acecfSBarry Smith + dm - the `DM` 1577bb7acecfSBarry Smith - only - `PETSC_TRUE` if only want preallocation 1578732e2eb9SMatthew G Knepley 157920f4b53cSBarry Smith Options Database Key: 1580bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()`, `DMCreateMassMatrix()`, but do not fill it with zeros 1581f27dd7c6SMatthew G. Knepley 158220f4b53cSBarry Smith Level: developer 158320f4b53cSBarry Smith 15841cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateSkip()` 1585732e2eb9SMatthew G Knepley @*/ 1586d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateOnly(DM dm, PetscBool only) 1587d71ae5a4SJacob Faibussowitsch { 1588732e2eb9SMatthew G Knepley PetscFunctionBegin; 1589732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1590732e2eb9SMatthew G Knepley dm->prealloc_only = only; 15913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1592732e2eb9SMatthew G Knepley } 1593732e2eb9SMatthew G Knepley 1594b06ff27eSHong Zhang /*@ 15950b4b7b1cSBarry Smith DMSetMatrixStructureOnly - When `DMCreateMatrix()` is called, the matrix nonzero structure will be created 1596bb7acecfSBarry Smith but the array for numerical values will not be allocated. 1597b06ff27eSHong Zhang 159820f4b53cSBarry Smith Logically Collective 1599b06ff27eSHong Zhang 1600d8d19677SJose E. Roman Input Parameters: 1601bb7acecfSBarry Smith + dm - the `DM` 16020b4b7b1cSBarry Smith - only - `PETSC_TRUE` if you only want matrix nonzero structure 1603b06ff27eSHong Zhang 1604b06ff27eSHong Zhang Level: developer 1605bb7acecfSBarry Smith 16061cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMSetMatrixPreallocateSkip()` 1607b06ff27eSHong Zhang @*/ 1608d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixStructureOnly(DM dm, PetscBool only) 1609d71ae5a4SJacob Faibussowitsch { 1610b06ff27eSHong Zhang PetscFunctionBegin; 1611b06ff27eSHong Zhang PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1612b06ff27eSHong Zhang dm->structure_only = only; 16133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1614b06ff27eSHong Zhang } 1615b06ff27eSHong Zhang 1616863027abSJed Brown /*@ 1617863027abSJed Brown DMSetBlockingType - set the blocking granularity to be used for variable block size `DMCreateMatrix()` is called 1618863027abSJed Brown 161920f4b53cSBarry Smith Logically Collective 1620863027abSJed Brown 1621863027abSJed Brown Input Parameters: 1622863027abSJed Brown + dm - the `DM` 1623863027abSJed Brown - btype - block by topological point or field node 1624863027abSJed Brown 162520f4b53cSBarry Smith Options Database Key: 16260e762ea3SJed Brown . -dm_blocking_type [topological_point, field_node] - use topological point blocking or field node blocking 1627863027abSJed Brown 162820f4b53cSBarry Smith Level: advanced 162920f4b53cSBarry Smith 16301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()` 1631863027abSJed Brown @*/ 1632863027abSJed Brown PetscErrorCode DMSetBlockingType(DM dm, DMBlockingType btype) 1633863027abSJed Brown { 1634863027abSJed Brown PetscFunctionBegin; 1635863027abSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1636863027abSJed Brown dm->blocking_type = btype; 16373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1638863027abSJed Brown } 1639863027abSJed Brown 1640863027abSJed Brown /*@ 1641863027abSJed Brown DMGetBlockingType - get the blocking granularity to be used for variable block size `DMCreateMatrix()` is called 1642863027abSJed Brown 1643863027abSJed Brown Not Collective 1644863027abSJed Brown 16452fe279fdSBarry Smith Input Parameter: 1646863027abSJed Brown . dm - the `DM` 1647863027abSJed Brown 16482fe279fdSBarry Smith Output Parameter: 1649863027abSJed Brown . btype - block by topological point or field node 1650863027abSJed Brown 1651863027abSJed Brown Level: advanced 1652863027abSJed Brown 16531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()` 1654863027abSJed Brown @*/ 1655863027abSJed Brown PetscErrorCode DMGetBlockingType(DM dm, DMBlockingType *btype) 1656863027abSJed Brown { 1657863027abSJed Brown PetscFunctionBegin; 1658863027abSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16594f572ea9SToby Isaac PetscAssertPointer(btype, 2); 1660863027abSJed Brown *btype = dm->blocking_type; 16613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1662863027abSJed Brown } 1663863027abSJed Brown 1664a89ea682SMatthew G Knepley /*@C 1665bb7acecfSBarry Smith DMGetWorkArray - Gets a work array guaranteed to be at least the input size, restore with `DMRestoreWorkArray()` 1666a89ea682SMatthew G Knepley 1667a89ea682SMatthew G Knepley Not Collective 1668a89ea682SMatthew G Knepley 1669a89ea682SMatthew G Knepley Input Parameters: 1670bb7acecfSBarry Smith + dm - the `DM` object 1671a5b23f4aSJose E. Roman . count - The minimum size 167220f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, or `MPIU_INT`) 1673a89ea682SMatthew G Knepley 1674a89ea682SMatthew G Knepley Output Parameter: 167560225df5SJacob Faibussowitsch . mem - the work array 1676a89ea682SMatthew G Knepley 1677a89ea682SMatthew G Knepley Level: developer 1678a89ea682SMatthew G Knepley 167973ff1848SBarry Smith Notes: 1680da81f932SPierre Jolivet A `DM` may stash the array between instantiations so using this routine may be more efficient than calling `PetscMalloc()` 1681bb7acecfSBarry Smith 1682bb7acecfSBarry Smith The array may contain nonzero values 1683bb7acecfSBarry Smith 16841cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMRestoreWorkArray()`, `PetscMalloc()` 1685a89ea682SMatthew G Knepley @*/ 1686d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1687d71ae5a4SJacob Faibussowitsch { 1688aa1993deSMatthew G Knepley DMWorkLink link; 168969291d52SBarry Smith PetscMPIInt dsize; 1690a89ea682SMatthew G Knepley 1691a89ea682SMatthew G Knepley PetscFunctionBegin; 1692a89ea682SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16934f572ea9SToby Isaac PetscAssertPointer(mem, 4); 1694442f3b32SStefano Zampini if (!count) { 1695442f3b32SStefano Zampini *(void **)mem = NULL; 1696442f3b32SStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 1697442f3b32SStefano Zampini } 1698aa1993deSMatthew G Knepley if (dm->workin) { 1699aa1993deSMatthew G Knepley link = dm->workin; 1700aa1993deSMatthew G Knepley dm->workin = dm->workin->next; 1701aa1993deSMatthew G Knepley } else { 17024dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&link)); 1703a89ea682SMatthew G Knepley } 1704b77fa653SStefano Zampini /* Avoid MPI_Type_size for most used datatypes 1705b77fa653SStefano Zampini Get size directly */ 1706b77fa653SStefano Zampini if (dtype == MPIU_INT) dsize = sizeof(PetscInt); 1707b77fa653SStefano Zampini else if (dtype == MPIU_REAL) dsize = sizeof(PetscReal); 1708b77fa653SStefano Zampini #if defined(PETSC_USE_64BIT_INDICES) 1709b77fa653SStefano Zampini else if (dtype == MPI_INT) dsize = sizeof(int); 1710b77fa653SStefano Zampini #endif 1711b77fa653SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1712b77fa653SStefano Zampini else if (dtype == MPIU_SCALAR) dsize = sizeof(PetscScalar); 1713b77fa653SStefano Zampini #endif 1714b77fa653SStefano Zampini else PetscCallMPI(MPI_Type_size(dtype, &dsize)); 1715b77fa653SStefano Zampini 17165056fcd2SBarry Smith if (((size_t)dsize * count) > link->bytes) { 17179566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 17189566063dSJacob Faibussowitsch PetscCall(PetscMalloc(dsize * count, &link->mem)); 1719854ce69bSBarry Smith link->bytes = dsize * count; 1720aa1993deSMatthew G Knepley } 1721aa1993deSMatthew G Knepley link->next = dm->workout; 1722aa1993deSMatthew G Knepley dm->workout = link; 1723aa1993deSMatthew G Knepley *(void **)mem = link->mem; 17243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1725a89ea682SMatthew G Knepley } 1726a89ea682SMatthew G Knepley 1727aa1993deSMatthew G Knepley /*@C 1728bb7acecfSBarry Smith DMRestoreWorkArray - Restores a work array obtained with `DMCreateWorkArray()` 1729aa1993deSMatthew G Knepley 1730aa1993deSMatthew G Knepley Not Collective 1731aa1993deSMatthew G Knepley 1732aa1993deSMatthew G Knepley Input Parameters: 1733bb7acecfSBarry Smith + dm - the `DM` object 1734a5b23f4aSJose E. Roman . count - The minimum size 173520f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, `MPIU_INT` 1736aa1993deSMatthew G Knepley 1737aa1993deSMatthew G Knepley Output Parameter: 173860225df5SJacob Faibussowitsch . mem - the work array 1739aa1993deSMatthew G Knepley 1740aa1993deSMatthew G Knepley Level: developer 1741aa1993deSMatthew G Knepley 174273ff1848SBarry Smith Developer Note: 1743bb7acecfSBarry Smith count and dtype are ignored, they are only needed for `DMGetWorkArray()` 1744147403d9SBarry Smith 17451cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMGetWorkArray()` 1746aa1993deSMatthew G Knepley @*/ 1747d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestoreWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1748d71ae5a4SJacob Faibussowitsch { 1749aa1993deSMatthew G Knepley DMWorkLink *p, link; 1750aa1993deSMatthew G Knepley 1751aa1993deSMatthew G Knepley PetscFunctionBegin; 17524f572ea9SToby Isaac PetscAssertPointer(mem, 4); 1753a4e35b19SJacob Faibussowitsch (void)count; 1754a4e35b19SJacob Faibussowitsch (void)dtype; 1755442f3b32SStefano Zampini if (!*(void **)mem) PetscFunctionReturn(PETSC_SUCCESS); 1756aa1993deSMatthew G Knepley for (p = &dm->workout; (link = *p); p = &link->next) { 1757aa1993deSMatthew G Knepley if (link->mem == *(void **)mem) { 1758aa1993deSMatthew G Knepley *p = link->next; 1759aa1993deSMatthew G Knepley link->next = dm->workin; 1760aa1993deSMatthew G Knepley dm->workin = link; 17610298fd71SBarry Smith *(void **)mem = NULL; 17623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1763aa1993deSMatthew G Knepley } 1764aa1993deSMatthew G Knepley } 1765aa1993deSMatthew G Knepley SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Array was not checked out"); 1766aa1993deSMatthew G Knepley } 1767e7c4fc90SDmitry Karpeev 17688cda7954SMatthew G. Knepley /*@C 1769bb7acecfSBarry Smith DMSetNullSpaceConstructor - Provide a callback function which constructs the nullspace for a given field, defined with `DMAddField()`, when function spaces 1770bb7acecfSBarry Smith are joined or split, such as in `DMCreateSubDM()` 17718cda7954SMatthew G. Knepley 177220f4b53cSBarry Smith Logically Collective; No Fortran Support 17738cda7954SMatthew G. Knepley 17748cda7954SMatthew G. Knepley Input Parameters: 1775bb7acecfSBarry Smith + dm - The `DM` 17768cda7954SMatthew G. Knepley . field - The field number for the nullspace 17778cda7954SMatthew G. Knepley - nullsp - A callback to create the nullspace 17788cda7954SMatthew G. Knepley 177920f4b53cSBarry Smith Calling sequence of `nullsp`: 1780bb7acecfSBarry Smith + dm - The present `DM` 1781bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1782147403d9SBarry Smith . field - The field number in dm 1783147403d9SBarry Smith - nullSpace - The nullspace for the given field 17848cda7954SMatthew G. Knepley 178549762cbcSSatish Balay Level: intermediate 178649762cbcSSatish Balay 17871cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1788147403d9SBarry Smith @*/ 1789a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1790d71ae5a4SJacob Faibussowitsch { 1791435a35e8SMatthew G Knepley PetscFunctionBegin; 1792435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17937a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1794435a35e8SMatthew G Knepley dm->nullspaceConstructors[field] = nullsp; 17953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1796435a35e8SMatthew G Knepley } 1797435a35e8SMatthew G Knepley 17988cda7954SMatthew G. Knepley /*@C 1799bb7acecfSBarry Smith DMGetNullSpaceConstructor - Return the callback function which constructs the nullspace for a given field, defined with `DMAddField()` 18008cda7954SMatthew G. Knepley 180120f4b53cSBarry Smith Not Collective; No Fortran Support 18028cda7954SMatthew G. Knepley 18038cda7954SMatthew G. Knepley Input Parameters: 1804bb7acecfSBarry Smith + dm - The `DM` 18058cda7954SMatthew G. Knepley - field - The field number for the nullspace 18068cda7954SMatthew G. Knepley 18078cda7954SMatthew G. Knepley Output Parameter: 18088cda7954SMatthew G. Knepley . nullsp - A callback to create the nullspace 18098cda7954SMatthew G. Knepley 181020f4b53cSBarry Smith Calling sequence of `nullsp`: 1811147403d9SBarry Smith + dm - The present DM 1812147403d9SBarry Smith . origField - The field number given above, in the original DM 1813147403d9SBarry Smith . field - The field number in dm 1814147403d9SBarry Smith - nullSpace - The nullspace for the given field 18158cda7954SMatthew G. Knepley 181649762cbcSSatish Balay Level: intermediate 181749762cbcSSatish Balay 18181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1819147403d9SBarry Smith @*/ 1820a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1821d71ae5a4SJacob Faibussowitsch { 18220a50eb56SMatthew G. Knepley PetscFunctionBegin; 18230a50eb56SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18244f572ea9SToby Isaac PetscAssertPointer(nullsp, 3); 18257a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 18260a50eb56SMatthew G. Knepley *nullsp = dm->nullspaceConstructors[field]; 18273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18280a50eb56SMatthew G. Knepley } 18290a50eb56SMatthew G. Knepley 18308cda7954SMatthew G. Knepley /*@C 1831bb7acecfSBarry Smith DMSetNearNullSpaceConstructor - Provide a callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 18328cda7954SMatthew G. Knepley 183320f4b53cSBarry Smith Logically Collective; No Fortran Support 18348cda7954SMatthew G. Knepley 18358cda7954SMatthew G. Knepley Input Parameters: 1836bb7acecfSBarry Smith + dm - The `DM` 18378cda7954SMatthew G. Knepley . field - The field number for the nullspace 18388cda7954SMatthew G. Knepley - nullsp - A callback to create the near-nullspace 18398cda7954SMatthew G. Knepley 184020f4b53cSBarry Smith Calling sequence of `nullsp`: 1841bb7acecfSBarry Smith + dm - The present `DM` 1842bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1843147403d9SBarry Smith . field - The field number in dm 1844147403d9SBarry Smith - nullSpace - The nullspace for the given field 18458cda7954SMatthew G. Knepley 184649762cbcSSatish Balay Level: intermediate 184749762cbcSSatish Balay 18481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`, 1849bb7acecfSBarry Smith `MatNullSpace` 1850147403d9SBarry Smith @*/ 1851a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1852d71ae5a4SJacob Faibussowitsch { 1853f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1854f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18557a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1856f9d4088aSMatthew G. Knepley dm->nearnullspaceConstructors[field] = nullsp; 18573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1858f9d4088aSMatthew G. Knepley } 1859f9d4088aSMatthew G. Knepley 18608cda7954SMatthew G. Knepley /*@C 1861bb7acecfSBarry Smith DMGetNearNullSpaceConstructor - Return the callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 18628cda7954SMatthew G. Knepley 186320f4b53cSBarry Smith Not Collective; No Fortran Support 18648cda7954SMatthew G. Knepley 18658cda7954SMatthew G. Knepley Input Parameters: 1866bb7acecfSBarry Smith + dm - The `DM` 18678cda7954SMatthew G. Knepley - field - The field number for the nullspace 18688cda7954SMatthew G. Knepley 18698cda7954SMatthew G. Knepley Output Parameter: 18708cda7954SMatthew G. Knepley . nullsp - A callback to create the near-nullspace 18718cda7954SMatthew G. Knepley 187220f4b53cSBarry Smith Calling sequence of `nullsp`: 1873bb7acecfSBarry Smith + dm - The present `DM` 1874bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1875147403d9SBarry Smith . field - The field number in dm 1876147403d9SBarry Smith - nullSpace - The nullspace for the given field 18778cda7954SMatthew G. Knepley 187849762cbcSSatish Balay Level: intermediate 187949762cbcSSatish Balay 18801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, 1881bb7acecfSBarry Smith `MatNullSpace`, `DMCreateSuperDM()` 1882147403d9SBarry Smith @*/ 1883a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1884d71ae5a4SJacob Faibussowitsch { 1885f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1886f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18874f572ea9SToby Isaac PetscAssertPointer(nullsp, 3); 18887a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1889f9d4088aSMatthew G. Knepley *nullsp = dm->nearnullspaceConstructors[field]; 18903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1891f9d4088aSMatthew G. Knepley } 1892f9d4088aSMatthew G. Knepley 18934f3b5142SJed Brown /*@C 1894bb7acecfSBarry Smith DMCreateFieldIS - Creates a set of `IS` objects with the global indices of dofs for each field defined with `DMAddField()` 18954d343eeaSMatthew G Knepley 189620f4b53cSBarry Smith Not Collective; No Fortran Support 18974d343eeaSMatthew G Knepley 18984d343eeaSMatthew G Knepley Input Parameter: 1899bb7acecfSBarry Smith . dm - the `DM` object 19004d343eeaSMatthew G Knepley 19014d343eeaSMatthew G Knepley Output Parameters: 190220f4b53cSBarry Smith + numFields - The number of fields (or `NULL` if not requested) 1903ce78bad3SBarry Smith . fieldNames - The name of each field (or `NULL` if not requested) 190420f4b53cSBarry Smith - fields - The global indices for each field (or `NULL` if not requested) 19054d343eeaSMatthew G Knepley 19064d343eeaSMatthew G Knepley Level: intermediate 19074d343eeaSMatthew G Knepley 1908bb7acecfSBarry Smith Note: 190973ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `fieldNames` should be freed with 191073ff1848SBarry Smith `PetscFree()`, every entry of `fields` should be destroyed with `ISDestroy()`, and both arrays should be freed with 1911bb7acecfSBarry Smith `PetscFree()`. 191221c9b008SJed Brown 191373ff1848SBarry Smith Developer Note: 1914bb7acecfSBarry Smith It is not clear why both this function and `DMCreateFieldDecomposition()` exist. Having two seems redundant and confusing. This function should 1915bb7acecfSBarry Smith likely be removed. 1916bb7acecfSBarry Smith 19171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1918bb7acecfSBarry Smith `DMCreateFieldDecomposition()` 19194d343eeaSMatthew G Knepley @*/ 1920ce78bad3SBarry Smith PetscErrorCode DMCreateFieldIS(DM dm, PetscInt *numFields, char ***fieldNames, IS *fields[]) 1921d71ae5a4SJacob Faibussowitsch { 192237d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 19234d343eeaSMatthew G Knepley 19244d343eeaSMatthew G Knepley PetscFunctionBegin; 19254d343eeaSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 192669ca1f37SDmitry Karpeev if (numFields) { 19274f572ea9SToby Isaac PetscAssertPointer(numFields, 2); 192869ca1f37SDmitry Karpeev *numFields = 0; 192969ca1f37SDmitry Karpeev } 193037d0c07bSMatthew G Knepley if (fieldNames) { 19314f572ea9SToby Isaac PetscAssertPointer(fieldNames, 3); 19320298fd71SBarry Smith *fieldNames = NULL; 193369ca1f37SDmitry Karpeev } 193469ca1f37SDmitry Karpeev if (fields) { 19354f572ea9SToby Isaac PetscAssertPointer(fields, 4); 19360298fd71SBarry Smith *fields = NULL; 193769ca1f37SDmitry Karpeev } 19389566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 193937d0c07bSMatthew G Knepley if (section) { 19403a544194SStefano Zampini PetscInt *fieldSizes, *fieldNc, **fieldIndices; 194137d0c07bSMatthew G Knepley PetscInt nF, f, pStart, pEnd, p; 194237d0c07bSMatthew G Knepley 19439566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 19449566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &nF)); 19459566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nF, &fieldSizes, nF, &fieldNc, nF, &fieldIndices)); 19469566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd)); 194737d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 194837d0c07bSMatthew G Knepley fieldSizes[f] = 0; 19499566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &fieldNc[f])); 195037d0c07bSMatthew G Knepley } 195137d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 195237d0c07bSMatthew G Knepley PetscInt gdof; 195337d0c07bSMatthew G Knepley 19549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 195537d0c07bSMatthew G Knepley if (gdof > 0) { 195637d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19573a544194SStefano Zampini PetscInt fdof, fcdof, fpdof; 195837d0c07bSMatthew G Knepley 19599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19609566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 19613a544194SStefano Zampini fpdof = fdof - fcdof; 19623a544194SStefano Zampini if (fpdof && fpdof != fieldNc[f]) { 19633a544194SStefano Zampini /* Layout does not admit a pointwise block size */ 19643a544194SStefano Zampini fieldNc[f] = 1; 19653a544194SStefano Zampini } 19663a544194SStefano Zampini fieldSizes[f] += fpdof; 196737d0c07bSMatthew G Knepley } 196837d0c07bSMatthew G Knepley } 196937d0c07bSMatthew G Knepley } 197037d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(fieldSizes[f], &fieldIndices[f])); 197237d0c07bSMatthew G Knepley fieldSizes[f] = 0; 197337d0c07bSMatthew G Knepley } 197437d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 197537d0c07bSMatthew G Knepley PetscInt gdof, goff; 197637d0c07bSMatthew G Knepley 19779566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 197837d0c07bSMatthew G Knepley if (gdof > 0) { 19799566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &goff)); 198037d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 198137d0c07bSMatthew G Knepley PetscInt fdof, fcdof, fc; 198237d0c07bSMatthew G Knepley 19839566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19849566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 1985ad540459SPierre Jolivet for (fc = 0; fc < fdof - fcdof; ++fc, ++fieldSizes[f]) fieldIndices[f][fieldSizes[f]] = goff++; 198637d0c07bSMatthew G Knepley } 198737d0c07bSMatthew G Knepley } 198837d0c07bSMatthew G Knepley } 19898865f1eaSKarl Rupp if (numFields) *numFields = nF; 199037d0c07bSMatthew G Knepley if (fieldNames) { 19919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fieldNames)); 199237d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 199337d0c07bSMatthew G Knepley const char *fieldName; 199437d0c07bSMatthew G Knepley 19959566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 1996835f2295SStefano Zampini PetscCall(PetscStrallocpy(fieldName, &(*fieldNames)[f])); 199737d0c07bSMatthew G Knepley } 199837d0c07bSMatthew G Knepley } 199937d0c07bSMatthew G Knepley if (fields) { 20009566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fields)); 200137d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 20023a544194SStefano Zampini PetscInt bs, in[2], out[2]; 20033a544194SStefano Zampini 20049566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), fieldSizes[f], fieldIndices[f], PETSC_OWN_POINTER, &(*fields)[f])); 20053a544194SStefano Zampini in[0] = -fieldNc[f]; 20063a544194SStefano Zampini in[1] = fieldNc[f]; 2007462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 20083a544194SStefano Zampini bs = (-out[0] == out[1]) ? out[1] : 1; 20099566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize((*fields)[f], bs)); 201037d0c07bSMatthew G Knepley } 201137d0c07bSMatthew G Knepley } 20129566063dSJacob Faibussowitsch PetscCall(PetscFree3(fieldSizes, fieldNc, fieldIndices)); 2013dbbe0bcdSBarry Smith } else PetscTryTypeMethod(dm, createfieldis, numFields, fieldNames, fields); 20143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20154d343eeaSMatthew G Knepley } 20164d343eeaSMatthew G Knepley 201716621825SDmitry Karpeev /*@C 2018bb7acecfSBarry Smith DMCreateFieldDecomposition - Returns a list of `IS` objects defining a decomposition of a problem into subproblems 2019a4e35b19SJacob Faibussowitsch corresponding to different fields. 2020e7c4fc90SDmitry Karpeev 202120f4b53cSBarry Smith Not Collective; No Fortran Support 2022e7c4fc90SDmitry Karpeev 2023e7c4fc90SDmitry Karpeev Input Parameter: 2024bb7acecfSBarry Smith . dm - the `DM` object 2025e7c4fc90SDmitry Karpeev 2026e7c4fc90SDmitry Karpeev Output Parameters: 202720f4b53cSBarry Smith + len - The number of fields (or `NULL` if not requested) 202820f4b53cSBarry Smith . namelist - The name for each field (or `NULL` if not requested) 202920f4b53cSBarry Smith . islist - The global indices for each field (or `NULL` if not requested) 203020f4b53cSBarry Smith - dmlist - The `DM`s for each field subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined) 2031e7c4fc90SDmitry Karpeev 2032e7c4fc90SDmitry Karpeev Level: intermediate 2033e7c4fc90SDmitry Karpeev 2034a4e35b19SJacob Faibussowitsch Notes: 2035a4e35b19SJacob Faibussowitsch Each `IS` contains the global indices of the dofs of the corresponding field, defined by 2036a4e35b19SJacob Faibussowitsch `DMAddField()`. The optional list of `DM`s define the `DM` for each subproblem. 2037a4e35b19SJacob Faibussowitsch 2038a4e35b19SJacob Faibussowitsch The same as `DMCreateFieldIS()` but also returns a `DM` for each field. 2039a4e35b19SJacob Faibussowitsch 204073ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with 204173ff1848SBarry Smith `PetscFree()`, every entry of `islist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`, 2042bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 2043e7c4fc90SDmitry Karpeev 20448d9ecca5SBarry Smith Fortran Notes: 20458d9ecca5SBarry Smith Use the declarations 20468d9ecca5SBarry Smith .vb 20478d9ecca5SBarry Smith character(80), pointer :: namelist(:) 20488d9ecca5SBarry Smith IS, pointer :: islist(:) 20498d9ecca5SBarry Smith DM, pointer :: dmlist(:) 20508d9ecca5SBarry Smith .ve 20518d9ecca5SBarry Smith 20528d9ecca5SBarry Smith `namelist` must be provided, `islist` may be `PETSC_NULL_IS_POINTER` and `dmlist` may be `PETSC_NULL_DM_POINTER` 20538d9ecca5SBarry Smith 20548d9ecca5SBarry Smith Use `DMDestroyFieldDecomposition()` to free the returned objects 20558d9ecca5SBarry Smith 205660225df5SJacob Faibussowitsch Developer Notes: 2057bb7acecfSBarry Smith It is not clear why this function and `DMCreateFieldIS()` exist. Having two seems redundant and confusing. 2058bb7acecfSBarry Smith 205973ff1848SBarry Smith Unlike `DMRefine()`, `DMCoarsen()`, and `DMCreateDomainDecomposition()` this provides no mechanism to provide hooks that are called after the 206073ff1848SBarry Smith decomposition is computed. 206173ff1848SBarry Smith 206273ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMCreateFieldIS()`, `DMCreateSubDM()`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()` 2063e7c4fc90SDmitry Karpeev @*/ 2064ce78bad3SBarry Smith PetscErrorCode DMCreateFieldDecomposition(DM dm, PetscInt *len, char ***namelist, IS *islist[], DM *dmlist[]) 2065d71ae5a4SJacob Faibussowitsch { 2066e7c4fc90SDmitry Karpeev PetscFunctionBegin; 2067e7c4fc90SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 20688865f1eaSKarl Rupp if (len) { 20694f572ea9SToby Isaac PetscAssertPointer(len, 2); 20708865f1eaSKarl Rupp *len = 0; 20718865f1eaSKarl Rupp } 20728865f1eaSKarl Rupp if (namelist) { 20734f572ea9SToby Isaac PetscAssertPointer(namelist, 3); 2074ea78f98cSLisandro Dalcin *namelist = NULL; 20758865f1eaSKarl Rupp } 20768865f1eaSKarl Rupp if (islist) { 20774f572ea9SToby Isaac PetscAssertPointer(islist, 4); 2078ea78f98cSLisandro Dalcin *islist = NULL; 20798865f1eaSKarl Rupp } 20808865f1eaSKarl Rupp if (dmlist) { 20814f572ea9SToby Isaac PetscAssertPointer(dmlist, 5); 2082ea78f98cSLisandro Dalcin *dmlist = NULL; 20838865f1eaSKarl Rupp } 2084f3f0edfdSDmitry Karpeev /* 2085f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2086f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2087f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2088f3f0edfdSDmitry Karpeev */ 20897a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 209016621825SDmitry Karpeev if (!dm->ops->createfielddecomposition) { 2091435a35e8SMatthew G Knepley PetscSection section; 2092435a35e8SMatthew G Knepley PetscInt numFields, f; 2093435a35e8SMatthew G Knepley 20949566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 20959566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(section, &numFields)); 2096435a35e8SMatthew G Knepley if (section && numFields && dm->ops->createsubdm) { 2097f25d98f1SMatthew G. Knepley if (len) *len = numFields; 20989566063dSJacob Faibussowitsch if (namelist) PetscCall(PetscMalloc1(numFields, namelist)); 20999566063dSJacob Faibussowitsch if (islist) PetscCall(PetscMalloc1(numFields, islist)); 21009566063dSJacob Faibussowitsch if (dmlist) PetscCall(PetscMalloc1(numFields, dmlist)); 2101435a35e8SMatthew G Knepley for (f = 0; f < numFields; ++f) { 2102435a35e8SMatthew G Knepley const char *fieldName; 2103435a35e8SMatthew G Knepley 21049566063dSJacob Faibussowitsch PetscCall(DMCreateSubDM(dm, 1, &f, islist ? &(*islist)[f] : NULL, dmlist ? &(*dmlist)[f] : NULL)); 210503dc3394SMatthew G. Knepley if (namelist) { 21069566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 2107835f2295SStefano Zampini PetscCall(PetscStrallocpy(fieldName, &(*namelist)[f])); 2108435a35e8SMatthew G Knepley } 210903dc3394SMatthew G. Knepley } 2110435a35e8SMatthew G Knepley } else { 21119566063dSJacob Faibussowitsch PetscCall(DMCreateFieldIS(dm, len, namelist, islist)); 2112e7c4fc90SDmitry Karpeev /* By default there are no DMs associated with subproblems. */ 21130298fd71SBarry Smith if (dmlist) *dmlist = NULL; 2114e7c4fc90SDmitry Karpeev } 2115dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, createfielddecomposition, len, namelist, islist, dmlist); 21163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 211716621825SDmitry Karpeev } 211816621825SDmitry Karpeev 21195d83a8b1SBarry Smith /*@ 212020f4b53cSBarry Smith DMCreateSubDM - Returns an `IS` and `DM` encapsulating a subproblem defined by the fields passed in. 212120f4b53cSBarry Smith The fields are defined by `DMCreateFieldIS()`. 2122435a35e8SMatthew G Knepley 2123435a35e8SMatthew G Knepley Not collective 2124435a35e8SMatthew G Knepley 2125435a35e8SMatthew G Knepley Input Parameters: 2126bb7acecfSBarry Smith + dm - The `DM` object 2127bb7acecfSBarry Smith . numFields - The number of fields to select 21282adcc780SMatthew G. Knepley - fields - The field numbers of the selected fields 2129435a35e8SMatthew G Knepley 2130435a35e8SMatthew G Knepley Output Parameters: 2131b6971eaeSBarry Smith + is - The global indices for all the degrees of freedom in the new sub `DM`, use `NULL` if not needed 2132b6971eaeSBarry Smith - subdm - The `DM` for the subproblem, use `NULL` if not needed 2133435a35e8SMatthew G Knepley 213420f4b53cSBarry Smith Level: intermediate 213520f4b53cSBarry Smith 2136bb7acecfSBarry Smith Note: 2137bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 21385d3b26e6SMatthew G. Knepley 213960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateFieldIS()`, `DMCreateFieldDecomposition()`, `DMAddField()`, `DMCreateSuperDM()`, `IS`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 2140435a35e8SMatthew G Knepley @*/ 2141d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSubDM(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm) 2142d71ae5a4SJacob Faibussowitsch { 2143435a35e8SMatthew G Knepley PetscFunctionBegin; 2144435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 21454f572ea9SToby Isaac PetscAssertPointer(fields, 3); 21464f572ea9SToby Isaac if (is) PetscAssertPointer(is, 4); 21474f572ea9SToby Isaac if (subdm) PetscAssertPointer(subdm, 5); 2148dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createsubdm, numFields, fields, is, subdm); 21493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2150435a35e8SMatthew G Knepley } 2151435a35e8SMatthew G Knepley 21522adcc780SMatthew G. Knepley /*@C 2153ce78bad3SBarry Smith DMCreateSuperDM - Returns an arrays of `IS` and a single `DM` encapsulating a superproblem defined by multiple `DM`s passed in. 21542adcc780SMatthew G. Knepley 21552adcc780SMatthew G. Knepley Not collective 21562adcc780SMatthew G. Knepley 2157d8d19677SJose E. Roman Input Parameters: 2158bb7acecfSBarry Smith + dms - The `DM` objects 2159bb7acecfSBarry Smith - n - The number of `DM`s 21602adcc780SMatthew G. Knepley 21612adcc780SMatthew G. Knepley Output Parameters: 2162ce78bad3SBarry Smith + is - The global indices for each of subproblem within the super `DM`, or `NULL`, its length is `n` 2163bb7acecfSBarry Smith - superdm - The `DM` for the superproblem 21642adcc780SMatthew G. Knepley 216520f4b53cSBarry Smith Level: intermediate 216620f4b53cSBarry Smith 2167bb7acecfSBarry Smith Note: 2168bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 21695d3b26e6SMatthew G. Knepley 217073ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateSubDM()`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`, `DMCreateDomainDecomposition()` 21712adcc780SMatthew G. Knepley @*/ 21725d83a8b1SBarry Smith PetscErrorCode DMCreateSuperDM(DM dms[], PetscInt n, IS *is[], DM *superdm) 2173d71ae5a4SJacob Faibussowitsch { 21742adcc780SMatthew G. Knepley PetscInt i; 21752adcc780SMatthew G. Knepley 21762adcc780SMatthew G. Knepley PetscFunctionBegin; 21774f572ea9SToby Isaac PetscAssertPointer(dms, 1); 2178ad540459SPierre Jolivet for (i = 0; i < n; ++i) PetscValidHeaderSpecific(dms[i], DM_CLASSID, 1); 21794f572ea9SToby Isaac if (is) PetscAssertPointer(is, 3); 21804f572ea9SToby Isaac PetscAssertPointer(superdm, 4); 2181bb7acecfSBarry Smith PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of DMs must be nonnegative: %" PetscInt_FMT, n); 2182bb7acecfSBarry Smith if (n) { 2183b9d85ea2SLisandro Dalcin DM dm = dms[0]; 218400045ab3SPierre Jolivet PetscCheck(dm->ops->createsuperdm, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No method createsuperdm for DM of type %s", ((PetscObject)dm)->type_name); 2185dbbe0bcdSBarry Smith PetscCall((*dm->ops->createsuperdm)(dms, n, is, superdm)); 21862adcc780SMatthew G. Knepley } 21873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21882adcc780SMatthew G. Knepley } 21892adcc780SMatthew G. Knepley 219016621825SDmitry Karpeev /*@C 2191a4e35b19SJacob Faibussowitsch DMCreateDomainDecomposition - Returns lists of `IS` objects defining a decomposition of a 2192a4e35b19SJacob Faibussowitsch problem into subproblems corresponding to restrictions to pairs of nested subdomains. 219316621825SDmitry Karpeev 219420f4b53cSBarry Smith Not Collective 219516621825SDmitry Karpeev 219616621825SDmitry Karpeev Input Parameter: 2197bb7acecfSBarry Smith . dm - the `DM` object 219816621825SDmitry Karpeev 219916621825SDmitry Karpeev Output Parameters: 2200ce78bad3SBarry Smith + n - The number of subproblems in the domain decomposition (or `NULL` if not requested), also the length of the four arrays below 220120f4b53cSBarry Smith . namelist - The name for each subdomain (or `NULL` if not requested) 220273ff1848SBarry Smith . innerislist - The global indices for each inner subdomain (or `NULL`, if not requested) 220373ff1848SBarry Smith . outerislist - The global indices for each outer subdomain (or `NULL`, if not requested) 220473ff1848SBarry Smith - dmlist - The `DM`s for each subdomain subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined) 220516621825SDmitry Karpeev 220616621825SDmitry Karpeev Level: intermediate 220716621825SDmitry Karpeev 220873ff1848SBarry Smith Notes: 2209a4e35b19SJacob Faibussowitsch Each `IS` contains the global indices of the dofs of the corresponding subdomains with in the 2210a4e35b19SJacob Faibussowitsch dofs of the original `DM`. The inner subdomains conceptually define a nonoverlapping 2211a4e35b19SJacob Faibussowitsch covering, while outer subdomains can overlap. 2212a4e35b19SJacob Faibussowitsch 2213a4e35b19SJacob Faibussowitsch The optional list of `DM`s define a `DM` for each subproblem. 2214a4e35b19SJacob Faibussowitsch 221573ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with 221673ff1848SBarry Smith `PetscFree()`, every entry of `innerislist` and `outerislist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`, 2217bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 221816621825SDmitry Karpeev 2219a4e35b19SJacob Faibussowitsch Developer Notes: 222020f4b53cSBarry Smith The `dmlist` is for the inner subdomains or the outer subdomains or all subdomains? 2221bb7acecfSBarry Smith 222273ff1848SBarry Smith The names are inconsistent, the hooks use `DMSubDomainHook` which is nothing like `DMCreateDomainDecomposition()` while `DMRefineHook` is used for `DMRefine()`. 222373ff1848SBarry Smith 222473ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateFieldDecomposition()`, `DMDestroy()`, `DMCreateDomainDecompositionScatters()`, `DMView()`, `DMCreateInterpolation()`, 222573ff1848SBarry Smith `DMSubDomainHookAdd()`, `DMSubDomainHookRemove()`,`DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()` 222616621825SDmitry Karpeev @*/ 2227ce78bad3SBarry Smith PetscErrorCode DMCreateDomainDecomposition(DM dm, PetscInt *n, char ***namelist, IS *innerislist[], IS *outerislist[], DM *dmlist[]) 2228d71ae5a4SJacob Faibussowitsch { 2229be081cd6SPeter Brune DMSubDomainHookLink link; 2230be081cd6SPeter Brune PetscInt i, l; 223116621825SDmitry Karpeev 223216621825SDmitry Karpeev PetscFunctionBegin; 223316621825SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 22349371c9d4SSatish Balay if (n) { 22354f572ea9SToby Isaac PetscAssertPointer(n, 2); 22369371c9d4SSatish Balay *n = 0; 22379371c9d4SSatish Balay } 22389371c9d4SSatish Balay if (namelist) { 22394f572ea9SToby Isaac PetscAssertPointer(namelist, 3); 22409371c9d4SSatish Balay *namelist = NULL; 22419371c9d4SSatish Balay } 22429371c9d4SSatish Balay if (innerislist) { 22434f572ea9SToby Isaac PetscAssertPointer(innerislist, 4); 22449371c9d4SSatish Balay *innerislist = NULL; 22459371c9d4SSatish Balay } 22469371c9d4SSatish Balay if (outerislist) { 22474f572ea9SToby Isaac PetscAssertPointer(outerislist, 5); 22489371c9d4SSatish Balay *outerislist = NULL; 22499371c9d4SSatish Balay } 22509371c9d4SSatish Balay if (dmlist) { 22514f572ea9SToby Isaac PetscAssertPointer(dmlist, 6); 22529371c9d4SSatish Balay *dmlist = NULL; 22539371c9d4SSatish Balay } 2254f3f0edfdSDmitry Karpeev /* 2255f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2256f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2257f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2258f3f0edfdSDmitry Karpeev */ 22597a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 226016621825SDmitry Karpeev if (dm->ops->createdomaindecomposition) { 2261dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createdomaindecomposition, &l, namelist, innerislist, outerislist, dmlist); 226214a18fd3SPeter Brune /* copy subdomain hooks and context over to the subdomain DMs */ 2263f891f5b9SPatrick Sanan if (dmlist && *dmlist) { 2264be081cd6SPeter Brune for (i = 0; i < l; i++) { 2265be081cd6SPeter Brune for (link = dm->subdomainhook; link; link = link->next) { 22669566063dSJacob Faibussowitsch if (link->ddhook) PetscCall((*link->ddhook)(dm, (*dmlist)[i], link->ctx)); 2267be081cd6SPeter Brune } 2268648262bbSPatrick Sanan if (dm->ctx) (*dmlist)[i]->ctx = dm->ctx; 2269e7c4fc90SDmitry Karpeev } 227014a18fd3SPeter Brune } 2271bb7acecfSBarry Smith if (n) *n = l; 227214a18fd3SPeter Brune } 22733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2274e30e807fSPeter Brune } 2275e30e807fSPeter Brune 2276e30e807fSPeter Brune /*@C 227773ff1848SBarry Smith DMCreateDomainDecompositionScatters - Returns scatters to the subdomain vectors from the global vector for subdomains created with 227873ff1848SBarry Smith `DMCreateDomainDecomposition()` 2279e30e807fSPeter Brune 228020f4b53cSBarry Smith Not Collective 2281e30e807fSPeter Brune 2282e30e807fSPeter Brune Input Parameters: 2283bb7acecfSBarry Smith + dm - the `DM` object 228473ff1848SBarry Smith . n - the number of subdomains 2285e30e807fSPeter Brune - subdms - the local subdomains 2286e30e807fSPeter Brune 2287e30e807fSPeter Brune Output Parameters: 22886b867d5aSJose E. Roman + iscat - scatter from global vector to nonoverlapping global vector entries on subdomain 2289e30e807fSPeter Brune . oscat - scatter from global vector to overlapping global vector entries on subdomain 2290e30e807fSPeter Brune - gscat - scatter from global vector to local vector on subdomain (fills in ghosts) 2291e30e807fSPeter Brune 229220f4b53cSBarry Smith Level: developer 229320f4b53cSBarry Smith 2294bb7acecfSBarry Smith Note: 2295bb7acecfSBarry Smith This is an alternative to the iis and ois arguments in `DMCreateDomainDecomposition()` that allow for the solution 2296e30e807fSPeter Brune of general nonlinear problems with overlapping subdomain methods. While merely having index sets that enable subsets 2297e30e807fSPeter Brune of the residual equations to be created is fine for linear problems, nonlinear problems require local assembly of 2298e30e807fSPeter Brune solution and residual data. 2299e30e807fSPeter Brune 230073ff1848SBarry Smith Developer Note: 2301a4e35b19SJacob Faibussowitsch Can the subdms input be anything or are they exactly the `DM` obtained from 2302a4e35b19SJacob Faibussowitsch `DMCreateDomainDecomposition()`? 2303bb7acecfSBarry Smith 23041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 2305e30e807fSPeter Brune @*/ 23065d83a8b1SBarry Smith PetscErrorCode DMCreateDomainDecompositionScatters(DM dm, PetscInt n, DM *subdms, VecScatter *iscat[], VecScatter *oscat[], VecScatter *gscat[]) 2307d71ae5a4SJacob Faibussowitsch { 2308e30e807fSPeter Brune PetscFunctionBegin; 2309e30e807fSPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 23104f572ea9SToby Isaac PetscAssertPointer(subdms, 3); 2311dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createddscatters, n, subdms, iscat, oscat, gscat); 23123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2313e7c4fc90SDmitry Karpeev } 2314e7c4fc90SDmitry Karpeev 231547c6ae99SBarry Smith /*@ 2316bb7acecfSBarry Smith DMRefine - Refines a `DM` object using a standard nonadaptive refinement of the underlying mesh 231747c6ae99SBarry Smith 231820f4b53cSBarry Smith Collective 231947c6ae99SBarry Smith 2320d8d19677SJose E. Roman Input Parameters: 2321bb7acecfSBarry Smith + dm - the `DM` object 2322bb7acecfSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`) 232347c6ae99SBarry Smith 232447c6ae99SBarry Smith Output Parameter: 232520f4b53cSBarry Smith . dmf - the refined `DM`, or `NULL` 2326ae0a1c52SMatthew G Knepley 232720f4b53cSBarry Smith Options Database Key: 2328412e9a14SMatthew G. Knepley . -dm_plex_cell_refiner <strategy> - chooses the refinement strategy, e.g. regular, tohex 2329412e9a14SMatthew G. Knepley 233047c6ae99SBarry Smith Level: developer 233147c6ae99SBarry Smith 233220f4b53cSBarry Smith Note: 233320f4b53cSBarry Smith If no refinement was done, the return value is `NULL` 233420f4b53cSBarry Smith 233573ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`, 233673ff1848SBarry Smith `DMRefineHookAdd()`, `DMRefineHookRemove()` 233747c6ae99SBarry Smith @*/ 2338d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefine(DM dm, MPI_Comm comm, DM *dmf) 2339d71ae5a4SJacob Faibussowitsch { 2340c833c3b5SJed Brown DMRefineHookLink link; 234147c6ae99SBarry Smith 234247c6ae99SBarry Smith PetscFunctionBegin; 2343732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 23449566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Refine, dm, 0, 0, 0)); 2345dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, refine, comm, dmf); 23464057135bSMatthew G Knepley if (*dmf) { 234743842a1eSJed Brown (*dmf)->ops->creatematrix = dm->ops->creatematrix; 23488865f1eaSKarl Rupp 23499566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmf)); 23508865f1eaSKarl Rupp 2351644e2e5bSBarry Smith (*dmf)->ctx = dm->ctx; 23520598a293SJed Brown (*dmf)->leveldown = dm->leveldown; 2353656b349aSBarry Smith (*dmf)->levelup = dm->levelup + 1; 23548865f1eaSKarl Rupp 23559566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmf, dm->mattype)); 2356c833c3b5SJed Brown for (link = dm->refinehook; link; link = link->next) { 23571baa6e33SBarry Smith if (link->refinehook) PetscCall((*link->refinehook)(dm, *dmf, link->ctx)); 2358c833c3b5SJed Brown } 2359c833c3b5SJed Brown } 23609566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Refine, dm, 0, 0, 0)); 23613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2362c833c3b5SJed Brown } 2363c833c3b5SJed Brown 2364bb9467b5SJed Brown /*@C 2365c833c3b5SJed Brown DMRefineHookAdd - adds a callback to be run when interpolating a nonlinear problem to a finer grid 2366c833c3b5SJed Brown 236720f4b53cSBarry Smith Logically Collective; No Fortran Support 2368c833c3b5SJed Brown 23694165533cSJose E. Roman Input Parameters: 2370bb7acecfSBarry Smith + coarse - `DM` on which to run a hook when interpolating to a finer level 2371bb7acecfSBarry Smith . refinehook - function to run when setting up the finer level 2372f826b5fcSPierre Jolivet . interphook - function to run to update data on finer levels (once per `SNESSolve()`) 237320f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2374c833c3b5SJed Brown 237520f4b53cSBarry Smith Calling sequence of `refinehook`: 2376bb7acecfSBarry Smith + coarse - coarse level `DM` 2377bb7acecfSBarry Smith . fine - fine level `DM` to interpolate problem to 2378c833c3b5SJed Brown - ctx - optional user-defined function context 2379c833c3b5SJed Brown 238020f4b53cSBarry Smith Calling sequence of `interphook`: 2381bb7acecfSBarry Smith + coarse - coarse level `DM` 2382c833c3b5SJed Brown . interp - matrix interpolating a coarse-level solution to the finer grid 2383bb7acecfSBarry Smith . fine - fine level `DM` to update 2384c833c3b5SJed Brown - ctx - optional user-defined function context 2385c833c3b5SJed Brown 2386c833c3b5SJed Brown Level: advanced 2387c833c3b5SJed Brown 2388c833c3b5SJed Brown Notes: 2389bb7acecfSBarry Smith This function is only needed if auxiliary data that is attached to the `DM`s via, for example, `PetscObjectCompose()`, needs to be 2390bb7acecfSBarry Smith passed to fine grids while grid sequencing. 2391bb7acecfSBarry Smith 2392bb7acecfSBarry Smith The actual interpolation is done when `DMInterpolate()` is called. 2393c833c3b5SJed Brown 2394c833c3b5SJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 2395c833c3b5SJed Brown 23961cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2397c833c3b5SJed Brown @*/ 2398a4e35b19SJacob Faibussowitsch PetscErrorCode DMRefineHookAdd(DM coarse, PetscErrorCode (*refinehook)(DM coarse, DM fine, void *ctx), PetscErrorCode (*interphook)(DM coarse, Mat interp, DM fine, void *ctx), void *ctx) 2399d71ae5a4SJacob Faibussowitsch { 2400c833c3b5SJed Brown DMRefineHookLink link, *p; 2401c833c3b5SJed Brown 2402c833c3b5SJed Brown PetscFunctionBegin; 2403c833c3b5SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 24043d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 24053ba16761SJacob Faibussowitsch if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 24063d8e3701SJed Brown } 24079566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2408c833c3b5SJed Brown link->refinehook = refinehook; 2409c833c3b5SJed Brown link->interphook = interphook; 2410c833c3b5SJed Brown link->ctx = ctx; 24110298fd71SBarry Smith link->next = NULL; 2412c833c3b5SJed Brown *p = link; 24133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2414c833c3b5SJed Brown } 2415c833c3b5SJed Brown 24163d8e3701SJed Brown /*@C 2417bb7acecfSBarry Smith DMRefineHookRemove - remove a callback from the list of hooks, that have been set with `DMRefineHookAdd()`, to be run when interpolating 2418bb7acecfSBarry Smith a nonlinear problem to a finer grid 24193d8e3701SJed Brown 242020f4b53cSBarry Smith Logically Collective; No Fortran Support 24213d8e3701SJed Brown 24224165533cSJose E. Roman Input Parameters: 2423bb7acecfSBarry Smith + coarse - the `DM` on which to run a hook when restricting to a coarser level 2424bb7acecfSBarry Smith . refinehook - function to run when setting up a finer level 2425bb7acecfSBarry Smith . interphook - function to run to update data on finer levels 242620f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 24273d8e3701SJed Brown 24283d8e3701SJed Brown Level: advanced 24293d8e3701SJed Brown 2430bb7acecfSBarry Smith Note: 24313d8e3701SJed Brown This function does nothing if the hook is not in the list. 24323d8e3701SJed Brown 24331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `DMCoarsenHookRemove()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 24343d8e3701SJed Brown @*/ 2435d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookRemove(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx) 2436d71ae5a4SJacob Faibussowitsch { 24373d8e3701SJed Brown DMRefineHookLink link, *p; 24383d8e3701SJed Brown 24393d8e3701SJed Brown PetscFunctionBegin; 24403d8e3701SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 24413d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 24423d8e3701SJed Brown if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) { 24433d8e3701SJed Brown link = *p; 24443d8e3701SJed Brown *p = link->next; 24459566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 24463d8e3701SJed Brown break; 24473d8e3701SJed Brown } 24483d8e3701SJed Brown } 24493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24503d8e3701SJed Brown } 24513d8e3701SJed Brown 2452c833c3b5SJed Brown /*@ 2453bb7acecfSBarry Smith DMInterpolate - interpolates user-defined problem data attached to a `DM` to a finer `DM` by running hooks registered by `DMRefineHookAdd()` 2454c833c3b5SJed Brown 2455c833c3b5SJed Brown Collective if any hooks are 2456c833c3b5SJed Brown 24574165533cSJose E. Roman Input Parameters: 2458bb7acecfSBarry Smith + coarse - coarser `DM` to use as a base 2459bb7acecfSBarry Smith . interp - interpolation matrix, apply using `MatInterpolate()` 2460bb7acecfSBarry Smith - fine - finer `DM` to update 2461c833c3b5SJed Brown 2462c833c3b5SJed Brown Level: developer 2463c833c3b5SJed Brown 246473ff1848SBarry Smith Developer Note: 2465bb7acecfSBarry Smith This routine is called `DMInterpolate()` while the hook is called `DMRefineHookAdd()`. It would be better to have an 2466bb7acecfSBarry Smith an API with consistent terminology. 2467bb7acecfSBarry Smith 24681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `MatInterpolate()` 2469c833c3b5SJed Brown @*/ 2470d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolate(DM coarse, Mat interp, DM fine) 2471d71ae5a4SJacob Faibussowitsch { 2472c833c3b5SJed Brown DMRefineHookLink link; 2473c833c3b5SJed Brown 2474c833c3b5SJed Brown PetscFunctionBegin; 2475c833c3b5SJed Brown for (link = fine->refinehook; link; link = link->next) { 24761baa6e33SBarry Smith if (link->interphook) PetscCall((*link->interphook)(coarse, interp, fine, link->ctx)); 24774057135bSMatthew G Knepley } 24783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 247947c6ae99SBarry Smith } 248047c6ae99SBarry Smith 2481eb3f98d2SBarry Smith /*@ 24821f3379b2SToby Isaac DMInterpolateSolution - Interpolates a solution from a coarse mesh to a fine mesh. 24831f3379b2SToby Isaac 248420f4b53cSBarry Smith Collective 24851f3379b2SToby Isaac 24864165533cSJose E. Roman Input Parameters: 2487bb7acecfSBarry Smith + coarse - coarse `DM` 2488bb7acecfSBarry Smith . fine - fine `DM` 2489bb7acecfSBarry Smith . interp - (optional) the matrix computed by `DMCreateInterpolation()`. Implementations may not need this, but if it 2490bb7acecfSBarry Smith is available it can avoid some recomputation. If it is provided, `MatInterpolate()` will be used if 2491bb7acecfSBarry Smith the coarse `DM` does not have a specialized implementation. 24921f3379b2SToby Isaac - coarseSol - solution on the coarse mesh 24931f3379b2SToby Isaac 24944165533cSJose E. Roman Output Parameter: 24951f3379b2SToby Isaac . fineSol - the interpolation of coarseSol to the fine mesh 24961f3379b2SToby Isaac 24971f3379b2SToby Isaac Level: developer 24981f3379b2SToby Isaac 2499bb7acecfSBarry Smith Note: 2500bb7acecfSBarry Smith This function exists because the interpolation of a solution vector between meshes is not always a linear 25011f3379b2SToby Isaac map. For example, if a boundary value problem has an inhomogeneous Dirichlet boundary condition that is compressed 25021f3379b2SToby Isaac out of the solution vector. Or if interpolation is inherently a nonlinear operation, such as a method using 25031f3379b2SToby Isaac slope-limiting reconstruction. 25041f3379b2SToby Isaac 250573ff1848SBarry Smith Developer Note: 2506bb7acecfSBarry Smith This doesn't just interpolate "solutions" so its API name is questionable. 2507bb7acecfSBarry Smith 25081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMInterpolate()`, `DMCreateInterpolation()` 25091f3379b2SToby Isaac @*/ 2510d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolateSolution(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol) 2511d71ae5a4SJacob Faibussowitsch { 25121f3379b2SToby Isaac PetscErrorCode (*interpsol)(DM, DM, Mat, Vec, Vec) = NULL; 25131f3379b2SToby Isaac 25141f3379b2SToby Isaac PetscFunctionBegin; 25151f3379b2SToby Isaac PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 25161f3379b2SToby Isaac if (interp) PetscValidHeaderSpecific(interp, MAT_CLASSID, 3); 25171f3379b2SToby Isaac PetscValidHeaderSpecific(coarseSol, VEC_CLASSID, 4); 25181f3379b2SToby Isaac PetscValidHeaderSpecific(fineSol, VEC_CLASSID, 5); 25191f3379b2SToby Isaac 25209566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)coarse, "DMInterpolateSolution_C", &interpsol)); 25211f3379b2SToby Isaac if (interpsol) { 25229566063dSJacob Faibussowitsch PetscCall((*interpsol)(coarse, fine, interp, coarseSol, fineSol)); 25231f3379b2SToby Isaac } else if (interp) { 25249566063dSJacob Faibussowitsch PetscCall(MatInterpolate(interp, coarseSol, fineSol)); 252598921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)coarse), PETSC_ERR_SUP, "DM %s does not implement DMInterpolateSolution()", ((PetscObject)coarse)->type_name); 25263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25271f3379b2SToby Isaac } 25281f3379b2SToby Isaac 25291f3379b2SToby Isaac /*@ 2530bb7acecfSBarry Smith DMGetRefineLevel - Gets the number of refinements that have generated this `DM` from some initial `DM`. 2531eb3f98d2SBarry Smith 2532eb3f98d2SBarry Smith Not Collective 2533eb3f98d2SBarry Smith 2534eb3f98d2SBarry Smith Input Parameter: 2535bb7acecfSBarry Smith . dm - the `DM` object 2536eb3f98d2SBarry Smith 2537eb3f98d2SBarry Smith Output Parameter: 2538eb3f98d2SBarry Smith . level - number of refinements 2539eb3f98d2SBarry Smith 2540eb3f98d2SBarry Smith Level: developer 2541eb3f98d2SBarry Smith 2542bb7acecfSBarry Smith Note: 2543bb7acecfSBarry Smith This can be used, by example, to set the number of coarser levels associated with this `DM` for a multigrid solver. 2544bb7acecfSBarry Smith 25451cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2546eb3f98d2SBarry Smith @*/ 2547d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRefineLevel(DM dm, PetscInt *level) 2548d71ae5a4SJacob Faibussowitsch { 2549eb3f98d2SBarry Smith PetscFunctionBegin; 2550eb3f98d2SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2551eb3f98d2SBarry Smith *level = dm->levelup; 25523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2553eb3f98d2SBarry Smith } 2554eb3f98d2SBarry Smith 2555fef3a512SBarry Smith /*@ 2556bb7acecfSBarry Smith DMSetRefineLevel - Sets the number of refinements that have generated this `DM`. 2557fef3a512SBarry Smith 2558fef3a512SBarry Smith Not Collective 2559fef3a512SBarry Smith 2560d8d19677SJose E. Roman Input Parameters: 2561bb7acecfSBarry Smith + dm - the `DM` object 2562fef3a512SBarry Smith - level - number of refinements 2563fef3a512SBarry Smith 2564fef3a512SBarry Smith Level: advanced 2565fef3a512SBarry Smith 256695452b02SPatrick Sanan Notes: 2567bb7acecfSBarry Smith This value is used by `PCMG` to determine how many multigrid levels to use 2568fef3a512SBarry Smith 2569bb7acecfSBarry Smith The values are usually set automatically by the process that is causing the refinements of an initial `DM` by calling this routine. 2570bb7acecfSBarry Smith 25711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRefineLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2572fef3a512SBarry Smith @*/ 2573d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRefineLevel(DM dm, PetscInt level) 2574d71ae5a4SJacob Faibussowitsch { 2575fef3a512SBarry Smith PetscFunctionBegin; 2576fef3a512SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2577fef3a512SBarry Smith dm->levelup = level; 25783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2579fef3a512SBarry Smith } 2580fef3a512SBarry Smith 2581d410b0cfSMatthew G. Knepley /*@ 2582bb7acecfSBarry Smith DMExtrude - Extrude a `DM` object from a surface 2583d410b0cfSMatthew G. Knepley 258420f4b53cSBarry Smith Collective 2585d410b0cfSMatthew G. Knepley 2586f1a722f8SMatthew G. Knepley Input Parameters: 2587bb7acecfSBarry Smith + dm - the `DM` object 2588d410b0cfSMatthew G. Knepley - layers - the number of extruded cell layers 2589d410b0cfSMatthew G. Knepley 2590d410b0cfSMatthew G. Knepley Output Parameter: 259120f4b53cSBarry Smith . dme - the extruded `DM`, or `NULL` 2592d410b0cfSMatthew G. Knepley 2593d410b0cfSMatthew G. Knepley Level: developer 2594d410b0cfSMatthew G. Knepley 259520f4b53cSBarry Smith Note: 259620f4b53cSBarry Smith If no extrusion was done, the return value is `NULL` 259720f4b53cSBarry Smith 25981cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()` 2599d410b0cfSMatthew G. Knepley @*/ 2600d71ae5a4SJacob Faibussowitsch PetscErrorCode DMExtrude(DM dm, PetscInt layers, DM *dme) 2601d71ae5a4SJacob Faibussowitsch { 2602d410b0cfSMatthew G. Knepley PetscFunctionBegin; 2603d410b0cfSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2604dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, extrude, layers, dme); 2605d410b0cfSMatthew G. Knepley if (*dme) { 2606d410b0cfSMatthew G. Knepley (*dme)->ops->creatematrix = dm->ops->creatematrix; 26079566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dme)); 2608d410b0cfSMatthew G. Knepley (*dme)->ctx = dm->ctx; 26099566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dme, dm->mattype)); 2610d410b0cfSMatthew G. Knepley } 26113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2612d410b0cfSMatthew G. Knepley } 2613d410b0cfSMatthew G. Knepley 2614d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformDM_Internal(DM dm, DM *tdm) 2615d71ae5a4SJacob Faibussowitsch { 2616ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2617ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26184f572ea9SToby Isaac PetscAssertPointer(tdm, 2); 2619ca3d3a14SMatthew G. Knepley *tdm = dm->transformDM; 26203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2621ca3d3a14SMatthew G. Knepley } 2622ca3d3a14SMatthew G. Knepley 2623d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformVec_Internal(DM dm, Vec *tv) 2624d71ae5a4SJacob Faibussowitsch { 2625ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2626ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26274f572ea9SToby Isaac PetscAssertPointer(tv, 2); 2628ca3d3a14SMatthew G. Knepley *tv = dm->transform; 26293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2630ca3d3a14SMatthew G. Knepley } 2631ca3d3a14SMatthew G. Knepley 2632ca3d3a14SMatthew G. Knepley /*@ 2633bb7acecfSBarry Smith DMHasBasisTransform - Whether the `DM` employs a basis transformation from functions in global vectors to functions in local vectors 2634ca3d3a14SMatthew G. Knepley 2635ca3d3a14SMatthew G. Knepley Input Parameter: 263620f4b53cSBarry Smith . dm - The `DM` 2637ca3d3a14SMatthew G. Knepley 2638ca3d3a14SMatthew G. Knepley Output Parameter: 263920f4b53cSBarry Smith . flg - `PETSC_TRUE` if a basis transformation should be done 2640ca3d3a14SMatthew G. Knepley 2641ca3d3a14SMatthew G. Knepley Level: developer 2642ca3d3a14SMatthew G. Knepley 26431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`, `DMPlexCreateBasisRotation()` 2644ca3d3a14SMatthew G. Knepley @*/ 2645d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasBasisTransform(DM dm, PetscBool *flg) 2646d71ae5a4SJacob Faibussowitsch { 2647ca3d3a14SMatthew G. Knepley Vec tv; 2648ca3d3a14SMatthew G. Knepley 2649ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2650ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26514f572ea9SToby Isaac PetscAssertPointer(flg, 2); 26529566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 2653ca3d3a14SMatthew G. Knepley *flg = tv ? PETSC_TRUE : PETSC_FALSE; 26543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2655ca3d3a14SMatthew G. Knepley } 2656ca3d3a14SMatthew G. Knepley 2657d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConstructBasisTransform_Internal(DM dm) 2658d71ae5a4SJacob Faibussowitsch { 2659ca3d3a14SMatthew G. Knepley PetscSection s, ts; 2660ca3d3a14SMatthew G. Knepley PetscScalar *ta; 2661ca3d3a14SMatthew G. Knepley PetscInt cdim, pStart, pEnd, p, Nf, f, Nc, dof; 2662ca3d3a14SMatthew G. Knepley 2663ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 26649566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 26659566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 26669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 26679566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 26689566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->transformDM)); 26699566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm->transformDM, &ts)); 26709566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(ts, Nf)); 26719566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(ts, pStart, pEnd)); 2672ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26739566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(s, f, &Nc)); 2674ca3d3a14SMatthew G. Knepley /* We could start to label fields by their transformation properties */ 2675ca3d3a14SMatthew G. Knepley if (Nc != cdim) continue; 2676ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 26779566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, p, f, &dof)); 2678ca3d3a14SMatthew G. Knepley if (!dof) continue; 26799566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(ts, p, f, PetscSqr(cdim))); 26809566063dSJacob Faibussowitsch PetscCall(PetscSectionAddDof(ts, p, PetscSqr(cdim))); 2681ca3d3a14SMatthew G. Knepley } 2682ca3d3a14SMatthew G. Knepley } 26839566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(ts)); 26849566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(dm->transformDM, &dm->transform)); 26859566063dSJacob Faibussowitsch PetscCall(VecGetArray(dm->transform, &ta)); 2686ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 2687ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26889566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof)); 2689ca3d3a14SMatthew G. Knepley if (dof) { 2690ca3d3a14SMatthew G. Knepley PetscReal x[3] = {0.0, 0.0, 0.0}; 2691ca3d3a14SMatthew G. Knepley PetscScalar *tva; 2692ca3d3a14SMatthew G. Knepley const PetscScalar *A; 2693ca3d3a14SMatthew G. Knepley 2694ca3d3a14SMatthew G. Knepley /* TODO Get quadrature point for this dual basis vector for coordinate */ 26959566063dSJacob Faibussowitsch PetscCall((*dm->transformGetMatrix)(dm, x, PETSC_TRUE, &A, dm->transformCtx)); 26969566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm->transformDM, p, f, ta, (void *)&tva)); 26979566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tva, A, PetscSqr(cdim))); 2698ca3d3a14SMatthew G. Knepley } 2699ca3d3a14SMatthew G. Knepley } 2700ca3d3a14SMatthew G. Knepley } 27019566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(dm->transform, &ta)); 27023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2703ca3d3a14SMatthew G. Knepley } 2704ca3d3a14SMatthew G. Knepley 2705d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyTransform(DM dm, DM newdm) 2706d71ae5a4SJacob Faibussowitsch { 2707ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2708ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2709ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(newdm, DM_CLASSID, 2); 2710ca3d3a14SMatthew G. Knepley newdm->transformCtx = dm->transformCtx; 2711ca3d3a14SMatthew G. Knepley newdm->transformSetUp = dm->transformSetUp; 2712ca3d3a14SMatthew G. Knepley newdm->transformDestroy = NULL; 2713ca3d3a14SMatthew G. Knepley newdm->transformGetMatrix = dm->transformGetMatrix; 27149566063dSJacob Faibussowitsch if (newdm->transformSetUp) PetscCall(DMConstructBasisTransform_Internal(newdm)); 27153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2716ca3d3a14SMatthew G. Knepley } 2717ca3d3a14SMatthew G. Knepley 2718bb9467b5SJed Brown /*@C 2719bb7acecfSBarry Smith DMGlobalToLocalHookAdd - adds a callback to be run when `DMGlobalToLocal()` is called 2720baf369e7SPeter Brune 272120f4b53cSBarry Smith Logically Collective 2722baf369e7SPeter Brune 27234165533cSJose E. Roman Input Parameters: 2724bb7acecfSBarry Smith + dm - the `DM` 2725bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMGlobalToLocalBegin()` 2726bb7acecfSBarry Smith . endhook - function to run after `DMGlobalToLocalEnd()` has completed 272720f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2728baf369e7SPeter Brune 272920f4b53cSBarry Smith Calling sequence of `beginhook`: 2730a4e35b19SJacob Faibussowitsch + dm - global `DM` 2731baf369e7SPeter Brune . g - global vector 2732baf369e7SPeter Brune . mode - mode 2733baf369e7SPeter Brune . l - local vector 2734baf369e7SPeter Brune - ctx - optional user-defined function context 2735baf369e7SPeter Brune 273620f4b53cSBarry Smith Calling sequence of `endhook`: 2737a4e35b19SJacob Faibussowitsch + dm - global `DM` 2738a4e35b19SJacob Faibussowitsch . g - global vector 2739a4e35b19SJacob Faibussowitsch . mode - mode 2740a4e35b19SJacob Faibussowitsch . l - local vector 2741baf369e7SPeter Brune - ctx - optional user-defined function context 2742baf369e7SPeter Brune 2743baf369e7SPeter Brune Level: advanced 2744baf369e7SPeter Brune 2745bb7acecfSBarry Smith Note: 2746bb7acecfSBarry Smith The hook may be used to provide, for example, values that represent boundary conditions in the local vectors that do not exist on the global vector. 2747bb7acecfSBarry Smith 27481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocal()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2749baf369e7SPeter Brune @*/ 2750a4e35b19SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), PetscErrorCode (*endhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), void *ctx) 2751d71ae5a4SJacob Faibussowitsch { 2752baf369e7SPeter Brune DMGlobalToLocalHookLink link, *p; 2753baf369e7SPeter Brune 2754baf369e7SPeter Brune PetscFunctionBegin; 2755baf369e7SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2756baf369e7SPeter Brune for (p = &dm->gtolhook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 27579566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2758baf369e7SPeter Brune link->beginhook = beginhook; 2759baf369e7SPeter Brune link->endhook = endhook; 2760baf369e7SPeter Brune link->ctx = ctx; 27610298fd71SBarry Smith link->next = NULL; 2762baf369e7SPeter Brune *p = link; 27633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2764baf369e7SPeter Brune } 2765baf369e7SPeter Brune 2766d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGlobalToLocalHook_Constraints(DM dm, Vec g, InsertMode mode, Vec l, void *ctx) 2767d71ae5a4SJacob Faibussowitsch { 27684c274da1SToby Isaac Mat cMat; 276979769bd5SJed Brown Vec cVec, cBias; 27704c274da1SToby Isaac PetscSection section, cSec; 27714c274da1SToby Isaac PetscInt pStart, pEnd, p, dof; 27724c274da1SToby Isaac 27734c274da1SToby Isaac PetscFunctionBegin; 2774a4e35b19SJacob Faibussowitsch (void)g; 2775a4e35b19SJacob Faibussowitsch (void)ctx; 27764c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 27779566063dSJacob Faibussowitsch PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, &cBias)); 27784c274da1SToby Isaac if (cMat && (mode == INSERT_VALUES || mode == INSERT_ALL_VALUES || mode == INSERT_BC_VALUES)) { 27795db9a05bSToby Isaac PetscInt nRows; 27805db9a05bSToby Isaac 27819566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 27823ba16761SJacob Faibussowitsch if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS); 27839566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 27849566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 27859566063dSJacob Faibussowitsch PetscCall(MatMult(cMat, l, cVec)); 27869566063dSJacob Faibussowitsch if (cBias) PetscCall(VecAXPY(cVec, 1., cBias)); 27879566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 27884c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 27899566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 27904c274da1SToby Isaac if (dof) { 27914c274da1SToby Isaac PetscScalar *vals; 27929566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(cVec, cSec, p, &vals)); 27939566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(l, section, p, vals, INSERT_ALL_VALUES)); 27944c274da1SToby Isaac } 27954c274da1SToby Isaac } 27969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 27974c274da1SToby Isaac } 27983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27994c274da1SToby Isaac } 28004c274da1SToby Isaac 280147c6ae99SBarry Smith /*@ 280201729b5cSPatrick Sanan DMGlobalToLocal - update local vectors from global vector 280301729b5cSPatrick Sanan 280420f4b53cSBarry Smith Neighbor-wise Collective 280501729b5cSPatrick Sanan 280601729b5cSPatrick Sanan Input Parameters: 2807bb7acecfSBarry Smith + dm - the `DM` object 280801729b5cSPatrick Sanan . g - the global vector 2809bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 281001729b5cSPatrick Sanan - l - the local vector 281101729b5cSPatrick Sanan 281220f4b53cSBarry Smith Level: beginner 281320f4b53cSBarry Smith 281401729b5cSPatrick Sanan Notes: 2815bb7acecfSBarry Smith The communication involved in this update can be overlapped with computation by instead using 2816bb7acecfSBarry Smith `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()`. 2817bb7acecfSBarry Smith 2818bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 281901729b5cSPatrick Sanan 28201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocalHookAdd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, 282160225df5SJacob Faibussowitsch `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, 2822bb7acecfSBarry Smith `DMGlobalToLocalBegin()` `DMGlobalToLocalEnd()` 282301729b5cSPatrick Sanan @*/ 2824d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocal(DM dm, Vec g, InsertMode mode, Vec l) 2825d71ae5a4SJacob Faibussowitsch { 282601729b5cSPatrick Sanan PetscFunctionBegin; 28279566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, g, mode, l)); 28289566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, g, mode, l)); 28293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 283001729b5cSPatrick Sanan } 283101729b5cSPatrick Sanan 283201729b5cSPatrick Sanan /*@ 283347c6ae99SBarry Smith DMGlobalToLocalBegin - Begins updating local vectors from global vector 283447c6ae99SBarry Smith 283520f4b53cSBarry Smith Neighbor-wise Collective 283647c6ae99SBarry Smith 283747c6ae99SBarry Smith Input Parameters: 2838bb7acecfSBarry Smith + dm - the `DM` object 283947c6ae99SBarry Smith . g - the global vector 2840bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 284147c6ae99SBarry Smith - l - the local vector 284247c6ae99SBarry Smith 284301729b5cSPatrick Sanan Level: intermediate 284447c6ae99SBarry Smith 2845bb7acecfSBarry Smith Notes: 2846bb7acecfSBarry Smith The operation is completed with `DMGlobalToLocalEnd()` 2847bb7acecfSBarry Smith 2848bb7acecfSBarry Smith One can perform local computations between the `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` to overlap communication and computation 2849bb7acecfSBarry Smith 2850bb7acecfSBarry Smith `DMGlobalToLocal()` is a short form of `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` 2851bb7acecfSBarry Smith 2852bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 2853bb7acecfSBarry Smith 285460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()` 285547c6ae99SBarry Smith @*/ 2856d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 2857d71ae5a4SJacob Faibussowitsch { 28587128ae9fSMatthew G Knepley PetscSF sf; 2859baf369e7SPeter Brune DMGlobalToLocalHookLink link; 286047c6ae99SBarry Smith 286147c6ae99SBarry Smith PetscFunctionBegin; 2862171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2863baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 28641baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, g, mode, l, link->ctx)); 2865baf369e7SPeter Brune } 28669566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 28677128ae9fSMatthew G Knepley if (sf) { 2868ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2869ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2870d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 28717128ae9fSMatthew G Knepley 28727a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 28739566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 28749566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 28759566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(sf, MPIU_SCALAR, gmtype, gArray, lmtype, lArray, MPI_REPLACE)); 28769566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 28779566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 28787128ae9fSMatthew G Knepley } else { 2879fa1e479aSStefano Zampini PetscUseTypeMethod(dm, globaltolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 28807128ae9fSMatthew G Knepley } 28813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 288247c6ae99SBarry Smith } 288347c6ae99SBarry Smith 288447c6ae99SBarry Smith /*@ 288547c6ae99SBarry Smith DMGlobalToLocalEnd - Ends updating local vectors from global vector 288647c6ae99SBarry Smith 288720f4b53cSBarry Smith Neighbor-wise Collective 288847c6ae99SBarry Smith 288947c6ae99SBarry Smith Input Parameters: 2890bb7acecfSBarry Smith + dm - the `DM` object 289147c6ae99SBarry Smith . g - the global vector 2892bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 289347c6ae99SBarry Smith - l - the local vector 289447c6ae99SBarry Smith 289501729b5cSPatrick Sanan Level: intermediate 289647c6ae99SBarry Smith 2897bb7acecfSBarry Smith Note: 2898bb7acecfSBarry Smith See `DMGlobalToLocalBegin()` for details. 2899bb7acecfSBarry Smith 290060225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()` 290147c6ae99SBarry Smith @*/ 2902d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 2903d71ae5a4SJacob Faibussowitsch { 29047128ae9fSMatthew G Knepley PetscSF sf; 2905ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2906ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2907ca3d3a14SMatthew G. Knepley PetscBool transform; 2908baf369e7SPeter Brune DMGlobalToLocalHookLink link; 2909d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 291047c6ae99SBarry Smith 291147c6ae99SBarry Smith PetscFunctionBegin; 2912171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29139566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 29149566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 29157128ae9fSMatthew G Knepley if (sf) { 29167a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 29177128ae9fSMatthew G Knepley 29189566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 29199566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 29209566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, gArray, lArray, MPI_REPLACE)); 29219566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 29229566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 29239566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexGlobalToLocalBasis(dm, l)); 29247128ae9fSMatthew G Knepley } else { 2925fa1e479aSStefano Zampini PetscUseTypeMethod(dm, globaltolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 29267128ae9fSMatthew G Knepley } 29279566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalHook_Constraints(dm, g, mode, l, NULL)); 2928baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 29299566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 2930baf369e7SPeter Brune } 29313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 293247c6ae99SBarry Smith } 293347c6ae99SBarry Smith 2934d4d07f1eSToby Isaac /*@C 2935d4d07f1eSToby Isaac DMLocalToGlobalHookAdd - adds a callback to be run when a local to global is called 2936d4d07f1eSToby Isaac 293720f4b53cSBarry Smith Logically Collective 2938d4d07f1eSToby Isaac 29394165533cSJose E. Roman Input Parameters: 2940bb7acecfSBarry Smith + dm - the `DM` 2941bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMLocalToGlobalBegin()` 2942bb7acecfSBarry Smith . endhook - function to run after `DMLocalToGlobalEnd()` has completed 294320f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2944d4d07f1eSToby Isaac 294520f4b53cSBarry Smith Calling sequence of `beginhook`: 2946a4e35b19SJacob Faibussowitsch + global - global `DM` 2947d4d07f1eSToby Isaac . l - local vector 2948d4d07f1eSToby Isaac . mode - mode 2949d4d07f1eSToby Isaac . g - global vector 2950d4d07f1eSToby Isaac - ctx - optional user-defined function context 2951d4d07f1eSToby Isaac 295220f4b53cSBarry Smith Calling sequence of `endhook`: 2953bb7acecfSBarry Smith + global - global `DM` 2954d4d07f1eSToby Isaac . l - local vector 2955d4d07f1eSToby Isaac . mode - mode 2956d4d07f1eSToby Isaac . g - global vector 2957d4d07f1eSToby Isaac - ctx - optional user-defined function context 2958d4d07f1eSToby Isaac 2959d4d07f1eSToby Isaac Level: advanced 2960d4d07f1eSToby Isaac 29611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMRefineHookAdd()`, `DMGlobalToLocalHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2962d4d07f1eSToby Isaac @*/ 2963a4e35b19SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), PetscErrorCode (*endhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), void *ctx) 2964d71ae5a4SJacob Faibussowitsch { 2965d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, *p; 2966d4d07f1eSToby Isaac 2967d4d07f1eSToby Isaac PetscFunctionBegin; 2968d4d07f1eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2969d4d07f1eSToby Isaac for (p = &dm->ltoghook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 29709566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2971d4d07f1eSToby Isaac link->beginhook = beginhook; 2972d4d07f1eSToby Isaac link->endhook = endhook; 2973d4d07f1eSToby Isaac link->ctx = ctx; 2974d4d07f1eSToby Isaac link->next = NULL; 2975d4d07f1eSToby Isaac *p = link; 29763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2977d4d07f1eSToby Isaac } 2978d4d07f1eSToby Isaac 2979d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMLocalToGlobalHook_Constraints(DM dm, Vec l, InsertMode mode, Vec g, void *ctx) 2980d71ae5a4SJacob Faibussowitsch { 29814c274da1SToby Isaac PetscFunctionBegin; 2982a4e35b19SJacob Faibussowitsch (void)g; 2983a4e35b19SJacob Faibussowitsch (void)ctx; 29844c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29852b6b7d09SToby Isaac if (mode == ADD_VALUES || mode == ADD_ALL_VALUES || mode == ADD_BC_VALUES) { 29862b6b7d09SToby Isaac Mat cMat; 29872b6b7d09SToby Isaac Vec cVec; 29885db9a05bSToby Isaac PetscInt nRows; 29892b6b7d09SToby Isaac PetscSection section, cSec; 29902b6b7d09SToby Isaac PetscInt pStart, pEnd, p, dof; 29912b6b7d09SToby Isaac 29922b6b7d09SToby Isaac PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, NULL)); 29932b6b7d09SToby Isaac if (!cMat) PetscFunctionReturn(PETSC_SUCCESS); 29945db9a05bSToby Isaac 29959566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 29963ba16761SJacob Faibussowitsch if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS); 29979566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 29989566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 29999566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 30004c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 30019566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 30024c274da1SToby Isaac if (dof) { 30034c274da1SToby Isaac PetscInt d; 30044c274da1SToby Isaac PetscScalar *vals; 30059566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(l, section, p, &vals)); 30069566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(cVec, cSec, p, vals, mode)); 30074c274da1SToby Isaac /* for this to be the true transpose, we have to zero the values that 30084c274da1SToby Isaac * we just extracted */ 3009ad540459SPierre Jolivet for (d = 0; d < dof; d++) vals[d] = 0.; 30104c274da1SToby Isaac } 30114c274da1SToby Isaac } 30129566063dSJacob Faibussowitsch PetscCall(MatMultTransposeAdd(cMat, cVec, l, l)); 30139566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 30144c274da1SToby Isaac } 30153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30164c274da1SToby Isaac } 301701729b5cSPatrick Sanan /*@ 301801729b5cSPatrick Sanan DMLocalToGlobal - updates global vectors from local vectors 301901729b5cSPatrick Sanan 302020f4b53cSBarry Smith Neighbor-wise Collective 302101729b5cSPatrick Sanan 302201729b5cSPatrick Sanan Input Parameters: 3023bb7acecfSBarry Smith + dm - the `DM` object 302401729b5cSPatrick Sanan . l - the local vector 3025bb7acecfSBarry Smith . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 302601729b5cSPatrick Sanan - g - the global vector 302701729b5cSPatrick Sanan 302820f4b53cSBarry Smith Level: beginner 302920f4b53cSBarry Smith 303001729b5cSPatrick Sanan Notes: 303101729b5cSPatrick Sanan The communication involved in this update can be overlapped with computation by using 3032bb7acecfSBarry Smith `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()`. 303301729b5cSPatrick Sanan 3034bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 3035bb7acecfSBarry Smith 3036bb7acecfSBarry Smith `INSERT_VALUES` is not supported for `DMDA`; in that case simply compute the values directly into a global vector instead of a local one. 3037bb7acecfSBarry Smith 3038bb7acecfSBarry Smith Use `DMLocalToGlobalHookAdd()` to add additional operations that are performed on the data during the update process 303901729b5cSPatrick Sanan 30401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`, `DMLocalToGlobalHookAdd()`, `DMGlobaToLocallHookAdd()` 304101729b5cSPatrick Sanan @*/ 3042d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobal(DM dm, Vec l, InsertMode mode, Vec g) 3043d71ae5a4SJacob Faibussowitsch { 304401729b5cSPatrick Sanan PetscFunctionBegin; 30459566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, l, mode, g)); 30469566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, l, mode, g)); 30473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 304801729b5cSPatrick Sanan } 30494c274da1SToby Isaac 305047c6ae99SBarry Smith /*@ 305101729b5cSPatrick Sanan DMLocalToGlobalBegin - begins updating global vectors from local vectors 30529a42bb27SBarry Smith 305320f4b53cSBarry Smith Neighbor-wise Collective 30549a42bb27SBarry Smith 30559a42bb27SBarry Smith Input Parameters: 3056bb7acecfSBarry Smith + dm - the `DM` object 3057f6813fd5SJed Brown . l - the local vector 3058aa624791SPierre Jolivet . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 30591eb28f2eSBarry Smith - g - the global vector 30609a42bb27SBarry Smith 306120f4b53cSBarry Smith Level: intermediate 306220f4b53cSBarry Smith 306395452b02SPatrick Sanan Notes: 3064bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 3065bb7acecfSBarry Smith 3066bb7acecfSBarry Smith `INSERT_VALUES is` not supported for `DMDA`, in that case simply compute the values directly into a global vector instead of a local one. 3067bb7acecfSBarry Smith 3068bb7acecfSBarry Smith Use `DMLocalToGlobalEnd()` to complete the communication process. 3069bb7acecfSBarry Smith 3070bb7acecfSBarry Smith `DMLocalToGlobal()` is a short form of `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()` 3071bb7acecfSBarry Smith 3072bb7acecfSBarry Smith `DMLocalToGlobalHookAdd()` may be used to provide additional operations that are performed during the update process. 30739a42bb27SBarry Smith 30741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()` 30759a42bb27SBarry Smith @*/ 3076d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalBegin(DM dm, Vec l, InsertMode mode, Vec g) 3077d71ae5a4SJacob Faibussowitsch { 30787128ae9fSMatthew G Knepley PetscSF sf; 307984330215SMatthew G. Knepley PetscSection s, gs; 3080d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3081ca3d3a14SMatthew G. Knepley Vec tmpl; 3082ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3083ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3084fa88e482SJed Brown PetscBool isInsert, transform, l_inplace = PETSC_FALSE, g_inplace = PETSC_FALSE; 3085d0295fc0SJunchao Zhang PetscMemType lmtype = PETSC_MEMTYPE_HOST, gmtype = PETSC_MEMTYPE_HOST; 30869a42bb27SBarry Smith 30879a42bb27SBarry Smith PetscFunctionBegin; 3088171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3089d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 30901baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, l, mode, g, link->ctx)); 3091d4d07f1eSToby Isaac } 30929566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalHook_Constraints(dm, l, mode, g, NULL)); 30939566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 30949566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 30957128ae9fSMatthew G Knepley switch (mode) { 30967128ae9fSMatthew G Knepley case INSERT_VALUES: 30977128ae9fSMatthew G Knepley case INSERT_ALL_VALUES: 3098d71ae5a4SJacob Faibussowitsch case INSERT_BC_VALUES: 3099d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3100d71ae5a4SJacob Faibussowitsch break; 31017128ae9fSMatthew G Knepley case ADD_VALUES: 31027128ae9fSMatthew G Knepley case ADD_ALL_VALUES: 3103d71ae5a4SJacob Faibussowitsch case ADD_BC_VALUES: 3104d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3105d71ae5a4SJacob Faibussowitsch break; 3106d71ae5a4SJacob Faibussowitsch default: 3107d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 31087128ae9fSMatthew G Knepley } 3109ca3d3a14SMatthew G. Knepley if ((sf && !isInsert) || (s && isInsert)) { 31109566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3111ca3d3a14SMatthew G. Knepley if (transform) { 31129566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 31139566063dSJacob Faibussowitsch PetscCall(VecCopy(l, tmpl)); 31149566063dSJacob Faibussowitsch PetscCall(DMPlexLocalToGlobalBasis(dm, tmpl)); 31159566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3116fa88e482SJed Brown } else if (isInsert) { 31179566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l, &lArray)); 3118fa88e482SJed Brown } else { 31199566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, &lmtype)); 3120fa88e482SJed Brown l_inplace = PETSC_TRUE; 3121ca3d3a14SMatthew G. Knepley } 3122fa88e482SJed Brown if (s && isInsert) { 31239566063dSJacob Faibussowitsch PetscCall(VecGetArray(g, &gArray)); 3124fa88e482SJed Brown } else { 31259566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, &gmtype)); 3126fa88e482SJed Brown g_inplace = PETSC_TRUE; 3127fa88e482SJed Brown } 3128ca3d3a14SMatthew G. Knepley if (sf && !isInsert) { 31299566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(sf, MPIU_SCALAR, lmtype, lArray, gmtype, gArray, MPIU_SUM)); 313084330215SMatthew G. Knepley } else if (s && isInsert) { 313184330215SMatthew G. Knepley PetscInt gStart, pStart, pEnd, p; 313284330215SMatthew G. Knepley 31339566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gs)); 31349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 31359566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(g, &gStart, NULL)); 313684330215SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 3137b3b16f48SMatthew G. Knepley PetscInt dof, gdof, cdof, gcdof, off, goff, d, e; 313884330215SMatthew G. Knepley 31399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s, p, &dof)); 31409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(gs, p, &gdof)); 31419566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s, p, &cdof)); 31429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(gs, p, &gcdof)); 31439566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(s, p, &off)); 31449566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(gs, p, &goff)); 3145b3b16f48SMatthew G. Knepley /* Ignore off-process data and points with no global data */ 314603442857SMatthew G. Knepley if (!gdof || goff < 0) continue; 31477a8be351SBarry Smith PetscCheck(dof == gdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 3148b3b16f48SMatthew G. Knepley /* If no constraints are enforced in the global vector */ 3149b3b16f48SMatthew G. Knepley if (!gcdof) { 315084330215SMatthew G. Knepley for (d = 0; d < dof; ++d) gArray[goff - gStart + d] = lArray[off + d]; 3151b3b16f48SMatthew G. Knepley /* If constraints are enforced in the global vector */ 3152b3b16f48SMatthew G. Knepley } else if (cdof == gcdof) { 315384330215SMatthew G. Knepley const PetscInt *cdofs; 315484330215SMatthew G. Knepley PetscInt cind = 0; 315584330215SMatthew G. Knepley 31569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(s, p, &cdofs)); 3157b3b16f48SMatthew G. Knepley for (d = 0, e = 0; d < dof; ++d) { 31589371c9d4SSatish Balay if ((cind < cdof) && (d == cdofs[cind])) { 31599371c9d4SSatish Balay ++cind; 31609371c9d4SSatish Balay continue; 31619371c9d4SSatish Balay } 3162b3b16f48SMatthew G. Knepley gArray[goff - gStart + e++] = lArray[off + d]; 316384330215SMatthew G. Knepley } 31647a8be351SBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 316584330215SMatthew G. Knepley } 3166ca3d3a14SMatthew G. Knepley } 3167fa88e482SJed Brown if (g_inplace) { 31689566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 3169fa88e482SJed Brown } else { 31709566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(g, &gArray)); 3171fa88e482SJed Brown } 3172ca3d3a14SMatthew G. Knepley if (transform) { 31739566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 31749566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3175fa88e482SJed Brown } else if (l_inplace) { 31769566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3177ca3d3a14SMatthew G. Knepley } else { 31789566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l, &lArray)); 3179ca3d3a14SMatthew G. Knepley } 31807128ae9fSMatthew G Knepley } else { 3181fa1e479aSStefano Zampini PetscUseTypeMethod(dm, localtoglobalbegin, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g); 31827128ae9fSMatthew G Knepley } 31833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31849a42bb27SBarry Smith } 31859a42bb27SBarry Smith 31869a42bb27SBarry Smith /*@ 31879a42bb27SBarry Smith DMLocalToGlobalEnd - updates global vectors from local vectors 318847c6ae99SBarry Smith 318920f4b53cSBarry Smith Neighbor-wise Collective 319047c6ae99SBarry Smith 319147c6ae99SBarry Smith Input Parameters: 3192bb7acecfSBarry Smith + dm - the `DM` object 3193f6813fd5SJed Brown . l - the local vector 3194bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 3195f6813fd5SJed Brown - g - the global vector 319647c6ae99SBarry Smith 319701729b5cSPatrick Sanan Level: intermediate 319847c6ae99SBarry Smith 3199bb7acecfSBarry Smith Note: 3200bb7acecfSBarry Smith See `DMLocalToGlobalBegin()` for full details 3201bb7acecfSBarry Smith 320260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()` 320347c6ae99SBarry Smith @*/ 3204d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalEnd(DM dm, Vec l, InsertMode mode, Vec g) 3205d71ae5a4SJacob Faibussowitsch { 32067128ae9fSMatthew G Knepley PetscSF sf; 320784330215SMatthew G. Knepley PetscSection s; 3208d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3209ca3d3a14SMatthew G. Knepley PetscBool isInsert, transform; 321047c6ae99SBarry Smith 321147c6ae99SBarry Smith PetscFunctionBegin; 3212171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32139566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 32149566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 32157128ae9fSMatthew G Knepley switch (mode) { 32167128ae9fSMatthew G Knepley case INSERT_VALUES: 3217d71ae5a4SJacob Faibussowitsch case INSERT_ALL_VALUES: 3218d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3219d71ae5a4SJacob Faibussowitsch break; 32207128ae9fSMatthew G Knepley case ADD_VALUES: 3221d71ae5a4SJacob Faibussowitsch case ADD_ALL_VALUES: 3222d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3223d71ae5a4SJacob Faibussowitsch break; 3224d71ae5a4SJacob Faibussowitsch default: 3225d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 32267128ae9fSMatthew G Knepley } 322784330215SMatthew G. Knepley if (sf && !isInsert) { 3228ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3229ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3230ca3d3a14SMatthew G. Knepley Vec tmpl; 323184330215SMatthew G. Knepley 32329566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3233ca3d3a14SMatthew G. Knepley if (transform) { 32349566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 32359566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3236ca3d3a14SMatthew G. Knepley } else { 32379566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, NULL)); 3238ca3d3a14SMatthew G. Knepley } 32399566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, NULL)); 32409566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_SCALAR, lArray, gArray, MPIU_SUM)); 3241ca3d3a14SMatthew G. Knepley if (transform) { 32429566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 32439566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3244ca3d3a14SMatthew G. Knepley } else { 32459566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3246ca3d3a14SMatthew G. Knepley } 32479566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 324884330215SMatthew G. Knepley } else if (s && isInsert) { 32497128ae9fSMatthew G Knepley } else { 3250fa1e479aSStefano Zampini PetscUseTypeMethod(dm, localtoglobalend, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g); 32517128ae9fSMatthew G Knepley } 3252d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 32539566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 3254d4d07f1eSToby Isaac } 32553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 325647c6ae99SBarry Smith } 325747c6ae99SBarry Smith 3258f089877aSRichard Tran Mills /*@ 3259a4e35b19SJacob Faibussowitsch DMLocalToLocalBegin - Begins the process of mapping values from a local vector (that include 3260a4e35b19SJacob Faibussowitsch ghost points that contain irrelevant values) to another local vector where the ghost points 3261a4e35b19SJacob Faibussowitsch in the second are set correctly from values on other MPI ranks. 3262f089877aSRichard Tran Mills 326320f4b53cSBarry Smith Neighbor-wise Collective 3264f089877aSRichard Tran Mills 3265f089877aSRichard Tran Mills Input Parameters: 3266bb7acecfSBarry Smith + dm - the `DM` object 3267bc0a1609SRichard Tran Mills . g - the original local vector 3268bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3269f089877aSRichard Tran Mills 3270bc0a1609SRichard Tran Mills Output Parameter: 3271bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3272f089877aSRichard Tran Mills 3273f089877aSRichard Tran Mills Level: intermediate 3274f089877aSRichard Tran Mills 327573ff1848SBarry Smith Note: 3276a4e35b19SJacob Faibussowitsch Must be followed by `DMLocalToLocalEnd()`. 3277a4e35b19SJacob Faibussowitsch 327860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3279f089877aSRichard Tran Mills @*/ 3280d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 3281d71ae5a4SJacob Faibussowitsch { 3282f089877aSRichard Tran Mills PetscFunctionBegin; 3283f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32849f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 32859f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 32869f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 32873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3288f089877aSRichard Tran Mills } 3289f089877aSRichard Tran Mills 3290f089877aSRichard Tran Mills /*@ 3291bb7acecfSBarry Smith DMLocalToLocalEnd - Maps from a local vector to another local vector where the ghost 3292bb7acecfSBarry Smith points in the second are set correctly. Must be preceded by `DMLocalToLocalBegin()`. 3293f089877aSRichard Tran Mills 329420f4b53cSBarry Smith Neighbor-wise Collective 3295f089877aSRichard Tran Mills 3296f089877aSRichard Tran Mills Input Parameters: 329760225df5SJacob Faibussowitsch + dm - the `DM` object 3298bc0a1609SRichard Tran Mills . g - the original local vector 3299bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3300f089877aSRichard Tran Mills 3301bc0a1609SRichard Tran Mills Output Parameter: 3302bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3303f089877aSRichard Tran Mills 3304f089877aSRichard Tran Mills Level: intermediate 3305f089877aSRichard Tran Mills 330660225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3307f089877aSRichard Tran Mills @*/ 3308d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 3309d71ae5a4SJacob Faibussowitsch { 3310f089877aSRichard Tran Mills PetscFunctionBegin; 3311f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 33129f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 33139f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 33149f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 33153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3316f089877aSRichard Tran Mills } 3317f089877aSRichard Tran Mills 331847c6ae99SBarry Smith /*@ 3319bb7acecfSBarry Smith DMCoarsen - Coarsens a `DM` object using a standard, non-adaptive coarsening of the underlying mesh 332047c6ae99SBarry Smith 332120f4b53cSBarry Smith Collective 332247c6ae99SBarry Smith 3323d8d19677SJose E. Roman Input Parameters: 3324bb7acecfSBarry Smith + dm - the `DM` object 332520f4b53cSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`) 332647c6ae99SBarry Smith 332747c6ae99SBarry Smith Output Parameter: 3328bb7acecfSBarry Smith . dmc - the coarsened `DM` 332947c6ae99SBarry Smith 333047c6ae99SBarry Smith Level: developer 333147c6ae99SBarry Smith 333273ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`, 333373ff1848SBarry Smith `DMCoarsenHookAdd()`, `DMCoarsenHookRemove()` 333447c6ae99SBarry Smith @*/ 3335d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsen(DM dm, MPI_Comm comm, DM *dmc) 3336d71ae5a4SJacob Faibussowitsch { 3337b17ce1afSJed Brown DMCoarsenHookLink link; 333847c6ae99SBarry Smith 333947c6ae99SBarry Smith PetscFunctionBegin; 3340171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 33419566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Coarsen, dm, 0, 0, 0)); 3342dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, coarsen, comm, dmc); 3343b9d85ea2SLisandro Dalcin if (*dmc) { 3344a3574896SRichard Tran Mills (*dmc)->bind_below = dm->bind_below; /* Propagate this from parent DM; otherwise -dm_bind_below will be useless for multigrid cases. */ 33459566063dSJacob Faibussowitsch PetscCall(DMSetCoarseDM(dm, *dmc)); 334643842a1eSJed Brown (*dmc)->ops->creatematrix = dm->ops->creatematrix; 33479566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmc)); 3348644e2e5bSBarry Smith (*dmc)->ctx = dm->ctx; 33490598a293SJed Brown (*dmc)->levelup = dm->levelup; 3350656b349aSBarry Smith (*dmc)->leveldown = dm->leveldown + 1; 33519566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmc, dm->mattype)); 3352b17ce1afSJed Brown for (link = dm->coarsenhook; link; link = link->next) { 33539566063dSJacob Faibussowitsch if (link->coarsenhook) PetscCall((*link->coarsenhook)(dm, *dmc, link->ctx)); 3354b17ce1afSJed Brown } 3355b9d85ea2SLisandro Dalcin } 33569566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Coarsen, dm, 0, 0, 0)); 33577a8be351SBarry Smith PetscCheck(*dmc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "NULL coarse mesh produced"); 33583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3359b17ce1afSJed Brown } 3360b17ce1afSJed Brown 3361bb9467b5SJed Brown /*@C 3362b17ce1afSJed Brown DMCoarsenHookAdd - adds a callback to be run when restricting a nonlinear problem to the coarse grid 3363b17ce1afSJed Brown 336420f4b53cSBarry Smith Logically Collective; No Fortran Support 3365b17ce1afSJed Brown 33664165533cSJose E. Roman Input Parameters: 3367bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3368b17ce1afSJed Brown . coarsenhook - function to run when setting up a coarser level 3369bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels (called once per `SNESSolve()`) 337020f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3371b17ce1afSJed Brown 337220f4b53cSBarry Smith Calling sequence of `coarsenhook`: 3373bb7acecfSBarry Smith + fine - fine level `DM` 3374bb7acecfSBarry Smith . coarse - coarse level `DM` to restrict problem to 3375b17ce1afSJed Brown - ctx - optional user-defined function context 3376b17ce1afSJed Brown 337720f4b53cSBarry Smith Calling sequence of `restricthook`: 3378bb7acecfSBarry Smith + fine - fine level `DM` 3379bb7acecfSBarry Smith . mrestrict - matrix restricting a fine-level solution to the coarse grid, usually the transpose of the interpolation 3380c833c3b5SJed Brown . rscale - scaling vector for restriction 3381c833c3b5SJed Brown . inject - matrix restricting by injection 3382b17ce1afSJed Brown . coarse - coarse level DM to update 3383b17ce1afSJed Brown - ctx - optional user-defined function context 3384b17ce1afSJed Brown 3385b17ce1afSJed Brown Level: advanced 3386b17ce1afSJed Brown 3387b17ce1afSJed Brown Notes: 3388bb7acecfSBarry Smith This function is only needed if auxiliary data, attached to the `DM` with `PetscObjectCompose()`, needs to be set up or passed from the fine `DM` to the coarse `DM`. 3389b17ce1afSJed Brown 3390b17ce1afSJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 3391b17ce1afSJed Brown 3392b17ce1afSJed Brown In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3393bb7acecfSBarry Smith extract the finest level information from its context (instead of from the `SNES`). 3394b17ce1afSJed Brown 3395bb7acecfSBarry Smith The hooks are automatically called by `DMRestrict()` 3396bb7acecfSBarry Smith 33971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3398b17ce1afSJed Brown @*/ 3399a4e35b19SJacob Faibussowitsch PetscErrorCode DMCoarsenHookAdd(DM fine, PetscErrorCode (*coarsenhook)(DM fine, DM coarse, void *ctx), PetscErrorCode (*restricthook)(DM fine, Mat mrestrict, Vec rscale, Mat inject, DM coarse, void *ctx), void *ctx) 3400d71ae5a4SJacob Faibussowitsch { 3401b17ce1afSJed Brown DMCoarsenHookLink link, *p; 3402b17ce1afSJed Brown 3403b17ce1afSJed Brown PetscFunctionBegin; 3404b17ce1afSJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 34051e3d8eccSJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 34063ba16761SJacob Faibussowitsch if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 34071e3d8eccSJed Brown } 34089566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 3409b17ce1afSJed Brown link->coarsenhook = coarsenhook; 3410b17ce1afSJed Brown link->restricthook = restricthook; 3411b17ce1afSJed Brown link->ctx = ctx; 34120298fd71SBarry Smith link->next = NULL; 3413b17ce1afSJed Brown *p = link; 34143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3415b17ce1afSJed Brown } 3416b17ce1afSJed Brown 3417dc822a44SJed Brown /*@C 3418bb7acecfSBarry Smith DMCoarsenHookRemove - remove a callback set with `DMCoarsenHookAdd()` 3419dc822a44SJed Brown 342020f4b53cSBarry Smith Logically Collective; No Fortran Support 3421dc822a44SJed Brown 34224165533cSJose E. Roman Input Parameters: 3423bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3424dc822a44SJed Brown . coarsenhook - function to run when setting up a coarser level 3425bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels 342620f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3427dc822a44SJed Brown 3428dc822a44SJed Brown Level: advanced 3429dc822a44SJed Brown 343073ff1848SBarry Smith Notes: 343173ff1848SBarry Smith This function does nothing if the `coarsenhook` is not in the list. 343273ff1848SBarry Smith 343373ff1848SBarry Smith See `DMCoarsenHookAdd()` for the calling sequence of `coarsenhook` and `restricthook` 3434dc822a44SJed Brown 34351cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3436dc822a44SJed Brown @*/ 3437d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookRemove(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx) 3438d71ae5a4SJacob Faibussowitsch { 3439dc822a44SJed Brown DMCoarsenHookLink link, *p; 3440dc822a44SJed Brown 3441dc822a44SJed Brown PetscFunctionBegin; 3442dc822a44SJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 3443dc822a44SJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3444dc822a44SJed Brown if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3445dc822a44SJed Brown link = *p; 3446dc822a44SJed Brown *p = link->next; 34479566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3448dc822a44SJed Brown break; 3449dc822a44SJed Brown } 3450dc822a44SJed Brown } 34513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3452dc822a44SJed Brown } 3453dc822a44SJed Brown 3454b17ce1afSJed Brown /*@ 3455bb7acecfSBarry Smith DMRestrict - restricts user-defined problem data to a coarser `DM` by running hooks registered by `DMCoarsenHookAdd()` 3456b17ce1afSJed Brown 3457b17ce1afSJed Brown Collective if any hooks are 3458b17ce1afSJed Brown 34594165533cSJose E. Roman Input Parameters: 3460bb7acecfSBarry Smith + fine - finer `DM` from which the data is obtained 3461bb7acecfSBarry Smith . restrct - restriction matrix, apply using `MatRestrict()`, usually the transpose of the interpolation 3462e91eccc2SStefano Zampini . rscale - scaling vector for restriction 3463bb7acecfSBarry Smith . inject - injection matrix, also use `MatRestrict()` 346420f4b53cSBarry Smith - coarse - coarser `DM` to update 3465b17ce1afSJed Brown 3466b17ce1afSJed Brown Level: developer 3467b17ce1afSJed Brown 346873ff1848SBarry Smith Developer Note: 3469bb7acecfSBarry Smith Though this routine is called `DMRestrict()` the hooks are added with `DMCoarsenHookAdd()`, a consistent terminology would be better 3470bb7acecfSBarry Smith 34711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMInterpolate()`, `DMRefineHookAdd()` 3472b17ce1afSJed Brown @*/ 3473d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestrict(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse) 3474d71ae5a4SJacob Faibussowitsch { 3475b17ce1afSJed Brown DMCoarsenHookLink link; 3476b17ce1afSJed Brown 3477b17ce1afSJed Brown PetscFunctionBegin; 3478b17ce1afSJed Brown for (link = fine->coarsenhook; link; link = link->next) { 34791baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(fine, restrct, rscale, inject, coarse, link->ctx)); 3480b17ce1afSJed Brown } 34813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 348247c6ae99SBarry Smith } 348347c6ae99SBarry Smith 3484bb9467b5SJed Brown /*@C 348573ff1848SBarry Smith DMSubDomainHookAdd - adds a callback to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()` 34865dbd56e3SPeter Brune 348720f4b53cSBarry Smith Logically Collective; No Fortran Support 34885dbd56e3SPeter Brune 34894165533cSJose E. Roman Input Parameters: 3490bb7acecfSBarry Smith + global - global `DM` 3491bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 34925dbd56e3SPeter Brune . restricthook - function to run to update data on block solve (at the beginning of the block solve) 349320f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 34945dbd56e3SPeter Brune 349520f4b53cSBarry Smith Calling sequence of `ddhook`: 3496bb7acecfSBarry Smith + global - global `DM` 349773ff1848SBarry Smith . block - subdomain `DM` 3498ec4806b8SPeter Brune - ctx - optional user-defined function context 3499ec4806b8SPeter Brune 350020f4b53cSBarry Smith Calling sequence of `restricthook`: 3501bb7acecfSBarry Smith + global - global `DM` 350273ff1848SBarry Smith . out - scatter to the outer (with ghost and overlap points) sub vector 350373ff1848SBarry Smith . in - scatter to sub vector values only owned locally 350473ff1848SBarry Smith . block - subdomain `DM` 35055dbd56e3SPeter Brune - ctx - optional user-defined function context 35065dbd56e3SPeter Brune 35075dbd56e3SPeter Brune Level: advanced 35085dbd56e3SPeter Brune 35095dbd56e3SPeter Brune Notes: 351073ff1848SBarry Smith This function can be used if auxiliary data needs to be set up on subdomain `DM`s. 35115dbd56e3SPeter Brune 35125dbd56e3SPeter Brune If this function is called multiple times, the hooks will be run in the order they are added. 35135dbd56e3SPeter Brune 35145dbd56e3SPeter Brune In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3515bb7acecfSBarry Smith extract the global information from its context (instead of from the `SNES`). 35165dbd56e3SPeter Brune 351773ff1848SBarry Smith Developer Note: 351873ff1848SBarry Smith It is unclear what "block solve" means within the definition of `restricthook` 351973ff1848SBarry Smith 352073ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`, `DMCreateDomainDecomposition()` 35215dbd56e3SPeter Brune @*/ 3522a4e35b19SJacob Faibussowitsch PetscErrorCode DMSubDomainHookAdd(DM global, PetscErrorCode (*ddhook)(DM global, DM block, void *ctx), PetscErrorCode (*restricthook)(DM global, VecScatter out, VecScatter in, DM block, void *ctx), void *ctx) 3523d71ae5a4SJacob Faibussowitsch { 3524be081cd6SPeter Brune DMSubDomainHookLink link, *p; 35255dbd56e3SPeter Brune 35265dbd56e3SPeter Brune PetscFunctionBegin; 35275dbd56e3SPeter Brune PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3528b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 35293ba16761SJacob Faibussowitsch if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 3530b3a6b972SJed Brown } 35319566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 35325dbd56e3SPeter Brune link->restricthook = restricthook; 3533be081cd6SPeter Brune link->ddhook = ddhook; 35345dbd56e3SPeter Brune link->ctx = ctx; 35350298fd71SBarry Smith link->next = NULL; 35365dbd56e3SPeter Brune *p = link; 35373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35385dbd56e3SPeter Brune } 35395dbd56e3SPeter Brune 3540b3a6b972SJed Brown /*@C 354173ff1848SBarry Smith DMSubDomainHookRemove - remove a callback from the list to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()` 3542b3a6b972SJed Brown 354320f4b53cSBarry Smith Logically Collective; No Fortran Support 3544b3a6b972SJed Brown 35454165533cSJose E. Roman Input Parameters: 3546bb7acecfSBarry Smith + global - global `DM` 3547bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 3548b3a6b972SJed Brown . restricthook - function to run to update data on block solve (at the beginning of the block solve) 354920f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3550b3a6b972SJed Brown 3551b3a6b972SJed Brown Level: advanced 3552b3a6b972SJed Brown 355373ff1848SBarry Smith Note: 355473ff1848SBarry Smith See `DMSubDomainHookAdd()` for the calling sequences of `ddhook` and `restricthook` 355573ff1848SBarry Smith 355673ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`, 355773ff1848SBarry Smith `DMCreateDomainDecomposition()` 3558b3a6b972SJed Brown @*/ 3559d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookRemove(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx) 3560d71ae5a4SJacob Faibussowitsch { 3561b3a6b972SJed Brown DMSubDomainHookLink link, *p; 3562b3a6b972SJed Brown 3563b3a6b972SJed Brown PetscFunctionBegin; 3564b3a6b972SJed Brown PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3565b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3566b3a6b972SJed Brown if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3567b3a6b972SJed Brown link = *p; 3568b3a6b972SJed Brown *p = link->next; 35699566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3570b3a6b972SJed Brown break; 3571b3a6b972SJed Brown } 3572b3a6b972SJed Brown } 35733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3574b3a6b972SJed Brown } 3575b3a6b972SJed Brown 35765dbd56e3SPeter Brune /*@ 357773ff1848SBarry Smith DMSubDomainRestrict - restricts user-defined problem data to a subdomain `DM` by running hooks registered by `DMSubDomainHookAdd()` 35785dbd56e3SPeter Brune 35795dbd56e3SPeter Brune Collective if any hooks are 35805dbd56e3SPeter Brune 35814165533cSJose E. Roman Input Parameters: 3582a4e35b19SJacob Faibussowitsch + global - The global `DM` to use as a base 3583a4e35b19SJacob Faibussowitsch . oscatter - The scatter from domain global vector filling subdomain global vector with overlap 3584a4e35b19SJacob Faibussowitsch . gscatter - The scatter from domain global vector filling subdomain local vector with ghosts 3585a4e35b19SJacob Faibussowitsch - subdm - The subdomain `DM` to update 35865dbd56e3SPeter Brune 35875dbd56e3SPeter Brune Level: developer 35885dbd56e3SPeter Brune 358973ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMCreateDomainDecomposition()` 35905dbd56e3SPeter Brune @*/ 3591d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainRestrict(DM global, VecScatter oscatter, VecScatter gscatter, DM subdm) 3592d71ae5a4SJacob Faibussowitsch { 3593be081cd6SPeter Brune DMSubDomainHookLink link; 35945dbd56e3SPeter Brune 35955dbd56e3SPeter Brune PetscFunctionBegin; 3596be081cd6SPeter Brune for (link = global->subdomainhook; link; link = link->next) { 35971baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(global, oscatter, gscatter, subdm, link->ctx)); 35985dbd56e3SPeter Brune } 35993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36005dbd56e3SPeter Brune } 36015dbd56e3SPeter Brune 36025fe1f584SPeter Brune /*@ 3603bb7acecfSBarry Smith DMGetCoarsenLevel - Gets the number of coarsenings that have generated this `DM`. 36045fe1f584SPeter Brune 36055fe1f584SPeter Brune Not Collective 36065fe1f584SPeter Brune 36075fe1f584SPeter Brune Input Parameter: 3608bb7acecfSBarry Smith . dm - the `DM` object 36095fe1f584SPeter Brune 36105fe1f584SPeter Brune Output Parameter: 36116a7d9d85SPeter Brune . level - number of coarsenings 36125fe1f584SPeter Brune 36135fe1f584SPeter Brune Level: developer 36145fe1f584SPeter Brune 36151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMSetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 36165fe1f584SPeter Brune @*/ 3617d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarsenLevel(DM dm, PetscInt *level) 3618d71ae5a4SJacob Faibussowitsch { 36195fe1f584SPeter Brune PetscFunctionBegin; 36205fe1f584SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36214f572ea9SToby Isaac PetscAssertPointer(level, 2); 36225fe1f584SPeter Brune *level = dm->leveldown; 36233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36245fe1f584SPeter Brune } 36255fe1f584SPeter Brune 36269a64c4a8SMatthew G. Knepley /*@ 3627bb7acecfSBarry Smith DMSetCoarsenLevel - Sets the number of coarsenings that have generated this `DM`. 36289a64c4a8SMatthew G. Knepley 362920f4b53cSBarry Smith Collective 36309a64c4a8SMatthew G. Knepley 36319a64c4a8SMatthew G. Knepley Input Parameters: 3632bb7acecfSBarry Smith + dm - the `DM` object 36339a64c4a8SMatthew G. Knepley - level - number of coarsenings 36349a64c4a8SMatthew G. Knepley 36359a64c4a8SMatthew G. Knepley Level: developer 36369a64c4a8SMatthew G. Knepley 3637bb7acecfSBarry Smith Note: 3638bb7acecfSBarry Smith This is rarely used directly, the information is automatically set when a `DM` is created with `DMCoarsen()` 3639bb7acecfSBarry Smith 364042747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 36419a64c4a8SMatthew G. Knepley @*/ 3642d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarsenLevel(DM dm, PetscInt level) 3643d71ae5a4SJacob Faibussowitsch { 36449a64c4a8SMatthew G. Knepley PetscFunctionBegin; 36459a64c4a8SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36469a64c4a8SMatthew G. Knepley dm->leveldown = level; 36473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36489a64c4a8SMatthew G. Knepley } 36499a64c4a8SMatthew G. Knepley 3650cc4c1da9SBarry Smith /*@ 3651bb7acecfSBarry Smith DMRefineHierarchy - Refines a `DM` object, all levels at once 365247c6ae99SBarry Smith 365320f4b53cSBarry Smith Collective 365447c6ae99SBarry Smith 3655d8d19677SJose E. Roman Input Parameters: 3656bb7acecfSBarry Smith + dm - the `DM` object 365747c6ae99SBarry Smith - nlevels - the number of levels of refinement 365847c6ae99SBarry Smith 365947c6ae99SBarry Smith Output Parameter: 3660bb7acecfSBarry Smith . dmf - the refined `DM` hierarchy 366147c6ae99SBarry Smith 366247c6ae99SBarry Smith Level: developer 366347c6ae99SBarry Smith 36641cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMCoarsenHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 366547c6ae99SBarry Smith @*/ 3666d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHierarchy(DM dm, PetscInt nlevels, DM dmf[]) 3667d71ae5a4SJacob Faibussowitsch { 366847c6ae99SBarry Smith PetscFunctionBegin; 3669171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36707a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 36713ba16761SJacob Faibussowitsch if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS); 36724f572ea9SToby Isaac PetscAssertPointer(dmf, 3); 3673213acdd3SPierre Jolivet if (dm->ops->refine && !dm->ops->refinehierarchy) { 367447c6ae99SBarry Smith PetscInt i; 367547c6ae99SBarry Smith 36769566063dSJacob Faibussowitsch PetscCall(DMRefine(dm, PetscObjectComm((PetscObject)dm), &dmf[0])); 367748a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMRefine(dmf[i - 1], PetscObjectComm((PetscObject)dm), &dmf[i])); 3678213acdd3SPierre Jolivet } else PetscUseTypeMethod(dm, refinehierarchy, nlevels, dmf); 36793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 368047c6ae99SBarry Smith } 368147c6ae99SBarry Smith 3682cc4c1da9SBarry Smith /*@ 3683bb7acecfSBarry Smith DMCoarsenHierarchy - Coarsens a `DM` object, all levels at once 368447c6ae99SBarry Smith 368520f4b53cSBarry Smith Collective 368647c6ae99SBarry Smith 3687d8d19677SJose E. Roman Input Parameters: 3688bb7acecfSBarry Smith + dm - the `DM` object 368947c6ae99SBarry Smith - nlevels - the number of levels of coarsening 369047c6ae99SBarry Smith 369147c6ae99SBarry Smith Output Parameter: 3692bb7acecfSBarry Smith . dmc - the coarsened `DM` hierarchy 369347c6ae99SBarry Smith 369447c6ae99SBarry Smith Level: developer 369547c6ae99SBarry Smith 36961cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMRefineHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 369747c6ae99SBarry Smith @*/ 3698d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHierarchy(DM dm, PetscInt nlevels, DM dmc[]) 3699d71ae5a4SJacob Faibussowitsch { 370047c6ae99SBarry Smith PetscFunctionBegin; 3701171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37027a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 37033ba16761SJacob Faibussowitsch if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS); 37044f572ea9SToby Isaac PetscAssertPointer(dmc, 3); 3705213acdd3SPierre Jolivet if (dm->ops->coarsen && !dm->ops->coarsenhierarchy) { 370647c6ae99SBarry Smith PetscInt i; 370747c6ae99SBarry Smith 37089566063dSJacob Faibussowitsch PetscCall(DMCoarsen(dm, PetscObjectComm((PetscObject)dm), &dmc[0])); 370948a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMCoarsen(dmc[i - 1], PetscObjectComm((PetscObject)dm), &dmc[i])); 3710213acdd3SPierre Jolivet } else PetscUseTypeMethod(dm, coarsenhierarchy, nlevels, dmc); 37113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 371247c6ae99SBarry Smith } 371347c6ae99SBarry Smith 37141a266240SBarry Smith /*@C 3715bb7acecfSBarry Smith DMSetApplicationContextDestroy - Sets a user function that will be called to destroy the application context when the `DM` is destroyed 37161a266240SBarry Smith 3717bb7acecfSBarry Smith Logically Collective if the function is collective 37181a266240SBarry Smith 37191a266240SBarry Smith Input Parameters: 3720bb7acecfSBarry Smith + dm - the `DM` object 372149abdd8aSBarry Smith - destroy - the destroy function, see `PetscCtxDestroyFn` for the calling sequence 37221a266240SBarry Smith 37231a266240SBarry Smith Level: intermediate 37241a266240SBarry Smith 372549abdd8aSBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, 372649abdd8aSBarry Smith `DMGetApplicationContext()`, `PetscCtxDestroyFn` 3727f07f9ceaSJed Brown @*/ 372849abdd8aSBarry Smith PetscErrorCode DMSetApplicationContextDestroy(DM dm, PetscCtxDestroyFn *destroy) 3729d71ae5a4SJacob Faibussowitsch { 37301a266240SBarry Smith PetscFunctionBegin; 3731171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37321a266240SBarry Smith dm->ctxdestroy = destroy; 37333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 37341a266240SBarry Smith } 37351a266240SBarry Smith 3736b07ff414SBarry Smith /*@ 3737bb7acecfSBarry Smith DMSetApplicationContext - Set a user context into a `DM` object 373847c6ae99SBarry Smith 373947c6ae99SBarry Smith Not Collective 374047c6ae99SBarry Smith 374147c6ae99SBarry Smith Input Parameters: 3742bb7acecfSBarry Smith + dm - the `DM` object 374347c6ae99SBarry Smith - ctx - the user context 374447c6ae99SBarry Smith 374547c6ae99SBarry Smith Level: intermediate 374647c6ae99SBarry Smith 3747ce78bad3SBarry Smith Note: 374835cb6cd3SPierre Jolivet A user context is a way to pass problem specific information that is accessible whenever the `DM` is available 3749e33b3f0fSStefano Zampini In a multilevel solver, the user context is shared by all the `DM` in the hierarchy; it is thus not advisable 3750e33b3f0fSStefano Zampini to store objects that represent discretized quantities inside the context. 3751bb7acecfSBarry Smith 3752ce78bad3SBarry Smith Fortran Note: 3753ce78bad3SBarry Smith This only works when `ctx` is a Fortran derived type (it cannot be a `PetscObject`), we recommend writing a Fortran interface definition for this 3754ce78bad3SBarry Smith function that tells the Fortran compiler the derived data type that is passed in as the `ctx` argument. See `DMGetApplicationContext()` for 3755ce78bad3SBarry Smith an example. 3756ce78bad3SBarry Smith 375760225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 375847c6ae99SBarry Smith @*/ 3759d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContext(DM dm, void *ctx) 3760d71ae5a4SJacob Faibussowitsch { 376147c6ae99SBarry Smith PetscFunctionBegin; 3762171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 376347c6ae99SBarry Smith dm->ctx = ctx; 37643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 376547c6ae99SBarry Smith } 376647c6ae99SBarry Smith 376747c6ae99SBarry Smith /*@ 3768ce78bad3SBarry Smith DMGetApplicationContext - Gets a user context from a `DM` object provided with `DMSetApplicationContext()` 376947c6ae99SBarry Smith 377047c6ae99SBarry Smith Not Collective 377147c6ae99SBarry Smith 377247c6ae99SBarry Smith Input Parameter: 3773bb7acecfSBarry Smith . dm - the `DM` object 377447c6ae99SBarry Smith 377547c6ae99SBarry Smith Output Parameter: 3776ce78bad3SBarry Smith . ctx - a pointer to the user context 377747c6ae99SBarry Smith 377847c6ae99SBarry Smith Level: intermediate 377947c6ae99SBarry Smith 3780bb7acecfSBarry Smith Note: 378135cb6cd3SPierre Jolivet A user context is a way to pass problem specific information that is accessible whenever the `DM` is available 3782bb7acecfSBarry Smith 3783ce78bad3SBarry Smith Fortran Notes: 3784ce78bad3SBarry Smith This only works when the context is a Fortran derived type (it cannot be a `PetscObject`) and you **must** write a Fortran interface definition for this 3785ce78bad3SBarry Smith function that tells the Fortran compiler the derived data type that is returned as the `ctx` argument. For example, 3786ce78bad3SBarry Smith .vb 3787ce78bad3SBarry Smith Interface DMGetApplicationContext 3788ce78bad3SBarry Smith Subroutine DMGetApplicationContext(dm,ctx,ierr) 3789ce78bad3SBarry Smith #include <petsc/finclude/petscdm.h> 3790ce78bad3SBarry Smith use petscdm 3791ce78bad3SBarry Smith DM dm 3792ce78bad3SBarry Smith type(tUsertype), pointer :: ctx 3793ce78bad3SBarry Smith PetscErrorCode ierr 3794ce78bad3SBarry Smith End Subroutine 3795ce78bad3SBarry Smith End Interface DMGetApplicationContext 3796ce78bad3SBarry Smith .ve 3797ce78bad3SBarry Smith 3798bfe80ac4SPierre Jolivet The prototype for `ctx` must be 3799ce78bad3SBarry Smith .vb 3800ce78bad3SBarry Smith type(tUsertype), pointer :: ctx 3801ce78bad3SBarry Smith .ve 3802ce78bad3SBarry Smith 380342747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 380447c6ae99SBarry Smith @*/ 3805ce78bad3SBarry Smith PetscErrorCode DMGetApplicationContext(DM dm, PeCtx ctx) 3806d71ae5a4SJacob Faibussowitsch { 380747c6ae99SBarry Smith PetscFunctionBegin; 3808171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38091b2093e4SBarry Smith *(void **)ctx = dm->ctx; 38103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 381147c6ae99SBarry Smith } 381247c6ae99SBarry Smith 381308da532bSDmitry Karpeev /*@C 3814bb7acecfSBarry Smith DMSetVariableBounds - sets a function to compute the lower and upper bound vectors for `SNESVI`. 381508da532bSDmitry Karpeev 381620f4b53cSBarry Smith Logically Collective 381708da532bSDmitry Karpeev 3818d8d19677SJose E. Roman Input Parameters: 381908da532bSDmitry Karpeev + dm - the DM object 3820ce78bad3SBarry Smith - f - the function that computes variable bounds used by `SNESVI` (use `NULL` to cancel a previous function that was set) 382108da532bSDmitry Karpeev 382208da532bSDmitry Karpeev Level: intermediate 382308da532bSDmitry Karpeev 3824ce78bad3SBarry Smith Developer Note: 3825ce78bad3SBarry Smith Should be called `DMSetComputeVIBounds()` or something similar 3826ce78bad3SBarry Smith 38271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`, 3828db781477SPatrick Sanan `DMSetJacobian()` 382908da532bSDmitry Karpeev @*/ 3830d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVariableBounds(DM dm, PetscErrorCode (*f)(DM, Vec, Vec)) 3831d71ae5a4SJacob Faibussowitsch { 383208da532bSDmitry Karpeev PetscFunctionBegin; 38335a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 383408da532bSDmitry Karpeev dm->ops->computevariablebounds = f; 38353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 383608da532bSDmitry Karpeev } 383708da532bSDmitry Karpeev 383808da532bSDmitry Karpeev /*@ 3839bb7acecfSBarry Smith DMHasVariableBounds - does the `DM` object have a variable bounds function? 384008da532bSDmitry Karpeev 384108da532bSDmitry Karpeev Not Collective 384208da532bSDmitry Karpeev 384308da532bSDmitry Karpeev Input Parameter: 3844bb7acecfSBarry Smith . dm - the `DM` object to destroy 384508da532bSDmitry Karpeev 384608da532bSDmitry Karpeev Output Parameter: 3847bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the variable bounds function exists 384808da532bSDmitry Karpeev 384908da532bSDmitry Karpeev Level: developer 385008da532bSDmitry Karpeev 38511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 385208da532bSDmitry Karpeev @*/ 3853d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasVariableBounds(DM dm, PetscBool *flg) 3854d71ae5a4SJacob Faibussowitsch { 385508da532bSDmitry Karpeev PetscFunctionBegin; 38565a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38574f572ea9SToby Isaac PetscAssertPointer(flg, 2); 385808da532bSDmitry Karpeev *flg = (dm->ops->computevariablebounds) ? PETSC_TRUE : PETSC_FALSE; 38593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 386008da532bSDmitry Karpeev } 386108da532bSDmitry Karpeev 3862cc4c1da9SBarry Smith /*@ 3863bb7acecfSBarry Smith DMComputeVariableBounds - compute variable bounds used by `SNESVI`. 386408da532bSDmitry Karpeev 386520f4b53cSBarry Smith Logically Collective 386608da532bSDmitry Karpeev 3867f899ff85SJose E. Roman Input Parameter: 3868bb7acecfSBarry Smith . dm - the `DM` object 386908da532bSDmitry Karpeev 387060225df5SJacob Faibussowitsch Output Parameters: 387108da532bSDmitry Karpeev + xl - lower bound 387208da532bSDmitry Karpeev - xu - upper bound 387308da532bSDmitry Karpeev 3874907376e6SBarry Smith Level: advanced 3875907376e6SBarry Smith 387620f4b53cSBarry Smith Note: 387795452b02SPatrick Sanan This is generally not called by users. It calls the function provided by the user with DMSetVariableBounds() 387808da532bSDmitry Karpeev 38791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 388008da532bSDmitry Karpeev @*/ 3881d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeVariableBounds(DM dm, Vec xl, Vec xu) 3882d71ae5a4SJacob Faibussowitsch { 388308da532bSDmitry Karpeev PetscFunctionBegin; 38845a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 388508da532bSDmitry Karpeev PetscValidHeaderSpecific(xl, VEC_CLASSID, 2); 38865a84ad33SLisandro Dalcin PetscValidHeaderSpecific(xu, VEC_CLASSID, 3); 3887dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, computevariablebounds, xl, xu); 38883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 388908da532bSDmitry Karpeev } 389008da532bSDmitry Karpeev 3891b0ae01b7SPeter Brune /*@ 3892bb7acecfSBarry Smith DMHasColoring - does the `DM` object have a method of providing a coloring? 3893b0ae01b7SPeter Brune 3894b0ae01b7SPeter Brune Not Collective 3895b0ae01b7SPeter Brune 3896b0ae01b7SPeter Brune Input Parameter: 3897b0ae01b7SPeter Brune . dm - the DM object 3898b0ae01b7SPeter Brune 3899b0ae01b7SPeter Brune Output Parameter: 3900bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateColoring()`. 3901b0ae01b7SPeter Brune 3902b0ae01b7SPeter Brune Level: developer 3903b0ae01b7SPeter Brune 39041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateColoring()` 3905b0ae01b7SPeter Brune @*/ 3906d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasColoring(DM dm, PetscBool *flg) 3907d71ae5a4SJacob Faibussowitsch { 3908b0ae01b7SPeter Brune PetscFunctionBegin; 39095a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39104f572ea9SToby Isaac PetscAssertPointer(flg, 2); 3911b0ae01b7SPeter Brune *flg = (dm->ops->getcoloring) ? PETSC_TRUE : PETSC_FALSE; 39123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3913b0ae01b7SPeter Brune } 3914b0ae01b7SPeter Brune 39153ad4599aSBarry Smith /*@ 3916bb7acecfSBarry Smith DMHasCreateRestriction - does the `DM` object have a method of providing a restriction? 39173ad4599aSBarry Smith 39183ad4599aSBarry Smith Not Collective 39193ad4599aSBarry Smith 39203ad4599aSBarry Smith Input Parameter: 3921bb7acecfSBarry Smith . dm - the `DM` object 39223ad4599aSBarry Smith 39233ad4599aSBarry Smith Output Parameter: 3924bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateRestriction()`. 39253ad4599aSBarry Smith 39263ad4599aSBarry Smith Level: developer 39273ad4599aSBarry Smith 39281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateRestriction()`, `DMHasCreateInterpolation()`, `DMHasCreateInjection()` 39293ad4599aSBarry Smith @*/ 3930d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateRestriction(DM dm, PetscBool *flg) 3931d71ae5a4SJacob Faibussowitsch { 39323ad4599aSBarry Smith PetscFunctionBegin; 39335a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39344f572ea9SToby Isaac PetscAssertPointer(flg, 2); 39353ad4599aSBarry Smith *flg = (dm->ops->createrestriction) ? PETSC_TRUE : PETSC_FALSE; 39363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 39373ad4599aSBarry Smith } 39383ad4599aSBarry Smith 3939a7058e45SLawrence Mitchell /*@ 3940bb7acecfSBarry Smith DMHasCreateInjection - does the `DM` object have a method of providing an injection? 3941a7058e45SLawrence Mitchell 3942a7058e45SLawrence Mitchell Not Collective 3943a7058e45SLawrence Mitchell 3944a7058e45SLawrence Mitchell Input Parameter: 3945bb7acecfSBarry Smith . dm - the `DM` object 3946a7058e45SLawrence Mitchell 3947a7058e45SLawrence Mitchell Output Parameter: 3948bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateInjection()`. 3949a7058e45SLawrence Mitchell 3950a7058e45SLawrence Mitchell Level: developer 3951a7058e45SLawrence Mitchell 39521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateInjection()`, `DMHasCreateRestriction()`, `DMHasCreateInterpolation()` 3953a7058e45SLawrence Mitchell @*/ 3954d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateInjection(DM dm, PetscBool *flg) 3955d71ae5a4SJacob Faibussowitsch { 3956a7058e45SLawrence Mitchell PetscFunctionBegin; 39575a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39584f572ea9SToby Isaac PetscAssertPointer(flg, 2); 3959dbbe0bcdSBarry Smith if (dm->ops->hascreateinjection) PetscUseTypeMethod(dm, hascreateinjection, flg); 3960ad540459SPierre Jolivet else *flg = (dm->ops->createinjection) ? PETSC_TRUE : PETSC_FALSE; 39613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3962a7058e45SLawrence Mitchell } 3963a7058e45SLawrence Mitchell 39640298fd71SBarry Smith PetscFunctionList DMList = NULL; 3965264ace61SBarry Smith PetscBool DMRegisterAllCalled = PETSC_FALSE; 3966264ace61SBarry Smith 3967cc4c1da9SBarry Smith /*@ 3968bb7acecfSBarry Smith DMSetType - Builds a `DM`, for a particular `DM` implementation. 3969264ace61SBarry Smith 397020f4b53cSBarry Smith Collective 3971264ace61SBarry Smith 3972264ace61SBarry Smith Input Parameters: 3973bb7acecfSBarry Smith + dm - The `DM` object 3974bb7acecfSBarry Smith - method - The name of the `DMType`, for example `DMDA`, `DMPLEX` 3975264ace61SBarry Smith 3976264ace61SBarry Smith Options Database Key: 3977bb7acecfSBarry Smith . -dm_type <type> - Sets the `DM` type; use -help for a list of available types 3978264ace61SBarry Smith 3979264ace61SBarry Smith Level: intermediate 3980264ace61SBarry Smith 3981bb7acecfSBarry Smith Note: 39820462cc06SPierre Jolivet Of the `DM` is constructed by directly calling a function to construct a particular `DM`, for example, `DMDACreate2d()` or `DMPlexCreateBoxMesh()` 3983bb7acecfSBarry Smith 39841cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMGetType()`, `DMCreate()`, `DMDACreate2d()` 3985264ace61SBarry Smith @*/ 3986d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetType(DM dm, DMType method) 3987d71ae5a4SJacob Faibussowitsch { 3988264ace61SBarry Smith PetscErrorCode (*r)(DM); 3989264ace61SBarry Smith PetscBool match; 3990264ace61SBarry Smith 3991264ace61SBarry Smith PetscFunctionBegin; 3992264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39939566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, method, &match)); 39943ba16761SJacob Faibussowitsch if (match) PetscFunctionReturn(PETSC_SUCCESS); 3995264ace61SBarry Smith 39969566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 39979566063dSJacob Faibussowitsch PetscCall(PetscFunctionListFind(DMList, method, &r)); 39987a8be351SBarry Smith PetscCheck(r, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown DM type: %s", method); 3999264ace61SBarry Smith 4000dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, destroy); 40019566063dSJacob Faibussowitsch PetscCall(PetscMemzero(dm->ops, sizeof(*dm->ops))); 40029566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)dm, method)); 40039566063dSJacob Faibussowitsch PetscCall((*r)(dm)); 40043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4005264ace61SBarry Smith } 4006264ace61SBarry Smith 4007cc4c1da9SBarry Smith /*@ 4008bb7acecfSBarry Smith DMGetType - Gets the `DM` type name (as a string) from the `DM`. 4009264ace61SBarry Smith 4010264ace61SBarry Smith Not Collective 4011264ace61SBarry Smith 4012264ace61SBarry Smith Input Parameter: 4013bb7acecfSBarry Smith . dm - The `DM` 4014264ace61SBarry Smith 4015264ace61SBarry Smith Output Parameter: 4016bb7acecfSBarry Smith . type - The `DMType` name 4017264ace61SBarry Smith 4018264ace61SBarry Smith Level: intermediate 4019264ace61SBarry Smith 40201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMSetType()`, `DMCreate()` 4021264ace61SBarry Smith @*/ 4022d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetType(DM dm, DMType *type) 4023d71ae5a4SJacob Faibussowitsch { 4024264ace61SBarry Smith PetscFunctionBegin; 4025264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 40264f572ea9SToby Isaac PetscAssertPointer(type, 2); 40279566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 4028264ace61SBarry Smith *type = ((PetscObject)dm)->type_name; 40293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4030264ace61SBarry Smith } 4031264ace61SBarry Smith 40325d83a8b1SBarry Smith /*@ 4033bb7acecfSBarry Smith DMConvert - Converts a `DM` to another `DM`, either of the same or different type. 403467a56275SMatthew G Knepley 403520f4b53cSBarry Smith Collective 403667a56275SMatthew G Knepley 403767a56275SMatthew G Knepley Input Parameters: 4038bb7acecfSBarry Smith + dm - the `DM` 4039bb7acecfSBarry Smith - newtype - new `DM` type (use "same" for the same type) 404067a56275SMatthew G Knepley 404167a56275SMatthew G Knepley Output Parameter: 4042bb7acecfSBarry Smith . M - pointer to new `DM` 404367a56275SMatthew G Knepley 404420f4b53cSBarry Smith Level: intermediate 404520f4b53cSBarry Smith 404673ff1848SBarry Smith Note: 4047bb7acecfSBarry Smith Cannot be used to convert a sequential `DM` to a parallel or a parallel to sequential, 4048bb7acecfSBarry Smith the MPI communicator of the generated `DM` is always the same as the communicator 4049bb7acecfSBarry Smith of the input `DM`. 405067a56275SMatthew G Knepley 40511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMCreate()`, `DMClone()` 405267a56275SMatthew G Knepley @*/ 4053d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConvert(DM dm, DMType newtype, DM *M) 4054d71ae5a4SJacob Faibussowitsch { 405567a56275SMatthew G Knepley DM B; 405667a56275SMatthew G Knepley char convname[256]; 4057c067b6caSMatthew G. Knepley PetscBool sametype /*, issame */; 405867a56275SMatthew G Knepley 405967a56275SMatthew G Knepley PetscFunctionBegin; 406067a56275SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 406167a56275SMatthew G Knepley PetscValidType(dm, 1); 40624f572ea9SToby Isaac PetscAssertPointer(M, 3); 40639566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, newtype, &sametype)); 40649566063dSJacob Faibussowitsch /* PetscCall(PetscStrcmp(newtype, "same", &issame)); */ 4065c067b6caSMatthew G. Knepley if (sametype) { 4066c067b6caSMatthew G. Knepley *M = dm; 40679566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 40683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4069c067b6caSMatthew G. Knepley } else { 40700298fd71SBarry Smith PetscErrorCode (*conv)(DM, DMType, DM *) = NULL; 407167a56275SMatthew G Knepley 407267a56275SMatthew G Knepley /* 407367a56275SMatthew G Knepley Order of precedence: 407467a56275SMatthew G Knepley 1) See if a specialized converter is known to the current DM. 407567a56275SMatthew G Knepley 2) See if a specialized converter is known to the desired DM class. 407667a56275SMatthew G Knepley 3) See if a good general converter is registered for the desired class 407767a56275SMatthew G Knepley 4) See if a good general converter is known for the current matrix. 407867a56275SMatthew G Knepley 5) Use a really basic converter. 407967a56275SMatthew G Knepley */ 408067a56275SMatthew G Knepley 408167a56275SMatthew G Knepley /* 1) See if a specialized converter is known to the current DM and the desired class */ 40829566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 40839566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 40849566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 40859566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 40869566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 40879566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)dm, convname, &conv)); 408867a56275SMatthew G Knepley if (conv) goto foundconv; 408967a56275SMatthew G Knepley 409067a56275SMatthew G Knepley /* 2) See if a specialized converter is known to the desired DM class. */ 40919566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &B)); 40929566063dSJacob Faibussowitsch PetscCall(DMSetType(B, newtype)); 40939566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 40949566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 40959566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 40969566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 40979566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 40989566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)B, convname, &conv)); 409967a56275SMatthew G Knepley if (conv) { 41009566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 410167a56275SMatthew G Knepley goto foundconv; 410267a56275SMatthew G Knepley } 410367a56275SMatthew G Knepley 410467a56275SMatthew G Knepley #if 0 410567a56275SMatthew G Knepley /* 3) See if a good general converter is registered for the desired class */ 410667a56275SMatthew G Knepley conv = B->ops->convertfrom; 41079566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 410867a56275SMatthew G Knepley if (conv) goto foundconv; 410967a56275SMatthew G Knepley 411067a56275SMatthew G Knepley /* 4) See if a good general converter is known for the current matrix */ 411167a56275SMatthew G Knepley if (dm->ops->convert) { 411267a56275SMatthew G Knepley conv = dm->ops->convert; 411367a56275SMatthew G Knepley } 411467a56275SMatthew G Knepley if (conv) goto foundconv; 411567a56275SMatthew G Knepley #endif 411667a56275SMatthew G Knepley 411767a56275SMatthew G Knepley /* 5) Use a really basic converter. */ 411898921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No conversion possible between DM types %s and %s", ((PetscObject)dm)->type_name, newtype); 411967a56275SMatthew G Knepley 412067a56275SMatthew G Knepley foundconv: 41219566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Convert, dm, 0, 0, 0)); 41229566063dSJacob Faibussowitsch PetscCall((*conv)(dm, newtype, M)); 412312fa691eSMatthew G. Knepley /* Things that are independent of DM type: We should consult DMClone() here */ 412490b157c4SStefano Zampini { 41254fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 41266858538eSMatthew G. Knepley 41274fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 41284fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*M, maxCell, Lstart, L)); 4129c8a6034eSMark (*M)->prealloc_only = dm->prealloc_only; 41309566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->vectype)); 41319566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*M)->vectype)); 41329566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->mattype)); 41339566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*M)->mattype)); 413412fa691eSMatthew G. Knepley } 41359566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Convert, dm, 0, 0, 0)); 413667a56275SMatthew G Knepley } 41379566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)*M)); 41383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 413967a56275SMatthew G Knepley } 4140264ace61SBarry Smith 4141264ace61SBarry Smith /*@C 4142bb7acecfSBarry Smith DMRegister - Adds a new `DM` type implementation 41431c84c290SBarry Smith 4144cc4c1da9SBarry Smith Not Collective, No Fortran Support 41451c84c290SBarry Smith 41461c84c290SBarry Smith Input Parameters: 414720f4b53cSBarry Smith + sname - The name of a new user-defined creation routine 414820f4b53cSBarry Smith - function - The creation routine itself 414920f4b53cSBarry Smith 415020f4b53cSBarry Smith Level: advanced 41511c84c290SBarry Smith 415273ff1848SBarry Smith Note: 415320f4b53cSBarry Smith `DMRegister()` may be called multiple times to add several user-defined `DM`s 41541c84c290SBarry Smith 415560225df5SJacob Faibussowitsch Example Usage: 41561c84c290SBarry Smith .vb 4157bdf89e91SBarry Smith DMRegister("my_da", MyDMCreate); 41581c84c290SBarry Smith .ve 41591c84c290SBarry Smith 416020f4b53cSBarry Smith Then, your `DM` type can be chosen with the procedural interface via 41611c84c290SBarry Smith .vb 41621c84c290SBarry Smith DMCreate(MPI_Comm, DM *); 41631c84c290SBarry Smith DMSetType(DM,"my_da"); 41641c84c290SBarry Smith .ve 41651c84c290SBarry Smith or at runtime via the option 41661c84c290SBarry Smith .vb 41671c84c290SBarry Smith -da_type my_da 41681c84c290SBarry Smith .ve 4169264ace61SBarry Smith 41701cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMSetType()`, `DMRegisterAll()`, `DMRegisterDestroy()` 4171264ace61SBarry Smith @*/ 4172d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRegister(const char sname[], PetscErrorCode (*function)(DM)) 4173d71ae5a4SJacob Faibussowitsch { 4174264ace61SBarry Smith PetscFunctionBegin; 41759566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 41769566063dSJacob Faibussowitsch PetscCall(PetscFunctionListAdd(&DMList, sname, function)); 41773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4178264ace61SBarry Smith } 4179264ace61SBarry Smith 4180ffeef943SBarry Smith /*@ 4181bb7acecfSBarry Smith DMLoad - Loads a DM that has been stored in binary with `DMView()`. 4182b859378eSBarry Smith 418320f4b53cSBarry Smith Collective 4184b859378eSBarry Smith 4185b859378eSBarry Smith Input Parameters: 4186bb7acecfSBarry Smith + newdm - the newly loaded `DM`, this needs to have been created with `DMCreate()` or 4187bb7acecfSBarry Smith some related function before a call to `DMLoad()`. 4188bb7acecfSBarry Smith - viewer - binary file viewer, obtained from `PetscViewerBinaryOpen()` or 4189bb7acecfSBarry Smith `PETSCVIEWERHDF5` file viewer, obtained from `PetscViewerHDF5Open()` 4190b859378eSBarry Smith 4191b859378eSBarry Smith Level: intermediate 4192b859378eSBarry Smith 4193b859378eSBarry Smith Notes: 419455849f57SBarry Smith The type is determined by the data in the file, any type set into the DM before this call is ignored. 4195b859378eSBarry Smith 4196bb7acecfSBarry Smith Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` format, one can save multiple `DMPLEX` 4197bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 4198bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 4199cd7e8a5eSksagiyam 42001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewerBinaryOpen()`, `DMView()`, `MatLoad()`, `VecLoad()` 4201b859378eSBarry Smith @*/ 4202d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLoad(DM newdm, PetscViewer viewer) 4203d71ae5a4SJacob Faibussowitsch { 42049331c7a4SMatthew G. Knepley PetscBool isbinary, ishdf5; 4205b859378eSBarry Smith 4206b859378eSBarry Smith PetscFunctionBegin; 4207b859378eSBarry Smith PetscValidHeaderSpecific(newdm, DM_CLASSID, 1); 4208b859378eSBarry Smith PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 42099566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckReadable(viewer)); 42109566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 42119566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 42129566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Load, viewer, 0, 0, 0)); 42139331c7a4SMatthew G. Knepley if (isbinary) { 42149331c7a4SMatthew G. Knepley PetscInt classid; 42159331c7a4SMatthew G. Knepley char type[256]; 4216b859378eSBarry Smith 42179566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &classid, 1, NULL, PETSC_INT)); 4218835f2295SStefano Zampini PetscCheck(classid == DM_FILE_CLASSID, PetscObjectComm((PetscObject)newdm), PETSC_ERR_ARG_WRONG, "Not DM next in file, classid found %" PetscInt_FMT, classid); 42199566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, type, 256, NULL, PETSC_CHAR)); 42209566063dSJacob Faibussowitsch PetscCall(DMSetType(newdm, type)); 4221dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 42229331c7a4SMatthew G. Knepley } else if (ishdf5) { 4223dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 42249331c7a4SMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerBinaryOpen() or PetscViewerHDF5Open()"); 42259566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Load, viewer, 0, 0, 0)); 42263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4227b859378eSBarry Smith } 4228b859378eSBarry Smith 42294ee01570SBarry Smith /* FEM Support */ 42307da65231SMatthew G Knepley 42312ecf6ec3SMatthew G. Knepley PetscErrorCode DMPrintCellIndices(PetscInt c, const char name[], PetscInt len, const PetscInt x[]) 42322ecf6ec3SMatthew G. Knepley { 42332ecf6ec3SMatthew G. Knepley PetscInt f; 42342ecf6ec3SMatthew G. Knepley 42352ecf6ec3SMatthew G. Knepley PetscFunctionBegin; 42362ecf6ec3SMatthew G. Knepley PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 42372ecf6ec3SMatthew G. Knepley for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %" PetscInt_FMT " |\n", x[f])); 42382ecf6ec3SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 42392ecf6ec3SMatthew G. Knepley } 42402ecf6ec3SMatthew G. Knepley 4241d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellVector(PetscInt c, const char name[], PetscInt len, const PetscScalar x[]) 4242d71ae5a4SJacob Faibussowitsch { 42431d47ebbbSSatish Balay PetscInt f; 42441b30c384SMatthew G Knepley 42457da65231SMatthew G Knepley PetscFunctionBegin; 424663a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 424748a46eb9SPierre Jolivet for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %g |\n", (double)PetscRealPart(x[f]))); 42483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42497da65231SMatthew G Knepley } 42507da65231SMatthew G Knepley 42515962854dSMatthew G. Knepley PetscErrorCode DMPrintCellVectorReal(PetscInt c, const char name[], PetscInt len, const PetscReal x[]) 42525962854dSMatthew G. Knepley { 42535962854dSMatthew G. Knepley PetscInt f; 42545962854dSMatthew G. Knepley 42555962854dSMatthew G. Knepley PetscFunctionBegin; 42565962854dSMatthew G. Knepley PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 42575962854dSMatthew G. Knepley for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %g |\n", (double)x[f])); 42585962854dSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 42595962854dSMatthew G. Knepley } 42605962854dSMatthew G. Knepley 4261d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellMatrix(PetscInt c, const char name[], PetscInt rows, PetscInt cols, const PetscScalar A[]) 4262d71ae5a4SJacob Faibussowitsch { 42631b30c384SMatthew G Knepley PetscInt f, g; 42647da65231SMatthew G Knepley 42657da65231SMatthew G Knepley PetscFunctionBegin; 426663a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 42671d47ebbbSSatish Balay for (f = 0; f < rows; ++f) { 42689566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |")); 426948a46eb9SPierre Jolivet for (g = 0; g < cols; ++g) PetscCall(PetscPrintf(PETSC_COMM_SELF, " % 9.5g", (double)PetscRealPart(A[f * cols + g]))); 42709566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |\n")); 42717da65231SMatthew G Knepley } 42723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42737da65231SMatthew G Knepley } 4274e7c4fc90SDmitry Karpeev 4275d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintLocalVec(DM dm, const char name[], PetscReal tol, Vec X) 4276d71ae5a4SJacob Faibussowitsch { 42770c5b8624SToby Isaac PetscInt localSize, bs; 42780c5b8624SToby Isaac PetscMPIInt size; 42790c5b8624SToby Isaac Vec x, xglob; 42800c5b8624SToby Isaac const PetscScalar *xarray; 4281e759306cSMatthew G. Knepley 4282e759306cSMatthew G. Knepley PetscFunctionBegin; 42839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 42849566063dSJacob Faibussowitsch PetscCall(VecDuplicate(X, &x)); 42859566063dSJacob Faibussowitsch PetscCall(VecCopy(X, x)); 428693ec0da9SPierre Jolivet PetscCall(VecFilter(x, tol)); 42879566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "%s:\n", name)); 42880c5b8624SToby Isaac if (size > 1) { 42899566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(x, &localSize)); 42909566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xarray)); 42919566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize(x, &bs)); 42929566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)dm), bs, localSize, PETSC_DETERMINE, xarray, &xglob)); 42930c5b8624SToby Isaac } else { 42940c5b8624SToby Isaac xglob = x; 42950c5b8624SToby Isaac } 42969566063dSJacob Faibussowitsch PetscCall(VecView(xglob, PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)dm)))); 42970c5b8624SToby Isaac if (size > 1) { 42989566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xglob)); 42999566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xarray)); 43000c5b8624SToby Isaac } 43019566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 43023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4303e759306cSMatthew G. Knepley } 4304e759306cSMatthew G. Knepley 430588ed4aceSMatthew G Knepley /*@ 4306bb7acecfSBarry Smith DMGetLocalSection - Get the `PetscSection` encoding the local data layout for the `DM`. 430788ed4aceSMatthew G Knepley 430888ed4aceSMatthew G Knepley Input Parameter: 4309bb7acecfSBarry Smith . dm - The `DM` 431088ed4aceSMatthew G Knepley 431188ed4aceSMatthew G Knepley Output Parameter: 4312bb7acecfSBarry Smith . section - The `PetscSection` 431388ed4aceSMatthew G Knepley 431420f4b53cSBarry Smith Options Database Key: 4315bb7acecfSBarry Smith . -dm_petscsection_view - View the section created by the `DM` 4316e5893cccSMatthew G. Knepley 431788ed4aceSMatthew G Knepley Level: intermediate 431888ed4aceSMatthew G Knepley 4319bb7acecfSBarry Smith Note: 4320bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 432188ed4aceSMatthew G Knepley 43221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetGlobalSection()` 432388ed4aceSMatthew G Knepley @*/ 4324d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalSection(DM dm, PetscSection *section) 4325d71ae5a4SJacob Faibussowitsch { 432688ed4aceSMatthew G Knepley PetscFunctionBegin; 432788ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 43284f572ea9SToby Isaac PetscAssertPointer(section, 2); 43291bb6d2a8SBarry Smith if (!dm->localSection && dm->ops->createlocalsection) { 4330e5e52638SMatthew G. Knepley PetscInt d; 4331e5e52638SMatthew G. Knepley 433245480ffeSMatthew G. Knepley if (dm->setfromoptionscalled) { 433345480ffeSMatthew G. Knepley PetscObject obj = (PetscObject)dm; 433445480ffeSMatthew G. Knepley PetscViewer viewer; 433545480ffeSMatthew G. Knepley PetscViewerFormat format; 433645480ffeSMatthew G. Knepley PetscBool flg; 433745480ffeSMatthew G. Knepley 4338648c30bcSBarry Smith PetscCall(PetscOptionsCreateViewer(PetscObjectComm(obj), obj->options, obj->prefix, "-dm_petscds_view", &viewer, &format, &flg)); 43399566063dSJacob Faibussowitsch if (flg) PetscCall(PetscViewerPushFormat(viewer, format)); 434045480ffeSMatthew G. Knepley for (d = 0; d < dm->Nds; ++d) { 43419566063dSJacob Faibussowitsch PetscCall(PetscDSSetFromOptions(dm->probs[d].ds)); 43429566063dSJacob Faibussowitsch if (flg) PetscCall(PetscDSView(dm->probs[d].ds, viewer)); 434345480ffeSMatthew G. Knepley } 434445480ffeSMatthew G. Knepley if (flg) { 43459566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 43469566063dSJacob Faibussowitsch PetscCall(PetscViewerPopFormat(viewer)); 4347648c30bcSBarry Smith PetscCall(PetscViewerDestroy(&viewer)); 434845480ffeSMatthew G. Knepley } 434945480ffeSMatthew G. Knepley } 4350dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalsection); 43519566063dSJacob Faibussowitsch if (dm->localSection) PetscCall(PetscObjectViewFromOptions((PetscObject)dm->localSection, NULL, "-dm_petscsection_view")); 43522f0f8703SMatthew G. Knepley } 43531bb6d2a8SBarry Smith *section = dm->localSection; 43543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 435588ed4aceSMatthew G Knepley } 435688ed4aceSMatthew G Knepley 435788ed4aceSMatthew G Knepley /*@ 4358bb7acecfSBarry Smith DMSetLocalSection - Set the `PetscSection` encoding the local data layout for the `DM`. 435988ed4aceSMatthew G Knepley 436088ed4aceSMatthew G Knepley Input Parameters: 4361bb7acecfSBarry Smith + dm - The `DM` 4362bb7acecfSBarry Smith - section - The `PetscSection` 436388ed4aceSMatthew G Knepley 436488ed4aceSMatthew G Knepley Level: intermediate 436588ed4aceSMatthew G Knepley 4366bb7acecfSBarry Smith Note: 4367bb7acecfSBarry Smith Any existing Section will be destroyed 436888ed4aceSMatthew G Knepley 43691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMSetGlobalSection()` 437088ed4aceSMatthew G Knepley @*/ 4371d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLocalSection(DM dm, PetscSection section) 4372d71ae5a4SJacob Faibussowitsch { 4373c473ab19SMatthew G. Knepley PetscInt numFields = 0; 4374af122d2aSMatthew G Knepley PetscInt f; 437588ed4aceSMatthew G Knepley 437688ed4aceSMatthew G Knepley PetscFunctionBegin; 437788ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4378b9d85ea2SLisandro Dalcin if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 43799566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 43809566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->localSection)); 43811bb6d2a8SBarry Smith dm->localSection = section; 43829566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(dm->localSection, &numFields)); 4383af122d2aSMatthew G Knepley if (numFields) { 43849566063dSJacob Faibussowitsch PetscCall(DMSetNumFields(dm, numFields)); 4385af122d2aSMatthew G Knepley for (f = 0; f < numFields; ++f) { 43860f21e855SMatthew G. Knepley PetscObject disc; 4387af122d2aSMatthew G Knepley const char *name; 4388af122d2aSMatthew G Knepley 43899566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(dm->localSection, f, &name)); 43909566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &disc)); 43919566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName(disc, name)); 4392af122d2aSMatthew G Knepley } 4393af122d2aSMatthew G Knepley } 439450350c8eSStefano Zampini /* The global section and the SectionSF will be rebuilt 439550350c8eSStefano Zampini in the next call to DMGetGlobalSection() and DMGetSectionSF(). */ 43969566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 439750350c8eSStefano Zampini PetscCall(PetscSFDestroy(&dm->sectionSF)); 439852947b74SStefano Zampini PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 439950350c8eSStefano Zampini 440050350c8eSStefano Zampini /* Clear scratch vectors */ 440150350c8eSStefano Zampini PetscCall(DMClearGlobalVectors(dm)); 440250350c8eSStefano Zampini PetscCall(DMClearLocalVectors(dm)); 440350350c8eSStefano Zampini PetscCall(DMClearNamedGlobalVectors(dm)); 440450350c8eSStefano Zampini PetscCall(DMClearNamedLocalVectors(dm)); 44053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 440688ed4aceSMatthew G Knepley } 440788ed4aceSMatthew G Knepley 4408adc21957SMatthew G. Knepley /*@C 4409d8b4a066SPierre Jolivet DMCreateSectionPermutation - Create a permutation of the `PetscSection` chart and optionally a block structure. 4410adc21957SMatthew G. Knepley 4411adc21957SMatthew G. Knepley Input Parameter: 4412adc21957SMatthew G. Knepley . dm - The `DM` 4413adc21957SMatthew G. Knepley 44149cde84edSJose E. Roman Output Parameters: 4415adc21957SMatthew G. Knepley + perm - A permutation of the mesh points in the chart 4416b6971eaeSBarry Smith - blockStarts - A high bit is set for the point that begins every block, or `NULL` for default blocking 4417adc21957SMatthew G. Knepley 4418adc21957SMatthew G. Knepley Level: developer 4419adc21957SMatthew G. Knepley 4420adc21957SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMGetGlobalSection()` 4421adc21957SMatthew G. Knepley @*/ 4422adc21957SMatthew G. Knepley PetscErrorCode DMCreateSectionPermutation(DM dm, IS *perm, PetscBT *blockStarts) 4423adc21957SMatthew G. Knepley { 4424adc21957SMatthew G. Knepley PetscFunctionBegin; 4425adc21957SMatthew G. Knepley *perm = NULL; 4426adc21957SMatthew G. Knepley *blockStarts = NULL; 4427adc21957SMatthew G. Knepley PetscTryTypeMethod(dm, createsectionpermutation, perm, blockStarts); 4428adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 4429adc21957SMatthew G. Knepley } 4430adc21957SMatthew G. Knepley 44319435951eSToby Isaac /*@ 4432bb7acecfSBarry Smith DMGetDefaultConstraints - Get the `PetscSection` and `Mat` that specify the local constraint interpolation. See `DMSetDefaultConstraints()` for a description of the purpose of constraint interpolation. 44339435951eSToby Isaac 443420f4b53cSBarry Smith not Collective 4435e228b242SToby Isaac 44369435951eSToby Isaac Input Parameter: 4437bb7acecfSBarry Smith . dm - The `DM` 44389435951eSToby Isaac 4439d8d19677SJose E. Roman Output Parameters: 444020f4b53cSBarry Smith + section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Returns `NULL` if there are no local constraints. 444120f4b53cSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section. Returns `NULL` if there are no local constraints. 444279769bd5SJed Brown - bias - Vector containing bias to be added to constrained dofs 44439435951eSToby Isaac 44449435951eSToby Isaac Level: advanced 44459435951eSToby Isaac 4446bb7acecfSBarry Smith Note: 4447bb7acecfSBarry Smith This gets borrowed references, so the user should not destroy the `PetscSection`, `Mat`, or `Vec`. 44489435951eSToby Isaac 44491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDefaultConstraints()` 44509435951eSToby Isaac @*/ 4451d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDefaultConstraints(DM dm, PetscSection *section, Mat *mat, Vec *bias) 4452d71ae5a4SJacob Faibussowitsch { 44539435951eSToby Isaac PetscFunctionBegin; 44549435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4455dbbe0bcdSBarry Smith if (!dm->defaultConstraint.section && !dm->defaultConstraint.mat && dm->ops->createdefaultconstraints) PetscUseTypeMethod(dm, createdefaultconstraints); 44563b8ba7d1SJed Brown if (section) *section = dm->defaultConstraint.section; 44573b8ba7d1SJed Brown if (mat) *mat = dm->defaultConstraint.mat; 445879769bd5SJed Brown if (bias) *bias = dm->defaultConstraint.bias; 44593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44609435951eSToby Isaac } 44619435951eSToby Isaac 44629435951eSToby Isaac /*@ 4463bb7acecfSBarry Smith DMSetDefaultConstraints - Set the `PetscSection` and `Mat` that specify the local constraint interpolation. 44649435951eSToby Isaac 446520f4b53cSBarry Smith Collective 4466e228b242SToby Isaac 44679435951eSToby Isaac Input Parameters: 4468bb7acecfSBarry Smith + dm - The `DM` 4469bb7acecfSBarry Smith . section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 447020f4b53cSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section: `NULL` indicates no constraints. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 447120f4b53cSBarry Smith - bias - A bias vector to be added to constrained values in the local vector. `NULL` indicates no bias. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 44729435951eSToby Isaac 44739435951eSToby Isaac Level: advanced 44749435951eSToby Isaac 447520f4b53cSBarry Smith Notes: 447620f4b53cSBarry Smith If a constraint matrix is specified, then it is applied during `DMGlobalToLocalEnd()` when mode is `INSERT_VALUES`, `INSERT_BC_VALUES`, or `INSERT_ALL_VALUES`. Without a constraint matrix, the local vector l returned by `DMGlobalToLocalEnd()` contains values that have been scattered from a global vector without modification; with a constraint matrix A, l is modified by computing c = A * l + bias, l[s[i]] = c[i], where the scatter s is defined by the `PetscSection` returned by `DMGetDefaultConstraints()`. 447720f4b53cSBarry Smith 447820f4b53cSBarry Smith If a constraint matrix is specified, then its adjoint is applied during `DMLocalToGlobalBegin()` when mode is `ADD_VALUES`, `ADD_BC_VALUES`, or `ADD_ALL_VALUES`. Without a constraint matrix, the local vector l is accumulated into a global vector without modification; with a constraint matrix A, l is first modified by computing c[i] = l[s[i]], l[s[i]] = 0, l = l + A'*c, which is the adjoint of the operation described above. Any bias, if specified, is ignored when accumulating. 447920f4b53cSBarry Smith 4480bb7acecfSBarry Smith This increments the references of the `PetscSection`, `Mat`, and `Vec`, so they user can destroy them. 44819435951eSToby Isaac 44821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDefaultConstraints()` 44839435951eSToby Isaac @*/ 4484d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDefaultConstraints(DM dm, PetscSection section, Mat mat, Vec bias) 4485d71ae5a4SJacob Faibussowitsch { 4486e228b242SToby Isaac PetscMPIInt result; 44879435951eSToby Isaac 44889435951eSToby Isaac PetscFunctionBegin; 44899435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4490e228b242SToby Isaac if (section) { 4491e228b242SToby Isaac PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 44929566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)section), &result)); 44937a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint section must have local communicator"); 4494e228b242SToby Isaac } 4495e228b242SToby Isaac if (mat) { 4496e228b242SToby Isaac PetscValidHeaderSpecific(mat, MAT_CLASSID, 3); 44979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)mat), &result)); 44987a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint matrix must have local communicator"); 4499e228b242SToby Isaac } 450079769bd5SJed Brown if (bias) { 450179769bd5SJed Brown PetscValidHeaderSpecific(bias, VEC_CLASSID, 4); 45029566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)bias), &result)); 450379769bd5SJed Brown PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint bias must have local communicator"); 450479769bd5SJed Brown } 45059566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 45069566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->defaultConstraint.section)); 45073b8ba7d1SJed Brown dm->defaultConstraint.section = section; 45089566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mat)); 45099566063dSJacob Faibussowitsch PetscCall(MatDestroy(&dm->defaultConstraint.mat)); 45103b8ba7d1SJed Brown dm->defaultConstraint.mat = mat; 45119566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)bias)); 45129566063dSJacob Faibussowitsch PetscCall(VecDestroy(&dm->defaultConstraint.bias)); 451379769bd5SJed Brown dm->defaultConstraint.bias = bias; 45143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 45159435951eSToby Isaac } 45169435951eSToby Isaac 4517497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 4518507e4973SMatthew G. Knepley /* 4519bb7acecfSBarry Smith DMDefaultSectionCheckConsistency - Check the consistentcy of the global and local sections. Generates and error if they are not consistent. 4520507e4973SMatthew G. Knepley 4521507e4973SMatthew G. Knepley Input Parameters: 4522bb7acecfSBarry Smith + dm - The `DM` 4523bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4524bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 4525507e4973SMatthew G. Knepley 4526507e4973SMatthew G. Knepley Level: intermediate 4527507e4973SMatthew G. Knepley 45281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()` 4529507e4973SMatthew G. Knepley */ 4530d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(DM dm, PetscSection localSection, PetscSection globalSection) 4531d71ae5a4SJacob Faibussowitsch { 4532507e4973SMatthew G. Knepley MPI_Comm comm; 4533507e4973SMatthew G. Knepley PetscLayout layout; 4534507e4973SMatthew G. Knepley const PetscInt *ranges; 4535507e4973SMatthew G. Knepley PetscInt pStart, pEnd, p, nroots; 4536507e4973SMatthew G. Knepley PetscMPIInt size, rank; 4537507e4973SMatthew G. Knepley PetscBool valid = PETSC_TRUE, gvalid; 4538507e4973SMatthew G. Knepley 4539507e4973SMatthew G. Knepley PetscFunctionBegin; 45409566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 4541507e4973SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45429566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 45439566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 45449566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(globalSection, &pStart, &pEnd)); 45459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &nroots)); 45469566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &layout)); 45479566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(layout, 1)); 45489566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(layout, nroots)); 45499566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(layout)); 45509566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(layout, &ranges)); 4551507e4973SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 4552f741bcd2SMatthew G. Knepley PetscInt dof, cdof, off, gdof, gcdof, goff, gsize, d; 4553507e4973SMatthew G. Knepley 45549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(localSection, p, &dof)); 45559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(localSection, p, &off)); 45569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(localSection, p, &cdof)); 45579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(globalSection, p, &gdof)); 45589566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(globalSection, p, &gcdof)); 45599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalSection, p, &goff)); 4560507e4973SMatthew G. Knepley if (!gdof) continue; /* Censored point */ 45619371c9d4SSatish Balay if ((gdof < 0 ? -(gdof + 1) : gdof) != dof) { 45629371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local dof %" PetscInt_FMT "\n", rank, gdof, p, dof)); 45639371c9d4SSatish Balay valid = PETSC_FALSE; 45649371c9d4SSatish Balay } 45659371c9d4SSatish Balay if (gcdof && (gcdof != cdof)) { 45669371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global constraints %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local constraints %" PetscInt_FMT "\n", rank, gcdof, p, cdof)); 45679371c9d4SSatish Balay valid = PETSC_FALSE; 45689371c9d4SSatish Balay } 4569507e4973SMatthew G. Knepley if (gdof < 0) { 4570507e4973SMatthew G. Knepley gsize = gdof < 0 ? -(gdof + 1) - gcdof : gdof - gcdof; 4571507e4973SMatthew G. Knepley for (d = 0; d < gsize; ++d) { 4572507e4973SMatthew G. Knepley PetscInt offset = -(goff + 1) + d, r; 4573507e4973SMatthew G. Knepley 45749566063dSJacob Faibussowitsch PetscCall(PetscFindInt(offset, size + 1, ranges, &r)); 4575507e4973SMatthew G. Knepley if (r < 0) r = -(r + 2); 45769371c9d4SSatish Balay if ((r < 0) || (r >= size)) { 45779371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Point %" PetscInt_FMT " mapped to invalid process %" PetscInt_FMT " (%" PetscInt_FMT ", %" PetscInt_FMT ")\n", rank, p, r, gdof, goff)); 45789371c9d4SSatish Balay valid = PETSC_FALSE; 45799371c9d4SSatish Balay break; 45809371c9d4SSatish Balay } 4581507e4973SMatthew G. Knepley } 4582507e4973SMatthew G. Knepley } 4583507e4973SMatthew G. Knepley } 45849566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&layout)); 45859566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, NULL)); 4586462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&valid, &gvalid, 1, MPIU_BOOL, MPI_LAND, comm)); 4587507e4973SMatthew G. Knepley if (!gvalid) { 45889566063dSJacob Faibussowitsch PetscCall(DMView(dm, NULL)); 4589507e4973SMatthew G. Knepley SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Inconsistent local and global sections"); 4590507e4973SMatthew G. Knepley } 45913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4592507e4973SMatthew G. Knepley } 4593f741bcd2SMatthew G. Knepley #endif 4594507e4973SMatthew G. Knepley 459590df3356SJames Wright PetscErrorCode DMGetIsoperiodicPointSF_Internal(DM dm, PetscSF *sf) 45966725e60dSJed Brown { 45976725e60dSJed Brown PetscErrorCode (*f)(DM, PetscSF *); 45984d86920dSPierre Jolivet 45996725e60dSJed Brown PetscFunctionBegin; 46006725e60dSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46014f572ea9SToby Isaac PetscAssertPointer(sf, 2); 46025f06a3ddSJed Brown PetscCall(PetscObjectQueryFunction((PetscObject)dm, "DMGetIsoperiodicPointSF_C", &f)); 46036725e60dSJed Brown if (f) PetscCall(f(dm, sf)); 46046725e60dSJed Brown else *sf = dm->sf; 46053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 46066725e60dSJed Brown } 46076725e60dSJed Brown 460888ed4aceSMatthew G Knepley /*@ 4609bb7acecfSBarry Smith DMGetGlobalSection - Get the `PetscSection` encoding the global data layout for the `DM`. 461088ed4aceSMatthew G Knepley 461120f4b53cSBarry Smith Collective 46128b1ab98fSJed Brown 461388ed4aceSMatthew G Knepley Input Parameter: 4614bb7acecfSBarry Smith . dm - The `DM` 461588ed4aceSMatthew G Knepley 461688ed4aceSMatthew G Knepley Output Parameter: 4617bb7acecfSBarry Smith . section - The `PetscSection` 461888ed4aceSMatthew G Knepley 461988ed4aceSMatthew G Knepley Level: intermediate 462088ed4aceSMatthew G Knepley 4621bb7acecfSBarry Smith Note: 4622bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 462388ed4aceSMatthew G Knepley 46241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()` 462588ed4aceSMatthew G Knepley @*/ 4626d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetGlobalSection(DM dm, PetscSection *section) 4627d71ae5a4SJacob Faibussowitsch { 462888ed4aceSMatthew G Knepley PetscFunctionBegin; 462988ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46304f572ea9SToby Isaac PetscAssertPointer(section, 2); 46311bb6d2a8SBarry Smith if (!dm->globalSection) { 4632fd59a867SMatthew G. Knepley PetscSection s; 46336725e60dSJed Brown PetscSF sf; 4634fd59a867SMatthew G. Knepley 46359566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 46367a8be351SBarry Smith PetscCheck(s, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a default PetscSection in order to create a global PetscSection"); 46377a8be351SBarry Smith PetscCheck(dm->sf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a point PetscSF in order to create a global PetscSection"); 46385f06a3ddSJed Brown PetscCall(DMGetIsoperiodicPointSF_Internal(dm, &sf)); 4639eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionCreateGlobalSection(s, sf, PETSC_TRUE, PETSC_FALSE, PETSC_FALSE, &dm->globalSection)); 46409566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&dm->map)); 46419566063dSJacob Faibussowitsch PetscCall(PetscSectionGetValueLayout(PetscObjectComm((PetscObject)dm), dm->globalSection, &dm->map)); 46429566063dSJacob Faibussowitsch PetscCall(PetscSectionViewFromOptions(dm->globalSection, NULL, "-global_section_view")); 464388ed4aceSMatthew G Knepley } 46441bb6d2a8SBarry Smith *section = dm->globalSection; 46453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 464688ed4aceSMatthew G Knepley } 464788ed4aceSMatthew G Knepley 4648b21d0597SMatthew G Knepley /*@ 4649bb7acecfSBarry Smith DMSetGlobalSection - Set the `PetscSection` encoding the global data layout for the `DM`. 4650b21d0597SMatthew G Knepley 4651b21d0597SMatthew G Knepley Input Parameters: 4652bb7acecfSBarry Smith + dm - The `DM` 46532fe279fdSBarry Smith - section - The PetscSection, or `NULL` 4654b21d0597SMatthew G Knepley 4655b21d0597SMatthew G Knepley Level: intermediate 4656b21d0597SMatthew G Knepley 4657bb7acecfSBarry Smith Note: 4658bb7acecfSBarry Smith Any existing `PetscSection` will be destroyed 4659b21d0597SMatthew G Knepley 46601cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetGlobalSection()`, `DMSetLocalSection()` 4661b21d0597SMatthew G Knepley @*/ 4662d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetGlobalSection(DM dm, PetscSection section) 4663d71ae5a4SJacob Faibussowitsch { 4664b21d0597SMatthew G Knepley PetscFunctionBegin; 4665b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46665080bbdbSMatthew G Knepley if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 46679566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 46689566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 46691bb6d2a8SBarry Smith dm->globalSection = section; 4670497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 46719566063dSJacob Faibussowitsch if (section) PetscCall(DMDefaultSectionCheckConsistency_Internal(dm, dm->localSection, section)); 4672507e4973SMatthew G. Knepley #endif 467350350c8eSStefano Zampini /* Clear global scratch vectors and sectionSF */ 467450350c8eSStefano Zampini PetscCall(PetscSFDestroy(&dm->sectionSF)); 467552947b74SStefano Zampini PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 467650350c8eSStefano Zampini PetscCall(DMClearGlobalVectors(dm)); 467750350c8eSStefano Zampini PetscCall(DMClearNamedGlobalVectors(dm)); 46783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4679b21d0597SMatthew G Knepley } 4680b21d0597SMatthew G Knepley 468188ed4aceSMatthew G Knepley /*@ 4682bb7acecfSBarry Smith DMGetSectionSF - Get the `PetscSF` encoding the parallel dof overlap for the `DM`. If it has not been set, 4683bb7acecfSBarry Smith it is created from the default `PetscSection` layouts in the `DM`. 468488ed4aceSMatthew G Knepley 468588ed4aceSMatthew G Knepley Input Parameter: 4686bb7acecfSBarry Smith . dm - The `DM` 468788ed4aceSMatthew G Knepley 468888ed4aceSMatthew G Knepley Output Parameter: 4689bb7acecfSBarry Smith . sf - The `PetscSF` 469088ed4aceSMatthew G Knepley 469188ed4aceSMatthew G Knepley Level: intermediate 469288ed4aceSMatthew G Knepley 4693bb7acecfSBarry Smith Note: 4694bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 469588ed4aceSMatthew G Knepley 46961cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetSectionSF()`, `DMCreateSectionSF()` 469788ed4aceSMatthew G Knepley @*/ 4698d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSectionSF(DM dm, PetscSF *sf) 4699d71ae5a4SJacob Faibussowitsch { 470088ed4aceSMatthew G Knepley PetscInt nroots; 470188ed4aceSMatthew G Knepley 470288ed4aceSMatthew G Knepley PetscFunctionBegin; 470388ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47044f572ea9SToby Isaac PetscAssertPointer(sf, 2); 470548a46eb9SPierre Jolivet if (!dm->sectionSF) PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 47069566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sectionSF, &nroots, NULL, NULL, NULL)); 470788ed4aceSMatthew G Knepley if (nroots < 0) { 470888ed4aceSMatthew G Knepley PetscSection section, gSection; 470988ed4aceSMatthew G Knepley 47109566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 471131ea6d37SMatthew G Knepley if (section) { 47129566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gSection)); 47139566063dSJacob Faibussowitsch PetscCall(DMCreateSectionSF(dm, section, gSection)); 471431ea6d37SMatthew G Knepley } else { 47150298fd71SBarry Smith *sf = NULL; 47163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 471731ea6d37SMatthew G Knepley } 471888ed4aceSMatthew G Knepley } 47191bb6d2a8SBarry Smith *sf = dm->sectionSF; 47203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 472188ed4aceSMatthew G Knepley } 472288ed4aceSMatthew G Knepley 472388ed4aceSMatthew G Knepley /*@ 4724bb7acecfSBarry Smith DMSetSectionSF - Set the `PetscSF` encoding the parallel dof overlap for the `DM` 472588ed4aceSMatthew G Knepley 472688ed4aceSMatthew G Knepley Input Parameters: 4727bb7acecfSBarry Smith + dm - The `DM` 4728bb7acecfSBarry Smith - sf - The `PetscSF` 472988ed4aceSMatthew G Knepley 473088ed4aceSMatthew G Knepley Level: intermediate 473188ed4aceSMatthew G Knepley 4732bb7acecfSBarry Smith Note: 4733bb7acecfSBarry Smith Any previous `PetscSF` is destroyed 473488ed4aceSMatthew G Knepley 47351cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMCreateSectionSF()` 473688ed4aceSMatthew G Knepley @*/ 4737d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSectionSF(DM dm, PetscSF sf) 4738d71ae5a4SJacob Faibussowitsch { 473988ed4aceSMatthew G Knepley PetscFunctionBegin; 474088ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4741b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 47429566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 47439566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sectionSF)); 47441bb6d2a8SBarry Smith dm->sectionSF = sf; 47453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 474688ed4aceSMatthew G Knepley } 474788ed4aceSMatthew G Knepley 4748cc4c1da9SBarry Smith /*@ 4749bb7acecfSBarry Smith DMCreateSectionSF - Create the `PetscSF` encoding the parallel dof overlap for the `DM` based upon the `PetscSection`s 475088ed4aceSMatthew G Knepley describing the data layout. 475188ed4aceSMatthew G Knepley 475288ed4aceSMatthew G Knepley Input Parameters: 4753bb7acecfSBarry Smith + dm - The `DM` 4754bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4755bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 475688ed4aceSMatthew G Knepley 47571bb6d2a8SBarry Smith Level: developer 47581bb6d2a8SBarry Smith 4759bb7acecfSBarry Smith Note: 4760bb7acecfSBarry Smith One usually uses `DMGetSectionSF()` to obtain the `PetscSF` 4761bb7acecfSBarry Smith 476273ff1848SBarry Smith Developer Note: 4763bb7acecfSBarry Smith Since this routine has for arguments the two sections from the `DM` and puts the resulting `PetscSF` 4764bb7acecfSBarry Smith directly into the `DM`, perhaps this function should not take the local and global sections as 4765b6971eaeSBarry Smith input and should just obtain them from the `DM`? Plus PETSc creation functions return the thing 4766b6971eaeSBarry Smith they create, this returns nothing 47671bb6d2a8SBarry Smith 47681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMGetLocalSection()`, `DMGetGlobalSection()` 476988ed4aceSMatthew G Knepley @*/ 4770d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSectionSF(DM dm, PetscSection localSection, PetscSection globalSection) 4771d71ae5a4SJacob Faibussowitsch { 477288ed4aceSMatthew G Knepley PetscFunctionBegin; 477388ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47749566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphSection(dm->sectionSF, localSection, globalSection)); 47753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 477688ed4aceSMatthew G Knepley } 4777af122d2aSMatthew G Knepley 4778b21d0597SMatthew G Knepley /*@ 4779bb7acecfSBarry Smith DMGetPointSF - Get the `PetscSF` encoding the parallel section point overlap for the `DM`. 4780bb7acecfSBarry Smith 4781bb7acecfSBarry Smith Not collective but the resulting `PetscSF` is collective 4782b21d0597SMatthew G Knepley 4783b21d0597SMatthew G Knepley Input Parameter: 4784bb7acecfSBarry Smith . dm - The `DM` 4785b21d0597SMatthew G Knepley 4786b21d0597SMatthew G Knepley Output Parameter: 4787bb7acecfSBarry Smith . sf - The `PetscSF` 4788b21d0597SMatthew G Knepley 4789b21d0597SMatthew G Knepley Level: intermediate 4790b21d0597SMatthew G Knepley 4791bb7acecfSBarry Smith Note: 4792bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 4793b21d0597SMatthew G Knepley 47941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4795b21d0597SMatthew G Knepley @*/ 4796d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetPointSF(DM dm, PetscSF *sf) 4797d71ae5a4SJacob Faibussowitsch { 4798b21d0597SMatthew G Knepley PetscFunctionBegin; 4799b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48004f572ea9SToby Isaac PetscAssertPointer(sf, 2); 4801b21d0597SMatthew G Knepley *sf = dm->sf; 48023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4803b21d0597SMatthew G Knepley } 4804b21d0597SMatthew G Knepley 4805057b4bcdSMatthew G Knepley /*@ 4806bb7acecfSBarry Smith DMSetPointSF - Set the `PetscSF` encoding the parallel section point overlap for the `DM`. 4807bb7acecfSBarry Smith 480820f4b53cSBarry Smith Collective 4809057b4bcdSMatthew G Knepley 4810057b4bcdSMatthew G Knepley Input Parameters: 4811bb7acecfSBarry Smith + dm - The `DM` 4812bb7acecfSBarry Smith - sf - The `PetscSF` 4813057b4bcdSMatthew G Knepley 4814057b4bcdSMatthew G Knepley Level: intermediate 4815057b4bcdSMatthew G Knepley 48161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4817057b4bcdSMatthew G Knepley @*/ 4818d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetPointSF(DM dm, PetscSF sf) 4819d71ae5a4SJacob Faibussowitsch { 4820057b4bcdSMatthew G Knepley PetscFunctionBegin; 4821057b4bcdSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4822b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 48239566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 48249566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sf)); 4825057b4bcdSMatthew G Knepley dm->sf = sf; 48263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4827057b4bcdSMatthew G Knepley } 4828057b4bcdSMatthew G Knepley 48294f37162bSMatthew G. Knepley /*@ 4830bb7acecfSBarry Smith DMGetNaturalSF - Get the `PetscSF` encoding the map back to the original mesh ordering 48314f37162bSMatthew G. Knepley 48324f37162bSMatthew G. Knepley Input Parameter: 4833bb7acecfSBarry Smith . dm - The `DM` 48344f37162bSMatthew G. Knepley 48354f37162bSMatthew G. Knepley Output Parameter: 4836bb7acecfSBarry Smith . sf - The `PetscSF` 48374f37162bSMatthew G. Knepley 48384f37162bSMatthew G. Knepley Level: intermediate 48394f37162bSMatthew G. Knepley 4840bb7acecfSBarry Smith Note: 4841bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 48424f37162bSMatthew G. Knepley 48431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 48444f37162bSMatthew G. Knepley @*/ 4845d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNaturalSF(DM dm, PetscSF *sf) 4846d71ae5a4SJacob Faibussowitsch { 48474f37162bSMatthew G. Knepley PetscFunctionBegin; 48484f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48494f572ea9SToby Isaac PetscAssertPointer(sf, 2); 48504f37162bSMatthew G. Knepley *sf = dm->sfNatural; 48513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48524f37162bSMatthew G. Knepley } 48534f37162bSMatthew G. Knepley 48544f37162bSMatthew G. Knepley /*@ 48554f37162bSMatthew G. Knepley DMSetNaturalSF - Set the PetscSF encoding the map back to the original mesh ordering 48564f37162bSMatthew G. Knepley 48574f37162bSMatthew G. Knepley Input Parameters: 48584f37162bSMatthew G. Knepley + dm - The DM 48594f37162bSMatthew G. Knepley - sf - The PetscSF 48604f37162bSMatthew G. Knepley 48614f37162bSMatthew G. Knepley Level: intermediate 48624f37162bSMatthew G. Knepley 48631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 48644f37162bSMatthew G. Knepley @*/ 4865d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNaturalSF(DM dm, PetscSF sf) 4866d71ae5a4SJacob Faibussowitsch { 48674f37162bSMatthew G. Knepley PetscFunctionBegin; 48684f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48694f37162bSMatthew G. Knepley if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 48709566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 48719566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sfNatural)); 48724f37162bSMatthew G. Knepley dm->sfNatural = sf; 48733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48744f37162bSMatthew G. Knepley } 48754f37162bSMatthew G. Knepley 4876d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetDefaultAdjacency_Private(DM dm, PetscInt f, PetscObject disc) 4877d71ae5a4SJacob Faibussowitsch { 487834aa8a36SMatthew G. Knepley PetscClassId id; 487934aa8a36SMatthew G. Knepley 488034aa8a36SMatthew G. Knepley PetscFunctionBegin; 48819566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 488234aa8a36SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 48839566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 488434aa8a36SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 48859566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_TRUE, PETSC_FALSE)); 488617c1d62eSMatthew G. Knepley } else { 48879566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 488834aa8a36SMatthew G. Knepley } 48893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 489034aa8a36SMatthew G. Knepley } 489134aa8a36SMatthew G. Knepley 4892d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFieldEnlarge_Static(DM dm, PetscInt NfNew) 4893d71ae5a4SJacob Faibussowitsch { 489444a7f3ddSMatthew G. Knepley RegionField *tmpr; 489544a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf, f; 489644a7f3ddSMatthew G. Knepley 489744a7f3ddSMatthew G. Knepley PetscFunctionBegin; 48983ba16761SJacob Faibussowitsch if (Nf >= NfNew) PetscFunctionReturn(PETSC_SUCCESS); 48999566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NfNew, &tmpr)); 490044a7f3ddSMatthew G. Knepley for (f = 0; f < Nf; ++f) tmpr[f] = dm->fields[f]; 49019371c9d4SSatish Balay for (f = Nf; f < NfNew; ++f) { 49029371c9d4SSatish Balay tmpr[f].disc = NULL; 49039371c9d4SSatish Balay tmpr[f].label = NULL; 49049371c9d4SSatish Balay tmpr[f].avoidTensor = PETSC_FALSE; 49059371c9d4SSatish Balay } 49069566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 490744a7f3ddSMatthew G. Knepley dm->Nf = NfNew; 490844a7f3ddSMatthew G. Knepley dm->fields = tmpr; 49093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 491044a7f3ddSMatthew G. Knepley } 491144a7f3ddSMatthew G. Knepley 491244a7f3ddSMatthew G. Knepley /*@ 491320f4b53cSBarry Smith DMClearFields - Remove all fields from the `DM` 491444a7f3ddSMatthew G. Knepley 491520f4b53cSBarry Smith Logically Collective 491644a7f3ddSMatthew G. Knepley 491744a7f3ddSMatthew G. Knepley Input Parameter: 491820f4b53cSBarry Smith . dm - The `DM` 491944a7f3ddSMatthew G. Knepley 492044a7f3ddSMatthew G. Knepley Level: intermediate 492144a7f3ddSMatthew G. Knepley 49221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetNumFields()`, `DMSetField()` 492344a7f3ddSMatthew G. Knepley @*/ 4924d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearFields(DM dm) 4925d71ae5a4SJacob Faibussowitsch { 492644a7f3ddSMatthew G. Knepley PetscInt f; 492744a7f3ddSMatthew G. Knepley 492844a7f3ddSMatthew G. Knepley PetscFunctionBegin; 492944a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49304c4edb6fSBarry Smith if (!dm->fields) PetscFunctionReturn(PETSC_SUCCESS); // DMDA does not use fields field in DM 493144a7f3ddSMatthew G. Knepley for (f = 0; f < dm->Nf; ++f) { 49329566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 49339566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 493444a7f3ddSMatthew G. Knepley } 49359566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 493644a7f3ddSMatthew G. Knepley dm->fields = NULL; 493744a7f3ddSMatthew G. Knepley dm->Nf = 0; 49383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 493944a7f3ddSMatthew G. Knepley } 494044a7f3ddSMatthew G. Knepley 4941689b5837SMatthew G. Knepley /*@ 494220f4b53cSBarry Smith DMGetNumFields - Get the number of fields in the `DM` 4943689b5837SMatthew G. Knepley 494420f4b53cSBarry Smith Not Collective 4945689b5837SMatthew G. Knepley 4946689b5837SMatthew G. Knepley Input Parameter: 494720f4b53cSBarry Smith . dm - The `DM` 4948689b5837SMatthew G. Knepley 4949689b5837SMatthew G. Knepley Output Parameter: 495060225df5SJacob Faibussowitsch . numFields - The number of fields 4951689b5837SMatthew G. Knepley 4952689b5837SMatthew G. Knepley Level: intermediate 4953689b5837SMatthew G. Knepley 49541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNumFields()`, `DMSetField()` 4955689b5837SMatthew G. Knepley @*/ 4956d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumFields(DM dm, PetscInt *numFields) 4957d71ae5a4SJacob Faibussowitsch { 49580f21e855SMatthew G. Knepley PetscFunctionBegin; 49590f21e855SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49604f572ea9SToby Isaac PetscAssertPointer(numFields, 2); 496144a7f3ddSMatthew G. Knepley *numFields = dm->Nf; 49623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4963af122d2aSMatthew G Knepley } 4964af122d2aSMatthew G Knepley 4965689b5837SMatthew G. Knepley /*@ 496620f4b53cSBarry Smith DMSetNumFields - Set the number of fields in the `DM` 4967689b5837SMatthew G. Knepley 496820f4b53cSBarry Smith Logically Collective 4969689b5837SMatthew G. Knepley 4970689b5837SMatthew G. Knepley Input Parameters: 497120f4b53cSBarry Smith + dm - The `DM` 497260225df5SJacob Faibussowitsch - numFields - The number of fields 4973689b5837SMatthew G. Knepley 4974689b5837SMatthew G. Knepley Level: intermediate 4975689b5837SMatthew G. Knepley 49761cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetField()` 4977689b5837SMatthew G. Knepley @*/ 4978d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNumFields(DM dm, PetscInt numFields) 4979d71ae5a4SJacob Faibussowitsch { 49800f21e855SMatthew G. Knepley PetscInt Nf, f; 4981af122d2aSMatthew G Knepley 4982af122d2aSMatthew G Knepley PetscFunctionBegin; 4983af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49849566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 49850f21e855SMatthew G. Knepley for (f = Nf; f < numFields; ++f) { 49860f21e855SMatthew G. Knepley PetscContainer obj; 49870f21e855SMatthew G. Knepley 49889566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject)dm), &obj)); 49899566063dSJacob Faibussowitsch PetscCall(DMAddField(dm, NULL, (PetscObject)obj)); 49909566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&obj)); 4991af122d2aSMatthew G Knepley } 49923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4993af122d2aSMatthew G Knepley } 4994af122d2aSMatthew G Knepley 4995c1929be8SMatthew G. Knepley /*@ 4996bb7acecfSBarry Smith DMGetField - Return the `DMLabel` and discretization object for a given `DM` field 4997c1929be8SMatthew G. Knepley 499820f4b53cSBarry Smith Not Collective 4999c1929be8SMatthew G. Knepley 5000c1929be8SMatthew G. Knepley Input Parameters: 5001bb7acecfSBarry Smith + dm - The `DM` 5002c1929be8SMatthew G. Knepley - f - The field number 5003c1929be8SMatthew G. Knepley 500444a7f3ddSMatthew G. Knepley Output Parameters: 500520f4b53cSBarry Smith + label - The label indicating the support of the field, or `NULL` for the entire mesh (pass in `NULL` if not needed) 500620f4b53cSBarry Smith - disc - The discretization object (pass in `NULL` if not needed) 5007c1929be8SMatthew G. Knepley 500844a7f3ddSMatthew G. Knepley Level: intermediate 5009c1929be8SMatthew G. Knepley 50101cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()` 5011c1929be8SMatthew G. Knepley @*/ 5012d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetField(DM dm, PetscInt f, DMLabel *label, PetscObject *disc) 5013d71ae5a4SJacob Faibussowitsch { 5014af122d2aSMatthew G Knepley PetscFunctionBegin; 5015af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 50164f572ea9SToby Isaac PetscAssertPointer(disc, 4); 50177a8be351SBarry Smith PetscCheck((f >= 0) && (f < dm->Nf), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, dm->Nf); 50184c4edb6fSBarry Smith if (!dm->fields) { 50194c4edb6fSBarry Smith if (label) *label = NULL; 50204c4edb6fSBarry Smith if (disc) *disc = NULL; 50214c4edb6fSBarry Smith } else { // some DM such as DMDA do not have dm->fields 502244a7f3ddSMatthew G. Knepley if (label) *label = dm->fields[f].label; 5023bb7acecfSBarry Smith if (disc) *disc = dm->fields[f].disc; 50244c4edb6fSBarry Smith } 50253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5026decb47aaSMatthew G. Knepley } 5027decb47aaSMatthew G. Knepley 5028083401c6SMatthew G. Knepley /* Does not clear the DS */ 5029d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField_Internal(DM dm, PetscInt f, DMLabel label, PetscObject disc) 5030d71ae5a4SJacob Faibussowitsch { 5031083401c6SMatthew G. Knepley PetscFunctionBegin; 50329566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, f + 1)); 50339566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 50349566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 5035083401c6SMatthew G. Knepley dm->fields[f].label = label; 5036bb7acecfSBarry Smith dm->fields[f].disc = disc; 50379566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 5038835f2295SStefano Zampini PetscCall(PetscObjectReference(disc)); 50393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5040083401c6SMatthew G. Knepley } 5041083401c6SMatthew G. Knepley 5042ffeef943SBarry Smith /*@ 5043bb7acecfSBarry Smith DMSetField - Set the discretization object for a given `DM` field. Usually one would call `DMAddField()` which automatically handles 5044bb7acecfSBarry Smith the field numbering. 5045c1929be8SMatthew G. Knepley 504620f4b53cSBarry Smith Logically Collective 5047c1929be8SMatthew G. Knepley 5048c1929be8SMatthew G. Knepley Input Parameters: 5049bb7acecfSBarry Smith + dm - The `DM` 5050c1929be8SMatthew G. Knepley . f - The field number 505120f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh 5052bb7acecfSBarry Smith - disc - The discretization object 5053c1929be8SMatthew G. Knepley 505444a7f3ddSMatthew G. Knepley Level: intermediate 5055c1929be8SMatthew G. Knepley 50561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()` 5057c1929be8SMatthew G. Knepley @*/ 5058d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField(DM dm, PetscInt f, DMLabel label, PetscObject disc) 5059d71ae5a4SJacob Faibussowitsch { 5060decb47aaSMatthew G. Knepley PetscFunctionBegin; 5061decb47aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5062e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 5063bb7acecfSBarry Smith PetscValidHeader(disc, 4); 50647a8be351SBarry Smith PetscCheck(f >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be non-negative", f); 5065bb7acecfSBarry Smith PetscCall(DMSetField_Internal(dm, f, label, disc)); 5066bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, f, disc)); 50679566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 50683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 506944a7f3ddSMatthew G. Knepley } 507044a7f3ddSMatthew G. Knepley 5071ffeef943SBarry Smith /*@ 5072bb7acecfSBarry Smith DMAddField - Add a field to a `DM` object. A field is a function space defined by of a set of discretization points (geometric entities) 5073bb7acecfSBarry Smith and a discretization object that defines the function space associated with those points. 507444a7f3ddSMatthew G. Knepley 507520f4b53cSBarry Smith Logically Collective 507644a7f3ddSMatthew G. Knepley 507744a7f3ddSMatthew G. Knepley Input Parameters: 5078bb7acecfSBarry Smith + dm - The `DM` 507920f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh 5080bb7acecfSBarry Smith - disc - The discretization object 508144a7f3ddSMatthew G. Knepley 508244a7f3ddSMatthew G. Knepley Level: intermediate 508344a7f3ddSMatthew G. Knepley 5084bb7acecfSBarry Smith Notes: 5085bb7acecfSBarry Smith The label already exists or will be added to the `DM` with `DMSetLabel()`. 5086bb7acecfSBarry Smith 5087da81f932SPierre Jolivet For example, a piecewise continuous pressure field can be defined by coefficients at the cell centers of a mesh and piecewise constant functions 5088bb7acecfSBarry Smith within each cell. Thus a specific function in the space is defined by the combination of a `Vec` containing the coefficients, a `DM` defining the 5089bb7acecfSBarry Smith geometry entities, a `DMLabel` indicating a subset of those geometric entities, and a discretization object, such as a `PetscFE`. 5090bb7acecfSBarry Smith 5091ce78bad3SBarry Smith Fortran Note: 5092ce78bad3SBarry Smith Use the argument `PetscObjectCast(disc)` as the second argument 5093ce78bad3SBarry Smith 50941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLabel()`, `DMSetField()`, `DMGetField()`, `PetscFE` 509544a7f3ddSMatthew G. Knepley @*/ 5096d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddField(DM dm, DMLabel label, PetscObject disc) 5097d71ae5a4SJacob Faibussowitsch { 509844a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf; 509944a7f3ddSMatthew G. Knepley 510044a7f3ddSMatthew G. Knepley PetscFunctionBegin; 510144a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5102064a246eSJacob Faibussowitsch if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 5103bb7acecfSBarry Smith PetscValidHeader(disc, 3); 51049566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, Nf + 1)); 510544a7f3ddSMatthew G. Knepley dm->fields[Nf].label = label; 5106bb7acecfSBarry Smith dm->fields[Nf].disc = disc; 51079566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 5108835f2295SStefano Zampini PetscCall(PetscObjectReference(disc)); 5109bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, Nf, disc)); 51109566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 51113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5112af122d2aSMatthew G Knepley } 51136636e97aSMatthew G Knepley 5114e5e52638SMatthew G. Knepley /*@ 5115e0b68406SMatthew Knepley DMSetFieldAvoidTensor - Set flag to avoid defining the field on tensor cells 5116e0b68406SMatthew Knepley 511720f4b53cSBarry Smith Logically Collective 5118e0b68406SMatthew Knepley 5119e0b68406SMatthew Knepley Input Parameters: 5120bb7acecfSBarry Smith + dm - The `DM` 5121e0b68406SMatthew Knepley . f - The field index 5122bb7acecfSBarry Smith - avoidTensor - `PETSC_TRUE` to skip defining the field on tensor cells 5123e0b68406SMatthew Knepley 5124e0b68406SMatthew Knepley Level: intermediate 5125e0b68406SMatthew Knepley 51261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()` 5127e0b68406SMatthew Knepley @*/ 5128d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFieldAvoidTensor(DM dm, PetscInt f, PetscBool avoidTensor) 5129d71ae5a4SJacob Faibussowitsch { 5130e0b68406SMatthew Knepley PetscFunctionBegin; 513163a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5132e0b68406SMatthew Knepley dm->fields[f].avoidTensor = avoidTensor; 51333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5134e0b68406SMatthew Knepley } 5135e0b68406SMatthew Knepley 5136e0b68406SMatthew Knepley /*@ 5137e0b68406SMatthew Knepley DMGetFieldAvoidTensor - Get flag to avoid defining the field on tensor cells 5138e0b68406SMatthew Knepley 513920f4b53cSBarry Smith Not Collective 5140e0b68406SMatthew Knepley 5141e0b68406SMatthew Knepley Input Parameters: 5142bb7acecfSBarry Smith + dm - The `DM` 5143e0b68406SMatthew Knepley - f - The field index 5144e0b68406SMatthew Knepley 5145e0b68406SMatthew Knepley Output Parameter: 5146e0b68406SMatthew Knepley . avoidTensor - The flag to avoid defining the field on tensor cells 5147e0b68406SMatthew Knepley 5148e0b68406SMatthew Knepley Level: intermediate 5149e0b68406SMatthew Knepley 515060225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`, `DMGetField()`, `DMSetFieldAvoidTensor()` 5151e0b68406SMatthew Knepley @*/ 5152d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFieldAvoidTensor(DM dm, PetscInt f, PetscBool *avoidTensor) 5153d71ae5a4SJacob Faibussowitsch { 5154e0b68406SMatthew Knepley PetscFunctionBegin; 515563a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5156e0b68406SMatthew Knepley *avoidTensor = dm->fields[f].avoidTensor; 51573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5158e0b68406SMatthew Knepley } 5159e0b68406SMatthew Knepley 5160e0b68406SMatthew Knepley /*@ 5161bb7acecfSBarry Smith DMCopyFields - Copy the discretizations for the `DM` into another `DM` 5162e5e52638SMatthew G. Knepley 516320f4b53cSBarry Smith Collective 5164e5e52638SMatthew G. Knepley 5165bb4b53efSMatthew G. Knepley Input Parameters: 5166bb4b53efSMatthew G. Knepley + dm - The `DM` 5167bb4b53efSMatthew G. Knepley . minDegree - Minimum degree for a discretization, or `PETSC_DETERMINE` for no limit 5168bb4b53efSMatthew G. Knepley - maxDegree - Maximum degree for a discretization, or `PETSC_DETERMINE` for no limit 5169e5e52638SMatthew G. Knepley 5170e5e52638SMatthew G. Knepley Output Parameter: 5171bb7acecfSBarry Smith . newdm - The `DM` 5172e5e52638SMatthew G. Knepley 5173e5e52638SMatthew G. Knepley Level: advanced 5174e5e52638SMatthew G. Knepley 51751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetField()`, `DMSetField()`, `DMAddField()`, `DMCopyDS()`, `DMGetDS()`, `DMGetCellDS()` 5176e5e52638SMatthew G. Knepley @*/ 5177bb4b53efSMatthew G. Knepley PetscErrorCode DMCopyFields(DM dm, PetscInt minDegree, PetscInt maxDegree, DM newdm) 5178d71ae5a4SJacob Faibussowitsch { 5179e5e52638SMatthew G. Knepley PetscInt Nf, f; 5180e5e52638SMatthew G. Knepley 5181e5e52638SMatthew G. Knepley PetscFunctionBegin; 51823ba16761SJacob Faibussowitsch if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS); 51839566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 51849566063dSJacob Faibussowitsch PetscCall(DMClearFields(newdm)); 5185e5e52638SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5186e5e52638SMatthew G. Knepley DMLabel label; 5187e5e52638SMatthew G. Knepley PetscObject field; 5188bb4b53efSMatthew G. Knepley PetscClassId id; 518934aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 5190e5e52638SMatthew G. Knepley 51919566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, &label, &field)); 5192bb4b53efSMatthew G. Knepley PetscCall(PetscObjectGetClassId(field, &id)); 5193bb4b53efSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 5194bb4b53efSMatthew G. Knepley PetscFE newfe; 5195bb4b53efSMatthew G. Knepley 5196bb4b53efSMatthew G. Knepley PetscCall(PetscFELimitDegree((PetscFE)field, minDegree, maxDegree, &newfe)); 5197bb4b53efSMatthew G. Knepley PetscCall(DMSetField(newdm, f, label, (PetscObject)newfe)); 5198bb4b53efSMatthew G. Knepley PetscCall(PetscFEDestroy(&newfe)); 5199bb4b53efSMatthew G. Knepley } else { 52009566063dSJacob Faibussowitsch PetscCall(DMSetField(newdm, f, label, field)); 5201bb4b53efSMatthew G. Knepley } 52029566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, f, &useCone, &useClosure)); 52039566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(newdm, f, useCone, useClosure)); 520434aa8a36SMatthew G. Knepley } 52053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 520634aa8a36SMatthew G. Knepley } 520734aa8a36SMatthew G. Knepley 520834aa8a36SMatthew G. Knepley /*@ 520934aa8a36SMatthew G. Knepley DMGetAdjacency - Returns the flags for determining variable influence 521034aa8a36SMatthew G. Knepley 521120f4b53cSBarry Smith Not Collective 521234aa8a36SMatthew G. Knepley 521334aa8a36SMatthew G. Knepley Input Parameters: 521420f4b53cSBarry Smith + dm - The `DM` object 521520f4b53cSBarry Smith - f - The field number, or `PETSC_DEFAULT` for the default adjacency 521634aa8a36SMatthew G. Knepley 5217d8d19677SJose E. Roman Output Parameters: 521834aa8a36SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 521934aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 522034aa8a36SMatthew G. Knepley 522134aa8a36SMatthew G. Knepley Level: developer 522234aa8a36SMatthew G. Knepley 522320f4b53cSBarry Smith Notes: 522420f4b53cSBarry Smith .vb 522520f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 522620f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 522720f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 522820f4b53cSBarry Smith .ve 522920f4b53cSBarry Smith Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 523020f4b53cSBarry Smith 52311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetAdjacency()`, `DMGetField()`, `DMSetField()` 523234aa8a36SMatthew G. Knepley @*/ 5233d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAdjacency(DM dm, PetscInt f, PetscBool *useCone, PetscBool *useClosure) 5234d71ae5a4SJacob Faibussowitsch { 523534aa8a36SMatthew G. Knepley PetscFunctionBegin; 523634aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 52374f572ea9SToby Isaac if (useCone) PetscAssertPointer(useCone, 3); 52384f572ea9SToby Isaac if (useClosure) PetscAssertPointer(useClosure, 4); 523934aa8a36SMatthew G. Knepley if (f < 0) { 524034aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->adjacency[0]; 524134aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->adjacency[1]; 524234aa8a36SMatthew G. Knepley } else { 524334aa8a36SMatthew G. Knepley PetscInt Nf; 524434aa8a36SMatthew G. Knepley 52459566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 52467a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 524734aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->fields[f].adjacency[0]; 524834aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->fields[f].adjacency[1]; 524934aa8a36SMatthew G. Knepley } 52503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 525134aa8a36SMatthew G. Knepley } 525234aa8a36SMatthew G. Knepley 525334aa8a36SMatthew G. Knepley /*@ 525434aa8a36SMatthew G. Knepley DMSetAdjacency - Set the flags for determining variable influence 525534aa8a36SMatthew G. Knepley 525620f4b53cSBarry Smith Not Collective 525734aa8a36SMatthew G. Knepley 525834aa8a36SMatthew G. Knepley Input Parameters: 525920f4b53cSBarry Smith + dm - The `DM` object 526034aa8a36SMatthew G. Knepley . f - The field number 526134aa8a36SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 526234aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 526334aa8a36SMatthew G. Knepley 526434aa8a36SMatthew G. Knepley Level: developer 526534aa8a36SMatthew G. Knepley 526620f4b53cSBarry Smith Notes: 526720f4b53cSBarry Smith .vb 526820f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 526920f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 527020f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 527120f4b53cSBarry Smith .ve 527220f4b53cSBarry Smith Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 527320f4b53cSBarry Smith 52741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetAdjacency()`, `DMGetField()`, `DMSetField()` 527534aa8a36SMatthew G. Knepley @*/ 5276d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAdjacency(DM dm, PetscInt f, PetscBool useCone, PetscBool useClosure) 5277d71ae5a4SJacob Faibussowitsch { 527834aa8a36SMatthew G. Knepley PetscFunctionBegin; 527934aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 528034aa8a36SMatthew G. Knepley if (f < 0) { 528134aa8a36SMatthew G. Knepley dm->adjacency[0] = useCone; 528234aa8a36SMatthew G. Knepley dm->adjacency[1] = useClosure; 528334aa8a36SMatthew G. Knepley } else { 528434aa8a36SMatthew G. Knepley PetscInt Nf; 528534aa8a36SMatthew G. Knepley 52869566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 52877a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 528834aa8a36SMatthew G. Knepley dm->fields[f].adjacency[0] = useCone; 528934aa8a36SMatthew G. Knepley dm->fields[f].adjacency[1] = useClosure; 5290e5e52638SMatthew G. Knepley } 52913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5292e5e52638SMatthew G. Knepley } 5293e5e52638SMatthew G. Knepley 5294b0441da4SMatthew G. Knepley /*@ 5295b0441da4SMatthew G. Knepley DMGetBasicAdjacency - Returns the flags for determining variable influence, using either the default or field 0 if it is defined 5296b0441da4SMatthew G. Knepley 5297b0441da4SMatthew G. Knepley Not collective 5298b0441da4SMatthew G. Knepley 5299f899ff85SJose E. Roman Input Parameter: 530020f4b53cSBarry Smith . dm - The `DM` object 5301b0441da4SMatthew G. Knepley 5302d8d19677SJose E. Roman Output Parameters: 5303b0441da4SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 5304b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5305b0441da4SMatthew G. Knepley 5306b0441da4SMatthew G. Knepley Level: developer 5307b0441da4SMatthew G. Knepley 530820f4b53cSBarry Smith Notes: 530920f4b53cSBarry Smith .vb 531020f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 531120f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 531220f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 531320f4b53cSBarry Smith .ve 531420f4b53cSBarry Smith 53151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5316b0441da4SMatthew G. Knepley @*/ 5317d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasicAdjacency(DM dm, PetscBool *useCone, PetscBool *useClosure) 5318d71ae5a4SJacob Faibussowitsch { 5319b0441da4SMatthew G. Knepley PetscInt Nf; 5320b0441da4SMatthew G. Knepley 5321b0441da4SMatthew G. Knepley PetscFunctionBegin; 5322b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 53234f572ea9SToby Isaac if (useCone) PetscAssertPointer(useCone, 2); 53244f572ea9SToby Isaac if (useClosure) PetscAssertPointer(useClosure, 3); 53259566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5326b0441da4SMatthew G. Knepley if (!Nf) { 53279566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5328b0441da4SMatthew G. Knepley } else { 53299566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, 0, useCone, useClosure)); 5330b0441da4SMatthew G. Knepley } 53313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5332b0441da4SMatthew G. Knepley } 5333b0441da4SMatthew G. Knepley 5334b0441da4SMatthew G. Knepley /*@ 5335b0441da4SMatthew G. Knepley DMSetBasicAdjacency - Set the flags for determining variable influence, using either the default or field 0 if it is defined 5336b0441da4SMatthew G. Knepley 533720f4b53cSBarry Smith Not Collective 5338b0441da4SMatthew G. Knepley 5339b0441da4SMatthew G. Knepley Input Parameters: 534020f4b53cSBarry Smith + dm - The `DM` object 5341b0441da4SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 5342b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5343b0441da4SMatthew G. Knepley 5344b0441da4SMatthew G. Knepley Level: developer 5345b0441da4SMatthew G. Knepley 534620f4b53cSBarry Smith Notes: 534720f4b53cSBarry Smith .vb 534820f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 534920f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 535020f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 535120f4b53cSBarry Smith .ve 535220f4b53cSBarry Smith 53531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5354b0441da4SMatthew G. Knepley @*/ 5355d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetBasicAdjacency(DM dm, PetscBool useCone, PetscBool useClosure) 5356d71ae5a4SJacob Faibussowitsch { 5357b0441da4SMatthew G. Knepley PetscInt Nf; 5358b0441da4SMatthew G. Knepley 5359b0441da4SMatthew G. Knepley PetscFunctionBegin; 5360b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 53619566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5362b0441da4SMatthew G. Knepley if (!Nf) { 53639566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5364b0441da4SMatthew G. Knepley } else { 53659566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, 0, useCone, useClosure)); 5366e5e52638SMatthew G. Knepley } 53673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5368e5e52638SMatthew G. Knepley } 5369e5e52638SMatthew G. Knepley 5370d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompleteBCLabels_Internal(DM dm) 5371d71ae5a4SJacob Faibussowitsch { 5372799db056SMatthew G. Knepley DM plex; 5373799db056SMatthew G. Knepley DMLabel *labels, *glabels; 5374799db056SMatthew G. Knepley const char **names; 5375799db056SMatthew G. Knepley char *sendNames, *recvNames; 5376799db056SMatthew G. Knepley PetscInt Nds, s, maxLabels = 0, maxLen = 0, gmaxLen, Nl = 0, gNl, l, gl, m; 5377799db056SMatthew G. Knepley size_t len; 5378799db056SMatthew G. Knepley MPI_Comm comm; 5379799db056SMatthew G. Knepley PetscMPIInt rank, size, p, *counts, *displs; 5380783e2ec8SMatthew G. Knepley 5381783e2ec8SMatthew G. Knepley PetscFunctionBegin; 5382799db056SMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 5383799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(comm, &size)); 5384799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5385799db056SMatthew G. Knepley PetscCall(DMGetNumDS(dm, &Nds)); 5386799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5387799db056SMatthew G. Knepley PetscDS dsBC; 5388799db056SMatthew G. Knepley PetscInt numBd; 5389799db056SMatthew G. Knepley 539007218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL)); 5391799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5392799db056SMatthew G. Knepley maxLabels += numBd; 5393799db056SMatthew G. Knepley } 5394799db056SMatthew G. Knepley PetscCall(PetscCalloc1(maxLabels, &labels)); 5395799db056SMatthew G. Knepley /* Get list of labels to be completed */ 5396799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5397799db056SMatthew G. Knepley PetscDS dsBC; 5398799db056SMatthew G. Knepley PetscInt numBd, bd; 5399799db056SMatthew G. Knepley 540007218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL)); 5401799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5402799db056SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 5403799db056SMatthew G. Knepley DMLabel label; 5404799db056SMatthew G. Knepley PetscInt field; 5405799db056SMatthew G. Knepley PetscObject obj; 5406799db056SMatthew G. Knepley PetscClassId id; 5407799db056SMatthew G. Knepley 5408799db056SMatthew G. Knepley PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 54099566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 54109566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 5411fa74d514SMatthew G. Knepley if (id != PETSCFE_CLASSID || !label) continue; 54129371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 54139371c9d4SSatish Balay if (labels[l] == label) break; 5414799db056SMatthew G. Knepley if (l == Nl) labels[Nl++] = label; 5415783e2ec8SMatthew G. Knepley } 5416799db056SMatthew G. Knepley } 5417799db056SMatthew G. Knepley /* Get label names */ 5418799db056SMatthew G. Knepley PetscCall(PetscMalloc1(Nl, &names)); 5419799db056SMatthew G. Knepley for (l = 0; l < Nl; ++l) PetscCall(PetscObjectGetName((PetscObject)labels[l], &names[l])); 54209371c9d4SSatish Balay for (l = 0; l < Nl; ++l) { 54219371c9d4SSatish Balay PetscCall(PetscStrlen(names[l], &len)); 54229371c9d4SSatish Balay maxLen = PetscMax(maxLen, (PetscInt)len + 2); 54239371c9d4SSatish Balay } 5424799db056SMatthew G. Knepley PetscCall(PetscFree(labels)); 5425462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&maxLen, &gmaxLen, 1, MPIU_INT, MPI_MAX, comm)); 5426799db056SMatthew G. Knepley PetscCall(PetscCalloc1(Nl * gmaxLen, &sendNames)); 5427c6a7a370SJeremy L Thompson for (l = 0; l < Nl; ++l) PetscCall(PetscStrncpy(&sendNames[gmaxLen * l], names[l], gmaxLen)); 5428799db056SMatthew G. Knepley PetscCall(PetscFree(names)); 5429799db056SMatthew G. Knepley /* Put all names on all processes */ 5430799db056SMatthew G. Knepley PetscCall(PetscCalloc2(size, &counts, size + 1, &displs)); 5431799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgather(&Nl, 1, MPI_INT, counts, 1, MPI_INT, comm)); 5432799db056SMatthew G. Knepley for (p = 0; p < size; ++p) displs[p + 1] = displs[p] + counts[p]; 5433799db056SMatthew G. Knepley gNl = displs[size]; 54349371c9d4SSatish Balay for (p = 0; p < size; ++p) { 54359371c9d4SSatish Balay counts[p] *= gmaxLen; 54369371c9d4SSatish Balay displs[p] *= gmaxLen; 54379371c9d4SSatish Balay } 5438799db056SMatthew G. Knepley PetscCall(PetscCalloc2(gNl * gmaxLen, &recvNames, gNl, &glabels)); 5439799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgatherv(sendNames, counts[rank], MPI_CHAR, recvNames, counts, displs, MPI_CHAR, comm)); 5440799db056SMatthew G. Knepley PetscCall(PetscFree2(counts, displs)); 5441799db056SMatthew G. Knepley PetscCall(PetscFree(sendNames)); 5442799db056SMatthew G. Knepley for (l = 0, gl = 0; l < gNl; ++l) { 5443799db056SMatthew G. Knepley PetscCall(DMGetLabel(dm, &recvNames[l * gmaxLen], &glabels[gl])); 5444799db056SMatthew G. Knepley PetscCheck(glabels[gl], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Label %s missing on rank %d", &recvNames[l * gmaxLen], rank); 54459371c9d4SSatish Balay for (m = 0; m < gl; ++m) 54465d6b2bfcSJames Wright if (glabels[m] == glabels[gl]) goto next_label; 54479566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 5448799db056SMatthew G. Knepley PetscCall(DMPlexLabelComplete(plex, glabels[gl])); 54499566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 5450799db056SMatthew G. Knepley ++gl; 54515d6b2bfcSJames Wright next_label: 54525d6b2bfcSJames Wright continue; 5453783e2ec8SMatthew G. Knepley } 5454799db056SMatthew G. Knepley PetscCall(PetscFree2(recvNames, glabels)); 54553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5456783e2ec8SMatthew G. Knepley } 5457783e2ec8SMatthew G. Knepley 5458d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDSEnlarge_Static(DM dm, PetscInt NdsNew) 5459d71ae5a4SJacob Faibussowitsch { 5460e5e52638SMatthew G. Knepley DMSpace *tmpd; 5461e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5462e5e52638SMatthew G. Knepley 5463e5e52638SMatthew G. Knepley PetscFunctionBegin; 54643ba16761SJacob Faibussowitsch if (Nds >= NdsNew) PetscFunctionReturn(PETSC_SUCCESS); 54659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NdsNew, &tmpd)); 5466e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) tmpd[s] = dm->probs[s]; 54679371c9d4SSatish Balay for (s = Nds; s < NdsNew; ++s) { 54689371c9d4SSatish Balay tmpd[s].ds = NULL; 54699371c9d4SSatish Balay tmpd[s].label = NULL; 54709371c9d4SSatish Balay tmpd[s].fields = NULL; 54719371c9d4SSatish Balay } 54729566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5473e5e52638SMatthew G. Knepley dm->Nds = NdsNew; 5474e5e52638SMatthew G. Knepley dm->probs = tmpd; 54753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5476e5e52638SMatthew G. Knepley } 5477e5e52638SMatthew G. Knepley 5478e5e52638SMatthew G. Knepley /*@ 547920f4b53cSBarry Smith DMGetNumDS - Get the number of discrete systems in the `DM` 5480e5e52638SMatthew G. Knepley 548120f4b53cSBarry Smith Not Collective 5482e5e52638SMatthew G. Knepley 5483e5e52638SMatthew G. Knepley Input Parameter: 548420f4b53cSBarry Smith . dm - The `DM` 5485e5e52638SMatthew G. Knepley 5486e5e52638SMatthew G. Knepley Output Parameter: 548720f4b53cSBarry Smith . Nds - The number of `PetscDS` objects 5488e5e52638SMatthew G. Knepley 5489e5e52638SMatthew G. Knepley Level: intermediate 5490e5e52638SMatthew G. Knepley 54911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMGetCellDS()` 5492e5e52638SMatthew G. Knepley @*/ 5493d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumDS(DM dm, PetscInt *Nds) 5494d71ae5a4SJacob Faibussowitsch { 5495e5e52638SMatthew G. Knepley PetscFunctionBegin; 5496e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 54974f572ea9SToby Isaac PetscAssertPointer(Nds, 2); 5498e5e52638SMatthew G. Knepley *Nds = dm->Nds; 54993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5500e5e52638SMatthew G. Knepley } 5501e5e52638SMatthew G. Knepley 5502e5e52638SMatthew G. Knepley /*@ 550320f4b53cSBarry Smith DMClearDS - Remove all discrete systems from the `DM` 5504e5e52638SMatthew G. Knepley 550520f4b53cSBarry Smith Logically Collective 5506e5e52638SMatthew G. Knepley 5507e5e52638SMatthew G. Knepley Input Parameter: 550820f4b53cSBarry Smith . dm - The `DM` 5509e5e52638SMatthew G. Knepley 5510e5e52638SMatthew G. Knepley Level: intermediate 5511e5e52638SMatthew G. Knepley 55121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumDS()`, `DMGetDS()`, `DMSetField()` 5513e5e52638SMatthew G. Knepley @*/ 5514d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearDS(DM dm) 5515d71ae5a4SJacob Faibussowitsch { 5516e5e52638SMatthew G. Knepley PetscInt s; 5517e5e52638SMatthew G. Knepley 5518e5e52638SMatthew G. Knepley PetscFunctionBegin; 5519e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5520e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 55219566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 552207218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[s].dsIn)); 55239566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[s].label)); 55249566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[s].fields)); 5525e5e52638SMatthew G. Knepley } 55269566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5527e5e52638SMatthew G. Knepley dm->probs = NULL; 5528e5e52638SMatthew G. Knepley dm->Nds = 0; 55293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5530e5e52638SMatthew G. Knepley } 5531e5e52638SMatthew G. Knepley 5532e5e52638SMatthew G. Knepley /*@ 553320f4b53cSBarry Smith DMGetDS - Get the default `PetscDS` 5534e5e52638SMatthew G. Knepley 553520f4b53cSBarry Smith Not Collective 5536e5e52638SMatthew G. Knepley 5537e5e52638SMatthew G. Knepley Input Parameter: 553820f4b53cSBarry Smith . dm - The `DM` 5539e5e52638SMatthew G. Knepley 5540e5e52638SMatthew G. Knepley Output Parameter: 554107218a29SMatthew G. Knepley . ds - The default `PetscDS` 5542e5e52638SMatthew G. Knepley 5543e5e52638SMatthew G. Knepley Level: intermediate 5544e5e52638SMatthew G. Knepley 5545ce78bad3SBarry Smith Note: 5546ce78bad3SBarry Smith The `ds` is owned by the `dm` and should not be destroyed directly. 5547ce78bad3SBarry Smith 55481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCellDS()`, `DMGetRegionDS()` 5549e5e52638SMatthew G. Knepley @*/ 555007218a29SMatthew G. Knepley PetscErrorCode DMGetDS(DM dm, PetscDS *ds) 5551d71ae5a4SJacob Faibussowitsch { 5552e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5553e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 55544f572ea9SToby Isaac PetscAssertPointer(ds, 2); 555507218a29SMatthew G. Knepley PetscCheck(dm->Nds > 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Need to call DMCreateDS() before calling DMGetDS()"); 555607218a29SMatthew G. Knepley *ds = dm->probs[0].ds; 55573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5558e5e52638SMatthew G. Knepley } 5559e5e52638SMatthew G. Knepley 5560e5e52638SMatthew G. Knepley /*@ 556120f4b53cSBarry Smith DMGetCellDS - Get the `PetscDS` defined on a given cell 5562e5e52638SMatthew G. Knepley 556320f4b53cSBarry Smith Not Collective 5564e5e52638SMatthew G. Knepley 5565e5e52638SMatthew G. Knepley Input Parameters: 556620f4b53cSBarry Smith + dm - The `DM` 556720f4b53cSBarry Smith - point - Cell for the `PetscDS` 5568e5e52638SMatthew G. Knepley 556907218a29SMatthew G. Knepley Output Parameters: 557007218a29SMatthew G. Knepley + ds - The `PetscDS` defined on the given cell 557107218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or NULL if the same ds 5572e5e52638SMatthew G. Knepley 5573e5e52638SMatthew G. Knepley Level: developer 5574e5e52638SMatthew G. Knepley 55751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMSetRegionDS()` 5576e5e52638SMatthew G. Knepley @*/ 557707218a29SMatthew G. Knepley PetscErrorCode DMGetCellDS(DM dm, PetscInt point, PetscDS *ds, PetscDS *dsIn) 5578d71ae5a4SJacob Faibussowitsch { 557907218a29SMatthew G. Knepley PetscDS dsDef = NULL; 5580e5e52638SMatthew G. Knepley PetscInt s; 5581e5e52638SMatthew G. Knepley 5582e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5583e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 55844f572ea9SToby Isaac if (ds) PetscAssertPointer(ds, 3); 55854f572ea9SToby Isaac if (dsIn) PetscAssertPointer(dsIn, 4); 558663a3b9bcSJacob Faibussowitsch PetscCheck(point >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Mesh point cannot be negative: %" PetscInt_FMT, point); 558707218a29SMatthew G. Knepley if (ds) *ds = NULL; 558807218a29SMatthew G. Knepley if (dsIn) *dsIn = NULL; 5589e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 5590e5e52638SMatthew G. Knepley PetscInt val; 5591e5e52638SMatthew G. Knepley 55929371c9d4SSatish Balay if (!dm->probs[s].label) { 559307218a29SMatthew G. Knepley dsDef = dm->probs[s].ds; 55949371c9d4SSatish Balay } else { 55959566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(dm->probs[s].label, point, &val)); 55969371c9d4SSatish Balay if (val >= 0) { 559707218a29SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 559807218a29SMatthew G. Knepley if (dsIn) *dsIn = dm->probs[s].dsIn; 55999371c9d4SSatish Balay break; 56009371c9d4SSatish Balay } 5601e5e52638SMatthew G. Knepley } 5602e5e52638SMatthew G. Knepley } 560307218a29SMatthew G. Knepley if (ds && !*ds) *ds = dsDef; 56043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5605e5e52638SMatthew G. Knepley } 5606e5e52638SMatthew G. Knepley 5607e5e52638SMatthew G. Knepley /*@ 560820f4b53cSBarry Smith DMGetRegionDS - Get the `PetscDS` for a given mesh region, defined by a `DMLabel` 5609e5e52638SMatthew G. Knepley 561020f4b53cSBarry Smith Not Collective 5611e5e52638SMatthew G. Knepley 5612e5e52638SMatthew G. Knepley Input Parameters: 561320f4b53cSBarry Smith + dm - The `DM` 561420f4b53cSBarry Smith - label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh 5615e5e52638SMatthew G. Knepley 5616b3cf3223SMatthew G. Knepley Output Parameters: 561720f4b53cSBarry Smith + fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` 561807218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` 561907218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input in the given region, or `NULL` 5620e5e52638SMatthew G. Knepley 5621e5e52638SMatthew G. Knepley Level: advanced 5622e5e52638SMatthew G. Knepley 562320f4b53cSBarry Smith Note: 562420f4b53cSBarry Smith If a non-`NULL` label is given, but there is no `PetscDS` on that specific label, 562520f4b53cSBarry Smith the `PetscDS` for the full domain (if present) is returned. Returns with 562607218a29SMatthew G. Knepley fields = `NULL` and ds = `NULL` if there is no `PetscDS` for the full domain. 562720f4b53cSBarry Smith 56281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5629e5e52638SMatthew G. Knepley @*/ 563007218a29SMatthew G. Knepley PetscErrorCode DMGetRegionDS(DM dm, DMLabel label, IS *fields, PetscDS *ds, PetscDS *dsIn) 5631d71ae5a4SJacob Faibussowitsch { 5632e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5633e5e52638SMatthew G. Knepley 5634e5e52638SMatthew G. Knepley PetscFunctionBegin; 5635e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5636e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 56379371c9d4SSatish Balay if (fields) { 56384f572ea9SToby Isaac PetscAssertPointer(fields, 3); 56399371c9d4SSatish Balay *fields = NULL; 56409371c9d4SSatish Balay } 56419371c9d4SSatish Balay if (ds) { 56424f572ea9SToby Isaac PetscAssertPointer(ds, 4); 56439371c9d4SSatish Balay *ds = NULL; 56449371c9d4SSatish Balay } 564507218a29SMatthew G. Knepley if (dsIn) { 56464f572ea9SToby Isaac PetscAssertPointer(dsIn, 5); 564707218a29SMatthew G. Knepley *dsIn = NULL; 564807218a29SMatthew G. Knepley } 5649e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5650154ca461SJed Brown if (dm->probs[s].label == label || !dm->probs[s].label) { 5651b3cf3223SMatthew G. Knepley if (fields) *fields = dm->probs[s].fields; 5652b3cf3223SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 565307218a29SMatthew G. Knepley if (dsIn) *dsIn = dm->probs[s].dsIn; 56543ba16761SJacob Faibussowitsch if (dm->probs[s].label) PetscFunctionReturn(PETSC_SUCCESS); 5655b3cf3223SMatthew G. Knepley } 5656e5e52638SMatthew G. Knepley } 56573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5658e5e52638SMatthew G. Knepley } 5659e5e52638SMatthew G. Knepley 5660e5e52638SMatthew G. Knepley /*@ 5661bb7acecfSBarry Smith DMSetRegionDS - Set the `PetscDS` for a given mesh region, defined by a `DMLabel` 5662083401c6SMatthew G. Knepley 566320f4b53cSBarry Smith Collective 5664083401c6SMatthew G. Knepley 5665083401c6SMatthew G. Knepley Input Parameters: 5666bb7acecfSBarry Smith + dm - The `DM` 566720f4b53cSBarry Smith . label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh 566807218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` for all fields 566907218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region 567007218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS` 5671083401c6SMatthew G. Knepley 567220f4b53cSBarry Smith Level: advanced 567320f4b53cSBarry Smith 5674bb7acecfSBarry Smith Note: 5675bb7acecfSBarry Smith If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`. If the `PetscDS` is replaced, 5676083401c6SMatthew G. Knepley the fields argument is ignored. 5677083401c6SMatthew G. Knepley 56781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionNumDS()`, `DMGetDS()`, `DMGetCellDS()` 5679083401c6SMatthew G. Knepley @*/ 568007218a29SMatthew G. Knepley PetscErrorCode DMSetRegionDS(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 5681d71ae5a4SJacob Faibussowitsch { 5682083401c6SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5683083401c6SMatthew G. Knepley 5684083401c6SMatthew G. Knepley PetscFunctionBegin; 5685083401c6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5686083401c6SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 568707218a29SMatthew G. Knepley if (fields) PetscValidHeaderSpecific(fields, IS_CLASSID, 3); 5688064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 4); 568907218a29SMatthew G. Knepley if (dsIn) PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 5); 5690083401c6SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5691083401c6SMatthew G. Knepley if (dm->probs[s].label == label) { 56929566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 569307218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[s].dsIn)); 5694083401c6SMatthew G. Knepley dm->probs[s].ds = ds; 569507218a29SMatthew G. Knepley dm->probs[s].dsIn = dsIn; 56963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5697083401c6SMatthew G. Knepley } 5698083401c6SMatthew G. Knepley } 56999566063dSJacob Faibussowitsch PetscCall(DMDSEnlarge_Static(dm, Nds + 1)); 57009566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 57019566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 57029566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 570307218a29SMatthew G. Knepley PetscCall(PetscObjectReference((PetscObject)dsIn)); 5704083401c6SMatthew G. Knepley if (!label) { 5705083401c6SMatthew G. Knepley /* Put the NULL label at the front, so it is returned as the default */ 5706083401c6SMatthew G. Knepley for (s = Nds - 1; s >= 0; --s) dm->probs[s + 1] = dm->probs[s]; 5707083401c6SMatthew G. Knepley Nds = 0; 5708083401c6SMatthew G. Knepley } 5709083401c6SMatthew G. Knepley dm->probs[Nds].label = label; 5710083401c6SMatthew G. Knepley dm->probs[Nds].fields = fields; 5711083401c6SMatthew G. Knepley dm->probs[Nds].ds = ds; 571207218a29SMatthew G. Knepley dm->probs[Nds].dsIn = dsIn; 57133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5714083401c6SMatthew G. Knepley } 5715083401c6SMatthew G. Knepley 5716083401c6SMatthew G. Knepley /*@ 571720f4b53cSBarry Smith DMGetRegionNumDS - Get the `PetscDS` for a given mesh region, defined by the region number 5718e5e52638SMatthew G. Knepley 571920f4b53cSBarry Smith Not Collective 5720e5e52638SMatthew G. Knepley 5721e5e52638SMatthew G. Knepley Input Parameters: 572220f4b53cSBarry Smith + dm - The `DM` 5723e5e52638SMatthew G. Knepley - num - The region number, in [0, Nds) 5724e5e52638SMatthew G. Knepley 5725e5e52638SMatthew G. Knepley Output Parameters: 572620f4b53cSBarry Smith + label - The region label, or `NULL` 572720f4b53cSBarry Smith . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` 572807218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` 572907218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input in the given region, or `NULL` 5730e5e52638SMatthew G. Knepley 5731e5e52638SMatthew G. Knepley Level: advanced 5732e5e52638SMatthew G. Knepley 57331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5734e5e52638SMatthew G. Knepley @*/ 573507218a29SMatthew G. Knepley PetscErrorCode DMGetRegionNumDS(DM dm, PetscInt num, DMLabel *label, IS *fields, PetscDS *ds, PetscDS *dsIn) 5736d71ae5a4SJacob Faibussowitsch { 5737e5e52638SMatthew G. Knepley PetscInt Nds; 5738e5e52638SMatthew G. Knepley 5739e5e52638SMatthew G. Knepley PetscFunctionBegin; 5740e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 57419566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 574263a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 5743e5e52638SMatthew G. Knepley if (label) { 57444f572ea9SToby Isaac PetscAssertPointer(label, 3); 5745e5e52638SMatthew G. Knepley *label = dm->probs[num].label; 5746e5e52638SMatthew G. Knepley } 5747b3cf3223SMatthew G. Knepley if (fields) { 57484f572ea9SToby Isaac PetscAssertPointer(fields, 4); 5749b3cf3223SMatthew G. Knepley *fields = dm->probs[num].fields; 5750b3cf3223SMatthew G. Knepley } 5751e5e52638SMatthew G. Knepley if (ds) { 57524f572ea9SToby Isaac PetscAssertPointer(ds, 5); 5753e5e52638SMatthew G. Knepley *ds = dm->probs[num].ds; 5754e5e52638SMatthew G. Knepley } 575507218a29SMatthew G. Knepley if (dsIn) { 57564f572ea9SToby Isaac PetscAssertPointer(dsIn, 6); 575707218a29SMatthew G. Knepley *dsIn = dm->probs[num].dsIn; 575807218a29SMatthew G. Knepley } 57593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5760e5e52638SMatthew G. Knepley } 5761e5e52638SMatthew G. Knepley 5762e5e52638SMatthew G. Knepley /*@ 576320f4b53cSBarry Smith DMSetRegionNumDS - Set the `PetscDS` for a given mesh region, defined by the region number 5764e5e52638SMatthew G. Knepley 576520f4b53cSBarry Smith Not Collective 5766e5e52638SMatthew G. Knepley 5767e5e52638SMatthew G. Knepley Input Parameters: 576820f4b53cSBarry Smith + dm - The `DM` 5769083401c6SMatthew G. Knepley . num - The region number, in [0, Nds) 577020f4b53cSBarry Smith . label - The region label, or `NULL` 577107218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` to prevent setting 577207218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` to prevent setting 577307218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS` 5774e5e52638SMatthew G. Knepley 5775e5e52638SMatthew G. Knepley Level: advanced 5776e5e52638SMatthew G. Knepley 57771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5778e5e52638SMatthew G. Knepley @*/ 577907218a29SMatthew G. Knepley PetscErrorCode DMSetRegionNumDS(DM dm, PetscInt num, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 5780d71ae5a4SJacob Faibussowitsch { 5781083401c6SMatthew G. Knepley PetscInt Nds; 5782e5e52638SMatthew G. Knepley 5783e5e52638SMatthew G. Knepley PetscFunctionBegin; 5784e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5785ad540459SPierre Jolivet if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 57869566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 578763a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 57889566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 57899566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[num].label)); 5790083401c6SMatthew G. Knepley dm->probs[num].label = label; 5791083401c6SMatthew G. Knepley if (fields) { 5792083401c6SMatthew G. Knepley PetscValidHeaderSpecific(fields, IS_CLASSID, 4); 57939566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 57949566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[num].fields)); 5795083401c6SMatthew G. Knepley dm->probs[num].fields = fields; 5796e5e52638SMatthew G. Knepley } 5797083401c6SMatthew G. Knepley if (ds) { 5798083401c6SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 5); 57999566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 58009566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[num].ds)); 5801083401c6SMatthew G. Knepley dm->probs[num].ds = ds; 5802083401c6SMatthew G. Knepley } 580307218a29SMatthew G. Knepley if (dsIn) { 580407218a29SMatthew G. Knepley PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 6); 580507218a29SMatthew G. Knepley PetscCall(PetscObjectReference((PetscObject)dsIn)); 580607218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[num].dsIn)); 580707218a29SMatthew G. Knepley dm->probs[num].dsIn = dsIn; 580807218a29SMatthew G. Knepley } 58093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5810e5e52638SMatthew G. Knepley } 5811e5e52638SMatthew G. Knepley 5812e5e52638SMatthew G. Knepley /*@ 581320f4b53cSBarry Smith DMFindRegionNum - Find the region number for a given `PetscDS`, or -1 if it is not found. 58141d3af9e0SMatthew G. Knepley 581520f4b53cSBarry Smith Not Collective 58161d3af9e0SMatthew G. Knepley 58171d3af9e0SMatthew G. Knepley Input Parameters: 581820f4b53cSBarry Smith + dm - The `DM` 581920f4b53cSBarry Smith - ds - The `PetscDS` defined on the given region 58201d3af9e0SMatthew G. Knepley 58211d3af9e0SMatthew G. Knepley Output Parameter: 58221d3af9e0SMatthew G. Knepley . num - The region number, in [0, Nds), or -1 if not found 58231d3af9e0SMatthew G. Knepley 58241d3af9e0SMatthew G. Knepley Level: advanced 58251d3af9e0SMatthew G. Knepley 58261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 58271d3af9e0SMatthew G. Knepley @*/ 5828d71ae5a4SJacob Faibussowitsch PetscErrorCode DMFindRegionNum(DM dm, PetscDS ds, PetscInt *num) 5829d71ae5a4SJacob Faibussowitsch { 58301d3af9e0SMatthew G. Knepley PetscInt Nds, n; 58311d3af9e0SMatthew G. Knepley 58321d3af9e0SMatthew G. Knepley PetscFunctionBegin; 58331d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 58341d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 2); 58354f572ea9SToby Isaac PetscAssertPointer(num, 3); 58369566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 58379371c9d4SSatish Balay for (n = 0; n < Nds; ++n) 58389371c9d4SSatish Balay if (ds == dm->probs[n].ds) break; 58391d3af9e0SMatthew G. Knepley if (n >= Nds) *num = -1; 58401d3af9e0SMatthew G. Knepley else *num = n; 58413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58421d3af9e0SMatthew G. Knepley } 58431d3af9e0SMatthew G. Knepley 5844cc4c1da9SBarry Smith /*@ 5845bb7acecfSBarry Smith DMCreateFEDefault - Create a `PetscFE` based on the celltype for the mesh 58462df84da0SMatthew G. Knepley 584720f4b53cSBarry Smith Not Collective 58482df84da0SMatthew G. Knepley 5849f1a722f8SMatthew G. Knepley Input Parameters: 5850bb7acecfSBarry Smith + dm - The `DM` 58512df84da0SMatthew G. Knepley . Nc - The number of components for the field 585220f4b53cSBarry Smith . prefix - The options prefix for the output `PetscFE`, or `NULL` 5853bb7acecfSBarry Smith - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree 58542df84da0SMatthew G. Knepley 58552df84da0SMatthew G. Knepley Output Parameter: 5856bb7acecfSBarry Smith . fem - The `PetscFE` 58572df84da0SMatthew G. Knepley 585820f4b53cSBarry Smith Level: intermediate 585920f4b53cSBarry Smith 5860bb7acecfSBarry Smith Note: 5861bb7acecfSBarry Smith This is a convenience method that just calls `PetscFECreateByCell()` underneath. 58622df84da0SMatthew G. Knepley 58631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscFECreateByCell()`, `DMAddField()`, `DMCreateDS()`, `DMGetCellDS()`, `DMGetRegionDS()` 58642df84da0SMatthew G. Knepley @*/ 5865d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFEDefault(DM dm, PetscInt Nc, const char prefix[], PetscInt qorder, PetscFE *fem) 5866d71ae5a4SJacob Faibussowitsch { 58672df84da0SMatthew G. Knepley DMPolytopeType ct; 58682df84da0SMatthew G. Knepley PetscInt dim, cStart; 58692df84da0SMatthew G. Knepley 58702df84da0SMatthew G. Knepley PetscFunctionBegin; 58712df84da0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 58722df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 2); 58734f572ea9SToby Isaac if (prefix) PetscAssertPointer(prefix, 3); 58742df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, qorder, 4); 58754f572ea9SToby Isaac PetscAssertPointer(fem, 5); 58769566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 58779566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 58789566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 58799566063dSJacob Faibussowitsch PetscCall(PetscFECreateByCell(PETSC_COMM_SELF, dim, Nc, ct, prefix, qorder, fem)); 58803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58812df84da0SMatthew G. Knepley } 58822df84da0SMatthew G. Knepley 58831d3af9e0SMatthew G. Knepley /*@ 5884bb7acecfSBarry Smith DMCreateDS - Create the discrete systems for the `DM` based upon the fields added to the `DM` 5885e5e52638SMatthew G. Knepley 588620f4b53cSBarry Smith Collective 5887e5e52638SMatthew G. Knepley 5888e5e52638SMatthew G. Knepley Input Parameter: 5889bb7acecfSBarry Smith . dm - The `DM` 5890e5e52638SMatthew G. Knepley 589120f4b53cSBarry Smith Options Database Key: 5892bb7acecfSBarry Smith . -dm_petscds_view - View all the `PetscDS` objects in this `DM` 589345480ffeSMatthew G. Knepley 589420f4b53cSBarry Smith Level: intermediate 589520f4b53cSBarry Smith 5896ce78bad3SBarry Smith Developer Note: 5897ce78bad3SBarry Smith The name of this function is wrong. Create functions always return the created object as one of the arguments. 5898ce78bad3SBarry Smith 58991cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetField`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 5900e5e52638SMatthew G. Knepley @*/ 5901d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDS(DM dm) 5902d71ae5a4SJacob Faibussowitsch { 5903e5e52638SMatthew G. Knepley MPI_Comm comm; 5904083401c6SMatthew G. Knepley PetscDS dsDef; 5905083401c6SMatthew G. Knepley DMLabel *labelSet; 5906f9244615SMatthew G. Knepley PetscInt dE, Nf = dm->Nf, f, s, Nl, l, Ndef, k; 5907f9244615SMatthew G. Knepley PetscBool doSetup = PETSC_TRUE, flg; 5908e5e52638SMatthew G. Knepley 5909e5e52638SMatthew G. Knepley PetscFunctionBegin; 5910e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 59113ba16761SJacob Faibussowitsch if (!dm->fields) PetscFunctionReturn(PETSC_SUCCESS); 59129566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 59139566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dE)); 5914083401c6SMatthew G. Knepley /* Determine how many regions we have */ 59159566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nf, &labelSet)); 5916083401c6SMatthew G. Knepley Nl = 0; 5917083401c6SMatthew G. Knepley Ndef = 0; 5918083401c6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5919083401c6SMatthew G. Knepley DMLabel label = dm->fields[f].label; 5920083401c6SMatthew G. Knepley PetscInt l; 5921083401c6SMatthew G. Knepley 5922f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 5923f918ec44SMatthew G. Knepley /* Move CEED context to discretizations */ 5924f918ec44SMatthew G. Knepley { 5925f918ec44SMatthew G. Knepley PetscClassId id; 5926f918ec44SMatthew G. Knepley 59279566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(dm->fields[f].disc, &id)); 5928f918ec44SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 5929f918ec44SMatthew G. Knepley Ceed ceed; 5930f918ec44SMatthew G. Knepley 59319566063dSJacob Faibussowitsch PetscCall(DMGetCeed(dm, &ceed)); 59329566063dSJacob Faibussowitsch PetscCall(PetscFESetCeed((PetscFE)dm->fields[f].disc, ceed)); 5933f918ec44SMatthew G. Knepley } 5934f918ec44SMatthew G. Knepley } 5935f918ec44SMatthew G. Knepley #endif 59369371c9d4SSatish Balay if (!label) { 59379371c9d4SSatish Balay ++Ndef; 59389371c9d4SSatish Balay continue; 59399371c9d4SSatish Balay } 59409371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 59419371c9d4SSatish Balay if (label == labelSet[l]) break; 5942083401c6SMatthew G. Knepley if (l < Nl) continue; 5943083401c6SMatthew G. Knepley labelSet[Nl++] = label; 5944083401c6SMatthew G. Knepley } 5945083401c6SMatthew G. Knepley /* Create default DS if there are no labels to intersect with */ 594607218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL)); 5947083401c6SMatthew G. Knepley if (!dsDef && Ndef && !Nl) { 5948b3cf3223SMatthew G. Knepley IS fields; 5949b3cf3223SMatthew G. Knepley PetscInt *fld, nf; 5950b3cf3223SMatthew G. Knepley 59519371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59529371c9d4SSatish Balay if (!dm->fields[f].label) ++nf; 59537a8be351SBarry Smith PetscCheck(nf, comm, PETSC_ERR_PLIB, "All fields have labels, but we are trying to create a default DS"); 59549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 59559371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59569371c9d4SSatish Balay if (!dm->fields[f].label) fld[nf++] = f; 59579566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 59589566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 59599566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 59609566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 596188f0c812SMatthew G. Knepley 59629566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 596307218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, NULL, fields, dsDef, NULL)); 59649566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 59659566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fields)); 59662df9ee95SMatthew G. Knepley } 596707218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL)); 59689566063dSJacob Faibussowitsch if (dsDef) PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 5969083401c6SMatthew G. Knepley /* Intersect labels with default fields */ 5970083401c6SMatthew G. Knepley if (Ndef && Nl) { 59710122748bSMatthew G. Knepley DM plex; 5972083401c6SMatthew G. Knepley DMLabel cellLabel; 5973083401c6SMatthew G. Knepley IS fieldIS, allcellIS, defcellIS = NULL; 5974083401c6SMatthew G. Knepley PetscInt *fields; 5975083401c6SMatthew G. Knepley const PetscInt *cells; 5976083401c6SMatthew G. Knepley PetscInt depth, nf = 0, n, c; 59770122748bSMatthew G. Knepley 59789566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 59799566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(plex, &depth)); 59809566063dSJacob Faibussowitsch PetscCall(DMGetStratumIS(plex, "dim", depth, &allcellIS)); 59819566063dSJacob Faibussowitsch if (!allcellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &allcellIS)); 59825fedec97SMatthew G. Knepley /* TODO This looks like it only works for one label */ 5983083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 5984083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 5985083401c6SMatthew G. Knepley IS pointIS; 5986083401c6SMatthew G. Knepley 59879566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 59889566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, 1, &pointIS)); 59899566063dSJacob Faibussowitsch PetscCall(ISDifference(allcellIS, pointIS, &defcellIS)); 59909566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 5991083401c6SMatthew G. Knepley } 59929566063dSJacob Faibussowitsch PetscCall(ISDestroy(&allcellIS)); 5993083401c6SMatthew G. Knepley 59949566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "defaultCells", &cellLabel)); 59959566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(defcellIS, &n)); 59969566063dSJacob Faibussowitsch PetscCall(ISGetIndices(defcellIS, &cells)); 59979566063dSJacob Faibussowitsch for (c = 0; c < n; ++c) PetscCall(DMLabelSetValue(cellLabel, cells[c], 1)); 59989566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(defcellIS, &cells)); 59999566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 60009566063dSJacob Faibussowitsch PetscCall(DMPlexLabelComplete(plex, cellLabel)); 6001083401c6SMatthew G. Knepley 60029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ndef, &fields)); 60039371c9d4SSatish Balay for (f = 0; f < Nf; ++f) 60049371c9d4SSatish Balay if (!dm->fields[f].label) fields[nf++] = f; 60059566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fieldIS)); 60069566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fieldIS, "dm_fields_")); 60079566063dSJacob Faibussowitsch PetscCall(ISSetType(fieldIS, ISGENERAL)); 60089566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fieldIS, nf, fields, PETSC_OWN_POINTER)); 6009083401c6SMatthew G. Knepley 60109566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 601107218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, cellLabel, fieldIS, dsDef, NULL)); 60129566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 60139566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&cellLabel)); 60149566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 60159566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fieldIS)); 60169566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 6017083401c6SMatthew G. Knepley } 6018083401c6SMatthew G. Knepley /* Create label DSes 6019083401c6SMatthew G. Knepley - WE ONLY SUPPORT IDENTICAL OR DISJOINT LABELS 6020083401c6SMatthew G. Knepley */ 6021083401c6SMatthew G. Knepley /* TODO Should check that labels are disjoint */ 6022083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 6023083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 602407218a29SMatthew G. Knepley PetscDS ds, dsIn = NULL; 6025083401c6SMatthew G. Knepley IS fields; 6026083401c6SMatthew G. Knepley PetscInt *fld, nf; 6027083401c6SMatthew G. Knepley 60289566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 60299371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 60309371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) ++nf; 60319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 60329371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 60339371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) fld[nf++] = f; 60349566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 60359566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 60369566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 60379566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 60389566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(ds, dE)); 6039083401c6SMatthew G. Knepley { 6040083401c6SMatthew G. Knepley DMPolytopeType ct; 6041083401c6SMatthew G. Knepley PetscInt lStart, lEnd; 60425fedec97SMatthew G. Knepley PetscBool isCohesiveLocal = PETSC_FALSE, isCohesive; 60430122748bSMatthew G. Knepley 60449566063dSJacob Faibussowitsch PetscCall(DMLabelGetBounds(label, &lStart, &lEnd)); 6045665f567fSMatthew G. Knepley if (lStart >= 0) { 60469566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, lStart, &ct)); 6047412e9a14SMatthew G. Knepley switch (ct) { 6048412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 6049412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 6050412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 6051d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_QUAD_PRISM_TENSOR: 6052d71ae5a4SJacob Faibussowitsch isCohesiveLocal = PETSC_TRUE; 6053d71ae5a4SJacob Faibussowitsch break; 6054d71ae5a4SJacob Faibussowitsch default: 6055d71ae5a4SJacob Faibussowitsch break; 6056412e9a14SMatthew G. Knepley } 6057665f567fSMatthew G. Knepley } 6058462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&isCohesiveLocal, &isCohesive, 1, MPIU_BOOL, MPI_LOR, comm)); 605907218a29SMatthew G. Knepley if (isCohesive) { 606007218a29SMatthew G. Knepley PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsIn)); 606107218a29SMatthew G. Knepley PetscCall(PetscDSSetCoordinateDimension(dsIn, dE)); 606207218a29SMatthew G. Knepley } 60635fedec97SMatthew G. Knepley for (f = 0, nf = 0; f < Nf; ++f) { 60645fedec97SMatthew G. Knepley if (label == dm->fields[f].label || !dm->fields[f].label) { 60655fedec97SMatthew G. Knepley if (label == dm->fields[f].label) { 60669566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, nf, NULL)); 60679566063dSJacob Faibussowitsch PetscCall(PetscDSSetCohesive(ds, nf, isCohesive)); 606807218a29SMatthew G. Knepley if (dsIn) { 606907218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, nf, NULL)); 607007218a29SMatthew G. Knepley PetscCall(PetscDSSetCohesive(dsIn, nf, isCohesive)); 607107218a29SMatthew G. Knepley } 60725fedec97SMatthew G. Knepley } 60735fedec97SMatthew G. Knepley ++nf; 60745fedec97SMatthew G. Knepley } 60755fedec97SMatthew G. Knepley } 6076e5e52638SMatthew G. Knepley } 607707218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, label, fields, ds, dsIn)); 607807218a29SMatthew G. Knepley PetscCall(ISDestroy(&fields)); 60799566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 608007218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dsIn)); 6081e5e52638SMatthew G. Knepley } 60829566063dSJacob Faibussowitsch PetscCall(PetscFree(labelSet)); 6083e5e52638SMatthew G. Knepley /* Set fields in DSes */ 6084083401c6SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 6085083401c6SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 608607218a29SMatthew G. Knepley PetscDS dsIn = dm->probs[s].dsIn; 6087083401c6SMatthew G. Knepley IS fields = dm->probs[s].fields; 6088083401c6SMatthew G. Knepley const PetscInt *fld; 60895fedec97SMatthew G. Knepley PetscInt nf, dsnf; 60905fedec97SMatthew G. Knepley PetscBool isCohesive; 6091e5e52638SMatthew G. Knepley 60929566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsnf)); 60939566063dSJacob Faibussowitsch PetscCall(PetscDSIsCohesive(ds, &isCohesive)); 60949566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(fields, &nf)); 60959566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fields, &fld)); 6096083401c6SMatthew G. Knepley for (f = 0; f < nf; ++f) { 6097083401c6SMatthew G. Knepley PetscObject disc = dm->fields[fld[f]].disc; 60985fedec97SMatthew G. Knepley PetscBool isCohesiveField; 6099e5e52638SMatthew G. Knepley PetscClassId id; 6100e5e52638SMatthew G. Knepley 61015fedec97SMatthew G. Knepley /* Handle DS with no fields */ 61029566063dSJacob Faibussowitsch if (dsnf) PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField)); 61035fedec97SMatthew G. Knepley /* If this is a cohesive cell, then regular fields need the lower dimensional discretization */ 610407218a29SMatthew G. Knepley if (isCohesive) { 610507218a29SMatthew G. Knepley if (!isCohesiveField) { 610607218a29SMatthew G. Knepley PetscObject bdDisc; 610707218a29SMatthew G. Knepley 610807218a29SMatthew G. Knepley PetscCall(PetscFEGetHeightSubspace((PetscFE)disc, 1, (PetscFE *)&bdDisc)); 610907218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(ds, f, bdDisc)); 611007218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, f, disc)); 611107218a29SMatthew G. Knepley } else { 61129566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, f, disc)); 611307218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, f, disc)); 611407218a29SMatthew G. Knepley } 611507218a29SMatthew G. Knepley } else { 611607218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(ds, f, disc)); 611707218a29SMatthew G. Knepley } 6118083401c6SMatthew G. Knepley /* We allow people to have placeholder fields and construct the Section by hand */ 61199566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 6120e5e52638SMatthew G. Knepley if ((id != PETSCFE_CLASSID) && (id != PETSCFV_CLASSID)) doSetup = PETSC_FALSE; 6121e5e52638SMatthew G. Knepley } 61229566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fields, &fld)); 6123e5e52638SMatthew G. Knepley } 6124f9244615SMatthew G. Knepley /* Allow k-jet tabulation */ 61259566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)dm)->prefix, "-dm_ds_jet_degree", &k, &flg)); 6126f9244615SMatthew G. Knepley if (flg) { 61273b4aee56SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 61283b4aee56SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 612907218a29SMatthew G. Knepley PetscDS dsIn = dm->probs[s].dsIn; 61303b4aee56SMatthew G. Knepley PetscInt Nf, f; 61313b4aee56SMatthew G. Knepley 61329566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 613307218a29SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 613407218a29SMatthew G. Knepley PetscCall(PetscDSSetJetDegree(ds, f, k)); 613507218a29SMatthew G. Knepley if (dsIn) PetscCall(PetscDSSetJetDegree(dsIn, f, k)); 613607218a29SMatthew G. Knepley } 61373b4aee56SMatthew G. Knepley } 6138f9244615SMatthew G. Knepley } 6139e5e52638SMatthew G. Knepley /* Setup DSes */ 6140e5e52638SMatthew G. Knepley if (doSetup) { 614107218a29SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 6142cf1363e4SMatthew G. Knepley if (dm->setfromoptionscalled) { 6143cf1363e4SMatthew G. Knepley PetscCall(PetscDSSetFromOptions(dm->probs[s].ds)); 6144cf1363e4SMatthew G. Knepley if (dm->probs[s].dsIn) PetscCall(PetscDSSetFromOptions(dm->probs[s].dsIn)); 6145cf1363e4SMatthew G. Knepley } 614607218a29SMatthew G. Knepley PetscCall(PetscDSSetUp(dm->probs[s].ds)); 614707218a29SMatthew G. Knepley if (dm->probs[s].dsIn) PetscCall(PetscDSSetUp(dm->probs[s].dsIn)); 614807218a29SMatthew G. Knepley } 6149e5e52638SMatthew G. Knepley } 61503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6151e5e52638SMatthew G. Knepley } 6152e5e52638SMatthew G. Knepley 6153e5e52638SMatthew G. Knepley /*@ 6154d2b2dc1eSMatthew G. Knepley DMUseTensorOrder - Use a tensor product closure ordering for the default section 6155d2b2dc1eSMatthew G. Knepley 6156d2b2dc1eSMatthew G. Knepley Input Parameters: 6157d2b2dc1eSMatthew G. Knepley + dm - The DM 6158d2b2dc1eSMatthew G. Knepley - tensor - Flag for tensor order 6159d2b2dc1eSMatthew G. Knepley 6160d2b2dc1eSMatthew G. Knepley Level: developer 6161d2b2dc1eSMatthew G. Knepley 6162d2b2dc1eSMatthew G. Knepley .seealso: `DMPlexSetClosurePermutationTensor()`, `PetscSectionResetClosurePermutation()` 6163d2b2dc1eSMatthew G. Knepley @*/ 6164d2b2dc1eSMatthew G. Knepley PetscErrorCode DMUseTensorOrder(DM dm, PetscBool tensor) 6165d2b2dc1eSMatthew G. Knepley { 6166d2b2dc1eSMatthew G. Knepley PetscInt Nf; 6167d2b2dc1eSMatthew G. Knepley PetscBool reorder = PETSC_TRUE, isPlex; 6168d2b2dc1eSMatthew G. Knepley 6169d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 6170d2b2dc1eSMatthew G. Knepley PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 6171d2b2dc1eSMatthew G. Knepley PetscCall(DMGetNumFields(dm, &Nf)); 6172d2b2dc1eSMatthew G. Knepley for (PetscInt f = 0; f < Nf; ++f) { 6173d2b2dc1eSMatthew G. Knepley PetscObject obj; 6174d2b2dc1eSMatthew G. Knepley PetscClassId id; 6175d2b2dc1eSMatthew G. Knepley 6176d2b2dc1eSMatthew G. Knepley PetscCall(DMGetField(dm, f, NULL, &obj)); 6177d2b2dc1eSMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 6178d2b2dc1eSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 6179d2b2dc1eSMatthew G. Knepley PetscSpace sp; 6180d2b2dc1eSMatthew G. Knepley PetscBool tensor; 6181d2b2dc1eSMatthew G. Knepley 6182d2b2dc1eSMatthew G. Knepley PetscCall(PetscFEGetBasisSpace((PetscFE)obj, &sp)); 6183d2b2dc1eSMatthew G. Knepley PetscCall(PetscSpacePolynomialGetTensor(sp, &tensor)); 6184d2b2dc1eSMatthew G. Knepley reorder = reorder && tensor ? PETSC_TRUE : PETSC_FALSE; 6185d2b2dc1eSMatthew G. Knepley } else reorder = PETSC_FALSE; 6186d2b2dc1eSMatthew G. Knepley } 6187d2b2dc1eSMatthew G. Knepley if (tensor) { 6188d2b2dc1eSMatthew G. Knepley if (reorder && isPlex) PetscCall(DMPlexSetClosurePermutationTensor(dm, PETSC_DETERMINE, NULL)); 6189d2b2dc1eSMatthew G. Knepley } else { 6190d2b2dc1eSMatthew G. Knepley PetscSection s; 6191d2b2dc1eSMatthew G. Knepley 6192d2b2dc1eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm, &s)); 6193d2b2dc1eSMatthew G. Knepley if (s) PetscCall(PetscSectionResetClosurePermutation(s)); 6194d2b2dc1eSMatthew G. Knepley } 6195d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 6196d2b2dc1eSMatthew G. Knepley } 6197d2b2dc1eSMatthew G. Knepley 6198d2b2dc1eSMatthew G. Knepley /*@ 6199bb7acecfSBarry Smith DMComputeExactSolution - Compute the exact solution for a given `DM`, using the `PetscDS` information. 62007f96f943SMatthew G. Knepley 620120f4b53cSBarry Smith Collective 6202f2cacb80SMatthew G. Knepley 62037f96f943SMatthew G. Knepley Input Parameters: 6204bb7acecfSBarry Smith + dm - The `DM` 62057f96f943SMatthew G. Knepley - time - The time 62067f96f943SMatthew G. Knepley 62077f96f943SMatthew G. Knepley Output Parameters: 620820f4b53cSBarry Smith + u - The vector will be filled with exact solution values, or `NULL` 620920f4b53cSBarry Smith - u_t - The vector will be filled with the time derivative of exact solution values, or `NULL` 621020f4b53cSBarry Smith 621120f4b53cSBarry Smith Level: developer 62127f96f943SMatthew G. Knepley 6213bb7acecfSBarry Smith Note: 6214bb7acecfSBarry Smith The user must call `PetscDSSetExactSolution()` before using this routine 62157f96f943SMatthew G. Knepley 62161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscDSSetExactSolution()` 62177f96f943SMatthew G. Knepley @*/ 6218d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeExactSolution(DM dm, PetscReal time, Vec u, Vec u_t) 6219d71ae5a4SJacob Faibussowitsch { 62207f96f943SMatthew G. Knepley PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 62217f96f943SMatthew G. Knepley void **ectxs; 6222f60fa741SMatthew G. Knepley Vec locu, locu_t; 62237f96f943SMatthew G. Knepley PetscInt Nf, Nds, s; 62247f96f943SMatthew G. Knepley 62257f96f943SMatthew G. Knepley PetscFunctionBegin; 6226f2cacb80SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6227f60fa741SMatthew G. Knepley if (u) { 6228f60fa741SMatthew G. Knepley PetscValidHeaderSpecific(u, VEC_CLASSID, 3); 6229f60fa741SMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &locu)); 6230f60fa741SMatthew G. Knepley PetscCall(VecSet(locu, 0.)); 6231f60fa741SMatthew G. Knepley } 6232f60fa741SMatthew G. Knepley if (u_t) { 6233f60fa741SMatthew G. Knepley PetscValidHeaderSpecific(u_t, VEC_CLASSID, 4); 6234f60fa741SMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &locu_t)); 6235f60fa741SMatthew G. Knepley PetscCall(VecSet(locu_t, 0.)); 6236f60fa741SMatthew G. Knepley } 62379566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 62389566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(Nf, &exacts, Nf, &ectxs)); 62399566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 62407f96f943SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 62417f96f943SMatthew G. Knepley PetscDS ds; 62427f96f943SMatthew G. Knepley DMLabel label; 62437f96f943SMatthew G. Knepley IS fieldIS; 62447f96f943SMatthew G. Knepley const PetscInt *fields, id = 1; 62457f96f943SMatthew G. Knepley PetscInt dsNf, f; 62467f96f943SMatthew G. Knepley 624707218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 62489566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 62499566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fieldIS, &fields)); 62509566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 62519566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6252f2cacb80SMatthew G. Knepley if (u) { 6253f60fa741SMatthew G. Knepley for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolution(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]])); 6254f60fa741SMatthew G. Knepley if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu)); 6255f60fa741SMatthew G. Knepley else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu)); 62567f96f943SMatthew G. Knepley } 6257f2cacb80SMatthew G. Knepley if (u_t) { 62589566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 62599566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6260f60fa741SMatthew G. Knepley for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolutionTimeDerivative(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]])); 6261f60fa741SMatthew G. Knepley if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu_t)); 6262f60fa741SMatthew G. Knepley else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu_t)); 6263f2cacb80SMatthew G. Knepley } 62649566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fieldIS, &fields)); 6265f2cacb80SMatthew G. Knepley } 6266f2cacb80SMatthew G. Knepley if (u) { 62679566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution")); 62689566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u, "exact_")); 6269f2cacb80SMatthew G. Knepley } 6270f2cacb80SMatthew G. Knepley if (u_t) { 62719566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution Time Derivative")); 62729566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u_t, "exact_t_")); 6273f2cacb80SMatthew G. Knepley } 62749566063dSJacob Faibussowitsch PetscCall(PetscFree2(exacts, ectxs)); 6275f60fa741SMatthew G. Knepley if (u) { 6276f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, locu, INSERT_ALL_VALUES, u)); 6277f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, locu, INSERT_ALL_VALUES, u)); 6278f60fa741SMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &locu)); 6279f60fa741SMatthew G. Knepley } 6280f60fa741SMatthew G. Knepley if (u_t) { 6281f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, locu_t, INSERT_ALL_VALUES, u_t)); 6282f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, locu_t, INSERT_ALL_VALUES, u_t)); 6283f60fa741SMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &locu_t)); 6284f60fa741SMatthew G. Knepley } 62853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 62867f96f943SMatthew G. Knepley } 62877f96f943SMatthew G. Knepley 6288bb4b53efSMatthew G. Knepley static PetscErrorCode DMTransferDS_Internal(DM dm, DMLabel label, IS fields, PetscInt minDegree, PetscInt maxDegree, PetscDS ds, PetscDS dsIn) 6289d71ae5a4SJacob Faibussowitsch { 629007218a29SMatthew G. Knepley PetscDS dsNew, dsInNew = NULL; 629145480ffeSMatthew G. Knepley 629245480ffeSMatthew G. Knepley PetscFunctionBegin; 62939566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)ds), &dsNew)); 6294bb4b53efSMatthew G. Knepley PetscCall(PetscDSCopy(ds, minDegree, maxDegree, dm, dsNew)); 629507218a29SMatthew G. Knepley if (dsIn) { 629607218a29SMatthew G. Knepley PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)dsIn), &dsInNew)); 6297bb4b53efSMatthew G. Knepley PetscCall(PetscDSCopy(dsIn, minDegree, maxDegree, dm, dsInNew)); 629845480ffeSMatthew G. Knepley } 629907218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, label, fields, dsNew, dsInNew)); 63009566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsNew)); 630107218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dsInNew)); 63023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 630345480ffeSMatthew G. Knepley } 630445480ffeSMatthew G. Knepley 63057f96f943SMatthew G. Knepley /*@ 6306bb7acecfSBarry Smith DMCopyDS - Copy the discrete systems for the `DM` into another `DM` 6307e5e52638SMatthew G. Knepley 630820f4b53cSBarry Smith Collective 6309e5e52638SMatthew G. Knepley 6310bb4b53efSMatthew G. Knepley Input Parameters: 6311bb4b53efSMatthew G. Knepley + dm - The `DM` 6312bb4b53efSMatthew G. Knepley . minDegree - Minimum degree for a discretization, or `PETSC_DETERMINE` for no limit 6313bb4b53efSMatthew G. Knepley - maxDegree - Maximum degree for a discretization, or `PETSC_DETERMINE` for no limit 6314e5e52638SMatthew G. Knepley 6315e5e52638SMatthew G. Knepley Output Parameter: 6316bb7acecfSBarry Smith . newdm - The `DM` 6317e5e52638SMatthew G. Knepley 6318e5e52638SMatthew G. Knepley Level: advanced 6319e5e52638SMatthew G. Knepley 63201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 6321e5e52638SMatthew G. Knepley @*/ 6322bb4b53efSMatthew G. Knepley PetscErrorCode DMCopyDS(DM dm, PetscInt minDegree, PetscInt maxDegree, DM newdm) 6323d71ae5a4SJacob Faibussowitsch { 6324e5e52638SMatthew G. Knepley PetscInt Nds, s; 6325e5e52638SMatthew G. Knepley 6326e5e52638SMatthew G. Knepley PetscFunctionBegin; 63273ba16761SJacob Faibussowitsch if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS); 63289566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 63299566063dSJacob Faibussowitsch PetscCall(DMClearDS(newdm)); 6330e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 6331e5e52638SMatthew G. Knepley DMLabel label; 6332b3cf3223SMatthew G. Knepley IS fields; 633307218a29SMatthew G. Knepley PetscDS ds, dsIn, newds; 6334783e2ec8SMatthew G. Knepley PetscInt Nbd, bd; 6335e5e52638SMatthew G. Knepley 633607218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fields, &ds, &dsIn)); 6337b8025e53SMatthew G. Knepley /* TODO: We need to change all keys from labels in the old DM to labels in the new DM */ 6338bb4b53efSMatthew G. Knepley PetscCall(DMTransferDS_Internal(newdm, label, fields, minDegree, maxDegree, ds, dsIn)); 6339d5b43468SJose E. Roman /* Complete new labels in the new DS */ 634007218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(newdm, label, NULL, &newds, NULL)); 63419566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(newds, &Nbd)); 6342783e2ec8SMatthew G. Knepley for (bd = 0; bd < Nbd; ++bd) { 6343b8025e53SMatthew G. Knepley PetscWeakForm wf; 634445480ffeSMatthew G. Knepley DMLabel label; 6345783e2ec8SMatthew G. Knepley PetscInt field; 6346783e2ec8SMatthew G. Knepley 63479566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(newds, bd, &wf, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 63489566063dSJacob Faibussowitsch PetscCall(PetscWeakFormReplaceLabel(wf, label)); 6349783e2ec8SMatthew G. Knepley } 6350e5e52638SMatthew G. Knepley } 6351799db056SMatthew G. Knepley PetscCall(DMCompleteBCLabels_Internal(newdm)); 63523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6353e5e52638SMatthew G. Knepley } 6354e5e52638SMatthew G. Knepley 6355e5e52638SMatthew G. Knepley /*@ 6356bb7acecfSBarry Smith DMCopyDisc - Copy the fields and discrete systems for the `DM` into another `DM` 6357e5e52638SMatthew G. Knepley 635820f4b53cSBarry Smith Collective 6359e5e52638SMatthew G. Knepley 6360e5e52638SMatthew G. Knepley Input Parameter: 6361bb7acecfSBarry Smith . dm - The `DM` 6362e5e52638SMatthew G. Knepley 6363e5e52638SMatthew G. Knepley Output Parameter: 6364bb7acecfSBarry Smith . newdm - The `DM` 6365e5e52638SMatthew G. Knepley 6366e5e52638SMatthew G. Knepley Level: advanced 6367e5e52638SMatthew G. Knepley 636873ff1848SBarry Smith Developer Note: 6369bb7acecfSBarry Smith Really ugly name, nothing in PETSc is called a `Disc` plus it is an ugly abbreviation 6370bb7acecfSBarry Smith 63711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMCopyDS()` 6372e5e52638SMatthew G. Knepley @*/ 6373d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDisc(DM dm, DM newdm) 6374d71ae5a4SJacob Faibussowitsch { 6375e5e52638SMatthew G. Knepley PetscFunctionBegin; 6376bb4b53efSMatthew G. Knepley PetscCall(DMCopyFields(dm, PETSC_DETERMINE, PETSC_DETERMINE, newdm)); 6377bb4b53efSMatthew G. Knepley PetscCall(DMCopyDS(dm, PETSC_DETERMINE, PETSC_DETERMINE, newdm)); 63783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6379e5e52638SMatthew G. Knepley } 6380e5e52638SMatthew G. Knepley 6381c73cfb54SMatthew G. Knepley /*@ 6382bb7acecfSBarry Smith DMGetDimension - Return the topological dimension of the `DM` 6383c73cfb54SMatthew G. Knepley 638420f4b53cSBarry Smith Not Collective 6385c73cfb54SMatthew G. Knepley 6386c73cfb54SMatthew G. Knepley Input Parameter: 6387bb7acecfSBarry Smith . dm - The `DM` 6388c73cfb54SMatthew G. Knepley 6389c73cfb54SMatthew G. Knepley Output Parameter: 6390c73cfb54SMatthew G. Knepley . dim - The topological dimension 6391c73cfb54SMatthew G. Knepley 6392c73cfb54SMatthew G. Knepley Level: beginner 6393c73cfb54SMatthew G. Knepley 63941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDimension()`, `DMCreate()` 6395c73cfb54SMatthew G. Knepley @*/ 6396d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimension(DM dm, PetscInt *dim) 6397d71ae5a4SJacob Faibussowitsch { 6398c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6399c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64004f572ea9SToby Isaac PetscAssertPointer(dim, 2); 6401c73cfb54SMatthew G. Knepley *dim = dm->dim; 64023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6403c73cfb54SMatthew G. Knepley } 6404c73cfb54SMatthew G. Knepley 6405c73cfb54SMatthew G. Knepley /*@ 6406bb7acecfSBarry Smith DMSetDimension - Set the topological dimension of the `DM` 6407c73cfb54SMatthew G. Knepley 640820f4b53cSBarry Smith Collective 6409c73cfb54SMatthew G. Knepley 6410c73cfb54SMatthew G. Knepley Input Parameters: 6411bb7acecfSBarry Smith + dm - The `DM` 6412c73cfb54SMatthew G. Knepley - dim - The topological dimension 6413c73cfb54SMatthew G. Knepley 6414c73cfb54SMatthew G. Knepley Level: beginner 6415c73cfb54SMatthew G. Knepley 64161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDimension()`, `DMCreate()` 6417c73cfb54SMatthew G. Knepley @*/ 6418d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDimension(DM dm, PetscInt dim) 6419d71ae5a4SJacob Faibussowitsch { 6420e5e52638SMatthew G. Knepley PetscDS ds; 642145480ffeSMatthew G. Knepley PetscInt Nds, n; 6422f17e8794SMatthew G. Knepley 6423c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6424c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6425c73cfb54SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, dim, 2); 6426c73cfb54SMatthew G. Knepley dm->dim = dim; 6427d17bd122SMatthew G. Knepley if (dm->dim >= 0) { 64289566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 642945480ffeSMatthew G. Knepley for (n = 0; n < Nds; ++n) { 643007218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, n, NULL, NULL, &ds, NULL)); 64319566063dSJacob Faibussowitsch if (ds->dimEmbed < 0) PetscCall(PetscDSSetCoordinateDimension(ds, dim)); 643245480ffeSMatthew G. Knepley } 6433d17bd122SMatthew G. Knepley } 64343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6435c73cfb54SMatthew G. Knepley } 6436c73cfb54SMatthew G. Knepley 6437793f3fe5SMatthew G. Knepley /*@ 6438793f3fe5SMatthew G. Knepley DMGetDimPoints - Get the half-open interval for all points of a given dimension 6439793f3fe5SMatthew G. Knepley 644020f4b53cSBarry Smith Collective 6441793f3fe5SMatthew G. Knepley 6442793f3fe5SMatthew G. Knepley Input Parameters: 6443bb7acecfSBarry Smith + dm - the `DM` 6444793f3fe5SMatthew G. Knepley - dim - the dimension 6445793f3fe5SMatthew G. Knepley 6446793f3fe5SMatthew G. Knepley Output Parameters: 6447793f3fe5SMatthew G. Knepley + pStart - The first point of the given dimension 6448aa049354SPatrick Sanan - pEnd - The first point following points of the given dimension 6449793f3fe5SMatthew G. Knepley 645020f4b53cSBarry Smith Level: intermediate 645120f4b53cSBarry Smith 6452793f3fe5SMatthew G. Knepley Note: 6453793f3fe5SMatthew G. Knepley The points are vertices in the Hasse diagram encoding the topology. This is explained in 6454a8d69d7bSBarry Smith https://arxiv.org/abs/0908.4427. If no points exist of this dimension in the storage scheme, 6455793f3fe5SMatthew G. Knepley then the interval is empty. 6456793f3fe5SMatthew G. Knepley 64571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPLEX`, `DMPlexGetDepthStratum()`, `DMPlexGetHeightStratum()` 6458793f3fe5SMatthew G. Knepley @*/ 6459d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimPoints(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd) 6460d71ae5a4SJacob Faibussowitsch { 6461793f3fe5SMatthew G. Knepley PetscInt d; 6462793f3fe5SMatthew G. Knepley 6463793f3fe5SMatthew G. Knepley PetscFunctionBegin; 6464793f3fe5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64659566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &d)); 64667a8be351SBarry Smith PetscCheck((dim >= 0) && (dim <= d), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %" PetscInt_FMT, dim); 6467dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getdimpoints, dim, pStart, pEnd); 64683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6469793f3fe5SMatthew G. Knepley } 6470793f3fe5SMatthew G. Knepley 64716636e97aSMatthew G Knepley /*@ 6472bb7acecfSBarry Smith DMGetOutputDM - Retrieve the `DM` associated with the layout for output 6473f4d763aaSMatthew G. Knepley 647420f4b53cSBarry Smith Collective 64758f700142SStefano Zampini 6476f4d763aaSMatthew G. Knepley Input Parameter: 6477bb7acecfSBarry Smith . dm - The original `DM` 6478f4d763aaSMatthew G. Knepley 6479f4d763aaSMatthew G. Knepley Output Parameter: 6480bb7acecfSBarry Smith . odm - The `DM` which provides the layout for output 6481f4d763aaSMatthew G. Knepley 6482f4d763aaSMatthew G. Knepley Level: intermediate 6483f4d763aaSMatthew G. Knepley 6484bb7acecfSBarry Smith Note: 6485bb7acecfSBarry Smith In some situations the vector obtained with `DMCreateGlobalVector()` excludes points for degrees of freedom that are associated with fixed (Dirichelet) boundary 6486bb7acecfSBarry Smith conditions since the algebraic solver does not solve for those variables. The output `DM` includes these excluded points and its global vector contains the 6487bb7acecfSBarry Smith locations for those dof so that they can be output to a file or other viewer along with the unconstrained dof. 6488bb7acecfSBarry Smith 64891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`, `DMGetGlobalSection()`, `DMCreateGlobalVector()`, `PetscSectionHasConstraints()`, `DMSetGlobalSection()` 6490f4d763aaSMatthew G. Knepley @*/ 6491d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputDM(DM dm, DM *odm) 6492d71ae5a4SJacob Faibussowitsch { 6493c26acbdeSMatthew G. Knepley PetscSection section; 6494eb9d3e4dSMatthew G. Knepley IS perm; 6495eb9d3e4dSMatthew G. Knepley PetscBool hasConstraints, newDM, gnewDM; 649692a26154SJames Wright PetscInt num_face_sfs = 0; 649714f150ffSMatthew G. Knepley 649814f150ffSMatthew G. Knepley PetscFunctionBegin; 649914f150ffSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 65004f572ea9SToby Isaac PetscAssertPointer(odm, 2); 65019566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 65029566063dSJacob Faibussowitsch PetscCall(PetscSectionHasConstraints(section, &hasConstraints)); 6503eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionGetPermutation(section, &perm)); 650492a26154SJames Wright PetscCall(DMPlexGetIsoperiodicFaceSF(dm, &num_face_sfs, NULL)); 650592a26154SJames Wright newDM = hasConstraints || perm || (num_face_sfs > 0) ? PETSC_TRUE : PETSC_FALSE; 6506462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&newDM, &gnewDM, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm))); 6507eb9d3e4dSMatthew G. Knepley if (!gnewDM) { 6508c26acbdeSMatthew G. Knepley *odm = dm; 65093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6510c26acbdeSMatthew G. Knepley } 651114f150ffSMatthew G. Knepley if (!dm->dmBC) { 6512c26acbdeSMatthew G. Knepley PetscSection newSection, gsection; 651392a26154SJames Wright PetscSF sf, sfNatural; 6514eb9d3e4dSMatthew G. Knepley PetscBool usePerm = dm->ignorePermOutput ? PETSC_FALSE : PETSC_TRUE; 651514f150ffSMatthew G. Knepley 65169566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->dmBC)); 65179566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, dm->dmBC)); 65189566063dSJacob Faibussowitsch PetscCall(PetscSectionClone(section, &newSection)); 65199566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm->dmBC, newSection)); 65209566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newSection)); 652192a26154SJames Wright PetscCall(DMGetNaturalSF(dm, &sfNatural)); 652292a26154SJames Wright PetscCall(DMSetNaturalSF(dm->dmBC, sfNatural)); 65239566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm->dmBC, &sf)); 6524eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionCreateGlobalSection(section, sf, usePerm, PETSC_TRUE, PETSC_FALSE, &gsection)); 65259566063dSJacob Faibussowitsch PetscCall(DMSetGlobalSection(dm->dmBC, gsection)); 65269566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&gsection)); 652714f150ffSMatthew G. Knepley } 652814f150ffSMatthew G. Knepley *odm = dm->dmBC; 65293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 653014f150ffSMatthew G. Knepley } 6531f4d763aaSMatthew G. Knepley 6532f4d763aaSMatthew G. Knepley /*@ 6533cdb7a50dSMatthew G. Knepley DMGetOutputSequenceNumber - Retrieve the sequence number/value for output 6534f4d763aaSMatthew G. Knepley 6535f4d763aaSMatthew G. Knepley Input Parameter: 6536bb7acecfSBarry Smith . dm - The original `DM` 6537f4d763aaSMatthew G. Knepley 6538cdb7a50dSMatthew G. Knepley Output Parameters: 6539cdb7a50dSMatthew G. Knepley + num - The output sequence number 6540cdb7a50dSMatthew G. Knepley - val - The output sequence value 6541f4d763aaSMatthew G. Knepley 6542f4d763aaSMatthew G. Knepley Level: intermediate 6543f4d763aaSMatthew G. Knepley 6544bb7acecfSBarry Smith Note: 6545bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6546bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6547bb7acecfSBarry Smith 654873ff1848SBarry Smith Developer Note: 6549bb7acecfSBarry Smith The `DM` serves as a convenient place to store the current iteration value. The iteration is not 6550bb7acecfSBarry Smith not directly related to the `DM`. 6551f4d763aaSMatthew G. Knepley 65521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()` 6553f4d763aaSMatthew G. Knepley @*/ 6554d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputSequenceNumber(DM dm, PetscInt *num, PetscReal *val) 6555d71ae5a4SJacob Faibussowitsch { 6556f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6557f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 65589371c9d4SSatish Balay if (num) { 65594f572ea9SToby Isaac PetscAssertPointer(num, 2); 65609371c9d4SSatish Balay *num = dm->outputSequenceNum; 65619371c9d4SSatish Balay } 65629371c9d4SSatish Balay if (val) { 65634f572ea9SToby Isaac PetscAssertPointer(val, 3); 65649371c9d4SSatish Balay *val = dm->outputSequenceVal; 65659371c9d4SSatish Balay } 65663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6567f4d763aaSMatthew G. Knepley } 6568f4d763aaSMatthew G. Knepley 6569f4d763aaSMatthew G. Knepley /*@ 6570cdb7a50dSMatthew G. Knepley DMSetOutputSequenceNumber - Set the sequence number/value for output 6571f4d763aaSMatthew G. Knepley 6572f4d763aaSMatthew G. Knepley Input Parameters: 6573bb7acecfSBarry Smith + dm - The original `DM` 6574cdb7a50dSMatthew G. Knepley . num - The output sequence number 6575cdb7a50dSMatthew G. Knepley - val - The output sequence value 6576f4d763aaSMatthew G. Knepley 6577f4d763aaSMatthew G. Knepley Level: intermediate 6578f4d763aaSMatthew G. Knepley 6579bb7acecfSBarry Smith Note: 6580bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6581bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6582f4d763aaSMatthew G. Knepley 65831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()` 6584f4d763aaSMatthew G. Knepley @*/ 6585d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOutputSequenceNumber(DM dm, PetscInt num, PetscReal val) 6586d71ae5a4SJacob Faibussowitsch { 6587f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6588f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6589f4d763aaSMatthew G. Knepley dm->outputSequenceNum = num; 6590cdb7a50dSMatthew G. Knepley dm->outputSequenceVal = val; 65913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6592cdb7a50dSMatthew G. Knepley } 6593cdb7a50dSMatthew G. Knepley 65945d83a8b1SBarry Smith /*@ 6595bb7acecfSBarry Smith DMOutputSequenceLoad - Retrieve the sequence value from a `PetscViewer` 6596cdb7a50dSMatthew G. Knepley 6597cdb7a50dSMatthew G. Knepley Input Parameters: 6598bb7acecfSBarry Smith + dm - The original `DM` 6599b2033f5dSMatthew G. Knepley . viewer - The `PetscViewer` to get it from 6600cdb7a50dSMatthew G. Knepley . name - The sequence name 6601cdb7a50dSMatthew G. Knepley - num - The output sequence number 6602cdb7a50dSMatthew G. Knepley 6603cdb7a50dSMatthew G. Knepley Output Parameter: 6604cdb7a50dSMatthew G. Knepley . val - The output sequence value 6605cdb7a50dSMatthew G. Knepley 6606cdb7a50dSMatthew G. Knepley Level: intermediate 6607cdb7a50dSMatthew G. Knepley 6608bb7acecfSBarry Smith Note: 6609bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6610bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6611bb7acecfSBarry Smith 661273ff1848SBarry Smith Developer Note: 6613bb7acecfSBarry Smith It is unclear at the user API level why a `DM` is needed as input 6614cdb7a50dSMatthew G. Knepley 66151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()` 6616cdb7a50dSMatthew G. Knepley @*/ 6617b2033f5dSMatthew G. Knepley PetscErrorCode DMOutputSequenceLoad(DM dm, PetscViewer viewer, const char name[], PetscInt num, PetscReal *val) 6618d71ae5a4SJacob Faibussowitsch { 6619cdb7a50dSMatthew G. Knepley PetscBool ishdf5; 6620cdb7a50dSMatthew G. Knepley 6621cdb7a50dSMatthew G. Knepley PetscFunctionBegin; 6622cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6623cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 6624b2033f5dSMatthew G. Knepley PetscAssertPointer(name, 3); 66254f572ea9SToby Isaac PetscAssertPointer(val, 5); 66269566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 6627cdb7a50dSMatthew G. Knepley if (ishdf5) { 6628cdb7a50dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 6629cdb7a50dSMatthew G. Knepley PetscScalar value; 6630cdb7a50dSMatthew G. Knepley 66319566063dSJacob Faibussowitsch PetscCall(DMSequenceLoad_HDF5_Internal(dm, name, num, &value, viewer)); 66324aeb217fSMatthew G. Knepley *val = PetscRealPart(value); 6633cdb7a50dSMatthew G. Knepley #endif 6634cdb7a50dSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()"); 66353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6636f4d763aaSMatthew G. Knepley } 66378e4ac7eaSMatthew G. Knepley 66388e4ac7eaSMatthew G. Knepley /*@ 6639b2033f5dSMatthew G. Knepley DMGetOutputSequenceLength - Retrieve the number of sequence values from a `PetscViewer` 6640b2033f5dSMatthew G. Knepley 6641b2033f5dSMatthew G. Knepley Input Parameters: 6642b2033f5dSMatthew G. Knepley + dm - The original `DM` 6643b2033f5dSMatthew G. Knepley . viewer - The `PetscViewer` to get it from 6644b2033f5dSMatthew G. Knepley - name - The sequence name 6645b2033f5dSMatthew G. Knepley 6646b2033f5dSMatthew G. Knepley Output Parameter: 6647b2033f5dSMatthew G. Knepley . len - The length of the output sequence 6648b2033f5dSMatthew G. Knepley 6649b2033f5dSMatthew G. Knepley Level: intermediate 6650b2033f5dSMatthew G. Knepley 6651b2033f5dSMatthew G. Knepley Note: 6652b2033f5dSMatthew G. Knepley This is intended for output that should appear in sequence, for instance 6653b2033f5dSMatthew G. Knepley a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6654b2033f5dSMatthew G. Knepley 6655b2033f5dSMatthew G. Knepley Developer Note: 6656b2033f5dSMatthew G. Knepley It is unclear at the user API level why a `DM` is needed as input 6657b2033f5dSMatthew G. Knepley 6658b2033f5dSMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()` 6659b2033f5dSMatthew G. Knepley @*/ 6660b2033f5dSMatthew G. Knepley PetscErrorCode DMGetOutputSequenceLength(DM dm, PetscViewer viewer, const char name[], PetscInt *len) 6661b2033f5dSMatthew G. Knepley { 6662b2033f5dSMatthew G. Knepley PetscBool ishdf5; 6663b2033f5dSMatthew G. Knepley 6664b2033f5dSMatthew G. Knepley PetscFunctionBegin; 6665b2033f5dSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6666b2033f5dSMatthew G. Knepley PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 6667b2033f5dSMatthew G. Knepley PetscAssertPointer(name, 3); 6668b2033f5dSMatthew G. Knepley PetscAssertPointer(len, 4); 6669b2033f5dSMatthew G. Knepley PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 6670b2033f5dSMatthew G. Knepley if (ishdf5) { 6671b2033f5dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 6672b2033f5dSMatthew G. Knepley PetscCall(DMSequenceGetLength_HDF5_Internal(dm, name, len, viewer)); 6673b2033f5dSMatthew G. Knepley #endif 6674b2033f5dSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()"); 6675b2033f5dSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 6676b2033f5dSMatthew G. Knepley } 6677b2033f5dSMatthew G. Knepley 6678b2033f5dSMatthew G. Knepley /*@ 6679bb7acecfSBarry Smith DMGetUseNatural - Get the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 66808e4ac7eaSMatthew G. Knepley 668120f4b53cSBarry Smith Not Collective 66828e4ac7eaSMatthew G. Knepley 66838e4ac7eaSMatthew G. Knepley Input Parameter: 6684bb7acecfSBarry Smith . dm - The `DM` 66858e4ac7eaSMatthew G. Knepley 66868e4ac7eaSMatthew G. Knepley Output Parameter: 6687bb7acecfSBarry Smith . useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 66888e4ac7eaSMatthew G. Knepley 66898e4ac7eaSMatthew G. Knepley Level: beginner 66908e4ac7eaSMatthew G. Knepley 66911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetUseNatural()`, `DMCreate()` 66928e4ac7eaSMatthew G. Knepley @*/ 6693d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetUseNatural(DM dm, PetscBool *useNatural) 6694d71ae5a4SJacob Faibussowitsch { 66958e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 66968e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 66974f572ea9SToby Isaac PetscAssertPointer(useNatural, 2); 66988e4ac7eaSMatthew G. Knepley *useNatural = dm->useNatural; 66993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 67008e4ac7eaSMatthew G. Knepley } 67018e4ac7eaSMatthew G. Knepley 67028e4ac7eaSMatthew G. Knepley /*@ 6703bb7acecfSBarry Smith DMSetUseNatural - Set the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 67048e4ac7eaSMatthew G. Knepley 670520f4b53cSBarry Smith Collective 67068e4ac7eaSMatthew G. Knepley 67078e4ac7eaSMatthew G. Knepley Input Parameters: 6708bb7acecfSBarry Smith + dm - The `DM` 6709bb7acecfSBarry Smith - useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 67108e4ac7eaSMatthew G. Knepley 671173ff1848SBarry Smith Level: beginner 671273ff1848SBarry Smith 6713bb7acecfSBarry Smith Note: 6714bb7acecfSBarry Smith This also causes the map to be build after `DMCreateSubDM()` and `DMCreateSuperDM()` 67155d3b26e6SMatthew G. Knepley 67161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetUseNatural()`, `DMCreate()`, `DMPlexDistribute()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 67178e4ac7eaSMatthew G. Knepley @*/ 6718d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUseNatural(DM dm, PetscBool useNatural) 6719d71ae5a4SJacob Faibussowitsch { 67208e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 67218e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67228833efb5SBlaise Bourdin PetscValidLogicalCollectiveBool(dm, useNatural, 2); 67238e4ac7eaSMatthew G. Knepley dm->useNatural = useNatural; 67243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 67258e4ac7eaSMatthew G. Knepley } 6726c58f1c22SToby Isaac 6727cc4c1da9SBarry Smith /*@ 6728bb7acecfSBarry Smith DMCreateLabel - Create a label of the given name if it does not already exist in the `DM` 6729c58f1c22SToby Isaac 6730c58f1c22SToby Isaac Not Collective 6731c58f1c22SToby Isaac 6732c58f1c22SToby Isaac Input Parameters: 6733bb7acecfSBarry Smith + dm - The `DM` object 6734c58f1c22SToby Isaac - name - The label name 6735c58f1c22SToby Isaac 6736c58f1c22SToby Isaac Level: intermediate 6737c58f1c22SToby Isaac 67381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6739c58f1c22SToby Isaac @*/ 6740d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabel(DM dm, const char name[]) 6741d71ae5a4SJacob Faibussowitsch { 67425d80c0bfSVaclav Hapla PetscBool flg; 67435d80c0bfSVaclav Hapla DMLabel label; 6744c58f1c22SToby Isaac 6745c58f1c22SToby Isaac PetscFunctionBegin; 6746c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67474f572ea9SToby Isaac PetscAssertPointer(name, 2); 67489566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 6749c58f1c22SToby Isaac if (!flg) { 67509566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 67519566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 67529566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 6753c58f1c22SToby Isaac } 67543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6755c58f1c22SToby Isaac } 6756c58f1c22SToby Isaac 6757cc4c1da9SBarry Smith /*@ 6758bb7acecfSBarry Smith DMCreateLabelAtIndex - Create a label of the given name at the given index. If it already exists in the `DM`, move it to this index. 67590fdc7489SMatthew Knepley 67600fdc7489SMatthew Knepley Not Collective 67610fdc7489SMatthew Knepley 67620fdc7489SMatthew Knepley Input Parameters: 6763bb7acecfSBarry Smith + dm - The `DM` object 67640fdc7489SMatthew Knepley . l - The index for the label 67650fdc7489SMatthew Knepley - name - The label name 67660fdc7489SMatthew Knepley 67670fdc7489SMatthew Knepley Level: intermediate 67680fdc7489SMatthew Knepley 67691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateLabel()`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 67700fdc7489SMatthew Knepley @*/ 6771d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabelAtIndex(DM dm, PetscInt l, const char name[]) 6772d71ae5a4SJacob Faibussowitsch { 67730fdc7489SMatthew Knepley DMLabelLink orig, prev = NULL; 67740fdc7489SMatthew Knepley DMLabel label; 67750fdc7489SMatthew Knepley PetscInt Nl, m; 67760fdc7489SMatthew Knepley PetscBool flg, match; 67770fdc7489SMatthew Knepley const char *lname; 67780fdc7489SMatthew Knepley 67790fdc7489SMatthew Knepley PetscFunctionBegin; 67800fdc7489SMatthew Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67814f572ea9SToby Isaac PetscAssertPointer(name, 3); 67829566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 67830fdc7489SMatthew Knepley if (!flg) { 67849566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 67859566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 67869566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 67870fdc7489SMatthew Knepley } 67889566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 678963a3b9bcSJacob Faibussowitsch PetscCheck(l < Nl, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label index %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", l, Nl); 67900fdc7489SMatthew Knepley for (m = 0, orig = dm->labels; m < Nl; ++m, prev = orig, orig = orig->next) { 67919566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)orig->label, &lname)); 67929566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &match)); 67930fdc7489SMatthew Knepley if (match) break; 67940fdc7489SMatthew Knepley } 67953ba16761SJacob Faibussowitsch if (m == l) PetscFunctionReturn(PETSC_SUCCESS); 67960fdc7489SMatthew Knepley if (!m) dm->labels = orig->next; 67970fdc7489SMatthew Knepley else prev->next = orig->next; 67980fdc7489SMatthew Knepley if (!l) { 67990fdc7489SMatthew Knepley orig->next = dm->labels; 68000fdc7489SMatthew Knepley dm->labels = orig; 68010fdc7489SMatthew Knepley } else { 6802fbccb6d4SPierre Jolivet for (m = 0, prev = dm->labels; m < l - 1; ++m, prev = prev->next); 68030fdc7489SMatthew Knepley orig->next = prev->next; 68040fdc7489SMatthew Knepley prev->next = orig; 68050fdc7489SMatthew Knepley } 68063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 68070fdc7489SMatthew Knepley } 68080fdc7489SMatthew Knepley 6809cc4c1da9SBarry Smith /*@ 6810bb7acecfSBarry Smith DMGetLabelValue - Get the value in a `DMLabel` for the given point, with -1 as the default 6811c58f1c22SToby Isaac 6812c58f1c22SToby Isaac Not Collective 6813c58f1c22SToby Isaac 6814c58f1c22SToby Isaac Input Parameters: 6815bb7acecfSBarry Smith + dm - The `DM` object 6816c58f1c22SToby Isaac . name - The label name 6817c58f1c22SToby Isaac - point - The mesh point 6818c58f1c22SToby Isaac 6819c58f1c22SToby Isaac Output Parameter: 6820c58f1c22SToby Isaac . value - The label value for this point, or -1 if the point is not in the label 6821c58f1c22SToby Isaac 6822c58f1c22SToby Isaac Level: beginner 6823c58f1c22SToby Isaac 68241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6825c58f1c22SToby Isaac @*/ 6826d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelValue(DM dm, const char name[], PetscInt point, PetscInt *value) 6827d71ae5a4SJacob Faibussowitsch { 6828c58f1c22SToby Isaac DMLabel label; 6829c58f1c22SToby Isaac 6830c58f1c22SToby Isaac PetscFunctionBegin; 6831c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68324f572ea9SToby Isaac PetscAssertPointer(name, 2); 68339566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 68347a8be351SBarry Smith PetscCheck(label, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No label named %s was found", name); 68359566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, value)); 68363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6837c58f1c22SToby Isaac } 6838c58f1c22SToby Isaac 6839cc4c1da9SBarry Smith /*@ 6840bb7acecfSBarry Smith DMSetLabelValue - Add a point to a `DMLabel` with given value 6841c58f1c22SToby Isaac 6842c58f1c22SToby Isaac Not Collective 6843c58f1c22SToby Isaac 6844c58f1c22SToby Isaac Input Parameters: 6845bb7acecfSBarry Smith + dm - The `DM` object 6846c58f1c22SToby Isaac . name - The label name 6847c58f1c22SToby Isaac . point - The mesh point 6848c58f1c22SToby Isaac - value - The label value for this point 6849c58f1c22SToby Isaac 6850c58f1c22SToby Isaac Output Parameter: 6851c58f1c22SToby Isaac 6852c58f1c22SToby Isaac Level: beginner 6853c58f1c22SToby Isaac 68541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelSetValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 6855c58f1c22SToby Isaac @*/ 6856d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6857d71ae5a4SJacob Faibussowitsch { 6858c58f1c22SToby Isaac DMLabel label; 6859c58f1c22SToby Isaac 6860c58f1c22SToby Isaac PetscFunctionBegin; 6861c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68624f572ea9SToby Isaac PetscAssertPointer(name, 2); 68639566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6864c58f1c22SToby Isaac if (!label) { 68659566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 68669566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6867c58f1c22SToby Isaac } 68689566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, value)); 68693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6870c58f1c22SToby Isaac } 6871c58f1c22SToby Isaac 6872cc4c1da9SBarry Smith /*@ 6873bb7acecfSBarry Smith DMClearLabelValue - Remove a point from a `DMLabel` with given value 6874c58f1c22SToby Isaac 6875c58f1c22SToby Isaac Not Collective 6876c58f1c22SToby Isaac 6877c58f1c22SToby Isaac Input Parameters: 6878bb7acecfSBarry Smith + dm - The `DM` object 6879c58f1c22SToby Isaac . name - The label name 6880c58f1c22SToby Isaac . point - The mesh point 6881c58f1c22SToby Isaac - value - The label value for this point 6882c58f1c22SToby Isaac 6883c58f1c22SToby Isaac Level: beginner 6884c58f1c22SToby Isaac 68851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelClearValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6886c58f1c22SToby Isaac @*/ 6887d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6888d71ae5a4SJacob Faibussowitsch { 6889c58f1c22SToby Isaac DMLabel label; 6890c58f1c22SToby Isaac 6891c58f1c22SToby Isaac PetscFunctionBegin; 6892c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68934f572ea9SToby Isaac PetscAssertPointer(name, 2); 68949566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 68953ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 68969566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, value)); 68973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6898c58f1c22SToby Isaac } 6899c58f1c22SToby Isaac 6900cc4c1da9SBarry Smith /*@ 6901bb7acecfSBarry Smith DMGetLabelSize - Get the value of `DMLabelGetNumValues()` of a `DMLabel` in the `DM` 6902c58f1c22SToby Isaac 6903c58f1c22SToby Isaac Not Collective 6904c58f1c22SToby Isaac 6905c58f1c22SToby Isaac Input Parameters: 6906bb7acecfSBarry Smith + dm - The `DM` object 6907c58f1c22SToby Isaac - name - The label name 6908c58f1c22SToby Isaac 6909c58f1c22SToby Isaac Output Parameter: 6910c58f1c22SToby Isaac . size - The number of different integer ids, or 0 if the label does not exist 6911c58f1c22SToby Isaac 6912c58f1c22SToby Isaac Level: beginner 6913c58f1c22SToby Isaac 691473ff1848SBarry Smith Developer Note: 6915bb7acecfSBarry Smith This should be renamed to something like `DMGetLabelNumValues()` or removed. 6916bb7acecfSBarry Smith 69171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetNumValues()`, `DMSetLabelValue()`, `DMGetLabel()` 6918c58f1c22SToby Isaac @*/ 6919d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelSize(DM dm, const char name[], PetscInt *size) 6920d71ae5a4SJacob Faibussowitsch { 6921c58f1c22SToby Isaac DMLabel label; 6922c58f1c22SToby Isaac 6923c58f1c22SToby Isaac PetscFunctionBegin; 6924c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69254f572ea9SToby Isaac PetscAssertPointer(name, 2); 69264f572ea9SToby Isaac PetscAssertPointer(size, 3); 69279566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6928c58f1c22SToby Isaac *size = 0; 69293ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69309566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, size)); 69313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6932c58f1c22SToby Isaac } 6933c58f1c22SToby Isaac 6934cc4c1da9SBarry Smith /*@ 6935bb7acecfSBarry Smith DMGetLabelIdIS - Get the `DMLabelGetValueIS()` from a `DMLabel` in the `DM` 6936c58f1c22SToby Isaac 6937c58f1c22SToby Isaac Not Collective 6938c58f1c22SToby Isaac 6939c58f1c22SToby Isaac Input Parameters: 694060225df5SJacob Faibussowitsch + dm - The `DM` object 6941c58f1c22SToby Isaac - name - The label name 6942c58f1c22SToby Isaac 6943c58f1c22SToby Isaac Output Parameter: 694420f4b53cSBarry Smith . ids - The integer ids, or `NULL` if the label does not exist 6945c58f1c22SToby Isaac 6946c58f1c22SToby Isaac Level: beginner 6947c58f1c22SToby Isaac 69481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValueIS()`, `DMGetLabelSize()` 6949c58f1c22SToby Isaac @*/ 6950d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelIdIS(DM dm, const char name[], IS *ids) 6951d71ae5a4SJacob Faibussowitsch { 6952c58f1c22SToby Isaac DMLabel label; 6953c58f1c22SToby Isaac 6954c58f1c22SToby Isaac PetscFunctionBegin; 6955c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69564f572ea9SToby Isaac PetscAssertPointer(name, 2); 69574f572ea9SToby Isaac PetscAssertPointer(ids, 3); 69589566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6959c58f1c22SToby Isaac *ids = NULL; 6960dab2e251SBlaise Bourdin if (label) { 69619566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, ids)); 6962dab2e251SBlaise Bourdin } else { 6963dab2e251SBlaise Bourdin /* returning an empty IS */ 69649566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_USE_POINTER, ids)); 6965dab2e251SBlaise Bourdin } 69663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6967c58f1c22SToby Isaac } 6968c58f1c22SToby Isaac 6969cc4c1da9SBarry Smith /*@ 6970c58f1c22SToby Isaac DMGetStratumSize - Get the number of points in a label stratum 6971c58f1c22SToby Isaac 6972c58f1c22SToby Isaac Not Collective 6973c58f1c22SToby Isaac 6974c58f1c22SToby Isaac Input Parameters: 6975bb7acecfSBarry Smith + dm - The `DM` object 6976b6971eaeSBarry Smith . name - The label name of the stratum 6977c58f1c22SToby Isaac - value - The stratum value 6978c58f1c22SToby Isaac 6979c58f1c22SToby Isaac Output Parameter: 6980bb7acecfSBarry Smith . size - The number of points, also called the stratum size 6981c58f1c22SToby Isaac 6982c58f1c22SToby Isaac Level: beginner 6983c58f1c22SToby Isaac 69841cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumSize()`, `DMGetLabelSize()`, `DMGetLabelIds()` 6985c58f1c22SToby Isaac @*/ 6986d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumSize(DM dm, const char name[], PetscInt value, PetscInt *size) 6987d71ae5a4SJacob Faibussowitsch { 6988c58f1c22SToby Isaac DMLabel label; 6989c58f1c22SToby Isaac 6990c58f1c22SToby Isaac PetscFunctionBegin; 6991c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69924f572ea9SToby Isaac PetscAssertPointer(name, 2); 69934f572ea9SToby Isaac PetscAssertPointer(size, 4); 69949566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6995c58f1c22SToby Isaac *size = 0; 69963ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69979566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, value, size)); 69983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6999c58f1c22SToby Isaac } 7000c58f1c22SToby Isaac 7001cc4c1da9SBarry Smith /*@ 7002c58f1c22SToby Isaac DMGetStratumIS - Get the points in a label stratum 7003c58f1c22SToby Isaac 7004c58f1c22SToby Isaac Not Collective 7005c58f1c22SToby Isaac 7006c58f1c22SToby Isaac Input Parameters: 7007bb7acecfSBarry Smith + dm - The `DM` object 7008c58f1c22SToby Isaac . name - The label name 7009c58f1c22SToby Isaac - value - The stratum value 7010c58f1c22SToby Isaac 7011c58f1c22SToby Isaac Output Parameter: 701220f4b53cSBarry Smith . points - The stratum points, or `NULL` if the label does not exist or does not have that value 7013c58f1c22SToby Isaac 7014c58f1c22SToby Isaac Level: beginner 7015c58f1c22SToby Isaac 70161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumIS()`, `DMGetStratumSize()` 7017c58f1c22SToby Isaac @*/ 7018d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumIS(DM dm, const char name[], PetscInt value, IS *points) 7019d71ae5a4SJacob Faibussowitsch { 7020c58f1c22SToby Isaac DMLabel label; 7021c58f1c22SToby Isaac 7022c58f1c22SToby Isaac PetscFunctionBegin; 7023c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70244f572ea9SToby Isaac PetscAssertPointer(name, 2); 70254f572ea9SToby Isaac PetscAssertPointer(points, 4); 70269566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 7027c58f1c22SToby Isaac *points = NULL; 70283ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 70299566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, value, points)); 70303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7031c58f1c22SToby Isaac } 7032c58f1c22SToby Isaac 7033cc4c1da9SBarry Smith /*@ 70349044fa66SMatthew G. Knepley DMSetStratumIS - Set the points in a label stratum 70354de306b1SToby Isaac 70364de306b1SToby Isaac Not Collective 70374de306b1SToby Isaac 70384de306b1SToby Isaac Input Parameters: 7039bb7acecfSBarry Smith + dm - The `DM` object 70404de306b1SToby Isaac . name - The label name 70414de306b1SToby Isaac . value - The stratum value 70424de306b1SToby Isaac - points - The stratum points 70434de306b1SToby Isaac 70444de306b1SToby Isaac Level: beginner 70454de306b1SToby Isaac 70461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMClearLabelStratum()`, `DMLabelClearStratum()`, `DMLabelSetStratumIS()`, `DMGetStratumSize()` 70474de306b1SToby Isaac @*/ 7048d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetStratumIS(DM dm, const char name[], PetscInt value, IS points) 7049d71ae5a4SJacob Faibussowitsch { 70504de306b1SToby Isaac DMLabel label; 70514de306b1SToby Isaac 70524de306b1SToby Isaac PetscFunctionBegin; 70534de306b1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70544f572ea9SToby Isaac PetscAssertPointer(name, 2); 7055292bffcbSToby Isaac PetscValidHeaderSpecific(points, IS_CLASSID, 4); 70569566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 70573ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 70589566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(label, value, points)); 70593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70604de306b1SToby Isaac } 70614de306b1SToby Isaac 7062cc4c1da9SBarry Smith /*@ 7063bb7acecfSBarry Smith DMClearLabelStratum - Remove all points from a stratum from a `DMLabel` 7064c58f1c22SToby Isaac 7065c58f1c22SToby Isaac Not Collective 7066c58f1c22SToby Isaac 7067c58f1c22SToby Isaac Input Parameters: 7068bb7acecfSBarry Smith + dm - The `DM` object 7069c58f1c22SToby Isaac . name - The label name 7070c58f1c22SToby Isaac - value - The label value for this point 7071c58f1c22SToby Isaac 7072c58f1c22SToby Isaac Output Parameter: 7073c58f1c22SToby Isaac 7074c58f1c22SToby Isaac Level: beginner 7075c58f1c22SToby Isaac 70761cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMLabelClearStratum()`, `DMSetLabelValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 7077c58f1c22SToby Isaac @*/ 7078d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelStratum(DM dm, const char name[], PetscInt value) 7079d71ae5a4SJacob Faibussowitsch { 7080c58f1c22SToby Isaac DMLabel label; 7081c58f1c22SToby Isaac 7082c58f1c22SToby Isaac PetscFunctionBegin; 7083c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70844f572ea9SToby Isaac PetscAssertPointer(name, 2); 70859566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 70863ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 70879566063dSJacob Faibussowitsch PetscCall(DMLabelClearStratum(label, value)); 70883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7089c58f1c22SToby Isaac } 7090c58f1c22SToby Isaac 7091c58f1c22SToby Isaac /*@ 7092bb7acecfSBarry Smith DMGetNumLabels - Return the number of labels defined by on the `DM` 7093c58f1c22SToby Isaac 7094c58f1c22SToby Isaac Not Collective 7095c58f1c22SToby Isaac 7096c58f1c22SToby Isaac Input Parameter: 7097bb7acecfSBarry Smith . dm - The `DM` object 7098c58f1c22SToby Isaac 7099c58f1c22SToby Isaac Output Parameter: 7100c58f1c22SToby Isaac . numLabels - the number of Labels 7101c58f1c22SToby Isaac 7102c58f1c22SToby Isaac Level: intermediate 7103c58f1c22SToby Isaac 71041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabelName()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7105c58f1c22SToby Isaac @*/ 7106d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumLabels(DM dm, PetscInt *numLabels) 7107d71ae5a4SJacob Faibussowitsch { 71085d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7109c58f1c22SToby Isaac PetscInt n = 0; 7110c58f1c22SToby Isaac 7111c58f1c22SToby Isaac PetscFunctionBegin; 7112c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71134f572ea9SToby Isaac PetscAssertPointer(numLabels, 2); 71149371c9d4SSatish Balay while (next) { 71159371c9d4SSatish Balay ++n; 71169371c9d4SSatish Balay next = next->next; 71179371c9d4SSatish Balay } 7118c58f1c22SToby Isaac *numLabels = n; 71193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7120c58f1c22SToby Isaac } 7121c58f1c22SToby Isaac 7122cc4c1da9SBarry Smith /*@ 7123c58f1c22SToby Isaac DMGetLabelName - Return the name of nth label 7124c58f1c22SToby Isaac 7125c58f1c22SToby Isaac Not Collective 7126c58f1c22SToby Isaac 7127c58f1c22SToby Isaac Input Parameters: 7128bb7acecfSBarry Smith + dm - The `DM` object 7129c58f1c22SToby Isaac - n - the label number 7130c58f1c22SToby Isaac 7131c58f1c22SToby Isaac Output Parameter: 7132c58f1c22SToby Isaac . name - the label name 7133c58f1c22SToby Isaac 7134c58f1c22SToby Isaac Level: intermediate 7135c58f1c22SToby Isaac 713673ff1848SBarry Smith Developer Note: 7137bb7acecfSBarry Smith Some of the functions that appropriate on labels using their number have the suffix ByNum, others do not. 7138bb7acecfSBarry Smith 71391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7140c58f1c22SToby Isaac @*/ 7141cc4c1da9SBarry Smith PetscErrorCode DMGetLabelName(DM dm, PetscInt n, const char *name[]) 7142d71ae5a4SJacob Faibussowitsch { 71435d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7144c58f1c22SToby Isaac PetscInt l = 0; 7145c58f1c22SToby Isaac 7146c58f1c22SToby Isaac PetscFunctionBegin; 7147c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71484f572ea9SToby Isaac PetscAssertPointer(name, 3); 7149c58f1c22SToby Isaac while (next) { 7150c58f1c22SToby Isaac if (l == n) { 71519566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, name)); 71523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7153c58f1c22SToby Isaac } 7154c58f1c22SToby Isaac ++l; 7155c58f1c22SToby Isaac next = next->next; 7156c58f1c22SToby Isaac } 715763a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 7158c58f1c22SToby Isaac } 7159c58f1c22SToby Isaac 7160cc4c1da9SBarry Smith /*@ 7161bb7acecfSBarry Smith DMHasLabel - Determine whether the `DM` has a label of a given name 7162c58f1c22SToby Isaac 7163c58f1c22SToby Isaac Not Collective 7164c58f1c22SToby Isaac 7165c58f1c22SToby Isaac Input Parameters: 7166bb7acecfSBarry Smith + dm - The `DM` object 7167c58f1c22SToby Isaac - name - The label name 7168c58f1c22SToby Isaac 7169c58f1c22SToby Isaac Output Parameter: 7170bb7acecfSBarry Smith . hasLabel - `PETSC_TRUE` if the label is present 7171c58f1c22SToby Isaac 7172c58f1c22SToby Isaac Level: intermediate 7173c58f1c22SToby Isaac 71741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabel()`, `DMGetLabelByNum()`, `DMCreateLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7175c58f1c22SToby Isaac @*/ 7176d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasLabel(DM dm, const char name[], PetscBool *hasLabel) 7177d71ae5a4SJacob Faibussowitsch { 71785d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7179d67d17b1SMatthew G. Knepley const char *lname; 7180c58f1c22SToby Isaac 7181c58f1c22SToby Isaac PetscFunctionBegin; 7182c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71834f572ea9SToby Isaac PetscAssertPointer(name, 2); 71844f572ea9SToby Isaac PetscAssertPointer(hasLabel, 3); 7185c58f1c22SToby Isaac *hasLabel = PETSC_FALSE; 7186c58f1c22SToby Isaac while (next) { 71879566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 71889566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, hasLabel)); 7189c58f1c22SToby Isaac if (*hasLabel) break; 7190c58f1c22SToby Isaac next = next->next; 7191c58f1c22SToby Isaac } 71923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7193c58f1c22SToby Isaac } 7194c58f1c22SToby Isaac 7195a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown 7196cc4c1da9SBarry Smith /*@ 719720f4b53cSBarry Smith DMGetLabel - Return the label of a given name, or `NULL`, from a `DM` 7198c58f1c22SToby Isaac 7199c58f1c22SToby Isaac Not Collective 7200c58f1c22SToby Isaac 7201c58f1c22SToby Isaac Input Parameters: 7202bb7acecfSBarry Smith + dm - The `DM` object 7203c58f1c22SToby Isaac - name - The label name 7204c58f1c22SToby Isaac 7205c58f1c22SToby Isaac Output Parameter: 720620f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent 7207c58f1c22SToby Isaac 7208bb7acecfSBarry Smith Default labels in a `DMPLEX`: 7209bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 7210bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 7211bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 7212bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 7213bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 7214bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 72156d7c9049SMatthew G. Knepley 7216c58f1c22SToby Isaac Level: intermediate 7217c58f1c22SToby Isaac 721860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMHasLabel()`, `DMGetLabelByNum()`, `DMAddLabel()`, `DMCreateLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 7219c58f1c22SToby Isaac @*/ 7220d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabel(DM dm, const char name[], DMLabel *label) 7221d71ae5a4SJacob Faibussowitsch { 72225d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7223c58f1c22SToby Isaac PetscBool hasLabel; 7224d67d17b1SMatthew G. Knepley const char *lname; 7225c58f1c22SToby Isaac 7226c58f1c22SToby Isaac PetscFunctionBegin; 7227c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72284f572ea9SToby Isaac PetscAssertPointer(name, 2); 72294f572ea9SToby Isaac PetscAssertPointer(label, 3); 7230c58f1c22SToby Isaac *label = NULL; 7231c58f1c22SToby Isaac while (next) { 72329566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 72339566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 7234c58f1c22SToby Isaac if (hasLabel) { 7235c58f1c22SToby Isaac *label = next->label; 7236c58f1c22SToby Isaac break; 7237c58f1c22SToby Isaac } 7238c58f1c22SToby Isaac next = next->next; 7239c58f1c22SToby Isaac } 72403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7241c58f1c22SToby Isaac } 7242c58f1c22SToby Isaac 7243cc4c1da9SBarry Smith /*@ 7244bb7acecfSBarry Smith DMGetLabelByNum - Return the nth label on a `DM` 7245c58f1c22SToby Isaac 7246c58f1c22SToby Isaac Not Collective 7247c58f1c22SToby Isaac 7248c58f1c22SToby Isaac Input Parameters: 7249bb7acecfSBarry Smith + dm - The `DM` object 7250c58f1c22SToby Isaac - n - the label number 7251c58f1c22SToby Isaac 7252c58f1c22SToby Isaac Output Parameter: 7253c58f1c22SToby Isaac . label - the label 7254c58f1c22SToby Isaac 7255c58f1c22SToby Isaac Level: intermediate 7256c58f1c22SToby Isaac 72571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7258c58f1c22SToby Isaac @*/ 7259d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelByNum(DM dm, PetscInt n, DMLabel *label) 7260d71ae5a4SJacob Faibussowitsch { 72615d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7262c58f1c22SToby Isaac PetscInt l = 0; 7263c58f1c22SToby Isaac 7264c58f1c22SToby Isaac PetscFunctionBegin; 7265c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72664f572ea9SToby Isaac PetscAssertPointer(label, 3); 7267c58f1c22SToby Isaac while (next) { 7268c58f1c22SToby Isaac if (l == n) { 7269c58f1c22SToby Isaac *label = next->label; 72703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7271c58f1c22SToby Isaac } 7272c58f1c22SToby Isaac ++l; 7273c58f1c22SToby Isaac next = next->next; 7274c58f1c22SToby Isaac } 727563a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 7276c58f1c22SToby Isaac } 7277c58f1c22SToby Isaac 7278cc4c1da9SBarry Smith /*@ 7279bb7acecfSBarry Smith DMAddLabel - Add the label to this `DM` 7280c58f1c22SToby Isaac 7281c58f1c22SToby Isaac Not Collective 7282c58f1c22SToby Isaac 7283c58f1c22SToby Isaac Input Parameters: 7284bb7acecfSBarry Smith + dm - The `DM` object 7285bb7acecfSBarry Smith - label - The `DMLabel` 7286c58f1c22SToby Isaac 7287c58f1c22SToby Isaac Level: developer 7288c58f1c22SToby Isaac 728960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7290c58f1c22SToby Isaac @*/ 7291d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddLabel(DM dm, DMLabel label) 7292d71ae5a4SJacob Faibussowitsch { 72935d80c0bfSVaclav Hapla DMLabelLink l, *p, tmpLabel; 7294c58f1c22SToby Isaac PetscBool hasLabel; 7295d67d17b1SMatthew G. Knepley const char *lname; 72965d80c0bfSVaclav Hapla PetscBool flg; 7297c58f1c22SToby Isaac 7298c58f1c22SToby Isaac PetscFunctionBegin; 7299c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73009566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &lname)); 73019566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, lname, &hasLabel)); 73027a8be351SBarry Smith PetscCheck(!hasLabel, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in this DM", lname); 73039566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(1, &tmpLabel)); 7304c58f1c22SToby Isaac tmpLabel->label = label; 7305c58f1c22SToby Isaac tmpLabel->output = PETSC_TRUE; 73065d80c0bfSVaclav Hapla for (p = &dm->labels; (l = *p); p = &l->next) { } 73075d80c0bfSVaclav Hapla *p = tmpLabel; 73089566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 73099566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 73105d80c0bfSVaclav Hapla if (flg) dm->depthLabel = label; 73119566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 7312ba2698f1SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 73133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7314c58f1c22SToby Isaac } 7315c58f1c22SToby Isaac 7316a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown 7317cc4c1da9SBarry Smith /*@ 73184a7ee7d0SMatthew G. Knepley DMSetLabel - Replaces the label of a given name, or ignores it if the name is not present 73194a7ee7d0SMatthew G. Knepley 73204a7ee7d0SMatthew G. Knepley Not Collective 73214a7ee7d0SMatthew G. Knepley 73224a7ee7d0SMatthew G. Knepley Input Parameters: 7323bb7acecfSBarry Smith + dm - The `DM` object 7324bb7acecfSBarry Smith - label - The `DMLabel`, having the same name, to substitute 73254a7ee7d0SMatthew G. Knepley 7326bb7acecfSBarry Smith Default labels in a `DMPLEX`: 7327bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 7328bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 7329bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 7330bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 7331bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 7332bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 73334a7ee7d0SMatthew G. Knepley 73344a7ee7d0SMatthew G. Knepley Level: intermediate 73354a7ee7d0SMatthew G. Knepley 73361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 73374a7ee7d0SMatthew G. Knepley @*/ 7338d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabel(DM dm, DMLabel label) 7339d71ae5a4SJacob Faibussowitsch { 73404a7ee7d0SMatthew G. Knepley DMLabelLink next = dm->labels; 73414a7ee7d0SMatthew G. Knepley PetscBool hasLabel, flg; 73424a7ee7d0SMatthew G. Knepley const char *name, *lname; 73434a7ee7d0SMatthew G. Knepley 73444a7ee7d0SMatthew G. Knepley PetscFunctionBegin; 73454a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73464a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 73479566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 73484a7ee7d0SMatthew G. Knepley while (next) { 73499566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 73509566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 73514a7ee7d0SMatthew G. Knepley if (hasLabel) { 73529566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 73539566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 73544a7ee7d0SMatthew G. Knepley if (flg) dm->depthLabel = label; 73559566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 73564a7ee7d0SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 73579566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 73584a7ee7d0SMatthew G. Knepley next->label = label; 73594a7ee7d0SMatthew G. Knepley break; 73604a7ee7d0SMatthew G. Knepley } 73614a7ee7d0SMatthew G. Knepley next = next->next; 73624a7ee7d0SMatthew G. Knepley } 73633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 73644a7ee7d0SMatthew G. Knepley } 73654a7ee7d0SMatthew G. Knepley 7366cc4c1da9SBarry Smith /*@ 7367bb7acecfSBarry Smith DMRemoveLabel - Remove the label given by name from this `DM` 7368c58f1c22SToby Isaac 7369c58f1c22SToby Isaac Not Collective 7370c58f1c22SToby Isaac 7371c58f1c22SToby Isaac Input Parameters: 7372bb7acecfSBarry Smith + dm - The `DM` object 7373c58f1c22SToby Isaac - name - The label name 7374c58f1c22SToby Isaac 7375c58f1c22SToby Isaac Output Parameter: 737620f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent. Pass in `NULL` to call `DMLabelDestroy()` on the label, otherwise the 7377bb7acecfSBarry Smith caller is responsible for calling `DMLabelDestroy()`. 7378c58f1c22SToby Isaac 7379c58f1c22SToby Isaac Level: developer 7380c58f1c22SToby Isaac 73811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabelBySelf()` 7382c58f1c22SToby Isaac @*/ 7383d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabel(DM dm, const char name[], DMLabel *label) 7384d71ae5a4SJacob Faibussowitsch { 738595d578d6SVaclav Hapla DMLabelLink link, *pnext; 7386c58f1c22SToby Isaac PetscBool hasLabel; 7387d67d17b1SMatthew G. Knepley const char *lname; 7388c58f1c22SToby Isaac 7389c58f1c22SToby Isaac PetscFunctionBegin; 7390c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73914f572ea9SToby Isaac PetscAssertPointer(name, 2); 7392e5472504SVaclav Hapla if (label) { 73934f572ea9SToby Isaac PetscAssertPointer(label, 3); 7394c58f1c22SToby Isaac *label = NULL; 7395e5472504SVaclav Hapla } 73965d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 73979566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)link->label, &lname)); 73989566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 7399c58f1c22SToby Isaac if (hasLabel) { 740095d578d6SVaclav Hapla *pnext = link->next; /* Remove from list */ 74019566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &hasLabel)); 740295d578d6SVaclav Hapla if (hasLabel) dm->depthLabel = NULL; 74039566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &hasLabel)); 7404ba2698f1SMatthew G. Knepley if (hasLabel) dm->celltypeLabel = NULL; 740595d578d6SVaclav Hapla if (label) *label = link->label; 74069566063dSJacob Faibussowitsch else PetscCall(DMLabelDestroy(&link->label)); 74079566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7408c58f1c22SToby Isaac break; 7409c58f1c22SToby Isaac } 7410c58f1c22SToby Isaac } 74113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7412c58f1c22SToby Isaac } 7413c58f1c22SToby Isaac 7414306894acSVaclav Hapla /*@ 7415bb7acecfSBarry Smith DMRemoveLabelBySelf - Remove the label from this `DM` 7416306894acSVaclav Hapla 7417306894acSVaclav Hapla Not Collective 7418306894acSVaclav Hapla 7419306894acSVaclav Hapla Input Parameters: 7420bb7acecfSBarry Smith + dm - The `DM` object 7421bb7acecfSBarry Smith . label - The `DMLabel` to be removed from the `DM` 742220f4b53cSBarry Smith - failNotFound - Should it fail if the label is not found in the `DM`? 7423306894acSVaclav Hapla 7424306894acSVaclav Hapla Level: developer 7425306894acSVaclav Hapla 7426bb7acecfSBarry Smith Note: 7427306894acSVaclav Hapla Only exactly the same instance is removed if found, name match is ignored. 7428bb7acecfSBarry Smith If the `DM` has an exclusive reference to the label, the label gets destroyed and 7429306894acSVaclav Hapla *label nullified. 7430306894acSVaclav Hapla 74311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()` `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabel()` 7432306894acSVaclav Hapla @*/ 7433d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabelBySelf(DM dm, DMLabel *label, PetscBool failNotFound) 7434d71ae5a4SJacob Faibussowitsch { 743543e45a93SVaclav Hapla DMLabelLink link, *pnext; 7436306894acSVaclav Hapla PetscBool hasLabel = PETSC_FALSE; 7437306894acSVaclav Hapla 7438306894acSVaclav Hapla PetscFunctionBegin; 7439306894acSVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 74404f572ea9SToby Isaac PetscAssertPointer(label, 2); 74413ba16761SJacob Faibussowitsch if (!*label && !failNotFound) PetscFunctionReturn(PETSC_SUCCESS); 7442306894acSVaclav Hapla PetscValidHeaderSpecific(*label, DMLABEL_CLASSID, 2); 7443306894acSVaclav Hapla PetscValidLogicalCollectiveBool(dm, failNotFound, 3); 74445d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 744543e45a93SVaclav Hapla if (*label == link->label) { 7446306894acSVaclav Hapla hasLabel = PETSC_TRUE; 744743e45a93SVaclav Hapla *pnext = link->next; /* Remove from list */ 7448306894acSVaclav Hapla if (*label == dm->depthLabel) dm->depthLabel = NULL; 7449ba2698f1SMatthew G. Knepley if (*label == dm->celltypeLabel) dm->celltypeLabel = NULL; 745043e45a93SVaclav Hapla if (((PetscObject)link->label)->refct < 2) *label = NULL; /* nullify if exclusive reference */ 74519566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&link->label)); 74529566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7453306894acSVaclav Hapla break; 7454306894acSVaclav Hapla } 7455306894acSVaclav Hapla } 74567a8be351SBarry Smith PetscCheck(hasLabel || !failNotFound, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Given label not found in DM"); 74573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7458306894acSVaclav Hapla } 7459306894acSVaclav Hapla 7460cc4c1da9SBarry Smith /*@ 7461c58f1c22SToby Isaac DMGetLabelOutput - Get the output flag for a given label 7462c58f1c22SToby Isaac 7463c58f1c22SToby Isaac Not Collective 7464c58f1c22SToby Isaac 7465c58f1c22SToby Isaac Input Parameters: 7466bb7acecfSBarry Smith + dm - The `DM` object 7467c58f1c22SToby Isaac - name - The label name 7468c58f1c22SToby Isaac 7469c58f1c22SToby Isaac Output Parameter: 7470c58f1c22SToby Isaac . output - The flag for output 7471c58f1c22SToby Isaac 7472c58f1c22SToby Isaac Level: developer 7473c58f1c22SToby Isaac 74741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMSetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7475c58f1c22SToby Isaac @*/ 7476d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelOutput(DM dm, const char name[], PetscBool *output) 7477d71ae5a4SJacob Faibussowitsch { 74785d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7479d67d17b1SMatthew G. Knepley const char *lname; 7480c58f1c22SToby Isaac 7481c58f1c22SToby Isaac PetscFunctionBegin; 7482c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 74834f572ea9SToby Isaac PetscAssertPointer(name, 2); 74844f572ea9SToby Isaac PetscAssertPointer(output, 3); 7485c58f1c22SToby Isaac while (next) { 7486c58f1c22SToby Isaac PetscBool flg; 7487c58f1c22SToby Isaac 74889566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 74899566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 74909371c9d4SSatish Balay if (flg) { 74919371c9d4SSatish Balay *output = next->output; 74923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 74939371c9d4SSatish Balay } 7494c58f1c22SToby Isaac next = next->next; 7495c58f1c22SToby Isaac } 749698921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7497c58f1c22SToby Isaac } 7498c58f1c22SToby Isaac 7499cc4c1da9SBarry Smith /*@ 7500bb7acecfSBarry Smith DMSetLabelOutput - Set if a given label should be saved to a `PetscViewer` in calls to `DMView()` 7501c58f1c22SToby Isaac 7502c58f1c22SToby Isaac Not Collective 7503c58f1c22SToby Isaac 7504c58f1c22SToby Isaac Input Parameters: 7505bb7acecfSBarry Smith + dm - The `DM` object 7506c58f1c22SToby Isaac . name - The label name 7507bb7acecfSBarry Smith - output - `PETSC_TRUE` to save the label to the viewer 7508c58f1c22SToby Isaac 7509c58f1c22SToby Isaac Level: developer 7510c58f1c22SToby Isaac 75111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetOutputFlag()`, `DMGetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7512c58f1c22SToby Isaac @*/ 7513d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelOutput(DM dm, const char name[], PetscBool output) 7514d71ae5a4SJacob Faibussowitsch { 75155d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7516d67d17b1SMatthew G. Knepley const char *lname; 7517c58f1c22SToby Isaac 7518c58f1c22SToby Isaac PetscFunctionBegin; 7519c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 75204f572ea9SToby Isaac PetscAssertPointer(name, 2); 7521c58f1c22SToby Isaac while (next) { 7522c58f1c22SToby Isaac PetscBool flg; 7523c58f1c22SToby Isaac 75249566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 75259566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 75269371c9d4SSatish Balay if (flg) { 75279371c9d4SSatish Balay next->output = output; 75283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 75299371c9d4SSatish Balay } 7530c58f1c22SToby Isaac next = next->next; 7531c58f1c22SToby Isaac } 753298921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7533c58f1c22SToby Isaac } 7534c58f1c22SToby Isaac 7535c58f1c22SToby Isaac /*@ 7536bb7acecfSBarry Smith DMCopyLabels - Copy labels from one `DM` mesh to another `DM` with a superset of the points 7537c58f1c22SToby Isaac 753820f4b53cSBarry Smith Collective 7539c58f1c22SToby Isaac 7540d8d19677SJose E. Roman Input Parameters: 7541bb7acecfSBarry Smith + dmA - The `DM` object with initial labels 7542bb7acecfSBarry Smith . dmB - The `DM` object to which labels are copied 7543bb7acecfSBarry Smith . mode - Copy labels by pointers (`PETSC_OWN_POINTER`) or duplicate them (`PETSC_COPY_VALUES`) 7544bb7acecfSBarry Smith . all - Copy all labels including "depth", "dim", and "celltype" (`PETSC_TRUE`) which are otherwise ignored (`PETSC_FALSE`) 7545bb7acecfSBarry Smith - emode - How to behave when a `DMLabel` in the source and destination `DM`s with the same name is encountered (see `DMCopyLabelsMode`) 7546c58f1c22SToby Isaac 7547c58f1c22SToby Isaac Level: intermediate 7548c58f1c22SToby Isaac 7549bb7acecfSBarry Smith Note: 75502cbb9b06SVaclav Hapla This is typically used when interpolating or otherwise adding to a mesh, or testing. 7551c58f1c22SToby Isaac 75521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode` 7553c58f1c22SToby Isaac @*/ 7554d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyLabels(DM dmA, DM dmB, PetscCopyMode mode, PetscBool all, DMCopyLabelsMode emode) 7555d71ae5a4SJacob Faibussowitsch { 75562cbb9b06SVaclav Hapla DMLabel label, labelNew, labelOld; 7557c58f1c22SToby Isaac const char *name; 7558c58f1c22SToby Isaac PetscBool flg; 75595d80c0bfSVaclav Hapla DMLabelLink link; 7560c58f1c22SToby Isaac 75615d80c0bfSVaclav Hapla PetscFunctionBegin; 75625d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 75635d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 75645d80c0bfSVaclav Hapla PetscValidLogicalCollectiveEnum(dmA, mode, 3); 75655d80c0bfSVaclav Hapla PetscValidLogicalCollectiveBool(dmA, all, 4); 75667a8be351SBarry Smith PetscCheck(mode != PETSC_USE_POINTER, PetscObjectComm((PetscObject)dmA), PETSC_ERR_SUP, "PETSC_USE_POINTER not supported for objects"); 75673ba16761SJacob Faibussowitsch if (dmA == dmB) PetscFunctionReturn(PETSC_SUCCESS); 75685d80c0bfSVaclav Hapla for (link = dmA->labels; link; link = link->next) { 75695d80c0bfSVaclav Hapla label = link->label; 75709566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 75715d80c0bfSVaclav Hapla if (!all) { 75729566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &flg)); 7573c58f1c22SToby Isaac if (flg) continue; 75749566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "dim", &flg)); 75757d5acc75SStefano Zampini if (flg) continue; 75769566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &flg)); 7577ba2698f1SMatthew G. Knepley if (flg) continue; 75785d80c0bfSVaclav Hapla } 75799566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmB, name, &labelOld)); 75802cbb9b06SVaclav Hapla if (labelOld) { 75812cbb9b06SVaclav Hapla switch (emode) { 7582d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_KEEP: 7583d71ae5a4SJacob Faibussowitsch continue; 7584d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_REPLACE: 7585d71ae5a4SJacob Faibussowitsch PetscCall(DMRemoveLabelBySelf(dmB, &labelOld, PETSC_TRUE)); 7586d71ae5a4SJacob Faibussowitsch break; 7587d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_FAIL: 7588d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in destination DM", name); 7589d71ae5a4SJacob Faibussowitsch default: 7590d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Unhandled DMCopyLabelsMode %d", (int)emode); 75912cbb9b06SVaclav Hapla } 75922cbb9b06SVaclav Hapla } 75935d80c0bfSVaclav Hapla if (mode == PETSC_COPY_VALUES) { 75949566063dSJacob Faibussowitsch PetscCall(DMLabelDuplicate(label, &labelNew)); 75955d80c0bfSVaclav Hapla } else { 75965d80c0bfSVaclav Hapla labelNew = label; 75975d80c0bfSVaclav Hapla } 75989566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dmB, labelNew)); 75999566063dSJacob Faibussowitsch if (mode == PETSC_COPY_VALUES) PetscCall(DMLabelDestroy(&labelNew)); 7600c58f1c22SToby Isaac } 76013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7602c58f1c22SToby Isaac } 7603461a15a0SLisandro Dalcin 7604609dae6eSVaclav Hapla /*@C 7605b4028c23SStefano Zampini DMCompareLabels - Compare labels between two `DM` objects 7606609dae6eSVaclav Hapla 760720f4b53cSBarry Smith Collective; No Fortran Support 7608609dae6eSVaclav Hapla 7609609dae6eSVaclav Hapla Input Parameters: 7610bb7acecfSBarry Smith + dm0 - First `DM` object 7611bb7acecfSBarry Smith - dm1 - Second `DM` object 7612609dae6eSVaclav Hapla 7613a4e35b19SJacob Faibussowitsch Output Parameters: 7614ce78bad3SBarry Smith + equal - (Optional) Flag whether labels of `dm0` and `dm1` are the same 761520f4b53cSBarry Smith - message - (Optional) Message describing the difference, or `NULL` if there is no difference 7616609dae6eSVaclav Hapla 7617609dae6eSVaclav Hapla Level: intermediate 7618609dae6eSVaclav Hapla 7619609dae6eSVaclav Hapla Notes: 7620bb7acecfSBarry Smith The output flag equal will be the same on all processes. 7621bb7acecfSBarry Smith 762220f4b53cSBarry Smith If equal is passed as `NULL` and difference is found, an error is thrown on all processes. 7623bb7acecfSBarry Smith 762420f4b53cSBarry Smith Make sure to pass equal is `NULL` on all processes or none of them. 7625609dae6eSVaclav Hapla 76265efe38ccSVaclav Hapla The output message is set independently on each rank. 7627bb7acecfSBarry Smith 7628bb7acecfSBarry Smith message must be freed with `PetscFree()` 7629bb7acecfSBarry Smith 7630ce78bad3SBarry Smith If message is passed as `NULL` and a difference is found, the difference description is printed to `stderr` in synchronized manner. 7631bb7acecfSBarry Smith 763220f4b53cSBarry Smith Make sure to pass message as `NULL` on all processes or no processes. 7633609dae6eSVaclav Hapla 7634609dae6eSVaclav Hapla Labels are matched by name. If the number of labels and their names are equal, 7635bb7acecfSBarry Smith `DMLabelCompare()` is used to compare each pair of labels with the same name. 7636609dae6eSVaclav Hapla 7637cc4c1da9SBarry Smith Developer Note: 7638ce78bad3SBarry Smith Cannot automatically generate the Fortran stub because `message` must be freed with `PetscFree()` 7639cc4c1da9SBarry Smith 76401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`, `DMLabelCompare()` 7641609dae6eSVaclav Hapla @*/ 7642ce78bad3SBarry Smith PetscErrorCode DMCompareLabels(DM dm0, DM dm1, PetscBool *equal, char *message[]) PeNS 7643d71ae5a4SJacob Faibussowitsch { 76445efe38ccSVaclav Hapla PetscInt n, i; 7645609dae6eSVaclav Hapla char msg[PETSC_MAX_PATH_LEN] = ""; 76465efe38ccSVaclav Hapla PetscBool eq; 7647609dae6eSVaclav Hapla MPI_Comm comm; 76485efe38ccSVaclav Hapla PetscMPIInt rank; 7649609dae6eSVaclav Hapla 7650609dae6eSVaclav Hapla PetscFunctionBegin; 7651609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm0, DM_CLASSID, 1); 7652609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm1, DM_CLASSID, 2); 7653609dae6eSVaclav Hapla PetscCheckSameComm(dm0, 1, dm1, 2); 76544f572ea9SToby Isaac if (equal) PetscAssertPointer(equal, 3); 76554f572ea9SToby Isaac if (message) PetscAssertPointer(message, 4); 76569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm0, &comm)); 76579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 76585efe38ccSVaclav Hapla { 76595efe38ccSVaclav Hapla PetscInt n1; 76605efe38ccSVaclav Hapla 76619566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm0, &n)); 76629566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm1, &n1)); 76635efe38ccSVaclav Hapla eq = (PetscBool)(n == n1); 766448a46eb9SPierre Jolivet if (!eq) PetscCall(PetscSNPrintf(msg, sizeof(msg), "Number of labels in dm0 = %" PetscInt_FMT " != %" PetscInt_FMT " = Number of labels in dm1", n, n1)); 7665462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 76665efe38ccSVaclav Hapla if (!eq) goto finish; 76675efe38ccSVaclav Hapla } 76685efe38ccSVaclav Hapla for (i = 0; i < n; i++) { 7669609dae6eSVaclav Hapla DMLabel l0, l1; 7670609dae6eSVaclav Hapla const char *name; 7671609dae6eSVaclav Hapla char *msgInner; 7672609dae6eSVaclav Hapla 7673609dae6eSVaclav Hapla /* Ignore label order */ 76749566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm0, i, &l0)); 76759566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)l0, &name)); 76769566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm1, name, &l1)); 7677609dae6eSVaclav Hapla if (!l1) { 767863a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(msg, sizeof(msg), "Label \"%s\" (#%" PetscInt_FMT " in dm0) not found in dm1", name, i)); 76795efe38ccSVaclav Hapla eq = PETSC_FALSE; 76805efe38ccSVaclav Hapla break; 7681609dae6eSVaclav Hapla } 76829566063dSJacob Faibussowitsch PetscCall(DMLabelCompare(comm, l0, l1, &eq, &msgInner)); 76839566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(msg, msgInner, sizeof(msg))); 76849566063dSJacob Faibussowitsch PetscCall(PetscFree(msgInner)); 76855efe38ccSVaclav Hapla if (!eq) break; 7686609dae6eSVaclav Hapla } 7687462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 7688609dae6eSVaclav Hapla finish: 76895efe38ccSVaclav Hapla /* If message output arg not set, print to stderr */ 7690609dae6eSVaclav Hapla if (message) { 7691609dae6eSVaclav Hapla *message = NULL; 769248a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscStrallocpy(msg, message)); 76935efe38ccSVaclav Hapla } else { 769448a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscSynchronizedFPrintf(comm, PETSC_STDERR, "[%d] %s\n", rank, msg)); 76959566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, PETSC_STDERR)); 76965efe38ccSVaclav Hapla } 76975efe38ccSVaclav Hapla /* If same output arg not ser and labels are not equal, throw error */ 76985efe38ccSVaclav Hapla if (equal) *equal = eq; 76997a8be351SBarry Smith else PetscCheck(eq, comm, PETSC_ERR_ARG_INCOMP, "DMLabels are not the same in dm0 and dm1"); 77003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7701609dae6eSVaclav Hapla } 7702609dae6eSVaclav Hapla 7703d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue_Fast(DM dm, DMLabel *label, const char name[], PetscInt point, PetscInt value) 7704d71ae5a4SJacob Faibussowitsch { 7705461a15a0SLisandro Dalcin PetscFunctionBegin; 77064f572ea9SToby Isaac PetscAssertPointer(label, 2); 7707461a15a0SLisandro Dalcin if (!*label) { 77089566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 77099566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, label)); 7710461a15a0SLisandro Dalcin } 77119566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(*label, point, value)); 77123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7713461a15a0SLisandro Dalcin } 7714461a15a0SLisandro Dalcin 77150fdc7489SMatthew Knepley /* 77160fdc7489SMatthew Knepley Many mesh programs, such as Triangle and TetGen, allow only a single label for each mesh point. Therefore, we would 77170fdc7489SMatthew Knepley like to encode all label IDs using a single, universal label. We can do this by assigning an integer to every 77180fdc7489SMatthew Knepley (label, id) pair in the DM. 77190fdc7489SMatthew Knepley 77200fdc7489SMatthew Knepley However, a mesh point can have multiple labels, so we must separate all these values. We will assign a bit range to 77210fdc7489SMatthew Knepley each label. 77220fdc7489SMatthew Knepley */ 7723d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreate(DM dm, DMUniversalLabel *universal) 7724d71ae5a4SJacob Faibussowitsch { 77250fdc7489SMatthew Knepley DMUniversalLabel ul; 77260fdc7489SMatthew Knepley PetscBool *active; 77270fdc7489SMatthew Knepley PetscInt pStart, pEnd, p, Nl, l, m; 77280fdc7489SMatthew Knepley 77290fdc7489SMatthew Knepley PetscFunctionBegin; 77309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &ul)); 77319566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "universal", &ul->label)); 77329566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 77339566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Nl, &active)); 77340fdc7489SMatthew Knepley ul->Nl = 0; 77350fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 77360fdc7489SMatthew Knepley PetscBool isdepth, iscelltype; 77370fdc7489SMatthew Knepley const char *name; 77380fdc7489SMatthew Knepley 77399566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 77409566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "depth", 6, &isdepth)); 77419566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "celltype", 9, &iscelltype)); 77420fdc7489SMatthew Knepley active[l] = !(isdepth || iscelltype) ? PETSC_TRUE : PETSC_FALSE; 77430fdc7489SMatthew Knepley if (active[l]) ++ul->Nl; 77440fdc7489SMatthew Knepley } 77459566063dSJacob Faibussowitsch PetscCall(PetscCalloc5(ul->Nl, &ul->names, ul->Nl, &ul->indices, ul->Nl + 1, &ul->offsets, ul->Nl + 1, &ul->bits, ul->Nl, &ul->masks)); 77460fdc7489SMatthew Knepley ul->Nv = 0; 77470fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 77480fdc7489SMatthew Knepley DMLabel label; 77490fdc7489SMatthew Knepley PetscInt nv; 77500fdc7489SMatthew Knepley const char *name; 77510fdc7489SMatthew Knepley 77520fdc7489SMatthew Knepley if (!active[l]) continue; 77539566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 77549566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 77559566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 77569566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(name, &ul->names[m])); 77570fdc7489SMatthew Knepley ul->indices[m] = l; 77580fdc7489SMatthew Knepley ul->Nv += nv; 77590fdc7489SMatthew Knepley ul->offsets[m + 1] = nv; 77600fdc7489SMatthew Knepley ul->bits[m + 1] = PetscCeilReal(PetscLog2Real(nv + 1)); 77610fdc7489SMatthew Knepley ++m; 77620fdc7489SMatthew Knepley } 77630fdc7489SMatthew Knepley for (l = 1; l <= ul->Nl; ++l) { 77640fdc7489SMatthew Knepley ul->offsets[l] = ul->offsets[l - 1] + ul->offsets[l]; 77650fdc7489SMatthew Knepley ul->bits[l] = ul->bits[l - 1] + ul->bits[l]; 77660fdc7489SMatthew Knepley } 77670fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 77680fdc7489SMatthew Knepley PetscInt b; 77690fdc7489SMatthew Knepley 77700fdc7489SMatthew Knepley ul->masks[l] = 0; 77710fdc7489SMatthew Knepley for (b = ul->bits[l]; b < ul->bits[l + 1]; ++b) ul->masks[l] |= 1 << b; 77720fdc7489SMatthew Knepley } 77739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ul->Nv, &ul->values)); 77740fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 77750fdc7489SMatthew Knepley DMLabel label; 77760fdc7489SMatthew Knepley IS valueIS; 77770fdc7489SMatthew Knepley const PetscInt *varr; 77780fdc7489SMatthew Knepley PetscInt nv, v; 77790fdc7489SMatthew Knepley 77800fdc7489SMatthew Knepley if (!active[l]) continue; 77819566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 77829566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 77839566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 77849566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &varr)); 7785ad540459SPierre Jolivet for (v = 0; v < nv; ++v) ul->values[ul->offsets[m] + v] = varr[v]; 77869566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &varr)); 77879566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 77889566063dSJacob Faibussowitsch PetscCall(PetscSortInt(nv, &ul->values[ul->offsets[m]])); 77890fdc7489SMatthew Knepley ++m; 77900fdc7489SMatthew Knepley } 77919566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 77920fdc7489SMatthew Knepley for (p = pStart; p < pEnd; ++p) { 77930fdc7489SMatthew Knepley PetscInt uval = 0; 77940fdc7489SMatthew Knepley PetscBool marked = PETSC_FALSE; 77950fdc7489SMatthew Knepley 77960fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 77970fdc7489SMatthew Knepley DMLabel label; 77980649b39aSStefano Zampini PetscInt val, defval, loc, nv; 77990fdc7489SMatthew Knepley 78000fdc7489SMatthew Knepley if (!active[l]) continue; 78019566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 78029566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, p, &val)); 78039566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defval)); 78049371c9d4SSatish Balay if (val == defval) { 78059371c9d4SSatish Balay ++m; 78069371c9d4SSatish Balay continue; 78079371c9d4SSatish Balay } 78080649b39aSStefano Zampini nv = ul->offsets[m + 1] - ul->offsets[m]; 78090fdc7489SMatthew Knepley marked = PETSC_TRUE; 78109566063dSJacob Faibussowitsch PetscCall(PetscFindInt(val, nv, &ul->values[ul->offsets[m]], &loc)); 781163a3b9bcSJacob Faibussowitsch PetscCheck(loc >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Label value %" PetscInt_FMT " not found in compression array", val); 78120fdc7489SMatthew Knepley uval += (loc + 1) << ul->bits[m]; 78130fdc7489SMatthew Knepley ++m; 78140fdc7489SMatthew Knepley } 78159566063dSJacob Faibussowitsch if (marked) PetscCall(DMLabelSetValue(ul->label, p, uval)); 78160fdc7489SMatthew Knepley } 78179566063dSJacob Faibussowitsch PetscCall(PetscFree(active)); 78180fdc7489SMatthew Knepley *universal = ul; 78193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78200fdc7489SMatthew Knepley } 78210fdc7489SMatthew Knepley 7822d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelDestroy(DMUniversalLabel *universal) 7823d71ae5a4SJacob Faibussowitsch { 78240fdc7489SMatthew Knepley PetscInt l; 78250fdc7489SMatthew Knepley 78260fdc7489SMatthew Knepley PetscFunctionBegin; 78279566063dSJacob Faibussowitsch for (l = 0; l < (*universal)->Nl; ++l) PetscCall(PetscFree((*universal)->names[l])); 78289566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&(*universal)->label)); 78299566063dSJacob Faibussowitsch PetscCall(PetscFree5((*universal)->names, (*universal)->indices, (*universal)->offsets, (*universal)->bits, (*universal)->masks)); 78309566063dSJacob Faibussowitsch PetscCall(PetscFree((*universal)->values)); 78319566063dSJacob Faibussowitsch PetscCall(PetscFree(*universal)); 78320fdc7489SMatthew Knepley *universal = NULL; 78333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78340fdc7489SMatthew Knepley } 78350fdc7489SMatthew Knepley 7836d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelGetLabel(DMUniversalLabel ul, DMLabel *ulabel) 7837d71ae5a4SJacob Faibussowitsch { 78380fdc7489SMatthew Knepley PetscFunctionBegin; 78394f572ea9SToby Isaac PetscAssertPointer(ulabel, 2); 78400fdc7489SMatthew Knepley *ulabel = ul->label; 78413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78420fdc7489SMatthew Knepley } 78430fdc7489SMatthew Knepley 7844d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreateLabels(DMUniversalLabel ul, PetscBool preserveOrder, DM dm) 7845d71ae5a4SJacob Faibussowitsch { 78460fdc7489SMatthew Knepley PetscInt Nl = ul->Nl, l; 78470fdc7489SMatthew Knepley 78480fdc7489SMatthew Knepley PetscFunctionBegin; 7849064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dm, DM_CLASSID, 3); 78500fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 78519566063dSJacob Faibussowitsch if (preserveOrder) PetscCall(DMCreateLabelAtIndex(dm, ul->indices[l], ul->names[l])); 78529566063dSJacob Faibussowitsch else PetscCall(DMCreateLabel(dm, ul->names[l])); 78530fdc7489SMatthew Knepley } 78540fdc7489SMatthew Knepley if (preserveOrder) { 78550fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 78560fdc7489SMatthew Knepley const char *name; 78570fdc7489SMatthew Knepley PetscBool match; 78580fdc7489SMatthew Knepley 78599566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, ul->indices[l], &name)); 78609566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, ul->names[l], &match)); 786163a3b9bcSJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Label %" PetscInt_FMT " name %s does not match new name %s", l, name, ul->names[l]); 78620fdc7489SMatthew Knepley } 78630fdc7489SMatthew Knepley } 78643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78650fdc7489SMatthew Knepley } 78660fdc7489SMatthew Knepley 7867d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelSetLabelValue(DMUniversalLabel ul, DM dm, PetscBool useIndex, PetscInt p, PetscInt value) 7868d71ae5a4SJacob Faibussowitsch { 78690fdc7489SMatthew Knepley PetscInt l; 78700fdc7489SMatthew Knepley 78710fdc7489SMatthew Knepley PetscFunctionBegin; 78720fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 78730fdc7489SMatthew Knepley DMLabel label; 78740fdc7489SMatthew Knepley PetscInt lval = (value & ul->masks[l]) >> ul->bits[l]; 78750fdc7489SMatthew Knepley 78760fdc7489SMatthew Knepley if (lval) { 78779566063dSJacob Faibussowitsch if (useIndex) PetscCall(DMGetLabelByNum(dm, ul->indices[l], &label)); 78789566063dSJacob Faibussowitsch else PetscCall(DMGetLabel(dm, ul->names[l], &label)); 78799566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, ul->values[ul->offsets[l] + lval - 1])); 78800fdc7489SMatthew Knepley } 78810fdc7489SMatthew Knepley } 78823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78830fdc7489SMatthew Knepley } 7884a8fb8f29SToby Isaac 7885a8fb8f29SToby Isaac /*@ 7886bb7acecfSBarry Smith DMGetCoarseDM - Get the coarse `DM`from which this `DM` was obtained by refinement 7887bb7acecfSBarry Smith 788820f4b53cSBarry Smith Not Collective 7889a8fb8f29SToby Isaac 7890a8fb8f29SToby Isaac Input Parameter: 7891bb7acecfSBarry Smith . dm - The `DM` object 7892a8fb8f29SToby Isaac 7893a8fb8f29SToby Isaac Output Parameter: 7894bb7acecfSBarry Smith . cdm - The coarse `DM` 7895a8fb8f29SToby Isaac 7896a8fb8f29SToby Isaac Level: intermediate 7897a8fb8f29SToby Isaac 78981cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetCoarseDM()`, `DMCoarsen()` 7899a8fb8f29SToby Isaac @*/ 7900d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarseDM(DM dm, DM *cdm) 7901d71ae5a4SJacob Faibussowitsch { 7902a8fb8f29SToby Isaac PetscFunctionBegin; 7903a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 79044f572ea9SToby Isaac PetscAssertPointer(cdm, 2); 7905a8fb8f29SToby Isaac *cdm = dm->coarseMesh; 79063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7907a8fb8f29SToby Isaac } 7908a8fb8f29SToby Isaac 7909a8fb8f29SToby Isaac /*@ 7910bb7acecfSBarry Smith DMSetCoarseDM - Set the coarse `DM` from which this `DM` was obtained by refinement 7911a8fb8f29SToby Isaac 7912a8fb8f29SToby Isaac Input Parameters: 7913bb7acecfSBarry Smith + dm - The `DM` object 7914bb7acecfSBarry Smith - cdm - The coarse `DM` 7915a8fb8f29SToby Isaac 7916a8fb8f29SToby Isaac Level: intermediate 7917a8fb8f29SToby Isaac 7918bb7acecfSBarry Smith Note: 7919bb7acecfSBarry Smith Normally this is set automatically by `DMRefine()` 7920bb7acecfSBarry Smith 79211cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCoarseDM()`, `DMCoarsen()`, `DMSetRefine()`, `DMSetFineDM()` 7922a8fb8f29SToby Isaac @*/ 7923d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarseDM(DM dm, DM cdm) 7924d71ae5a4SJacob Faibussowitsch { 7925a8fb8f29SToby Isaac PetscFunctionBegin; 7926a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7927a8fb8f29SToby Isaac if (cdm) PetscValidHeaderSpecific(cdm, DM_CLASSID, 2); 792889d734beSBarry Smith if (dm == cdm) cdm = NULL; 79299566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)cdm)); 79309566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->coarseMesh)); 7931a8fb8f29SToby Isaac dm->coarseMesh = cdm; 79323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7933a8fb8f29SToby Isaac } 7934a8fb8f29SToby Isaac 793588bdff64SToby Isaac /*@ 7936bb7acecfSBarry Smith DMGetFineDM - Get the fine mesh from which this `DM` was obtained by coarsening 793788bdff64SToby Isaac 793888bdff64SToby Isaac Input Parameter: 7939bb7acecfSBarry Smith . dm - The `DM` object 794088bdff64SToby Isaac 794188bdff64SToby Isaac Output Parameter: 7942bb7acecfSBarry Smith . fdm - The fine `DM` 794388bdff64SToby Isaac 794488bdff64SToby Isaac Level: intermediate 794588bdff64SToby Isaac 79461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetFineDM()`, `DMCoarsen()`, `DMRefine()` 794788bdff64SToby Isaac @*/ 7948d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFineDM(DM dm, DM *fdm) 7949d71ae5a4SJacob Faibussowitsch { 795088bdff64SToby Isaac PetscFunctionBegin; 795188bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 79524f572ea9SToby Isaac PetscAssertPointer(fdm, 2); 795388bdff64SToby Isaac *fdm = dm->fineMesh; 79543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 795588bdff64SToby Isaac } 795688bdff64SToby Isaac 795788bdff64SToby Isaac /*@ 7958bb7acecfSBarry Smith DMSetFineDM - Set the fine mesh from which this was obtained by coarsening 795988bdff64SToby Isaac 796088bdff64SToby Isaac Input Parameters: 7961bb7acecfSBarry Smith + dm - The `DM` object 7962bb7acecfSBarry Smith - fdm - The fine `DM` 796388bdff64SToby Isaac 7964bb7acecfSBarry Smith Level: developer 796588bdff64SToby Isaac 7966bb7acecfSBarry Smith Note: 7967bb7acecfSBarry Smith Normally this is set automatically by `DMCoarsen()` 7968bb7acecfSBarry Smith 79691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFineDM()`, `DMCoarsen()`, `DMRefine()` 797088bdff64SToby Isaac @*/ 7971d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFineDM(DM dm, DM fdm) 7972d71ae5a4SJacob Faibussowitsch { 797388bdff64SToby Isaac PetscFunctionBegin; 797488bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 797588bdff64SToby Isaac if (fdm) PetscValidHeaderSpecific(fdm, DM_CLASSID, 2); 797689d734beSBarry Smith if (dm == fdm) fdm = NULL; 79779566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fdm)); 79789566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->fineMesh)); 797988bdff64SToby Isaac dm->fineMesh = fdm; 79803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 798188bdff64SToby Isaac } 798288bdff64SToby Isaac 7983a6ba4734SToby Isaac /*@C 7984bb7acecfSBarry Smith DMAddBoundary - Add a boundary condition to a model represented by a `DM` 7985a6ba4734SToby Isaac 798620f4b53cSBarry Smith Collective 7987783e2ec8SMatthew G. Knepley 7988a6ba4734SToby Isaac Input Parameters: 7989bb7acecfSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 7990bb7acecfSBarry Smith . type - The type of condition, e.g. `DM_BC_ESSENTIAL_ANALYTIC`, `DM_BC_ESSENTIAL_FIELD` (Dirichlet), or `DM_BC_NATURAL` (Neumann) 7991a6ba4734SToby Isaac . name - The BC name 799245480ffeSMatthew G. Knepley . label - The label defining constrained points 7993bb7acecfSBarry Smith . Nv - The number of `DMLabel` values for constrained points 799445480ffeSMatthew G. Knepley . values - An array of values for constrained points 7995a6ba4734SToby Isaac . field - The field to constrain 7996258f4e96SStefano Zampini . Nc - The number of constrained field components (0 will constrain all components) 7997a6ba4734SToby Isaac . comps - An array of constrained component numbers 7998a6ba4734SToby Isaac . bcFunc - A pointwise function giving boundary values 799956cf3b9cSMatthew G. Knepley . bcFunc_t - A pointwise function giving the time deriative of the boundary values, or NULL 8000a6ba4734SToby Isaac - ctx - An optional user context for bcFunc 8001a6ba4734SToby Isaac 800245480ffeSMatthew G. Knepley Output Parameter: 800345480ffeSMatthew G. Knepley . bd - (Optional) Boundary number 800445480ffeSMatthew G. Knepley 8005a6ba4734SToby Isaac Options Database Keys: 8006a6ba4734SToby Isaac + -bc_<boundary name> <num> - Overrides the boundary ids 8007a6ba4734SToby Isaac - -bc_<boundary name>_comp <num> - Overrides the boundary components 8008a6ba4734SToby Isaac 800920f4b53cSBarry Smith Level: intermediate 801020f4b53cSBarry Smith 8011bb7acecfSBarry Smith Notes: 8012fa74d514SMatthew G. Knepley If the `DM` is of type `DMPLEX` and the field is of type `PetscFE`, then this function completes the label using `DMPlexLabelComplete()`. 8013fa74d514SMatthew G. Knepley 8014aeebefc2SPierre Jolivet Both bcFunc and bcFunc_t will depend on the boundary condition type. If the type if `DM_BC_ESSENTIAL`, then the calling sequence is\: 801573ff1848SBarry Smith .vb 801673ff1848SBarry Smith void bcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[]) 801773ff1848SBarry Smith .ve 801856cf3b9cSMatthew G. Knepley 8019a4e35b19SJacob Faibussowitsch If the type is `DM_BC_ESSENTIAL_FIELD` or other _FIELD value, then the calling sequence is\: 802056cf3b9cSMatthew G. Knepley 802120f4b53cSBarry Smith .vb 802220f4b53cSBarry Smith void bcFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux, 802320f4b53cSBarry Smith const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 802420f4b53cSBarry Smith const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 802520f4b53cSBarry Smith PetscReal time, const PetscReal x[], PetscScalar bcval[]) 802620f4b53cSBarry Smith .ve 802756cf3b9cSMatthew G. Knepley + dim - the spatial dimension 802856cf3b9cSMatthew G. Knepley . Nf - the number of fields 802956cf3b9cSMatthew G. Knepley . uOff - the offset into u[] and u_t[] for each field 803056cf3b9cSMatthew G. Knepley . uOff_x - the offset into u_x[] for each field 803156cf3b9cSMatthew G. Knepley . u - each field evaluated at the current point 803256cf3b9cSMatthew G. Knepley . u_t - the time derivative of each field evaluated at the current point 803356cf3b9cSMatthew G. Knepley . u_x - the gradient of each field evaluated at the current point 803456cf3b9cSMatthew G. Knepley . aOff - the offset into a[] and a_t[] for each auxiliary field 803556cf3b9cSMatthew G. Knepley . aOff_x - the offset into a_x[] for each auxiliary field 803656cf3b9cSMatthew G. Knepley . a - each auxiliary field evaluated at the current point 803756cf3b9cSMatthew G. Knepley . a_t - the time derivative of each auxiliary field evaluated at the current point 803856cf3b9cSMatthew G. Knepley . a_x - the gradient of auxiliary each field evaluated at the current point 803956cf3b9cSMatthew G. Knepley . t - current time 804056cf3b9cSMatthew G. Knepley . x - coordinates of the current point 804156cf3b9cSMatthew G. Knepley . numConstants - number of constant parameters 804256cf3b9cSMatthew G. Knepley . constants - constant parameters 804356cf3b9cSMatthew G. Knepley - bcval - output values at the current point 804456cf3b9cSMatthew G. Knepley 80451cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DSGetBoundary()`, `PetscDSAddBoundary()` 8046a6ba4734SToby Isaac @*/ 8047d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddBoundary(DM dm, DMBoundaryConditionType type, const char name[], DMLabel label, PetscInt Nv, const PetscInt values[], PetscInt field, PetscInt Nc, const PetscInt comps[], void (*bcFunc)(void), void (*bcFunc_t)(void), void *ctx, PetscInt *bd) 8048d71ae5a4SJacob Faibussowitsch { 8049e5e52638SMatthew G. Knepley PetscDS ds; 8050a6ba4734SToby Isaac 8051a6ba4734SToby Isaac PetscFunctionBegin; 8052a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8053783e2ec8SMatthew G. Knepley PetscValidLogicalCollectiveEnum(dm, type, 2); 805445480ffeSMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 4); 805545480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nv, 5); 805645480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, field, 7); 805745480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 8); 805801a5d20dSJed Brown PetscCheck(!dm->localSection, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot add boundary to DM after creating local section"); 80599566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 8060799db056SMatthew G. Knepley /* Complete label */ 8061799db056SMatthew G. Knepley if (label) { 8062799db056SMatthew G. Knepley PetscObject obj; 8063799db056SMatthew G. Knepley PetscClassId id; 8064799db056SMatthew G. Knepley 8065799db056SMatthew G. Knepley PetscCall(DMGetField(dm, field, NULL, &obj)); 8066799db056SMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 8067799db056SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 8068799db056SMatthew G. Knepley DM plex; 8069799db056SMatthew G. Knepley 8070799db056SMatthew G. Knepley PetscCall(DMConvert(dm, DMPLEX, &plex)); 8071799db056SMatthew G. Knepley if (plex) PetscCall(DMPlexLabelComplete(plex, label)); 8072799db056SMatthew G. Knepley PetscCall(DMDestroy(&plex)); 8073799db056SMatthew G. Knepley } 8074799db056SMatthew G. Knepley } 80759566063dSJacob Faibussowitsch PetscCall(PetscDSAddBoundary(ds, type, name, label, Nv, values, field, Nc, comps, bcFunc, bcFunc_t, ctx, bd)); 80763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8077a6ba4734SToby Isaac } 8078a6ba4734SToby Isaac 807945480ffeSMatthew G. Knepley /* TODO Remove this since now the structures are the same */ 8080d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPopulateBoundary(DM dm) 8081d71ae5a4SJacob Faibussowitsch { 8082e5e52638SMatthew G. Knepley PetscDS ds; 8083dff059c6SToby Isaac DMBoundary *lastnext; 8084e6f8dbb6SToby Isaac DSBoundary dsbound; 8085e6f8dbb6SToby Isaac 8086e6f8dbb6SToby Isaac PetscFunctionBegin; 80879566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 8088e5e52638SMatthew G. Knepley dsbound = ds->boundary; 808947a1f5adSToby Isaac if (dm->boundary) { 809047a1f5adSToby Isaac DMBoundary next = dm->boundary; 809147a1f5adSToby Isaac 809247a1f5adSToby Isaac /* quick check to see if the PetscDS has changed */ 80933ba16761SJacob Faibussowitsch if (next->dsboundary == dsbound) PetscFunctionReturn(PETSC_SUCCESS); 809447a1f5adSToby Isaac /* the PetscDS has changed: tear down and rebuild */ 809547a1f5adSToby Isaac while (next) { 809647a1f5adSToby Isaac DMBoundary b = next; 809747a1f5adSToby Isaac 809847a1f5adSToby Isaac next = b->next; 80999566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 8100a6ba4734SToby Isaac } 810147a1f5adSToby Isaac dm->boundary = NULL; 8102a6ba4734SToby Isaac } 810347a1f5adSToby Isaac 8104f4f49eeaSPierre Jolivet lastnext = &dm->boundary; 8105e6f8dbb6SToby Isaac while (dsbound) { 8106e6f8dbb6SToby Isaac DMBoundary dmbound; 8107e6f8dbb6SToby Isaac 81089566063dSJacob Faibussowitsch PetscCall(PetscNew(&dmbound)); 8109e6f8dbb6SToby Isaac dmbound->dsboundary = dsbound; 811045480ffeSMatthew G. Knepley dmbound->label = dsbound->label; 811147a1f5adSToby Isaac /* push on the back instead of the front so that it is in the same order as in the PetscDS */ 8112dff059c6SToby Isaac *lastnext = dmbound; 8113f4f49eeaSPierre Jolivet lastnext = &dmbound->next; 8114dff059c6SToby Isaac dsbound = dsbound->next; 8115a6ba4734SToby Isaac } 81163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8117a6ba4734SToby Isaac } 8118a6ba4734SToby Isaac 8119bb7acecfSBarry Smith /* TODO: missing manual page */ 8120d71ae5a4SJacob Faibussowitsch PetscErrorCode DMIsBoundaryPoint(DM dm, PetscInt point, PetscBool *isBd) 8121d71ae5a4SJacob Faibussowitsch { 8122b95f2879SToby Isaac DMBoundary b; 8123a6ba4734SToby Isaac 8124a6ba4734SToby Isaac PetscFunctionBegin; 8125a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 81264f572ea9SToby Isaac PetscAssertPointer(isBd, 3); 8127a6ba4734SToby Isaac *isBd = PETSC_FALSE; 81289566063dSJacob Faibussowitsch PetscCall(DMPopulateBoundary(dm)); 8129b95f2879SToby Isaac b = dm->boundary; 813057508eceSPierre Jolivet while (b && !*isBd) { 8131e6f8dbb6SToby Isaac DMLabel label = b->label; 8132e6f8dbb6SToby Isaac DSBoundary dsb = b->dsboundary; 8133a6ba4734SToby Isaac PetscInt i; 8134a6ba4734SToby Isaac 813545480ffeSMatthew G. Knepley if (label) { 813657508eceSPierre Jolivet for (i = 0; i < dsb->Nv && !*isBd; ++i) PetscCall(DMLabelStratumHasPoint(label, dsb->values[i], point, isBd)); 8137a6ba4734SToby Isaac } 8138a6ba4734SToby Isaac b = b->next; 8139a6ba4734SToby Isaac } 81403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8141a6ba4734SToby Isaac } 81424d6f44ffSToby Isaac 814301468941SMatthew G. Knepley /*@ 814401468941SMatthew G. Knepley DMHasBound - Determine whether a bound condition was specified 814501468941SMatthew G. Knepley 814601468941SMatthew G. Knepley Logically collective 814701468941SMatthew G. Knepley 814801468941SMatthew G. Knepley Input Parameter: 814901468941SMatthew G. Knepley . dm - The `DM`, with a `PetscDS` that matches the problem being constrained 815001468941SMatthew G. Knepley 815101468941SMatthew G. Knepley Output Parameter: 815201468941SMatthew G. Knepley . hasBound - Flag indicating if a bound condition was specified 815301468941SMatthew G. Knepley 815401468941SMatthew G. Knepley Level: intermediate 815501468941SMatthew G. Knepley 815601468941SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DSAddBoundary()`, `PetscDSAddBoundary()` 815701468941SMatthew G. Knepley @*/ 815801468941SMatthew G. Knepley PetscErrorCode DMHasBound(DM dm, PetscBool *hasBound) 815901468941SMatthew G. Knepley { 816001468941SMatthew G. Knepley PetscDS ds; 816101468941SMatthew G. Knepley PetscInt Nf, numBd; 816201468941SMatthew G. Knepley 816301468941SMatthew G. Knepley PetscFunctionBegin; 816401468941SMatthew G. Knepley *hasBound = PETSC_FALSE; 816501468941SMatthew G. Knepley PetscCall(DMGetDS(dm, &ds)); 816601468941SMatthew G. Knepley PetscCall(PetscDSGetNumFields(ds, &Nf)); 816701468941SMatthew G. Knepley for (PetscInt f = 0; f < Nf; ++f) { 81682192575eSBarry Smith PetscSimplePointFn *lfunc, *ufunc; 816901468941SMatthew G. Knepley 817001468941SMatthew G. Knepley PetscCall(PetscDSGetLowerBound(ds, f, &lfunc, NULL)); 817101468941SMatthew G. Knepley PetscCall(PetscDSGetUpperBound(ds, f, &ufunc, NULL)); 817201468941SMatthew G. Knepley if (lfunc || ufunc) *hasBound = PETSC_TRUE; 817301468941SMatthew G. Knepley } 817401468941SMatthew G. Knepley 817501468941SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(ds, &numBd)); 817601468941SMatthew G. Knepley PetscCall(PetscDSUpdateBoundaryLabels(ds, dm)); 817701468941SMatthew G. Knepley for (PetscInt b = 0; b < numBd; ++b) { 817801468941SMatthew G. Knepley PetscWeakForm wf; 817901468941SMatthew G. Knepley DMBoundaryConditionType type; 818001468941SMatthew G. Knepley const char *name; 818101468941SMatthew G. Knepley DMLabel label; 818201468941SMatthew G. Knepley PetscInt numids; 818301468941SMatthew G. Knepley const PetscInt *ids; 818401468941SMatthew G. Knepley PetscInt field, Nc; 818501468941SMatthew G. Knepley const PetscInt *comps; 818601468941SMatthew G. Knepley void (*bvfunc)(void); 818701468941SMatthew G. Knepley void *ctx; 818801468941SMatthew G. Knepley 818901468941SMatthew G. Knepley PetscCall(PetscDSGetBoundary(ds, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, &bvfunc, NULL, &ctx)); 819001468941SMatthew G. Knepley if (type == DM_BC_LOWER_BOUND || type == DM_BC_UPPER_BOUND) *hasBound = PETSC_TRUE; 819101468941SMatthew G. Knepley } 819201468941SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 819301468941SMatthew G. Knepley } 819401468941SMatthew G. Knepley 81954d6f44ffSToby Isaac /*@C 8196bb7acecfSBarry Smith DMProjectFunction - This projects the given function into the function space provided by a `DM`, putting the coefficients in a global vector. 8197a6e0b375SMatthew G. Knepley 819820f4b53cSBarry Smith Collective 81994d6f44ffSToby Isaac 82004d6f44ffSToby Isaac Input Parameters: 8201bb7acecfSBarry Smith + dm - The `DM` 82020709b2feSToby Isaac . time - The time 82034d6f44ffSToby Isaac . funcs - The coordinate functions to evaluate, one per field 82044d6f44ffSToby Isaac . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 82054d6f44ffSToby Isaac - mode - The insertion mode for values 82064d6f44ffSToby Isaac 82074d6f44ffSToby Isaac Output Parameter: 82084d6f44ffSToby Isaac . X - vector 82094d6f44ffSToby Isaac 821020f4b53cSBarry Smith Calling sequence of `funcs`: 82114d6f44ffSToby Isaac + dim - The spatial dimension 82128ec8862eSJed Brown . time - The time at which to sample 82134d6f44ffSToby Isaac . x - The coordinates 821477b739a6SMatthew Knepley . Nc - The number of components 82154d6f44ffSToby Isaac . u - The output field values 82164d6f44ffSToby Isaac - ctx - optional user-defined function context 82174d6f44ffSToby Isaac 82184d6f44ffSToby Isaac Level: developer 82194d6f44ffSToby Isaac 8220bb7acecfSBarry Smith Developer Notes: 8221bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8222bb7acecfSBarry Smith 8223bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8224bb7acecfSBarry Smith 82251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 82264d6f44ffSToby Isaac @*/ 8227a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunction(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X) 8228d71ae5a4SJacob Faibussowitsch { 82294d6f44ffSToby Isaac Vec localX; 82304d6f44ffSToby Isaac 82314d6f44ffSToby Isaac PetscFunctionBegin; 82324d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8233708be2fdSJed Brown PetscCall(PetscLogEventBegin(DM_ProjectFunction, dm, X, 0, 0)); 82349566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 8235f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 82369566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, mode, localX)); 82379566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 82389566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 82399566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 8240708be2fdSJed Brown PetscCall(PetscLogEventEnd(DM_ProjectFunction, dm, X, 0, 0)); 82413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82424d6f44ffSToby Isaac } 82434d6f44ffSToby Isaac 8244a6e0b375SMatthew G. Knepley /*@C 8245bb7acecfSBarry Smith DMProjectFunctionLocal - This projects the given function into the function space provided by a `DM`, putting the coefficients in a local vector. 8246a6e0b375SMatthew G. Knepley 824720f4b53cSBarry Smith Not Collective 8248a6e0b375SMatthew G. Knepley 8249a6e0b375SMatthew G. Knepley Input Parameters: 8250bb7acecfSBarry Smith + dm - The `DM` 8251a6e0b375SMatthew G. Knepley . time - The time 8252a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8253a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 8254a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8255a6e0b375SMatthew G. Knepley 8256a6e0b375SMatthew G. Knepley Output Parameter: 8257a6e0b375SMatthew G. Knepley . localX - vector 8258a6e0b375SMatthew G. Knepley 825920f4b53cSBarry Smith Calling sequence of `funcs`: 8260a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8261a4e35b19SJacob Faibussowitsch . time - The current timestep 8262a6e0b375SMatthew G. Knepley . x - The coordinates 826377b739a6SMatthew Knepley . Nc - The number of components 8264a6e0b375SMatthew G. Knepley . u - The output field values 8265a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8266a6e0b375SMatthew G. Knepley 8267a6e0b375SMatthew G. Knepley Level: developer 8268a6e0b375SMatthew G. Knepley 8269bb7acecfSBarry Smith Developer Notes: 8270bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8271bb7acecfSBarry Smith 8272bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8273bb7acecfSBarry Smith 82741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 8275a6e0b375SMatthew G. Knepley @*/ 8276a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX) 8277d71ae5a4SJacob Faibussowitsch { 82784d6f44ffSToby Isaac PetscFunctionBegin; 82794d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8280064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 8281fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfunctionlocal, time, funcs, ctxs, mode, localX); 82823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82834d6f44ffSToby Isaac } 82844d6f44ffSToby Isaac 8285a6e0b375SMatthew G. Knepley /*@C 8286bb7acecfSBarry Smith DMProjectFunctionLabel - This projects the given function into the function space provided by the `DM`, putting the coefficients in a global vector, setting values only for points in the given label. 8287a6e0b375SMatthew G. Knepley 828820f4b53cSBarry Smith Collective 8289a6e0b375SMatthew G. Knepley 8290a6e0b375SMatthew G. Knepley Input Parameters: 8291bb7acecfSBarry Smith + dm - The `DM` 8292a6e0b375SMatthew G. Knepley . time - The time 8293a4e35b19SJacob Faibussowitsch . numIds - The number of ids 8294a4e35b19SJacob Faibussowitsch . ids - The ids 8295a4e35b19SJacob Faibussowitsch . Nc - The number of components 8296a4e35b19SJacob Faibussowitsch . comps - The components 8297bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8298a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8299bb7acecfSBarry Smith . ctxs - Optional array of contexts to pass to each coordinate function. ctxs may be null. 8300a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8301a6e0b375SMatthew G. Knepley 8302a6e0b375SMatthew G. Knepley Output Parameter: 8303a6e0b375SMatthew G. Knepley . X - vector 8304a6e0b375SMatthew G. Knepley 830520f4b53cSBarry Smith Calling sequence of `funcs`: 8306a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8307a4e35b19SJacob Faibussowitsch . time - The current timestep 8308a6e0b375SMatthew G. Knepley . x - The coordinates 830977b739a6SMatthew Knepley . Nc - The number of components 8310a6e0b375SMatthew G. Knepley . u - The output field values 8311a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8312a6e0b375SMatthew G. Knepley 8313a6e0b375SMatthew G. Knepley Level: developer 8314a6e0b375SMatthew G. Knepley 8315bb7acecfSBarry Smith Developer Notes: 8316bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8317bb7acecfSBarry Smith 8318bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8319bb7acecfSBarry Smith 83201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`, `DMComputeL2Diff()` 8321a6e0b375SMatthew G. Knepley @*/ 8322a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X) 8323d71ae5a4SJacob Faibussowitsch { 83242c53366bSMatthew G. Knepley Vec localX; 83252c53366bSMatthew G. Knepley 83262c53366bSMatthew G. Knepley PetscFunctionBegin; 83272c53366bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 83289566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 8329f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 83309566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX)); 83319566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 83329566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 83339566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 83343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 83352c53366bSMatthew G. Knepley } 83362c53366bSMatthew G. Knepley 8337a6e0b375SMatthew G. Knepley /*@C 8338bb7acecfSBarry Smith DMProjectFunctionLabelLocal - This projects the given function into the function space provided by the `DM`, putting the coefficients in a local vector, setting values only for points in the given label. 8339a6e0b375SMatthew G. Knepley 834020f4b53cSBarry Smith Not Collective 8341a6e0b375SMatthew G. Knepley 8342a6e0b375SMatthew G. Knepley Input Parameters: 8343bb7acecfSBarry Smith + dm - The `DM` 8344a6e0b375SMatthew G. Knepley . time - The time 8345bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8346a4e35b19SJacob Faibussowitsch . numIds - The number of ids 8347a4e35b19SJacob Faibussowitsch . ids - The ids 8348a4e35b19SJacob Faibussowitsch . Nc - The number of components 8349a4e35b19SJacob Faibussowitsch . comps - The components 8350a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8351a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 8352a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8353a6e0b375SMatthew G. Knepley 8354a6e0b375SMatthew G. Knepley Output Parameter: 8355a6e0b375SMatthew G. Knepley . localX - vector 8356a6e0b375SMatthew G. Knepley 835720f4b53cSBarry Smith Calling sequence of `funcs`: 8358a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8359a4e35b19SJacob Faibussowitsch . time - The current time 8360a6e0b375SMatthew G. Knepley . x - The coordinates 836177b739a6SMatthew Knepley . Nc - The number of components 8362a6e0b375SMatthew G. Knepley . u - The output field values 8363a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8364a6e0b375SMatthew G. Knepley 8365a6e0b375SMatthew G. Knepley Level: developer 8366a6e0b375SMatthew G. Knepley 8367bb7acecfSBarry Smith Developer Notes: 8368bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8369bb7acecfSBarry Smith 8370bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8371bb7acecfSBarry Smith 83721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 8373a6e0b375SMatthew G. Knepley @*/ 8374a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX) 8375d71ae5a4SJacob Faibussowitsch { 83764d6f44ffSToby Isaac PetscFunctionBegin; 83774d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8378064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8379fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfunctionlabellocal, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX); 83803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 83814d6f44ffSToby Isaac } 83822716604bSToby Isaac 8383a6e0b375SMatthew G. Knepley /*@C 8384bb7acecfSBarry Smith DMProjectFieldLocal - This projects the given function of the input fields into the function space provided by the `DM`, putting the coefficients in a local vector. 8385a6e0b375SMatthew G. Knepley 838620f4b53cSBarry Smith Not Collective 8387a6e0b375SMatthew G. Knepley 8388a6e0b375SMatthew G. Knepley Input Parameters: 8389bb7acecfSBarry Smith + dm - The `DM` 8390a6e0b375SMatthew G. Knepley . time - The time 839120f4b53cSBarry Smith . localU - The input field vector; may be `NULL` if projection is defined purely by coordinates 8392a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8393a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8394a6e0b375SMatthew G. Knepley 8395a6e0b375SMatthew G. Knepley Output Parameter: 8396a6e0b375SMatthew G. Knepley . localX - The output vector 8397a6e0b375SMatthew G. Knepley 839820f4b53cSBarry Smith Calling sequence of `funcs`: 8399a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8400a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8401a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8402a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8403a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8404a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8405a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8406a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8407a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8408a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8409a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8410a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8411a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8412a6e0b375SMatthew G. Knepley . t - The current time 8413a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8414a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8415a6e0b375SMatthew G. Knepley . constants - The value of each constant 8416a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8417a6e0b375SMatthew G. Knepley 841873ff1848SBarry Smith Level: intermediate 841973ff1848SBarry Smith 8420bb7acecfSBarry Smith Note: 8421bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8422bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8423bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8424a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8425a6e0b375SMatthew G. Knepley 8426bb7acecfSBarry Smith Developer Notes: 8427bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8428bb7acecfSBarry Smith 8429bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8430bb7acecfSBarry Smith 8431a4e35b19SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, 8432a4e35b19SJacob Faibussowitsch `DMProjectFunction()`, `DMComputeL2Diff()` 8433a6e0b375SMatthew G. Knepley @*/ 8434a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLocal(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8435d71ae5a4SJacob Faibussowitsch { 84368c6c5593SMatthew G. Knepley PetscFunctionBegin; 84378c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8438eb8f539aSJed Brown if (localU) PetscValidHeaderSpecific(localU, VEC_CLASSID, 3); 84398c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 8440fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfieldlocal, time, localU, funcs, mode, localX); 84413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 84428c6c5593SMatthew G. Knepley } 84438c6c5593SMatthew G. Knepley 8444a6e0b375SMatthew G. Knepley /*@C 8445a6e0b375SMatthew G. Knepley DMProjectFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain specified by the label. 8446a6e0b375SMatthew G. Knepley 844720f4b53cSBarry Smith Not Collective 8448a6e0b375SMatthew G. Knepley 8449a6e0b375SMatthew G. Knepley Input Parameters: 8450bb7acecfSBarry Smith + dm - The `DM` 8451a6e0b375SMatthew G. Knepley . time - The time 8452bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8453a6e0b375SMatthew G. Knepley . numIds - The number of label ids to use 8454a6e0b375SMatthew G. Knepley . ids - The label ids to use for marking 8455bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 845620f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8457a6e0b375SMatthew G. Knepley . localU - The input field vector 8458a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8459a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8460a6e0b375SMatthew G. Knepley 8461a6e0b375SMatthew G. Knepley Output Parameter: 8462a6e0b375SMatthew G. Knepley . localX - The output vector 8463a6e0b375SMatthew G. Knepley 846420f4b53cSBarry Smith Calling sequence of `funcs`: 8465a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8466a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8467a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8468a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8469a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8470a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8471a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8472a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8473a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8474a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8475a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8476a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8477a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8478a6e0b375SMatthew G. Knepley . t - The current time 8479a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8480a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8481a6e0b375SMatthew G. Knepley . constants - The value of each constant 8482a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8483a6e0b375SMatthew G. Knepley 848473ff1848SBarry Smith Level: intermediate 848573ff1848SBarry Smith 8486bb7acecfSBarry Smith Note: 8487bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8488bb7acecfSBarry Smith The input `DM`, attached to localU, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8489bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8490a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8491a6e0b375SMatthew G. Knepley 8492bb7acecfSBarry Smith Developer Notes: 8493bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8494bb7acecfSBarry Smith 8495bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8496bb7acecfSBarry Smith 84971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabel()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8498a6e0b375SMatthew G. Knepley @*/ 8499a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8500d71ae5a4SJacob Faibussowitsch { 85018c6c5593SMatthew G. Knepley PetscFunctionBegin; 85028c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8503064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8504064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8505fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX); 85063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 85078c6c5593SMatthew G. Knepley } 85088c6c5593SMatthew G. Knepley 85092716604bSToby Isaac /*@C 8510d29d7c6eSMatthew G. Knepley DMProjectFieldLabel - This projects the given function of the input fields into the function space provided, putting the coefficients in a global vector, calculating only over the portion of the domain specified by the label. 8511d29d7c6eSMatthew G. Knepley 851220f4b53cSBarry Smith Not Collective 8513d29d7c6eSMatthew G. Knepley 8514d29d7c6eSMatthew G. Knepley Input Parameters: 8515bb7acecfSBarry Smith + dm - The `DM` 8516d29d7c6eSMatthew G. Knepley . time - The time 8517bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8518d29d7c6eSMatthew G. Knepley . numIds - The number of label ids to use 8519d29d7c6eSMatthew G. Knepley . ids - The label ids to use for marking 8520bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 852120f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8522d29d7c6eSMatthew G. Knepley . U - The input field vector 8523d29d7c6eSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8524d29d7c6eSMatthew G. Knepley - mode - The insertion mode for values 8525d29d7c6eSMatthew G. Knepley 8526d29d7c6eSMatthew G. Knepley Output Parameter: 8527d29d7c6eSMatthew G. Knepley . X - The output vector 8528d29d7c6eSMatthew G. Knepley 852920f4b53cSBarry Smith Calling sequence of `funcs`: 8530d29d7c6eSMatthew G. Knepley + dim - The spatial dimension 8531d29d7c6eSMatthew G. Knepley . Nf - The number of input fields 8532d29d7c6eSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8533d29d7c6eSMatthew G. Knepley . uOff - The offset of each field in u[] 8534d29d7c6eSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8535d29d7c6eSMatthew G. Knepley . u - The field values at this point in space 8536d29d7c6eSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8537d29d7c6eSMatthew G. Knepley . u_x - The field derivatives at this point in space 8538d29d7c6eSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8539d29d7c6eSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8540d29d7c6eSMatthew G. Knepley . a - The auxiliary field values at this point in space 8541d29d7c6eSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8542d29d7c6eSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8543d29d7c6eSMatthew G. Knepley . t - The current time 8544d29d7c6eSMatthew G. Knepley . x - The coordinates of this point 8545d29d7c6eSMatthew G. Knepley . numConstants - The number of constants 8546d29d7c6eSMatthew G. Knepley . constants - The value of each constant 8547d29d7c6eSMatthew G. Knepley - f - The value of the function at this point in space 8548d29d7c6eSMatthew G. Knepley 854973ff1848SBarry Smith Level: intermediate 855073ff1848SBarry Smith 8551bb7acecfSBarry Smith Note: 8552bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8553bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8554bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8555d29d7c6eSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8556d29d7c6eSMatthew G. Knepley 8557bb7acecfSBarry Smith Developer Notes: 8558bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8559bb7acecfSBarry Smith 8560bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8561bb7acecfSBarry Smith 85621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8563d29d7c6eSMatthew G. Knepley @*/ 8564a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec U, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec X) 8565d71ae5a4SJacob Faibussowitsch { 8566d29d7c6eSMatthew G. Knepley DM dmIn; 8567d29d7c6eSMatthew G. Knepley Vec localU, localX; 8568d29d7c6eSMatthew G. Knepley 8569d29d7c6eSMatthew G. Knepley PetscFunctionBegin; 8570d29d7c6eSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8571d29d7c6eSMatthew G. Knepley PetscCall(VecGetDM(U, &dmIn)); 8572d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dmIn, &localU)); 8573d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &localX)); 8574f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 857572fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalBegin(dmIn, U, mode, localU)); 857672fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalEnd(dmIn, U, mode, localU)); 8577d29d7c6eSMatthew G. Knepley PetscCall(DMProjectFieldLabelLocal(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX)); 8578d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 8579d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 8580d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &localX)); 8581d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dmIn, &localU)); 85823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8583d29d7c6eSMatthew G. Knepley } 8584d29d7c6eSMatthew G. Knepley 8585d29d7c6eSMatthew G. Knepley /*@C 8586ece3a9fcSMatthew G. Knepley DMProjectBdFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain boundary specified by the label. 8587ece3a9fcSMatthew G. Knepley 858820f4b53cSBarry Smith Not Collective 8589ece3a9fcSMatthew G. Knepley 8590ece3a9fcSMatthew G. Knepley Input Parameters: 8591bb7acecfSBarry Smith + dm - The `DM` 8592ece3a9fcSMatthew G. Knepley . time - The time 8593bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain boundary to output 8594ece3a9fcSMatthew G. Knepley . numIds - The number of label ids to use 8595ece3a9fcSMatthew G. Knepley . ids - The label ids to use for marking 8596bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 859720f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8598ece3a9fcSMatthew G. Knepley . localU - The input field vector 8599ece3a9fcSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8600ece3a9fcSMatthew G. Knepley - mode - The insertion mode for values 8601ece3a9fcSMatthew G. Knepley 8602ece3a9fcSMatthew G. Knepley Output Parameter: 8603ece3a9fcSMatthew G. Knepley . localX - The output vector 8604ece3a9fcSMatthew G. Knepley 860520f4b53cSBarry Smith Calling sequence of `funcs`: 8606ece3a9fcSMatthew G. Knepley + dim - The spatial dimension 8607ece3a9fcSMatthew G. Knepley . Nf - The number of input fields 8608ece3a9fcSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8609ece3a9fcSMatthew G. Knepley . uOff - The offset of each field in u[] 8610ece3a9fcSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8611ece3a9fcSMatthew G. Knepley . u - The field values at this point in space 8612ece3a9fcSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8613ece3a9fcSMatthew G. Knepley . u_x - The field derivatives at this point in space 8614ece3a9fcSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8615ece3a9fcSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8616ece3a9fcSMatthew G. Knepley . a - The auxiliary field values at this point in space 8617ece3a9fcSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8618ece3a9fcSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8619ece3a9fcSMatthew G. Knepley . t - The current time 8620ece3a9fcSMatthew G. Knepley . x - The coordinates of this point 8621ece3a9fcSMatthew G. Knepley . n - The face normal 8622ece3a9fcSMatthew G. Knepley . numConstants - The number of constants 8623ece3a9fcSMatthew G. Knepley . constants - The value of each constant 8624ece3a9fcSMatthew G. Knepley - f - The value of the function at this point in space 8625ece3a9fcSMatthew G. Knepley 862673ff1848SBarry Smith Level: intermediate 862773ff1848SBarry Smith 8628ece3a9fcSMatthew G. Knepley Note: 8629bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8630bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8631bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8632ece3a9fcSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8633ece3a9fcSMatthew G. Knepley 8634bb7acecfSBarry Smith Developer Notes: 8635bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8636bb7acecfSBarry Smith 8637bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8638bb7acecfSBarry Smith 86391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8640ece3a9fcSMatthew G. Knepley @*/ 8641a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectBdFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8642d71ae5a4SJacob Faibussowitsch { 8643ece3a9fcSMatthew G. Knepley PetscFunctionBegin; 8644ece3a9fcSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8645064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8646064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8647fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectbdfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX); 86483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8649ece3a9fcSMatthew G. Knepley } 8650ece3a9fcSMatthew G. Knepley 8651ece3a9fcSMatthew G. Knepley /*@C 86522716604bSToby Isaac DMComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 86532716604bSToby Isaac 865420f4b53cSBarry Smith Collective 8655bb7acecfSBarry Smith 86562716604bSToby Isaac Input Parameters: 8657bb7acecfSBarry Smith + dm - The `DM` 86580709b2feSToby Isaac . time - The time 86592716604bSToby Isaac . funcs - The functions to evaluate for each field component 86602716604bSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8661574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 86622716604bSToby Isaac 86632716604bSToby Isaac Output Parameter: 86642716604bSToby Isaac . diff - The diff ||u - u_h||_2 86652716604bSToby Isaac 86662716604bSToby Isaac Level: developer 86672716604bSToby Isaac 8668bb7acecfSBarry Smith Developer Notes: 8669bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8670bb7acecfSBarry Smith 8671bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8672bb7acecfSBarry Smith 86731cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 86742716604bSToby Isaac @*/ 8675d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 8676d71ae5a4SJacob Faibussowitsch { 86772716604bSToby Isaac PetscFunctionBegin; 86782716604bSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8679b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8680fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2diff, time, funcs, ctxs, X, diff); 86813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 86822716604bSToby Isaac } 8683b698f381SToby Isaac 8684b698f381SToby Isaac /*@C 8685b698f381SToby Isaac DMComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h. 8686b698f381SToby Isaac 868720f4b53cSBarry Smith Collective 8688d083f849SBarry Smith 8689b698f381SToby Isaac Input Parameters: 8690bb7acecfSBarry Smith + dm - The `DM` 8691a4e35b19SJacob Faibussowitsch . time - The time 8692b698f381SToby Isaac . funcs - The gradient functions to evaluate for each field component 8693b698f381SToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8694574a98acSMatthew G. Knepley . X - The coefficient vector u_h, a global vector 8695b698f381SToby Isaac - n - The vector to project along 8696b698f381SToby Isaac 8697b698f381SToby Isaac Output Parameter: 8698b698f381SToby Isaac . diff - The diff ||(grad u - grad u_h) . n||_2 8699b698f381SToby Isaac 8700b698f381SToby Isaac Level: developer 8701b698f381SToby Isaac 8702bb7acecfSBarry Smith Developer Notes: 8703bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8704bb7acecfSBarry Smith 8705bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8706bb7acecfSBarry Smith 87071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMComputeL2FieldDiff()` 8708b698f381SToby Isaac @*/ 8709d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 8710d71ae5a4SJacob Faibussowitsch { 8711b698f381SToby Isaac PetscFunctionBegin; 8712b698f381SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8713b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8714fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2gradientdiff, time, funcs, ctxs, X, n, diff); 87153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8716b698f381SToby Isaac } 8717b698f381SToby Isaac 87182a16baeaSToby Isaac /*@C 87192a16baeaSToby Isaac DMComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components. 87202a16baeaSToby Isaac 872120f4b53cSBarry Smith Collective 8722d083f849SBarry Smith 87232a16baeaSToby Isaac Input Parameters: 8724bb7acecfSBarry Smith + dm - The `DM` 87252a16baeaSToby Isaac . time - The time 87262a16baeaSToby Isaac . funcs - The functions to evaluate for each field component 87272a16baeaSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8728574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 87292a16baeaSToby Isaac 87302a16baeaSToby Isaac Output Parameter: 87312a16baeaSToby Isaac . diff - The array of differences, ||u^f - u^f_h||_2 87322a16baeaSToby Isaac 87332a16baeaSToby Isaac Level: developer 87342a16baeaSToby Isaac 8735bb7acecfSBarry Smith Developer Notes: 8736bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8737bb7acecfSBarry Smith 8738bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8739bb7acecfSBarry Smith 874042747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2GradientDiff()` 87412a16baeaSToby Isaac @*/ 8742d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[]) 8743d71ae5a4SJacob Faibussowitsch { 87442a16baeaSToby Isaac PetscFunctionBegin; 87452a16baeaSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 87462a16baeaSToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8747fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2fielddiff, time, funcs, ctxs, X, diff); 87483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 87492a16baeaSToby Isaac } 87502a16baeaSToby Isaac 8751df0b854cSToby Isaac /*@C 8752bb7acecfSBarry Smith DMGetNeighbors - Gets an array containing the MPI ranks of all the processes neighbors 8753502a2867SDave May 8754502a2867SDave May Not Collective 8755502a2867SDave May 8756502a2867SDave May Input Parameter: 8757bb7acecfSBarry Smith . dm - The `DM` 8758502a2867SDave May 87590a19bb7dSprj- Output Parameters: 87600a19bb7dSprj- + nranks - the number of neighbours 87610a19bb7dSprj- - ranks - the neighbors ranks 8762502a2867SDave May 87639bdbcad8SBarry Smith Level: beginner 87649bdbcad8SBarry Smith 8765bb7acecfSBarry Smith Note: 8766bb7acecfSBarry Smith Do not free the array, it is freed when the `DM` is destroyed. 8767502a2867SDave May 87681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDAGetNeighbors()`, `PetscSFGetRootRanks()` 8769502a2867SDave May @*/ 8770d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNeighbors(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[]) 8771d71ae5a4SJacob Faibussowitsch { 8772502a2867SDave May PetscFunctionBegin; 8773502a2867SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8774fa1e479aSStefano Zampini PetscUseTypeMethod(dm, getneighbors, nranks, ranks); 87753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8776502a2867SDave May } 8777502a2867SDave May 8778531c7667SBarry Smith #include <petsc/private/matimpl.h> /* Needed because of coloring->ctype below */ 8779531c7667SBarry Smith 8780531c7667SBarry Smith /* 8781531c7667SBarry Smith Converts the input vector to a ghosted vector and then calls the standard coloring code. 87822b6f951bSStefano Zampini This must be a different function because it requires DM which is not defined in the Mat library 8783531c7667SBarry Smith */ 878466976f2fSJacob Faibussowitsch static PetscErrorCode MatFDColoringApply_AIJDM(Mat J, MatFDColoring coloring, Vec x1, void *sctx) 8785d71ae5a4SJacob Faibussowitsch { 8786531c7667SBarry Smith PetscFunctionBegin; 8787531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8788531c7667SBarry Smith Vec x1local; 8789531c7667SBarry Smith DM dm; 87909566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 87917a8be351SBarry Smith PetscCheck(dm, PetscObjectComm((PetscObject)J), PETSC_ERR_ARG_INCOMP, "IS_COLORING_LOCAL requires a DM"); 87929566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &x1local)); 87939566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, x1, INSERT_VALUES, x1local)); 87949566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, x1, INSERT_VALUES, x1local)); 8795531c7667SBarry Smith x1 = x1local; 8796531c7667SBarry Smith } 87979566063dSJacob Faibussowitsch PetscCall(MatFDColoringApply_AIJ(J, coloring, x1, sctx)); 8798531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8799531c7667SBarry Smith DM dm; 88009566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 88019566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &x1)); 8802531c7667SBarry Smith } 88033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8804531c7667SBarry Smith } 8805531c7667SBarry Smith 8806531c7667SBarry Smith /*@ 8807bb7acecfSBarry Smith MatFDColoringUseDM - allows a `MatFDColoring` object to use the `DM` associated with the matrix to compute a `IS_COLORING_LOCAL` coloring 8808531c7667SBarry Smith 8809a4e35b19SJacob Faibussowitsch Input Parameters: 8810a4e35b19SJacob Faibussowitsch + coloring - The matrix to get the `DM` from 8811a4e35b19SJacob Faibussowitsch - fdcoloring - the `MatFDColoring` object 8812531c7667SBarry Smith 88139bdbcad8SBarry Smith Level: advanced 88149bdbcad8SBarry Smith 881573ff1848SBarry Smith Developer Note: 881673ff1848SBarry Smith This routine exists because the PETSc `Mat` library does not know about the `DM` objects 8817531c7667SBarry Smith 88181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatFDColoring`, `MatFDColoringCreate()`, `ISColoringType` 8819531c7667SBarry Smith @*/ 8820d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringUseDM(Mat coloring, MatFDColoring fdcoloring) 8821d71ae5a4SJacob Faibussowitsch { 8822531c7667SBarry Smith PetscFunctionBegin; 8823531c7667SBarry Smith coloring->ops->fdcoloringapply = MatFDColoringApply_AIJDM; 88243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8825531c7667SBarry Smith } 88268320bc6fSPatrick Sanan 88278320bc6fSPatrick Sanan /*@ 8828bb7acecfSBarry Smith DMGetCompatibility - determine if two `DM`s are compatible 88298320bc6fSPatrick Sanan 88308320bc6fSPatrick Sanan Collective 88318320bc6fSPatrick Sanan 88328320bc6fSPatrick Sanan Input Parameters: 8833bb7acecfSBarry Smith + dm1 - the first `DM` 8834bb7acecfSBarry Smith - dm2 - the second `DM` 88358320bc6fSPatrick Sanan 88368320bc6fSPatrick Sanan Output Parameters: 8837bb7acecfSBarry Smith + compatible - whether or not the two `DM`s are compatible 8838bb7acecfSBarry Smith - set - whether or not the compatible value was actually determined and set 88398320bc6fSPatrick Sanan 884020f4b53cSBarry Smith Level: advanced 884120f4b53cSBarry Smith 88428320bc6fSPatrick Sanan Notes: 8843bb7acecfSBarry Smith Two `DM`s are deemed compatible if they represent the same parallel decomposition 88443d862458SPatrick Sanan of the same topology. This implies that the section (field data) on one 88458320bc6fSPatrick Sanan "makes sense" with respect to the topology and parallel decomposition of the other. 8846bb7acecfSBarry Smith Loosely speaking, compatible `DM`s represent the same domain and parallel 88473d862458SPatrick Sanan decomposition, but hold different data. 88488320bc6fSPatrick Sanan 88498320bc6fSPatrick Sanan Typically, one would confirm compatibility if intending to simultaneously iterate 8850bb7acecfSBarry Smith over a pair of vectors obtained from different `DM`s. 88518320bc6fSPatrick Sanan 8852bb7acecfSBarry Smith For example, two `DMDA` objects are compatible if they have the same local 88538320bc6fSPatrick Sanan and global sizes and the same stencil width. They can have different numbers 88548320bc6fSPatrick Sanan of degrees of freedom per node. Thus, one could use the node numbering from 8855bb7acecfSBarry Smith either `DM` in bounds for a loop over vectors derived from either `DM`. 88568320bc6fSPatrick Sanan 8857bb7acecfSBarry Smith Consider the operation of summing data living on a 2-dof `DMDA` to data living 8858bb7acecfSBarry Smith on a 1-dof `DMDA`, which should be compatible, as in the following snippet. 88598320bc6fSPatrick Sanan .vb 88608320bc6fSPatrick Sanan ... 88619566063dSJacob Faibussowitsch PetscCall(DMGetCompatibility(da1,da2,&compatible,&set)); 88628320bc6fSPatrick Sanan if (set && compatible) { 88639566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da1,vec1,&arr1)); 88649566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da2,vec2,&arr2)); 88659566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da1,&x,&y,NULL,&m,&n,NULL)); 88668320bc6fSPatrick Sanan for (j=y; j<y+n; ++j) { 88678320bc6fSPatrick Sanan for (i=x; i<x+m, ++i) { 88688320bc6fSPatrick Sanan arr1[j][i][0] = arr2[j][i][0] + arr2[j][i][1]; 88698320bc6fSPatrick Sanan } 88708320bc6fSPatrick Sanan } 88719566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da1,vec1,&arr1)); 88729566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da2,vec2,&arr2)); 88738320bc6fSPatrick Sanan } else { 88748320bc6fSPatrick Sanan SETERRQ(PetscObjectComm((PetscObject)da1,PETSC_ERR_ARG_INCOMP,"DMDA objects incompatible"); 88758320bc6fSPatrick Sanan } 88768320bc6fSPatrick Sanan ... 88778320bc6fSPatrick Sanan .ve 88788320bc6fSPatrick Sanan 8879bb7acecfSBarry Smith Checking compatibility might be expensive for a given implementation of `DM`, 88808320bc6fSPatrick Sanan or might be impossible to unambiguously confirm or deny. For this reason, 88818320bc6fSPatrick Sanan this function may decline to determine compatibility, and hence users should 88828320bc6fSPatrick Sanan always check the "set" output parameter. 88838320bc6fSPatrick Sanan 8884bb7acecfSBarry Smith A `DM` is always compatible with itself. 88858320bc6fSPatrick Sanan 8886bb7acecfSBarry Smith In the current implementation, `DM`s which live on "unequal" communicators 88878320bc6fSPatrick Sanan (MPI_UNEQUAL in the terminology of MPI_Comm_compare()) are always deemed 88888320bc6fSPatrick Sanan incompatible. 88898320bc6fSPatrick Sanan 88908320bc6fSPatrick Sanan This function is labeled "Collective," as information about all subdomains 8891bb7acecfSBarry Smith is required on each rank. However, in `DM` implementations which store all this 88928320bc6fSPatrick Sanan information locally, this function may be merely "Logically Collective". 88938320bc6fSPatrick Sanan 889473ff1848SBarry Smith Developer Note: 8895bb7acecfSBarry Smith Compatibility is assumed to be a symmetric concept; `DM` A is compatible with `DM` B 88963d862458SPatrick Sanan iff B is compatible with A. Thus, this function checks the implementations 8897a5bc1bf3SBarry Smith of both dm and dmc (if they are of different types), attempting to determine 8898bb7acecfSBarry Smith compatibility. It is left to `DM` implementers to ensure that symmetry is 88998320bc6fSPatrick Sanan preserved. The simplest way to do this is, when implementing type-specific 89003d862458SPatrick Sanan logic for this function, is to check for existing logic in the implementation 8901bb7acecfSBarry Smith of other `DM` types and let *set = PETSC_FALSE if found. 89028320bc6fSPatrick Sanan 89031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreateCompatibleDMDA()`, `DMStagCreateCompatibleDMStag()` 89048320bc6fSPatrick Sanan @*/ 8905d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCompatibility(DM dm1, DM dm2, PetscBool *compatible, PetscBool *set) 8906d71ae5a4SJacob Faibussowitsch { 89078320bc6fSPatrick Sanan PetscMPIInt compareResult; 89088320bc6fSPatrick Sanan DMType type, type2; 89098320bc6fSPatrick Sanan PetscBool sameType; 89108320bc6fSPatrick Sanan 89118320bc6fSPatrick Sanan PetscFunctionBegin; 8912a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dm1, DM_CLASSID, 1); 89138320bc6fSPatrick Sanan PetscValidHeaderSpecific(dm2, DM_CLASSID, 2); 89148320bc6fSPatrick Sanan 89158320bc6fSPatrick Sanan /* Declare a DM compatible with itself */ 8916a5bc1bf3SBarry Smith if (dm1 == dm2) { 89178320bc6fSPatrick Sanan *set = PETSC_TRUE; 89188320bc6fSPatrick Sanan *compatible = PETSC_TRUE; 89193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 89208320bc6fSPatrick Sanan } 89218320bc6fSPatrick Sanan 89228320bc6fSPatrick Sanan /* Declare a DM incompatible with a DM that lives on an "unequal" 89238320bc6fSPatrick Sanan communicator. Note that this does not preclude compatibility with 89248320bc6fSPatrick Sanan DMs living on "congruent" or "similar" communicators, but this must be 89258320bc6fSPatrick Sanan determined by the implementation-specific logic */ 89269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)dm1), PetscObjectComm((PetscObject)dm2), &compareResult)); 89278320bc6fSPatrick Sanan if (compareResult == MPI_UNEQUAL) { 89288320bc6fSPatrick Sanan *set = PETSC_TRUE; 89298320bc6fSPatrick Sanan *compatible = PETSC_FALSE; 89303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 89318320bc6fSPatrick Sanan } 89328320bc6fSPatrick Sanan 89338320bc6fSPatrick Sanan /* Pass to the implementation-specific routine, if one exists. */ 8934a5bc1bf3SBarry Smith if (dm1->ops->getcompatibility) { 8935dbbe0bcdSBarry Smith PetscUseTypeMethod(dm1, getcompatibility, dm2, compatible, set); 89363ba16761SJacob Faibussowitsch if (*set) PetscFunctionReturn(PETSC_SUCCESS); 89378320bc6fSPatrick Sanan } 89388320bc6fSPatrick Sanan 8939a5bc1bf3SBarry Smith /* If dm1 and dm2 are of different types, then attempt to check compatibility 89408320bc6fSPatrick Sanan with an implementation of this function from dm2 */ 89419566063dSJacob Faibussowitsch PetscCall(DMGetType(dm1, &type)); 89429566063dSJacob Faibussowitsch PetscCall(DMGetType(dm2, &type2)); 89439566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(type, type2, &sameType)); 89448320bc6fSPatrick Sanan if (!sameType && dm2->ops->getcompatibility) { 8945dbbe0bcdSBarry Smith PetscUseTypeMethod(dm2, getcompatibility, dm1, compatible, set); /* Note argument order */ 89468320bc6fSPatrick Sanan } else { 89478320bc6fSPatrick Sanan *set = PETSC_FALSE; 89488320bc6fSPatrick Sanan } 89493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 89508320bc6fSPatrick Sanan } 8951c0f0dcc3SMatthew G. Knepley 8952c0f0dcc3SMatthew G. Knepley /*@C 8953bb7acecfSBarry Smith DMMonitorSet - Sets an additional monitor function that is to be used after a solve to monitor discretization performance. 8954c0f0dcc3SMatthew G. Knepley 895520f4b53cSBarry Smith Logically Collective 8956c0f0dcc3SMatthew G. Knepley 8957c0f0dcc3SMatthew G. Knepley Input Parameters: 895860225df5SJacob Faibussowitsch + dm - the `DM` 8959c0f0dcc3SMatthew G. Knepley . f - the monitor function 896020f4b53cSBarry Smith . mctx - [optional] user-defined context for private data for the monitor routine (use `NULL` if no context is desired) 896149abdd8aSBarry Smith - monitordestroy - [optional] routine that frees monitor context (may be `NULL`), see `PetscCtxDestroyFn` for the calling sequence 8962c0f0dcc3SMatthew G. Knepley 896320f4b53cSBarry Smith Options Database Key: 896460225df5SJacob Faibussowitsch . -dm_monitor_cancel - cancels all monitors that have been hardwired into a code by calls to `DMMonitorSet()`, but 8965c0f0dcc3SMatthew G. Knepley does not cancel those set via the options database. 8966c0f0dcc3SMatthew G. Knepley 89679bdbcad8SBarry Smith Level: intermediate 89689bdbcad8SBarry Smith 8969bb7acecfSBarry Smith Note: 8970c0f0dcc3SMatthew G. Knepley Several different monitoring routines may be set by calling 8971bb7acecfSBarry Smith `DMMonitorSet()` multiple times or with `DMMonitorSetFromOptions()`; all will be called in the 8972c0f0dcc3SMatthew G. Knepley order in which they were set. 8973c0f0dcc3SMatthew G. Knepley 897473ff1848SBarry Smith Fortran Note: 8975bb7acecfSBarry Smith Only a single monitor function can be set for each `DM` object 8976bb7acecfSBarry Smith 897773ff1848SBarry Smith Developer Note: 8978bb7acecfSBarry Smith This API has a generic name but seems specific to a very particular aspect of the use of `DM` 8979c0f0dcc3SMatthew G. Knepley 898049abdd8aSBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorCancel()`, `DMMonitorSetFromOptions()`, `DMMonitor()`, `PetscCtxDestroyFn` 8981c0f0dcc3SMatthew G. Knepley @*/ 898249abdd8aSBarry Smith PetscErrorCode DMMonitorSet(DM dm, PetscErrorCode (*f)(DM, void *), void *mctx, PetscCtxDestroyFn *monitordestroy) 8983d71ae5a4SJacob Faibussowitsch { 8984c0f0dcc3SMatthew G. Knepley PetscInt m; 8985c0f0dcc3SMatthew G. Knepley 8986c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8987c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8988c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 8989c0f0dcc3SMatthew G. Knepley PetscBool identical; 8990c0f0dcc3SMatthew G. Knepley 89919566063dSJacob Faibussowitsch PetscCall(PetscMonitorCompare((PetscErrorCode (*)(void))f, mctx, monitordestroy, (PetscErrorCode (*)(void))dm->monitor[m], dm->monitorcontext[m], dm->monitordestroy[m], &identical)); 89923ba16761SJacob Faibussowitsch if (identical) PetscFunctionReturn(PETSC_SUCCESS); 8993c0f0dcc3SMatthew G. Knepley } 89947a8be351SBarry Smith PetscCheck(dm->numbermonitors < MAXDMMONITORS, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many monitors set"); 8995c0f0dcc3SMatthew G. Knepley dm->monitor[dm->numbermonitors] = f; 8996c0f0dcc3SMatthew G. Knepley dm->monitordestroy[dm->numbermonitors] = monitordestroy; 8997835f2295SStefano Zampini dm->monitorcontext[dm->numbermonitors++] = mctx; 89983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8999c0f0dcc3SMatthew G. Knepley } 9000c0f0dcc3SMatthew G. Knepley 9001c0f0dcc3SMatthew G. Knepley /*@ 9002bb7acecfSBarry Smith DMMonitorCancel - Clears all the monitor functions for a `DM` object. 9003c0f0dcc3SMatthew G. Knepley 900420f4b53cSBarry Smith Logically Collective 9005c0f0dcc3SMatthew G. Knepley 9006c0f0dcc3SMatthew G. Knepley Input Parameter: 9007c0f0dcc3SMatthew G. Knepley . dm - the DM 9008c0f0dcc3SMatthew G. Knepley 9009c0f0dcc3SMatthew G. Knepley Options Database Key: 9010c0f0dcc3SMatthew G. Knepley . -dm_monitor_cancel - cancels all monitors that have been hardwired 9011bb7acecfSBarry Smith into a code by calls to `DMonitorSet()`, but does not cancel those 9012c0f0dcc3SMatthew G. Knepley set via the options database 9013c0f0dcc3SMatthew G. Knepley 90149bdbcad8SBarry Smith Level: intermediate 90159bdbcad8SBarry Smith 9016bb7acecfSBarry Smith Note: 9017bb7acecfSBarry Smith There is no way to clear one specific monitor from a `DM` object. 9018c0f0dcc3SMatthew G. Knepley 90191cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`, `DMMonitor()` 9020c0f0dcc3SMatthew G. Knepley @*/ 9021d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorCancel(DM dm) 9022d71ae5a4SJacob Faibussowitsch { 9023c0f0dcc3SMatthew G. Knepley PetscInt m; 9024c0f0dcc3SMatthew G. Knepley 9025c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 9026c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9027c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 90289566063dSJacob Faibussowitsch if (dm->monitordestroy[m]) PetscCall((*dm->monitordestroy[m])(&dm->monitorcontext[m])); 9029c0f0dcc3SMatthew G. Knepley } 9030c0f0dcc3SMatthew G. Knepley dm->numbermonitors = 0; 90313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9032c0f0dcc3SMatthew G. Knepley } 9033c0f0dcc3SMatthew G. Knepley 9034c0f0dcc3SMatthew G. Knepley /*@C 9035c0f0dcc3SMatthew G. Knepley DMMonitorSetFromOptions - Sets a monitor function and viewer appropriate for the type indicated by the user 9036c0f0dcc3SMatthew G. Knepley 903720f4b53cSBarry Smith Collective 9038c0f0dcc3SMatthew G. Knepley 9039c0f0dcc3SMatthew G. Knepley Input Parameters: 9040bb7acecfSBarry Smith + dm - `DM` object you wish to monitor 9041c0f0dcc3SMatthew G. Knepley . name - the monitor type one is seeking 9042c0f0dcc3SMatthew G. Knepley . help - message indicating what monitoring is done 9043c0f0dcc3SMatthew G. Knepley . manual - manual page for the monitor 904449abdd8aSBarry Smith . monitor - the monitor function, this must use a `PetscViewerFormat` as its context 9045bb7acecfSBarry Smith - monitorsetup - a function that is called once ONLY if the user selected this monitor that may set additional features of the `DM` or `PetscViewer` objects 9046c0f0dcc3SMatthew G. Knepley 9047c0f0dcc3SMatthew G. Knepley Output Parameter: 9048c0f0dcc3SMatthew G. Knepley . flg - Flag set if the monitor was created 9049c0f0dcc3SMatthew G. Knepley 9050c0f0dcc3SMatthew G. Knepley Level: developer 9051c0f0dcc3SMatthew G. Knepley 9052648c30bcSBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscOptionsCreateViewer()`, `PetscOptionsGetReal()`, `PetscOptionsHasName()`, `PetscOptionsGetString()`, 9053db781477SPatrick Sanan `PetscOptionsGetIntArray()`, `PetscOptionsGetRealArray()`, `PetscOptionsBool()` 905460225df5SJacob Faibussowitsch `PetscOptionsInt()`, `PetscOptionsString()`, `PetscOptionsReal()`, 9055db781477SPatrick Sanan `PetscOptionsName()`, `PetscOptionsBegin()`, `PetscOptionsEnd()`, `PetscOptionsHeadBegin()`, 9056c2e3fba1SPatrick Sanan `PetscOptionsStringArray()`, `PetscOptionsRealArray()`, `PetscOptionsScalar()`, 9057db781477SPatrick Sanan `PetscOptionsBoolGroupBegin()`, `PetscOptionsBoolGroup()`, `PetscOptionsBoolGroupEnd()`, 9058bb7acecfSBarry Smith `PetscOptionsFList()`, `PetscOptionsEList()`, `DMMonitor()`, `DMMonitorSet()` 9059c0f0dcc3SMatthew G. Knepley @*/ 9060d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSetFromOptions(DM dm, const char name[], const char help[], const char manual[], PetscErrorCode (*monitor)(DM, void *), PetscErrorCode (*monitorsetup)(DM, PetscViewerAndFormat *), PetscBool *flg) 9061d71ae5a4SJacob Faibussowitsch { 9062c0f0dcc3SMatthew G. Knepley PetscViewer viewer; 9063c0f0dcc3SMatthew G. Knepley PetscViewerFormat format; 9064c0f0dcc3SMatthew G. Knepley 9065c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 9066c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9067648c30bcSBarry Smith PetscCall(PetscOptionsCreateViewer(PetscObjectComm((PetscObject)dm), ((PetscObject)dm)->options, ((PetscObject)dm)->prefix, name, &viewer, &format, flg)); 9068c0f0dcc3SMatthew G. Knepley if (*flg) { 9069c0f0dcc3SMatthew G. Knepley PetscViewerAndFormat *vf; 9070c0f0dcc3SMatthew G. Knepley 90719566063dSJacob Faibussowitsch PetscCall(PetscViewerAndFormatCreate(viewer, format, &vf)); 9072648c30bcSBarry Smith PetscCall(PetscViewerDestroy(&viewer)); 90739566063dSJacob Faibussowitsch if (monitorsetup) PetscCall((*monitorsetup)(dm, vf)); 9074835f2295SStefano Zampini PetscCall(DMMonitorSet(dm, monitor, vf, (PetscCtxDestroyFn *)PetscViewerAndFormatDestroy)); 9075c0f0dcc3SMatthew G. Knepley } 90763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9077c0f0dcc3SMatthew G. Knepley } 9078c0f0dcc3SMatthew G. Knepley 9079c0f0dcc3SMatthew G. Knepley /*@ 9080c0f0dcc3SMatthew G. Knepley DMMonitor - runs the user provided monitor routines, if they exist 9081c0f0dcc3SMatthew G. Knepley 908220f4b53cSBarry Smith Collective 9083c0f0dcc3SMatthew G. Knepley 90842fe279fdSBarry Smith Input Parameter: 9085bb7acecfSBarry Smith . dm - The `DM` 9086c0f0dcc3SMatthew G. Knepley 9087c0f0dcc3SMatthew G. Knepley Level: developer 9088c0f0dcc3SMatthew G. Knepley 908973ff1848SBarry Smith Developer Note: 9090a4e35b19SJacob Faibussowitsch Note should indicate when during the life of the `DM` the monitor is run. It appears to be 9091a4e35b19SJacob Faibussowitsch related to the discretization process seems rather specialized since some `DM` have no 9092a4e35b19SJacob Faibussowitsch concept of discretization. 9093bb7acecfSBarry Smith 90941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()` 9095c0f0dcc3SMatthew G. Knepley @*/ 9096d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitor(DM dm) 9097d71ae5a4SJacob Faibussowitsch { 9098c0f0dcc3SMatthew G. Knepley PetscInt m; 9099c0f0dcc3SMatthew G. Knepley 9100c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 91013ba16761SJacob Faibussowitsch if (!dm) PetscFunctionReturn(PETSC_SUCCESS); 9102c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 910348a46eb9SPierre Jolivet for (m = 0; m < dm->numbermonitors; ++m) PetscCall((*dm->monitor[m])(dm, dm->monitorcontext[m])); 91043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9105c0f0dcc3SMatthew G. Knepley } 91062e4af2aeSMatthew G. Knepley 91072e4af2aeSMatthew G. Knepley /*@ 9108bb7acecfSBarry Smith DMComputeError - Computes the error assuming the user has provided the exact solution functions 91092e4af2aeSMatthew G. Knepley 911020f4b53cSBarry Smith Collective 91112e4af2aeSMatthew G. Knepley 91122e4af2aeSMatthew G. Knepley Input Parameters: 9113bb7acecfSBarry Smith + dm - The `DM` 91146b867d5aSJose E. Roman - sol - The solution vector 91152e4af2aeSMatthew G. Knepley 91166b867d5aSJose E. Roman Input/Output Parameter: 911720f4b53cSBarry Smith . errors - An array of length Nf, the number of fields, or `NULL` for no output; on output 91186b867d5aSJose E. Roman contains the error in each field 91196b867d5aSJose E. Roman 91206b867d5aSJose E. Roman Output Parameter: 912120f4b53cSBarry Smith . errorVec - A vector to hold the cellwise error (may be `NULL`) 912220f4b53cSBarry Smith 912320f4b53cSBarry Smith Level: developer 91242e4af2aeSMatthew G. Knepley 9125bb7acecfSBarry Smith Note: 9126bb7acecfSBarry Smith The exact solutions come from the `PetscDS` object, and the time comes from `DMGetOutputSequenceNumber()`. 91272e4af2aeSMatthew G. Knepley 91281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMGetRegionNumDS()`, `PetscDSGetExactSolution()`, `DMGetOutputSequenceNumber()` 91292e4af2aeSMatthew G. Knepley @*/ 9130d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeError(DM dm, Vec sol, PetscReal errors[], Vec *errorVec) 9131d71ae5a4SJacob Faibussowitsch { 91322e4af2aeSMatthew G. Knepley PetscErrorCode (**exactSol)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *); 91332e4af2aeSMatthew G. Knepley void **ctxs; 91342e4af2aeSMatthew G. Knepley PetscReal time; 91352e4af2aeSMatthew G. Knepley PetscInt Nf, f, Nds, s; 91362e4af2aeSMatthew G. Knepley 91372e4af2aeSMatthew G. Knepley PetscFunctionBegin; 91389566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 91399566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &exactSol, Nf, &ctxs)); 91409566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 91412e4af2aeSMatthew G. Knepley for (s = 0; s < Nds; ++s) { 91422e4af2aeSMatthew G. Knepley PetscDS ds; 91432e4af2aeSMatthew G. Knepley DMLabel label; 91442e4af2aeSMatthew G. Knepley IS fieldIS; 91452e4af2aeSMatthew G. Knepley const PetscInt *fields; 91462e4af2aeSMatthew G. Knepley PetscInt dsNf; 91472e4af2aeSMatthew G. Knepley 914807218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 91499566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 91509566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISGetIndices(fieldIS, &fields)); 91512e4af2aeSMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 91522e4af2aeSMatthew G. Knepley const PetscInt field = fields[f]; 91539566063dSJacob Faibussowitsch PetscCall(PetscDSGetExactSolution(ds, field, &exactSol[field], &ctxs[field])); 91542e4af2aeSMatthew G. Knepley } 91559566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISRestoreIndices(fieldIS, &fields)); 91562e4af2aeSMatthew G. Knepley } 9157ad540459SPierre Jolivet for (f = 0; f < Nf; ++f) PetscCheck(exactSol[f], PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "DS must contain exact solution functions in order to calculate error, missing for field %" PetscInt_FMT, f); 91589566063dSJacob Faibussowitsch PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time)); 91599566063dSJacob Faibussowitsch if (errors) PetscCall(DMComputeL2FieldDiff(dm, time, exactSol, ctxs, sol, errors)); 91602e4af2aeSMatthew G. Knepley if (errorVec) { 91612e4af2aeSMatthew G. Knepley DM edm; 91622e4af2aeSMatthew G. Knepley DMPolytopeType ct; 91632e4af2aeSMatthew G. Knepley PetscBool simplex; 91642e4af2aeSMatthew G. Knepley PetscInt dim, cStart, Nf; 91652e4af2aeSMatthew G. Knepley 91669566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &edm)); 91679566063dSJacob Faibussowitsch PetscCall(DMGetDimension(edm, &dim)); 91689566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 91699566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 91702e4af2aeSMatthew G. Knepley simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE; 91719566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 91722e4af2aeSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 91732e4af2aeSMatthew G. Knepley PetscFE fe, efe; 91742e4af2aeSMatthew G. Knepley PetscQuadrature q; 91752e4af2aeSMatthew G. Knepley const char *name; 91762e4af2aeSMatthew G. Knepley 91779566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe)); 91789566063dSJacob Faibussowitsch PetscCall(PetscFECreateLagrange(PETSC_COMM_SELF, dim, Nf, simplex, 0, PETSC_DETERMINE, &efe)); 91799566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)fe, &name)); 91809566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)efe, name)); 91819566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 91829566063dSJacob Faibussowitsch PetscCall(PetscFESetQuadrature(efe, q)); 91839566063dSJacob Faibussowitsch PetscCall(DMSetField(edm, f, NULL, (PetscObject)efe)); 91849566063dSJacob Faibussowitsch PetscCall(PetscFEDestroy(&efe)); 91852e4af2aeSMatthew G. Knepley } 91869566063dSJacob Faibussowitsch PetscCall(DMCreateDS(edm)); 91872e4af2aeSMatthew G. Knepley 91889566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(edm, errorVec)); 91899566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*errorVec, "Error")); 91909566063dSJacob Faibussowitsch PetscCall(DMPlexComputeL2DiffVec(dm, time, exactSol, ctxs, sol, *errorVec)); 91919566063dSJacob Faibussowitsch PetscCall(DMDestroy(&edm)); 91922e4af2aeSMatthew G. Knepley } 91939566063dSJacob Faibussowitsch PetscCall(PetscFree2(exactSol, ctxs)); 91943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91952e4af2aeSMatthew G. Knepley } 91969a2a23afSMatthew G. Knepley 91979a2a23afSMatthew G. Knepley /*@ 9198bb7acecfSBarry Smith DMGetNumAuxiliaryVec - Get the number of auxiliary vectors associated with this `DM` 91999a2a23afSMatthew G. Knepley 920020f4b53cSBarry Smith Not Collective 92019a2a23afSMatthew G. Knepley 92029a2a23afSMatthew G. Knepley Input Parameter: 9203bb7acecfSBarry Smith . dm - The `DM` 92049a2a23afSMatthew G. Knepley 92059a2a23afSMatthew G. Knepley Output Parameter: 9206a5b23f4aSJose E. Roman . numAux - The number of auxiliary data vectors 92079a2a23afSMatthew G. Knepley 92089a2a23afSMatthew G. Knepley Level: advanced 92099a2a23afSMatthew G. Knepley 9210e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMGetAuxiliaryVec()` 92119a2a23afSMatthew G. Knepley @*/ 9212d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumAuxiliaryVec(DM dm, PetscInt *numAux) 9213d71ae5a4SJacob Faibussowitsch { 92149a2a23afSMatthew G. Knepley PetscFunctionBegin; 92159a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 92169566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetSize(dm->auxData, numAux)); 92173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92189a2a23afSMatthew G. Knepley } 92199a2a23afSMatthew G. Knepley 92209a2a23afSMatthew G. Knepley /*@ 9221ac17215fSMatthew G. Knepley DMGetAuxiliaryVec - Get the auxiliary vector for region specified by the given label and value, and equation part 92229a2a23afSMatthew G. Knepley 922320f4b53cSBarry Smith Not Collective 92249a2a23afSMatthew G. Knepley 92259a2a23afSMatthew G. Knepley Input Parameters: 9226bb7acecfSBarry Smith + dm - The `DM` 9227bb7acecfSBarry Smith . label - The `DMLabel` 9228ac17215fSMatthew G. Knepley . value - The label value indicating the region 9229ac17215fSMatthew G. Knepley - part - The equation part, or 0 if unused 92309a2a23afSMatthew G. Knepley 92319a2a23afSMatthew G. Knepley Output Parameter: 9232bb7acecfSBarry Smith . aux - The `Vec` holding auxiliary field data 92339a2a23afSMatthew G. Knepley 92349bdbcad8SBarry Smith Level: advanced 92359bdbcad8SBarry Smith 9236bb7acecfSBarry Smith Note: 9237bb7acecfSBarry Smith If no auxiliary vector is found for this (label, value), (NULL, 0, 0) is checked as well. 923804c51a94SMatthew G. Knepley 9239e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryLabels()` 92409a2a23afSMatthew G. Knepley @*/ 9241d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec *aux) 9242d71ae5a4SJacob Faibussowitsch { 9243ac17215fSMatthew G. Knepley PetscHashAuxKey key, wild = {NULL, 0, 0}; 924404c51a94SMatthew G. Knepley PetscBool has; 92459a2a23afSMatthew G. Knepley 92469a2a23afSMatthew G. Knepley PetscFunctionBegin; 92479a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 92489a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 92499a2a23afSMatthew G. Knepley key.label = label; 92509a2a23afSMatthew G. Knepley key.value = value; 9251ac17215fSMatthew G. Knepley key.part = part; 92529566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxHas(dm->auxData, key, &has)); 92539566063dSJacob Faibussowitsch if (has) PetscCall(PetscHMapAuxGet(dm->auxData, key, aux)); 92549566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxGet(dm->auxData, wild, aux)); 92553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92569a2a23afSMatthew G. Knepley } 92579a2a23afSMatthew G. Knepley 92589a2a23afSMatthew G. Knepley /*@ 9259bb7acecfSBarry Smith DMSetAuxiliaryVec - Set an auxiliary vector for region specified by the given label and value, and equation part 92609a2a23afSMatthew G. Knepley 926120f4b53cSBarry Smith Not Collective because auxiliary vectors are not parallel 92629a2a23afSMatthew G. Knepley 92639a2a23afSMatthew G. Knepley Input Parameters: 9264bb7acecfSBarry Smith + dm - The `DM` 9265bb7acecfSBarry Smith . label - The `DMLabel` 92669a2a23afSMatthew G. Knepley . value - The label value indicating the region 9267ac17215fSMatthew G. Knepley . part - The equation part, or 0 if unused 9268bb7acecfSBarry Smith - aux - The `Vec` holding auxiliary field data 92699a2a23afSMatthew G. Knepley 92709a2a23afSMatthew G. Knepley Level: advanced 92719a2a23afSMatthew G. Knepley 9272e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMCopyAuxiliaryVec()` 92739a2a23afSMatthew G. Knepley @*/ 9274d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec aux) 9275d71ae5a4SJacob Faibussowitsch { 92769a2a23afSMatthew G. Knepley Vec old; 92779a2a23afSMatthew G. Knepley PetscHashAuxKey key; 92789a2a23afSMatthew G. Knepley 92799a2a23afSMatthew G. Knepley PetscFunctionBegin; 92809a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 92819a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 92829a2a23afSMatthew G. Knepley key.label = label; 92839a2a23afSMatthew G. Knepley key.value = value; 9284ac17215fSMatthew G. Knepley key.part = part; 92859566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGet(dm->auxData, key, &old)); 92869566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)aux)); 92879566063dSJacob Faibussowitsch if (!aux) PetscCall(PetscHMapAuxDel(dm->auxData, key)); 92889566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxSet(dm->auxData, key, aux)); 9289d705d0eaSStefano Zampini PetscCall(VecDestroy(&old)); 92903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92919a2a23afSMatthew G. Knepley } 92929a2a23afSMatthew G. Knepley 9293cc4c1da9SBarry Smith /*@ 9294bb7acecfSBarry Smith DMGetAuxiliaryLabels - Get the labels, values, and parts for all auxiliary vectors in this `DM` 92959a2a23afSMatthew G. Knepley 929620f4b53cSBarry Smith Not Collective 92979a2a23afSMatthew G. Knepley 92989a2a23afSMatthew G. Knepley Input Parameter: 9299bb7acecfSBarry Smith . dm - The `DM` 93009a2a23afSMatthew G. Knepley 93019a2a23afSMatthew G. Knepley Output Parameters: 9302bb7acecfSBarry Smith + labels - The `DMLabel`s for each `Vec` 9303bb7acecfSBarry Smith . values - The label values for each `Vec` 9304bb7acecfSBarry Smith - parts - The equation parts for each `Vec` 93059a2a23afSMatthew G. Knepley 93069bdbcad8SBarry Smith Level: advanced 93079bdbcad8SBarry Smith 9308bb7acecfSBarry Smith Note: 9309bb7acecfSBarry Smith The arrays passed in must be at least as large as `DMGetNumAuxiliaryVec()`. 93109a2a23afSMatthew G. Knepley 9311e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMCopyAuxiliaryVec()` 93129a2a23afSMatthew G. Knepley @*/ 9313d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryLabels(DM dm, DMLabel labels[], PetscInt values[], PetscInt parts[]) 9314d71ae5a4SJacob Faibussowitsch { 93159a2a23afSMatthew G. Knepley PetscHashAuxKey *keys; 93169a2a23afSMatthew G. Knepley PetscInt n, i, off = 0; 93179a2a23afSMatthew G. Knepley 93189a2a23afSMatthew G. Knepley PetscFunctionBegin; 93199a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 93204f572ea9SToby Isaac PetscAssertPointer(labels, 2); 93214f572ea9SToby Isaac PetscAssertPointer(values, 3); 93224f572ea9SToby Isaac PetscAssertPointer(parts, 4); 93239566063dSJacob Faibussowitsch PetscCall(DMGetNumAuxiliaryVec(dm, &n)); 93249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &keys)); 93259566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetKeys(dm->auxData, &off, keys)); 93269371c9d4SSatish Balay for (i = 0; i < n; ++i) { 93279371c9d4SSatish Balay labels[i] = keys[i].label; 93289371c9d4SSatish Balay values[i] = keys[i].value; 93299371c9d4SSatish Balay parts[i] = keys[i].part; 93309371c9d4SSatish Balay } 93319566063dSJacob Faibussowitsch PetscCall(PetscFree(keys)); 93323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 93339a2a23afSMatthew G. Knepley } 93349a2a23afSMatthew G. Knepley 93359a2a23afSMatthew G. Knepley /*@ 9336bb7acecfSBarry Smith DMCopyAuxiliaryVec - Copy the auxiliary vector data on a `DM` to a new `DM` 93379a2a23afSMatthew G. Knepley 933820f4b53cSBarry Smith Not Collective 93399a2a23afSMatthew G. Knepley 93409a2a23afSMatthew G. Knepley Input Parameter: 9341bb7acecfSBarry Smith . dm - The `DM` 93429a2a23afSMatthew G. Knepley 93439a2a23afSMatthew G. Knepley Output Parameter: 9344bb7acecfSBarry Smith . dmNew - The new `DM`, now with the same auxiliary data 93459a2a23afSMatthew G. Knepley 93469a2a23afSMatthew G. Knepley Level: advanced 93479a2a23afSMatthew G. Knepley 9348bb7acecfSBarry Smith Note: 9349bb7acecfSBarry Smith This is a shallow copy of the auxiliary vectors 9350bb7acecfSBarry Smith 9351e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 93529a2a23afSMatthew G. Knepley @*/ 9353d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyAuxiliaryVec(DM dm, DM dmNew) 9354d71ae5a4SJacob Faibussowitsch { 93559a2a23afSMatthew G. Knepley PetscFunctionBegin; 93569a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9357d705d0eaSStefano Zampini PetscValidHeaderSpecific(dmNew, DM_CLASSID, 2); 9358d705d0eaSStefano Zampini if (dm == dmNew) PetscFunctionReturn(PETSC_SUCCESS); 9359e4d5475eSStefano Zampini PetscCall(DMClearAuxiliaryVec(dmNew)); 9360e4d5475eSStefano Zampini 9361e4d5475eSStefano Zampini PetscCall(PetscHMapAuxDestroy(&dmNew->auxData)); 93629566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDuplicate(dm->auxData, &dmNew->auxData)); 9363d705d0eaSStefano Zampini { 9364d705d0eaSStefano Zampini Vec *auxData; 9365d705d0eaSStefano Zampini PetscInt n, i, off = 0; 9366d705d0eaSStefano Zampini 9367d705d0eaSStefano Zampini PetscCall(PetscHMapAuxGetSize(dmNew->auxData, &n)); 9368d705d0eaSStefano Zampini PetscCall(PetscMalloc1(n, &auxData)); 9369d705d0eaSStefano Zampini PetscCall(PetscHMapAuxGetVals(dmNew->auxData, &off, auxData)); 9370d705d0eaSStefano Zampini for (i = 0; i < n; ++i) PetscCall(PetscObjectReference((PetscObject)auxData[i])); 9371d705d0eaSStefano Zampini PetscCall(PetscFree(auxData)); 9372e4d5475eSStefano Zampini } 9373e4d5475eSStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 9374e4d5475eSStefano Zampini } 9375e4d5475eSStefano Zampini 9376e4d5475eSStefano Zampini /*@ 9377e4d5475eSStefano Zampini DMClearAuxiliaryVec - Destroys the auxiliary vector information and creates a new empty one 9378e4d5475eSStefano Zampini 9379e4d5475eSStefano Zampini Not Collective 9380e4d5475eSStefano Zampini 9381e4d5475eSStefano Zampini Input Parameter: 9382e4d5475eSStefano Zampini . dm - The `DM` 9383e4d5475eSStefano Zampini 9384e4d5475eSStefano Zampini Level: advanced 9385e4d5475eSStefano Zampini 9386e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMCopyAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 9387e4d5475eSStefano Zampini @*/ 9388e4d5475eSStefano Zampini PetscErrorCode DMClearAuxiliaryVec(DM dm) 9389e4d5475eSStefano Zampini { 9390e4d5475eSStefano Zampini Vec *auxData; 9391e4d5475eSStefano Zampini PetscInt n, i, off = 0; 9392e4d5475eSStefano Zampini 9393e4d5475eSStefano Zampini PetscFunctionBegin; 9394e4d5475eSStefano Zampini PetscCall(PetscHMapAuxGetSize(dm->auxData, &n)); 9395d705d0eaSStefano Zampini PetscCall(PetscMalloc1(n, &auxData)); 9396e4d5475eSStefano Zampini PetscCall(PetscHMapAuxGetVals(dm->auxData, &off, auxData)); 9397d705d0eaSStefano Zampini for (i = 0; i < n; ++i) PetscCall(VecDestroy(&auxData[i])); 9398d705d0eaSStefano Zampini PetscCall(PetscFree(auxData)); 9399e4d5475eSStefano Zampini PetscCall(PetscHMapAuxDestroy(&dm->auxData)); 9400e4d5475eSStefano Zampini PetscCall(PetscHMapAuxCreate(&dm->auxData)); 94013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 94029a2a23afSMatthew G. Knepley } 9403b5a892a1SMatthew G. Knepley 9404cc4c1da9SBarry Smith /*@ 9405bb7acecfSBarry Smith DMPolytopeMatchOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9406b5a892a1SMatthew G. Knepley 940720f4b53cSBarry Smith Not Collective 9408b5a892a1SMatthew G. Knepley 9409b5a892a1SMatthew G. Knepley Input Parameters: 9410bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9411b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9412b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9413b5a892a1SMatthew G. Knepley 9414b5a892a1SMatthew G. Knepley Output Parameters: 9415bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9416b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9417b5a892a1SMatthew G. Knepley 9418b5a892a1SMatthew G. Knepley Level: advanced 9419b5a892a1SMatthew G. Knepley 9420bb7acecfSBarry Smith Note: 9421bb7acecfSBarry Smith An arrangement is a face order combined with an orientation for each face 9422bb7acecfSBarry Smith 942385036b15SMatthew G. Knepley Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2 9424bb7acecfSBarry Smith that labels each arrangement (face ordering plus orientation for each face). 9425bb7acecfSBarry Smith 9426bb7acecfSBarry Smith See `DMPolytopeMatchVertexOrientation()` to find a new vertex orientation that takes the source vertex arrangement to the target vertex arrangement 9427bb7acecfSBarry Smith 94281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetVertexOrientation()` 9429b5a892a1SMatthew G. Knepley @*/ 9430d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt, PetscBool *found) 9431d71ae5a4SJacob Faibussowitsch { 9432b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetConeSize(ct); 943385036b15SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2; 9434b5a892a1SMatthew G. Knepley PetscInt o, c; 9435b5a892a1SMatthew G. Knepley 9436b5a892a1SMatthew G. Knepley PetscFunctionBegin; 94379371c9d4SSatish Balay if (!nO) { 94389371c9d4SSatish Balay *ornt = 0; 94399371c9d4SSatish Balay *found = PETSC_TRUE; 94403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 94419371c9d4SSatish Balay } 9442b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 944385036b15SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangement(ct, o); 9444b5a892a1SMatthew G. Knepley 94459371c9d4SSatish Balay for (c = 0; c < cS; ++c) 94469371c9d4SSatish Balay if (sourceCone[arr[c * 2]] != targetCone[c]) break; 94479371c9d4SSatish Balay if (c == cS) { 94489371c9d4SSatish Balay *ornt = o; 94499371c9d4SSatish Balay break; 94509371c9d4SSatish Balay } 9451b5a892a1SMatthew G. Knepley } 9452b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 94533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9454b5a892a1SMatthew G. Knepley } 9455b5a892a1SMatthew G. Knepley 9456cc4c1da9SBarry Smith /*@ 9457bb7acecfSBarry Smith DMPolytopeGetOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9458b5a892a1SMatthew G. Knepley 945920f4b53cSBarry Smith Not Collective 9460b5a892a1SMatthew G. Knepley 9461b5a892a1SMatthew G. Knepley Input Parameters: 9462bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9463b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9464b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9465b5a892a1SMatthew G. Knepley 94662fe279fdSBarry Smith Output Parameter: 9467bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9468b5a892a1SMatthew G. Knepley 9469b5a892a1SMatthew G. Knepley Level: advanced 9470b5a892a1SMatthew G. Knepley 9471bb7acecfSBarry Smith Note: 9472bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchOrientation()` except it will generate an error if no suitable orientation can be found. 9473bb7acecfSBarry Smith 947473ff1848SBarry Smith Developer Note: 9475bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchOrientation()` and error if none is found 9476bb7acecfSBarry Smith 94771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchOrientation()`, `DMPolytopeGetVertexOrientation()`, `DMPolytopeMatchVertexOrientation()` 9478b5a892a1SMatthew G. Knepley @*/ 9479d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9480d71ae5a4SJacob Faibussowitsch { 9481b5a892a1SMatthew G. Knepley PetscBool found; 9482b5a892a1SMatthew G. Knepley 9483b5a892a1SMatthew G. Knepley PetscFunctionBegin; 94849566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchOrientation(ct, sourceCone, targetCone, ornt, &found)); 94857a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 94863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9487b5a892a1SMatthew G. Knepley } 9488b5a892a1SMatthew G. Knepley 9489cc4c1da9SBarry Smith /*@ 9490bb7acecfSBarry Smith DMPolytopeMatchVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9491b5a892a1SMatthew G. Knepley 949220f4b53cSBarry Smith Not Collective 9493b5a892a1SMatthew G. Knepley 9494b5a892a1SMatthew G. Knepley Input Parameters: 9495bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9496b5a892a1SMatthew G. Knepley . sourceVert - The source arrangement of vertices 9497b5a892a1SMatthew G. Knepley - targetVert - The target arrangement of vertices 9498b5a892a1SMatthew G. Knepley 9499b5a892a1SMatthew G. Knepley Output Parameters: 9500bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9501b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9502b5a892a1SMatthew G. Knepley 9503b5a892a1SMatthew G. Knepley Level: advanced 9504b5a892a1SMatthew G. Knepley 950573ff1848SBarry Smith Notes: 9506bb7acecfSBarry Smith An arrangement is a vertex order 9507bb7acecfSBarry Smith 950885036b15SMatthew G. Knepley Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2 9509bb7acecfSBarry Smith that labels each arrangement (vertex ordering). 9510bb7acecfSBarry Smith 9511bb7acecfSBarry Smith See `DMPolytopeMatchOrientation()` to find a new face orientation that takes the source face arrangement to the target face arrangement 9512bb7acecfSBarry Smith 951385036b15SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchOrientation()`, `DMPolytopeTypeGetNumVertices()`, `DMPolytopeTypeGetVertexArrangement()` 9514b5a892a1SMatthew G. Knepley @*/ 9515d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchVertexOrientation(DMPolytopeType ct, const PetscInt sourceVert[], const PetscInt targetVert[], PetscInt *ornt, PetscBool *found) 9516d71ae5a4SJacob Faibussowitsch { 9517b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetNumVertices(ct); 951885036b15SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2; 9519b5a892a1SMatthew G. Knepley PetscInt o, c; 9520b5a892a1SMatthew G. Knepley 9521b5a892a1SMatthew G. Knepley PetscFunctionBegin; 95229371c9d4SSatish Balay if (!nO) { 95239371c9d4SSatish Balay *ornt = 0; 95249371c9d4SSatish Balay *found = PETSC_TRUE; 95253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 95269371c9d4SSatish Balay } 9527b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 952885036b15SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetVertexArrangement(ct, o); 9529b5a892a1SMatthew G. Knepley 95309371c9d4SSatish Balay for (c = 0; c < cS; ++c) 95319371c9d4SSatish Balay if (sourceVert[arr[c]] != targetVert[c]) break; 95329371c9d4SSatish Balay if (c == cS) { 95339371c9d4SSatish Balay *ornt = o; 95349371c9d4SSatish Balay break; 95359371c9d4SSatish Balay } 9536b5a892a1SMatthew G. Knepley } 9537b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 95383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9539b5a892a1SMatthew G. Knepley } 9540b5a892a1SMatthew G. Knepley 9541cc4c1da9SBarry Smith /*@ 9542bb7acecfSBarry Smith DMPolytopeGetVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9543b5a892a1SMatthew G. Knepley 954420f4b53cSBarry Smith Not Collective 9545b5a892a1SMatthew G. Knepley 9546b5a892a1SMatthew G. Knepley Input Parameters: 9547bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9548b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of vertices 9549b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of vertices 9550b5a892a1SMatthew G. Knepley 95512fe279fdSBarry Smith Output Parameter: 9552bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9553b5a892a1SMatthew G. Knepley 9554b5a892a1SMatthew G. Knepley Level: advanced 9555b5a892a1SMatthew G. Knepley 9556bb7acecfSBarry Smith Note: 9557bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchVertexOrientation()` except it errors if not orientation is possible. 9558bb7acecfSBarry Smith 955973ff1848SBarry Smith Developer Note: 9560bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchVertexOrientation()` and error if none is found 9561bb7acecfSBarry Smith 95621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetOrientation()` 9563b5a892a1SMatthew G. Knepley @*/ 9564d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetVertexOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9565d71ae5a4SJacob Faibussowitsch { 9566b5a892a1SMatthew G. Knepley PetscBool found; 9567b5a892a1SMatthew G. Knepley 9568b5a892a1SMatthew G. Knepley PetscFunctionBegin; 95699566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchVertexOrientation(ct, sourceCone, targetCone, ornt, &found)); 95707a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 95713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9572b5a892a1SMatthew G. Knepley } 9573012bc364SMatthew G. Knepley 9574cc4c1da9SBarry Smith /*@ 9575012bc364SMatthew G. Knepley DMPolytopeInCellTest - Check whether a point lies inside the reference cell of given type 9576012bc364SMatthew G. Knepley 957720f4b53cSBarry Smith Not Collective 9578012bc364SMatthew G. Knepley 9579012bc364SMatthew G. Knepley Input Parameters: 9580bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9581012bc364SMatthew G. Knepley - point - Coordinates of the point 9582012bc364SMatthew G. Knepley 95832fe279fdSBarry Smith Output Parameter: 9584012bc364SMatthew G. Knepley . inside - Flag indicating whether the point is inside the reference cell of given type 9585012bc364SMatthew G. Knepley 9586012bc364SMatthew G. Knepley Level: advanced 9587012bc364SMatthew G. Knepley 95881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMLocatePoints()` 9589012bc364SMatthew G. Knepley @*/ 9590d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeInCellTest(DMPolytopeType ct, const PetscReal point[], PetscBool *inside) 9591d71ae5a4SJacob Faibussowitsch { 9592012bc364SMatthew G. Knepley PetscReal sum = 0.0; 9593012bc364SMatthew G. Knepley PetscInt d; 9594012bc364SMatthew G. Knepley 9595012bc364SMatthew G. Knepley PetscFunctionBegin; 9596012bc364SMatthew G. Knepley *inside = PETSC_TRUE; 9597012bc364SMatthew G. Knepley switch (ct) { 9598012bc364SMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 9599012bc364SMatthew G. Knepley case DM_POLYTOPE_TETRAHEDRON: 9600012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) { 96019371c9d4SSatish Balay if (point[d] < -1.0) { 96029371c9d4SSatish Balay *inside = PETSC_FALSE; 96039371c9d4SSatish Balay break; 96049371c9d4SSatish Balay } 9605012bc364SMatthew G. Knepley sum += point[d]; 9606012bc364SMatthew G. Knepley } 96079371c9d4SSatish Balay if (sum > PETSC_SMALL) { 96089371c9d4SSatish Balay *inside = PETSC_FALSE; 96099371c9d4SSatish Balay break; 96109371c9d4SSatish Balay } 9611012bc364SMatthew G. Knepley break; 9612012bc364SMatthew G. Knepley case DM_POLYTOPE_QUADRILATERAL: 9613012bc364SMatthew G. Knepley case DM_POLYTOPE_HEXAHEDRON: 9614012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) 96159371c9d4SSatish Balay if (PetscAbsReal(point[d]) > 1. + PETSC_SMALL) { 96169371c9d4SSatish Balay *inside = PETSC_FALSE; 9617012bc364SMatthew G. Knepley break; 96189371c9d4SSatish Balay } 96199371c9d4SSatish Balay break; 9620d71ae5a4SJacob Faibussowitsch default: 9621d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported polytope type %s", DMPolytopeTypes[ct]); 9622012bc364SMatthew G. Knepley } 96233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9624012bc364SMatthew G. Knepley } 9625adc21957SMatthew G. Knepley 9626adc21957SMatthew G. Knepley /*@ 9627adc21957SMatthew G. Knepley DMReorderSectionSetDefault - Set flag indicating whether the local section should be reordered by default 9628adc21957SMatthew G. Knepley 9629adc21957SMatthew G. Knepley Logically collective 9630adc21957SMatthew G. Knepley 9631adc21957SMatthew G. Knepley Input Parameters: 9632adc21957SMatthew G. Knepley + dm - The DM 9633adc21957SMatthew G. Knepley - reorder - Flag for reordering 9634adc21957SMatthew G. Knepley 9635adc21957SMatthew G. Knepley Level: intermediate 9636adc21957SMatthew G. Knepley 9637adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetDefault()` 9638adc21957SMatthew G. Knepley @*/ 9639adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetDefault(DM dm, DMReorderDefaultFlag reorder) 9640adc21957SMatthew G. Knepley { 9641adc21957SMatthew G. Knepley PetscFunctionBegin; 9642adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9643adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionSetDefault_C", (DM, DMReorderDefaultFlag), (dm, reorder)); 9644adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9645adc21957SMatthew G. Knepley } 9646adc21957SMatthew G. Knepley 9647adc21957SMatthew G. Knepley /*@ 9648adc21957SMatthew G. Knepley DMReorderSectionGetDefault - Get flag indicating whether the local section should be reordered by default 9649adc21957SMatthew G. Knepley 9650adc21957SMatthew G. Knepley Not collective 9651adc21957SMatthew G. Knepley 9652adc21957SMatthew G. Knepley Input Parameter: 9653adc21957SMatthew G. Knepley . dm - The DM 9654adc21957SMatthew G. Knepley 9655adc21957SMatthew G. Knepley Output Parameter: 9656adc21957SMatthew G. Knepley . reorder - Flag for reordering 9657adc21957SMatthew G. Knepley 9658adc21957SMatthew G. Knepley Level: intermediate 9659adc21957SMatthew G. Knepley 9660adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()` 9661adc21957SMatthew G. Knepley @*/ 9662adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetDefault(DM dm, DMReorderDefaultFlag *reorder) 9663adc21957SMatthew G. Knepley { 9664adc21957SMatthew G. Knepley PetscFunctionBegin; 9665adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9666adc21957SMatthew G. Knepley PetscAssertPointer(reorder, 2); 9667adc21957SMatthew G. Knepley *reorder = DM_REORDER_DEFAULT_NOTSET; 9668adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionGetDefault_C", (DM, DMReorderDefaultFlag *), (dm, reorder)); 9669adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9670adc21957SMatthew G. Knepley } 9671adc21957SMatthew G. Knepley 9672cc4c1da9SBarry Smith /*@ 9673adc21957SMatthew G. Knepley DMReorderSectionSetType - Set the type of local section reordering 9674adc21957SMatthew G. Knepley 9675adc21957SMatthew G. Knepley Logically collective 9676adc21957SMatthew G. Knepley 9677adc21957SMatthew G. Knepley Input Parameters: 9678adc21957SMatthew G. Knepley + dm - The DM 9679adc21957SMatthew G. Knepley - reorder - The reordering method 9680adc21957SMatthew G. Knepley 9681adc21957SMatthew G. Knepley Level: intermediate 9682adc21957SMatthew G. Knepley 9683adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetType()`, `DMReorderSectionSetDefault()` 9684adc21957SMatthew G. Knepley @*/ 9685adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetType(DM dm, MatOrderingType reorder) 9686adc21957SMatthew G. Knepley { 9687adc21957SMatthew G. Knepley PetscFunctionBegin; 9688adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9689adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionSetType_C", (DM, MatOrderingType), (dm, reorder)); 9690adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9691adc21957SMatthew G. Knepley } 9692adc21957SMatthew G. Knepley 9693cc4c1da9SBarry Smith /*@ 9694adc21957SMatthew G. Knepley DMReorderSectionGetType - Get the reordering type for the local section 9695adc21957SMatthew G. Knepley 9696adc21957SMatthew G. Knepley Not collective 9697adc21957SMatthew G. Knepley 9698adc21957SMatthew G. Knepley Input Parameter: 9699adc21957SMatthew G. Knepley . dm - The DM 9700adc21957SMatthew G. Knepley 9701adc21957SMatthew G. Knepley Output Parameter: 9702adc21957SMatthew G. Knepley . reorder - The reordering method 9703adc21957SMatthew G. Knepley 9704adc21957SMatthew G. Knepley Level: intermediate 9705adc21957SMatthew G. Knepley 9706adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()`, `DMReorderSectionGetDefault()` 9707adc21957SMatthew G. Knepley @*/ 9708adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetType(DM dm, MatOrderingType *reorder) 9709adc21957SMatthew G. Knepley { 9710adc21957SMatthew G. Knepley PetscFunctionBegin; 9711adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9712adc21957SMatthew G. Knepley PetscAssertPointer(reorder, 2); 9713adc21957SMatthew G. Knepley *reorder = NULL; 9714adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionGetType_C", (DM, MatOrderingType *), (dm, reorder)); 9715adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9716adc21957SMatthew G. Knepley } 9717