1d0295fc0SJunchao Zhang #include <petscvec.h> 2af0996ceSBarry Smith #include <petsc/private/dmimpl.h> /*I "petscdm.h" I*/ 3c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 4e6f8dbb6SToby Isaac #include <petsc/private/petscdsimpl.h> /*I "petscds.h" I*/ 53e922f36SToby Isaac #include <petscdmplex.h> 6d2b2dc1eSMatthew G. Knepley #include <petscdmceed.h> 7f19dbd58SToby Isaac #include <petscdmfield.h> 80c312b8eSJed Brown #include <petscsf.h> 92764a2aaSMatthew G. Knepley #include <petscds.h> 1047c6ae99SBarry Smith 11f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 12f918ec44SMatthew G. Knepley #include <petscfeceed.h> 13f918ec44SMatthew G. Knepley #endif 14f918ec44SMatthew G. Knepley 15732e2eb9SMatthew G Knepley PetscClassId DM_CLASSID; 16d67d17b1SMatthew G. Knepley PetscClassId DMLABEL_CLASSID; 1742d0c57aSJames Wright PetscLogEvent DM_Convert, DM_GlobalToLocal, DM_LocalToGlobal, DM_LocalToLocal, DM_LocatePoints, DM_Coarsen, DM_Refine, DM_CreateInterpolation, DM_CreateRestriction, DM_CreateInjection, DM_CreateMatrix, DM_CreateMassMatrix, DM_Load, DM_View, DM_AdaptInterpolator, DM_ProjectFunction; 1867a56275SMatthew G Knepley 19ea78f98cSLisandro Dalcin const char *const DMBoundaryTypes[] = {"NONE", "GHOSTED", "MIRROR", "PERIODIC", "TWIST", "DMBoundaryType", "DM_BOUNDARY_", NULL}; 20d1b3049bSMatthew G. Knepley const char *const DMBoundaryConditionTypes[] = {"INVALID", "ESSENTIAL", "NATURAL", "INVALID", "INVALID", "ESSENTIAL_FIELD", "NATURAL_FIELD", "INVALID", "INVALID", "ESSENTIAL_BD_FIELD", "NATURAL_RIEMANN", "DMBoundaryConditionType", "DM_BC_", NULL}; 210e762ea3SJed Brown const char *const DMBlockingTypes[] = {"TOPOLOGICAL_POINT", "FIELD_NODE", "DMBlockingType", "DM_BLOCKING_", NULL}; 22476787b7SMatthew G. Knepley const char *const DMPolytopeTypes[] = 23476787b7SMatthew G. Knepley {"vertex", "segment", "tensor_segment", "triangle", "quadrilateral", "tensor_quad", "tetrahedron", "hexahedron", "triangular_prism", "tensor_triangular_prism", "tensor_quadrilateral_prism", "pyramid", "FV_ghost_cell", "interior_ghost_cell", 24476787b7SMatthew G. Knepley "unknown", "unknown_cell", "unknown_face", "invalid", "DMPolytopeType", "DM_POLYTOPE_", NULL}; 252cbb9b06SVaclav Hapla const char *const DMCopyLabelsModes[] = {"replace", "keep", "fail", "DMCopyLabelsMode", "DM_COPY_LABELS_", NULL}; 2660c22052SBarry Smith 27a4121054SBarry Smith /*@ 28bb7acecfSBarry Smith DMCreate - Creates an empty `DM` object. `DM`s are the abstract objects in PETSc that mediate between meshes and discretizations and the 290b4b7b1cSBarry Smith algebraic solvers, time integrators, and optimization algorithms in PETSc. 30a4121054SBarry Smith 31d083f849SBarry Smith Collective 32a4121054SBarry Smith 33a4121054SBarry Smith Input Parameter: 34bb7acecfSBarry Smith . comm - The communicator for the `DM` object 35a4121054SBarry Smith 36a4121054SBarry Smith Output Parameter: 37bb7acecfSBarry Smith . dm - The `DM` object 38a4121054SBarry Smith 39a4121054SBarry Smith Level: beginner 40a4121054SBarry Smith 41bb7acecfSBarry Smith Notes: 42bb7acecfSBarry Smith See `DMType` for a brief summary of available `DM`. 43bb7acecfSBarry Smith 44bb7acecfSBarry Smith The type must then be set with `DMSetType()`. If you never call `DMSetType()` it will generate an 450b4b7b1cSBarry Smith error when you try to use the `dm`. 460b4b7b1cSBarry Smith 470b4b7b1cSBarry Smith `DM` is an orphan initialism or orphan acronym, the letters have no meaning and never did. 48bb7acecfSBarry Smith 491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMType`, `DMDACreate()`, `DMDA`, `DMSLICED`, `DMCOMPOSITE`, `DMPLEX`, `DMMOAB`, `DMNETWORK` 50a4121054SBarry Smith @*/ 51d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreate(MPI_Comm comm, DM *dm) 52d71ae5a4SJacob Faibussowitsch { 53a4121054SBarry Smith DM v; 54e5e52638SMatthew G. Knepley PetscDS ds; 55a4121054SBarry Smith 56a4121054SBarry Smith PetscFunctionBegin; 574f572ea9SToby Isaac PetscAssertPointer(dm, 2); 58377f809aSBarry Smith 599566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 609566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(v, DM_CLASSID, "DM", "Distribution Manager", "DM", comm, DMDestroy, DMView)); 6162e5d2d2SJDBetteridge ((PetscObject)v)->non_cyclic_references = &DMCountNonCyclicReferences; 6249be4549SMatthew G. Knepley v->setupcalled = PETSC_FALSE; 6349be4549SMatthew G. Knepley v->setfromoptionscalled = PETSC_FALSE; 640298fd71SBarry Smith v->ltogmap = NULL; 65a4ea9b21SRichard Tran Mills v->bind_below = 0; 661411c6eeSJed Brown v->bs = 1; 67171400e9SBarry Smith v->coloringtype = IS_COLORING_GLOBAL; 689566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sf)); 699566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sectionSF)); 70c58f1c22SToby Isaac v->labels = NULL; 7134aa8a36SMatthew G. Knepley v->adjacency[0] = PETSC_FALSE; 7234aa8a36SMatthew G. Knepley v->adjacency[1] = PETSC_TRUE; 73c58f1c22SToby Isaac v->depthLabel = NULL; 74ba2698f1SMatthew G. Knepley v->celltypeLabel = NULL; 751bb6d2a8SBarry Smith v->localSection = NULL; 761bb6d2a8SBarry Smith v->globalSection = NULL; 773b8ba7d1SJed Brown v->defaultConstraint.section = NULL; 783b8ba7d1SJed Brown v->defaultConstraint.mat = NULL; 7979769bd5SJed Brown v->defaultConstraint.bias = NULL; 806858538eSMatthew G. Knepley v->coordinates[0].dim = PETSC_DEFAULT; 816858538eSMatthew G. Knepley v->coordinates[1].dim = PETSC_DEFAULT; 826858538eSMatthew G. Knepley v->sparseLocalize = PETSC_TRUE; 8396173672SStefano Zampini v->dim = PETSC_DETERMINE; 84435a35e8SMatthew G Knepley { 85435a35e8SMatthew G Knepley PetscInt i; 86435a35e8SMatthew G Knepley for (i = 0; i < 10; ++i) { 870298fd71SBarry Smith v->nullspaceConstructors[i] = NULL; 88f9d4088aSMatthew G. Knepley v->nearnullspaceConstructors[i] = NULL; 89435a35e8SMatthew G Knepley } 90435a35e8SMatthew G Knepley } 919566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 9207218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(v, NULL, NULL, ds, NULL)); 939566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 949566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxCreate(&v->auxData)); 9514f150ffSMatthew G. Knepley v->dmBC = NULL; 96a8fb8f29SToby Isaac v->coarseMesh = NULL; 97f4d763aaSMatthew G. Knepley v->outputSequenceNum = -1; 98cdb7a50dSMatthew G. Knepley v->outputSequenceVal = 0.0; 999566063dSJacob Faibussowitsch PetscCall(DMSetVecType(v, VECSTANDARD)); 1009566063dSJacob Faibussowitsch PetscCall(DMSetMatType(v, MATAIJ)); 1014a7a4c06SLawrence Mitchell 1021411c6eeSJed Brown *dm = v; 1033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 104a4121054SBarry Smith } 105a4121054SBarry Smith 10638221697SMatthew G. Knepley /*@ 107bb7acecfSBarry Smith DMClone - Creates a `DM` object with the same topology as the original. 10838221697SMatthew G. Knepley 109d083f849SBarry Smith Collective 11038221697SMatthew G. Knepley 11138221697SMatthew G. Knepley Input Parameter: 112bb7acecfSBarry Smith . dm - The original `DM` object 11338221697SMatthew G. Knepley 11438221697SMatthew G. Knepley Output Parameter: 115bb7acecfSBarry Smith . newdm - The new `DM` object 11638221697SMatthew G. Knepley 11738221697SMatthew G. Knepley Level: beginner 11838221697SMatthew G. Knepley 1191cb8cacdSPatrick Sanan Notes: 120bb7acecfSBarry Smith For some `DM` implementations this is a shallow clone, the result of which may share (reference counted) information with its parent. For example, 121bb7acecfSBarry Smith `DMClone()` applied to a `DMPLEX` object will result in a new `DMPLEX` that shares the topology with the original `DMPLEX`. It does not 122bb7acecfSBarry Smith share the `PetscSection` of the original `DM`. 1231bb6d2a8SBarry Smith 124bb7acecfSBarry Smith The clone is considered set up if the original has been set up. 12589706ed2SPatrick Sanan 126bb7acecfSBarry Smith Use `DMConvert()` for a general way to create new `DM` from a given `DM` 127bb7acecfSBarry Smith 12860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMSetType()`, `DMSetLocalSection()`, `DMSetGlobalSection()`, `DMPLEX`, `DMConvert()` 12938221697SMatthew G. Knepley @*/ 130d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClone(DM dm, DM *newdm) 131d71ae5a4SJacob Faibussowitsch { 13238221697SMatthew G. Knepley PetscSF sf; 13338221697SMatthew G. Knepley Vec coords; 13438221697SMatthew G. Knepley void *ctx; 135ec196627SMatthew G. Knepley MatOrderingType otype; 136ec196627SMatthew G. Knepley DMReorderDefaultFlag flg; 1376858538eSMatthew G. Knepley PetscInt dim, cdim, i; 13838221697SMatthew G. Knepley 13938221697SMatthew G. Knepley PetscFunctionBegin; 14038221697SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1414f572ea9SToby Isaac PetscAssertPointer(newdm, 2); 1429566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), newdm)); 1439566063dSJacob Faibussowitsch PetscCall(DMCopyLabels(dm, *newdm, PETSC_COPY_VALUES, PETSC_TRUE, DM_COPY_LABELS_FAIL)); 144ddf8437dSMatthew G. Knepley (*newdm)->leveldown = dm->leveldown; 145ddf8437dSMatthew G. Knepley (*newdm)->levelup = dm->levelup; 146c8a6034eSMark (*newdm)->prealloc_only = dm->prealloc_only; 147fc214432SJed Brown (*newdm)->prealloc_skip = dm->prealloc_skip; 1489566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->vectype)); 1499566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*newdm)->vectype)); 1509566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->mattype)); 1519566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*newdm)->mattype)); 1529566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 1539566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*newdm, dim)); 154dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, clone, newdm); 1553f22bcbcSToby Isaac (*newdm)->setupcalled = dm->setupcalled; 1569566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 1579566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*newdm, sf)); 1589566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dm, &ctx)); 1599566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(*newdm, ctx)); 160ec196627SMatthew G. Knepley PetscCall(DMReorderSectionGetDefault(dm, &flg)); 161ec196627SMatthew G. Knepley PetscCall(DMReorderSectionSetDefault(*newdm, flg)); 162ec196627SMatthew G. Knepley PetscCall(DMReorderSectionGetType(dm, &otype)); 163ec196627SMatthew G. Knepley PetscCall(DMReorderSectionSetType(*newdm, otype)); 1646858538eSMatthew G. Knepley for (i = 0; i < 2; ++i) { 1656858538eSMatthew G. Knepley if (dm->coordinates[i].dm) { 166be4c1c3eSMatthew G. Knepley DM ncdm; 167be4c1c3eSMatthew G. Knepley PetscSection cs; 1685a0206caSToby Isaac PetscInt pEnd = -1, pEndMax = -1; 169be4c1c3eSMatthew G. Knepley 1706858538eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm->coordinates[i].dm, &cs)); 1719566063dSJacob Faibussowitsch if (cs) PetscCall(PetscSectionGetChart(cs, NULL, &pEnd)); 172462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&pEnd, &pEndMax, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 1735a0206caSToby Isaac if (pEndMax >= 0) { 1746858538eSMatthew G. Knepley PetscCall(DMClone(dm->coordinates[i].dm, &ncdm)); 1756858538eSMatthew G. Knepley PetscCall(DMCopyDisc(dm->coordinates[i].dm, ncdm)); 1769566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(ncdm, cs)); 1775e50ca95SJames Wright if (dm->coordinates[i].dm->periodic.setup) { 1785e50ca95SJames Wright ncdm->periodic.setup = dm->coordinates[i].dm->periodic.setup; 1795e50ca95SJames Wright PetscCall(ncdm->periodic.setup(ncdm)); 1805e50ca95SJames Wright } 1816858538eSMatthew G. Knepley if (i) PetscCall(DMSetCellCoordinateDM(*newdm, ncdm)); 1826858538eSMatthew G. Knepley else PetscCall(DMSetCoordinateDM(*newdm, ncdm)); 1839566063dSJacob Faibussowitsch PetscCall(DMDestroy(&ncdm)); 184be4c1c3eSMatthew G. Knepley } 185be4c1c3eSMatthew G. Knepley } 1866858538eSMatthew G. Knepley } 1879566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 1889566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*newdm, cdim)); 1899566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coords)); 19038221697SMatthew G. Knepley if (coords) { 1919566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(*newdm, coords)); 19238221697SMatthew G. Knepley } else { 1939566063dSJacob Faibussowitsch PetscCall(DMGetCoordinates(dm, &coords)); 1949566063dSJacob Faibussowitsch if (coords) PetscCall(DMSetCoordinates(*newdm, coords)); 19538221697SMatthew G. Knepley } 1966858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinatesLocal(dm, &coords)); 1976858538eSMatthew G. Knepley if (coords) { 1986858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinatesLocal(*newdm, coords)); 1996858538eSMatthew G. Knepley } else { 2006858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinates(dm, &coords)); 2016858538eSMatthew G. Knepley if (coords) PetscCall(DMSetCellCoordinates(*newdm, coords)); 2026858538eSMatthew G. Knepley } 20390b157c4SStefano Zampini { 2044fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 2056858538eSMatthew G. Knepley 2064fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 2074fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*newdm, maxCell, Lstart, L)); 208c6b900c6SMatthew G. Knepley } 20934aa8a36SMatthew G. Knepley { 21034aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 21134aa8a36SMatthew G. Knepley 2129566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, &useCone, &useClosure)); 2139566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(*newdm, PETSC_DEFAULT, useCone, useClosure)); 21434aa8a36SMatthew G. Knepley } 2153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21638221697SMatthew G. Knepley } 21738221697SMatthew G. Knepley 2185d83a8b1SBarry Smith /*@ 2195d83a8b1SBarry Smith DMSetVecType - Sets the type of vector to be created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 2209a42bb27SBarry Smith 22120f4b53cSBarry Smith Logically Collective 2229a42bb27SBarry Smith 223147403d9SBarry Smith Input Parameters: 22432546409SMatthew G. Knepley + dm - initial distributed array 225bb7acecfSBarry Smith - ctype - the vector type, for example `VECSTANDARD`, `VECCUDA`, or `VECVIENNACL` 2269a42bb27SBarry Smith 22720f4b53cSBarry Smith Options Database Key: 228147403d9SBarry Smith . -dm_vec_type ctype - the type of vector to create 2299a42bb27SBarry Smith 2309a42bb27SBarry Smith Level: intermediate 2319a42bb27SBarry Smith 23260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMGetVecType()`, `DMSetMatType()`, `DMGetMatType()`, 233bb7acecfSBarry Smith `VECSTANDARD`, `VECCUDA`, `VECVIENNACL`, `DMCreateLocalVector()`, `DMCreateGlobalVector()` 2349a42bb27SBarry Smith @*/ 23532546409SMatthew G. Knepley PetscErrorCode DMSetVecType(DM dm, VecType ctype) 236d71ae5a4SJacob Faibussowitsch { 23732546409SMatthew G. Knepley char *tmp; 23832546409SMatthew G. Knepley 2399a42bb27SBarry Smith PetscFunctionBegin; 24032546409SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 24132546409SMatthew G. Knepley PetscAssertPointer(ctype, 2); 24232546409SMatthew G. Knepley tmp = (char *)dm->vectype; 24332546409SMatthew G. Knepley PetscCall(PetscStrallocpy(ctype, (char **)&dm->vectype)); 24432546409SMatthew G. Knepley PetscCall(PetscFree(tmp)); 2453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2469a42bb27SBarry Smith } 2479a42bb27SBarry Smith 2485d83a8b1SBarry Smith /*@ 249bb7acecfSBarry Smith DMGetVecType - Gets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 250c0dedaeaSBarry Smith 25120f4b53cSBarry Smith Logically Collective 252c0dedaeaSBarry Smith 253c0dedaeaSBarry Smith Input Parameter: 254c0dedaeaSBarry Smith . da - initial distributed array 255c0dedaeaSBarry Smith 256c0dedaeaSBarry Smith Output Parameter: 257c0dedaeaSBarry Smith . ctype - the vector type 258c0dedaeaSBarry Smith 259c0dedaeaSBarry Smith Level: intermediate 260c0dedaeaSBarry Smith 26160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMSetMatType()`, `DMGetMatType()`, `DMSetVecType()` 262c0dedaeaSBarry Smith @*/ 263d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetVecType(DM da, VecType *ctype) 264d71ae5a4SJacob Faibussowitsch { 265c0dedaeaSBarry Smith PetscFunctionBegin; 266c0dedaeaSBarry Smith PetscValidHeaderSpecific(da, DM_CLASSID, 1); 267c0dedaeaSBarry Smith *ctype = da->vectype; 2683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 269c0dedaeaSBarry Smith } 270c0dedaeaSBarry Smith 2715f1ad066SMatthew G Knepley /*@ 272bb7acecfSBarry Smith VecGetDM - Gets the `DM` defining the data layout of the vector 2735f1ad066SMatthew G Knepley 27420f4b53cSBarry Smith Not Collective 2755f1ad066SMatthew G Knepley 2765f1ad066SMatthew G Knepley Input Parameter: 277bb7acecfSBarry Smith . v - The `Vec` 2785f1ad066SMatthew G Knepley 2795f1ad066SMatthew G Knepley Output Parameter: 280bb7acecfSBarry Smith . dm - The `DM` 2815f1ad066SMatthew G Knepley 2825f1ad066SMatthew G Knepley Level: intermediate 2835f1ad066SMatthew G Knepley 284bb7acecfSBarry Smith Note: 285bb7acecfSBarry Smith A `Vec` may not have a `DM` associated with it. 286bb7acecfSBarry Smith 2871cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecSetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 2885f1ad066SMatthew G Knepley @*/ 289d71ae5a4SJacob Faibussowitsch PetscErrorCode VecGetDM(Vec v, DM *dm) 290d71ae5a4SJacob Faibussowitsch { 2915f1ad066SMatthew G Knepley PetscFunctionBegin; 2925f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 2934f572ea9SToby Isaac PetscAssertPointer(dm, 2); 2949566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)v, "__PETSc_dm", (PetscObject *)dm)); 2953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2965f1ad066SMatthew G Knepley } 2975f1ad066SMatthew G Knepley 2985f1ad066SMatthew G Knepley /*@ 299bb7acecfSBarry Smith VecSetDM - Sets the `DM` defining the data layout of the vector. 3005f1ad066SMatthew G Knepley 30120f4b53cSBarry Smith Not Collective 3025f1ad066SMatthew G Knepley 3035f1ad066SMatthew G Knepley Input Parameters: 304bb7acecfSBarry Smith + v - The `Vec` 305bb7acecfSBarry Smith - dm - The `DM` 3065f1ad066SMatthew G Knepley 30720f4b53cSBarry Smith Level: developer 30820f4b53cSBarry Smith 30973ff1848SBarry Smith Notes: 310bb7acecfSBarry Smith This is rarely used, generally one uses `DMGetLocalVector()` or `DMGetGlobalVector()` to create a vector associated with a given `DM` 311d9805387SMatthew G. Knepley 312bb7acecfSBarry Smith This is NOT the same as `DMCreateGlobalVector()` since it does not change the view methods or perform other customization, but merely sets the `DM` member. 313bb7acecfSBarry Smith 3141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecGetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 3155f1ad066SMatthew G Knepley @*/ 316d71ae5a4SJacob Faibussowitsch PetscErrorCode VecSetDM(Vec v, DM dm) 317d71ae5a4SJacob Faibussowitsch { 3185f1ad066SMatthew G Knepley PetscFunctionBegin; 3195f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 320d7f50e27SLisandro Dalcin if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 3219566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)v, "__PETSc_dm", (PetscObject)dm)); 3223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3235f1ad066SMatthew G Knepley } 3245f1ad066SMatthew G Knepley 325cc4c1da9SBarry Smith /*@ 326bb7acecfSBarry Smith DMSetISColoringType - Sets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 3278f1509bcSBarry Smith 32820f4b53cSBarry Smith Logically Collective 3298f1509bcSBarry Smith 3308f1509bcSBarry Smith Input Parameters: 331bb7acecfSBarry Smith + dm - the `DM` context 3328f1509bcSBarry Smith - ctype - the matrix type 3338f1509bcSBarry Smith 33420f4b53cSBarry Smith Options Database Key: 3358f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3368f1509bcSBarry Smith 3378f1509bcSBarry Smith Level: intermediate 3388f1509bcSBarry Smith 3391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 340bb7acecfSBarry Smith `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3418f1509bcSBarry Smith @*/ 342d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetISColoringType(DM dm, ISColoringType ctype) 343d71ae5a4SJacob Faibussowitsch { 3448f1509bcSBarry Smith PetscFunctionBegin; 3458f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3468f1509bcSBarry Smith dm->coloringtype = ctype; 3473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3488f1509bcSBarry Smith } 3498f1509bcSBarry Smith 350cc4c1da9SBarry Smith /*@ 351bb7acecfSBarry Smith DMGetISColoringType - Gets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 352521d9a4cSLisandro Dalcin 35320f4b53cSBarry Smith Logically Collective 354521d9a4cSLisandro Dalcin 355521d9a4cSLisandro Dalcin Input Parameter: 356bb7acecfSBarry Smith . dm - the `DM` context 3578f1509bcSBarry Smith 3588f1509bcSBarry Smith Output Parameter: 3598f1509bcSBarry Smith . ctype - the matrix type 3608f1509bcSBarry Smith 36120f4b53cSBarry Smith Options Database Key: 3628f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3638f1509bcSBarry Smith 3648f1509bcSBarry Smith Level: intermediate 3658f1509bcSBarry Smith 3661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 36742747ad1SJacob Faibussowitsch `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3688f1509bcSBarry Smith @*/ 369d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetISColoringType(DM dm, ISColoringType *ctype) 370d71ae5a4SJacob Faibussowitsch { 3718f1509bcSBarry Smith PetscFunctionBegin; 3728f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3738f1509bcSBarry Smith *ctype = dm->coloringtype; 3743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3758f1509bcSBarry Smith } 3768f1509bcSBarry Smith 377cc4c1da9SBarry Smith /*@ 378bb7acecfSBarry Smith DMSetMatType - Sets the type of matrix created with `DMCreateMatrix()` 3798f1509bcSBarry Smith 38020f4b53cSBarry Smith Logically Collective 3818f1509bcSBarry Smith 3828f1509bcSBarry Smith Input Parameters: 383bb7acecfSBarry Smith + dm - the `DM` context 384bb7acecfSBarry Smith - ctype - the matrix type, for example `MATMPIAIJ` 385521d9a4cSLisandro Dalcin 38620f4b53cSBarry Smith Options Database Key: 387bb7acecfSBarry Smith . -dm_mat_type ctype - the type of the matrix to create, for example mpiaij 388521d9a4cSLisandro Dalcin 389521d9a4cSLisandro Dalcin Level: intermediate 390521d9a4cSLisandro Dalcin 39142747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatType`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMGetMatType()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()` 392521d9a4cSLisandro Dalcin @*/ 393d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatType(DM dm, MatType ctype) 394d71ae5a4SJacob Faibussowitsch { 39532546409SMatthew G. Knepley char *tmp; 39632546409SMatthew G. Knepley 397521d9a4cSLisandro Dalcin PetscFunctionBegin; 398521d9a4cSLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39932546409SMatthew G. Knepley PetscAssertPointer(ctype, 2); 40032546409SMatthew G. Knepley tmp = (char *)dm->mattype; 4019566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(ctype, (char **)&dm->mattype)); 40232546409SMatthew G. Knepley PetscCall(PetscFree(tmp)); 4033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 404521d9a4cSLisandro Dalcin } 405521d9a4cSLisandro Dalcin 406cc4c1da9SBarry Smith /*@ 40720f4b53cSBarry Smith DMGetMatType - Gets the type of matrix that would be created with `DMCreateMatrix()` 408c0dedaeaSBarry Smith 40920f4b53cSBarry Smith Logically Collective 410c0dedaeaSBarry Smith 411c0dedaeaSBarry Smith Input Parameter: 412bb7acecfSBarry Smith . dm - the `DM` context 413c0dedaeaSBarry Smith 414c0dedaeaSBarry Smith Output Parameter: 415c0dedaeaSBarry Smith . ctype - the matrix type 416c0dedaeaSBarry Smith 417c0dedaeaSBarry Smith Level: intermediate 418c0dedaeaSBarry Smith 41942747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMSetMatType()` 420c0dedaeaSBarry Smith @*/ 421d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetMatType(DM dm, MatType *ctype) 422d71ae5a4SJacob Faibussowitsch { 423c0dedaeaSBarry Smith PetscFunctionBegin; 424c0dedaeaSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 425c0dedaeaSBarry Smith *ctype = dm->mattype; 4263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 427c0dedaeaSBarry Smith } 428c0dedaeaSBarry Smith 429c688c046SMatthew G Knepley /*@ 430bb7acecfSBarry Smith MatGetDM - Gets the `DM` defining the data layout of the matrix 431c688c046SMatthew G Knepley 43220f4b53cSBarry Smith Not Collective 433c688c046SMatthew G Knepley 434c688c046SMatthew G Knepley Input Parameter: 435bb7acecfSBarry Smith . A - The `Mat` 436c688c046SMatthew G Knepley 437c688c046SMatthew G Knepley Output Parameter: 438bb7acecfSBarry Smith . dm - The `DM` 439c688c046SMatthew G Knepley 440c688c046SMatthew G Knepley Level: intermediate 441c688c046SMatthew G Knepley 442bb7acecfSBarry Smith Note: 443bb7acecfSBarry Smith A matrix may not have a `DM` associated with it 444bb7acecfSBarry Smith 44573ff1848SBarry Smith Developer Note: 446bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with the `Mat` through a `PetscObjectCompose()` operation 4478f1509bcSBarry Smith 4481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatSetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 449c688c046SMatthew G Knepley @*/ 450d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDM(Mat A, DM *dm) 451d71ae5a4SJacob Faibussowitsch { 452c688c046SMatthew G Knepley PetscFunctionBegin; 453c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4544f572ea9SToby Isaac PetscAssertPointer(dm, 2); 4559566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_dm", (PetscObject *)dm)); 4563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 457c688c046SMatthew G Knepley } 458c688c046SMatthew G Knepley 459c688c046SMatthew G Knepley /*@ 460bb7acecfSBarry Smith MatSetDM - Sets the `DM` defining the data layout of the matrix 461c688c046SMatthew G Knepley 46220f4b53cSBarry Smith Not Collective 463c688c046SMatthew G Knepley 464c688c046SMatthew G Knepley Input Parameters: 46520f4b53cSBarry Smith + A - The `Mat` 46620f4b53cSBarry Smith - dm - The `DM` 467c688c046SMatthew G Knepley 468bb7acecfSBarry Smith Level: developer 469c688c046SMatthew G Knepley 470bb7acecfSBarry Smith Note: 471bb7acecfSBarry Smith This is rarely used in practice, rather `DMCreateMatrix()` is used to create a matrix associated with a particular `DM` 472bb7acecfSBarry Smith 47373ff1848SBarry Smith Developer Note: 474bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with 475bb7acecfSBarry Smith the `Mat` through a `PetscObjectCompose()` operation 4768f1509bcSBarry Smith 4771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatGetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 478c688c046SMatthew G Knepley @*/ 479d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetDM(Mat A, DM dm) 480d71ae5a4SJacob Faibussowitsch { 481c688c046SMatthew G Knepley PetscFunctionBegin; 482c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4838865f1eaSKarl Rupp if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 4849566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_dm", (PetscObject)dm)); 4853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 486c688c046SMatthew G Knepley } 487c688c046SMatthew G Knepley 488cc4c1da9SBarry Smith /*@ 489bb7acecfSBarry Smith DMSetOptionsPrefix - Sets the prefix prepended to all option names when searching through the options database 4909a42bb27SBarry Smith 49120f4b53cSBarry Smith Logically Collective 4929a42bb27SBarry Smith 493d8d19677SJose E. Roman Input Parameters: 49460225df5SJacob Faibussowitsch + dm - the `DM` context 495bb7acecfSBarry Smith - prefix - the prefix to prepend 4969a42bb27SBarry Smith 49720f4b53cSBarry Smith Level: advanced 49820f4b53cSBarry Smith 49920f4b53cSBarry Smith Note: 5009a42bb27SBarry Smith A hyphen (-) must NOT be given at the beginning of the prefix name. 5019a42bb27SBarry Smith The first character of all runtime options is AUTOMATICALLY the hyphen. 5029a42bb27SBarry Smith 5031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscObjectSetOptionsPrefix()`, `DMSetFromOptions()` 5049a42bb27SBarry Smith @*/ 505d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOptionsPrefix(DM dm, const char prefix[]) 506d71ae5a4SJacob Faibussowitsch { 5079a42bb27SBarry Smith PetscFunctionBegin; 5089a42bb27SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5099566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, prefix)); 5101baa6e33SBarry Smith if (dm->sf) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sf, prefix)); 5111baa6e33SBarry Smith if (dm->sectionSF) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sectionSF, prefix)); 5123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5139a42bb27SBarry Smith } 5149a42bb27SBarry Smith 515cc4c1da9SBarry Smith /*@ 516da81f932SPierre Jolivet DMAppendOptionsPrefix - Appends an additional string to an already existing prefix used for searching for 517bb7acecfSBarry Smith `DM` options in the options database. 51831697293SDave May 51920f4b53cSBarry Smith Logically Collective 52031697293SDave May 52131697293SDave May Input Parameters: 522bb7acecfSBarry Smith + dm - the `DM` context 523bb7acecfSBarry Smith - prefix - the string to append to the current prefix 52431697293SDave May 52520f4b53cSBarry Smith Level: advanced 52620f4b53cSBarry Smith 52720f4b53cSBarry Smith Note: 528bb7acecfSBarry Smith If the `DM` does not currently have an options prefix then this value is used alone as the prefix as if `DMSetOptionsPrefix()` had been called. 52931697293SDave May A hyphen (-) must NOT be given at the beginning of the prefix name. 53031697293SDave May The first character of all runtime options is AUTOMATICALLY the hyphen. 53131697293SDave May 5321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMGetOptionsPrefix()`, `PetscObjectAppendOptionsPrefix()`, `DMSetFromOptions()` 53331697293SDave May @*/ 534d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAppendOptionsPrefix(DM dm, const char prefix[]) 535d71ae5a4SJacob Faibussowitsch { 53631697293SDave May PetscFunctionBegin; 53731697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5389566063dSJacob Faibussowitsch PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, prefix)); 5393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 54031697293SDave May } 54131697293SDave May 542cc4c1da9SBarry Smith /*@ 54331697293SDave May DMGetOptionsPrefix - Gets the prefix used for searching for all 544bb7acecfSBarry Smith DM options in the options database. 54531697293SDave May 54631697293SDave May Not Collective 54731697293SDave May 5482fe279fdSBarry Smith Input Parameter: 549bb7acecfSBarry Smith . dm - the `DM` context 55031697293SDave May 5512fe279fdSBarry Smith Output Parameter: 55231697293SDave May . prefix - pointer to the prefix string used is returned 55331697293SDave May 55431697293SDave May Level: advanced 55531697293SDave May 55673ff1848SBarry Smith Fortran Note: 55720f4b53cSBarry Smith Pass in a string 'prefix' of 55820f4b53cSBarry Smith sufficient length to hold the prefix. 55920f4b53cSBarry Smith 5601cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMAppendOptionsPrefix()`, `DMSetFromOptions()` 56131697293SDave May @*/ 562d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOptionsPrefix(DM dm, const char *prefix[]) 563d71ae5a4SJacob Faibussowitsch { 56431697293SDave May PetscFunctionBegin; 56531697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5669566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, prefix)); 5673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56831697293SDave May } 56931697293SDave May 57062e5d2d2SJDBetteridge static PetscErrorCode DMCountNonCyclicReferences_Internal(DM dm, PetscBool recurseCoarse, PetscBool recurseFine, PetscInt *ncrefct) 571d71ae5a4SJacob Faibussowitsch { 5726eb26441SStefano Zampini PetscInt refct = ((PetscObject)dm)->refct; 57388bdff64SToby Isaac 57488bdff64SToby Isaac PetscFunctionBegin; 575aab5bcd8SJed Brown *ncrefct = 0; 57688bdff64SToby Isaac if (dm->coarseMesh && dm->coarseMesh->fineMesh == dm) { 57788bdff64SToby Isaac refct--; 57888bdff64SToby Isaac if (recurseCoarse) { 57988bdff64SToby Isaac PetscInt coarseCount; 58088bdff64SToby Isaac 58162e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->coarseMesh, PETSC_TRUE, PETSC_FALSE, &coarseCount)); 58288bdff64SToby Isaac refct += coarseCount; 58388bdff64SToby Isaac } 58488bdff64SToby Isaac } 58588bdff64SToby Isaac if (dm->fineMesh && dm->fineMesh->coarseMesh == dm) { 58688bdff64SToby Isaac refct--; 58788bdff64SToby Isaac if (recurseFine) { 58888bdff64SToby Isaac PetscInt fineCount; 58988bdff64SToby Isaac 59062e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->fineMesh, PETSC_FALSE, PETSC_TRUE, &fineCount)); 59188bdff64SToby Isaac refct += fineCount; 59288bdff64SToby Isaac } 59388bdff64SToby Isaac } 59488bdff64SToby Isaac *ncrefct = refct; 5953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 59688bdff64SToby Isaac } 59788bdff64SToby Isaac 59862e5d2d2SJDBetteridge /* Generic wrapper for DMCountNonCyclicReferences_Internal() */ 59962e5d2d2SJDBetteridge PetscErrorCode DMCountNonCyclicReferences(PetscObject dm, PetscInt *ncrefct) 60062e5d2d2SJDBetteridge { 60162e5d2d2SJDBetteridge PetscFunctionBegin; 60262e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal((DM)dm, PETSC_TRUE, PETSC_TRUE, ncrefct)); 6033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 60462e5d2d2SJDBetteridge } 60562e5d2d2SJDBetteridge 606d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyLabelLinkList_Internal(DM dm) 607d71ae5a4SJacob Faibussowitsch { 6085d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 609354557abSToby Isaac 610354557abSToby Isaac PetscFunctionBegin; 611354557abSToby Isaac /* destroy the labels */ 612354557abSToby Isaac while (next) { 613354557abSToby Isaac DMLabelLink tmp = next->next; 614354557abSToby Isaac 6155d80c0bfSVaclav Hapla if (next->label == dm->depthLabel) dm->depthLabel = NULL; 616ba2698f1SMatthew G. Knepley if (next->label == dm->celltypeLabel) dm->celltypeLabel = NULL; 6179566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 6189566063dSJacob Faibussowitsch PetscCall(PetscFree(next)); 619354557abSToby Isaac next = tmp; 620354557abSToby Isaac } 6215d80c0bfSVaclav Hapla dm->labels = NULL; 6223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 623354557abSToby Isaac } 624354557abSToby Isaac 62566976f2fSJacob Faibussowitsch static PetscErrorCode DMDestroyCoordinates_Private(DMCoordinates *c) 626d71ae5a4SJacob Faibussowitsch { 6276858538eSMatthew G. Knepley PetscFunctionBegin; 6286858538eSMatthew G. Knepley c->dim = PETSC_DEFAULT; 6296858538eSMatthew G. Knepley PetscCall(DMDestroy(&c->dm)); 6306858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->x)); 6316858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->xl)); 6326858538eSMatthew G. Knepley PetscCall(DMFieldDestroy(&c->field)); 6333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6346858538eSMatthew G. Knepley } 6356858538eSMatthew G. Knepley 6360764c050SBarry Smith /*@ 637bb7acecfSBarry Smith DMDestroy - Destroys a `DM`. 63847c6ae99SBarry Smith 63920f4b53cSBarry Smith Collective 64047c6ae99SBarry Smith 64147c6ae99SBarry Smith Input Parameter: 642bb7acecfSBarry Smith . dm - the `DM` object to destroy 64347c6ae99SBarry Smith 64447c6ae99SBarry Smith Level: developer 64547c6ae99SBarry Smith 6461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMType`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 64747c6ae99SBarry Smith @*/ 648d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroy(DM *dm) 649d71ae5a4SJacob Faibussowitsch { 6506eb26441SStefano Zampini PetscInt cnt; 65147c6ae99SBarry Smith 65247c6ae99SBarry Smith PetscFunctionBegin; 6533ba16761SJacob Faibussowitsch if (!*dm) PetscFunctionReturn(PETSC_SUCCESS); 654f4f49eeaSPierre Jolivet PetscValidHeaderSpecific(*dm, DM_CLASSID, 1); 65587e657c6SBarry Smith 65688bdff64SToby Isaac /* count all non-cyclic references in the doubly-linked list of coarse<->fine meshes */ 65762e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(*dm, PETSC_TRUE, PETSC_TRUE, &cnt)); 658f4f49eeaSPierre Jolivet --((PetscObject)*dm)->refct; 6599371c9d4SSatish Balay if (--cnt > 0) { 6609371c9d4SSatish Balay *dm = NULL; 6613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6629371c9d4SSatish Balay } 663f4f49eeaSPierre Jolivet if (((PetscObject)*dm)->refct < 0) PetscFunctionReturn(PETSC_SUCCESS); 664f4f49eeaSPierre Jolivet ((PetscObject)*dm)->refct = 0; 6656eb26441SStefano Zampini 6669566063dSJacob Faibussowitsch PetscCall(DMClearGlobalVectors(*dm)); 6679566063dSJacob Faibussowitsch PetscCall(DMClearLocalVectors(*dm)); 668974ca4ecSStefano Zampini PetscCall(DMClearNamedGlobalVectors(*dm)); 669974ca4ecSStefano Zampini PetscCall(DMClearNamedLocalVectors(*dm)); 6702348bcf4SPeter Brune 671b17ce1afSJed Brown /* Destroy the list of hooks */ 672c833c3b5SJed Brown { 673c833c3b5SJed Brown DMCoarsenHookLink link, next; 674b17ce1afSJed Brown for (link = (*dm)->coarsenhook; link; link = next) { 675b17ce1afSJed Brown next = link->next; 6769566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 677b17ce1afSJed Brown } 6780298fd71SBarry Smith (*dm)->coarsenhook = NULL; 679c833c3b5SJed Brown } 680c833c3b5SJed Brown { 681c833c3b5SJed Brown DMRefineHookLink link, next; 682c833c3b5SJed Brown for (link = (*dm)->refinehook; link; link = next) { 683c833c3b5SJed Brown next = link->next; 6849566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 685c833c3b5SJed Brown } 6860298fd71SBarry Smith (*dm)->refinehook = NULL; 687c833c3b5SJed Brown } 688be081cd6SPeter Brune { 689be081cd6SPeter Brune DMSubDomainHookLink link, next; 690be081cd6SPeter Brune for (link = (*dm)->subdomainhook; link; link = next) { 691be081cd6SPeter Brune next = link->next; 6929566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 693be081cd6SPeter Brune } 6940298fd71SBarry Smith (*dm)->subdomainhook = NULL; 695be081cd6SPeter Brune } 696baf369e7SPeter Brune { 697baf369e7SPeter Brune DMGlobalToLocalHookLink link, next; 698baf369e7SPeter Brune for (link = (*dm)->gtolhook; link; link = next) { 699baf369e7SPeter Brune next = link->next; 7009566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 701baf369e7SPeter Brune } 7020298fd71SBarry Smith (*dm)->gtolhook = NULL; 703baf369e7SPeter Brune } 704d4d07f1eSToby Isaac { 705d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, next; 706d4d07f1eSToby Isaac for (link = (*dm)->ltoghook; link; link = next) { 707d4d07f1eSToby Isaac next = link->next; 7089566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 709d4d07f1eSToby Isaac } 710d4d07f1eSToby Isaac (*dm)->ltoghook = NULL; 711d4d07f1eSToby Isaac } 712aa1993deSMatthew G Knepley /* Destroy the work arrays */ 713aa1993deSMatthew G Knepley { 714aa1993deSMatthew G Knepley DMWorkLink link, next; 715835f2295SStefano Zampini PetscCheck(!(*dm)->workout, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Work array still checked out %p %p", (void *)(*dm)->workout, (*dm)->workout->mem); 716aa1993deSMatthew G Knepley for (link = (*dm)->workin; link; link = next) { 717aa1993deSMatthew G Knepley next = link->next; 7189566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 7199566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 720aa1993deSMatthew G Knepley } 7210298fd71SBarry Smith (*dm)->workin = NULL; 722aa1993deSMatthew G Knepley } 723c58f1c22SToby Isaac /* destroy the labels */ 7249566063dSJacob Faibussowitsch PetscCall(DMDestroyLabelLinkList_Internal(*dm)); 725f4cdcedcSVaclav Hapla /* destroy the fields */ 7269566063dSJacob Faibussowitsch PetscCall(DMClearFields(*dm)); 727f4cdcedcSVaclav Hapla /* destroy the boundaries */ 728e6f8dbb6SToby Isaac { 729e6f8dbb6SToby Isaac DMBoundary next = (*dm)->boundary; 730e6f8dbb6SToby Isaac while (next) { 731e6f8dbb6SToby Isaac DMBoundary b = next; 732e6f8dbb6SToby Isaac 733e6f8dbb6SToby Isaac next = b->next; 7349566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 735e6f8dbb6SToby Isaac } 736e6f8dbb6SToby Isaac } 737b17ce1afSJed Brown 7389566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmksp)); 7399566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmsnes)); 7409566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmts)); 74152536dc3SBarry Smith 74248a46eb9SPierre Jolivet if ((*dm)->ctx && (*dm)->ctxdestroy) PetscCall((*(*dm)->ctxdestroy)(&(*dm)->ctx)); 7439566063dSJacob Faibussowitsch PetscCall(MatFDColoringDestroy(&(*dm)->fd)); 7449566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&(*dm)->ltogmap)); 7459566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->vectype)); 7469566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->mattype)); 74788ed4aceSMatthew G Knepley 7489566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->localSection)); 7499566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->globalSection)); 750adc21957SMatthew G. Knepley PetscCall(PetscFree((*dm)->reorderSectionType)); 7519566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&(*dm)->map)); 7529566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->defaultConstraint.section)); 7539566063dSJacob Faibussowitsch PetscCall(MatDestroy(&(*dm)->defaultConstraint.mat)); 7549566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sf)); 7559566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sectionSF)); 75648a46eb9SPierre Jolivet if ((*dm)->sfNatural) PetscCall(PetscSFDestroy(&(*dm)->sfNatural)); 7579566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)(*dm)->sfMigration)); 758e4d5475eSStefano Zampini PetscCall(DMClearAuxiliaryVec(*dm)); 7599566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDestroy(&(*dm)->auxData)); 76048a46eb9SPierre Jolivet if ((*dm)->coarseMesh && (*dm)->coarseMesh->fineMesh == *dm) PetscCall(DMSetFineDM((*dm)->coarseMesh, NULL)); 7616eb26441SStefano Zampini 7629566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->coarseMesh)); 76348a46eb9SPierre Jolivet if ((*dm)->fineMesh && (*dm)->fineMesh->coarseMesh == *dm) PetscCall(DMSetCoarseDM((*dm)->fineMesh, NULL)); 7649566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->fineMesh)); 7654fb89dddSMatthew G. Knepley PetscCall(PetscFree((*dm)->Lstart)); 7669566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->L)); 7679566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->maxCell)); 7686858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[0])); 7696858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[1])); 7709566063dSJacob Faibussowitsch if ((*dm)->transformDestroy) PetscCall((*(*dm)->transformDestroy)(*dm, (*dm)->transformCtx)); 7719566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->transformDM)); 7729566063dSJacob Faibussowitsch PetscCall(VecDestroy(&(*dm)->transform)); 773ddedc8f6SJames Wright for (PetscInt i = 0; i < (*dm)->periodic.num_affines; i++) { 774ddedc8f6SJames Wright PetscCall(VecScatterDestroy(&(*dm)->periodic.affine_to_local[i])); 775ddedc8f6SJames Wright PetscCall(VecDestroy(&(*dm)->periodic.affine[i])); 776ddedc8f6SJames Wright } 777ddedc8f6SJames Wright if ((*dm)->periodic.num_affines > 0) PetscCall(PetscFree2((*dm)->periodic.affine_to_local, (*dm)->periodic.affine)); 7786636e97aSMatthew G Knepley 7799566063dSJacob Faibussowitsch PetscCall(DMClearDS(*dm)); 7809566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->dmBC)); 781e04113cfSBarry Smith /* if memory was published with SAWs then destroy it */ 7829566063dSJacob Faibussowitsch PetscCall(PetscObjectSAWsViewOff((PetscObject)*dm)); 783732e2eb9SMatthew G Knepley 784213acdd3SPierre Jolivet PetscTryTypeMethod(*dm, destroy); 7859566063dSJacob Faibussowitsch PetscCall(DMMonitorCancel(*dm)); 786d2b2dc1eSMatthew G. Knepley PetscCall(DMCeedDestroy(&(*dm)->dmceed)); 787f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 7889566063dSJacob Faibussowitsch PetscCallCEED(CeedElemRestrictionDestroy(&(*dm)->ceedERestrict)); 7899566063dSJacob Faibussowitsch PetscCallCEED(CeedDestroy(&(*dm)->ceed)); 790f918ec44SMatthew G. Knepley #endif 791435a35e8SMatthew G Knepley /* We do not destroy (*dm)->data here so that we can reference count backend objects */ 7929566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(dm)); 7933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 79447c6ae99SBarry Smith } 79547c6ae99SBarry Smith 796d7bf68aeSBarry Smith /*@ 797bb7acecfSBarry Smith DMSetUp - sets up the data structures inside a `DM` object 798d7bf68aeSBarry Smith 79920f4b53cSBarry Smith Collective 800d7bf68aeSBarry Smith 801d7bf68aeSBarry Smith Input Parameter: 802bb7acecfSBarry Smith . dm - the `DM` object to setup 803d7bf68aeSBarry Smith 804bb7acecfSBarry Smith Level: intermediate 805d7bf68aeSBarry Smith 806bb7acecfSBarry Smith Note: 807bb7acecfSBarry Smith This is usually called after various parameter setting operations and `DMSetFromOptions()` are called on the `DM` 808bb7acecfSBarry Smith 8091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 810d7bf68aeSBarry Smith @*/ 811d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUp(DM dm) 812d71ae5a4SJacob Faibussowitsch { 813d7bf68aeSBarry Smith PetscFunctionBegin; 814171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8153ba16761SJacob Faibussowitsch if (dm->setupcalled) PetscFunctionReturn(PETSC_SUCCESS); 816dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setup); 8178387afaaSJed Brown dm->setupcalled = PETSC_TRUE; 8183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 819d7bf68aeSBarry Smith } 820d7bf68aeSBarry Smith 821d7bf68aeSBarry Smith /*@ 822bb7acecfSBarry Smith DMSetFromOptions - sets parameters in a `DM` from the options database 823d7bf68aeSBarry Smith 82420f4b53cSBarry Smith Collective 825d7bf68aeSBarry Smith 826d7bf68aeSBarry Smith Input Parameter: 827bb7acecfSBarry Smith . dm - the `DM` object to set options for 828d7bf68aeSBarry Smith 82920f4b53cSBarry Smith Options Database Keys: 830bb7acecfSBarry Smith + -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 831bb7acecfSBarry Smith . -dm_vec_type <type> - type of vector to create inside `DM` 832bb7acecfSBarry Smith . -dm_mat_type <type> - type of matrix to create inside `DM` 833a4ea9b21SRichard Tran Mills . -dm_is_coloring_type - <global or local> 83420f4b53cSBarry Smith . -dm_bind_below <n> - bind (force execution on CPU) for `Vec` and `Mat` objects with local size (number of vector entries or matrix rows) below n; currently only supported for `DMDA` 83522d6dc08SStefano Zampini . -dm_plex_option_phases <ph0_, ph1_, ...> - List of prefixes for option processing phases 83620f4b53cSBarry Smith . -dm_plex_filename <str> - File containing a mesh 8379318fe57SMatthew G. Knepley . -dm_plex_boundary_filename <str> - File containing a mesh boundary 838cd7e8a5eSksagiyam . -dm_plex_name <str> - Name of the mesh in the file 8395dca41c3SJed Brown . -dm_plex_shape <shape> - The domain shape, such as `BOX`, `SPHERE`, etc. 8409318fe57SMatthew G. Knepley . -dm_plex_cell <ct> - Cell shape 8419318fe57SMatthew G. Knepley . -dm_plex_reference_cell_domain <bool> - Use a reference cell domain 8429318fe57SMatthew G. Knepley . -dm_plex_dim <dim> - Set the topological dimension 843bb7acecfSBarry Smith . -dm_plex_simplex <bool> - `PETSC_TRUE` for simplex elements, `PETSC_FALSE` for tensor elements 844bb7acecfSBarry Smith . -dm_plex_interpolate <bool> - `PETSC_TRUE` turns on topological interpolation (creating edges and faces) 845b9da1bb3SMatthew G. Knepley . -dm_plex_orient <bool> - `PETSC_TRUE` turns on topological orientation (flipping edges and faces) 8469318fe57SMatthew G. Knepley . -dm_plex_scale <sc> - Scale factor for mesh coordinates 847be664eb1SMatthew G. Knepley . -dm_coord_remap <bool> - Map coordinates using a function 848*ac9d17c7SMatthew G. Knepley . -dm_plex_coordinate_dim <dim> - Change the coordinate dimension of a mesh (usually given with cdm_ prefix) 849be664eb1SMatthew G. Knepley . -dm_coord_map <mapname> - Select a builtin coordinate map 850be664eb1SMatthew G. Knepley . -dm_coord_map_params <p0,p1,p2,...> - Set coordinate mapping parameters 8519318fe57SMatthew G. Knepley . -dm_plex_box_faces <m,n,p> - Number of faces along each dimension 8529318fe57SMatthew G. Knepley . -dm_plex_box_lower <x,y,z> - Specify lower-left-bottom coordinates for the box 8539318fe57SMatthew G. Knepley . -dm_plex_box_upper <x,y,z> - Specify upper-right-top coordinates for the box 854bb7acecfSBarry Smith . -dm_plex_box_bd <bx,by,bz> - Specify the `DMBoundaryType` for each direction 8559318fe57SMatthew G. Knepley . -dm_plex_sphere_radius <r> - The sphere radius 8569318fe57SMatthew G. Knepley . -dm_plex_ball_radius <r> - Radius of the ball 8579318fe57SMatthew G. Knepley . -dm_plex_cylinder_bd <bz> - Boundary type in the z direction 8589318fe57SMatthew G. Knepley . -dm_plex_cylinder_num_wedges <n> - Number of wedges around the cylinder 859bdf63967SMatthew G. Knepley . -dm_plex_reorder <order> - Reorder the mesh using the specified algorithm 8609318fe57SMatthew G. Knepley . -dm_refine_pre <n> - The number of refinements before distribution 8619318fe57SMatthew G. Knepley . -dm_refine_uniform_pre <bool> - Flag for uniform refinement before distribution 8629318fe57SMatthew G. Knepley . -dm_refine_volume_limit_pre <v> - The maximum cell volume after refinement before distribution 8639318fe57SMatthew G. Knepley . -dm_refine <n> - The number of refinements after distribution 864bdf63967SMatthew G. Knepley . -dm_extrude <l> - Activate extrusion and specify the number of layers to extrude 865d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thickness <t> - The total thickness of extruded layers 866d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_use_tensor <bool> - Use tensor cells when extruding 867d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_symmetric <bool> - Extrude layers symmetrically about the surface 868d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_normal <n0,...,nd> - Specify the extrusion direction 869d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thicknesses <t0,...,tl> - Specify thickness of each layer 870909dfd52SMatthew G. Knepley . -dm_plex_create_fv_ghost_cells - Flag to create finite volume ghost cells on the boundary 871909dfd52SMatthew G. Knepley . -dm_plex_fv_ghost_cells_label <name> - Label name for ghost cells boundary 8729318fe57SMatthew G. Knepley . -dm_distribute <bool> - Flag to redistribute a mesh among processes 8739318fe57SMatthew G. Knepley . -dm_distribute_overlap <n> - The size of the overlap halo 8749318fe57SMatthew G. Knepley . -dm_plex_adj_cone <bool> - Set adjacency direction 87520f4b53cSBarry Smith . -dm_plex_adj_closure <bool> - Set adjacency size 876d2b2dc1eSMatthew G. Knepley . -dm_plex_use_ceed <bool> - Use LibCEED as the FEM backend 87720f4b53cSBarry Smith . -dm_plex_check_symmetry - Check that the adjacency information in the mesh is symmetric - `DMPlexCheckSymmetry()` 878bb7acecfSBarry Smith . -dm_plex_check_skeleton - Check that each cell has the correct number of vertices (only for homogeneous simplex or tensor meshes) - `DMPlexCheckSkeleton()` 879bb7acecfSBarry Smith . -dm_plex_check_faces - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type - `DMPlexCheckFaces()` 880bb7acecfSBarry Smith . -dm_plex_check_geometry - Check that cells have positive volume - `DMPlexCheckGeometry()` 881bb7acecfSBarry Smith . -dm_plex_check_pointsf - Check some necessary conditions for `PointSF` - `DMPlexCheckPointSF()` 882bb7acecfSBarry Smith . -dm_plex_check_interface_cones - Check points on inter-partition interfaces have conforming order of cone points - `DMPlexCheckInterfaceCones()` 883384a6580SVaclav Hapla - -dm_plex_check_all - Perform all the checks above 884d7bf68aeSBarry Smith 88595eb5ee5SVaclav Hapla Level: intermediate 88695eb5ee5SVaclav Hapla 8878e704042SBarry Smith Note: 8888e704042SBarry Smith For some `DMType` such as `DMDA` this cannot be called after `DMSetUp()` has been called. 8898e704042SBarry Smith 8901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 891bb7acecfSBarry Smith `DMPlexCheckSymmetry()`, `DMPlexCheckSkeleton()`, `DMPlexCheckFaces()`, `DMPlexCheckGeometry()`, `DMPlexCheckPointSF()`, `DMPlexCheckInterfaceCones()`, 8928e704042SBarry Smith `DMSetOptionsPrefix()`, `DMType`, `DMPLEX`, `DMDA`, `DMSetUp()` 893d7bf68aeSBarry Smith @*/ 894d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFromOptions(DM dm) 895d71ae5a4SJacob Faibussowitsch { 8967781c08eSBarry Smith char typeName[256]; 897ca266f36SBarry Smith PetscBool flg; 898d7bf68aeSBarry Smith 899d7bf68aeSBarry Smith PetscFunctionBegin; 900171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 90149be4549SMatthew G. Knepley dm->setfromoptionscalled = PETSC_TRUE; 9029566063dSJacob Faibussowitsch if (dm->sf) PetscCall(PetscSFSetFromOptions(dm->sf)); 9039566063dSJacob Faibussowitsch if (dm->sectionSF) PetscCall(PetscSFSetFromOptions(dm->sectionSF)); 904dd4c3f67SMatthew G. Knepley if (dm->coordinates[0].dm) PetscCall(DMSetFromOptions(dm->coordinates[0].dm)); 905d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)dm); 9069566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_preallocate_only", "only preallocate matrix, but do not set column indices", "DMSetMatrixPreallocateOnly", dm->prealloc_only, &dm->prealloc_only, NULL)); 9079566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_vec_type", "Vector type used for created vectors", "DMSetVecType", VecList, dm->vectype, typeName, 256, &flg)); 9081baa6e33SBarry Smith if (flg) PetscCall(DMSetVecType(dm, typeName)); 9099566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_mat_type", "Matrix type used for created matrices", "DMSetMatType", MatList, dm->mattype ? dm->mattype : typeName, typeName, sizeof(typeName), &flg)); 9101baa6e33SBarry Smith if (flg) PetscCall(DMSetMatType(dm, typeName)); 911863027abSJed Brown PetscCall(PetscOptionsEnum("-dm_blocking_type", "Topological point or field node blocking", "DMSetBlockingType", DMBlockingTypes, (PetscEnum)dm->blocking_type, (PetscEnum *)&dm->blocking_type, NULL)); 9129566063dSJacob Faibussowitsch PetscCall(PetscOptionsEnum("-dm_is_coloring_type", "Global or local coloring of Jacobian", "DMSetISColoringType", ISColoringTypes, (PetscEnum)dm->coloringtype, (PetscEnum *)&dm->coloringtype, NULL)); 9139566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-dm_bind_below", "Set the size threshold (in entries) below which the Vec is bound to the CPU", "VecBindToCPU", dm->bind_below, &dm->bind_below, &flg)); 914eb9d3e4dSMatthew G. Knepley PetscCall(PetscOptionsBool("-dm_ignore_perm_output", "Ignore the local section permutation on output", "DMGetOutputDM", dm->ignorePermOutput, &dm->ignorePermOutput, NULL)); 915dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setfromoptions, PetscOptionsObject); 916f9ba7244SBarry Smith /* process any options handlers added with PetscObjectAddOptionsHandler() */ 917dbbe0bcdSBarry Smith PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)dm, PetscOptionsObject)); 918d0609cedSBarry Smith PetscOptionsEnd(); 9193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 920d7bf68aeSBarry Smith } 921d7bf68aeSBarry Smith 922ffeef943SBarry Smith /*@ 923bb7acecfSBarry Smith DMViewFromOptions - View a `DM` in a particular way based on a request in the options database 924fe2efc57SMark 92520f4b53cSBarry Smith Collective 926fe2efc57SMark 927fe2efc57SMark Input Parameters: 928bb7acecfSBarry Smith + dm - the `DM` object 92920f4b53cSBarry Smith . obj - optional object that provides the prefix for the options database (if `NULL` then the prefix in obj is used) 93060225df5SJacob Faibussowitsch - name - option string that is used to activate viewing 931fe2efc57SMark 932fe2efc57SMark Level: intermediate 933bb7acecfSBarry Smith 934bb7acecfSBarry Smith Note: 935bb7acecfSBarry Smith See `PetscObjectViewFromOptions()` for a list of values that can be provided in the options database to determine how the `DM` is viewed 936bb7acecfSBarry Smith 93760225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `PetscObjectViewFromOptions()`, `DMCreate()` 938fe2efc57SMark @*/ 939d71ae5a4SJacob Faibussowitsch PetscErrorCode DMViewFromOptions(DM dm, PetscObject obj, const char name[]) 940d71ae5a4SJacob Faibussowitsch { 941fe2efc57SMark PetscFunctionBegin; 942fe2efc57SMark PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9439566063dSJacob Faibussowitsch PetscCall(PetscObjectViewFromOptions((PetscObject)dm, obj, name)); 9443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 945fe2efc57SMark } 946fe2efc57SMark 947ffeef943SBarry Smith /*@ 948bb7acecfSBarry Smith DMView - Views a `DM`. Depending on the `PetscViewer` and its `PetscViewerFormat` it may print some ASCII information about the `DM` to the screen or a file or 949bb7acecfSBarry Smith save the `DM` in a binary file to be loaded later or create a visualization of the `DM` 95047c6ae99SBarry Smith 95120f4b53cSBarry Smith Collective 95247c6ae99SBarry Smith 953d8d19677SJose E. Roman Input Parameters: 954bb7acecfSBarry Smith + dm - the `DM` object to view 95547c6ae99SBarry Smith - v - the viewer 95647c6ae99SBarry Smith 95720f4b53cSBarry Smith Level: beginner 95820f4b53cSBarry Smith 95949c89c76SBlaise Bourdin Notes: 96049c89c76SBlaise Bourdin 96149c89c76SBlaise Bourdin `PetscViewer` = `PETSCVIEWERHDF5` i.e. HDF5 format can be used with `PETSC_VIEWER_HDF5_PETSC` as the `PetscViewerFormat` to save multiple `DMPLEX` 962bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 963bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 964cd7e8a5eSksagiyam 96549c89c76SBlaise Bourdin `PetscViewer` = `PETSCVIEWEREXODUSII` i.e. ExodusII format assumes that element blocks (mapped to "Cell sets" labels) 96649c89c76SBlaise Bourdin consists of sequentially numbered cells. 96749c89c76SBlaise Bourdin 96849c89c76SBlaise Bourdin If `dm` has been distributed, only the part of the `DM` on MPI rank 0 (including "ghost" cells and vertices) will be written. 96949c89c76SBlaise Bourdin 97049c89c76SBlaise Bourdin Only TRI, TET, QUAD, and HEX cells are supported. 97149c89c76SBlaise Bourdin 97249c89c76SBlaise Bourdin `DMPLEX` only represents geometry while most post-processing software expect that a mesh also provides information on the discretization space. This function assumes that the file represents Lagrange finite elements of order 1 or 2. 97349c89c76SBlaise Bourdin The order of the mesh shall be set using `PetscViewerExodusIISetOrder()` 97449c89c76SBlaise Bourdin 975d7c1f440SPierre Jolivet Variable names can be set and queried using `PetscViewerExodusII[Set/Get][Nodal/Zonal]VariableNames[s]`. 97649c89c76SBlaise Bourdin 9771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewer`, `PetscViewerFormat`, `PetscViewerSetFormat()`, `DMDestroy()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMLoad()`, `PetscObjectSetName()` 97847c6ae99SBarry Smith @*/ 979d71ae5a4SJacob Faibussowitsch PetscErrorCode DMView(DM dm, PetscViewer v) 980d71ae5a4SJacob Faibussowitsch { 98132c0f0efSBarry Smith PetscBool isbinary; 98276a8abe0SBarry Smith PetscMPIInt size; 98376a8abe0SBarry Smith PetscViewerFormat format; 98447c6ae99SBarry Smith 98547c6ae99SBarry Smith PetscFunctionBegin; 986171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 98748a46eb9SPierre Jolivet if (!v) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &v)); 988b1b135c8SBarry Smith PetscValidHeaderSpecific(v, PETSC_VIEWER_CLASSID, 2); 98974903a4fSStefano Zampini /* Ideally, we would like to have this test on. 99074903a4fSStefano Zampini However, it currently breaks socket viz via GLVis. 99174903a4fSStefano Zampini During DMView(parallel_mesh,glvis_viewer), each 99274903a4fSStefano Zampini process opens a sequential ASCII socket to visualize 99374903a4fSStefano Zampini the local mesh, and PetscObjectView(dm,local_socket) 99474903a4fSStefano Zampini is internally called inside VecView_GLVis, incurring 99574903a4fSStefano Zampini in an error here */ 99674903a4fSStefano Zampini /* PetscCheckSameComm(dm,1,v,2); */ 9979566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckWritable(v)); 998b1b135c8SBarry Smith 99942d0c57aSJames Wright PetscCall(PetscLogEventBegin(DM_View, v, 0, 0, 0)); 10009566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(v, &format)); 10019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 10023ba16761SJacob Faibussowitsch if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(PETSC_SUCCESS); 10039566063dSJacob Faibussowitsch PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)dm, v)); 10049566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)v, PETSCVIEWERBINARY, &isbinary)); 100532c0f0efSBarry Smith if (isbinary) { 100655849f57SBarry Smith PetscInt classid = DM_FILE_CLASSID; 100732c0f0efSBarry Smith char type[256]; 100832c0f0efSBarry Smith 10099566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, &classid, 1, PETSC_INT)); 1010c6a7a370SJeremy L Thompson PetscCall(PetscStrncpy(type, ((PetscObject)dm)->type_name, sizeof(type))); 10119566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, type, 256, PETSC_CHAR)); 101232c0f0efSBarry Smith } 1013dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, view, v); 101442d0c57aSJames Wright PetscCall(PetscLogEventEnd(DM_View, v, 0, 0, 0)); 10153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 101647c6ae99SBarry Smith } 101747c6ae99SBarry Smith 101847c6ae99SBarry Smith /*@ 1019bb7acecfSBarry Smith DMCreateGlobalVector - Creates a global vector from a `DM` object. A global vector is a parallel vector that has no duplicate values shared between MPI ranks, 1020bb7acecfSBarry Smith that is it has no ghost locations. 102147c6ae99SBarry Smith 102220f4b53cSBarry Smith Collective 102347c6ae99SBarry Smith 102447c6ae99SBarry Smith Input Parameter: 1025bb7acecfSBarry Smith . dm - the `DM` object 102647c6ae99SBarry Smith 102747c6ae99SBarry Smith Output Parameter: 102847c6ae99SBarry Smith . vec - the global vector 102947c6ae99SBarry Smith 1030073dac72SJed Brown Level: beginner 103147c6ae99SBarry Smith 10321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1033bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 103447c6ae99SBarry Smith @*/ 1035d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateGlobalVector(DM dm, Vec *vec) 1036d71ae5a4SJacob Faibussowitsch { 103747c6ae99SBarry Smith PetscFunctionBegin; 1038171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10394f572ea9SToby Isaac PetscAssertPointer(vec, 2); 1040dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createglobalvector, vec); 104176bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1042c6b011d8SStefano Zampini DM vdm; 1043c6b011d8SStefano Zampini 10449566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10457a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1046c6b011d8SStefano Zampini } 10473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 104847c6ae99SBarry Smith } 104947c6ae99SBarry Smith 105047c6ae99SBarry Smith /*@ 1051bb7acecfSBarry Smith DMCreateLocalVector - Creates a local vector from a `DM` object. 105247c6ae99SBarry Smith 105347c6ae99SBarry Smith Not Collective 105447c6ae99SBarry Smith 105547c6ae99SBarry Smith Input Parameter: 1056bb7acecfSBarry Smith . dm - the `DM` object 105747c6ae99SBarry Smith 105847c6ae99SBarry Smith Output Parameter: 105947c6ae99SBarry Smith . vec - the local vector 106047c6ae99SBarry Smith 1061073dac72SJed Brown Level: beginner 106247c6ae99SBarry Smith 106320f4b53cSBarry Smith Note: 1064bb7acecfSBarry Smith A local vector usually has ghost locations that contain values that are owned by different MPI ranks. A global vector has no ghost locations. 1065bb7acecfSBarry Smith 10661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 1067bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 106847c6ae99SBarry Smith @*/ 1069d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLocalVector(DM dm, Vec *vec) 1070d71ae5a4SJacob Faibussowitsch { 107147c6ae99SBarry Smith PetscFunctionBegin; 1072171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10734f572ea9SToby Isaac PetscAssertPointer(vec, 2); 1074dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalvector, vec); 107576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1076c6b011d8SStefano Zampini DM vdm; 1077c6b011d8SStefano Zampini 10789566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10797a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_LIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1080c6b011d8SStefano Zampini } 10813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 108247c6ae99SBarry Smith } 108347c6ae99SBarry Smith 10841411c6eeSJed Brown /*@ 1085bb7acecfSBarry Smith DMGetLocalToGlobalMapping - Accesses the local-to-global mapping in a `DM`. 10861411c6eeSJed Brown 108720f4b53cSBarry Smith Collective 10881411c6eeSJed Brown 10891411c6eeSJed Brown Input Parameter: 1090bb7acecfSBarry Smith . dm - the `DM` that provides the mapping 10911411c6eeSJed Brown 10921411c6eeSJed Brown Output Parameter: 10931411c6eeSJed Brown . ltog - the mapping 10941411c6eeSJed Brown 1095bb7acecfSBarry Smith Level: advanced 10961411c6eeSJed Brown 10971411c6eeSJed Brown Notes: 1098bb7acecfSBarry Smith The global to local mapping allows one to set values into the global vector or matrix using `VecSetValuesLocal()` and `MatSetValuesLocal()` 10991411c6eeSJed Brown 1100bb7acecfSBarry Smith Vectors obtained with `DMCreateGlobalVector()` and matrices obtained with `DMCreateMatrix()` already contain the global mapping so you do 1101bb7acecfSBarry Smith need to use this function with those objects. 1102bb7acecfSBarry Smith 1103bb7acecfSBarry Smith This mapping can then be used by `VecSetLocalToGlobalMapping()` or `MatSetLocalToGlobalMapping()`. 1104bb7acecfSBarry Smith 110560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `VecSetLocalToGlobalMapping()`, `MatSetLocalToGlobalMapping()`, 1106bb7acecfSBarry Smith `DMCreateMatrix()` 11071411c6eeSJed Brown @*/ 1108d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalToGlobalMapping(DM dm, ISLocalToGlobalMapping *ltog) 1109d71ae5a4SJacob Faibussowitsch { 11100be3e97aSMatthew G. Knepley PetscInt bs = -1, bsLocal[2], bsMinMax[2]; 11111411c6eeSJed Brown 11121411c6eeSJed Brown PetscFunctionBegin; 11131411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11144f572ea9SToby Isaac PetscAssertPointer(ltog, 2); 11151411c6eeSJed Brown if (!dm->ltogmap) { 111637d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 111737d0c07bSMatthew G Knepley 11189566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 111937d0c07bSMatthew G Knepley if (section) { 1120a974ec88SMatthew G. Knepley const PetscInt *cdofs; 112137d0c07bSMatthew G Knepley PetscInt *ltog; 1122ccf3bd66SMatthew G. Knepley PetscInt pStart, pEnd, n, p, k, l; 112337d0c07bSMatthew G Knepley 11249566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 11259566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 11269566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(section, &n)); 11279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, <og)); /* We want the local+overlap size */ 112837d0c07bSMatthew G Knepley for (p = pStart, l = 0; p < pEnd; ++p) { 1129e6befd46SJed Brown PetscInt bdof, cdof, dof, off, c, cind; 113037d0c07bSMatthew G Knepley 113137d0c07bSMatthew G Knepley /* Should probably use constrained dofs */ 11329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, p, &dof)); 11339566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(section, p, &cdof)); 11349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(section, p, &cdofs)); 11359566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &off)); 11361a7dc684SMatthew G. Knepley /* If you have dofs, and constraints, and they are unequal, we set the blocksize to 1 */ 11371a7dc684SMatthew G. Knepley bdof = cdof && (dof - cdof) ? 1 : dof; 1138ad540459SPierre Jolivet if (dof) bs = bs < 0 ? bdof : PetscGCD(bs, bdof); 11395227eafbSStefano Zampini 1140e6befd46SJed Brown for (c = 0, cind = 0; c < dof; ++c, ++l) { 11415227eafbSStefano Zampini if (cind < cdof && c == cdofs[cind]) { 1142e6befd46SJed Brown ltog[l] = off < 0 ? off - c : -(off + c + 1); 1143e6befd46SJed Brown cind++; 1144e6befd46SJed Brown } else { 11455227eafbSStefano Zampini ltog[l] = (off < 0 ? -(off + 1) : off) + c - cind; 1146e6befd46SJed Brown } 114737d0c07bSMatthew G Knepley } 114837d0c07bSMatthew G Knepley } 1149bff27382SMatthew G. Knepley /* Must have same blocksize on all procs (some might have no points) */ 11501690c2aeSBarry Smith bsLocal[0] = bs < 0 ? PETSC_INT_MAX : bs; 11519371c9d4SSatish Balay bsLocal[1] = bs; 11529566063dSJacob Faibussowitsch PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)dm), bsLocal, bsMinMax)); 11539371c9d4SSatish Balay if (bsMinMax[0] != bsMinMax[1]) { 11549371c9d4SSatish Balay bs = 1; 11559371c9d4SSatish Balay } else { 11569371c9d4SSatish Balay bs = bsMinMax[0]; 11579371c9d4SSatish Balay } 11587591dbb2SMatthew G. Knepley bs = bs < 0 ? 1 : bs; 11597591dbb2SMatthew G. Knepley /* Must reduce indices by blocksize */ 1160ccf3bd66SMatthew G. Knepley if (bs > 1) { 1161ca469d19SJed Brown for (l = 0, k = 0; l < n; l += bs, ++k) { 1162ca469d19SJed Brown // Integer division of negative values truncates toward zero(!), not toward negative infinity 1163ca469d19SJed Brown ltog[k] = ltog[l] >= 0 ? ltog[l] / bs : -(-(ltog[l] + 1) / bs + 1); 1164ca469d19SJed Brown } 1165ccf3bd66SMatthew G. Knepley n /= bs; 1166ccf3bd66SMatthew G. Knepley } 11679566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm), bs, n, ltog, PETSC_OWN_POINTER, &dm->ltogmap)); 1168dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, getlocaltoglobalmapping); 116937d0c07bSMatthew G Knepley } 11701411c6eeSJed Brown *ltog = dm->ltogmap; 11713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11721411c6eeSJed Brown } 11731411c6eeSJed Brown 11741411c6eeSJed Brown /*@ 1175bb7acecfSBarry Smith DMGetBlockSize - Gets the inherent block size associated with a `DM` 11761411c6eeSJed Brown 11771411c6eeSJed Brown Not Collective 11781411c6eeSJed Brown 11791411c6eeSJed Brown Input Parameter: 1180bb7acecfSBarry Smith . dm - the `DM` with block structure 11811411c6eeSJed Brown 11821411c6eeSJed Brown Output Parameter: 11831411c6eeSJed Brown . bs - the block size, 1 implies no exploitable block structure 11841411c6eeSJed Brown 11851411c6eeSJed Brown Level: intermediate 11861411c6eeSJed Brown 118773ff1848SBarry Smith Notes: 1188bb7acecfSBarry Smith This might be the number of degrees of freedom at each grid point for a structured grid. 1189bb7acecfSBarry Smith 1190bb7acecfSBarry Smith Complex `DM` that represent multiphysics or staggered grids or mixed-methods do not generally have a single inherent block size, but 1191bb7acecfSBarry Smith rather different locations in the vectors may have a different block size. 1192bb7acecfSBarry Smith 11931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISCreateBlock()`, `VecSetBlockSize()`, `MatSetBlockSize()`, `DMGetLocalToGlobalMapping()` 11941411c6eeSJed Brown @*/ 1195d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBlockSize(DM dm, PetscInt *bs) 1196d71ae5a4SJacob Faibussowitsch { 11971411c6eeSJed Brown PetscFunctionBegin; 11981411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11994f572ea9SToby Isaac PetscAssertPointer(bs, 2); 12007a8be351SBarry Smith PetscCheck(dm->bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM does not have enough information to provide a block size yet"); 12011411c6eeSJed Brown *bs = dm->bs; 12023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12031411c6eeSJed Brown } 12041411c6eeSJed Brown 1205ffeef943SBarry Smith /*@ 1206bb7acecfSBarry Smith DMCreateInterpolation - Gets the interpolation matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1207bb7acecfSBarry Smith `DMCreateGlobalVector()` on the coarse `DM` to similar vectors on the fine grid `DM`. 120847c6ae99SBarry Smith 120920f4b53cSBarry Smith Collective 121047c6ae99SBarry Smith 1211d8d19677SJose E. Roman Input Parameters: 1212bb7acecfSBarry Smith + dmc - the `DM` object 1213bb7acecfSBarry Smith - dmf - the second, finer `DM` object 121447c6ae99SBarry Smith 1215d8d19677SJose E. Roman Output Parameters: 121647c6ae99SBarry Smith + mat - the interpolation 1217b6971eaeSBarry Smith - vec - the scaling (optional, pass `NULL` if not needed), see `DMCreateInterpolationScale()` 121847c6ae99SBarry Smith 121947c6ae99SBarry Smith Level: developer 122047c6ae99SBarry Smith 122195452b02SPatrick Sanan Notes: 1222bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1223bb7acecfSBarry Smith DMCoarsen(). The coordinates set into the `DMDA` are completely ignored in computing the interpolation. 1224d52bd9f3SBarry Smith 1225bb7acecfSBarry Smith For `DMDA` objects you can use this interpolation (more precisely the interpolation from the `DMGetCoordinateDM()`) to interpolate the mesh coordinate 1226bb7acecfSBarry Smith vectors EXCEPT in the periodic case where it does not make sense since the coordinate vectors are not periodic. 122785afcc9aSBarry Smith 12281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolationScale()` 122947c6ae99SBarry Smith @*/ 1230d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolation(DM dmc, DM dmf, Mat *mat, Vec *vec) 1231d71ae5a4SJacob Faibussowitsch { 123247c6ae99SBarry Smith PetscFunctionBegin; 1233a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1234a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 12354f572ea9SToby Isaac PetscAssertPointer(mat, 3); 12369566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInterpolation, dmc, dmf, 0, 0)); 1237dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createinterpolation, dmf, mat, vec); 12389566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInterpolation, dmc, dmf, 0, 0)); 12393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 124047c6ae99SBarry Smith } 124147c6ae99SBarry Smith 12423ad4599aSBarry Smith /*@ 1243a4e35b19SJacob Faibussowitsch DMCreateInterpolationScale - Forms L = 1/(R*1) where 1 is the vector of all ones, and R is 1244a4e35b19SJacob Faibussowitsch the transpose of the interpolation between the `DM`. 12452ed6491fSPatrick Sanan 12462ed6491fSPatrick Sanan Input Parameters: 1247bb7acecfSBarry Smith + dac - `DM` that defines a coarse mesh 1248bb7acecfSBarry Smith . daf - `DM` that defines a fine mesh 12492ed6491fSPatrick Sanan - mat - the restriction (or interpolation operator) from fine to coarse 12502ed6491fSPatrick Sanan 12512ed6491fSPatrick Sanan Output Parameter: 12522ed6491fSPatrick Sanan . scale - the scaled vector 12532ed6491fSPatrick Sanan 1254bb7acecfSBarry Smith Level: advanced 12552ed6491fSPatrick Sanan 125673ff1848SBarry Smith Note: 1257a4e35b19SJacob Faibussowitsch xcoarse = diag(L)*R*xfine preserves scale and is thus suitable for state (versus residual) 1258a4e35b19SJacob Faibussowitsch restriction. In other words xcoarse is the coarse representation of xfine. 1259a4e35b19SJacob Faibussowitsch 126073ff1848SBarry Smith Developer Note: 1261bb7acecfSBarry Smith If the fine-scale `DMDA` has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()` 1262e9c74fd6SRichard Tran Mills on the restriction/interpolation operator to set the bindingpropagates flag to true. 1263e9c74fd6SRichard Tran Mills 126460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatRestrict()`, `MatInterpolate()`, `DMCreateInterpolation()`, `DMCreateRestriction()`, `DMCreateGlobalVector()` 12652ed6491fSPatrick Sanan @*/ 1266d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolationScale(DM dac, DM daf, Mat mat, Vec *scale) 1267d71ae5a4SJacob Faibussowitsch { 12682ed6491fSPatrick Sanan Vec fine; 12692ed6491fSPatrick Sanan PetscScalar one = 1.0; 12709704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 1271e9c74fd6SRichard Tran Mills PetscBool bindingpropagates, isbound; 12729704db99SRichard Tran Mills #endif 12732ed6491fSPatrick Sanan 12742ed6491fSPatrick Sanan PetscFunctionBegin; 12759566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(daf, &fine)); 12769566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(dac, scale)); 12779566063dSJacob Faibussowitsch PetscCall(VecSet(fine, one)); 12789704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 12799704db99SRichard Tran Mills /* If the 'fine' Vec is bound to the CPU, it makes sense to bind 'mat' as well. 12809704db99SRichard Tran Mills * Note that we only do this for the CUDA case, right now, but if we add support for MatMultTranspose() via ViennaCL, 12819704db99SRichard Tran Mills * we'll need to do it for that case, too.*/ 12829566063dSJacob Faibussowitsch PetscCall(VecGetBindingPropagates(fine, &bindingpropagates)); 1283e9c74fd6SRichard Tran Mills if (bindingpropagates) { 12849566063dSJacob Faibussowitsch PetscCall(MatSetBindingPropagates(mat, PETSC_TRUE)); 12859566063dSJacob Faibussowitsch PetscCall(VecBoundToCPU(fine, &isbound)); 12869566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mat, isbound)); 128783aa49f4SRichard Tran Mills } 12889704db99SRichard Tran Mills #endif 12899566063dSJacob Faibussowitsch PetscCall(MatRestrict(mat, fine, *scale)); 12909566063dSJacob Faibussowitsch PetscCall(VecDestroy(&fine)); 12919566063dSJacob Faibussowitsch PetscCall(VecReciprocal(*scale)); 12923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12932ed6491fSPatrick Sanan } 12942ed6491fSPatrick Sanan 12952ed6491fSPatrick Sanan /*@ 1296bb7acecfSBarry Smith DMCreateRestriction - Gets restriction matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1297bb7acecfSBarry Smith `DMCreateGlobalVector()` on the fine `DM` to similar vectors on the coarse grid `DM`. 12983ad4599aSBarry Smith 129920f4b53cSBarry Smith Collective 13003ad4599aSBarry Smith 1301d8d19677SJose E. Roman Input Parameters: 1302bb7acecfSBarry Smith + dmc - the `DM` object 1303bb7acecfSBarry Smith - dmf - the second, finer `DM` object 13043ad4599aSBarry Smith 13053ad4599aSBarry Smith Output Parameter: 13063ad4599aSBarry Smith . mat - the restriction 13073ad4599aSBarry Smith 13083ad4599aSBarry Smith Level: developer 13093ad4599aSBarry Smith 1310bb7acecfSBarry Smith Note: 1311bb7acecfSBarry Smith This only works for `DMSTAG`. For many situations either the transpose of the operator obtained with `DMCreateInterpolation()` or that 1312bb7acecfSBarry Smith matrix multiplied by the vector obtained with `DMCreateInterpolationScale()` provides the desired object. 13133ad4599aSBarry Smith 13141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRestrict()`, `DMInterpolate()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateInterpolation()` 13153ad4599aSBarry Smith @*/ 1316d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateRestriction(DM dmc, DM dmf, Mat *mat) 1317d71ae5a4SJacob Faibussowitsch { 13183ad4599aSBarry Smith PetscFunctionBegin; 1319a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1320a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 13214f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13229566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateRestriction, dmc, dmf, 0, 0)); 1323dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createrestriction, dmf, mat); 13249566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateRestriction, dmc, dmf, 0, 0)); 13253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13263ad4599aSBarry Smith } 13273ad4599aSBarry Smith 132847c6ae99SBarry Smith /*@ 1329a4e35b19SJacob Faibussowitsch DMCreateInjection - Gets injection matrix between two `DM` objects. 133047c6ae99SBarry Smith 133120f4b53cSBarry Smith Collective 133247c6ae99SBarry Smith 1333d8d19677SJose E. Roman Input Parameters: 1334bb7acecfSBarry Smith + dac - the `DM` object 1335bb7acecfSBarry Smith - daf - the second, finer `DM` object 133647c6ae99SBarry Smith 133747c6ae99SBarry Smith Output Parameter: 13386dbf9973SLawrence Mitchell . mat - the injection 133947c6ae99SBarry Smith 134047c6ae99SBarry Smith Level: developer 134147c6ae99SBarry Smith 1342a4e35b19SJacob Faibussowitsch Notes: 1343a4e35b19SJacob Faibussowitsch This is an operator that applied to a vector obtained with `DMCreateGlobalVector()` on the 1344a4e35b19SJacob Faibussowitsch fine grid maps the values to a vector on the vector on the coarse `DM` by simply selecting 1345a4e35b19SJacob Faibussowitsch the values on the coarse grid points. This compares to the operator obtained by 1346a4e35b19SJacob Faibussowitsch `DMCreateRestriction()` or the transpose of the operator obtained by 1347a4e35b19SJacob Faibussowitsch `DMCreateInterpolation()` that uses a "local weighted average" of the values around the 1348a4e35b19SJacob Faibussowitsch coarse grid point as the coarse grid value. 1349a4e35b19SJacob Faibussowitsch 1350bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1351bb7acecfSBarry Smith `DMCoarsen()`. The coordinates set into the `DMDA` are completely ignored in computing the injection. 135285afcc9aSBarry Smith 13531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateInterpolation()`, 1354bb7acecfSBarry Smith `DMCreateRestriction()`, `MatRestrict()`, `MatInterpolate()` 135547c6ae99SBarry Smith @*/ 1356d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInjection(DM dac, DM daf, Mat *mat) 1357d71ae5a4SJacob Faibussowitsch { 135847c6ae99SBarry Smith PetscFunctionBegin; 1359a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dac, DM_CLASSID, 1); 1360a5bc1bf3SBarry Smith PetscValidHeaderSpecific(daf, DM_CLASSID, 2); 13614f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13629566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInjection, dac, daf, 0, 0)); 1363dbbe0bcdSBarry Smith PetscUseTypeMethod(dac, createinjection, daf, mat); 13649566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInjection, dac, daf, 0, 0)); 13653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 136647c6ae99SBarry Smith } 136747c6ae99SBarry Smith 1368b412c318SBarry Smith /*@ 1369bb7acecfSBarry Smith DMCreateMassMatrix - Gets the mass matrix between two `DM` objects, M_ij = \int \phi_i \psi_j where the \phi are Galerkin basis functions for a 1370bb7acecfSBarry Smith a Galerkin finite element model on the `DM` 1371bd041c0cSMatthew G. Knepley 137220f4b53cSBarry Smith Collective 1373bd041c0cSMatthew G. Knepley 1374d8d19677SJose E. Roman Input Parameters: 1375bb7acecfSBarry Smith + dmc - the target `DM` object 13768c1c0954SStefano Zampini - dmf - the source `DM` object, can be `NULL` 1377bd041c0cSMatthew G. Knepley 1378bd041c0cSMatthew G. Knepley Output Parameter: 1379b4937a87SMatthew G. Knepley . mat - the mass matrix 1380bd041c0cSMatthew G. Knepley 1381bd041c0cSMatthew G. Knepley Level: developer 1382bd041c0cSMatthew G. Knepley 1383bb7acecfSBarry Smith Notes: 1384bb7acecfSBarry Smith For `DMPLEX` the finite element model for the `DM` must have been already provided. 1385bb7acecfSBarry Smith 13868c1c0954SStefano Zampini if `dmc` is `dmf` or `NULL`, then x^t M x is an approximation to the L2 norm of the vector x which is obtained by `DMCreateGlobalVector()` 1387bb7acecfSBarry Smith 138842747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrixLumped()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1389bd041c0cSMatthew G. Knepley @*/ 1390d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrix(DM dmc, DM dmf, Mat *mat) 1391d71ae5a4SJacob Faibussowitsch { 1392bd041c0cSMatthew G. Knepley PetscFunctionBegin; 1393b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 13948c1c0954SStefano Zampini if (!dmf) dmf = dmc; 1395b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 13964f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13978c1c0954SStefano Zampini PetscCall(PetscLogEventBegin(DM_CreateMassMatrix, dmc, dmf, 0, 0)); 1398dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createmassmatrix, dmf, mat); 13998c1c0954SStefano Zampini PetscCall(PetscLogEventEnd(DM_CreateMassMatrix, dmc, dmf, 0, 0)); 14003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1401b4937a87SMatthew G. Knepley } 1402b4937a87SMatthew G. Knepley 1403b4937a87SMatthew G. Knepley /*@ 1404bb7acecfSBarry Smith DMCreateMassMatrixLumped - Gets the lumped mass matrix for a given `DM` 1405b4937a87SMatthew G. Knepley 140620f4b53cSBarry Smith Collective 1407b4937a87SMatthew G. Knepley 1408b4937a87SMatthew G. Knepley Input Parameter: 1409bb7acecfSBarry Smith . dm - the `DM` object 1410b4937a87SMatthew G. Knepley 14117dcfde4dSJose E. Roman Output Parameters: 14128e9849d2SStefano Zampini + llm - the local lumped mass matrix, which is a diagonal matrix, represented as a vector 14138e9849d2SStefano Zampini - lm - the global lumped mass matrix, which is a diagonal matrix, represented as a vector 1414b4937a87SMatthew G. Knepley 1415b4937a87SMatthew G. Knepley Level: developer 1416b4937a87SMatthew G. Knepley 1417bb7acecfSBarry Smith Note: 1418bb7acecfSBarry Smith See `DMCreateMassMatrix()` for how to create the non-lumped version of the mass matrix. 1419bb7acecfSBarry Smith 142060225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrix()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1421b4937a87SMatthew G. Knepley @*/ 14228e9849d2SStefano Zampini PetscErrorCode DMCreateMassMatrixLumped(DM dm, Vec *llm, Vec *lm) 1423d71ae5a4SJacob Faibussowitsch { 1424b4937a87SMatthew G. Knepley PetscFunctionBegin; 1425b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14268e9849d2SStefano Zampini if (llm) PetscAssertPointer(llm, 2); 14278e9849d2SStefano Zampini if (lm) PetscAssertPointer(lm, 3); 14288e9849d2SStefano Zampini if (llm || lm) PetscUseTypeMethod(dm, createmassmatrixlumped, llm, lm); 14293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1430bd041c0cSMatthew G. Knepley } 1431bd041c0cSMatthew G. Knepley 1432bd041c0cSMatthew G. Knepley /*@ 1433bb7acecfSBarry Smith DMCreateColoring - Gets coloring of a graph associated with the `DM`. Often the graph represents the operator matrix associated with the discretization 1434bb7acecfSBarry Smith of a PDE on the `DM`. 143547c6ae99SBarry Smith 143620f4b53cSBarry Smith Collective 143747c6ae99SBarry Smith 1438d8d19677SJose E. Roman Input Parameters: 1439bb7acecfSBarry Smith + dm - the `DM` object 1440bb7acecfSBarry Smith - ctype - `IS_COLORING_LOCAL` or `IS_COLORING_GLOBAL` 144147c6ae99SBarry Smith 144247c6ae99SBarry Smith Output Parameter: 144347c6ae99SBarry Smith . coloring - the coloring 144447c6ae99SBarry Smith 14451bf8429eSBarry Smith Level: developer 14461bf8429eSBarry Smith 1447ec5066bdSBarry Smith Notes: 1448bb7acecfSBarry Smith Coloring of matrices can also be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 1449bb7acecfSBarry Smith matrix comes from (what this function provides). In general using the mesh produces a more optimal coloring (fewer colors). 1450ec5066bdSBarry Smith 1451bb7acecfSBarry Smith This produces a coloring with the distance of 2, see `MatSetColoringDistance()` which can be used for efficiently computing Jacobians with `MatFDColoringCreate()` 14521bf8429eSBarry Smith For `DMDA` in three dimensions with periodic boundary conditions the number of grid points in each dimension must be divisible by 2*stencil_width + 1, 14531bf8429eSBarry Smith otherwise an error will be generated. 1454ec5066bdSBarry Smith 14551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISColoring`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatType()`, `MatColoring`, `MatFDColoringCreate()` 1456aab9d709SJed Brown @*/ 1457d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateColoring(DM dm, ISColoringType ctype, ISColoring *coloring) 1458d71ae5a4SJacob Faibussowitsch { 145947c6ae99SBarry Smith PetscFunctionBegin; 1460171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14614f572ea9SToby Isaac PetscAssertPointer(coloring, 3); 1462dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getcoloring, ctype, coloring); 14633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 146447c6ae99SBarry Smith } 146547c6ae99SBarry Smith 1466b412c318SBarry Smith /*@ 1467bb7acecfSBarry Smith DMCreateMatrix - Gets an empty matrix for a `DM` that is most commonly used to store the Jacobian of a discrete PDE operator. 146847c6ae99SBarry Smith 146920f4b53cSBarry Smith Collective 147047c6ae99SBarry Smith 147147c6ae99SBarry Smith Input Parameter: 1472bb7acecfSBarry Smith . dm - the `DM` object 147347c6ae99SBarry Smith 147447c6ae99SBarry Smith Output Parameter: 147547c6ae99SBarry Smith . mat - the empty Jacobian 147647c6ae99SBarry Smith 147720f4b53cSBarry Smith Options Database Key: 1478bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 1479f27dd7c6SMatthew G. Knepley 148020f4b53cSBarry Smith Level: beginner 148120f4b53cSBarry Smith 148295452b02SPatrick Sanan Notes: 148395452b02SPatrick Sanan This properly preallocates the number of nonzeros in the sparse matrix so you 148494013140SBarry Smith do not need to do it yourself. 148594013140SBarry Smith 148694013140SBarry Smith By default it also sets the nonzero structure and puts in the zero entries. To prevent setting 1487bb7acecfSBarry Smith the nonzero pattern call `DMSetMatrixPreallocateOnly()` 148894013140SBarry Smith 1489bb7acecfSBarry Smith For `DMDA`, when you call `MatView()` on this matrix it is displayed using the global natural ordering, NOT in the ordering used 149094013140SBarry Smith internally by PETSc. 149194013140SBarry Smith 1492bb7acecfSBarry Smith For `DMDA`, in general it is easiest to use `MatSetValuesStencil()` or `MatSetValuesLocal()` to put values into the matrix because 1493bb7acecfSBarry Smith `MatSetValues()` requires the indices for the global numbering for the `DMDA` which is complic`ated to compute 149494013140SBarry Smith 14951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMSetMatType()`, `DMCreateMassMatrix()` 1496aab9d709SJed Brown @*/ 1497d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMatrix(DM dm, Mat *mat) 1498d71ae5a4SJacob Faibussowitsch { 149947c6ae99SBarry Smith PetscFunctionBegin; 1500171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 15014f572ea9SToby Isaac PetscAssertPointer(mat, 2); 15029566063dSJacob Faibussowitsch PetscCall(MatInitializePackage()); 15039566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateMatrix, 0, 0, 0, 0)); 1504dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, creatematrix, mat); 150576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1506c6b011d8SStefano Zampini DM mdm; 1507c6b011d8SStefano Zampini 15089566063dSJacob Faibussowitsch PetscCall(MatGetDM(*mat, &mdm)); 15097a8be351SBarry Smith PetscCheck(mdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the matrix", ((PetscObject)dm)->type_name); 1510c6b011d8SStefano Zampini } 1511e571a35bSMatthew G. Knepley /* Handle nullspace and near nullspace */ 1512e5e52638SMatthew G. Knepley if (dm->Nf) { 1513e571a35bSMatthew G. Knepley MatNullSpace nullSpace; 1514649ef022SMatthew Knepley PetscInt Nf, f; 1515e571a35bSMatthew G. Knepley 15169566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 1517649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1518649ef022SMatthew Knepley if (dm->nullspaceConstructors[f]) { 15199566063dSJacob Faibussowitsch PetscCall((*dm->nullspaceConstructors[f])(dm, f, f, &nullSpace)); 15209566063dSJacob Faibussowitsch PetscCall(MatSetNullSpace(*mat, nullSpace)); 15219566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1522649ef022SMatthew Knepley break; 1523e571a35bSMatthew G. Knepley } 1524649ef022SMatthew Knepley } 1525649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1526649ef022SMatthew Knepley if (dm->nearnullspaceConstructors[f]) { 15279566063dSJacob Faibussowitsch PetscCall((*dm->nearnullspaceConstructors[f])(dm, f, f, &nullSpace)); 15289566063dSJacob Faibussowitsch PetscCall(MatSetNearNullSpace(*mat, nullSpace)); 15299566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1530e571a35bSMatthew G. Knepley } 1531e571a35bSMatthew G. Knepley } 1532e571a35bSMatthew G. Knepley } 15339566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateMatrix, 0, 0, 0, 0)); 15343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 153547c6ae99SBarry Smith } 153647c6ae99SBarry Smith 1537732e2eb9SMatthew G Knepley /*@ 1538a4e35b19SJacob Faibussowitsch DMSetMatrixPreallocateSkip - When `DMCreateMatrix()` is called the matrix sizes and 1539a4e35b19SJacob Faibussowitsch `ISLocalToGlobalMapping` will be properly set, but the data structures to store values in the 1540a4e35b19SJacob Faibussowitsch matrices will not be preallocated. 1541aa0f6e3cSJed Brown 154220f4b53cSBarry Smith Logically Collective 1543aa0f6e3cSJed Brown 1544aa0f6e3cSJed Brown Input Parameters: 1545bb7acecfSBarry Smith + dm - the `DM` 1546bb7acecfSBarry Smith - skip - `PETSC_TRUE` to skip preallocation 1547aa0f6e3cSJed Brown 1548aa0f6e3cSJed Brown Level: developer 1549aa0f6e3cSJed Brown 155073ff1848SBarry Smith Note: 1551a4e35b19SJacob Faibussowitsch This is most useful to reduce initialization costs when `MatSetPreallocationCOO()` and 1552a4e35b19SJacob Faibussowitsch `MatSetValuesCOO()` will be used. 1553a4e35b19SJacob Faibussowitsch 15541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateOnly()` 1555aa0f6e3cSJed Brown @*/ 1556d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateSkip(DM dm, PetscBool skip) 1557d71ae5a4SJacob Faibussowitsch { 1558aa0f6e3cSJed Brown PetscFunctionBegin; 1559aa0f6e3cSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1560aa0f6e3cSJed Brown dm->prealloc_skip = skip; 15613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1562aa0f6e3cSJed Brown } 1563aa0f6e3cSJed Brown 1564aa0f6e3cSJed Brown /*@ 1565bb7acecfSBarry Smith DMSetMatrixPreallocateOnly - When `DMCreateMatrix()` is called the matrix will be properly 1566732e2eb9SMatthew G Knepley preallocated but the nonzero structure and zero values will not be set. 1567732e2eb9SMatthew G Knepley 156820f4b53cSBarry Smith Logically Collective 1569732e2eb9SMatthew G Knepley 1570d8d19677SJose E. Roman Input Parameters: 1571bb7acecfSBarry Smith + dm - the `DM` 1572bb7acecfSBarry Smith - only - `PETSC_TRUE` if only want preallocation 1573732e2eb9SMatthew G Knepley 157420f4b53cSBarry Smith Options Database Key: 1575bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()`, `DMCreateMassMatrix()`, but do not fill it with zeros 1576f27dd7c6SMatthew G. Knepley 157720f4b53cSBarry Smith Level: developer 157820f4b53cSBarry Smith 15791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateSkip()` 1580732e2eb9SMatthew G Knepley @*/ 1581d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateOnly(DM dm, PetscBool only) 1582d71ae5a4SJacob Faibussowitsch { 1583732e2eb9SMatthew G Knepley PetscFunctionBegin; 1584732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1585732e2eb9SMatthew G Knepley dm->prealloc_only = only; 15863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1587732e2eb9SMatthew G Knepley } 1588732e2eb9SMatthew G Knepley 1589b06ff27eSHong Zhang /*@ 15900b4b7b1cSBarry Smith DMSetMatrixStructureOnly - When `DMCreateMatrix()` is called, the matrix nonzero structure will be created 1591bb7acecfSBarry Smith but the array for numerical values will not be allocated. 1592b06ff27eSHong Zhang 159320f4b53cSBarry Smith Logically Collective 1594b06ff27eSHong Zhang 1595d8d19677SJose E. Roman Input Parameters: 1596bb7acecfSBarry Smith + dm - the `DM` 15970b4b7b1cSBarry Smith - only - `PETSC_TRUE` if you only want matrix nonzero structure 1598b06ff27eSHong Zhang 1599b06ff27eSHong Zhang Level: developer 1600bb7acecfSBarry Smith 16011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMSetMatrixPreallocateSkip()` 1602b06ff27eSHong Zhang @*/ 1603d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixStructureOnly(DM dm, PetscBool only) 1604d71ae5a4SJacob Faibussowitsch { 1605b06ff27eSHong Zhang PetscFunctionBegin; 1606b06ff27eSHong Zhang PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1607b06ff27eSHong Zhang dm->structure_only = only; 16083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1609b06ff27eSHong Zhang } 1610b06ff27eSHong Zhang 1611863027abSJed Brown /*@ 1612863027abSJed Brown DMSetBlockingType - set the blocking granularity to be used for variable block size `DMCreateMatrix()` is called 1613863027abSJed Brown 161420f4b53cSBarry Smith Logically Collective 1615863027abSJed Brown 1616863027abSJed Brown Input Parameters: 1617863027abSJed Brown + dm - the `DM` 1618863027abSJed Brown - btype - block by topological point or field node 1619863027abSJed Brown 162020f4b53cSBarry Smith Options Database Key: 16210e762ea3SJed Brown . -dm_blocking_type [topological_point, field_node] - use topological point blocking or field node blocking 1622863027abSJed Brown 162320f4b53cSBarry Smith Level: advanced 162420f4b53cSBarry Smith 16251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()` 1626863027abSJed Brown @*/ 1627863027abSJed Brown PetscErrorCode DMSetBlockingType(DM dm, DMBlockingType btype) 1628863027abSJed Brown { 1629863027abSJed Brown PetscFunctionBegin; 1630863027abSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1631863027abSJed Brown dm->blocking_type = btype; 16323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1633863027abSJed Brown } 1634863027abSJed Brown 1635863027abSJed Brown /*@ 1636863027abSJed Brown DMGetBlockingType - get the blocking granularity to be used for variable block size `DMCreateMatrix()` is called 1637863027abSJed Brown 1638863027abSJed Brown Not Collective 1639863027abSJed Brown 16402fe279fdSBarry Smith Input Parameter: 1641863027abSJed Brown . dm - the `DM` 1642863027abSJed Brown 16432fe279fdSBarry Smith Output Parameter: 1644863027abSJed Brown . btype - block by topological point or field node 1645863027abSJed Brown 1646863027abSJed Brown Level: advanced 1647863027abSJed Brown 16481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()` 1649863027abSJed Brown @*/ 1650863027abSJed Brown PetscErrorCode DMGetBlockingType(DM dm, DMBlockingType *btype) 1651863027abSJed Brown { 1652863027abSJed Brown PetscFunctionBegin; 1653863027abSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16544f572ea9SToby Isaac PetscAssertPointer(btype, 2); 1655863027abSJed Brown *btype = dm->blocking_type; 16563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1657863027abSJed Brown } 1658863027abSJed Brown 1659a89ea682SMatthew G Knepley /*@C 1660bb7acecfSBarry Smith DMGetWorkArray - Gets a work array guaranteed to be at least the input size, restore with `DMRestoreWorkArray()` 1661a89ea682SMatthew G Knepley 1662a89ea682SMatthew G Knepley Not Collective 1663a89ea682SMatthew G Knepley 1664a89ea682SMatthew G Knepley Input Parameters: 1665bb7acecfSBarry Smith + dm - the `DM` object 1666a5b23f4aSJose E. Roman . count - The minimum size 166720f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, or `MPIU_INT`) 1668a89ea682SMatthew G Knepley 1669a89ea682SMatthew G Knepley Output Parameter: 167060225df5SJacob Faibussowitsch . mem - the work array 1671a89ea682SMatthew G Knepley 1672a89ea682SMatthew G Knepley Level: developer 1673a89ea682SMatthew G Knepley 167473ff1848SBarry Smith Notes: 1675da81f932SPierre Jolivet A `DM` may stash the array between instantiations so using this routine may be more efficient than calling `PetscMalloc()` 1676bb7acecfSBarry Smith 1677bb7acecfSBarry Smith The array may contain nonzero values 1678bb7acecfSBarry Smith 16791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMRestoreWorkArray()`, `PetscMalloc()` 1680a89ea682SMatthew G Knepley @*/ 1681d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1682d71ae5a4SJacob Faibussowitsch { 1683aa1993deSMatthew G Knepley DMWorkLink link; 168469291d52SBarry Smith PetscMPIInt dsize; 1685a89ea682SMatthew G Knepley 1686a89ea682SMatthew G Knepley PetscFunctionBegin; 1687a89ea682SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16884f572ea9SToby Isaac PetscAssertPointer(mem, 4); 1689442f3b32SStefano Zampini if (!count) { 1690442f3b32SStefano Zampini *(void **)mem = NULL; 1691442f3b32SStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 1692442f3b32SStefano Zampini } 1693aa1993deSMatthew G Knepley if (dm->workin) { 1694aa1993deSMatthew G Knepley link = dm->workin; 1695aa1993deSMatthew G Knepley dm->workin = dm->workin->next; 1696aa1993deSMatthew G Knepley } else { 16974dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&link)); 1698a89ea682SMatthew G Knepley } 1699b77fa653SStefano Zampini /* Avoid MPI_Type_size for most used datatypes 1700b77fa653SStefano Zampini Get size directly */ 1701b77fa653SStefano Zampini if (dtype == MPIU_INT) dsize = sizeof(PetscInt); 1702b77fa653SStefano Zampini else if (dtype == MPIU_REAL) dsize = sizeof(PetscReal); 1703b77fa653SStefano Zampini #if defined(PETSC_USE_64BIT_INDICES) 1704b77fa653SStefano Zampini else if (dtype == MPI_INT) dsize = sizeof(int); 1705b77fa653SStefano Zampini #endif 1706b77fa653SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1707b77fa653SStefano Zampini else if (dtype == MPIU_SCALAR) dsize = sizeof(PetscScalar); 1708b77fa653SStefano Zampini #endif 1709b77fa653SStefano Zampini else PetscCallMPI(MPI_Type_size(dtype, &dsize)); 1710b77fa653SStefano Zampini 17115056fcd2SBarry Smith if (((size_t)dsize * count) > link->bytes) { 17129566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 17139566063dSJacob Faibussowitsch PetscCall(PetscMalloc(dsize * count, &link->mem)); 1714854ce69bSBarry Smith link->bytes = dsize * count; 1715aa1993deSMatthew G Knepley } 1716aa1993deSMatthew G Knepley link->next = dm->workout; 1717aa1993deSMatthew G Knepley dm->workout = link; 1718aa1993deSMatthew G Knepley *(void **)mem = link->mem; 17193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1720a89ea682SMatthew G Knepley } 1721a89ea682SMatthew G Knepley 1722aa1993deSMatthew G Knepley /*@C 1723bb7acecfSBarry Smith DMRestoreWorkArray - Restores a work array obtained with `DMCreateWorkArray()` 1724aa1993deSMatthew G Knepley 1725aa1993deSMatthew G Knepley Not Collective 1726aa1993deSMatthew G Knepley 1727aa1993deSMatthew G Knepley Input Parameters: 1728bb7acecfSBarry Smith + dm - the `DM` object 1729a5b23f4aSJose E. Roman . count - The minimum size 173020f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, `MPIU_INT` 1731aa1993deSMatthew G Knepley 1732aa1993deSMatthew G Knepley Output Parameter: 173360225df5SJacob Faibussowitsch . mem - the work array 1734aa1993deSMatthew G Knepley 1735aa1993deSMatthew G Knepley Level: developer 1736aa1993deSMatthew G Knepley 173773ff1848SBarry Smith Developer Note: 1738bb7acecfSBarry Smith count and dtype are ignored, they are only needed for `DMGetWorkArray()` 1739147403d9SBarry Smith 17401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMGetWorkArray()` 1741aa1993deSMatthew G Knepley @*/ 1742d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestoreWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1743d71ae5a4SJacob Faibussowitsch { 1744aa1993deSMatthew G Knepley DMWorkLink *p, link; 1745aa1993deSMatthew G Knepley 1746aa1993deSMatthew G Knepley PetscFunctionBegin; 1747aa1993deSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17484f572ea9SToby Isaac PetscAssertPointer(mem, 4); 1749a4e35b19SJacob Faibussowitsch (void)count; 1750a4e35b19SJacob Faibussowitsch (void)dtype; 1751442f3b32SStefano Zampini if (!*(void **)mem) PetscFunctionReturn(PETSC_SUCCESS); 1752aa1993deSMatthew G Knepley for (p = &dm->workout; (link = *p); p = &link->next) { 1753aa1993deSMatthew G Knepley if (link->mem == *(void **)mem) { 1754aa1993deSMatthew G Knepley *p = link->next; 1755aa1993deSMatthew G Knepley link->next = dm->workin; 1756aa1993deSMatthew G Knepley dm->workin = link; 17570298fd71SBarry Smith *(void **)mem = NULL; 17583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1759aa1993deSMatthew G Knepley } 1760aa1993deSMatthew G Knepley } 1761aa1993deSMatthew G Knepley SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Array was not checked out"); 1762aa1993deSMatthew G Knepley } 1763e7c4fc90SDmitry Karpeev 17648cda7954SMatthew G. Knepley /*@C 1765bb7acecfSBarry Smith DMSetNullSpaceConstructor - Provide a callback function which constructs the nullspace for a given field, defined with `DMAddField()`, when function spaces 1766bb7acecfSBarry Smith are joined or split, such as in `DMCreateSubDM()` 17678cda7954SMatthew G. Knepley 176820f4b53cSBarry Smith Logically Collective; No Fortran Support 17698cda7954SMatthew G. Knepley 17708cda7954SMatthew G. Knepley Input Parameters: 1771bb7acecfSBarry Smith + dm - The `DM` 17728cda7954SMatthew G. Knepley . field - The field number for the nullspace 17738cda7954SMatthew G. Knepley - nullsp - A callback to create the nullspace 17748cda7954SMatthew G. Knepley 177520f4b53cSBarry Smith Calling sequence of `nullsp`: 1776bb7acecfSBarry Smith + dm - The present `DM` 1777bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1778147403d9SBarry Smith . field - The field number in dm 1779147403d9SBarry Smith - nullSpace - The nullspace for the given field 17808cda7954SMatthew G. Knepley 178149762cbcSSatish Balay Level: intermediate 178249762cbcSSatish Balay 17831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1784147403d9SBarry Smith @*/ 1785a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1786d71ae5a4SJacob Faibussowitsch { 1787435a35e8SMatthew G Knepley PetscFunctionBegin; 1788435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17897a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1790435a35e8SMatthew G Knepley dm->nullspaceConstructors[field] = nullsp; 17913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1792435a35e8SMatthew G Knepley } 1793435a35e8SMatthew G Knepley 17948cda7954SMatthew G. Knepley /*@C 1795bb7acecfSBarry Smith DMGetNullSpaceConstructor - Return the callback function which constructs the nullspace for a given field, defined with `DMAddField()` 17968cda7954SMatthew G. Knepley 179720f4b53cSBarry Smith Not Collective; No Fortran Support 17988cda7954SMatthew G. Knepley 17998cda7954SMatthew G. Knepley Input Parameters: 1800bb7acecfSBarry Smith + dm - The `DM` 18018cda7954SMatthew G. Knepley - field - The field number for the nullspace 18028cda7954SMatthew G. Knepley 18038cda7954SMatthew G. Knepley Output Parameter: 18048cda7954SMatthew G. Knepley . nullsp - A callback to create the nullspace 18058cda7954SMatthew G. Knepley 180620f4b53cSBarry Smith Calling sequence of `nullsp`: 1807147403d9SBarry Smith + dm - The present DM 1808147403d9SBarry Smith . origField - The field number given above, in the original DM 1809147403d9SBarry Smith . field - The field number in dm 1810147403d9SBarry Smith - nullSpace - The nullspace for the given field 18118cda7954SMatthew G. Knepley 181249762cbcSSatish Balay Level: intermediate 181349762cbcSSatish Balay 18141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1815147403d9SBarry Smith @*/ 1816a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1817d71ae5a4SJacob Faibussowitsch { 18180a50eb56SMatthew G. Knepley PetscFunctionBegin; 18190a50eb56SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18204f572ea9SToby Isaac PetscAssertPointer(nullsp, 3); 18217a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 18220a50eb56SMatthew G. Knepley *nullsp = dm->nullspaceConstructors[field]; 18233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18240a50eb56SMatthew G. Knepley } 18250a50eb56SMatthew G. Knepley 18268cda7954SMatthew G. Knepley /*@C 1827bb7acecfSBarry Smith DMSetNearNullSpaceConstructor - Provide a callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 18288cda7954SMatthew G. Knepley 182920f4b53cSBarry Smith Logically Collective; No Fortran Support 18308cda7954SMatthew G. Knepley 18318cda7954SMatthew G. Knepley Input Parameters: 1832bb7acecfSBarry Smith + dm - The `DM` 18338cda7954SMatthew G. Knepley . field - The field number for the nullspace 18348cda7954SMatthew G. Knepley - nullsp - A callback to create the near-nullspace 18358cda7954SMatthew G. Knepley 183620f4b53cSBarry Smith Calling sequence of `nullsp`: 1837bb7acecfSBarry Smith + dm - The present `DM` 1838bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1839147403d9SBarry Smith . field - The field number in dm 1840147403d9SBarry Smith - nullSpace - The nullspace for the given field 18418cda7954SMatthew G. Knepley 184249762cbcSSatish Balay Level: intermediate 184349762cbcSSatish Balay 18441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`, 1845bb7acecfSBarry Smith `MatNullSpace` 1846147403d9SBarry Smith @*/ 1847a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1848d71ae5a4SJacob Faibussowitsch { 1849f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1850f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18517a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1852f9d4088aSMatthew G. Knepley dm->nearnullspaceConstructors[field] = nullsp; 18533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1854f9d4088aSMatthew G. Knepley } 1855f9d4088aSMatthew G. Knepley 18568cda7954SMatthew G. Knepley /*@C 1857bb7acecfSBarry Smith DMGetNearNullSpaceConstructor - Return the callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 18588cda7954SMatthew G. Knepley 185920f4b53cSBarry Smith Not Collective; No Fortran Support 18608cda7954SMatthew G. Knepley 18618cda7954SMatthew G. Knepley Input Parameters: 1862bb7acecfSBarry Smith + dm - The `DM` 18638cda7954SMatthew G. Knepley - field - The field number for the nullspace 18648cda7954SMatthew G. Knepley 18658cda7954SMatthew G. Knepley Output Parameter: 18668cda7954SMatthew G. Knepley . nullsp - A callback to create the near-nullspace 18678cda7954SMatthew G. Knepley 186820f4b53cSBarry Smith Calling sequence of `nullsp`: 1869bb7acecfSBarry Smith + dm - The present `DM` 1870bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1871147403d9SBarry Smith . field - The field number in dm 1872147403d9SBarry Smith - nullSpace - The nullspace for the given field 18738cda7954SMatthew G. Knepley 187449762cbcSSatish Balay Level: intermediate 187549762cbcSSatish Balay 18761cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, 1877bb7acecfSBarry Smith `MatNullSpace`, `DMCreateSuperDM()` 1878147403d9SBarry Smith @*/ 1879a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1880d71ae5a4SJacob Faibussowitsch { 1881f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1882f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18834f572ea9SToby Isaac PetscAssertPointer(nullsp, 3); 18847a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1885f9d4088aSMatthew G. Knepley *nullsp = dm->nearnullspaceConstructors[field]; 18863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1887f9d4088aSMatthew G. Knepley } 1888f9d4088aSMatthew G. Knepley 18894f3b5142SJed Brown /*@C 1890bb7acecfSBarry Smith DMCreateFieldIS - Creates a set of `IS` objects with the global indices of dofs for each field defined with `DMAddField()` 18914d343eeaSMatthew G Knepley 189220f4b53cSBarry Smith Not Collective; No Fortran Support 18934d343eeaSMatthew G Knepley 18944d343eeaSMatthew G Knepley Input Parameter: 1895bb7acecfSBarry Smith . dm - the `DM` object 18964d343eeaSMatthew G Knepley 18974d343eeaSMatthew G Knepley Output Parameters: 189820f4b53cSBarry Smith + numFields - The number of fields (or `NULL` if not requested) 189920f4b53cSBarry Smith . fieldNames - The number of each field (or `NULL` if not requested) 190020f4b53cSBarry Smith - fields - The global indices for each field (or `NULL` if not requested) 19014d343eeaSMatthew G Knepley 19024d343eeaSMatthew G Knepley Level: intermediate 19034d343eeaSMatthew G Knepley 1904bb7acecfSBarry Smith Note: 190573ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `fieldNames` should be freed with 190673ff1848SBarry Smith `PetscFree()`, every entry of `fields` should be destroyed with `ISDestroy()`, and both arrays should be freed with 1907bb7acecfSBarry Smith `PetscFree()`. 190821c9b008SJed Brown 190973ff1848SBarry Smith Developer Note: 1910bb7acecfSBarry Smith It is not clear why both this function and `DMCreateFieldDecomposition()` exist. Having two seems redundant and confusing. This function should 1911bb7acecfSBarry Smith likely be removed. 1912bb7acecfSBarry Smith 19131cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1914bb7acecfSBarry Smith `DMCreateFieldDecomposition()` 19154d343eeaSMatthew G Knepley @*/ 1916d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldIS(DM dm, PetscInt *numFields, char ***fieldNames, IS **fields) 1917d71ae5a4SJacob Faibussowitsch { 191837d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 19194d343eeaSMatthew G Knepley 19204d343eeaSMatthew G Knepley PetscFunctionBegin; 19214d343eeaSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 192269ca1f37SDmitry Karpeev if (numFields) { 19234f572ea9SToby Isaac PetscAssertPointer(numFields, 2); 192469ca1f37SDmitry Karpeev *numFields = 0; 192569ca1f37SDmitry Karpeev } 192637d0c07bSMatthew G Knepley if (fieldNames) { 19274f572ea9SToby Isaac PetscAssertPointer(fieldNames, 3); 19280298fd71SBarry Smith *fieldNames = NULL; 192969ca1f37SDmitry Karpeev } 193069ca1f37SDmitry Karpeev if (fields) { 19314f572ea9SToby Isaac PetscAssertPointer(fields, 4); 19320298fd71SBarry Smith *fields = NULL; 193369ca1f37SDmitry Karpeev } 19349566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 193537d0c07bSMatthew G Knepley if (section) { 19363a544194SStefano Zampini PetscInt *fieldSizes, *fieldNc, **fieldIndices; 193737d0c07bSMatthew G Knepley PetscInt nF, f, pStart, pEnd, p; 193837d0c07bSMatthew G Knepley 19399566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 19409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &nF)); 19419566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nF, &fieldSizes, nF, &fieldNc, nF, &fieldIndices)); 19429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd)); 194337d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 194437d0c07bSMatthew G Knepley fieldSizes[f] = 0; 19459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &fieldNc[f])); 194637d0c07bSMatthew G Knepley } 194737d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 194837d0c07bSMatthew G Knepley PetscInt gdof; 194937d0c07bSMatthew G Knepley 19509566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 195137d0c07bSMatthew G Knepley if (gdof > 0) { 195237d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19533a544194SStefano Zampini PetscInt fdof, fcdof, fpdof; 195437d0c07bSMatthew G Knepley 19559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 19573a544194SStefano Zampini fpdof = fdof - fcdof; 19583a544194SStefano Zampini if (fpdof && fpdof != fieldNc[f]) { 19593a544194SStefano Zampini /* Layout does not admit a pointwise block size */ 19603a544194SStefano Zampini fieldNc[f] = 1; 19613a544194SStefano Zampini } 19623a544194SStefano Zampini fieldSizes[f] += fpdof; 196337d0c07bSMatthew G Knepley } 196437d0c07bSMatthew G Knepley } 196537d0c07bSMatthew G Knepley } 196637d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(fieldSizes[f], &fieldIndices[f])); 196837d0c07bSMatthew G Knepley fieldSizes[f] = 0; 196937d0c07bSMatthew G Knepley } 197037d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 197137d0c07bSMatthew G Knepley PetscInt gdof, goff; 197237d0c07bSMatthew G Knepley 19739566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 197437d0c07bSMatthew G Knepley if (gdof > 0) { 19759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &goff)); 197637d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 197737d0c07bSMatthew G Knepley PetscInt fdof, fcdof, fc; 197837d0c07bSMatthew G Knepley 19799566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19809566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 1981ad540459SPierre Jolivet for (fc = 0; fc < fdof - fcdof; ++fc, ++fieldSizes[f]) fieldIndices[f][fieldSizes[f]] = goff++; 198237d0c07bSMatthew G Knepley } 198337d0c07bSMatthew G Knepley } 198437d0c07bSMatthew G Knepley } 19858865f1eaSKarl Rupp if (numFields) *numFields = nF; 198637d0c07bSMatthew G Knepley if (fieldNames) { 19879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fieldNames)); 198837d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 198937d0c07bSMatthew G Knepley const char *fieldName; 199037d0c07bSMatthew G Knepley 19919566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 1992835f2295SStefano Zampini PetscCall(PetscStrallocpy(fieldName, &(*fieldNames)[f])); 199337d0c07bSMatthew G Knepley } 199437d0c07bSMatthew G Knepley } 199537d0c07bSMatthew G Knepley if (fields) { 19969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fields)); 199737d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19983a544194SStefano Zampini PetscInt bs, in[2], out[2]; 19993a544194SStefano Zampini 20009566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), fieldSizes[f], fieldIndices[f], PETSC_OWN_POINTER, &(*fields)[f])); 20013a544194SStefano Zampini in[0] = -fieldNc[f]; 20023a544194SStefano Zampini in[1] = fieldNc[f]; 2003462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 20043a544194SStefano Zampini bs = (-out[0] == out[1]) ? out[1] : 1; 20059566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize((*fields)[f], bs)); 200637d0c07bSMatthew G Knepley } 200737d0c07bSMatthew G Knepley } 20089566063dSJacob Faibussowitsch PetscCall(PetscFree3(fieldSizes, fieldNc, fieldIndices)); 2009dbbe0bcdSBarry Smith } else PetscTryTypeMethod(dm, createfieldis, numFields, fieldNames, fields); 20103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20114d343eeaSMatthew G Knepley } 20124d343eeaSMatthew G Knepley 201316621825SDmitry Karpeev /*@C 2014bb7acecfSBarry Smith DMCreateFieldDecomposition - Returns a list of `IS` objects defining a decomposition of a problem into subproblems 2015a4e35b19SJacob Faibussowitsch corresponding to different fields. 2016e7c4fc90SDmitry Karpeev 201720f4b53cSBarry Smith Not Collective; No Fortran Support 2018e7c4fc90SDmitry Karpeev 2019e7c4fc90SDmitry Karpeev Input Parameter: 2020bb7acecfSBarry Smith . dm - the `DM` object 2021e7c4fc90SDmitry Karpeev 2022e7c4fc90SDmitry Karpeev Output Parameters: 202320f4b53cSBarry Smith + len - The number of fields (or `NULL` if not requested) 202420f4b53cSBarry Smith . namelist - The name for each field (or `NULL` if not requested) 202520f4b53cSBarry Smith . islist - The global indices for each field (or `NULL` if not requested) 202620f4b53cSBarry Smith - dmlist - The `DM`s for each field subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined) 2027e7c4fc90SDmitry Karpeev 2028e7c4fc90SDmitry Karpeev Level: intermediate 2029e7c4fc90SDmitry Karpeev 2030a4e35b19SJacob Faibussowitsch Notes: 2031a4e35b19SJacob Faibussowitsch Each `IS` contains the global indices of the dofs of the corresponding field, defined by 2032a4e35b19SJacob Faibussowitsch `DMAddField()`. The optional list of `DM`s define the `DM` for each subproblem. 2033a4e35b19SJacob Faibussowitsch 2034a4e35b19SJacob Faibussowitsch The same as `DMCreateFieldIS()` but also returns a `DM` for each field. 2035a4e35b19SJacob Faibussowitsch 203673ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with 203773ff1848SBarry Smith `PetscFree()`, every entry of `islist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`, 2038bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 2039e7c4fc90SDmitry Karpeev 204060225df5SJacob Faibussowitsch Developer Notes: 2041bb7acecfSBarry Smith It is not clear why this function and `DMCreateFieldIS()` exist. Having two seems redundant and confusing. 2042bb7acecfSBarry Smith 204373ff1848SBarry Smith Unlike `DMRefine()`, `DMCoarsen()`, and `DMCreateDomainDecomposition()` this provides no mechanism to provide hooks that are called after the 204473ff1848SBarry Smith decomposition is computed. 204573ff1848SBarry Smith 204673ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMCreateFieldIS()`, `DMCreateSubDM()`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()` 2047e7c4fc90SDmitry Karpeev @*/ 2048d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldDecomposition(DM dm, PetscInt *len, char ***namelist, IS **islist, DM **dmlist) 2049d71ae5a4SJacob Faibussowitsch { 2050e7c4fc90SDmitry Karpeev PetscFunctionBegin; 2051e7c4fc90SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 20528865f1eaSKarl Rupp if (len) { 20534f572ea9SToby Isaac PetscAssertPointer(len, 2); 20548865f1eaSKarl Rupp *len = 0; 20558865f1eaSKarl Rupp } 20568865f1eaSKarl Rupp if (namelist) { 20574f572ea9SToby Isaac PetscAssertPointer(namelist, 3); 2058ea78f98cSLisandro Dalcin *namelist = NULL; 20598865f1eaSKarl Rupp } 20608865f1eaSKarl Rupp if (islist) { 20614f572ea9SToby Isaac PetscAssertPointer(islist, 4); 2062ea78f98cSLisandro Dalcin *islist = NULL; 20638865f1eaSKarl Rupp } 20648865f1eaSKarl Rupp if (dmlist) { 20654f572ea9SToby Isaac PetscAssertPointer(dmlist, 5); 2066ea78f98cSLisandro Dalcin *dmlist = NULL; 20678865f1eaSKarl Rupp } 2068f3f0edfdSDmitry Karpeev /* 2069f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2070f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2071f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2072f3f0edfdSDmitry Karpeev */ 20737a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 207416621825SDmitry Karpeev if (!dm->ops->createfielddecomposition) { 2075435a35e8SMatthew G Knepley PetscSection section; 2076435a35e8SMatthew G Knepley PetscInt numFields, f; 2077435a35e8SMatthew G Knepley 20789566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 20799566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(section, &numFields)); 2080435a35e8SMatthew G Knepley if (section && numFields && dm->ops->createsubdm) { 2081f25d98f1SMatthew G. Knepley if (len) *len = numFields; 20829566063dSJacob Faibussowitsch if (namelist) PetscCall(PetscMalloc1(numFields, namelist)); 20839566063dSJacob Faibussowitsch if (islist) PetscCall(PetscMalloc1(numFields, islist)); 20849566063dSJacob Faibussowitsch if (dmlist) PetscCall(PetscMalloc1(numFields, dmlist)); 2085435a35e8SMatthew G Knepley for (f = 0; f < numFields; ++f) { 2086435a35e8SMatthew G Knepley const char *fieldName; 2087435a35e8SMatthew G Knepley 20889566063dSJacob Faibussowitsch PetscCall(DMCreateSubDM(dm, 1, &f, islist ? &(*islist)[f] : NULL, dmlist ? &(*dmlist)[f] : NULL)); 208903dc3394SMatthew G. Knepley if (namelist) { 20909566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 2091835f2295SStefano Zampini PetscCall(PetscStrallocpy(fieldName, &(*namelist)[f])); 2092435a35e8SMatthew G Knepley } 209303dc3394SMatthew G. Knepley } 2094435a35e8SMatthew G Knepley } else { 20959566063dSJacob Faibussowitsch PetscCall(DMCreateFieldIS(dm, len, namelist, islist)); 2096e7c4fc90SDmitry Karpeev /* By default there are no DMs associated with subproblems. */ 20970298fd71SBarry Smith if (dmlist) *dmlist = NULL; 2098e7c4fc90SDmitry Karpeev } 2099dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, createfielddecomposition, len, namelist, islist, dmlist); 21003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 210116621825SDmitry Karpeev } 210216621825SDmitry Karpeev 21035d83a8b1SBarry Smith /*@ 210420f4b53cSBarry Smith DMCreateSubDM - Returns an `IS` and `DM` encapsulating a subproblem defined by the fields passed in. 210520f4b53cSBarry Smith The fields are defined by `DMCreateFieldIS()`. 2106435a35e8SMatthew G Knepley 2107435a35e8SMatthew G Knepley Not collective 2108435a35e8SMatthew G Knepley 2109435a35e8SMatthew G Knepley Input Parameters: 2110bb7acecfSBarry Smith + dm - The `DM` object 2111bb7acecfSBarry Smith . numFields - The number of fields to select 21122adcc780SMatthew G. Knepley - fields - The field numbers of the selected fields 2113435a35e8SMatthew G Knepley 2114435a35e8SMatthew G Knepley Output Parameters: 2115b6971eaeSBarry Smith + is - The global indices for all the degrees of freedom in the new sub `DM`, use `NULL` if not needed 2116b6971eaeSBarry Smith - subdm - The `DM` for the subproblem, use `NULL` if not needed 2117435a35e8SMatthew G Knepley 211820f4b53cSBarry Smith Level: intermediate 211920f4b53cSBarry Smith 2120bb7acecfSBarry Smith Note: 2121bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 21225d3b26e6SMatthew G. Knepley 212360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateFieldIS()`, `DMCreateFieldDecomposition()`, `DMAddField()`, `DMCreateSuperDM()`, `IS`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 2124435a35e8SMatthew G Knepley @*/ 2125d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSubDM(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm) 2126d71ae5a4SJacob Faibussowitsch { 2127435a35e8SMatthew G Knepley PetscFunctionBegin; 2128435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 21294f572ea9SToby Isaac PetscAssertPointer(fields, 3); 21304f572ea9SToby Isaac if (is) PetscAssertPointer(is, 4); 21314f572ea9SToby Isaac if (subdm) PetscAssertPointer(subdm, 5); 2132dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createsubdm, numFields, fields, is, subdm); 21333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2134435a35e8SMatthew G Knepley } 2135435a35e8SMatthew G Knepley 21362adcc780SMatthew G. Knepley /*@C 2137bb7acecfSBarry Smith DMCreateSuperDM - Returns an arrays of `IS` and `DM` encapsulating a superproblem defined by multiple `DM`s passed in. 21382adcc780SMatthew G. Knepley 21392adcc780SMatthew G. Knepley Not collective 21402adcc780SMatthew G. Knepley 2141d8d19677SJose E. Roman Input Parameters: 2142bb7acecfSBarry Smith + dms - The `DM` objects 2143bb7acecfSBarry Smith - n - The number of `DM`s 21442adcc780SMatthew G. Knepley 21452adcc780SMatthew G. Knepley Output Parameters: 2146bb7acecfSBarry Smith + is - The global indices for each of subproblem within the super `DM`, or NULL 2147bb7acecfSBarry Smith - superdm - The `DM` for the superproblem 21482adcc780SMatthew G. Knepley 214920f4b53cSBarry Smith Level: intermediate 215020f4b53cSBarry Smith 2151bb7acecfSBarry Smith Note: 2152bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 21535d3b26e6SMatthew G. Knepley 215473ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateSubDM()`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`, `DMCreateDomainDecomposition()` 21552adcc780SMatthew G. Knepley @*/ 21565d83a8b1SBarry Smith PetscErrorCode DMCreateSuperDM(DM dms[], PetscInt n, IS *is[], DM *superdm) 2157d71ae5a4SJacob Faibussowitsch { 21582adcc780SMatthew G. Knepley PetscInt i; 21592adcc780SMatthew G. Knepley 21602adcc780SMatthew G. Knepley PetscFunctionBegin; 21614f572ea9SToby Isaac PetscAssertPointer(dms, 1); 2162ad540459SPierre Jolivet for (i = 0; i < n; ++i) PetscValidHeaderSpecific(dms[i], DM_CLASSID, 1); 21634f572ea9SToby Isaac if (is) PetscAssertPointer(is, 3); 21644f572ea9SToby Isaac PetscAssertPointer(superdm, 4); 2165bb7acecfSBarry Smith PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of DMs must be nonnegative: %" PetscInt_FMT, n); 2166bb7acecfSBarry Smith if (n) { 2167b9d85ea2SLisandro Dalcin DM dm = dms[0]; 216800045ab3SPierre Jolivet PetscCheck(dm->ops->createsuperdm, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No method createsuperdm for DM of type %s", ((PetscObject)dm)->type_name); 2169dbbe0bcdSBarry Smith PetscCall((*dm->ops->createsuperdm)(dms, n, is, superdm)); 21702adcc780SMatthew G. Knepley } 21713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21722adcc780SMatthew G. Knepley } 21732adcc780SMatthew G. Knepley 217416621825SDmitry Karpeev /*@C 2175a4e35b19SJacob Faibussowitsch DMCreateDomainDecomposition - Returns lists of `IS` objects defining a decomposition of a 2176a4e35b19SJacob Faibussowitsch problem into subproblems corresponding to restrictions to pairs of nested subdomains. 217716621825SDmitry Karpeev 217820f4b53cSBarry Smith Not Collective 217916621825SDmitry Karpeev 218016621825SDmitry Karpeev Input Parameter: 2181bb7acecfSBarry Smith . dm - the `DM` object 218216621825SDmitry Karpeev 218316621825SDmitry Karpeev Output Parameters: 218420f4b53cSBarry Smith + n - The number of subproblems in the domain decomposition (or `NULL` if not requested) 218520f4b53cSBarry Smith . namelist - The name for each subdomain (or `NULL` if not requested) 218673ff1848SBarry Smith . innerislist - The global indices for each inner subdomain (or `NULL`, if not requested) 218773ff1848SBarry Smith . outerislist - The global indices for each outer subdomain (or `NULL`, if not requested) 218873ff1848SBarry Smith - dmlist - The `DM`s for each subdomain subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined) 218916621825SDmitry Karpeev 219016621825SDmitry Karpeev Level: intermediate 219116621825SDmitry Karpeev 219273ff1848SBarry Smith Notes: 2193a4e35b19SJacob Faibussowitsch Each `IS` contains the global indices of the dofs of the corresponding subdomains with in the 2194a4e35b19SJacob Faibussowitsch dofs of the original `DM`. The inner subdomains conceptually define a nonoverlapping 2195a4e35b19SJacob Faibussowitsch covering, while outer subdomains can overlap. 2196a4e35b19SJacob Faibussowitsch 2197a4e35b19SJacob Faibussowitsch The optional list of `DM`s define a `DM` for each subproblem. 2198a4e35b19SJacob Faibussowitsch 219973ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with 220073ff1848SBarry Smith `PetscFree()`, every entry of `innerislist` and `outerislist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`, 2201bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 220216621825SDmitry Karpeev 2203a4e35b19SJacob Faibussowitsch Developer Notes: 220420f4b53cSBarry Smith The `dmlist` is for the inner subdomains or the outer subdomains or all subdomains? 2205bb7acecfSBarry Smith 220673ff1848SBarry Smith The names are inconsistent, the hooks use `DMSubDomainHook` which is nothing like `DMCreateDomainDecomposition()` while `DMRefineHook` is used for `DMRefine()`. 220773ff1848SBarry Smith 220873ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateFieldDecomposition()`, `DMDestroy()`, `DMCreateDomainDecompositionScatters()`, `DMView()`, `DMCreateInterpolation()`, 220973ff1848SBarry Smith `DMSubDomainHookAdd()`, `DMSubDomainHookRemove()`,`DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()` 221016621825SDmitry Karpeev @*/ 2211d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecomposition(DM dm, PetscInt *n, char ***namelist, IS **innerislist, IS **outerislist, DM **dmlist) 2212d71ae5a4SJacob Faibussowitsch { 2213be081cd6SPeter Brune DMSubDomainHookLink link; 2214be081cd6SPeter Brune PetscInt i, l; 221516621825SDmitry Karpeev 221616621825SDmitry Karpeev PetscFunctionBegin; 221716621825SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 22189371c9d4SSatish Balay if (n) { 22194f572ea9SToby Isaac PetscAssertPointer(n, 2); 22209371c9d4SSatish Balay *n = 0; 22219371c9d4SSatish Balay } 22229371c9d4SSatish Balay if (namelist) { 22234f572ea9SToby Isaac PetscAssertPointer(namelist, 3); 22249371c9d4SSatish Balay *namelist = NULL; 22259371c9d4SSatish Balay } 22269371c9d4SSatish Balay if (innerislist) { 22274f572ea9SToby Isaac PetscAssertPointer(innerislist, 4); 22289371c9d4SSatish Balay *innerislist = NULL; 22299371c9d4SSatish Balay } 22309371c9d4SSatish Balay if (outerislist) { 22314f572ea9SToby Isaac PetscAssertPointer(outerislist, 5); 22329371c9d4SSatish Balay *outerislist = NULL; 22339371c9d4SSatish Balay } 22349371c9d4SSatish Balay if (dmlist) { 22354f572ea9SToby Isaac PetscAssertPointer(dmlist, 6); 22369371c9d4SSatish Balay *dmlist = NULL; 22379371c9d4SSatish Balay } 2238f3f0edfdSDmitry Karpeev /* 2239f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2240f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2241f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2242f3f0edfdSDmitry Karpeev */ 22437a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 224416621825SDmitry Karpeev if (dm->ops->createdomaindecomposition) { 2245dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createdomaindecomposition, &l, namelist, innerislist, outerislist, dmlist); 224614a18fd3SPeter Brune /* copy subdomain hooks and context over to the subdomain DMs */ 2247f891f5b9SPatrick Sanan if (dmlist && *dmlist) { 2248be081cd6SPeter Brune for (i = 0; i < l; i++) { 2249be081cd6SPeter Brune for (link = dm->subdomainhook; link; link = link->next) { 22509566063dSJacob Faibussowitsch if (link->ddhook) PetscCall((*link->ddhook)(dm, (*dmlist)[i], link->ctx)); 2251be081cd6SPeter Brune } 2252648262bbSPatrick Sanan if (dm->ctx) (*dmlist)[i]->ctx = dm->ctx; 2253e7c4fc90SDmitry Karpeev } 225414a18fd3SPeter Brune } 2255bb7acecfSBarry Smith if (n) *n = l; 225614a18fd3SPeter Brune } 22573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2258e30e807fSPeter Brune } 2259e30e807fSPeter Brune 2260e30e807fSPeter Brune /*@C 226173ff1848SBarry Smith DMCreateDomainDecompositionScatters - Returns scatters to the subdomain vectors from the global vector for subdomains created with 226273ff1848SBarry Smith `DMCreateDomainDecomposition()` 2263e30e807fSPeter Brune 226420f4b53cSBarry Smith Not Collective 2265e30e807fSPeter Brune 2266e30e807fSPeter Brune Input Parameters: 2267bb7acecfSBarry Smith + dm - the `DM` object 226873ff1848SBarry Smith . n - the number of subdomains 2269e30e807fSPeter Brune - subdms - the local subdomains 2270e30e807fSPeter Brune 2271e30e807fSPeter Brune Output Parameters: 22726b867d5aSJose E. Roman + iscat - scatter from global vector to nonoverlapping global vector entries on subdomain 2273e30e807fSPeter Brune . oscat - scatter from global vector to overlapping global vector entries on subdomain 2274e30e807fSPeter Brune - gscat - scatter from global vector to local vector on subdomain (fills in ghosts) 2275e30e807fSPeter Brune 227620f4b53cSBarry Smith Level: developer 227720f4b53cSBarry Smith 2278bb7acecfSBarry Smith Note: 2279bb7acecfSBarry Smith This is an alternative to the iis and ois arguments in `DMCreateDomainDecomposition()` that allow for the solution 2280e30e807fSPeter Brune of general nonlinear problems with overlapping subdomain methods. While merely having index sets that enable subsets 2281e30e807fSPeter Brune of the residual equations to be created is fine for linear problems, nonlinear problems require local assembly of 2282e30e807fSPeter Brune solution and residual data. 2283e30e807fSPeter Brune 228473ff1848SBarry Smith Developer Note: 2285a4e35b19SJacob Faibussowitsch Can the subdms input be anything or are they exactly the `DM` obtained from 2286a4e35b19SJacob Faibussowitsch `DMCreateDomainDecomposition()`? 2287bb7acecfSBarry Smith 22881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 2289e30e807fSPeter Brune @*/ 22905d83a8b1SBarry Smith PetscErrorCode DMCreateDomainDecompositionScatters(DM dm, PetscInt n, DM *subdms, VecScatter *iscat[], VecScatter *oscat[], VecScatter *gscat[]) 2291d71ae5a4SJacob Faibussowitsch { 2292e30e807fSPeter Brune PetscFunctionBegin; 2293e30e807fSPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 22944f572ea9SToby Isaac PetscAssertPointer(subdms, 3); 2295dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createddscatters, n, subdms, iscat, oscat, gscat); 22963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2297e7c4fc90SDmitry Karpeev } 2298e7c4fc90SDmitry Karpeev 229947c6ae99SBarry Smith /*@ 2300bb7acecfSBarry Smith DMRefine - Refines a `DM` object using a standard nonadaptive refinement of the underlying mesh 230147c6ae99SBarry Smith 230220f4b53cSBarry Smith Collective 230347c6ae99SBarry Smith 2304d8d19677SJose E. Roman Input Parameters: 2305bb7acecfSBarry Smith + dm - the `DM` object 2306bb7acecfSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`) 230747c6ae99SBarry Smith 230847c6ae99SBarry Smith Output Parameter: 230920f4b53cSBarry Smith . dmf - the refined `DM`, or `NULL` 2310ae0a1c52SMatthew G Knepley 231120f4b53cSBarry Smith Options Database Key: 2312412e9a14SMatthew G. Knepley . -dm_plex_cell_refiner <strategy> - chooses the refinement strategy, e.g. regular, tohex 2313412e9a14SMatthew G. Knepley 231447c6ae99SBarry Smith Level: developer 231547c6ae99SBarry Smith 231620f4b53cSBarry Smith Note: 231720f4b53cSBarry Smith If no refinement was done, the return value is `NULL` 231820f4b53cSBarry Smith 231973ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`, 232073ff1848SBarry Smith `DMRefineHookAdd()`, `DMRefineHookRemove()` 232147c6ae99SBarry Smith @*/ 2322d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefine(DM dm, MPI_Comm comm, DM *dmf) 2323d71ae5a4SJacob Faibussowitsch { 2324c833c3b5SJed Brown DMRefineHookLink link; 232547c6ae99SBarry Smith 232647c6ae99SBarry Smith PetscFunctionBegin; 2327732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 23289566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Refine, dm, 0, 0, 0)); 2329dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, refine, comm, dmf); 23304057135bSMatthew G Knepley if (*dmf) { 233143842a1eSJed Brown (*dmf)->ops->creatematrix = dm->ops->creatematrix; 23328865f1eaSKarl Rupp 23339566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmf)); 23348865f1eaSKarl Rupp 2335644e2e5bSBarry Smith (*dmf)->ctx = dm->ctx; 23360598a293SJed Brown (*dmf)->leveldown = dm->leveldown; 2337656b349aSBarry Smith (*dmf)->levelup = dm->levelup + 1; 23388865f1eaSKarl Rupp 23399566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmf, dm->mattype)); 2340c833c3b5SJed Brown for (link = dm->refinehook; link; link = link->next) { 23411baa6e33SBarry Smith if (link->refinehook) PetscCall((*link->refinehook)(dm, *dmf, link->ctx)); 2342c833c3b5SJed Brown } 2343c833c3b5SJed Brown } 23449566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Refine, dm, 0, 0, 0)); 23453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2346c833c3b5SJed Brown } 2347c833c3b5SJed Brown 2348bb9467b5SJed Brown /*@C 2349c833c3b5SJed Brown DMRefineHookAdd - adds a callback to be run when interpolating a nonlinear problem to a finer grid 2350c833c3b5SJed Brown 235120f4b53cSBarry Smith Logically Collective; No Fortran Support 2352c833c3b5SJed Brown 23534165533cSJose E. Roman Input Parameters: 2354bb7acecfSBarry Smith + coarse - `DM` on which to run a hook when interpolating to a finer level 2355bb7acecfSBarry Smith . refinehook - function to run when setting up the finer level 2356f826b5fcSPierre Jolivet . interphook - function to run to update data on finer levels (once per `SNESSolve()`) 235720f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2358c833c3b5SJed Brown 235920f4b53cSBarry Smith Calling sequence of `refinehook`: 2360bb7acecfSBarry Smith + coarse - coarse level `DM` 2361bb7acecfSBarry Smith . fine - fine level `DM` to interpolate problem to 2362c833c3b5SJed Brown - ctx - optional user-defined function context 2363c833c3b5SJed Brown 236420f4b53cSBarry Smith Calling sequence of `interphook`: 2365bb7acecfSBarry Smith + coarse - coarse level `DM` 2366c833c3b5SJed Brown . interp - matrix interpolating a coarse-level solution to the finer grid 2367bb7acecfSBarry Smith . fine - fine level `DM` to update 2368c833c3b5SJed Brown - ctx - optional user-defined function context 2369c833c3b5SJed Brown 2370c833c3b5SJed Brown Level: advanced 2371c833c3b5SJed Brown 2372c833c3b5SJed Brown Notes: 2373bb7acecfSBarry Smith This function is only needed if auxiliary data that is attached to the `DM`s via, for example, `PetscObjectCompose()`, needs to be 2374bb7acecfSBarry Smith passed to fine grids while grid sequencing. 2375bb7acecfSBarry Smith 2376bb7acecfSBarry Smith The actual interpolation is done when `DMInterpolate()` is called. 2377c833c3b5SJed Brown 2378c833c3b5SJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 2379c833c3b5SJed Brown 23801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2381c833c3b5SJed Brown @*/ 2382a4e35b19SJacob Faibussowitsch PetscErrorCode DMRefineHookAdd(DM coarse, PetscErrorCode (*refinehook)(DM coarse, DM fine, void *ctx), PetscErrorCode (*interphook)(DM coarse, Mat interp, DM fine, void *ctx), void *ctx) 2383d71ae5a4SJacob Faibussowitsch { 2384c833c3b5SJed Brown DMRefineHookLink link, *p; 2385c833c3b5SJed Brown 2386c833c3b5SJed Brown PetscFunctionBegin; 2387c833c3b5SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 23883d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 23893ba16761SJacob Faibussowitsch if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 23903d8e3701SJed Brown } 23919566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2392c833c3b5SJed Brown link->refinehook = refinehook; 2393c833c3b5SJed Brown link->interphook = interphook; 2394c833c3b5SJed Brown link->ctx = ctx; 23950298fd71SBarry Smith link->next = NULL; 2396c833c3b5SJed Brown *p = link; 23973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2398c833c3b5SJed Brown } 2399c833c3b5SJed Brown 24003d8e3701SJed Brown /*@C 2401bb7acecfSBarry Smith DMRefineHookRemove - remove a callback from the list of hooks, that have been set with `DMRefineHookAdd()`, to be run when interpolating 2402bb7acecfSBarry Smith a nonlinear problem to a finer grid 24033d8e3701SJed Brown 240420f4b53cSBarry Smith Logically Collective; No Fortran Support 24053d8e3701SJed Brown 24064165533cSJose E. Roman Input Parameters: 2407bb7acecfSBarry Smith + coarse - the `DM` on which to run a hook when restricting to a coarser level 2408bb7acecfSBarry Smith . refinehook - function to run when setting up a finer level 2409bb7acecfSBarry Smith . interphook - function to run to update data on finer levels 241020f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 24113d8e3701SJed Brown 24123d8e3701SJed Brown Level: advanced 24133d8e3701SJed Brown 2414bb7acecfSBarry Smith Note: 24153d8e3701SJed Brown This function does nothing if the hook is not in the list. 24163d8e3701SJed Brown 24171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `DMCoarsenHookRemove()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 24183d8e3701SJed Brown @*/ 2419d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookRemove(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx) 2420d71ae5a4SJacob Faibussowitsch { 24213d8e3701SJed Brown DMRefineHookLink link, *p; 24223d8e3701SJed Brown 24233d8e3701SJed Brown PetscFunctionBegin; 24243d8e3701SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 24253d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 24263d8e3701SJed Brown if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) { 24273d8e3701SJed Brown link = *p; 24283d8e3701SJed Brown *p = link->next; 24299566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 24303d8e3701SJed Brown break; 24313d8e3701SJed Brown } 24323d8e3701SJed Brown } 24333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24343d8e3701SJed Brown } 24353d8e3701SJed Brown 2436c833c3b5SJed Brown /*@ 2437bb7acecfSBarry Smith DMInterpolate - interpolates user-defined problem data attached to a `DM` to a finer `DM` by running hooks registered by `DMRefineHookAdd()` 2438c833c3b5SJed Brown 2439c833c3b5SJed Brown Collective if any hooks are 2440c833c3b5SJed Brown 24414165533cSJose E. Roman Input Parameters: 2442bb7acecfSBarry Smith + coarse - coarser `DM` to use as a base 2443bb7acecfSBarry Smith . interp - interpolation matrix, apply using `MatInterpolate()` 2444bb7acecfSBarry Smith - fine - finer `DM` to update 2445c833c3b5SJed Brown 2446c833c3b5SJed Brown Level: developer 2447c833c3b5SJed Brown 244873ff1848SBarry Smith Developer Note: 2449bb7acecfSBarry Smith This routine is called `DMInterpolate()` while the hook is called `DMRefineHookAdd()`. It would be better to have an 2450bb7acecfSBarry Smith an API with consistent terminology. 2451bb7acecfSBarry Smith 24521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `MatInterpolate()` 2453c833c3b5SJed Brown @*/ 2454d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolate(DM coarse, Mat interp, DM fine) 2455d71ae5a4SJacob Faibussowitsch { 2456c833c3b5SJed Brown DMRefineHookLink link; 2457c833c3b5SJed Brown 2458c833c3b5SJed Brown PetscFunctionBegin; 2459c833c3b5SJed Brown for (link = fine->refinehook; link; link = link->next) { 24601baa6e33SBarry Smith if (link->interphook) PetscCall((*link->interphook)(coarse, interp, fine, link->ctx)); 24614057135bSMatthew G Knepley } 24623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 246347c6ae99SBarry Smith } 246447c6ae99SBarry Smith 2465eb3f98d2SBarry Smith /*@ 24661f3379b2SToby Isaac DMInterpolateSolution - Interpolates a solution from a coarse mesh to a fine mesh. 24671f3379b2SToby Isaac 246820f4b53cSBarry Smith Collective 24691f3379b2SToby Isaac 24704165533cSJose E. Roman Input Parameters: 2471bb7acecfSBarry Smith + coarse - coarse `DM` 2472bb7acecfSBarry Smith . fine - fine `DM` 2473bb7acecfSBarry Smith . interp - (optional) the matrix computed by `DMCreateInterpolation()`. Implementations may not need this, but if it 2474bb7acecfSBarry Smith is available it can avoid some recomputation. If it is provided, `MatInterpolate()` will be used if 2475bb7acecfSBarry Smith the coarse `DM` does not have a specialized implementation. 24761f3379b2SToby Isaac - coarseSol - solution on the coarse mesh 24771f3379b2SToby Isaac 24784165533cSJose E. Roman Output Parameter: 24791f3379b2SToby Isaac . fineSol - the interpolation of coarseSol to the fine mesh 24801f3379b2SToby Isaac 24811f3379b2SToby Isaac Level: developer 24821f3379b2SToby Isaac 2483bb7acecfSBarry Smith Note: 2484bb7acecfSBarry Smith This function exists because the interpolation of a solution vector between meshes is not always a linear 24851f3379b2SToby Isaac map. For example, if a boundary value problem has an inhomogeneous Dirichlet boundary condition that is compressed 24861f3379b2SToby Isaac out of the solution vector. Or if interpolation is inherently a nonlinear operation, such as a method using 24871f3379b2SToby Isaac slope-limiting reconstruction. 24881f3379b2SToby Isaac 248973ff1848SBarry Smith Developer Note: 2490bb7acecfSBarry Smith This doesn't just interpolate "solutions" so its API name is questionable. 2491bb7acecfSBarry Smith 24921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMInterpolate()`, `DMCreateInterpolation()` 24931f3379b2SToby Isaac @*/ 2494d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolateSolution(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol) 2495d71ae5a4SJacob Faibussowitsch { 24961f3379b2SToby Isaac PetscErrorCode (*interpsol)(DM, DM, Mat, Vec, Vec) = NULL; 24971f3379b2SToby Isaac 24981f3379b2SToby Isaac PetscFunctionBegin; 24991f3379b2SToby Isaac PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 25001f3379b2SToby Isaac if (interp) PetscValidHeaderSpecific(interp, MAT_CLASSID, 3); 25011f3379b2SToby Isaac PetscValidHeaderSpecific(coarseSol, VEC_CLASSID, 4); 25021f3379b2SToby Isaac PetscValidHeaderSpecific(fineSol, VEC_CLASSID, 5); 25031f3379b2SToby Isaac 25049566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)coarse, "DMInterpolateSolution_C", &interpsol)); 25051f3379b2SToby Isaac if (interpsol) { 25069566063dSJacob Faibussowitsch PetscCall((*interpsol)(coarse, fine, interp, coarseSol, fineSol)); 25071f3379b2SToby Isaac } else if (interp) { 25089566063dSJacob Faibussowitsch PetscCall(MatInterpolate(interp, coarseSol, fineSol)); 250998921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)coarse), PETSC_ERR_SUP, "DM %s does not implement DMInterpolateSolution()", ((PetscObject)coarse)->type_name); 25103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25111f3379b2SToby Isaac } 25121f3379b2SToby Isaac 25131f3379b2SToby Isaac /*@ 2514bb7acecfSBarry Smith DMGetRefineLevel - Gets the number of refinements that have generated this `DM` from some initial `DM`. 2515eb3f98d2SBarry Smith 2516eb3f98d2SBarry Smith Not Collective 2517eb3f98d2SBarry Smith 2518eb3f98d2SBarry Smith Input Parameter: 2519bb7acecfSBarry Smith . dm - the `DM` object 2520eb3f98d2SBarry Smith 2521eb3f98d2SBarry Smith Output Parameter: 2522eb3f98d2SBarry Smith . level - number of refinements 2523eb3f98d2SBarry Smith 2524eb3f98d2SBarry Smith Level: developer 2525eb3f98d2SBarry Smith 2526bb7acecfSBarry Smith Note: 2527bb7acecfSBarry Smith This can be used, by example, to set the number of coarser levels associated with this `DM` for a multigrid solver. 2528bb7acecfSBarry Smith 25291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2530eb3f98d2SBarry Smith @*/ 2531d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRefineLevel(DM dm, PetscInt *level) 2532d71ae5a4SJacob Faibussowitsch { 2533eb3f98d2SBarry Smith PetscFunctionBegin; 2534eb3f98d2SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2535eb3f98d2SBarry Smith *level = dm->levelup; 25363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2537eb3f98d2SBarry Smith } 2538eb3f98d2SBarry Smith 2539fef3a512SBarry Smith /*@ 2540bb7acecfSBarry Smith DMSetRefineLevel - Sets the number of refinements that have generated this `DM`. 2541fef3a512SBarry Smith 2542fef3a512SBarry Smith Not Collective 2543fef3a512SBarry Smith 2544d8d19677SJose E. Roman Input Parameters: 2545bb7acecfSBarry Smith + dm - the `DM` object 2546fef3a512SBarry Smith - level - number of refinements 2547fef3a512SBarry Smith 2548fef3a512SBarry Smith Level: advanced 2549fef3a512SBarry Smith 255095452b02SPatrick Sanan Notes: 2551bb7acecfSBarry Smith This value is used by `PCMG` to determine how many multigrid levels to use 2552fef3a512SBarry Smith 2553bb7acecfSBarry Smith The values are usually set automatically by the process that is causing the refinements of an initial `DM` by calling this routine. 2554bb7acecfSBarry Smith 25551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRefineLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2556fef3a512SBarry Smith @*/ 2557d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRefineLevel(DM dm, PetscInt level) 2558d71ae5a4SJacob Faibussowitsch { 2559fef3a512SBarry Smith PetscFunctionBegin; 2560fef3a512SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2561fef3a512SBarry Smith dm->levelup = level; 25623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2563fef3a512SBarry Smith } 2564fef3a512SBarry Smith 2565d410b0cfSMatthew G. Knepley /*@ 2566bb7acecfSBarry Smith DMExtrude - Extrude a `DM` object from a surface 2567d410b0cfSMatthew G. Knepley 256820f4b53cSBarry Smith Collective 2569d410b0cfSMatthew G. Knepley 2570f1a722f8SMatthew G. Knepley Input Parameters: 2571bb7acecfSBarry Smith + dm - the `DM` object 2572d410b0cfSMatthew G. Knepley - layers - the number of extruded cell layers 2573d410b0cfSMatthew G. Knepley 2574d410b0cfSMatthew G. Knepley Output Parameter: 257520f4b53cSBarry Smith . dme - the extruded `DM`, or `NULL` 2576d410b0cfSMatthew G. Knepley 2577d410b0cfSMatthew G. Knepley Level: developer 2578d410b0cfSMatthew G. Knepley 257920f4b53cSBarry Smith Note: 258020f4b53cSBarry Smith If no extrusion was done, the return value is `NULL` 258120f4b53cSBarry Smith 25821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()` 2583d410b0cfSMatthew G. Knepley @*/ 2584d71ae5a4SJacob Faibussowitsch PetscErrorCode DMExtrude(DM dm, PetscInt layers, DM *dme) 2585d71ae5a4SJacob Faibussowitsch { 2586d410b0cfSMatthew G. Knepley PetscFunctionBegin; 2587d410b0cfSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2588dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, extrude, layers, dme); 2589d410b0cfSMatthew G. Knepley if (*dme) { 2590d410b0cfSMatthew G. Knepley (*dme)->ops->creatematrix = dm->ops->creatematrix; 25919566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dme)); 2592d410b0cfSMatthew G. Knepley (*dme)->ctx = dm->ctx; 25939566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dme, dm->mattype)); 2594d410b0cfSMatthew G. Knepley } 25953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2596d410b0cfSMatthew G. Knepley } 2597d410b0cfSMatthew G. Knepley 2598d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformDM_Internal(DM dm, DM *tdm) 2599d71ae5a4SJacob Faibussowitsch { 2600ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2601ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26024f572ea9SToby Isaac PetscAssertPointer(tdm, 2); 2603ca3d3a14SMatthew G. Knepley *tdm = dm->transformDM; 26043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2605ca3d3a14SMatthew G. Knepley } 2606ca3d3a14SMatthew G. Knepley 2607d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformVec_Internal(DM dm, Vec *tv) 2608d71ae5a4SJacob Faibussowitsch { 2609ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2610ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26114f572ea9SToby Isaac PetscAssertPointer(tv, 2); 2612ca3d3a14SMatthew G. Knepley *tv = dm->transform; 26133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2614ca3d3a14SMatthew G. Knepley } 2615ca3d3a14SMatthew G. Knepley 2616ca3d3a14SMatthew G. Knepley /*@ 2617bb7acecfSBarry Smith DMHasBasisTransform - Whether the `DM` employs a basis transformation from functions in global vectors to functions in local vectors 2618ca3d3a14SMatthew G. Knepley 2619ca3d3a14SMatthew G. Knepley Input Parameter: 262020f4b53cSBarry Smith . dm - The `DM` 2621ca3d3a14SMatthew G. Knepley 2622ca3d3a14SMatthew G. Knepley Output Parameter: 262320f4b53cSBarry Smith . flg - `PETSC_TRUE` if a basis transformation should be done 2624ca3d3a14SMatthew G. Knepley 2625ca3d3a14SMatthew G. Knepley Level: developer 2626ca3d3a14SMatthew G. Knepley 26271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`, `DMPlexCreateBasisRotation()` 2628ca3d3a14SMatthew G. Knepley @*/ 2629d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasBasisTransform(DM dm, PetscBool *flg) 2630d71ae5a4SJacob Faibussowitsch { 2631ca3d3a14SMatthew G. Knepley Vec tv; 2632ca3d3a14SMatthew G. Knepley 2633ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2634ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26354f572ea9SToby Isaac PetscAssertPointer(flg, 2); 26369566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 2637ca3d3a14SMatthew G. Knepley *flg = tv ? PETSC_TRUE : PETSC_FALSE; 26383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2639ca3d3a14SMatthew G. Knepley } 2640ca3d3a14SMatthew G. Knepley 2641d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConstructBasisTransform_Internal(DM dm) 2642d71ae5a4SJacob Faibussowitsch { 2643ca3d3a14SMatthew G. Knepley PetscSection s, ts; 2644ca3d3a14SMatthew G. Knepley PetscScalar *ta; 2645ca3d3a14SMatthew G. Knepley PetscInt cdim, pStart, pEnd, p, Nf, f, Nc, dof; 2646ca3d3a14SMatthew G. Knepley 2647ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 26489566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 26499566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 26509566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 26519566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 26529566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->transformDM)); 26539566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm->transformDM, &ts)); 26549566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(ts, Nf)); 26559566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(ts, pStart, pEnd)); 2656ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(s, f, &Nc)); 2658ca3d3a14SMatthew G. Knepley /* We could start to label fields by their transformation properties */ 2659ca3d3a14SMatthew G. Knepley if (Nc != cdim) continue; 2660ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 26619566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, p, f, &dof)); 2662ca3d3a14SMatthew G. Knepley if (!dof) continue; 26639566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(ts, p, f, PetscSqr(cdim))); 26649566063dSJacob Faibussowitsch PetscCall(PetscSectionAddDof(ts, p, PetscSqr(cdim))); 2665ca3d3a14SMatthew G. Knepley } 2666ca3d3a14SMatthew G. Knepley } 26679566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(ts)); 26689566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(dm->transformDM, &dm->transform)); 26699566063dSJacob Faibussowitsch PetscCall(VecGetArray(dm->transform, &ta)); 2670ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 2671ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26729566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof)); 2673ca3d3a14SMatthew G. Knepley if (dof) { 2674ca3d3a14SMatthew G. Knepley PetscReal x[3] = {0.0, 0.0, 0.0}; 2675ca3d3a14SMatthew G. Knepley PetscScalar *tva; 2676ca3d3a14SMatthew G. Knepley const PetscScalar *A; 2677ca3d3a14SMatthew G. Knepley 2678ca3d3a14SMatthew G. Knepley /* TODO Get quadrature point for this dual basis vector for coordinate */ 26799566063dSJacob Faibussowitsch PetscCall((*dm->transformGetMatrix)(dm, x, PETSC_TRUE, &A, dm->transformCtx)); 26809566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm->transformDM, p, f, ta, (void *)&tva)); 26819566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tva, A, PetscSqr(cdim))); 2682ca3d3a14SMatthew G. Knepley } 2683ca3d3a14SMatthew G. Knepley } 2684ca3d3a14SMatthew G. Knepley } 26859566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(dm->transform, &ta)); 26863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2687ca3d3a14SMatthew G. Knepley } 2688ca3d3a14SMatthew G. Knepley 2689d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyTransform(DM dm, DM newdm) 2690d71ae5a4SJacob Faibussowitsch { 2691ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2692ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2693ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(newdm, DM_CLASSID, 2); 2694ca3d3a14SMatthew G. Knepley newdm->transformCtx = dm->transformCtx; 2695ca3d3a14SMatthew G. Knepley newdm->transformSetUp = dm->transformSetUp; 2696ca3d3a14SMatthew G. Knepley newdm->transformDestroy = NULL; 2697ca3d3a14SMatthew G. Knepley newdm->transformGetMatrix = dm->transformGetMatrix; 26989566063dSJacob Faibussowitsch if (newdm->transformSetUp) PetscCall(DMConstructBasisTransform_Internal(newdm)); 26993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2700ca3d3a14SMatthew G. Knepley } 2701ca3d3a14SMatthew G. Knepley 2702bb9467b5SJed Brown /*@C 2703bb7acecfSBarry Smith DMGlobalToLocalHookAdd - adds a callback to be run when `DMGlobalToLocal()` is called 2704baf369e7SPeter Brune 270520f4b53cSBarry Smith Logically Collective 2706baf369e7SPeter Brune 27074165533cSJose E. Roman Input Parameters: 2708bb7acecfSBarry Smith + dm - the `DM` 2709bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMGlobalToLocalBegin()` 2710bb7acecfSBarry Smith . endhook - function to run after `DMGlobalToLocalEnd()` has completed 271120f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2712baf369e7SPeter Brune 271320f4b53cSBarry Smith Calling sequence of `beginhook`: 2714a4e35b19SJacob Faibussowitsch + dm - global `DM` 2715baf369e7SPeter Brune . g - global vector 2716baf369e7SPeter Brune . mode - mode 2717baf369e7SPeter Brune . l - local vector 2718baf369e7SPeter Brune - ctx - optional user-defined function context 2719baf369e7SPeter Brune 272020f4b53cSBarry Smith Calling sequence of `endhook`: 2721a4e35b19SJacob Faibussowitsch + dm - global `DM` 2722a4e35b19SJacob Faibussowitsch . g - global vector 2723a4e35b19SJacob Faibussowitsch . mode - mode 2724a4e35b19SJacob Faibussowitsch . l - local vector 2725baf369e7SPeter Brune - ctx - optional user-defined function context 2726baf369e7SPeter Brune 2727baf369e7SPeter Brune Level: advanced 2728baf369e7SPeter Brune 2729bb7acecfSBarry Smith Note: 2730bb7acecfSBarry Smith The hook may be used to provide, for example, values that represent boundary conditions in the local vectors that do not exist on the global vector. 2731bb7acecfSBarry Smith 27321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocal()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2733baf369e7SPeter Brune @*/ 2734a4e35b19SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), PetscErrorCode (*endhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), void *ctx) 2735d71ae5a4SJacob Faibussowitsch { 2736baf369e7SPeter Brune DMGlobalToLocalHookLink link, *p; 2737baf369e7SPeter Brune 2738baf369e7SPeter Brune PetscFunctionBegin; 2739baf369e7SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2740baf369e7SPeter Brune for (p = &dm->gtolhook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 27419566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2742baf369e7SPeter Brune link->beginhook = beginhook; 2743baf369e7SPeter Brune link->endhook = endhook; 2744baf369e7SPeter Brune link->ctx = ctx; 27450298fd71SBarry Smith link->next = NULL; 2746baf369e7SPeter Brune *p = link; 27473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2748baf369e7SPeter Brune } 2749baf369e7SPeter Brune 2750d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGlobalToLocalHook_Constraints(DM dm, Vec g, InsertMode mode, Vec l, void *ctx) 2751d71ae5a4SJacob Faibussowitsch { 27524c274da1SToby Isaac Mat cMat; 275379769bd5SJed Brown Vec cVec, cBias; 27544c274da1SToby Isaac PetscSection section, cSec; 27554c274da1SToby Isaac PetscInt pStart, pEnd, p, dof; 27564c274da1SToby Isaac 27574c274da1SToby Isaac PetscFunctionBegin; 2758a4e35b19SJacob Faibussowitsch (void)g; 2759a4e35b19SJacob Faibussowitsch (void)ctx; 27604c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 27619566063dSJacob Faibussowitsch PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, &cBias)); 27624c274da1SToby Isaac if (cMat && (mode == INSERT_VALUES || mode == INSERT_ALL_VALUES || mode == INSERT_BC_VALUES)) { 27635db9a05bSToby Isaac PetscInt nRows; 27645db9a05bSToby Isaac 27659566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 27663ba16761SJacob Faibussowitsch if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS); 27679566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 27689566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 27699566063dSJacob Faibussowitsch PetscCall(MatMult(cMat, l, cVec)); 27709566063dSJacob Faibussowitsch if (cBias) PetscCall(VecAXPY(cVec, 1., cBias)); 27719566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 27724c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 27739566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 27744c274da1SToby Isaac if (dof) { 27754c274da1SToby Isaac PetscScalar *vals; 27769566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(cVec, cSec, p, &vals)); 27779566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(l, section, p, vals, INSERT_ALL_VALUES)); 27784c274da1SToby Isaac } 27794c274da1SToby Isaac } 27809566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 27814c274da1SToby Isaac } 27823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27834c274da1SToby Isaac } 27844c274da1SToby Isaac 278547c6ae99SBarry Smith /*@ 278601729b5cSPatrick Sanan DMGlobalToLocal - update local vectors from global vector 278701729b5cSPatrick Sanan 278820f4b53cSBarry Smith Neighbor-wise Collective 278901729b5cSPatrick Sanan 279001729b5cSPatrick Sanan Input Parameters: 2791bb7acecfSBarry Smith + dm - the `DM` object 279201729b5cSPatrick Sanan . g - the global vector 2793bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 279401729b5cSPatrick Sanan - l - the local vector 279501729b5cSPatrick Sanan 279620f4b53cSBarry Smith Level: beginner 279720f4b53cSBarry Smith 279801729b5cSPatrick Sanan Notes: 2799bb7acecfSBarry Smith The communication involved in this update can be overlapped with computation by instead using 2800bb7acecfSBarry Smith `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()`. 2801bb7acecfSBarry Smith 2802bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 280301729b5cSPatrick Sanan 28041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocalHookAdd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, 280560225df5SJacob Faibussowitsch `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, 2806bb7acecfSBarry Smith `DMGlobalToLocalBegin()` `DMGlobalToLocalEnd()` 280701729b5cSPatrick Sanan @*/ 2808d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocal(DM dm, Vec g, InsertMode mode, Vec l) 2809d71ae5a4SJacob Faibussowitsch { 281001729b5cSPatrick Sanan PetscFunctionBegin; 28119566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, g, mode, l)); 28129566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, g, mode, l)); 28133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 281401729b5cSPatrick Sanan } 281501729b5cSPatrick Sanan 281601729b5cSPatrick Sanan /*@ 281747c6ae99SBarry Smith DMGlobalToLocalBegin - Begins updating local vectors from global vector 281847c6ae99SBarry Smith 281920f4b53cSBarry Smith Neighbor-wise Collective 282047c6ae99SBarry Smith 282147c6ae99SBarry Smith Input Parameters: 2822bb7acecfSBarry Smith + dm - the `DM` object 282347c6ae99SBarry Smith . g - the global vector 2824bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 282547c6ae99SBarry Smith - l - the local vector 282647c6ae99SBarry Smith 282701729b5cSPatrick Sanan Level: intermediate 282847c6ae99SBarry Smith 2829bb7acecfSBarry Smith Notes: 2830bb7acecfSBarry Smith The operation is completed with `DMGlobalToLocalEnd()` 2831bb7acecfSBarry Smith 2832bb7acecfSBarry Smith One can perform local computations between the `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` to overlap communication and computation 2833bb7acecfSBarry Smith 2834bb7acecfSBarry Smith `DMGlobalToLocal()` is a short form of `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` 2835bb7acecfSBarry Smith 2836bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 2837bb7acecfSBarry Smith 283860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()` 283947c6ae99SBarry Smith @*/ 2840d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 2841d71ae5a4SJacob Faibussowitsch { 28427128ae9fSMatthew G Knepley PetscSF sf; 2843baf369e7SPeter Brune DMGlobalToLocalHookLink link; 284447c6ae99SBarry Smith 284547c6ae99SBarry Smith PetscFunctionBegin; 2846171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2847baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 28481baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, g, mode, l, link->ctx)); 2849baf369e7SPeter Brune } 28509566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 28517128ae9fSMatthew G Knepley if (sf) { 2852ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2853ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2854d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 28557128ae9fSMatthew G Knepley 28567a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 28579566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 28589566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 28599566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(sf, MPIU_SCALAR, gmtype, gArray, lmtype, lArray, MPI_REPLACE)); 28609566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 28619566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 28627128ae9fSMatthew G Knepley } else { 2863fa1e479aSStefano Zampini PetscUseTypeMethod(dm, globaltolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 28647128ae9fSMatthew G Knepley } 28653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 286647c6ae99SBarry Smith } 286747c6ae99SBarry Smith 286847c6ae99SBarry Smith /*@ 286947c6ae99SBarry Smith DMGlobalToLocalEnd - Ends updating local vectors from global vector 287047c6ae99SBarry Smith 287120f4b53cSBarry Smith Neighbor-wise Collective 287247c6ae99SBarry Smith 287347c6ae99SBarry Smith Input Parameters: 2874bb7acecfSBarry Smith + dm - the `DM` object 287547c6ae99SBarry Smith . g - the global vector 2876bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 287747c6ae99SBarry Smith - l - the local vector 287847c6ae99SBarry Smith 287901729b5cSPatrick Sanan Level: intermediate 288047c6ae99SBarry Smith 2881bb7acecfSBarry Smith Note: 2882bb7acecfSBarry Smith See `DMGlobalToLocalBegin()` for details. 2883bb7acecfSBarry Smith 288460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()` 288547c6ae99SBarry Smith @*/ 2886d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 2887d71ae5a4SJacob Faibussowitsch { 28887128ae9fSMatthew G Knepley PetscSF sf; 2889ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2890ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2891ca3d3a14SMatthew G. Knepley PetscBool transform; 2892baf369e7SPeter Brune DMGlobalToLocalHookLink link; 2893d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 289447c6ae99SBarry Smith 289547c6ae99SBarry Smith PetscFunctionBegin; 2896171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 28979566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 28989566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 28997128ae9fSMatthew G Knepley if (sf) { 29007a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 29017128ae9fSMatthew G Knepley 29029566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 29039566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 29049566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, gArray, lArray, MPI_REPLACE)); 29059566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 29069566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 29079566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexGlobalToLocalBasis(dm, l)); 29087128ae9fSMatthew G Knepley } else { 2909fa1e479aSStefano Zampini PetscUseTypeMethod(dm, globaltolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 29107128ae9fSMatthew G Knepley } 29119566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalHook_Constraints(dm, g, mode, l, NULL)); 2912baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 29139566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 2914baf369e7SPeter Brune } 29153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 291647c6ae99SBarry Smith } 291747c6ae99SBarry Smith 2918d4d07f1eSToby Isaac /*@C 2919d4d07f1eSToby Isaac DMLocalToGlobalHookAdd - adds a callback to be run when a local to global is called 2920d4d07f1eSToby Isaac 292120f4b53cSBarry Smith Logically Collective 2922d4d07f1eSToby Isaac 29234165533cSJose E. Roman Input Parameters: 2924bb7acecfSBarry Smith + dm - the `DM` 2925bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMLocalToGlobalBegin()` 2926bb7acecfSBarry Smith . endhook - function to run after `DMLocalToGlobalEnd()` has completed 292720f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2928d4d07f1eSToby Isaac 292920f4b53cSBarry Smith Calling sequence of `beginhook`: 2930a4e35b19SJacob Faibussowitsch + global - global `DM` 2931d4d07f1eSToby Isaac . l - local vector 2932d4d07f1eSToby Isaac . mode - mode 2933d4d07f1eSToby Isaac . g - global vector 2934d4d07f1eSToby Isaac - ctx - optional user-defined function context 2935d4d07f1eSToby Isaac 293620f4b53cSBarry Smith Calling sequence of `endhook`: 2937bb7acecfSBarry Smith + global - global `DM` 2938d4d07f1eSToby Isaac . l - local vector 2939d4d07f1eSToby Isaac . mode - mode 2940d4d07f1eSToby Isaac . g - global vector 2941d4d07f1eSToby Isaac - ctx - optional user-defined function context 2942d4d07f1eSToby Isaac 2943d4d07f1eSToby Isaac Level: advanced 2944d4d07f1eSToby Isaac 29451cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMRefineHookAdd()`, `DMGlobalToLocalHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2946d4d07f1eSToby Isaac @*/ 2947a4e35b19SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), PetscErrorCode (*endhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), void *ctx) 2948d71ae5a4SJacob Faibussowitsch { 2949d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, *p; 2950d4d07f1eSToby Isaac 2951d4d07f1eSToby Isaac PetscFunctionBegin; 2952d4d07f1eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2953d4d07f1eSToby Isaac for (p = &dm->ltoghook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 29549566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2955d4d07f1eSToby Isaac link->beginhook = beginhook; 2956d4d07f1eSToby Isaac link->endhook = endhook; 2957d4d07f1eSToby Isaac link->ctx = ctx; 2958d4d07f1eSToby Isaac link->next = NULL; 2959d4d07f1eSToby Isaac *p = link; 29603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2961d4d07f1eSToby Isaac } 2962d4d07f1eSToby Isaac 2963d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMLocalToGlobalHook_Constraints(DM dm, Vec l, InsertMode mode, Vec g, void *ctx) 2964d71ae5a4SJacob Faibussowitsch { 29654c274da1SToby Isaac PetscFunctionBegin; 2966a4e35b19SJacob Faibussowitsch (void)g; 2967a4e35b19SJacob Faibussowitsch (void)ctx; 29684c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29692b6b7d09SToby Isaac if (mode == ADD_VALUES || mode == ADD_ALL_VALUES || mode == ADD_BC_VALUES) { 29702b6b7d09SToby Isaac Mat cMat; 29712b6b7d09SToby Isaac Vec cVec; 29725db9a05bSToby Isaac PetscInt nRows; 29732b6b7d09SToby Isaac PetscSection section, cSec; 29742b6b7d09SToby Isaac PetscInt pStart, pEnd, p, dof; 29752b6b7d09SToby Isaac 29762b6b7d09SToby Isaac PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, NULL)); 29772b6b7d09SToby Isaac if (!cMat) PetscFunctionReturn(PETSC_SUCCESS); 29785db9a05bSToby Isaac 29799566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 29803ba16761SJacob Faibussowitsch if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS); 29819566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 29829566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 29839566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 29844c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 29859566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 29864c274da1SToby Isaac if (dof) { 29874c274da1SToby Isaac PetscInt d; 29884c274da1SToby Isaac PetscScalar *vals; 29899566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(l, section, p, &vals)); 29909566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(cVec, cSec, p, vals, mode)); 29914c274da1SToby Isaac /* for this to be the true transpose, we have to zero the values that 29924c274da1SToby Isaac * we just extracted */ 2993ad540459SPierre Jolivet for (d = 0; d < dof; d++) vals[d] = 0.; 29944c274da1SToby Isaac } 29954c274da1SToby Isaac } 29969566063dSJacob Faibussowitsch PetscCall(MatMultTransposeAdd(cMat, cVec, l, l)); 29979566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 29984c274da1SToby Isaac } 29993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30004c274da1SToby Isaac } 300101729b5cSPatrick Sanan /*@ 300201729b5cSPatrick Sanan DMLocalToGlobal - updates global vectors from local vectors 300301729b5cSPatrick Sanan 300420f4b53cSBarry Smith Neighbor-wise Collective 300501729b5cSPatrick Sanan 300601729b5cSPatrick Sanan Input Parameters: 3007bb7acecfSBarry Smith + dm - the `DM` object 300801729b5cSPatrick Sanan . l - the local vector 3009bb7acecfSBarry Smith . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 301001729b5cSPatrick Sanan - g - the global vector 301101729b5cSPatrick Sanan 301220f4b53cSBarry Smith Level: beginner 301320f4b53cSBarry Smith 301401729b5cSPatrick Sanan Notes: 301501729b5cSPatrick Sanan The communication involved in this update can be overlapped with computation by using 3016bb7acecfSBarry Smith `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()`. 301701729b5cSPatrick Sanan 3018bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 3019bb7acecfSBarry Smith 3020bb7acecfSBarry Smith `INSERT_VALUES` is not supported for `DMDA`; in that case simply compute the values directly into a global vector instead of a local one. 3021bb7acecfSBarry Smith 3022bb7acecfSBarry Smith Use `DMLocalToGlobalHookAdd()` to add additional operations that are performed on the data during the update process 302301729b5cSPatrick Sanan 30241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`, `DMLocalToGlobalHookAdd()`, `DMGlobaToLocallHookAdd()` 302501729b5cSPatrick Sanan @*/ 3026d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobal(DM dm, Vec l, InsertMode mode, Vec g) 3027d71ae5a4SJacob Faibussowitsch { 302801729b5cSPatrick Sanan PetscFunctionBegin; 30299566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, l, mode, g)); 30309566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, l, mode, g)); 30313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 303201729b5cSPatrick Sanan } 30334c274da1SToby Isaac 303447c6ae99SBarry Smith /*@ 303501729b5cSPatrick Sanan DMLocalToGlobalBegin - begins updating global vectors from local vectors 30369a42bb27SBarry Smith 303720f4b53cSBarry Smith Neighbor-wise Collective 30389a42bb27SBarry Smith 30399a42bb27SBarry Smith Input Parameters: 3040bb7acecfSBarry Smith + dm - the `DM` object 3041f6813fd5SJed Brown . l - the local vector 3042aa624791SPierre Jolivet . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 30431eb28f2eSBarry Smith - g - the global vector 30449a42bb27SBarry Smith 304520f4b53cSBarry Smith Level: intermediate 304620f4b53cSBarry Smith 304795452b02SPatrick Sanan Notes: 3048bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 3049bb7acecfSBarry Smith 3050bb7acecfSBarry Smith `INSERT_VALUES is` not supported for `DMDA`, in that case simply compute the values directly into a global vector instead of a local one. 3051bb7acecfSBarry Smith 3052bb7acecfSBarry Smith Use `DMLocalToGlobalEnd()` to complete the communication process. 3053bb7acecfSBarry Smith 3054bb7acecfSBarry Smith `DMLocalToGlobal()` is a short form of `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()` 3055bb7acecfSBarry Smith 3056bb7acecfSBarry Smith `DMLocalToGlobalHookAdd()` may be used to provide additional operations that are performed during the update process. 30579a42bb27SBarry Smith 30581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()` 30599a42bb27SBarry Smith @*/ 3060d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalBegin(DM dm, Vec l, InsertMode mode, Vec g) 3061d71ae5a4SJacob Faibussowitsch { 30627128ae9fSMatthew G Knepley PetscSF sf; 306384330215SMatthew G. Knepley PetscSection s, gs; 3064d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3065ca3d3a14SMatthew G. Knepley Vec tmpl; 3066ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3067ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3068fa88e482SJed Brown PetscBool isInsert, transform, l_inplace = PETSC_FALSE, g_inplace = PETSC_FALSE; 3069d0295fc0SJunchao Zhang PetscMemType lmtype = PETSC_MEMTYPE_HOST, gmtype = PETSC_MEMTYPE_HOST; 30709a42bb27SBarry Smith 30719a42bb27SBarry Smith PetscFunctionBegin; 3072171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3073d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 30741baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, l, mode, g, link->ctx)); 3075d4d07f1eSToby Isaac } 30769566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalHook_Constraints(dm, l, mode, g, NULL)); 30779566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 30789566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 30797128ae9fSMatthew G Knepley switch (mode) { 30807128ae9fSMatthew G Knepley case INSERT_VALUES: 30817128ae9fSMatthew G Knepley case INSERT_ALL_VALUES: 3082d71ae5a4SJacob Faibussowitsch case INSERT_BC_VALUES: 3083d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3084d71ae5a4SJacob Faibussowitsch break; 30857128ae9fSMatthew G Knepley case ADD_VALUES: 30867128ae9fSMatthew G Knepley case ADD_ALL_VALUES: 3087d71ae5a4SJacob Faibussowitsch case ADD_BC_VALUES: 3088d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3089d71ae5a4SJacob Faibussowitsch break; 3090d71ae5a4SJacob Faibussowitsch default: 3091d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 30927128ae9fSMatthew G Knepley } 3093ca3d3a14SMatthew G. Knepley if ((sf && !isInsert) || (s && isInsert)) { 30949566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3095ca3d3a14SMatthew G. Knepley if (transform) { 30969566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 30979566063dSJacob Faibussowitsch PetscCall(VecCopy(l, tmpl)); 30989566063dSJacob Faibussowitsch PetscCall(DMPlexLocalToGlobalBasis(dm, tmpl)); 30999566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3100fa88e482SJed Brown } else if (isInsert) { 31019566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l, &lArray)); 3102fa88e482SJed Brown } else { 31039566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, &lmtype)); 3104fa88e482SJed Brown l_inplace = PETSC_TRUE; 3105ca3d3a14SMatthew G. Knepley } 3106fa88e482SJed Brown if (s && isInsert) { 31079566063dSJacob Faibussowitsch PetscCall(VecGetArray(g, &gArray)); 3108fa88e482SJed Brown } else { 31099566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, &gmtype)); 3110fa88e482SJed Brown g_inplace = PETSC_TRUE; 3111fa88e482SJed Brown } 3112ca3d3a14SMatthew G. Knepley if (sf && !isInsert) { 31139566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(sf, MPIU_SCALAR, lmtype, lArray, gmtype, gArray, MPIU_SUM)); 311484330215SMatthew G. Knepley } else if (s && isInsert) { 311584330215SMatthew G. Knepley PetscInt gStart, pStart, pEnd, p; 311684330215SMatthew G. Knepley 31179566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gs)); 31189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 31199566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(g, &gStart, NULL)); 312084330215SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 3121b3b16f48SMatthew G. Knepley PetscInt dof, gdof, cdof, gcdof, off, goff, d, e; 312284330215SMatthew G. Knepley 31239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s, p, &dof)); 31249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(gs, p, &gdof)); 31259566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s, p, &cdof)); 31269566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(gs, p, &gcdof)); 31279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(s, p, &off)); 31289566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(gs, p, &goff)); 3129b3b16f48SMatthew G. Knepley /* Ignore off-process data and points with no global data */ 313003442857SMatthew G. Knepley if (!gdof || goff < 0) continue; 31317a8be351SBarry Smith PetscCheck(dof == gdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 3132b3b16f48SMatthew G. Knepley /* If no constraints are enforced in the global vector */ 3133b3b16f48SMatthew G. Knepley if (!gcdof) { 313484330215SMatthew G. Knepley for (d = 0; d < dof; ++d) gArray[goff - gStart + d] = lArray[off + d]; 3135b3b16f48SMatthew G. Knepley /* If constraints are enforced in the global vector */ 3136b3b16f48SMatthew G. Knepley } else if (cdof == gcdof) { 313784330215SMatthew G. Knepley const PetscInt *cdofs; 313884330215SMatthew G. Knepley PetscInt cind = 0; 313984330215SMatthew G. Knepley 31409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(s, p, &cdofs)); 3141b3b16f48SMatthew G. Knepley for (d = 0, e = 0; d < dof; ++d) { 31429371c9d4SSatish Balay if ((cind < cdof) && (d == cdofs[cind])) { 31439371c9d4SSatish Balay ++cind; 31449371c9d4SSatish Balay continue; 31459371c9d4SSatish Balay } 3146b3b16f48SMatthew G. Knepley gArray[goff - gStart + e++] = lArray[off + d]; 314784330215SMatthew G. Knepley } 31487a8be351SBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 314984330215SMatthew G. Knepley } 3150ca3d3a14SMatthew G. Knepley } 3151fa88e482SJed Brown if (g_inplace) { 31529566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 3153fa88e482SJed Brown } else { 31549566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(g, &gArray)); 3155fa88e482SJed Brown } 3156ca3d3a14SMatthew G. Knepley if (transform) { 31579566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 31589566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3159fa88e482SJed Brown } else if (l_inplace) { 31609566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3161ca3d3a14SMatthew G. Knepley } else { 31629566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l, &lArray)); 3163ca3d3a14SMatthew G. Knepley } 31647128ae9fSMatthew G Knepley } else { 3165fa1e479aSStefano Zampini PetscUseTypeMethod(dm, localtoglobalbegin, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g); 31667128ae9fSMatthew G Knepley } 31673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31689a42bb27SBarry Smith } 31699a42bb27SBarry Smith 31709a42bb27SBarry Smith /*@ 31719a42bb27SBarry Smith DMLocalToGlobalEnd - updates global vectors from local vectors 317247c6ae99SBarry Smith 317320f4b53cSBarry Smith Neighbor-wise Collective 317447c6ae99SBarry Smith 317547c6ae99SBarry Smith Input Parameters: 3176bb7acecfSBarry Smith + dm - the `DM` object 3177f6813fd5SJed Brown . l - the local vector 3178bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 3179f6813fd5SJed Brown - g - the global vector 318047c6ae99SBarry Smith 318101729b5cSPatrick Sanan Level: intermediate 318247c6ae99SBarry Smith 3183bb7acecfSBarry Smith Note: 3184bb7acecfSBarry Smith See `DMLocalToGlobalBegin()` for full details 3185bb7acecfSBarry Smith 318660225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()` 318747c6ae99SBarry Smith @*/ 3188d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalEnd(DM dm, Vec l, InsertMode mode, Vec g) 3189d71ae5a4SJacob Faibussowitsch { 31907128ae9fSMatthew G Knepley PetscSF sf; 319184330215SMatthew G. Knepley PetscSection s; 3192d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3193ca3d3a14SMatthew G. Knepley PetscBool isInsert, transform; 319447c6ae99SBarry Smith 319547c6ae99SBarry Smith PetscFunctionBegin; 3196171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 31979566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 31989566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 31997128ae9fSMatthew G Knepley switch (mode) { 32007128ae9fSMatthew G Knepley case INSERT_VALUES: 3201d71ae5a4SJacob Faibussowitsch case INSERT_ALL_VALUES: 3202d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3203d71ae5a4SJacob Faibussowitsch break; 32047128ae9fSMatthew G Knepley case ADD_VALUES: 3205d71ae5a4SJacob Faibussowitsch case ADD_ALL_VALUES: 3206d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3207d71ae5a4SJacob Faibussowitsch break; 3208d71ae5a4SJacob Faibussowitsch default: 3209d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 32107128ae9fSMatthew G Knepley } 321184330215SMatthew G. Knepley if (sf && !isInsert) { 3212ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3213ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3214ca3d3a14SMatthew G. Knepley Vec tmpl; 321584330215SMatthew G. Knepley 32169566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3217ca3d3a14SMatthew G. Knepley if (transform) { 32189566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 32199566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3220ca3d3a14SMatthew G. Knepley } else { 32219566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, NULL)); 3222ca3d3a14SMatthew G. Knepley } 32239566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, NULL)); 32249566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_SCALAR, lArray, gArray, MPIU_SUM)); 3225ca3d3a14SMatthew G. Knepley if (transform) { 32269566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 32279566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3228ca3d3a14SMatthew G. Knepley } else { 32299566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3230ca3d3a14SMatthew G. Knepley } 32319566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 323284330215SMatthew G. Knepley } else if (s && isInsert) { 32337128ae9fSMatthew G Knepley } else { 3234fa1e479aSStefano Zampini PetscUseTypeMethod(dm, localtoglobalend, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g); 32357128ae9fSMatthew G Knepley } 3236d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 32379566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 3238d4d07f1eSToby Isaac } 32393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 324047c6ae99SBarry Smith } 324147c6ae99SBarry Smith 3242f089877aSRichard Tran Mills /*@ 3243a4e35b19SJacob Faibussowitsch DMLocalToLocalBegin - Begins the process of mapping values from a local vector (that include 3244a4e35b19SJacob Faibussowitsch ghost points that contain irrelevant values) to another local vector where the ghost points 3245a4e35b19SJacob Faibussowitsch in the second are set correctly from values on other MPI ranks. 3246f089877aSRichard Tran Mills 324720f4b53cSBarry Smith Neighbor-wise Collective 3248f089877aSRichard Tran Mills 3249f089877aSRichard Tran Mills Input Parameters: 3250bb7acecfSBarry Smith + dm - the `DM` object 3251bc0a1609SRichard Tran Mills . g - the original local vector 3252bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3253f089877aSRichard Tran Mills 3254bc0a1609SRichard Tran Mills Output Parameter: 3255bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3256f089877aSRichard Tran Mills 3257f089877aSRichard Tran Mills Level: intermediate 3258f089877aSRichard Tran Mills 325973ff1848SBarry Smith Note: 3260a4e35b19SJacob Faibussowitsch Must be followed by `DMLocalToLocalEnd()`. 3261a4e35b19SJacob Faibussowitsch 326260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3263f089877aSRichard Tran Mills @*/ 3264d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 3265d71ae5a4SJacob Faibussowitsch { 3266f089877aSRichard Tran Mills PetscFunctionBegin; 3267f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32689f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 32699f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 32709f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 32713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3272f089877aSRichard Tran Mills } 3273f089877aSRichard Tran Mills 3274f089877aSRichard Tran Mills /*@ 3275bb7acecfSBarry Smith DMLocalToLocalEnd - Maps from a local vector to another local vector where the ghost 3276bb7acecfSBarry Smith points in the second are set correctly. Must be preceded by `DMLocalToLocalBegin()`. 3277f089877aSRichard Tran Mills 327820f4b53cSBarry Smith Neighbor-wise Collective 3279f089877aSRichard Tran Mills 3280f089877aSRichard Tran Mills Input Parameters: 328160225df5SJacob Faibussowitsch + dm - the `DM` object 3282bc0a1609SRichard Tran Mills . g - the original local vector 3283bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3284f089877aSRichard Tran Mills 3285bc0a1609SRichard Tran Mills Output Parameter: 3286bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3287f089877aSRichard Tran Mills 3288f089877aSRichard Tran Mills Level: intermediate 3289f089877aSRichard Tran Mills 329060225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3291f089877aSRichard Tran Mills @*/ 3292d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 3293d71ae5a4SJacob Faibussowitsch { 3294f089877aSRichard Tran Mills PetscFunctionBegin; 3295f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32969f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 32979f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 32989f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 32993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3300f089877aSRichard Tran Mills } 3301f089877aSRichard Tran Mills 330247c6ae99SBarry Smith /*@ 3303bb7acecfSBarry Smith DMCoarsen - Coarsens a `DM` object using a standard, non-adaptive coarsening of the underlying mesh 330447c6ae99SBarry Smith 330520f4b53cSBarry Smith Collective 330647c6ae99SBarry Smith 3307d8d19677SJose E. Roman Input Parameters: 3308bb7acecfSBarry Smith + dm - the `DM` object 330920f4b53cSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`) 331047c6ae99SBarry Smith 331147c6ae99SBarry Smith Output Parameter: 3312bb7acecfSBarry Smith . dmc - the coarsened `DM` 331347c6ae99SBarry Smith 331447c6ae99SBarry Smith Level: developer 331547c6ae99SBarry Smith 331673ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`, 331773ff1848SBarry Smith `DMCoarsenHookAdd()`, `DMCoarsenHookRemove()` 331847c6ae99SBarry Smith @*/ 3319d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsen(DM dm, MPI_Comm comm, DM *dmc) 3320d71ae5a4SJacob Faibussowitsch { 3321b17ce1afSJed Brown DMCoarsenHookLink link; 332247c6ae99SBarry Smith 332347c6ae99SBarry Smith PetscFunctionBegin; 3324171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 33259566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Coarsen, dm, 0, 0, 0)); 3326dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, coarsen, comm, dmc); 3327b9d85ea2SLisandro Dalcin if (*dmc) { 3328a3574896SRichard Tran Mills (*dmc)->bind_below = dm->bind_below; /* Propagate this from parent DM; otherwise -dm_bind_below will be useless for multigrid cases. */ 33299566063dSJacob Faibussowitsch PetscCall(DMSetCoarseDM(dm, *dmc)); 333043842a1eSJed Brown (*dmc)->ops->creatematrix = dm->ops->creatematrix; 33319566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmc)); 3332644e2e5bSBarry Smith (*dmc)->ctx = dm->ctx; 33330598a293SJed Brown (*dmc)->levelup = dm->levelup; 3334656b349aSBarry Smith (*dmc)->leveldown = dm->leveldown + 1; 33359566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmc, dm->mattype)); 3336b17ce1afSJed Brown for (link = dm->coarsenhook; link; link = link->next) { 33379566063dSJacob Faibussowitsch if (link->coarsenhook) PetscCall((*link->coarsenhook)(dm, *dmc, link->ctx)); 3338b17ce1afSJed Brown } 3339b9d85ea2SLisandro Dalcin } 33409566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Coarsen, dm, 0, 0, 0)); 33417a8be351SBarry Smith PetscCheck(*dmc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "NULL coarse mesh produced"); 33423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3343b17ce1afSJed Brown } 3344b17ce1afSJed Brown 3345bb9467b5SJed Brown /*@C 3346b17ce1afSJed Brown DMCoarsenHookAdd - adds a callback to be run when restricting a nonlinear problem to the coarse grid 3347b17ce1afSJed Brown 334820f4b53cSBarry Smith Logically Collective; No Fortran Support 3349b17ce1afSJed Brown 33504165533cSJose E. Roman Input Parameters: 3351bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3352b17ce1afSJed Brown . coarsenhook - function to run when setting up a coarser level 3353bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels (called once per `SNESSolve()`) 335420f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3355b17ce1afSJed Brown 335620f4b53cSBarry Smith Calling sequence of `coarsenhook`: 3357bb7acecfSBarry Smith + fine - fine level `DM` 3358bb7acecfSBarry Smith . coarse - coarse level `DM` to restrict problem to 3359b17ce1afSJed Brown - ctx - optional user-defined function context 3360b17ce1afSJed Brown 336120f4b53cSBarry Smith Calling sequence of `restricthook`: 3362bb7acecfSBarry Smith + fine - fine level `DM` 3363bb7acecfSBarry Smith . mrestrict - matrix restricting a fine-level solution to the coarse grid, usually the transpose of the interpolation 3364c833c3b5SJed Brown . rscale - scaling vector for restriction 3365c833c3b5SJed Brown . inject - matrix restricting by injection 3366b17ce1afSJed Brown . coarse - coarse level DM to update 3367b17ce1afSJed Brown - ctx - optional user-defined function context 3368b17ce1afSJed Brown 3369b17ce1afSJed Brown Level: advanced 3370b17ce1afSJed Brown 3371b17ce1afSJed Brown Notes: 3372bb7acecfSBarry Smith This function is only needed if auxiliary data, attached to the `DM` with `PetscObjectCompose()`, needs to be set up or passed from the fine `DM` to the coarse `DM`. 3373b17ce1afSJed Brown 3374b17ce1afSJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 3375b17ce1afSJed Brown 3376b17ce1afSJed Brown In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3377bb7acecfSBarry Smith extract the finest level information from its context (instead of from the `SNES`). 3378b17ce1afSJed Brown 3379bb7acecfSBarry Smith The hooks are automatically called by `DMRestrict()` 3380bb7acecfSBarry Smith 33811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3382b17ce1afSJed Brown @*/ 3383a4e35b19SJacob Faibussowitsch PetscErrorCode DMCoarsenHookAdd(DM fine, PetscErrorCode (*coarsenhook)(DM fine, DM coarse, void *ctx), PetscErrorCode (*restricthook)(DM fine, Mat mrestrict, Vec rscale, Mat inject, DM coarse, void *ctx), void *ctx) 3384d71ae5a4SJacob Faibussowitsch { 3385b17ce1afSJed Brown DMCoarsenHookLink link, *p; 3386b17ce1afSJed Brown 3387b17ce1afSJed Brown PetscFunctionBegin; 3388b17ce1afSJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 33891e3d8eccSJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 33903ba16761SJacob Faibussowitsch if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 33911e3d8eccSJed Brown } 33929566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 3393b17ce1afSJed Brown link->coarsenhook = coarsenhook; 3394b17ce1afSJed Brown link->restricthook = restricthook; 3395b17ce1afSJed Brown link->ctx = ctx; 33960298fd71SBarry Smith link->next = NULL; 3397b17ce1afSJed Brown *p = link; 33983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3399b17ce1afSJed Brown } 3400b17ce1afSJed Brown 3401dc822a44SJed Brown /*@C 3402bb7acecfSBarry Smith DMCoarsenHookRemove - remove a callback set with `DMCoarsenHookAdd()` 3403dc822a44SJed Brown 340420f4b53cSBarry Smith Logically Collective; No Fortran Support 3405dc822a44SJed Brown 34064165533cSJose E. Roman Input Parameters: 3407bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3408dc822a44SJed Brown . coarsenhook - function to run when setting up a coarser level 3409bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels 341020f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3411dc822a44SJed Brown 3412dc822a44SJed Brown Level: advanced 3413dc822a44SJed Brown 341473ff1848SBarry Smith Notes: 341573ff1848SBarry Smith This function does nothing if the `coarsenhook` is not in the list. 341673ff1848SBarry Smith 341773ff1848SBarry Smith See `DMCoarsenHookAdd()` for the calling sequence of `coarsenhook` and `restricthook` 3418dc822a44SJed Brown 34191cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3420dc822a44SJed Brown @*/ 3421d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookRemove(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx) 3422d71ae5a4SJacob Faibussowitsch { 3423dc822a44SJed Brown DMCoarsenHookLink link, *p; 3424dc822a44SJed Brown 3425dc822a44SJed Brown PetscFunctionBegin; 3426dc822a44SJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 3427dc822a44SJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3428dc822a44SJed Brown if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3429dc822a44SJed Brown link = *p; 3430dc822a44SJed Brown *p = link->next; 34319566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3432dc822a44SJed Brown break; 3433dc822a44SJed Brown } 3434dc822a44SJed Brown } 34353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3436dc822a44SJed Brown } 3437dc822a44SJed Brown 3438b17ce1afSJed Brown /*@ 3439bb7acecfSBarry Smith DMRestrict - restricts user-defined problem data to a coarser `DM` by running hooks registered by `DMCoarsenHookAdd()` 3440b17ce1afSJed Brown 3441b17ce1afSJed Brown Collective if any hooks are 3442b17ce1afSJed Brown 34434165533cSJose E. Roman Input Parameters: 3444bb7acecfSBarry Smith + fine - finer `DM` from which the data is obtained 3445bb7acecfSBarry Smith . restrct - restriction matrix, apply using `MatRestrict()`, usually the transpose of the interpolation 3446e91eccc2SStefano Zampini . rscale - scaling vector for restriction 3447bb7acecfSBarry Smith . inject - injection matrix, also use `MatRestrict()` 344820f4b53cSBarry Smith - coarse - coarser `DM` to update 3449b17ce1afSJed Brown 3450b17ce1afSJed Brown Level: developer 3451b17ce1afSJed Brown 345273ff1848SBarry Smith Developer Note: 3453bb7acecfSBarry Smith Though this routine is called `DMRestrict()` the hooks are added with `DMCoarsenHookAdd()`, a consistent terminology would be better 3454bb7acecfSBarry Smith 34551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMInterpolate()`, `DMRefineHookAdd()` 3456b17ce1afSJed Brown @*/ 3457d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestrict(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse) 3458d71ae5a4SJacob Faibussowitsch { 3459b17ce1afSJed Brown DMCoarsenHookLink link; 3460b17ce1afSJed Brown 3461b17ce1afSJed Brown PetscFunctionBegin; 3462b17ce1afSJed Brown for (link = fine->coarsenhook; link; link = link->next) { 34631baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(fine, restrct, rscale, inject, coarse, link->ctx)); 3464b17ce1afSJed Brown } 34653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 346647c6ae99SBarry Smith } 346747c6ae99SBarry Smith 3468bb9467b5SJed Brown /*@C 346973ff1848SBarry Smith DMSubDomainHookAdd - adds a callback to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()` 34705dbd56e3SPeter Brune 347120f4b53cSBarry Smith Logically Collective; No Fortran Support 34725dbd56e3SPeter Brune 34734165533cSJose E. Roman Input Parameters: 3474bb7acecfSBarry Smith + global - global `DM` 3475bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 34765dbd56e3SPeter Brune . restricthook - function to run to update data on block solve (at the beginning of the block solve) 347720f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 34785dbd56e3SPeter Brune 347920f4b53cSBarry Smith Calling sequence of `ddhook`: 3480bb7acecfSBarry Smith + global - global `DM` 348173ff1848SBarry Smith . block - subdomain `DM` 3482ec4806b8SPeter Brune - ctx - optional user-defined function context 3483ec4806b8SPeter Brune 348420f4b53cSBarry Smith Calling sequence of `restricthook`: 3485bb7acecfSBarry Smith + global - global `DM` 348673ff1848SBarry Smith . out - scatter to the outer (with ghost and overlap points) sub vector 348773ff1848SBarry Smith . in - scatter to sub vector values only owned locally 348873ff1848SBarry Smith . block - subdomain `DM` 34895dbd56e3SPeter Brune - ctx - optional user-defined function context 34905dbd56e3SPeter Brune 34915dbd56e3SPeter Brune Level: advanced 34925dbd56e3SPeter Brune 34935dbd56e3SPeter Brune Notes: 349473ff1848SBarry Smith This function can be used if auxiliary data needs to be set up on subdomain `DM`s. 34955dbd56e3SPeter Brune 34965dbd56e3SPeter Brune If this function is called multiple times, the hooks will be run in the order they are added. 34975dbd56e3SPeter Brune 34985dbd56e3SPeter Brune In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3499bb7acecfSBarry Smith extract the global information from its context (instead of from the `SNES`). 35005dbd56e3SPeter Brune 350173ff1848SBarry Smith Developer Note: 350273ff1848SBarry Smith It is unclear what "block solve" means within the definition of `restricthook` 350373ff1848SBarry Smith 350473ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`, `DMCreateDomainDecomposition()` 35055dbd56e3SPeter Brune @*/ 3506a4e35b19SJacob Faibussowitsch PetscErrorCode DMSubDomainHookAdd(DM global, PetscErrorCode (*ddhook)(DM global, DM block, void *ctx), PetscErrorCode (*restricthook)(DM global, VecScatter out, VecScatter in, DM block, void *ctx), void *ctx) 3507d71ae5a4SJacob Faibussowitsch { 3508be081cd6SPeter Brune DMSubDomainHookLink link, *p; 35095dbd56e3SPeter Brune 35105dbd56e3SPeter Brune PetscFunctionBegin; 35115dbd56e3SPeter Brune PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3512b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 35133ba16761SJacob Faibussowitsch if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 3514b3a6b972SJed Brown } 35159566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 35165dbd56e3SPeter Brune link->restricthook = restricthook; 3517be081cd6SPeter Brune link->ddhook = ddhook; 35185dbd56e3SPeter Brune link->ctx = ctx; 35190298fd71SBarry Smith link->next = NULL; 35205dbd56e3SPeter Brune *p = link; 35213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35225dbd56e3SPeter Brune } 35235dbd56e3SPeter Brune 3524b3a6b972SJed Brown /*@C 352573ff1848SBarry Smith DMSubDomainHookRemove - remove a callback from the list to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()` 3526b3a6b972SJed Brown 352720f4b53cSBarry Smith Logically Collective; No Fortran Support 3528b3a6b972SJed Brown 35294165533cSJose E. Roman Input Parameters: 3530bb7acecfSBarry Smith + global - global `DM` 3531bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 3532b3a6b972SJed Brown . restricthook - function to run to update data on block solve (at the beginning of the block solve) 353320f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3534b3a6b972SJed Brown 3535b3a6b972SJed Brown Level: advanced 3536b3a6b972SJed Brown 353773ff1848SBarry Smith Note: 353873ff1848SBarry Smith See `DMSubDomainHookAdd()` for the calling sequences of `ddhook` and `restricthook` 353973ff1848SBarry Smith 354073ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`, 354173ff1848SBarry Smith `DMCreateDomainDecomposition()` 3542b3a6b972SJed Brown @*/ 3543d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookRemove(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx) 3544d71ae5a4SJacob Faibussowitsch { 3545b3a6b972SJed Brown DMSubDomainHookLink link, *p; 3546b3a6b972SJed Brown 3547b3a6b972SJed Brown PetscFunctionBegin; 3548b3a6b972SJed Brown PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3549b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3550b3a6b972SJed Brown if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3551b3a6b972SJed Brown link = *p; 3552b3a6b972SJed Brown *p = link->next; 35539566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3554b3a6b972SJed Brown break; 3555b3a6b972SJed Brown } 3556b3a6b972SJed Brown } 35573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3558b3a6b972SJed Brown } 3559b3a6b972SJed Brown 35605dbd56e3SPeter Brune /*@ 356173ff1848SBarry Smith DMSubDomainRestrict - restricts user-defined problem data to a subdomain `DM` by running hooks registered by `DMSubDomainHookAdd()` 35625dbd56e3SPeter Brune 35635dbd56e3SPeter Brune Collective if any hooks are 35645dbd56e3SPeter Brune 35654165533cSJose E. Roman Input Parameters: 3566a4e35b19SJacob Faibussowitsch + global - The global `DM` to use as a base 3567a4e35b19SJacob Faibussowitsch . oscatter - The scatter from domain global vector filling subdomain global vector with overlap 3568a4e35b19SJacob Faibussowitsch . gscatter - The scatter from domain global vector filling subdomain local vector with ghosts 3569a4e35b19SJacob Faibussowitsch - subdm - The subdomain `DM` to update 35705dbd56e3SPeter Brune 35715dbd56e3SPeter Brune Level: developer 35725dbd56e3SPeter Brune 357373ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMCreateDomainDecomposition()` 35745dbd56e3SPeter Brune @*/ 3575d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainRestrict(DM global, VecScatter oscatter, VecScatter gscatter, DM subdm) 3576d71ae5a4SJacob Faibussowitsch { 3577be081cd6SPeter Brune DMSubDomainHookLink link; 35785dbd56e3SPeter Brune 35795dbd56e3SPeter Brune PetscFunctionBegin; 3580be081cd6SPeter Brune for (link = global->subdomainhook; link; link = link->next) { 35811baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(global, oscatter, gscatter, subdm, link->ctx)); 35825dbd56e3SPeter Brune } 35833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35845dbd56e3SPeter Brune } 35855dbd56e3SPeter Brune 35865fe1f584SPeter Brune /*@ 3587bb7acecfSBarry Smith DMGetCoarsenLevel - Gets the number of coarsenings that have generated this `DM`. 35885fe1f584SPeter Brune 35895fe1f584SPeter Brune Not Collective 35905fe1f584SPeter Brune 35915fe1f584SPeter Brune Input Parameter: 3592bb7acecfSBarry Smith . dm - the `DM` object 35935fe1f584SPeter Brune 35945fe1f584SPeter Brune Output Parameter: 35956a7d9d85SPeter Brune . level - number of coarsenings 35965fe1f584SPeter Brune 35975fe1f584SPeter Brune Level: developer 35985fe1f584SPeter Brune 35991cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMSetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 36005fe1f584SPeter Brune @*/ 3601d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarsenLevel(DM dm, PetscInt *level) 3602d71ae5a4SJacob Faibussowitsch { 36035fe1f584SPeter Brune PetscFunctionBegin; 36045fe1f584SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36054f572ea9SToby Isaac PetscAssertPointer(level, 2); 36065fe1f584SPeter Brune *level = dm->leveldown; 36073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36085fe1f584SPeter Brune } 36095fe1f584SPeter Brune 36109a64c4a8SMatthew G. Knepley /*@ 3611bb7acecfSBarry Smith DMSetCoarsenLevel - Sets the number of coarsenings that have generated this `DM`. 36129a64c4a8SMatthew G. Knepley 361320f4b53cSBarry Smith Collective 36149a64c4a8SMatthew G. Knepley 36159a64c4a8SMatthew G. Knepley Input Parameters: 3616bb7acecfSBarry Smith + dm - the `DM` object 36179a64c4a8SMatthew G. Knepley - level - number of coarsenings 36189a64c4a8SMatthew G. Knepley 36199a64c4a8SMatthew G. Knepley Level: developer 36209a64c4a8SMatthew G. Knepley 3621bb7acecfSBarry Smith Note: 3622bb7acecfSBarry Smith This is rarely used directly, the information is automatically set when a `DM` is created with `DMCoarsen()` 3623bb7acecfSBarry Smith 362442747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 36259a64c4a8SMatthew G. Knepley @*/ 3626d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarsenLevel(DM dm, PetscInt level) 3627d71ae5a4SJacob Faibussowitsch { 36289a64c4a8SMatthew G. Knepley PetscFunctionBegin; 36299a64c4a8SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36309a64c4a8SMatthew G. Knepley dm->leveldown = level; 36313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36329a64c4a8SMatthew G. Knepley } 36339a64c4a8SMatthew G. Knepley 3634cc4c1da9SBarry Smith /*@ 3635bb7acecfSBarry Smith DMRefineHierarchy - Refines a `DM` object, all levels at once 363647c6ae99SBarry Smith 363720f4b53cSBarry Smith Collective 363847c6ae99SBarry Smith 3639d8d19677SJose E. Roman Input Parameters: 3640bb7acecfSBarry Smith + dm - the `DM` object 364147c6ae99SBarry Smith - nlevels - the number of levels of refinement 364247c6ae99SBarry Smith 364347c6ae99SBarry Smith Output Parameter: 3644bb7acecfSBarry Smith . dmf - the refined `DM` hierarchy 364547c6ae99SBarry Smith 364647c6ae99SBarry Smith Level: developer 364747c6ae99SBarry Smith 36481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMCoarsenHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 364947c6ae99SBarry Smith @*/ 3650d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHierarchy(DM dm, PetscInt nlevels, DM dmf[]) 3651d71ae5a4SJacob Faibussowitsch { 365247c6ae99SBarry Smith PetscFunctionBegin; 3653171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36547a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 36553ba16761SJacob Faibussowitsch if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS); 36564f572ea9SToby Isaac PetscAssertPointer(dmf, 3); 3657213acdd3SPierre Jolivet if (dm->ops->refine && !dm->ops->refinehierarchy) { 365847c6ae99SBarry Smith PetscInt i; 365947c6ae99SBarry Smith 36609566063dSJacob Faibussowitsch PetscCall(DMRefine(dm, PetscObjectComm((PetscObject)dm), &dmf[0])); 366148a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMRefine(dmf[i - 1], PetscObjectComm((PetscObject)dm), &dmf[i])); 3662213acdd3SPierre Jolivet } else PetscUseTypeMethod(dm, refinehierarchy, nlevels, dmf); 36633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 366447c6ae99SBarry Smith } 366547c6ae99SBarry Smith 3666cc4c1da9SBarry Smith /*@ 3667bb7acecfSBarry Smith DMCoarsenHierarchy - Coarsens a `DM` object, all levels at once 366847c6ae99SBarry Smith 366920f4b53cSBarry Smith Collective 367047c6ae99SBarry Smith 3671d8d19677SJose E. Roman Input Parameters: 3672bb7acecfSBarry Smith + dm - the `DM` object 367347c6ae99SBarry Smith - nlevels - the number of levels of coarsening 367447c6ae99SBarry Smith 367547c6ae99SBarry Smith Output Parameter: 3676bb7acecfSBarry Smith . dmc - the coarsened `DM` hierarchy 367747c6ae99SBarry Smith 367847c6ae99SBarry Smith Level: developer 367947c6ae99SBarry Smith 36801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMRefineHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 368147c6ae99SBarry Smith @*/ 3682d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHierarchy(DM dm, PetscInt nlevels, DM dmc[]) 3683d71ae5a4SJacob Faibussowitsch { 368447c6ae99SBarry Smith PetscFunctionBegin; 3685171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36867a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 36873ba16761SJacob Faibussowitsch if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS); 36884f572ea9SToby Isaac PetscAssertPointer(dmc, 3); 3689213acdd3SPierre Jolivet if (dm->ops->coarsen && !dm->ops->coarsenhierarchy) { 369047c6ae99SBarry Smith PetscInt i; 369147c6ae99SBarry Smith 36929566063dSJacob Faibussowitsch PetscCall(DMCoarsen(dm, PetscObjectComm((PetscObject)dm), &dmc[0])); 369348a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMCoarsen(dmc[i - 1], PetscObjectComm((PetscObject)dm), &dmc[i])); 3694213acdd3SPierre Jolivet } else PetscUseTypeMethod(dm, coarsenhierarchy, nlevels, dmc); 36953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 369647c6ae99SBarry Smith } 369747c6ae99SBarry Smith 36981a266240SBarry Smith /*@C 3699bb7acecfSBarry Smith DMSetApplicationContextDestroy - Sets a user function that will be called to destroy the application context when the `DM` is destroyed 37001a266240SBarry Smith 3701bb7acecfSBarry Smith Logically Collective if the function is collective 37021a266240SBarry Smith 37031a266240SBarry Smith Input Parameters: 3704bb7acecfSBarry Smith + dm - the `DM` object 370549abdd8aSBarry Smith - destroy - the destroy function, see `PetscCtxDestroyFn` for the calling sequence 37061a266240SBarry Smith 37071a266240SBarry Smith Level: intermediate 37081a266240SBarry Smith 370949abdd8aSBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, 371049abdd8aSBarry Smith `DMGetApplicationContext()`, `PetscCtxDestroyFn` 3711f07f9ceaSJed Brown @*/ 371249abdd8aSBarry Smith PetscErrorCode DMSetApplicationContextDestroy(DM dm, PetscCtxDestroyFn *destroy) 3713d71ae5a4SJacob Faibussowitsch { 37141a266240SBarry Smith PetscFunctionBegin; 3715171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37161a266240SBarry Smith dm->ctxdestroy = destroy; 37173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 37181a266240SBarry Smith } 37191a266240SBarry Smith 3720b07ff414SBarry Smith /*@ 3721bb7acecfSBarry Smith DMSetApplicationContext - Set a user context into a `DM` object 372247c6ae99SBarry Smith 372347c6ae99SBarry Smith Not Collective 372447c6ae99SBarry Smith 372547c6ae99SBarry Smith Input Parameters: 3726bb7acecfSBarry Smith + dm - the `DM` object 372747c6ae99SBarry Smith - ctx - the user context 372847c6ae99SBarry Smith 372947c6ae99SBarry Smith Level: intermediate 373047c6ae99SBarry Smith 3731e33b3f0fSStefano Zampini Notes: 373235cb6cd3SPierre Jolivet A user context is a way to pass problem specific information that is accessible whenever the `DM` is available 3733e33b3f0fSStefano Zampini In a multilevel solver, the user context is shared by all the `DM` in the hierarchy; it is thus not advisable 3734e33b3f0fSStefano Zampini to store objects that represent discretized quantities inside the context. 3735bb7acecfSBarry Smith 373660225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 373747c6ae99SBarry Smith @*/ 3738d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContext(DM dm, void *ctx) 3739d71ae5a4SJacob Faibussowitsch { 374047c6ae99SBarry Smith PetscFunctionBegin; 3741171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 374247c6ae99SBarry Smith dm->ctx = ctx; 37433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 374447c6ae99SBarry Smith } 374547c6ae99SBarry Smith 374647c6ae99SBarry Smith /*@ 3747bb7acecfSBarry Smith DMGetApplicationContext - Gets a user context from a `DM` object 374847c6ae99SBarry Smith 374947c6ae99SBarry Smith Not Collective 375047c6ae99SBarry Smith 375147c6ae99SBarry Smith Input Parameter: 3752bb7acecfSBarry Smith . dm - the `DM` object 375347c6ae99SBarry Smith 375447c6ae99SBarry Smith Output Parameter: 375547c6ae99SBarry Smith . ctx - the user context 375647c6ae99SBarry Smith 375747c6ae99SBarry Smith Level: intermediate 375847c6ae99SBarry Smith 3759bb7acecfSBarry Smith Note: 376035cb6cd3SPierre Jolivet A user context is a way to pass problem specific information that is accessible whenever the `DM` is available 3761bb7acecfSBarry Smith 376242747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 376347c6ae99SBarry Smith @*/ 3764d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetApplicationContext(DM dm, void *ctx) 3765d71ae5a4SJacob Faibussowitsch { 376647c6ae99SBarry Smith PetscFunctionBegin; 3767171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37681b2093e4SBarry Smith *(void **)ctx = dm->ctx; 37693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 377047c6ae99SBarry Smith } 377147c6ae99SBarry Smith 377208da532bSDmitry Karpeev /*@C 3773bb7acecfSBarry Smith DMSetVariableBounds - sets a function to compute the lower and upper bound vectors for `SNESVI`. 377408da532bSDmitry Karpeev 377520f4b53cSBarry Smith Logically Collective 377608da532bSDmitry Karpeev 3777d8d19677SJose E. Roman Input Parameters: 377808da532bSDmitry Karpeev + dm - the DM object 377920f4b53cSBarry Smith - f - the function that computes variable bounds used by SNESVI (use `NULL` to cancel a previous function that was set) 378008da532bSDmitry Karpeev 378108da532bSDmitry Karpeev Level: intermediate 378208da532bSDmitry Karpeev 37831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`, 3784db781477SPatrick Sanan `DMSetJacobian()` 378508da532bSDmitry Karpeev @*/ 3786d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVariableBounds(DM dm, PetscErrorCode (*f)(DM, Vec, Vec)) 3787d71ae5a4SJacob Faibussowitsch { 378808da532bSDmitry Karpeev PetscFunctionBegin; 37895a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 379008da532bSDmitry Karpeev dm->ops->computevariablebounds = f; 37913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 379208da532bSDmitry Karpeev } 379308da532bSDmitry Karpeev 379408da532bSDmitry Karpeev /*@ 3795bb7acecfSBarry Smith DMHasVariableBounds - does the `DM` object have a variable bounds function? 379608da532bSDmitry Karpeev 379708da532bSDmitry Karpeev Not Collective 379808da532bSDmitry Karpeev 379908da532bSDmitry Karpeev Input Parameter: 3800bb7acecfSBarry Smith . dm - the `DM` object to destroy 380108da532bSDmitry Karpeev 380208da532bSDmitry Karpeev Output Parameter: 3803bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the variable bounds function exists 380408da532bSDmitry Karpeev 380508da532bSDmitry Karpeev Level: developer 380608da532bSDmitry Karpeev 38071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 380808da532bSDmitry Karpeev @*/ 3809d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasVariableBounds(DM dm, PetscBool *flg) 3810d71ae5a4SJacob Faibussowitsch { 381108da532bSDmitry Karpeev PetscFunctionBegin; 38125a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38134f572ea9SToby Isaac PetscAssertPointer(flg, 2); 381408da532bSDmitry Karpeev *flg = (dm->ops->computevariablebounds) ? PETSC_TRUE : PETSC_FALSE; 38153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 381608da532bSDmitry Karpeev } 381708da532bSDmitry Karpeev 3818cc4c1da9SBarry Smith /*@ 3819bb7acecfSBarry Smith DMComputeVariableBounds - compute variable bounds used by `SNESVI`. 382008da532bSDmitry Karpeev 382120f4b53cSBarry Smith Logically Collective 382208da532bSDmitry Karpeev 3823f899ff85SJose E. Roman Input Parameter: 3824bb7acecfSBarry Smith . dm - the `DM` object 382508da532bSDmitry Karpeev 382660225df5SJacob Faibussowitsch Output Parameters: 382708da532bSDmitry Karpeev + xl - lower bound 382808da532bSDmitry Karpeev - xu - upper bound 382908da532bSDmitry Karpeev 3830907376e6SBarry Smith Level: advanced 3831907376e6SBarry Smith 383220f4b53cSBarry Smith Note: 383395452b02SPatrick Sanan This is generally not called by users. It calls the function provided by the user with DMSetVariableBounds() 383408da532bSDmitry Karpeev 38351cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 383608da532bSDmitry Karpeev @*/ 3837d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeVariableBounds(DM dm, Vec xl, Vec xu) 3838d71ae5a4SJacob Faibussowitsch { 383908da532bSDmitry Karpeev PetscFunctionBegin; 38405a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 384108da532bSDmitry Karpeev PetscValidHeaderSpecific(xl, VEC_CLASSID, 2); 38425a84ad33SLisandro Dalcin PetscValidHeaderSpecific(xu, VEC_CLASSID, 3); 3843dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, computevariablebounds, xl, xu); 38443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 384508da532bSDmitry Karpeev } 384608da532bSDmitry Karpeev 3847b0ae01b7SPeter Brune /*@ 3848bb7acecfSBarry Smith DMHasColoring - does the `DM` object have a method of providing a coloring? 3849b0ae01b7SPeter Brune 3850b0ae01b7SPeter Brune Not Collective 3851b0ae01b7SPeter Brune 3852b0ae01b7SPeter Brune Input Parameter: 3853b0ae01b7SPeter Brune . dm - the DM object 3854b0ae01b7SPeter Brune 3855b0ae01b7SPeter Brune Output Parameter: 3856bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateColoring()`. 3857b0ae01b7SPeter Brune 3858b0ae01b7SPeter Brune Level: developer 3859b0ae01b7SPeter Brune 38601cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateColoring()` 3861b0ae01b7SPeter Brune @*/ 3862d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasColoring(DM dm, PetscBool *flg) 3863d71ae5a4SJacob Faibussowitsch { 3864b0ae01b7SPeter Brune PetscFunctionBegin; 38655a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38664f572ea9SToby Isaac PetscAssertPointer(flg, 2); 3867b0ae01b7SPeter Brune *flg = (dm->ops->getcoloring) ? PETSC_TRUE : PETSC_FALSE; 38683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3869b0ae01b7SPeter Brune } 3870b0ae01b7SPeter Brune 38713ad4599aSBarry Smith /*@ 3872bb7acecfSBarry Smith DMHasCreateRestriction - does the `DM` object have a method of providing a restriction? 38733ad4599aSBarry Smith 38743ad4599aSBarry Smith Not Collective 38753ad4599aSBarry Smith 38763ad4599aSBarry Smith Input Parameter: 3877bb7acecfSBarry Smith . dm - the `DM` object 38783ad4599aSBarry Smith 38793ad4599aSBarry Smith Output Parameter: 3880bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateRestriction()`. 38813ad4599aSBarry Smith 38823ad4599aSBarry Smith Level: developer 38833ad4599aSBarry Smith 38841cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateRestriction()`, `DMHasCreateInterpolation()`, `DMHasCreateInjection()` 38853ad4599aSBarry Smith @*/ 3886d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateRestriction(DM dm, PetscBool *flg) 3887d71ae5a4SJacob Faibussowitsch { 38883ad4599aSBarry Smith PetscFunctionBegin; 38895a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38904f572ea9SToby Isaac PetscAssertPointer(flg, 2); 38913ad4599aSBarry Smith *flg = (dm->ops->createrestriction) ? PETSC_TRUE : PETSC_FALSE; 38923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 38933ad4599aSBarry Smith } 38943ad4599aSBarry Smith 3895a7058e45SLawrence Mitchell /*@ 3896bb7acecfSBarry Smith DMHasCreateInjection - does the `DM` object have a method of providing an injection? 3897a7058e45SLawrence Mitchell 3898a7058e45SLawrence Mitchell Not Collective 3899a7058e45SLawrence Mitchell 3900a7058e45SLawrence Mitchell Input Parameter: 3901bb7acecfSBarry Smith . dm - the `DM` object 3902a7058e45SLawrence Mitchell 3903a7058e45SLawrence Mitchell Output Parameter: 3904bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateInjection()`. 3905a7058e45SLawrence Mitchell 3906a7058e45SLawrence Mitchell Level: developer 3907a7058e45SLawrence Mitchell 39081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateInjection()`, `DMHasCreateRestriction()`, `DMHasCreateInterpolation()` 3909a7058e45SLawrence Mitchell @*/ 3910d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateInjection(DM dm, PetscBool *flg) 3911d71ae5a4SJacob Faibussowitsch { 3912a7058e45SLawrence Mitchell PetscFunctionBegin; 39135a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39144f572ea9SToby Isaac PetscAssertPointer(flg, 2); 3915dbbe0bcdSBarry Smith if (dm->ops->hascreateinjection) PetscUseTypeMethod(dm, hascreateinjection, flg); 3916ad540459SPierre Jolivet else *flg = (dm->ops->createinjection) ? PETSC_TRUE : PETSC_FALSE; 39173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3918a7058e45SLawrence Mitchell } 3919a7058e45SLawrence Mitchell 39200298fd71SBarry Smith PetscFunctionList DMList = NULL; 3921264ace61SBarry Smith PetscBool DMRegisterAllCalled = PETSC_FALSE; 3922264ace61SBarry Smith 3923cc4c1da9SBarry Smith /*@ 3924bb7acecfSBarry Smith DMSetType - Builds a `DM`, for a particular `DM` implementation. 3925264ace61SBarry Smith 392620f4b53cSBarry Smith Collective 3927264ace61SBarry Smith 3928264ace61SBarry Smith Input Parameters: 3929bb7acecfSBarry Smith + dm - The `DM` object 3930bb7acecfSBarry Smith - method - The name of the `DMType`, for example `DMDA`, `DMPLEX` 3931264ace61SBarry Smith 3932264ace61SBarry Smith Options Database Key: 3933bb7acecfSBarry Smith . -dm_type <type> - Sets the `DM` type; use -help for a list of available types 3934264ace61SBarry Smith 3935264ace61SBarry Smith Level: intermediate 3936264ace61SBarry Smith 3937bb7acecfSBarry Smith Note: 39380462cc06SPierre Jolivet Of the `DM` is constructed by directly calling a function to construct a particular `DM`, for example, `DMDACreate2d()` or `DMPlexCreateBoxMesh()` 3939bb7acecfSBarry Smith 39401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMGetType()`, `DMCreate()`, `DMDACreate2d()` 3941264ace61SBarry Smith @*/ 3942d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetType(DM dm, DMType method) 3943d71ae5a4SJacob Faibussowitsch { 3944264ace61SBarry Smith PetscErrorCode (*r)(DM); 3945264ace61SBarry Smith PetscBool match; 3946264ace61SBarry Smith 3947264ace61SBarry Smith PetscFunctionBegin; 3948264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39499566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, method, &match)); 39503ba16761SJacob Faibussowitsch if (match) PetscFunctionReturn(PETSC_SUCCESS); 3951264ace61SBarry Smith 39529566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 39539566063dSJacob Faibussowitsch PetscCall(PetscFunctionListFind(DMList, method, &r)); 39547a8be351SBarry Smith PetscCheck(r, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown DM type: %s", method); 3955264ace61SBarry Smith 3956dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, destroy); 39579566063dSJacob Faibussowitsch PetscCall(PetscMemzero(dm->ops, sizeof(*dm->ops))); 39589566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)dm, method)); 39599566063dSJacob Faibussowitsch PetscCall((*r)(dm)); 39603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3961264ace61SBarry Smith } 3962264ace61SBarry Smith 3963cc4c1da9SBarry Smith /*@ 3964bb7acecfSBarry Smith DMGetType - Gets the `DM` type name (as a string) from the `DM`. 3965264ace61SBarry Smith 3966264ace61SBarry Smith Not Collective 3967264ace61SBarry Smith 3968264ace61SBarry Smith Input Parameter: 3969bb7acecfSBarry Smith . dm - The `DM` 3970264ace61SBarry Smith 3971264ace61SBarry Smith Output Parameter: 3972bb7acecfSBarry Smith . type - The `DMType` name 3973264ace61SBarry Smith 3974264ace61SBarry Smith Level: intermediate 3975264ace61SBarry Smith 39761cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMSetType()`, `DMCreate()` 3977264ace61SBarry Smith @*/ 3978d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetType(DM dm, DMType *type) 3979d71ae5a4SJacob Faibussowitsch { 3980264ace61SBarry Smith PetscFunctionBegin; 3981264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39824f572ea9SToby Isaac PetscAssertPointer(type, 2); 39839566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 3984264ace61SBarry Smith *type = ((PetscObject)dm)->type_name; 39853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3986264ace61SBarry Smith } 3987264ace61SBarry Smith 39885d83a8b1SBarry Smith /*@ 3989bb7acecfSBarry Smith DMConvert - Converts a `DM` to another `DM`, either of the same or different type. 399067a56275SMatthew G Knepley 399120f4b53cSBarry Smith Collective 399267a56275SMatthew G Knepley 399367a56275SMatthew G Knepley Input Parameters: 3994bb7acecfSBarry Smith + dm - the `DM` 3995bb7acecfSBarry Smith - newtype - new `DM` type (use "same" for the same type) 399667a56275SMatthew G Knepley 399767a56275SMatthew G Knepley Output Parameter: 3998bb7acecfSBarry Smith . M - pointer to new `DM` 399967a56275SMatthew G Knepley 400020f4b53cSBarry Smith Level: intermediate 400120f4b53cSBarry Smith 400273ff1848SBarry Smith Note: 4003bb7acecfSBarry Smith Cannot be used to convert a sequential `DM` to a parallel or a parallel to sequential, 4004bb7acecfSBarry Smith the MPI communicator of the generated `DM` is always the same as the communicator 4005bb7acecfSBarry Smith of the input `DM`. 400667a56275SMatthew G Knepley 40071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMCreate()`, `DMClone()` 400867a56275SMatthew G Knepley @*/ 4009d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConvert(DM dm, DMType newtype, DM *M) 4010d71ae5a4SJacob Faibussowitsch { 401167a56275SMatthew G Knepley DM B; 401267a56275SMatthew G Knepley char convname[256]; 4013c067b6caSMatthew G. Knepley PetscBool sametype /*, issame */; 401467a56275SMatthew G Knepley 401567a56275SMatthew G Knepley PetscFunctionBegin; 401667a56275SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 401767a56275SMatthew G Knepley PetscValidType(dm, 1); 40184f572ea9SToby Isaac PetscAssertPointer(M, 3); 40199566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, newtype, &sametype)); 40209566063dSJacob Faibussowitsch /* PetscCall(PetscStrcmp(newtype, "same", &issame)); */ 4021c067b6caSMatthew G. Knepley if (sametype) { 4022c067b6caSMatthew G. Knepley *M = dm; 40239566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 40243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4025c067b6caSMatthew G. Knepley } else { 40260298fd71SBarry Smith PetscErrorCode (*conv)(DM, DMType, DM *) = NULL; 402767a56275SMatthew G Knepley 402867a56275SMatthew G Knepley /* 402967a56275SMatthew G Knepley Order of precedence: 403067a56275SMatthew G Knepley 1) See if a specialized converter is known to the current DM. 403167a56275SMatthew G Knepley 2) See if a specialized converter is known to the desired DM class. 403267a56275SMatthew G Knepley 3) See if a good general converter is registered for the desired class 403367a56275SMatthew G Knepley 4) See if a good general converter is known for the current matrix. 403467a56275SMatthew G Knepley 5) Use a really basic converter. 403567a56275SMatthew G Knepley */ 403667a56275SMatthew G Knepley 403767a56275SMatthew G Knepley /* 1) See if a specialized converter is known to the current DM and the desired class */ 40389566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 40399566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 40409566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 40419566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 40429566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 40439566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)dm, convname, &conv)); 404467a56275SMatthew G Knepley if (conv) goto foundconv; 404567a56275SMatthew G Knepley 404667a56275SMatthew G Knepley /* 2) See if a specialized converter is known to the desired DM class. */ 40479566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &B)); 40489566063dSJacob Faibussowitsch PetscCall(DMSetType(B, newtype)); 40499566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 40509566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 40519566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 40529566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 40539566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 40549566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)B, convname, &conv)); 405567a56275SMatthew G Knepley if (conv) { 40569566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 405767a56275SMatthew G Knepley goto foundconv; 405867a56275SMatthew G Knepley } 405967a56275SMatthew G Knepley 406067a56275SMatthew G Knepley #if 0 406167a56275SMatthew G Knepley /* 3) See if a good general converter is registered for the desired class */ 406267a56275SMatthew G Knepley conv = B->ops->convertfrom; 40639566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 406467a56275SMatthew G Knepley if (conv) goto foundconv; 406567a56275SMatthew G Knepley 406667a56275SMatthew G Knepley /* 4) See if a good general converter is known for the current matrix */ 406767a56275SMatthew G Knepley if (dm->ops->convert) { 406867a56275SMatthew G Knepley conv = dm->ops->convert; 406967a56275SMatthew G Knepley } 407067a56275SMatthew G Knepley if (conv) goto foundconv; 407167a56275SMatthew G Knepley #endif 407267a56275SMatthew G Knepley 407367a56275SMatthew G Knepley /* 5) Use a really basic converter. */ 407498921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No conversion possible between DM types %s and %s", ((PetscObject)dm)->type_name, newtype); 407567a56275SMatthew G Knepley 407667a56275SMatthew G Knepley foundconv: 40779566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Convert, dm, 0, 0, 0)); 40789566063dSJacob Faibussowitsch PetscCall((*conv)(dm, newtype, M)); 407912fa691eSMatthew G. Knepley /* Things that are independent of DM type: We should consult DMClone() here */ 408090b157c4SStefano Zampini { 40814fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 40826858538eSMatthew G. Knepley 40834fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 40844fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*M, maxCell, Lstart, L)); 4085c8a6034eSMark (*M)->prealloc_only = dm->prealloc_only; 40869566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->vectype)); 40879566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*M)->vectype)); 40889566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->mattype)); 40899566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*M)->mattype)); 409012fa691eSMatthew G. Knepley } 40919566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Convert, dm, 0, 0, 0)); 409267a56275SMatthew G Knepley } 40939566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)*M)); 40943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 409567a56275SMatthew G Knepley } 4096264ace61SBarry Smith 4097264ace61SBarry Smith /*--------------------------------------------------------------------------------------------------------------------*/ 4098264ace61SBarry Smith 4099264ace61SBarry Smith /*@C 4100bb7acecfSBarry Smith DMRegister - Adds a new `DM` type implementation 41011c84c290SBarry Smith 4102cc4c1da9SBarry Smith Not Collective, No Fortran Support 41031c84c290SBarry Smith 41041c84c290SBarry Smith Input Parameters: 410520f4b53cSBarry Smith + sname - The name of a new user-defined creation routine 410620f4b53cSBarry Smith - function - The creation routine itself 410720f4b53cSBarry Smith 410820f4b53cSBarry Smith Level: advanced 41091c84c290SBarry Smith 411073ff1848SBarry Smith Note: 411120f4b53cSBarry Smith `DMRegister()` may be called multiple times to add several user-defined `DM`s 41121c84c290SBarry Smith 411360225df5SJacob Faibussowitsch Example Usage: 41141c84c290SBarry Smith .vb 4115bdf89e91SBarry Smith DMRegister("my_da", MyDMCreate); 41161c84c290SBarry Smith .ve 41171c84c290SBarry Smith 411820f4b53cSBarry Smith Then, your `DM` type can be chosen with the procedural interface via 41191c84c290SBarry Smith .vb 41201c84c290SBarry Smith DMCreate(MPI_Comm, DM *); 41211c84c290SBarry Smith DMSetType(DM,"my_da"); 41221c84c290SBarry Smith .ve 41231c84c290SBarry Smith or at runtime via the option 41241c84c290SBarry Smith .vb 41251c84c290SBarry Smith -da_type my_da 41261c84c290SBarry Smith .ve 4127264ace61SBarry Smith 41281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMSetType()`, `DMRegisterAll()`, `DMRegisterDestroy()` 4129264ace61SBarry Smith @*/ 4130d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRegister(const char sname[], PetscErrorCode (*function)(DM)) 4131d71ae5a4SJacob Faibussowitsch { 4132264ace61SBarry Smith PetscFunctionBegin; 41339566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 41349566063dSJacob Faibussowitsch PetscCall(PetscFunctionListAdd(&DMList, sname, function)); 41353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4136264ace61SBarry Smith } 4137264ace61SBarry Smith 4138ffeef943SBarry Smith /*@ 4139bb7acecfSBarry Smith DMLoad - Loads a DM that has been stored in binary with `DMView()`. 4140b859378eSBarry Smith 414120f4b53cSBarry Smith Collective 4142b859378eSBarry Smith 4143b859378eSBarry Smith Input Parameters: 4144bb7acecfSBarry Smith + newdm - the newly loaded `DM`, this needs to have been created with `DMCreate()` or 4145bb7acecfSBarry Smith some related function before a call to `DMLoad()`. 4146bb7acecfSBarry Smith - viewer - binary file viewer, obtained from `PetscViewerBinaryOpen()` or 4147bb7acecfSBarry Smith `PETSCVIEWERHDF5` file viewer, obtained from `PetscViewerHDF5Open()` 4148b859378eSBarry Smith 4149b859378eSBarry Smith Level: intermediate 4150b859378eSBarry Smith 4151b859378eSBarry Smith Notes: 415255849f57SBarry Smith The type is determined by the data in the file, any type set into the DM before this call is ignored. 4153b859378eSBarry Smith 4154bb7acecfSBarry Smith Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` format, one can save multiple `DMPLEX` 4155bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 4156bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 4157cd7e8a5eSksagiyam 41581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewerBinaryOpen()`, `DMView()`, `MatLoad()`, `VecLoad()` 4159b859378eSBarry Smith @*/ 4160d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLoad(DM newdm, PetscViewer viewer) 4161d71ae5a4SJacob Faibussowitsch { 41629331c7a4SMatthew G. Knepley PetscBool isbinary, ishdf5; 4163b859378eSBarry Smith 4164b859378eSBarry Smith PetscFunctionBegin; 4165b859378eSBarry Smith PetscValidHeaderSpecific(newdm, DM_CLASSID, 1); 4166b859378eSBarry Smith PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 41679566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckReadable(viewer)); 41689566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 41699566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 41709566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Load, viewer, 0, 0, 0)); 41719331c7a4SMatthew G. Knepley if (isbinary) { 41729331c7a4SMatthew G. Knepley PetscInt classid; 41739331c7a4SMatthew G. Knepley char type[256]; 4174b859378eSBarry Smith 41759566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &classid, 1, NULL, PETSC_INT)); 4176835f2295SStefano Zampini PetscCheck(classid == DM_FILE_CLASSID, PetscObjectComm((PetscObject)newdm), PETSC_ERR_ARG_WRONG, "Not DM next in file, classid found %" PetscInt_FMT, classid); 41779566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, type, 256, NULL, PETSC_CHAR)); 41789566063dSJacob Faibussowitsch PetscCall(DMSetType(newdm, type)); 4179dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 41809331c7a4SMatthew G. Knepley } else if (ishdf5) { 4181dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 41829331c7a4SMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerBinaryOpen() or PetscViewerHDF5Open()"); 41839566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Load, viewer, 0, 0, 0)); 41843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4185b859378eSBarry Smith } 4186b859378eSBarry Smith 41874ee01570SBarry Smith /* FEM Support */ 41887da65231SMatthew G Knepley 41892ecf6ec3SMatthew G. Knepley PetscErrorCode DMPrintCellIndices(PetscInt c, const char name[], PetscInt len, const PetscInt x[]) 41902ecf6ec3SMatthew G. Knepley { 41912ecf6ec3SMatthew G. Knepley PetscInt f; 41922ecf6ec3SMatthew G. Knepley 41932ecf6ec3SMatthew G. Knepley PetscFunctionBegin; 41942ecf6ec3SMatthew G. Knepley PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 41952ecf6ec3SMatthew G. Knepley for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %" PetscInt_FMT " |\n", x[f])); 41962ecf6ec3SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 41972ecf6ec3SMatthew G. Knepley } 41982ecf6ec3SMatthew G. Knepley 4199d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellVector(PetscInt c, const char name[], PetscInt len, const PetscScalar x[]) 4200d71ae5a4SJacob Faibussowitsch { 42011d47ebbbSSatish Balay PetscInt f; 42021b30c384SMatthew G Knepley 42037da65231SMatthew G Knepley PetscFunctionBegin; 420463a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 420548a46eb9SPierre Jolivet for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %g |\n", (double)PetscRealPart(x[f]))); 42063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42077da65231SMatthew G Knepley } 42087da65231SMatthew G Knepley 42095962854dSMatthew G. Knepley PetscErrorCode DMPrintCellVectorReal(PetscInt c, const char name[], PetscInt len, const PetscReal x[]) 42105962854dSMatthew G. Knepley { 42115962854dSMatthew G. Knepley PetscInt f; 42125962854dSMatthew G. Knepley 42135962854dSMatthew G. Knepley PetscFunctionBegin; 42145962854dSMatthew G. Knepley PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 42155962854dSMatthew G. Knepley for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %g |\n", (double)x[f])); 42165962854dSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 42175962854dSMatthew G. Knepley } 42185962854dSMatthew G. Knepley 4219d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellMatrix(PetscInt c, const char name[], PetscInt rows, PetscInt cols, const PetscScalar A[]) 4220d71ae5a4SJacob Faibussowitsch { 42211b30c384SMatthew G Knepley PetscInt f, g; 42227da65231SMatthew G Knepley 42237da65231SMatthew G Knepley PetscFunctionBegin; 422463a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 42251d47ebbbSSatish Balay for (f = 0; f < rows; ++f) { 42269566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |")); 422748a46eb9SPierre Jolivet for (g = 0; g < cols; ++g) PetscCall(PetscPrintf(PETSC_COMM_SELF, " % 9.5g", (double)PetscRealPart(A[f * cols + g]))); 42289566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |\n")); 42297da65231SMatthew G Knepley } 42303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42317da65231SMatthew G Knepley } 4232e7c4fc90SDmitry Karpeev 4233d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintLocalVec(DM dm, const char name[], PetscReal tol, Vec X) 4234d71ae5a4SJacob Faibussowitsch { 42350c5b8624SToby Isaac PetscInt localSize, bs; 42360c5b8624SToby Isaac PetscMPIInt size; 42370c5b8624SToby Isaac Vec x, xglob; 42380c5b8624SToby Isaac const PetscScalar *xarray; 4239e759306cSMatthew G. Knepley 4240e759306cSMatthew G. Knepley PetscFunctionBegin; 42419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 42429566063dSJacob Faibussowitsch PetscCall(VecDuplicate(X, &x)); 42439566063dSJacob Faibussowitsch PetscCall(VecCopy(X, x)); 424493ec0da9SPierre Jolivet PetscCall(VecFilter(x, tol)); 42459566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "%s:\n", name)); 42460c5b8624SToby Isaac if (size > 1) { 42479566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(x, &localSize)); 42489566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xarray)); 42499566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize(x, &bs)); 42509566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)dm), bs, localSize, PETSC_DETERMINE, xarray, &xglob)); 42510c5b8624SToby Isaac } else { 42520c5b8624SToby Isaac xglob = x; 42530c5b8624SToby Isaac } 42549566063dSJacob Faibussowitsch PetscCall(VecView(xglob, PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)dm)))); 42550c5b8624SToby Isaac if (size > 1) { 42569566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xglob)); 42579566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xarray)); 42580c5b8624SToby Isaac } 42599566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 42603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4261e759306cSMatthew G. Knepley } 4262e759306cSMatthew G. Knepley 426388ed4aceSMatthew G Knepley /*@ 4264bb7acecfSBarry Smith DMGetLocalSection - Get the `PetscSection` encoding the local data layout for the `DM`. 426588ed4aceSMatthew G Knepley 426688ed4aceSMatthew G Knepley Input Parameter: 4267bb7acecfSBarry Smith . dm - The `DM` 426888ed4aceSMatthew G Knepley 426988ed4aceSMatthew G Knepley Output Parameter: 4270bb7acecfSBarry Smith . section - The `PetscSection` 427188ed4aceSMatthew G Knepley 427220f4b53cSBarry Smith Options Database Key: 4273bb7acecfSBarry Smith . -dm_petscsection_view - View the section created by the `DM` 4274e5893cccSMatthew G. Knepley 427588ed4aceSMatthew G Knepley Level: intermediate 427688ed4aceSMatthew G Knepley 4277bb7acecfSBarry Smith Note: 4278bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 427988ed4aceSMatthew G Knepley 42801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetGlobalSection()` 428188ed4aceSMatthew G Knepley @*/ 4282d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalSection(DM dm, PetscSection *section) 4283d71ae5a4SJacob Faibussowitsch { 428488ed4aceSMatthew G Knepley PetscFunctionBegin; 428588ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 42864f572ea9SToby Isaac PetscAssertPointer(section, 2); 42871bb6d2a8SBarry Smith if (!dm->localSection && dm->ops->createlocalsection) { 4288e5e52638SMatthew G. Knepley PetscInt d; 4289e5e52638SMatthew G. Knepley 429045480ffeSMatthew G. Knepley if (dm->setfromoptionscalled) { 429145480ffeSMatthew G. Knepley PetscObject obj = (PetscObject)dm; 429245480ffeSMatthew G. Knepley PetscViewer viewer; 429345480ffeSMatthew G. Knepley PetscViewerFormat format; 429445480ffeSMatthew G. Knepley PetscBool flg; 429545480ffeSMatthew G. Knepley 4296648c30bcSBarry Smith PetscCall(PetscOptionsCreateViewer(PetscObjectComm(obj), obj->options, obj->prefix, "-dm_petscds_view", &viewer, &format, &flg)); 42979566063dSJacob Faibussowitsch if (flg) PetscCall(PetscViewerPushFormat(viewer, format)); 429845480ffeSMatthew G. Knepley for (d = 0; d < dm->Nds; ++d) { 42999566063dSJacob Faibussowitsch PetscCall(PetscDSSetFromOptions(dm->probs[d].ds)); 43009566063dSJacob Faibussowitsch if (flg) PetscCall(PetscDSView(dm->probs[d].ds, viewer)); 430145480ffeSMatthew G. Knepley } 430245480ffeSMatthew G. Knepley if (flg) { 43039566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 43049566063dSJacob Faibussowitsch PetscCall(PetscViewerPopFormat(viewer)); 4305648c30bcSBarry Smith PetscCall(PetscViewerDestroy(&viewer)); 430645480ffeSMatthew G. Knepley } 430745480ffeSMatthew G. Knepley } 4308dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalsection); 43099566063dSJacob Faibussowitsch if (dm->localSection) PetscCall(PetscObjectViewFromOptions((PetscObject)dm->localSection, NULL, "-dm_petscsection_view")); 43102f0f8703SMatthew G. Knepley } 43111bb6d2a8SBarry Smith *section = dm->localSection; 43123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 431388ed4aceSMatthew G Knepley } 431488ed4aceSMatthew G Knepley 431588ed4aceSMatthew G Knepley /*@ 4316bb7acecfSBarry Smith DMSetLocalSection - Set the `PetscSection` encoding the local data layout for the `DM`. 431788ed4aceSMatthew G Knepley 431888ed4aceSMatthew G Knepley Input Parameters: 4319bb7acecfSBarry Smith + dm - The `DM` 4320bb7acecfSBarry Smith - section - The `PetscSection` 432188ed4aceSMatthew G Knepley 432288ed4aceSMatthew G Knepley Level: intermediate 432388ed4aceSMatthew G Knepley 4324bb7acecfSBarry Smith Note: 4325bb7acecfSBarry Smith Any existing Section will be destroyed 432688ed4aceSMatthew G Knepley 43271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMSetGlobalSection()` 432888ed4aceSMatthew G Knepley @*/ 4329d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLocalSection(DM dm, PetscSection section) 4330d71ae5a4SJacob Faibussowitsch { 4331c473ab19SMatthew G. Knepley PetscInt numFields = 0; 4332af122d2aSMatthew G Knepley PetscInt f; 433388ed4aceSMatthew G Knepley 433488ed4aceSMatthew G Knepley PetscFunctionBegin; 433588ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4336b9d85ea2SLisandro Dalcin if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 43379566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 43389566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->localSection)); 43391bb6d2a8SBarry Smith dm->localSection = section; 43409566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(dm->localSection, &numFields)); 4341af122d2aSMatthew G Knepley if (numFields) { 43429566063dSJacob Faibussowitsch PetscCall(DMSetNumFields(dm, numFields)); 4343af122d2aSMatthew G Knepley for (f = 0; f < numFields; ++f) { 43440f21e855SMatthew G. Knepley PetscObject disc; 4345af122d2aSMatthew G Knepley const char *name; 4346af122d2aSMatthew G Knepley 43479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(dm->localSection, f, &name)); 43489566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &disc)); 43499566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName(disc, name)); 4350af122d2aSMatthew G Knepley } 4351af122d2aSMatthew G Knepley } 435250350c8eSStefano Zampini /* The global section and the SectionSF will be rebuilt 435350350c8eSStefano Zampini in the next call to DMGetGlobalSection() and DMGetSectionSF(). */ 43549566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 435550350c8eSStefano Zampini PetscCall(PetscSFDestroy(&dm->sectionSF)); 435652947b74SStefano Zampini PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 435750350c8eSStefano Zampini 435850350c8eSStefano Zampini /* Clear scratch vectors */ 435950350c8eSStefano Zampini PetscCall(DMClearGlobalVectors(dm)); 436050350c8eSStefano Zampini PetscCall(DMClearLocalVectors(dm)); 436150350c8eSStefano Zampini PetscCall(DMClearNamedGlobalVectors(dm)); 436250350c8eSStefano Zampini PetscCall(DMClearNamedLocalVectors(dm)); 43633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 436488ed4aceSMatthew G Knepley } 436588ed4aceSMatthew G Knepley 4366adc21957SMatthew G. Knepley /*@C 4367d8b4a066SPierre Jolivet DMCreateSectionPermutation - Create a permutation of the `PetscSection` chart and optionally a block structure. 4368adc21957SMatthew G. Knepley 4369adc21957SMatthew G. Knepley Input Parameter: 4370adc21957SMatthew G. Knepley . dm - The `DM` 4371adc21957SMatthew G. Knepley 43729cde84edSJose E. Roman Output Parameters: 4373adc21957SMatthew G. Knepley + perm - A permutation of the mesh points in the chart 4374b6971eaeSBarry Smith - blockStarts - A high bit is set for the point that begins every block, or `NULL` for default blocking 4375adc21957SMatthew G. Knepley 4376adc21957SMatthew G. Knepley Level: developer 4377adc21957SMatthew G. Knepley 4378adc21957SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMGetGlobalSection()` 4379adc21957SMatthew G. Knepley @*/ 4380adc21957SMatthew G. Knepley PetscErrorCode DMCreateSectionPermutation(DM dm, IS *perm, PetscBT *blockStarts) 4381adc21957SMatthew G. Knepley { 4382adc21957SMatthew G. Knepley PetscFunctionBegin; 4383adc21957SMatthew G. Knepley *perm = NULL; 4384adc21957SMatthew G. Knepley *blockStarts = NULL; 4385adc21957SMatthew G. Knepley PetscTryTypeMethod(dm, createsectionpermutation, perm, blockStarts); 4386adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 4387adc21957SMatthew G. Knepley } 4388adc21957SMatthew G. Knepley 43899435951eSToby Isaac /*@ 4390bb7acecfSBarry Smith DMGetDefaultConstraints - Get the `PetscSection` and `Mat` that specify the local constraint interpolation. See `DMSetDefaultConstraints()` for a description of the purpose of constraint interpolation. 43919435951eSToby Isaac 439220f4b53cSBarry Smith not Collective 4393e228b242SToby Isaac 43949435951eSToby Isaac Input Parameter: 4395bb7acecfSBarry Smith . dm - The `DM` 43969435951eSToby Isaac 4397d8d19677SJose E. Roman Output Parameters: 439820f4b53cSBarry Smith + section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Returns `NULL` if there are no local constraints. 439920f4b53cSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section. Returns `NULL` if there are no local constraints. 440079769bd5SJed Brown - bias - Vector containing bias to be added to constrained dofs 44019435951eSToby Isaac 44029435951eSToby Isaac Level: advanced 44039435951eSToby Isaac 4404bb7acecfSBarry Smith Note: 4405bb7acecfSBarry Smith This gets borrowed references, so the user should not destroy the `PetscSection`, `Mat`, or `Vec`. 44069435951eSToby Isaac 44071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDefaultConstraints()` 44089435951eSToby Isaac @*/ 4409d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDefaultConstraints(DM dm, PetscSection *section, Mat *mat, Vec *bias) 4410d71ae5a4SJacob Faibussowitsch { 44119435951eSToby Isaac PetscFunctionBegin; 44129435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4413dbbe0bcdSBarry Smith if (!dm->defaultConstraint.section && !dm->defaultConstraint.mat && dm->ops->createdefaultconstraints) PetscUseTypeMethod(dm, createdefaultconstraints); 44143b8ba7d1SJed Brown if (section) *section = dm->defaultConstraint.section; 44153b8ba7d1SJed Brown if (mat) *mat = dm->defaultConstraint.mat; 441679769bd5SJed Brown if (bias) *bias = dm->defaultConstraint.bias; 44173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44189435951eSToby Isaac } 44199435951eSToby Isaac 44209435951eSToby Isaac /*@ 4421bb7acecfSBarry Smith DMSetDefaultConstraints - Set the `PetscSection` and `Mat` that specify the local constraint interpolation. 44229435951eSToby Isaac 442320f4b53cSBarry Smith Collective 4424e228b242SToby Isaac 44259435951eSToby Isaac Input Parameters: 4426bb7acecfSBarry Smith + dm - The `DM` 4427bb7acecfSBarry Smith . section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 442820f4b53cSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section: `NULL` indicates no constraints. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 442920f4b53cSBarry Smith - bias - A bias vector to be added to constrained values in the local vector. `NULL` indicates no bias. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 44309435951eSToby Isaac 44319435951eSToby Isaac Level: advanced 44329435951eSToby Isaac 443320f4b53cSBarry Smith Notes: 443420f4b53cSBarry Smith If a constraint matrix is specified, then it is applied during `DMGlobalToLocalEnd()` when mode is `INSERT_VALUES`, `INSERT_BC_VALUES`, or `INSERT_ALL_VALUES`. Without a constraint matrix, the local vector l returned by `DMGlobalToLocalEnd()` contains values that have been scattered from a global vector without modification; with a constraint matrix A, l is modified by computing c = A * l + bias, l[s[i]] = c[i], where the scatter s is defined by the `PetscSection` returned by `DMGetDefaultConstraints()`. 443520f4b53cSBarry Smith 443620f4b53cSBarry Smith If a constraint matrix is specified, then its adjoint is applied during `DMLocalToGlobalBegin()` when mode is `ADD_VALUES`, `ADD_BC_VALUES`, or `ADD_ALL_VALUES`. Without a constraint matrix, the local vector l is accumulated into a global vector without modification; with a constraint matrix A, l is first modified by computing c[i] = l[s[i]], l[s[i]] = 0, l = l + A'*c, which is the adjoint of the operation described above. Any bias, if specified, is ignored when accumulating. 443720f4b53cSBarry Smith 4438bb7acecfSBarry Smith This increments the references of the `PetscSection`, `Mat`, and `Vec`, so they user can destroy them. 44399435951eSToby Isaac 44401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDefaultConstraints()` 44419435951eSToby Isaac @*/ 4442d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDefaultConstraints(DM dm, PetscSection section, Mat mat, Vec bias) 4443d71ae5a4SJacob Faibussowitsch { 4444e228b242SToby Isaac PetscMPIInt result; 44459435951eSToby Isaac 44469435951eSToby Isaac PetscFunctionBegin; 44479435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4448e228b242SToby Isaac if (section) { 4449e228b242SToby Isaac PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 44509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)section), &result)); 44517a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint section must have local communicator"); 4452e228b242SToby Isaac } 4453e228b242SToby Isaac if (mat) { 4454e228b242SToby Isaac PetscValidHeaderSpecific(mat, MAT_CLASSID, 3); 44559566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)mat), &result)); 44567a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint matrix must have local communicator"); 4457e228b242SToby Isaac } 445879769bd5SJed Brown if (bias) { 445979769bd5SJed Brown PetscValidHeaderSpecific(bias, VEC_CLASSID, 4); 44609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)bias), &result)); 446179769bd5SJed Brown PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint bias must have local communicator"); 446279769bd5SJed Brown } 44639566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 44649566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->defaultConstraint.section)); 44653b8ba7d1SJed Brown dm->defaultConstraint.section = section; 44669566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mat)); 44679566063dSJacob Faibussowitsch PetscCall(MatDestroy(&dm->defaultConstraint.mat)); 44683b8ba7d1SJed Brown dm->defaultConstraint.mat = mat; 44699566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)bias)); 44709566063dSJacob Faibussowitsch PetscCall(VecDestroy(&dm->defaultConstraint.bias)); 447179769bd5SJed Brown dm->defaultConstraint.bias = bias; 44723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44739435951eSToby Isaac } 44749435951eSToby Isaac 4475497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 4476507e4973SMatthew G. Knepley /* 4477bb7acecfSBarry Smith DMDefaultSectionCheckConsistency - Check the consistentcy of the global and local sections. Generates and error if they are not consistent. 4478507e4973SMatthew G. Knepley 4479507e4973SMatthew G. Knepley Input Parameters: 4480bb7acecfSBarry Smith + dm - The `DM` 4481bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4482bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 4483507e4973SMatthew G. Knepley 4484507e4973SMatthew G. Knepley Level: intermediate 4485507e4973SMatthew G. Knepley 44861cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()` 4487507e4973SMatthew G. Knepley */ 4488d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(DM dm, PetscSection localSection, PetscSection globalSection) 4489d71ae5a4SJacob Faibussowitsch { 4490507e4973SMatthew G. Knepley MPI_Comm comm; 4491507e4973SMatthew G. Knepley PetscLayout layout; 4492507e4973SMatthew G. Knepley const PetscInt *ranges; 4493507e4973SMatthew G. Knepley PetscInt pStart, pEnd, p, nroots; 4494507e4973SMatthew G. Knepley PetscMPIInt size, rank; 4495507e4973SMatthew G. Knepley PetscBool valid = PETSC_TRUE, gvalid; 4496507e4973SMatthew G. Knepley 4497507e4973SMatthew G. Knepley PetscFunctionBegin; 44989566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 4499507e4973SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45009566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 45019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 45029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(globalSection, &pStart, &pEnd)); 45039566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &nroots)); 45049566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &layout)); 45059566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(layout, 1)); 45069566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(layout, nroots)); 45079566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(layout)); 45089566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(layout, &ranges)); 4509507e4973SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 4510f741bcd2SMatthew G. Knepley PetscInt dof, cdof, off, gdof, gcdof, goff, gsize, d; 4511507e4973SMatthew G. Knepley 45129566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(localSection, p, &dof)); 45139566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(localSection, p, &off)); 45149566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(localSection, p, &cdof)); 45159566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(globalSection, p, &gdof)); 45169566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(globalSection, p, &gcdof)); 45179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalSection, p, &goff)); 4518507e4973SMatthew G. Knepley if (!gdof) continue; /* Censored point */ 45199371c9d4SSatish Balay if ((gdof < 0 ? -(gdof + 1) : gdof) != dof) { 45209371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local dof %" PetscInt_FMT "\n", rank, gdof, p, dof)); 45219371c9d4SSatish Balay valid = PETSC_FALSE; 45229371c9d4SSatish Balay } 45239371c9d4SSatish Balay if (gcdof && (gcdof != cdof)) { 45249371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global constraints %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local constraints %" PetscInt_FMT "\n", rank, gcdof, p, cdof)); 45259371c9d4SSatish Balay valid = PETSC_FALSE; 45269371c9d4SSatish Balay } 4527507e4973SMatthew G. Knepley if (gdof < 0) { 4528507e4973SMatthew G. Knepley gsize = gdof < 0 ? -(gdof + 1) - gcdof : gdof - gcdof; 4529507e4973SMatthew G. Knepley for (d = 0; d < gsize; ++d) { 4530507e4973SMatthew G. Knepley PetscInt offset = -(goff + 1) + d, r; 4531507e4973SMatthew G. Knepley 45329566063dSJacob Faibussowitsch PetscCall(PetscFindInt(offset, size + 1, ranges, &r)); 4533507e4973SMatthew G. Knepley if (r < 0) r = -(r + 2); 45349371c9d4SSatish Balay if ((r < 0) || (r >= size)) { 45359371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Point %" PetscInt_FMT " mapped to invalid process %" PetscInt_FMT " (%" PetscInt_FMT ", %" PetscInt_FMT ")\n", rank, p, r, gdof, goff)); 45369371c9d4SSatish Balay valid = PETSC_FALSE; 45379371c9d4SSatish Balay break; 45389371c9d4SSatish Balay } 4539507e4973SMatthew G. Knepley } 4540507e4973SMatthew G. Knepley } 4541507e4973SMatthew G. Knepley } 45429566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&layout)); 45439566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, NULL)); 4544462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&valid, &gvalid, 1, MPIU_BOOL, MPI_LAND, comm)); 4545507e4973SMatthew G. Knepley if (!gvalid) { 45469566063dSJacob Faibussowitsch PetscCall(DMView(dm, NULL)); 4547507e4973SMatthew G. Knepley SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Inconsistent local and global sections"); 4548507e4973SMatthew G. Knepley } 45493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4550507e4973SMatthew G. Knepley } 4551f741bcd2SMatthew G. Knepley #endif 4552507e4973SMatthew G. Knepley 455390df3356SJames Wright PetscErrorCode DMGetIsoperiodicPointSF_Internal(DM dm, PetscSF *sf) 45546725e60dSJed Brown { 45556725e60dSJed Brown PetscErrorCode (*f)(DM, PetscSF *); 45564d86920dSPierre Jolivet 45576725e60dSJed Brown PetscFunctionBegin; 45586725e60dSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45594f572ea9SToby Isaac PetscAssertPointer(sf, 2); 45605f06a3ddSJed Brown PetscCall(PetscObjectQueryFunction((PetscObject)dm, "DMGetIsoperiodicPointSF_C", &f)); 45616725e60dSJed Brown if (f) PetscCall(f(dm, sf)); 45626725e60dSJed Brown else *sf = dm->sf; 45633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 45646725e60dSJed Brown } 45656725e60dSJed Brown 456688ed4aceSMatthew G Knepley /*@ 4567bb7acecfSBarry Smith DMGetGlobalSection - Get the `PetscSection` encoding the global data layout for the `DM`. 456888ed4aceSMatthew G Knepley 456920f4b53cSBarry Smith Collective 45708b1ab98fSJed Brown 457188ed4aceSMatthew G Knepley Input Parameter: 4572bb7acecfSBarry Smith . dm - The `DM` 457388ed4aceSMatthew G Knepley 457488ed4aceSMatthew G Knepley Output Parameter: 4575bb7acecfSBarry Smith . section - The `PetscSection` 457688ed4aceSMatthew G Knepley 457788ed4aceSMatthew G Knepley Level: intermediate 457888ed4aceSMatthew G Knepley 4579bb7acecfSBarry Smith Note: 4580bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 458188ed4aceSMatthew G Knepley 45821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()` 458388ed4aceSMatthew G Knepley @*/ 4584d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetGlobalSection(DM dm, PetscSection *section) 4585d71ae5a4SJacob Faibussowitsch { 458688ed4aceSMatthew G Knepley PetscFunctionBegin; 458788ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45884f572ea9SToby Isaac PetscAssertPointer(section, 2); 45891bb6d2a8SBarry Smith if (!dm->globalSection) { 4590fd59a867SMatthew G. Knepley PetscSection s; 45916725e60dSJed Brown PetscSF sf; 4592fd59a867SMatthew G. Knepley 45939566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 45947a8be351SBarry Smith PetscCheck(s, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a default PetscSection in order to create a global PetscSection"); 45957a8be351SBarry Smith PetscCheck(dm->sf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a point PetscSF in order to create a global PetscSection"); 45965f06a3ddSJed Brown PetscCall(DMGetIsoperiodicPointSF_Internal(dm, &sf)); 4597eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionCreateGlobalSection(s, sf, PETSC_TRUE, PETSC_FALSE, PETSC_FALSE, &dm->globalSection)); 45989566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&dm->map)); 45999566063dSJacob Faibussowitsch PetscCall(PetscSectionGetValueLayout(PetscObjectComm((PetscObject)dm), dm->globalSection, &dm->map)); 46009566063dSJacob Faibussowitsch PetscCall(PetscSectionViewFromOptions(dm->globalSection, NULL, "-global_section_view")); 460188ed4aceSMatthew G Knepley } 46021bb6d2a8SBarry Smith *section = dm->globalSection; 46033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 460488ed4aceSMatthew G Knepley } 460588ed4aceSMatthew G Knepley 4606b21d0597SMatthew G Knepley /*@ 4607bb7acecfSBarry Smith DMSetGlobalSection - Set the `PetscSection` encoding the global data layout for the `DM`. 4608b21d0597SMatthew G Knepley 4609b21d0597SMatthew G Knepley Input Parameters: 4610bb7acecfSBarry Smith + dm - The `DM` 46112fe279fdSBarry Smith - section - The PetscSection, or `NULL` 4612b21d0597SMatthew G Knepley 4613b21d0597SMatthew G Knepley Level: intermediate 4614b21d0597SMatthew G Knepley 4615bb7acecfSBarry Smith Note: 4616bb7acecfSBarry Smith Any existing `PetscSection` will be destroyed 4617b21d0597SMatthew G Knepley 46181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetGlobalSection()`, `DMSetLocalSection()` 4619b21d0597SMatthew G Knepley @*/ 4620d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetGlobalSection(DM dm, PetscSection section) 4621d71ae5a4SJacob Faibussowitsch { 4622b21d0597SMatthew G Knepley PetscFunctionBegin; 4623b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46245080bbdbSMatthew G Knepley if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 46259566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 46269566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 46271bb6d2a8SBarry Smith dm->globalSection = section; 4628497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 46299566063dSJacob Faibussowitsch if (section) PetscCall(DMDefaultSectionCheckConsistency_Internal(dm, dm->localSection, section)); 4630507e4973SMatthew G. Knepley #endif 463150350c8eSStefano Zampini /* Clear global scratch vectors and sectionSF */ 463250350c8eSStefano Zampini PetscCall(PetscSFDestroy(&dm->sectionSF)); 463352947b74SStefano Zampini PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 463450350c8eSStefano Zampini PetscCall(DMClearGlobalVectors(dm)); 463550350c8eSStefano Zampini PetscCall(DMClearNamedGlobalVectors(dm)); 46363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4637b21d0597SMatthew G Knepley } 4638b21d0597SMatthew G Knepley 463988ed4aceSMatthew G Knepley /*@ 4640bb7acecfSBarry Smith DMGetSectionSF - Get the `PetscSF` encoding the parallel dof overlap for the `DM`. If it has not been set, 4641bb7acecfSBarry Smith it is created from the default `PetscSection` layouts in the `DM`. 464288ed4aceSMatthew G Knepley 464388ed4aceSMatthew G Knepley Input Parameter: 4644bb7acecfSBarry Smith . dm - The `DM` 464588ed4aceSMatthew G Knepley 464688ed4aceSMatthew G Knepley Output Parameter: 4647bb7acecfSBarry Smith . sf - The `PetscSF` 464888ed4aceSMatthew G Knepley 464988ed4aceSMatthew G Knepley Level: intermediate 465088ed4aceSMatthew G Knepley 4651bb7acecfSBarry Smith Note: 4652bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 465388ed4aceSMatthew G Knepley 46541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetSectionSF()`, `DMCreateSectionSF()` 465588ed4aceSMatthew G Knepley @*/ 4656d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSectionSF(DM dm, PetscSF *sf) 4657d71ae5a4SJacob Faibussowitsch { 465888ed4aceSMatthew G Knepley PetscInt nroots; 465988ed4aceSMatthew G Knepley 466088ed4aceSMatthew G Knepley PetscFunctionBegin; 466188ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46624f572ea9SToby Isaac PetscAssertPointer(sf, 2); 466348a46eb9SPierre Jolivet if (!dm->sectionSF) PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 46649566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sectionSF, &nroots, NULL, NULL, NULL)); 466588ed4aceSMatthew G Knepley if (nroots < 0) { 466688ed4aceSMatthew G Knepley PetscSection section, gSection; 466788ed4aceSMatthew G Knepley 46689566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 466931ea6d37SMatthew G Knepley if (section) { 46709566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gSection)); 46719566063dSJacob Faibussowitsch PetscCall(DMCreateSectionSF(dm, section, gSection)); 467231ea6d37SMatthew G Knepley } else { 46730298fd71SBarry Smith *sf = NULL; 46743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 467531ea6d37SMatthew G Knepley } 467688ed4aceSMatthew G Knepley } 46771bb6d2a8SBarry Smith *sf = dm->sectionSF; 46783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 467988ed4aceSMatthew G Knepley } 468088ed4aceSMatthew G Knepley 468188ed4aceSMatthew G Knepley /*@ 4682bb7acecfSBarry Smith DMSetSectionSF - Set the `PetscSF` encoding the parallel dof overlap for the `DM` 468388ed4aceSMatthew G Knepley 468488ed4aceSMatthew G Knepley Input Parameters: 4685bb7acecfSBarry Smith + dm - The `DM` 4686bb7acecfSBarry Smith - sf - The `PetscSF` 468788ed4aceSMatthew G Knepley 468888ed4aceSMatthew G Knepley Level: intermediate 468988ed4aceSMatthew G Knepley 4690bb7acecfSBarry Smith Note: 4691bb7acecfSBarry Smith Any previous `PetscSF` is destroyed 469288ed4aceSMatthew G Knepley 46931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMCreateSectionSF()` 469488ed4aceSMatthew G Knepley @*/ 4695d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSectionSF(DM dm, PetscSF sf) 4696d71ae5a4SJacob Faibussowitsch { 469788ed4aceSMatthew G Knepley PetscFunctionBegin; 469888ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4699b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 47009566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 47019566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sectionSF)); 47021bb6d2a8SBarry Smith dm->sectionSF = sf; 47033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 470488ed4aceSMatthew G Knepley } 470588ed4aceSMatthew G Knepley 4706cc4c1da9SBarry Smith /*@ 4707bb7acecfSBarry Smith DMCreateSectionSF - Create the `PetscSF` encoding the parallel dof overlap for the `DM` based upon the `PetscSection`s 470888ed4aceSMatthew G Knepley describing the data layout. 470988ed4aceSMatthew G Knepley 471088ed4aceSMatthew G Knepley Input Parameters: 4711bb7acecfSBarry Smith + dm - The `DM` 4712bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4713bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 471488ed4aceSMatthew G Knepley 47151bb6d2a8SBarry Smith Level: developer 47161bb6d2a8SBarry Smith 4717bb7acecfSBarry Smith Note: 4718bb7acecfSBarry Smith One usually uses `DMGetSectionSF()` to obtain the `PetscSF` 4719bb7acecfSBarry Smith 472073ff1848SBarry Smith Developer Note: 4721bb7acecfSBarry Smith Since this routine has for arguments the two sections from the `DM` and puts the resulting `PetscSF` 4722bb7acecfSBarry Smith directly into the `DM`, perhaps this function should not take the local and global sections as 4723b6971eaeSBarry Smith input and should just obtain them from the `DM`? Plus PETSc creation functions return the thing 4724b6971eaeSBarry Smith they create, this returns nothing 47251bb6d2a8SBarry Smith 47261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMGetLocalSection()`, `DMGetGlobalSection()` 472788ed4aceSMatthew G Knepley @*/ 4728d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSectionSF(DM dm, PetscSection localSection, PetscSection globalSection) 4729d71ae5a4SJacob Faibussowitsch { 473088ed4aceSMatthew G Knepley PetscFunctionBegin; 473188ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47329566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphSection(dm->sectionSF, localSection, globalSection)); 47333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 473488ed4aceSMatthew G Knepley } 4735af122d2aSMatthew G Knepley 4736b21d0597SMatthew G Knepley /*@ 4737bb7acecfSBarry Smith DMGetPointSF - Get the `PetscSF` encoding the parallel section point overlap for the `DM`. 4738bb7acecfSBarry Smith 4739bb7acecfSBarry Smith Not collective but the resulting `PetscSF` is collective 4740b21d0597SMatthew G Knepley 4741b21d0597SMatthew G Knepley Input Parameter: 4742bb7acecfSBarry Smith . dm - The `DM` 4743b21d0597SMatthew G Knepley 4744b21d0597SMatthew G Knepley Output Parameter: 4745bb7acecfSBarry Smith . sf - The `PetscSF` 4746b21d0597SMatthew G Knepley 4747b21d0597SMatthew G Knepley Level: intermediate 4748b21d0597SMatthew G Knepley 4749bb7acecfSBarry Smith Note: 4750bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 4751b21d0597SMatthew G Knepley 47521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4753b21d0597SMatthew G Knepley @*/ 4754d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetPointSF(DM dm, PetscSF *sf) 4755d71ae5a4SJacob Faibussowitsch { 4756b21d0597SMatthew G Knepley PetscFunctionBegin; 4757b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47584f572ea9SToby Isaac PetscAssertPointer(sf, 2); 4759b21d0597SMatthew G Knepley *sf = dm->sf; 47603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4761b21d0597SMatthew G Knepley } 4762b21d0597SMatthew G Knepley 4763057b4bcdSMatthew G Knepley /*@ 4764bb7acecfSBarry Smith DMSetPointSF - Set the `PetscSF` encoding the parallel section point overlap for the `DM`. 4765bb7acecfSBarry Smith 476620f4b53cSBarry Smith Collective 4767057b4bcdSMatthew G Knepley 4768057b4bcdSMatthew G Knepley Input Parameters: 4769bb7acecfSBarry Smith + dm - The `DM` 4770bb7acecfSBarry Smith - sf - The `PetscSF` 4771057b4bcdSMatthew G Knepley 4772057b4bcdSMatthew G Knepley Level: intermediate 4773057b4bcdSMatthew G Knepley 47741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4775057b4bcdSMatthew G Knepley @*/ 4776d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetPointSF(DM dm, PetscSF sf) 4777d71ae5a4SJacob Faibussowitsch { 4778057b4bcdSMatthew G Knepley PetscFunctionBegin; 4779057b4bcdSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4780b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 47819566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 47829566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sf)); 4783057b4bcdSMatthew G Knepley dm->sf = sf; 47843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4785057b4bcdSMatthew G Knepley } 4786057b4bcdSMatthew G Knepley 47874f37162bSMatthew G. Knepley /*@ 4788bb7acecfSBarry Smith DMGetNaturalSF - Get the `PetscSF` encoding the map back to the original mesh ordering 47894f37162bSMatthew G. Knepley 47904f37162bSMatthew G. Knepley Input Parameter: 4791bb7acecfSBarry Smith . dm - The `DM` 47924f37162bSMatthew G. Knepley 47934f37162bSMatthew G. Knepley Output Parameter: 4794bb7acecfSBarry Smith . sf - The `PetscSF` 47954f37162bSMatthew G. Knepley 47964f37162bSMatthew G. Knepley Level: intermediate 47974f37162bSMatthew G. Knepley 4798bb7acecfSBarry Smith Note: 4799bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 48004f37162bSMatthew G. Knepley 48011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 48024f37162bSMatthew G. Knepley @*/ 4803d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNaturalSF(DM dm, PetscSF *sf) 4804d71ae5a4SJacob Faibussowitsch { 48054f37162bSMatthew G. Knepley PetscFunctionBegin; 48064f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48074f572ea9SToby Isaac PetscAssertPointer(sf, 2); 48084f37162bSMatthew G. Knepley *sf = dm->sfNatural; 48093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48104f37162bSMatthew G. Knepley } 48114f37162bSMatthew G. Knepley 48124f37162bSMatthew G. Knepley /*@ 48134f37162bSMatthew G. Knepley DMSetNaturalSF - Set the PetscSF encoding the map back to the original mesh ordering 48144f37162bSMatthew G. Knepley 48154f37162bSMatthew G. Knepley Input Parameters: 48164f37162bSMatthew G. Knepley + dm - The DM 48174f37162bSMatthew G. Knepley - sf - The PetscSF 48184f37162bSMatthew G. Knepley 48194f37162bSMatthew G. Knepley Level: intermediate 48204f37162bSMatthew G. Knepley 48211cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 48224f37162bSMatthew G. Knepley @*/ 4823d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNaturalSF(DM dm, PetscSF sf) 4824d71ae5a4SJacob Faibussowitsch { 48254f37162bSMatthew G. Knepley PetscFunctionBegin; 48264f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48274f37162bSMatthew G. Knepley if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 48289566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 48299566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sfNatural)); 48304f37162bSMatthew G. Knepley dm->sfNatural = sf; 48313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48324f37162bSMatthew G. Knepley } 48334f37162bSMatthew G. Knepley 4834d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetDefaultAdjacency_Private(DM dm, PetscInt f, PetscObject disc) 4835d71ae5a4SJacob Faibussowitsch { 483634aa8a36SMatthew G. Knepley PetscClassId id; 483734aa8a36SMatthew G. Knepley 483834aa8a36SMatthew G. Knepley PetscFunctionBegin; 48399566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 484034aa8a36SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 48419566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 484234aa8a36SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 48439566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_TRUE, PETSC_FALSE)); 484417c1d62eSMatthew G. Knepley } else { 48459566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 484634aa8a36SMatthew G. Knepley } 48473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 484834aa8a36SMatthew G. Knepley } 484934aa8a36SMatthew G. Knepley 4850d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFieldEnlarge_Static(DM dm, PetscInt NfNew) 4851d71ae5a4SJacob Faibussowitsch { 485244a7f3ddSMatthew G. Knepley RegionField *tmpr; 485344a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf, f; 485444a7f3ddSMatthew G. Knepley 485544a7f3ddSMatthew G. Knepley PetscFunctionBegin; 48563ba16761SJacob Faibussowitsch if (Nf >= NfNew) PetscFunctionReturn(PETSC_SUCCESS); 48579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NfNew, &tmpr)); 485844a7f3ddSMatthew G. Knepley for (f = 0; f < Nf; ++f) tmpr[f] = dm->fields[f]; 48599371c9d4SSatish Balay for (f = Nf; f < NfNew; ++f) { 48609371c9d4SSatish Balay tmpr[f].disc = NULL; 48619371c9d4SSatish Balay tmpr[f].label = NULL; 48629371c9d4SSatish Balay tmpr[f].avoidTensor = PETSC_FALSE; 48639371c9d4SSatish Balay } 48649566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 486544a7f3ddSMatthew G. Knepley dm->Nf = NfNew; 486644a7f3ddSMatthew G. Knepley dm->fields = tmpr; 48673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 486844a7f3ddSMatthew G. Knepley } 486944a7f3ddSMatthew G. Knepley 487044a7f3ddSMatthew G. Knepley /*@ 487120f4b53cSBarry Smith DMClearFields - Remove all fields from the `DM` 487244a7f3ddSMatthew G. Knepley 487320f4b53cSBarry Smith Logically Collective 487444a7f3ddSMatthew G. Knepley 487544a7f3ddSMatthew G. Knepley Input Parameter: 487620f4b53cSBarry Smith . dm - The `DM` 487744a7f3ddSMatthew G. Knepley 487844a7f3ddSMatthew G. Knepley Level: intermediate 487944a7f3ddSMatthew G. Knepley 48801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetNumFields()`, `DMSetField()` 488144a7f3ddSMatthew G. Knepley @*/ 4882d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearFields(DM dm) 4883d71ae5a4SJacob Faibussowitsch { 488444a7f3ddSMatthew G. Knepley PetscInt f; 488544a7f3ddSMatthew G. Knepley 488644a7f3ddSMatthew G. Knepley PetscFunctionBegin; 488744a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 488844a7f3ddSMatthew G. Knepley for (f = 0; f < dm->Nf; ++f) { 48899566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 48909566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 489144a7f3ddSMatthew G. Knepley } 48929566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 489344a7f3ddSMatthew G. Knepley dm->fields = NULL; 489444a7f3ddSMatthew G. Knepley dm->Nf = 0; 48953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 489644a7f3ddSMatthew G. Knepley } 489744a7f3ddSMatthew G. Knepley 4898689b5837SMatthew G. Knepley /*@ 489920f4b53cSBarry Smith DMGetNumFields - Get the number of fields in the `DM` 4900689b5837SMatthew G. Knepley 490120f4b53cSBarry Smith Not Collective 4902689b5837SMatthew G. Knepley 4903689b5837SMatthew G. Knepley Input Parameter: 490420f4b53cSBarry Smith . dm - The `DM` 4905689b5837SMatthew G. Knepley 4906689b5837SMatthew G. Knepley Output Parameter: 490760225df5SJacob Faibussowitsch . numFields - The number of fields 4908689b5837SMatthew G. Knepley 4909689b5837SMatthew G. Knepley Level: intermediate 4910689b5837SMatthew G. Knepley 49111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNumFields()`, `DMSetField()` 4912689b5837SMatthew G. Knepley @*/ 4913d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumFields(DM dm, PetscInt *numFields) 4914d71ae5a4SJacob Faibussowitsch { 49150f21e855SMatthew G. Knepley PetscFunctionBegin; 49160f21e855SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49174f572ea9SToby Isaac PetscAssertPointer(numFields, 2); 491844a7f3ddSMatthew G. Knepley *numFields = dm->Nf; 49193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4920af122d2aSMatthew G Knepley } 4921af122d2aSMatthew G Knepley 4922689b5837SMatthew G. Knepley /*@ 492320f4b53cSBarry Smith DMSetNumFields - Set the number of fields in the `DM` 4924689b5837SMatthew G. Knepley 492520f4b53cSBarry Smith Logically Collective 4926689b5837SMatthew G. Knepley 4927689b5837SMatthew G. Knepley Input Parameters: 492820f4b53cSBarry Smith + dm - The `DM` 492960225df5SJacob Faibussowitsch - numFields - The number of fields 4930689b5837SMatthew G. Knepley 4931689b5837SMatthew G. Knepley Level: intermediate 4932689b5837SMatthew G. Knepley 49331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetField()` 4934689b5837SMatthew G. Knepley @*/ 4935d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNumFields(DM dm, PetscInt numFields) 4936d71ae5a4SJacob Faibussowitsch { 49370f21e855SMatthew G. Knepley PetscInt Nf, f; 4938af122d2aSMatthew G Knepley 4939af122d2aSMatthew G Knepley PetscFunctionBegin; 4940af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49419566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 49420f21e855SMatthew G. Knepley for (f = Nf; f < numFields; ++f) { 49430f21e855SMatthew G. Knepley PetscContainer obj; 49440f21e855SMatthew G. Knepley 49459566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject)dm), &obj)); 49469566063dSJacob Faibussowitsch PetscCall(DMAddField(dm, NULL, (PetscObject)obj)); 49479566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&obj)); 4948af122d2aSMatthew G Knepley } 49493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4950af122d2aSMatthew G Knepley } 4951af122d2aSMatthew G Knepley 4952c1929be8SMatthew G. Knepley /*@ 4953bb7acecfSBarry Smith DMGetField - Return the `DMLabel` and discretization object for a given `DM` field 4954c1929be8SMatthew G. Knepley 495520f4b53cSBarry Smith Not Collective 4956c1929be8SMatthew G. Knepley 4957c1929be8SMatthew G. Knepley Input Parameters: 4958bb7acecfSBarry Smith + dm - The `DM` 4959c1929be8SMatthew G. Knepley - f - The field number 4960c1929be8SMatthew G. Knepley 496144a7f3ddSMatthew G. Knepley Output Parameters: 496220f4b53cSBarry Smith + label - The label indicating the support of the field, or `NULL` for the entire mesh (pass in `NULL` if not needed) 496320f4b53cSBarry Smith - disc - The discretization object (pass in `NULL` if not needed) 4964c1929be8SMatthew G. Knepley 496544a7f3ddSMatthew G. Knepley Level: intermediate 4966c1929be8SMatthew G. Knepley 49671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()` 4968c1929be8SMatthew G. Knepley @*/ 4969d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetField(DM dm, PetscInt f, DMLabel *label, PetscObject *disc) 4970d71ae5a4SJacob Faibussowitsch { 4971af122d2aSMatthew G Knepley PetscFunctionBegin; 4972af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49734f572ea9SToby Isaac PetscAssertPointer(disc, 4); 49747a8be351SBarry Smith PetscCheck((f >= 0) && (f < dm->Nf), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, dm->Nf); 497544a7f3ddSMatthew G. Knepley if (label) *label = dm->fields[f].label; 4976bb7acecfSBarry Smith if (disc) *disc = dm->fields[f].disc; 49773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4978decb47aaSMatthew G. Knepley } 4979decb47aaSMatthew G. Knepley 4980083401c6SMatthew G. Knepley /* Does not clear the DS */ 4981d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField_Internal(DM dm, PetscInt f, DMLabel label, PetscObject disc) 4982d71ae5a4SJacob Faibussowitsch { 4983083401c6SMatthew G. Knepley PetscFunctionBegin; 49849566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, f + 1)); 49859566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 49869566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 4987083401c6SMatthew G. Knepley dm->fields[f].label = label; 4988bb7acecfSBarry Smith dm->fields[f].disc = disc; 49899566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 4990835f2295SStefano Zampini PetscCall(PetscObjectReference(disc)); 49913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4992083401c6SMatthew G. Knepley } 4993083401c6SMatthew G. Knepley 4994ffeef943SBarry Smith /*@ 4995bb7acecfSBarry Smith DMSetField - Set the discretization object for a given `DM` field. Usually one would call `DMAddField()` which automatically handles 4996bb7acecfSBarry Smith the field numbering. 4997c1929be8SMatthew G. Knepley 499820f4b53cSBarry Smith Logically Collective 4999c1929be8SMatthew G. Knepley 5000c1929be8SMatthew G. Knepley Input Parameters: 5001bb7acecfSBarry Smith + dm - The `DM` 5002c1929be8SMatthew G. Knepley . f - The field number 500320f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh 5004bb7acecfSBarry Smith - disc - The discretization object 5005c1929be8SMatthew G. Knepley 500644a7f3ddSMatthew G. Knepley Level: intermediate 5007c1929be8SMatthew G. Knepley 50081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()` 5009c1929be8SMatthew G. Knepley @*/ 5010d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField(DM dm, PetscInt f, DMLabel label, PetscObject disc) 5011d71ae5a4SJacob Faibussowitsch { 5012decb47aaSMatthew G. Knepley PetscFunctionBegin; 5013decb47aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5014e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 5015bb7acecfSBarry Smith PetscValidHeader(disc, 4); 50167a8be351SBarry Smith PetscCheck(f >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be non-negative", f); 5017bb7acecfSBarry Smith PetscCall(DMSetField_Internal(dm, f, label, disc)); 5018bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, f, disc)); 50199566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 50203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 502144a7f3ddSMatthew G. Knepley } 502244a7f3ddSMatthew G. Knepley 5023ffeef943SBarry Smith /*@ 5024bb7acecfSBarry Smith DMAddField - Add a field to a `DM` object. A field is a function space defined by of a set of discretization points (geometric entities) 5025bb7acecfSBarry Smith and a discretization object that defines the function space associated with those points. 502644a7f3ddSMatthew G. Knepley 502720f4b53cSBarry Smith Logically Collective 502844a7f3ddSMatthew G. Knepley 502944a7f3ddSMatthew G. Knepley Input Parameters: 5030bb7acecfSBarry Smith + dm - The `DM` 503120f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh 5032bb7acecfSBarry Smith - disc - The discretization object 503344a7f3ddSMatthew G. Knepley 503444a7f3ddSMatthew G. Knepley Level: intermediate 503544a7f3ddSMatthew G. Knepley 5036bb7acecfSBarry Smith Notes: 5037bb7acecfSBarry Smith The label already exists or will be added to the `DM` with `DMSetLabel()`. 5038bb7acecfSBarry Smith 5039da81f932SPierre Jolivet For example, a piecewise continuous pressure field can be defined by coefficients at the cell centers of a mesh and piecewise constant functions 5040bb7acecfSBarry Smith within each cell. Thus a specific function in the space is defined by the combination of a `Vec` containing the coefficients, a `DM` defining the 5041bb7acecfSBarry Smith geometry entities, a `DMLabel` indicating a subset of those geometric entities, and a discretization object, such as a `PetscFE`. 5042bb7acecfSBarry Smith 50431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLabel()`, `DMSetField()`, `DMGetField()`, `PetscFE` 504444a7f3ddSMatthew G. Knepley @*/ 5045d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddField(DM dm, DMLabel label, PetscObject disc) 5046d71ae5a4SJacob Faibussowitsch { 504744a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf; 504844a7f3ddSMatthew G. Knepley 504944a7f3ddSMatthew G. Knepley PetscFunctionBegin; 505044a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5051064a246eSJacob Faibussowitsch if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 5052bb7acecfSBarry Smith PetscValidHeader(disc, 3); 50539566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, Nf + 1)); 505444a7f3ddSMatthew G. Knepley dm->fields[Nf].label = label; 5055bb7acecfSBarry Smith dm->fields[Nf].disc = disc; 50569566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 5057835f2295SStefano Zampini PetscCall(PetscObjectReference(disc)); 5058bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, Nf, disc)); 50599566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 50603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5061af122d2aSMatthew G Knepley } 50626636e97aSMatthew G Knepley 5063e5e52638SMatthew G. Knepley /*@ 5064e0b68406SMatthew Knepley DMSetFieldAvoidTensor - Set flag to avoid defining the field on tensor cells 5065e0b68406SMatthew Knepley 506620f4b53cSBarry Smith Logically Collective 5067e0b68406SMatthew Knepley 5068e0b68406SMatthew Knepley Input Parameters: 5069bb7acecfSBarry Smith + dm - The `DM` 5070e0b68406SMatthew Knepley . f - The field index 5071bb7acecfSBarry Smith - avoidTensor - `PETSC_TRUE` to skip defining the field on tensor cells 5072e0b68406SMatthew Knepley 5073e0b68406SMatthew Knepley Level: intermediate 5074e0b68406SMatthew Knepley 50751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()` 5076e0b68406SMatthew Knepley @*/ 5077d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFieldAvoidTensor(DM dm, PetscInt f, PetscBool avoidTensor) 5078d71ae5a4SJacob Faibussowitsch { 5079e0b68406SMatthew Knepley PetscFunctionBegin; 508063a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5081e0b68406SMatthew Knepley dm->fields[f].avoidTensor = avoidTensor; 50823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5083e0b68406SMatthew Knepley } 5084e0b68406SMatthew Knepley 5085e0b68406SMatthew Knepley /*@ 5086e0b68406SMatthew Knepley DMGetFieldAvoidTensor - Get flag to avoid defining the field on tensor cells 5087e0b68406SMatthew Knepley 508820f4b53cSBarry Smith Not Collective 5089e0b68406SMatthew Knepley 5090e0b68406SMatthew Knepley Input Parameters: 5091bb7acecfSBarry Smith + dm - The `DM` 5092e0b68406SMatthew Knepley - f - The field index 5093e0b68406SMatthew Knepley 5094e0b68406SMatthew Knepley Output Parameter: 5095e0b68406SMatthew Knepley . avoidTensor - The flag to avoid defining the field on tensor cells 5096e0b68406SMatthew Knepley 5097e0b68406SMatthew Knepley Level: intermediate 5098e0b68406SMatthew Knepley 509960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`, `DMGetField()`, `DMSetFieldAvoidTensor()` 5100e0b68406SMatthew Knepley @*/ 5101d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFieldAvoidTensor(DM dm, PetscInt f, PetscBool *avoidTensor) 5102d71ae5a4SJacob Faibussowitsch { 5103e0b68406SMatthew Knepley PetscFunctionBegin; 510463a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5105e0b68406SMatthew Knepley *avoidTensor = dm->fields[f].avoidTensor; 51063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5107e0b68406SMatthew Knepley } 5108e0b68406SMatthew Knepley 5109e0b68406SMatthew Knepley /*@ 5110bb7acecfSBarry Smith DMCopyFields - Copy the discretizations for the `DM` into another `DM` 5111e5e52638SMatthew G. Knepley 511220f4b53cSBarry Smith Collective 5113e5e52638SMatthew G. Knepley 5114bb4b53efSMatthew G. Knepley Input Parameters: 5115bb4b53efSMatthew G. Knepley + dm - The `DM` 5116bb4b53efSMatthew G. Knepley . minDegree - Minimum degree for a discretization, or `PETSC_DETERMINE` for no limit 5117bb4b53efSMatthew G. Knepley - maxDegree - Maximum degree for a discretization, or `PETSC_DETERMINE` for no limit 5118e5e52638SMatthew G. Knepley 5119e5e52638SMatthew G. Knepley Output Parameter: 5120bb7acecfSBarry Smith . newdm - The `DM` 5121e5e52638SMatthew G. Knepley 5122e5e52638SMatthew G. Knepley Level: advanced 5123e5e52638SMatthew G. Knepley 51241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetField()`, `DMSetField()`, `DMAddField()`, `DMCopyDS()`, `DMGetDS()`, `DMGetCellDS()` 5125e5e52638SMatthew G. Knepley @*/ 5126bb4b53efSMatthew G. Knepley PetscErrorCode DMCopyFields(DM dm, PetscInt minDegree, PetscInt maxDegree, DM newdm) 5127d71ae5a4SJacob Faibussowitsch { 5128e5e52638SMatthew G. Knepley PetscInt Nf, f; 5129e5e52638SMatthew G. Knepley 5130e5e52638SMatthew G. Knepley PetscFunctionBegin; 51313ba16761SJacob Faibussowitsch if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS); 51329566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 51339566063dSJacob Faibussowitsch PetscCall(DMClearFields(newdm)); 5134e5e52638SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5135e5e52638SMatthew G. Knepley DMLabel label; 5136e5e52638SMatthew G. Knepley PetscObject field; 5137bb4b53efSMatthew G. Knepley PetscClassId id; 513834aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 5139e5e52638SMatthew G. Knepley 51409566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, &label, &field)); 5141bb4b53efSMatthew G. Knepley PetscCall(PetscObjectGetClassId(field, &id)); 5142bb4b53efSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 5143bb4b53efSMatthew G. Knepley PetscFE newfe; 5144bb4b53efSMatthew G. Knepley 5145bb4b53efSMatthew G. Knepley PetscCall(PetscFELimitDegree((PetscFE)field, minDegree, maxDegree, &newfe)); 5146bb4b53efSMatthew G. Knepley PetscCall(DMSetField(newdm, f, label, (PetscObject)newfe)); 5147bb4b53efSMatthew G. Knepley PetscCall(PetscFEDestroy(&newfe)); 5148bb4b53efSMatthew G. Knepley } else { 51499566063dSJacob Faibussowitsch PetscCall(DMSetField(newdm, f, label, field)); 5150bb4b53efSMatthew G. Knepley } 51519566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, f, &useCone, &useClosure)); 51529566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(newdm, f, useCone, useClosure)); 515334aa8a36SMatthew G. Knepley } 51543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 515534aa8a36SMatthew G. Knepley } 515634aa8a36SMatthew G. Knepley 515734aa8a36SMatthew G. Knepley /*@ 515834aa8a36SMatthew G. Knepley DMGetAdjacency - Returns the flags for determining variable influence 515934aa8a36SMatthew G. Knepley 516020f4b53cSBarry Smith Not Collective 516134aa8a36SMatthew G. Knepley 516234aa8a36SMatthew G. Knepley Input Parameters: 516320f4b53cSBarry Smith + dm - The `DM` object 516420f4b53cSBarry Smith - f - The field number, or `PETSC_DEFAULT` for the default adjacency 516534aa8a36SMatthew G. Knepley 5166d8d19677SJose E. Roman Output Parameters: 516734aa8a36SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 516834aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 516934aa8a36SMatthew G. Knepley 517034aa8a36SMatthew G. Knepley Level: developer 517134aa8a36SMatthew G. Knepley 517220f4b53cSBarry Smith Notes: 517320f4b53cSBarry Smith .vb 517420f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 517520f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 517620f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 517720f4b53cSBarry Smith .ve 517820f4b53cSBarry Smith Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 517920f4b53cSBarry Smith 51801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetAdjacency()`, `DMGetField()`, `DMSetField()` 518134aa8a36SMatthew G. Knepley @*/ 5182d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAdjacency(DM dm, PetscInt f, PetscBool *useCone, PetscBool *useClosure) 5183d71ae5a4SJacob Faibussowitsch { 518434aa8a36SMatthew G. Knepley PetscFunctionBegin; 518534aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 51864f572ea9SToby Isaac if (useCone) PetscAssertPointer(useCone, 3); 51874f572ea9SToby Isaac if (useClosure) PetscAssertPointer(useClosure, 4); 518834aa8a36SMatthew G. Knepley if (f < 0) { 518934aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->adjacency[0]; 519034aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->adjacency[1]; 519134aa8a36SMatthew G. Knepley } else { 519234aa8a36SMatthew G. Knepley PetscInt Nf; 519334aa8a36SMatthew G. Knepley 51949566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 51957a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 519634aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->fields[f].adjacency[0]; 519734aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->fields[f].adjacency[1]; 519834aa8a36SMatthew G. Knepley } 51993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 520034aa8a36SMatthew G. Knepley } 520134aa8a36SMatthew G. Knepley 520234aa8a36SMatthew G. Knepley /*@ 520334aa8a36SMatthew G. Knepley DMSetAdjacency - Set the flags for determining variable influence 520434aa8a36SMatthew G. Knepley 520520f4b53cSBarry Smith Not Collective 520634aa8a36SMatthew G. Knepley 520734aa8a36SMatthew G. Knepley Input Parameters: 520820f4b53cSBarry Smith + dm - The `DM` object 520934aa8a36SMatthew G. Knepley . f - The field number 521034aa8a36SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 521134aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 521234aa8a36SMatthew G. Knepley 521334aa8a36SMatthew G. Knepley Level: developer 521434aa8a36SMatthew G. Knepley 521520f4b53cSBarry Smith Notes: 521620f4b53cSBarry Smith .vb 521720f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 521820f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 521920f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 522020f4b53cSBarry Smith .ve 522120f4b53cSBarry Smith Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 522220f4b53cSBarry Smith 52231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetAdjacency()`, `DMGetField()`, `DMSetField()` 522434aa8a36SMatthew G. Knepley @*/ 5225d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAdjacency(DM dm, PetscInt f, PetscBool useCone, PetscBool useClosure) 5226d71ae5a4SJacob Faibussowitsch { 522734aa8a36SMatthew G. Knepley PetscFunctionBegin; 522834aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 522934aa8a36SMatthew G. Knepley if (f < 0) { 523034aa8a36SMatthew G. Knepley dm->adjacency[0] = useCone; 523134aa8a36SMatthew G. Knepley dm->adjacency[1] = useClosure; 523234aa8a36SMatthew G. Knepley } else { 523334aa8a36SMatthew G. Knepley PetscInt Nf; 523434aa8a36SMatthew G. Knepley 52359566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 52367a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 523734aa8a36SMatthew G. Knepley dm->fields[f].adjacency[0] = useCone; 523834aa8a36SMatthew G. Knepley dm->fields[f].adjacency[1] = useClosure; 5239e5e52638SMatthew G. Knepley } 52403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5241e5e52638SMatthew G. Knepley } 5242e5e52638SMatthew G. Knepley 5243b0441da4SMatthew G. Knepley /*@ 5244b0441da4SMatthew G. Knepley DMGetBasicAdjacency - Returns the flags for determining variable influence, using either the default or field 0 if it is defined 5245b0441da4SMatthew G. Knepley 5246b0441da4SMatthew G. Knepley Not collective 5247b0441da4SMatthew G. Knepley 5248f899ff85SJose E. Roman Input Parameter: 524920f4b53cSBarry Smith . dm - The `DM` object 5250b0441da4SMatthew G. Knepley 5251d8d19677SJose E. Roman Output Parameters: 5252b0441da4SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 5253b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5254b0441da4SMatthew G. Knepley 5255b0441da4SMatthew G. Knepley Level: developer 5256b0441da4SMatthew G. Knepley 525720f4b53cSBarry Smith Notes: 525820f4b53cSBarry Smith .vb 525920f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 526020f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 526120f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 526220f4b53cSBarry Smith .ve 526320f4b53cSBarry Smith 52641cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5265b0441da4SMatthew G. Knepley @*/ 5266d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasicAdjacency(DM dm, PetscBool *useCone, PetscBool *useClosure) 5267d71ae5a4SJacob Faibussowitsch { 5268b0441da4SMatthew G. Knepley PetscInt Nf; 5269b0441da4SMatthew G. Knepley 5270b0441da4SMatthew G. Knepley PetscFunctionBegin; 5271b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 52724f572ea9SToby Isaac if (useCone) PetscAssertPointer(useCone, 2); 52734f572ea9SToby Isaac if (useClosure) PetscAssertPointer(useClosure, 3); 52749566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5275b0441da4SMatthew G. Knepley if (!Nf) { 52769566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5277b0441da4SMatthew G. Knepley } else { 52789566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, 0, useCone, useClosure)); 5279b0441da4SMatthew G. Knepley } 52803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5281b0441da4SMatthew G. Knepley } 5282b0441da4SMatthew G. Knepley 5283b0441da4SMatthew G. Knepley /*@ 5284b0441da4SMatthew G. Knepley DMSetBasicAdjacency - Set the flags for determining variable influence, using either the default or field 0 if it is defined 5285b0441da4SMatthew G. Knepley 528620f4b53cSBarry Smith Not Collective 5287b0441da4SMatthew G. Knepley 5288b0441da4SMatthew G. Knepley Input Parameters: 528920f4b53cSBarry Smith + dm - The `DM` object 5290b0441da4SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 5291b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5292b0441da4SMatthew G. Knepley 5293b0441da4SMatthew G. Knepley Level: developer 5294b0441da4SMatthew G. Knepley 529520f4b53cSBarry Smith Notes: 529620f4b53cSBarry Smith .vb 529720f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 529820f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 529920f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 530020f4b53cSBarry Smith .ve 530120f4b53cSBarry Smith 53021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5303b0441da4SMatthew G. Knepley @*/ 5304d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetBasicAdjacency(DM dm, PetscBool useCone, PetscBool useClosure) 5305d71ae5a4SJacob Faibussowitsch { 5306b0441da4SMatthew G. Knepley PetscInt Nf; 5307b0441da4SMatthew G. Knepley 5308b0441da4SMatthew G. Knepley PetscFunctionBegin; 5309b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 53109566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5311b0441da4SMatthew G. Knepley if (!Nf) { 53129566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5313b0441da4SMatthew G. Knepley } else { 53149566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, 0, useCone, useClosure)); 5315e5e52638SMatthew G. Knepley } 53163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5317e5e52638SMatthew G. Knepley } 5318e5e52638SMatthew G. Knepley 5319d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompleteBCLabels_Internal(DM dm) 5320d71ae5a4SJacob Faibussowitsch { 5321799db056SMatthew G. Knepley DM plex; 5322799db056SMatthew G. Knepley DMLabel *labels, *glabels; 5323799db056SMatthew G. Knepley const char **names; 5324799db056SMatthew G. Knepley char *sendNames, *recvNames; 5325799db056SMatthew G. Knepley PetscInt Nds, s, maxLabels = 0, maxLen = 0, gmaxLen, Nl = 0, gNl, l, gl, m; 5326799db056SMatthew G. Knepley size_t len; 5327799db056SMatthew G. Knepley MPI_Comm comm; 5328799db056SMatthew G. Knepley PetscMPIInt rank, size, p, *counts, *displs; 5329783e2ec8SMatthew G. Knepley 5330783e2ec8SMatthew G. Knepley PetscFunctionBegin; 5331799db056SMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 5332799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(comm, &size)); 5333799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5334799db056SMatthew G. Knepley PetscCall(DMGetNumDS(dm, &Nds)); 5335799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5336799db056SMatthew G. Knepley PetscDS dsBC; 5337799db056SMatthew G. Knepley PetscInt numBd; 5338799db056SMatthew G. Knepley 533907218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL)); 5340799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5341799db056SMatthew G. Knepley maxLabels += numBd; 5342799db056SMatthew G. Knepley } 5343799db056SMatthew G. Knepley PetscCall(PetscCalloc1(maxLabels, &labels)); 5344799db056SMatthew G. Knepley /* Get list of labels to be completed */ 5345799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5346799db056SMatthew G. Knepley PetscDS dsBC; 5347799db056SMatthew G. Knepley PetscInt numBd, bd; 5348799db056SMatthew G. Knepley 534907218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL)); 5350799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5351799db056SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 5352799db056SMatthew G. Knepley DMLabel label; 5353799db056SMatthew G. Knepley PetscInt field; 5354799db056SMatthew G. Knepley PetscObject obj; 5355799db056SMatthew G. Knepley PetscClassId id; 5356799db056SMatthew G. Knepley 5357799db056SMatthew G. Knepley PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 53589566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 53599566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 5360799db056SMatthew G. Knepley if (!(id == PETSCFE_CLASSID) || !label) continue; 53619371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 53629371c9d4SSatish Balay if (labels[l] == label) break; 5363799db056SMatthew G. Knepley if (l == Nl) labels[Nl++] = label; 5364783e2ec8SMatthew G. Knepley } 5365799db056SMatthew G. Knepley } 5366799db056SMatthew G. Knepley /* Get label names */ 5367799db056SMatthew G. Knepley PetscCall(PetscMalloc1(Nl, &names)); 5368799db056SMatthew G. Knepley for (l = 0; l < Nl; ++l) PetscCall(PetscObjectGetName((PetscObject)labels[l], &names[l])); 53699371c9d4SSatish Balay for (l = 0; l < Nl; ++l) { 53709371c9d4SSatish Balay PetscCall(PetscStrlen(names[l], &len)); 53719371c9d4SSatish Balay maxLen = PetscMax(maxLen, (PetscInt)len + 2); 53729371c9d4SSatish Balay } 5373799db056SMatthew G. Knepley PetscCall(PetscFree(labels)); 5374462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&maxLen, &gmaxLen, 1, MPIU_INT, MPI_MAX, comm)); 5375799db056SMatthew G. Knepley PetscCall(PetscCalloc1(Nl * gmaxLen, &sendNames)); 5376c6a7a370SJeremy L Thompson for (l = 0; l < Nl; ++l) PetscCall(PetscStrncpy(&sendNames[gmaxLen * l], names[l], gmaxLen)); 5377799db056SMatthew G. Knepley PetscCall(PetscFree(names)); 5378799db056SMatthew G. Knepley /* Put all names on all processes */ 5379799db056SMatthew G. Knepley PetscCall(PetscCalloc2(size, &counts, size + 1, &displs)); 5380799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgather(&Nl, 1, MPI_INT, counts, 1, MPI_INT, comm)); 5381799db056SMatthew G. Knepley for (p = 0; p < size; ++p) displs[p + 1] = displs[p] + counts[p]; 5382799db056SMatthew G. Knepley gNl = displs[size]; 53839371c9d4SSatish Balay for (p = 0; p < size; ++p) { 53849371c9d4SSatish Balay counts[p] *= gmaxLen; 53859371c9d4SSatish Balay displs[p] *= gmaxLen; 53869371c9d4SSatish Balay } 5387799db056SMatthew G. Knepley PetscCall(PetscCalloc2(gNl * gmaxLen, &recvNames, gNl, &glabels)); 5388799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgatherv(sendNames, counts[rank], MPI_CHAR, recvNames, counts, displs, MPI_CHAR, comm)); 5389799db056SMatthew G. Knepley PetscCall(PetscFree2(counts, displs)); 5390799db056SMatthew G. Knepley PetscCall(PetscFree(sendNames)); 5391799db056SMatthew G. Knepley for (l = 0, gl = 0; l < gNl; ++l) { 5392799db056SMatthew G. Knepley PetscCall(DMGetLabel(dm, &recvNames[l * gmaxLen], &glabels[gl])); 5393799db056SMatthew G. Knepley PetscCheck(glabels[gl], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Label %s missing on rank %d", &recvNames[l * gmaxLen], rank); 53949371c9d4SSatish Balay for (m = 0; m < gl; ++m) 53955d6b2bfcSJames Wright if (glabels[m] == glabels[gl]) goto next_label; 53969566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 5397799db056SMatthew G. Knepley PetscCall(DMPlexLabelComplete(plex, glabels[gl])); 53989566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 5399799db056SMatthew G. Knepley ++gl; 54005d6b2bfcSJames Wright next_label: 54015d6b2bfcSJames Wright continue; 5402783e2ec8SMatthew G. Knepley } 5403799db056SMatthew G. Knepley PetscCall(PetscFree2(recvNames, glabels)); 54043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5405783e2ec8SMatthew G. Knepley } 5406783e2ec8SMatthew G. Knepley 5407d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDSEnlarge_Static(DM dm, PetscInt NdsNew) 5408d71ae5a4SJacob Faibussowitsch { 5409e5e52638SMatthew G. Knepley DMSpace *tmpd; 5410e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5411e5e52638SMatthew G. Knepley 5412e5e52638SMatthew G. Knepley PetscFunctionBegin; 54133ba16761SJacob Faibussowitsch if (Nds >= NdsNew) PetscFunctionReturn(PETSC_SUCCESS); 54149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NdsNew, &tmpd)); 5415e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) tmpd[s] = dm->probs[s]; 54169371c9d4SSatish Balay for (s = Nds; s < NdsNew; ++s) { 54179371c9d4SSatish Balay tmpd[s].ds = NULL; 54189371c9d4SSatish Balay tmpd[s].label = NULL; 54199371c9d4SSatish Balay tmpd[s].fields = NULL; 54209371c9d4SSatish Balay } 54219566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5422e5e52638SMatthew G. Knepley dm->Nds = NdsNew; 5423e5e52638SMatthew G. Knepley dm->probs = tmpd; 54243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5425e5e52638SMatthew G. Knepley } 5426e5e52638SMatthew G. Knepley 5427e5e52638SMatthew G. Knepley /*@ 542820f4b53cSBarry Smith DMGetNumDS - Get the number of discrete systems in the `DM` 5429e5e52638SMatthew G. Knepley 543020f4b53cSBarry Smith Not Collective 5431e5e52638SMatthew G. Knepley 5432e5e52638SMatthew G. Knepley Input Parameter: 543320f4b53cSBarry Smith . dm - The `DM` 5434e5e52638SMatthew G. Knepley 5435e5e52638SMatthew G. Knepley Output Parameter: 543620f4b53cSBarry Smith . Nds - The number of `PetscDS` objects 5437e5e52638SMatthew G. Knepley 5438e5e52638SMatthew G. Knepley Level: intermediate 5439e5e52638SMatthew G. Knepley 54401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMGetCellDS()` 5441e5e52638SMatthew G. Knepley @*/ 5442d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumDS(DM dm, PetscInt *Nds) 5443d71ae5a4SJacob Faibussowitsch { 5444e5e52638SMatthew G. Knepley PetscFunctionBegin; 5445e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 54464f572ea9SToby Isaac PetscAssertPointer(Nds, 2); 5447e5e52638SMatthew G. Knepley *Nds = dm->Nds; 54483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5449e5e52638SMatthew G. Knepley } 5450e5e52638SMatthew G. Knepley 5451e5e52638SMatthew G. Knepley /*@ 545220f4b53cSBarry Smith DMClearDS - Remove all discrete systems from the `DM` 5453e5e52638SMatthew G. Knepley 545420f4b53cSBarry Smith Logically Collective 5455e5e52638SMatthew G. Knepley 5456e5e52638SMatthew G. Knepley Input Parameter: 545720f4b53cSBarry Smith . dm - The `DM` 5458e5e52638SMatthew G. Knepley 5459e5e52638SMatthew G. Knepley Level: intermediate 5460e5e52638SMatthew G. Knepley 54611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumDS()`, `DMGetDS()`, `DMSetField()` 5462e5e52638SMatthew G. Knepley @*/ 5463d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearDS(DM dm) 5464d71ae5a4SJacob Faibussowitsch { 5465e5e52638SMatthew G. Knepley PetscInt s; 5466e5e52638SMatthew G. Knepley 5467e5e52638SMatthew G. Knepley PetscFunctionBegin; 5468e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5469e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 54709566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 547107218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[s].dsIn)); 54729566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[s].label)); 54739566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[s].fields)); 5474e5e52638SMatthew G. Knepley } 54759566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5476e5e52638SMatthew G. Knepley dm->probs = NULL; 5477e5e52638SMatthew G. Knepley dm->Nds = 0; 54783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5479e5e52638SMatthew G. Knepley } 5480e5e52638SMatthew G. Knepley 5481e5e52638SMatthew G. Knepley /*@ 548220f4b53cSBarry Smith DMGetDS - Get the default `PetscDS` 5483e5e52638SMatthew G. Knepley 548420f4b53cSBarry Smith Not Collective 5485e5e52638SMatthew G. Knepley 5486e5e52638SMatthew G. Knepley Input Parameter: 548720f4b53cSBarry Smith . dm - The `DM` 5488e5e52638SMatthew G. Knepley 5489e5e52638SMatthew G. Knepley Output Parameter: 549007218a29SMatthew G. Knepley . ds - The default `PetscDS` 5491e5e52638SMatthew G. Knepley 5492e5e52638SMatthew G. Knepley Level: intermediate 5493e5e52638SMatthew G. Knepley 54941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCellDS()`, `DMGetRegionDS()` 5495e5e52638SMatthew G. Knepley @*/ 549607218a29SMatthew G. Knepley PetscErrorCode DMGetDS(DM dm, PetscDS *ds) 5497d71ae5a4SJacob Faibussowitsch { 5498e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5499e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 55004f572ea9SToby Isaac PetscAssertPointer(ds, 2); 550107218a29SMatthew G. Knepley PetscCheck(dm->Nds > 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Need to call DMCreateDS() before calling DMGetDS()"); 550207218a29SMatthew G. Knepley *ds = dm->probs[0].ds; 55033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5504e5e52638SMatthew G. Knepley } 5505e5e52638SMatthew G. Knepley 5506e5e52638SMatthew G. Knepley /*@ 550720f4b53cSBarry Smith DMGetCellDS - Get the `PetscDS` defined on a given cell 5508e5e52638SMatthew G. Knepley 550920f4b53cSBarry Smith Not Collective 5510e5e52638SMatthew G. Knepley 5511e5e52638SMatthew G. Knepley Input Parameters: 551220f4b53cSBarry Smith + dm - The `DM` 551320f4b53cSBarry Smith - point - Cell for the `PetscDS` 5514e5e52638SMatthew G. Knepley 551507218a29SMatthew G. Knepley Output Parameters: 551607218a29SMatthew G. Knepley + ds - The `PetscDS` defined on the given cell 551707218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or NULL if the same ds 5518e5e52638SMatthew G. Knepley 5519e5e52638SMatthew G. Knepley Level: developer 5520e5e52638SMatthew G. Knepley 55211cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMSetRegionDS()` 5522e5e52638SMatthew G. Knepley @*/ 552307218a29SMatthew G. Knepley PetscErrorCode DMGetCellDS(DM dm, PetscInt point, PetscDS *ds, PetscDS *dsIn) 5524d71ae5a4SJacob Faibussowitsch { 552507218a29SMatthew G. Knepley PetscDS dsDef = NULL; 5526e5e52638SMatthew G. Knepley PetscInt s; 5527e5e52638SMatthew G. Knepley 5528e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5529e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 55304f572ea9SToby Isaac if (ds) PetscAssertPointer(ds, 3); 55314f572ea9SToby Isaac if (dsIn) PetscAssertPointer(dsIn, 4); 553263a3b9bcSJacob Faibussowitsch PetscCheck(point >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Mesh point cannot be negative: %" PetscInt_FMT, point); 553307218a29SMatthew G. Knepley if (ds) *ds = NULL; 553407218a29SMatthew G. Knepley if (dsIn) *dsIn = NULL; 5535e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 5536e5e52638SMatthew G. Knepley PetscInt val; 5537e5e52638SMatthew G. Knepley 55389371c9d4SSatish Balay if (!dm->probs[s].label) { 553907218a29SMatthew G. Knepley dsDef = dm->probs[s].ds; 55409371c9d4SSatish Balay } else { 55419566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(dm->probs[s].label, point, &val)); 55429371c9d4SSatish Balay if (val >= 0) { 554307218a29SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 554407218a29SMatthew G. Knepley if (dsIn) *dsIn = dm->probs[s].dsIn; 55459371c9d4SSatish Balay break; 55469371c9d4SSatish Balay } 5547e5e52638SMatthew G. Knepley } 5548e5e52638SMatthew G. Knepley } 554907218a29SMatthew G. Knepley if (ds && !*ds) *ds = dsDef; 55503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5551e5e52638SMatthew G. Knepley } 5552e5e52638SMatthew G. Knepley 5553e5e52638SMatthew G. Knepley /*@ 555420f4b53cSBarry Smith DMGetRegionDS - Get the `PetscDS` for a given mesh region, defined by a `DMLabel` 5555e5e52638SMatthew G. Knepley 555620f4b53cSBarry Smith Not Collective 5557e5e52638SMatthew G. Knepley 5558e5e52638SMatthew G. Knepley Input Parameters: 555920f4b53cSBarry Smith + dm - The `DM` 556020f4b53cSBarry Smith - label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh 5561e5e52638SMatthew G. Knepley 5562b3cf3223SMatthew G. Knepley Output Parameters: 556320f4b53cSBarry Smith + fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` 556407218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` 556507218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input in the given region, or `NULL` 5566e5e52638SMatthew G. Knepley 5567e5e52638SMatthew G. Knepley Level: advanced 5568e5e52638SMatthew G. Knepley 556920f4b53cSBarry Smith Note: 557020f4b53cSBarry Smith If a non-`NULL` label is given, but there is no `PetscDS` on that specific label, 557120f4b53cSBarry Smith the `PetscDS` for the full domain (if present) is returned. Returns with 557207218a29SMatthew G. Knepley fields = `NULL` and ds = `NULL` if there is no `PetscDS` for the full domain. 557320f4b53cSBarry Smith 55741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5575e5e52638SMatthew G. Knepley @*/ 557607218a29SMatthew G. Knepley PetscErrorCode DMGetRegionDS(DM dm, DMLabel label, IS *fields, PetscDS *ds, PetscDS *dsIn) 5577d71ae5a4SJacob Faibussowitsch { 5578e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5579e5e52638SMatthew G. Knepley 5580e5e52638SMatthew G. Knepley PetscFunctionBegin; 5581e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5582e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 55839371c9d4SSatish Balay if (fields) { 55844f572ea9SToby Isaac PetscAssertPointer(fields, 3); 55859371c9d4SSatish Balay *fields = NULL; 55869371c9d4SSatish Balay } 55879371c9d4SSatish Balay if (ds) { 55884f572ea9SToby Isaac PetscAssertPointer(ds, 4); 55899371c9d4SSatish Balay *ds = NULL; 55909371c9d4SSatish Balay } 559107218a29SMatthew G. Knepley if (dsIn) { 55924f572ea9SToby Isaac PetscAssertPointer(dsIn, 5); 559307218a29SMatthew G. Knepley *dsIn = NULL; 559407218a29SMatthew G. Knepley } 5595e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5596154ca461SJed Brown if (dm->probs[s].label == label || !dm->probs[s].label) { 5597b3cf3223SMatthew G. Knepley if (fields) *fields = dm->probs[s].fields; 5598b3cf3223SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 559907218a29SMatthew G. Knepley if (dsIn) *dsIn = dm->probs[s].dsIn; 56003ba16761SJacob Faibussowitsch if (dm->probs[s].label) PetscFunctionReturn(PETSC_SUCCESS); 5601b3cf3223SMatthew G. Knepley } 5602e5e52638SMatthew G. Knepley } 56033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5604e5e52638SMatthew G. Knepley } 5605e5e52638SMatthew G. Knepley 5606e5e52638SMatthew G. Knepley /*@ 5607bb7acecfSBarry Smith DMSetRegionDS - Set the `PetscDS` for a given mesh region, defined by a `DMLabel` 5608083401c6SMatthew G. Knepley 560920f4b53cSBarry Smith Collective 5610083401c6SMatthew G. Knepley 5611083401c6SMatthew G. Knepley Input Parameters: 5612bb7acecfSBarry Smith + dm - The `DM` 561320f4b53cSBarry Smith . label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh 561407218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` for all fields 561507218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region 561607218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS` 5617083401c6SMatthew G. Knepley 561820f4b53cSBarry Smith Level: advanced 561920f4b53cSBarry Smith 5620bb7acecfSBarry Smith Note: 5621bb7acecfSBarry Smith If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`. If the `PetscDS` is replaced, 5622083401c6SMatthew G. Knepley the fields argument is ignored. 5623083401c6SMatthew G. Knepley 56241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionNumDS()`, `DMGetDS()`, `DMGetCellDS()` 5625083401c6SMatthew G. Knepley @*/ 562607218a29SMatthew G. Knepley PetscErrorCode DMSetRegionDS(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 5627d71ae5a4SJacob Faibussowitsch { 5628083401c6SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5629083401c6SMatthew G. Knepley 5630083401c6SMatthew G. Knepley PetscFunctionBegin; 5631083401c6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5632083401c6SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 563307218a29SMatthew G. Knepley if (fields) PetscValidHeaderSpecific(fields, IS_CLASSID, 3); 5634064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 4); 563507218a29SMatthew G. Knepley if (dsIn) PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 5); 5636083401c6SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5637083401c6SMatthew G. Knepley if (dm->probs[s].label == label) { 56389566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 563907218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[s].dsIn)); 5640083401c6SMatthew G. Knepley dm->probs[s].ds = ds; 564107218a29SMatthew G. Knepley dm->probs[s].dsIn = dsIn; 56423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5643083401c6SMatthew G. Knepley } 5644083401c6SMatthew G. Knepley } 56459566063dSJacob Faibussowitsch PetscCall(DMDSEnlarge_Static(dm, Nds + 1)); 56469566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 56479566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 56489566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 564907218a29SMatthew G. Knepley PetscCall(PetscObjectReference((PetscObject)dsIn)); 5650083401c6SMatthew G. Knepley if (!label) { 5651083401c6SMatthew G. Knepley /* Put the NULL label at the front, so it is returned as the default */ 5652083401c6SMatthew G. Knepley for (s = Nds - 1; s >= 0; --s) dm->probs[s + 1] = dm->probs[s]; 5653083401c6SMatthew G. Knepley Nds = 0; 5654083401c6SMatthew G. Knepley } 5655083401c6SMatthew G. Knepley dm->probs[Nds].label = label; 5656083401c6SMatthew G. Knepley dm->probs[Nds].fields = fields; 5657083401c6SMatthew G. Knepley dm->probs[Nds].ds = ds; 565807218a29SMatthew G. Knepley dm->probs[Nds].dsIn = dsIn; 56593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5660083401c6SMatthew G. Knepley } 5661083401c6SMatthew G. Knepley 5662083401c6SMatthew G. Knepley /*@ 566320f4b53cSBarry Smith DMGetRegionNumDS - Get the `PetscDS` for a given mesh region, defined by the region number 5664e5e52638SMatthew G. Knepley 566520f4b53cSBarry Smith Not Collective 5666e5e52638SMatthew G. Knepley 5667e5e52638SMatthew G. Knepley Input Parameters: 566820f4b53cSBarry Smith + dm - The `DM` 5669e5e52638SMatthew G. Knepley - num - The region number, in [0, Nds) 5670e5e52638SMatthew G. Knepley 5671e5e52638SMatthew G. Knepley Output Parameters: 567220f4b53cSBarry Smith + label - The region label, or `NULL` 567320f4b53cSBarry Smith . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` 567407218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` 567507218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input in the given region, or `NULL` 5676e5e52638SMatthew G. Knepley 5677e5e52638SMatthew G. Knepley Level: advanced 5678e5e52638SMatthew G. Knepley 56791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5680e5e52638SMatthew G. Knepley @*/ 568107218a29SMatthew G. Knepley PetscErrorCode DMGetRegionNumDS(DM dm, PetscInt num, DMLabel *label, IS *fields, PetscDS *ds, PetscDS *dsIn) 5682d71ae5a4SJacob Faibussowitsch { 5683e5e52638SMatthew G. Knepley PetscInt Nds; 5684e5e52638SMatthew G. Knepley 5685e5e52638SMatthew G. Knepley PetscFunctionBegin; 5686e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 56879566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 568863a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 5689e5e52638SMatthew G. Knepley if (label) { 56904f572ea9SToby Isaac PetscAssertPointer(label, 3); 5691e5e52638SMatthew G. Knepley *label = dm->probs[num].label; 5692e5e52638SMatthew G. Knepley } 5693b3cf3223SMatthew G. Knepley if (fields) { 56944f572ea9SToby Isaac PetscAssertPointer(fields, 4); 5695b3cf3223SMatthew G. Knepley *fields = dm->probs[num].fields; 5696b3cf3223SMatthew G. Knepley } 5697e5e52638SMatthew G. Knepley if (ds) { 56984f572ea9SToby Isaac PetscAssertPointer(ds, 5); 5699e5e52638SMatthew G. Knepley *ds = dm->probs[num].ds; 5700e5e52638SMatthew G. Knepley } 570107218a29SMatthew G. Knepley if (dsIn) { 57024f572ea9SToby Isaac PetscAssertPointer(dsIn, 6); 570307218a29SMatthew G. Knepley *dsIn = dm->probs[num].dsIn; 570407218a29SMatthew G. Knepley } 57053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5706e5e52638SMatthew G. Knepley } 5707e5e52638SMatthew G. Knepley 5708e5e52638SMatthew G. Knepley /*@ 570920f4b53cSBarry Smith DMSetRegionNumDS - Set the `PetscDS` for a given mesh region, defined by the region number 5710e5e52638SMatthew G. Knepley 571120f4b53cSBarry Smith Not Collective 5712e5e52638SMatthew G. Knepley 5713e5e52638SMatthew G. Knepley Input Parameters: 571420f4b53cSBarry Smith + dm - The `DM` 5715083401c6SMatthew G. Knepley . num - The region number, in [0, Nds) 571620f4b53cSBarry Smith . label - The region label, or `NULL` 571707218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` to prevent setting 571807218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` to prevent setting 571907218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS` 5720e5e52638SMatthew G. Knepley 5721e5e52638SMatthew G. Knepley Level: advanced 5722e5e52638SMatthew G. Knepley 57231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5724e5e52638SMatthew G. Knepley @*/ 572507218a29SMatthew G. Knepley PetscErrorCode DMSetRegionNumDS(DM dm, PetscInt num, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 5726d71ae5a4SJacob Faibussowitsch { 5727083401c6SMatthew G. Knepley PetscInt Nds; 5728e5e52638SMatthew G. Knepley 5729e5e52638SMatthew G. Knepley PetscFunctionBegin; 5730e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5731ad540459SPierre Jolivet if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 57329566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 573363a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 57349566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 57359566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[num].label)); 5736083401c6SMatthew G. Knepley dm->probs[num].label = label; 5737083401c6SMatthew G. Knepley if (fields) { 5738083401c6SMatthew G. Knepley PetscValidHeaderSpecific(fields, IS_CLASSID, 4); 57399566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 57409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[num].fields)); 5741083401c6SMatthew G. Knepley dm->probs[num].fields = fields; 5742e5e52638SMatthew G. Knepley } 5743083401c6SMatthew G. Knepley if (ds) { 5744083401c6SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 5); 57459566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 57469566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[num].ds)); 5747083401c6SMatthew G. Knepley dm->probs[num].ds = ds; 5748083401c6SMatthew G. Knepley } 574907218a29SMatthew G. Knepley if (dsIn) { 575007218a29SMatthew G. Knepley PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 6); 575107218a29SMatthew G. Knepley PetscCall(PetscObjectReference((PetscObject)dsIn)); 575207218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[num].dsIn)); 575307218a29SMatthew G. Knepley dm->probs[num].dsIn = dsIn; 575407218a29SMatthew G. Knepley } 57553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5756e5e52638SMatthew G. Knepley } 5757e5e52638SMatthew G. Knepley 5758e5e52638SMatthew G. Knepley /*@ 575920f4b53cSBarry Smith DMFindRegionNum - Find the region number for a given `PetscDS`, or -1 if it is not found. 57601d3af9e0SMatthew G. Knepley 576120f4b53cSBarry Smith Not Collective 57621d3af9e0SMatthew G. Knepley 57631d3af9e0SMatthew G. Knepley Input Parameters: 576420f4b53cSBarry Smith + dm - The `DM` 576520f4b53cSBarry Smith - ds - The `PetscDS` defined on the given region 57661d3af9e0SMatthew G. Knepley 57671d3af9e0SMatthew G. Knepley Output Parameter: 57681d3af9e0SMatthew G. Knepley . num - The region number, in [0, Nds), or -1 if not found 57691d3af9e0SMatthew G. Knepley 57701d3af9e0SMatthew G. Knepley Level: advanced 57711d3af9e0SMatthew G. Knepley 57721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 57731d3af9e0SMatthew G. Knepley @*/ 5774d71ae5a4SJacob Faibussowitsch PetscErrorCode DMFindRegionNum(DM dm, PetscDS ds, PetscInt *num) 5775d71ae5a4SJacob Faibussowitsch { 57761d3af9e0SMatthew G. Knepley PetscInt Nds, n; 57771d3af9e0SMatthew G. Knepley 57781d3af9e0SMatthew G. Knepley PetscFunctionBegin; 57791d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 57801d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 2); 57814f572ea9SToby Isaac PetscAssertPointer(num, 3); 57829566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 57839371c9d4SSatish Balay for (n = 0; n < Nds; ++n) 57849371c9d4SSatish Balay if (ds == dm->probs[n].ds) break; 57851d3af9e0SMatthew G. Knepley if (n >= Nds) *num = -1; 57861d3af9e0SMatthew G. Knepley else *num = n; 57873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57881d3af9e0SMatthew G. Knepley } 57891d3af9e0SMatthew G. Knepley 5790cc4c1da9SBarry Smith /*@ 5791bb7acecfSBarry Smith DMCreateFEDefault - Create a `PetscFE` based on the celltype for the mesh 57922df84da0SMatthew G. Knepley 579320f4b53cSBarry Smith Not Collective 57942df84da0SMatthew G. Knepley 5795f1a722f8SMatthew G. Knepley Input Parameters: 5796bb7acecfSBarry Smith + dm - The `DM` 57972df84da0SMatthew G. Knepley . Nc - The number of components for the field 579820f4b53cSBarry Smith . prefix - The options prefix for the output `PetscFE`, or `NULL` 5799bb7acecfSBarry Smith - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree 58002df84da0SMatthew G. Knepley 58012df84da0SMatthew G. Knepley Output Parameter: 5802bb7acecfSBarry Smith . fem - The `PetscFE` 58032df84da0SMatthew G. Knepley 580420f4b53cSBarry Smith Level: intermediate 580520f4b53cSBarry Smith 5806bb7acecfSBarry Smith Note: 5807bb7acecfSBarry Smith This is a convenience method that just calls `PetscFECreateByCell()` underneath. 58082df84da0SMatthew G. Knepley 58091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscFECreateByCell()`, `DMAddField()`, `DMCreateDS()`, `DMGetCellDS()`, `DMGetRegionDS()` 58102df84da0SMatthew G. Knepley @*/ 5811d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFEDefault(DM dm, PetscInt Nc, const char prefix[], PetscInt qorder, PetscFE *fem) 5812d71ae5a4SJacob Faibussowitsch { 58132df84da0SMatthew G. Knepley DMPolytopeType ct; 58142df84da0SMatthew G. Knepley PetscInt dim, cStart; 58152df84da0SMatthew G. Knepley 58162df84da0SMatthew G. Knepley PetscFunctionBegin; 58172df84da0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 58182df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 2); 58194f572ea9SToby Isaac if (prefix) PetscAssertPointer(prefix, 3); 58202df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, qorder, 4); 58214f572ea9SToby Isaac PetscAssertPointer(fem, 5); 58229566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 58239566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 58249566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 58259566063dSJacob Faibussowitsch PetscCall(PetscFECreateByCell(PETSC_COMM_SELF, dim, Nc, ct, prefix, qorder, fem)); 58263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58272df84da0SMatthew G. Knepley } 58282df84da0SMatthew G. Knepley 58291d3af9e0SMatthew G. Knepley /*@ 5830bb7acecfSBarry Smith DMCreateDS - Create the discrete systems for the `DM` based upon the fields added to the `DM` 5831e5e52638SMatthew G. Knepley 583220f4b53cSBarry Smith Collective 5833e5e52638SMatthew G. Knepley 5834e5e52638SMatthew G. Knepley Input Parameter: 5835bb7acecfSBarry Smith . dm - The `DM` 5836e5e52638SMatthew G. Knepley 583720f4b53cSBarry Smith Options Database Key: 5838bb7acecfSBarry Smith . -dm_petscds_view - View all the `PetscDS` objects in this `DM` 583945480ffeSMatthew G. Knepley 584020f4b53cSBarry Smith Level: intermediate 584120f4b53cSBarry Smith 58421cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetField`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 5843e5e52638SMatthew G. Knepley @*/ 5844d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDS(DM dm) 5845d71ae5a4SJacob Faibussowitsch { 5846e5e52638SMatthew G. Knepley MPI_Comm comm; 5847083401c6SMatthew G. Knepley PetscDS dsDef; 5848083401c6SMatthew G. Knepley DMLabel *labelSet; 5849f9244615SMatthew G. Knepley PetscInt dE, Nf = dm->Nf, f, s, Nl, l, Ndef, k; 5850f9244615SMatthew G. Knepley PetscBool doSetup = PETSC_TRUE, flg; 5851e5e52638SMatthew G. Knepley 5852e5e52638SMatthew G. Knepley PetscFunctionBegin; 5853e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 58543ba16761SJacob Faibussowitsch if (!dm->fields) PetscFunctionReturn(PETSC_SUCCESS); 58559566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 58569566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dE)); 5857083401c6SMatthew G. Knepley /* Determine how many regions we have */ 58589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nf, &labelSet)); 5859083401c6SMatthew G. Knepley Nl = 0; 5860083401c6SMatthew G. Knepley Ndef = 0; 5861083401c6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5862083401c6SMatthew G. Knepley DMLabel label = dm->fields[f].label; 5863083401c6SMatthew G. Knepley PetscInt l; 5864083401c6SMatthew G. Knepley 5865f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 5866f918ec44SMatthew G. Knepley /* Move CEED context to discretizations */ 5867f918ec44SMatthew G. Knepley { 5868f918ec44SMatthew G. Knepley PetscClassId id; 5869f918ec44SMatthew G. Knepley 58709566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(dm->fields[f].disc, &id)); 5871f918ec44SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 5872f918ec44SMatthew G. Knepley Ceed ceed; 5873f918ec44SMatthew G. Knepley 58749566063dSJacob Faibussowitsch PetscCall(DMGetCeed(dm, &ceed)); 58759566063dSJacob Faibussowitsch PetscCall(PetscFESetCeed((PetscFE)dm->fields[f].disc, ceed)); 5876f918ec44SMatthew G. Knepley } 5877f918ec44SMatthew G. Knepley } 5878f918ec44SMatthew G. Knepley #endif 58799371c9d4SSatish Balay if (!label) { 58809371c9d4SSatish Balay ++Ndef; 58819371c9d4SSatish Balay continue; 58829371c9d4SSatish Balay } 58839371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 58849371c9d4SSatish Balay if (label == labelSet[l]) break; 5885083401c6SMatthew G. Knepley if (l < Nl) continue; 5886083401c6SMatthew G. Knepley labelSet[Nl++] = label; 5887083401c6SMatthew G. Knepley } 5888083401c6SMatthew G. Knepley /* Create default DS if there are no labels to intersect with */ 588907218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL)); 5890083401c6SMatthew G. Knepley if (!dsDef && Ndef && !Nl) { 5891b3cf3223SMatthew G. Knepley IS fields; 5892b3cf3223SMatthew G. Knepley PetscInt *fld, nf; 5893b3cf3223SMatthew G. Knepley 58949371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 58959371c9d4SSatish Balay if (!dm->fields[f].label) ++nf; 58967a8be351SBarry Smith PetscCheck(nf, comm, PETSC_ERR_PLIB, "All fields have labels, but we are trying to create a default DS"); 58979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 58989371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 58999371c9d4SSatish Balay if (!dm->fields[f].label) fld[nf++] = f; 59009566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 59019566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 59029566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 59039566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 590488f0c812SMatthew G. Knepley 59059566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 590607218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, NULL, fields, dsDef, NULL)); 59079566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 59089566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fields)); 59092df9ee95SMatthew G. Knepley } 591007218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL)); 59119566063dSJacob Faibussowitsch if (dsDef) PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 5912083401c6SMatthew G. Knepley /* Intersect labels with default fields */ 5913083401c6SMatthew G. Knepley if (Ndef && Nl) { 59140122748bSMatthew G. Knepley DM plex; 5915083401c6SMatthew G. Knepley DMLabel cellLabel; 5916083401c6SMatthew G. Knepley IS fieldIS, allcellIS, defcellIS = NULL; 5917083401c6SMatthew G. Knepley PetscInt *fields; 5918083401c6SMatthew G. Knepley const PetscInt *cells; 5919083401c6SMatthew G. Knepley PetscInt depth, nf = 0, n, c; 59200122748bSMatthew G. Knepley 59219566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 59229566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(plex, &depth)); 59239566063dSJacob Faibussowitsch PetscCall(DMGetStratumIS(plex, "dim", depth, &allcellIS)); 59249566063dSJacob Faibussowitsch if (!allcellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &allcellIS)); 59255fedec97SMatthew G. Knepley /* TODO This looks like it only works for one label */ 5926083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 5927083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 5928083401c6SMatthew G. Knepley IS pointIS; 5929083401c6SMatthew G. Knepley 59309566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 59319566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, 1, &pointIS)); 59329566063dSJacob Faibussowitsch PetscCall(ISDifference(allcellIS, pointIS, &defcellIS)); 59339566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 5934083401c6SMatthew G. Knepley } 59359566063dSJacob Faibussowitsch PetscCall(ISDestroy(&allcellIS)); 5936083401c6SMatthew G. Knepley 59379566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "defaultCells", &cellLabel)); 59389566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(defcellIS, &n)); 59399566063dSJacob Faibussowitsch PetscCall(ISGetIndices(defcellIS, &cells)); 59409566063dSJacob Faibussowitsch for (c = 0; c < n; ++c) PetscCall(DMLabelSetValue(cellLabel, cells[c], 1)); 59419566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(defcellIS, &cells)); 59429566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 59439566063dSJacob Faibussowitsch PetscCall(DMPlexLabelComplete(plex, cellLabel)); 5944083401c6SMatthew G. Knepley 59459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ndef, &fields)); 59469371c9d4SSatish Balay for (f = 0; f < Nf; ++f) 59479371c9d4SSatish Balay if (!dm->fields[f].label) fields[nf++] = f; 59489566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fieldIS)); 59499566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fieldIS, "dm_fields_")); 59509566063dSJacob Faibussowitsch PetscCall(ISSetType(fieldIS, ISGENERAL)); 59519566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fieldIS, nf, fields, PETSC_OWN_POINTER)); 5952083401c6SMatthew G. Knepley 59539566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 595407218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, cellLabel, fieldIS, dsDef, NULL)); 59559566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 59569566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&cellLabel)); 59579566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 59589566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fieldIS)); 59599566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 5960083401c6SMatthew G. Knepley } 5961083401c6SMatthew G. Knepley /* Create label DSes 5962083401c6SMatthew G. Knepley - WE ONLY SUPPORT IDENTICAL OR DISJOINT LABELS 5963083401c6SMatthew G. Knepley */ 5964083401c6SMatthew G. Knepley /* TODO Should check that labels are disjoint */ 5965083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 5966083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 596707218a29SMatthew G. Knepley PetscDS ds, dsIn = NULL; 5968083401c6SMatthew G. Knepley IS fields; 5969083401c6SMatthew G. Knepley PetscInt *fld, nf; 5970083401c6SMatthew G. Knepley 59719566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 59729371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59739371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) ++nf; 59749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 59759371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59769371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) fld[nf++] = f; 59779566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 59789566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 59799566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 59809566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 59819566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(ds, dE)); 5982083401c6SMatthew G. Knepley { 5983083401c6SMatthew G. Knepley DMPolytopeType ct; 5984083401c6SMatthew G. Knepley PetscInt lStart, lEnd; 59855fedec97SMatthew G. Knepley PetscBool isCohesiveLocal = PETSC_FALSE, isCohesive; 59860122748bSMatthew G. Knepley 59879566063dSJacob Faibussowitsch PetscCall(DMLabelGetBounds(label, &lStart, &lEnd)); 5988665f567fSMatthew G. Knepley if (lStart >= 0) { 59899566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, lStart, &ct)); 5990412e9a14SMatthew G. Knepley switch (ct) { 5991412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 5992412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 5993412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 5994d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_QUAD_PRISM_TENSOR: 5995d71ae5a4SJacob Faibussowitsch isCohesiveLocal = PETSC_TRUE; 5996d71ae5a4SJacob Faibussowitsch break; 5997d71ae5a4SJacob Faibussowitsch default: 5998d71ae5a4SJacob Faibussowitsch break; 5999412e9a14SMatthew G. Knepley } 6000665f567fSMatthew G. Knepley } 6001462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&isCohesiveLocal, &isCohesive, 1, MPIU_BOOL, MPI_LOR, comm)); 600207218a29SMatthew G. Knepley if (isCohesive) { 600307218a29SMatthew G. Knepley PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsIn)); 600407218a29SMatthew G. Knepley PetscCall(PetscDSSetCoordinateDimension(dsIn, dE)); 600507218a29SMatthew G. Knepley } 60065fedec97SMatthew G. Knepley for (f = 0, nf = 0; f < Nf; ++f) { 60075fedec97SMatthew G. Knepley if (label == dm->fields[f].label || !dm->fields[f].label) { 60085fedec97SMatthew G. Knepley if (label == dm->fields[f].label) { 60099566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, nf, NULL)); 60109566063dSJacob Faibussowitsch PetscCall(PetscDSSetCohesive(ds, nf, isCohesive)); 601107218a29SMatthew G. Knepley if (dsIn) { 601207218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, nf, NULL)); 601307218a29SMatthew G. Knepley PetscCall(PetscDSSetCohesive(dsIn, nf, isCohesive)); 601407218a29SMatthew G. Knepley } 60155fedec97SMatthew G. Knepley } 60165fedec97SMatthew G. Knepley ++nf; 60175fedec97SMatthew G. Knepley } 60185fedec97SMatthew G. Knepley } 6019e5e52638SMatthew G. Knepley } 602007218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, label, fields, ds, dsIn)); 602107218a29SMatthew G. Knepley PetscCall(ISDestroy(&fields)); 60229566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 602307218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dsIn)); 6024e5e52638SMatthew G. Knepley } 60259566063dSJacob Faibussowitsch PetscCall(PetscFree(labelSet)); 6026e5e52638SMatthew G. Knepley /* Set fields in DSes */ 6027083401c6SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 6028083401c6SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 602907218a29SMatthew G. Knepley PetscDS dsIn = dm->probs[s].dsIn; 6030083401c6SMatthew G. Knepley IS fields = dm->probs[s].fields; 6031083401c6SMatthew G. Knepley const PetscInt *fld; 60325fedec97SMatthew G. Knepley PetscInt nf, dsnf; 60335fedec97SMatthew G. Knepley PetscBool isCohesive; 6034e5e52638SMatthew G. Knepley 60359566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsnf)); 60369566063dSJacob Faibussowitsch PetscCall(PetscDSIsCohesive(ds, &isCohesive)); 60379566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(fields, &nf)); 60389566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fields, &fld)); 6039083401c6SMatthew G. Knepley for (f = 0; f < nf; ++f) { 6040083401c6SMatthew G. Knepley PetscObject disc = dm->fields[fld[f]].disc; 60415fedec97SMatthew G. Knepley PetscBool isCohesiveField; 6042e5e52638SMatthew G. Knepley PetscClassId id; 6043e5e52638SMatthew G. Knepley 60445fedec97SMatthew G. Knepley /* Handle DS with no fields */ 60459566063dSJacob Faibussowitsch if (dsnf) PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField)); 60465fedec97SMatthew G. Knepley /* If this is a cohesive cell, then regular fields need the lower dimensional discretization */ 604707218a29SMatthew G. Knepley if (isCohesive) { 604807218a29SMatthew G. Knepley if (!isCohesiveField) { 604907218a29SMatthew G. Knepley PetscObject bdDisc; 605007218a29SMatthew G. Knepley 605107218a29SMatthew G. Knepley PetscCall(PetscFEGetHeightSubspace((PetscFE)disc, 1, (PetscFE *)&bdDisc)); 605207218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(ds, f, bdDisc)); 605307218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, f, disc)); 605407218a29SMatthew G. Knepley } else { 60559566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, f, disc)); 605607218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, f, disc)); 605707218a29SMatthew G. Knepley } 605807218a29SMatthew G. Knepley } else { 605907218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(ds, f, disc)); 606007218a29SMatthew G. Knepley } 6061083401c6SMatthew G. Knepley /* We allow people to have placeholder fields and construct the Section by hand */ 60629566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 6063e5e52638SMatthew G. Knepley if ((id != PETSCFE_CLASSID) && (id != PETSCFV_CLASSID)) doSetup = PETSC_FALSE; 6064e5e52638SMatthew G. Knepley } 60659566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fields, &fld)); 6066e5e52638SMatthew G. Knepley } 6067f9244615SMatthew G. Knepley /* Allow k-jet tabulation */ 60689566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)dm)->prefix, "-dm_ds_jet_degree", &k, &flg)); 6069f9244615SMatthew G. Knepley if (flg) { 60703b4aee56SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 60713b4aee56SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 607207218a29SMatthew G. Knepley PetscDS dsIn = dm->probs[s].dsIn; 60733b4aee56SMatthew G. Knepley PetscInt Nf, f; 60743b4aee56SMatthew G. Knepley 60759566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 607607218a29SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 607707218a29SMatthew G. Knepley PetscCall(PetscDSSetJetDegree(ds, f, k)); 607807218a29SMatthew G. Knepley if (dsIn) PetscCall(PetscDSSetJetDegree(dsIn, f, k)); 607907218a29SMatthew G. Knepley } 60803b4aee56SMatthew G. Knepley } 6081f9244615SMatthew G. Knepley } 6082e5e52638SMatthew G. Knepley /* Setup DSes */ 6083e5e52638SMatthew G. Knepley if (doSetup) { 608407218a29SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 6085cf1363e4SMatthew G. Knepley if (dm->setfromoptionscalled) { 6086cf1363e4SMatthew G. Knepley PetscCall(PetscDSSetFromOptions(dm->probs[s].ds)); 6087cf1363e4SMatthew G. Knepley if (dm->probs[s].dsIn) PetscCall(PetscDSSetFromOptions(dm->probs[s].dsIn)); 6088cf1363e4SMatthew G. Knepley } 608907218a29SMatthew G. Knepley PetscCall(PetscDSSetUp(dm->probs[s].ds)); 609007218a29SMatthew G. Knepley if (dm->probs[s].dsIn) PetscCall(PetscDSSetUp(dm->probs[s].dsIn)); 609107218a29SMatthew G. Knepley } 6092e5e52638SMatthew G. Knepley } 60933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6094e5e52638SMatthew G. Knepley } 6095e5e52638SMatthew G. Knepley 6096e5e52638SMatthew G. Knepley /*@ 6097d2b2dc1eSMatthew G. Knepley DMUseTensorOrder - Use a tensor product closure ordering for the default section 6098d2b2dc1eSMatthew G. Knepley 6099d2b2dc1eSMatthew G. Knepley Input Parameters: 6100d2b2dc1eSMatthew G. Knepley + dm - The DM 6101d2b2dc1eSMatthew G. Knepley - tensor - Flag for tensor order 6102d2b2dc1eSMatthew G. Knepley 6103d2b2dc1eSMatthew G. Knepley Level: developer 6104d2b2dc1eSMatthew G. Knepley 6105d2b2dc1eSMatthew G. Knepley .seealso: `DMPlexSetClosurePermutationTensor()`, `PetscSectionResetClosurePermutation()` 6106d2b2dc1eSMatthew G. Knepley @*/ 6107d2b2dc1eSMatthew G. Knepley PetscErrorCode DMUseTensorOrder(DM dm, PetscBool tensor) 6108d2b2dc1eSMatthew G. Knepley { 6109d2b2dc1eSMatthew G. Knepley PetscInt Nf; 6110d2b2dc1eSMatthew G. Knepley PetscBool reorder = PETSC_TRUE, isPlex; 6111d2b2dc1eSMatthew G. Knepley 6112d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 6113d2b2dc1eSMatthew G. Knepley PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 6114d2b2dc1eSMatthew G. Knepley PetscCall(DMGetNumFields(dm, &Nf)); 6115d2b2dc1eSMatthew G. Knepley for (PetscInt f = 0; f < Nf; ++f) { 6116d2b2dc1eSMatthew G. Knepley PetscObject obj; 6117d2b2dc1eSMatthew G. Knepley PetscClassId id; 6118d2b2dc1eSMatthew G. Knepley 6119d2b2dc1eSMatthew G. Knepley PetscCall(DMGetField(dm, f, NULL, &obj)); 6120d2b2dc1eSMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 6121d2b2dc1eSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 6122d2b2dc1eSMatthew G. Knepley PetscSpace sp; 6123d2b2dc1eSMatthew G. Knepley PetscBool tensor; 6124d2b2dc1eSMatthew G. Knepley 6125d2b2dc1eSMatthew G. Knepley PetscCall(PetscFEGetBasisSpace((PetscFE)obj, &sp)); 6126d2b2dc1eSMatthew G. Knepley PetscCall(PetscSpacePolynomialGetTensor(sp, &tensor)); 6127d2b2dc1eSMatthew G. Knepley reorder = reorder && tensor ? PETSC_TRUE : PETSC_FALSE; 6128d2b2dc1eSMatthew G. Knepley } else reorder = PETSC_FALSE; 6129d2b2dc1eSMatthew G. Knepley } 6130d2b2dc1eSMatthew G. Knepley if (tensor) { 6131d2b2dc1eSMatthew G. Knepley if (reorder && isPlex) PetscCall(DMPlexSetClosurePermutationTensor(dm, PETSC_DETERMINE, NULL)); 6132d2b2dc1eSMatthew G. Knepley } else { 6133d2b2dc1eSMatthew G. Knepley PetscSection s; 6134d2b2dc1eSMatthew G. Knepley 6135d2b2dc1eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm, &s)); 6136d2b2dc1eSMatthew G. Knepley if (s) PetscCall(PetscSectionResetClosurePermutation(s)); 6137d2b2dc1eSMatthew G. Knepley } 6138d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 6139d2b2dc1eSMatthew G. Knepley } 6140d2b2dc1eSMatthew G. Knepley 6141d2b2dc1eSMatthew G. Knepley /*@ 6142bb7acecfSBarry Smith DMComputeExactSolution - Compute the exact solution for a given `DM`, using the `PetscDS` information. 61437f96f943SMatthew G. Knepley 614420f4b53cSBarry Smith Collective 6145f2cacb80SMatthew G. Knepley 61467f96f943SMatthew G. Knepley Input Parameters: 6147bb7acecfSBarry Smith + dm - The `DM` 61487f96f943SMatthew G. Knepley - time - The time 61497f96f943SMatthew G. Knepley 61507f96f943SMatthew G. Knepley Output Parameters: 615120f4b53cSBarry Smith + u - The vector will be filled with exact solution values, or `NULL` 615220f4b53cSBarry Smith - u_t - The vector will be filled with the time derivative of exact solution values, or `NULL` 615320f4b53cSBarry Smith 615420f4b53cSBarry Smith Level: developer 61557f96f943SMatthew G. Knepley 6156bb7acecfSBarry Smith Note: 6157bb7acecfSBarry Smith The user must call `PetscDSSetExactSolution()` before using this routine 61587f96f943SMatthew G. Knepley 61591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscDSSetExactSolution()` 61607f96f943SMatthew G. Knepley @*/ 6161d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeExactSolution(DM dm, PetscReal time, Vec u, Vec u_t) 6162d71ae5a4SJacob Faibussowitsch { 61637f96f943SMatthew G. Knepley PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 61647f96f943SMatthew G. Knepley void **ectxs; 6165f60fa741SMatthew G. Knepley Vec locu, locu_t; 61667f96f943SMatthew G. Knepley PetscInt Nf, Nds, s; 61677f96f943SMatthew G. Knepley 61687f96f943SMatthew G. Knepley PetscFunctionBegin; 6169f2cacb80SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6170f60fa741SMatthew G. Knepley if (u) { 6171f60fa741SMatthew G. Knepley PetscValidHeaderSpecific(u, VEC_CLASSID, 3); 6172f60fa741SMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &locu)); 6173f60fa741SMatthew G. Knepley PetscCall(VecSet(locu, 0.)); 6174f60fa741SMatthew G. Knepley } 6175f60fa741SMatthew G. Knepley if (u_t) { 6176f60fa741SMatthew G. Knepley PetscValidHeaderSpecific(u_t, VEC_CLASSID, 4); 6177f60fa741SMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &locu_t)); 6178f60fa741SMatthew G. Knepley PetscCall(VecSet(locu_t, 0.)); 6179f60fa741SMatthew G. Knepley } 61809566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 61819566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(Nf, &exacts, Nf, &ectxs)); 61829566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 61837f96f943SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 61847f96f943SMatthew G. Knepley PetscDS ds; 61857f96f943SMatthew G. Knepley DMLabel label; 61867f96f943SMatthew G. Knepley IS fieldIS; 61877f96f943SMatthew G. Knepley const PetscInt *fields, id = 1; 61887f96f943SMatthew G. Knepley PetscInt dsNf, f; 61897f96f943SMatthew G. Knepley 619007218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 61919566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 61929566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fieldIS, &fields)); 61939566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 61949566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6195f2cacb80SMatthew G. Knepley if (u) { 6196f60fa741SMatthew G. Knepley for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolution(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]])); 6197f60fa741SMatthew G. Knepley if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu)); 6198f60fa741SMatthew G. Knepley else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu)); 61997f96f943SMatthew G. Knepley } 6200f2cacb80SMatthew G. Knepley if (u_t) { 62019566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 62029566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6203f60fa741SMatthew G. Knepley for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolutionTimeDerivative(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]])); 6204f60fa741SMatthew G. Knepley if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu_t)); 6205f60fa741SMatthew G. Knepley else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu_t)); 6206f2cacb80SMatthew G. Knepley } 62079566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fieldIS, &fields)); 6208f2cacb80SMatthew G. Knepley } 6209f2cacb80SMatthew G. Knepley if (u) { 62109566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution")); 62119566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u, "exact_")); 6212f2cacb80SMatthew G. Knepley } 6213f2cacb80SMatthew G. Knepley if (u_t) { 62149566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution Time Derivative")); 62159566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u_t, "exact_t_")); 6216f2cacb80SMatthew G. Knepley } 62179566063dSJacob Faibussowitsch PetscCall(PetscFree2(exacts, ectxs)); 6218f60fa741SMatthew G. Knepley if (u) { 6219f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, locu, INSERT_ALL_VALUES, u)); 6220f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, locu, INSERT_ALL_VALUES, u)); 6221f60fa741SMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &locu)); 6222f60fa741SMatthew G. Knepley } 6223f60fa741SMatthew G. Knepley if (u_t) { 6224f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, locu_t, INSERT_ALL_VALUES, u_t)); 6225f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, locu_t, INSERT_ALL_VALUES, u_t)); 6226f60fa741SMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &locu_t)); 6227f60fa741SMatthew G. Knepley } 62283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 62297f96f943SMatthew G. Knepley } 62307f96f943SMatthew G. Knepley 6231bb4b53efSMatthew G. Knepley static PetscErrorCode DMTransferDS_Internal(DM dm, DMLabel label, IS fields, PetscInt minDegree, PetscInt maxDegree, PetscDS ds, PetscDS dsIn) 6232d71ae5a4SJacob Faibussowitsch { 623307218a29SMatthew G. Knepley PetscDS dsNew, dsInNew = NULL; 623445480ffeSMatthew G. Knepley 623545480ffeSMatthew G. Knepley PetscFunctionBegin; 62369566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)ds), &dsNew)); 6237bb4b53efSMatthew G. Knepley PetscCall(PetscDSCopy(ds, minDegree, maxDegree, dm, dsNew)); 623807218a29SMatthew G. Knepley if (dsIn) { 623907218a29SMatthew G. Knepley PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)dsIn), &dsInNew)); 6240bb4b53efSMatthew G. Knepley PetscCall(PetscDSCopy(dsIn, minDegree, maxDegree, dm, dsInNew)); 624145480ffeSMatthew G. Knepley } 624207218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, label, fields, dsNew, dsInNew)); 62439566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsNew)); 624407218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dsInNew)); 62453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 624645480ffeSMatthew G. Knepley } 624745480ffeSMatthew G. Knepley 62487f96f943SMatthew G. Knepley /*@ 6249bb7acecfSBarry Smith DMCopyDS - Copy the discrete systems for the `DM` into another `DM` 6250e5e52638SMatthew G. Knepley 625120f4b53cSBarry Smith Collective 6252e5e52638SMatthew G. Knepley 6253bb4b53efSMatthew G. Knepley Input Parameters: 6254bb4b53efSMatthew G. Knepley + dm - The `DM` 6255bb4b53efSMatthew G. Knepley . minDegree - Minimum degree for a discretization, or `PETSC_DETERMINE` for no limit 6256bb4b53efSMatthew G. Knepley - maxDegree - Maximum degree for a discretization, or `PETSC_DETERMINE` for no limit 6257e5e52638SMatthew G. Knepley 6258e5e52638SMatthew G. Knepley Output Parameter: 6259bb7acecfSBarry Smith . newdm - The `DM` 6260e5e52638SMatthew G. Knepley 6261e5e52638SMatthew G. Knepley Level: advanced 6262e5e52638SMatthew G. Knepley 62631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 6264e5e52638SMatthew G. Knepley @*/ 6265bb4b53efSMatthew G. Knepley PetscErrorCode DMCopyDS(DM dm, PetscInt minDegree, PetscInt maxDegree, DM newdm) 6266d71ae5a4SJacob Faibussowitsch { 6267e5e52638SMatthew G. Knepley PetscInt Nds, s; 6268e5e52638SMatthew G. Knepley 6269e5e52638SMatthew G. Knepley PetscFunctionBegin; 62703ba16761SJacob Faibussowitsch if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS); 62719566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 62729566063dSJacob Faibussowitsch PetscCall(DMClearDS(newdm)); 6273e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 6274e5e52638SMatthew G. Knepley DMLabel label; 6275b3cf3223SMatthew G. Knepley IS fields; 627607218a29SMatthew G. Knepley PetscDS ds, dsIn, newds; 6277783e2ec8SMatthew G. Knepley PetscInt Nbd, bd; 6278e5e52638SMatthew G. Knepley 627907218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fields, &ds, &dsIn)); 6280b8025e53SMatthew G. Knepley /* TODO: We need to change all keys from labels in the old DM to labels in the new DM */ 6281bb4b53efSMatthew G. Knepley PetscCall(DMTransferDS_Internal(newdm, label, fields, minDegree, maxDegree, ds, dsIn)); 6282d5b43468SJose E. Roman /* Complete new labels in the new DS */ 628307218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(newdm, label, NULL, &newds, NULL)); 62849566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(newds, &Nbd)); 6285783e2ec8SMatthew G. Knepley for (bd = 0; bd < Nbd; ++bd) { 6286b8025e53SMatthew G. Knepley PetscWeakForm wf; 628745480ffeSMatthew G. Knepley DMLabel label; 6288783e2ec8SMatthew G. Knepley PetscInt field; 6289783e2ec8SMatthew G. Knepley 62909566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(newds, bd, &wf, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 62919566063dSJacob Faibussowitsch PetscCall(PetscWeakFormReplaceLabel(wf, label)); 6292783e2ec8SMatthew G. Knepley } 6293e5e52638SMatthew G. Knepley } 6294799db056SMatthew G. Knepley PetscCall(DMCompleteBCLabels_Internal(newdm)); 62953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6296e5e52638SMatthew G. Knepley } 6297e5e52638SMatthew G. Knepley 6298e5e52638SMatthew G. Knepley /*@ 6299bb7acecfSBarry Smith DMCopyDisc - Copy the fields and discrete systems for the `DM` into another `DM` 6300e5e52638SMatthew G. Knepley 630120f4b53cSBarry Smith Collective 6302e5e52638SMatthew G. Knepley 6303e5e52638SMatthew G. Knepley Input Parameter: 6304bb7acecfSBarry Smith . dm - The `DM` 6305e5e52638SMatthew G. Knepley 6306e5e52638SMatthew G. Knepley Output Parameter: 6307bb7acecfSBarry Smith . newdm - The `DM` 6308e5e52638SMatthew G. Knepley 6309e5e52638SMatthew G. Knepley Level: advanced 6310e5e52638SMatthew G. Knepley 631173ff1848SBarry Smith Developer Note: 6312bb7acecfSBarry Smith Really ugly name, nothing in PETSc is called a `Disc` plus it is an ugly abbreviation 6313bb7acecfSBarry Smith 63141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMCopyDS()` 6315e5e52638SMatthew G. Knepley @*/ 6316d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDisc(DM dm, DM newdm) 6317d71ae5a4SJacob Faibussowitsch { 6318e5e52638SMatthew G. Knepley PetscFunctionBegin; 6319bb4b53efSMatthew G. Knepley PetscCall(DMCopyFields(dm, PETSC_DETERMINE, PETSC_DETERMINE, newdm)); 6320bb4b53efSMatthew G. Knepley PetscCall(DMCopyDS(dm, PETSC_DETERMINE, PETSC_DETERMINE, newdm)); 63213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6322e5e52638SMatthew G. Knepley } 6323e5e52638SMatthew G. Knepley 6324c73cfb54SMatthew G. Knepley /*@ 6325bb7acecfSBarry Smith DMGetDimension - Return the topological dimension of the `DM` 6326c73cfb54SMatthew G. Knepley 632720f4b53cSBarry Smith Not Collective 6328c73cfb54SMatthew G. Knepley 6329c73cfb54SMatthew G. Knepley Input Parameter: 6330bb7acecfSBarry Smith . dm - The `DM` 6331c73cfb54SMatthew G. Knepley 6332c73cfb54SMatthew G. Knepley Output Parameter: 6333c73cfb54SMatthew G. Knepley . dim - The topological dimension 6334c73cfb54SMatthew G. Knepley 6335c73cfb54SMatthew G. Knepley Level: beginner 6336c73cfb54SMatthew G. Knepley 63371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDimension()`, `DMCreate()` 6338c73cfb54SMatthew G. Knepley @*/ 6339d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimension(DM dm, PetscInt *dim) 6340d71ae5a4SJacob Faibussowitsch { 6341c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6342c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 63434f572ea9SToby Isaac PetscAssertPointer(dim, 2); 6344c73cfb54SMatthew G. Knepley *dim = dm->dim; 63453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6346c73cfb54SMatthew G. Knepley } 6347c73cfb54SMatthew G. Knepley 6348c73cfb54SMatthew G. Knepley /*@ 6349bb7acecfSBarry Smith DMSetDimension - Set the topological dimension of the `DM` 6350c73cfb54SMatthew G. Knepley 635120f4b53cSBarry Smith Collective 6352c73cfb54SMatthew G. Knepley 6353c73cfb54SMatthew G. Knepley Input Parameters: 6354bb7acecfSBarry Smith + dm - The `DM` 6355c73cfb54SMatthew G. Knepley - dim - The topological dimension 6356c73cfb54SMatthew G. Knepley 6357c73cfb54SMatthew G. Knepley Level: beginner 6358c73cfb54SMatthew G. Knepley 63591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDimension()`, `DMCreate()` 6360c73cfb54SMatthew G. Knepley @*/ 6361d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDimension(DM dm, PetscInt dim) 6362d71ae5a4SJacob Faibussowitsch { 6363e5e52638SMatthew G. Knepley PetscDS ds; 636445480ffeSMatthew G. Knepley PetscInt Nds, n; 6365f17e8794SMatthew G. Knepley 6366c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6367c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6368c73cfb54SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, dim, 2); 6369c73cfb54SMatthew G. Knepley dm->dim = dim; 6370d17bd122SMatthew G. Knepley if (dm->dim >= 0) { 63719566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 637245480ffeSMatthew G. Knepley for (n = 0; n < Nds; ++n) { 637307218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, n, NULL, NULL, &ds, NULL)); 63749566063dSJacob Faibussowitsch if (ds->dimEmbed < 0) PetscCall(PetscDSSetCoordinateDimension(ds, dim)); 637545480ffeSMatthew G. Knepley } 6376d17bd122SMatthew G. Knepley } 63773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6378c73cfb54SMatthew G. Knepley } 6379c73cfb54SMatthew G. Knepley 6380793f3fe5SMatthew G. Knepley /*@ 6381793f3fe5SMatthew G. Knepley DMGetDimPoints - Get the half-open interval for all points of a given dimension 6382793f3fe5SMatthew G. Knepley 638320f4b53cSBarry Smith Collective 6384793f3fe5SMatthew G. Knepley 6385793f3fe5SMatthew G. Knepley Input Parameters: 6386bb7acecfSBarry Smith + dm - the `DM` 6387793f3fe5SMatthew G. Knepley - dim - the dimension 6388793f3fe5SMatthew G. Knepley 6389793f3fe5SMatthew G. Knepley Output Parameters: 6390793f3fe5SMatthew G. Knepley + pStart - The first point of the given dimension 6391aa049354SPatrick Sanan - pEnd - The first point following points of the given dimension 6392793f3fe5SMatthew G. Knepley 639320f4b53cSBarry Smith Level: intermediate 639420f4b53cSBarry Smith 6395793f3fe5SMatthew G. Knepley Note: 6396793f3fe5SMatthew G. Knepley The points are vertices in the Hasse diagram encoding the topology. This is explained in 6397a8d69d7bSBarry Smith https://arxiv.org/abs/0908.4427. If no points exist of this dimension in the storage scheme, 6398793f3fe5SMatthew G. Knepley then the interval is empty. 6399793f3fe5SMatthew G. Knepley 64001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPLEX`, `DMPlexGetDepthStratum()`, `DMPlexGetHeightStratum()` 6401793f3fe5SMatthew G. Knepley @*/ 6402d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimPoints(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd) 6403d71ae5a4SJacob Faibussowitsch { 6404793f3fe5SMatthew G. Knepley PetscInt d; 6405793f3fe5SMatthew G. Knepley 6406793f3fe5SMatthew G. Knepley PetscFunctionBegin; 6407793f3fe5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64089566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &d)); 64097a8be351SBarry Smith PetscCheck((dim >= 0) && (dim <= d), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %" PetscInt_FMT, dim); 6410dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getdimpoints, dim, pStart, pEnd); 64113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6412793f3fe5SMatthew G. Knepley } 6413793f3fe5SMatthew G. Knepley 64146636e97aSMatthew G Knepley /*@ 6415bb7acecfSBarry Smith DMGetOutputDM - Retrieve the `DM` associated with the layout for output 6416f4d763aaSMatthew G. Knepley 641720f4b53cSBarry Smith Collective 64188f700142SStefano Zampini 6419f4d763aaSMatthew G. Knepley Input Parameter: 6420bb7acecfSBarry Smith . dm - The original `DM` 6421f4d763aaSMatthew G. Knepley 6422f4d763aaSMatthew G. Knepley Output Parameter: 6423bb7acecfSBarry Smith . odm - The `DM` which provides the layout for output 6424f4d763aaSMatthew G. Knepley 6425f4d763aaSMatthew G. Knepley Level: intermediate 6426f4d763aaSMatthew G. Knepley 6427bb7acecfSBarry Smith Note: 6428bb7acecfSBarry Smith In some situations the vector obtained with `DMCreateGlobalVector()` excludes points for degrees of freedom that are associated with fixed (Dirichelet) boundary 6429bb7acecfSBarry Smith conditions since the algebraic solver does not solve for those variables. The output `DM` includes these excluded points and its global vector contains the 6430bb7acecfSBarry Smith locations for those dof so that they can be output to a file or other viewer along with the unconstrained dof. 6431bb7acecfSBarry Smith 64321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`, `DMGetGlobalSection()`, `DMCreateGlobalVector()`, `PetscSectionHasConstraints()`, `DMSetGlobalSection()` 6433f4d763aaSMatthew G. Knepley @*/ 6434d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputDM(DM dm, DM *odm) 6435d71ae5a4SJacob Faibussowitsch { 6436c26acbdeSMatthew G. Knepley PetscSection section; 6437eb9d3e4dSMatthew G. Knepley IS perm; 6438eb9d3e4dSMatthew G. Knepley PetscBool hasConstraints, newDM, gnewDM; 643992a26154SJames Wright PetscInt num_face_sfs = 0; 644014f150ffSMatthew G. Knepley 644114f150ffSMatthew G. Knepley PetscFunctionBegin; 644214f150ffSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64434f572ea9SToby Isaac PetscAssertPointer(odm, 2); 64449566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 64459566063dSJacob Faibussowitsch PetscCall(PetscSectionHasConstraints(section, &hasConstraints)); 6446eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionGetPermutation(section, &perm)); 644792a26154SJames Wright PetscCall(DMPlexGetIsoperiodicFaceSF(dm, &num_face_sfs, NULL)); 644892a26154SJames Wright newDM = hasConstraints || perm || (num_face_sfs > 0) ? PETSC_TRUE : PETSC_FALSE; 6449462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&newDM, &gnewDM, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm))); 6450eb9d3e4dSMatthew G. Knepley if (!gnewDM) { 6451c26acbdeSMatthew G. Knepley *odm = dm; 64523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6453c26acbdeSMatthew G. Knepley } 645414f150ffSMatthew G. Knepley if (!dm->dmBC) { 6455c26acbdeSMatthew G. Knepley PetscSection newSection, gsection; 645692a26154SJames Wright PetscSF sf, sfNatural; 6457eb9d3e4dSMatthew G. Knepley PetscBool usePerm = dm->ignorePermOutput ? PETSC_FALSE : PETSC_TRUE; 645814f150ffSMatthew G. Knepley 64599566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->dmBC)); 64609566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, dm->dmBC)); 64619566063dSJacob Faibussowitsch PetscCall(PetscSectionClone(section, &newSection)); 64629566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm->dmBC, newSection)); 64639566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newSection)); 646492a26154SJames Wright PetscCall(DMGetNaturalSF(dm, &sfNatural)); 646592a26154SJames Wright PetscCall(DMSetNaturalSF(dm->dmBC, sfNatural)); 64669566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm->dmBC, &sf)); 6467eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionCreateGlobalSection(section, sf, usePerm, PETSC_TRUE, PETSC_FALSE, &gsection)); 64689566063dSJacob Faibussowitsch PetscCall(DMSetGlobalSection(dm->dmBC, gsection)); 64699566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&gsection)); 647014f150ffSMatthew G. Knepley } 647114f150ffSMatthew G. Knepley *odm = dm->dmBC; 64723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 647314f150ffSMatthew G. Knepley } 6474f4d763aaSMatthew G. Knepley 6475f4d763aaSMatthew G. Knepley /*@ 6476cdb7a50dSMatthew G. Knepley DMGetOutputSequenceNumber - Retrieve the sequence number/value for output 6477f4d763aaSMatthew G. Knepley 6478f4d763aaSMatthew G. Knepley Input Parameter: 6479bb7acecfSBarry Smith . dm - The original `DM` 6480f4d763aaSMatthew G. Knepley 6481cdb7a50dSMatthew G. Knepley Output Parameters: 6482cdb7a50dSMatthew G. Knepley + num - The output sequence number 6483cdb7a50dSMatthew G. Knepley - val - The output sequence value 6484f4d763aaSMatthew G. Knepley 6485f4d763aaSMatthew G. Knepley Level: intermediate 6486f4d763aaSMatthew G. Knepley 6487bb7acecfSBarry Smith Note: 6488bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6489bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6490bb7acecfSBarry Smith 649173ff1848SBarry Smith Developer Note: 6492bb7acecfSBarry Smith The `DM` serves as a convenient place to store the current iteration value. The iteration is not 6493bb7acecfSBarry Smith not directly related to the `DM`. 6494f4d763aaSMatthew G. Knepley 64951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()` 6496f4d763aaSMatthew G. Knepley @*/ 6497d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputSequenceNumber(DM dm, PetscInt *num, PetscReal *val) 6498d71ae5a4SJacob Faibussowitsch { 6499f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6500f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 65019371c9d4SSatish Balay if (num) { 65024f572ea9SToby Isaac PetscAssertPointer(num, 2); 65039371c9d4SSatish Balay *num = dm->outputSequenceNum; 65049371c9d4SSatish Balay } 65059371c9d4SSatish Balay if (val) { 65064f572ea9SToby Isaac PetscAssertPointer(val, 3); 65079371c9d4SSatish Balay *val = dm->outputSequenceVal; 65089371c9d4SSatish Balay } 65093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6510f4d763aaSMatthew G. Knepley } 6511f4d763aaSMatthew G. Knepley 6512f4d763aaSMatthew G. Knepley /*@ 6513cdb7a50dSMatthew G. Knepley DMSetOutputSequenceNumber - Set the sequence number/value for output 6514f4d763aaSMatthew G. Knepley 6515f4d763aaSMatthew G. Knepley Input Parameters: 6516bb7acecfSBarry Smith + dm - The original `DM` 6517cdb7a50dSMatthew G. Knepley . num - The output sequence number 6518cdb7a50dSMatthew G. Knepley - val - The output sequence value 6519f4d763aaSMatthew G. Knepley 6520f4d763aaSMatthew G. Knepley Level: intermediate 6521f4d763aaSMatthew G. Knepley 6522bb7acecfSBarry Smith Note: 6523bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6524bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6525f4d763aaSMatthew G. Knepley 65261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()` 6527f4d763aaSMatthew G. Knepley @*/ 6528d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOutputSequenceNumber(DM dm, PetscInt num, PetscReal val) 6529d71ae5a4SJacob Faibussowitsch { 6530f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6531f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6532f4d763aaSMatthew G. Knepley dm->outputSequenceNum = num; 6533cdb7a50dSMatthew G. Knepley dm->outputSequenceVal = val; 65343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6535cdb7a50dSMatthew G. Knepley } 6536cdb7a50dSMatthew G. Knepley 65375d83a8b1SBarry Smith /*@ 6538bb7acecfSBarry Smith DMOutputSequenceLoad - Retrieve the sequence value from a `PetscViewer` 6539cdb7a50dSMatthew G. Knepley 6540cdb7a50dSMatthew G. Knepley Input Parameters: 6541bb7acecfSBarry Smith + dm - The original `DM` 6542b2033f5dSMatthew G. Knepley . viewer - The `PetscViewer` to get it from 6543cdb7a50dSMatthew G. Knepley . name - The sequence name 6544cdb7a50dSMatthew G. Knepley - num - The output sequence number 6545cdb7a50dSMatthew G. Knepley 6546cdb7a50dSMatthew G. Knepley Output Parameter: 6547cdb7a50dSMatthew G. Knepley . val - The output sequence value 6548cdb7a50dSMatthew G. Knepley 6549cdb7a50dSMatthew G. Knepley Level: intermediate 6550cdb7a50dSMatthew G. Knepley 6551bb7acecfSBarry Smith Note: 6552bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6553bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6554bb7acecfSBarry Smith 655573ff1848SBarry Smith Developer Note: 6556bb7acecfSBarry Smith It is unclear at the user API level why a `DM` is needed as input 6557cdb7a50dSMatthew G. Knepley 65581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()` 6559cdb7a50dSMatthew G. Knepley @*/ 6560b2033f5dSMatthew G. Knepley PetscErrorCode DMOutputSequenceLoad(DM dm, PetscViewer viewer, const char name[], PetscInt num, PetscReal *val) 6561d71ae5a4SJacob Faibussowitsch { 6562cdb7a50dSMatthew G. Knepley PetscBool ishdf5; 6563cdb7a50dSMatthew G. Knepley 6564cdb7a50dSMatthew G. Knepley PetscFunctionBegin; 6565cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6566cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 6567b2033f5dSMatthew G. Knepley PetscAssertPointer(name, 3); 65684f572ea9SToby Isaac PetscAssertPointer(val, 5); 65699566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 6570cdb7a50dSMatthew G. Knepley if (ishdf5) { 6571cdb7a50dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 6572cdb7a50dSMatthew G. Knepley PetscScalar value; 6573cdb7a50dSMatthew G. Knepley 65749566063dSJacob Faibussowitsch PetscCall(DMSequenceLoad_HDF5_Internal(dm, name, num, &value, viewer)); 65754aeb217fSMatthew G. Knepley *val = PetscRealPart(value); 6576cdb7a50dSMatthew G. Knepley #endif 6577cdb7a50dSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()"); 65783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6579f4d763aaSMatthew G. Knepley } 65808e4ac7eaSMatthew G. Knepley 65818e4ac7eaSMatthew G. Knepley /*@ 6582b2033f5dSMatthew G. Knepley DMGetOutputSequenceLength - Retrieve the number of sequence values from a `PetscViewer` 6583b2033f5dSMatthew G. Knepley 6584b2033f5dSMatthew G. Knepley Input Parameters: 6585b2033f5dSMatthew G. Knepley + dm - The original `DM` 6586b2033f5dSMatthew G. Knepley . viewer - The `PetscViewer` to get it from 6587b2033f5dSMatthew G. Knepley - name - The sequence name 6588b2033f5dSMatthew G. Knepley 6589b2033f5dSMatthew G. Knepley Output Parameter: 6590b2033f5dSMatthew G. Knepley . len - The length of the output sequence 6591b2033f5dSMatthew G. Knepley 6592b2033f5dSMatthew G. Knepley Level: intermediate 6593b2033f5dSMatthew G. Knepley 6594b2033f5dSMatthew G. Knepley Note: 6595b2033f5dSMatthew G. Knepley This is intended for output that should appear in sequence, for instance 6596b2033f5dSMatthew G. Knepley a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6597b2033f5dSMatthew G. Knepley 6598b2033f5dSMatthew G. Knepley Developer Note: 6599b2033f5dSMatthew G. Knepley It is unclear at the user API level why a `DM` is needed as input 6600b2033f5dSMatthew G. Knepley 6601b2033f5dSMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()` 6602b2033f5dSMatthew G. Knepley @*/ 6603b2033f5dSMatthew G. Knepley PetscErrorCode DMGetOutputSequenceLength(DM dm, PetscViewer viewer, const char name[], PetscInt *len) 6604b2033f5dSMatthew G. Knepley { 6605b2033f5dSMatthew G. Knepley PetscBool ishdf5; 6606b2033f5dSMatthew G. Knepley 6607b2033f5dSMatthew G. Knepley PetscFunctionBegin; 6608b2033f5dSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6609b2033f5dSMatthew G. Knepley PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 6610b2033f5dSMatthew G. Knepley PetscAssertPointer(name, 3); 6611b2033f5dSMatthew G. Knepley PetscAssertPointer(len, 4); 6612b2033f5dSMatthew G. Knepley PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 6613b2033f5dSMatthew G. Knepley if (ishdf5) { 6614b2033f5dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 6615b2033f5dSMatthew G. Knepley PetscCall(DMSequenceGetLength_HDF5_Internal(dm, name, len, viewer)); 6616b2033f5dSMatthew G. Knepley #endif 6617b2033f5dSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()"); 6618b2033f5dSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 6619b2033f5dSMatthew G. Knepley } 6620b2033f5dSMatthew G. Knepley 6621b2033f5dSMatthew G. Knepley /*@ 6622bb7acecfSBarry Smith DMGetUseNatural - Get the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 66238e4ac7eaSMatthew G. Knepley 662420f4b53cSBarry Smith Not Collective 66258e4ac7eaSMatthew G. Knepley 66268e4ac7eaSMatthew G. Knepley Input Parameter: 6627bb7acecfSBarry Smith . dm - The `DM` 66288e4ac7eaSMatthew G. Knepley 66298e4ac7eaSMatthew G. Knepley Output Parameter: 6630bb7acecfSBarry Smith . useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 66318e4ac7eaSMatthew G. Knepley 66328e4ac7eaSMatthew G. Knepley Level: beginner 66338e4ac7eaSMatthew G. Knepley 66341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetUseNatural()`, `DMCreate()` 66358e4ac7eaSMatthew G. Knepley @*/ 6636d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetUseNatural(DM dm, PetscBool *useNatural) 6637d71ae5a4SJacob Faibussowitsch { 66388e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 66398e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 66404f572ea9SToby Isaac PetscAssertPointer(useNatural, 2); 66418e4ac7eaSMatthew G. Knepley *useNatural = dm->useNatural; 66423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 66438e4ac7eaSMatthew G. Knepley } 66448e4ac7eaSMatthew G. Knepley 66458e4ac7eaSMatthew G. Knepley /*@ 6646bb7acecfSBarry Smith DMSetUseNatural - Set the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 66478e4ac7eaSMatthew G. Knepley 664820f4b53cSBarry Smith Collective 66498e4ac7eaSMatthew G. Knepley 66508e4ac7eaSMatthew G. Knepley Input Parameters: 6651bb7acecfSBarry Smith + dm - The `DM` 6652bb7acecfSBarry Smith - useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 66538e4ac7eaSMatthew G. Knepley 665473ff1848SBarry Smith Level: beginner 665573ff1848SBarry Smith 6656bb7acecfSBarry Smith Note: 6657bb7acecfSBarry Smith This also causes the map to be build after `DMCreateSubDM()` and `DMCreateSuperDM()` 66585d3b26e6SMatthew G. Knepley 66591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetUseNatural()`, `DMCreate()`, `DMPlexDistribute()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 66608e4ac7eaSMatthew G. Knepley @*/ 6661d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUseNatural(DM dm, PetscBool useNatural) 6662d71ae5a4SJacob Faibussowitsch { 66638e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 66648e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 66658833efb5SBlaise Bourdin PetscValidLogicalCollectiveBool(dm, useNatural, 2); 66668e4ac7eaSMatthew G. Knepley dm->useNatural = useNatural; 66673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 66688e4ac7eaSMatthew G. Knepley } 6669c58f1c22SToby Isaac 6670cc4c1da9SBarry Smith /*@ 6671bb7acecfSBarry Smith DMCreateLabel - Create a label of the given name if it does not already exist in the `DM` 6672c58f1c22SToby Isaac 6673c58f1c22SToby Isaac Not Collective 6674c58f1c22SToby Isaac 6675c58f1c22SToby Isaac Input Parameters: 6676bb7acecfSBarry Smith + dm - The `DM` object 6677c58f1c22SToby Isaac - name - The label name 6678c58f1c22SToby Isaac 6679c58f1c22SToby Isaac Level: intermediate 6680c58f1c22SToby Isaac 66811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6682c58f1c22SToby Isaac @*/ 6683d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabel(DM dm, const char name[]) 6684d71ae5a4SJacob Faibussowitsch { 66855d80c0bfSVaclav Hapla PetscBool flg; 66865d80c0bfSVaclav Hapla DMLabel label; 6687c58f1c22SToby Isaac 6688c58f1c22SToby Isaac PetscFunctionBegin; 6689c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 66904f572ea9SToby Isaac PetscAssertPointer(name, 2); 66919566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 6692c58f1c22SToby Isaac if (!flg) { 66939566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 66949566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 66959566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 6696c58f1c22SToby Isaac } 66973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6698c58f1c22SToby Isaac } 6699c58f1c22SToby Isaac 6700cc4c1da9SBarry Smith /*@ 6701bb7acecfSBarry Smith DMCreateLabelAtIndex - Create a label of the given name at the given index. If it already exists in the `DM`, move it to this index. 67020fdc7489SMatthew Knepley 67030fdc7489SMatthew Knepley Not Collective 67040fdc7489SMatthew Knepley 67050fdc7489SMatthew Knepley Input Parameters: 6706bb7acecfSBarry Smith + dm - The `DM` object 67070fdc7489SMatthew Knepley . l - The index for the label 67080fdc7489SMatthew Knepley - name - The label name 67090fdc7489SMatthew Knepley 67100fdc7489SMatthew Knepley Level: intermediate 67110fdc7489SMatthew Knepley 67121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateLabel()`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 67130fdc7489SMatthew Knepley @*/ 6714d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabelAtIndex(DM dm, PetscInt l, const char name[]) 6715d71ae5a4SJacob Faibussowitsch { 67160fdc7489SMatthew Knepley DMLabelLink orig, prev = NULL; 67170fdc7489SMatthew Knepley DMLabel label; 67180fdc7489SMatthew Knepley PetscInt Nl, m; 67190fdc7489SMatthew Knepley PetscBool flg, match; 67200fdc7489SMatthew Knepley const char *lname; 67210fdc7489SMatthew Knepley 67220fdc7489SMatthew Knepley PetscFunctionBegin; 67230fdc7489SMatthew Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67244f572ea9SToby Isaac PetscAssertPointer(name, 3); 67259566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 67260fdc7489SMatthew Knepley if (!flg) { 67279566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 67289566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 67299566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 67300fdc7489SMatthew Knepley } 67319566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 673263a3b9bcSJacob Faibussowitsch PetscCheck(l < Nl, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label index %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", l, Nl); 67330fdc7489SMatthew Knepley for (m = 0, orig = dm->labels; m < Nl; ++m, prev = orig, orig = orig->next) { 67349566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)orig->label, &lname)); 67359566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &match)); 67360fdc7489SMatthew Knepley if (match) break; 67370fdc7489SMatthew Knepley } 67383ba16761SJacob Faibussowitsch if (m == l) PetscFunctionReturn(PETSC_SUCCESS); 67390fdc7489SMatthew Knepley if (!m) dm->labels = orig->next; 67400fdc7489SMatthew Knepley else prev->next = orig->next; 67410fdc7489SMatthew Knepley if (!l) { 67420fdc7489SMatthew Knepley orig->next = dm->labels; 67430fdc7489SMatthew Knepley dm->labels = orig; 67440fdc7489SMatthew Knepley } else { 6745fbccb6d4SPierre Jolivet for (m = 0, prev = dm->labels; m < l - 1; ++m, prev = prev->next); 67460fdc7489SMatthew Knepley orig->next = prev->next; 67470fdc7489SMatthew Knepley prev->next = orig; 67480fdc7489SMatthew Knepley } 67493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 67500fdc7489SMatthew Knepley } 67510fdc7489SMatthew Knepley 6752cc4c1da9SBarry Smith /*@ 6753bb7acecfSBarry Smith DMGetLabelValue - Get the value in a `DMLabel` for the given point, with -1 as the default 6754c58f1c22SToby Isaac 6755c58f1c22SToby Isaac Not Collective 6756c58f1c22SToby Isaac 6757c58f1c22SToby Isaac Input Parameters: 6758bb7acecfSBarry Smith + dm - The `DM` object 6759c58f1c22SToby Isaac . name - The label name 6760c58f1c22SToby Isaac - point - The mesh point 6761c58f1c22SToby Isaac 6762c58f1c22SToby Isaac Output Parameter: 6763c58f1c22SToby Isaac . value - The label value for this point, or -1 if the point is not in the label 6764c58f1c22SToby Isaac 6765c58f1c22SToby Isaac Level: beginner 6766c58f1c22SToby Isaac 67671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6768c58f1c22SToby Isaac @*/ 6769d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelValue(DM dm, const char name[], PetscInt point, PetscInt *value) 6770d71ae5a4SJacob Faibussowitsch { 6771c58f1c22SToby Isaac DMLabel label; 6772c58f1c22SToby Isaac 6773c58f1c22SToby Isaac PetscFunctionBegin; 6774c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67754f572ea9SToby Isaac PetscAssertPointer(name, 2); 67769566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 67777a8be351SBarry Smith PetscCheck(label, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No label named %s was found", name); 67789566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, value)); 67793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6780c58f1c22SToby Isaac } 6781c58f1c22SToby Isaac 6782cc4c1da9SBarry Smith /*@ 6783bb7acecfSBarry Smith DMSetLabelValue - Add a point to a `DMLabel` with given value 6784c58f1c22SToby Isaac 6785c58f1c22SToby Isaac Not Collective 6786c58f1c22SToby Isaac 6787c58f1c22SToby Isaac Input Parameters: 6788bb7acecfSBarry Smith + dm - The `DM` object 6789c58f1c22SToby Isaac . name - The label name 6790c58f1c22SToby Isaac . point - The mesh point 6791c58f1c22SToby Isaac - value - The label value for this point 6792c58f1c22SToby Isaac 6793c58f1c22SToby Isaac Output Parameter: 6794c58f1c22SToby Isaac 6795c58f1c22SToby Isaac Level: beginner 6796c58f1c22SToby Isaac 67971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelSetValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 6798c58f1c22SToby Isaac @*/ 6799d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6800d71ae5a4SJacob Faibussowitsch { 6801c58f1c22SToby Isaac DMLabel label; 6802c58f1c22SToby Isaac 6803c58f1c22SToby Isaac PetscFunctionBegin; 6804c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68054f572ea9SToby Isaac PetscAssertPointer(name, 2); 68069566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6807c58f1c22SToby Isaac if (!label) { 68089566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 68099566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6810c58f1c22SToby Isaac } 68119566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, value)); 68123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6813c58f1c22SToby Isaac } 6814c58f1c22SToby Isaac 6815cc4c1da9SBarry Smith /*@ 6816bb7acecfSBarry Smith DMClearLabelValue - Remove a point from a `DMLabel` with given value 6817c58f1c22SToby Isaac 6818c58f1c22SToby Isaac Not Collective 6819c58f1c22SToby Isaac 6820c58f1c22SToby Isaac Input Parameters: 6821bb7acecfSBarry Smith + dm - The `DM` object 6822c58f1c22SToby Isaac . name - The label name 6823c58f1c22SToby Isaac . point - The mesh point 6824c58f1c22SToby Isaac - value - The label value for this point 6825c58f1c22SToby Isaac 6826c58f1c22SToby Isaac Level: beginner 6827c58f1c22SToby Isaac 68281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelClearValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6829c58f1c22SToby Isaac @*/ 6830d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6831d71ae5a4SJacob Faibussowitsch { 6832c58f1c22SToby Isaac DMLabel label; 6833c58f1c22SToby Isaac 6834c58f1c22SToby Isaac PetscFunctionBegin; 6835c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68364f572ea9SToby Isaac PetscAssertPointer(name, 2); 68379566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 68383ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 68399566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, value)); 68403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6841c58f1c22SToby Isaac } 6842c58f1c22SToby Isaac 6843cc4c1da9SBarry Smith /*@ 6844bb7acecfSBarry Smith DMGetLabelSize - Get the value of `DMLabelGetNumValues()` of a `DMLabel` in the `DM` 6845c58f1c22SToby Isaac 6846c58f1c22SToby Isaac Not Collective 6847c58f1c22SToby Isaac 6848c58f1c22SToby Isaac Input Parameters: 6849bb7acecfSBarry Smith + dm - The `DM` object 6850c58f1c22SToby Isaac - name - The label name 6851c58f1c22SToby Isaac 6852c58f1c22SToby Isaac Output Parameter: 6853c58f1c22SToby Isaac . size - The number of different integer ids, or 0 if the label does not exist 6854c58f1c22SToby Isaac 6855c58f1c22SToby Isaac Level: beginner 6856c58f1c22SToby Isaac 685773ff1848SBarry Smith Developer Note: 6858bb7acecfSBarry Smith This should be renamed to something like `DMGetLabelNumValues()` or removed. 6859bb7acecfSBarry Smith 68601cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetNumValues()`, `DMSetLabelValue()`, `DMGetLabel()` 6861c58f1c22SToby Isaac @*/ 6862d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelSize(DM dm, const char name[], PetscInt *size) 6863d71ae5a4SJacob Faibussowitsch { 6864c58f1c22SToby Isaac DMLabel label; 6865c58f1c22SToby Isaac 6866c58f1c22SToby Isaac PetscFunctionBegin; 6867c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68684f572ea9SToby Isaac PetscAssertPointer(name, 2); 68694f572ea9SToby Isaac PetscAssertPointer(size, 3); 68709566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6871c58f1c22SToby Isaac *size = 0; 68723ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 68739566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, size)); 68743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6875c58f1c22SToby Isaac } 6876c58f1c22SToby Isaac 6877cc4c1da9SBarry Smith /*@ 6878bb7acecfSBarry Smith DMGetLabelIdIS - Get the `DMLabelGetValueIS()` from a `DMLabel` in the `DM` 6879c58f1c22SToby Isaac 6880c58f1c22SToby Isaac Not Collective 6881c58f1c22SToby Isaac 6882c58f1c22SToby Isaac Input Parameters: 688360225df5SJacob Faibussowitsch + dm - The `DM` object 6884c58f1c22SToby Isaac - name - The label name 6885c58f1c22SToby Isaac 6886c58f1c22SToby Isaac Output Parameter: 688720f4b53cSBarry Smith . ids - The integer ids, or `NULL` if the label does not exist 6888c58f1c22SToby Isaac 6889c58f1c22SToby Isaac Level: beginner 6890c58f1c22SToby Isaac 68911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValueIS()`, `DMGetLabelSize()` 6892c58f1c22SToby Isaac @*/ 6893d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelIdIS(DM dm, const char name[], IS *ids) 6894d71ae5a4SJacob Faibussowitsch { 6895c58f1c22SToby Isaac DMLabel label; 6896c58f1c22SToby Isaac 6897c58f1c22SToby Isaac PetscFunctionBegin; 6898c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68994f572ea9SToby Isaac PetscAssertPointer(name, 2); 69004f572ea9SToby Isaac PetscAssertPointer(ids, 3); 69019566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6902c58f1c22SToby Isaac *ids = NULL; 6903dab2e251SBlaise Bourdin if (label) { 69049566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, ids)); 6905dab2e251SBlaise Bourdin } else { 6906dab2e251SBlaise Bourdin /* returning an empty IS */ 69079566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_USE_POINTER, ids)); 6908dab2e251SBlaise Bourdin } 69093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6910c58f1c22SToby Isaac } 6911c58f1c22SToby Isaac 6912cc4c1da9SBarry Smith /*@ 6913c58f1c22SToby Isaac DMGetStratumSize - Get the number of points in a label stratum 6914c58f1c22SToby Isaac 6915c58f1c22SToby Isaac Not Collective 6916c58f1c22SToby Isaac 6917c58f1c22SToby Isaac Input Parameters: 6918bb7acecfSBarry Smith + dm - The `DM` object 6919b6971eaeSBarry Smith . name - The label name of the stratum 6920c58f1c22SToby Isaac - value - The stratum value 6921c58f1c22SToby Isaac 6922c58f1c22SToby Isaac Output Parameter: 6923bb7acecfSBarry Smith . size - The number of points, also called the stratum size 6924c58f1c22SToby Isaac 6925c58f1c22SToby Isaac Level: beginner 6926c58f1c22SToby Isaac 69271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumSize()`, `DMGetLabelSize()`, `DMGetLabelIds()` 6928c58f1c22SToby Isaac @*/ 6929d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumSize(DM dm, const char name[], PetscInt value, PetscInt *size) 6930d71ae5a4SJacob Faibussowitsch { 6931c58f1c22SToby Isaac DMLabel label; 6932c58f1c22SToby Isaac 6933c58f1c22SToby Isaac PetscFunctionBegin; 6934c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69354f572ea9SToby Isaac PetscAssertPointer(name, 2); 69364f572ea9SToby Isaac PetscAssertPointer(size, 4); 69379566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6938c58f1c22SToby Isaac *size = 0; 69393ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69409566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, value, size)); 69413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6942c58f1c22SToby Isaac } 6943c58f1c22SToby Isaac 6944cc4c1da9SBarry Smith /*@ 6945c58f1c22SToby Isaac DMGetStratumIS - Get the points in a label stratum 6946c58f1c22SToby Isaac 6947c58f1c22SToby Isaac Not Collective 6948c58f1c22SToby Isaac 6949c58f1c22SToby Isaac Input Parameters: 6950bb7acecfSBarry Smith + dm - The `DM` object 6951c58f1c22SToby Isaac . name - The label name 6952c58f1c22SToby Isaac - value - The stratum value 6953c58f1c22SToby Isaac 6954c58f1c22SToby Isaac Output Parameter: 695520f4b53cSBarry Smith . points - The stratum points, or `NULL` if the label does not exist or does not have that value 6956c58f1c22SToby Isaac 6957c58f1c22SToby Isaac Level: beginner 6958c58f1c22SToby Isaac 69591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumIS()`, `DMGetStratumSize()` 6960c58f1c22SToby Isaac @*/ 6961d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumIS(DM dm, const char name[], PetscInt value, IS *points) 6962d71ae5a4SJacob Faibussowitsch { 6963c58f1c22SToby Isaac DMLabel label; 6964c58f1c22SToby Isaac 6965c58f1c22SToby Isaac PetscFunctionBegin; 6966c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69674f572ea9SToby Isaac PetscAssertPointer(name, 2); 69684f572ea9SToby Isaac PetscAssertPointer(points, 4); 69699566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6970c58f1c22SToby Isaac *points = NULL; 69713ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69729566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, value, points)); 69733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6974c58f1c22SToby Isaac } 6975c58f1c22SToby Isaac 6976cc4c1da9SBarry Smith /*@ 69779044fa66SMatthew G. Knepley DMSetStratumIS - Set the points in a label stratum 69784de306b1SToby Isaac 69794de306b1SToby Isaac Not Collective 69804de306b1SToby Isaac 69814de306b1SToby Isaac Input Parameters: 6982bb7acecfSBarry Smith + dm - The `DM` object 69834de306b1SToby Isaac . name - The label name 69844de306b1SToby Isaac . value - The stratum value 69854de306b1SToby Isaac - points - The stratum points 69864de306b1SToby Isaac 69874de306b1SToby Isaac Level: beginner 69884de306b1SToby Isaac 69891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMClearLabelStratum()`, `DMLabelClearStratum()`, `DMLabelSetStratumIS()`, `DMGetStratumSize()` 69904de306b1SToby Isaac @*/ 6991d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetStratumIS(DM dm, const char name[], PetscInt value, IS points) 6992d71ae5a4SJacob Faibussowitsch { 69934de306b1SToby Isaac DMLabel label; 69944de306b1SToby Isaac 69954de306b1SToby Isaac PetscFunctionBegin; 69964de306b1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69974f572ea9SToby Isaac PetscAssertPointer(name, 2); 6998292bffcbSToby Isaac PetscValidHeaderSpecific(points, IS_CLASSID, 4); 69999566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 70003ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 70019566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(label, value, points)); 70023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70034de306b1SToby Isaac } 70044de306b1SToby Isaac 7005cc4c1da9SBarry Smith /*@ 7006bb7acecfSBarry Smith DMClearLabelStratum - Remove all points from a stratum from a `DMLabel` 7007c58f1c22SToby Isaac 7008c58f1c22SToby Isaac Not Collective 7009c58f1c22SToby Isaac 7010c58f1c22SToby Isaac Input Parameters: 7011bb7acecfSBarry Smith + dm - The `DM` object 7012c58f1c22SToby Isaac . name - The label name 7013c58f1c22SToby Isaac - value - The label value for this point 7014c58f1c22SToby Isaac 7015c58f1c22SToby Isaac Output Parameter: 7016c58f1c22SToby Isaac 7017c58f1c22SToby Isaac Level: beginner 7018c58f1c22SToby Isaac 70191cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMLabelClearStratum()`, `DMSetLabelValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 7020c58f1c22SToby Isaac @*/ 7021d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelStratum(DM dm, const char name[], PetscInt value) 7022d71ae5a4SJacob Faibussowitsch { 7023c58f1c22SToby Isaac DMLabel label; 7024c58f1c22SToby Isaac 7025c58f1c22SToby Isaac PetscFunctionBegin; 7026c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70274f572ea9SToby Isaac PetscAssertPointer(name, 2); 70289566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 70293ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 70309566063dSJacob Faibussowitsch PetscCall(DMLabelClearStratum(label, value)); 70313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7032c58f1c22SToby Isaac } 7033c58f1c22SToby Isaac 7034c58f1c22SToby Isaac /*@ 7035bb7acecfSBarry Smith DMGetNumLabels - Return the number of labels defined by on the `DM` 7036c58f1c22SToby Isaac 7037c58f1c22SToby Isaac Not Collective 7038c58f1c22SToby Isaac 7039c58f1c22SToby Isaac Input Parameter: 7040bb7acecfSBarry Smith . dm - The `DM` object 7041c58f1c22SToby Isaac 7042c58f1c22SToby Isaac Output Parameter: 7043c58f1c22SToby Isaac . numLabels - the number of Labels 7044c58f1c22SToby Isaac 7045c58f1c22SToby Isaac Level: intermediate 7046c58f1c22SToby Isaac 70471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabelName()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7048c58f1c22SToby Isaac @*/ 7049d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumLabels(DM dm, PetscInt *numLabels) 7050d71ae5a4SJacob Faibussowitsch { 70515d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7052c58f1c22SToby Isaac PetscInt n = 0; 7053c58f1c22SToby Isaac 7054c58f1c22SToby Isaac PetscFunctionBegin; 7055c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70564f572ea9SToby Isaac PetscAssertPointer(numLabels, 2); 70579371c9d4SSatish Balay while (next) { 70589371c9d4SSatish Balay ++n; 70599371c9d4SSatish Balay next = next->next; 70609371c9d4SSatish Balay } 7061c58f1c22SToby Isaac *numLabels = n; 70623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7063c58f1c22SToby Isaac } 7064c58f1c22SToby Isaac 7065cc4c1da9SBarry Smith /*@ 7066c58f1c22SToby Isaac DMGetLabelName - Return the name of nth label 7067c58f1c22SToby Isaac 7068c58f1c22SToby Isaac Not Collective 7069c58f1c22SToby Isaac 7070c58f1c22SToby Isaac Input Parameters: 7071bb7acecfSBarry Smith + dm - The `DM` object 7072c58f1c22SToby Isaac - n - the label number 7073c58f1c22SToby Isaac 7074c58f1c22SToby Isaac Output Parameter: 7075c58f1c22SToby Isaac . name - the label name 7076c58f1c22SToby Isaac 7077c58f1c22SToby Isaac Level: intermediate 7078c58f1c22SToby Isaac 707973ff1848SBarry Smith Developer Note: 7080bb7acecfSBarry Smith Some of the functions that appropriate on labels using their number have the suffix ByNum, others do not. 7081bb7acecfSBarry Smith 70821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7083c58f1c22SToby Isaac @*/ 7084cc4c1da9SBarry Smith PetscErrorCode DMGetLabelName(DM dm, PetscInt n, const char *name[]) 7085d71ae5a4SJacob Faibussowitsch { 70865d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7087c58f1c22SToby Isaac PetscInt l = 0; 7088c58f1c22SToby Isaac 7089c58f1c22SToby Isaac PetscFunctionBegin; 7090c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70914f572ea9SToby Isaac PetscAssertPointer(name, 3); 7092c58f1c22SToby Isaac while (next) { 7093c58f1c22SToby Isaac if (l == n) { 70949566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, name)); 70953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7096c58f1c22SToby Isaac } 7097c58f1c22SToby Isaac ++l; 7098c58f1c22SToby Isaac next = next->next; 7099c58f1c22SToby Isaac } 710063a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 7101c58f1c22SToby Isaac } 7102c58f1c22SToby Isaac 7103cc4c1da9SBarry Smith /*@ 7104bb7acecfSBarry Smith DMHasLabel - Determine whether the `DM` has a label of a given name 7105c58f1c22SToby Isaac 7106c58f1c22SToby Isaac Not Collective 7107c58f1c22SToby Isaac 7108c58f1c22SToby Isaac Input Parameters: 7109bb7acecfSBarry Smith + dm - The `DM` object 7110c58f1c22SToby Isaac - name - The label name 7111c58f1c22SToby Isaac 7112c58f1c22SToby Isaac Output Parameter: 7113bb7acecfSBarry Smith . hasLabel - `PETSC_TRUE` if the label is present 7114c58f1c22SToby Isaac 7115c58f1c22SToby Isaac Level: intermediate 7116c58f1c22SToby Isaac 71171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabel()`, `DMGetLabelByNum()`, `DMCreateLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7118c58f1c22SToby Isaac @*/ 7119d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasLabel(DM dm, const char name[], PetscBool *hasLabel) 7120d71ae5a4SJacob Faibussowitsch { 71215d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7122d67d17b1SMatthew G. Knepley const char *lname; 7123c58f1c22SToby Isaac 7124c58f1c22SToby Isaac PetscFunctionBegin; 7125c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71264f572ea9SToby Isaac PetscAssertPointer(name, 2); 71274f572ea9SToby Isaac PetscAssertPointer(hasLabel, 3); 7128c58f1c22SToby Isaac *hasLabel = PETSC_FALSE; 7129c58f1c22SToby Isaac while (next) { 71309566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 71319566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, hasLabel)); 7132c58f1c22SToby Isaac if (*hasLabel) break; 7133c58f1c22SToby Isaac next = next->next; 7134c58f1c22SToby Isaac } 71353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7136c58f1c22SToby Isaac } 7137c58f1c22SToby Isaac 7138a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown 7139cc4c1da9SBarry Smith /*@ 714020f4b53cSBarry Smith DMGetLabel - Return the label of a given name, or `NULL`, from a `DM` 7141c58f1c22SToby Isaac 7142c58f1c22SToby Isaac Not Collective 7143c58f1c22SToby Isaac 7144c58f1c22SToby Isaac Input Parameters: 7145bb7acecfSBarry Smith + dm - The `DM` object 7146c58f1c22SToby Isaac - name - The label name 7147c58f1c22SToby Isaac 7148c58f1c22SToby Isaac Output Parameter: 714920f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent 7150c58f1c22SToby Isaac 7151bb7acecfSBarry Smith Default labels in a `DMPLEX`: 7152bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 7153bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 7154bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 7155bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 7156bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 7157bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 71586d7c9049SMatthew G. Knepley 7159c58f1c22SToby Isaac Level: intermediate 7160c58f1c22SToby Isaac 716160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMHasLabel()`, `DMGetLabelByNum()`, `DMAddLabel()`, `DMCreateLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 7162c58f1c22SToby Isaac @*/ 7163d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabel(DM dm, const char name[], DMLabel *label) 7164d71ae5a4SJacob Faibussowitsch { 71655d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7166c58f1c22SToby Isaac PetscBool hasLabel; 7167d67d17b1SMatthew G. Knepley const char *lname; 7168c58f1c22SToby Isaac 7169c58f1c22SToby Isaac PetscFunctionBegin; 7170c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71714f572ea9SToby Isaac PetscAssertPointer(name, 2); 71724f572ea9SToby Isaac PetscAssertPointer(label, 3); 7173c58f1c22SToby Isaac *label = NULL; 7174c58f1c22SToby Isaac while (next) { 71759566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 71769566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 7177c58f1c22SToby Isaac if (hasLabel) { 7178c58f1c22SToby Isaac *label = next->label; 7179c58f1c22SToby Isaac break; 7180c58f1c22SToby Isaac } 7181c58f1c22SToby Isaac next = next->next; 7182c58f1c22SToby Isaac } 71833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7184c58f1c22SToby Isaac } 7185c58f1c22SToby Isaac 7186cc4c1da9SBarry Smith /*@ 7187bb7acecfSBarry Smith DMGetLabelByNum - Return the nth label on a `DM` 7188c58f1c22SToby Isaac 7189c58f1c22SToby Isaac Not Collective 7190c58f1c22SToby Isaac 7191c58f1c22SToby Isaac Input Parameters: 7192bb7acecfSBarry Smith + dm - The `DM` object 7193c58f1c22SToby Isaac - n - the label number 7194c58f1c22SToby Isaac 7195c58f1c22SToby Isaac Output Parameter: 7196c58f1c22SToby Isaac . label - the label 7197c58f1c22SToby Isaac 7198c58f1c22SToby Isaac Level: intermediate 7199c58f1c22SToby Isaac 72001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7201c58f1c22SToby Isaac @*/ 7202d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelByNum(DM dm, PetscInt n, DMLabel *label) 7203d71ae5a4SJacob Faibussowitsch { 72045d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7205c58f1c22SToby Isaac PetscInt l = 0; 7206c58f1c22SToby Isaac 7207c58f1c22SToby Isaac PetscFunctionBegin; 7208c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72094f572ea9SToby Isaac PetscAssertPointer(label, 3); 7210c58f1c22SToby Isaac while (next) { 7211c58f1c22SToby Isaac if (l == n) { 7212c58f1c22SToby Isaac *label = next->label; 72133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7214c58f1c22SToby Isaac } 7215c58f1c22SToby Isaac ++l; 7216c58f1c22SToby Isaac next = next->next; 7217c58f1c22SToby Isaac } 721863a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 7219c58f1c22SToby Isaac } 7220c58f1c22SToby Isaac 7221cc4c1da9SBarry Smith /*@ 7222bb7acecfSBarry Smith DMAddLabel - Add the label to this `DM` 7223c58f1c22SToby Isaac 7224c58f1c22SToby Isaac Not Collective 7225c58f1c22SToby Isaac 7226c58f1c22SToby Isaac Input Parameters: 7227bb7acecfSBarry Smith + dm - The `DM` object 7228bb7acecfSBarry Smith - label - The `DMLabel` 7229c58f1c22SToby Isaac 7230c58f1c22SToby Isaac Level: developer 7231c58f1c22SToby Isaac 723260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7233c58f1c22SToby Isaac @*/ 7234d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddLabel(DM dm, DMLabel label) 7235d71ae5a4SJacob Faibussowitsch { 72365d80c0bfSVaclav Hapla DMLabelLink l, *p, tmpLabel; 7237c58f1c22SToby Isaac PetscBool hasLabel; 7238d67d17b1SMatthew G. Knepley const char *lname; 72395d80c0bfSVaclav Hapla PetscBool flg; 7240c58f1c22SToby Isaac 7241c58f1c22SToby Isaac PetscFunctionBegin; 7242c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72439566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &lname)); 72449566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, lname, &hasLabel)); 72457a8be351SBarry Smith PetscCheck(!hasLabel, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in this DM", lname); 72469566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(1, &tmpLabel)); 7247c58f1c22SToby Isaac tmpLabel->label = label; 7248c58f1c22SToby Isaac tmpLabel->output = PETSC_TRUE; 72495d80c0bfSVaclav Hapla for (p = &dm->labels; (l = *p); p = &l->next) { } 72505d80c0bfSVaclav Hapla *p = tmpLabel; 72519566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 72529566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 72535d80c0bfSVaclav Hapla if (flg) dm->depthLabel = label; 72549566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 7255ba2698f1SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 72563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7257c58f1c22SToby Isaac } 7258c58f1c22SToby Isaac 7259a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown 7260cc4c1da9SBarry Smith /*@ 72614a7ee7d0SMatthew G. Knepley DMSetLabel - Replaces the label of a given name, or ignores it if the name is not present 72624a7ee7d0SMatthew G. Knepley 72634a7ee7d0SMatthew G. Knepley Not Collective 72644a7ee7d0SMatthew G. Knepley 72654a7ee7d0SMatthew G. Knepley Input Parameters: 7266bb7acecfSBarry Smith + dm - The `DM` object 7267bb7acecfSBarry Smith - label - The `DMLabel`, having the same name, to substitute 72684a7ee7d0SMatthew G. Knepley 7269bb7acecfSBarry Smith Default labels in a `DMPLEX`: 7270bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 7271bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 7272bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 7273bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 7274bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 7275bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 72764a7ee7d0SMatthew G. Knepley 72774a7ee7d0SMatthew G. Knepley Level: intermediate 72784a7ee7d0SMatthew G. Knepley 72791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 72804a7ee7d0SMatthew G. Knepley @*/ 7281d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabel(DM dm, DMLabel label) 7282d71ae5a4SJacob Faibussowitsch { 72834a7ee7d0SMatthew G. Knepley DMLabelLink next = dm->labels; 72844a7ee7d0SMatthew G. Knepley PetscBool hasLabel, flg; 72854a7ee7d0SMatthew G. Knepley const char *name, *lname; 72864a7ee7d0SMatthew G. Knepley 72874a7ee7d0SMatthew G. Knepley PetscFunctionBegin; 72884a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72894a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 72909566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 72914a7ee7d0SMatthew G. Knepley while (next) { 72929566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 72939566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 72944a7ee7d0SMatthew G. Knepley if (hasLabel) { 72959566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 72969566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 72974a7ee7d0SMatthew G. Knepley if (flg) dm->depthLabel = label; 72989566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 72994a7ee7d0SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 73009566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 73014a7ee7d0SMatthew G. Knepley next->label = label; 73024a7ee7d0SMatthew G. Knepley break; 73034a7ee7d0SMatthew G. Knepley } 73044a7ee7d0SMatthew G. Knepley next = next->next; 73054a7ee7d0SMatthew G. Knepley } 73063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 73074a7ee7d0SMatthew G. Knepley } 73084a7ee7d0SMatthew G. Knepley 7309cc4c1da9SBarry Smith /*@ 7310bb7acecfSBarry Smith DMRemoveLabel - Remove the label given by name from this `DM` 7311c58f1c22SToby Isaac 7312c58f1c22SToby Isaac Not Collective 7313c58f1c22SToby Isaac 7314c58f1c22SToby Isaac Input Parameters: 7315bb7acecfSBarry Smith + dm - The `DM` object 7316c58f1c22SToby Isaac - name - The label name 7317c58f1c22SToby Isaac 7318c58f1c22SToby Isaac Output Parameter: 731920f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent. Pass in `NULL` to call `DMLabelDestroy()` on the label, otherwise the 7320bb7acecfSBarry Smith caller is responsible for calling `DMLabelDestroy()`. 7321c58f1c22SToby Isaac 7322c58f1c22SToby Isaac Level: developer 7323c58f1c22SToby Isaac 73241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabelBySelf()` 7325c58f1c22SToby Isaac @*/ 7326d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabel(DM dm, const char name[], DMLabel *label) 7327d71ae5a4SJacob Faibussowitsch { 732895d578d6SVaclav Hapla DMLabelLink link, *pnext; 7329c58f1c22SToby Isaac PetscBool hasLabel; 7330d67d17b1SMatthew G. Knepley const char *lname; 7331c58f1c22SToby Isaac 7332c58f1c22SToby Isaac PetscFunctionBegin; 7333c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73344f572ea9SToby Isaac PetscAssertPointer(name, 2); 7335e5472504SVaclav Hapla if (label) { 73364f572ea9SToby Isaac PetscAssertPointer(label, 3); 7337c58f1c22SToby Isaac *label = NULL; 7338e5472504SVaclav Hapla } 73395d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 73409566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)link->label, &lname)); 73419566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 7342c58f1c22SToby Isaac if (hasLabel) { 734395d578d6SVaclav Hapla *pnext = link->next; /* Remove from list */ 73449566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &hasLabel)); 734595d578d6SVaclav Hapla if (hasLabel) dm->depthLabel = NULL; 73469566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &hasLabel)); 7347ba2698f1SMatthew G. Knepley if (hasLabel) dm->celltypeLabel = NULL; 734895d578d6SVaclav Hapla if (label) *label = link->label; 73499566063dSJacob Faibussowitsch else PetscCall(DMLabelDestroy(&link->label)); 73509566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7351c58f1c22SToby Isaac break; 7352c58f1c22SToby Isaac } 7353c58f1c22SToby Isaac } 73543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7355c58f1c22SToby Isaac } 7356c58f1c22SToby Isaac 7357306894acSVaclav Hapla /*@ 7358bb7acecfSBarry Smith DMRemoveLabelBySelf - Remove the label from this `DM` 7359306894acSVaclav Hapla 7360306894acSVaclav Hapla Not Collective 7361306894acSVaclav Hapla 7362306894acSVaclav Hapla Input Parameters: 7363bb7acecfSBarry Smith + dm - The `DM` object 7364bb7acecfSBarry Smith . label - The `DMLabel` to be removed from the `DM` 736520f4b53cSBarry Smith - failNotFound - Should it fail if the label is not found in the `DM`? 7366306894acSVaclav Hapla 7367306894acSVaclav Hapla Level: developer 7368306894acSVaclav Hapla 7369bb7acecfSBarry Smith Note: 7370306894acSVaclav Hapla Only exactly the same instance is removed if found, name match is ignored. 7371bb7acecfSBarry Smith If the `DM` has an exclusive reference to the label, the label gets destroyed and 7372306894acSVaclav Hapla *label nullified. 7373306894acSVaclav Hapla 73741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()` `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabel()` 7375306894acSVaclav Hapla @*/ 7376d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabelBySelf(DM dm, DMLabel *label, PetscBool failNotFound) 7377d71ae5a4SJacob Faibussowitsch { 737843e45a93SVaclav Hapla DMLabelLink link, *pnext; 7379306894acSVaclav Hapla PetscBool hasLabel = PETSC_FALSE; 7380306894acSVaclav Hapla 7381306894acSVaclav Hapla PetscFunctionBegin; 7382306894acSVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73834f572ea9SToby Isaac PetscAssertPointer(label, 2); 73843ba16761SJacob Faibussowitsch if (!*label && !failNotFound) PetscFunctionReturn(PETSC_SUCCESS); 7385306894acSVaclav Hapla PetscValidHeaderSpecific(*label, DMLABEL_CLASSID, 2); 7386306894acSVaclav Hapla PetscValidLogicalCollectiveBool(dm, failNotFound, 3); 73875d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 738843e45a93SVaclav Hapla if (*label == link->label) { 7389306894acSVaclav Hapla hasLabel = PETSC_TRUE; 739043e45a93SVaclav Hapla *pnext = link->next; /* Remove from list */ 7391306894acSVaclav Hapla if (*label == dm->depthLabel) dm->depthLabel = NULL; 7392ba2698f1SMatthew G. Knepley if (*label == dm->celltypeLabel) dm->celltypeLabel = NULL; 739343e45a93SVaclav Hapla if (((PetscObject)link->label)->refct < 2) *label = NULL; /* nullify if exclusive reference */ 73949566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&link->label)); 73959566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7396306894acSVaclav Hapla break; 7397306894acSVaclav Hapla } 7398306894acSVaclav Hapla } 73997a8be351SBarry Smith PetscCheck(hasLabel || !failNotFound, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Given label not found in DM"); 74003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7401306894acSVaclav Hapla } 7402306894acSVaclav Hapla 7403cc4c1da9SBarry Smith /*@ 7404c58f1c22SToby Isaac DMGetLabelOutput - Get the output flag for a given label 7405c58f1c22SToby Isaac 7406c58f1c22SToby Isaac Not Collective 7407c58f1c22SToby Isaac 7408c58f1c22SToby Isaac Input Parameters: 7409bb7acecfSBarry Smith + dm - The `DM` object 7410c58f1c22SToby Isaac - name - The label name 7411c58f1c22SToby Isaac 7412c58f1c22SToby Isaac Output Parameter: 7413c58f1c22SToby Isaac . output - The flag for output 7414c58f1c22SToby Isaac 7415c58f1c22SToby Isaac Level: developer 7416c58f1c22SToby Isaac 74171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMSetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7418c58f1c22SToby Isaac @*/ 7419d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelOutput(DM dm, const char name[], PetscBool *output) 7420d71ae5a4SJacob Faibussowitsch { 74215d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7422d67d17b1SMatthew G. Knepley const char *lname; 7423c58f1c22SToby Isaac 7424c58f1c22SToby Isaac PetscFunctionBegin; 7425c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 74264f572ea9SToby Isaac PetscAssertPointer(name, 2); 74274f572ea9SToby Isaac PetscAssertPointer(output, 3); 7428c58f1c22SToby Isaac while (next) { 7429c58f1c22SToby Isaac PetscBool flg; 7430c58f1c22SToby Isaac 74319566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 74329566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 74339371c9d4SSatish Balay if (flg) { 74349371c9d4SSatish Balay *output = next->output; 74353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 74369371c9d4SSatish Balay } 7437c58f1c22SToby Isaac next = next->next; 7438c58f1c22SToby Isaac } 743998921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7440c58f1c22SToby Isaac } 7441c58f1c22SToby Isaac 7442cc4c1da9SBarry Smith /*@ 7443bb7acecfSBarry Smith DMSetLabelOutput - Set if a given label should be saved to a `PetscViewer` in calls to `DMView()` 7444c58f1c22SToby Isaac 7445c58f1c22SToby Isaac Not Collective 7446c58f1c22SToby Isaac 7447c58f1c22SToby Isaac Input Parameters: 7448bb7acecfSBarry Smith + dm - The `DM` object 7449c58f1c22SToby Isaac . name - The label name 7450bb7acecfSBarry Smith - output - `PETSC_TRUE` to save the label to the viewer 7451c58f1c22SToby Isaac 7452c58f1c22SToby Isaac Level: developer 7453c58f1c22SToby Isaac 74541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetOutputFlag()`, `DMGetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7455c58f1c22SToby Isaac @*/ 7456d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelOutput(DM dm, const char name[], PetscBool output) 7457d71ae5a4SJacob Faibussowitsch { 74585d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7459d67d17b1SMatthew G. Knepley const char *lname; 7460c58f1c22SToby Isaac 7461c58f1c22SToby Isaac PetscFunctionBegin; 7462c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 74634f572ea9SToby Isaac PetscAssertPointer(name, 2); 7464c58f1c22SToby Isaac while (next) { 7465c58f1c22SToby Isaac PetscBool flg; 7466c58f1c22SToby Isaac 74679566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 74689566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 74699371c9d4SSatish Balay if (flg) { 74709371c9d4SSatish Balay next->output = output; 74713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 74729371c9d4SSatish Balay } 7473c58f1c22SToby Isaac next = next->next; 7474c58f1c22SToby Isaac } 747598921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7476c58f1c22SToby Isaac } 7477c58f1c22SToby Isaac 7478c58f1c22SToby Isaac /*@ 7479bb7acecfSBarry Smith DMCopyLabels - Copy labels from one `DM` mesh to another `DM` with a superset of the points 7480c58f1c22SToby Isaac 748120f4b53cSBarry Smith Collective 7482c58f1c22SToby Isaac 7483d8d19677SJose E. Roman Input Parameters: 7484bb7acecfSBarry Smith + dmA - The `DM` object with initial labels 7485bb7acecfSBarry Smith . dmB - The `DM` object to which labels are copied 7486bb7acecfSBarry Smith . mode - Copy labels by pointers (`PETSC_OWN_POINTER`) or duplicate them (`PETSC_COPY_VALUES`) 7487bb7acecfSBarry Smith . all - Copy all labels including "depth", "dim", and "celltype" (`PETSC_TRUE`) which are otherwise ignored (`PETSC_FALSE`) 7488bb7acecfSBarry Smith - emode - How to behave when a `DMLabel` in the source and destination `DM`s with the same name is encountered (see `DMCopyLabelsMode`) 7489c58f1c22SToby Isaac 7490c58f1c22SToby Isaac Level: intermediate 7491c58f1c22SToby Isaac 7492bb7acecfSBarry Smith Note: 74932cbb9b06SVaclav Hapla This is typically used when interpolating or otherwise adding to a mesh, or testing. 7494c58f1c22SToby Isaac 74951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode` 7496c58f1c22SToby Isaac @*/ 7497d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyLabels(DM dmA, DM dmB, PetscCopyMode mode, PetscBool all, DMCopyLabelsMode emode) 7498d71ae5a4SJacob Faibussowitsch { 74992cbb9b06SVaclav Hapla DMLabel label, labelNew, labelOld; 7500c58f1c22SToby Isaac const char *name; 7501c58f1c22SToby Isaac PetscBool flg; 75025d80c0bfSVaclav Hapla DMLabelLink link; 7503c58f1c22SToby Isaac 75045d80c0bfSVaclav Hapla PetscFunctionBegin; 75055d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 75065d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 75075d80c0bfSVaclav Hapla PetscValidLogicalCollectiveEnum(dmA, mode, 3); 75085d80c0bfSVaclav Hapla PetscValidLogicalCollectiveBool(dmA, all, 4); 75097a8be351SBarry Smith PetscCheck(mode != PETSC_USE_POINTER, PetscObjectComm((PetscObject)dmA), PETSC_ERR_SUP, "PETSC_USE_POINTER not supported for objects"); 75103ba16761SJacob Faibussowitsch if (dmA == dmB) PetscFunctionReturn(PETSC_SUCCESS); 75115d80c0bfSVaclav Hapla for (link = dmA->labels; link; link = link->next) { 75125d80c0bfSVaclav Hapla label = link->label; 75139566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 75145d80c0bfSVaclav Hapla if (!all) { 75159566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &flg)); 7516c58f1c22SToby Isaac if (flg) continue; 75179566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "dim", &flg)); 75187d5acc75SStefano Zampini if (flg) continue; 75199566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &flg)); 7520ba2698f1SMatthew G. Knepley if (flg) continue; 75215d80c0bfSVaclav Hapla } 75229566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmB, name, &labelOld)); 75232cbb9b06SVaclav Hapla if (labelOld) { 75242cbb9b06SVaclav Hapla switch (emode) { 7525d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_KEEP: 7526d71ae5a4SJacob Faibussowitsch continue; 7527d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_REPLACE: 7528d71ae5a4SJacob Faibussowitsch PetscCall(DMRemoveLabelBySelf(dmB, &labelOld, PETSC_TRUE)); 7529d71ae5a4SJacob Faibussowitsch break; 7530d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_FAIL: 7531d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in destination DM", name); 7532d71ae5a4SJacob Faibussowitsch default: 7533d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Unhandled DMCopyLabelsMode %d", (int)emode); 75342cbb9b06SVaclav Hapla } 75352cbb9b06SVaclav Hapla } 75365d80c0bfSVaclav Hapla if (mode == PETSC_COPY_VALUES) { 75379566063dSJacob Faibussowitsch PetscCall(DMLabelDuplicate(label, &labelNew)); 75385d80c0bfSVaclav Hapla } else { 75395d80c0bfSVaclav Hapla labelNew = label; 75405d80c0bfSVaclav Hapla } 75419566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dmB, labelNew)); 75429566063dSJacob Faibussowitsch if (mode == PETSC_COPY_VALUES) PetscCall(DMLabelDestroy(&labelNew)); 7543c58f1c22SToby Isaac } 75443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7545c58f1c22SToby Isaac } 7546461a15a0SLisandro Dalcin 7547609dae6eSVaclav Hapla /*@C 7548b4028c23SStefano Zampini DMCompareLabels - Compare labels between two `DM` objects 7549609dae6eSVaclav Hapla 755020f4b53cSBarry Smith Collective; No Fortran Support 7551609dae6eSVaclav Hapla 7552609dae6eSVaclav Hapla Input Parameters: 7553bb7acecfSBarry Smith + dm0 - First `DM` object 7554bb7acecfSBarry Smith - dm1 - Second `DM` object 7555609dae6eSVaclav Hapla 7556a4e35b19SJacob Faibussowitsch Output Parameters: 75575efe38ccSVaclav Hapla + equal - (Optional) Flag whether labels of dm0 and dm1 are the same 755820f4b53cSBarry Smith - message - (Optional) Message describing the difference, or `NULL` if there is no difference 7559609dae6eSVaclav Hapla 7560609dae6eSVaclav Hapla Level: intermediate 7561609dae6eSVaclav Hapla 7562609dae6eSVaclav Hapla Notes: 7563bb7acecfSBarry Smith The output flag equal will be the same on all processes. 7564bb7acecfSBarry Smith 756520f4b53cSBarry Smith If equal is passed as `NULL` and difference is found, an error is thrown on all processes. 7566bb7acecfSBarry Smith 756720f4b53cSBarry Smith Make sure to pass equal is `NULL` on all processes or none of them. 7568609dae6eSVaclav Hapla 75695efe38ccSVaclav Hapla The output message is set independently on each rank. 7570bb7acecfSBarry Smith 7571bb7acecfSBarry Smith message must be freed with `PetscFree()` 7572bb7acecfSBarry Smith 757320f4b53cSBarry Smith If message is passed as `NULL` and a difference is found, the difference description is printed to stderr in synchronized manner. 7574bb7acecfSBarry Smith 757520f4b53cSBarry Smith Make sure to pass message as `NULL` on all processes or no processes. 7576609dae6eSVaclav Hapla 7577609dae6eSVaclav Hapla Labels are matched by name. If the number of labels and their names are equal, 7578bb7acecfSBarry Smith `DMLabelCompare()` is used to compare each pair of labels with the same name. 7579609dae6eSVaclav Hapla 7580cc4c1da9SBarry Smith Developer Note: 7581cc4c1da9SBarry Smith Can automatically generate the Fortran stub because `message` must be freed with `PetscFree()` 7582cc4c1da9SBarry Smith 75831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`, `DMLabelCompare()` 7584609dae6eSVaclav Hapla @*/ 7585d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompareLabels(DM dm0, DM dm1, PetscBool *equal, char **message) 7586d71ae5a4SJacob Faibussowitsch { 75875efe38ccSVaclav Hapla PetscInt n, i; 7588609dae6eSVaclav Hapla char msg[PETSC_MAX_PATH_LEN] = ""; 75895efe38ccSVaclav Hapla PetscBool eq; 7590609dae6eSVaclav Hapla MPI_Comm comm; 75915efe38ccSVaclav Hapla PetscMPIInt rank; 7592609dae6eSVaclav Hapla 7593609dae6eSVaclav Hapla PetscFunctionBegin; 7594609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm0, DM_CLASSID, 1); 7595609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm1, DM_CLASSID, 2); 7596609dae6eSVaclav Hapla PetscCheckSameComm(dm0, 1, dm1, 2); 75974f572ea9SToby Isaac if (equal) PetscAssertPointer(equal, 3); 75984f572ea9SToby Isaac if (message) PetscAssertPointer(message, 4); 75999566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm0, &comm)); 76009566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 76015efe38ccSVaclav Hapla { 76025efe38ccSVaclav Hapla PetscInt n1; 76035efe38ccSVaclav Hapla 76049566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm0, &n)); 76059566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm1, &n1)); 76065efe38ccSVaclav Hapla eq = (PetscBool)(n == n1); 760748a46eb9SPierre Jolivet if (!eq) PetscCall(PetscSNPrintf(msg, sizeof(msg), "Number of labels in dm0 = %" PetscInt_FMT " != %" PetscInt_FMT " = Number of labels in dm1", n, n1)); 7608462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 76095efe38ccSVaclav Hapla if (!eq) goto finish; 76105efe38ccSVaclav Hapla } 76115efe38ccSVaclav Hapla for (i = 0; i < n; i++) { 7612609dae6eSVaclav Hapla DMLabel l0, l1; 7613609dae6eSVaclav Hapla const char *name; 7614609dae6eSVaclav Hapla char *msgInner; 7615609dae6eSVaclav Hapla 7616609dae6eSVaclav Hapla /* Ignore label order */ 76179566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm0, i, &l0)); 76189566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)l0, &name)); 76199566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm1, name, &l1)); 7620609dae6eSVaclav Hapla if (!l1) { 762163a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(msg, sizeof(msg), "Label \"%s\" (#%" PetscInt_FMT " in dm0) not found in dm1", name, i)); 76225efe38ccSVaclav Hapla eq = PETSC_FALSE; 76235efe38ccSVaclav Hapla break; 7624609dae6eSVaclav Hapla } 76259566063dSJacob Faibussowitsch PetscCall(DMLabelCompare(comm, l0, l1, &eq, &msgInner)); 76269566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(msg, msgInner, sizeof(msg))); 76279566063dSJacob Faibussowitsch PetscCall(PetscFree(msgInner)); 76285efe38ccSVaclav Hapla if (!eq) break; 7629609dae6eSVaclav Hapla } 7630462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 7631609dae6eSVaclav Hapla finish: 76325efe38ccSVaclav Hapla /* If message output arg not set, print to stderr */ 7633609dae6eSVaclav Hapla if (message) { 7634609dae6eSVaclav Hapla *message = NULL; 763548a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscStrallocpy(msg, message)); 76365efe38ccSVaclav Hapla } else { 763748a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscSynchronizedFPrintf(comm, PETSC_STDERR, "[%d] %s\n", rank, msg)); 76389566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, PETSC_STDERR)); 76395efe38ccSVaclav Hapla } 76405efe38ccSVaclav Hapla /* If same output arg not ser and labels are not equal, throw error */ 76415efe38ccSVaclav Hapla if (equal) *equal = eq; 76427a8be351SBarry Smith else PetscCheck(eq, comm, PETSC_ERR_ARG_INCOMP, "DMLabels are not the same in dm0 and dm1"); 76433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7644609dae6eSVaclav Hapla } 7645609dae6eSVaclav Hapla 7646d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue_Fast(DM dm, DMLabel *label, const char name[], PetscInt point, PetscInt value) 7647d71ae5a4SJacob Faibussowitsch { 7648461a15a0SLisandro Dalcin PetscFunctionBegin; 76494f572ea9SToby Isaac PetscAssertPointer(label, 2); 7650461a15a0SLisandro Dalcin if (!*label) { 76519566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 76529566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, label)); 7653461a15a0SLisandro Dalcin } 76549566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(*label, point, value)); 76553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7656461a15a0SLisandro Dalcin } 7657461a15a0SLisandro Dalcin 76580fdc7489SMatthew Knepley /* 76590fdc7489SMatthew Knepley Many mesh programs, such as Triangle and TetGen, allow only a single label for each mesh point. Therefore, we would 76600fdc7489SMatthew Knepley like to encode all label IDs using a single, universal label. We can do this by assigning an integer to every 76610fdc7489SMatthew Knepley (label, id) pair in the DM. 76620fdc7489SMatthew Knepley 76630fdc7489SMatthew Knepley However, a mesh point can have multiple labels, so we must separate all these values. We will assign a bit range to 76640fdc7489SMatthew Knepley each label. 76650fdc7489SMatthew Knepley */ 7666d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreate(DM dm, DMUniversalLabel *universal) 7667d71ae5a4SJacob Faibussowitsch { 76680fdc7489SMatthew Knepley DMUniversalLabel ul; 76690fdc7489SMatthew Knepley PetscBool *active; 76700fdc7489SMatthew Knepley PetscInt pStart, pEnd, p, Nl, l, m; 76710fdc7489SMatthew Knepley 76720fdc7489SMatthew Knepley PetscFunctionBegin; 76739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &ul)); 76749566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "universal", &ul->label)); 76759566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 76769566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Nl, &active)); 76770fdc7489SMatthew Knepley ul->Nl = 0; 76780fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 76790fdc7489SMatthew Knepley PetscBool isdepth, iscelltype; 76800fdc7489SMatthew Knepley const char *name; 76810fdc7489SMatthew Knepley 76829566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 76839566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "depth", 6, &isdepth)); 76849566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "celltype", 9, &iscelltype)); 76850fdc7489SMatthew Knepley active[l] = !(isdepth || iscelltype) ? PETSC_TRUE : PETSC_FALSE; 76860fdc7489SMatthew Knepley if (active[l]) ++ul->Nl; 76870fdc7489SMatthew Knepley } 76889566063dSJacob Faibussowitsch PetscCall(PetscCalloc5(ul->Nl, &ul->names, ul->Nl, &ul->indices, ul->Nl + 1, &ul->offsets, ul->Nl + 1, &ul->bits, ul->Nl, &ul->masks)); 76890fdc7489SMatthew Knepley ul->Nv = 0; 76900fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 76910fdc7489SMatthew Knepley DMLabel label; 76920fdc7489SMatthew Knepley PetscInt nv; 76930fdc7489SMatthew Knepley const char *name; 76940fdc7489SMatthew Knepley 76950fdc7489SMatthew Knepley if (!active[l]) continue; 76969566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 76979566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 76989566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 76999566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(name, &ul->names[m])); 77000fdc7489SMatthew Knepley ul->indices[m] = l; 77010fdc7489SMatthew Knepley ul->Nv += nv; 77020fdc7489SMatthew Knepley ul->offsets[m + 1] = nv; 77030fdc7489SMatthew Knepley ul->bits[m + 1] = PetscCeilReal(PetscLog2Real(nv + 1)); 77040fdc7489SMatthew Knepley ++m; 77050fdc7489SMatthew Knepley } 77060fdc7489SMatthew Knepley for (l = 1; l <= ul->Nl; ++l) { 77070fdc7489SMatthew Knepley ul->offsets[l] = ul->offsets[l - 1] + ul->offsets[l]; 77080fdc7489SMatthew Knepley ul->bits[l] = ul->bits[l - 1] + ul->bits[l]; 77090fdc7489SMatthew Knepley } 77100fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 77110fdc7489SMatthew Knepley PetscInt b; 77120fdc7489SMatthew Knepley 77130fdc7489SMatthew Knepley ul->masks[l] = 0; 77140fdc7489SMatthew Knepley for (b = ul->bits[l]; b < ul->bits[l + 1]; ++b) ul->masks[l] |= 1 << b; 77150fdc7489SMatthew Knepley } 77169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ul->Nv, &ul->values)); 77170fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 77180fdc7489SMatthew Knepley DMLabel label; 77190fdc7489SMatthew Knepley IS valueIS; 77200fdc7489SMatthew Knepley const PetscInt *varr; 77210fdc7489SMatthew Knepley PetscInt nv, v; 77220fdc7489SMatthew Knepley 77230fdc7489SMatthew Knepley if (!active[l]) continue; 77249566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 77259566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 77269566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 77279566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &varr)); 7728ad540459SPierre Jolivet for (v = 0; v < nv; ++v) ul->values[ul->offsets[m] + v] = varr[v]; 77299566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &varr)); 77309566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 77319566063dSJacob Faibussowitsch PetscCall(PetscSortInt(nv, &ul->values[ul->offsets[m]])); 77320fdc7489SMatthew Knepley ++m; 77330fdc7489SMatthew Knepley } 77349566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 77350fdc7489SMatthew Knepley for (p = pStart; p < pEnd; ++p) { 77360fdc7489SMatthew Knepley PetscInt uval = 0; 77370fdc7489SMatthew Knepley PetscBool marked = PETSC_FALSE; 77380fdc7489SMatthew Knepley 77390fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 77400fdc7489SMatthew Knepley DMLabel label; 77410649b39aSStefano Zampini PetscInt val, defval, loc, nv; 77420fdc7489SMatthew Knepley 77430fdc7489SMatthew Knepley if (!active[l]) continue; 77449566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 77459566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, p, &val)); 77469566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defval)); 77479371c9d4SSatish Balay if (val == defval) { 77489371c9d4SSatish Balay ++m; 77499371c9d4SSatish Balay continue; 77509371c9d4SSatish Balay } 77510649b39aSStefano Zampini nv = ul->offsets[m + 1] - ul->offsets[m]; 77520fdc7489SMatthew Knepley marked = PETSC_TRUE; 77539566063dSJacob Faibussowitsch PetscCall(PetscFindInt(val, nv, &ul->values[ul->offsets[m]], &loc)); 775463a3b9bcSJacob Faibussowitsch PetscCheck(loc >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Label value %" PetscInt_FMT " not found in compression array", val); 77550fdc7489SMatthew Knepley uval += (loc + 1) << ul->bits[m]; 77560fdc7489SMatthew Knepley ++m; 77570fdc7489SMatthew Knepley } 77589566063dSJacob Faibussowitsch if (marked) PetscCall(DMLabelSetValue(ul->label, p, uval)); 77590fdc7489SMatthew Knepley } 77609566063dSJacob Faibussowitsch PetscCall(PetscFree(active)); 77610fdc7489SMatthew Knepley *universal = ul; 77623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77630fdc7489SMatthew Knepley } 77640fdc7489SMatthew Knepley 7765d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelDestroy(DMUniversalLabel *universal) 7766d71ae5a4SJacob Faibussowitsch { 77670fdc7489SMatthew Knepley PetscInt l; 77680fdc7489SMatthew Knepley 77690fdc7489SMatthew Knepley PetscFunctionBegin; 77709566063dSJacob Faibussowitsch for (l = 0; l < (*universal)->Nl; ++l) PetscCall(PetscFree((*universal)->names[l])); 77719566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&(*universal)->label)); 77729566063dSJacob Faibussowitsch PetscCall(PetscFree5((*universal)->names, (*universal)->indices, (*universal)->offsets, (*universal)->bits, (*universal)->masks)); 77739566063dSJacob Faibussowitsch PetscCall(PetscFree((*universal)->values)); 77749566063dSJacob Faibussowitsch PetscCall(PetscFree(*universal)); 77750fdc7489SMatthew Knepley *universal = NULL; 77763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77770fdc7489SMatthew Knepley } 77780fdc7489SMatthew Knepley 7779d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelGetLabel(DMUniversalLabel ul, DMLabel *ulabel) 7780d71ae5a4SJacob Faibussowitsch { 77810fdc7489SMatthew Knepley PetscFunctionBegin; 77824f572ea9SToby Isaac PetscAssertPointer(ulabel, 2); 77830fdc7489SMatthew Knepley *ulabel = ul->label; 77843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77850fdc7489SMatthew Knepley } 77860fdc7489SMatthew Knepley 7787d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreateLabels(DMUniversalLabel ul, PetscBool preserveOrder, DM dm) 7788d71ae5a4SJacob Faibussowitsch { 77890fdc7489SMatthew Knepley PetscInt Nl = ul->Nl, l; 77900fdc7489SMatthew Knepley 77910fdc7489SMatthew Knepley PetscFunctionBegin; 7792064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dm, DM_CLASSID, 3); 77930fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 77949566063dSJacob Faibussowitsch if (preserveOrder) PetscCall(DMCreateLabelAtIndex(dm, ul->indices[l], ul->names[l])); 77959566063dSJacob Faibussowitsch else PetscCall(DMCreateLabel(dm, ul->names[l])); 77960fdc7489SMatthew Knepley } 77970fdc7489SMatthew Knepley if (preserveOrder) { 77980fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 77990fdc7489SMatthew Knepley const char *name; 78000fdc7489SMatthew Knepley PetscBool match; 78010fdc7489SMatthew Knepley 78029566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, ul->indices[l], &name)); 78039566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, ul->names[l], &match)); 780463a3b9bcSJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Label %" PetscInt_FMT " name %s does not match new name %s", l, name, ul->names[l]); 78050fdc7489SMatthew Knepley } 78060fdc7489SMatthew Knepley } 78073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78080fdc7489SMatthew Knepley } 78090fdc7489SMatthew Knepley 7810d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelSetLabelValue(DMUniversalLabel ul, DM dm, PetscBool useIndex, PetscInt p, PetscInt value) 7811d71ae5a4SJacob Faibussowitsch { 78120fdc7489SMatthew Knepley PetscInt l; 78130fdc7489SMatthew Knepley 78140fdc7489SMatthew Knepley PetscFunctionBegin; 78150fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 78160fdc7489SMatthew Knepley DMLabel label; 78170fdc7489SMatthew Knepley PetscInt lval = (value & ul->masks[l]) >> ul->bits[l]; 78180fdc7489SMatthew Knepley 78190fdc7489SMatthew Knepley if (lval) { 78209566063dSJacob Faibussowitsch if (useIndex) PetscCall(DMGetLabelByNum(dm, ul->indices[l], &label)); 78219566063dSJacob Faibussowitsch else PetscCall(DMGetLabel(dm, ul->names[l], &label)); 78229566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, ul->values[ul->offsets[l] + lval - 1])); 78230fdc7489SMatthew Knepley } 78240fdc7489SMatthew Knepley } 78253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78260fdc7489SMatthew Knepley } 7827a8fb8f29SToby Isaac 7828a8fb8f29SToby Isaac /*@ 7829bb7acecfSBarry Smith DMGetCoarseDM - Get the coarse `DM`from which this `DM` was obtained by refinement 7830bb7acecfSBarry Smith 783120f4b53cSBarry Smith Not Collective 7832a8fb8f29SToby Isaac 7833a8fb8f29SToby Isaac Input Parameter: 7834bb7acecfSBarry Smith . dm - The `DM` object 7835a8fb8f29SToby Isaac 7836a8fb8f29SToby Isaac Output Parameter: 7837bb7acecfSBarry Smith . cdm - The coarse `DM` 7838a8fb8f29SToby Isaac 7839a8fb8f29SToby Isaac Level: intermediate 7840a8fb8f29SToby Isaac 78411cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetCoarseDM()`, `DMCoarsen()` 7842a8fb8f29SToby Isaac @*/ 7843d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarseDM(DM dm, DM *cdm) 7844d71ae5a4SJacob Faibussowitsch { 7845a8fb8f29SToby Isaac PetscFunctionBegin; 7846a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 78474f572ea9SToby Isaac PetscAssertPointer(cdm, 2); 7848a8fb8f29SToby Isaac *cdm = dm->coarseMesh; 78493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7850a8fb8f29SToby Isaac } 7851a8fb8f29SToby Isaac 7852a8fb8f29SToby Isaac /*@ 7853bb7acecfSBarry Smith DMSetCoarseDM - Set the coarse `DM` from which this `DM` was obtained by refinement 7854a8fb8f29SToby Isaac 7855a8fb8f29SToby Isaac Input Parameters: 7856bb7acecfSBarry Smith + dm - The `DM` object 7857bb7acecfSBarry Smith - cdm - The coarse `DM` 7858a8fb8f29SToby Isaac 7859a8fb8f29SToby Isaac Level: intermediate 7860a8fb8f29SToby Isaac 7861bb7acecfSBarry Smith Note: 7862bb7acecfSBarry Smith Normally this is set automatically by `DMRefine()` 7863bb7acecfSBarry Smith 78641cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCoarseDM()`, `DMCoarsen()`, `DMSetRefine()`, `DMSetFineDM()` 7865a8fb8f29SToby Isaac @*/ 7866d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarseDM(DM dm, DM cdm) 7867d71ae5a4SJacob Faibussowitsch { 7868a8fb8f29SToby Isaac PetscFunctionBegin; 7869a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7870a8fb8f29SToby Isaac if (cdm) PetscValidHeaderSpecific(cdm, DM_CLASSID, 2); 787189d734beSBarry Smith if (dm == cdm) cdm = NULL; 78729566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)cdm)); 78739566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->coarseMesh)); 7874a8fb8f29SToby Isaac dm->coarseMesh = cdm; 78753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7876a8fb8f29SToby Isaac } 7877a8fb8f29SToby Isaac 787888bdff64SToby Isaac /*@ 7879bb7acecfSBarry Smith DMGetFineDM - Get the fine mesh from which this `DM` was obtained by coarsening 788088bdff64SToby Isaac 788188bdff64SToby Isaac Input Parameter: 7882bb7acecfSBarry Smith . dm - The `DM` object 788388bdff64SToby Isaac 788488bdff64SToby Isaac Output Parameter: 7885bb7acecfSBarry Smith . fdm - The fine `DM` 788688bdff64SToby Isaac 788788bdff64SToby Isaac Level: intermediate 788888bdff64SToby Isaac 78891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetFineDM()`, `DMCoarsen()`, `DMRefine()` 789088bdff64SToby Isaac @*/ 7891d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFineDM(DM dm, DM *fdm) 7892d71ae5a4SJacob Faibussowitsch { 789388bdff64SToby Isaac PetscFunctionBegin; 789488bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 78954f572ea9SToby Isaac PetscAssertPointer(fdm, 2); 789688bdff64SToby Isaac *fdm = dm->fineMesh; 78973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 789888bdff64SToby Isaac } 789988bdff64SToby Isaac 790088bdff64SToby Isaac /*@ 7901bb7acecfSBarry Smith DMSetFineDM - Set the fine mesh from which this was obtained by coarsening 790288bdff64SToby Isaac 790388bdff64SToby Isaac Input Parameters: 7904bb7acecfSBarry Smith + dm - The `DM` object 7905bb7acecfSBarry Smith - fdm - The fine `DM` 790688bdff64SToby Isaac 7907bb7acecfSBarry Smith Level: developer 790888bdff64SToby Isaac 7909bb7acecfSBarry Smith Note: 7910bb7acecfSBarry Smith Normally this is set automatically by `DMCoarsen()` 7911bb7acecfSBarry Smith 79121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFineDM()`, `DMCoarsen()`, `DMRefine()` 791388bdff64SToby Isaac @*/ 7914d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFineDM(DM dm, DM fdm) 7915d71ae5a4SJacob Faibussowitsch { 791688bdff64SToby Isaac PetscFunctionBegin; 791788bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 791888bdff64SToby Isaac if (fdm) PetscValidHeaderSpecific(fdm, DM_CLASSID, 2); 791989d734beSBarry Smith if (dm == fdm) fdm = NULL; 79209566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fdm)); 79219566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->fineMesh)); 792288bdff64SToby Isaac dm->fineMesh = fdm; 79233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 792488bdff64SToby Isaac } 792588bdff64SToby Isaac 7926a6ba4734SToby Isaac /*@C 7927bb7acecfSBarry Smith DMAddBoundary - Add a boundary condition to a model represented by a `DM` 7928a6ba4734SToby Isaac 792920f4b53cSBarry Smith Collective 7930783e2ec8SMatthew G. Knepley 7931a6ba4734SToby Isaac Input Parameters: 7932bb7acecfSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 7933bb7acecfSBarry Smith . type - The type of condition, e.g. `DM_BC_ESSENTIAL_ANALYTIC`, `DM_BC_ESSENTIAL_FIELD` (Dirichlet), or `DM_BC_NATURAL` (Neumann) 7934a6ba4734SToby Isaac . name - The BC name 793545480ffeSMatthew G. Knepley . label - The label defining constrained points 7936bb7acecfSBarry Smith . Nv - The number of `DMLabel` values for constrained points 793745480ffeSMatthew G. Knepley . values - An array of values for constrained points 7938a6ba4734SToby Isaac . field - The field to constrain 793945480ffeSMatthew G. Knepley . Nc - The number of constrained field components (0 will constrain all fields) 7940a6ba4734SToby Isaac . comps - An array of constrained component numbers 7941a6ba4734SToby Isaac . bcFunc - A pointwise function giving boundary values 794256cf3b9cSMatthew G. Knepley . bcFunc_t - A pointwise function giving the time deriative of the boundary values, or NULL 7943a6ba4734SToby Isaac - ctx - An optional user context for bcFunc 7944a6ba4734SToby Isaac 794545480ffeSMatthew G. Knepley Output Parameter: 794645480ffeSMatthew G. Knepley . bd - (Optional) Boundary number 794745480ffeSMatthew G. Knepley 7948a6ba4734SToby Isaac Options Database Keys: 7949a6ba4734SToby Isaac + -bc_<boundary name> <num> - Overrides the boundary ids 7950a6ba4734SToby Isaac - -bc_<boundary name>_comp <num> - Overrides the boundary components 7951a6ba4734SToby Isaac 795220f4b53cSBarry Smith Level: intermediate 795320f4b53cSBarry Smith 7954bb7acecfSBarry Smith Notes: 7955aeebefc2SPierre Jolivet Both bcFunc and bcFunc_t will depend on the boundary condition type. If the type if `DM_BC_ESSENTIAL`, then the calling sequence is\: 795673ff1848SBarry Smith .vb 795773ff1848SBarry Smith void bcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[]) 795873ff1848SBarry Smith .ve 795956cf3b9cSMatthew G. Knepley 7960a4e35b19SJacob Faibussowitsch If the type is `DM_BC_ESSENTIAL_FIELD` or other _FIELD value, then the calling sequence is\: 796156cf3b9cSMatthew G. Knepley 796220f4b53cSBarry Smith .vb 796320f4b53cSBarry Smith void bcFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux, 796420f4b53cSBarry Smith const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 796520f4b53cSBarry Smith const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 796620f4b53cSBarry Smith PetscReal time, const PetscReal x[], PetscScalar bcval[]) 796720f4b53cSBarry Smith .ve 796856cf3b9cSMatthew G. Knepley + dim - the spatial dimension 796956cf3b9cSMatthew G. Knepley . Nf - the number of fields 797056cf3b9cSMatthew G. Knepley . uOff - the offset into u[] and u_t[] for each field 797156cf3b9cSMatthew G. Knepley . uOff_x - the offset into u_x[] for each field 797256cf3b9cSMatthew G. Knepley . u - each field evaluated at the current point 797356cf3b9cSMatthew G. Knepley . u_t - the time derivative of each field evaluated at the current point 797456cf3b9cSMatthew G. Knepley . u_x - the gradient of each field evaluated at the current point 797556cf3b9cSMatthew G. Knepley . aOff - the offset into a[] and a_t[] for each auxiliary field 797656cf3b9cSMatthew G. Knepley . aOff_x - the offset into a_x[] for each auxiliary field 797756cf3b9cSMatthew G. Knepley . a - each auxiliary field evaluated at the current point 797856cf3b9cSMatthew G. Knepley . a_t - the time derivative of each auxiliary field evaluated at the current point 797956cf3b9cSMatthew G. Knepley . a_x - the gradient of auxiliary each field evaluated at the current point 798056cf3b9cSMatthew G. Knepley . t - current time 798156cf3b9cSMatthew G. Knepley . x - coordinates of the current point 798256cf3b9cSMatthew G. Knepley . numConstants - number of constant parameters 798356cf3b9cSMatthew G. Knepley . constants - constant parameters 798456cf3b9cSMatthew G. Knepley - bcval - output values at the current point 798556cf3b9cSMatthew G. Knepley 79861cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DSGetBoundary()`, `PetscDSAddBoundary()` 7987a6ba4734SToby Isaac @*/ 7988d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddBoundary(DM dm, DMBoundaryConditionType type, const char name[], DMLabel label, PetscInt Nv, const PetscInt values[], PetscInt field, PetscInt Nc, const PetscInt comps[], void (*bcFunc)(void), void (*bcFunc_t)(void), void *ctx, PetscInt *bd) 7989d71ae5a4SJacob Faibussowitsch { 7990e5e52638SMatthew G. Knepley PetscDS ds; 7991a6ba4734SToby Isaac 7992a6ba4734SToby Isaac PetscFunctionBegin; 7993a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7994783e2ec8SMatthew G. Knepley PetscValidLogicalCollectiveEnum(dm, type, 2); 799545480ffeSMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 4); 799645480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nv, 5); 799745480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, field, 7); 799845480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 8); 799901a5d20dSJed Brown PetscCheck(!dm->localSection, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot add boundary to DM after creating local section"); 80009566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 8001799db056SMatthew G. Knepley /* Complete label */ 8002799db056SMatthew G. Knepley if (label) { 8003799db056SMatthew G. Knepley PetscObject obj; 8004799db056SMatthew G. Knepley PetscClassId id; 8005799db056SMatthew G. Knepley 8006799db056SMatthew G. Knepley PetscCall(DMGetField(dm, field, NULL, &obj)); 8007799db056SMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 8008799db056SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 8009799db056SMatthew G. Knepley DM plex; 8010799db056SMatthew G. Knepley 8011799db056SMatthew G. Knepley PetscCall(DMConvert(dm, DMPLEX, &plex)); 8012799db056SMatthew G. Knepley if (plex) PetscCall(DMPlexLabelComplete(plex, label)); 8013799db056SMatthew G. Knepley PetscCall(DMDestroy(&plex)); 8014799db056SMatthew G. Knepley } 8015799db056SMatthew G. Knepley } 80169566063dSJacob Faibussowitsch PetscCall(PetscDSAddBoundary(ds, type, name, label, Nv, values, field, Nc, comps, bcFunc, bcFunc_t, ctx, bd)); 80173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8018a6ba4734SToby Isaac } 8019a6ba4734SToby Isaac 802045480ffeSMatthew G. Knepley /* TODO Remove this since now the structures are the same */ 8021d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPopulateBoundary(DM dm) 8022d71ae5a4SJacob Faibussowitsch { 8023e5e52638SMatthew G. Knepley PetscDS ds; 8024dff059c6SToby Isaac DMBoundary *lastnext; 8025e6f8dbb6SToby Isaac DSBoundary dsbound; 8026e6f8dbb6SToby Isaac 8027e6f8dbb6SToby Isaac PetscFunctionBegin; 80289566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 8029e5e52638SMatthew G. Knepley dsbound = ds->boundary; 803047a1f5adSToby Isaac if (dm->boundary) { 803147a1f5adSToby Isaac DMBoundary next = dm->boundary; 803247a1f5adSToby Isaac 803347a1f5adSToby Isaac /* quick check to see if the PetscDS has changed */ 80343ba16761SJacob Faibussowitsch if (next->dsboundary == dsbound) PetscFunctionReturn(PETSC_SUCCESS); 803547a1f5adSToby Isaac /* the PetscDS has changed: tear down and rebuild */ 803647a1f5adSToby Isaac while (next) { 803747a1f5adSToby Isaac DMBoundary b = next; 803847a1f5adSToby Isaac 803947a1f5adSToby Isaac next = b->next; 80409566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 8041a6ba4734SToby Isaac } 804247a1f5adSToby Isaac dm->boundary = NULL; 8043a6ba4734SToby Isaac } 804447a1f5adSToby Isaac 8045f4f49eeaSPierre Jolivet lastnext = &dm->boundary; 8046e6f8dbb6SToby Isaac while (dsbound) { 8047e6f8dbb6SToby Isaac DMBoundary dmbound; 8048e6f8dbb6SToby Isaac 80499566063dSJacob Faibussowitsch PetscCall(PetscNew(&dmbound)); 8050e6f8dbb6SToby Isaac dmbound->dsboundary = dsbound; 805145480ffeSMatthew G. Knepley dmbound->label = dsbound->label; 805247a1f5adSToby Isaac /* push on the back instead of the front so that it is in the same order as in the PetscDS */ 8053dff059c6SToby Isaac *lastnext = dmbound; 8054f4f49eeaSPierre Jolivet lastnext = &dmbound->next; 8055dff059c6SToby Isaac dsbound = dsbound->next; 8056a6ba4734SToby Isaac } 80573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8058a6ba4734SToby Isaac } 8059a6ba4734SToby Isaac 8060bb7acecfSBarry Smith /* TODO: missing manual page */ 8061d71ae5a4SJacob Faibussowitsch PetscErrorCode DMIsBoundaryPoint(DM dm, PetscInt point, PetscBool *isBd) 8062d71ae5a4SJacob Faibussowitsch { 8063b95f2879SToby Isaac DMBoundary b; 8064a6ba4734SToby Isaac 8065a6ba4734SToby Isaac PetscFunctionBegin; 8066a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 80674f572ea9SToby Isaac PetscAssertPointer(isBd, 3); 8068a6ba4734SToby Isaac *isBd = PETSC_FALSE; 80699566063dSJacob Faibussowitsch PetscCall(DMPopulateBoundary(dm)); 8070b95f2879SToby Isaac b = dm->boundary; 807157508eceSPierre Jolivet while (b && !*isBd) { 8072e6f8dbb6SToby Isaac DMLabel label = b->label; 8073e6f8dbb6SToby Isaac DSBoundary dsb = b->dsboundary; 8074a6ba4734SToby Isaac PetscInt i; 8075a6ba4734SToby Isaac 807645480ffeSMatthew G. Knepley if (label) { 807757508eceSPierre Jolivet for (i = 0; i < dsb->Nv && !*isBd; ++i) PetscCall(DMLabelStratumHasPoint(label, dsb->values[i], point, isBd)); 8078a6ba4734SToby Isaac } 8079a6ba4734SToby Isaac b = b->next; 8080a6ba4734SToby Isaac } 80813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8082a6ba4734SToby Isaac } 80834d6f44ffSToby Isaac 80844d6f44ffSToby Isaac /*@C 8085bb7acecfSBarry Smith DMProjectFunction - This projects the given function into the function space provided by a `DM`, putting the coefficients in a global vector. 8086a6e0b375SMatthew G. Knepley 808720f4b53cSBarry Smith Collective 80884d6f44ffSToby Isaac 80894d6f44ffSToby Isaac Input Parameters: 8090bb7acecfSBarry Smith + dm - The `DM` 80910709b2feSToby Isaac . time - The time 80924d6f44ffSToby Isaac . funcs - The coordinate functions to evaluate, one per field 80934d6f44ffSToby Isaac . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 80944d6f44ffSToby Isaac - mode - The insertion mode for values 80954d6f44ffSToby Isaac 80964d6f44ffSToby Isaac Output Parameter: 80974d6f44ffSToby Isaac . X - vector 80984d6f44ffSToby Isaac 809920f4b53cSBarry Smith Calling sequence of `funcs`: 81004d6f44ffSToby Isaac + dim - The spatial dimension 81018ec8862eSJed Brown . time - The time at which to sample 81024d6f44ffSToby Isaac . x - The coordinates 810377b739a6SMatthew Knepley . Nc - The number of components 81044d6f44ffSToby Isaac . u - The output field values 81054d6f44ffSToby Isaac - ctx - optional user-defined function context 81064d6f44ffSToby Isaac 81074d6f44ffSToby Isaac Level: developer 81084d6f44ffSToby Isaac 8109bb7acecfSBarry Smith Developer Notes: 8110bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8111bb7acecfSBarry Smith 8112bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8113bb7acecfSBarry Smith 81141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 81154d6f44ffSToby Isaac @*/ 8116a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunction(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X) 8117d71ae5a4SJacob Faibussowitsch { 81184d6f44ffSToby Isaac Vec localX; 81194d6f44ffSToby Isaac 81204d6f44ffSToby Isaac PetscFunctionBegin; 81214d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8122708be2fdSJed Brown PetscCall(PetscLogEventBegin(DM_ProjectFunction, dm, X, 0, 0)); 81239566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 8124f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 81259566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, mode, localX)); 81269566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 81279566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 81289566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 8129708be2fdSJed Brown PetscCall(PetscLogEventEnd(DM_ProjectFunction, dm, X, 0, 0)); 81303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 81314d6f44ffSToby Isaac } 81324d6f44ffSToby Isaac 8133a6e0b375SMatthew G. Knepley /*@C 8134bb7acecfSBarry Smith DMProjectFunctionLocal - This projects the given function into the function space provided by a `DM`, putting the coefficients in a local vector. 8135a6e0b375SMatthew G. Knepley 813620f4b53cSBarry Smith Not Collective 8137a6e0b375SMatthew G. Knepley 8138a6e0b375SMatthew G. Knepley Input Parameters: 8139bb7acecfSBarry Smith + dm - The `DM` 8140a6e0b375SMatthew G. Knepley . time - The time 8141a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8142a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 8143a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8144a6e0b375SMatthew G. Knepley 8145a6e0b375SMatthew G. Knepley Output Parameter: 8146a6e0b375SMatthew G. Knepley . localX - vector 8147a6e0b375SMatthew G. Knepley 814820f4b53cSBarry Smith Calling sequence of `funcs`: 8149a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8150a4e35b19SJacob Faibussowitsch . time - The current timestep 8151a6e0b375SMatthew G. Knepley . x - The coordinates 815277b739a6SMatthew Knepley . Nc - The number of components 8153a6e0b375SMatthew G. Knepley . u - The output field values 8154a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8155a6e0b375SMatthew G. Knepley 8156a6e0b375SMatthew G. Knepley Level: developer 8157a6e0b375SMatthew G. Knepley 8158bb7acecfSBarry Smith Developer Notes: 8159bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8160bb7acecfSBarry Smith 8161bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8162bb7acecfSBarry Smith 81631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 8164a6e0b375SMatthew G. Knepley @*/ 8165a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX) 8166d71ae5a4SJacob Faibussowitsch { 81674d6f44ffSToby Isaac PetscFunctionBegin; 81684d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8169064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 8170fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfunctionlocal, time, funcs, ctxs, mode, localX); 81713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 81724d6f44ffSToby Isaac } 81734d6f44ffSToby Isaac 8174a6e0b375SMatthew G. Knepley /*@C 8175bb7acecfSBarry Smith DMProjectFunctionLabel - This projects the given function into the function space provided by the `DM`, putting the coefficients in a global vector, setting values only for points in the given label. 8176a6e0b375SMatthew G. Knepley 817720f4b53cSBarry Smith Collective 8178a6e0b375SMatthew G. Knepley 8179a6e0b375SMatthew G. Knepley Input Parameters: 8180bb7acecfSBarry Smith + dm - The `DM` 8181a6e0b375SMatthew G. Knepley . time - The time 8182a4e35b19SJacob Faibussowitsch . numIds - The number of ids 8183a4e35b19SJacob Faibussowitsch . ids - The ids 8184a4e35b19SJacob Faibussowitsch . Nc - The number of components 8185a4e35b19SJacob Faibussowitsch . comps - The components 8186bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8187a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8188bb7acecfSBarry Smith . ctxs - Optional array of contexts to pass to each coordinate function. ctxs may be null. 8189a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8190a6e0b375SMatthew G. Knepley 8191a6e0b375SMatthew G. Knepley Output Parameter: 8192a6e0b375SMatthew G. Knepley . X - vector 8193a6e0b375SMatthew G. Knepley 819420f4b53cSBarry Smith Calling sequence of `funcs`: 8195a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8196a4e35b19SJacob Faibussowitsch . time - The current timestep 8197a6e0b375SMatthew G. Knepley . x - The coordinates 819877b739a6SMatthew Knepley . Nc - The number of components 8199a6e0b375SMatthew G. Knepley . u - The output field values 8200a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8201a6e0b375SMatthew G. Knepley 8202a6e0b375SMatthew G. Knepley Level: developer 8203a6e0b375SMatthew G. Knepley 8204bb7acecfSBarry Smith Developer Notes: 8205bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8206bb7acecfSBarry Smith 8207bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8208bb7acecfSBarry Smith 82091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`, `DMComputeL2Diff()` 8210a6e0b375SMatthew G. Knepley @*/ 8211a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X) 8212d71ae5a4SJacob Faibussowitsch { 82132c53366bSMatthew G. Knepley Vec localX; 82142c53366bSMatthew G. Knepley 82152c53366bSMatthew G. Knepley PetscFunctionBegin; 82162c53366bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 82179566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 8218f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 82199566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX)); 82209566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 82219566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 82229566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 82233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82242c53366bSMatthew G. Knepley } 82252c53366bSMatthew G. Knepley 8226a6e0b375SMatthew G. Knepley /*@C 8227bb7acecfSBarry Smith DMProjectFunctionLabelLocal - This projects the given function into the function space provided by the `DM`, putting the coefficients in a local vector, setting values only for points in the given label. 8228a6e0b375SMatthew G. Knepley 822920f4b53cSBarry Smith Not Collective 8230a6e0b375SMatthew G. Knepley 8231a6e0b375SMatthew G. Knepley Input Parameters: 8232bb7acecfSBarry Smith + dm - The `DM` 8233a6e0b375SMatthew G. Knepley . time - The time 8234bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8235a4e35b19SJacob Faibussowitsch . numIds - The number of ids 8236a4e35b19SJacob Faibussowitsch . ids - The ids 8237a4e35b19SJacob Faibussowitsch . Nc - The number of components 8238a4e35b19SJacob Faibussowitsch . comps - The components 8239a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8240a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 8241a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8242a6e0b375SMatthew G. Knepley 8243a6e0b375SMatthew G. Knepley Output Parameter: 8244a6e0b375SMatthew G. Knepley . localX - vector 8245a6e0b375SMatthew G. Knepley 824620f4b53cSBarry Smith Calling sequence of `funcs`: 8247a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8248a4e35b19SJacob Faibussowitsch . time - The current time 8249a6e0b375SMatthew G. Knepley . x - The coordinates 825077b739a6SMatthew Knepley . Nc - The number of components 8251a6e0b375SMatthew G. Knepley . u - The output field values 8252a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8253a6e0b375SMatthew G. Knepley 8254a6e0b375SMatthew G. Knepley Level: developer 8255a6e0b375SMatthew G. Knepley 8256bb7acecfSBarry Smith Developer Notes: 8257bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8258bb7acecfSBarry Smith 8259bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8260bb7acecfSBarry Smith 82611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 8262a6e0b375SMatthew G. Knepley @*/ 8263a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX) 8264d71ae5a4SJacob Faibussowitsch { 82654d6f44ffSToby Isaac PetscFunctionBegin; 82664d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8267064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8268fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfunctionlabellocal, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX); 82693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82704d6f44ffSToby Isaac } 82712716604bSToby Isaac 8272a6e0b375SMatthew G. Knepley /*@C 8273bb7acecfSBarry Smith DMProjectFieldLocal - This projects the given function of the input fields into the function space provided by the `DM`, putting the coefficients in a local vector. 8274a6e0b375SMatthew G. Knepley 827520f4b53cSBarry Smith Not Collective 8276a6e0b375SMatthew G. Knepley 8277a6e0b375SMatthew G. Knepley Input Parameters: 8278bb7acecfSBarry Smith + dm - The `DM` 8279a6e0b375SMatthew G. Knepley . time - The time 828020f4b53cSBarry Smith . localU - The input field vector; may be `NULL` if projection is defined purely by coordinates 8281a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8282a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8283a6e0b375SMatthew G. Knepley 8284a6e0b375SMatthew G. Knepley Output Parameter: 8285a6e0b375SMatthew G. Knepley . localX - The output vector 8286a6e0b375SMatthew G. Knepley 828720f4b53cSBarry Smith Calling sequence of `funcs`: 8288a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8289a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8290a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8291a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8292a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8293a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8294a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8295a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8296a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8297a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8298a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8299a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8300a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8301a6e0b375SMatthew G. Knepley . t - The current time 8302a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8303a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8304a6e0b375SMatthew G. Knepley . constants - The value of each constant 8305a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8306a6e0b375SMatthew G. Knepley 830773ff1848SBarry Smith Level: intermediate 830873ff1848SBarry Smith 8309bb7acecfSBarry Smith Note: 8310bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8311bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8312bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8313a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8314a6e0b375SMatthew G. Knepley 8315bb7acecfSBarry Smith Developer Notes: 8316bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8317bb7acecfSBarry Smith 8318bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8319bb7acecfSBarry Smith 8320a4e35b19SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, 8321a4e35b19SJacob Faibussowitsch `DMProjectFunction()`, `DMComputeL2Diff()` 8322a6e0b375SMatthew G. Knepley @*/ 8323a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLocal(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8324d71ae5a4SJacob Faibussowitsch { 83258c6c5593SMatthew G. Knepley PetscFunctionBegin; 83268c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8327eb8f539aSJed Brown if (localU) PetscValidHeaderSpecific(localU, VEC_CLASSID, 3); 83288c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 8329fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfieldlocal, time, localU, funcs, mode, localX); 83303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 83318c6c5593SMatthew G. Knepley } 83328c6c5593SMatthew G. Knepley 8333a6e0b375SMatthew G. Knepley /*@C 8334a6e0b375SMatthew G. Knepley DMProjectFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain specified by the label. 8335a6e0b375SMatthew G. Knepley 833620f4b53cSBarry Smith Not Collective 8337a6e0b375SMatthew G. Knepley 8338a6e0b375SMatthew G. Knepley Input Parameters: 8339bb7acecfSBarry Smith + dm - The `DM` 8340a6e0b375SMatthew G. Knepley . time - The time 8341bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8342a6e0b375SMatthew G. Knepley . numIds - The number of label ids to use 8343a6e0b375SMatthew G. Knepley . ids - The label ids to use for marking 8344bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 834520f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8346a6e0b375SMatthew G. Knepley . localU - The input field vector 8347a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8348a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8349a6e0b375SMatthew G. Knepley 8350a6e0b375SMatthew G. Knepley Output Parameter: 8351a6e0b375SMatthew G. Knepley . localX - The output vector 8352a6e0b375SMatthew G. Knepley 835320f4b53cSBarry Smith Calling sequence of `funcs`: 8354a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8355a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8356a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8357a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8358a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8359a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8360a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8361a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8362a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8363a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8364a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8365a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8366a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8367a6e0b375SMatthew G. Knepley . t - The current time 8368a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8369a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8370a6e0b375SMatthew G. Knepley . constants - The value of each constant 8371a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8372a6e0b375SMatthew G. Knepley 837373ff1848SBarry Smith Level: intermediate 837473ff1848SBarry Smith 8375bb7acecfSBarry Smith Note: 8376bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8377bb7acecfSBarry Smith The input `DM`, attached to localU, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8378bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8379a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8380a6e0b375SMatthew G. Knepley 8381bb7acecfSBarry Smith Developer Notes: 8382bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8383bb7acecfSBarry Smith 8384bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8385bb7acecfSBarry Smith 83861cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabel()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8387a6e0b375SMatthew G. Knepley @*/ 8388a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8389d71ae5a4SJacob Faibussowitsch { 83908c6c5593SMatthew G. Knepley PetscFunctionBegin; 83918c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8392064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8393064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8394fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX); 83953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 83968c6c5593SMatthew G. Knepley } 83978c6c5593SMatthew G. Knepley 83982716604bSToby Isaac /*@C 8399d29d7c6eSMatthew G. Knepley DMProjectFieldLabel - This projects the given function of the input fields into the function space provided, putting the coefficients in a global vector, calculating only over the portion of the domain specified by the label. 8400d29d7c6eSMatthew G. Knepley 840120f4b53cSBarry Smith Not Collective 8402d29d7c6eSMatthew G. Knepley 8403d29d7c6eSMatthew G. Knepley Input Parameters: 8404bb7acecfSBarry Smith + dm - The `DM` 8405d29d7c6eSMatthew G. Knepley . time - The time 8406bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8407d29d7c6eSMatthew G. Knepley . numIds - The number of label ids to use 8408d29d7c6eSMatthew G. Knepley . ids - The label ids to use for marking 8409bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 841020f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8411d29d7c6eSMatthew G. Knepley . U - The input field vector 8412d29d7c6eSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8413d29d7c6eSMatthew G. Knepley - mode - The insertion mode for values 8414d29d7c6eSMatthew G. Knepley 8415d29d7c6eSMatthew G. Knepley Output Parameter: 8416d29d7c6eSMatthew G. Knepley . X - The output vector 8417d29d7c6eSMatthew G. Knepley 841820f4b53cSBarry Smith Calling sequence of `funcs`: 8419d29d7c6eSMatthew G. Knepley + dim - The spatial dimension 8420d29d7c6eSMatthew G. Knepley . Nf - The number of input fields 8421d29d7c6eSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8422d29d7c6eSMatthew G. Knepley . uOff - The offset of each field in u[] 8423d29d7c6eSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8424d29d7c6eSMatthew G. Knepley . u - The field values at this point in space 8425d29d7c6eSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8426d29d7c6eSMatthew G. Knepley . u_x - The field derivatives at this point in space 8427d29d7c6eSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8428d29d7c6eSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8429d29d7c6eSMatthew G. Knepley . a - The auxiliary field values at this point in space 8430d29d7c6eSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8431d29d7c6eSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8432d29d7c6eSMatthew G. Knepley . t - The current time 8433d29d7c6eSMatthew G. Knepley . x - The coordinates of this point 8434d29d7c6eSMatthew G. Knepley . numConstants - The number of constants 8435d29d7c6eSMatthew G. Knepley . constants - The value of each constant 8436d29d7c6eSMatthew G. Knepley - f - The value of the function at this point in space 8437d29d7c6eSMatthew G. Knepley 843873ff1848SBarry Smith Level: intermediate 843973ff1848SBarry Smith 8440bb7acecfSBarry Smith Note: 8441bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8442bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8443bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8444d29d7c6eSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8445d29d7c6eSMatthew G. Knepley 8446bb7acecfSBarry Smith Developer Notes: 8447bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8448bb7acecfSBarry Smith 8449bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8450bb7acecfSBarry Smith 84511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8452d29d7c6eSMatthew G. Knepley @*/ 8453a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec U, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec X) 8454d71ae5a4SJacob Faibussowitsch { 8455d29d7c6eSMatthew G. Knepley DM dmIn; 8456d29d7c6eSMatthew G. Knepley Vec localU, localX; 8457d29d7c6eSMatthew G. Knepley 8458d29d7c6eSMatthew G. Knepley PetscFunctionBegin; 8459d29d7c6eSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8460d29d7c6eSMatthew G. Knepley PetscCall(VecGetDM(U, &dmIn)); 8461d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dmIn, &localU)); 8462d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &localX)); 8463f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 846472fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalBegin(dmIn, U, mode, localU)); 846572fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalEnd(dmIn, U, mode, localU)); 8466d29d7c6eSMatthew G. Knepley PetscCall(DMProjectFieldLabelLocal(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX)); 8467d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 8468d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 8469d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &localX)); 8470d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dmIn, &localU)); 84713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8472d29d7c6eSMatthew G. Knepley } 8473d29d7c6eSMatthew G. Knepley 8474d29d7c6eSMatthew G. Knepley /*@C 8475ece3a9fcSMatthew G. Knepley DMProjectBdFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain boundary specified by the label. 8476ece3a9fcSMatthew G. Knepley 847720f4b53cSBarry Smith Not Collective 8478ece3a9fcSMatthew G. Knepley 8479ece3a9fcSMatthew G. Knepley Input Parameters: 8480bb7acecfSBarry Smith + dm - The `DM` 8481ece3a9fcSMatthew G. Knepley . time - The time 8482bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain boundary to output 8483ece3a9fcSMatthew G. Knepley . numIds - The number of label ids to use 8484ece3a9fcSMatthew G. Knepley . ids - The label ids to use for marking 8485bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 848620f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8487ece3a9fcSMatthew G. Knepley . localU - The input field vector 8488ece3a9fcSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8489ece3a9fcSMatthew G. Knepley - mode - The insertion mode for values 8490ece3a9fcSMatthew G. Knepley 8491ece3a9fcSMatthew G. Knepley Output Parameter: 8492ece3a9fcSMatthew G. Knepley . localX - The output vector 8493ece3a9fcSMatthew G. Knepley 849420f4b53cSBarry Smith Calling sequence of `funcs`: 8495ece3a9fcSMatthew G. Knepley + dim - The spatial dimension 8496ece3a9fcSMatthew G. Knepley . Nf - The number of input fields 8497ece3a9fcSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8498ece3a9fcSMatthew G. Knepley . uOff - The offset of each field in u[] 8499ece3a9fcSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8500ece3a9fcSMatthew G. Knepley . u - The field values at this point in space 8501ece3a9fcSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8502ece3a9fcSMatthew G. Knepley . u_x - The field derivatives at this point in space 8503ece3a9fcSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8504ece3a9fcSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8505ece3a9fcSMatthew G. Knepley . a - The auxiliary field values at this point in space 8506ece3a9fcSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8507ece3a9fcSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8508ece3a9fcSMatthew G. Knepley . t - The current time 8509ece3a9fcSMatthew G. Knepley . x - The coordinates of this point 8510ece3a9fcSMatthew G. Knepley . n - The face normal 8511ece3a9fcSMatthew G. Knepley . numConstants - The number of constants 8512ece3a9fcSMatthew G. Knepley . constants - The value of each constant 8513ece3a9fcSMatthew G. Knepley - f - The value of the function at this point in space 8514ece3a9fcSMatthew G. Knepley 851573ff1848SBarry Smith Level: intermediate 851673ff1848SBarry Smith 8517ece3a9fcSMatthew G. Knepley Note: 8518bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8519bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8520bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8521ece3a9fcSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8522ece3a9fcSMatthew G. Knepley 8523bb7acecfSBarry Smith Developer Notes: 8524bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8525bb7acecfSBarry Smith 8526bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8527bb7acecfSBarry Smith 85281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8529ece3a9fcSMatthew G. Knepley @*/ 8530a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectBdFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8531d71ae5a4SJacob Faibussowitsch { 8532ece3a9fcSMatthew G. Knepley PetscFunctionBegin; 8533ece3a9fcSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8534064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8535064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8536fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectbdfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX); 85373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8538ece3a9fcSMatthew G. Knepley } 8539ece3a9fcSMatthew G. Knepley 8540ece3a9fcSMatthew G. Knepley /*@C 85412716604bSToby Isaac DMComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 85422716604bSToby Isaac 854320f4b53cSBarry Smith Collective 8544bb7acecfSBarry Smith 85452716604bSToby Isaac Input Parameters: 8546bb7acecfSBarry Smith + dm - The `DM` 85470709b2feSToby Isaac . time - The time 85482716604bSToby Isaac . funcs - The functions to evaluate for each field component 85492716604bSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8550574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 85512716604bSToby Isaac 85522716604bSToby Isaac Output Parameter: 85532716604bSToby Isaac . diff - The diff ||u - u_h||_2 85542716604bSToby Isaac 85552716604bSToby Isaac Level: developer 85562716604bSToby Isaac 8557bb7acecfSBarry Smith Developer Notes: 8558bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8559bb7acecfSBarry Smith 8560bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8561bb7acecfSBarry Smith 85621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 85632716604bSToby Isaac @*/ 8564d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 8565d71ae5a4SJacob Faibussowitsch { 85662716604bSToby Isaac PetscFunctionBegin; 85672716604bSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8568b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8569fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2diff, time, funcs, ctxs, X, diff); 85703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 85712716604bSToby Isaac } 8572b698f381SToby Isaac 8573b698f381SToby Isaac /*@C 8574b698f381SToby Isaac DMComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h. 8575b698f381SToby Isaac 857620f4b53cSBarry Smith Collective 8577d083f849SBarry Smith 8578b698f381SToby Isaac Input Parameters: 8579bb7acecfSBarry Smith + dm - The `DM` 8580a4e35b19SJacob Faibussowitsch . time - The time 8581b698f381SToby Isaac . funcs - The gradient functions to evaluate for each field component 8582b698f381SToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8583574a98acSMatthew G. Knepley . X - The coefficient vector u_h, a global vector 8584b698f381SToby Isaac - n - The vector to project along 8585b698f381SToby Isaac 8586b698f381SToby Isaac Output Parameter: 8587b698f381SToby Isaac . diff - The diff ||(grad u - grad u_h) . n||_2 8588b698f381SToby Isaac 8589b698f381SToby Isaac Level: developer 8590b698f381SToby Isaac 8591bb7acecfSBarry Smith Developer Notes: 8592bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8593bb7acecfSBarry Smith 8594bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8595bb7acecfSBarry Smith 85961cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMComputeL2FieldDiff()` 8597b698f381SToby Isaac @*/ 8598d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 8599d71ae5a4SJacob Faibussowitsch { 8600b698f381SToby Isaac PetscFunctionBegin; 8601b698f381SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8602b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8603fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2gradientdiff, time, funcs, ctxs, X, n, diff); 86043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8605b698f381SToby Isaac } 8606b698f381SToby Isaac 86072a16baeaSToby Isaac /*@C 86082a16baeaSToby Isaac DMComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components. 86092a16baeaSToby Isaac 861020f4b53cSBarry Smith Collective 8611d083f849SBarry Smith 86122a16baeaSToby Isaac Input Parameters: 8613bb7acecfSBarry Smith + dm - The `DM` 86142a16baeaSToby Isaac . time - The time 86152a16baeaSToby Isaac . funcs - The functions to evaluate for each field component 86162a16baeaSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8617574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 86182a16baeaSToby Isaac 86192a16baeaSToby Isaac Output Parameter: 86202a16baeaSToby Isaac . diff - The array of differences, ||u^f - u^f_h||_2 86212a16baeaSToby Isaac 86222a16baeaSToby Isaac Level: developer 86232a16baeaSToby Isaac 8624bb7acecfSBarry Smith Developer Notes: 8625bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8626bb7acecfSBarry Smith 8627bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8628bb7acecfSBarry Smith 862942747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2GradientDiff()` 86302a16baeaSToby Isaac @*/ 8631d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[]) 8632d71ae5a4SJacob Faibussowitsch { 86332a16baeaSToby Isaac PetscFunctionBegin; 86342a16baeaSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 86352a16baeaSToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8636fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2fielddiff, time, funcs, ctxs, X, diff); 86373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 86382a16baeaSToby Isaac } 86392a16baeaSToby Isaac 8640df0b854cSToby Isaac /*@C 8641bb7acecfSBarry Smith DMGetNeighbors - Gets an array containing the MPI ranks of all the processes neighbors 8642502a2867SDave May 8643502a2867SDave May Not Collective 8644502a2867SDave May 8645502a2867SDave May Input Parameter: 8646bb7acecfSBarry Smith . dm - The `DM` 8647502a2867SDave May 86480a19bb7dSprj- Output Parameters: 86490a19bb7dSprj- + nranks - the number of neighbours 86500a19bb7dSprj- - ranks - the neighbors ranks 8651502a2867SDave May 86529bdbcad8SBarry Smith Level: beginner 86539bdbcad8SBarry Smith 8654bb7acecfSBarry Smith Note: 8655bb7acecfSBarry Smith Do not free the array, it is freed when the `DM` is destroyed. 8656502a2867SDave May 86571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDAGetNeighbors()`, `PetscSFGetRootRanks()` 8658502a2867SDave May @*/ 8659d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNeighbors(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[]) 8660d71ae5a4SJacob Faibussowitsch { 8661502a2867SDave May PetscFunctionBegin; 8662502a2867SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8663fa1e479aSStefano Zampini PetscUseTypeMethod(dm, getneighbors, nranks, ranks); 86643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8665502a2867SDave May } 8666502a2867SDave May 8667531c7667SBarry Smith #include <petsc/private/matimpl.h> /* Needed because of coloring->ctype below */ 8668531c7667SBarry Smith 8669531c7667SBarry Smith /* 8670531c7667SBarry Smith Converts the input vector to a ghosted vector and then calls the standard coloring code. 86712b6f951bSStefano Zampini This must be a different function because it requires DM which is not defined in the Mat library 8672531c7667SBarry Smith */ 867366976f2fSJacob Faibussowitsch static PetscErrorCode MatFDColoringApply_AIJDM(Mat J, MatFDColoring coloring, Vec x1, void *sctx) 8674d71ae5a4SJacob Faibussowitsch { 8675531c7667SBarry Smith PetscFunctionBegin; 8676531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8677531c7667SBarry Smith Vec x1local; 8678531c7667SBarry Smith DM dm; 86799566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 86807a8be351SBarry Smith PetscCheck(dm, PetscObjectComm((PetscObject)J), PETSC_ERR_ARG_INCOMP, "IS_COLORING_LOCAL requires a DM"); 86819566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &x1local)); 86829566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, x1, INSERT_VALUES, x1local)); 86839566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, x1, INSERT_VALUES, x1local)); 8684531c7667SBarry Smith x1 = x1local; 8685531c7667SBarry Smith } 86869566063dSJacob Faibussowitsch PetscCall(MatFDColoringApply_AIJ(J, coloring, x1, sctx)); 8687531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8688531c7667SBarry Smith DM dm; 86899566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 86909566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &x1)); 8691531c7667SBarry Smith } 86923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8693531c7667SBarry Smith } 8694531c7667SBarry Smith 8695531c7667SBarry Smith /*@ 8696bb7acecfSBarry Smith MatFDColoringUseDM - allows a `MatFDColoring` object to use the `DM` associated with the matrix to compute a `IS_COLORING_LOCAL` coloring 8697531c7667SBarry Smith 8698a4e35b19SJacob Faibussowitsch Input Parameters: 8699a4e35b19SJacob Faibussowitsch + coloring - The matrix to get the `DM` from 8700a4e35b19SJacob Faibussowitsch - fdcoloring - the `MatFDColoring` object 8701531c7667SBarry Smith 87029bdbcad8SBarry Smith Level: advanced 87039bdbcad8SBarry Smith 870473ff1848SBarry Smith Developer Note: 870573ff1848SBarry Smith This routine exists because the PETSc `Mat` library does not know about the `DM` objects 8706531c7667SBarry Smith 87071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatFDColoring`, `MatFDColoringCreate()`, `ISColoringType` 8708531c7667SBarry Smith @*/ 8709d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringUseDM(Mat coloring, MatFDColoring fdcoloring) 8710d71ae5a4SJacob Faibussowitsch { 8711531c7667SBarry Smith PetscFunctionBegin; 8712531c7667SBarry Smith coloring->ops->fdcoloringapply = MatFDColoringApply_AIJDM; 87133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8714531c7667SBarry Smith } 87158320bc6fSPatrick Sanan 87168320bc6fSPatrick Sanan /*@ 8717bb7acecfSBarry Smith DMGetCompatibility - determine if two `DM`s are compatible 87188320bc6fSPatrick Sanan 87198320bc6fSPatrick Sanan Collective 87208320bc6fSPatrick Sanan 87218320bc6fSPatrick Sanan Input Parameters: 8722bb7acecfSBarry Smith + dm1 - the first `DM` 8723bb7acecfSBarry Smith - dm2 - the second `DM` 87248320bc6fSPatrick Sanan 87258320bc6fSPatrick Sanan Output Parameters: 8726bb7acecfSBarry Smith + compatible - whether or not the two `DM`s are compatible 8727bb7acecfSBarry Smith - set - whether or not the compatible value was actually determined and set 87288320bc6fSPatrick Sanan 872920f4b53cSBarry Smith Level: advanced 873020f4b53cSBarry Smith 87318320bc6fSPatrick Sanan Notes: 8732bb7acecfSBarry Smith Two `DM`s are deemed compatible if they represent the same parallel decomposition 87333d862458SPatrick Sanan of the same topology. This implies that the section (field data) on one 87348320bc6fSPatrick Sanan "makes sense" with respect to the topology and parallel decomposition of the other. 8735bb7acecfSBarry Smith Loosely speaking, compatible `DM`s represent the same domain and parallel 87363d862458SPatrick Sanan decomposition, but hold different data. 87378320bc6fSPatrick Sanan 87388320bc6fSPatrick Sanan Typically, one would confirm compatibility if intending to simultaneously iterate 8739bb7acecfSBarry Smith over a pair of vectors obtained from different `DM`s. 87408320bc6fSPatrick Sanan 8741bb7acecfSBarry Smith For example, two `DMDA` objects are compatible if they have the same local 87428320bc6fSPatrick Sanan and global sizes and the same stencil width. They can have different numbers 87438320bc6fSPatrick Sanan of degrees of freedom per node. Thus, one could use the node numbering from 8744bb7acecfSBarry Smith either `DM` in bounds for a loop over vectors derived from either `DM`. 87458320bc6fSPatrick Sanan 8746bb7acecfSBarry Smith Consider the operation of summing data living on a 2-dof `DMDA` to data living 8747bb7acecfSBarry Smith on a 1-dof `DMDA`, which should be compatible, as in the following snippet. 87488320bc6fSPatrick Sanan .vb 87498320bc6fSPatrick Sanan ... 87509566063dSJacob Faibussowitsch PetscCall(DMGetCompatibility(da1,da2,&compatible,&set)); 87518320bc6fSPatrick Sanan if (set && compatible) { 87529566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da1,vec1,&arr1)); 87539566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da2,vec2,&arr2)); 87549566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da1,&x,&y,NULL,&m,&n,NULL)); 87558320bc6fSPatrick Sanan for (j=y; j<y+n; ++j) { 87568320bc6fSPatrick Sanan for (i=x; i<x+m, ++i) { 87578320bc6fSPatrick Sanan arr1[j][i][0] = arr2[j][i][0] + arr2[j][i][1]; 87588320bc6fSPatrick Sanan } 87598320bc6fSPatrick Sanan } 87609566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da1,vec1,&arr1)); 87619566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da2,vec2,&arr2)); 87628320bc6fSPatrick Sanan } else { 87638320bc6fSPatrick Sanan SETERRQ(PetscObjectComm((PetscObject)da1,PETSC_ERR_ARG_INCOMP,"DMDA objects incompatible"); 87648320bc6fSPatrick Sanan } 87658320bc6fSPatrick Sanan ... 87668320bc6fSPatrick Sanan .ve 87678320bc6fSPatrick Sanan 8768bb7acecfSBarry Smith Checking compatibility might be expensive for a given implementation of `DM`, 87698320bc6fSPatrick Sanan or might be impossible to unambiguously confirm or deny. For this reason, 87708320bc6fSPatrick Sanan this function may decline to determine compatibility, and hence users should 87718320bc6fSPatrick Sanan always check the "set" output parameter. 87728320bc6fSPatrick Sanan 8773bb7acecfSBarry Smith A `DM` is always compatible with itself. 87748320bc6fSPatrick Sanan 8775bb7acecfSBarry Smith In the current implementation, `DM`s which live on "unequal" communicators 87768320bc6fSPatrick Sanan (MPI_UNEQUAL in the terminology of MPI_Comm_compare()) are always deemed 87778320bc6fSPatrick Sanan incompatible. 87788320bc6fSPatrick Sanan 87798320bc6fSPatrick Sanan This function is labeled "Collective," as information about all subdomains 8780bb7acecfSBarry Smith is required on each rank. However, in `DM` implementations which store all this 87818320bc6fSPatrick Sanan information locally, this function may be merely "Logically Collective". 87828320bc6fSPatrick Sanan 878373ff1848SBarry Smith Developer Note: 8784bb7acecfSBarry Smith Compatibility is assumed to be a symmetric concept; `DM` A is compatible with `DM` B 87853d862458SPatrick Sanan iff B is compatible with A. Thus, this function checks the implementations 8786a5bc1bf3SBarry Smith of both dm and dmc (if they are of different types), attempting to determine 8787bb7acecfSBarry Smith compatibility. It is left to `DM` implementers to ensure that symmetry is 87888320bc6fSPatrick Sanan preserved. The simplest way to do this is, when implementing type-specific 87893d862458SPatrick Sanan logic for this function, is to check for existing logic in the implementation 8790bb7acecfSBarry Smith of other `DM` types and let *set = PETSC_FALSE if found. 87918320bc6fSPatrick Sanan 87921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreateCompatibleDMDA()`, `DMStagCreateCompatibleDMStag()` 87938320bc6fSPatrick Sanan @*/ 8794d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCompatibility(DM dm1, DM dm2, PetscBool *compatible, PetscBool *set) 8795d71ae5a4SJacob Faibussowitsch { 87968320bc6fSPatrick Sanan PetscMPIInt compareResult; 87978320bc6fSPatrick Sanan DMType type, type2; 87988320bc6fSPatrick Sanan PetscBool sameType; 87998320bc6fSPatrick Sanan 88008320bc6fSPatrick Sanan PetscFunctionBegin; 8801a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dm1, DM_CLASSID, 1); 88028320bc6fSPatrick Sanan PetscValidHeaderSpecific(dm2, DM_CLASSID, 2); 88038320bc6fSPatrick Sanan 88048320bc6fSPatrick Sanan /* Declare a DM compatible with itself */ 8805a5bc1bf3SBarry Smith if (dm1 == dm2) { 88068320bc6fSPatrick Sanan *set = PETSC_TRUE; 88078320bc6fSPatrick Sanan *compatible = PETSC_TRUE; 88083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 88098320bc6fSPatrick Sanan } 88108320bc6fSPatrick Sanan 88118320bc6fSPatrick Sanan /* Declare a DM incompatible with a DM that lives on an "unequal" 88128320bc6fSPatrick Sanan communicator. Note that this does not preclude compatibility with 88138320bc6fSPatrick Sanan DMs living on "congruent" or "similar" communicators, but this must be 88148320bc6fSPatrick Sanan determined by the implementation-specific logic */ 88159566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)dm1), PetscObjectComm((PetscObject)dm2), &compareResult)); 88168320bc6fSPatrick Sanan if (compareResult == MPI_UNEQUAL) { 88178320bc6fSPatrick Sanan *set = PETSC_TRUE; 88188320bc6fSPatrick Sanan *compatible = PETSC_FALSE; 88193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 88208320bc6fSPatrick Sanan } 88218320bc6fSPatrick Sanan 88228320bc6fSPatrick Sanan /* Pass to the implementation-specific routine, if one exists. */ 8823a5bc1bf3SBarry Smith if (dm1->ops->getcompatibility) { 8824dbbe0bcdSBarry Smith PetscUseTypeMethod(dm1, getcompatibility, dm2, compatible, set); 88253ba16761SJacob Faibussowitsch if (*set) PetscFunctionReturn(PETSC_SUCCESS); 88268320bc6fSPatrick Sanan } 88278320bc6fSPatrick Sanan 8828a5bc1bf3SBarry Smith /* If dm1 and dm2 are of different types, then attempt to check compatibility 88298320bc6fSPatrick Sanan with an implementation of this function from dm2 */ 88309566063dSJacob Faibussowitsch PetscCall(DMGetType(dm1, &type)); 88319566063dSJacob Faibussowitsch PetscCall(DMGetType(dm2, &type2)); 88329566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(type, type2, &sameType)); 88338320bc6fSPatrick Sanan if (!sameType && dm2->ops->getcompatibility) { 8834dbbe0bcdSBarry Smith PetscUseTypeMethod(dm2, getcompatibility, dm1, compatible, set); /* Note argument order */ 88358320bc6fSPatrick Sanan } else { 88368320bc6fSPatrick Sanan *set = PETSC_FALSE; 88378320bc6fSPatrick Sanan } 88383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 88398320bc6fSPatrick Sanan } 8840c0f0dcc3SMatthew G. Knepley 8841c0f0dcc3SMatthew G. Knepley /*@C 8842bb7acecfSBarry Smith DMMonitorSet - Sets an additional monitor function that is to be used after a solve to monitor discretization performance. 8843c0f0dcc3SMatthew G. Knepley 884420f4b53cSBarry Smith Logically Collective 8845c0f0dcc3SMatthew G. Knepley 8846c0f0dcc3SMatthew G. Knepley Input Parameters: 884760225df5SJacob Faibussowitsch + dm - the `DM` 8848c0f0dcc3SMatthew G. Knepley . f - the monitor function 884920f4b53cSBarry Smith . mctx - [optional] user-defined context for private data for the monitor routine (use `NULL` if no context is desired) 885049abdd8aSBarry Smith - monitordestroy - [optional] routine that frees monitor context (may be `NULL`), see `PetscCtxDestroyFn` for the calling sequence 8851c0f0dcc3SMatthew G. Knepley 885220f4b53cSBarry Smith Options Database Key: 885360225df5SJacob Faibussowitsch . -dm_monitor_cancel - cancels all monitors that have been hardwired into a code by calls to `DMMonitorSet()`, but 8854c0f0dcc3SMatthew G. Knepley does not cancel those set via the options database. 8855c0f0dcc3SMatthew G. Knepley 88569bdbcad8SBarry Smith Level: intermediate 88579bdbcad8SBarry Smith 8858bb7acecfSBarry Smith Note: 8859c0f0dcc3SMatthew G. Knepley Several different monitoring routines may be set by calling 8860bb7acecfSBarry Smith `DMMonitorSet()` multiple times or with `DMMonitorSetFromOptions()`; all will be called in the 8861c0f0dcc3SMatthew G. Knepley order in which they were set. 8862c0f0dcc3SMatthew G. Knepley 886373ff1848SBarry Smith Fortran Note: 8864bb7acecfSBarry Smith Only a single monitor function can be set for each `DM` object 8865bb7acecfSBarry Smith 886673ff1848SBarry Smith Developer Note: 8867bb7acecfSBarry Smith This API has a generic name but seems specific to a very particular aspect of the use of `DM` 8868c0f0dcc3SMatthew G. Knepley 886949abdd8aSBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorCancel()`, `DMMonitorSetFromOptions()`, `DMMonitor()`, `PetscCtxDestroyFn` 8870c0f0dcc3SMatthew G. Knepley @*/ 887149abdd8aSBarry Smith PetscErrorCode DMMonitorSet(DM dm, PetscErrorCode (*f)(DM, void *), void *mctx, PetscCtxDestroyFn *monitordestroy) 8872d71ae5a4SJacob Faibussowitsch { 8873c0f0dcc3SMatthew G. Knepley PetscInt m; 8874c0f0dcc3SMatthew G. Knepley 8875c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8876c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8877c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 8878c0f0dcc3SMatthew G. Knepley PetscBool identical; 8879c0f0dcc3SMatthew G. Knepley 88809566063dSJacob Faibussowitsch PetscCall(PetscMonitorCompare((PetscErrorCode (*)(void))f, mctx, monitordestroy, (PetscErrorCode (*)(void))dm->monitor[m], dm->monitorcontext[m], dm->monitordestroy[m], &identical)); 88813ba16761SJacob Faibussowitsch if (identical) PetscFunctionReturn(PETSC_SUCCESS); 8882c0f0dcc3SMatthew G. Knepley } 88837a8be351SBarry Smith PetscCheck(dm->numbermonitors < MAXDMMONITORS, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many monitors set"); 8884c0f0dcc3SMatthew G. Knepley dm->monitor[dm->numbermonitors] = f; 8885c0f0dcc3SMatthew G. Knepley dm->monitordestroy[dm->numbermonitors] = monitordestroy; 8886835f2295SStefano Zampini dm->monitorcontext[dm->numbermonitors++] = mctx; 88873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8888c0f0dcc3SMatthew G. Knepley } 8889c0f0dcc3SMatthew G. Knepley 8890c0f0dcc3SMatthew G. Knepley /*@ 8891bb7acecfSBarry Smith DMMonitorCancel - Clears all the monitor functions for a `DM` object. 8892c0f0dcc3SMatthew G. Knepley 889320f4b53cSBarry Smith Logically Collective 8894c0f0dcc3SMatthew G. Knepley 8895c0f0dcc3SMatthew G. Knepley Input Parameter: 8896c0f0dcc3SMatthew G. Knepley . dm - the DM 8897c0f0dcc3SMatthew G. Knepley 8898c0f0dcc3SMatthew G. Knepley Options Database Key: 8899c0f0dcc3SMatthew G. Knepley . -dm_monitor_cancel - cancels all monitors that have been hardwired 8900bb7acecfSBarry Smith into a code by calls to `DMonitorSet()`, but does not cancel those 8901c0f0dcc3SMatthew G. Knepley set via the options database 8902c0f0dcc3SMatthew G. Knepley 89039bdbcad8SBarry Smith Level: intermediate 89049bdbcad8SBarry Smith 8905bb7acecfSBarry Smith Note: 8906bb7acecfSBarry Smith There is no way to clear one specific monitor from a `DM` object. 8907c0f0dcc3SMatthew G. Knepley 89081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`, `DMMonitor()` 8909c0f0dcc3SMatthew G. Knepley @*/ 8910d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorCancel(DM dm) 8911d71ae5a4SJacob Faibussowitsch { 8912c0f0dcc3SMatthew G. Knepley PetscInt m; 8913c0f0dcc3SMatthew G. Knepley 8914c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8915c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8916c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 89179566063dSJacob Faibussowitsch if (dm->monitordestroy[m]) PetscCall((*dm->monitordestroy[m])(&dm->monitorcontext[m])); 8918c0f0dcc3SMatthew G. Knepley } 8919c0f0dcc3SMatthew G. Knepley dm->numbermonitors = 0; 89203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8921c0f0dcc3SMatthew G. Knepley } 8922c0f0dcc3SMatthew G. Knepley 8923c0f0dcc3SMatthew G. Knepley /*@C 8924c0f0dcc3SMatthew G. Knepley DMMonitorSetFromOptions - Sets a monitor function and viewer appropriate for the type indicated by the user 8925c0f0dcc3SMatthew G. Knepley 892620f4b53cSBarry Smith Collective 8927c0f0dcc3SMatthew G. Knepley 8928c0f0dcc3SMatthew G. Knepley Input Parameters: 8929bb7acecfSBarry Smith + dm - `DM` object you wish to monitor 8930c0f0dcc3SMatthew G. Knepley . name - the monitor type one is seeking 8931c0f0dcc3SMatthew G. Knepley . help - message indicating what monitoring is done 8932c0f0dcc3SMatthew G. Knepley . manual - manual page for the monitor 893349abdd8aSBarry Smith . monitor - the monitor function, this must use a `PetscViewerFormat` as its context 8934bb7acecfSBarry Smith - monitorsetup - a function that is called once ONLY if the user selected this monitor that may set additional features of the `DM` or `PetscViewer` objects 8935c0f0dcc3SMatthew G. Knepley 8936c0f0dcc3SMatthew G. Knepley Output Parameter: 8937c0f0dcc3SMatthew G. Knepley . flg - Flag set if the monitor was created 8938c0f0dcc3SMatthew G. Knepley 8939c0f0dcc3SMatthew G. Knepley Level: developer 8940c0f0dcc3SMatthew G. Knepley 8941648c30bcSBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscOptionsCreateViewer()`, `PetscOptionsGetReal()`, `PetscOptionsHasName()`, `PetscOptionsGetString()`, 8942db781477SPatrick Sanan `PetscOptionsGetIntArray()`, `PetscOptionsGetRealArray()`, `PetscOptionsBool()` 894360225df5SJacob Faibussowitsch `PetscOptionsInt()`, `PetscOptionsString()`, `PetscOptionsReal()`, 8944db781477SPatrick Sanan `PetscOptionsName()`, `PetscOptionsBegin()`, `PetscOptionsEnd()`, `PetscOptionsHeadBegin()`, 8945c2e3fba1SPatrick Sanan `PetscOptionsStringArray()`, `PetscOptionsRealArray()`, `PetscOptionsScalar()`, 8946db781477SPatrick Sanan `PetscOptionsBoolGroupBegin()`, `PetscOptionsBoolGroup()`, `PetscOptionsBoolGroupEnd()`, 8947bb7acecfSBarry Smith `PetscOptionsFList()`, `PetscOptionsEList()`, `DMMonitor()`, `DMMonitorSet()` 8948c0f0dcc3SMatthew G. Knepley @*/ 8949d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSetFromOptions(DM dm, const char name[], const char help[], const char manual[], PetscErrorCode (*monitor)(DM, void *), PetscErrorCode (*monitorsetup)(DM, PetscViewerAndFormat *), PetscBool *flg) 8950d71ae5a4SJacob Faibussowitsch { 8951c0f0dcc3SMatthew G. Knepley PetscViewer viewer; 8952c0f0dcc3SMatthew G. Knepley PetscViewerFormat format; 8953c0f0dcc3SMatthew G. Knepley 8954c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8955c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8956648c30bcSBarry Smith PetscCall(PetscOptionsCreateViewer(PetscObjectComm((PetscObject)dm), ((PetscObject)dm)->options, ((PetscObject)dm)->prefix, name, &viewer, &format, flg)); 8957c0f0dcc3SMatthew G. Knepley if (*flg) { 8958c0f0dcc3SMatthew G. Knepley PetscViewerAndFormat *vf; 8959c0f0dcc3SMatthew G. Knepley 89609566063dSJacob Faibussowitsch PetscCall(PetscViewerAndFormatCreate(viewer, format, &vf)); 8961648c30bcSBarry Smith PetscCall(PetscViewerDestroy(&viewer)); 89629566063dSJacob Faibussowitsch if (monitorsetup) PetscCall((*monitorsetup)(dm, vf)); 8963835f2295SStefano Zampini PetscCall(DMMonitorSet(dm, monitor, vf, (PetscCtxDestroyFn *)PetscViewerAndFormatDestroy)); 8964c0f0dcc3SMatthew G. Knepley } 89653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8966c0f0dcc3SMatthew G. Knepley } 8967c0f0dcc3SMatthew G. Knepley 8968c0f0dcc3SMatthew G. Knepley /*@ 8969c0f0dcc3SMatthew G. Knepley DMMonitor - runs the user provided monitor routines, if they exist 8970c0f0dcc3SMatthew G. Knepley 897120f4b53cSBarry Smith Collective 8972c0f0dcc3SMatthew G. Knepley 89732fe279fdSBarry Smith Input Parameter: 8974bb7acecfSBarry Smith . dm - The `DM` 8975c0f0dcc3SMatthew G. Knepley 8976c0f0dcc3SMatthew G. Knepley Level: developer 8977c0f0dcc3SMatthew G. Knepley 897873ff1848SBarry Smith Developer Note: 8979a4e35b19SJacob Faibussowitsch Note should indicate when during the life of the `DM` the monitor is run. It appears to be 8980a4e35b19SJacob Faibussowitsch related to the discretization process seems rather specialized since some `DM` have no 8981a4e35b19SJacob Faibussowitsch concept of discretization. 8982bb7acecfSBarry Smith 89831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()` 8984c0f0dcc3SMatthew G. Knepley @*/ 8985d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitor(DM dm) 8986d71ae5a4SJacob Faibussowitsch { 8987c0f0dcc3SMatthew G. Knepley PetscInt m; 8988c0f0dcc3SMatthew G. Knepley 8989c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 89903ba16761SJacob Faibussowitsch if (!dm) PetscFunctionReturn(PETSC_SUCCESS); 8991c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 899248a46eb9SPierre Jolivet for (m = 0; m < dm->numbermonitors; ++m) PetscCall((*dm->monitor[m])(dm, dm->monitorcontext[m])); 89933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8994c0f0dcc3SMatthew G. Knepley } 89952e4af2aeSMatthew G. Knepley 89962e4af2aeSMatthew G. Knepley /*@ 8997bb7acecfSBarry Smith DMComputeError - Computes the error assuming the user has provided the exact solution functions 89982e4af2aeSMatthew G. Knepley 899920f4b53cSBarry Smith Collective 90002e4af2aeSMatthew G. Knepley 90012e4af2aeSMatthew G. Knepley Input Parameters: 9002bb7acecfSBarry Smith + dm - The `DM` 90036b867d5aSJose E. Roman - sol - The solution vector 90042e4af2aeSMatthew G. Knepley 90056b867d5aSJose E. Roman Input/Output Parameter: 900620f4b53cSBarry Smith . errors - An array of length Nf, the number of fields, or `NULL` for no output; on output 90076b867d5aSJose E. Roman contains the error in each field 90086b867d5aSJose E. Roman 90096b867d5aSJose E. Roman Output Parameter: 901020f4b53cSBarry Smith . errorVec - A vector to hold the cellwise error (may be `NULL`) 901120f4b53cSBarry Smith 901220f4b53cSBarry Smith Level: developer 90132e4af2aeSMatthew G. Knepley 9014bb7acecfSBarry Smith Note: 9015bb7acecfSBarry Smith The exact solutions come from the `PetscDS` object, and the time comes from `DMGetOutputSequenceNumber()`. 90162e4af2aeSMatthew G. Knepley 90171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMGetRegionNumDS()`, `PetscDSGetExactSolution()`, `DMGetOutputSequenceNumber()` 90182e4af2aeSMatthew G. Knepley @*/ 9019d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeError(DM dm, Vec sol, PetscReal errors[], Vec *errorVec) 9020d71ae5a4SJacob Faibussowitsch { 90212e4af2aeSMatthew G. Knepley PetscErrorCode (**exactSol)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *); 90222e4af2aeSMatthew G. Knepley void **ctxs; 90232e4af2aeSMatthew G. Knepley PetscReal time; 90242e4af2aeSMatthew G. Knepley PetscInt Nf, f, Nds, s; 90252e4af2aeSMatthew G. Knepley 90262e4af2aeSMatthew G. Knepley PetscFunctionBegin; 90279566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 90289566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &exactSol, Nf, &ctxs)); 90299566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 90302e4af2aeSMatthew G. Knepley for (s = 0; s < Nds; ++s) { 90312e4af2aeSMatthew G. Knepley PetscDS ds; 90322e4af2aeSMatthew G. Knepley DMLabel label; 90332e4af2aeSMatthew G. Knepley IS fieldIS; 90342e4af2aeSMatthew G. Knepley const PetscInt *fields; 90352e4af2aeSMatthew G. Knepley PetscInt dsNf; 90362e4af2aeSMatthew G. Knepley 903707218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 90389566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 90399566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISGetIndices(fieldIS, &fields)); 90402e4af2aeSMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 90412e4af2aeSMatthew G. Knepley const PetscInt field = fields[f]; 90429566063dSJacob Faibussowitsch PetscCall(PetscDSGetExactSolution(ds, field, &exactSol[field], &ctxs[field])); 90432e4af2aeSMatthew G. Knepley } 90449566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISRestoreIndices(fieldIS, &fields)); 90452e4af2aeSMatthew G. Knepley } 9046ad540459SPierre Jolivet for (f = 0; f < Nf; ++f) PetscCheck(exactSol[f], PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "DS must contain exact solution functions in order to calculate error, missing for field %" PetscInt_FMT, f); 90479566063dSJacob Faibussowitsch PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time)); 90489566063dSJacob Faibussowitsch if (errors) PetscCall(DMComputeL2FieldDiff(dm, time, exactSol, ctxs, sol, errors)); 90492e4af2aeSMatthew G. Knepley if (errorVec) { 90502e4af2aeSMatthew G. Knepley DM edm; 90512e4af2aeSMatthew G. Knepley DMPolytopeType ct; 90522e4af2aeSMatthew G. Knepley PetscBool simplex; 90532e4af2aeSMatthew G. Knepley PetscInt dim, cStart, Nf; 90542e4af2aeSMatthew G. Knepley 90559566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &edm)); 90569566063dSJacob Faibussowitsch PetscCall(DMGetDimension(edm, &dim)); 90579566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 90589566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 90592e4af2aeSMatthew G. Knepley simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE; 90609566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 90612e4af2aeSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 90622e4af2aeSMatthew G. Knepley PetscFE fe, efe; 90632e4af2aeSMatthew G. Knepley PetscQuadrature q; 90642e4af2aeSMatthew G. Knepley const char *name; 90652e4af2aeSMatthew G. Knepley 90669566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe)); 90679566063dSJacob Faibussowitsch PetscCall(PetscFECreateLagrange(PETSC_COMM_SELF, dim, Nf, simplex, 0, PETSC_DETERMINE, &efe)); 90689566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)fe, &name)); 90699566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)efe, name)); 90709566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 90719566063dSJacob Faibussowitsch PetscCall(PetscFESetQuadrature(efe, q)); 90729566063dSJacob Faibussowitsch PetscCall(DMSetField(edm, f, NULL, (PetscObject)efe)); 90739566063dSJacob Faibussowitsch PetscCall(PetscFEDestroy(&efe)); 90742e4af2aeSMatthew G. Knepley } 90759566063dSJacob Faibussowitsch PetscCall(DMCreateDS(edm)); 90762e4af2aeSMatthew G. Knepley 90779566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(edm, errorVec)); 90789566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*errorVec, "Error")); 90799566063dSJacob Faibussowitsch PetscCall(DMPlexComputeL2DiffVec(dm, time, exactSol, ctxs, sol, *errorVec)); 90809566063dSJacob Faibussowitsch PetscCall(DMDestroy(&edm)); 90812e4af2aeSMatthew G. Knepley } 90829566063dSJacob Faibussowitsch PetscCall(PetscFree2(exactSol, ctxs)); 90833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 90842e4af2aeSMatthew G. Knepley } 90859a2a23afSMatthew G. Knepley 90869a2a23afSMatthew G. Knepley /*@ 9087bb7acecfSBarry Smith DMGetNumAuxiliaryVec - Get the number of auxiliary vectors associated with this `DM` 90889a2a23afSMatthew G. Knepley 908920f4b53cSBarry Smith Not Collective 90909a2a23afSMatthew G. Knepley 90919a2a23afSMatthew G. Knepley Input Parameter: 9092bb7acecfSBarry Smith . dm - The `DM` 90939a2a23afSMatthew G. Knepley 90949a2a23afSMatthew G. Knepley Output Parameter: 9095a5b23f4aSJose E. Roman . numAux - The number of auxiliary data vectors 90969a2a23afSMatthew G. Knepley 90979a2a23afSMatthew G. Knepley Level: advanced 90989a2a23afSMatthew G. Knepley 9099e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMGetAuxiliaryVec()` 91009a2a23afSMatthew G. Knepley @*/ 9101d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumAuxiliaryVec(DM dm, PetscInt *numAux) 9102d71ae5a4SJacob Faibussowitsch { 91039a2a23afSMatthew G. Knepley PetscFunctionBegin; 91049a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 91059566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetSize(dm->auxData, numAux)); 91063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91079a2a23afSMatthew G. Knepley } 91089a2a23afSMatthew G. Knepley 91099a2a23afSMatthew G. Knepley /*@ 9110ac17215fSMatthew G. Knepley DMGetAuxiliaryVec - Get the auxiliary vector for region specified by the given label and value, and equation part 91119a2a23afSMatthew G. Knepley 911220f4b53cSBarry Smith Not Collective 91139a2a23afSMatthew G. Knepley 91149a2a23afSMatthew G. Knepley Input Parameters: 9115bb7acecfSBarry Smith + dm - The `DM` 9116bb7acecfSBarry Smith . label - The `DMLabel` 9117ac17215fSMatthew G. Knepley . value - The label value indicating the region 9118ac17215fSMatthew G. Knepley - part - The equation part, or 0 if unused 91199a2a23afSMatthew G. Knepley 91209a2a23afSMatthew G. Knepley Output Parameter: 9121bb7acecfSBarry Smith . aux - The `Vec` holding auxiliary field data 91229a2a23afSMatthew G. Knepley 91239bdbcad8SBarry Smith Level: advanced 91249bdbcad8SBarry Smith 9125bb7acecfSBarry Smith Note: 9126bb7acecfSBarry Smith If no auxiliary vector is found for this (label, value), (NULL, 0, 0) is checked as well. 912704c51a94SMatthew G. Knepley 9128e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryLabels()` 91299a2a23afSMatthew G. Knepley @*/ 9130d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec *aux) 9131d71ae5a4SJacob Faibussowitsch { 9132ac17215fSMatthew G. Knepley PetscHashAuxKey key, wild = {NULL, 0, 0}; 913304c51a94SMatthew G. Knepley PetscBool has; 91349a2a23afSMatthew G. Knepley 91359a2a23afSMatthew G. Knepley PetscFunctionBegin; 91369a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 91379a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 91389a2a23afSMatthew G. Knepley key.label = label; 91399a2a23afSMatthew G. Knepley key.value = value; 9140ac17215fSMatthew G. Knepley key.part = part; 91419566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxHas(dm->auxData, key, &has)); 91429566063dSJacob Faibussowitsch if (has) PetscCall(PetscHMapAuxGet(dm->auxData, key, aux)); 91439566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxGet(dm->auxData, wild, aux)); 91443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91459a2a23afSMatthew G. Knepley } 91469a2a23afSMatthew G. Knepley 91479a2a23afSMatthew G. Knepley /*@ 9148bb7acecfSBarry Smith DMSetAuxiliaryVec - Set an auxiliary vector for region specified by the given label and value, and equation part 91499a2a23afSMatthew G. Knepley 915020f4b53cSBarry Smith Not Collective because auxiliary vectors are not parallel 91519a2a23afSMatthew G. Knepley 91529a2a23afSMatthew G. Knepley Input Parameters: 9153bb7acecfSBarry Smith + dm - The `DM` 9154bb7acecfSBarry Smith . label - The `DMLabel` 91559a2a23afSMatthew G. Knepley . value - The label value indicating the region 9156ac17215fSMatthew G. Knepley . part - The equation part, or 0 if unused 9157bb7acecfSBarry Smith - aux - The `Vec` holding auxiliary field data 91589a2a23afSMatthew G. Knepley 91599a2a23afSMatthew G. Knepley Level: advanced 91609a2a23afSMatthew G. Knepley 9161e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMCopyAuxiliaryVec()` 91629a2a23afSMatthew G. Knepley @*/ 9163d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec aux) 9164d71ae5a4SJacob Faibussowitsch { 91659a2a23afSMatthew G. Knepley Vec old; 91669a2a23afSMatthew G. Knepley PetscHashAuxKey key; 91679a2a23afSMatthew G. Knepley 91689a2a23afSMatthew G. Knepley PetscFunctionBegin; 91699a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 91709a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 91719a2a23afSMatthew G. Knepley key.label = label; 91729a2a23afSMatthew G. Knepley key.value = value; 9173ac17215fSMatthew G. Knepley key.part = part; 91749566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGet(dm->auxData, key, &old)); 91759566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)aux)); 91769566063dSJacob Faibussowitsch if (!aux) PetscCall(PetscHMapAuxDel(dm->auxData, key)); 91779566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxSet(dm->auxData, key, aux)); 9178d705d0eaSStefano Zampini PetscCall(VecDestroy(&old)); 91793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91809a2a23afSMatthew G. Knepley } 91819a2a23afSMatthew G. Knepley 9182cc4c1da9SBarry Smith /*@ 9183bb7acecfSBarry Smith DMGetAuxiliaryLabels - Get the labels, values, and parts for all auxiliary vectors in this `DM` 91849a2a23afSMatthew G. Knepley 918520f4b53cSBarry Smith Not Collective 91869a2a23afSMatthew G. Knepley 91879a2a23afSMatthew G. Knepley Input Parameter: 9188bb7acecfSBarry Smith . dm - The `DM` 91899a2a23afSMatthew G. Knepley 91909a2a23afSMatthew G. Knepley Output Parameters: 9191bb7acecfSBarry Smith + labels - The `DMLabel`s for each `Vec` 9192bb7acecfSBarry Smith . values - The label values for each `Vec` 9193bb7acecfSBarry Smith - parts - The equation parts for each `Vec` 91949a2a23afSMatthew G. Knepley 91959bdbcad8SBarry Smith Level: advanced 91969bdbcad8SBarry Smith 9197bb7acecfSBarry Smith Note: 9198bb7acecfSBarry Smith The arrays passed in must be at least as large as `DMGetNumAuxiliaryVec()`. 91999a2a23afSMatthew G. Knepley 9200e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMCopyAuxiliaryVec()` 92019a2a23afSMatthew G. Knepley @*/ 9202d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryLabels(DM dm, DMLabel labels[], PetscInt values[], PetscInt parts[]) 9203d71ae5a4SJacob Faibussowitsch { 92049a2a23afSMatthew G. Knepley PetscHashAuxKey *keys; 92059a2a23afSMatthew G. Knepley PetscInt n, i, off = 0; 92069a2a23afSMatthew G. Knepley 92079a2a23afSMatthew G. Knepley PetscFunctionBegin; 92089a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 92094f572ea9SToby Isaac PetscAssertPointer(labels, 2); 92104f572ea9SToby Isaac PetscAssertPointer(values, 3); 92114f572ea9SToby Isaac PetscAssertPointer(parts, 4); 92129566063dSJacob Faibussowitsch PetscCall(DMGetNumAuxiliaryVec(dm, &n)); 92139566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &keys)); 92149566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetKeys(dm->auxData, &off, keys)); 92159371c9d4SSatish Balay for (i = 0; i < n; ++i) { 92169371c9d4SSatish Balay labels[i] = keys[i].label; 92179371c9d4SSatish Balay values[i] = keys[i].value; 92189371c9d4SSatish Balay parts[i] = keys[i].part; 92199371c9d4SSatish Balay } 92209566063dSJacob Faibussowitsch PetscCall(PetscFree(keys)); 92213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92229a2a23afSMatthew G. Knepley } 92239a2a23afSMatthew G. Knepley 92249a2a23afSMatthew G. Knepley /*@ 9225bb7acecfSBarry Smith DMCopyAuxiliaryVec - Copy the auxiliary vector data on a `DM` to a new `DM` 92269a2a23afSMatthew G. Knepley 922720f4b53cSBarry Smith Not Collective 92289a2a23afSMatthew G. Knepley 92299a2a23afSMatthew G. Knepley Input Parameter: 9230bb7acecfSBarry Smith . dm - The `DM` 92319a2a23afSMatthew G. Knepley 92329a2a23afSMatthew G. Knepley Output Parameter: 9233bb7acecfSBarry Smith . dmNew - The new `DM`, now with the same auxiliary data 92349a2a23afSMatthew G. Knepley 92359a2a23afSMatthew G. Knepley Level: advanced 92369a2a23afSMatthew G. Knepley 9237bb7acecfSBarry Smith Note: 9238bb7acecfSBarry Smith This is a shallow copy of the auxiliary vectors 9239bb7acecfSBarry Smith 9240e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 92419a2a23afSMatthew G. Knepley @*/ 9242d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyAuxiliaryVec(DM dm, DM dmNew) 9243d71ae5a4SJacob Faibussowitsch { 92449a2a23afSMatthew G. Knepley PetscFunctionBegin; 92459a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9246d705d0eaSStefano Zampini PetscValidHeaderSpecific(dmNew, DM_CLASSID, 2); 9247d705d0eaSStefano Zampini if (dm == dmNew) PetscFunctionReturn(PETSC_SUCCESS); 9248e4d5475eSStefano Zampini PetscCall(DMClearAuxiliaryVec(dmNew)); 9249e4d5475eSStefano Zampini 9250e4d5475eSStefano Zampini PetscCall(PetscHMapAuxDestroy(&dmNew->auxData)); 92519566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDuplicate(dm->auxData, &dmNew->auxData)); 9252d705d0eaSStefano Zampini { 9253d705d0eaSStefano Zampini Vec *auxData; 9254d705d0eaSStefano Zampini PetscInt n, i, off = 0; 9255d705d0eaSStefano Zampini 9256d705d0eaSStefano Zampini PetscCall(PetscHMapAuxGetSize(dmNew->auxData, &n)); 9257d705d0eaSStefano Zampini PetscCall(PetscMalloc1(n, &auxData)); 9258d705d0eaSStefano Zampini PetscCall(PetscHMapAuxGetVals(dmNew->auxData, &off, auxData)); 9259d705d0eaSStefano Zampini for (i = 0; i < n; ++i) PetscCall(PetscObjectReference((PetscObject)auxData[i])); 9260d705d0eaSStefano Zampini PetscCall(PetscFree(auxData)); 9261e4d5475eSStefano Zampini } 9262e4d5475eSStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 9263e4d5475eSStefano Zampini } 9264e4d5475eSStefano Zampini 9265e4d5475eSStefano Zampini /*@ 9266e4d5475eSStefano Zampini DMClearAuxiliaryVec - Destroys the auxiliary vector information and creates a new empty one 9267e4d5475eSStefano Zampini 9268e4d5475eSStefano Zampini Not Collective 9269e4d5475eSStefano Zampini 9270e4d5475eSStefano Zampini Input Parameter: 9271e4d5475eSStefano Zampini . dm - The `DM` 9272e4d5475eSStefano Zampini 9273e4d5475eSStefano Zampini Level: advanced 9274e4d5475eSStefano Zampini 9275e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMCopyAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 9276e4d5475eSStefano Zampini @*/ 9277e4d5475eSStefano Zampini PetscErrorCode DMClearAuxiliaryVec(DM dm) 9278e4d5475eSStefano Zampini { 9279e4d5475eSStefano Zampini Vec *auxData; 9280e4d5475eSStefano Zampini PetscInt n, i, off = 0; 9281e4d5475eSStefano Zampini 9282e4d5475eSStefano Zampini PetscFunctionBegin; 9283e4d5475eSStefano Zampini PetscCall(PetscHMapAuxGetSize(dm->auxData, &n)); 9284d705d0eaSStefano Zampini PetscCall(PetscMalloc1(n, &auxData)); 9285e4d5475eSStefano Zampini PetscCall(PetscHMapAuxGetVals(dm->auxData, &off, auxData)); 9286d705d0eaSStefano Zampini for (i = 0; i < n; ++i) PetscCall(VecDestroy(&auxData[i])); 9287d705d0eaSStefano Zampini PetscCall(PetscFree(auxData)); 9288e4d5475eSStefano Zampini PetscCall(PetscHMapAuxDestroy(&dm->auxData)); 9289e4d5475eSStefano Zampini PetscCall(PetscHMapAuxCreate(&dm->auxData)); 92903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92919a2a23afSMatthew G. Knepley } 9292b5a892a1SMatthew G. Knepley 9293cc4c1da9SBarry Smith /*@ 9294bb7acecfSBarry Smith DMPolytopeMatchOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9295b5a892a1SMatthew G. Knepley 929620f4b53cSBarry Smith Not Collective 9297b5a892a1SMatthew G. Knepley 9298b5a892a1SMatthew G. Knepley Input Parameters: 9299bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9300b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9301b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9302b5a892a1SMatthew G. Knepley 9303b5a892a1SMatthew G. Knepley Output Parameters: 9304bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9305b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9306b5a892a1SMatthew G. Knepley 9307b5a892a1SMatthew G. Knepley Level: advanced 9308b5a892a1SMatthew G. Knepley 9309bb7acecfSBarry Smith Note: 9310bb7acecfSBarry Smith An arrangement is a face order combined with an orientation for each face 9311bb7acecfSBarry Smith 931285036b15SMatthew G. Knepley Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2 9313bb7acecfSBarry Smith that labels each arrangement (face ordering plus orientation for each face). 9314bb7acecfSBarry Smith 9315bb7acecfSBarry Smith See `DMPolytopeMatchVertexOrientation()` to find a new vertex orientation that takes the source vertex arrangement to the target vertex arrangement 9316bb7acecfSBarry Smith 93171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetVertexOrientation()` 9318b5a892a1SMatthew G. Knepley @*/ 9319d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt, PetscBool *found) 9320d71ae5a4SJacob Faibussowitsch { 9321b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetConeSize(ct); 932285036b15SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2; 9323b5a892a1SMatthew G. Knepley PetscInt o, c; 9324b5a892a1SMatthew G. Knepley 9325b5a892a1SMatthew G. Knepley PetscFunctionBegin; 93269371c9d4SSatish Balay if (!nO) { 93279371c9d4SSatish Balay *ornt = 0; 93289371c9d4SSatish Balay *found = PETSC_TRUE; 93293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 93309371c9d4SSatish Balay } 9331b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 933285036b15SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangement(ct, o); 9333b5a892a1SMatthew G. Knepley 93349371c9d4SSatish Balay for (c = 0; c < cS; ++c) 93359371c9d4SSatish Balay if (sourceCone[arr[c * 2]] != targetCone[c]) break; 93369371c9d4SSatish Balay if (c == cS) { 93379371c9d4SSatish Balay *ornt = o; 93389371c9d4SSatish Balay break; 93399371c9d4SSatish Balay } 9340b5a892a1SMatthew G. Knepley } 9341b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 93423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9343b5a892a1SMatthew G. Knepley } 9344b5a892a1SMatthew G. Knepley 9345cc4c1da9SBarry Smith /*@ 9346bb7acecfSBarry Smith DMPolytopeGetOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9347b5a892a1SMatthew G. Knepley 934820f4b53cSBarry Smith Not Collective 9349b5a892a1SMatthew G. Knepley 9350b5a892a1SMatthew G. Knepley Input Parameters: 9351bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9352b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9353b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9354b5a892a1SMatthew G. Knepley 93552fe279fdSBarry Smith Output Parameter: 9356bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9357b5a892a1SMatthew G. Knepley 9358b5a892a1SMatthew G. Knepley Level: advanced 9359b5a892a1SMatthew G. Knepley 9360bb7acecfSBarry Smith Note: 9361bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchOrientation()` except it will generate an error if no suitable orientation can be found. 9362bb7acecfSBarry Smith 936373ff1848SBarry Smith Developer Note: 9364bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchOrientation()` and error if none is found 9365bb7acecfSBarry Smith 93661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchOrientation()`, `DMPolytopeGetVertexOrientation()`, `DMPolytopeMatchVertexOrientation()` 9367b5a892a1SMatthew G. Knepley @*/ 9368d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9369d71ae5a4SJacob Faibussowitsch { 9370b5a892a1SMatthew G. Knepley PetscBool found; 9371b5a892a1SMatthew G. Knepley 9372b5a892a1SMatthew G. Knepley PetscFunctionBegin; 93739566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchOrientation(ct, sourceCone, targetCone, ornt, &found)); 93747a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 93753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9376b5a892a1SMatthew G. Knepley } 9377b5a892a1SMatthew G. Knepley 9378cc4c1da9SBarry Smith /*@ 9379bb7acecfSBarry Smith DMPolytopeMatchVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9380b5a892a1SMatthew G. Knepley 938120f4b53cSBarry Smith Not Collective 9382b5a892a1SMatthew G. Knepley 9383b5a892a1SMatthew G. Knepley Input Parameters: 9384bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9385b5a892a1SMatthew G. Knepley . sourceVert - The source arrangement of vertices 9386b5a892a1SMatthew G. Knepley - targetVert - The target arrangement of vertices 9387b5a892a1SMatthew G. Knepley 9388b5a892a1SMatthew G. Knepley Output Parameters: 9389bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9390b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9391b5a892a1SMatthew G. Knepley 9392b5a892a1SMatthew G. Knepley Level: advanced 9393b5a892a1SMatthew G. Knepley 939473ff1848SBarry Smith Notes: 9395bb7acecfSBarry Smith An arrangement is a vertex order 9396bb7acecfSBarry Smith 939785036b15SMatthew G. Knepley Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2 9398bb7acecfSBarry Smith that labels each arrangement (vertex ordering). 9399bb7acecfSBarry Smith 9400bb7acecfSBarry Smith See `DMPolytopeMatchOrientation()` to find a new face orientation that takes the source face arrangement to the target face arrangement 9401bb7acecfSBarry Smith 940285036b15SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchOrientation()`, `DMPolytopeTypeGetNumVertices()`, `DMPolytopeTypeGetVertexArrangement()` 9403b5a892a1SMatthew G. Knepley @*/ 9404d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchVertexOrientation(DMPolytopeType ct, const PetscInt sourceVert[], const PetscInt targetVert[], PetscInt *ornt, PetscBool *found) 9405d71ae5a4SJacob Faibussowitsch { 9406b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetNumVertices(ct); 940785036b15SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2; 9408b5a892a1SMatthew G. Knepley PetscInt o, c; 9409b5a892a1SMatthew G. Knepley 9410b5a892a1SMatthew G. Knepley PetscFunctionBegin; 94119371c9d4SSatish Balay if (!nO) { 94129371c9d4SSatish Balay *ornt = 0; 94139371c9d4SSatish Balay *found = PETSC_TRUE; 94143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 94159371c9d4SSatish Balay } 9416b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 941785036b15SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetVertexArrangement(ct, o); 9418b5a892a1SMatthew G. Knepley 94199371c9d4SSatish Balay for (c = 0; c < cS; ++c) 94209371c9d4SSatish Balay if (sourceVert[arr[c]] != targetVert[c]) break; 94219371c9d4SSatish Balay if (c == cS) { 94229371c9d4SSatish Balay *ornt = o; 94239371c9d4SSatish Balay break; 94249371c9d4SSatish Balay } 9425b5a892a1SMatthew G. Knepley } 9426b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 94273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9428b5a892a1SMatthew G. Knepley } 9429b5a892a1SMatthew G. Knepley 9430cc4c1da9SBarry Smith /*@ 9431bb7acecfSBarry Smith DMPolytopeGetVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9432b5a892a1SMatthew G. Knepley 943320f4b53cSBarry Smith Not Collective 9434b5a892a1SMatthew G. Knepley 9435b5a892a1SMatthew G. Knepley Input Parameters: 9436bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9437b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of vertices 9438b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of vertices 9439b5a892a1SMatthew G. Knepley 94402fe279fdSBarry Smith Output Parameter: 9441bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9442b5a892a1SMatthew G. Knepley 9443b5a892a1SMatthew G. Knepley Level: advanced 9444b5a892a1SMatthew G. Knepley 9445bb7acecfSBarry Smith Note: 9446bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchVertexOrientation()` except it errors if not orientation is possible. 9447bb7acecfSBarry Smith 944873ff1848SBarry Smith Developer Note: 9449bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchVertexOrientation()` and error if none is found 9450bb7acecfSBarry Smith 94511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetOrientation()` 9452b5a892a1SMatthew G. Knepley @*/ 9453d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetVertexOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9454d71ae5a4SJacob Faibussowitsch { 9455b5a892a1SMatthew G. Knepley PetscBool found; 9456b5a892a1SMatthew G. Knepley 9457b5a892a1SMatthew G. Knepley PetscFunctionBegin; 94589566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchVertexOrientation(ct, sourceCone, targetCone, ornt, &found)); 94597a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 94603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9461b5a892a1SMatthew G. Knepley } 9462012bc364SMatthew G. Knepley 9463cc4c1da9SBarry Smith /*@ 9464012bc364SMatthew G. Knepley DMPolytopeInCellTest - Check whether a point lies inside the reference cell of given type 9465012bc364SMatthew G. Knepley 946620f4b53cSBarry Smith Not Collective 9467012bc364SMatthew G. Knepley 9468012bc364SMatthew G. Knepley Input Parameters: 9469bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9470012bc364SMatthew G. Knepley - point - Coordinates of the point 9471012bc364SMatthew G. Knepley 94722fe279fdSBarry Smith Output Parameter: 9473012bc364SMatthew G. Knepley . inside - Flag indicating whether the point is inside the reference cell of given type 9474012bc364SMatthew G. Knepley 9475012bc364SMatthew G. Knepley Level: advanced 9476012bc364SMatthew G. Knepley 94771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMLocatePoints()` 9478012bc364SMatthew G. Knepley @*/ 9479d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeInCellTest(DMPolytopeType ct, const PetscReal point[], PetscBool *inside) 9480d71ae5a4SJacob Faibussowitsch { 9481012bc364SMatthew G. Knepley PetscReal sum = 0.0; 9482012bc364SMatthew G. Knepley PetscInt d; 9483012bc364SMatthew G. Knepley 9484012bc364SMatthew G. Knepley PetscFunctionBegin; 9485012bc364SMatthew G. Knepley *inside = PETSC_TRUE; 9486012bc364SMatthew G. Knepley switch (ct) { 9487012bc364SMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 9488012bc364SMatthew G. Knepley case DM_POLYTOPE_TETRAHEDRON: 9489012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) { 94909371c9d4SSatish Balay if (point[d] < -1.0) { 94919371c9d4SSatish Balay *inside = PETSC_FALSE; 94929371c9d4SSatish Balay break; 94939371c9d4SSatish Balay } 9494012bc364SMatthew G. Knepley sum += point[d]; 9495012bc364SMatthew G. Knepley } 94969371c9d4SSatish Balay if (sum > PETSC_SMALL) { 94979371c9d4SSatish Balay *inside = PETSC_FALSE; 94989371c9d4SSatish Balay break; 94999371c9d4SSatish Balay } 9500012bc364SMatthew G. Knepley break; 9501012bc364SMatthew G. Knepley case DM_POLYTOPE_QUADRILATERAL: 9502012bc364SMatthew G. Knepley case DM_POLYTOPE_HEXAHEDRON: 9503012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) 95049371c9d4SSatish Balay if (PetscAbsReal(point[d]) > 1. + PETSC_SMALL) { 95059371c9d4SSatish Balay *inside = PETSC_FALSE; 9506012bc364SMatthew G. Knepley break; 95079371c9d4SSatish Balay } 95089371c9d4SSatish Balay break; 9509d71ae5a4SJacob Faibussowitsch default: 9510d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported polytope type %s", DMPolytopeTypes[ct]); 9511012bc364SMatthew G. Knepley } 95123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9513012bc364SMatthew G. Knepley } 9514adc21957SMatthew G. Knepley 9515adc21957SMatthew G. Knepley /*@ 9516adc21957SMatthew G. Knepley DMReorderSectionSetDefault - Set flag indicating whether the local section should be reordered by default 9517adc21957SMatthew G. Knepley 9518adc21957SMatthew G. Knepley Logically collective 9519adc21957SMatthew G. Knepley 9520adc21957SMatthew G. Knepley Input Parameters: 9521adc21957SMatthew G. Knepley + dm - The DM 9522adc21957SMatthew G. Knepley - reorder - Flag for reordering 9523adc21957SMatthew G. Knepley 9524adc21957SMatthew G. Knepley Level: intermediate 9525adc21957SMatthew G. Knepley 9526adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetDefault()` 9527adc21957SMatthew G. Knepley @*/ 9528adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetDefault(DM dm, DMReorderDefaultFlag reorder) 9529adc21957SMatthew G. Knepley { 9530adc21957SMatthew G. Knepley PetscFunctionBegin; 9531adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9532adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionSetDefault_C", (DM, DMReorderDefaultFlag), (dm, reorder)); 9533adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9534adc21957SMatthew G. Knepley } 9535adc21957SMatthew G. Knepley 9536adc21957SMatthew G. Knepley /*@ 9537adc21957SMatthew G. Knepley DMReorderSectionGetDefault - Get flag indicating whether the local section should be reordered by default 9538adc21957SMatthew G. Knepley 9539adc21957SMatthew G. Knepley Not collective 9540adc21957SMatthew G. Knepley 9541adc21957SMatthew G. Knepley Input Parameter: 9542adc21957SMatthew G. Knepley . dm - The DM 9543adc21957SMatthew G. Knepley 9544adc21957SMatthew G. Knepley Output Parameter: 9545adc21957SMatthew G. Knepley . reorder - Flag for reordering 9546adc21957SMatthew G. Knepley 9547adc21957SMatthew G. Knepley Level: intermediate 9548adc21957SMatthew G. Knepley 9549adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()` 9550adc21957SMatthew G. Knepley @*/ 9551adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetDefault(DM dm, DMReorderDefaultFlag *reorder) 9552adc21957SMatthew G. Knepley { 9553adc21957SMatthew G. Knepley PetscFunctionBegin; 9554adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9555adc21957SMatthew G. Knepley PetscAssertPointer(reorder, 2); 9556adc21957SMatthew G. Knepley *reorder = DM_REORDER_DEFAULT_NOTSET; 9557adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionGetDefault_C", (DM, DMReorderDefaultFlag *), (dm, reorder)); 9558adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9559adc21957SMatthew G. Knepley } 9560adc21957SMatthew G. Knepley 9561cc4c1da9SBarry Smith /*@ 9562adc21957SMatthew G. Knepley DMReorderSectionSetType - Set the type of local section reordering 9563adc21957SMatthew G. Knepley 9564adc21957SMatthew G. Knepley Logically collective 9565adc21957SMatthew G. Knepley 9566adc21957SMatthew G. Knepley Input Parameters: 9567adc21957SMatthew G. Knepley + dm - The DM 9568adc21957SMatthew G. Knepley - reorder - The reordering method 9569adc21957SMatthew G. Knepley 9570adc21957SMatthew G. Knepley Level: intermediate 9571adc21957SMatthew G. Knepley 9572adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetType()`, `DMReorderSectionSetDefault()` 9573adc21957SMatthew G. Knepley @*/ 9574adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetType(DM dm, MatOrderingType reorder) 9575adc21957SMatthew G. Knepley { 9576adc21957SMatthew G. Knepley PetscFunctionBegin; 9577adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9578adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionSetType_C", (DM, MatOrderingType), (dm, reorder)); 9579adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9580adc21957SMatthew G. Knepley } 9581adc21957SMatthew G. Knepley 9582cc4c1da9SBarry Smith /*@ 9583adc21957SMatthew G. Knepley DMReorderSectionGetType - Get the reordering type for the local section 9584adc21957SMatthew G. Knepley 9585adc21957SMatthew G. Knepley Not collective 9586adc21957SMatthew G. Knepley 9587adc21957SMatthew G. Knepley Input Parameter: 9588adc21957SMatthew G. Knepley . dm - The DM 9589adc21957SMatthew G. Knepley 9590adc21957SMatthew G. Knepley Output Parameter: 9591adc21957SMatthew G. Knepley . reorder - The reordering method 9592adc21957SMatthew G. Knepley 9593adc21957SMatthew G. Knepley Level: intermediate 9594adc21957SMatthew G. Knepley 9595adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()`, `DMReorderSectionGetDefault()` 9596adc21957SMatthew G. Knepley @*/ 9597adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetType(DM dm, MatOrderingType *reorder) 9598adc21957SMatthew G. Knepley { 9599adc21957SMatthew G. Knepley PetscFunctionBegin; 9600adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9601adc21957SMatthew G. Knepley PetscAssertPointer(reorder, 2); 9602adc21957SMatthew G. Knepley *reorder = NULL; 9603adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionGetType_C", (DM, MatOrderingType *), (dm, reorder)); 9604adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9605adc21957SMatthew G. Knepley } 9606