xref: /petsc/src/dm/interface/dm.c (revision ac9d17c75cb5e991458e9675ca6ec07d361dad47)
1d0295fc0SJunchao Zhang #include <petscvec.h>
2af0996ceSBarry Smith #include <petsc/private/dmimpl.h>      /*I      "petscdm.h"          I*/
3c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I      "petscdmlabel.h"     I*/
4e6f8dbb6SToby Isaac #include <petsc/private/petscdsimpl.h> /*I      "petscds.h"     I*/
53e922f36SToby Isaac #include <petscdmplex.h>
6d2b2dc1eSMatthew G. Knepley #include <petscdmceed.h>
7f19dbd58SToby Isaac #include <petscdmfield.h>
80c312b8eSJed Brown #include <petscsf.h>
92764a2aaSMatthew G. Knepley #include <petscds.h>
1047c6ae99SBarry Smith 
11f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED
12f918ec44SMatthew G. Knepley   #include <petscfeceed.h>
13f918ec44SMatthew G. Knepley #endif
14f918ec44SMatthew G. Knepley 
15732e2eb9SMatthew G Knepley PetscClassId DM_CLASSID;
16d67d17b1SMatthew G. Knepley PetscClassId DMLABEL_CLASSID;
1742d0c57aSJames Wright PetscLogEvent DM_Convert, DM_GlobalToLocal, DM_LocalToGlobal, DM_LocalToLocal, DM_LocatePoints, DM_Coarsen, DM_Refine, DM_CreateInterpolation, DM_CreateRestriction, DM_CreateInjection, DM_CreateMatrix, DM_CreateMassMatrix, DM_Load, DM_View, DM_AdaptInterpolator, DM_ProjectFunction;
1867a56275SMatthew G Knepley 
19ea78f98cSLisandro Dalcin const char *const DMBoundaryTypes[]          = {"NONE", "GHOSTED", "MIRROR", "PERIODIC", "TWIST", "DMBoundaryType", "DM_BOUNDARY_", NULL};
20d1b3049bSMatthew G. Knepley const char *const DMBoundaryConditionTypes[] = {"INVALID", "ESSENTIAL", "NATURAL", "INVALID", "INVALID", "ESSENTIAL_FIELD", "NATURAL_FIELD", "INVALID", "INVALID", "ESSENTIAL_BD_FIELD", "NATURAL_RIEMANN", "DMBoundaryConditionType", "DM_BC_", NULL};
210e762ea3SJed Brown const char *const DMBlockingTypes[]          = {"TOPOLOGICAL_POINT", "FIELD_NODE", "DMBlockingType", "DM_BLOCKING_", NULL};
22476787b7SMatthew G. Knepley const char *const DMPolytopeTypes[] =
23476787b7SMatthew G. Knepley   {"vertex",  "segment",      "tensor_segment", "triangle", "quadrilateral",  "tensor_quad",  "tetrahedron", "hexahedron", "triangular_prism", "tensor_triangular_prism", "tensor_quadrilateral_prism", "pyramid", "FV_ghost_cell", "interior_ghost_cell",
24476787b7SMatthew G. Knepley    "unknown", "unknown_cell", "unknown_face",   "invalid",  "DMPolytopeType", "DM_POLYTOPE_", NULL};
252cbb9b06SVaclav Hapla const char *const DMCopyLabelsModes[] = {"replace", "keep", "fail", "DMCopyLabelsMode", "DM_COPY_LABELS_", NULL};
2660c22052SBarry Smith 
27a4121054SBarry Smith /*@
28bb7acecfSBarry Smith   DMCreate - Creates an empty `DM` object. `DM`s are the abstract objects in PETSc that mediate between meshes and discretizations and the
290b4b7b1cSBarry Smith   algebraic solvers, time integrators, and optimization algorithms in PETSc.
30a4121054SBarry Smith 
31d083f849SBarry Smith   Collective
32a4121054SBarry Smith 
33a4121054SBarry Smith   Input Parameter:
34bb7acecfSBarry Smith . comm - The communicator for the `DM` object
35a4121054SBarry Smith 
36a4121054SBarry Smith   Output Parameter:
37bb7acecfSBarry Smith . dm - The `DM` object
38a4121054SBarry Smith 
39a4121054SBarry Smith   Level: beginner
40a4121054SBarry Smith 
41bb7acecfSBarry Smith   Notes:
42bb7acecfSBarry Smith   See `DMType` for a brief summary of available `DM`.
43bb7acecfSBarry Smith 
44bb7acecfSBarry Smith   The type must then be set with `DMSetType()`. If you never call `DMSetType()` it will generate an
450b4b7b1cSBarry Smith   error when you try to use the `dm`.
460b4b7b1cSBarry Smith 
470b4b7b1cSBarry Smith   `DM` is an orphan initialism or orphan acronym, the letters have no meaning and never did.
48bb7acecfSBarry Smith 
491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMType`, `DMDACreate()`, `DMDA`, `DMSLICED`, `DMCOMPOSITE`, `DMPLEX`, `DMMOAB`, `DMNETWORK`
50a4121054SBarry Smith @*/
51d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreate(MPI_Comm comm, DM *dm)
52d71ae5a4SJacob Faibussowitsch {
53a4121054SBarry Smith   DM      v;
54e5e52638SMatthew G. Knepley   PetscDS ds;
55a4121054SBarry Smith 
56a4121054SBarry Smith   PetscFunctionBegin;
574f572ea9SToby Isaac   PetscAssertPointer(dm, 2);
58377f809aSBarry Smith 
599566063dSJacob Faibussowitsch   PetscCall(DMInitializePackage());
609566063dSJacob Faibussowitsch   PetscCall(PetscHeaderCreate(v, DM_CLASSID, "DM", "Distribution Manager", "DM", comm, DMDestroy, DMView));
6162e5d2d2SJDBetteridge   ((PetscObject)v)->non_cyclic_references = &DMCountNonCyclicReferences;
6249be4549SMatthew G. Knepley   v->setupcalled                          = PETSC_FALSE;
6349be4549SMatthew G. Knepley   v->setfromoptionscalled                 = PETSC_FALSE;
640298fd71SBarry Smith   v->ltogmap                              = NULL;
65a4ea9b21SRichard Tran Mills   v->bind_below                           = 0;
661411c6eeSJed Brown   v->bs                                   = 1;
67171400e9SBarry Smith   v->coloringtype                         = IS_COLORING_GLOBAL;
689566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &v->sf));
699566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &v->sectionSF));
70c58f1c22SToby Isaac   v->labels                    = NULL;
7134aa8a36SMatthew G. Knepley   v->adjacency[0]              = PETSC_FALSE;
7234aa8a36SMatthew G. Knepley   v->adjacency[1]              = PETSC_TRUE;
73c58f1c22SToby Isaac   v->depthLabel                = NULL;
74ba2698f1SMatthew G. Knepley   v->celltypeLabel             = NULL;
751bb6d2a8SBarry Smith   v->localSection              = NULL;
761bb6d2a8SBarry Smith   v->globalSection             = NULL;
773b8ba7d1SJed Brown   v->defaultConstraint.section = NULL;
783b8ba7d1SJed Brown   v->defaultConstraint.mat     = NULL;
7979769bd5SJed Brown   v->defaultConstraint.bias    = NULL;
806858538eSMatthew G. Knepley   v->coordinates[0].dim        = PETSC_DEFAULT;
816858538eSMatthew G. Knepley   v->coordinates[1].dim        = PETSC_DEFAULT;
826858538eSMatthew G. Knepley   v->sparseLocalize            = PETSC_TRUE;
8396173672SStefano Zampini   v->dim                       = PETSC_DETERMINE;
84435a35e8SMatthew G Knepley   {
85435a35e8SMatthew G Knepley     PetscInt i;
86435a35e8SMatthew G Knepley     for (i = 0; i < 10; ++i) {
870298fd71SBarry Smith       v->nullspaceConstructors[i]     = NULL;
88f9d4088aSMatthew G. Knepley       v->nearnullspaceConstructors[i] = NULL;
89435a35e8SMatthew G Knepley     }
90435a35e8SMatthew G Knepley   }
919566063dSJacob Faibussowitsch   PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds));
9207218a29SMatthew G. Knepley   PetscCall(DMSetRegionDS(v, NULL, NULL, ds, NULL));
939566063dSJacob Faibussowitsch   PetscCall(PetscDSDestroy(&ds));
949566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxCreate(&v->auxData));
9514f150ffSMatthew G. Knepley   v->dmBC              = NULL;
96a8fb8f29SToby Isaac   v->coarseMesh        = NULL;
97f4d763aaSMatthew G. Knepley   v->outputSequenceNum = -1;
98cdb7a50dSMatthew G. Knepley   v->outputSequenceVal = 0.0;
999566063dSJacob Faibussowitsch   PetscCall(DMSetVecType(v, VECSTANDARD));
1009566063dSJacob Faibussowitsch   PetscCall(DMSetMatType(v, MATAIJ));
1014a7a4c06SLawrence Mitchell 
1021411c6eeSJed Brown   *dm = v;
1033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
104a4121054SBarry Smith }
105a4121054SBarry Smith 
10638221697SMatthew G. Knepley /*@
107bb7acecfSBarry Smith   DMClone - Creates a `DM` object with the same topology as the original.
10838221697SMatthew G. Knepley 
109d083f849SBarry Smith   Collective
11038221697SMatthew G. Knepley 
11138221697SMatthew G. Knepley   Input Parameter:
112bb7acecfSBarry Smith . dm - The original `DM` object
11338221697SMatthew G. Knepley 
11438221697SMatthew G. Knepley   Output Parameter:
115bb7acecfSBarry Smith . newdm - The new `DM` object
11638221697SMatthew G. Knepley 
11738221697SMatthew G. Knepley   Level: beginner
11838221697SMatthew G. Knepley 
1191cb8cacdSPatrick Sanan   Notes:
120bb7acecfSBarry Smith   For some `DM` implementations this is a shallow clone, the result of which may share (reference counted) information with its parent. For example,
121bb7acecfSBarry Smith   `DMClone()` applied to a `DMPLEX` object will result in a new `DMPLEX` that shares the topology with the original `DMPLEX`. It does not
122bb7acecfSBarry Smith   share the `PetscSection` of the original `DM`.
1231bb6d2a8SBarry Smith 
124bb7acecfSBarry Smith   The clone is considered set up if the original has been set up.
12589706ed2SPatrick Sanan 
126bb7acecfSBarry Smith   Use `DMConvert()` for a general way to create new `DM` from a given `DM`
127bb7acecfSBarry Smith 
12860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMSetType()`, `DMSetLocalSection()`, `DMSetGlobalSection()`, `DMPLEX`, `DMConvert()`
12938221697SMatthew G. Knepley @*/
130d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClone(DM dm, DM *newdm)
131d71ae5a4SJacob Faibussowitsch {
13238221697SMatthew G. Knepley   PetscSF              sf;
13338221697SMatthew G. Knepley   Vec                  coords;
13438221697SMatthew G. Knepley   void                *ctx;
135ec196627SMatthew G. Knepley   MatOrderingType      otype;
136ec196627SMatthew G. Knepley   DMReorderDefaultFlag flg;
1376858538eSMatthew G. Knepley   PetscInt             dim, cdim, i;
13838221697SMatthew G. Knepley 
13938221697SMatthew G. Knepley   PetscFunctionBegin;
14038221697SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1414f572ea9SToby Isaac   PetscAssertPointer(newdm, 2);
1429566063dSJacob Faibussowitsch   PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), newdm));
1439566063dSJacob Faibussowitsch   PetscCall(DMCopyLabels(dm, *newdm, PETSC_COPY_VALUES, PETSC_TRUE, DM_COPY_LABELS_FAIL));
144ddf8437dSMatthew G. Knepley   (*newdm)->leveldown     = dm->leveldown;
145ddf8437dSMatthew G. Knepley   (*newdm)->levelup       = dm->levelup;
146c8a6034eSMark   (*newdm)->prealloc_only = dm->prealloc_only;
147fc214432SJed Brown   (*newdm)->prealloc_skip = dm->prealloc_skip;
1489566063dSJacob Faibussowitsch   PetscCall(PetscFree((*newdm)->vectype));
1499566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*newdm)->vectype));
1509566063dSJacob Faibussowitsch   PetscCall(PetscFree((*newdm)->mattype));
1519566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*newdm)->mattype));
1529566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
1539566063dSJacob Faibussowitsch   PetscCall(DMSetDimension(*newdm, dim));
154dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, clone, newdm);
1553f22bcbcSToby Isaac   (*newdm)->setupcalled = dm->setupcalled;
1569566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sf));
1579566063dSJacob Faibussowitsch   PetscCall(DMSetPointSF(*newdm, sf));
1589566063dSJacob Faibussowitsch   PetscCall(DMGetApplicationContext(dm, &ctx));
1599566063dSJacob Faibussowitsch   PetscCall(DMSetApplicationContext(*newdm, ctx));
160ec196627SMatthew G. Knepley   PetscCall(DMReorderSectionGetDefault(dm, &flg));
161ec196627SMatthew G. Knepley   PetscCall(DMReorderSectionSetDefault(*newdm, flg));
162ec196627SMatthew G. Knepley   PetscCall(DMReorderSectionGetType(dm, &otype));
163ec196627SMatthew G. Knepley   PetscCall(DMReorderSectionSetType(*newdm, otype));
1646858538eSMatthew G. Knepley   for (i = 0; i < 2; ++i) {
1656858538eSMatthew G. Knepley     if (dm->coordinates[i].dm) {
166be4c1c3eSMatthew G. Knepley       DM           ncdm;
167be4c1c3eSMatthew G. Knepley       PetscSection cs;
1685a0206caSToby Isaac       PetscInt     pEnd = -1, pEndMax = -1;
169be4c1c3eSMatthew G. Knepley 
1706858538eSMatthew G. Knepley       PetscCall(DMGetLocalSection(dm->coordinates[i].dm, &cs));
1719566063dSJacob Faibussowitsch       if (cs) PetscCall(PetscSectionGetChart(cs, NULL, &pEnd));
172462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&pEnd, &pEndMax, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm)));
1735a0206caSToby Isaac       if (pEndMax >= 0) {
1746858538eSMatthew G. Knepley         PetscCall(DMClone(dm->coordinates[i].dm, &ncdm));
1756858538eSMatthew G. Knepley         PetscCall(DMCopyDisc(dm->coordinates[i].dm, ncdm));
1769566063dSJacob Faibussowitsch         PetscCall(DMSetLocalSection(ncdm, cs));
1775e50ca95SJames Wright         if (dm->coordinates[i].dm->periodic.setup) {
1785e50ca95SJames Wright           ncdm->periodic.setup = dm->coordinates[i].dm->periodic.setup;
1795e50ca95SJames Wright           PetscCall(ncdm->periodic.setup(ncdm));
1805e50ca95SJames Wright         }
1816858538eSMatthew G. Knepley         if (i) PetscCall(DMSetCellCoordinateDM(*newdm, ncdm));
1826858538eSMatthew G. Knepley         else PetscCall(DMSetCoordinateDM(*newdm, ncdm));
1839566063dSJacob Faibussowitsch         PetscCall(DMDestroy(&ncdm));
184be4c1c3eSMatthew G. Knepley       }
185be4c1c3eSMatthew G. Knepley     }
1866858538eSMatthew G. Knepley   }
1879566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
1889566063dSJacob Faibussowitsch   PetscCall(DMSetCoordinateDim(*newdm, cdim));
1899566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinatesLocal(dm, &coords));
19038221697SMatthew G. Knepley   if (coords) {
1919566063dSJacob Faibussowitsch     PetscCall(DMSetCoordinatesLocal(*newdm, coords));
19238221697SMatthew G. Knepley   } else {
1939566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinates(dm, &coords));
1949566063dSJacob Faibussowitsch     if (coords) PetscCall(DMSetCoordinates(*newdm, coords));
19538221697SMatthew G. Knepley   }
1966858538eSMatthew G. Knepley   PetscCall(DMGetCellCoordinatesLocal(dm, &coords));
1976858538eSMatthew G. Knepley   if (coords) {
1986858538eSMatthew G. Knepley     PetscCall(DMSetCellCoordinatesLocal(*newdm, coords));
1996858538eSMatthew G. Knepley   } else {
2006858538eSMatthew G. Knepley     PetscCall(DMGetCellCoordinates(dm, &coords));
2016858538eSMatthew G. Knepley     if (coords) PetscCall(DMSetCellCoordinates(*newdm, coords));
2026858538eSMatthew G. Knepley   }
20390b157c4SStefano Zampini   {
2044fb89dddSMatthew G. Knepley     const PetscReal *maxCell, *Lstart, *L;
2056858538eSMatthew G. Knepley 
2064fb89dddSMatthew G. Knepley     PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
2074fb89dddSMatthew G. Knepley     PetscCall(DMSetPeriodicity(*newdm, maxCell, Lstart, L));
208c6b900c6SMatthew G. Knepley   }
20934aa8a36SMatthew G. Knepley   {
21034aa8a36SMatthew G. Knepley     PetscBool useCone, useClosure;
21134aa8a36SMatthew G. Knepley 
2129566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, &useCone, &useClosure));
2139566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(*newdm, PETSC_DEFAULT, useCone, useClosure));
21434aa8a36SMatthew G. Knepley   }
2153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21638221697SMatthew G. Knepley }
21738221697SMatthew G. Knepley 
2185d83a8b1SBarry Smith /*@
2195d83a8b1SBarry Smith   DMSetVecType - Sets the type of vector to be created with `DMCreateLocalVector()` and `DMCreateGlobalVector()`
2209a42bb27SBarry Smith 
22120f4b53cSBarry Smith   Logically Collective
2229a42bb27SBarry Smith 
223147403d9SBarry Smith   Input Parameters:
22432546409SMatthew G. Knepley + dm    - initial distributed array
225bb7acecfSBarry Smith - ctype - the vector type, for example `VECSTANDARD`, `VECCUDA`, or `VECVIENNACL`
2269a42bb27SBarry Smith 
22720f4b53cSBarry Smith   Options Database Key:
228147403d9SBarry Smith . -dm_vec_type ctype - the type of vector to create
2299a42bb27SBarry Smith 
2309a42bb27SBarry Smith   Level: intermediate
2319a42bb27SBarry Smith 
23260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMGetVecType()`, `DMSetMatType()`, `DMGetMatType()`,
233bb7acecfSBarry Smith           `VECSTANDARD`, `VECCUDA`, `VECVIENNACL`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`
2349a42bb27SBarry Smith @*/
23532546409SMatthew G. Knepley PetscErrorCode DMSetVecType(DM dm, VecType ctype)
236d71ae5a4SJacob Faibussowitsch {
23732546409SMatthew G. Knepley   char *tmp;
23832546409SMatthew G. Knepley 
2399a42bb27SBarry Smith   PetscFunctionBegin;
24032546409SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
24132546409SMatthew G. Knepley   PetscAssertPointer(ctype, 2);
24232546409SMatthew G. Knepley   tmp = (char *)dm->vectype;
24332546409SMatthew G. Knepley   PetscCall(PetscStrallocpy(ctype, (char **)&dm->vectype));
24432546409SMatthew G. Knepley   PetscCall(PetscFree(tmp));
2453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2469a42bb27SBarry Smith }
2479a42bb27SBarry Smith 
2485d83a8b1SBarry Smith /*@
249bb7acecfSBarry Smith   DMGetVecType - Gets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()`
250c0dedaeaSBarry Smith 
25120f4b53cSBarry Smith   Logically Collective
252c0dedaeaSBarry Smith 
253c0dedaeaSBarry Smith   Input Parameter:
254c0dedaeaSBarry Smith . da - initial distributed array
255c0dedaeaSBarry Smith 
256c0dedaeaSBarry Smith   Output Parameter:
257c0dedaeaSBarry Smith . ctype - the vector type
258c0dedaeaSBarry Smith 
259c0dedaeaSBarry Smith   Level: intermediate
260c0dedaeaSBarry Smith 
26160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMSetMatType()`, `DMGetMatType()`, `DMSetVecType()`
262c0dedaeaSBarry Smith @*/
263d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetVecType(DM da, VecType *ctype)
264d71ae5a4SJacob Faibussowitsch {
265c0dedaeaSBarry Smith   PetscFunctionBegin;
266c0dedaeaSBarry Smith   PetscValidHeaderSpecific(da, DM_CLASSID, 1);
267c0dedaeaSBarry Smith   *ctype = da->vectype;
2683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
269c0dedaeaSBarry Smith }
270c0dedaeaSBarry Smith 
2715f1ad066SMatthew G Knepley /*@
272bb7acecfSBarry Smith   VecGetDM - Gets the `DM` defining the data layout of the vector
2735f1ad066SMatthew G Knepley 
27420f4b53cSBarry Smith   Not Collective
2755f1ad066SMatthew G Knepley 
2765f1ad066SMatthew G Knepley   Input Parameter:
277bb7acecfSBarry Smith . v - The `Vec`
2785f1ad066SMatthew G Knepley 
2795f1ad066SMatthew G Knepley   Output Parameter:
280bb7acecfSBarry Smith . dm - The `DM`
2815f1ad066SMatthew G Knepley 
2825f1ad066SMatthew G Knepley   Level: intermediate
2835f1ad066SMatthew G Knepley 
284bb7acecfSBarry Smith   Note:
285bb7acecfSBarry Smith   A `Vec` may not have a `DM` associated with it.
286bb7acecfSBarry Smith 
2871cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecSetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()`
2885f1ad066SMatthew G Knepley @*/
289d71ae5a4SJacob Faibussowitsch PetscErrorCode VecGetDM(Vec v, DM *dm)
290d71ae5a4SJacob Faibussowitsch {
2915f1ad066SMatthew G Knepley   PetscFunctionBegin;
2925f1ad066SMatthew G Knepley   PetscValidHeaderSpecific(v, VEC_CLASSID, 1);
2934f572ea9SToby Isaac   PetscAssertPointer(dm, 2);
2949566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)v, "__PETSc_dm", (PetscObject *)dm));
2953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2965f1ad066SMatthew G Knepley }
2975f1ad066SMatthew G Knepley 
2985f1ad066SMatthew G Knepley /*@
299bb7acecfSBarry Smith   VecSetDM - Sets the `DM` defining the data layout of the vector.
3005f1ad066SMatthew G Knepley 
30120f4b53cSBarry Smith   Not Collective
3025f1ad066SMatthew G Knepley 
3035f1ad066SMatthew G Knepley   Input Parameters:
304bb7acecfSBarry Smith + v  - The `Vec`
305bb7acecfSBarry Smith - dm - The `DM`
3065f1ad066SMatthew G Knepley 
30720f4b53cSBarry Smith   Level: developer
30820f4b53cSBarry Smith 
30973ff1848SBarry Smith   Notes:
310bb7acecfSBarry Smith   This is rarely used, generally one uses `DMGetLocalVector()` or  `DMGetGlobalVector()` to create a vector associated with a given `DM`
311d9805387SMatthew G. Knepley 
312bb7acecfSBarry Smith   This is NOT the same as `DMCreateGlobalVector()` since it does not change the view methods or perform other customization, but merely sets the `DM` member.
313bb7acecfSBarry Smith 
3141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecGetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()`
3155f1ad066SMatthew G Knepley @*/
316d71ae5a4SJacob Faibussowitsch PetscErrorCode VecSetDM(Vec v, DM dm)
317d71ae5a4SJacob Faibussowitsch {
3185f1ad066SMatthew G Knepley   PetscFunctionBegin;
3195f1ad066SMatthew G Knepley   PetscValidHeaderSpecific(v, VEC_CLASSID, 1);
320d7f50e27SLisandro Dalcin   if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2);
3219566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)v, "__PETSc_dm", (PetscObject)dm));
3223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3235f1ad066SMatthew G Knepley }
3245f1ad066SMatthew G Knepley 
325cc4c1da9SBarry Smith /*@
326bb7acecfSBarry Smith   DMSetISColoringType - Sets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM`
3278f1509bcSBarry Smith 
32820f4b53cSBarry Smith   Logically Collective
3298f1509bcSBarry Smith 
3308f1509bcSBarry Smith   Input Parameters:
331bb7acecfSBarry Smith + dm    - the `DM` context
3328f1509bcSBarry Smith - ctype - the matrix type
3338f1509bcSBarry Smith 
33420f4b53cSBarry Smith   Options Database Key:
3358f1509bcSBarry Smith . -dm_is_coloring_type - global or local
3368f1509bcSBarry Smith 
3378f1509bcSBarry Smith   Level: intermediate
3388f1509bcSBarry Smith 
3391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`,
340bb7acecfSBarry Smith           `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL`
3418f1509bcSBarry Smith @*/
342d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetISColoringType(DM dm, ISColoringType ctype)
343d71ae5a4SJacob Faibussowitsch {
3448f1509bcSBarry Smith   PetscFunctionBegin;
3458f1509bcSBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3468f1509bcSBarry Smith   dm->coloringtype = ctype;
3473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3488f1509bcSBarry Smith }
3498f1509bcSBarry Smith 
350cc4c1da9SBarry Smith /*@
351bb7acecfSBarry Smith   DMGetISColoringType - Gets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM`
352521d9a4cSLisandro Dalcin 
35320f4b53cSBarry Smith   Logically Collective
354521d9a4cSLisandro Dalcin 
355521d9a4cSLisandro Dalcin   Input Parameter:
356bb7acecfSBarry Smith . dm - the `DM` context
3578f1509bcSBarry Smith 
3588f1509bcSBarry Smith   Output Parameter:
3598f1509bcSBarry Smith . ctype - the matrix type
3608f1509bcSBarry Smith 
36120f4b53cSBarry Smith   Options Database Key:
3628f1509bcSBarry Smith . -dm_is_coloring_type - global or local
3638f1509bcSBarry Smith 
3648f1509bcSBarry Smith   Level: intermediate
3658f1509bcSBarry Smith 
3661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`,
36742747ad1SJacob Faibussowitsch           `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL`
3688f1509bcSBarry Smith @*/
369d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetISColoringType(DM dm, ISColoringType *ctype)
370d71ae5a4SJacob Faibussowitsch {
3718f1509bcSBarry Smith   PetscFunctionBegin;
3728f1509bcSBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3738f1509bcSBarry Smith   *ctype = dm->coloringtype;
3743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3758f1509bcSBarry Smith }
3768f1509bcSBarry Smith 
377cc4c1da9SBarry Smith /*@
378bb7acecfSBarry Smith   DMSetMatType - Sets the type of matrix created with `DMCreateMatrix()`
3798f1509bcSBarry Smith 
38020f4b53cSBarry Smith   Logically Collective
3818f1509bcSBarry Smith 
3828f1509bcSBarry Smith   Input Parameters:
383bb7acecfSBarry Smith + dm    - the `DM` context
384bb7acecfSBarry Smith - ctype - the matrix type, for example `MATMPIAIJ`
385521d9a4cSLisandro Dalcin 
38620f4b53cSBarry Smith   Options Database Key:
387bb7acecfSBarry Smith . -dm_mat_type ctype - the type of the matrix to create, for example mpiaij
388521d9a4cSLisandro Dalcin 
389521d9a4cSLisandro Dalcin   Level: intermediate
390521d9a4cSLisandro Dalcin 
39142747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatType`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMGetMatType()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()`
392521d9a4cSLisandro Dalcin @*/
393d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatType(DM dm, MatType ctype)
394d71ae5a4SJacob Faibussowitsch {
39532546409SMatthew G. Knepley   char *tmp;
39632546409SMatthew G. Knepley 
397521d9a4cSLisandro Dalcin   PetscFunctionBegin;
398521d9a4cSLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
39932546409SMatthew G. Knepley   PetscAssertPointer(ctype, 2);
40032546409SMatthew G. Knepley   tmp = (char *)dm->mattype;
4019566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(ctype, (char **)&dm->mattype));
40232546409SMatthew G. Knepley   PetscCall(PetscFree(tmp));
4033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
404521d9a4cSLisandro Dalcin }
405521d9a4cSLisandro Dalcin 
406cc4c1da9SBarry Smith /*@
40720f4b53cSBarry Smith   DMGetMatType - Gets the type of matrix that would be created with `DMCreateMatrix()`
408c0dedaeaSBarry Smith 
40920f4b53cSBarry Smith   Logically Collective
410c0dedaeaSBarry Smith 
411c0dedaeaSBarry Smith   Input Parameter:
412bb7acecfSBarry Smith . dm - the `DM` context
413c0dedaeaSBarry Smith 
414c0dedaeaSBarry Smith   Output Parameter:
415c0dedaeaSBarry Smith . ctype - the matrix type
416c0dedaeaSBarry Smith 
417c0dedaeaSBarry Smith   Level: intermediate
418c0dedaeaSBarry Smith 
41942747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMSetMatType()`
420c0dedaeaSBarry Smith @*/
421d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetMatType(DM dm, MatType *ctype)
422d71ae5a4SJacob Faibussowitsch {
423c0dedaeaSBarry Smith   PetscFunctionBegin;
424c0dedaeaSBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
425c0dedaeaSBarry Smith   *ctype = dm->mattype;
4263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
427c0dedaeaSBarry Smith }
428c0dedaeaSBarry Smith 
429c688c046SMatthew G Knepley /*@
430bb7acecfSBarry Smith   MatGetDM - Gets the `DM` defining the data layout of the matrix
431c688c046SMatthew G Knepley 
43220f4b53cSBarry Smith   Not Collective
433c688c046SMatthew G Knepley 
434c688c046SMatthew G Knepley   Input Parameter:
435bb7acecfSBarry Smith . A - The `Mat`
436c688c046SMatthew G Knepley 
437c688c046SMatthew G Knepley   Output Parameter:
438bb7acecfSBarry Smith . dm - The `DM`
439c688c046SMatthew G Knepley 
440c688c046SMatthew G Knepley   Level: intermediate
441c688c046SMatthew G Knepley 
442bb7acecfSBarry Smith   Note:
443bb7acecfSBarry Smith   A matrix may not have a `DM` associated with it
444bb7acecfSBarry Smith 
44573ff1848SBarry Smith   Developer Note:
446bb7acecfSBarry Smith   Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with the `Mat` through a `PetscObjectCompose()` operation
4478f1509bcSBarry Smith 
4481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatSetDM()`, `DMCreateMatrix()`, `DMSetMatType()`
449c688c046SMatthew G Knepley @*/
450d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDM(Mat A, DM *dm)
451d71ae5a4SJacob Faibussowitsch {
452c688c046SMatthew G Knepley   PetscFunctionBegin;
453c688c046SMatthew G Knepley   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
4544f572ea9SToby Isaac   PetscAssertPointer(dm, 2);
4559566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_dm", (PetscObject *)dm));
4563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
457c688c046SMatthew G Knepley }
458c688c046SMatthew G Knepley 
459c688c046SMatthew G Knepley /*@
460bb7acecfSBarry Smith   MatSetDM - Sets the `DM` defining the data layout of the matrix
461c688c046SMatthew G Knepley 
46220f4b53cSBarry Smith   Not Collective
463c688c046SMatthew G Knepley 
464c688c046SMatthew G Knepley   Input Parameters:
46520f4b53cSBarry Smith + A  - The `Mat`
46620f4b53cSBarry Smith - dm - The `DM`
467c688c046SMatthew G Knepley 
468bb7acecfSBarry Smith   Level: developer
469c688c046SMatthew G Knepley 
470bb7acecfSBarry Smith   Note:
471bb7acecfSBarry Smith   This is rarely used in practice, rather `DMCreateMatrix()` is used to create a matrix associated with a particular `DM`
472bb7acecfSBarry Smith 
47373ff1848SBarry Smith   Developer Note:
474bb7acecfSBarry Smith   Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with
475bb7acecfSBarry Smith   the `Mat` through a `PetscObjectCompose()` operation
4768f1509bcSBarry Smith 
4771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatGetDM()`, `DMCreateMatrix()`, `DMSetMatType()`
478c688c046SMatthew G Knepley @*/
479d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetDM(Mat A, DM dm)
480d71ae5a4SJacob Faibussowitsch {
481c688c046SMatthew G Knepley   PetscFunctionBegin;
482c688c046SMatthew G Knepley   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
4838865f1eaSKarl Rupp   if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2);
4849566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_dm", (PetscObject)dm));
4853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
486c688c046SMatthew G Knepley }
487c688c046SMatthew G Knepley 
488cc4c1da9SBarry Smith /*@
489bb7acecfSBarry Smith   DMSetOptionsPrefix - Sets the prefix prepended to all option names when searching through the options database
4909a42bb27SBarry Smith 
49120f4b53cSBarry Smith   Logically Collective
4929a42bb27SBarry Smith 
493d8d19677SJose E. Roman   Input Parameters:
49460225df5SJacob Faibussowitsch + dm     - the `DM` context
495bb7acecfSBarry Smith - prefix - the prefix to prepend
4969a42bb27SBarry Smith 
49720f4b53cSBarry Smith   Level: advanced
49820f4b53cSBarry Smith 
49920f4b53cSBarry Smith   Note:
5009a42bb27SBarry Smith   A hyphen (-) must NOT be given at the beginning of the prefix name.
5019a42bb27SBarry Smith   The first character of all runtime options is AUTOMATICALLY the hyphen.
5029a42bb27SBarry Smith 
5031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscObjectSetOptionsPrefix()`, `DMSetFromOptions()`
5049a42bb27SBarry Smith @*/
505d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOptionsPrefix(DM dm, const char prefix[])
506d71ae5a4SJacob Faibussowitsch {
5079a42bb27SBarry Smith   PetscFunctionBegin;
5089a42bb27SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5099566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, prefix));
5101baa6e33SBarry Smith   if (dm->sf) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sf, prefix));
5111baa6e33SBarry Smith   if (dm->sectionSF) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sectionSF, prefix));
5123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5139a42bb27SBarry Smith }
5149a42bb27SBarry Smith 
515cc4c1da9SBarry Smith /*@
516da81f932SPierre Jolivet   DMAppendOptionsPrefix - Appends an additional string to an already existing prefix used for searching for
517bb7acecfSBarry Smith   `DM` options in the options database.
51831697293SDave May 
51920f4b53cSBarry Smith   Logically Collective
52031697293SDave May 
52131697293SDave May   Input Parameters:
522bb7acecfSBarry Smith + dm     - the `DM` context
523bb7acecfSBarry Smith - prefix - the string to append to the current prefix
52431697293SDave May 
52520f4b53cSBarry Smith   Level: advanced
52620f4b53cSBarry Smith 
52720f4b53cSBarry Smith   Note:
528bb7acecfSBarry Smith   If the `DM` does not currently have an options prefix then this value is used alone as the prefix as if `DMSetOptionsPrefix()` had been called.
52931697293SDave May   A hyphen (-) must NOT be given at the beginning of the prefix name.
53031697293SDave May   The first character of all runtime options is AUTOMATICALLY the hyphen.
53131697293SDave May 
5321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMGetOptionsPrefix()`, `PetscObjectAppendOptionsPrefix()`, `DMSetFromOptions()`
53331697293SDave May @*/
534d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAppendOptionsPrefix(DM dm, const char prefix[])
535d71ae5a4SJacob Faibussowitsch {
53631697293SDave May   PetscFunctionBegin;
53731697293SDave May   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5389566063dSJacob Faibussowitsch   PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, prefix));
5393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
54031697293SDave May }
54131697293SDave May 
542cc4c1da9SBarry Smith /*@
54331697293SDave May   DMGetOptionsPrefix - Gets the prefix used for searching for all
544bb7acecfSBarry Smith   DM options in the options database.
54531697293SDave May 
54631697293SDave May   Not Collective
54731697293SDave May 
5482fe279fdSBarry Smith   Input Parameter:
549bb7acecfSBarry Smith . dm - the `DM` context
55031697293SDave May 
5512fe279fdSBarry Smith   Output Parameter:
55231697293SDave May . prefix - pointer to the prefix string used is returned
55331697293SDave May 
55431697293SDave May   Level: advanced
55531697293SDave May 
55673ff1848SBarry Smith   Fortran Note:
55720f4b53cSBarry Smith   Pass in a string 'prefix' of
55820f4b53cSBarry Smith   sufficient length to hold the prefix.
55920f4b53cSBarry Smith 
5601cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMAppendOptionsPrefix()`, `DMSetFromOptions()`
56131697293SDave May @*/
562d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOptionsPrefix(DM dm, const char *prefix[])
563d71ae5a4SJacob Faibussowitsch {
56431697293SDave May   PetscFunctionBegin;
56531697293SDave May   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5669566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, prefix));
5673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56831697293SDave May }
56931697293SDave May 
57062e5d2d2SJDBetteridge static PetscErrorCode DMCountNonCyclicReferences_Internal(DM dm, PetscBool recurseCoarse, PetscBool recurseFine, PetscInt *ncrefct)
571d71ae5a4SJacob Faibussowitsch {
5726eb26441SStefano Zampini   PetscInt refct = ((PetscObject)dm)->refct;
57388bdff64SToby Isaac 
57488bdff64SToby Isaac   PetscFunctionBegin;
575aab5bcd8SJed Brown   *ncrefct = 0;
57688bdff64SToby Isaac   if (dm->coarseMesh && dm->coarseMesh->fineMesh == dm) {
57788bdff64SToby Isaac     refct--;
57888bdff64SToby Isaac     if (recurseCoarse) {
57988bdff64SToby Isaac       PetscInt coarseCount;
58088bdff64SToby Isaac 
58162e5d2d2SJDBetteridge       PetscCall(DMCountNonCyclicReferences_Internal(dm->coarseMesh, PETSC_TRUE, PETSC_FALSE, &coarseCount));
58288bdff64SToby Isaac       refct += coarseCount;
58388bdff64SToby Isaac     }
58488bdff64SToby Isaac   }
58588bdff64SToby Isaac   if (dm->fineMesh && dm->fineMesh->coarseMesh == dm) {
58688bdff64SToby Isaac     refct--;
58788bdff64SToby Isaac     if (recurseFine) {
58888bdff64SToby Isaac       PetscInt fineCount;
58988bdff64SToby Isaac 
59062e5d2d2SJDBetteridge       PetscCall(DMCountNonCyclicReferences_Internal(dm->fineMesh, PETSC_FALSE, PETSC_TRUE, &fineCount));
59188bdff64SToby Isaac       refct += fineCount;
59288bdff64SToby Isaac     }
59388bdff64SToby Isaac   }
59488bdff64SToby Isaac   *ncrefct = refct;
5953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
59688bdff64SToby Isaac }
59788bdff64SToby Isaac 
59862e5d2d2SJDBetteridge /* Generic wrapper for DMCountNonCyclicReferences_Internal() */
59962e5d2d2SJDBetteridge PetscErrorCode DMCountNonCyclicReferences(PetscObject dm, PetscInt *ncrefct)
60062e5d2d2SJDBetteridge {
60162e5d2d2SJDBetteridge   PetscFunctionBegin;
60262e5d2d2SJDBetteridge   PetscCall(DMCountNonCyclicReferences_Internal((DM)dm, PETSC_TRUE, PETSC_TRUE, ncrefct));
6033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
60462e5d2d2SJDBetteridge }
60562e5d2d2SJDBetteridge 
606d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyLabelLinkList_Internal(DM dm)
607d71ae5a4SJacob Faibussowitsch {
6085d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
609354557abSToby Isaac 
610354557abSToby Isaac   PetscFunctionBegin;
611354557abSToby Isaac   /* destroy the labels */
612354557abSToby Isaac   while (next) {
613354557abSToby Isaac     DMLabelLink tmp = next->next;
614354557abSToby Isaac 
6155d80c0bfSVaclav Hapla     if (next->label == dm->depthLabel) dm->depthLabel = NULL;
616ba2698f1SMatthew G. Knepley     if (next->label == dm->celltypeLabel) dm->celltypeLabel = NULL;
6179566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&next->label));
6189566063dSJacob Faibussowitsch     PetscCall(PetscFree(next));
619354557abSToby Isaac     next = tmp;
620354557abSToby Isaac   }
6215d80c0bfSVaclav Hapla   dm->labels = NULL;
6223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
623354557abSToby Isaac }
624354557abSToby Isaac 
62566976f2fSJacob Faibussowitsch static PetscErrorCode DMDestroyCoordinates_Private(DMCoordinates *c)
626d71ae5a4SJacob Faibussowitsch {
6276858538eSMatthew G. Knepley   PetscFunctionBegin;
6286858538eSMatthew G. Knepley   c->dim = PETSC_DEFAULT;
6296858538eSMatthew G. Knepley   PetscCall(DMDestroy(&c->dm));
6306858538eSMatthew G. Knepley   PetscCall(VecDestroy(&c->x));
6316858538eSMatthew G. Knepley   PetscCall(VecDestroy(&c->xl));
6326858538eSMatthew G. Knepley   PetscCall(DMFieldDestroy(&c->field));
6333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6346858538eSMatthew G. Knepley }
6356858538eSMatthew G. Knepley 
6360764c050SBarry Smith /*@
637bb7acecfSBarry Smith   DMDestroy - Destroys a `DM`.
63847c6ae99SBarry Smith 
63920f4b53cSBarry Smith   Collective
64047c6ae99SBarry Smith 
64147c6ae99SBarry Smith   Input Parameter:
642bb7acecfSBarry Smith . dm - the `DM` object to destroy
64347c6ae99SBarry Smith 
64447c6ae99SBarry Smith   Level: developer
64547c6ae99SBarry Smith 
6461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMType`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
64747c6ae99SBarry Smith @*/
648d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroy(DM *dm)
649d71ae5a4SJacob Faibussowitsch {
6506eb26441SStefano Zampini   PetscInt cnt;
65147c6ae99SBarry Smith 
65247c6ae99SBarry Smith   PetscFunctionBegin;
6533ba16761SJacob Faibussowitsch   if (!*dm) PetscFunctionReturn(PETSC_SUCCESS);
654f4f49eeaSPierre Jolivet   PetscValidHeaderSpecific(*dm, DM_CLASSID, 1);
65587e657c6SBarry Smith 
65688bdff64SToby Isaac   /* count all non-cyclic references in the doubly-linked list of coarse<->fine meshes */
65762e5d2d2SJDBetteridge   PetscCall(DMCountNonCyclicReferences_Internal(*dm, PETSC_TRUE, PETSC_TRUE, &cnt));
658f4f49eeaSPierre Jolivet   --((PetscObject)*dm)->refct;
6599371c9d4SSatish Balay   if (--cnt > 0) {
6609371c9d4SSatish Balay     *dm = NULL;
6613ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
6629371c9d4SSatish Balay   }
663f4f49eeaSPierre Jolivet   if (((PetscObject)*dm)->refct < 0) PetscFunctionReturn(PETSC_SUCCESS);
664f4f49eeaSPierre Jolivet   ((PetscObject)*dm)->refct = 0;
6656eb26441SStefano Zampini 
6669566063dSJacob Faibussowitsch   PetscCall(DMClearGlobalVectors(*dm));
6679566063dSJacob Faibussowitsch   PetscCall(DMClearLocalVectors(*dm));
668974ca4ecSStefano Zampini   PetscCall(DMClearNamedGlobalVectors(*dm));
669974ca4ecSStefano Zampini   PetscCall(DMClearNamedLocalVectors(*dm));
6702348bcf4SPeter Brune 
671b17ce1afSJed Brown   /* Destroy the list of hooks */
672c833c3b5SJed Brown   {
673c833c3b5SJed Brown     DMCoarsenHookLink link, next;
674b17ce1afSJed Brown     for (link = (*dm)->coarsenhook; link; link = next) {
675b17ce1afSJed Brown       next = link->next;
6769566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
677b17ce1afSJed Brown     }
6780298fd71SBarry Smith     (*dm)->coarsenhook = NULL;
679c833c3b5SJed Brown   }
680c833c3b5SJed Brown   {
681c833c3b5SJed Brown     DMRefineHookLink link, next;
682c833c3b5SJed Brown     for (link = (*dm)->refinehook; link; link = next) {
683c833c3b5SJed Brown       next = link->next;
6849566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
685c833c3b5SJed Brown     }
6860298fd71SBarry Smith     (*dm)->refinehook = NULL;
687c833c3b5SJed Brown   }
688be081cd6SPeter Brune   {
689be081cd6SPeter Brune     DMSubDomainHookLink link, next;
690be081cd6SPeter Brune     for (link = (*dm)->subdomainhook; link; link = next) {
691be081cd6SPeter Brune       next = link->next;
6929566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
693be081cd6SPeter Brune     }
6940298fd71SBarry Smith     (*dm)->subdomainhook = NULL;
695be081cd6SPeter Brune   }
696baf369e7SPeter Brune   {
697baf369e7SPeter Brune     DMGlobalToLocalHookLink link, next;
698baf369e7SPeter Brune     for (link = (*dm)->gtolhook; link; link = next) {
699baf369e7SPeter Brune       next = link->next;
7009566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
701baf369e7SPeter Brune     }
7020298fd71SBarry Smith     (*dm)->gtolhook = NULL;
703baf369e7SPeter Brune   }
704d4d07f1eSToby Isaac   {
705d4d07f1eSToby Isaac     DMLocalToGlobalHookLink link, next;
706d4d07f1eSToby Isaac     for (link = (*dm)->ltoghook; link; link = next) {
707d4d07f1eSToby Isaac       next = link->next;
7089566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
709d4d07f1eSToby Isaac     }
710d4d07f1eSToby Isaac     (*dm)->ltoghook = NULL;
711d4d07f1eSToby Isaac   }
712aa1993deSMatthew G Knepley   /* Destroy the work arrays */
713aa1993deSMatthew G Knepley   {
714aa1993deSMatthew G Knepley     DMWorkLink link, next;
715835f2295SStefano Zampini     PetscCheck(!(*dm)->workout, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Work array still checked out %p %p", (void *)(*dm)->workout, (*dm)->workout->mem);
716aa1993deSMatthew G Knepley     for (link = (*dm)->workin; link; link = next) {
717aa1993deSMatthew G Knepley       next = link->next;
7189566063dSJacob Faibussowitsch       PetscCall(PetscFree(link->mem));
7199566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
720aa1993deSMatthew G Knepley     }
7210298fd71SBarry Smith     (*dm)->workin = NULL;
722aa1993deSMatthew G Knepley   }
723c58f1c22SToby Isaac   /* destroy the labels */
7249566063dSJacob Faibussowitsch   PetscCall(DMDestroyLabelLinkList_Internal(*dm));
725f4cdcedcSVaclav Hapla   /* destroy the fields */
7269566063dSJacob Faibussowitsch   PetscCall(DMClearFields(*dm));
727f4cdcedcSVaclav Hapla   /* destroy the boundaries */
728e6f8dbb6SToby Isaac   {
729e6f8dbb6SToby Isaac     DMBoundary next = (*dm)->boundary;
730e6f8dbb6SToby Isaac     while (next) {
731e6f8dbb6SToby Isaac       DMBoundary b = next;
732e6f8dbb6SToby Isaac 
733e6f8dbb6SToby Isaac       next = b->next;
7349566063dSJacob Faibussowitsch       PetscCall(PetscFree(b));
735e6f8dbb6SToby Isaac     }
736e6f8dbb6SToby Isaac   }
737b17ce1afSJed Brown 
7389566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&(*dm)->dmksp));
7399566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&(*dm)->dmsnes));
7409566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&(*dm)->dmts));
74152536dc3SBarry Smith 
74248a46eb9SPierre Jolivet   if ((*dm)->ctx && (*dm)->ctxdestroy) PetscCall((*(*dm)->ctxdestroy)(&(*dm)->ctx));
7439566063dSJacob Faibussowitsch   PetscCall(MatFDColoringDestroy(&(*dm)->fd));
7449566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&(*dm)->ltogmap));
7459566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->vectype));
7469566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->mattype));
74788ed4aceSMatthew G Knepley 
7489566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&(*dm)->localSection));
7499566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&(*dm)->globalSection));
750adc21957SMatthew G. Knepley   PetscCall(PetscFree((*dm)->reorderSectionType));
7519566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&(*dm)->map));
7529566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&(*dm)->defaultConstraint.section));
7539566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&(*dm)->defaultConstraint.mat));
7549566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&(*dm)->sf));
7559566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&(*dm)->sectionSF));
75648a46eb9SPierre Jolivet   if ((*dm)->sfNatural) PetscCall(PetscSFDestroy(&(*dm)->sfNatural));
7579566063dSJacob Faibussowitsch   PetscCall(PetscObjectDereference((PetscObject)(*dm)->sfMigration));
758e4d5475eSStefano Zampini   PetscCall(DMClearAuxiliaryVec(*dm));
7599566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxDestroy(&(*dm)->auxData));
76048a46eb9SPierre Jolivet   if ((*dm)->coarseMesh && (*dm)->coarseMesh->fineMesh == *dm) PetscCall(DMSetFineDM((*dm)->coarseMesh, NULL));
7616eb26441SStefano Zampini 
7629566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->coarseMesh));
76348a46eb9SPierre Jolivet   if ((*dm)->fineMesh && (*dm)->fineMesh->coarseMesh == *dm) PetscCall(DMSetCoarseDM((*dm)->fineMesh, NULL));
7649566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->fineMesh));
7654fb89dddSMatthew G. Knepley   PetscCall(PetscFree((*dm)->Lstart));
7669566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->L));
7679566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->maxCell));
7686858538eSMatthew G. Knepley   PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[0]));
7696858538eSMatthew G. Knepley   PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[1]));
7709566063dSJacob Faibussowitsch   if ((*dm)->transformDestroy) PetscCall((*(*dm)->transformDestroy)(*dm, (*dm)->transformCtx));
7719566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->transformDM));
7729566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&(*dm)->transform));
773ddedc8f6SJames Wright   for (PetscInt i = 0; i < (*dm)->periodic.num_affines; i++) {
774ddedc8f6SJames Wright     PetscCall(VecScatterDestroy(&(*dm)->periodic.affine_to_local[i]));
775ddedc8f6SJames Wright     PetscCall(VecDestroy(&(*dm)->periodic.affine[i]));
776ddedc8f6SJames Wright   }
777ddedc8f6SJames Wright   if ((*dm)->periodic.num_affines > 0) PetscCall(PetscFree2((*dm)->periodic.affine_to_local, (*dm)->periodic.affine));
7786636e97aSMatthew G Knepley 
7799566063dSJacob Faibussowitsch   PetscCall(DMClearDS(*dm));
7809566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->dmBC));
781e04113cfSBarry Smith   /* if memory was published with SAWs then destroy it */
7829566063dSJacob Faibussowitsch   PetscCall(PetscObjectSAWsViewOff((PetscObject)*dm));
783732e2eb9SMatthew G Knepley 
784213acdd3SPierre Jolivet   PetscTryTypeMethod(*dm, destroy);
7859566063dSJacob Faibussowitsch   PetscCall(DMMonitorCancel(*dm));
786d2b2dc1eSMatthew G. Knepley   PetscCall(DMCeedDestroy(&(*dm)->dmceed));
787f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED
7889566063dSJacob Faibussowitsch   PetscCallCEED(CeedElemRestrictionDestroy(&(*dm)->ceedERestrict));
7899566063dSJacob Faibussowitsch   PetscCallCEED(CeedDestroy(&(*dm)->ceed));
790f918ec44SMatthew G. Knepley #endif
791435a35e8SMatthew G Knepley   /* We do not destroy (*dm)->data here so that we can reference count backend objects */
7929566063dSJacob Faibussowitsch   PetscCall(PetscHeaderDestroy(dm));
7933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
79447c6ae99SBarry Smith }
79547c6ae99SBarry Smith 
796d7bf68aeSBarry Smith /*@
797bb7acecfSBarry Smith   DMSetUp - sets up the data structures inside a `DM` object
798d7bf68aeSBarry Smith 
79920f4b53cSBarry Smith   Collective
800d7bf68aeSBarry Smith 
801d7bf68aeSBarry Smith   Input Parameter:
802bb7acecfSBarry Smith . dm - the `DM` object to setup
803d7bf68aeSBarry Smith 
804bb7acecfSBarry Smith   Level: intermediate
805d7bf68aeSBarry Smith 
806bb7acecfSBarry Smith   Note:
807bb7acecfSBarry Smith   This is usually called after various parameter setting operations and `DMSetFromOptions()` are called on the `DM`
808bb7acecfSBarry Smith 
8091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
810d7bf68aeSBarry Smith @*/
811d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUp(DM dm)
812d71ae5a4SJacob Faibussowitsch {
813d7bf68aeSBarry Smith   PetscFunctionBegin;
814171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8153ba16761SJacob Faibussowitsch   if (dm->setupcalled) PetscFunctionReturn(PETSC_SUCCESS);
816dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, setup);
8178387afaaSJed Brown   dm->setupcalled = PETSC_TRUE;
8183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
819d7bf68aeSBarry Smith }
820d7bf68aeSBarry Smith 
821d7bf68aeSBarry Smith /*@
822bb7acecfSBarry Smith   DMSetFromOptions - sets parameters in a `DM` from the options database
823d7bf68aeSBarry Smith 
82420f4b53cSBarry Smith   Collective
825d7bf68aeSBarry Smith 
826d7bf68aeSBarry Smith   Input Parameter:
827bb7acecfSBarry Smith . dm - the `DM` object to set options for
828d7bf68aeSBarry Smith 
82920f4b53cSBarry Smith   Options Database Keys:
830bb7acecfSBarry Smith + -dm_preallocate_only                               - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros
831bb7acecfSBarry Smith . -dm_vec_type <type>                                - type of vector to create inside `DM`
832bb7acecfSBarry Smith . -dm_mat_type <type>                                - type of matrix to create inside `DM`
833a4ea9b21SRichard Tran Mills . -dm_is_coloring_type                               - <global or local>
83420f4b53cSBarry Smith . -dm_bind_below <n>                                 - bind (force execution on CPU) for `Vec` and `Mat` objects with local size (number of vector entries or matrix rows) below n; currently only supported for `DMDA`
83522d6dc08SStefano Zampini . -dm_plex_option_phases <ph0_, ph1_, ...>           - List of prefixes for option processing phases
83620f4b53cSBarry Smith . -dm_plex_filename <str>                            - File containing a mesh
8379318fe57SMatthew G. Knepley . -dm_plex_boundary_filename <str>                   - File containing a mesh boundary
838cd7e8a5eSksagiyam . -dm_plex_name <str>                                - Name of the mesh in the file
8395dca41c3SJed Brown . -dm_plex_shape <shape>                             - The domain shape, such as `BOX`, `SPHERE`, etc.
8409318fe57SMatthew G. Knepley . -dm_plex_cell <ct>                                 - Cell shape
8419318fe57SMatthew G. Knepley . -dm_plex_reference_cell_domain <bool>              - Use a reference cell domain
8429318fe57SMatthew G. Knepley . -dm_plex_dim <dim>                                 - Set the topological dimension
843bb7acecfSBarry Smith . -dm_plex_simplex <bool>                            - `PETSC_TRUE` for simplex elements, `PETSC_FALSE` for tensor elements
844bb7acecfSBarry Smith . -dm_plex_interpolate <bool>                        - `PETSC_TRUE` turns on topological interpolation (creating edges and faces)
845b9da1bb3SMatthew G. Knepley . -dm_plex_orient <bool>                             - `PETSC_TRUE` turns on topological orientation (flipping edges and faces)
8469318fe57SMatthew G. Knepley . -dm_plex_scale <sc>                                - Scale factor for mesh coordinates
847be664eb1SMatthew G. Knepley . -dm_coord_remap <bool>                             - Map coordinates using a function
848*ac9d17c7SMatthew G. Knepley . -dm_plex_coordinate_dim <dim>                      - Change the coordinate dimension of a mesh (usually given with cdm_ prefix)
849be664eb1SMatthew G. Knepley . -dm_coord_map <mapname>                            - Select a builtin coordinate map
850be664eb1SMatthew G. Knepley . -dm_coord_map_params <p0,p1,p2,...>                - Set coordinate mapping parameters
8519318fe57SMatthew G. Knepley . -dm_plex_box_faces <m,n,p>                         - Number of faces along each dimension
8529318fe57SMatthew G. Knepley . -dm_plex_box_lower <x,y,z>                         - Specify lower-left-bottom coordinates for the box
8539318fe57SMatthew G. Knepley . -dm_plex_box_upper <x,y,z>                         - Specify upper-right-top coordinates for the box
854bb7acecfSBarry Smith . -dm_plex_box_bd <bx,by,bz>                         - Specify the `DMBoundaryType` for each direction
8559318fe57SMatthew G. Knepley . -dm_plex_sphere_radius <r>                         - The sphere radius
8569318fe57SMatthew G. Knepley . -dm_plex_ball_radius <r>                           - Radius of the ball
8579318fe57SMatthew G. Knepley . -dm_plex_cylinder_bd <bz>                          - Boundary type in the z direction
8589318fe57SMatthew G. Knepley . -dm_plex_cylinder_num_wedges <n>                   - Number of wedges around the cylinder
859bdf63967SMatthew G. Knepley . -dm_plex_reorder <order>                           - Reorder the mesh using the specified algorithm
8609318fe57SMatthew G. Knepley . -dm_refine_pre <n>                                 - The number of refinements before distribution
8619318fe57SMatthew G. Knepley . -dm_refine_uniform_pre <bool>                      - Flag for uniform refinement before distribution
8629318fe57SMatthew G. Knepley . -dm_refine_volume_limit_pre <v>                    - The maximum cell volume after refinement before distribution
8639318fe57SMatthew G. Knepley . -dm_refine <n>                                     - The number of refinements after distribution
864bdf63967SMatthew G. Knepley . -dm_extrude <l>                                    - Activate extrusion and specify the number of layers to extrude
865d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thickness <t>           - The total thickness of extruded layers
866d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_use_tensor <bool>       - Use tensor cells when extruding
867d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_symmetric <bool>        - Extrude layers symmetrically about the surface
868d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_normal <n0,...,nd>      - Specify the extrusion direction
869d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thicknesses <t0,...,tl> - Specify thickness of each layer
870909dfd52SMatthew G. Knepley . -dm_plex_create_fv_ghost_cells                     - Flag to create finite volume ghost cells on the boundary
871909dfd52SMatthew G. Knepley . -dm_plex_fv_ghost_cells_label <name>               - Label name for ghost cells boundary
8729318fe57SMatthew G. Knepley . -dm_distribute <bool>                              - Flag to redistribute a mesh among processes
8739318fe57SMatthew G. Knepley . -dm_distribute_overlap <n>                         - The size of the overlap halo
8749318fe57SMatthew G. Knepley . -dm_plex_adj_cone <bool>                           - Set adjacency direction
87520f4b53cSBarry Smith . -dm_plex_adj_closure <bool>                        - Set adjacency size
876d2b2dc1eSMatthew G. Knepley . -dm_plex_use_ceed <bool>                           - Use LibCEED as the FEM backend
87720f4b53cSBarry Smith . -dm_plex_check_symmetry                            - Check that the adjacency information in the mesh is symmetric - `DMPlexCheckSymmetry()`
878bb7acecfSBarry Smith . -dm_plex_check_skeleton                            - Check that each cell has the correct number of vertices (only for homogeneous simplex or tensor meshes) - `DMPlexCheckSkeleton()`
879bb7acecfSBarry Smith . -dm_plex_check_faces                               - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type - `DMPlexCheckFaces()`
880bb7acecfSBarry Smith . -dm_plex_check_geometry                            - Check that cells have positive volume - `DMPlexCheckGeometry()`
881bb7acecfSBarry Smith . -dm_plex_check_pointsf                             - Check some necessary conditions for `PointSF` - `DMPlexCheckPointSF()`
882bb7acecfSBarry Smith . -dm_plex_check_interface_cones                     - Check points on inter-partition interfaces have conforming order of cone points - `DMPlexCheckInterfaceCones()`
883384a6580SVaclav Hapla - -dm_plex_check_all                                 - Perform all the checks above
884d7bf68aeSBarry Smith 
88595eb5ee5SVaclav Hapla   Level: intermediate
88695eb5ee5SVaclav Hapla 
8878e704042SBarry Smith   Note:
8888e704042SBarry Smith   For some `DMType` such as `DMDA` this cannot be called after `DMSetUp()` has been called.
8898e704042SBarry Smith 
8901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
891bb7acecfSBarry Smith          `DMPlexCheckSymmetry()`, `DMPlexCheckSkeleton()`, `DMPlexCheckFaces()`, `DMPlexCheckGeometry()`, `DMPlexCheckPointSF()`, `DMPlexCheckInterfaceCones()`,
8928e704042SBarry Smith          `DMSetOptionsPrefix()`, `DMType`, `DMPLEX`, `DMDA`, `DMSetUp()`
893d7bf68aeSBarry Smith @*/
894d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFromOptions(DM dm)
895d71ae5a4SJacob Faibussowitsch {
8967781c08eSBarry Smith   char      typeName[256];
897ca266f36SBarry Smith   PetscBool flg;
898d7bf68aeSBarry Smith 
899d7bf68aeSBarry Smith   PetscFunctionBegin;
900171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
90149be4549SMatthew G. Knepley   dm->setfromoptionscalled = PETSC_TRUE;
9029566063dSJacob Faibussowitsch   if (dm->sf) PetscCall(PetscSFSetFromOptions(dm->sf));
9039566063dSJacob Faibussowitsch   if (dm->sectionSF) PetscCall(PetscSFSetFromOptions(dm->sectionSF));
904dd4c3f67SMatthew G. Knepley   if (dm->coordinates[0].dm) PetscCall(DMSetFromOptions(dm->coordinates[0].dm));
905d0609cedSBarry Smith   PetscObjectOptionsBegin((PetscObject)dm);
9069566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-dm_preallocate_only", "only preallocate matrix, but do not set column indices", "DMSetMatrixPreallocateOnly", dm->prealloc_only, &dm->prealloc_only, NULL));
9079566063dSJacob Faibussowitsch   PetscCall(PetscOptionsFList("-dm_vec_type", "Vector type used for created vectors", "DMSetVecType", VecList, dm->vectype, typeName, 256, &flg));
9081baa6e33SBarry Smith   if (flg) PetscCall(DMSetVecType(dm, typeName));
9099566063dSJacob Faibussowitsch   PetscCall(PetscOptionsFList("-dm_mat_type", "Matrix type used for created matrices", "DMSetMatType", MatList, dm->mattype ? dm->mattype : typeName, typeName, sizeof(typeName), &flg));
9101baa6e33SBarry Smith   if (flg) PetscCall(DMSetMatType(dm, typeName));
911863027abSJed Brown   PetscCall(PetscOptionsEnum("-dm_blocking_type", "Topological point or field node blocking", "DMSetBlockingType", DMBlockingTypes, (PetscEnum)dm->blocking_type, (PetscEnum *)&dm->blocking_type, NULL));
9129566063dSJacob Faibussowitsch   PetscCall(PetscOptionsEnum("-dm_is_coloring_type", "Global or local coloring of Jacobian", "DMSetISColoringType", ISColoringTypes, (PetscEnum)dm->coloringtype, (PetscEnum *)&dm->coloringtype, NULL));
9139566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt("-dm_bind_below", "Set the size threshold (in entries) below which the Vec is bound to the CPU", "VecBindToCPU", dm->bind_below, &dm->bind_below, &flg));
914eb9d3e4dSMatthew G. Knepley   PetscCall(PetscOptionsBool("-dm_ignore_perm_output", "Ignore the local section permutation on output", "DMGetOutputDM", dm->ignorePermOutput, &dm->ignorePermOutput, NULL));
915dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, setfromoptions, PetscOptionsObject);
916f9ba7244SBarry Smith   /* process any options handlers added with PetscObjectAddOptionsHandler() */
917dbbe0bcdSBarry Smith   PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)dm, PetscOptionsObject));
918d0609cedSBarry Smith   PetscOptionsEnd();
9193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
920d7bf68aeSBarry Smith }
921d7bf68aeSBarry Smith 
922ffeef943SBarry Smith /*@
923bb7acecfSBarry Smith   DMViewFromOptions - View a `DM` in a particular way based on a request in the options database
924fe2efc57SMark 
92520f4b53cSBarry Smith   Collective
926fe2efc57SMark 
927fe2efc57SMark   Input Parameters:
928bb7acecfSBarry Smith + dm   - the `DM` object
92920f4b53cSBarry Smith . obj  - optional object that provides the prefix for the options database (if `NULL` then the prefix in obj is used)
93060225df5SJacob Faibussowitsch - name - option string that is used to activate viewing
931fe2efc57SMark 
932fe2efc57SMark   Level: intermediate
933bb7acecfSBarry Smith 
934bb7acecfSBarry Smith   Note:
935bb7acecfSBarry Smith   See `PetscObjectViewFromOptions()` for a list of values that can be provided in the options database to determine how the `DM` is viewed
936bb7acecfSBarry Smith 
93760225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `PetscObjectViewFromOptions()`, `DMCreate()`
938fe2efc57SMark @*/
939d71ae5a4SJacob Faibussowitsch PetscErrorCode DMViewFromOptions(DM dm, PetscObject obj, const char name[])
940d71ae5a4SJacob Faibussowitsch {
941fe2efc57SMark   PetscFunctionBegin;
942fe2efc57SMark   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9439566063dSJacob Faibussowitsch   PetscCall(PetscObjectViewFromOptions((PetscObject)dm, obj, name));
9443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
945fe2efc57SMark }
946fe2efc57SMark 
947ffeef943SBarry Smith /*@
948bb7acecfSBarry Smith   DMView - Views a `DM`. Depending on the `PetscViewer` and its `PetscViewerFormat` it may print some ASCII information about the `DM` to the screen or a file or
949bb7acecfSBarry Smith   save the `DM` in a binary file to be loaded later or create a visualization of the `DM`
95047c6ae99SBarry Smith 
95120f4b53cSBarry Smith   Collective
95247c6ae99SBarry Smith 
953d8d19677SJose E. Roman   Input Parameters:
954bb7acecfSBarry Smith + dm - the `DM` object to view
95547c6ae99SBarry Smith - v  - the viewer
95647c6ae99SBarry Smith 
95720f4b53cSBarry Smith   Level: beginner
95820f4b53cSBarry Smith 
95949c89c76SBlaise Bourdin   Notes:
96049c89c76SBlaise Bourdin 
96149c89c76SBlaise Bourdin   `PetscViewer` = `PETSCVIEWERHDF5` i.e. HDF5 format can be used with `PETSC_VIEWER_HDF5_PETSC` as the `PetscViewerFormat` to save multiple `DMPLEX`
962bb7acecfSBarry Smith   meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()`
963bb7acecfSBarry Smith   before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object.
964cd7e8a5eSksagiyam 
96549c89c76SBlaise Bourdin   `PetscViewer` = `PETSCVIEWEREXODUSII` i.e. ExodusII format assumes that element blocks (mapped to "Cell sets" labels)
96649c89c76SBlaise Bourdin   consists of sequentially numbered cells.
96749c89c76SBlaise Bourdin 
96849c89c76SBlaise Bourdin   If `dm` has been distributed, only the part of the `DM` on MPI rank 0 (including "ghost" cells and vertices) will be written.
96949c89c76SBlaise Bourdin 
97049c89c76SBlaise Bourdin   Only TRI, TET, QUAD, and HEX cells are supported.
97149c89c76SBlaise Bourdin 
97249c89c76SBlaise Bourdin   `DMPLEX` only represents geometry while most post-processing software expect that a mesh also provides information on the discretization space. This function assumes that the file represents Lagrange finite elements of order 1 or 2.
97349c89c76SBlaise Bourdin   The order of the mesh shall be set using `PetscViewerExodusIISetOrder()`
97449c89c76SBlaise Bourdin 
975d7c1f440SPierre Jolivet   Variable names can be set and queried using `PetscViewerExodusII[Set/Get][Nodal/Zonal]VariableNames[s]`.
97649c89c76SBlaise Bourdin 
9771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewer`, `PetscViewerFormat`, `PetscViewerSetFormat()`, `DMDestroy()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMLoad()`, `PetscObjectSetName()`
97847c6ae99SBarry Smith @*/
979d71ae5a4SJacob Faibussowitsch PetscErrorCode DMView(DM dm, PetscViewer v)
980d71ae5a4SJacob Faibussowitsch {
98132c0f0efSBarry Smith   PetscBool         isbinary;
98276a8abe0SBarry Smith   PetscMPIInt       size;
98376a8abe0SBarry Smith   PetscViewerFormat format;
98447c6ae99SBarry Smith 
98547c6ae99SBarry Smith   PetscFunctionBegin;
986171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
98748a46eb9SPierre Jolivet   if (!v) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &v));
988b1b135c8SBarry Smith   PetscValidHeaderSpecific(v, PETSC_VIEWER_CLASSID, 2);
98974903a4fSStefano Zampini   /* Ideally, we would like to have this test on.
99074903a4fSStefano Zampini      However, it currently breaks socket viz via GLVis.
99174903a4fSStefano Zampini      During DMView(parallel_mesh,glvis_viewer), each
99274903a4fSStefano Zampini      process opens a sequential ASCII socket to visualize
99374903a4fSStefano Zampini      the local mesh, and PetscObjectView(dm,local_socket)
99474903a4fSStefano Zampini      is internally called inside VecView_GLVis, incurring
99574903a4fSStefano Zampini      in an error here */
99674903a4fSStefano Zampini   /* PetscCheckSameComm(dm,1,v,2); */
9979566063dSJacob Faibussowitsch   PetscCall(PetscViewerCheckWritable(v));
998b1b135c8SBarry Smith 
99942d0c57aSJames Wright   PetscCall(PetscLogEventBegin(DM_View, v, 0, 0, 0));
10009566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(v, &format));
10019566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
10023ba16761SJacob Faibussowitsch   if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(PETSC_SUCCESS);
10039566063dSJacob Faibussowitsch   PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)dm, v));
10049566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)v, PETSCVIEWERBINARY, &isbinary));
100532c0f0efSBarry Smith   if (isbinary) {
100655849f57SBarry Smith     PetscInt classid = DM_FILE_CLASSID;
100732c0f0efSBarry Smith     char     type[256];
100832c0f0efSBarry Smith 
10099566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryWrite(v, &classid, 1, PETSC_INT));
1010c6a7a370SJeremy L Thompson     PetscCall(PetscStrncpy(type, ((PetscObject)dm)->type_name, sizeof(type)));
10119566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryWrite(v, type, 256, PETSC_CHAR));
101232c0f0efSBarry Smith   }
1013dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, view, v);
101442d0c57aSJames Wright   PetscCall(PetscLogEventEnd(DM_View, v, 0, 0, 0));
10153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
101647c6ae99SBarry Smith }
101747c6ae99SBarry Smith 
101847c6ae99SBarry Smith /*@
1019bb7acecfSBarry Smith   DMCreateGlobalVector - Creates a global vector from a `DM` object. A global vector is a parallel vector that has no duplicate values shared between MPI ranks,
1020bb7acecfSBarry Smith   that is it has no ghost locations.
102147c6ae99SBarry Smith 
102220f4b53cSBarry Smith   Collective
102347c6ae99SBarry Smith 
102447c6ae99SBarry Smith   Input Parameter:
1025bb7acecfSBarry Smith . dm - the `DM` object
102647c6ae99SBarry Smith 
102747c6ae99SBarry Smith   Output Parameter:
102847c6ae99SBarry Smith . vec - the global vector
102947c6ae99SBarry Smith 
1030073dac72SJed Brown   Level: beginner
103147c6ae99SBarry Smith 
10321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
1033bb7acecfSBarry Smith          `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()`
103447c6ae99SBarry Smith @*/
1035d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateGlobalVector(DM dm, Vec *vec)
1036d71ae5a4SJacob Faibussowitsch {
103747c6ae99SBarry Smith   PetscFunctionBegin;
1038171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10394f572ea9SToby Isaac   PetscAssertPointer(vec, 2);
1040dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createglobalvector, vec);
104176bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1042c6b011d8SStefano Zampini     DM vdm;
1043c6b011d8SStefano Zampini 
10449566063dSJacob Faibussowitsch     PetscCall(VecGetDM(*vec, &vdm));
10457a8be351SBarry Smith     PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name);
1046c6b011d8SStefano Zampini   }
10473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
104847c6ae99SBarry Smith }
104947c6ae99SBarry Smith 
105047c6ae99SBarry Smith /*@
1051bb7acecfSBarry Smith   DMCreateLocalVector - Creates a local vector from a `DM` object.
105247c6ae99SBarry Smith 
105347c6ae99SBarry Smith   Not Collective
105447c6ae99SBarry Smith 
105547c6ae99SBarry Smith   Input Parameter:
1056bb7acecfSBarry Smith . dm - the `DM` object
105747c6ae99SBarry Smith 
105847c6ae99SBarry Smith   Output Parameter:
105947c6ae99SBarry Smith . vec - the local vector
106047c6ae99SBarry Smith 
1061073dac72SJed Brown   Level: beginner
106247c6ae99SBarry Smith 
106320f4b53cSBarry Smith   Note:
1064bb7acecfSBarry Smith   A local vector usually has ghost locations that contain values that are owned by different MPI ranks. A global vector has no ghost locations.
1065bb7acecfSBarry Smith 
10661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
1067bb7acecfSBarry Smith          `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()`
106847c6ae99SBarry Smith @*/
1069d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLocalVector(DM dm, Vec *vec)
1070d71ae5a4SJacob Faibussowitsch {
107147c6ae99SBarry Smith   PetscFunctionBegin;
1072171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10734f572ea9SToby Isaac   PetscAssertPointer(vec, 2);
1074dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createlocalvector, vec);
107576bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1076c6b011d8SStefano Zampini     DM vdm;
1077c6b011d8SStefano Zampini 
10789566063dSJacob Faibussowitsch     PetscCall(VecGetDM(*vec, &vdm));
10797a8be351SBarry Smith     PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_LIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name);
1080c6b011d8SStefano Zampini   }
10813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
108247c6ae99SBarry Smith }
108347c6ae99SBarry Smith 
10841411c6eeSJed Brown /*@
1085bb7acecfSBarry Smith   DMGetLocalToGlobalMapping - Accesses the local-to-global mapping in a `DM`.
10861411c6eeSJed Brown 
108720f4b53cSBarry Smith   Collective
10881411c6eeSJed Brown 
10891411c6eeSJed Brown   Input Parameter:
1090bb7acecfSBarry Smith . dm - the `DM` that provides the mapping
10911411c6eeSJed Brown 
10921411c6eeSJed Brown   Output Parameter:
10931411c6eeSJed Brown . ltog - the mapping
10941411c6eeSJed Brown 
1095bb7acecfSBarry Smith   Level: advanced
10961411c6eeSJed Brown 
10971411c6eeSJed Brown   Notes:
1098bb7acecfSBarry Smith   The global to local mapping allows one to set values into the global vector or matrix using `VecSetValuesLocal()` and `MatSetValuesLocal()`
10991411c6eeSJed Brown 
1100bb7acecfSBarry Smith   Vectors obtained with  `DMCreateGlobalVector()` and matrices obtained with `DMCreateMatrix()` already contain the global mapping so you do
1101bb7acecfSBarry Smith   need to use this function with those objects.
1102bb7acecfSBarry Smith 
1103bb7acecfSBarry Smith   This mapping can then be used by `VecSetLocalToGlobalMapping()` or `MatSetLocalToGlobalMapping()`.
1104bb7acecfSBarry Smith 
110560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `VecSetLocalToGlobalMapping()`, `MatSetLocalToGlobalMapping()`,
1106bb7acecfSBarry Smith           `DMCreateMatrix()`
11071411c6eeSJed Brown @*/
1108d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalToGlobalMapping(DM dm, ISLocalToGlobalMapping *ltog)
1109d71ae5a4SJacob Faibussowitsch {
11100be3e97aSMatthew G. Knepley   PetscInt bs = -1, bsLocal[2], bsMinMax[2];
11111411c6eeSJed Brown 
11121411c6eeSJed Brown   PetscFunctionBegin;
11131411c6eeSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11144f572ea9SToby Isaac   PetscAssertPointer(ltog, 2);
11151411c6eeSJed Brown   if (!dm->ltogmap) {
111637d0c07bSMatthew G Knepley     PetscSection section, sectionGlobal;
111737d0c07bSMatthew G Knepley 
11189566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
111937d0c07bSMatthew G Knepley     if (section) {
1120a974ec88SMatthew G. Knepley       const PetscInt *cdofs;
112137d0c07bSMatthew G Knepley       PetscInt       *ltog;
1122ccf3bd66SMatthew G. Knepley       PetscInt        pStart, pEnd, n, p, k, l;
112337d0c07bSMatthew G Knepley 
11249566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalSection(dm, &sectionGlobal));
11259566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
11269566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetStorageSize(section, &n));
11279566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &ltog)); /* We want the local+overlap size */
112837d0c07bSMatthew G Knepley       for (p = pStart, l = 0; p < pEnd; ++p) {
1129e6befd46SJed Brown         PetscInt bdof, cdof, dof, off, c, cind;
113037d0c07bSMatthew G Knepley 
113137d0c07bSMatthew G Knepley         /* Should probably use constrained dofs */
11329566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(section, p, &dof));
11339566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintDof(section, p, &cdof));
11349566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintIndices(section, p, &cdofs));
11359566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(sectionGlobal, p, &off));
11361a7dc684SMatthew G. Knepley         /* If you have dofs, and constraints, and they are unequal, we set the blocksize to 1 */
11371a7dc684SMatthew G. Knepley         bdof = cdof && (dof - cdof) ? 1 : dof;
1138ad540459SPierre Jolivet         if (dof) bs = bs < 0 ? bdof : PetscGCD(bs, bdof);
11395227eafbSStefano Zampini 
1140e6befd46SJed Brown         for (c = 0, cind = 0; c < dof; ++c, ++l) {
11415227eafbSStefano Zampini           if (cind < cdof && c == cdofs[cind]) {
1142e6befd46SJed Brown             ltog[l] = off < 0 ? off - c : -(off + c + 1);
1143e6befd46SJed Brown             cind++;
1144e6befd46SJed Brown           } else {
11455227eafbSStefano Zampini             ltog[l] = (off < 0 ? -(off + 1) : off) + c - cind;
1146e6befd46SJed Brown           }
114737d0c07bSMatthew G Knepley         }
114837d0c07bSMatthew G Knepley       }
1149bff27382SMatthew G. Knepley       /* Must have same blocksize on all procs (some might have no points) */
11501690c2aeSBarry Smith       bsLocal[0] = bs < 0 ? PETSC_INT_MAX : bs;
11519371c9d4SSatish Balay       bsLocal[1] = bs;
11529566063dSJacob Faibussowitsch       PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)dm), bsLocal, bsMinMax));
11539371c9d4SSatish Balay       if (bsMinMax[0] != bsMinMax[1]) {
11549371c9d4SSatish Balay         bs = 1;
11559371c9d4SSatish Balay       } else {
11569371c9d4SSatish Balay         bs = bsMinMax[0];
11579371c9d4SSatish Balay       }
11587591dbb2SMatthew G. Knepley       bs = bs < 0 ? 1 : bs;
11597591dbb2SMatthew G. Knepley       /* Must reduce indices by blocksize */
1160ccf3bd66SMatthew G. Knepley       if (bs > 1) {
1161ca469d19SJed Brown         for (l = 0, k = 0; l < n; l += bs, ++k) {
1162ca469d19SJed Brown           // Integer division of negative values truncates toward zero(!), not toward negative infinity
1163ca469d19SJed Brown           ltog[k] = ltog[l] >= 0 ? ltog[l] / bs : -(-(ltog[l] + 1) / bs + 1);
1164ca469d19SJed Brown         }
1165ccf3bd66SMatthew G. Knepley         n /= bs;
1166ccf3bd66SMatthew G. Knepley       }
11679566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm), bs, n, ltog, PETSC_OWN_POINTER, &dm->ltogmap));
1168dbbe0bcdSBarry Smith     } else PetscUseTypeMethod(dm, getlocaltoglobalmapping);
116937d0c07bSMatthew G Knepley   }
11701411c6eeSJed Brown   *ltog = dm->ltogmap;
11713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11721411c6eeSJed Brown }
11731411c6eeSJed Brown 
11741411c6eeSJed Brown /*@
1175bb7acecfSBarry Smith   DMGetBlockSize - Gets the inherent block size associated with a `DM`
11761411c6eeSJed Brown 
11771411c6eeSJed Brown   Not Collective
11781411c6eeSJed Brown 
11791411c6eeSJed Brown   Input Parameter:
1180bb7acecfSBarry Smith . dm - the `DM` with block structure
11811411c6eeSJed Brown 
11821411c6eeSJed Brown   Output Parameter:
11831411c6eeSJed Brown . bs - the block size, 1 implies no exploitable block structure
11841411c6eeSJed Brown 
11851411c6eeSJed Brown   Level: intermediate
11861411c6eeSJed Brown 
118773ff1848SBarry Smith   Notes:
1188bb7acecfSBarry Smith   This might be the number of degrees of freedom at each grid point for a structured grid.
1189bb7acecfSBarry Smith 
1190bb7acecfSBarry Smith   Complex `DM` that represent multiphysics or staggered grids or mixed-methods do not generally have a single inherent block size, but
1191bb7acecfSBarry Smith   rather different locations in the vectors may have a different block size.
1192bb7acecfSBarry Smith 
11931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISCreateBlock()`, `VecSetBlockSize()`, `MatSetBlockSize()`, `DMGetLocalToGlobalMapping()`
11941411c6eeSJed Brown @*/
1195d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBlockSize(DM dm, PetscInt *bs)
1196d71ae5a4SJacob Faibussowitsch {
11971411c6eeSJed Brown   PetscFunctionBegin;
11981411c6eeSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11994f572ea9SToby Isaac   PetscAssertPointer(bs, 2);
12007a8be351SBarry Smith   PetscCheck(dm->bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM does not have enough information to provide a block size yet");
12011411c6eeSJed Brown   *bs = dm->bs;
12023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12031411c6eeSJed Brown }
12041411c6eeSJed Brown 
1205ffeef943SBarry Smith /*@
1206bb7acecfSBarry Smith   DMCreateInterpolation - Gets the interpolation matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by
1207bb7acecfSBarry Smith   `DMCreateGlobalVector()` on the coarse `DM` to similar vectors on the fine grid `DM`.
120847c6ae99SBarry Smith 
120920f4b53cSBarry Smith   Collective
121047c6ae99SBarry Smith 
1211d8d19677SJose E. Roman   Input Parameters:
1212bb7acecfSBarry Smith + dmc - the `DM` object
1213bb7acecfSBarry Smith - dmf - the second, finer `DM` object
121447c6ae99SBarry Smith 
1215d8d19677SJose E. Roman   Output Parameters:
121647c6ae99SBarry Smith + mat - the interpolation
1217b6971eaeSBarry Smith - vec - the scaling (optional, pass `NULL` if not needed), see `DMCreateInterpolationScale()`
121847c6ae99SBarry Smith 
121947c6ae99SBarry Smith   Level: developer
122047c6ae99SBarry Smith 
122195452b02SPatrick Sanan   Notes:
1222bb7acecfSBarry Smith   For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by
1223bb7acecfSBarry Smith   DMCoarsen(). The coordinates set into the `DMDA` are completely ignored in computing the interpolation.
1224d52bd9f3SBarry Smith 
1225bb7acecfSBarry Smith   For `DMDA` objects you can use this interpolation (more precisely the interpolation from the `DMGetCoordinateDM()`) to interpolate the mesh coordinate
1226bb7acecfSBarry Smith   vectors EXCEPT in the periodic case where it does not make sense since the coordinate vectors are not periodic.
122785afcc9aSBarry Smith 
12281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolationScale()`
122947c6ae99SBarry Smith @*/
1230d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolation(DM dmc, DM dmf, Mat *mat, Vec *vec)
1231d71ae5a4SJacob Faibussowitsch {
123247c6ae99SBarry Smith   PetscFunctionBegin;
1233a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
1234a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
12354f572ea9SToby Isaac   PetscAssertPointer(mat, 3);
12369566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateInterpolation, dmc, dmf, 0, 0));
1237dbbe0bcdSBarry Smith   PetscUseTypeMethod(dmc, createinterpolation, dmf, mat, vec);
12389566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateInterpolation, dmc, dmf, 0, 0));
12393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
124047c6ae99SBarry Smith }
124147c6ae99SBarry Smith 
12423ad4599aSBarry Smith /*@
1243a4e35b19SJacob Faibussowitsch   DMCreateInterpolationScale - Forms L = 1/(R*1) where 1 is the vector of all ones, and R is
1244a4e35b19SJacob Faibussowitsch   the transpose of the interpolation between the `DM`.
12452ed6491fSPatrick Sanan 
12462ed6491fSPatrick Sanan   Input Parameters:
1247bb7acecfSBarry Smith + dac - `DM` that defines a coarse mesh
1248bb7acecfSBarry Smith . daf - `DM` that defines a fine mesh
12492ed6491fSPatrick Sanan - mat - the restriction (or interpolation operator) from fine to coarse
12502ed6491fSPatrick Sanan 
12512ed6491fSPatrick Sanan   Output Parameter:
12522ed6491fSPatrick Sanan . scale - the scaled vector
12532ed6491fSPatrick Sanan 
1254bb7acecfSBarry Smith   Level: advanced
12552ed6491fSPatrick Sanan 
125673ff1848SBarry Smith   Note:
1257a4e35b19SJacob Faibussowitsch   xcoarse = diag(L)*R*xfine preserves scale and is thus suitable for state (versus residual)
1258a4e35b19SJacob Faibussowitsch   restriction. In other words xcoarse is the coarse representation of xfine.
1259a4e35b19SJacob Faibussowitsch 
126073ff1848SBarry Smith   Developer Note:
1261bb7acecfSBarry Smith   If the fine-scale `DMDA` has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()`
1262e9c74fd6SRichard Tran Mills   on the restriction/interpolation operator to set the bindingpropagates flag to true.
1263e9c74fd6SRichard Tran Mills 
126460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatRestrict()`, `MatInterpolate()`, `DMCreateInterpolation()`, `DMCreateRestriction()`, `DMCreateGlobalVector()`
12652ed6491fSPatrick Sanan @*/
1266d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolationScale(DM dac, DM daf, Mat mat, Vec *scale)
1267d71ae5a4SJacob Faibussowitsch {
12682ed6491fSPatrick Sanan   Vec         fine;
12692ed6491fSPatrick Sanan   PetscScalar one = 1.0;
12709704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA)
1271e9c74fd6SRichard Tran Mills   PetscBool bindingpropagates, isbound;
12729704db99SRichard Tran Mills #endif
12732ed6491fSPatrick Sanan 
12742ed6491fSPatrick Sanan   PetscFunctionBegin;
12759566063dSJacob Faibussowitsch   PetscCall(DMCreateGlobalVector(daf, &fine));
12769566063dSJacob Faibussowitsch   PetscCall(DMCreateGlobalVector(dac, scale));
12779566063dSJacob Faibussowitsch   PetscCall(VecSet(fine, one));
12789704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA)
12799704db99SRichard Tran Mills   /* If the 'fine' Vec is bound to the CPU, it makes sense to bind 'mat' as well.
12809704db99SRichard Tran Mills    * Note that we only do this for the CUDA case, right now, but if we add support for MatMultTranspose() via ViennaCL,
12819704db99SRichard Tran Mills    * we'll need to do it for that case, too.*/
12829566063dSJacob Faibussowitsch   PetscCall(VecGetBindingPropagates(fine, &bindingpropagates));
1283e9c74fd6SRichard Tran Mills   if (bindingpropagates) {
12849566063dSJacob Faibussowitsch     PetscCall(MatSetBindingPropagates(mat, PETSC_TRUE));
12859566063dSJacob Faibussowitsch     PetscCall(VecBoundToCPU(fine, &isbound));
12869566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(mat, isbound));
128783aa49f4SRichard Tran Mills   }
12889704db99SRichard Tran Mills #endif
12899566063dSJacob Faibussowitsch   PetscCall(MatRestrict(mat, fine, *scale));
12909566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&fine));
12919566063dSJacob Faibussowitsch   PetscCall(VecReciprocal(*scale));
12923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12932ed6491fSPatrick Sanan }
12942ed6491fSPatrick Sanan 
12952ed6491fSPatrick Sanan /*@
1296bb7acecfSBarry Smith   DMCreateRestriction - Gets restriction matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by
1297bb7acecfSBarry Smith   `DMCreateGlobalVector()` on the fine `DM` to similar vectors on the coarse grid `DM`.
12983ad4599aSBarry Smith 
129920f4b53cSBarry Smith   Collective
13003ad4599aSBarry Smith 
1301d8d19677SJose E. Roman   Input Parameters:
1302bb7acecfSBarry Smith + dmc - the `DM` object
1303bb7acecfSBarry Smith - dmf - the second, finer `DM` object
13043ad4599aSBarry Smith 
13053ad4599aSBarry Smith   Output Parameter:
13063ad4599aSBarry Smith . mat - the restriction
13073ad4599aSBarry Smith 
13083ad4599aSBarry Smith   Level: developer
13093ad4599aSBarry Smith 
1310bb7acecfSBarry Smith   Note:
1311bb7acecfSBarry Smith   This only works for `DMSTAG`. For many situations either the transpose of the operator obtained with `DMCreateInterpolation()` or that
1312bb7acecfSBarry Smith   matrix multiplied by the vector obtained with `DMCreateInterpolationScale()` provides the desired object.
13133ad4599aSBarry Smith 
13141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRestrict()`, `DMInterpolate()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateInterpolation()`
13153ad4599aSBarry Smith @*/
1316d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateRestriction(DM dmc, DM dmf, Mat *mat)
1317d71ae5a4SJacob Faibussowitsch {
13183ad4599aSBarry Smith   PetscFunctionBegin;
1319a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
1320a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
13214f572ea9SToby Isaac   PetscAssertPointer(mat, 3);
13229566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateRestriction, dmc, dmf, 0, 0));
1323dbbe0bcdSBarry Smith   PetscUseTypeMethod(dmc, createrestriction, dmf, mat);
13249566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateRestriction, dmc, dmf, 0, 0));
13253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13263ad4599aSBarry Smith }
13273ad4599aSBarry Smith 
132847c6ae99SBarry Smith /*@
1329a4e35b19SJacob Faibussowitsch   DMCreateInjection - Gets injection matrix between two `DM` objects.
133047c6ae99SBarry Smith 
133120f4b53cSBarry Smith   Collective
133247c6ae99SBarry Smith 
1333d8d19677SJose E. Roman   Input Parameters:
1334bb7acecfSBarry Smith + dac - the `DM` object
1335bb7acecfSBarry Smith - daf - the second, finer `DM` object
133647c6ae99SBarry Smith 
133747c6ae99SBarry Smith   Output Parameter:
13386dbf9973SLawrence Mitchell . mat - the injection
133947c6ae99SBarry Smith 
134047c6ae99SBarry Smith   Level: developer
134147c6ae99SBarry Smith 
1342a4e35b19SJacob Faibussowitsch   Notes:
1343a4e35b19SJacob Faibussowitsch   This is an operator that applied to a vector obtained with `DMCreateGlobalVector()` on the
1344a4e35b19SJacob Faibussowitsch   fine grid maps the values to a vector on the vector on the coarse `DM` by simply selecting
1345a4e35b19SJacob Faibussowitsch   the values on the coarse grid points. This compares to the operator obtained by
1346a4e35b19SJacob Faibussowitsch   `DMCreateRestriction()` or the transpose of the operator obtained by
1347a4e35b19SJacob Faibussowitsch   `DMCreateInterpolation()` that uses a "local weighted average" of the values around the
1348a4e35b19SJacob Faibussowitsch   coarse grid point as the coarse grid value.
1349a4e35b19SJacob Faibussowitsch 
1350bb7acecfSBarry Smith   For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by
1351bb7acecfSBarry Smith   `DMCoarsen()`. The coordinates set into the `DMDA` are completely ignored in computing the injection.
135285afcc9aSBarry Smith 
13531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateInterpolation()`,
1354bb7acecfSBarry Smith           `DMCreateRestriction()`, `MatRestrict()`, `MatInterpolate()`
135547c6ae99SBarry Smith @*/
1356d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInjection(DM dac, DM daf, Mat *mat)
1357d71ae5a4SJacob Faibussowitsch {
135847c6ae99SBarry Smith   PetscFunctionBegin;
1359a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dac, DM_CLASSID, 1);
1360a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(daf, DM_CLASSID, 2);
13614f572ea9SToby Isaac   PetscAssertPointer(mat, 3);
13629566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateInjection, dac, daf, 0, 0));
1363dbbe0bcdSBarry Smith   PetscUseTypeMethod(dac, createinjection, daf, mat);
13649566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateInjection, dac, daf, 0, 0));
13653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
136647c6ae99SBarry Smith }
136747c6ae99SBarry Smith 
1368b412c318SBarry Smith /*@
1369bb7acecfSBarry Smith   DMCreateMassMatrix - Gets the mass matrix between two `DM` objects, M_ij = \int \phi_i \psi_j where the \phi are Galerkin basis functions for a
1370bb7acecfSBarry Smith   a Galerkin finite element model on the `DM`
1371bd041c0cSMatthew G. Knepley 
137220f4b53cSBarry Smith   Collective
1373bd041c0cSMatthew G. Knepley 
1374d8d19677SJose E. Roman   Input Parameters:
1375bb7acecfSBarry Smith + dmc - the target `DM` object
13768c1c0954SStefano Zampini - dmf - the source `DM` object, can be `NULL`
1377bd041c0cSMatthew G. Knepley 
1378bd041c0cSMatthew G. Knepley   Output Parameter:
1379b4937a87SMatthew G. Knepley . mat - the mass matrix
1380bd041c0cSMatthew G. Knepley 
1381bd041c0cSMatthew G. Knepley   Level: developer
1382bd041c0cSMatthew G. Knepley 
1383bb7acecfSBarry Smith   Notes:
1384bb7acecfSBarry Smith   For `DMPLEX` the finite element model for the `DM` must have been already provided.
1385bb7acecfSBarry Smith 
13868c1c0954SStefano Zampini   if `dmc` is `dmf` or `NULL`, then x^t M x is an approximation to the L2 norm of the vector x which is obtained by `DMCreateGlobalVector()`
1387bb7acecfSBarry Smith 
138842747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrixLumped()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()`
1389bd041c0cSMatthew G. Knepley @*/
1390d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrix(DM dmc, DM dmf, Mat *mat)
1391d71ae5a4SJacob Faibussowitsch {
1392bd041c0cSMatthew G. Knepley   PetscFunctionBegin;
1393b4937a87SMatthew G. Knepley   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
13948c1c0954SStefano Zampini   if (!dmf) dmf = dmc;
1395b4937a87SMatthew G. Knepley   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
13964f572ea9SToby Isaac   PetscAssertPointer(mat, 3);
13978c1c0954SStefano Zampini   PetscCall(PetscLogEventBegin(DM_CreateMassMatrix, dmc, dmf, 0, 0));
1398dbbe0bcdSBarry Smith   PetscUseTypeMethod(dmc, createmassmatrix, dmf, mat);
13998c1c0954SStefano Zampini   PetscCall(PetscLogEventEnd(DM_CreateMassMatrix, dmc, dmf, 0, 0));
14003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1401b4937a87SMatthew G. Knepley }
1402b4937a87SMatthew G. Knepley 
1403b4937a87SMatthew G. Knepley /*@
1404bb7acecfSBarry Smith   DMCreateMassMatrixLumped - Gets the lumped mass matrix for a given `DM`
1405b4937a87SMatthew G. Knepley 
140620f4b53cSBarry Smith   Collective
1407b4937a87SMatthew G. Knepley 
1408b4937a87SMatthew G. Knepley   Input Parameter:
1409bb7acecfSBarry Smith . dm - the `DM` object
1410b4937a87SMatthew G. Knepley 
14117dcfde4dSJose E. Roman   Output Parameters:
14128e9849d2SStefano Zampini + llm - the local lumped mass matrix, which is a diagonal matrix, represented as a vector
14138e9849d2SStefano Zampini - lm  - the global lumped mass matrix, which is a diagonal matrix, represented as a vector
1414b4937a87SMatthew G. Knepley 
1415b4937a87SMatthew G. Knepley   Level: developer
1416b4937a87SMatthew G. Knepley 
1417bb7acecfSBarry Smith   Note:
1418bb7acecfSBarry Smith   See `DMCreateMassMatrix()` for how to create the non-lumped version of the mass matrix.
1419bb7acecfSBarry Smith 
142060225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrix()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()`
1421b4937a87SMatthew G. Knepley @*/
14228e9849d2SStefano Zampini PetscErrorCode DMCreateMassMatrixLumped(DM dm, Vec *llm, Vec *lm)
1423d71ae5a4SJacob Faibussowitsch {
1424b4937a87SMatthew G. Knepley   PetscFunctionBegin;
1425b4937a87SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14268e9849d2SStefano Zampini   if (llm) PetscAssertPointer(llm, 2);
14278e9849d2SStefano Zampini   if (lm) PetscAssertPointer(lm, 3);
14288e9849d2SStefano Zampini   if (llm || lm) PetscUseTypeMethod(dm, createmassmatrixlumped, llm, lm);
14293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1430bd041c0cSMatthew G. Knepley }
1431bd041c0cSMatthew G. Knepley 
1432bd041c0cSMatthew G. Knepley /*@
1433bb7acecfSBarry Smith   DMCreateColoring - Gets coloring of a graph associated with the `DM`. Often the graph represents the operator matrix associated with the discretization
1434bb7acecfSBarry Smith   of a PDE on the `DM`.
143547c6ae99SBarry Smith 
143620f4b53cSBarry Smith   Collective
143747c6ae99SBarry Smith 
1438d8d19677SJose E. Roman   Input Parameters:
1439bb7acecfSBarry Smith + dm    - the `DM` object
1440bb7acecfSBarry Smith - ctype - `IS_COLORING_LOCAL` or `IS_COLORING_GLOBAL`
144147c6ae99SBarry Smith 
144247c6ae99SBarry Smith   Output Parameter:
144347c6ae99SBarry Smith . coloring - the coloring
144447c6ae99SBarry Smith 
14451bf8429eSBarry Smith   Level: developer
14461bf8429eSBarry Smith 
1447ec5066bdSBarry Smith   Notes:
1448bb7acecfSBarry Smith   Coloring of matrices can also be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
1449bb7acecfSBarry Smith   matrix comes from (what this function provides). In general using the mesh produces a more optimal coloring (fewer colors).
1450ec5066bdSBarry Smith 
1451bb7acecfSBarry Smith   This produces a coloring with the distance of 2, see `MatSetColoringDistance()` which can be used for efficiently computing Jacobians with `MatFDColoringCreate()`
14521bf8429eSBarry Smith   For `DMDA` in three dimensions with periodic boundary conditions the number of grid points in each dimension must be divisible by 2*stencil_width + 1,
14531bf8429eSBarry Smith   otherwise an error will be generated.
1454ec5066bdSBarry Smith 
14551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISColoring`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatType()`, `MatColoring`, `MatFDColoringCreate()`
1456aab9d709SJed Brown @*/
1457d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateColoring(DM dm, ISColoringType ctype, ISColoring *coloring)
1458d71ae5a4SJacob Faibussowitsch {
145947c6ae99SBarry Smith   PetscFunctionBegin;
1460171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14614f572ea9SToby Isaac   PetscAssertPointer(coloring, 3);
1462dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, getcoloring, ctype, coloring);
14633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
146447c6ae99SBarry Smith }
146547c6ae99SBarry Smith 
1466b412c318SBarry Smith /*@
1467bb7acecfSBarry Smith   DMCreateMatrix - Gets an empty matrix for a `DM` that is most commonly used to store the Jacobian of a discrete PDE operator.
146847c6ae99SBarry Smith 
146920f4b53cSBarry Smith   Collective
147047c6ae99SBarry Smith 
147147c6ae99SBarry Smith   Input Parameter:
1472bb7acecfSBarry Smith . dm - the `DM` object
147347c6ae99SBarry Smith 
147447c6ae99SBarry Smith   Output Parameter:
147547c6ae99SBarry Smith . mat - the empty Jacobian
147647c6ae99SBarry Smith 
147720f4b53cSBarry Smith   Options Database Key:
1478bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros
1479f27dd7c6SMatthew G. Knepley 
148020f4b53cSBarry Smith   Level: beginner
148120f4b53cSBarry Smith 
148295452b02SPatrick Sanan   Notes:
148395452b02SPatrick Sanan   This properly preallocates the number of nonzeros in the sparse matrix so you
148494013140SBarry Smith   do not need to do it yourself.
148594013140SBarry Smith 
148694013140SBarry Smith   By default it also sets the nonzero structure and puts in the zero entries. To prevent setting
1487bb7acecfSBarry Smith   the nonzero pattern call `DMSetMatrixPreallocateOnly()`
148894013140SBarry Smith 
1489bb7acecfSBarry Smith   For `DMDA`, when you call `MatView()` on this matrix it is displayed using the global natural ordering, NOT in the ordering used
149094013140SBarry Smith   internally by PETSc.
149194013140SBarry Smith 
1492bb7acecfSBarry Smith   For `DMDA`, in general it is easiest to use `MatSetValuesStencil()` or `MatSetValuesLocal()` to put values into the matrix because
1493bb7acecfSBarry Smith   `MatSetValues()` requires the indices for the global numbering for the `DMDA` which is complic`ated to compute
149494013140SBarry Smith 
14951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMSetMatType()`, `DMCreateMassMatrix()`
1496aab9d709SJed Brown @*/
1497d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMatrix(DM dm, Mat *mat)
1498d71ae5a4SJacob Faibussowitsch {
149947c6ae99SBarry Smith   PetscFunctionBegin;
1500171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
15014f572ea9SToby Isaac   PetscAssertPointer(mat, 2);
15029566063dSJacob Faibussowitsch   PetscCall(MatInitializePackage());
15039566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateMatrix, 0, 0, 0, 0));
1504dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, creatematrix, mat);
150576bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1506c6b011d8SStefano Zampini     DM mdm;
1507c6b011d8SStefano Zampini 
15089566063dSJacob Faibussowitsch     PetscCall(MatGetDM(*mat, &mdm));
15097a8be351SBarry Smith     PetscCheck(mdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the matrix", ((PetscObject)dm)->type_name);
1510c6b011d8SStefano Zampini   }
1511e571a35bSMatthew G. Knepley   /* Handle nullspace and near nullspace */
1512e5e52638SMatthew G. Knepley   if (dm->Nf) {
1513e571a35bSMatthew G. Knepley     MatNullSpace nullSpace;
1514649ef022SMatthew Knepley     PetscInt     Nf, f;
1515e571a35bSMatthew G. Knepley 
15169566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
1517649ef022SMatthew Knepley     for (f = 0; f < Nf; ++f) {
1518649ef022SMatthew Knepley       if (dm->nullspaceConstructors[f]) {
15199566063dSJacob Faibussowitsch         PetscCall((*dm->nullspaceConstructors[f])(dm, f, f, &nullSpace));
15209566063dSJacob Faibussowitsch         PetscCall(MatSetNullSpace(*mat, nullSpace));
15219566063dSJacob Faibussowitsch         PetscCall(MatNullSpaceDestroy(&nullSpace));
1522649ef022SMatthew Knepley         break;
1523e571a35bSMatthew G. Knepley       }
1524649ef022SMatthew Knepley     }
1525649ef022SMatthew Knepley     for (f = 0; f < Nf; ++f) {
1526649ef022SMatthew Knepley       if (dm->nearnullspaceConstructors[f]) {
15279566063dSJacob Faibussowitsch         PetscCall((*dm->nearnullspaceConstructors[f])(dm, f, f, &nullSpace));
15289566063dSJacob Faibussowitsch         PetscCall(MatSetNearNullSpace(*mat, nullSpace));
15299566063dSJacob Faibussowitsch         PetscCall(MatNullSpaceDestroy(&nullSpace));
1530e571a35bSMatthew G. Knepley       }
1531e571a35bSMatthew G. Knepley     }
1532e571a35bSMatthew G. Knepley   }
15339566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateMatrix, 0, 0, 0, 0));
15343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
153547c6ae99SBarry Smith }
153647c6ae99SBarry Smith 
1537732e2eb9SMatthew G Knepley /*@
1538a4e35b19SJacob Faibussowitsch   DMSetMatrixPreallocateSkip - When `DMCreateMatrix()` is called the matrix sizes and
1539a4e35b19SJacob Faibussowitsch   `ISLocalToGlobalMapping` will be properly set, but the data structures to store values in the
1540a4e35b19SJacob Faibussowitsch   matrices will not be preallocated.
1541aa0f6e3cSJed Brown 
154220f4b53cSBarry Smith   Logically Collective
1543aa0f6e3cSJed Brown 
1544aa0f6e3cSJed Brown   Input Parameters:
1545bb7acecfSBarry Smith + dm   - the `DM`
1546bb7acecfSBarry Smith - skip - `PETSC_TRUE` to skip preallocation
1547aa0f6e3cSJed Brown 
1548aa0f6e3cSJed Brown   Level: developer
1549aa0f6e3cSJed Brown 
155073ff1848SBarry Smith   Note:
1551a4e35b19SJacob Faibussowitsch   This is most useful to reduce initialization costs when `MatSetPreallocationCOO()` and
1552a4e35b19SJacob Faibussowitsch   `MatSetValuesCOO()` will be used.
1553a4e35b19SJacob Faibussowitsch 
15541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateOnly()`
1555aa0f6e3cSJed Brown @*/
1556d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateSkip(DM dm, PetscBool skip)
1557d71ae5a4SJacob Faibussowitsch {
1558aa0f6e3cSJed Brown   PetscFunctionBegin;
1559aa0f6e3cSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1560aa0f6e3cSJed Brown   dm->prealloc_skip = skip;
15613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1562aa0f6e3cSJed Brown }
1563aa0f6e3cSJed Brown 
1564aa0f6e3cSJed Brown /*@
1565bb7acecfSBarry Smith   DMSetMatrixPreallocateOnly - When `DMCreateMatrix()` is called the matrix will be properly
1566732e2eb9SMatthew G Knepley   preallocated but the nonzero structure and zero values will not be set.
1567732e2eb9SMatthew G Knepley 
156820f4b53cSBarry Smith   Logically Collective
1569732e2eb9SMatthew G Knepley 
1570d8d19677SJose E. Roman   Input Parameters:
1571bb7acecfSBarry Smith + dm   - the `DM`
1572bb7acecfSBarry Smith - only - `PETSC_TRUE` if only want preallocation
1573732e2eb9SMatthew G Knepley 
157420f4b53cSBarry Smith   Options Database Key:
1575bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()`, `DMCreateMassMatrix()`, but do not fill it with zeros
1576f27dd7c6SMatthew G. Knepley 
157720f4b53cSBarry Smith   Level: developer
157820f4b53cSBarry Smith 
15791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateSkip()`
1580732e2eb9SMatthew G Knepley @*/
1581d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateOnly(DM dm, PetscBool only)
1582d71ae5a4SJacob Faibussowitsch {
1583732e2eb9SMatthew G Knepley   PetscFunctionBegin;
1584732e2eb9SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1585732e2eb9SMatthew G Knepley   dm->prealloc_only = only;
15863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1587732e2eb9SMatthew G Knepley }
1588732e2eb9SMatthew G Knepley 
1589b06ff27eSHong Zhang /*@
15900b4b7b1cSBarry Smith   DMSetMatrixStructureOnly - When `DMCreateMatrix()` is called, the matrix nonzero structure will be created
1591bb7acecfSBarry Smith   but the array for numerical values will not be allocated.
1592b06ff27eSHong Zhang 
159320f4b53cSBarry Smith   Logically Collective
1594b06ff27eSHong Zhang 
1595d8d19677SJose E. Roman   Input Parameters:
1596bb7acecfSBarry Smith + dm   - the `DM`
15970b4b7b1cSBarry Smith - only - `PETSC_TRUE` if you only want matrix nonzero structure
1598b06ff27eSHong Zhang 
1599b06ff27eSHong Zhang   Level: developer
1600bb7acecfSBarry Smith 
16011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMSetMatrixPreallocateSkip()`
1602b06ff27eSHong Zhang @*/
1603d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixStructureOnly(DM dm, PetscBool only)
1604d71ae5a4SJacob Faibussowitsch {
1605b06ff27eSHong Zhang   PetscFunctionBegin;
1606b06ff27eSHong Zhang   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1607b06ff27eSHong Zhang   dm->structure_only = only;
16083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1609b06ff27eSHong Zhang }
1610b06ff27eSHong Zhang 
1611863027abSJed Brown /*@
1612863027abSJed Brown   DMSetBlockingType - set the blocking granularity to be used for variable block size `DMCreateMatrix()` is called
1613863027abSJed Brown 
161420f4b53cSBarry Smith   Logically Collective
1615863027abSJed Brown 
1616863027abSJed Brown   Input Parameters:
1617863027abSJed Brown + dm    - the `DM`
1618863027abSJed Brown - btype - block by topological point or field node
1619863027abSJed Brown 
162020f4b53cSBarry Smith   Options Database Key:
16210e762ea3SJed Brown . -dm_blocking_type [topological_point, field_node] - use topological point blocking or field node blocking
1622863027abSJed Brown 
162320f4b53cSBarry Smith   Level: advanced
162420f4b53cSBarry Smith 
16251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()`
1626863027abSJed Brown @*/
1627863027abSJed Brown PetscErrorCode DMSetBlockingType(DM dm, DMBlockingType btype)
1628863027abSJed Brown {
1629863027abSJed Brown   PetscFunctionBegin;
1630863027abSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1631863027abSJed Brown   dm->blocking_type = btype;
16323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1633863027abSJed Brown }
1634863027abSJed Brown 
1635863027abSJed Brown /*@
1636863027abSJed Brown   DMGetBlockingType - get the blocking granularity to be used for variable block size `DMCreateMatrix()` is called
1637863027abSJed Brown 
1638863027abSJed Brown   Not Collective
1639863027abSJed Brown 
16402fe279fdSBarry Smith   Input Parameter:
1641863027abSJed Brown . dm - the `DM`
1642863027abSJed Brown 
16432fe279fdSBarry Smith   Output Parameter:
1644863027abSJed Brown . btype - block by topological point or field node
1645863027abSJed Brown 
1646863027abSJed Brown   Level: advanced
1647863027abSJed Brown 
16481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()`
1649863027abSJed Brown @*/
1650863027abSJed Brown PetscErrorCode DMGetBlockingType(DM dm, DMBlockingType *btype)
1651863027abSJed Brown {
1652863027abSJed Brown   PetscFunctionBegin;
1653863027abSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
16544f572ea9SToby Isaac   PetscAssertPointer(btype, 2);
1655863027abSJed Brown   *btype = dm->blocking_type;
16563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1657863027abSJed Brown }
1658863027abSJed Brown 
1659a89ea682SMatthew G Knepley /*@C
1660bb7acecfSBarry Smith   DMGetWorkArray - Gets a work array guaranteed to be at least the input size, restore with `DMRestoreWorkArray()`
1661a89ea682SMatthew G Knepley 
1662a89ea682SMatthew G Knepley   Not Collective
1663a89ea682SMatthew G Knepley 
1664a89ea682SMatthew G Knepley   Input Parameters:
1665bb7acecfSBarry Smith + dm    - the `DM` object
1666a5b23f4aSJose E. Roman . count - The minimum size
166720f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, or `MPIU_INT`)
1668a89ea682SMatthew G Knepley 
1669a89ea682SMatthew G Knepley   Output Parameter:
167060225df5SJacob Faibussowitsch . mem - the work array
1671a89ea682SMatthew G Knepley 
1672a89ea682SMatthew G Knepley   Level: developer
1673a89ea682SMatthew G Knepley 
167473ff1848SBarry Smith   Notes:
1675da81f932SPierre Jolivet   A `DM` may stash the array between instantiations so using this routine may be more efficient than calling `PetscMalloc()`
1676bb7acecfSBarry Smith 
1677bb7acecfSBarry Smith   The array may contain nonzero values
1678bb7acecfSBarry Smith 
16791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMRestoreWorkArray()`, `PetscMalloc()`
1680a89ea682SMatthew G Knepley @*/
1681d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem)
1682d71ae5a4SJacob Faibussowitsch {
1683aa1993deSMatthew G Knepley   DMWorkLink  link;
168469291d52SBarry Smith   PetscMPIInt dsize;
1685a89ea682SMatthew G Knepley 
1686a89ea682SMatthew G Knepley   PetscFunctionBegin;
1687a89ea682SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
16884f572ea9SToby Isaac   PetscAssertPointer(mem, 4);
1689442f3b32SStefano Zampini   if (!count) {
1690442f3b32SStefano Zampini     *(void **)mem = NULL;
1691442f3b32SStefano Zampini     PetscFunctionReturn(PETSC_SUCCESS);
1692442f3b32SStefano Zampini   }
1693aa1993deSMatthew G Knepley   if (dm->workin) {
1694aa1993deSMatthew G Knepley     link       = dm->workin;
1695aa1993deSMatthew G Knepley     dm->workin = dm->workin->next;
1696aa1993deSMatthew G Knepley   } else {
16974dfa11a4SJacob Faibussowitsch     PetscCall(PetscNew(&link));
1698a89ea682SMatthew G Knepley   }
1699b77fa653SStefano Zampini   /* Avoid MPI_Type_size for most used datatypes
1700b77fa653SStefano Zampini      Get size directly */
1701b77fa653SStefano Zampini   if (dtype == MPIU_INT) dsize = sizeof(PetscInt);
1702b77fa653SStefano Zampini   else if (dtype == MPIU_REAL) dsize = sizeof(PetscReal);
1703b77fa653SStefano Zampini #if defined(PETSC_USE_64BIT_INDICES)
1704b77fa653SStefano Zampini   else if (dtype == MPI_INT) dsize = sizeof(int);
1705b77fa653SStefano Zampini #endif
1706b77fa653SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1707b77fa653SStefano Zampini   else if (dtype == MPIU_SCALAR) dsize = sizeof(PetscScalar);
1708b77fa653SStefano Zampini #endif
1709b77fa653SStefano Zampini   else PetscCallMPI(MPI_Type_size(dtype, &dsize));
1710b77fa653SStefano Zampini 
17115056fcd2SBarry Smith   if (((size_t)dsize * count) > link->bytes) {
17129566063dSJacob Faibussowitsch     PetscCall(PetscFree(link->mem));
17139566063dSJacob Faibussowitsch     PetscCall(PetscMalloc(dsize * count, &link->mem));
1714854ce69bSBarry Smith     link->bytes = dsize * count;
1715aa1993deSMatthew G Knepley   }
1716aa1993deSMatthew G Knepley   link->next    = dm->workout;
1717aa1993deSMatthew G Knepley   dm->workout   = link;
1718aa1993deSMatthew G Knepley   *(void **)mem = link->mem;
17193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1720a89ea682SMatthew G Knepley }
1721a89ea682SMatthew G Knepley 
1722aa1993deSMatthew G Knepley /*@C
1723bb7acecfSBarry Smith   DMRestoreWorkArray - Restores a work array obtained with `DMCreateWorkArray()`
1724aa1993deSMatthew G Knepley 
1725aa1993deSMatthew G Knepley   Not Collective
1726aa1993deSMatthew G Knepley 
1727aa1993deSMatthew G Knepley   Input Parameters:
1728bb7acecfSBarry Smith + dm    - the `DM` object
1729a5b23f4aSJose E. Roman . count - The minimum size
173020f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, `MPIU_INT`
1731aa1993deSMatthew G Knepley 
1732aa1993deSMatthew G Knepley   Output Parameter:
173360225df5SJacob Faibussowitsch . mem - the work array
1734aa1993deSMatthew G Knepley 
1735aa1993deSMatthew G Knepley   Level: developer
1736aa1993deSMatthew G Knepley 
173773ff1848SBarry Smith   Developer Note:
1738bb7acecfSBarry Smith   count and dtype are ignored, they are only needed for `DMGetWorkArray()`
1739147403d9SBarry Smith 
17401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMGetWorkArray()`
1741aa1993deSMatthew G Knepley @*/
1742d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestoreWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem)
1743d71ae5a4SJacob Faibussowitsch {
1744aa1993deSMatthew G Knepley   DMWorkLink *p, link;
1745aa1993deSMatthew G Knepley 
1746aa1993deSMatthew G Knepley   PetscFunctionBegin;
1747aa1993deSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
17484f572ea9SToby Isaac   PetscAssertPointer(mem, 4);
1749a4e35b19SJacob Faibussowitsch   (void)count;
1750a4e35b19SJacob Faibussowitsch   (void)dtype;
1751442f3b32SStefano Zampini   if (!*(void **)mem) PetscFunctionReturn(PETSC_SUCCESS);
1752aa1993deSMatthew G Knepley   for (p = &dm->workout; (link = *p); p = &link->next) {
1753aa1993deSMatthew G Knepley     if (link->mem == *(void **)mem) {
1754aa1993deSMatthew G Knepley       *p            = link->next;
1755aa1993deSMatthew G Knepley       link->next    = dm->workin;
1756aa1993deSMatthew G Knepley       dm->workin    = link;
17570298fd71SBarry Smith       *(void **)mem = NULL;
17583ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1759aa1993deSMatthew G Knepley     }
1760aa1993deSMatthew G Knepley   }
1761aa1993deSMatthew G Knepley   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Array was not checked out");
1762aa1993deSMatthew G Knepley }
1763e7c4fc90SDmitry Karpeev 
17648cda7954SMatthew G. Knepley /*@C
1765bb7acecfSBarry Smith   DMSetNullSpaceConstructor - Provide a callback function which constructs the nullspace for a given field, defined with `DMAddField()`, when function spaces
1766bb7acecfSBarry Smith   are joined or split, such as in `DMCreateSubDM()`
17678cda7954SMatthew G. Knepley 
176820f4b53cSBarry Smith   Logically Collective; No Fortran Support
17698cda7954SMatthew G. Knepley 
17708cda7954SMatthew G. Knepley   Input Parameters:
1771bb7acecfSBarry Smith + dm     - The `DM`
17728cda7954SMatthew G. Knepley . field  - The field number for the nullspace
17738cda7954SMatthew G. Knepley - nullsp - A callback to create the nullspace
17748cda7954SMatthew G. Knepley 
177520f4b53cSBarry Smith   Calling sequence of `nullsp`:
1776bb7acecfSBarry Smith + dm        - The present `DM`
1777bb7acecfSBarry Smith . origField - The field number given above, in the original `DM`
1778147403d9SBarry Smith . field     - The field number in dm
1779147403d9SBarry Smith - nullSpace - The nullspace for the given field
17808cda7954SMatthew G. Knepley 
178149762cbcSSatish Balay   Level: intermediate
178249762cbcSSatish Balay 
17831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
1784147403d9SBarry Smith @*/
1785a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1786d71ae5a4SJacob Faibussowitsch {
1787435a35e8SMatthew G Knepley   PetscFunctionBegin;
1788435a35e8SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
17897a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1790435a35e8SMatthew G Knepley   dm->nullspaceConstructors[field] = nullsp;
17913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1792435a35e8SMatthew G Knepley }
1793435a35e8SMatthew G Knepley 
17948cda7954SMatthew G. Knepley /*@C
1795bb7acecfSBarry Smith   DMGetNullSpaceConstructor - Return the callback function which constructs the nullspace for a given field, defined with `DMAddField()`
17968cda7954SMatthew G. Knepley 
179720f4b53cSBarry Smith   Not Collective; No Fortran Support
17988cda7954SMatthew G. Knepley 
17998cda7954SMatthew G. Knepley   Input Parameters:
1800bb7acecfSBarry Smith + dm    - The `DM`
18018cda7954SMatthew G. Knepley - field - The field number for the nullspace
18028cda7954SMatthew G. Knepley 
18038cda7954SMatthew G. Knepley   Output Parameter:
18048cda7954SMatthew G. Knepley . nullsp - A callback to create the nullspace
18058cda7954SMatthew G. Knepley 
180620f4b53cSBarry Smith   Calling sequence of `nullsp`:
1807147403d9SBarry Smith + dm        - The present DM
1808147403d9SBarry Smith . origField - The field number given above, in the original DM
1809147403d9SBarry Smith . field     - The field number in dm
1810147403d9SBarry Smith - nullSpace - The nullspace for the given field
18118cda7954SMatthew G. Knepley 
181249762cbcSSatish Balay   Level: intermediate
181349762cbcSSatish Balay 
18141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
1815147403d9SBarry Smith @*/
1816a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1817d71ae5a4SJacob Faibussowitsch {
18180a50eb56SMatthew G. Knepley   PetscFunctionBegin;
18190a50eb56SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
18204f572ea9SToby Isaac   PetscAssertPointer(nullsp, 3);
18217a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
18220a50eb56SMatthew G. Knepley   *nullsp = dm->nullspaceConstructors[field];
18233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18240a50eb56SMatthew G. Knepley }
18250a50eb56SMatthew G. Knepley 
18268cda7954SMatthew G. Knepley /*@C
1827bb7acecfSBarry Smith   DMSetNearNullSpaceConstructor - Provide a callback function which constructs the near-nullspace for a given field, defined with `DMAddField()`
18288cda7954SMatthew G. Knepley 
182920f4b53cSBarry Smith   Logically Collective; No Fortran Support
18308cda7954SMatthew G. Knepley 
18318cda7954SMatthew G. Knepley   Input Parameters:
1832bb7acecfSBarry Smith + dm     - The `DM`
18338cda7954SMatthew G. Knepley . field  - The field number for the nullspace
18348cda7954SMatthew G. Knepley - nullsp - A callback to create the near-nullspace
18358cda7954SMatthew G. Knepley 
183620f4b53cSBarry Smith   Calling sequence of `nullsp`:
1837bb7acecfSBarry Smith + dm        - The present `DM`
1838bb7acecfSBarry Smith . origField - The field number given above, in the original `DM`
1839147403d9SBarry Smith . field     - The field number in dm
1840147403d9SBarry Smith - nullSpace - The nullspace for the given field
18418cda7954SMatthew G. Knepley 
184249762cbcSSatish Balay   Level: intermediate
184349762cbcSSatish Balay 
18441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`,
1845bb7acecfSBarry Smith           `MatNullSpace`
1846147403d9SBarry Smith @*/
1847a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1848d71ae5a4SJacob Faibussowitsch {
1849f9d4088aSMatthew G. Knepley   PetscFunctionBegin;
1850f9d4088aSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
18517a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1852f9d4088aSMatthew G. Knepley   dm->nearnullspaceConstructors[field] = nullsp;
18533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1854f9d4088aSMatthew G. Knepley }
1855f9d4088aSMatthew G. Knepley 
18568cda7954SMatthew G. Knepley /*@C
1857bb7acecfSBarry Smith   DMGetNearNullSpaceConstructor - Return the callback function which constructs the near-nullspace for a given field, defined with `DMAddField()`
18588cda7954SMatthew G. Knepley 
185920f4b53cSBarry Smith   Not Collective; No Fortran Support
18608cda7954SMatthew G. Knepley 
18618cda7954SMatthew G. Knepley   Input Parameters:
1862bb7acecfSBarry Smith + dm    - The `DM`
18638cda7954SMatthew G. Knepley - field - The field number for the nullspace
18648cda7954SMatthew G. Knepley 
18658cda7954SMatthew G. Knepley   Output Parameter:
18668cda7954SMatthew G. Knepley . nullsp - A callback to create the near-nullspace
18678cda7954SMatthew G. Knepley 
186820f4b53cSBarry Smith   Calling sequence of `nullsp`:
1869bb7acecfSBarry Smith + dm        - The present `DM`
1870bb7acecfSBarry Smith . origField - The field number given above, in the original `DM`
1871147403d9SBarry Smith . field     - The field number in dm
1872147403d9SBarry Smith - nullSpace - The nullspace for the given field
18738cda7954SMatthew G. Knepley 
187449762cbcSSatish Balay   Level: intermediate
187549762cbcSSatish Balay 
18761cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`,
1877bb7acecfSBarry Smith           `MatNullSpace`, `DMCreateSuperDM()`
1878147403d9SBarry Smith @*/
1879a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1880d71ae5a4SJacob Faibussowitsch {
1881f9d4088aSMatthew G. Knepley   PetscFunctionBegin;
1882f9d4088aSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
18834f572ea9SToby Isaac   PetscAssertPointer(nullsp, 3);
18847a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1885f9d4088aSMatthew G. Knepley   *nullsp = dm->nearnullspaceConstructors[field];
18863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1887f9d4088aSMatthew G. Knepley }
1888f9d4088aSMatthew G. Knepley 
18894f3b5142SJed Brown /*@C
1890bb7acecfSBarry Smith   DMCreateFieldIS - Creates a set of `IS` objects with the global indices of dofs for each field defined with `DMAddField()`
18914d343eeaSMatthew G Knepley 
189220f4b53cSBarry Smith   Not Collective; No Fortran Support
18934d343eeaSMatthew G Knepley 
18944d343eeaSMatthew G Knepley   Input Parameter:
1895bb7acecfSBarry Smith . dm - the `DM` object
18964d343eeaSMatthew G Knepley 
18974d343eeaSMatthew G Knepley   Output Parameters:
189820f4b53cSBarry Smith + numFields  - The number of fields (or `NULL` if not requested)
189920f4b53cSBarry Smith . fieldNames - The number of each field (or `NULL` if not requested)
190020f4b53cSBarry Smith - fields     - The global indices for each field (or `NULL` if not requested)
19014d343eeaSMatthew G Knepley 
19024d343eeaSMatthew G Knepley   Level: intermediate
19034d343eeaSMatthew G Knepley 
1904bb7acecfSBarry Smith   Note:
190573ff1848SBarry Smith   The user is responsible for freeing all requested arrays. In particular, every entry of `fieldNames` should be freed with
190673ff1848SBarry Smith   `PetscFree()`, every entry of `fields` should be destroyed with `ISDestroy()`, and both arrays should be freed with
1907bb7acecfSBarry Smith   `PetscFree()`.
190821c9b008SJed Brown 
190973ff1848SBarry Smith   Developer Note:
1910bb7acecfSBarry Smith   It is not clear why both this function and `DMCreateFieldDecomposition()` exist. Having two seems redundant and confusing. This function should
1911bb7acecfSBarry Smith   likely be removed.
1912bb7acecfSBarry Smith 
19131cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
1914bb7acecfSBarry Smith           `DMCreateFieldDecomposition()`
19154d343eeaSMatthew G Knepley @*/
1916d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldIS(DM dm, PetscInt *numFields, char ***fieldNames, IS **fields)
1917d71ae5a4SJacob Faibussowitsch {
191837d0c07bSMatthew G Knepley   PetscSection section, sectionGlobal;
19194d343eeaSMatthew G Knepley 
19204d343eeaSMatthew G Knepley   PetscFunctionBegin;
19214d343eeaSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
192269ca1f37SDmitry Karpeev   if (numFields) {
19234f572ea9SToby Isaac     PetscAssertPointer(numFields, 2);
192469ca1f37SDmitry Karpeev     *numFields = 0;
192569ca1f37SDmitry Karpeev   }
192637d0c07bSMatthew G Knepley   if (fieldNames) {
19274f572ea9SToby Isaac     PetscAssertPointer(fieldNames, 3);
19280298fd71SBarry Smith     *fieldNames = NULL;
192969ca1f37SDmitry Karpeev   }
193069ca1f37SDmitry Karpeev   if (fields) {
19314f572ea9SToby Isaac     PetscAssertPointer(fields, 4);
19320298fd71SBarry Smith     *fields = NULL;
193369ca1f37SDmitry Karpeev   }
19349566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
193537d0c07bSMatthew G Knepley   if (section) {
19363a544194SStefano Zampini     PetscInt *fieldSizes, *fieldNc, **fieldIndices;
193737d0c07bSMatthew G Knepley     PetscInt  nF, f, pStart, pEnd, p;
193837d0c07bSMatthew G Knepley 
19399566063dSJacob Faibussowitsch     PetscCall(DMGetGlobalSection(dm, &sectionGlobal));
19409566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetNumFields(section, &nF));
19419566063dSJacob Faibussowitsch     PetscCall(PetscMalloc3(nF, &fieldSizes, nF, &fieldNc, nF, &fieldIndices));
19429566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd));
194337d0c07bSMatthew G Knepley     for (f = 0; f < nF; ++f) {
194437d0c07bSMatthew G Knepley       fieldSizes[f] = 0;
19459566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldComponents(section, f, &fieldNc[f]));
194637d0c07bSMatthew G Knepley     }
194737d0c07bSMatthew G Knepley     for (p = pStart; p < pEnd; ++p) {
194837d0c07bSMatthew G Knepley       PetscInt gdof;
194937d0c07bSMatthew G Knepley 
19509566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof));
195137d0c07bSMatthew G Knepley       if (gdof > 0) {
195237d0c07bSMatthew G Knepley         for (f = 0; f < nF; ++f) {
19533a544194SStefano Zampini           PetscInt fdof, fcdof, fpdof;
195437d0c07bSMatthew G Knepley 
19559566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof));
19569566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof));
19573a544194SStefano Zampini           fpdof = fdof - fcdof;
19583a544194SStefano Zampini           if (fpdof && fpdof != fieldNc[f]) {
19593a544194SStefano Zampini             /* Layout does not admit a pointwise block size */
19603a544194SStefano Zampini             fieldNc[f] = 1;
19613a544194SStefano Zampini           }
19623a544194SStefano Zampini           fieldSizes[f] += fpdof;
196337d0c07bSMatthew G Knepley         }
196437d0c07bSMatthew G Knepley       }
196537d0c07bSMatthew G Knepley     }
196637d0c07bSMatthew G Knepley     for (f = 0; f < nF; ++f) {
19679566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(fieldSizes[f], &fieldIndices[f]));
196837d0c07bSMatthew G Knepley       fieldSizes[f] = 0;
196937d0c07bSMatthew G Knepley     }
197037d0c07bSMatthew G Knepley     for (p = pStart; p < pEnd; ++p) {
197137d0c07bSMatthew G Knepley       PetscInt gdof, goff;
197237d0c07bSMatthew G Knepley 
19739566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof));
197437d0c07bSMatthew G Knepley       if (gdof > 0) {
19759566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(sectionGlobal, p, &goff));
197637d0c07bSMatthew G Knepley         for (f = 0; f < nF; ++f) {
197737d0c07bSMatthew G Knepley           PetscInt fdof, fcdof, fc;
197837d0c07bSMatthew G Knepley 
19799566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof));
19809566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof));
1981ad540459SPierre Jolivet           for (fc = 0; fc < fdof - fcdof; ++fc, ++fieldSizes[f]) fieldIndices[f][fieldSizes[f]] = goff++;
198237d0c07bSMatthew G Knepley         }
198337d0c07bSMatthew G Knepley       }
198437d0c07bSMatthew G Knepley     }
19858865f1eaSKarl Rupp     if (numFields) *numFields = nF;
198637d0c07bSMatthew G Knepley     if (fieldNames) {
19879566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nF, fieldNames));
198837d0c07bSMatthew G Knepley       for (f = 0; f < nF; ++f) {
198937d0c07bSMatthew G Knepley         const char *fieldName;
199037d0c07bSMatthew G Knepley 
19919566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetFieldName(section, f, &fieldName));
1992835f2295SStefano Zampini         PetscCall(PetscStrallocpy(fieldName, &(*fieldNames)[f]));
199337d0c07bSMatthew G Knepley       }
199437d0c07bSMatthew G Knepley     }
199537d0c07bSMatthew G Knepley     if (fields) {
19969566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nF, fields));
199737d0c07bSMatthew G Knepley       for (f = 0; f < nF; ++f) {
19983a544194SStefano Zampini         PetscInt bs, in[2], out[2];
19993a544194SStefano Zampini 
20009566063dSJacob Faibussowitsch         PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), fieldSizes[f], fieldIndices[f], PETSC_OWN_POINTER, &(*fields)[f]));
20013a544194SStefano Zampini         in[0] = -fieldNc[f];
20023a544194SStefano Zampini         in[1] = fieldNc[f];
2003462c564dSBarry Smith         PetscCallMPI(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm)));
20043a544194SStefano Zampini         bs = (-out[0] == out[1]) ? out[1] : 1;
20059566063dSJacob Faibussowitsch         PetscCall(ISSetBlockSize((*fields)[f], bs));
200637d0c07bSMatthew G Knepley       }
200737d0c07bSMatthew G Knepley     }
20089566063dSJacob Faibussowitsch     PetscCall(PetscFree3(fieldSizes, fieldNc, fieldIndices));
2009dbbe0bcdSBarry Smith   } else PetscTryTypeMethod(dm, createfieldis, numFields, fieldNames, fields);
20103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20114d343eeaSMatthew G Knepley }
20124d343eeaSMatthew G Knepley 
201316621825SDmitry Karpeev /*@C
2014bb7acecfSBarry Smith   DMCreateFieldDecomposition - Returns a list of `IS` objects defining a decomposition of a problem into subproblems
2015a4e35b19SJacob Faibussowitsch   corresponding to different fields.
2016e7c4fc90SDmitry Karpeev 
201720f4b53cSBarry Smith   Not Collective; No Fortran Support
2018e7c4fc90SDmitry Karpeev 
2019e7c4fc90SDmitry Karpeev   Input Parameter:
2020bb7acecfSBarry Smith . dm - the `DM` object
2021e7c4fc90SDmitry Karpeev 
2022e7c4fc90SDmitry Karpeev   Output Parameters:
202320f4b53cSBarry Smith + len      - The number of fields (or `NULL` if not requested)
202420f4b53cSBarry Smith . namelist - The name for each field (or `NULL` if not requested)
202520f4b53cSBarry Smith . islist   - The global indices for each field (or `NULL` if not requested)
202620f4b53cSBarry Smith - dmlist   - The `DM`s for each field subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined)
2027e7c4fc90SDmitry Karpeev 
2028e7c4fc90SDmitry Karpeev   Level: intermediate
2029e7c4fc90SDmitry Karpeev 
2030a4e35b19SJacob Faibussowitsch   Notes:
2031a4e35b19SJacob Faibussowitsch   Each `IS` contains the global indices of the dofs of the corresponding field, defined by
2032a4e35b19SJacob Faibussowitsch   `DMAddField()`. The optional list of `DM`s define the `DM` for each subproblem.
2033a4e35b19SJacob Faibussowitsch 
2034a4e35b19SJacob Faibussowitsch   The same as `DMCreateFieldIS()` but also returns a `DM` for each field.
2035a4e35b19SJacob Faibussowitsch 
203673ff1848SBarry Smith   The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with
203773ff1848SBarry Smith   `PetscFree()`, every entry of `islist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`,
2038bb7acecfSBarry Smith   and all of the arrays should be freed with `PetscFree()`.
2039e7c4fc90SDmitry Karpeev 
204060225df5SJacob Faibussowitsch   Developer Notes:
2041bb7acecfSBarry Smith   It is not clear why this function and `DMCreateFieldIS()` exist. Having two seems redundant and confusing.
2042bb7acecfSBarry Smith 
204373ff1848SBarry Smith   Unlike  `DMRefine()`, `DMCoarsen()`, and `DMCreateDomainDecomposition()` this provides no mechanism to provide hooks that are called after the
204473ff1848SBarry Smith   decomposition is computed.
204573ff1848SBarry Smith 
204673ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMCreateFieldIS()`, `DMCreateSubDM()`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`
2047e7c4fc90SDmitry Karpeev @*/
2048d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldDecomposition(DM dm, PetscInt *len, char ***namelist, IS **islist, DM **dmlist)
2049d71ae5a4SJacob Faibussowitsch {
2050e7c4fc90SDmitry Karpeev   PetscFunctionBegin;
2051e7c4fc90SDmitry Karpeev   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
20528865f1eaSKarl Rupp   if (len) {
20534f572ea9SToby Isaac     PetscAssertPointer(len, 2);
20548865f1eaSKarl Rupp     *len = 0;
20558865f1eaSKarl Rupp   }
20568865f1eaSKarl Rupp   if (namelist) {
20574f572ea9SToby Isaac     PetscAssertPointer(namelist, 3);
2058ea78f98cSLisandro Dalcin     *namelist = NULL;
20598865f1eaSKarl Rupp   }
20608865f1eaSKarl Rupp   if (islist) {
20614f572ea9SToby Isaac     PetscAssertPointer(islist, 4);
2062ea78f98cSLisandro Dalcin     *islist = NULL;
20638865f1eaSKarl Rupp   }
20648865f1eaSKarl Rupp   if (dmlist) {
20654f572ea9SToby Isaac     PetscAssertPointer(dmlist, 5);
2066ea78f98cSLisandro Dalcin     *dmlist = NULL;
20678865f1eaSKarl Rupp   }
2068f3f0edfdSDmitry Karpeev   /*
2069f3f0edfdSDmitry Karpeev    Is it a good idea to apply the following check across all impls?
2070f3f0edfdSDmitry Karpeev    Perhaps some impls can have a well-defined decomposition before DMSetUp?
2071f3f0edfdSDmitry Karpeev    This, however, follows the general principle that accessors are not well-behaved until the object is set up.
2072f3f0edfdSDmitry Karpeev    */
20737a8be351SBarry Smith   PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp");
207416621825SDmitry Karpeev   if (!dm->ops->createfielddecomposition) {
2075435a35e8SMatthew G Knepley     PetscSection section;
2076435a35e8SMatthew G Knepley     PetscInt     numFields, f;
2077435a35e8SMatthew G Knepley 
20789566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
20799566063dSJacob Faibussowitsch     if (section) PetscCall(PetscSectionGetNumFields(section, &numFields));
2080435a35e8SMatthew G Knepley     if (section && numFields && dm->ops->createsubdm) {
2081f25d98f1SMatthew G. Knepley       if (len) *len = numFields;
20829566063dSJacob Faibussowitsch       if (namelist) PetscCall(PetscMalloc1(numFields, namelist));
20839566063dSJacob Faibussowitsch       if (islist) PetscCall(PetscMalloc1(numFields, islist));
20849566063dSJacob Faibussowitsch       if (dmlist) PetscCall(PetscMalloc1(numFields, dmlist));
2085435a35e8SMatthew G Knepley       for (f = 0; f < numFields; ++f) {
2086435a35e8SMatthew G Knepley         const char *fieldName;
2087435a35e8SMatthew G Knepley 
20889566063dSJacob Faibussowitsch         PetscCall(DMCreateSubDM(dm, 1, &f, islist ? &(*islist)[f] : NULL, dmlist ? &(*dmlist)[f] : NULL));
208903dc3394SMatthew G. Knepley         if (namelist) {
20909566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldName(section, f, &fieldName));
2091835f2295SStefano Zampini           PetscCall(PetscStrallocpy(fieldName, &(*namelist)[f]));
2092435a35e8SMatthew G Knepley         }
209303dc3394SMatthew G. Knepley       }
2094435a35e8SMatthew G Knepley     } else {
20959566063dSJacob Faibussowitsch       PetscCall(DMCreateFieldIS(dm, len, namelist, islist));
2096e7c4fc90SDmitry Karpeev       /* By default there are no DMs associated with subproblems. */
20970298fd71SBarry Smith       if (dmlist) *dmlist = NULL;
2098e7c4fc90SDmitry Karpeev     }
2099dbbe0bcdSBarry Smith   } else PetscUseTypeMethod(dm, createfielddecomposition, len, namelist, islist, dmlist);
21003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
210116621825SDmitry Karpeev }
210216621825SDmitry Karpeev 
21035d83a8b1SBarry Smith /*@
210420f4b53cSBarry Smith   DMCreateSubDM - Returns an `IS` and `DM` encapsulating a subproblem defined by the fields passed in.
210520f4b53cSBarry Smith   The fields are defined by `DMCreateFieldIS()`.
2106435a35e8SMatthew G Knepley 
2107435a35e8SMatthew G Knepley   Not collective
2108435a35e8SMatthew G Knepley 
2109435a35e8SMatthew G Knepley   Input Parameters:
2110bb7acecfSBarry Smith + dm        - The `DM` object
2111bb7acecfSBarry Smith . numFields - The number of fields to select
21122adcc780SMatthew G. Knepley - fields    - The field numbers of the selected fields
2113435a35e8SMatthew G Knepley 
2114435a35e8SMatthew G Knepley   Output Parameters:
2115b6971eaeSBarry Smith + is    - The global indices for all the degrees of freedom in the new sub `DM`, use `NULL` if not needed
2116b6971eaeSBarry Smith - subdm - The `DM` for the subproblem, use `NULL` if not needed
2117435a35e8SMatthew G Knepley 
211820f4b53cSBarry Smith   Level: intermediate
211920f4b53cSBarry Smith 
2120bb7acecfSBarry Smith   Note:
2121bb7acecfSBarry Smith   You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed
21225d3b26e6SMatthew G. Knepley 
212360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateFieldIS()`, `DMCreateFieldDecomposition()`, `DMAddField()`, `DMCreateSuperDM()`, `IS`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
2124435a35e8SMatthew G Knepley @*/
2125d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSubDM(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm)
2126d71ae5a4SJacob Faibussowitsch {
2127435a35e8SMatthew G Knepley   PetscFunctionBegin;
2128435a35e8SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
21294f572ea9SToby Isaac   PetscAssertPointer(fields, 3);
21304f572ea9SToby Isaac   if (is) PetscAssertPointer(is, 4);
21314f572ea9SToby Isaac   if (subdm) PetscAssertPointer(subdm, 5);
2132dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createsubdm, numFields, fields, is, subdm);
21333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2134435a35e8SMatthew G Knepley }
2135435a35e8SMatthew G Knepley 
21362adcc780SMatthew G. Knepley /*@C
2137bb7acecfSBarry Smith   DMCreateSuperDM - Returns an arrays of `IS` and `DM` encapsulating a superproblem defined by multiple `DM`s passed in.
21382adcc780SMatthew G. Knepley 
21392adcc780SMatthew G. Knepley   Not collective
21402adcc780SMatthew G. Knepley 
2141d8d19677SJose E. Roman   Input Parameters:
2142bb7acecfSBarry Smith + dms - The `DM` objects
2143bb7acecfSBarry Smith - n   - The number of `DM`s
21442adcc780SMatthew G. Knepley 
21452adcc780SMatthew G. Knepley   Output Parameters:
2146bb7acecfSBarry Smith + is      - The global indices for each of subproblem within the super `DM`, or NULL
2147bb7acecfSBarry Smith - superdm - The `DM` for the superproblem
21482adcc780SMatthew G. Knepley 
214920f4b53cSBarry Smith   Level: intermediate
215020f4b53cSBarry Smith 
2151bb7acecfSBarry Smith   Note:
2152bb7acecfSBarry Smith   You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed
21535d3b26e6SMatthew G. Knepley 
215473ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateSubDM()`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`, `DMCreateDomainDecomposition()`
21552adcc780SMatthew G. Knepley @*/
21565d83a8b1SBarry Smith PetscErrorCode DMCreateSuperDM(DM dms[], PetscInt n, IS *is[], DM *superdm)
2157d71ae5a4SJacob Faibussowitsch {
21582adcc780SMatthew G. Knepley   PetscInt i;
21592adcc780SMatthew G. Knepley 
21602adcc780SMatthew G. Knepley   PetscFunctionBegin;
21614f572ea9SToby Isaac   PetscAssertPointer(dms, 1);
2162ad540459SPierre Jolivet   for (i = 0; i < n; ++i) PetscValidHeaderSpecific(dms[i], DM_CLASSID, 1);
21634f572ea9SToby Isaac   if (is) PetscAssertPointer(is, 3);
21644f572ea9SToby Isaac   PetscAssertPointer(superdm, 4);
2165bb7acecfSBarry Smith   PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of DMs must be nonnegative: %" PetscInt_FMT, n);
2166bb7acecfSBarry Smith   if (n) {
2167b9d85ea2SLisandro Dalcin     DM dm = dms[0];
216800045ab3SPierre Jolivet     PetscCheck(dm->ops->createsuperdm, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No method createsuperdm for DM of type %s", ((PetscObject)dm)->type_name);
2169dbbe0bcdSBarry Smith     PetscCall((*dm->ops->createsuperdm)(dms, n, is, superdm));
21702adcc780SMatthew G. Knepley   }
21713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21722adcc780SMatthew G. Knepley }
21732adcc780SMatthew G. Knepley 
217416621825SDmitry Karpeev /*@C
2175a4e35b19SJacob Faibussowitsch   DMCreateDomainDecomposition - Returns lists of `IS` objects defining a decomposition of a
2176a4e35b19SJacob Faibussowitsch   problem into subproblems corresponding to restrictions to pairs of nested subdomains.
217716621825SDmitry Karpeev 
217820f4b53cSBarry Smith   Not Collective
217916621825SDmitry Karpeev 
218016621825SDmitry Karpeev   Input Parameter:
2181bb7acecfSBarry Smith . dm - the `DM` object
218216621825SDmitry Karpeev 
218316621825SDmitry Karpeev   Output Parameters:
218420f4b53cSBarry Smith + n           - The number of subproblems in the domain decomposition (or `NULL` if not requested)
218520f4b53cSBarry Smith . namelist    - The name for each subdomain (or `NULL` if not requested)
218673ff1848SBarry Smith . innerislist - The global indices for each inner subdomain (or `NULL`, if not requested)
218773ff1848SBarry Smith . outerislist - The global indices for each outer subdomain (or `NULL`, if not requested)
218873ff1848SBarry Smith - dmlist      - The `DM`s for each subdomain subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined)
218916621825SDmitry Karpeev 
219016621825SDmitry Karpeev   Level: intermediate
219116621825SDmitry Karpeev 
219273ff1848SBarry Smith   Notes:
2193a4e35b19SJacob Faibussowitsch   Each `IS` contains the global indices of the dofs of the corresponding subdomains with in the
2194a4e35b19SJacob Faibussowitsch   dofs of the original `DM`. The inner subdomains conceptually define a nonoverlapping
2195a4e35b19SJacob Faibussowitsch   covering, while outer subdomains can overlap.
2196a4e35b19SJacob Faibussowitsch 
2197a4e35b19SJacob Faibussowitsch   The optional list of `DM`s define a `DM` for each subproblem.
2198a4e35b19SJacob Faibussowitsch 
219973ff1848SBarry Smith   The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with
220073ff1848SBarry Smith   `PetscFree()`, every entry of `innerislist` and `outerislist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`,
2201bb7acecfSBarry Smith   and all of the arrays should be freed with `PetscFree()`.
220216621825SDmitry Karpeev 
2203a4e35b19SJacob Faibussowitsch   Developer Notes:
220420f4b53cSBarry Smith   The `dmlist` is for the inner subdomains or the outer subdomains or all subdomains?
2205bb7acecfSBarry Smith 
220673ff1848SBarry Smith   The names are inconsistent, the hooks use `DMSubDomainHook` which is nothing like `DMCreateDomainDecomposition()` while `DMRefineHook` is used for `DMRefine()`.
220773ff1848SBarry Smith 
220873ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateFieldDecomposition()`, `DMDestroy()`, `DMCreateDomainDecompositionScatters()`, `DMView()`, `DMCreateInterpolation()`,
220973ff1848SBarry Smith           `DMSubDomainHookAdd()`, `DMSubDomainHookRemove()`,`DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`
221016621825SDmitry Karpeev @*/
2211d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecomposition(DM dm, PetscInt *n, char ***namelist, IS **innerislist, IS **outerislist, DM **dmlist)
2212d71ae5a4SJacob Faibussowitsch {
2213be081cd6SPeter Brune   DMSubDomainHookLink link;
2214be081cd6SPeter Brune   PetscInt            i, l;
221516621825SDmitry Karpeev 
221616621825SDmitry Karpeev   PetscFunctionBegin;
221716621825SDmitry Karpeev   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
22189371c9d4SSatish Balay   if (n) {
22194f572ea9SToby Isaac     PetscAssertPointer(n, 2);
22209371c9d4SSatish Balay     *n = 0;
22219371c9d4SSatish Balay   }
22229371c9d4SSatish Balay   if (namelist) {
22234f572ea9SToby Isaac     PetscAssertPointer(namelist, 3);
22249371c9d4SSatish Balay     *namelist = NULL;
22259371c9d4SSatish Balay   }
22269371c9d4SSatish Balay   if (innerislist) {
22274f572ea9SToby Isaac     PetscAssertPointer(innerislist, 4);
22289371c9d4SSatish Balay     *innerislist = NULL;
22299371c9d4SSatish Balay   }
22309371c9d4SSatish Balay   if (outerislist) {
22314f572ea9SToby Isaac     PetscAssertPointer(outerislist, 5);
22329371c9d4SSatish Balay     *outerislist = NULL;
22339371c9d4SSatish Balay   }
22349371c9d4SSatish Balay   if (dmlist) {
22354f572ea9SToby Isaac     PetscAssertPointer(dmlist, 6);
22369371c9d4SSatish Balay     *dmlist = NULL;
22379371c9d4SSatish Balay   }
2238f3f0edfdSDmitry Karpeev   /*
2239f3f0edfdSDmitry Karpeev    Is it a good idea to apply the following check across all impls?
2240f3f0edfdSDmitry Karpeev    Perhaps some impls can have a well-defined decomposition before DMSetUp?
2241f3f0edfdSDmitry Karpeev    This, however, follows the general principle that accessors are not well-behaved until the object is set up.
2242f3f0edfdSDmitry Karpeev    */
22437a8be351SBarry Smith   PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp");
224416621825SDmitry Karpeev   if (dm->ops->createdomaindecomposition) {
2245dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm, createdomaindecomposition, &l, namelist, innerislist, outerislist, dmlist);
224614a18fd3SPeter Brune     /* copy subdomain hooks and context over to the subdomain DMs */
2247f891f5b9SPatrick Sanan     if (dmlist && *dmlist) {
2248be081cd6SPeter Brune       for (i = 0; i < l; i++) {
2249be081cd6SPeter Brune         for (link = dm->subdomainhook; link; link = link->next) {
22509566063dSJacob Faibussowitsch           if (link->ddhook) PetscCall((*link->ddhook)(dm, (*dmlist)[i], link->ctx));
2251be081cd6SPeter Brune         }
2252648262bbSPatrick Sanan         if (dm->ctx) (*dmlist)[i]->ctx = dm->ctx;
2253e7c4fc90SDmitry Karpeev       }
225414a18fd3SPeter Brune     }
2255bb7acecfSBarry Smith     if (n) *n = l;
225614a18fd3SPeter Brune   }
22573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2258e30e807fSPeter Brune }
2259e30e807fSPeter Brune 
2260e30e807fSPeter Brune /*@C
226173ff1848SBarry Smith   DMCreateDomainDecompositionScatters - Returns scatters to the subdomain vectors from the global vector for subdomains created with
226273ff1848SBarry Smith   `DMCreateDomainDecomposition()`
2263e30e807fSPeter Brune 
226420f4b53cSBarry Smith   Not Collective
2265e30e807fSPeter Brune 
2266e30e807fSPeter Brune   Input Parameters:
2267bb7acecfSBarry Smith + dm     - the `DM` object
226873ff1848SBarry Smith . n      - the number of subdomains
2269e30e807fSPeter Brune - subdms - the local subdomains
2270e30e807fSPeter Brune 
2271e30e807fSPeter Brune   Output Parameters:
22726b867d5aSJose E. Roman + iscat - scatter from global vector to nonoverlapping global vector entries on subdomain
2273e30e807fSPeter Brune . oscat - scatter from global vector to overlapping global vector entries on subdomain
2274e30e807fSPeter Brune - gscat - scatter from global vector to local vector on subdomain (fills in ghosts)
2275e30e807fSPeter Brune 
227620f4b53cSBarry Smith   Level: developer
227720f4b53cSBarry Smith 
2278bb7acecfSBarry Smith   Note:
2279bb7acecfSBarry Smith   This is an alternative to the iis and ois arguments in `DMCreateDomainDecomposition()` that allow for the solution
2280e30e807fSPeter Brune   of general nonlinear problems with overlapping subdomain methods.  While merely having index sets that enable subsets
2281e30e807fSPeter Brune   of the residual equations to be created is fine for linear problems, nonlinear problems require local assembly of
2282e30e807fSPeter Brune   solution and residual data.
2283e30e807fSPeter Brune 
228473ff1848SBarry Smith   Developer Note:
2285a4e35b19SJacob Faibussowitsch   Can the subdms input be anything or are they exactly the `DM` obtained from
2286a4e35b19SJacob Faibussowitsch   `DMCreateDomainDecomposition()`?
2287bb7acecfSBarry Smith 
22881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`
2289e30e807fSPeter Brune @*/
22905d83a8b1SBarry Smith PetscErrorCode DMCreateDomainDecompositionScatters(DM dm, PetscInt n, DM *subdms, VecScatter *iscat[], VecScatter *oscat[], VecScatter *gscat[])
2291d71ae5a4SJacob Faibussowitsch {
2292e30e807fSPeter Brune   PetscFunctionBegin;
2293e30e807fSPeter Brune   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
22944f572ea9SToby Isaac   PetscAssertPointer(subdms, 3);
2295dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createddscatters, n, subdms, iscat, oscat, gscat);
22963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2297e7c4fc90SDmitry Karpeev }
2298e7c4fc90SDmitry Karpeev 
229947c6ae99SBarry Smith /*@
2300bb7acecfSBarry Smith   DMRefine - Refines a `DM` object using a standard nonadaptive refinement of the underlying mesh
230147c6ae99SBarry Smith 
230220f4b53cSBarry Smith   Collective
230347c6ae99SBarry Smith 
2304d8d19677SJose E. Roman   Input Parameters:
2305bb7acecfSBarry Smith + dm   - the `DM` object
2306bb7acecfSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`)
230747c6ae99SBarry Smith 
230847c6ae99SBarry Smith   Output Parameter:
230920f4b53cSBarry Smith . dmf - the refined `DM`, or `NULL`
2310ae0a1c52SMatthew G Knepley 
231120f4b53cSBarry Smith   Options Database Key:
2312412e9a14SMatthew G. Knepley . -dm_plex_cell_refiner <strategy> - chooses the refinement strategy, e.g. regular, tohex
2313412e9a14SMatthew G. Knepley 
231447c6ae99SBarry Smith   Level: developer
231547c6ae99SBarry Smith 
231620f4b53cSBarry Smith   Note:
231720f4b53cSBarry Smith   If no refinement was done, the return value is `NULL`
231820f4b53cSBarry Smith 
231973ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`,
232073ff1848SBarry Smith           `DMRefineHookAdd()`, `DMRefineHookRemove()`
232147c6ae99SBarry Smith @*/
2322d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefine(DM dm, MPI_Comm comm, DM *dmf)
2323d71ae5a4SJacob Faibussowitsch {
2324c833c3b5SJed Brown   DMRefineHookLink link;
232547c6ae99SBarry Smith 
232647c6ae99SBarry Smith   PetscFunctionBegin;
2327732e2eb9SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
23289566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_Refine, dm, 0, 0, 0));
2329dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, refine, comm, dmf);
23304057135bSMatthew G Knepley   if (*dmf) {
233143842a1eSJed Brown     (*dmf)->ops->creatematrix = dm->ops->creatematrix;
23328865f1eaSKarl Rupp 
23339566063dSJacob Faibussowitsch     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmf));
23348865f1eaSKarl Rupp 
2335644e2e5bSBarry Smith     (*dmf)->ctx       = dm->ctx;
23360598a293SJed Brown     (*dmf)->leveldown = dm->leveldown;
2337656b349aSBarry Smith     (*dmf)->levelup   = dm->levelup + 1;
23388865f1eaSKarl Rupp 
23399566063dSJacob Faibussowitsch     PetscCall(DMSetMatType(*dmf, dm->mattype));
2340c833c3b5SJed Brown     for (link = dm->refinehook; link; link = link->next) {
23411baa6e33SBarry Smith       if (link->refinehook) PetscCall((*link->refinehook)(dm, *dmf, link->ctx));
2342c833c3b5SJed Brown     }
2343c833c3b5SJed Brown   }
23449566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_Refine, dm, 0, 0, 0));
23453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2346c833c3b5SJed Brown }
2347c833c3b5SJed Brown 
2348bb9467b5SJed Brown /*@C
2349c833c3b5SJed Brown   DMRefineHookAdd - adds a callback to be run when interpolating a nonlinear problem to a finer grid
2350c833c3b5SJed Brown 
235120f4b53cSBarry Smith   Logically Collective; No Fortran Support
2352c833c3b5SJed Brown 
23534165533cSJose E. Roman   Input Parameters:
2354bb7acecfSBarry Smith + coarse     - `DM` on which to run a hook when interpolating to a finer level
2355bb7acecfSBarry Smith . refinehook - function to run when setting up the finer level
2356f826b5fcSPierre Jolivet . interphook - function to run to update data on finer levels (once per `SNESSolve()`)
235720f4b53cSBarry Smith - ctx        - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2358c833c3b5SJed Brown 
235920f4b53cSBarry Smith   Calling sequence of `refinehook`:
2360bb7acecfSBarry Smith + coarse - coarse level `DM`
2361bb7acecfSBarry Smith . fine   - fine level `DM` to interpolate problem to
2362c833c3b5SJed Brown - ctx    - optional user-defined function context
2363c833c3b5SJed Brown 
236420f4b53cSBarry Smith   Calling sequence of `interphook`:
2365bb7acecfSBarry Smith + coarse - coarse level `DM`
2366c833c3b5SJed Brown . interp - matrix interpolating a coarse-level solution to the finer grid
2367bb7acecfSBarry Smith . fine   - fine level `DM` to update
2368c833c3b5SJed Brown - ctx    - optional user-defined function context
2369c833c3b5SJed Brown 
2370c833c3b5SJed Brown   Level: advanced
2371c833c3b5SJed Brown 
2372c833c3b5SJed Brown   Notes:
2373bb7acecfSBarry Smith   This function is only needed if auxiliary data that is attached to the `DM`s via, for example, `PetscObjectCompose()`, needs to be
2374bb7acecfSBarry Smith   passed to fine grids while grid sequencing.
2375bb7acecfSBarry Smith 
2376bb7acecfSBarry Smith   The actual interpolation is done when `DMInterpolate()` is called.
2377c833c3b5SJed Brown 
2378c833c3b5SJed Brown   If this function is called multiple times, the hooks will be run in the order they are added.
2379c833c3b5SJed Brown 
23801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2381c833c3b5SJed Brown @*/
2382a4e35b19SJacob Faibussowitsch PetscErrorCode DMRefineHookAdd(DM coarse, PetscErrorCode (*refinehook)(DM coarse, DM fine, void *ctx), PetscErrorCode (*interphook)(DM coarse, Mat interp, DM fine, void *ctx), void *ctx)
2383d71ae5a4SJacob Faibussowitsch {
2384c833c3b5SJed Brown   DMRefineHookLink link, *p;
2385c833c3b5SJed Brown 
2386c833c3b5SJed Brown   PetscFunctionBegin;
2387c833c3b5SJed Brown   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
23883d8e3701SJed Brown   for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
23893ba16761SJacob Faibussowitsch     if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
23903d8e3701SJed Brown   }
23919566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
2392c833c3b5SJed Brown   link->refinehook = refinehook;
2393c833c3b5SJed Brown   link->interphook = interphook;
2394c833c3b5SJed Brown   link->ctx        = ctx;
23950298fd71SBarry Smith   link->next       = NULL;
2396c833c3b5SJed Brown   *p               = link;
23973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2398c833c3b5SJed Brown }
2399c833c3b5SJed Brown 
24003d8e3701SJed Brown /*@C
2401bb7acecfSBarry Smith   DMRefineHookRemove - remove a callback from the list of hooks, that have been set with `DMRefineHookAdd()`, to be run when interpolating
2402bb7acecfSBarry Smith   a nonlinear problem to a finer grid
24033d8e3701SJed Brown 
240420f4b53cSBarry Smith   Logically Collective; No Fortran Support
24053d8e3701SJed Brown 
24064165533cSJose E. Roman   Input Parameters:
2407bb7acecfSBarry Smith + coarse     - the `DM` on which to run a hook when restricting to a coarser level
2408bb7acecfSBarry Smith . refinehook - function to run when setting up a finer level
2409bb7acecfSBarry Smith . interphook - function to run to update data on finer levels
241020f4b53cSBarry Smith - ctx        - [optional] user-defined context for provide data for the hooks (may be `NULL`)
24113d8e3701SJed Brown 
24123d8e3701SJed Brown   Level: advanced
24133d8e3701SJed Brown 
2414bb7acecfSBarry Smith   Note:
24153d8e3701SJed Brown   This function does nothing if the hook is not in the list.
24163d8e3701SJed Brown 
24171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `DMCoarsenHookRemove()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
24183d8e3701SJed Brown @*/
2419d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookRemove(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx)
2420d71ae5a4SJacob Faibussowitsch {
24213d8e3701SJed Brown   DMRefineHookLink link, *p;
24223d8e3701SJed Brown 
24233d8e3701SJed Brown   PetscFunctionBegin;
24243d8e3701SJed Brown   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
24253d8e3701SJed Brown   for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Search the list of current hooks */
24263d8e3701SJed Brown     if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) {
24273d8e3701SJed Brown       link = *p;
24283d8e3701SJed Brown       *p   = link->next;
24299566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
24303d8e3701SJed Brown       break;
24313d8e3701SJed Brown     }
24323d8e3701SJed Brown   }
24333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24343d8e3701SJed Brown }
24353d8e3701SJed Brown 
2436c833c3b5SJed Brown /*@
2437bb7acecfSBarry Smith   DMInterpolate - interpolates user-defined problem data attached to a `DM` to a finer `DM` by running hooks registered by `DMRefineHookAdd()`
2438c833c3b5SJed Brown 
2439c833c3b5SJed Brown   Collective if any hooks are
2440c833c3b5SJed Brown 
24414165533cSJose E. Roman   Input Parameters:
2442bb7acecfSBarry Smith + coarse - coarser `DM` to use as a base
2443bb7acecfSBarry Smith . interp - interpolation matrix, apply using `MatInterpolate()`
2444bb7acecfSBarry Smith - fine   - finer `DM` to update
2445c833c3b5SJed Brown 
2446c833c3b5SJed Brown   Level: developer
2447c833c3b5SJed Brown 
244873ff1848SBarry Smith   Developer Note:
2449bb7acecfSBarry Smith   This routine is called `DMInterpolate()` while the hook is called `DMRefineHookAdd()`. It would be better to have an
2450bb7acecfSBarry Smith   an API with consistent terminology.
2451bb7acecfSBarry Smith 
24521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `MatInterpolate()`
2453c833c3b5SJed Brown @*/
2454d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolate(DM coarse, Mat interp, DM fine)
2455d71ae5a4SJacob Faibussowitsch {
2456c833c3b5SJed Brown   DMRefineHookLink link;
2457c833c3b5SJed Brown 
2458c833c3b5SJed Brown   PetscFunctionBegin;
2459c833c3b5SJed Brown   for (link = fine->refinehook; link; link = link->next) {
24601baa6e33SBarry Smith     if (link->interphook) PetscCall((*link->interphook)(coarse, interp, fine, link->ctx));
24614057135bSMatthew G Knepley   }
24623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
246347c6ae99SBarry Smith }
246447c6ae99SBarry Smith 
2465eb3f98d2SBarry Smith /*@
24661f3379b2SToby Isaac   DMInterpolateSolution - Interpolates a solution from a coarse mesh to a fine mesh.
24671f3379b2SToby Isaac 
246820f4b53cSBarry Smith   Collective
24691f3379b2SToby Isaac 
24704165533cSJose E. Roman   Input Parameters:
2471bb7acecfSBarry Smith + coarse    - coarse `DM`
2472bb7acecfSBarry Smith . fine      - fine `DM`
2473bb7acecfSBarry Smith . interp    - (optional) the matrix computed by `DMCreateInterpolation()`.  Implementations may not need this, but if it
2474bb7acecfSBarry Smith             is available it can avoid some recomputation.  If it is provided, `MatInterpolate()` will be used if
2475bb7acecfSBarry Smith             the coarse `DM` does not have a specialized implementation.
24761f3379b2SToby Isaac - coarseSol - solution on the coarse mesh
24771f3379b2SToby Isaac 
24784165533cSJose E. Roman   Output Parameter:
24791f3379b2SToby Isaac . fineSol - the interpolation of coarseSol to the fine mesh
24801f3379b2SToby Isaac 
24811f3379b2SToby Isaac   Level: developer
24821f3379b2SToby Isaac 
2483bb7acecfSBarry Smith   Note:
2484bb7acecfSBarry Smith   This function exists because the interpolation of a solution vector between meshes is not always a linear
24851f3379b2SToby Isaac   map.  For example, if a boundary value problem has an inhomogeneous Dirichlet boundary condition that is compressed
24861f3379b2SToby Isaac   out of the solution vector.  Or if interpolation is inherently a nonlinear operation, such as a method using
24871f3379b2SToby Isaac   slope-limiting reconstruction.
24881f3379b2SToby Isaac 
248973ff1848SBarry Smith   Developer Note:
2490bb7acecfSBarry Smith   This doesn't just interpolate "solutions" so its API name is questionable.
2491bb7acecfSBarry Smith 
24921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMInterpolate()`, `DMCreateInterpolation()`
24931f3379b2SToby Isaac @*/
2494d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolateSolution(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol)
2495d71ae5a4SJacob Faibussowitsch {
24961f3379b2SToby Isaac   PetscErrorCode (*interpsol)(DM, DM, Mat, Vec, Vec) = NULL;
24971f3379b2SToby Isaac 
24981f3379b2SToby Isaac   PetscFunctionBegin;
24991f3379b2SToby Isaac   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
25001f3379b2SToby Isaac   if (interp) PetscValidHeaderSpecific(interp, MAT_CLASSID, 3);
25011f3379b2SToby Isaac   PetscValidHeaderSpecific(coarseSol, VEC_CLASSID, 4);
25021f3379b2SToby Isaac   PetscValidHeaderSpecific(fineSol, VEC_CLASSID, 5);
25031f3379b2SToby Isaac 
25049566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)coarse, "DMInterpolateSolution_C", &interpsol));
25051f3379b2SToby Isaac   if (interpsol) {
25069566063dSJacob Faibussowitsch     PetscCall((*interpsol)(coarse, fine, interp, coarseSol, fineSol));
25071f3379b2SToby Isaac   } else if (interp) {
25089566063dSJacob Faibussowitsch     PetscCall(MatInterpolate(interp, coarseSol, fineSol));
250998921bdaSJacob Faibussowitsch   } else SETERRQ(PetscObjectComm((PetscObject)coarse), PETSC_ERR_SUP, "DM %s does not implement DMInterpolateSolution()", ((PetscObject)coarse)->type_name);
25103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25111f3379b2SToby Isaac }
25121f3379b2SToby Isaac 
25131f3379b2SToby Isaac /*@
2514bb7acecfSBarry Smith   DMGetRefineLevel - Gets the number of refinements that have generated this `DM` from some initial `DM`.
2515eb3f98d2SBarry Smith 
2516eb3f98d2SBarry Smith   Not Collective
2517eb3f98d2SBarry Smith 
2518eb3f98d2SBarry Smith   Input Parameter:
2519bb7acecfSBarry Smith . dm - the `DM` object
2520eb3f98d2SBarry Smith 
2521eb3f98d2SBarry Smith   Output Parameter:
2522eb3f98d2SBarry Smith . level - number of refinements
2523eb3f98d2SBarry Smith 
2524eb3f98d2SBarry Smith   Level: developer
2525eb3f98d2SBarry Smith 
2526bb7acecfSBarry Smith   Note:
2527bb7acecfSBarry Smith   This can be used, by example, to set the number of coarser levels associated with this `DM` for a multigrid solver.
2528bb7acecfSBarry Smith 
25291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
2530eb3f98d2SBarry Smith @*/
2531d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRefineLevel(DM dm, PetscInt *level)
2532d71ae5a4SJacob Faibussowitsch {
2533eb3f98d2SBarry Smith   PetscFunctionBegin;
2534eb3f98d2SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2535eb3f98d2SBarry Smith   *level = dm->levelup;
25363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2537eb3f98d2SBarry Smith }
2538eb3f98d2SBarry Smith 
2539fef3a512SBarry Smith /*@
2540bb7acecfSBarry Smith   DMSetRefineLevel - Sets the number of refinements that have generated this `DM`.
2541fef3a512SBarry Smith 
2542fef3a512SBarry Smith   Not Collective
2543fef3a512SBarry Smith 
2544d8d19677SJose E. Roman   Input Parameters:
2545bb7acecfSBarry Smith + dm    - the `DM` object
2546fef3a512SBarry Smith - level - number of refinements
2547fef3a512SBarry Smith 
2548fef3a512SBarry Smith   Level: advanced
2549fef3a512SBarry Smith 
255095452b02SPatrick Sanan   Notes:
2551bb7acecfSBarry Smith   This value is used by `PCMG` to determine how many multigrid levels to use
2552fef3a512SBarry Smith 
2553bb7acecfSBarry Smith   The values are usually set automatically by the process that is causing the refinements of an initial `DM` by calling this routine.
2554bb7acecfSBarry Smith 
25551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRefineLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
2556fef3a512SBarry Smith @*/
2557d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRefineLevel(DM dm, PetscInt level)
2558d71ae5a4SJacob Faibussowitsch {
2559fef3a512SBarry Smith   PetscFunctionBegin;
2560fef3a512SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2561fef3a512SBarry Smith   dm->levelup = level;
25623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2563fef3a512SBarry Smith }
2564fef3a512SBarry Smith 
2565d410b0cfSMatthew G. Knepley /*@
2566bb7acecfSBarry Smith   DMExtrude - Extrude a `DM` object from a surface
2567d410b0cfSMatthew G. Knepley 
256820f4b53cSBarry Smith   Collective
2569d410b0cfSMatthew G. Knepley 
2570f1a722f8SMatthew G. Knepley   Input Parameters:
2571bb7acecfSBarry Smith + dm     - the `DM` object
2572d410b0cfSMatthew G. Knepley - layers - the number of extruded cell layers
2573d410b0cfSMatthew G. Knepley 
2574d410b0cfSMatthew G. Knepley   Output Parameter:
257520f4b53cSBarry Smith . dme - the extruded `DM`, or `NULL`
2576d410b0cfSMatthew G. Knepley 
2577d410b0cfSMatthew G. Knepley   Level: developer
2578d410b0cfSMatthew G. Knepley 
257920f4b53cSBarry Smith   Note:
258020f4b53cSBarry Smith   If no extrusion was done, the return value is `NULL`
258120f4b53cSBarry Smith 
25821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`
2583d410b0cfSMatthew G. Knepley @*/
2584d71ae5a4SJacob Faibussowitsch PetscErrorCode DMExtrude(DM dm, PetscInt layers, DM *dme)
2585d71ae5a4SJacob Faibussowitsch {
2586d410b0cfSMatthew G. Knepley   PetscFunctionBegin;
2587d410b0cfSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2588dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, extrude, layers, dme);
2589d410b0cfSMatthew G. Knepley   if (*dme) {
2590d410b0cfSMatthew G. Knepley     (*dme)->ops->creatematrix = dm->ops->creatematrix;
25919566063dSJacob Faibussowitsch     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dme));
2592d410b0cfSMatthew G. Knepley     (*dme)->ctx = dm->ctx;
25939566063dSJacob Faibussowitsch     PetscCall(DMSetMatType(*dme, dm->mattype));
2594d410b0cfSMatthew G. Knepley   }
25953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2596d410b0cfSMatthew G. Knepley }
2597d410b0cfSMatthew G. Knepley 
2598d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformDM_Internal(DM dm, DM *tdm)
2599d71ae5a4SJacob Faibussowitsch {
2600ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2601ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
26024f572ea9SToby Isaac   PetscAssertPointer(tdm, 2);
2603ca3d3a14SMatthew G. Knepley   *tdm = dm->transformDM;
26043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2605ca3d3a14SMatthew G. Knepley }
2606ca3d3a14SMatthew G. Knepley 
2607d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformVec_Internal(DM dm, Vec *tv)
2608d71ae5a4SJacob Faibussowitsch {
2609ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2610ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
26114f572ea9SToby Isaac   PetscAssertPointer(tv, 2);
2612ca3d3a14SMatthew G. Knepley   *tv = dm->transform;
26133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2614ca3d3a14SMatthew G. Knepley }
2615ca3d3a14SMatthew G. Knepley 
2616ca3d3a14SMatthew G. Knepley /*@
2617bb7acecfSBarry Smith   DMHasBasisTransform - Whether the `DM` employs a basis transformation from functions in global vectors to functions in local vectors
2618ca3d3a14SMatthew G. Knepley 
2619ca3d3a14SMatthew G. Knepley   Input Parameter:
262020f4b53cSBarry Smith . dm - The `DM`
2621ca3d3a14SMatthew G. Knepley 
2622ca3d3a14SMatthew G. Knepley   Output Parameter:
262320f4b53cSBarry Smith . flg - `PETSC_TRUE` if a basis transformation should be done
2624ca3d3a14SMatthew G. Knepley 
2625ca3d3a14SMatthew G. Knepley   Level: developer
2626ca3d3a14SMatthew G. Knepley 
26271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`, `DMPlexCreateBasisRotation()`
2628ca3d3a14SMatthew G. Knepley @*/
2629d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasBasisTransform(DM dm, PetscBool *flg)
2630d71ae5a4SJacob Faibussowitsch {
2631ca3d3a14SMatthew G. Knepley   Vec tv;
2632ca3d3a14SMatthew G. Knepley 
2633ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2634ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
26354f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
26369566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
2637ca3d3a14SMatthew G. Knepley   *flg = tv ? PETSC_TRUE : PETSC_FALSE;
26383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2639ca3d3a14SMatthew G. Knepley }
2640ca3d3a14SMatthew G. Knepley 
2641d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConstructBasisTransform_Internal(DM dm)
2642d71ae5a4SJacob Faibussowitsch {
2643ca3d3a14SMatthew G. Knepley   PetscSection s, ts;
2644ca3d3a14SMatthew G. Knepley   PetscScalar *ta;
2645ca3d3a14SMatthew G. Knepley   PetscInt     cdim, pStart, pEnd, p, Nf, f, Nc, dof;
2646ca3d3a14SMatthew G. Knepley 
2647ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
26489566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
26499566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
26509566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
26519566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
26529566063dSJacob Faibussowitsch   PetscCall(DMClone(dm, &dm->transformDM));
26539566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm->transformDM, &ts));
26549566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetNumFields(ts, Nf));
26559566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(ts, pStart, pEnd));
2656ca3d3a14SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
26579566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetFieldComponents(s, f, &Nc));
2658ca3d3a14SMatthew G. Knepley     /* We could start to label fields by their transformation properties */
2659ca3d3a14SMatthew G. Knepley     if (Nc != cdim) continue;
2660ca3d3a14SMatthew G. Knepley     for (p = pStart; p < pEnd; ++p) {
26619566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(s, p, f, &dof));
2662ca3d3a14SMatthew G. Knepley       if (!dof) continue;
26639566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetFieldDof(ts, p, f, PetscSqr(cdim)));
26649566063dSJacob Faibussowitsch       PetscCall(PetscSectionAddDof(ts, p, PetscSqr(cdim)));
2665ca3d3a14SMatthew G. Knepley     }
2666ca3d3a14SMatthew G. Knepley   }
26679566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(ts));
26689566063dSJacob Faibussowitsch   PetscCall(DMCreateLocalVector(dm->transformDM, &dm->transform));
26699566063dSJacob Faibussowitsch   PetscCall(VecGetArray(dm->transform, &ta));
2670ca3d3a14SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
2671ca3d3a14SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
26729566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof));
2673ca3d3a14SMatthew G. Knepley       if (dof) {
2674ca3d3a14SMatthew G. Knepley         PetscReal          x[3] = {0.0, 0.0, 0.0};
2675ca3d3a14SMatthew G. Knepley         PetscScalar       *tva;
2676ca3d3a14SMatthew G. Knepley         const PetscScalar *A;
2677ca3d3a14SMatthew G. Knepley 
2678ca3d3a14SMatthew G. Knepley         /* TODO Get quadrature point for this dual basis vector for coordinate */
26799566063dSJacob Faibussowitsch         PetscCall((*dm->transformGetMatrix)(dm, x, PETSC_TRUE, &A, dm->transformCtx));
26809566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRef(dm->transformDM, p, f, ta, (void *)&tva));
26819566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(tva, A, PetscSqr(cdim)));
2682ca3d3a14SMatthew G. Knepley       }
2683ca3d3a14SMatthew G. Knepley     }
2684ca3d3a14SMatthew G. Knepley   }
26859566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(dm->transform, &ta));
26863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2687ca3d3a14SMatthew G. Knepley }
2688ca3d3a14SMatthew G. Knepley 
2689d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyTransform(DM dm, DM newdm)
2690d71ae5a4SJacob Faibussowitsch {
2691ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2692ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2693ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(newdm, DM_CLASSID, 2);
2694ca3d3a14SMatthew G. Knepley   newdm->transformCtx       = dm->transformCtx;
2695ca3d3a14SMatthew G. Knepley   newdm->transformSetUp     = dm->transformSetUp;
2696ca3d3a14SMatthew G. Knepley   newdm->transformDestroy   = NULL;
2697ca3d3a14SMatthew G. Knepley   newdm->transformGetMatrix = dm->transformGetMatrix;
26989566063dSJacob Faibussowitsch   if (newdm->transformSetUp) PetscCall(DMConstructBasisTransform_Internal(newdm));
26993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2700ca3d3a14SMatthew G. Knepley }
2701ca3d3a14SMatthew G. Knepley 
2702bb9467b5SJed Brown /*@C
2703bb7acecfSBarry Smith   DMGlobalToLocalHookAdd - adds a callback to be run when `DMGlobalToLocal()` is called
2704baf369e7SPeter Brune 
270520f4b53cSBarry Smith   Logically Collective
2706baf369e7SPeter Brune 
27074165533cSJose E. Roman   Input Parameters:
2708bb7acecfSBarry Smith + dm        - the `DM`
2709bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMGlobalToLocalBegin()`
2710bb7acecfSBarry Smith . endhook   - function to run after `DMGlobalToLocalEnd()` has completed
271120f4b53cSBarry Smith - ctx       - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2712baf369e7SPeter Brune 
271320f4b53cSBarry Smith   Calling sequence of `beginhook`:
2714a4e35b19SJacob Faibussowitsch + dm   - global `DM`
2715baf369e7SPeter Brune . g    - global vector
2716baf369e7SPeter Brune . mode - mode
2717baf369e7SPeter Brune . l    - local vector
2718baf369e7SPeter Brune - ctx  - optional user-defined function context
2719baf369e7SPeter Brune 
272020f4b53cSBarry Smith   Calling sequence of `endhook`:
2721a4e35b19SJacob Faibussowitsch + dm   - global `DM`
2722a4e35b19SJacob Faibussowitsch . g    - global vector
2723a4e35b19SJacob Faibussowitsch . mode - mode
2724a4e35b19SJacob Faibussowitsch . l    - local vector
2725baf369e7SPeter Brune - ctx  - optional user-defined function context
2726baf369e7SPeter Brune 
2727baf369e7SPeter Brune   Level: advanced
2728baf369e7SPeter Brune 
2729bb7acecfSBarry Smith   Note:
2730bb7acecfSBarry Smith   The hook may be used to provide, for example, values that represent boundary conditions in the local vectors that do not exist on the global vector.
2731bb7acecfSBarry Smith 
27321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocal()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2733baf369e7SPeter Brune @*/
2734a4e35b19SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), PetscErrorCode (*endhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), void *ctx)
2735d71ae5a4SJacob Faibussowitsch {
2736baf369e7SPeter Brune   DMGlobalToLocalHookLink link, *p;
2737baf369e7SPeter Brune 
2738baf369e7SPeter Brune   PetscFunctionBegin;
2739baf369e7SPeter Brune   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2740baf369e7SPeter Brune   for (p = &dm->gtolhook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */
27419566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
2742baf369e7SPeter Brune   link->beginhook = beginhook;
2743baf369e7SPeter Brune   link->endhook   = endhook;
2744baf369e7SPeter Brune   link->ctx       = ctx;
27450298fd71SBarry Smith   link->next      = NULL;
2746baf369e7SPeter Brune   *p              = link;
27473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2748baf369e7SPeter Brune }
2749baf369e7SPeter Brune 
2750d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGlobalToLocalHook_Constraints(DM dm, Vec g, InsertMode mode, Vec l, void *ctx)
2751d71ae5a4SJacob Faibussowitsch {
27524c274da1SToby Isaac   Mat          cMat;
275379769bd5SJed Brown   Vec          cVec, cBias;
27544c274da1SToby Isaac   PetscSection section, cSec;
27554c274da1SToby Isaac   PetscInt     pStart, pEnd, p, dof;
27564c274da1SToby Isaac 
27574c274da1SToby Isaac   PetscFunctionBegin;
2758a4e35b19SJacob Faibussowitsch   (void)g;
2759a4e35b19SJacob Faibussowitsch   (void)ctx;
27604c274da1SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
27619566063dSJacob Faibussowitsch   PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, &cBias));
27624c274da1SToby Isaac   if (cMat && (mode == INSERT_VALUES || mode == INSERT_ALL_VALUES || mode == INSERT_BC_VALUES)) {
27635db9a05bSToby Isaac     PetscInt nRows;
27645db9a05bSToby Isaac 
27659566063dSJacob Faibussowitsch     PetscCall(MatGetSize(cMat, &nRows, NULL));
27663ba16761SJacob Faibussowitsch     if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS);
27679566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
27689566063dSJacob Faibussowitsch     PetscCall(MatCreateVecs(cMat, NULL, &cVec));
27699566063dSJacob Faibussowitsch     PetscCall(MatMult(cMat, l, cVec));
27709566063dSJacob Faibussowitsch     if (cBias) PetscCall(VecAXPY(cVec, 1., cBias));
27719566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd));
27724c274da1SToby Isaac     for (p = pStart; p < pEnd; p++) {
27739566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(cSec, p, &dof));
27744c274da1SToby Isaac       if (dof) {
27754c274da1SToby Isaac         PetscScalar *vals;
27769566063dSJacob Faibussowitsch         PetscCall(VecGetValuesSection(cVec, cSec, p, &vals));
27779566063dSJacob Faibussowitsch         PetscCall(VecSetValuesSection(l, section, p, vals, INSERT_ALL_VALUES));
27784c274da1SToby Isaac       }
27794c274da1SToby Isaac     }
27809566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&cVec));
27814c274da1SToby Isaac   }
27823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27834c274da1SToby Isaac }
27844c274da1SToby Isaac 
278547c6ae99SBarry Smith /*@
278601729b5cSPatrick Sanan   DMGlobalToLocal - update local vectors from global vector
278701729b5cSPatrick Sanan 
278820f4b53cSBarry Smith   Neighbor-wise Collective
278901729b5cSPatrick Sanan 
279001729b5cSPatrick Sanan   Input Parameters:
2791bb7acecfSBarry Smith + dm   - the `DM` object
279201729b5cSPatrick Sanan . g    - the global vector
2793bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES`
279401729b5cSPatrick Sanan - l    - the local vector
279501729b5cSPatrick Sanan 
279620f4b53cSBarry Smith   Level: beginner
279720f4b53cSBarry Smith 
279801729b5cSPatrick Sanan   Notes:
2799bb7acecfSBarry Smith   The communication involved in this update can be overlapped with computation by instead using
2800bb7acecfSBarry Smith   `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()`.
2801bb7acecfSBarry Smith 
2802bb7acecfSBarry Smith   `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process.
280301729b5cSPatrick Sanan 
28041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocalHookAdd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`,
280560225df5SJacob Faibussowitsch           `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`,
2806bb7acecfSBarry Smith           `DMGlobalToLocalBegin()` `DMGlobalToLocalEnd()`
280701729b5cSPatrick Sanan @*/
2808d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocal(DM dm, Vec g, InsertMode mode, Vec l)
2809d71ae5a4SJacob Faibussowitsch {
281001729b5cSPatrick Sanan   PetscFunctionBegin;
28119566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, g, mode, l));
28129566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, g, mode, l));
28133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
281401729b5cSPatrick Sanan }
281501729b5cSPatrick Sanan 
281601729b5cSPatrick Sanan /*@
281747c6ae99SBarry Smith   DMGlobalToLocalBegin - Begins updating local vectors from global vector
281847c6ae99SBarry Smith 
281920f4b53cSBarry Smith   Neighbor-wise Collective
282047c6ae99SBarry Smith 
282147c6ae99SBarry Smith   Input Parameters:
2822bb7acecfSBarry Smith + dm   - the `DM` object
282347c6ae99SBarry Smith . g    - the global vector
2824bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES`
282547c6ae99SBarry Smith - l    - the local vector
282647c6ae99SBarry Smith 
282701729b5cSPatrick Sanan   Level: intermediate
282847c6ae99SBarry Smith 
2829bb7acecfSBarry Smith   Notes:
2830bb7acecfSBarry Smith   The operation is completed with `DMGlobalToLocalEnd()`
2831bb7acecfSBarry Smith 
2832bb7acecfSBarry Smith   One can perform local computations between the `DMGlobalToLocalBegin()` and  `DMGlobalToLocalEnd()` to overlap communication and computation
2833bb7acecfSBarry Smith 
2834bb7acecfSBarry Smith   `DMGlobalToLocal()` is a short form of  `DMGlobalToLocalBegin()` and  `DMGlobalToLocalEnd()`
2835bb7acecfSBarry Smith 
2836bb7acecfSBarry Smith   `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process.
2837bb7acecfSBarry Smith 
283860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`
283947c6ae99SBarry Smith @*/
2840d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l)
2841d71ae5a4SJacob Faibussowitsch {
28427128ae9fSMatthew G Knepley   PetscSF                 sf;
2843baf369e7SPeter Brune   DMGlobalToLocalHookLink link;
284447c6ae99SBarry Smith 
284547c6ae99SBarry Smith   PetscFunctionBegin;
2846171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2847baf369e7SPeter Brune   for (link = dm->gtolhook; link; link = link->next) {
28481baa6e33SBarry Smith     if (link->beginhook) PetscCall((*link->beginhook)(dm, g, mode, l, link->ctx));
2849baf369e7SPeter Brune   }
28509566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
28517128ae9fSMatthew G Knepley   if (sf) {
2852ae5cfb4aSMatthew G. Knepley     const PetscScalar *gArray;
2853ae5cfb4aSMatthew G. Knepley     PetscScalar       *lArray;
2854d0295fc0SJunchao Zhang     PetscMemType       lmtype, gmtype;
28557128ae9fSMatthew G Knepley 
28567a8be351SBarry Smith     PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode);
28579566063dSJacob Faibussowitsch     PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype));
28589566063dSJacob Faibussowitsch     PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype));
28599566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastWithMemTypeBegin(sf, MPIU_SCALAR, gmtype, gArray, lmtype, lArray, MPI_REPLACE));
28609566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayAndMemType(l, &lArray));
28619566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayReadAndMemType(g, &gArray));
28627128ae9fSMatthew G Knepley   } else {
2863fa1e479aSStefano Zampini     PetscUseTypeMethod(dm, globaltolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
28647128ae9fSMatthew G Knepley   }
28653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
286647c6ae99SBarry Smith }
286747c6ae99SBarry Smith 
286847c6ae99SBarry Smith /*@
286947c6ae99SBarry Smith   DMGlobalToLocalEnd - Ends updating local vectors from global vector
287047c6ae99SBarry Smith 
287120f4b53cSBarry Smith   Neighbor-wise Collective
287247c6ae99SBarry Smith 
287347c6ae99SBarry Smith   Input Parameters:
2874bb7acecfSBarry Smith + dm   - the `DM` object
287547c6ae99SBarry Smith . g    - the global vector
2876bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES`
287747c6ae99SBarry Smith - l    - the local vector
287847c6ae99SBarry Smith 
287901729b5cSPatrick Sanan   Level: intermediate
288047c6ae99SBarry Smith 
2881bb7acecfSBarry Smith   Note:
2882bb7acecfSBarry Smith   See `DMGlobalToLocalBegin()` for details.
2883bb7acecfSBarry Smith 
288460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`
288547c6ae99SBarry Smith @*/
2886d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l)
2887d71ae5a4SJacob Faibussowitsch {
28887128ae9fSMatthew G Knepley   PetscSF                 sf;
2889ae5cfb4aSMatthew G. Knepley   const PetscScalar      *gArray;
2890ae5cfb4aSMatthew G. Knepley   PetscScalar            *lArray;
2891ca3d3a14SMatthew G. Knepley   PetscBool               transform;
2892baf369e7SPeter Brune   DMGlobalToLocalHookLink link;
2893d0295fc0SJunchao Zhang   PetscMemType            lmtype, gmtype;
289447c6ae99SBarry Smith 
289547c6ae99SBarry Smith   PetscFunctionBegin;
2896171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
28979566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
28989566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
28997128ae9fSMatthew G Knepley   if (sf) {
29007a8be351SBarry Smith     PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode);
29017128ae9fSMatthew G Knepley 
29029566063dSJacob Faibussowitsch     PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype));
29039566063dSJacob Faibussowitsch     PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype));
29049566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, gArray, lArray, MPI_REPLACE));
29059566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayAndMemType(l, &lArray));
29069566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayReadAndMemType(g, &gArray));
29079566063dSJacob Faibussowitsch     if (transform) PetscCall(DMPlexGlobalToLocalBasis(dm, l));
29087128ae9fSMatthew G Knepley   } else {
2909fa1e479aSStefano Zampini     PetscUseTypeMethod(dm, globaltolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
29107128ae9fSMatthew G Knepley   }
29119566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalHook_Constraints(dm, g, mode, l, NULL));
2912baf369e7SPeter Brune   for (link = dm->gtolhook; link; link = link->next) {
29139566063dSJacob Faibussowitsch     if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx));
2914baf369e7SPeter Brune   }
29153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
291647c6ae99SBarry Smith }
291747c6ae99SBarry Smith 
2918d4d07f1eSToby Isaac /*@C
2919d4d07f1eSToby Isaac   DMLocalToGlobalHookAdd - adds a callback to be run when a local to global is called
2920d4d07f1eSToby Isaac 
292120f4b53cSBarry Smith   Logically Collective
2922d4d07f1eSToby Isaac 
29234165533cSJose E. Roman   Input Parameters:
2924bb7acecfSBarry Smith + dm        - the `DM`
2925bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMLocalToGlobalBegin()`
2926bb7acecfSBarry Smith . endhook   - function to run after `DMLocalToGlobalEnd()` has completed
292720f4b53cSBarry Smith - ctx       - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2928d4d07f1eSToby Isaac 
292920f4b53cSBarry Smith   Calling sequence of `beginhook`:
2930a4e35b19SJacob Faibussowitsch + global - global `DM`
2931d4d07f1eSToby Isaac . l      - local vector
2932d4d07f1eSToby Isaac . mode   - mode
2933d4d07f1eSToby Isaac . g      - global vector
2934d4d07f1eSToby Isaac - ctx    - optional user-defined function context
2935d4d07f1eSToby Isaac 
293620f4b53cSBarry Smith   Calling sequence of `endhook`:
2937bb7acecfSBarry Smith + global - global `DM`
2938d4d07f1eSToby Isaac . l      - local vector
2939d4d07f1eSToby Isaac . mode   - mode
2940d4d07f1eSToby Isaac . g      - global vector
2941d4d07f1eSToby Isaac - ctx    - optional user-defined function context
2942d4d07f1eSToby Isaac 
2943d4d07f1eSToby Isaac   Level: advanced
2944d4d07f1eSToby Isaac 
29451cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMRefineHookAdd()`, `DMGlobalToLocalHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2946d4d07f1eSToby Isaac @*/
2947a4e35b19SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), PetscErrorCode (*endhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), void *ctx)
2948d71ae5a4SJacob Faibussowitsch {
2949d4d07f1eSToby Isaac   DMLocalToGlobalHookLink link, *p;
2950d4d07f1eSToby Isaac 
2951d4d07f1eSToby Isaac   PetscFunctionBegin;
2952d4d07f1eSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2953d4d07f1eSToby Isaac   for (p = &dm->ltoghook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */
29549566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
2955d4d07f1eSToby Isaac   link->beginhook = beginhook;
2956d4d07f1eSToby Isaac   link->endhook   = endhook;
2957d4d07f1eSToby Isaac   link->ctx       = ctx;
2958d4d07f1eSToby Isaac   link->next      = NULL;
2959d4d07f1eSToby Isaac   *p              = link;
29603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2961d4d07f1eSToby Isaac }
2962d4d07f1eSToby Isaac 
2963d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMLocalToGlobalHook_Constraints(DM dm, Vec l, InsertMode mode, Vec g, void *ctx)
2964d71ae5a4SJacob Faibussowitsch {
29654c274da1SToby Isaac   PetscFunctionBegin;
2966a4e35b19SJacob Faibussowitsch   (void)g;
2967a4e35b19SJacob Faibussowitsch   (void)ctx;
29684c274da1SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
29692b6b7d09SToby Isaac   if (mode == ADD_VALUES || mode == ADD_ALL_VALUES || mode == ADD_BC_VALUES) {
29702b6b7d09SToby Isaac     Mat          cMat;
29712b6b7d09SToby Isaac     Vec          cVec;
29725db9a05bSToby Isaac     PetscInt     nRows;
29732b6b7d09SToby Isaac     PetscSection section, cSec;
29742b6b7d09SToby Isaac     PetscInt     pStart, pEnd, p, dof;
29752b6b7d09SToby Isaac 
29762b6b7d09SToby Isaac     PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, NULL));
29772b6b7d09SToby Isaac     if (!cMat) PetscFunctionReturn(PETSC_SUCCESS);
29785db9a05bSToby Isaac 
29799566063dSJacob Faibussowitsch     PetscCall(MatGetSize(cMat, &nRows, NULL));
29803ba16761SJacob Faibussowitsch     if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS);
29819566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
29829566063dSJacob Faibussowitsch     PetscCall(MatCreateVecs(cMat, NULL, &cVec));
29839566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd));
29844c274da1SToby Isaac     for (p = pStart; p < pEnd; p++) {
29859566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(cSec, p, &dof));
29864c274da1SToby Isaac       if (dof) {
29874c274da1SToby Isaac         PetscInt     d;
29884c274da1SToby Isaac         PetscScalar *vals;
29899566063dSJacob Faibussowitsch         PetscCall(VecGetValuesSection(l, section, p, &vals));
29909566063dSJacob Faibussowitsch         PetscCall(VecSetValuesSection(cVec, cSec, p, vals, mode));
29914c274da1SToby Isaac         /* for this to be the true transpose, we have to zero the values that
29924c274da1SToby Isaac          * we just extracted */
2993ad540459SPierre Jolivet         for (d = 0; d < dof; d++) vals[d] = 0.;
29944c274da1SToby Isaac       }
29954c274da1SToby Isaac     }
29969566063dSJacob Faibussowitsch     PetscCall(MatMultTransposeAdd(cMat, cVec, l, l));
29979566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&cVec));
29984c274da1SToby Isaac   }
29993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30004c274da1SToby Isaac }
300101729b5cSPatrick Sanan /*@
300201729b5cSPatrick Sanan   DMLocalToGlobal - updates global vectors from local vectors
300301729b5cSPatrick Sanan 
300420f4b53cSBarry Smith   Neighbor-wise Collective
300501729b5cSPatrick Sanan 
300601729b5cSPatrick Sanan   Input Parameters:
3007bb7acecfSBarry Smith + dm   - the `DM` object
300801729b5cSPatrick Sanan . l    - the local vector
3009bb7acecfSBarry Smith . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point.
301001729b5cSPatrick Sanan - g    - the global vector
301101729b5cSPatrick Sanan 
301220f4b53cSBarry Smith   Level: beginner
301320f4b53cSBarry Smith 
301401729b5cSPatrick Sanan   Notes:
301501729b5cSPatrick Sanan   The communication involved in this update can be overlapped with computation by using
3016bb7acecfSBarry Smith   `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()`.
301701729b5cSPatrick Sanan 
3018bb7acecfSBarry Smith   In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation.
3019bb7acecfSBarry Smith 
3020bb7acecfSBarry Smith   `INSERT_VALUES` is not supported for `DMDA`; in that case simply compute the values directly into a global vector instead of a local one.
3021bb7acecfSBarry Smith 
3022bb7acecfSBarry Smith   Use `DMLocalToGlobalHookAdd()` to add additional operations that are performed on the data during the update process
302301729b5cSPatrick Sanan 
30241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`, `DMLocalToGlobalHookAdd()`, `DMGlobaToLocallHookAdd()`
302501729b5cSPatrick Sanan @*/
3026d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobal(DM dm, Vec l, InsertMode mode, Vec g)
3027d71ae5a4SJacob Faibussowitsch {
302801729b5cSPatrick Sanan   PetscFunctionBegin;
30299566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalBegin(dm, l, mode, g));
30309566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalEnd(dm, l, mode, g));
30313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
303201729b5cSPatrick Sanan }
30334c274da1SToby Isaac 
303447c6ae99SBarry Smith /*@
303501729b5cSPatrick Sanan   DMLocalToGlobalBegin - begins updating global vectors from local vectors
30369a42bb27SBarry Smith 
303720f4b53cSBarry Smith   Neighbor-wise Collective
30389a42bb27SBarry Smith 
30399a42bb27SBarry Smith   Input Parameters:
3040bb7acecfSBarry Smith + dm   - the `DM` object
3041f6813fd5SJed Brown . l    - the local vector
3042aa624791SPierre Jolivet . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point.
30431eb28f2eSBarry Smith - g    - the global vector
30449a42bb27SBarry Smith 
304520f4b53cSBarry Smith   Level: intermediate
304620f4b53cSBarry Smith 
304795452b02SPatrick Sanan   Notes:
3048bb7acecfSBarry Smith   In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation.
3049bb7acecfSBarry Smith 
3050bb7acecfSBarry Smith   `INSERT_VALUES is` not supported for `DMDA`, in that case simply compute the values directly into a global vector instead of a local one.
3051bb7acecfSBarry Smith 
3052bb7acecfSBarry Smith   Use `DMLocalToGlobalEnd()` to complete the communication process.
3053bb7acecfSBarry Smith 
3054bb7acecfSBarry Smith   `DMLocalToGlobal()` is a short form of  `DMLocalToGlobalBegin()` and  `DMLocalToGlobalEnd()`
3055bb7acecfSBarry Smith 
3056bb7acecfSBarry Smith   `DMLocalToGlobalHookAdd()` may be used to provide additional operations that are performed during the update process.
30579a42bb27SBarry Smith 
30581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`
30599a42bb27SBarry Smith @*/
3060d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalBegin(DM dm, Vec l, InsertMode mode, Vec g)
3061d71ae5a4SJacob Faibussowitsch {
30627128ae9fSMatthew G Knepley   PetscSF                 sf;
306384330215SMatthew G. Knepley   PetscSection            s, gs;
3064d4d07f1eSToby Isaac   DMLocalToGlobalHookLink link;
3065ca3d3a14SMatthew G. Knepley   Vec                     tmpl;
3066ae5cfb4aSMatthew G. Knepley   const PetscScalar      *lArray;
3067ae5cfb4aSMatthew G. Knepley   PetscScalar            *gArray;
3068fa88e482SJed Brown   PetscBool               isInsert, transform, l_inplace = PETSC_FALSE, g_inplace = PETSC_FALSE;
3069d0295fc0SJunchao Zhang   PetscMemType            lmtype = PETSC_MEMTYPE_HOST, gmtype = PETSC_MEMTYPE_HOST;
30709a42bb27SBarry Smith 
30719a42bb27SBarry Smith   PetscFunctionBegin;
3072171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3073d4d07f1eSToby Isaac   for (link = dm->ltoghook; link; link = link->next) {
30741baa6e33SBarry Smith     if (link->beginhook) PetscCall((*link->beginhook)(dm, l, mode, g, link->ctx));
3075d4d07f1eSToby Isaac   }
30769566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalHook_Constraints(dm, l, mode, g, NULL));
30779566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
30789566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
30797128ae9fSMatthew G Knepley   switch (mode) {
30807128ae9fSMatthew G Knepley   case INSERT_VALUES:
30817128ae9fSMatthew G Knepley   case INSERT_ALL_VALUES:
3082d71ae5a4SJacob Faibussowitsch   case INSERT_BC_VALUES:
3083d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_TRUE;
3084d71ae5a4SJacob Faibussowitsch     break;
30857128ae9fSMatthew G Knepley   case ADD_VALUES:
30867128ae9fSMatthew G Knepley   case ADD_ALL_VALUES:
3087d71ae5a4SJacob Faibussowitsch   case ADD_BC_VALUES:
3088d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_FALSE;
3089d71ae5a4SJacob Faibussowitsch     break;
3090d71ae5a4SJacob Faibussowitsch   default:
3091d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode);
30927128ae9fSMatthew G Knepley   }
3093ca3d3a14SMatthew G. Knepley   if ((sf && !isInsert) || (s && isInsert)) {
30949566063dSJacob Faibussowitsch     PetscCall(DMHasBasisTransform(dm, &transform));
3095ca3d3a14SMatthew G. Knepley     if (transform) {
30969566063dSJacob Faibussowitsch       PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
30979566063dSJacob Faibussowitsch       PetscCall(VecCopy(l, tmpl));
30989566063dSJacob Faibussowitsch       PetscCall(DMPlexLocalToGlobalBasis(dm, tmpl));
30999566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(tmpl, &lArray));
3100fa88e482SJed Brown     } else if (isInsert) {
31019566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(l, &lArray));
3102fa88e482SJed Brown     } else {
31039566063dSJacob Faibussowitsch       PetscCall(VecGetArrayReadAndMemType(l, &lArray, &lmtype));
3104fa88e482SJed Brown       l_inplace = PETSC_TRUE;
3105ca3d3a14SMatthew G. Knepley     }
3106fa88e482SJed Brown     if (s && isInsert) {
31079566063dSJacob Faibussowitsch       PetscCall(VecGetArray(g, &gArray));
3108fa88e482SJed Brown     } else {
31099566063dSJacob Faibussowitsch       PetscCall(VecGetArrayAndMemType(g, &gArray, &gmtype));
3110fa88e482SJed Brown       g_inplace = PETSC_TRUE;
3111fa88e482SJed Brown     }
3112ca3d3a14SMatthew G. Knepley     if (sf && !isInsert) {
31139566063dSJacob Faibussowitsch       PetscCall(PetscSFReduceWithMemTypeBegin(sf, MPIU_SCALAR, lmtype, lArray, gmtype, gArray, MPIU_SUM));
311484330215SMatthew G. Knepley     } else if (s && isInsert) {
311584330215SMatthew G. Knepley       PetscInt gStart, pStart, pEnd, p;
311684330215SMatthew G. Knepley 
31179566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalSection(dm, &gs));
31189566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
31199566063dSJacob Faibussowitsch       PetscCall(VecGetOwnershipRange(g, &gStart, NULL));
312084330215SMatthew G. Knepley       for (p = pStart; p < pEnd; ++p) {
3121b3b16f48SMatthew G. Knepley         PetscInt dof, gdof, cdof, gcdof, off, goff, d, e;
312284330215SMatthew G. Knepley 
31239566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(s, p, &dof));
31249566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(gs, p, &gdof));
31259566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintDof(s, p, &cdof));
31269566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintDof(gs, p, &gcdof));
31279566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(s, p, &off));
31289566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(gs, p, &goff));
3129b3b16f48SMatthew G. Knepley         /* Ignore off-process data and points with no global data */
313003442857SMatthew G. Knepley         if (!gdof || goff < 0) continue;
31317a8be351SBarry Smith         PetscCheck(dof == gdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof);
3132b3b16f48SMatthew G. Knepley         /* If no constraints are enforced in the global vector */
3133b3b16f48SMatthew G. Knepley         if (!gcdof) {
313484330215SMatthew G. Knepley           for (d = 0; d < dof; ++d) gArray[goff - gStart + d] = lArray[off + d];
3135b3b16f48SMatthew G. Knepley           /* If constraints are enforced in the global vector */
3136b3b16f48SMatthew G. Knepley         } else if (cdof == gcdof) {
313784330215SMatthew G. Knepley           const PetscInt *cdofs;
313884330215SMatthew G. Knepley           PetscInt        cind = 0;
313984330215SMatthew G. Knepley 
31409566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetConstraintIndices(s, p, &cdofs));
3141b3b16f48SMatthew G. Knepley           for (d = 0, e = 0; d < dof; ++d) {
31429371c9d4SSatish Balay             if ((cind < cdof) && (d == cdofs[cind])) {
31439371c9d4SSatish Balay               ++cind;
31449371c9d4SSatish Balay               continue;
31459371c9d4SSatish Balay             }
3146b3b16f48SMatthew G. Knepley             gArray[goff - gStart + e++] = lArray[off + d];
314784330215SMatthew G. Knepley           }
31487a8be351SBarry Smith         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof);
314984330215SMatthew G. Knepley       }
3150ca3d3a14SMatthew G. Knepley     }
3151fa88e482SJed Brown     if (g_inplace) {
31529566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayAndMemType(g, &gArray));
3153fa88e482SJed Brown     } else {
31549566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(g, &gArray));
3155fa88e482SJed Brown     }
3156ca3d3a14SMatthew G. Knepley     if (transform) {
31579566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(tmpl, &lArray));
31589566063dSJacob Faibussowitsch       PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
3159fa88e482SJed Brown     } else if (l_inplace) {
31609566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayReadAndMemType(l, &lArray));
3161ca3d3a14SMatthew G. Knepley     } else {
31629566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(l, &lArray));
3163ca3d3a14SMatthew G. Knepley     }
31647128ae9fSMatthew G Knepley   } else {
3165fa1e479aSStefano Zampini     PetscUseTypeMethod(dm, localtoglobalbegin, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g);
31667128ae9fSMatthew G Knepley   }
31673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31689a42bb27SBarry Smith }
31699a42bb27SBarry Smith 
31709a42bb27SBarry Smith /*@
31719a42bb27SBarry Smith   DMLocalToGlobalEnd - updates global vectors from local vectors
317247c6ae99SBarry Smith 
317320f4b53cSBarry Smith   Neighbor-wise Collective
317447c6ae99SBarry Smith 
317547c6ae99SBarry Smith   Input Parameters:
3176bb7acecfSBarry Smith + dm   - the `DM` object
3177f6813fd5SJed Brown . l    - the local vector
3178bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES`
3179f6813fd5SJed Brown - g    - the global vector
318047c6ae99SBarry Smith 
318101729b5cSPatrick Sanan   Level: intermediate
318247c6ae99SBarry Smith 
3183bb7acecfSBarry Smith   Note:
3184bb7acecfSBarry Smith   See `DMLocalToGlobalBegin()` for full details
3185bb7acecfSBarry Smith 
318660225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`
318747c6ae99SBarry Smith @*/
3188d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalEnd(DM dm, Vec l, InsertMode mode, Vec g)
3189d71ae5a4SJacob Faibussowitsch {
31907128ae9fSMatthew G Knepley   PetscSF                 sf;
319184330215SMatthew G. Knepley   PetscSection            s;
3192d4d07f1eSToby Isaac   DMLocalToGlobalHookLink link;
3193ca3d3a14SMatthew G. Knepley   PetscBool               isInsert, transform;
319447c6ae99SBarry Smith 
319547c6ae99SBarry Smith   PetscFunctionBegin;
3196171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
31979566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
31989566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
31997128ae9fSMatthew G Knepley   switch (mode) {
32007128ae9fSMatthew G Knepley   case INSERT_VALUES:
3201d71ae5a4SJacob Faibussowitsch   case INSERT_ALL_VALUES:
3202d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_TRUE;
3203d71ae5a4SJacob Faibussowitsch     break;
32047128ae9fSMatthew G Knepley   case ADD_VALUES:
3205d71ae5a4SJacob Faibussowitsch   case ADD_ALL_VALUES:
3206d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_FALSE;
3207d71ae5a4SJacob Faibussowitsch     break;
3208d71ae5a4SJacob Faibussowitsch   default:
3209d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode);
32107128ae9fSMatthew G Knepley   }
321184330215SMatthew G. Knepley   if (sf && !isInsert) {
3212ae5cfb4aSMatthew G. Knepley     const PetscScalar *lArray;
3213ae5cfb4aSMatthew G. Knepley     PetscScalar       *gArray;
3214ca3d3a14SMatthew G. Knepley     Vec                tmpl;
321584330215SMatthew G. Knepley 
32169566063dSJacob Faibussowitsch     PetscCall(DMHasBasisTransform(dm, &transform));
3217ca3d3a14SMatthew G. Knepley     if (transform) {
32189566063dSJacob Faibussowitsch       PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
32199566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(tmpl, &lArray));
3220ca3d3a14SMatthew G. Knepley     } else {
32219566063dSJacob Faibussowitsch       PetscCall(VecGetArrayReadAndMemType(l, &lArray, NULL));
3222ca3d3a14SMatthew G. Knepley     }
32239566063dSJacob Faibussowitsch     PetscCall(VecGetArrayAndMemType(g, &gArray, NULL));
32249566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceEnd(sf, MPIU_SCALAR, lArray, gArray, MPIU_SUM));
3225ca3d3a14SMatthew G. Knepley     if (transform) {
32269566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(tmpl, &lArray));
32279566063dSJacob Faibussowitsch       PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
3228ca3d3a14SMatthew G. Knepley     } else {
32299566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayReadAndMemType(l, &lArray));
3230ca3d3a14SMatthew G. Knepley     }
32319566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayAndMemType(g, &gArray));
323284330215SMatthew G. Knepley   } else if (s && isInsert) {
32337128ae9fSMatthew G Knepley   } else {
3234fa1e479aSStefano Zampini     PetscUseTypeMethod(dm, localtoglobalend, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g);
32357128ae9fSMatthew G Knepley   }
3236d4d07f1eSToby Isaac   for (link = dm->ltoghook; link; link = link->next) {
32379566063dSJacob Faibussowitsch     if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx));
3238d4d07f1eSToby Isaac   }
32393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
324047c6ae99SBarry Smith }
324147c6ae99SBarry Smith 
3242f089877aSRichard Tran Mills /*@
3243a4e35b19SJacob Faibussowitsch   DMLocalToLocalBegin - Begins the process of mapping values from a local vector (that include
3244a4e35b19SJacob Faibussowitsch   ghost points that contain irrelevant values) to another local vector where the ghost points
3245a4e35b19SJacob Faibussowitsch   in the second are set correctly from values on other MPI ranks.
3246f089877aSRichard Tran Mills 
324720f4b53cSBarry Smith   Neighbor-wise Collective
3248f089877aSRichard Tran Mills 
3249f089877aSRichard Tran Mills   Input Parameters:
3250bb7acecfSBarry Smith + dm   - the `DM` object
3251bc0a1609SRichard Tran Mills . g    - the original local vector
3252bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES`
3253f089877aSRichard Tran Mills 
3254bc0a1609SRichard Tran Mills   Output Parameter:
3255bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values
3256f089877aSRichard Tran Mills 
3257f089877aSRichard Tran Mills   Level: intermediate
3258f089877aSRichard Tran Mills 
325973ff1848SBarry Smith   Note:
3260a4e35b19SJacob Faibussowitsch   Must be followed by `DMLocalToLocalEnd()`.
3261a4e35b19SJacob Faibussowitsch 
326260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`
3263f089877aSRichard Tran Mills @*/
3264d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l)
3265d71ae5a4SJacob Faibussowitsch {
3266f089877aSRichard Tran Mills   PetscFunctionBegin;
3267f089877aSRichard Tran Mills   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
32689f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(g, VEC_CLASSID, 2);
32699f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(l, VEC_CLASSID, 4);
32709f4ada15SMatthew G. Knepley   PetscUseTypeMethod(dm, localtolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
32713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3272f089877aSRichard Tran Mills }
3273f089877aSRichard Tran Mills 
3274f089877aSRichard Tran Mills /*@
3275bb7acecfSBarry Smith   DMLocalToLocalEnd - Maps from a local vector to another local vector where the ghost
3276bb7acecfSBarry Smith   points in the second are set correctly. Must be preceded by `DMLocalToLocalBegin()`.
3277f089877aSRichard Tran Mills 
327820f4b53cSBarry Smith   Neighbor-wise Collective
3279f089877aSRichard Tran Mills 
3280f089877aSRichard Tran Mills   Input Parameters:
328160225df5SJacob Faibussowitsch + dm   - the `DM` object
3282bc0a1609SRichard Tran Mills . g    - the original local vector
3283bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES`
3284f089877aSRichard Tran Mills 
3285bc0a1609SRichard Tran Mills   Output Parameter:
3286bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values
3287f089877aSRichard Tran Mills 
3288f089877aSRichard Tran Mills   Level: intermediate
3289f089877aSRichard Tran Mills 
329060225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`
3291f089877aSRichard Tran Mills @*/
3292d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l)
3293d71ae5a4SJacob Faibussowitsch {
3294f089877aSRichard Tran Mills   PetscFunctionBegin;
3295f089877aSRichard Tran Mills   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
32969f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(g, VEC_CLASSID, 2);
32979f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(l, VEC_CLASSID, 4);
32989f4ada15SMatthew G. Knepley   PetscUseTypeMethod(dm, localtolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
32993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3300f089877aSRichard Tran Mills }
3301f089877aSRichard Tran Mills 
330247c6ae99SBarry Smith /*@
3303bb7acecfSBarry Smith   DMCoarsen - Coarsens a `DM` object using a standard, non-adaptive coarsening of the underlying mesh
330447c6ae99SBarry Smith 
330520f4b53cSBarry Smith   Collective
330647c6ae99SBarry Smith 
3307d8d19677SJose E. Roman   Input Parameters:
3308bb7acecfSBarry Smith + dm   - the `DM` object
330920f4b53cSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`)
331047c6ae99SBarry Smith 
331147c6ae99SBarry Smith   Output Parameter:
3312bb7acecfSBarry Smith . dmc - the coarsened `DM`
331347c6ae99SBarry Smith 
331447c6ae99SBarry Smith   Level: developer
331547c6ae99SBarry Smith 
331673ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`,
331773ff1848SBarry Smith           `DMCoarsenHookAdd()`, `DMCoarsenHookRemove()`
331847c6ae99SBarry Smith @*/
3319d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsen(DM dm, MPI_Comm comm, DM *dmc)
3320d71ae5a4SJacob Faibussowitsch {
3321b17ce1afSJed Brown   DMCoarsenHookLink link;
332247c6ae99SBarry Smith 
332347c6ae99SBarry Smith   PetscFunctionBegin;
3324171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
33259566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_Coarsen, dm, 0, 0, 0));
3326dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, coarsen, comm, dmc);
3327b9d85ea2SLisandro Dalcin   if (*dmc) {
3328a3574896SRichard Tran Mills     (*dmc)->bind_below = dm->bind_below; /* Propagate this from parent DM; otherwise -dm_bind_below will be useless for multigrid cases. */
33299566063dSJacob Faibussowitsch     PetscCall(DMSetCoarseDM(dm, *dmc));
333043842a1eSJed Brown     (*dmc)->ops->creatematrix = dm->ops->creatematrix;
33319566063dSJacob Faibussowitsch     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmc));
3332644e2e5bSBarry Smith     (*dmc)->ctx       = dm->ctx;
33330598a293SJed Brown     (*dmc)->levelup   = dm->levelup;
3334656b349aSBarry Smith     (*dmc)->leveldown = dm->leveldown + 1;
33359566063dSJacob Faibussowitsch     PetscCall(DMSetMatType(*dmc, dm->mattype));
3336b17ce1afSJed Brown     for (link = dm->coarsenhook; link; link = link->next) {
33379566063dSJacob Faibussowitsch       if (link->coarsenhook) PetscCall((*link->coarsenhook)(dm, *dmc, link->ctx));
3338b17ce1afSJed Brown     }
3339b9d85ea2SLisandro Dalcin   }
33409566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_Coarsen, dm, 0, 0, 0));
33417a8be351SBarry Smith   PetscCheck(*dmc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "NULL coarse mesh produced");
33423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3343b17ce1afSJed Brown }
3344b17ce1afSJed Brown 
3345bb9467b5SJed Brown /*@C
3346b17ce1afSJed Brown   DMCoarsenHookAdd - adds a callback to be run when restricting a nonlinear problem to the coarse grid
3347b17ce1afSJed Brown 
334820f4b53cSBarry Smith   Logically Collective; No Fortran Support
3349b17ce1afSJed Brown 
33504165533cSJose E. Roman   Input Parameters:
3351bb7acecfSBarry Smith + fine         - `DM` on which to run a hook when restricting to a coarser level
3352b17ce1afSJed Brown . coarsenhook  - function to run when setting up a coarser level
3353bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels (called once per `SNESSolve()`)
335420f4b53cSBarry Smith - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3355b17ce1afSJed Brown 
335620f4b53cSBarry Smith   Calling sequence of `coarsenhook`:
3357bb7acecfSBarry Smith + fine   - fine level `DM`
3358bb7acecfSBarry Smith . coarse - coarse level `DM` to restrict problem to
3359b17ce1afSJed Brown - ctx    - optional user-defined function context
3360b17ce1afSJed Brown 
336120f4b53cSBarry Smith   Calling sequence of `restricthook`:
3362bb7acecfSBarry Smith + fine      - fine level `DM`
3363bb7acecfSBarry Smith . mrestrict - matrix restricting a fine-level solution to the coarse grid, usually the transpose of the interpolation
3364c833c3b5SJed Brown . rscale    - scaling vector for restriction
3365c833c3b5SJed Brown . inject    - matrix restricting by injection
3366b17ce1afSJed Brown . coarse    - coarse level DM to update
3367b17ce1afSJed Brown - ctx       - optional user-defined function context
3368b17ce1afSJed Brown 
3369b17ce1afSJed Brown   Level: advanced
3370b17ce1afSJed Brown 
3371b17ce1afSJed Brown   Notes:
3372bb7acecfSBarry Smith   This function is only needed if auxiliary data, attached to the `DM` with `PetscObjectCompose()`, needs to be set up or passed from the fine `DM` to the coarse `DM`.
3373b17ce1afSJed Brown 
3374b17ce1afSJed Brown   If this function is called multiple times, the hooks will be run in the order they are added.
3375b17ce1afSJed Brown 
3376b17ce1afSJed Brown   In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to
3377bb7acecfSBarry Smith   extract the finest level information from its context (instead of from the `SNES`).
3378b17ce1afSJed Brown 
3379bb7acecfSBarry Smith   The hooks are automatically called by `DMRestrict()`
3380bb7acecfSBarry Smith 
33811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
3382b17ce1afSJed Brown @*/
3383a4e35b19SJacob Faibussowitsch PetscErrorCode DMCoarsenHookAdd(DM fine, PetscErrorCode (*coarsenhook)(DM fine, DM coarse, void *ctx), PetscErrorCode (*restricthook)(DM fine, Mat mrestrict, Vec rscale, Mat inject, DM coarse, void *ctx), void *ctx)
3384d71ae5a4SJacob Faibussowitsch {
3385b17ce1afSJed Brown   DMCoarsenHookLink link, *p;
3386b17ce1afSJed Brown 
3387b17ce1afSJed Brown   PetscFunctionBegin;
3388b17ce1afSJed Brown   PetscValidHeaderSpecific(fine, DM_CLASSID, 1);
33891e3d8eccSJed Brown   for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
33903ba16761SJacob Faibussowitsch     if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
33911e3d8eccSJed Brown   }
33929566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
3393b17ce1afSJed Brown   link->coarsenhook  = coarsenhook;
3394b17ce1afSJed Brown   link->restricthook = restricthook;
3395b17ce1afSJed Brown   link->ctx          = ctx;
33960298fd71SBarry Smith   link->next         = NULL;
3397b17ce1afSJed Brown   *p                 = link;
33983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3399b17ce1afSJed Brown }
3400b17ce1afSJed Brown 
3401dc822a44SJed Brown /*@C
3402bb7acecfSBarry Smith   DMCoarsenHookRemove - remove a callback set with `DMCoarsenHookAdd()`
3403dc822a44SJed Brown 
340420f4b53cSBarry Smith   Logically Collective; No Fortran Support
3405dc822a44SJed Brown 
34064165533cSJose E. Roman   Input Parameters:
3407bb7acecfSBarry Smith + fine         - `DM` on which to run a hook when restricting to a coarser level
3408dc822a44SJed Brown . coarsenhook  - function to run when setting up a coarser level
3409bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels
341020f4b53cSBarry Smith - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3411dc822a44SJed Brown 
3412dc822a44SJed Brown   Level: advanced
3413dc822a44SJed Brown 
341473ff1848SBarry Smith   Notes:
341573ff1848SBarry Smith   This function does nothing if the `coarsenhook` is not in the list.
341673ff1848SBarry Smith 
341773ff1848SBarry Smith   See `DMCoarsenHookAdd()` for the calling sequence of `coarsenhook` and `restricthook`
3418dc822a44SJed Brown 
34191cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
3420dc822a44SJed Brown @*/
3421d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookRemove(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx)
3422d71ae5a4SJacob Faibussowitsch {
3423dc822a44SJed Brown   DMCoarsenHookLink link, *p;
3424dc822a44SJed Brown 
3425dc822a44SJed Brown   PetscFunctionBegin;
3426dc822a44SJed Brown   PetscValidHeaderSpecific(fine, DM_CLASSID, 1);
3427dc822a44SJed Brown   for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Search the list of current hooks */
3428dc822a44SJed Brown     if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) {
3429dc822a44SJed Brown       link = *p;
3430dc822a44SJed Brown       *p   = link->next;
34319566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
3432dc822a44SJed Brown       break;
3433dc822a44SJed Brown     }
3434dc822a44SJed Brown   }
34353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3436dc822a44SJed Brown }
3437dc822a44SJed Brown 
3438b17ce1afSJed Brown /*@
3439bb7acecfSBarry Smith   DMRestrict - restricts user-defined problem data to a coarser `DM` by running hooks registered by `DMCoarsenHookAdd()`
3440b17ce1afSJed Brown 
3441b17ce1afSJed Brown   Collective if any hooks are
3442b17ce1afSJed Brown 
34434165533cSJose E. Roman   Input Parameters:
3444bb7acecfSBarry Smith + fine    - finer `DM` from which the data is obtained
3445bb7acecfSBarry Smith . restrct - restriction matrix, apply using `MatRestrict()`, usually the transpose of the interpolation
3446e91eccc2SStefano Zampini . rscale  - scaling vector for restriction
3447bb7acecfSBarry Smith . inject  - injection matrix, also use `MatRestrict()`
344820f4b53cSBarry Smith - coarse  - coarser `DM` to update
3449b17ce1afSJed Brown 
3450b17ce1afSJed Brown   Level: developer
3451b17ce1afSJed Brown 
345273ff1848SBarry Smith   Developer Note:
3453bb7acecfSBarry Smith   Though this routine is called `DMRestrict()` the hooks are added with `DMCoarsenHookAdd()`, a consistent terminology would be better
3454bb7acecfSBarry Smith 
34551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMInterpolate()`, `DMRefineHookAdd()`
3456b17ce1afSJed Brown @*/
3457d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestrict(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse)
3458d71ae5a4SJacob Faibussowitsch {
3459b17ce1afSJed Brown   DMCoarsenHookLink link;
3460b17ce1afSJed Brown 
3461b17ce1afSJed Brown   PetscFunctionBegin;
3462b17ce1afSJed Brown   for (link = fine->coarsenhook; link; link = link->next) {
34631baa6e33SBarry Smith     if (link->restricthook) PetscCall((*link->restricthook)(fine, restrct, rscale, inject, coarse, link->ctx));
3464b17ce1afSJed Brown   }
34653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
346647c6ae99SBarry Smith }
346747c6ae99SBarry Smith 
3468bb9467b5SJed Brown /*@C
346973ff1848SBarry Smith   DMSubDomainHookAdd - adds a callback to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()`
34705dbd56e3SPeter Brune 
347120f4b53cSBarry Smith   Logically Collective; No Fortran Support
34725dbd56e3SPeter Brune 
34734165533cSJose E. Roman   Input Parameters:
3474bb7acecfSBarry Smith + global       - global `DM`
3475bb7acecfSBarry Smith . ddhook       - function to run to pass data to the decomposition `DM` upon its creation
34765dbd56e3SPeter Brune . restricthook - function to run to update data on block solve (at the beginning of the block solve)
347720f4b53cSBarry Smith - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
34785dbd56e3SPeter Brune 
347920f4b53cSBarry Smith   Calling sequence of `ddhook`:
3480bb7acecfSBarry Smith + global - global `DM`
348173ff1848SBarry Smith . block  - subdomain `DM`
3482ec4806b8SPeter Brune - ctx    - optional user-defined function context
3483ec4806b8SPeter Brune 
348420f4b53cSBarry Smith   Calling sequence of `restricthook`:
3485bb7acecfSBarry Smith + global - global `DM`
348673ff1848SBarry Smith . out    - scatter to the outer (with ghost and overlap points) sub vector
348773ff1848SBarry Smith . in     - scatter to sub vector values only owned locally
348873ff1848SBarry Smith . block  - subdomain `DM`
34895dbd56e3SPeter Brune - ctx    - optional user-defined function context
34905dbd56e3SPeter Brune 
34915dbd56e3SPeter Brune   Level: advanced
34925dbd56e3SPeter Brune 
34935dbd56e3SPeter Brune   Notes:
349473ff1848SBarry Smith   This function can be used if auxiliary data needs to be set up on subdomain `DM`s.
34955dbd56e3SPeter Brune 
34965dbd56e3SPeter Brune   If this function is called multiple times, the hooks will be run in the order they are added.
34975dbd56e3SPeter Brune 
34985dbd56e3SPeter Brune   In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to
3499bb7acecfSBarry Smith   extract the global information from its context (instead of from the `SNES`).
35005dbd56e3SPeter Brune 
350173ff1848SBarry Smith   Developer Note:
350273ff1848SBarry Smith   It is unclear what "block solve" means within the definition of `restricthook`
350373ff1848SBarry Smith 
350473ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`, `DMCreateDomainDecomposition()`
35055dbd56e3SPeter Brune @*/
3506a4e35b19SJacob Faibussowitsch PetscErrorCode DMSubDomainHookAdd(DM global, PetscErrorCode (*ddhook)(DM global, DM block, void *ctx), PetscErrorCode (*restricthook)(DM global, VecScatter out, VecScatter in, DM block, void *ctx), void *ctx)
3507d71ae5a4SJacob Faibussowitsch {
3508be081cd6SPeter Brune   DMSubDomainHookLink link, *p;
35095dbd56e3SPeter Brune 
35105dbd56e3SPeter Brune   PetscFunctionBegin;
35115dbd56e3SPeter Brune   PetscValidHeaderSpecific(global, DM_CLASSID, 1);
3512b3a6b972SJed Brown   for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
35133ba16761SJacob Faibussowitsch     if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
3514b3a6b972SJed Brown   }
35159566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
35165dbd56e3SPeter Brune   link->restricthook = restricthook;
3517be081cd6SPeter Brune   link->ddhook       = ddhook;
35185dbd56e3SPeter Brune   link->ctx          = ctx;
35190298fd71SBarry Smith   link->next         = NULL;
35205dbd56e3SPeter Brune   *p                 = link;
35213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35225dbd56e3SPeter Brune }
35235dbd56e3SPeter Brune 
3524b3a6b972SJed Brown /*@C
352573ff1848SBarry Smith   DMSubDomainHookRemove - remove a callback from the list to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()`
3526b3a6b972SJed Brown 
352720f4b53cSBarry Smith   Logically Collective; No Fortran Support
3528b3a6b972SJed Brown 
35294165533cSJose E. Roman   Input Parameters:
3530bb7acecfSBarry Smith + global       - global `DM`
3531bb7acecfSBarry Smith . ddhook       - function to run to pass data to the decomposition `DM` upon its creation
3532b3a6b972SJed Brown . restricthook - function to run to update data on block solve (at the beginning of the block solve)
353320f4b53cSBarry Smith - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3534b3a6b972SJed Brown 
3535b3a6b972SJed Brown   Level: advanced
3536b3a6b972SJed Brown 
353773ff1848SBarry Smith   Note:
353873ff1848SBarry Smith   See `DMSubDomainHookAdd()` for the calling sequences of `ddhook` and `restricthook`
353973ff1848SBarry Smith 
354073ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`,
354173ff1848SBarry Smith           `DMCreateDomainDecomposition()`
3542b3a6b972SJed Brown @*/
3543d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookRemove(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx)
3544d71ae5a4SJacob Faibussowitsch {
3545b3a6b972SJed Brown   DMSubDomainHookLink link, *p;
3546b3a6b972SJed Brown 
3547b3a6b972SJed Brown   PetscFunctionBegin;
3548b3a6b972SJed Brown   PetscValidHeaderSpecific(global, DM_CLASSID, 1);
3549b3a6b972SJed Brown   for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Search the list of current hooks */
3550b3a6b972SJed Brown     if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) {
3551b3a6b972SJed Brown       link = *p;
3552b3a6b972SJed Brown       *p   = link->next;
35539566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
3554b3a6b972SJed Brown       break;
3555b3a6b972SJed Brown     }
3556b3a6b972SJed Brown   }
35573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3558b3a6b972SJed Brown }
3559b3a6b972SJed Brown 
35605dbd56e3SPeter Brune /*@
356173ff1848SBarry Smith   DMSubDomainRestrict - restricts user-defined problem data to a subdomain `DM` by running hooks registered by `DMSubDomainHookAdd()`
35625dbd56e3SPeter Brune 
35635dbd56e3SPeter Brune   Collective if any hooks are
35645dbd56e3SPeter Brune 
35654165533cSJose E. Roman   Input Parameters:
3566a4e35b19SJacob Faibussowitsch + global   - The global `DM` to use as a base
3567a4e35b19SJacob Faibussowitsch . oscatter - The scatter from domain global vector filling subdomain global vector with overlap
3568a4e35b19SJacob Faibussowitsch . gscatter - The scatter from domain global vector filling subdomain local vector with ghosts
3569a4e35b19SJacob Faibussowitsch - subdm    - The subdomain `DM` to update
35705dbd56e3SPeter Brune 
35715dbd56e3SPeter Brune   Level: developer
35725dbd56e3SPeter Brune 
357373ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMCreateDomainDecomposition()`
35745dbd56e3SPeter Brune @*/
3575d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainRestrict(DM global, VecScatter oscatter, VecScatter gscatter, DM subdm)
3576d71ae5a4SJacob Faibussowitsch {
3577be081cd6SPeter Brune   DMSubDomainHookLink link;
35785dbd56e3SPeter Brune 
35795dbd56e3SPeter Brune   PetscFunctionBegin;
3580be081cd6SPeter Brune   for (link = global->subdomainhook; link; link = link->next) {
35811baa6e33SBarry Smith     if (link->restricthook) PetscCall((*link->restricthook)(global, oscatter, gscatter, subdm, link->ctx));
35825dbd56e3SPeter Brune   }
35833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35845dbd56e3SPeter Brune }
35855dbd56e3SPeter Brune 
35865fe1f584SPeter Brune /*@
3587bb7acecfSBarry Smith   DMGetCoarsenLevel - Gets the number of coarsenings that have generated this `DM`.
35885fe1f584SPeter Brune 
35895fe1f584SPeter Brune   Not Collective
35905fe1f584SPeter Brune 
35915fe1f584SPeter Brune   Input Parameter:
3592bb7acecfSBarry Smith . dm - the `DM` object
35935fe1f584SPeter Brune 
35945fe1f584SPeter Brune   Output Parameter:
35956a7d9d85SPeter Brune . level - number of coarsenings
35965fe1f584SPeter Brune 
35975fe1f584SPeter Brune   Level: developer
35985fe1f584SPeter Brune 
35991cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMSetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
36005fe1f584SPeter Brune @*/
3601d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarsenLevel(DM dm, PetscInt *level)
3602d71ae5a4SJacob Faibussowitsch {
36035fe1f584SPeter Brune   PetscFunctionBegin;
36045fe1f584SPeter Brune   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36054f572ea9SToby Isaac   PetscAssertPointer(level, 2);
36065fe1f584SPeter Brune   *level = dm->leveldown;
36073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
36085fe1f584SPeter Brune }
36095fe1f584SPeter Brune 
36109a64c4a8SMatthew G. Knepley /*@
3611bb7acecfSBarry Smith   DMSetCoarsenLevel - Sets the number of coarsenings that have generated this `DM`.
36129a64c4a8SMatthew G. Knepley 
361320f4b53cSBarry Smith   Collective
36149a64c4a8SMatthew G. Knepley 
36159a64c4a8SMatthew G. Knepley   Input Parameters:
3616bb7acecfSBarry Smith + dm    - the `DM` object
36179a64c4a8SMatthew G. Knepley - level - number of coarsenings
36189a64c4a8SMatthew G. Knepley 
36199a64c4a8SMatthew G. Knepley   Level: developer
36209a64c4a8SMatthew G. Knepley 
3621bb7acecfSBarry Smith   Note:
3622bb7acecfSBarry Smith   This is rarely used directly, the information is automatically set when a `DM` is created with `DMCoarsen()`
3623bb7acecfSBarry Smith 
362442747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
36259a64c4a8SMatthew G. Knepley @*/
3626d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarsenLevel(DM dm, PetscInt level)
3627d71ae5a4SJacob Faibussowitsch {
36289a64c4a8SMatthew G. Knepley   PetscFunctionBegin;
36299a64c4a8SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36309a64c4a8SMatthew G. Knepley   dm->leveldown = level;
36313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
36329a64c4a8SMatthew G. Knepley }
36339a64c4a8SMatthew G. Knepley 
3634cc4c1da9SBarry Smith /*@
3635bb7acecfSBarry Smith   DMRefineHierarchy - Refines a `DM` object, all levels at once
363647c6ae99SBarry Smith 
363720f4b53cSBarry Smith   Collective
363847c6ae99SBarry Smith 
3639d8d19677SJose E. Roman   Input Parameters:
3640bb7acecfSBarry Smith + dm      - the `DM` object
364147c6ae99SBarry Smith - nlevels - the number of levels of refinement
364247c6ae99SBarry Smith 
364347c6ae99SBarry Smith   Output Parameter:
3644bb7acecfSBarry Smith . dmf - the refined `DM` hierarchy
364547c6ae99SBarry Smith 
364647c6ae99SBarry Smith   Level: developer
364747c6ae99SBarry Smith 
36481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMCoarsenHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
364947c6ae99SBarry Smith @*/
3650d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHierarchy(DM dm, PetscInt nlevels, DM dmf[])
3651d71ae5a4SJacob Faibussowitsch {
365247c6ae99SBarry Smith   PetscFunctionBegin;
3653171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36547a8be351SBarry Smith   PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative");
36553ba16761SJacob Faibussowitsch   if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS);
36564f572ea9SToby Isaac   PetscAssertPointer(dmf, 3);
3657213acdd3SPierre Jolivet   if (dm->ops->refine && !dm->ops->refinehierarchy) {
365847c6ae99SBarry Smith     PetscInt i;
365947c6ae99SBarry Smith 
36609566063dSJacob Faibussowitsch     PetscCall(DMRefine(dm, PetscObjectComm((PetscObject)dm), &dmf[0]));
366148a46eb9SPierre Jolivet     for (i = 1; i < nlevels; i++) PetscCall(DMRefine(dmf[i - 1], PetscObjectComm((PetscObject)dm), &dmf[i]));
3662213acdd3SPierre Jolivet   } else PetscUseTypeMethod(dm, refinehierarchy, nlevels, dmf);
36633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
366447c6ae99SBarry Smith }
366547c6ae99SBarry Smith 
3666cc4c1da9SBarry Smith /*@
3667bb7acecfSBarry Smith   DMCoarsenHierarchy - Coarsens a `DM` object, all levels at once
366847c6ae99SBarry Smith 
366920f4b53cSBarry Smith   Collective
367047c6ae99SBarry Smith 
3671d8d19677SJose E. Roman   Input Parameters:
3672bb7acecfSBarry Smith + dm      - the `DM` object
367347c6ae99SBarry Smith - nlevels - the number of levels of coarsening
367447c6ae99SBarry Smith 
367547c6ae99SBarry Smith   Output Parameter:
3676bb7acecfSBarry Smith . dmc - the coarsened `DM` hierarchy
367747c6ae99SBarry Smith 
367847c6ae99SBarry Smith   Level: developer
367947c6ae99SBarry Smith 
36801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMRefineHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
368147c6ae99SBarry Smith @*/
3682d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHierarchy(DM dm, PetscInt nlevels, DM dmc[])
3683d71ae5a4SJacob Faibussowitsch {
368447c6ae99SBarry Smith   PetscFunctionBegin;
3685171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36867a8be351SBarry Smith   PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative");
36873ba16761SJacob Faibussowitsch   if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS);
36884f572ea9SToby Isaac   PetscAssertPointer(dmc, 3);
3689213acdd3SPierre Jolivet   if (dm->ops->coarsen && !dm->ops->coarsenhierarchy) {
369047c6ae99SBarry Smith     PetscInt i;
369147c6ae99SBarry Smith 
36929566063dSJacob Faibussowitsch     PetscCall(DMCoarsen(dm, PetscObjectComm((PetscObject)dm), &dmc[0]));
369348a46eb9SPierre Jolivet     for (i = 1; i < nlevels; i++) PetscCall(DMCoarsen(dmc[i - 1], PetscObjectComm((PetscObject)dm), &dmc[i]));
3694213acdd3SPierre Jolivet   } else PetscUseTypeMethod(dm, coarsenhierarchy, nlevels, dmc);
36953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
369647c6ae99SBarry Smith }
369747c6ae99SBarry Smith 
36981a266240SBarry Smith /*@C
3699bb7acecfSBarry Smith   DMSetApplicationContextDestroy - Sets a user function that will be called to destroy the application context when the `DM` is destroyed
37001a266240SBarry Smith 
3701bb7acecfSBarry Smith   Logically Collective if the function is collective
37021a266240SBarry Smith 
37031a266240SBarry Smith   Input Parameters:
3704bb7acecfSBarry Smith + dm      - the `DM` object
370549abdd8aSBarry Smith - destroy - the destroy function, see `PetscCtxDestroyFn` for the calling sequence
37061a266240SBarry Smith 
37071a266240SBarry Smith   Level: intermediate
37081a266240SBarry Smith 
370949abdd8aSBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`,
371049abdd8aSBarry Smith           `DMGetApplicationContext()`, `PetscCtxDestroyFn`
3711f07f9ceaSJed Brown @*/
371249abdd8aSBarry Smith PetscErrorCode DMSetApplicationContextDestroy(DM dm, PetscCtxDestroyFn *destroy)
3713d71ae5a4SJacob Faibussowitsch {
37141a266240SBarry Smith   PetscFunctionBegin;
3715171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
37161a266240SBarry Smith   dm->ctxdestroy = destroy;
37173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
37181a266240SBarry Smith }
37191a266240SBarry Smith 
3720b07ff414SBarry Smith /*@
3721bb7acecfSBarry Smith   DMSetApplicationContext - Set a user context into a `DM` object
372247c6ae99SBarry Smith 
372347c6ae99SBarry Smith   Not Collective
372447c6ae99SBarry Smith 
372547c6ae99SBarry Smith   Input Parameters:
3726bb7acecfSBarry Smith + dm  - the `DM` object
372747c6ae99SBarry Smith - ctx - the user context
372847c6ae99SBarry Smith 
372947c6ae99SBarry Smith   Level: intermediate
373047c6ae99SBarry Smith 
3731e33b3f0fSStefano Zampini   Notes:
373235cb6cd3SPierre Jolivet   A user context is a way to pass problem specific information that is accessible whenever the `DM` is available
3733e33b3f0fSStefano Zampini   In a multilevel solver, the user context is shared by all the `DM` in the hierarchy; it is thus not advisable
3734e33b3f0fSStefano Zampini   to store objects that represent discretized quantities inside the context.
3735bb7acecfSBarry Smith 
373660225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
373747c6ae99SBarry Smith @*/
3738d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContext(DM dm, void *ctx)
3739d71ae5a4SJacob Faibussowitsch {
374047c6ae99SBarry Smith   PetscFunctionBegin;
3741171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
374247c6ae99SBarry Smith   dm->ctx = ctx;
37433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
374447c6ae99SBarry Smith }
374547c6ae99SBarry Smith 
374647c6ae99SBarry Smith /*@
3747bb7acecfSBarry Smith   DMGetApplicationContext - Gets a user context from a `DM` object
374847c6ae99SBarry Smith 
374947c6ae99SBarry Smith   Not Collective
375047c6ae99SBarry Smith 
375147c6ae99SBarry Smith   Input Parameter:
3752bb7acecfSBarry Smith . dm - the `DM` object
375347c6ae99SBarry Smith 
375447c6ae99SBarry Smith   Output Parameter:
375547c6ae99SBarry Smith . ctx - the user context
375647c6ae99SBarry Smith 
375747c6ae99SBarry Smith   Level: intermediate
375847c6ae99SBarry Smith 
3759bb7acecfSBarry Smith   Note:
376035cb6cd3SPierre Jolivet   A user context is a way to pass problem specific information that is accessible whenever the `DM` is available
3761bb7acecfSBarry Smith 
376242747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
376347c6ae99SBarry Smith @*/
3764d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetApplicationContext(DM dm, void *ctx)
3765d71ae5a4SJacob Faibussowitsch {
376647c6ae99SBarry Smith   PetscFunctionBegin;
3767171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
37681b2093e4SBarry Smith   *(void **)ctx = dm->ctx;
37693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
377047c6ae99SBarry Smith }
377147c6ae99SBarry Smith 
377208da532bSDmitry Karpeev /*@C
3773bb7acecfSBarry Smith   DMSetVariableBounds - sets a function to compute the lower and upper bound vectors for `SNESVI`.
377408da532bSDmitry Karpeev 
377520f4b53cSBarry Smith   Logically Collective
377608da532bSDmitry Karpeev 
3777d8d19677SJose E. Roman   Input Parameters:
377808da532bSDmitry Karpeev + dm - the DM object
377920f4b53cSBarry Smith - f  - the function that computes variable bounds used by SNESVI (use `NULL` to cancel a previous function that was set)
378008da532bSDmitry Karpeev 
378108da532bSDmitry Karpeev   Level: intermediate
378208da532bSDmitry Karpeev 
37831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`,
3784db781477SPatrick Sanan          `DMSetJacobian()`
378508da532bSDmitry Karpeev @*/
3786d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVariableBounds(DM dm, PetscErrorCode (*f)(DM, Vec, Vec))
3787d71ae5a4SJacob Faibussowitsch {
378808da532bSDmitry Karpeev   PetscFunctionBegin;
37895a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
379008da532bSDmitry Karpeev   dm->ops->computevariablebounds = f;
37913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
379208da532bSDmitry Karpeev }
379308da532bSDmitry Karpeev 
379408da532bSDmitry Karpeev /*@
3795bb7acecfSBarry Smith   DMHasVariableBounds - does the `DM` object have a variable bounds function?
379608da532bSDmitry Karpeev 
379708da532bSDmitry Karpeev   Not Collective
379808da532bSDmitry Karpeev 
379908da532bSDmitry Karpeev   Input Parameter:
3800bb7acecfSBarry Smith . dm - the `DM` object to destroy
380108da532bSDmitry Karpeev 
380208da532bSDmitry Karpeev   Output Parameter:
3803bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the variable bounds function exists
380408da532bSDmitry Karpeev 
380508da532bSDmitry Karpeev   Level: developer
380608da532bSDmitry Karpeev 
38071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
380808da532bSDmitry Karpeev @*/
3809d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasVariableBounds(DM dm, PetscBool *flg)
3810d71ae5a4SJacob Faibussowitsch {
381108da532bSDmitry Karpeev   PetscFunctionBegin;
38125a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
38134f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
381408da532bSDmitry Karpeev   *flg = (dm->ops->computevariablebounds) ? PETSC_TRUE : PETSC_FALSE;
38153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
381608da532bSDmitry Karpeev }
381708da532bSDmitry Karpeev 
3818cc4c1da9SBarry Smith /*@
3819bb7acecfSBarry Smith   DMComputeVariableBounds - compute variable bounds used by `SNESVI`.
382008da532bSDmitry Karpeev 
382120f4b53cSBarry Smith   Logically Collective
382208da532bSDmitry Karpeev 
3823f899ff85SJose E. Roman   Input Parameter:
3824bb7acecfSBarry Smith . dm - the `DM` object
382508da532bSDmitry Karpeev 
382660225df5SJacob Faibussowitsch   Output Parameters:
382708da532bSDmitry Karpeev + xl - lower bound
382808da532bSDmitry Karpeev - xu - upper bound
382908da532bSDmitry Karpeev 
3830907376e6SBarry Smith   Level: advanced
3831907376e6SBarry Smith 
383220f4b53cSBarry Smith   Note:
383395452b02SPatrick Sanan   This is generally not called by users. It calls the function provided by the user with DMSetVariableBounds()
383408da532bSDmitry Karpeev 
38351cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
383608da532bSDmitry Karpeev @*/
3837d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeVariableBounds(DM dm, Vec xl, Vec xu)
3838d71ae5a4SJacob Faibussowitsch {
383908da532bSDmitry Karpeev   PetscFunctionBegin;
38405a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
384108da532bSDmitry Karpeev   PetscValidHeaderSpecific(xl, VEC_CLASSID, 2);
38425a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(xu, VEC_CLASSID, 3);
3843dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, computevariablebounds, xl, xu);
38443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
384508da532bSDmitry Karpeev }
384608da532bSDmitry Karpeev 
3847b0ae01b7SPeter Brune /*@
3848bb7acecfSBarry Smith   DMHasColoring - does the `DM` object have a method of providing a coloring?
3849b0ae01b7SPeter Brune 
3850b0ae01b7SPeter Brune   Not Collective
3851b0ae01b7SPeter Brune 
3852b0ae01b7SPeter Brune   Input Parameter:
3853b0ae01b7SPeter Brune . dm - the DM object
3854b0ae01b7SPeter Brune 
3855b0ae01b7SPeter Brune   Output Parameter:
3856bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateColoring()`.
3857b0ae01b7SPeter Brune 
3858b0ae01b7SPeter Brune   Level: developer
3859b0ae01b7SPeter Brune 
38601cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateColoring()`
3861b0ae01b7SPeter Brune @*/
3862d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasColoring(DM dm, PetscBool *flg)
3863d71ae5a4SJacob Faibussowitsch {
3864b0ae01b7SPeter Brune   PetscFunctionBegin;
38655a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
38664f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
3867b0ae01b7SPeter Brune   *flg = (dm->ops->getcoloring) ? PETSC_TRUE : PETSC_FALSE;
38683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3869b0ae01b7SPeter Brune }
3870b0ae01b7SPeter Brune 
38713ad4599aSBarry Smith /*@
3872bb7acecfSBarry Smith   DMHasCreateRestriction - does the `DM` object have a method of providing a restriction?
38733ad4599aSBarry Smith 
38743ad4599aSBarry Smith   Not Collective
38753ad4599aSBarry Smith 
38763ad4599aSBarry Smith   Input Parameter:
3877bb7acecfSBarry Smith . dm - the `DM` object
38783ad4599aSBarry Smith 
38793ad4599aSBarry Smith   Output Parameter:
3880bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateRestriction()`.
38813ad4599aSBarry Smith 
38823ad4599aSBarry Smith   Level: developer
38833ad4599aSBarry Smith 
38841cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateRestriction()`, `DMHasCreateInterpolation()`, `DMHasCreateInjection()`
38853ad4599aSBarry Smith @*/
3886d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateRestriction(DM dm, PetscBool *flg)
3887d71ae5a4SJacob Faibussowitsch {
38883ad4599aSBarry Smith   PetscFunctionBegin;
38895a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
38904f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
38913ad4599aSBarry Smith   *flg = (dm->ops->createrestriction) ? PETSC_TRUE : PETSC_FALSE;
38923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
38933ad4599aSBarry Smith }
38943ad4599aSBarry Smith 
3895a7058e45SLawrence Mitchell /*@
3896bb7acecfSBarry Smith   DMHasCreateInjection - does the `DM` object have a method of providing an injection?
3897a7058e45SLawrence Mitchell 
3898a7058e45SLawrence Mitchell   Not Collective
3899a7058e45SLawrence Mitchell 
3900a7058e45SLawrence Mitchell   Input Parameter:
3901bb7acecfSBarry Smith . dm - the `DM` object
3902a7058e45SLawrence Mitchell 
3903a7058e45SLawrence Mitchell   Output Parameter:
3904bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateInjection()`.
3905a7058e45SLawrence Mitchell 
3906a7058e45SLawrence Mitchell   Level: developer
3907a7058e45SLawrence Mitchell 
39081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateInjection()`, `DMHasCreateRestriction()`, `DMHasCreateInterpolation()`
3909a7058e45SLawrence Mitchell @*/
3910d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateInjection(DM dm, PetscBool *flg)
3911d71ae5a4SJacob Faibussowitsch {
3912a7058e45SLawrence Mitchell   PetscFunctionBegin;
39135a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
39144f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
3915dbbe0bcdSBarry Smith   if (dm->ops->hascreateinjection) PetscUseTypeMethod(dm, hascreateinjection, flg);
3916ad540459SPierre Jolivet   else *flg = (dm->ops->createinjection) ? PETSC_TRUE : PETSC_FALSE;
39173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3918a7058e45SLawrence Mitchell }
3919a7058e45SLawrence Mitchell 
39200298fd71SBarry Smith PetscFunctionList DMList              = NULL;
3921264ace61SBarry Smith PetscBool         DMRegisterAllCalled = PETSC_FALSE;
3922264ace61SBarry Smith 
3923cc4c1da9SBarry Smith /*@
3924bb7acecfSBarry Smith   DMSetType - Builds a `DM`, for a particular `DM` implementation.
3925264ace61SBarry Smith 
392620f4b53cSBarry Smith   Collective
3927264ace61SBarry Smith 
3928264ace61SBarry Smith   Input Parameters:
3929bb7acecfSBarry Smith + dm     - The `DM` object
3930bb7acecfSBarry Smith - method - The name of the `DMType`, for example `DMDA`, `DMPLEX`
3931264ace61SBarry Smith 
3932264ace61SBarry Smith   Options Database Key:
3933bb7acecfSBarry Smith . -dm_type <type> - Sets the `DM` type; use -help for a list of available types
3934264ace61SBarry Smith 
3935264ace61SBarry Smith   Level: intermediate
3936264ace61SBarry Smith 
3937bb7acecfSBarry Smith   Note:
39380462cc06SPierre Jolivet   Of the `DM` is constructed by directly calling a function to construct a particular `DM`, for example, `DMDACreate2d()` or `DMPlexCreateBoxMesh()`
3939bb7acecfSBarry Smith 
39401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMGetType()`, `DMCreate()`, `DMDACreate2d()`
3941264ace61SBarry Smith @*/
3942d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetType(DM dm, DMType method)
3943d71ae5a4SJacob Faibussowitsch {
3944264ace61SBarry Smith   PetscErrorCode (*r)(DM);
3945264ace61SBarry Smith   PetscBool match;
3946264ace61SBarry Smith 
3947264ace61SBarry Smith   PetscFunctionBegin;
3948264ace61SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
39499566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, method, &match));
39503ba16761SJacob Faibussowitsch   if (match) PetscFunctionReturn(PETSC_SUCCESS);
3951264ace61SBarry Smith 
39529566063dSJacob Faibussowitsch   PetscCall(DMRegisterAll());
39539566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListFind(DMList, method, &r));
39547a8be351SBarry Smith   PetscCheck(r, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown DM type: %s", method);
3955264ace61SBarry Smith 
3956dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, destroy);
39579566063dSJacob Faibussowitsch   PetscCall(PetscMemzero(dm->ops, sizeof(*dm->ops)));
39589566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)dm, method));
39599566063dSJacob Faibussowitsch   PetscCall((*r)(dm));
39603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3961264ace61SBarry Smith }
3962264ace61SBarry Smith 
3963cc4c1da9SBarry Smith /*@
3964bb7acecfSBarry Smith   DMGetType - Gets the `DM` type name (as a string) from the `DM`.
3965264ace61SBarry Smith 
3966264ace61SBarry Smith   Not Collective
3967264ace61SBarry Smith 
3968264ace61SBarry Smith   Input Parameter:
3969bb7acecfSBarry Smith . dm - The `DM`
3970264ace61SBarry Smith 
3971264ace61SBarry Smith   Output Parameter:
3972bb7acecfSBarry Smith . type - The `DMType` name
3973264ace61SBarry Smith 
3974264ace61SBarry Smith   Level: intermediate
3975264ace61SBarry Smith 
39761cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMSetType()`, `DMCreate()`
3977264ace61SBarry Smith @*/
3978d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetType(DM dm, DMType *type)
3979d71ae5a4SJacob Faibussowitsch {
3980264ace61SBarry Smith   PetscFunctionBegin;
3981264ace61SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
39824f572ea9SToby Isaac   PetscAssertPointer(type, 2);
39839566063dSJacob Faibussowitsch   PetscCall(DMRegisterAll());
3984264ace61SBarry Smith   *type = ((PetscObject)dm)->type_name;
39853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3986264ace61SBarry Smith }
3987264ace61SBarry Smith 
39885d83a8b1SBarry Smith /*@
3989bb7acecfSBarry Smith   DMConvert - Converts a `DM` to another `DM`, either of the same or different type.
399067a56275SMatthew G Knepley 
399120f4b53cSBarry Smith   Collective
399267a56275SMatthew G Knepley 
399367a56275SMatthew G Knepley   Input Parameters:
3994bb7acecfSBarry Smith + dm      - the `DM`
3995bb7acecfSBarry Smith - newtype - new `DM` type (use "same" for the same type)
399667a56275SMatthew G Knepley 
399767a56275SMatthew G Knepley   Output Parameter:
3998bb7acecfSBarry Smith . M - pointer to new `DM`
399967a56275SMatthew G Knepley 
400020f4b53cSBarry Smith   Level: intermediate
400120f4b53cSBarry Smith 
400273ff1848SBarry Smith   Note:
4003bb7acecfSBarry Smith   Cannot be used to convert a sequential `DM` to a parallel or a parallel to sequential,
4004bb7acecfSBarry Smith   the MPI communicator of the generated `DM` is always the same as the communicator
4005bb7acecfSBarry Smith   of the input `DM`.
400667a56275SMatthew G Knepley 
40071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMCreate()`, `DMClone()`
400867a56275SMatthew G Knepley @*/
4009d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConvert(DM dm, DMType newtype, DM *M)
4010d71ae5a4SJacob Faibussowitsch {
401167a56275SMatthew G Knepley   DM        B;
401267a56275SMatthew G Knepley   char      convname[256];
4013c067b6caSMatthew G. Knepley   PetscBool sametype /*, issame */;
401467a56275SMatthew G Knepley 
401567a56275SMatthew G Knepley   PetscFunctionBegin;
401667a56275SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
401767a56275SMatthew G Knepley   PetscValidType(dm, 1);
40184f572ea9SToby Isaac   PetscAssertPointer(M, 3);
40199566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, newtype, &sametype));
40209566063dSJacob Faibussowitsch   /* PetscCall(PetscStrcmp(newtype, "same", &issame)); */
4021c067b6caSMatthew G. Knepley   if (sametype) {
4022c067b6caSMatthew G. Knepley     *M = dm;
40239566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
40243ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
4025c067b6caSMatthew G. Knepley   } else {
40260298fd71SBarry Smith     PetscErrorCode (*conv)(DM, DMType, DM *) = NULL;
402767a56275SMatthew G Knepley 
402867a56275SMatthew G Knepley     /*
402967a56275SMatthew G Knepley        Order of precedence:
403067a56275SMatthew G Knepley        1) See if a specialized converter is known to the current DM.
403167a56275SMatthew G Knepley        2) See if a specialized converter is known to the desired DM class.
403267a56275SMatthew G Knepley        3) See if a good general converter is registered for the desired class
403367a56275SMatthew G Knepley        4) See if a good general converter is known for the current matrix.
403467a56275SMatthew G Knepley        5) Use a really basic converter.
403567a56275SMatthew G Knepley     */
403667a56275SMatthew G Knepley 
403767a56275SMatthew G Knepley     /* 1) See if a specialized converter is known to the current DM and the desired class */
40389566063dSJacob Faibussowitsch     PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname)));
40399566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname)));
40409566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_", sizeof(convname)));
40419566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, newtype, sizeof(convname)));
40429566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_C", sizeof(convname)));
40439566063dSJacob Faibussowitsch     PetscCall(PetscObjectQueryFunction((PetscObject)dm, convname, &conv));
404467a56275SMatthew G Knepley     if (conv) goto foundconv;
404567a56275SMatthew G Knepley 
404667a56275SMatthew G Knepley     /* 2)  See if a specialized converter is known to the desired DM class. */
40479566063dSJacob Faibussowitsch     PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &B));
40489566063dSJacob Faibussowitsch     PetscCall(DMSetType(B, newtype));
40499566063dSJacob Faibussowitsch     PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname)));
40509566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname)));
40519566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_", sizeof(convname)));
40529566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, newtype, sizeof(convname)));
40539566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_C", sizeof(convname)));
40549566063dSJacob Faibussowitsch     PetscCall(PetscObjectQueryFunction((PetscObject)B, convname, &conv));
405567a56275SMatthew G Knepley     if (conv) {
40569566063dSJacob Faibussowitsch       PetscCall(DMDestroy(&B));
405767a56275SMatthew G Knepley       goto foundconv;
405867a56275SMatthew G Knepley     }
405967a56275SMatthew G Knepley 
406067a56275SMatthew G Knepley #if 0
406167a56275SMatthew G Knepley     /* 3) See if a good general converter is registered for the desired class */
406267a56275SMatthew G Knepley     conv = B->ops->convertfrom;
40639566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&B));
406467a56275SMatthew G Knepley     if (conv) goto foundconv;
406567a56275SMatthew G Knepley 
406667a56275SMatthew G Knepley     /* 4) See if a good general converter is known for the current matrix */
406767a56275SMatthew G Knepley     if (dm->ops->convert) {
406867a56275SMatthew G Knepley       conv = dm->ops->convert;
406967a56275SMatthew G Knepley     }
407067a56275SMatthew G Knepley     if (conv) goto foundconv;
407167a56275SMatthew G Knepley #endif
407267a56275SMatthew G Knepley 
407367a56275SMatthew G Knepley     /* 5) Use a really basic converter. */
407498921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No conversion possible between DM types %s and %s", ((PetscObject)dm)->type_name, newtype);
407567a56275SMatthew G Knepley 
407667a56275SMatthew G Knepley   foundconv:
40779566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(DM_Convert, dm, 0, 0, 0));
40789566063dSJacob Faibussowitsch     PetscCall((*conv)(dm, newtype, M));
407912fa691eSMatthew G. Knepley     /* Things that are independent of DM type: We should consult DMClone() here */
408090b157c4SStefano Zampini     {
40814fb89dddSMatthew G. Knepley       const PetscReal *maxCell, *Lstart, *L;
40826858538eSMatthew G. Knepley 
40834fb89dddSMatthew G. Knepley       PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
40844fb89dddSMatthew G. Knepley       PetscCall(DMSetPeriodicity(*M, maxCell, Lstart, L));
4085c8a6034eSMark       (*M)->prealloc_only = dm->prealloc_only;
40869566063dSJacob Faibussowitsch       PetscCall(PetscFree((*M)->vectype));
40879566063dSJacob Faibussowitsch       PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*M)->vectype));
40889566063dSJacob Faibussowitsch       PetscCall(PetscFree((*M)->mattype));
40899566063dSJacob Faibussowitsch       PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*M)->mattype));
409012fa691eSMatthew G. Knepley     }
40919566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(DM_Convert, dm, 0, 0, 0));
409267a56275SMatthew G Knepley   }
40939566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)*M));
40943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
409567a56275SMatthew G Knepley }
4096264ace61SBarry Smith 
4097264ace61SBarry Smith /*--------------------------------------------------------------------------------------------------------------------*/
4098264ace61SBarry Smith 
4099264ace61SBarry Smith /*@C
4100bb7acecfSBarry Smith   DMRegister -  Adds a new `DM` type implementation
41011c84c290SBarry Smith 
4102cc4c1da9SBarry Smith   Not Collective, No Fortran Support
41031c84c290SBarry Smith 
41041c84c290SBarry Smith   Input Parameters:
410520f4b53cSBarry Smith + sname    - The name of a new user-defined creation routine
410620f4b53cSBarry Smith - function - The creation routine itself
410720f4b53cSBarry Smith 
410820f4b53cSBarry Smith   Level: advanced
41091c84c290SBarry Smith 
411073ff1848SBarry Smith   Note:
411120f4b53cSBarry Smith   `DMRegister()` may be called multiple times to add several user-defined `DM`s
41121c84c290SBarry Smith 
411360225df5SJacob Faibussowitsch   Example Usage:
41141c84c290SBarry Smith .vb
4115bdf89e91SBarry Smith     DMRegister("my_da", MyDMCreate);
41161c84c290SBarry Smith .ve
41171c84c290SBarry Smith 
411820f4b53cSBarry Smith   Then, your `DM` type can be chosen with the procedural interface via
41191c84c290SBarry Smith .vb
41201c84c290SBarry Smith     DMCreate(MPI_Comm, DM *);
41211c84c290SBarry Smith     DMSetType(DM,"my_da");
41221c84c290SBarry Smith .ve
41231c84c290SBarry Smith   or at runtime via the option
41241c84c290SBarry Smith .vb
41251c84c290SBarry Smith     -da_type my_da
41261c84c290SBarry Smith .ve
4127264ace61SBarry Smith 
41281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMSetType()`, `DMRegisterAll()`, `DMRegisterDestroy()`
4129264ace61SBarry Smith @*/
4130d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRegister(const char sname[], PetscErrorCode (*function)(DM))
4131d71ae5a4SJacob Faibussowitsch {
4132264ace61SBarry Smith   PetscFunctionBegin;
41339566063dSJacob Faibussowitsch   PetscCall(DMInitializePackage());
41349566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListAdd(&DMList, sname, function));
41353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4136264ace61SBarry Smith }
4137264ace61SBarry Smith 
4138ffeef943SBarry Smith /*@
4139bb7acecfSBarry Smith   DMLoad - Loads a DM that has been stored in binary  with `DMView()`.
4140b859378eSBarry Smith 
414120f4b53cSBarry Smith   Collective
4142b859378eSBarry Smith 
4143b859378eSBarry Smith   Input Parameters:
4144bb7acecfSBarry Smith + newdm  - the newly loaded `DM`, this needs to have been created with `DMCreate()` or
4145bb7acecfSBarry Smith            some related function before a call to `DMLoad()`.
4146bb7acecfSBarry Smith - viewer - binary file viewer, obtained from `PetscViewerBinaryOpen()` or
4147bb7acecfSBarry Smith            `PETSCVIEWERHDF5` file viewer, obtained from `PetscViewerHDF5Open()`
4148b859378eSBarry Smith 
4149b859378eSBarry Smith   Level: intermediate
4150b859378eSBarry Smith 
4151b859378eSBarry Smith   Notes:
415255849f57SBarry Smith   The type is determined by the data in the file, any type set into the DM before this call is ignored.
4153b859378eSBarry Smith 
4154bb7acecfSBarry Smith   Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` format, one can save multiple `DMPLEX`
4155bb7acecfSBarry Smith   meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()`
4156bb7acecfSBarry Smith   before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object.
4157cd7e8a5eSksagiyam 
41581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewerBinaryOpen()`, `DMView()`, `MatLoad()`, `VecLoad()`
4159b859378eSBarry Smith @*/
4160d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLoad(DM newdm, PetscViewer viewer)
4161d71ae5a4SJacob Faibussowitsch {
41629331c7a4SMatthew G. Knepley   PetscBool isbinary, ishdf5;
4163b859378eSBarry Smith 
4164b859378eSBarry Smith   PetscFunctionBegin;
4165b859378eSBarry Smith   PetscValidHeaderSpecific(newdm, DM_CLASSID, 1);
4166b859378eSBarry Smith   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
41679566063dSJacob Faibussowitsch   PetscCall(PetscViewerCheckReadable(viewer));
41689566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
41699566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
41709566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_Load, viewer, 0, 0, 0));
41719331c7a4SMatthew G. Knepley   if (isbinary) {
41729331c7a4SMatthew G. Knepley     PetscInt classid;
41739331c7a4SMatthew G. Knepley     char     type[256];
4174b859378eSBarry Smith 
41759566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryRead(viewer, &classid, 1, NULL, PETSC_INT));
4176835f2295SStefano Zampini     PetscCheck(classid == DM_FILE_CLASSID, PetscObjectComm((PetscObject)newdm), PETSC_ERR_ARG_WRONG, "Not DM next in file, classid found %" PetscInt_FMT, classid);
41779566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryRead(viewer, type, 256, NULL, PETSC_CHAR));
41789566063dSJacob Faibussowitsch     PetscCall(DMSetType(newdm, type));
4179dbbe0bcdSBarry Smith     PetscTryTypeMethod(newdm, load, viewer);
41809331c7a4SMatthew G. Knepley   } else if (ishdf5) {
4181dbbe0bcdSBarry Smith     PetscTryTypeMethod(newdm, load, viewer);
41829331c7a4SMatthew G. Knepley   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerBinaryOpen() or PetscViewerHDF5Open()");
41839566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_Load, viewer, 0, 0, 0));
41843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4185b859378eSBarry Smith }
4186b859378eSBarry Smith 
41874ee01570SBarry Smith /* FEM Support */
41887da65231SMatthew G Knepley 
41892ecf6ec3SMatthew G. Knepley PetscErrorCode DMPrintCellIndices(PetscInt c, const char name[], PetscInt len, const PetscInt x[])
41902ecf6ec3SMatthew G. Knepley {
41912ecf6ec3SMatthew G. Knepley   PetscInt f;
41922ecf6ec3SMatthew G. Knepley 
41932ecf6ec3SMatthew G. Knepley   PetscFunctionBegin;
41942ecf6ec3SMatthew G. Knepley   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
41952ecf6ec3SMatthew G. Knepley   for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  | %" PetscInt_FMT " |\n", x[f]));
41962ecf6ec3SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
41972ecf6ec3SMatthew G. Knepley }
41982ecf6ec3SMatthew G. Knepley 
4199d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellVector(PetscInt c, const char name[], PetscInt len, const PetscScalar x[])
4200d71ae5a4SJacob Faibussowitsch {
42011d47ebbbSSatish Balay   PetscInt f;
42021b30c384SMatthew G Knepley 
42037da65231SMatthew G Knepley   PetscFunctionBegin;
420463a3b9bcSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
420548a46eb9SPierre Jolivet   for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  | %g |\n", (double)PetscRealPart(x[f])));
42063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42077da65231SMatthew G Knepley }
42087da65231SMatthew G Knepley 
42095962854dSMatthew G. Knepley PetscErrorCode DMPrintCellVectorReal(PetscInt c, const char name[], PetscInt len, const PetscReal x[])
42105962854dSMatthew G. Knepley {
42115962854dSMatthew G. Knepley   PetscInt f;
42125962854dSMatthew G. Knepley 
42135962854dSMatthew G. Knepley   PetscFunctionBegin;
42145962854dSMatthew G. Knepley   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
42155962854dSMatthew G. Knepley   for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  | %g |\n", (double)x[f]));
42165962854dSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
42175962854dSMatthew G. Knepley }
42185962854dSMatthew G. Knepley 
4219d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellMatrix(PetscInt c, const char name[], PetscInt rows, PetscInt cols, const PetscScalar A[])
4220d71ae5a4SJacob Faibussowitsch {
42211b30c384SMatthew G Knepley   PetscInt f, g;
42227da65231SMatthew G Knepley 
42237da65231SMatthew G Knepley   PetscFunctionBegin;
422463a3b9bcSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
42251d47ebbbSSatish Balay   for (f = 0; f < rows; ++f) {
42269566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PETSC_COMM_SELF, "  |"));
422748a46eb9SPierre Jolivet     for (g = 0; g < cols; ++g) PetscCall(PetscPrintf(PETSC_COMM_SELF, " % 9.5g", (double)PetscRealPart(A[f * cols + g])));
42289566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PETSC_COMM_SELF, " |\n"));
42297da65231SMatthew G Knepley   }
42303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42317da65231SMatthew G Knepley }
4232e7c4fc90SDmitry Karpeev 
4233d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintLocalVec(DM dm, const char name[], PetscReal tol, Vec X)
4234d71ae5a4SJacob Faibussowitsch {
42350c5b8624SToby Isaac   PetscInt           localSize, bs;
42360c5b8624SToby Isaac   PetscMPIInt        size;
42370c5b8624SToby Isaac   Vec                x, xglob;
42380c5b8624SToby Isaac   const PetscScalar *xarray;
4239e759306cSMatthew G. Knepley 
4240e759306cSMatthew G. Knepley   PetscFunctionBegin;
42419566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
42429566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(X, &x));
42439566063dSJacob Faibussowitsch   PetscCall(VecCopy(X, x));
424493ec0da9SPierre Jolivet   PetscCall(VecFilter(x, tol));
42459566063dSJacob Faibussowitsch   PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "%s:\n", name));
42460c5b8624SToby Isaac   if (size > 1) {
42479566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(x, &localSize));
42489566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xarray));
42499566063dSJacob Faibussowitsch     PetscCall(VecGetBlockSize(x, &bs));
42509566063dSJacob Faibussowitsch     PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)dm), bs, localSize, PETSC_DETERMINE, xarray, &xglob));
42510c5b8624SToby Isaac   } else {
42520c5b8624SToby Isaac     xglob = x;
42530c5b8624SToby Isaac   }
42549566063dSJacob Faibussowitsch   PetscCall(VecView(xglob, PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)dm))));
42550c5b8624SToby Isaac   if (size > 1) {
42569566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xglob));
42579566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xarray));
42580c5b8624SToby Isaac   }
42599566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
42603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4261e759306cSMatthew G. Knepley }
4262e759306cSMatthew G. Knepley 
426388ed4aceSMatthew G Knepley /*@
4264bb7acecfSBarry Smith   DMGetLocalSection - Get the `PetscSection` encoding the local data layout for the `DM`.
426588ed4aceSMatthew G Knepley 
426688ed4aceSMatthew G Knepley   Input Parameter:
4267bb7acecfSBarry Smith . dm - The `DM`
426888ed4aceSMatthew G Knepley 
426988ed4aceSMatthew G Knepley   Output Parameter:
4270bb7acecfSBarry Smith . section - The `PetscSection`
427188ed4aceSMatthew G Knepley 
427220f4b53cSBarry Smith   Options Database Key:
4273bb7acecfSBarry Smith . -dm_petscsection_view - View the section created by the `DM`
4274e5893cccSMatthew G. Knepley 
427588ed4aceSMatthew G Knepley   Level: intermediate
427688ed4aceSMatthew G Knepley 
4277bb7acecfSBarry Smith   Note:
4278bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
427988ed4aceSMatthew G Knepley 
42801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetGlobalSection()`
428188ed4aceSMatthew G Knepley @*/
4282d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalSection(DM dm, PetscSection *section)
4283d71ae5a4SJacob Faibussowitsch {
428488ed4aceSMatthew G Knepley   PetscFunctionBegin;
428588ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
42864f572ea9SToby Isaac   PetscAssertPointer(section, 2);
42871bb6d2a8SBarry Smith   if (!dm->localSection && dm->ops->createlocalsection) {
4288e5e52638SMatthew G. Knepley     PetscInt d;
4289e5e52638SMatthew G. Knepley 
429045480ffeSMatthew G. Knepley     if (dm->setfromoptionscalled) {
429145480ffeSMatthew G. Knepley       PetscObject       obj = (PetscObject)dm;
429245480ffeSMatthew G. Knepley       PetscViewer       viewer;
429345480ffeSMatthew G. Knepley       PetscViewerFormat format;
429445480ffeSMatthew G. Knepley       PetscBool         flg;
429545480ffeSMatthew G. Knepley 
4296648c30bcSBarry Smith       PetscCall(PetscOptionsCreateViewer(PetscObjectComm(obj), obj->options, obj->prefix, "-dm_petscds_view", &viewer, &format, &flg));
42979566063dSJacob Faibussowitsch       if (flg) PetscCall(PetscViewerPushFormat(viewer, format));
429845480ffeSMatthew G. Knepley       for (d = 0; d < dm->Nds; ++d) {
42999566063dSJacob Faibussowitsch         PetscCall(PetscDSSetFromOptions(dm->probs[d].ds));
43009566063dSJacob Faibussowitsch         if (flg) PetscCall(PetscDSView(dm->probs[d].ds, viewer));
430145480ffeSMatthew G. Knepley       }
430245480ffeSMatthew G. Knepley       if (flg) {
43039566063dSJacob Faibussowitsch         PetscCall(PetscViewerFlush(viewer));
43049566063dSJacob Faibussowitsch         PetscCall(PetscViewerPopFormat(viewer));
4305648c30bcSBarry Smith         PetscCall(PetscViewerDestroy(&viewer));
430645480ffeSMatthew G. Knepley       }
430745480ffeSMatthew G. Knepley     }
4308dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm, createlocalsection);
43099566063dSJacob Faibussowitsch     if (dm->localSection) PetscCall(PetscObjectViewFromOptions((PetscObject)dm->localSection, NULL, "-dm_petscsection_view"));
43102f0f8703SMatthew G. Knepley   }
43111bb6d2a8SBarry Smith   *section = dm->localSection;
43123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
431388ed4aceSMatthew G Knepley }
431488ed4aceSMatthew G Knepley 
431588ed4aceSMatthew G Knepley /*@
4316bb7acecfSBarry Smith   DMSetLocalSection - Set the `PetscSection` encoding the local data layout for the `DM`.
431788ed4aceSMatthew G Knepley 
431888ed4aceSMatthew G Knepley   Input Parameters:
4319bb7acecfSBarry Smith + dm      - The `DM`
4320bb7acecfSBarry Smith - section - The `PetscSection`
432188ed4aceSMatthew G Knepley 
432288ed4aceSMatthew G Knepley   Level: intermediate
432388ed4aceSMatthew G Knepley 
4324bb7acecfSBarry Smith   Note:
4325bb7acecfSBarry Smith   Any existing Section will be destroyed
432688ed4aceSMatthew G Knepley 
43271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMSetGlobalSection()`
432888ed4aceSMatthew G Knepley @*/
4329d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLocalSection(DM dm, PetscSection section)
4330d71ae5a4SJacob Faibussowitsch {
4331c473ab19SMatthew G. Knepley   PetscInt numFields = 0;
4332af122d2aSMatthew G Knepley   PetscInt f;
433388ed4aceSMatthew G Knepley 
433488ed4aceSMatthew G Knepley   PetscFunctionBegin;
433588ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4336b9d85ea2SLisandro Dalcin   if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
43379566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)section));
43389566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->localSection));
43391bb6d2a8SBarry Smith   dm->localSection = section;
43409566063dSJacob Faibussowitsch   if (section) PetscCall(PetscSectionGetNumFields(dm->localSection, &numFields));
4341af122d2aSMatthew G Knepley   if (numFields) {
43429566063dSJacob Faibussowitsch     PetscCall(DMSetNumFields(dm, numFields));
4343af122d2aSMatthew G Knepley     for (f = 0; f < numFields; ++f) {
43440f21e855SMatthew G. Knepley       PetscObject disc;
4345af122d2aSMatthew G Knepley       const char *name;
4346af122d2aSMatthew G Knepley 
43479566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldName(dm->localSection, f, &name));
43489566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, f, NULL, &disc));
43499566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName(disc, name));
4350af122d2aSMatthew G Knepley     }
4351af122d2aSMatthew G Knepley   }
435250350c8eSStefano Zampini   /* The global section and the SectionSF will be rebuilt
435350350c8eSStefano Zampini      in the next call to DMGetGlobalSection() and DMGetSectionSF(). */
43549566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->globalSection));
435550350c8eSStefano Zampini   PetscCall(PetscSFDestroy(&dm->sectionSF));
435652947b74SStefano Zampini   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF));
435750350c8eSStefano Zampini 
435850350c8eSStefano Zampini   /* Clear scratch vectors */
435950350c8eSStefano Zampini   PetscCall(DMClearGlobalVectors(dm));
436050350c8eSStefano Zampini   PetscCall(DMClearLocalVectors(dm));
436150350c8eSStefano Zampini   PetscCall(DMClearNamedGlobalVectors(dm));
436250350c8eSStefano Zampini   PetscCall(DMClearNamedLocalVectors(dm));
43633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
436488ed4aceSMatthew G Knepley }
436588ed4aceSMatthew G Knepley 
4366adc21957SMatthew G. Knepley /*@C
4367d8b4a066SPierre Jolivet   DMCreateSectionPermutation - Create a permutation of the `PetscSection` chart and optionally a block structure.
4368adc21957SMatthew G. Knepley 
4369adc21957SMatthew G. Knepley   Input Parameter:
4370adc21957SMatthew G. Knepley . dm - The `DM`
4371adc21957SMatthew G. Knepley 
43729cde84edSJose E. Roman   Output Parameters:
4373adc21957SMatthew G. Knepley + perm        - A permutation of the mesh points in the chart
4374b6971eaeSBarry Smith - blockStarts - A high bit is set for the point that begins every block, or `NULL` for default blocking
4375adc21957SMatthew G. Knepley 
4376adc21957SMatthew G. Knepley   Level: developer
4377adc21957SMatthew G. Knepley 
4378adc21957SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMGetGlobalSection()`
4379adc21957SMatthew G. Knepley @*/
4380adc21957SMatthew G. Knepley PetscErrorCode DMCreateSectionPermutation(DM dm, IS *perm, PetscBT *blockStarts)
4381adc21957SMatthew G. Knepley {
4382adc21957SMatthew G. Knepley   PetscFunctionBegin;
4383adc21957SMatthew G. Knepley   *perm        = NULL;
4384adc21957SMatthew G. Knepley   *blockStarts = NULL;
4385adc21957SMatthew G. Knepley   PetscTryTypeMethod(dm, createsectionpermutation, perm, blockStarts);
4386adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
4387adc21957SMatthew G. Knepley }
4388adc21957SMatthew G. Knepley 
43899435951eSToby Isaac /*@
4390bb7acecfSBarry Smith   DMGetDefaultConstraints - Get the `PetscSection` and `Mat` that specify the local constraint interpolation. See `DMSetDefaultConstraints()` for a description of the purpose of constraint interpolation.
43919435951eSToby Isaac 
439220f4b53cSBarry Smith   not Collective
4393e228b242SToby Isaac 
43949435951eSToby Isaac   Input Parameter:
4395bb7acecfSBarry Smith . dm - The `DM`
43969435951eSToby Isaac 
4397d8d19677SJose E. Roman   Output Parameters:
439820f4b53cSBarry Smith + section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section.  Returns `NULL` if there are no local constraints.
439920f4b53cSBarry Smith . mat     - The `Mat` that interpolates local constraints: its width should be the layout size of the default section.  Returns `NULL` if there are no local constraints.
440079769bd5SJed Brown - bias    - Vector containing bias to be added to constrained dofs
44019435951eSToby Isaac 
44029435951eSToby Isaac   Level: advanced
44039435951eSToby Isaac 
4404bb7acecfSBarry Smith   Note:
4405bb7acecfSBarry Smith   This gets borrowed references, so the user should not destroy the `PetscSection`, `Mat`, or `Vec`.
44069435951eSToby Isaac 
44071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDefaultConstraints()`
44089435951eSToby Isaac @*/
4409d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDefaultConstraints(DM dm, PetscSection *section, Mat *mat, Vec *bias)
4410d71ae5a4SJacob Faibussowitsch {
44119435951eSToby Isaac   PetscFunctionBegin;
44129435951eSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4413dbbe0bcdSBarry Smith   if (!dm->defaultConstraint.section && !dm->defaultConstraint.mat && dm->ops->createdefaultconstraints) PetscUseTypeMethod(dm, createdefaultconstraints);
44143b8ba7d1SJed Brown   if (section) *section = dm->defaultConstraint.section;
44153b8ba7d1SJed Brown   if (mat) *mat = dm->defaultConstraint.mat;
441679769bd5SJed Brown   if (bias) *bias = dm->defaultConstraint.bias;
44173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
44189435951eSToby Isaac }
44199435951eSToby Isaac 
44209435951eSToby Isaac /*@
4421bb7acecfSBarry Smith   DMSetDefaultConstraints - Set the `PetscSection` and `Mat` that specify the local constraint interpolation.
44229435951eSToby Isaac 
442320f4b53cSBarry Smith   Collective
4424e228b242SToby Isaac 
44259435951eSToby Isaac   Input Parameters:
4426bb7acecfSBarry Smith + dm      - The `DM`
4427bb7acecfSBarry Smith . section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
442820f4b53cSBarry Smith . mat     - The `Mat` that interpolates local constraints: its width should be the layout size of the default section:  `NULL` indicates no constraints.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
442920f4b53cSBarry Smith - bias    - A bias vector to be added to constrained values in the local vector.  `NULL` indicates no bias.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
44309435951eSToby Isaac 
44319435951eSToby Isaac   Level: advanced
44329435951eSToby Isaac 
443320f4b53cSBarry Smith   Notes:
443420f4b53cSBarry Smith   If a constraint matrix is specified, then it is applied during `DMGlobalToLocalEnd()` when mode is `INSERT_VALUES`, `INSERT_BC_VALUES`, or `INSERT_ALL_VALUES`.  Without a constraint matrix, the local vector l returned by `DMGlobalToLocalEnd()` contains values that have been scattered from a global vector without modification; with a constraint matrix A, l is modified by computing c = A * l + bias, l[s[i]] = c[i], where the scatter s is defined by the `PetscSection` returned by `DMGetDefaultConstraints()`.
443520f4b53cSBarry Smith 
443620f4b53cSBarry Smith   If a constraint matrix is specified, then its adjoint is applied during `DMLocalToGlobalBegin()` when mode is `ADD_VALUES`, `ADD_BC_VALUES`, or `ADD_ALL_VALUES`.  Without a constraint matrix, the local vector l is accumulated into a global vector without modification; with a constraint matrix A, l is first modified by computing c[i] = l[s[i]], l[s[i]] = 0, l = l + A'*c, which is the adjoint of the operation described above.  Any bias, if specified, is ignored when accumulating.
443720f4b53cSBarry Smith 
4438bb7acecfSBarry Smith   This increments the references of the `PetscSection`, `Mat`, and `Vec`, so they user can destroy them.
44399435951eSToby Isaac 
44401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDefaultConstraints()`
44419435951eSToby Isaac @*/
4442d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDefaultConstraints(DM dm, PetscSection section, Mat mat, Vec bias)
4443d71ae5a4SJacob Faibussowitsch {
4444e228b242SToby Isaac   PetscMPIInt result;
44459435951eSToby Isaac 
44469435951eSToby Isaac   PetscFunctionBegin;
44479435951eSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4448e228b242SToby Isaac   if (section) {
4449e228b242SToby Isaac     PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
44509566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)section), &result));
44517a8be351SBarry Smith     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint section must have local communicator");
4452e228b242SToby Isaac   }
4453e228b242SToby Isaac   if (mat) {
4454e228b242SToby Isaac     PetscValidHeaderSpecific(mat, MAT_CLASSID, 3);
44559566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)mat), &result));
44567a8be351SBarry Smith     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint matrix must have local communicator");
4457e228b242SToby Isaac   }
445879769bd5SJed Brown   if (bias) {
445979769bd5SJed Brown     PetscValidHeaderSpecific(bias, VEC_CLASSID, 4);
44609566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)bias), &result));
446179769bd5SJed Brown     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint bias must have local communicator");
446279769bd5SJed Brown   }
44639566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)section));
44649566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->defaultConstraint.section));
44653b8ba7d1SJed Brown   dm->defaultConstraint.section = section;
44669566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)mat));
44679566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&dm->defaultConstraint.mat));
44683b8ba7d1SJed Brown   dm->defaultConstraint.mat = mat;
44699566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)bias));
44709566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&dm->defaultConstraint.bias));
447179769bd5SJed Brown   dm->defaultConstraint.bias = bias;
44723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
44739435951eSToby Isaac }
44749435951eSToby Isaac 
4475497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG)
4476507e4973SMatthew G. Knepley /*
4477bb7acecfSBarry Smith   DMDefaultSectionCheckConsistency - Check the consistentcy of the global and local sections. Generates and error if they are not consistent.
4478507e4973SMatthew G. Knepley 
4479507e4973SMatthew G. Knepley   Input Parameters:
4480bb7acecfSBarry Smith + dm - The `DM`
4481bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout
4482bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout
4483507e4973SMatthew G. Knepley 
4484507e4973SMatthew G. Knepley   Level: intermediate
4485507e4973SMatthew G. Knepley 
44861cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`
4487507e4973SMatthew G. Knepley */
4488d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(DM dm, PetscSection localSection, PetscSection globalSection)
4489d71ae5a4SJacob Faibussowitsch {
4490507e4973SMatthew G. Knepley   MPI_Comm        comm;
4491507e4973SMatthew G. Knepley   PetscLayout     layout;
4492507e4973SMatthew G. Knepley   const PetscInt *ranges;
4493507e4973SMatthew G. Knepley   PetscInt        pStart, pEnd, p, nroots;
4494507e4973SMatthew G. Knepley   PetscMPIInt     size, rank;
4495507e4973SMatthew G. Knepley   PetscBool       valid = PETSC_TRUE, gvalid;
4496507e4973SMatthew G. Knepley 
4497507e4973SMatthew G. Knepley   PetscFunctionBegin;
44989566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
4499507e4973SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
45009566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
45019566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
45029566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(globalSection, &pStart, &pEnd));
45039566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &nroots));
45049566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &layout));
45059566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(layout, 1));
45069566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(layout, nroots));
45079566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(layout));
45089566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(layout, &ranges));
4509507e4973SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
4510f741bcd2SMatthew G. Knepley     PetscInt dof, cdof, off, gdof, gcdof, goff, gsize, d;
4511507e4973SMatthew G. Knepley 
45129566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(localSection, p, &dof));
45139566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(localSection, p, &off));
45149566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetConstraintDof(localSection, p, &cdof));
45159566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(globalSection, p, &gdof));
45169566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetConstraintDof(globalSection, p, &gcdof));
45179566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(globalSection, p, &goff));
4518507e4973SMatthew G. Knepley     if (!gdof) continue; /* Censored point */
45199371c9d4SSatish Balay     if ((gdof < 0 ? -(gdof + 1) : gdof) != dof) {
45209371c9d4SSatish Balay       PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local dof %" PetscInt_FMT "\n", rank, gdof, p, dof));
45219371c9d4SSatish Balay       valid = PETSC_FALSE;
45229371c9d4SSatish Balay     }
45239371c9d4SSatish Balay     if (gcdof && (gcdof != cdof)) {
45249371c9d4SSatish Balay       PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global constraints %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local constraints %" PetscInt_FMT "\n", rank, gcdof, p, cdof));
45259371c9d4SSatish Balay       valid = PETSC_FALSE;
45269371c9d4SSatish Balay     }
4527507e4973SMatthew G. Knepley     if (gdof < 0) {
4528507e4973SMatthew G. Knepley       gsize = gdof < 0 ? -(gdof + 1) - gcdof : gdof - gcdof;
4529507e4973SMatthew G. Knepley       for (d = 0; d < gsize; ++d) {
4530507e4973SMatthew G. Knepley         PetscInt offset = -(goff + 1) + d, r;
4531507e4973SMatthew G. Knepley 
45329566063dSJacob Faibussowitsch         PetscCall(PetscFindInt(offset, size + 1, ranges, &r));
4533507e4973SMatthew G. Knepley         if (r < 0) r = -(r + 2);
45349371c9d4SSatish Balay         if ((r < 0) || (r >= size)) {
45359371c9d4SSatish Balay           PetscCall(PetscSynchronizedPrintf(comm, "[%d]Point %" PetscInt_FMT " mapped to invalid process %" PetscInt_FMT " (%" PetscInt_FMT ", %" PetscInt_FMT ")\n", rank, p, r, gdof, goff));
45369371c9d4SSatish Balay           valid = PETSC_FALSE;
45379371c9d4SSatish Balay           break;
45389371c9d4SSatish Balay         }
4539507e4973SMatthew G. Knepley       }
4540507e4973SMatthew G. Knepley     }
4541507e4973SMatthew G. Knepley   }
45429566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&layout));
45439566063dSJacob Faibussowitsch   PetscCall(PetscSynchronizedFlush(comm, NULL));
4544462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&valid, &gvalid, 1, MPIU_BOOL, MPI_LAND, comm));
4545507e4973SMatthew G. Knepley   if (!gvalid) {
45469566063dSJacob Faibussowitsch     PetscCall(DMView(dm, NULL));
4547507e4973SMatthew G. Knepley     SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Inconsistent local and global sections");
4548507e4973SMatthew G. Knepley   }
45493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4550507e4973SMatthew G. Knepley }
4551f741bcd2SMatthew G. Knepley #endif
4552507e4973SMatthew G. Knepley 
455390df3356SJames Wright PetscErrorCode DMGetIsoperiodicPointSF_Internal(DM dm, PetscSF *sf)
45546725e60dSJed Brown {
45556725e60dSJed Brown   PetscErrorCode (*f)(DM, PetscSF *);
45564d86920dSPierre Jolivet 
45576725e60dSJed Brown   PetscFunctionBegin;
45586725e60dSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
45594f572ea9SToby Isaac   PetscAssertPointer(sf, 2);
45605f06a3ddSJed Brown   PetscCall(PetscObjectQueryFunction((PetscObject)dm, "DMGetIsoperiodicPointSF_C", &f));
45616725e60dSJed Brown   if (f) PetscCall(f(dm, sf));
45626725e60dSJed Brown   else *sf = dm->sf;
45633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
45646725e60dSJed Brown }
45656725e60dSJed Brown 
456688ed4aceSMatthew G Knepley /*@
4567bb7acecfSBarry Smith   DMGetGlobalSection - Get the `PetscSection` encoding the global data layout for the `DM`.
456888ed4aceSMatthew G Knepley 
456920f4b53cSBarry Smith   Collective
45708b1ab98fSJed Brown 
457188ed4aceSMatthew G Knepley   Input Parameter:
4572bb7acecfSBarry Smith . dm - The `DM`
457388ed4aceSMatthew G Knepley 
457488ed4aceSMatthew G Knepley   Output Parameter:
4575bb7acecfSBarry Smith . section - The `PetscSection`
457688ed4aceSMatthew G Knepley 
457788ed4aceSMatthew G Knepley   Level: intermediate
457888ed4aceSMatthew G Knepley 
4579bb7acecfSBarry Smith   Note:
4580bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
458188ed4aceSMatthew G Knepley 
45821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()`
458388ed4aceSMatthew G Knepley @*/
4584d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetGlobalSection(DM dm, PetscSection *section)
4585d71ae5a4SJacob Faibussowitsch {
458688ed4aceSMatthew G Knepley   PetscFunctionBegin;
458788ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
45884f572ea9SToby Isaac   PetscAssertPointer(section, 2);
45891bb6d2a8SBarry Smith   if (!dm->globalSection) {
4590fd59a867SMatthew G. Knepley     PetscSection s;
45916725e60dSJed Brown     PetscSF      sf;
4592fd59a867SMatthew G. Knepley 
45939566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &s));
45947a8be351SBarry Smith     PetscCheck(s, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a default PetscSection in order to create a global PetscSection");
45957a8be351SBarry Smith     PetscCheck(dm->sf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a point PetscSF in order to create a global PetscSection");
45965f06a3ddSJed Brown     PetscCall(DMGetIsoperiodicPointSF_Internal(dm, &sf));
4597eb9d3e4dSMatthew G. Knepley     PetscCall(PetscSectionCreateGlobalSection(s, sf, PETSC_TRUE, PETSC_FALSE, PETSC_FALSE, &dm->globalSection));
45989566063dSJacob Faibussowitsch     PetscCall(PetscLayoutDestroy(&dm->map));
45999566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetValueLayout(PetscObjectComm((PetscObject)dm), dm->globalSection, &dm->map));
46009566063dSJacob Faibussowitsch     PetscCall(PetscSectionViewFromOptions(dm->globalSection, NULL, "-global_section_view"));
460188ed4aceSMatthew G Knepley   }
46021bb6d2a8SBarry Smith   *section = dm->globalSection;
46033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
460488ed4aceSMatthew G Knepley }
460588ed4aceSMatthew G Knepley 
4606b21d0597SMatthew G Knepley /*@
4607bb7acecfSBarry Smith   DMSetGlobalSection - Set the `PetscSection` encoding the global data layout for the `DM`.
4608b21d0597SMatthew G Knepley 
4609b21d0597SMatthew G Knepley   Input Parameters:
4610bb7acecfSBarry Smith + dm      - The `DM`
46112fe279fdSBarry Smith - section - The PetscSection, or `NULL`
4612b21d0597SMatthew G Knepley 
4613b21d0597SMatthew G Knepley   Level: intermediate
4614b21d0597SMatthew G Knepley 
4615bb7acecfSBarry Smith   Note:
4616bb7acecfSBarry Smith   Any existing `PetscSection` will be destroyed
4617b21d0597SMatthew G Knepley 
46181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetGlobalSection()`, `DMSetLocalSection()`
4619b21d0597SMatthew G Knepley @*/
4620d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetGlobalSection(DM dm, PetscSection section)
4621d71ae5a4SJacob Faibussowitsch {
4622b21d0597SMatthew G Knepley   PetscFunctionBegin;
4623b21d0597SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
46245080bbdbSMatthew G Knepley   if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
46259566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)section));
46269566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->globalSection));
46271bb6d2a8SBarry Smith   dm->globalSection = section;
4628497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG)
46299566063dSJacob Faibussowitsch   if (section) PetscCall(DMDefaultSectionCheckConsistency_Internal(dm, dm->localSection, section));
4630507e4973SMatthew G. Knepley #endif
463150350c8eSStefano Zampini   /* Clear global scratch vectors and sectionSF */
463250350c8eSStefano Zampini   PetscCall(PetscSFDestroy(&dm->sectionSF));
463352947b74SStefano Zampini   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF));
463450350c8eSStefano Zampini   PetscCall(DMClearGlobalVectors(dm));
463550350c8eSStefano Zampini   PetscCall(DMClearNamedGlobalVectors(dm));
46363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4637b21d0597SMatthew G Knepley }
4638b21d0597SMatthew G Knepley 
463988ed4aceSMatthew G Knepley /*@
4640bb7acecfSBarry Smith   DMGetSectionSF - Get the `PetscSF` encoding the parallel dof overlap for the `DM`. If it has not been set,
4641bb7acecfSBarry Smith   it is created from the default `PetscSection` layouts in the `DM`.
464288ed4aceSMatthew G Knepley 
464388ed4aceSMatthew G Knepley   Input Parameter:
4644bb7acecfSBarry Smith . dm - The `DM`
464588ed4aceSMatthew G Knepley 
464688ed4aceSMatthew G Knepley   Output Parameter:
4647bb7acecfSBarry Smith . sf - The `PetscSF`
464888ed4aceSMatthew G Knepley 
464988ed4aceSMatthew G Knepley   Level: intermediate
465088ed4aceSMatthew G Knepley 
4651bb7acecfSBarry Smith   Note:
4652bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
465388ed4aceSMatthew G Knepley 
46541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetSectionSF()`, `DMCreateSectionSF()`
465588ed4aceSMatthew G Knepley @*/
4656d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSectionSF(DM dm, PetscSF *sf)
4657d71ae5a4SJacob Faibussowitsch {
465888ed4aceSMatthew G Knepley   PetscInt nroots;
465988ed4aceSMatthew G Knepley 
466088ed4aceSMatthew G Knepley   PetscFunctionBegin;
466188ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
46624f572ea9SToby Isaac   PetscAssertPointer(sf, 2);
466348a46eb9SPierre Jolivet   if (!dm->sectionSF) PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF));
46649566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(dm->sectionSF, &nroots, NULL, NULL, NULL));
466588ed4aceSMatthew G Knepley   if (nroots < 0) {
466688ed4aceSMatthew G Knepley     PetscSection section, gSection;
466788ed4aceSMatthew G Knepley 
46689566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
466931ea6d37SMatthew G Knepley     if (section) {
46709566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalSection(dm, &gSection));
46719566063dSJacob Faibussowitsch       PetscCall(DMCreateSectionSF(dm, section, gSection));
467231ea6d37SMatthew G Knepley     } else {
46730298fd71SBarry Smith       *sf = NULL;
46743ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
467531ea6d37SMatthew G Knepley     }
467688ed4aceSMatthew G Knepley   }
46771bb6d2a8SBarry Smith   *sf = dm->sectionSF;
46783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
467988ed4aceSMatthew G Knepley }
468088ed4aceSMatthew G Knepley 
468188ed4aceSMatthew G Knepley /*@
4682bb7acecfSBarry Smith   DMSetSectionSF - Set the `PetscSF` encoding the parallel dof overlap for the `DM`
468388ed4aceSMatthew G Knepley 
468488ed4aceSMatthew G Knepley   Input Parameters:
4685bb7acecfSBarry Smith + dm - The `DM`
4686bb7acecfSBarry Smith - sf - The `PetscSF`
468788ed4aceSMatthew G Knepley 
468888ed4aceSMatthew G Knepley   Level: intermediate
468988ed4aceSMatthew G Knepley 
4690bb7acecfSBarry Smith   Note:
4691bb7acecfSBarry Smith   Any previous `PetscSF` is destroyed
469288ed4aceSMatthew G Knepley 
46931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMCreateSectionSF()`
469488ed4aceSMatthew G Knepley @*/
4695d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSectionSF(DM dm, PetscSF sf)
4696d71ae5a4SJacob Faibussowitsch {
469788ed4aceSMatthew G Knepley   PetscFunctionBegin;
469888ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4699b9d85ea2SLisandro Dalcin   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
47009566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)sf));
47019566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&dm->sectionSF));
47021bb6d2a8SBarry Smith   dm->sectionSF = sf;
47033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
470488ed4aceSMatthew G Knepley }
470588ed4aceSMatthew G Knepley 
4706cc4c1da9SBarry Smith /*@
4707bb7acecfSBarry Smith   DMCreateSectionSF - Create the `PetscSF` encoding the parallel dof overlap for the `DM` based upon the `PetscSection`s
470888ed4aceSMatthew G Knepley   describing the data layout.
470988ed4aceSMatthew G Knepley 
471088ed4aceSMatthew G Knepley   Input Parameters:
4711bb7acecfSBarry Smith + dm            - The `DM`
4712bb7acecfSBarry Smith . localSection  - `PetscSection` describing the local data layout
4713bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout
471488ed4aceSMatthew G Knepley 
47151bb6d2a8SBarry Smith   Level: developer
47161bb6d2a8SBarry Smith 
4717bb7acecfSBarry Smith   Note:
4718bb7acecfSBarry Smith   One usually uses `DMGetSectionSF()` to obtain the `PetscSF`
4719bb7acecfSBarry Smith 
472073ff1848SBarry Smith   Developer Note:
4721bb7acecfSBarry Smith   Since this routine has for arguments the two sections from the `DM` and puts the resulting `PetscSF`
4722bb7acecfSBarry Smith   directly into the `DM`, perhaps this function should not take the local and global sections as
4723b6971eaeSBarry Smith   input and should just obtain them from the `DM`? Plus PETSc creation functions return the thing
4724b6971eaeSBarry Smith   they create, this returns nothing
47251bb6d2a8SBarry Smith 
47261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMGetLocalSection()`, `DMGetGlobalSection()`
472788ed4aceSMatthew G Knepley @*/
4728d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSectionSF(DM dm, PetscSection localSection, PetscSection globalSection)
4729d71ae5a4SJacob Faibussowitsch {
473088ed4aceSMatthew G Knepley   PetscFunctionBegin;
473188ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
47329566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphSection(dm->sectionSF, localSection, globalSection));
47333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
473488ed4aceSMatthew G Knepley }
4735af122d2aSMatthew G Knepley 
4736b21d0597SMatthew G Knepley /*@
4737bb7acecfSBarry Smith   DMGetPointSF - Get the `PetscSF` encoding the parallel section point overlap for the `DM`.
4738bb7acecfSBarry Smith 
4739bb7acecfSBarry Smith   Not collective but the resulting `PetscSF` is collective
4740b21d0597SMatthew G Knepley 
4741b21d0597SMatthew G Knepley   Input Parameter:
4742bb7acecfSBarry Smith . dm - The `DM`
4743b21d0597SMatthew G Knepley 
4744b21d0597SMatthew G Knepley   Output Parameter:
4745bb7acecfSBarry Smith . sf - The `PetscSF`
4746b21d0597SMatthew G Knepley 
4747b21d0597SMatthew G Knepley   Level: intermediate
4748b21d0597SMatthew G Knepley 
4749bb7acecfSBarry Smith   Note:
4750bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
4751b21d0597SMatthew G Knepley 
47521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()`
4753b21d0597SMatthew G Knepley @*/
4754d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetPointSF(DM dm, PetscSF *sf)
4755d71ae5a4SJacob Faibussowitsch {
4756b21d0597SMatthew G Knepley   PetscFunctionBegin;
4757b21d0597SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
47584f572ea9SToby Isaac   PetscAssertPointer(sf, 2);
4759b21d0597SMatthew G Knepley   *sf = dm->sf;
47603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4761b21d0597SMatthew G Knepley }
4762b21d0597SMatthew G Knepley 
4763057b4bcdSMatthew G Knepley /*@
4764bb7acecfSBarry Smith   DMSetPointSF - Set the `PetscSF` encoding the parallel section point overlap for the `DM`.
4765bb7acecfSBarry Smith 
476620f4b53cSBarry Smith   Collective
4767057b4bcdSMatthew G Knepley 
4768057b4bcdSMatthew G Knepley   Input Parameters:
4769bb7acecfSBarry Smith + dm - The `DM`
4770bb7acecfSBarry Smith - sf - The `PetscSF`
4771057b4bcdSMatthew G Knepley 
4772057b4bcdSMatthew G Knepley   Level: intermediate
4773057b4bcdSMatthew G Knepley 
47741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()`
4775057b4bcdSMatthew G Knepley @*/
4776d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetPointSF(DM dm, PetscSF sf)
4777d71ae5a4SJacob Faibussowitsch {
4778057b4bcdSMatthew G Knepley   PetscFunctionBegin;
4779057b4bcdSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4780b9d85ea2SLisandro Dalcin   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
47819566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)sf));
47829566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&dm->sf));
4783057b4bcdSMatthew G Knepley   dm->sf = sf;
47843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4785057b4bcdSMatthew G Knepley }
4786057b4bcdSMatthew G Knepley 
47874f37162bSMatthew G. Knepley /*@
4788bb7acecfSBarry Smith   DMGetNaturalSF - Get the `PetscSF` encoding the map back to the original mesh ordering
47894f37162bSMatthew G. Knepley 
47904f37162bSMatthew G. Knepley   Input Parameter:
4791bb7acecfSBarry Smith . dm - The `DM`
47924f37162bSMatthew G. Knepley 
47934f37162bSMatthew G. Knepley   Output Parameter:
4794bb7acecfSBarry Smith . sf - The `PetscSF`
47954f37162bSMatthew G. Knepley 
47964f37162bSMatthew G. Knepley   Level: intermediate
47974f37162bSMatthew G. Knepley 
4798bb7acecfSBarry Smith   Note:
4799bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
48004f37162bSMatthew G. Knepley 
48011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()`
48024f37162bSMatthew G. Knepley @*/
4803d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNaturalSF(DM dm, PetscSF *sf)
4804d71ae5a4SJacob Faibussowitsch {
48054f37162bSMatthew G. Knepley   PetscFunctionBegin;
48064f37162bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
48074f572ea9SToby Isaac   PetscAssertPointer(sf, 2);
48084f37162bSMatthew G. Knepley   *sf = dm->sfNatural;
48093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48104f37162bSMatthew G. Knepley }
48114f37162bSMatthew G. Knepley 
48124f37162bSMatthew G. Knepley /*@
48134f37162bSMatthew G. Knepley   DMSetNaturalSF - Set the PetscSF encoding the map back to the original mesh ordering
48144f37162bSMatthew G. Knepley 
48154f37162bSMatthew G. Knepley   Input Parameters:
48164f37162bSMatthew G. Knepley + dm - The DM
48174f37162bSMatthew G. Knepley - sf - The PetscSF
48184f37162bSMatthew G. Knepley 
48194f37162bSMatthew G. Knepley   Level: intermediate
48204f37162bSMatthew G. Knepley 
48211cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()`
48224f37162bSMatthew G. Knepley @*/
4823d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNaturalSF(DM dm, PetscSF sf)
4824d71ae5a4SJacob Faibussowitsch {
48254f37162bSMatthew G. Knepley   PetscFunctionBegin;
48264f37162bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
48274f37162bSMatthew G. Knepley   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
48289566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)sf));
48299566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&dm->sfNatural));
48304f37162bSMatthew G. Knepley   dm->sfNatural = sf;
48313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48324f37162bSMatthew G. Knepley }
48334f37162bSMatthew G. Knepley 
4834d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetDefaultAdjacency_Private(DM dm, PetscInt f, PetscObject disc)
4835d71ae5a4SJacob Faibussowitsch {
483634aa8a36SMatthew G. Knepley   PetscClassId id;
483734aa8a36SMatthew G. Knepley 
483834aa8a36SMatthew G. Knepley   PetscFunctionBegin;
48399566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetClassId(disc, &id));
484034aa8a36SMatthew G. Knepley   if (id == PETSCFE_CLASSID) {
48419566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE));
484234aa8a36SMatthew G. Knepley   } else if (id == PETSCFV_CLASSID) {
48439566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, f, PETSC_TRUE, PETSC_FALSE));
484417c1d62eSMatthew G. Knepley   } else {
48459566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE));
484634aa8a36SMatthew G. Knepley   }
48473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
484834aa8a36SMatthew G. Knepley }
484934aa8a36SMatthew G. Knepley 
4850d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFieldEnlarge_Static(DM dm, PetscInt NfNew)
4851d71ae5a4SJacob Faibussowitsch {
485244a7f3ddSMatthew G. Knepley   RegionField *tmpr;
485344a7f3ddSMatthew G. Knepley   PetscInt     Nf = dm->Nf, f;
485444a7f3ddSMatthew G. Knepley 
485544a7f3ddSMatthew G. Knepley   PetscFunctionBegin;
48563ba16761SJacob Faibussowitsch   if (Nf >= NfNew) PetscFunctionReturn(PETSC_SUCCESS);
48579566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(NfNew, &tmpr));
485844a7f3ddSMatthew G. Knepley   for (f = 0; f < Nf; ++f) tmpr[f] = dm->fields[f];
48599371c9d4SSatish Balay   for (f = Nf; f < NfNew; ++f) {
48609371c9d4SSatish Balay     tmpr[f].disc        = NULL;
48619371c9d4SSatish Balay     tmpr[f].label       = NULL;
48629371c9d4SSatish Balay     tmpr[f].avoidTensor = PETSC_FALSE;
48639371c9d4SSatish Balay   }
48649566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->fields));
486544a7f3ddSMatthew G. Knepley   dm->Nf     = NfNew;
486644a7f3ddSMatthew G. Knepley   dm->fields = tmpr;
48673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
486844a7f3ddSMatthew G. Knepley }
486944a7f3ddSMatthew G. Knepley 
487044a7f3ddSMatthew G. Knepley /*@
487120f4b53cSBarry Smith   DMClearFields - Remove all fields from the `DM`
487244a7f3ddSMatthew G. Knepley 
487320f4b53cSBarry Smith   Logically Collective
487444a7f3ddSMatthew G. Knepley 
487544a7f3ddSMatthew G. Knepley   Input Parameter:
487620f4b53cSBarry Smith . dm - The `DM`
487744a7f3ddSMatthew G. Knepley 
487844a7f3ddSMatthew G. Knepley   Level: intermediate
487944a7f3ddSMatthew G. Knepley 
48801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetNumFields()`, `DMSetField()`
488144a7f3ddSMatthew G. Knepley @*/
4882d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearFields(DM dm)
4883d71ae5a4SJacob Faibussowitsch {
488444a7f3ddSMatthew G. Knepley   PetscInt f;
488544a7f3ddSMatthew G. Knepley 
488644a7f3ddSMatthew G. Knepley   PetscFunctionBegin;
488744a7f3ddSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
488844a7f3ddSMatthew G. Knepley   for (f = 0; f < dm->Nf; ++f) {
48899566063dSJacob Faibussowitsch     PetscCall(PetscObjectDestroy(&dm->fields[f].disc));
48909566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&dm->fields[f].label));
489144a7f3ddSMatthew G. Knepley   }
48929566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->fields));
489344a7f3ddSMatthew G. Knepley   dm->fields = NULL;
489444a7f3ddSMatthew G. Knepley   dm->Nf     = 0;
48953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
489644a7f3ddSMatthew G. Knepley }
489744a7f3ddSMatthew G. Knepley 
4898689b5837SMatthew G. Knepley /*@
489920f4b53cSBarry Smith   DMGetNumFields - Get the number of fields in the `DM`
4900689b5837SMatthew G. Knepley 
490120f4b53cSBarry Smith   Not Collective
4902689b5837SMatthew G. Knepley 
4903689b5837SMatthew G. Knepley   Input Parameter:
490420f4b53cSBarry Smith . dm - The `DM`
4905689b5837SMatthew G. Knepley 
4906689b5837SMatthew G. Knepley   Output Parameter:
490760225df5SJacob Faibussowitsch . numFields - The number of fields
4908689b5837SMatthew G. Knepley 
4909689b5837SMatthew G. Knepley   Level: intermediate
4910689b5837SMatthew G. Knepley 
49111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNumFields()`, `DMSetField()`
4912689b5837SMatthew G. Knepley @*/
4913d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumFields(DM dm, PetscInt *numFields)
4914d71ae5a4SJacob Faibussowitsch {
49150f21e855SMatthew G. Knepley   PetscFunctionBegin;
49160f21e855SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
49174f572ea9SToby Isaac   PetscAssertPointer(numFields, 2);
491844a7f3ddSMatthew G. Knepley   *numFields = dm->Nf;
49193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4920af122d2aSMatthew G Knepley }
4921af122d2aSMatthew G Knepley 
4922689b5837SMatthew G. Knepley /*@
492320f4b53cSBarry Smith   DMSetNumFields - Set the number of fields in the `DM`
4924689b5837SMatthew G. Knepley 
492520f4b53cSBarry Smith   Logically Collective
4926689b5837SMatthew G. Knepley 
4927689b5837SMatthew G. Knepley   Input Parameters:
492820f4b53cSBarry Smith + dm        - The `DM`
492960225df5SJacob Faibussowitsch - numFields - The number of fields
4930689b5837SMatthew G. Knepley 
4931689b5837SMatthew G. Knepley   Level: intermediate
4932689b5837SMatthew G. Knepley 
49331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetField()`
4934689b5837SMatthew G. Knepley @*/
4935d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNumFields(DM dm, PetscInt numFields)
4936d71ae5a4SJacob Faibussowitsch {
49370f21e855SMatthew G. Knepley   PetscInt Nf, f;
4938af122d2aSMatthew G Knepley 
4939af122d2aSMatthew G Knepley   PetscFunctionBegin;
4940af122d2aSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
49419566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
49420f21e855SMatthew G. Knepley   for (f = Nf; f < numFields; ++f) {
49430f21e855SMatthew G. Knepley     PetscContainer obj;
49440f21e855SMatthew G. Knepley 
49459566063dSJacob Faibussowitsch     PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject)dm), &obj));
49469566063dSJacob Faibussowitsch     PetscCall(DMAddField(dm, NULL, (PetscObject)obj));
49479566063dSJacob Faibussowitsch     PetscCall(PetscContainerDestroy(&obj));
4948af122d2aSMatthew G Knepley   }
49493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4950af122d2aSMatthew G Knepley }
4951af122d2aSMatthew G Knepley 
4952c1929be8SMatthew G. Knepley /*@
4953bb7acecfSBarry Smith   DMGetField - Return the `DMLabel` and discretization object for a given `DM` field
4954c1929be8SMatthew G. Knepley 
495520f4b53cSBarry Smith   Not Collective
4956c1929be8SMatthew G. Knepley 
4957c1929be8SMatthew G. Knepley   Input Parameters:
4958bb7acecfSBarry Smith + dm - The `DM`
4959c1929be8SMatthew G. Knepley - f  - The field number
4960c1929be8SMatthew G. Knepley 
496144a7f3ddSMatthew G. Knepley   Output Parameters:
496220f4b53cSBarry Smith + label - The label indicating the support of the field, or `NULL` for the entire mesh (pass in `NULL` if not needed)
496320f4b53cSBarry Smith - disc  - The discretization object (pass in `NULL` if not needed)
4964c1929be8SMatthew G. Knepley 
496544a7f3ddSMatthew G. Knepley   Level: intermediate
4966c1929be8SMatthew G. Knepley 
49671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`
4968c1929be8SMatthew G. Knepley @*/
4969d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetField(DM dm, PetscInt f, DMLabel *label, PetscObject *disc)
4970d71ae5a4SJacob Faibussowitsch {
4971af122d2aSMatthew G Knepley   PetscFunctionBegin;
4972af122d2aSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
49734f572ea9SToby Isaac   PetscAssertPointer(disc, 4);
49747a8be351SBarry Smith   PetscCheck((f >= 0) && (f < dm->Nf), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, dm->Nf);
497544a7f3ddSMatthew G. Knepley   if (label) *label = dm->fields[f].label;
4976bb7acecfSBarry Smith   if (disc) *disc = dm->fields[f].disc;
49773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4978decb47aaSMatthew G. Knepley }
4979decb47aaSMatthew G. Knepley 
4980083401c6SMatthew G. Knepley /* Does not clear the DS */
4981d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField_Internal(DM dm, PetscInt f, DMLabel label, PetscObject disc)
4982d71ae5a4SJacob Faibussowitsch {
4983083401c6SMatthew G. Knepley   PetscFunctionBegin;
49849566063dSJacob Faibussowitsch   PetscCall(DMFieldEnlarge_Static(dm, f + 1));
49859566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&dm->fields[f].label));
49869566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&dm->fields[f].disc));
4987083401c6SMatthew G. Knepley   dm->fields[f].label = label;
4988bb7acecfSBarry Smith   dm->fields[f].disc  = disc;
49899566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
4990835f2295SStefano Zampini   PetscCall(PetscObjectReference(disc));
49913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4992083401c6SMatthew G. Knepley }
4993083401c6SMatthew G. Knepley 
4994ffeef943SBarry Smith /*@
4995bb7acecfSBarry Smith   DMSetField - Set the discretization object for a given `DM` field. Usually one would call `DMAddField()` which automatically handles
4996bb7acecfSBarry Smith   the field numbering.
4997c1929be8SMatthew G. Knepley 
499820f4b53cSBarry Smith   Logically Collective
4999c1929be8SMatthew G. Knepley 
5000c1929be8SMatthew G. Knepley   Input Parameters:
5001bb7acecfSBarry Smith + dm    - The `DM`
5002c1929be8SMatthew G. Knepley . f     - The field number
500320f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh
5004bb7acecfSBarry Smith - disc  - The discretization object
5005c1929be8SMatthew G. Knepley 
500644a7f3ddSMatthew G. Knepley   Level: intermediate
5007c1929be8SMatthew G. Knepley 
50081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`
5009c1929be8SMatthew G. Knepley @*/
5010d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField(DM dm, PetscInt f, DMLabel label, PetscObject disc)
5011d71ae5a4SJacob Faibussowitsch {
5012decb47aaSMatthew G. Knepley   PetscFunctionBegin;
5013decb47aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5014e5e52638SMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3);
5015bb7acecfSBarry Smith   PetscValidHeader(disc, 4);
50167a8be351SBarry Smith   PetscCheck(f >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be non-negative", f);
5017bb7acecfSBarry Smith   PetscCall(DMSetField_Internal(dm, f, label, disc));
5018bb7acecfSBarry Smith   PetscCall(DMSetDefaultAdjacency_Private(dm, f, disc));
50199566063dSJacob Faibussowitsch   PetscCall(DMClearDS(dm));
50203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
502144a7f3ddSMatthew G. Knepley }
502244a7f3ddSMatthew G. Knepley 
5023ffeef943SBarry Smith /*@
5024bb7acecfSBarry Smith   DMAddField - Add a field to a `DM` object. A field is a function space defined by of a set of discretization points (geometric entities)
5025bb7acecfSBarry Smith   and a discretization object that defines the function space associated with those points.
502644a7f3ddSMatthew G. Knepley 
502720f4b53cSBarry Smith   Logically Collective
502844a7f3ddSMatthew G. Knepley 
502944a7f3ddSMatthew G. Knepley   Input Parameters:
5030bb7acecfSBarry Smith + dm    - The `DM`
503120f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh
5032bb7acecfSBarry Smith - disc  - The discretization object
503344a7f3ddSMatthew G. Knepley 
503444a7f3ddSMatthew G. Knepley   Level: intermediate
503544a7f3ddSMatthew G. Knepley 
5036bb7acecfSBarry Smith   Notes:
5037bb7acecfSBarry Smith   The label already exists or will be added to the `DM` with `DMSetLabel()`.
5038bb7acecfSBarry Smith 
5039da81f932SPierre Jolivet   For example, a piecewise continuous pressure field can be defined by coefficients at the cell centers of a mesh and piecewise constant functions
5040bb7acecfSBarry Smith   within each cell. Thus a specific function in the space is defined by the combination of a `Vec` containing the coefficients, a `DM` defining the
5041bb7acecfSBarry Smith   geometry entities, a `DMLabel` indicating a subset of those geometric entities, and a discretization object, such as a `PetscFE`.
5042bb7acecfSBarry Smith 
50431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLabel()`, `DMSetField()`, `DMGetField()`, `PetscFE`
504444a7f3ddSMatthew G. Knepley @*/
5045d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddField(DM dm, DMLabel label, PetscObject disc)
5046d71ae5a4SJacob Faibussowitsch {
504744a7f3ddSMatthew G. Knepley   PetscInt Nf = dm->Nf;
504844a7f3ddSMatthew G. Knepley 
504944a7f3ddSMatthew G. Knepley   PetscFunctionBegin;
505044a7f3ddSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5051064a246eSJacob Faibussowitsch   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
5052bb7acecfSBarry Smith   PetscValidHeader(disc, 3);
50539566063dSJacob Faibussowitsch   PetscCall(DMFieldEnlarge_Static(dm, Nf + 1));
505444a7f3ddSMatthew G. Knepley   dm->fields[Nf].label = label;
5055bb7acecfSBarry Smith   dm->fields[Nf].disc  = disc;
50569566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
5057835f2295SStefano Zampini   PetscCall(PetscObjectReference(disc));
5058bb7acecfSBarry Smith   PetscCall(DMSetDefaultAdjacency_Private(dm, Nf, disc));
50599566063dSJacob Faibussowitsch   PetscCall(DMClearDS(dm));
50603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5061af122d2aSMatthew G Knepley }
50626636e97aSMatthew G Knepley 
5063e5e52638SMatthew G. Knepley /*@
5064e0b68406SMatthew Knepley   DMSetFieldAvoidTensor - Set flag to avoid defining the field on tensor cells
5065e0b68406SMatthew Knepley 
506620f4b53cSBarry Smith   Logically Collective
5067e0b68406SMatthew Knepley 
5068e0b68406SMatthew Knepley   Input Parameters:
5069bb7acecfSBarry Smith + dm          - The `DM`
5070e0b68406SMatthew Knepley . f           - The field index
5071bb7acecfSBarry Smith - avoidTensor - `PETSC_TRUE` to skip defining the field on tensor cells
5072e0b68406SMatthew Knepley 
5073e0b68406SMatthew Knepley   Level: intermediate
5074e0b68406SMatthew Knepley 
50751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()`
5076e0b68406SMatthew Knepley @*/
5077d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFieldAvoidTensor(DM dm, PetscInt f, PetscBool avoidTensor)
5078d71ae5a4SJacob Faibussowitsch {
5079e0b68406SMatthew Knepley   PetscFunctionBegin;
508063a3b9bcSJacob Faibussowitsch   PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf);
5081e0b68406SMatthew Knepley   dm->fields[f].avoidTensor = avoidTensor;
50823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5083e0b68406SMatthew Knepley }
5084e0b68406SMatthew Knepley 
5085e0b68406SMatthew Knepley /*@
5086e0b68406SMatthew Knepley   DMGetFieldAvoidTensor - Get flag to avoid defining the field on tensor cells
5087e0b68406SMatthew Knepley 
508820f4b53cSBarry Smith   Not Collective
5089e0b68406SMatthew Knepley 
5090e0b68406SMatthew Knepley   Input Parameters:
5091bb7acecfSBarry Smith + dm - The `DM`
5092e0b68406SMatthew Knepley - f  - The field index
5093e0b68406SMatthew Knepley 
5094e0b68406SMatthew Knepley   Output Parameter:
5095e0b68406SMatthew Knepley . avoidTensor - The flag to avoid defining the field on tensor cells
5096e0b68406SMatthew Knepley 
5097e0b68406SMatthew Knepley   Level: intermediate
5098e0b68406SMatthew Knepley 
509960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`, `DMGetField()`, `DMSetFieldAvoidTensor()`
5100e0b68406SMatthew Knepley @*/
5101d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFieldAvoidTensor(DM dm, PetscInt f, PetscBool *avoidTensor)
5102d71ae5a4SJacob Faibussowitsch {
5103e0b68406SMatthew Knepley   PetscFunctionBegin;
510463a3b9bcSJacob Faibussowitsch   PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf);
5105e0b68406SMatthew Knepley   *avoidTensor = dm->fields[f].avoidTensor;
51063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5107e0b68406SMatthew Knepley }
5108e0b68406SMatthew Knepley 
5109e0b68406SMatthew Knepley /*@
5110bb7acecfSBarry Smith   DMCopyFields - Copy the discretizations for the `DM` into another `DM`
5111e5e52638SMatthew G. Knepley 
511220f4b53cSBarry Smith   Collective
5113e5e52638SMatthew G. Knepley 
5114bb4b53efSMatthew G. Knepley   Input Parameters:
5115bb4b53efSMatthew G. Knepley + dm        - The `DM`
5116bb4b53efSMatthew G. Knepley . minDegree - Minimum degree for a discretization, or `PETSC_DETERMINE` for no limit
5117bb4b53efSMatthew G. Knepley - maxDegree - Maximum degree for a discretization, or `PETSC_DETERMINE` for no limit
5118e5e52638SMatthew G. Knepley 
5119e5e52638SMatthew G. Knepley   Output Parameter:
5120bb7acecfSBarry Smith . newdm - The `DM`
5121e5e52638SMatthew G. Knepley 
5122e5e52638SMatthew G. Knepley   Level: advanced
5123e5e52638SMatthew G. Knepley 
51241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetField()`, `DMSetField()`, `DMAddField()`, `DMCopyDS()`, `DMGetDS()`, `DMGetCellDS()`
5125e5e52638SMatthew G. Knepley @*/
5126bb4b53efSMatthew G. Knepley PetscErrorCode DMCopyFields(DM dm, PetscInt minDegree, PetscInt maxDegree, DM newdm)
5127d71ae5a4SJacob Faibussowitsch {
5128e5e52638SMatthew G. Knepley   PetscInt Nf, f;
5129e5e52638SMatthew G. Knepley 
5130e5e52638SMatthew G. Knepley   PetscFunctionBegin;
51313ba16761SJacob Faibussowitsch   if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS);
51329566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
51339566063dSJacob Faibussowitsch   PetscCall(DMClearFields(newdm));
5134e5e52638SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
5135e5e52638SMatthew G. Knepley     DMLabel      label;
5136e5e52638SMatthew G. Knepley     PetscObject  field;
5137bb4b53efSMatthew G. Knepley     PetscClassId id;
513834aa8a36SMatthew G. Knepley     PetscBool    useCone, useClosure;
5139e5e52638SMatthew G. Knepley 
51409566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, f, &label, &field));
5141bb4b53efSMatthew G. Knepley     PetscCall(PetscObjectGetClassId(field, &id));
5142bb4b53efSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
5143bb4b53efSMatthew G. Knepley       PetscFE newfe;
5144bb4b53efSMatthew G. Knepley 
5145bb4b53efSMatthew G. Knepley       PetscCall(PetscFELimitDegree((PetscFE)field, minDegree, maxDegree, &newfe));
5146bb4b53efSMatthew G. Knepley       PetscCall(DMSetField(newdm, f, label, (PetscObject)newfe));
5147bb4b53efSMatthew G. Knepley       PetscCall(PetscFEDestroy(&newfe));
5148bb4b53efSMatthew G. Knepley     } else {
51499566063dSJacob Faibussowitsch       PetscCall(DMSetField(newdm, f, label, field));
5150bb4b53efSMatthew G. Knepley     }
51519566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, f, &useCone, &useClosure));
51529566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(newdm, f, useCone, useClosure));
515334aa8a36SMatthew G. Knepley   }
51543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
515534aa8a36SMatthew G. Knepley }
515634aa8a36SMatthew G. Knepley 
515734aa8a36SMatthew G. Knepley /*@
515834aa8a36SMatthew G. Knepley   DMGetAdjacency - Returns the flags for determining variable influence
515934aa8a36SMatthew G. Knepley 
516020f4b53cSBarry Smith   Not Collective
516134aa8a36SMatthew G. Knepley 
516234aa8a36SMatthew G. Knepley   Input Parameters:
516320f4b53cSBarry Smith + dm - The `DM` object
516420f4b53cSBarry Smith - f  - The field number, or `PETSC_DEFAULT` for the default adjacency
516534aa8a36SMatthew G. Knepley 
5166d8d19677SJose E. Roman   Output Parameters:
516734aa8a36SMatthew G. Knepley + useCone    - Flag for variable influence starting with the cone operation
516834aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
516934aa8a36SMatthew G. Knepley 
517034aa8a36SMatthew G. Knepley   Level: developer
517134aa8a36SMatthew G. Knepley 
517220f4b53cSBarry Smith   Notes:
517320f4b53cSBarry Smith .vb
517420f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
517520f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
517620f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
517720f4b53cSBarry Smith .ve
517820f4b53cSBarry Smith   Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another.
517920f4b53cSBarry Smith 
51801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetAdjacency()`, `DMGetField()`, `DMSetField()`
518134aa8a36SMatthew G. Knepley @*/
5182d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAdjacency(DM dm, PetscInt f, PetscBool *useCone, PetscBool *useClosure)
5183d71ae5a4SJacob Faibussowitsch {
518434aa8a36SMatthew G. Knepley   PetscFunctionBegin;
518534aa8a36SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
51864f572ea9SToby Isaac   if (useCone) PetscAssertPointer(useCone, 3);
51874f572ea9SToby Isaac   if (useClosure) PetscAssertPointer(useClosure, 4);
518834aa8a36SMatthew G. Knepley   if (f < 0) {
518934aa8a36SMatthew G. Knepley     if (useCone) *useCone = dm->adjacency[0];
519034aa8a36SMatthew G. Knepley     if (useClosure) *useClosure = dm->adjacency[1];
519134aa8a36SMatthew G. Knepley   } else {
519234aa8a36SMatthew G. Knepley     PetscInt Nf;
519334aa8a36SMatthew G. Knepley 
51949566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
51957a8be351SBarry Smith     PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf);
519634aa8a36SMatthew G. Knepley     if (useCone) *useCone = dm->fields[f].adjacency[0];
519734aa8a36SMatthew G. Knepley     if (useClosure) *useClosure = dm->fields[f].adjacency[1];
519834aa8a36SMatthew G. Knepley   }
51993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
520034aa8a36SMatthew G. Knepley }
520134aa8a36SMatthew G. Knepley 
520234aa8a36SMatthew G. Knepley /*@
520334aa8a36SMatthew G. Knepley   DMSetAdjacency - Set the flags for determining variable influence
520434aa8a36SMatthew G. Knepley 
520520f4b53cSBarry Smith   Not Collective
520634aa8a36SMatthew G. Knepley 
520734aa8a36SMatthew G. Knepley   Input Parameters:
520820f4b53cSBarry Smith + dm         - The `DM` object
520934aa8a36SMatthew G. Knepley . f          - The field number
521034aa8a36SMatthew G. Knepley . useCone    - Flag for variable influence starting with the cone operation
521134aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
521234aa8a36SMatthew G. Knepley 
521334aa8a36SMatthew G. Knepley   Level: developer
521434aa8a36SMatthew G. Knepley 
521520f4b53cSBarry Smith   Notes:
521620f4b53cSBarry Smith .vb
521720f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
521820f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
521920f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
522020f4b53cSBarry Smith .ve
522120f4b53cSBarry Smith   Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another.
522220f4b53cSBarry Smith 
52231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetAdjacency()`, `DMGetField()`, `DMSetField()`
522434aa8a36SMatthew G. Knepley @*/
5225d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAdjacency(DM dm, PetscInt f, PetscBool useCone, PetscBool useClosure)
5226d71ae5a4SJacob Faibussowitsch {
522734aa8a36SMatthew G. Knepley   PetscFunctionBegin;
522834aa8a36SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
522934aa8a36SMatthew G. Knepley   if (f < 0) {
523034aa8a36SMatthew G. Knepley     dm->adjacency[0] = useCone;
523134aa8a36SMatthew G. Knepley     dm->adjacency[1] = useClosure;
523234aa8a36SMatthew G. Knepley   } else {
523334aa8a36SMatthew G. Knepley     PetscInt Nf;
523434aa8a36SMatthew G. Knepley 
52359566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
52367a8be351SBarry Smith     PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf);
523734aa8a36SMatthew G. Knepley     dm->fields[f].adjacency[0] = useCone;
523834aa8a36SMatthew G. Knepley     dm->fields[f].adjacency[1] = useClosure;
5239e5e52638SMatthew G. Knepley   }
52403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5241e5e52638SMatthew G. Knepley }
5242e5e52638SMatthew G. Knepley 
5243b0441da4SMatthew G. Knepley /*@
5244b0441da4SMatthew G. Knepley   DMGetBasicAdjacency - Returns the flags for determining variable influence, using either the default or field 0 if it is defined
5245b0441da4SMatthew G. Knepley 
5246b0441da4SMatthew G. Knepley   Not collective
5247b0441da4SMatthew G. Knepley 
5248f899ff85SJose E. Roman   Input Parameter:
524920f4b53cSBarry Smith . dm - The `DM` object
5250b0441da4SMatthew G. Knepley 
5251d8d19677SJose E. Roman   Output Parameters:
5252b0441da4SMatthew G. Knepley + useCone    - Flag for variable influence starting with the cone operation
5253b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
5254b0441da4SMatthew G. Knepley 
5255b0441da4SMatthew G. Knepley   Level: developer
5256b0441da4SMatthew G. Knepley 
525720f4b53cSBarry Smith   Notes:
525820f4b53cSBarry Smith .vb
525920f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
526020f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
526120f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
526220f4b53cSBarry Smith .ve
526320f4b53cSBarry Smith 
52641cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetBasicAdjacency()`, `DMGetField()`, `DMSetField()`
5265b0441da4SMatthew G. Knepley @*/
5266d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasicAdjacency(DM dm, PetscBool *useCone, PetscBool *useClosure)
5267d71ae5a4SJacob Faibussowitsch {
5268b0441da4SMatthew G. Knepley   PetscInt Nf;
5269b0441da4SMatthew G. Knepley 
5270b0441da4SMatthew G. Knepley   PetscFunctionBegin;
5271b0441da4SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
52724f572ea9SToby Isaac   if (useCone) PetscAssertPointer(useCone, 2);
52734f572ea9SToby Isaac   if (useClosure) PetscAssertPointer(useClosure, 3);
52749566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
5275b0441da4SMatthew G. Knepley   if (!Nf) {
52769566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure));
5277b0441da4SMatthew G. Knepley   } else {
52789566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, 0, useCone, useClosure));
5279b0441da4SMatthew G. Knepley   }
52803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5281b0441da4SMatthew G. Knepley }
5282b0441da4SMatthew G. Knepley 
5283b0441da4SMatthew G. Knepley /*@
5284b0441da4SMatthew G. Knepley   DMSetBasicAdjacency - Set the flags for determining variable influence, using either the default or field 0 if it is defined
5285b0441da4SMatthew G. Knepley 
528620f4b53cSBarry Smith   Not Collective
5287b0441da4SMatthew G. Knepley 
5288b0441da4SMatthew G. Knepley   Input Parameters:
528920f4b53cSBarry Smith + dm         - The `DM` object
5290b0441da4SMatthew G. Knepley . useCone    - Flag for variable influence starting with the cone operation
5291b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
5292b0441da4SMatthew G. Knepley 
5293b0441da4SMatthew G. Knepley   Level: developer
5294b0441da4SMatthew G. Knepley 
529520f4b53cSBarry Smith   Notes:
529620f4b53cSBarry Smith .vb
529720f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
529820f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
529920f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
530020f4b53cSBarry Smith .ve
530120f4b53cSBarry Smith 
53021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetBasicAdjacency()`, `DMGetField()`, `DMSetField()`
5303b0441da4SMatthew G. Knepley @*/
5304d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetBasicAdjacency(DM dm, PetscBool useCone, PetscBool useClosure)
5305d71ae5a4SJacob Faibussowitsch {
5306b0441da4SMatthew G. Knepley   PetscInt Nf;
5307b0441da4SMatthew G. Knepley 
5308b0441da4SMatthew G. Knepley   PetscFunctionBegin;
5309b0441da4SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
53109566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
5311b0441da4SMatthew G. Knepley   if (!Nf) {
53129566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure));
5313b0441da4SMatthew G. Knepley   } else {
53149566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, 0, useCone, useClosure));
5315e5e52638SMatthew G. Knepley   }
53163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5317e5e52638SMatthew G. Knepley }
5318e5e52638SMatthew G. Knepley 
5319d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompleteBCLabels_Internal(DM dm)
5320d71ae5a4SJacob Faibussowitsch {
5321799db056SMatthew G. Knepley   DM           plex;
5322799db056SMatthew G. Knepley   DMLabel     *labels, *glabels;
5323799db056SMatthew G. Knepley   const char **names;
5324799db056SMatthew G. Knepley   char        *sendNames, *recvNames;
5325799db056SMatthew G. Knepley   PetscInt     Nds, s, maxLabels = 0, maxLen = 0, gmaxLen, Nl = 0, gNl, l, gl, m;
5326799db056SMatthew G. Knepley   size_t       len;
5327799db056SMatthew G. Knepley   MPI_Comm     comm;
5328799db056SMatthew G. Knepley   PetscMPIInt  rank, size, p, *counts, *displs;
5329783e2ec8SMatthew G. Knepley 
5330783e2ec8SMatthew G. Knepley   PetscFunctionBegin;
5331799db056SMatthew G. Knepley   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
5332799db056SMatthew G. Knepley   PetscCallMPI(MPI_Comm_size(comm, &size));
5333799db056SMatthew G. Knepley   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5334799db056SMatthew G. Knepley   PetscCall(DMGetNumDS(dm, &Nds));
5335799db056SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5336799db056SMatthew G. Knepley     PetscDS  dsBC;
5337799db056SMatthew G. Knepley     PetscInt numBd;
5338799db056SMatthew G. Knepley 
533907218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL));
5340799db056SMatthew G. Knepley     PetscCall(PetscDSGetNumBoundary(dsBC, &numBd));
5341799db056SMatthew G. Knepley     maxLabels += numBd;
5342799db056SMatthew G. Knepley   }
5343799db056SMatthew G. Knepley   PetscCall(PetscCalloc1(maxLabels, &labels));
5344799db056SMatthew G. Knepley   /* Get list of labels to be completed */
5345799db056SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5346799db056SMatthew G. Knepley     PetscDS  dsBC;
5347799db056SMatthew G. Knepley     PetscInt numBd, bd;
5348799db056SMatthew G. Knepley 
534907218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL));
5350799db056SMatthew G. Knepley     PetscCall(PetscDSGetNumBoundary(dsBC, &numBd));
5351799db056SMatthew G. Knepley     for (bd = 0; bd < numBd; ++bd) {
5352799db056SMatthew G. Knepley       DMLabel      label;
5353799db056SMatthew G. Knepley       PetscInt     field;
5354799db056SMatthew G. Knepley       PetscObject  obj;
5355799db056SMatthew G. Knepley       PetscClassId id;
5356799db056SMatthew G. Knepley 
5357799db056SMatthew G. Knepley       PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL));
53589566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, &obj));
53599566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
5360799db056SMatthew G. Knepley       if (!(id == PETSCFE_CLASSID) || !label) continue;
53619371c9d4SSatish Balay       for (l = 0; l < Nl; ++l)
53629371c9d4SSatish Balay         if (labels[l] == label) break;
5363799db056SMatthew G. Knepley       if (l == Nl) labels[Nl++] = label;
5364783e2ec8SMatthew G. Knepley     }
5365799db056SMatthew G. Knepley   }
5366799db056SMatthew G. Knepley   /* Get label names */
5367799db056SMatthew G. Knepley   PetscCall(PetscMalloc1(Nl, &names));
5368799db056SMatthew G. Knepley   for (l = 0; l < Nl; ++l) PetscCall(PetscObjectGetName((PetscObject)labels[l], &names[l]));
53699371c9d4SSatish Balay   for (l = 0; l < Nl; ++l) {
53709371c9d4SSatish Balay     PetscCall(PetscStrlen(names[l], &len));
53719371c9d4SSatish Balay     maxLen = PetscMax(maxLen, (PetscInt)len + 2);
53729371c9d4SSatish Balay   }
5373799db056SMatthew G. Knepley   PetscCall(PetscFree(labels));
5374462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&maxLen, &gmaxLen, 1, MPIU_INT, MPI_MAX, comm));
5375799db056SMatthew G. Knepley   PetscCall(PetscCalloc1(Nl * gmaxLen, &sendNames));
5376c6a7a370SJeremy L Thompson   for (l = 0; l < Nl; ++l) PetscCall(PetscStrncpy(&sendNames[gmaxLen * l], names[l], gmaxLen));
5377799db056SMatthew G. Knepley   PetscCall(PetscFree(names));
5378799db056SMatthew G. Knepley   /* Put all names on all processes */
5379799db056SMatthew G. Knepley   PetscCall(PetscCalloc2(size, &counts, size + 1, &displs));
5380799db056SMatthew G. Knepley   PetscCallMPI(MPI_Allgather(&Nl, 1, MPI_INT, counts, 1, MPI_INT, comm));
5381799db056SMatthew G. Knepley   for (p = 0; p < size; ++p) displs[p + 1] = displs[p] + counts[p];
5382799db056SMatthew G. Knepley   gNl = displs[size];
53839371c9d4SSatish Balay   for (p = 0; p < size; ++p) {
53849371c9d4SSatish Balay     counts[p] *= gmaxLen;
53859371c9d4SSatish Balay     displs[p] *= gmaxLen;
53869371c9d4SSatish Balay   }
5387799db056SMatthew G. Knepley   PetscCall(PetscCalloc2(gNl * gmaxLen, &recvNames, gNl, &glabels));
5388799db056SMatthew G. Knepley   PetscCallMPI(MPI_Allgatherv(sendNames, counts[rank], MPI_CHAR, recvNames, counts, displs, MPI_CHAR, comm));
5389799db056SMatthew G. Knepley   PetscCall(PetscFree2(counts, displs));
5390799db056SMatthew G. Knepley   PetscCall(PetscFree(sendNames));
5391799db056SMatthew G. Knepley   for (l = 0, gl = 0; l < gNl; ++l) {
5392799db056SMatthew G. Knepley     PetscCall(DMGetLabel(dm, &recvNames[l * gmaxLen], &glabels[gl]));
5393799db056SMatthew G. Knepley     PetscCheck(glabels[gl], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Label %s missing on rank %d", &recvNames[l * gmaxLen], rank);
53949371c9d4SSatish Balay     for (m = 0; m < gl; ++m)
53955d6b2bfcSJames Wright       if (glabels[m] == glabels[gl]) goto next_label;
53969566063dSJacob Faibussowitsch     PetscCall(DMConvert(dm, DMPLEX, &plex));
5397799db056SMatthew G. Knepley     PetscCall(DMPlexLabelComplete(plex, glabels[gl]));
53989566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&plex));
5399799db056SMatthew G. Knepley     ++gl;
54005d6b2bfcSJames Wright   next_label:
54015d6b2bfcSJames Wright     continue;
5402783e2ec8SMatthew G. Knepley   }
5403799db056SMatthew G. Knepley   PetscCall(PetscFree2(recvNames, glabels));
54043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5405783e2ec8SMatthew G. Knepley }
5406783e2ec8SMatthew G. Knepley 
5407d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDSEnlarge_Static(DM dm, PetscInt NdsNew)
5408d71ae5a4SJacob Faibussowitsch {
5409e5e52638SMatthew G. Knepley   DMSpace *tmpd;
5410e5e52638SMatthew G. Knepley   PetscInt Nds = dm->Nds, s;
5411e5e52638SMatthew G. Knepley 
5412e5e52638SMatthew G. Knepley   PetscFunctionBegin;
54133ba16761SJacob Faibussowitsch   if (Nds >= NdsNew) PetscFunctionReturn(PETSC_SUCCESS);
54149566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(NdsNew, &tmpd));
5415e5e52638SMatthew G. Knepley   for (s = 0; s < Nds; ++s) tmpd[s] = dm->probs[s];
54169371c9d4SSatish Balay   for (s = Nds; s < NdsNew; ++s) {
54179371c9d4SSatish Balay     tmpd[s].ds     = NULL;
54189371c9d4SSatish Balay     tmpd[s].label  = NULL;
54199371c9d4SSatish Balay     tmpd[s].fields = NULL;
54209371c9d4SSatish Balay   }
54219566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->probs));
5422e5e52638SMatthew G. Knepley   dm->Nds   = NdsNew;
5423e5e52638SMatthew G. Knepley   dm->probs = tmpd;
54243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5425e5e52638SMatthew G. Knepley }
5426e5e52638SMatthew G. Knepley 
5427e5e52638SMatthew G. Knepley /*@
542820f4b53cSBarry Smith   DMGetNumDS - Get the number of discrete systems in the `DM`
5429e5e52638SMatthew G. Knepley 
543020f4b53cSBarry Smith   Not Collective
5431e5e52638SMatthew G. Knepley 
5432e5e52638SMatthew G. Knepley   Input Parameter:
543320f4b53cSBarry Smith . dm - The `DM`
5434e5e52638SMatthew G. Knepley 
5435e5e52638SMatthew G. Knepley   Output Parameter:
543620f4b53cSBarry Smith . Nds - The number of `PetscDS` objects
5437e5e52638SMatthew G. Knepley 
5438e5e52638SMatthew G. Knepley   Level: intermediate
5439e5e52638SMatthew G. Knepley 
54401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMGetCellDS()`
5441e5e52638SMatthew G. Knepley @*/
5442d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumDS(DM dm, PetscInt *Nds)
5443d71ae5a4SJacob Faibussowitsch {
5444e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5445e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
54464f572ea9SToby Isaac   PetscAssertPointer(Nds, 2);
5447e5e52638SMatthew G. Knepley   *Nds = dm->Nds;
54483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5449e5e52638SMatthew G. Knepley }
5450e5e52638SMatthew G. Knepley 
5451e5e52638SMatthew G. Knepley /*@
545220f4b53cSBarry Smith   DMClearDS - Remove all discrete systems from the `DM`
5453e5e52638SMatthew G. Knepley 
545420f4b53cSBarry Smith   Logically Collective
5455e5e52638SMatthew G. Knepley 
5456e5e52638SMatthew G. Knepley   Input Parameter:
545720f4b53cSBarry Smith . dm - The `DM`
5458e5e52638SMatthew G. Knepley 
5459e5e52638SMatthew G. Knepley   Level: intermediate
5460e5e52638SMatthew G. Knepley 
54611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumDS()`, `DMGetDS()`, `DMSetField()`
5462e5e52638SMatthew G. Knepley @*/
5463d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearDS(DM dm)
5464d71ae5a4SJacob Faibussowitsch {
5465e5e52638SMatthew G. Knepley   PetscInt s;
5466e5e52638SMatthew G. Knepley 
5467e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5468e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5469e5e52638SMatthew G. Knepley   for (s = 0; s < dm->Nds; ++s) {
54709566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dm->probs[s].ds));
547107218a29SMatthew G. Knepley     PetscCall(PetscDSDestroy(&dm->probs[s].dsIn));
54729566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&dm->probs[s].label));
54739566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&dm->probs[s].fields));
5474e5e52638SMatthew G. Knepley   }
54759566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->probs));
5476e5e52638SMatthew G. Knepley   dm->probs = NULL;
5477e5e52638SMatthew G. Knepley   dm->Nds   = 0;
54783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5479e5e52638SMatthew G. Knepley }
5480e5e52638SMatthew G. Knepley 
5481e5e52638SMatthew G. Knepley /*@
548220f4b53cSBarry Smith   DMGetDS - Get the default `PetscDS`
5483e5e52638SMatthew G. Knepley 
548420f4b53cSBarry Smith   Not Collective
5485e5e52638SMatthew G. Knepley 
5486e5e52638SMatthew G. Knepley   Input Parameter:
548720f4b53cSBarry Smith . dm - The `DM`
5488e5e52638SMatthew G. Knepley 
5489e5e52638SMatthew G. Knepley   Output Parameter:
549007218a29SMatthew G. Knepley . ds - The default `PetscDS`
5491e5e52638SMatthew G. Knepley 
5492e5e52638SMatthew G. Knepley   Level: intermediate
5493e5e52638SMatthew G. Knepley 
54941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCellDS()`, `DMGetRegionDS()`
5495e5e52638SMatthew G. Knepley @*/
549607218a29SMatthew G. Knepley PetscErrorCode DMGetDS(DM dm, PetscDS *ds)
5497d71ae5a4SJacob Faibussowitsch {
5498e5e52638SMatthew G. Knepley   PetscFunctionBeginHot;
5499e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
55004f572ea9SToby Isaac   PetscAssertPointer(ds, 2);
550107218a29SMatthew G. Knepley   PetscCheck(dm->Nds > 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Need to call DMCreateDS() before calling DMGetDS()");
550207218a29SMatthew G. Knepley   *ds = dm->probs[0].ds;
55033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5504e5e52638SMatthew G. Knepley }
5505e5e52638SMatthew G. Knepley 
5506e5e52638SMatthew G. Knepley /*@
550720f4b53cSBarry Smith   DMGetCellDS - Get the `PetscDS` defined on a given cell
5508e5e52638SMatthew G. Knepley 
550920f4b53cSBarry Smith   Not Collective
5510e5e52638SMatthew G. Knepley 
5511e5e52638SMatthew G. Knepley   Input Parameters:
551220f4b53cSBarry Smith + dm    - The `DM`
551320f4b53cSBarry Smith - point - Cell for the `PetscDS`
5514e5e52638SMatthew G. Knepley 
551507218a29SMatthew G. Knepley   Output Parameters:
551607218a29SMatthew G. Knepley + ds   - The `PetscDS` defined on the given cell
551707218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or NULL if the same ds
5518e5e52638SMatthew G. Knepley 
5519e5e52638SMatthew G. Knepley   Level: developer
5520e5e52638SMatthew G. Knepley 
55211cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMSetRegionDS()`
5522e5e52638SMatthew G. Knepley @*/
552307218a29SMatthew G. Knepley PetscErrorCode DMGetCellDS(DM dm, PetscInt point, PetscDS *ds, PetscDS *dsIn)
5524d71ae5a4SJacob Faibussowitsch {
552507218a29SMatthew G. Knepley   PetscDS  dsDef = NULL;
5526e5e52638SMatthew G. Knepley   PetscInt s;
5527e5e52638SMatthew G. Knepley 
5528e5e52638SMatthew G. Knepley   PetscFunctionBeginHot;
5529e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
55304f572ea9SToby Isaac   if (ds) PetscAssertPointer(ds, 3);
55314f572ea9SToby Isaac   if (dsIn) PetscAssertPointer(dsIn, 4);
553263a3b9bcSJacob Faibussowitsch   PetscCheck(point >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Mesh point cannot be negative: %" PetscInt_FMT, point);
553307218a29SMatthew G. Knepley   if (ds) *ds = NULL;
553407218a29SMatthew G. Knepley   if (dsIn) *dsIn = NULL;
5535e5e52638SMatthew G. Knepley   for (s = 0; s < dm->Nds; ++s) {
5536e5e52638SMatthew G. Knepley     PetscInt val;
5537e5e52638SMatthew G. Knepley 
55389371c9d4SSatish Balay     if (!dm->probs[s].label) {
553907218a29SMatthew G. Knepley       dsDef = dm->probs[s].ds;
55409371c9d4SSatish Balay     } else {
55419566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(dm->probs[s].label, point, &val));
55429371c9d4SSatish Balay       if (val >= 0) {
554307218a29SMatthew G. Knepley         if (ds) *ds = dm->probs[s].ds;
554407218a29SMatthew G. Knepley         if (dsIn) *dsIn = dm->probs[s].dsIn;
55459371c9d4SSatish Balay         break;
55469371c9d4SSatish Balay       }
5547e5e52638SMatthew G. Knepley     }
5548e5e52638SMatthew G. Knepley   }
554907218a29SMatthew G. Knepley   if (ds && !*ds) *ds = dsDef;
55503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5551e5e52638SMatthew G. Knepley }
5552e5e52638SMatthew G. Knepley 
5553e5e52638SMatthew G. Knepley /*@
555420f4b53cSBarry Smith   DMGetRegionDS - Get the `PetscDS` for a given mesh region, defined by a `DMLabel`
5555e5e52638SMatthew G. Knepley 
555620f4b53cSBarry Smith   Not Collective
5557e5e52638SMatthew G. Knepley 
5558e5e52638SMatthew G. Knepley   Input Parameters:
555920f4b53cSBarry Smith + dm    - The `DM`
556020f4b53cSBarry Smith - label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh
5561e5e52638SMatthew G. Knepley 
5562b3cf3223SMatthew G. Knepley   Output Parameters:
556320f4b53cSBarry Smith + fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL`
556407218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region, or `NULL`
556507218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input in the given region, or `NULL`
5566e5e52638SMatthew G. Knepley 
5567e5e52638SMatthew G. Knepley   Level: advanced
5568e5e52638SMatthew G. Knepley 
556920f4b53cSBarry Smith   Note:
557020f4b53cSBarry Smith   If a non-`NULL` label is given, but there is no `PetscDS` on that specific label,
557120f4b53cSBarry Smith   the `PetscDS` for the full domain (if present) is returned. Returns with
557207218a29SMatthew G. Knepley   fields = `NULL` and ds = `NULL` if there is no `PetscDS` for the full domain.
557320f4b53cSBarry Smith 
55741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5575e5e52638SMatthew G. Knepley @*/
557607218a29SMatthew G. Knepley PetscErrorCode DMGetRegionDS(DM dm, DMLabel label, IS *fields, PetscDS *ds, PetscDS *dsIn)
5577d71ae5a4SJacob Faibussowitsch {
5578e5e52638SMatthew G. Knepley   PetscInt Nds = dm->Nds, s;
5579e5e52638SMatthew G. Knepley 
5580e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5581e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5582e5e52638SMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
55839371c9d4SSatish Balay   if (fields) {
55844f572ea9SToby Isaac     PetscAssertPointer(fields, 3);
55859371c9d4SSatish Balay     *fields = NULL;
55869371c9d4SSatish Balay   }
55879371c9d4SSatish Balay   if (ds) {
55884f572ea9SToby Isaac     PetscAssertPointer(ds, 4);
55899371c9d4SSatish Balay     *ds = NULL;
55909371c9d4SSatish Balay   }
559107218a29SMatthew G. Knepley   if (dsIn) {
55924f572ea9SToby Isaac     PetscAssertPointer(dsIn, 5);
559307218a29SMatthew G. Knepley     *dsIn = NULL;
559407218a29SMatthew G. Knepley   }
5595e5e52638SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5596154ca461SJed Brown     if (dm->probs[s].label == label || !dm->probs[s].label) {
5597b3cf3223SMatthew G. Knepley       if (fields) *fields = dm->probs[s].fields;
5598b3cf3223SMatthew G. Knepley       if (ds) *ds = dm->probs[s].ds;
559907218a29SMatthew G. Knepley       if (dsIn) *dsIn = dm->probs[s].dsIn;
56003ba16761SJacob Faibussowitsch       if (dm->probs[s].label) PetscFunctionReturn(PETSC_SUCCESS);
5601b3cf3223SMatthew G. Knepley     }
5602e5e52638SMatthew G. Knepley   }
56033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5604e5e52638SMatthew G. Knepley }
5605e5e52638SMatthew G. Knepley 
5606e5e52638SMatthew G. Knepley /*@
5607bb7acecfSBarry Smith   DMSetRegionDS - Set the `PetscDS` for a given mesh region, defined by a `DMLabel`
5608083401c6SMatthew G. Knepley 
560920f4b53cSBarry Smith   Collective
5610083401c6SMatthew G. Knepley 
5611083401c6SMatthew G. Knepley   Input Parameters:
5612bb7acecfSBarry Smith + dm     - The `DM`
561320f4b53cSBarry Smith . label  - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh
561407218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` for all fields
561507218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region
561607218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS`
5617083401c6SMatthew G. Knepley 
561820f4b53cSBarry Smith   Level: advanced
561920f4b53cSBarry Smith 
5620bb7acecfSBarry Smith   Note:
5621bb7acecfSBarry Smith   If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`. If the `PetscDS` is replaced,
5622083401c6SMatthew G. Knepley   the fields argument is ignored.
5623083401c6SMatthew G. Knepley 
56241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionNumDS()`, `DMGetDS()`, `DMGetCellDS()`
5625083401c6SMatthew G. Knepley @*/
562607218a29SMatthew G. Knepley PetscErrorCode DMSetRegionDS(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn)
5627d71ae5a4SJacob Faibussowitsch {
5628083401c6SMatthew G. Knepley   PetscInt Nds = dm->Nds, s;
5629083401c6SMatthew G. Knepley 
5630083401c6SMatthew G. Knepley   PetscFunctionBegin;
5631083401c6SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5632083401c6SMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
563307218a29SMatthew G. Knepley   if (fields) PetscValidHeaderSpecific(fields, IS_CLASSID, 3);
5634064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 4);
563507218a29SMatthew G. Knepley   if (dsIn) PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 5);
5636083401c6SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5637083401c6SMatthew G. Knepley     if (dm->probs[s].label == label) {
56389566063dSJacob Faibussowitsch       PetscCall(PetscDSDestroy(&dm->probs[s].ds));
563907218a29SMatthew G. Knepley       PetscCall(PetscDSDestroy(&dm->probs[s].dsIn));
5640083401c6SMatthew G. Knepley       dm->probs[s].ds   = ds;
564107218a29SMatthew G. Knepley       dm->probs[s].dsIn = dsIn;
56423ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
5643083401c6SMatthew G. Knepley     }
5644083401c6SMatthew G. Knepley   }
56459566063dSJacob Faibussowitsch   PetscCall(DMDSEnlarge_Static(dm, Nds + 1));
56469566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
56479566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)fields));
56489566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)ds));
564907218a29SMatthew G. Knepley   PetscCall(PetscObjectReference((PetscObject)dsIn));
5650083401c6SMatthew G. Knepley   if (!label) {
5651083401c6SMatthew G. Knepley     /* Put the NULL label at the front, so it is returned as the default */
5652083401c6SMatthew G. Knepley     for (s = Nds - 1; s >= 0; --s) dm->probs[s + 1] = dm->probs[s];
5653083401c6SMatthew G. Knepley     Nds = 0;
5654083401c6SMatthew G. Knepley   }
5655083401c6SMatthew G. Knepley   dm->probs[Nds].label  = label;
5656083401c6SMatthew G. Knepley   dm->probs[Nds].fields = fields;
5657083401c6SMatthew G. Knepley   dm->probs[Nds].ds     = ds;
565807218a29SMatthew G. Knepley   dm->probs[Nds].dsIn   = dsIn;
56593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5660083401c6SMatthew G. Knepley }
5661083401c6SMatthew G. Knepley 
5662083401c6SMatthew G. Knepley /*@
566320f4b53cSBarry Smith   DMGetRegionNumDS - Get the `PetscDS` for a given mesh region, defined by the region number
5664e5e52638SMatthew G. Knepley 
566520f4b53cSBarry Smith   Not Collective
5666e5e52638SMatthew G. Knepley 
5667e5e52638SMatthew G. Knepley   Input Parameters:
566820f4b53cSBarry Smith + dm  - The `DM`
5669e5e52638SMatthew G. Knepley - num - The region number, in [0, Nds)
5670e5e52638SMatthew G. Knepley 
5671e5e52638SMatthew G. Knepley   Output Parameters:
567220f4b53cSBarry Smith + label  - The region label, or `NULL`
567320f4b53cSBarry Smith . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL`
567407218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region, or `NULL`
567507218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input in the given region, or `NULL`
5676e5e52638SMatthew G. Knepley 
5677e5e52638SMatthew G. Knepley   Level: advanced
5678e5e52638SMatthew G. Knepley 
56791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5680e5e52638SMatthew G. Knepley @*/
568107218a29SMatthew G. Knepley PetscErrorCode DMGetRegionNumDS(DM dm, PetscInt num, DMLabel *label, IS *fields, PetscDS *ds, PetscDS *dsIn)
5682d71ae5a4SJacob Faibussowitsch {
5683e5e52638SMatthew G. Knepley   PetscInt Nds;
5684e5e52638SMatthew G. Knepley 
5685e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5686e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
56879566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
568863a3b9bcSJacob Faibussowitsch   PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds);
5689e5e52638SMatthew G. Knepley   if (label) {
56904f572ea9SToby Isaac     PetscAssertPointer(label, 3);
5691e5e52638SMatthew G. Knepley     *label = dm->probs[num].label;
5692e5e52638SMatthew G. Knepley   }
5693b3cf3223SMatthew G. Knepley   if (fields) {
56944f572ea9SToby Isaac     PetscAssertPointer(fields, 4);
5695b3cf3223SMatthew G. Knepley     *fields = dm->probs[num].fields;
5696b3cf3223SMatthew G. Knepley   }
5697e5e52638SMatthew G. Knepley   if (ds) {
56984f572ea9SToby Isaac     PetscAssertPointer(ds, 5);
5699e5e52638SMatthew G. Knepley     *ds = dm->probs[num].ds;
5700e5e52638SMatthew G. Knepley   }
570107218a29SMatthew G. Knepley   if (dsIn) {
57024f572ea9SToby Isaac     PetscAssertPointer(dsIn, 6);
570307218a29SMatthew G. Knepley     *dsIn = dm->probs[num].dsIn;
570407218a29SMatthew G. Knepley   }
57053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5706e5e52638SMatthew G. Knepley }
5707e5e52638SMatthew G. Knepley 
5708e5e52638SMatthew G. Knepley /*@
570920f4b53cSBarry Smith   DMSetRegionNumDS - Set the `PetscDS` for a given mesh region, defined by the region number
5710e5e52638SMatthew G. Knepley 
571120f4b53cSBarry Smith   Not Collective
5712e5e52638SMatthew G. Knepley 
5713e5e52638SMatthew G. Knepley   Input Parameters:
571420f4b53cSBarry Smith + dm     - The `DM`
5715083401c6SMatthew G. Knepley . num    - The region number, in [0, Nds)
571620f4b53cSBarry Smith . label  - The region label, or `NULL`
571707218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` to prevent setting
571807218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region, or `NULL` to prevent setting
571907218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS`
5720e5e52638SMatthew G. Knepley 
5721e5e52638SMatthew G. Knepley   Level: advanced
5722e5e52638SMatthew G. Knepley 
57231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5724e5e52638SMatthew G. Knepley @*/
572507218a29SMatthew G. Knepley PetscErrorCode DMSetRegionNumDS(DM dm, PetscInt num, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn)
5726d71ae5a4SJacob Faibussowitsch {
5727083401c6SMatthew G. Knepley   PetscInt Nds;
5728e5e52638SMatthew G. Knepley 
5729e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5730e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5731ad540459SPierre Jolivet   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3);
57329566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
573363a3b9bcSJacob Faibussowitsch   PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds);
57349566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
57359566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&dm->probs[num].label));
5736083401c6SMatthew G. Knepley   dm->probs[num].label = label;
5737083401c6SMatthew G. Knepley   if (fields) {
5738083401c6SMatthew G. Knepley     PetscValidHeaderSpecific(fields, IS_CLASSID, 4);
57399566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)fields));
57409566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&dm->probs[num].fields));
5741083401c6SMatthew G. Knepley     dm->probs[num].fields = fields;
5742e5e52638SMatthew G. Knepley   }
5743083401c6SMatthew G. Knepley   if (ds) {
5744083401c6SMatthew G. Knepley     PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 5);
57459566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)ds));
57469566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dm->probs[num].ds));
5747083401c6SMatthew G. Knepley     dm->probs[num].ds = ds;
5748083401c6SMatthew G. Knepley   }
574907218a29SMatthew G. Knepley   if (dsIn) {
575007218a29SMatthew G. Knepley     PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 6);
575107218a29SMatthew G. Knepley     PetscCall(PetscObjectReference((PetscObject)dsIn));
575207218a29SMatthew G. Knepley     PetscCall(PetscDSDestroy(&dm->probs[num].dsIn));
575307218a29SMatthew G. Knepley     dm->probs[num].dsIn = dsIn;
575407218a29SMatthew G. Knepley   }
57553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5756e5e52638SMatthew G. Knepley }
5757e5e52638SMatthew G. Knepley 
5758e5e52638SMatthew G. Knepley /*@
575920f4b53cSBarry Smith   DMFindRegionNum - Find the region number for a given `PetscDS`, or -1 if it is not found.
57601d3af9e0SMatthew G. Knepley 
576120f4b53cSBarry Smith   Not Collective
57621d3af9e0SMatthew G. Knepley 
57631d3af9e0SMatthew G. Knepley   Input Parameters:
576420f4b53cSBarry Smith + dm - The `DM`
576520f4b53cSBarry Smith - ds - The `PetscDS` defined on the given region
57661d3af9e0SMatthew G. Knepley 
57671d3af9e0SMatthew G. Knepley   Output Parameter:
57681d3af9e0SMatthew G. Knepley . num - The region number, in [0, Nds), or -1 if not found
57691d3af9e0SMatthew G. Knepley 
57701d3af9e0SMatthew G. Knepley   Level: advanced
57711d3af9e0SMatthew G. Knepley 
57721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
57731d3af9e0SMatthew G. Knepley @*/
5774d71ae5a4SJacob Faibussowitsch PetscErrorCode DMFindRegionNum(DM dm, PetscDS ds, PetscInt *num)
5775d71ae5a4SJacob Faibussowitsch {
57761d3af9e0SMatthew G. Knepley   PetscInt Nds, n;
57771d3af9e0SMatthew G. Knepley 
57781d3af9e0SMatthew G. Knepley   PetscFunctionBegin;
57791d3af9e0SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
57801d3af9e0SMatthew G. Knepley   PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 2);
57814f572ea9SToby Isaac   PetscAssertPointer(num, 3);
57829566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
57839371c9d4SSatish Balay   for (n = 0; n < Nds; ++n)
57849371c9d4SSatish Balay     if (ds == dm->probs[n].ds) break;
57851d3af9e0SMatthew G. Knepley   if (n >= Nds) *num = -1;
57861d3af9e0SMatthew G. Knepley   else *num = n;
57873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
57881d3af9e0SMatthew G. Knepley }
57891d3af9e0SMatthew G. Knepley 
5790cc4c1da9SBarry Smith /*@
5791bb7acecfSBarry Smith   DMCreateFEDefault - Create a `PetscFE` based on the celltype for the mesh
57922df84da0SMatthew G. Knepley 
579320f4b53cSBarry Smith   Not Collective
57942df84da0SMatthew G. Knepley 
5795f1a722f8SMatthew G. Knepley   Input Parameters:
5796bb7acecfSBarry Smith + dm     - The `DM`
57972df84da0SMatthew G. Knepley . Nc     - The number of components for the field
579820f4b53cSBarry Smith . prefix - The options prefix for the output `PetscFE`, or `NULL`
5799bb7acecfSBarry Smith - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree
58002df84da0SMatthew G. Knepley 
58012df84da0SMatthew G. Knepley   Output Parameter:
5802bb7acecfSBarry Smith . fem - The `PetscFE`
58032df84da0SMatthew G. Knepley 
580420f4b53cSBarry Smith   Level: intermediate
580520f4b53cSBarry Smith 
5806bb7acecfSBarry Smith   Note:
5807bb7acecfSBarry Smith   This is a convenience method that just calls `PetscFECreateByCell()` underneath.
58082df84da0SMatthew G. Knepley 
58091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscFECreateByCell()`, `DMAddField()`, `DMCreateDS()`, `DMGetCellDS()`, `DMGetRegionDS()`
58102df84da0SMatthew G. Knepley @*/
5811d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFEDefault(DM dm, PetscInt Nc, const char prefix[], PetscInt qorder, PetscFE *fem)
5812d71ae5a4SJacob Faibussowitsch {
58132df84da0SMatthew G. Knepley   DMPolytopeType ct;
58142df84da0SMatthew G. Knepley   PetscInt       dim, cStart;
58152df84da0SMatthew G. Knepley 
58162df84da0SMatthew G. Knepley   PetscFunctionBegin;
58172df84da0SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
58182df84da0SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, Nc, 2);
58194f572ea9SToby Isaac   if (prefix) PetscAssertPointer(prefix, 3);
58202df84da0SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, qorder, 4);
58214f572ea9SToby Isaac   PetscAssertPointer(fem, 5);
58229566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
58239566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL));
58249566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCellType(dm, cStart, &ct));
58259566063dSJacob Faibussowitsch   PetscCall(PetscFECreateByCell(PETSC_COMM_SELF, dim, Nc, ct, prefix, qorder, fem));
58263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
58272df84da0SMatthew G. Knepley }
58282df84da0SMatthew G. Knepley 
58291d3af9e0SMatthew G. Knepley /*@
5830bb7acecfSBarry Smith   DMCreateDS - Create the discrete systems for the `DM` based upon the fields added to the `DM`
5831e5e52638SMatthew G. Knepley 
583220f4b53cSBarry Smith   Collective
5833e5e52638SMatthew G. Knepley 
5834e5e52638SMatthew G. Knepley   Input Parameter:
5835bb7acecfSBarry Smith . dm - The `DM`
5836e5e52638SMatthew G. Knepley 
583720f4b53cSBarry Smith   Options Database Key:
5838bb7acecfSBarry Smith . -dm_petscds_view - View all the `PetscDS` objects in this `DM`
583945480ffeSMatthew G. Knepley 
584020f4b53cSBarry Smith   Level: intermediate
584120f4b53cSBarry Smith 
58421cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetField`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`
5843e5e52638SMatthew G. Knepley @*/
5844d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDS(DM dm)
5845d71ae5a4SJacob Faibussowitsch {
5846e5e52638SMatthew G. Knepley   MPI_Comm  comm;
5847083401c6SMatthew G. Knepley   PetscDS   dsDef;
5848083401c6SMatthew G. Knepley   DMLabel  *labelSet;
5849f9244615SMatthew G. Knepley   PetscInt  dE, Nf = dm->Nf, f, s, Nl, l, Ndef, k;
5850f9244615SMatthew G. Knepley   PetscBool doSetup = PETSC_TRUE, flg;
5851e5e52638SMatthew G. Knepley 
5852e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5853e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
58543ba16761SJacob Faibussowitsch   if (!dm->fields) PetscFunctionReturn(PETSC_SUCCESS);
58559566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
58569566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dE));
5857083401c6SMatthew G. Knepley   /* Determine how many regions we have */
58589566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Nf, &labelSet));
5859083401c6SMatthew G. Knepley   Nl   = 0;
5860083401c6SMatthew G. Knepley   Ndef = 0;
5861083401c6SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
5862083401c6SMatthew G. Knepley     DMLabel  label = dm->fields[f].label;
5863083401c6SMatthew G. Knepley     PetscInt l;
5864083401c6SMatthew G. Knepley 
5865f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED
5866f918ec44SMatthew G. Knepley     /* Move CEED context to discretizations */
5867f918ec44SMatthew G. Knepley     {
5868f918ec44SMatthew G. Knepley       PetscClassId id;
5869f918ec44SMatthew G. Knepley 
58709566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(dm->fields[f].disc, &id));
5871f918ec44SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
5872f918ec44SMatthew G. Knepley         Ceed ceed;
5873f918ec44SMatthew G. Knepley 
58749566063dSJacob Faibussowitsch         PetscCall(DMGetCeed(dm, &ceed));
58759566063dSJacob Faibussowitsch         PetscCall(PetscFESetCeed((PetscFE)dm->fields[f].disc, ceed));
5876f918ec44SMatthew G. Knepley       }
5877f918ec44SMatthew G. Knepley     }
5878f918ec44SMatthew G. Knepley #endif
58799371c9d4SSatish Balay     if (!label) {
58809371c9d4SSatish Balay       ++Ndef;
58819371c9d4SSatish Balay       continue;
58829371c9d4SSatish Balay     }
58839371c9d4SSatish Balay     for (l = 0; l < Nl; ++l)
58849371c9d4SSatish Balay       if (label == labelSet[l]) break;
5885083401c6SMatthew G. Knepley     if (l < Nl) continue;
5886083401c6SMatthew G. Knepley     labelSet[Nl++] = label;
5887083401c6SMatthew G. Knepley   }
5888083401c6SMatthew G. Knepley   /* Create default DS if there are no labels to intersect with */
588907218a29SMatthew G. Knepley   PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL));
5890083401c6SMatthew G. Knepley   if (!dsDef && Ndef && !Nl) {
5891b3cf3223SMatthew G. Knepley     IS        fields;
5892b3cf3223SMatthew G. Knepley     PetscInt *fld, nf;
5893b3cf3223SMatthew G. Knepley 
58949371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
58959371c9d4SSatish Balay       if (!dm->fields[f].label) ++nf;
58967a8be351SBarry Smith     PetscCheck(nf, comm, PETSC_ERR_PLIB, "All fields have labels, but we are trying to create a default DS");
58979566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nf, &fld));
58989371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
58999371c9d4SSatish Balay       if (!dm->fields[f].label) fld[nf++] = f;
59009566063dSJacob Faibussowitsch     PetscCall(ISCreate(PETSC_COMM_SELF, &fields));
59019566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_"));
59029566063dSJacob Faibussowitsch     PetscCall(ISSetType(fields, ISGENERAL));
59039566063dSJacob Faibussowitsch     PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER));
590488f0c812SMatthew G. Knepley 
59059566063dSJacob Faibussowitsch     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef));
590607218a29SMatthew G. Knepley     PetscCall(DMSetRegionDS(dm, NULL, fields, dsDef, NULL));
59079566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dsDef));
59089566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&fields));
59092df9ee95SMatthew G. Knepley   }
591007218a29SMatthew G. Knepley   PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL));
59119566063dSJacob Faibussowitsch   if (dsDef) PetscCall(PetscDSSetCoordinateDimension(dsDef, dE));
5912083401c6SMatthew G. Knepley   /* Intersect labels with default fields */
5913083401c6SMatthew G. Knepley   if (Ndef && Nl) {
59140122748bSMatthew G. Knepley     DM              plex;
5915083401c6SMatthew G. Knepley     DMLabel         cellLabel;
5916083401c6SMatthew G. Knepley     IS              fieldIS, allcellIS, defcellIS = NULL;
5917083401c6SMatthew G. Knepley     PetscInt       *fields;
5918083401c6SMatthew G. Knepley     const PetscInt *cells;
5919083401c6SMatthew G. Knepley     PetscInt        depth, nf = 0, n, c;
59200122748bSMatthew G. Knepley 
59219566063dSJacob Faibussowitsch     PetscCall(DMConvert(dm, DMPLEX, &plex));
59229566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepth(plex, &depth));
59239566063dSJacob Faibussowitsch     PetscCall(DMGetStratumIS(plex, "dim", depth, &allcellIS));
59249566063dSJacob Faibussowitsch     if (!allcellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &allcellIS));
59255fedec97SMatthew G. Knepley     /* TODO This looks like it only works for one label */
5926083401c6SMatthew G. Knepley     for (l = 0; l < Nl; ++l) {
5927083401c6SMatthew G. Knepley       DMLabel label = labelSet[l];
5928083401c6SMatthew G. Knepley       IS      pointIS;
5929083401c6SMatthew G. Knepley 
59309566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&defcellIS));
59319566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(label, 1, &pointIS));
59329566063dSJacob Faibussowitsch       PetscCall(ISDifference(allcellIS, pointIS, &defcellIS));
59339566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
5934083401c6SMatthew G. Knepley     }
59359566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&allcellIS));
5936083401c6SMatthew G. Knepley 
59379566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, "defaultCells", &cellLabel));
59389566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(defcellIS, &n));
59399566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(defcellIS, &cells));
59409566063dSJacob Faibussowitsch     for (c = 0; c < n; ++c) PetscCall(DMLabelSetValue(cellLabel, cells[c], 1));
59419566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(defcellIS, &cells));
59429566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&defcellIS));
59439566063dSJacob Faibussowitsch     PetscCall(DMPlexLabelComplete(plex, cellLabel));
5944083401c6SMatthew G. Knepley 
59459566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Ndef, &fields));
59469371c9d4SSatish Balay     for (f = 0; f < Nf; ++f)
59479371c9d4SSatish Balay       if (!dm->fields[f].label) fields[nf++] = f;
59489566063dSJacob Faibussowitsch     PetscCall(ISCreate(PETSC_COMM_SELF, &fieldIS));
59499566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fieldIS, "dm_fields_"));
59509566063dSJacob Faibussowitsch     PetscCall(ISSetType(fieldIS, ISGENERAL));
59519566063dSJacob Faibussowitsch     PetscCall(ISGeneralSetIndices(fieldIS, nf, fields, PETSC_OWN_POINTER));
5952083401c6SMatthew G. Knepley 
59539566063dSJacob Faibussowitsch     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef));
595407218a29SMatthew G. Knepley     PetscCall(DMSetRegionDS(dm, cellLabel, fieldIS, dsDef, NULL));
59559566063dSJacob Faibussowitsch     PetscCall(PetscDSSetCoordinateDimension(dsDef, dE));
59569566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&cellLabel));
59579566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dsDef));
59589566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&fieldIS));
59599566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&plex));
5960083401c6SMatthew G. Knepley   }
5961083401c6SMatthew G. Knepley   /* Create label DSes
5962083401c6SMatthew G. Knepley      - WE ONLY SUPPORT IDENTICAL OR DISJOINT LABELS
5963083401c6SMatthew G. Knepley   */
5964083401c6SMatthew G. Knepley   /* TODO Should check that labels are disjoint */
5965083401c6SMatthew G. Knepley   for (l = 0; l < Nl; ++l) {
5966083401c6SMatthew G. Knepley     DMLabel   label = labelSet[l];
596707218a29SMatthew G. Knepley     PetscDS   ds, dsIn = NULL;
5968083401c6SMatthew G. Knepley     IS        fields;
5969083401c6SMatthew G. Knepley     PetscInt *fld, nf;
5970083401c6SMatthew G. Knepley 
59719566063dSJacob Faibussowitsch     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds));
59729371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
59739371c9d4SSatish Balay       if (label == dm->fields[f].label || !dm->fields[f].label) ++nf;
59749566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nf, &fld));
59759371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
59769371c9d4SSatish Balay       if (label == dm->fields[f].label || !dm->fields[f].label) fld[nf++] = f;
59779566063dSJacob Faibussowitsch     PetscCall(ISCreate(PETSC_COMM_SELF, &fields));
59789566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_"));
59799566063dSJacob Faibussowitsch     PetscCall(ISSetType(fields, ISGENERAL));
59809566063dSJacob Faibussowitsch     PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER));
59819566063dSJacob Faibussowitsch     PetscCall(PetscDSSetCoordinateDimension(ds, dE));
5982083401c6SMatthew G. Knepley     {
5983083401c6SMatthew G. Knepley       DMPolytopeType ct;
5984083401c6SMatthew G. Knepley       PetscInt       lStart, lEnd;
59855fedec97SMatthew G. Knepley       PetscBool      isCohesiveLocal = PETSC_FALSE, isCohesive;
59860122748bSMatthew G. Knepley 
59879566063dSJacob Faibussowitsch       PetscCall(DMLabelGetBounds(label, &lStart, &lEnd));
5988665f567fSMatthew G. Knepley       if (lStart >= 0) {
59899566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCellType(dm, lStart, &ct));
5990412e9a14SMatthew G. Knepley         switch (ct) {
5991412e9a14SMatthew G. Knepley         case DM_POLYTOPE_POINT_PRISM_TENSOR:
5992412e9a14SMatthew G. Knepley         case DM_POLYTOPE_SEG_PRISM_TENSOR:
5993412e9a14SMatthew G. Knepley         case DM_POLYTOPE_TRI_PRISM_TENSOR:
5994d71ae5a4SJacob Faibussowitsch         case DM_POLYTOPE_QUAD_PRISM_TENSOR:
5995d71ae5a4SJacob Faibussowitsch           isCohesiveLocal = PETSC_TRUE;
5996d71ae5a4SJacob Faibussowitsch           break;
5997d71ae5a4SJacob Faibussowitsch         default:
5998d71ae5a4SJacob Faibussowitsch           break;
5999412e9a14SMatthew G. Knepley         }
6000665f567fSMatthew G. Knepley       }
6001462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&isCohesiveLocal, &isCohesive, 1, MPIU_BOOL, MPI_LOR, comm));
600207218a29SMatthew G. Knepley       if (isCohesive) {
600307218a29SMatthew G. Knepley         PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsIn));
600407218a29SMatthew G. Knepley         PetscCall(PetscDSSetCoordinateDimension(dsIn, dE));
600507218a29SMatthew G. Knepley       }
60065fedec97SMatthew G. Knepley       for (f = 0, nf = 0; f < Nf; ++f) {
60075fedec97SMatthew G. Knepley         if (label == dm->fields[f].label || !dm->fields[f].label) {
60085fedec97SMatthew G. Knepley           if (label == dm->fields[f].label) {
60099566063dSJacob Faibussowitsch             PetscCall(PetscDSSetDiscretization(ds, nf, NULL));
60109566063dSJacob Faibussowitsch             PetscCall(PetscDSSetCohesive(ds, nf, isCohesive));
601107218a29SMatthew G. Knepley             if (dsIn) {
601207218a29SMatthew G. Knepley               PetscCall(PetscDSSetDiscretization(dsIn, nf, NULL));
601307218a29SMatthew G. Knepley               PetscCall(PetscDSSetCohesive(dsIn, nf, isCohesive));
601407218a29SMatthew G. Knepley             }
60155fedec97SMatthew G. Knepley           }
60165fedec97SMatthew G. Knepley           ++nf;
60175fedec97SMatthew G. Knepley         }
60185fedec97SMatthew G. Knepley       }
6019e5e52638SMatthew G. Knepley     }
602007218a29SMatthew G. Knepley     PetscCall(DMSetRegionDS(dm, label, fields, ds, dsIn));
602107218a29SMatthew G. Knepley     PetscCall(ISDestroy(&fields));
60229566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&ds));
602307218a29SMatthew G. Knepley     PetscCall(PetscDSDestroy(&dsIn));
6024e5e52638SMatthew G. Knepley   }
60259566063dSJacob Faibussowitsch   PetscCall(PetscFree(labelSet));
6026e5e52638SMatthew G. Knepley   /* Set fields in DSes */
6027083401c6SMatthew G. Knepley   for (s = 0; s < dm->Nds; ++s) {
6028083401c6SMatthew G. Knepley     PetscDS         ds     = dm->probs[s].ds;
602907218a29SMatthew G. Knepley     PetscDS         dsIn   = dm->probs[s].dsIn;
6030083401c6SMatthew G. Knepley     IS              fields = dm->probs[s].fields;
6031083401c6SMatthew G. Knepley     const PetscInt *fld;
60325fedec97SMatthew G. Knepley     PetscInt        nf, dsnf;
60335fedec97SMatthew G. Knepley     PetscBool       isCohesive;
6034e5e52638SMatthew G. Knepley 
60359566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsnf));
60369566063dSJacob Faibussowitsch     PetscCall(PetscDSIsCohesive(ds, &isCohesive));
60379566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(fields, &nf));
60389566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(fields, &fld));
6039083401c6SMatthew G. Knepley     for (f = 0; f < nf; ++f) {
6040083401c6SMatthew G. Knepley       PetscObject  disc = dm->fields[fld[f]].disc;
60415fedec97SMatthew G. Knepley       PetscBool    isCohesiveField;
6042e5e52638SMatthew G. Knepley       PetscClassId id;
6043e5e52638SMatthew G. Knepley 
60445fedec97SMatthew G. Knepley       /* Handle DS with no fields */
60459566063dSJacob Faibussowitsch       if (dsnf) PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField));
60465fedec97SMatthew G. Knepley       /* If this is a cohesive cell, then regular fields need the lower dimensional discretization */
604707218a29SMatthew G. Knepley       if (isCohesive) {
604807218a29SMatthew G. Knepley         if (!isCohesiveField) {
604907218a29SMatthew G. Knepley           PetscObject bdDisc;
605007218a29SMatthew G. Knepley 
605107218a29SMatthew G. Knepley           PetscCall(PetscFEGetHeightSubspace((PetscFE)disc, 1, (PetscFE *)&bdDisc));
605207218a29SMatthew G. Knepley           PetscCall(PetscDSSetDiscretization(ds, f, bdDisc));
605307218a29SMatthew G. Knepley           PetscCall(PetscDSSetDiscretization(dsIn, f, disc));
605407218a29SMatthew G. Knepley         } else {
60559566063dSJacob Faibussowitsch           PetscCall(PetscDSSetDiscretization(ds, f, disc));
605607218a29SMatthew G. Knepley           PetscCall(PetscDSSetDiscretization(dsIn, f, disc));
605707218a29SMatthew G. Knepley         }
605807218a29SMatthew G. Knepley       } else {
605907218a29SMatthew G. Knepley         PetscCall(PetscDSSetDiscretization(ds, f, disc));
606007218a29SMatthew G. Knepley       }
6061083401c6SMatthew G. Knepley       /* We allow people to have placeholder fields and construct the Section by hand */
60629566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(disc, &id));
6063e5e52638SMatthew G. Knepley       if ((id != PETSCFE_CLASSID) && (id != PETSCFV_CLASSID)) doSetup = PETSC_FALSE;
6064e5e52638SMatthew G. Knepley     }
60659566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(fields, &fld));
6066e5e52638SMatthew G. Knepley   }
6067f9244615SMatthew G. Knepley   /* Allow k-jet tabulation */
60689566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)dm)->prefix, "-dm_ds_jet_degree", &k, &flg));
6069f9244615SMatthew G. Knepley   if (flg) {
60703b4aee56SMatthew G. Knepley     for (s = 0; s < dm->Nds; ++s) {
60713b4aee56SMatthew G. Knepley       PetscDS  ds   = dm->probs[s].ds;
607207218a29SMatthew G. Knepley       PetscDS  dsIn = dm->probs[s].dsIn;
60733b4aee56SMatthew G. Knepley       PetscInt Nf, f;
60743b4aee56SMatthew G. Knepley 
60759566063dSJacob Faibussowitsch       PetscCall(PetscDSGetNumFields(ds, &Nf));
607607218a29SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
607707218a29SMatthew G. Knepley         PetscCall(PetscDSSetJetDegree(ds, f, k));
607807218a29SMatthew G. Knepley         if (dsIn) PetscCall(PetscDSSetJetDegree(dsIn, f, k));
607907218a29SMatthew G. Knepley       }
60803b4aee56SMatthew G. Knepley     }
6081f9244615SMatthew G. Knepley   }
6082e5e52638SMatthew G. Knepley   /* Setup DSes */
6083e5e52638SMatthew G. Knepley   if (doSetup) {
608407218a29SMatthew G. Knepley     for (s = 0; s < dm->Nds; ++s) {
6085cf1363e4SMatthew G. Knepley       if (dm->setfromoptionscalled) {
6086cf1363e4SMatthew G. Knepley         PetscCall(PetscDSSetFromOptions(dm->probs[s].ds));
6087cf1363e4SMatthew G. Knepley         if (dm->probs[s].dsIn) PetscCall(PetscDSSetFromOptions(dm->probs[s].dsIn));
6088cf1363e4SMatthew G. Knepley       }
608907218a29SMatthew G. Knepley       PetscCall(PetscDSSetUp(dm->probs[s].ds));
609007218a29SMatthew G. Knepley       if (dm->probs[s].dsIn) PetscCall(PetscDSSetUp(dm->probs[s].dsIn));
609107218a29SMatthew G. Knepley     }
6092e5e52638SMatthew G. Knepley   }
60933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6094e5e52638SMatthew G. Knepley }
6095e5e52638SMatthew G. Knepley 
6096e5e52638SMatthew G. Knepley /*@
6097d2b2dc1eSMatthew G. Knepley   DMUseTensorOrder - Use a tensor product closure ordering for the default section
6098d2b2dc1eSMatthew G. Knepley 
6099d2b2dc1eSMatthew G. Knepley   Input Parameters:
6100d2b2dc1eSMatthew G. Knepley + dm     - The DM
6101d2b2dc1eSMatthew G. Knepley - tensor - Flag for tensor order
6102d2b2dc1eSMatthew G. Knepley 
6103d2b2dc1eSMatthew G. Knepley   Level: developer
6104d2b2dc1eSMatthew G. Knepley 
6105d2b2dc1eSMatthew G. Knepley .seealso: `DMPlexSetClosurePermutationTensor()`, `PetscSectionResetClosurePermutation()`
6106d2b2dc1eSMatthew G. Knepley @*/
6107d2b2dc1eSMatthew G. Knepley PetscErrorCode DMUseTensorOrder(DM dm, PetscBool tensor)
6108d2b2dc1eSMatthew G. Knepley {
6109d2b2dc1eSMatthew G. Knepley   PetscInt  Nf;
6110d2b2dc1eSMatthew G. Knepley   PetscBool reorder = PETSC_TRUE, isPlex;
6111d2b2dc1eSMatthew G. Knepley 
6112d2b2dc1eSMatthew G. Knepley   PetscFunctionBegin;
6113d2b2dc1eSMatthew G. Knepley   PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex));
6114d2b2dc1eSMatthew G. Knepley   PetscCall(DMGetNumFields(dm, &Nf));
6115d2b2dc1eSMatthew G. Knepley   for (PetscInt f = 0; f < Nf; ++f) {
6116d2b2dc1eSMatthew G. Knepley     PetscObject  obj;
6117d2b2dc1eSMatthew G. Knepley     PetscClassId id;
6118d2b2dc1eSMatthew G. Knepley 
6119d2b2dc1eSMatthew G. Knepley     PetscCall(DMGetField(dm, f, NULL, &obj));
6120d2b2dc1eSMatthew G. Knepley     PetscCall(PetscObjectGetClassId(obj, &id));
6121d2b2dc1eSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
6122d2b2dc1eSMatthew G. Knepley       PetscSpace sp;
6123d2b2dc1eSMatthew G. Knepley       PetscBool  tensor;
6124d2b2dc1eSMatthew G. Knepley 
6125d2b2dc1eSMatthew G. Knepley       PetscCall(PetscFEGetBasisSpace((PetscFE)obj, &sp));
6126d2b2dc1eSMatthew G. Knepley       PetscCall(PetscSpacePolynomialGetTensor(sp, &tensor));
6127d2b2dc1eSMatthew G. Knepley       reorder = reorder && tensor ? PETSC_TRUE : PETSC_FALSE;
6128d2b2dc1eSMatthew G. Knepley     } else reorder = PETSC_FALSE;
6129d2b2dc1eSMatthew G. Knepley   }
6130d2b2dc1eSMatthew G. Knepley   if (tensor) {
6131d2b2dc1eSMatthew G. Knepley     if (reorder && isPlex) PetscCall(DMPlexSetClosurePermutationTensor(dm, PETSC_DETERMINE, NULL));
6132d2b2dc1eSMatthew G. Knepley   } else {
6133d2b2dc1eSMatthew G. Knepley     PetscSection s;
6134d2b2dc1eSMatthew G. Knepley 
6135d2b2dc1eSMatthew G. Knepley     PetscCall(DMGetLocalSection(dm, &s));
6136d2b2dc1eSMatthew G. Knepley     if (s) PetscCall(PetscSectionResetClosurePermutation(s));
6137d2b2dc1eSMatthew G. Knepley   }
6138d2b2dc1eSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
6139d2b2dc1eSMatthew G. Knepley }
6140d2b2dc1eSMatthew G. Knepley 
6141d2b2dc1eSMatthew G. Knepley /*@
6142bb7acecfSBarry Smith   DMComputeExactSolution - Compute the exact solution for a given `DM`, using the `PetscDS` information.
61437f96f943SMatthew G. Knepley 
614420f4b53cSBarry Smith   Collective
6145f2cacb80SMatthew G. Knepley 
61467f96f943SMatthew G. Knepley   Input Parameters:
6147bb7acecfSBarry Smith + dm   - The `DM`
61487f96f943SMatthew G. Knepley - time - The time
61497f96f943SMatthew G. Knepley 
61507f96f943SMatthew G. Knepley   Output Parameters:
615120f4b53cSBarry Smith + u   - The vector will be filled with exact solution values, or `NULL`
615220f4b53cSBarry Smith - u_t - The vector will be filled with the time derivative of exact solution values, or `NULL`
615320f4b53cSBarry Smith 
615420f4b53cSBarry Smith   Level: developer
61557f96f943SMatthew G. Knepley 
6156bb7acecfSBarry Smith   Note:
6157bb7acecfSBarry Smith   The user must call `PetscDSSetExactSolution()` before using this routine
61587f96f943SMatthew G. Knepley 
61591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscDSSetExactSolution()`
61607f96f943SMatthew G. Knepley @*/
6161d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeExactSolution(DM dm, PetscReal time, Vec u, Vec u_t)
6162d71ae5a4SJacob Faibussowitsch {
61637f96f943SMatthew G. Knepley   PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx);
61647f96f943SMatthew G. Knepley   void   **ectxs;
6165f60fa741SMatthew G. Knepley   Vec      locu, locu_t;
61667f96f943SMatthew G. Knepley   PetscInt Nf, Nds, s;
61677f96f943SMatthew G. Knepley 
61687f96f943SMatthew G. Knepley   PetscFunctionBegin;
6169f2cacb80SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6170f60fa741SMatthew G. Knepley   if (u) {
6171f60fa741SMatthew G. Knepley     PetscValidHeaderSpecific(u, VEC_CLASSID, 3);
6172f60fa741SMatthew G. Knepley     PetscCall(DMGetLocalVector(dm, &locu));
6173f60fa741SMatthew G. Knepley     PetscCall(VecSet(locu, 0.));
6174f60fa741SMatthew G. Knepley   }
6175f60fa741SMatthew G. Knepley   if (u_t) {
6176f60fa741SMatthew G. Knepley     PetscValidHeaderSpecific(u_t, VEC_CLASSID, 4);
6177f60fa741SMatthew G. Knepley     PetscCall(DMGetLocalVector(dm, &locu_t));
6178f60fa741SMatthew G. Knepley     PetscCall(VecSet(locu_t, 0.));
6179f60fa741SMatthew G. Knepley   }
61809566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
61819566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(Nf, &exacts, Nf, &ectxs));
61829566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
61837f96f943SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
61847f96f943SMatthew G. Knepley     PetscDS         ds;
61857f96f943SMatthew G. Knepley     DMLabel         label;
61867f96f943SMatthew G. Knepley     IS              fieldIS;
61877f96f943SMatthew G. Knepley     const PetscInt *fields, id = 1;
61887f96f943SMatthew G. Knepley     PetscInt        dsNf, f;
61897f96f943SMatthew G. Knepley 
619007218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL));
61919566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsNf));
61929566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(fieldIS, &fields));
61939566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(exacts, Nf));
61949566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ectxs, Nf));
6195f2cacb80SMatthew G. Knepley     if (u) {
6196f60fa741SMatthew G. Knepley       for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolution(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]]));
6197f60fa741SMatthew G. Knepley       if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu));
6198f60fa741SMatthew G. Knepley       else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu));
61997f96f943SMatthew G. Knepley     }
6200f2cacb80SMatthew G. Knepley     if (u_t) {
62019566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(exacts, Nf));
62029566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(ectxs, Nf));
6203f60fa741SMatthew G. Knepley       for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolutionTimeDerivative(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]]));
6204f60fa741SMatthew G. Knepley       if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu_t));
6205f60fa741SMatthew G. Knepley       else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu_t));
6206f2cacb80SMatthew G. Knepley     }
62079566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(fieldIS, &fields));
6208f2cacb80SMatthew G. Knepley   }
6209f2cacb80SMatthew G. Knepley   if (u) {
62109566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution"));
62119566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u, "exact_"));
6212f2cacb80SMatthew G. Knepley   }
6213f2cacb80SMatthew G. Knepley   if (u_t) {
62149566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution Time Derivative"));
62159566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u_t, "exact_t_"));
6216f2cacb80SMatthew G. Knepley   }
62179566063dSJacob Faibussowitsch   PetscCall(PetscFree2(exacts, ectxs));
6218f60fa741SMatthew G. Knepley   if (u) {
6219f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalBegin(dm, locu, INSERT_ALL_VALUES, u));
6220f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalEnd(dm, locu, INSERT_ALL_VALUES, u));
6221f60fa741SMatthew G. Knepley     PetscCall(DMRestoreLocalVector(dm, &locu));
6222f60fa741SMatthew G. Knepley   }
6223f60fa741SMatthew G. Knepley   if (u_t) {
6224f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalBegin(dm, locu_t, INSERT_ALL_VALUES, u_t));
6225f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalEnd(dm, locu_t, INSERT_ALL_VALUES, u_t));
6226f60fa741SMatthew G. Knepley     PetscCall(DMRestoreLocalVector(dm, &locu_t));
6227f60fa741SMatthew G. Knepley   }
62283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
62297f96f943SMatthew G. Knepley }
62307f96f943SMatthew G. Knepley 
6231bb4b53efSMatthew G. Knepley static PetscErrorCode DMTransferDS_Internal(DM dm, DMLabel label, IS fields, PetscInt minDegree, PetscInt maxDegree, PetscDS ds, PetscDS dsIn)
6232d71ae5a4SJacob Faibussowitsch {
623307218a29SMatthew G. Knepley   PetscDS dsNew, dsInNew = NULL;
623445480ffeSMatthew G. Knepley 
623545480ffeSMatthew G. Knepley   PetscFunctionBegin;
62369566063dSJacob Faibussowitsch   PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)ds), &dsNew));
6237bb4b53efSMatthew G. Knepley   PetscCall(PetscDSCopy(ds, minDegree, maxDegree, dm, dsNew));
623807218a29SMatthew G. Knepley   if (dsIn) {
623907218a29SMatthew G. Knepley     PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)dsIn), &dsInNew));
6240bb4b53efSMatthew G. Knepley     PetscCall(PetscDSCopy(dsIn, minDegree, maxDegree, dm, dsInNew));
624145480ffeSMatthew G. Knepley   }
624207218a29SMatthew G. Knepley   PetscCall(DMSetRegionDS(dm, label, fields, dsNew, dsInNew));
62439566063dSJacob Faibussowitsch   PetscCall(PetscDSDestroy(&dsNew));
624407218a29SMatthew G. Knepley   PetscCall(PetscDSDestroy(&dsInNew));
62453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
624645480ffeSMatthew G. Knepley }
624745480ffeSMatthew G. Knepley 
62487f96f943SMatthew G. Knepley /*@
6249bb7acecfSBarry Smith   DMCopyDS - Copy the discrete systems for the `DM` into another `DM`
6250e5e52638SMatthew G. Knepley 
625120f4b53cSBarry Smith   Collective
6252e5e52638SMatthew G. Knepley 
6253bb4b53efSMatthew G. Knepley   Input Parameters:
6254bb4b53efSMatthew G. Knepley + dm        - The `DM`
6255bb4b53efSMatthew G. Knepley . minDegree - Minimum degree for a discretization, or `PETSC_DETERMINE` for no limit
6256bb4b53efSMatthew G. Knepley - maxDegree - Maximum degree for a discretization, or `PETSC_DETERMINE` for no limit
6257e5e52638SMatthew G. Knepley 
6258e5e52638SMatthew G. Knepley   Output Parameter:
6259bb7acecfSBarry Smith . newdm - The `DM`
6260e5e52638SMatthew G. Knepley 
6261e5e52638SMatthew G. Knepley   Level: advanced
6262e5e52638SMatthew G. Knepley 
62631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`
6264e5e52638SMatthew G. Knepley @*/
6265bb4b53efSMatthew G. Knepley PetscErrorCode DMCopyDS(DM dm, PetscInt minDegree, PetscInt maxDegree, DM newdm)
6266d71ae5a4SJacob Faibussowitsch {
6267e5e52638SMatthew G. Knepley   PetscInt Nds, s;
6268e5e52638SMatthew G. Knepley 
6269e5e52638SMatthew G. Knepley   PetscFunctionBegin;
62703ba16761SJacob Faibussowitsch   if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS);
62719566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
62729566063dSJacob Faibussowitsch   PetscCall(DMClearDS(newdm));
6273e5e52638SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
6274e5e52638SMatthew G. Knepley     DMLabel  label;
6275b3cf3223SMatthew G. Knepley     IS       fields;
627607218a29SMatthew G. Knepley     PetscDS  ds, dsIn, newds;
6277783e2ec8SMatthew G. Knepley     PetscInt Nbd, bd;
6278e5e52638SMatthew G. Knepley 
627907218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fields, &ds, &dsIn));
6280b8025e53SMatthew G. Knepley     /* TODO: We need to change all keys from labels in the old DM to labels in the new DM */
6281bb4b53efSMatthew G. Knepley     PetscCall(DMTransferDS_Internal(newdm, label, fields, minDegree, maxDegree, ds, dsIn));
6282d5b43468SJose E. Roman     /* Complete new labels in the new DS */
628307218a29SMatthew G. Knepley     PetscCall(DMGetRegionDS(newdm, label, NULL, &newds, NULL));
62849566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumBoundary(newds, &Nbd));
6285783e2ec8SMatthew G. Knepley     for (bd = 0; bd < Nbd; ++bd) {
6286b8025e53SMatthew G. Knepley       PetscWeakForm wf;
628745480ffeSMatthew G. Knepley       DMLabel       label;
6288783e2ec8SMatthew G. Knepley       PetscInt      field;
6289783e2ec8SMatthew G. Knepley 
62909566063dSJacob Faibussowitsch       PetscCall(PetscDSGetBoundary(newds, bd, &wf, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL));
62919566063dSJacob Faibussowitsch       PetscCall(PetscWeakFormReplaceLabel(wf, label));
6292783e2ec8SMatthew G. Knepley     }
6293e5e52638SMatthew G. Knepley   }
6294799db056SMatthew G. Knepley   PetscCall(DMCompleteBCLabels_Internal(newdm));
62953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6296e5e52638SMatthew G. Knepley }
6297e5e52638SMatthew G. Knepley 
6298e5e52638SMatthew G. Knepley /*@
6299bb7acecfSBarry Smith   DMCopyDisc - Copy the fields and discrete systems for the `DM` into another `DM`
6300e5e52638SMatthew G. Knepley 
630120f4b53cSBarry Smith   Collective
6302e5e52638SMatthew G. Knepley 
6303e5e52638SMatthew G. Knepley   Input Parameter:
6304bb7acecfSBarry Smith . dm - The `DM`
6305e5e52638SMatthew G. Knepley 
6306e5e52638SMatthew G. Knepley   Output Parameter:
6307bb7acecfSBarry Smith . newdm - The `DM`
6308e5e52638SMatthew G. Knepley 
6309e5e52638SMatthew G. Knepley   Level: advanced
6310e5e52638SMatthew G. Knepley 
631173ff1848SBarry Smith   Developer Note:
6312bb7acecfSBarry Smith   Really ugly name, nothing in PETSc is called a `Disc` plus it is an ugly abbreviation
6313bb7acecfSBarry Smith 
63141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMCopyDS()`
6315e5e52638SMatthew G. Knepley @*/
6316d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDisc(DM dm, DM newdm)
6317d71ae5a4SJacob Faibussowitsch {
6318e5e52638SMatthew G. Knepley   PetscFunctionBegin;
6319bb4b53efSMatthew G. Knepley   PetscCall(DMCopyFields(dm, PETSC_DETERMINE, PETSC_DETERMINE, newdm));
6320bb4b53efSMatthew G. Knepley   PetscCall(DMCopyDS(dm, PETSC_DETERMINE, PETSC_DETERMINE, newdm));
63213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6322e5e52638SMatthew G. Knepley }
6323e5e52638SMatthew G. Knepley 
6324c73cfb54SMatthew G. Knepley /*@
6325bb7acecfSBarry Smith   DMGetDimension - Return the topological dimension of the `DM`
6326c73cfb54SMatthew G. Knepley 
632720f4b53cSBarry Smith   Not Collective
6328c73cfb54SMatthew G. Knepley 
6329c73cfb54SMatthew G. Knepley   Input Parameter:
6330bb7acecfSBarry Smith . dm - The `DM`
6331c73cfb54SMatthew G. Knepley 
6332c73cfb54SMatthew G. Knepley   Output Parameter:
6333c73cfb54SMatthew G. Knepley . dim - The topological dimension
6334c73cfb54SMatthew G. Knepley 
6335c73cfb54SMatthew G. Knepley   Level: beginner
6336c73cfb54SMatthew G. Knepley 
63371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDimension()`, `DMCreate()`
6338c73cfb54SMatthew G. Knepley @*/
6339d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimension(DM dm, PetscInt *dim)
6340d71ae5a4SJacob Faibussowitsch {
6341c73cfb54SMatthew G. Knepley   PetscFunctionBegin;
6342c73cfb54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
63434f572ea9SToby Isaac   PetscAssertPointer(dim, 2);
6344c73cfb54SMatthew G. Knepley   *dim = dm->dim;
63453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6346c73cfb54SMatthew G. Knepley }
6347c73cfb54SMatthew G. Knepley 
6348c73cfb54SMatthew G. Knepley /*@
6349bb7acecfSBarry Smith   DMSetDimension - Set the topological dimension of the `DM`
6350c73cfb54SMatthew G. Knepley 
635120f4b53cSBarry Smith   Collective
6352c73cfb54SMatthew G. Knepley 
6353c73cfb54SMatthew G. Knepley   Input Parameters:
6354bb7acecfSBarry Smith + dm  - The `DM`
6355c73cfb54SMatthew G. Knepley - dim - The topological dimension
6356c73cfb54SMatthew G. Knepley 
6357c73cfb54SMatthew G. Knepley   Level: beginner
6358c73cfb54SMatthew G. Knepley 
63591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDimension()`, `DMCreate()`
6360c73cfb54SMatthew G. Knepley @*/
6361d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDimension(DM dm, PetscInt dim)
6362d71ae5a4SJacob Faibussowitsch {
6363e5e52638SMatthew G. Knepley   PetscDS  ds;
636445480ffeSMatthew G. Knepley   PetscInt Nds, n;
6365f17e8794SMatthew G. Knepley 
6366c73cfb54SMatthew G. Knepley   PetscFunctionBegin;
6367c73cfb54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6368c73cfb54SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, dim, 2);
6369c73cfb54SMatthew G. Knepley   dm->dim = dim;
6370d17bd122SMatthew G. Knepley   if (dm->dim >= 0) {
63719566063dSJacob Faibussowitsch     PetscCall(DMGetNumDS(dm, &Nds));
637245480ffeSMatthew G. Knepley     for (n = 0; n < Nds; ++n) {
637307218a29SMatthew G. Knepley       PetscCall(DMGetRegionNumDS(dm, n, NULL, NULL, &ds, NULL));
63749566063dSJacob Faibussowitsch       if (ds->dimEmbed < 0) PetscCall(PetscDSSetCoordinateDimension(ds, dim));
637545480ffeSMatthew G. Knepley     }
6376d17bd122SMatthew G. Knepley   }
63773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6378c73cfb54SMatthew G. Knepley }
6379c73cfb54SMatthew G. Knepley 
6380793f3fe5SMatthew G. Knepley /*@
6381793f3fe5SMatthew G. Knepley   DMGetDimPoints - Get the half-open interval for all points of a given dimension
6382793f3fe5SMatthew G. Knepley 
638320f4b53cSBarry Smith   Collective
6384793f3fe5SMatthew G. Knepley 
6385793f3fe5SMatthew G. Knepley   Input Parameters:
6386bb7acecfSBarry Smith + dm  - the `DM`
6387793f3fe5SMatthew G. Knepley - dim - the dimension
6388793f3fe5SMatthew G. Knepley 
6389793f3fe5SMatthew G. Knepley   Output Parameters:
6390793f3fe5SMatthew G. Knepley + pStart - The first point of the given dimension
6391aa049354SPatrick Sanan - pEnd   - The first point following points of the given dimension
6392793f3fe5SMatthew G. Knepley 
639320f4b53cSBarry Smith   Level: intermediate
639420f4b53cSBarry Smith 
6395793f3fe5SMatthew G. Knepley   Note:
6396793f3fe5SMatthew G. Knepley   The points are vertices in the Hasse diagram encoding the topology. This is explained in
6397a8d69d7bSBarry Smith   https://arxiv.org/abs/0908.4427. If no points exist of this dimension in the storage scheme,
6398793f3fe5SMatthew G. Knepley   then the interval is empty.
6399793f3fe5SMatthew G. Knepley 
64001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPLEX`, `DMPlexGetDepthStratum()`, `DMPlexGetHeightStratum()`
6401793f3fe5SMatthew G. Knepley @*/
6402d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimPoints(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd)
6403d71ae5a4SJacob Faibussowitsch {
6404793f3fe5SMatthew G. Knepley   PetscInt d;
6405793f3fe5SMatthew G. Knepley 
6406793f3fe5SMatthew G. Knepley   PetscFunctionBegin;
6407793f3fe5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
64089566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &d));
64097a8be351SBarry Smith   PetscCheck((dim >= 0) && (dim <= d), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %" PetscInt_FMT, dim);
6410dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, getdimpoints, dim, pStart, pEnd);
64113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6412793f3fe5SMatthew G. Knepley }
6413793f3fe5SMatthew G. Knepley 
64146636e97aSMatthew G Knepley /*@
6415bb7acecfSBarry Smith   DMGetOutputDM - Retrieve the `DM` associated with the layout for output
6416f4d763aaSMatthew G. Knepley 
641720f4b53cSBarry Smith   Collective
64188f700142SStefano Zampini 
6419f4d763aaSMatthew G. Knepley   Input Parameter:
6420bb7acecfSBarry Smith . dm - The original `DM`
6421f4d763aaSMatthew G. Knepley 
6422f4d763aaSMatthew G. Knepley   Output Parameter:
6423bb7acecfSBarry Smith . odm - The `DM` which provides the layout for output
6424f4d763aaSMatthew G. Knepley 
6425f4d763aaSMatthew G. Knepley   Level: intermediate
6426f4d763aaSMatthew G. Knepley 
6427bb7acecfSBarry Smith   Note:
6428bb7acecfSBarry Smith   In some situations the vector obtained with `DMCreateGlobalVector()` excludes points for degrees of freedom that are associated with fixed (Dirichelet) boundary
6429bb7acecfSBarry Smith   conditions since the algebraic solver does not solve for those variables. The output `DM` includes these excluded points and its global vector contains the
6430bb7acecfSBarry Smith   locations for those dof so that they can be output to a file or other viewer along with the unconstrained dof.
6431bb7acecfSBarry Smith 
64321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`, `DMGetGlobalSection()`, `DMCreateGlobalVector()`, `PetscSectionHasConstraints()`, `DMSetGlobalSection()`
6433f4d763aaSMatthew G. Knepley @*/
6434d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputDM(DM dm, DM *odm)
6435d71ae5a4SJacob Faibussowitsch {
6436c26acbdeSMatthew G. Knepley   PetscSection section;
6437eb9d3e4dSMatthew G. Knepley   IS           perm;
6438eb9d3e4dSMatthew G. Knepley   PetscBool    hasConstraints, newDM, gnewDM;
643992a26154SJames Wright   PetscInt     num_face_sfs = 0;
644014f150ffSMatthew G. Knepley 
644114f150ffSMatthew G. Knepley   PetscFunctionBegin;
644214f150ffSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
64434f572ea9SToby Isaac   PetscAssertPointer(odm, 2);
64449566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
64459566063dSJacob Faibussowitsch   PetscCall(PetscSectionHasConstraints(section, &hasConstraints));
6446eb9d3e4dSMatthew G. Knepley   PetscCall(PetscSectionGetPermutation(section, &perm));
644792a26154SJames Wright   PetscCall(DMPlexGetIsoperiodicFaceSF(dm, &num_face_sfs, NULL));
644892a26154SJames Wright   newDM = hasConstraints || perm || (num_face_sfs > 0) ? PETSC_TRUE : PETSC_FALSE;
6449462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&newDM, &gnewDM, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm)));
6450eb9d3e4dSMatthew G. Knepley   if (!gnewDM) {
6451c26acbdeSMatthew G. Knepley     *odm = dm;
64523ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
6453c26acbdeSMatthew G. Knepley   }
645414f150ffSMatthew G. Knepley   if (!dm->dmBC) {
6455c26acbdeSMatthew G. Knepley     PetscSection newSection, gsection;
645692a26154SJames Wright     PetscSF      sf, sfNatural;
6457eb9d3e4dSMatthew G. Knepley     PetscBool    usePerm = dm->ignorePermOutput ? PETSC_FALSE : PETSC_TRUE;
645814f150ffSMatthew G. Knepley 
64599566063dSJacob Faibussowitsch     PetscCall(DMClone(dm, &dm->dmBC));
64609566063dSJacob Faibussowitsch     PetscCall(DMCopyDisc(dm, dm->dmBC));
64619566063dSJacob Faibussowitsch     PetscCall(PetscSectionClone(section, &newSection));
64629566063dSJacob Faibussowitsch     PetscCall(DMSetLocalSection(dm->dmBC, newSection));
64639566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&newSection));
646492a26154SJames Wright     PetscCall(DMGetNaturalSF(dm, &sfNatural));
646592a26154SJames Wright     PetscCall(DMSetNaturalSF(dm->dmBC, sfNatural));
64669566063dSJacob Faibussowitsch     PetscCall(DMGetPointSF(dm->dmBC, &sf));
6467eb9d3e4dSMatthew G. Knepley     PetscCall(PetscSectionCreateGlobalSection(section, sf, usePerm, PETSC_TRUE, PETSC_FALSE, &gsection));
64689566063dSJacob Faibussowitsch     PetscCall(DMSetGlobalSection(dm->dmBC, gsection));
64699566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&gsection));
647014f150ffSMatthew G. Knepley   }
647114f150ffSMatthew G. Knepley   *odm = dm->dmBC;
64723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
647314f150ffSMatthew G. Knepley }
6474f4d763aaSMatthew G. Knepley 
6475f4d763aaSMatthew G. Knepley /*@
6476cdb7a50dSMatthew G. Knepley   DMGetOutputSequenceNumber - Retrieve the sequence number/value for output
6477f4d763aaSMatthew G. Knepley 
6478f4d763aaSMatthew G. Knepley   Input Parameter:
6479bb7acecfSBarry Smith . dm - The original `DM`
6480f4d763aaSMatthew G. Knepley 
6481cdb7a50dSMatthew G. Knepley   Output Parameters:
6482cdb7a50dSMatthew G. Knepley + num - The output sequence number
6483cdb7a50dSMatthew G. Knepley - val - The output sequence value
6484f4d763aaSMatthew G. Knepley 
6485f4d763aaSMatthew G. Knepley   Level: intermediate
6486f4d763aaSMatthew G. Knepley 
6487bb7acecfSBarry Smith   Note:
6488bb7acecfSBarry Smith   This is intended for output that should appear in sequence, for instance
6489bb7acecfSBarry Smith   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6490bb7acecfSBarry Smith 
649173ff1848SBarry Smith   Developer Note:
6492bb7acecfSBarry Smith   The `DM` serves as a convenient place to store the current iteration value. The iteration is not
6493bb7acecfSBarry Smith   not directly related to the `DM`.
6494f4d763aaSMatthew G. Knepley 
64951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`
6496f4d763aaSMatthew G. Knepley @*/
6497d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputSequenceNumber(DM dm, PetscInt *num, PetscReal *val)
6498d71ae5a4SJacob Faibussowitsch {
6499f4d763aaSMatthew G. Knepley   PetscFunctionBegin;
6500f4d763aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
65019371c9d4SSatish Balay   if (num) {
65024f572ea9SToby Isaac     PetscAssertPointer(num, 2);
65039371c9d4SSatish Balay     *num = dm->outputSequenceNum;
65049371c9d4SSatish Balay   }
65059371c9d4SSatish Balay   if (val) {
65064f572ea9SToby Isaac     PetscAssertPointer(val, 3);
65079371c9d4SSatish Balay     *val = dm->outputSequenceVal;
65089371c9d4SSatish Balay   }
65093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6510f4d763aaSMatthew G. Knepley }
6511f4d763aaSMatthew G. Knepley 
6512f4d763aaSMatthew G. Knepley /*@
6513cdb7a50dSMatthew G. Knepley   DMSetOutputSequenceNumber - Set the sequence number/value for output
6514f4d763aaSMatthew G. Knepley 
6515f4d763aaSMatthew G. Knepley   Input Parameters:
6516bb7acecfSBarry Smith + dm  - The original `DM`
6517cdb7a50dSMatthew G. Knepley . num - The output sequence number
6518cdb7a50dSMatthew G. Knepley - val - The output sequence value
6519f4d763aaSMatthew G. Knepley 
6520f4d763aaSMatthew G. Knepley   Level: intermediate
6521f4d763aaSMatthew G. Knepley 
6522bb7acecfSBarry Smith   Note:
6523bb7acecfSBarry Smith   This is intended for output that should appear in sequence, for instance
6524bb7acecfSBarry Smith   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6525f4d763aaSMatthew G. Knepley 
65261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`
6527f4d763aaSMatthew G. Knepley @*/
6528d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOutputSequenceNumber(DM dm, PetscInt num, PetscReal val)
6529d71ae5a4SJacob Faibussowitsch {
6530f4d763aaSMatthew G. Knepley   PetscFunctionBegin;
6531f4d763aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6532f4d763aaSMatthew G. Knepley   dm->outputSequenceNum = num;
6533cdb7a50dSMatthew G. Knepley   dm->outputSequenceVal = val;
65343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6535cdb7a50dSMatthew G. Knepley }
6536cdb7a50dSMatthew G. Knepley 
65375d83a8b1SBarry Smith /*@
6538bb7acecfSBarry Smith   DMOutputSequenceLoad - Retrieve the sequence value from a `PetscViewer`
6539cdb7a50dSMatthew G. Knepley 
6540cdb7a50dSMatthew G. Knepley   Input Parameters:
6541bb7acecfSBarry Smith + dm     - The original `DM`
6542b2033f5dSMatthew G. Knepley . viewer - The `PetscViewer` to get it from
6543cdb7a50dSMatthew G. Knepley . name   - The sequence name
6544cdb7a50dSMatthew G. Knepley - num    - The output sequence number
6545cdb7a50dSMatthew G. Knepley 
6546cdb7a50dSMatthew G. Knepley   Output Parameter:
6547cdb7a50dSMatthew G. Knepley . val - The output sequence value
6548cdb7a50dSMatthew G. Knepley 
6549cdb7a50dSMatthew G. Knepley   Level: intermediate
6550cdb7a50dSMatthew G. Knepley 
6551bb7acecfSBarry Smith   Note:
6552bb7acecfSBarry Smith   This is intended for output that should appear in sequence, for instance
6553bb7acecfSBarry Smith   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6554bb7acecfSBarry Smith 
655573ff1848SBarry Smith   Developer Note:
6556bb7acecfSBarry Smith   It is unclear at the user API level why a `DM` is needed as input
6557cdb7a50dSMatthew G. Knepley 
65581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()`
6559cdb7a50dSMatthew G. Knepley @*/
6560b2033f5dSMatthew G. Knepley PetscErrorCode DMOutputSequenceLoad(DM dm, PetscViewer viewer, const char name[], PetscInt num, PetscReal *val)
6561d71ae5a4SJacob Faibussowitsch {
6562cdb7a50dSMatthew G. Knepley   PetscBool ishdf5;
6563cdb7a50dSMatthew G. Knepley 
6564cdb7a50dSMatthew G. Knepley   PetscFunctionBegin;
6565cdb7a50dSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6566cdb7a50dSMatthew G. Knepley   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
6567b2033f5dSMatthew G. Knepley   PetscAssertPointer(name, 3);
65684f572ea9SToby Isaac   PetscAssertPointer(val, 5);
65699566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
6570cdb7a50dSMatthew G. Knepley   if (ishdf5) {
6571cdb7a50dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5)
6572cdb7a50dSMatthew G. Knepley     PetscScalar value;
6573cdb7a50dSMatthew G. Knepley 
65749566063dSJacob Faibussowitsch     PetscCall(DMSequenceLoad_HDF5_Internal(dm, name, num, &value, viewer));
65754aeb217fSMatthew G. Knepley     *val = PetscRealPart(value);
6576cdb7a50dSMatthew G. Knepley #endif
6577cdb7a50dSMatthew G. Knepley   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()");
65783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6579f4d763aaSMatthew G. Knepley }
65808e4ac7eaSMatthew G. Knepley 
65818e4ac7eaSMatthew G. Knepley /*@
6582b2033f5dSMatthew G. Knepley   DMGetOutputSequenceLength - Retrieve the number of sequence values from a `PetscViewer`
6583b2033f5dSMatthew G. Knepley 
6584b2033f5dSMatthew G. Knepley   Input Parameters:
6585b2033f5dSMatthew G. Knepley + dm     - The original `DM`
6586b2033f5dSMatthew G. Knepley . viewer - The `PetscViewer` to get it from
6587b2033f5dSMatthew G. Knepley - name   - The sequence name
6588b2033f5dSMatthew G. Knepley 
6589b2033f5dSMatthew G. Knepley   Output Parameter:
6590b2033f5dSMatthew G. Knepley . len - The length of the output sequence
6591b2033f5dSMatthew G. Knepley 
6592b2033f5dSMatthew G. Knepley   Level: intermediate
6593b2033f5dSMatthew G. Knepley 
6594b2033f5dSMatthew G. Knepley   Note:
6595b2033f5dSMatthew G. Knepley   This is intended for output that should appear in sequence, for instance
6596b2033f5dSMatthew G. Knepley   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6597b2033f5dSMatthew G. Knepley 
6598b2033f5dSMatthew G. Knepley   Developer Note:
6599b2033f5dSMatthew G. Knepley   It is unclear at the user API level why a `DM` is needed as input
6600b2033f5dSMatthew G. Knepley 
6601b2033f5dSMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()`
6602b2033f5dSMatthew G. Knepley @*/
6603b2033f5dSMatthew G. Knepley PetscErrorCode DMGetOutputSequenceLength(DM dm, PetscViewer viewer, const char name[], PetscInt *len)
6604b2033f5dSMatthew G. Knepley {
6605b2033f5dSMatthew G. Knepley   PetscBool ishdf5;
6606b2033f5dSMatthew G. Knepley 
6607b2033f5dSMatthew G. Knepley   PetscFunctionBegin;
6608b2033f5dSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6609b2033f5dSMatthew G. Knepley   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
6610b2033f5dSMatthew G. Knepley   PetscAssertPointer(name, 3);
6611b2033f5dSMatthew G. Knepley   PetscAssertPointer(len, 4);
6612b2033f5dSMatthew G. Knepley   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
6613b2033f5dSMatthew G. Knepley   if (ishdf5) {
6614b2033f5dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5)
6615b2033f5dSMatthew G. Knepley     PetscCall(DMSequenceGetLength_HDF5_Internal(dm, name, len, viewer));
6616b2033f5dSMatthew G. Knepley #endif
6617b2033f5dSMatthew G. Knepley   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()");
6618b2033f5dSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
6619b2033f5dSMatthew G. Knepley }
6620b2033f5dSMatthew G. Knepley 
6621b2033f5dSMatthew G. Knepley /*@
6622bb7acecfSBarry Smith   DMGetUseNatural - Get the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel
66238e4ac7eaSMatthew G. Knepley 
662420f4b53cSBarry Smith   Not Collective
66258e4ac7eaSMatthew G. Knepley 
66268e4ac7eaSMatthew G. Knepley   Input Parameter:
6627bb7acecfSBarry Smith . dm - The `DM`
66288e4ac7eaSMatthew G. Knepley 
66298e4ac7eaSMatthew G. Knepley   Output Parameter:
6630bb7acecfSBarry Smith . useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution
66318e4ac7eaSMatthew G. Knepley 
66328e4ac7eaSMatthew G. Knepley   Level: beginner
66338e4ac7eaSMatthew G. Knepley 
66341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetUseNatural()`, `DMCreate()`
66358e4ac7eaSMatthew G. Knepley @*/
6636d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetUseNatural(DM dm, PetscBool *useNatural)
6637d71ae5a4SJacob Faibussowitsch {
66388e4ac7eaSMatthew G. Knepley   PetscFunctionBegin;
66398e4ac7eaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
66404f572ea9SToby Isaac   PetscAssertPointer(useNatural, 2);
66418e4ac7eaSMatthew G. Knepley   *useNatural = dm->useNatural;
66423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
66438e4ac7eaSMatthew G. Knepley }
66448e4ac7eaSMatthew G. Knepley 
66458e4ac7eaSMatthew G. Knepley /*@
6646bb7acecfSBarry Smith   DMSetUseNatural - Set the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel
66478e4ac7eaSMatthew G. Knepley 
664820f4b53cSBarry Smith   Collective
66498e4ac7eaSMatthew G. Knepley 
66508e4ac7eaSMatthew G. Knepley   Input Parameters:
6651bb7acecfSBarry Smith + dm         - The `DM`
6652bb7acecfSBarry Smith - useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution
66538e4ac7eaSMatthew G. Knepley 
665473ff1848SBarry Smith   Level: beginner
665573ff1848SBarry Smith 
6656bb7acecfSBarry Smith   Note:
6657bb7acecfSBarry Smith   This also causes the map to be build after `DMCreateSubDM()` and `DMCreateSuperDM()`
66585d3b26e6SMatthew G. Knepley 
66591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetUseNatural()`, `DMCreate()`, `DMPlexDistribute()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
66608e4ac7eaSMatthew G. Knepley @*/
6661d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUseNatural(DM dm, PetscBool useNatural)
6662d71ae5a4SJacob Faibussowitsch {
66638e4ac7eaSMatthew G. Knepley   PetscFunctionBegin;
66648e4ac7eaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
66658833efb5SBlaise Bourdin   PetscValidLogicalCollectiveBool(dm, useNatural, 2);
66668e4ac7eaSMatthew G. Knepley   dm->useNatural = useNatural;
66673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
66688e4ac7eaSMatthew G. Knepley }
6669c58f1c22SToby Isaac 
6670cc4c1da9SBarry Smith /*@
6671bb7acecfSBarry Smith   DMCreateLabel - Create a label of the given name if it does not already exist in the `DM`
6672c58f1c22SToby Isaac 
6673c58f1c22SToby Isaac   Not Collective
6674c58f1c22SToby Isaac 
6675c58f1c22SToby Isaac   Input Parameters:
6676bb7acecfSBarry Smith + dm   - The `DM` object
6677c58f1c22SToby Isaac - name - The label name
6678c58f1c22SToby Isaac 
6679c58f1c22SToby Isaac   Level: intermediate
6680c58f1c22SToby Isaac 
66811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6682c58f1c22SToby Isaac @*/
6683d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabel(DM dm, const char name[])
6684d71ae5a4SJacob Faibussowitsch {
66855d80c0bfSVaclav Hapla   PetscBool flg;
66865d80c0bfSVaclav Hapla   DMLabel   label;
6687c58f1c22SToby Isaac 
6688c58f1c22SToby Isaac   PetscFunctionBegin;
6689c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
66904f572ea9SToby Isaac   PetscAssertPointer(name, 2);
66919566063dSJacob Faibussowitsch   PetscCall(DMHasLabel(dm, name, &flg));
6692c58f1c22SToby Isaac   if (!flg) {
66939566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label));
66949566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dm, label));
66959566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&label));
6696c58f1c22SToby Isaac   }
66973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6698c58f1c22SToby Isaac }
6699c58f1c22SToby Isaac 
6700cc4c1da9SBarry Smith /*@
6701bb7acecfSBarry Smith   DMCreateLabelAtIndex - Create a label of the given name at the given index. If it already exists in the `DM`, move it to this index.
67020fdc7489SMatthew Knepley 
67030fdc7489SMatthew Knepley   Not Collective
67040fdc7489SMatthew Knepley 
67050fdc7489SMatthew Knepley   Input Parameters:
6706bb7acecfSBarry Smith + dm   - The `DM` object
67070fdc7489SMatthew Knepley . l    - The index for the label
67080fdc7489SMatthew Knepley - name - The label name
67090fdc7489SMatthew Knepley 
67100fdc7489SMatthew Knepley   Level: intermediate
67110fdc7489SMatthew Knepley 
67121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateLabel()`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
67130fdc7489SMatthew Knepley @*/
6714d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabelAtIndex(DM dm, PetscInt l, const char name[])
6715d71ae5a4SJacob Faibussowitsch {
67160fdc7489SMatthew Knepley   DMLabelLink orig, prev = NULL;
67170fdc7489SMatthew Knepley   DMLabel     label;
67180fdc7489SMatthew Knepley   PetscInt    Nl, m;
67190fdc7489SMatthew Knepley   PetscBool   flg, match;
67200fdc7489SMatthew Knepley   const char *lname;
67210fdc7489SMatthew Knepley 
67220fdc7489SMatthew Knepley   PetscFunctionBegin;
67230fdc7489SMatthew Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
67244f572ea9SToby Isaac   PetscAssertPointer(name, 3);
67259566063dSJacob Faibussowitsch   PetscCall(DMHasLabel(dm, name, &flg));
67260fdc7489SMatthew Knepley   if (!flg) {
67279566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label));
67289566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dm, label));
67299566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&label));
67300fdc7489SMatthew Knepley   }
67319566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(dm, &Nl));
673263a3b9bcSJacob Faibussowitsch   PetscCheck(l < Nl, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label index %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", l, Nl);
67330fdc7489SMatthew Knepley   for (m = 0, orig = dm->labels; m < Nl; ++m, prev = orig, orig = orig->next) {
67349566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)orig->label, &lname));
67359566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &match));
67360fdc7489SMatthew Knepley     if (match) break;
67370fdc7489SMatthew Knepley   }
67383ba16761SJacob Faibussowitsch   if (m == l) PetscFunctionReturn(PETSC_SUCCESS);
67390fdc7489SMatthew Knepley   if (!m) dm->labels = orig->next;
67400fdc7489SMatthew Knepley   else prev->next = orig->next;
67410fdc7489SMatthew Knepley   if (!l) {
67420fdc7489SMatthew Knepley     orig->next = dm->labels;
67430fdc7489SMatthew Knepley     dm->labels = orig;
67440fdc7489SMatthew Knepley   } else {
6745fbccb6d4SPierre Jolivet     for (m = 0, prev = dm->labels; m < l - 1; ++m, prev = prev->next);
67460fdc7489SMatthew Knepley     orig->next = prev->next;
67470fdc7489SMatthew Knepley     prev->next = orig;
67480fdc7489SMatthew Knepley   }
67493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
67500fdc7489SMatthew Knepley }
67510fdc7489SMatthew Knepley 
6752cc4c1da9SBarry Smith /*@
6753bb7acecfSBarry Smith   DMGetLabelValue - Get the value in a `DMLabel` for the given point, with -1 as the default
6754c58f1c22SToby Isaac 
6755c58f1c22SToby Isaac   Not Collective
6756c58f1c22SToby Isaac 
6757c58f1c22SToby Isaac   Input Parameters:
6758bb7acecfSBarry Smith + dm    - The `DM` object
6759c58f1c22SToby Isaac . name  - The label name
6760c58f1c22SToby Isaac - point - The mesh point
6761c58f1c22SToby Isaac 
6762c58f1c22SToby Isaac   Output Parameter:
6763c58f1c22SToby Isaac . value - The label value for this point, or -1 if the point is not in the label
6764c58f1c22SToby Isaac 
6765c58f1c22SToby Isaac   Level: beginner
6766c58f1c22SToby Isaac 
67671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6768c58f1c22SToby Isaac @*/
6769d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelValue(DM dm, const char name[], PetscInt point, PetscInt *value)
6770d71ae5a4SJacob Faibussowitsch {
6771c58f1c22SToby Isaac   DMLabel label;
6772c58f1c22SToby Isaac 
6773c58f1c22SToby Isaac   PetscFunctionBegin;
6774c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
67754f572ea9SToby Isaac   PetscAssertPointer(name, 2);
67769566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
67777a8be351SBarry Smith   PetscCheck(label, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No label named %s was found", name);
67789566063dSJacob Faibussowitsch   PetscCall(DMLabelGetValue(label, point, value));
67793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6780c58f1c22SToby Isaac }
6781c58f1c22SToby Isaac 
6782cc4c1da9SBarry Smith /*@
6783bb7acecfSBarry Smith   DMSetLabelValue - Add a point to a `DMLabel` with given value
6784c58f1c22SToby Isaac 
6785c58f1c22SToby Isaac   Not Collective
6786c58f1c22SToby Isaac 
6787c58f1c22SToby Isaac   Input Parameters:
6788bb7acecfSBarry Smith + dm    - The `DM` object
6789c58f1c22SToby Isaac . name  - The label name
6790c58f1c22SToby Isaac . point - The mesh point
6791c58f1c22SToby Isaac - value - The label value for this point
6792c58f1c22SToby Isaac 
6793c58f1c22SToby Isaac   Output Parameter:
6794c58f1c22SToby Isaac 
6795c58f1c22SToby Isaac   Level: beginner
6796c58f1c22SToby Isaac 
67971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelSetValue()`, `DMGetStratumIS()`, `DMClearLabelValue()`
6798c58f1c22SToby Isaac @*/
6799d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue(DM dm, const char name[], PetscInt point, PetscInt value)
6800d71ae5a4SJacob Faibussowitsch {
6801c58f1c22SToby Isaac   DMLabel label;
6802c58f1c22SToby Isaac 
6803c58f1c22SToby Isaac   PetscFunctionBegin;
6804c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
68054f572ea9SToby Isaac   PetscAssertPointer(name, 2);
68069566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6807c58f1c22SToby Isaac   if (!label) {
68089566063dSJacob Faibussowitsch     PetscCall(DMCreateLabel(dm, name));
68099566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, name, &label));
6810c58f1c22SToby Isaac   }
68119566063dSJacob Faibussowitsch   PetscCall(DMLabelSetValue(label, point, value));
68123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6813c58f1c22SToby Isaac }
6814c58f1c22SToby Isaac 
6815cc4c1da9SBarry Smith /*@
6816bb7acecfSBarry Smith   DMClearLabelValue - Remove a point from a `DMLabel` with given value
6817c58f1c22SToby Isaac 
6818c58f1c22SToby Isaac   Not Collective
6819c58f1c22SToby Isaac 
6820c58f1c22SToby Isaac   Input Parameters:
6821bb7acecfSBarry Smith + dm    - The `DM` object
6822c58f1c22SToby Isaac . name  - The label name
6823c58f1c22SToby Isaac . point - The mesh point
6824c58f1c22SToby Isaac - value - The label value for this point
6825c58f1c22SToby Isaac 
6826c58f1c22SToby Isaac   Level: beginner
6827c58f1c22SToby Isaac 
68281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelClearValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6829c58f1c22SToby Isaac @*/
6830d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelValue(DM dm, const char name[], PetscInt point, PetscInt value)
6831d71ae5a4SJacob Faibussowitsch {
6832c58f1c22SToby Isaac   DMLabel label;
6833c58f1c22SToby Isaac 
6834c58f1c22SToby Isaac   PetscFunctionBegin;
6835c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
68364f572ea9SToby Isaac   PetscAssertPointer(name, 2);
68379566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
68383ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
68399566063dSJacob Faibussowitsch   PetscCall(DMLabelClearValue(label, point, value));
68403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6841c58f1c22SToby Isaac }
6842c58f1c22SToby Isaac 
6843cc4c1da9SBarry Smith /*@
6844bb7acecfSBarry Smith   DMGetLabelSize - Get the value of `DMLabelGetNumValues()` of a `DMLabel` in the `DM`
6845c58f1c22SToby Isaac 
6846c58f1c22SToby Isaac   Not Collective
6847c58f1c22SToby Isaac 
6848c58f1c22SToby Isaac   Input Parameters:
6849bb7acecfSBarry Smith + dm   - The `DM` object
6850c58f1c22SToby Isaac - name - The label name
6851c58f1c22SToby Isaac 
6852c58f1c22SToby Isaac   Output Parameter:
6853c58f1c22SToby Isaac . size - The number of different integer ids, or 0 if the label does not exist
6854c58f1c22SToby Isaac 
6855c58f1c22SToby Isaac   Level: beginner
6856c58f1c22SToby Isaac 
685773ff1848SBarry Smith   Developer Note:
6858bb7acecfSBarry Smith   This should be renamed to something like `DMGetLabelNumValues()` or removed.
6859bb7acecfSBarry Smith 
68601cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetNumValues()`, `DMSetLabelValue()`, `DMGetLabel()`
6861c58f1c22SToby Isaac @*/
6862d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelSize(DM dm, const char name[], PetscInt *size)
6863d71ae5a4SJacob Faibussowitsch {
6864c58f1c22SToby Isaac   DMLabel label;
6865c58f1c22SToby Isaac 
6866c58f1c22SToby Isaac   PetscFunctionBegin;
6867c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
68684f572ea9SToby Isaac   PetscAssertPointer(name, 2);
68694f572ea9SToby Isaac   PetscAssertPointer(size, 3);
68709566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6871c58f1c22SToby Isaac   *size = 0;
68723ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
68739566063dSJacob Faibussowitsch   PetscCall(DMLabelGetNumValues(label, size));
68743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6875c58f1c22SToby Isaac }
6876c58f1c22SToby Isaac 
6877cc4c1da9SBarry Smith /*@
6878bb7acecfSBarry Smith   DMGetLabelIdIS - Get the `DMLabelGetValueIS()` from a `DMLabel` in the `DM`
6879c58f1c22SToby Isaac 
6880c58f1c22SToby Isaac   Not Collective
6881c58f1c22SToby Isaac 
6882c58f1c22SToby Isaac   Input Parameters:
688360225df5SJacob Faibussowitsch + dm   - The `DM` object
6884c58f1c22SToby Isaac - name - The label name
6885c58f1c22SToby Isaac 
6886c58f1c22SToby Isaac   Output Parameter:
688720f4b53cSBarry Smith . ids - The integer ids, or `NULL` if the label does not exist
6888c58f1c22SToby Isaac 
6889c58f1c22SToby Isaac   Level: beginner
6890c58f1c22SToby Isaac 
68911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValueIS()`, `DMGetLabelSize()`
6892c58f1c22SToby Isaac @*/
6893d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelIdIS(DM dm, const char name[], IS *ids)
6894d71ae5a4SJacob Faibussowitsch {
6895c58f1c22SToby Isaac   DMLabel label;
6896c58f1c22SToby Isaac 
6897c58f1c22SToby Isaac   PetscFunctionBegin;
6898c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
68994f572ea9SToby Isaac   PetscAssertPointer(name, 2);
69004f572ea9SToby Isaac   PetscAssertPointer(ids, 3);
69019566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6902c58f1c22SToby Isaac   *ids = NULL;
6903dab2e251SBlaise Bourdin   if (label) {
69049566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValueIS(label, ids));
6905dab2e251SBlaise Bourdin   } else {
6906dab2e251SBlaise Bourdin     /* returning an empty IS */
69079566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_USE_POINTER, ids));
6908dab2e251SBlaise Bourdin   }
69093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6910c58f1c22SToby Isaac }
6911c58f1c22SToby Isaac 
6912cc4c1da9SBarry Smith /*@
6913c58f1c22SToby Isaac   DMGetStratumSize - Get the number of points in a label stratum
6914c58f1c22SToby Isaac 
6915c58f1c22SToby Isaac   Not Collective
6916c58f1c22SToby Isaac 
6917c58f1c22SToby Isaac   Input Parameters:
6918bb7acecfSBarry Smith + dm    - The `DM` object
6919b6971eaeSBarry Smith . name  - The label name of the stratum
6920c58f1c22SToby Isaac - value - The stratum value
6921c58f1c22SToby Isaac 
6922c58f1c22SToby Isaac   Output Parameter:
6923bb7acecfSBarry Smith . size - The number of points, also called the stratum size
6924c58f1c22SToby Isaac 
6925c58f1c22SToby Isaac   Level: beginner
6926c58f1c22SToby Isaac 
69271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumSize()`, `DMGetLabelSize()`, `DMGetLabelIds()`
6928c58f1c22SToby Isaac @*/
6929d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumSize(DM dm, const char name[], PetscInt value, PetscInt *size)
6930d71ae5a4SJacob Faibussowitsch {
6931c58f1c22SToby Isaac   DMLabel label;
6932c58f1c22SToby Isaac 
6933c58f1c22SToby Isaac   PetscFunctionBegin;
6934c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
69354f572ea9SToby Isaac   PetscAssertPointer(name, 2);
69364f572ea9SToby Isaac   PetscAssertPointer(size, 4);
69379566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6938c58f1c22SToby Isaac   *size = 0;
69393ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
69409566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumSize(label, value, size));
69413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6942c58f1c22SToby Isaac }
6943c58f1c22SToby Isaac 
6944cc4c1da9SBarry Smith /*@
6945c58f1c22SToby Isaac   DMGetStratumIS - Get the points in a label stratum
6946c58f1c22SToby Isaac 
6947c58f1c22SToby Isaac   Not Collective
6948c58f1c22SToby Isaac 
6949c58f1c22SToby Isaac   Input Parameters:
6950bb7acecfSBarry Smith + dm    - The `DM` object
6951c58f1c22SToby Isaac . name  - The label name
6952c58f1c22SToby Isaac - value - The stratum value
6953c58f1c22SToby Isaac 
6954c58f1c22SToby Isaac   Output Parameter:
695520f4b53cSBarry Smith . points - The stratum points, or `NULL` if the label does not exist or does not have that value
6956c58f1c22SToby Isaac 
6957c58f1c22SToby Isaac   Level: beginner
6958c58f1c22SToby Isaac 
69591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumIS()`, `DMGetStratumSize()`
6960c58f1c22SToby Isaac @*/
6961d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumIS(DM dm, const char name[], PetscInt value, IS *points)
6962d71ae5a4SJacob Faibussowitsch {
6963c58f1c22SToby Isaac   DMLabel label;
6964c58f1c22SToby Isaac 
6965c58f1c22SToby Isaac   PetscFunctionBegin;
6966c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
69674f572ea9SToby Isaac   PetscAssertPointer(name, 2);
69684f572ea9SToby Isaac   PetscAssertPointer(points, 4);
69699566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6970c58f1c22SToby Isaac   *points = NULL;
69713ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
69729566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(label, value, points));
69733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6974c58f1c22SToby Isaac }
6975c58f1c22SToby Isaac 
6976cc4c1da9SBarry Smith /*@
69779044fa66SMatthew G. Knepley   DMSetStratumIS - Set the points in a label stratum
69784de306b1SToby Isaac 
69794de306b1SToby Isaac   Not Collective
69804de306b1SToby Isaac 
69814de306b1SToby Isaac   Input Parameters:
6982bb7acecfSBarry Smith + dm     - The `DM` object
69834de306b1SToby Isaac . name   - The label name
69844de306b1SToby Isaac . value  - The stratum value
69854de306b1SToby Isaac - points - The stratum points
69864de306b1SToby Isaac 
69874de306b1SToby Isaac   Level: beginner
69884de306b1SToby Isaac 
69891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMClearLabelStratum()`, `DMLabelClearStratum()`, `DMLabelSetStratumIS()`, `DMGetStratumSize()`
69904de306b1SToby Isaac @*/
6991d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetStratumIS(DM dm, const char name[], PetscInt value, IS points)
6992d71ae5a4SJacob Faibussowitsch {
69934de306b1SToby Isaac   DMLabel label;
69944de306b1SToby Isaac 
69954de306b1SToby Isaac   PetscFunctionBegin;
69964de306b1SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
69974f572ea9SToby Isaac   PetscAssertPointer(name, 2);
6998292bffcbSToby Isaac   PetscValidHeaderSpecific(points, IS_CLASSID, 4);
69999566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
70003ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
70019566063dSJacob Faibussowitsch   PetscCall(DMLabelSetStratumIS(label, value, points));
70023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70034de306b1SToby Isaac }
70044de306b1SToby Isaac 
7005cc4c1da9SBarry Smith /*@
7006bb7acecfSBarry Smith   DMClearLabelStratum - Remove all points from a stratum from a `DMLabel`
7007c58f1c22SToby Isaac 
7008c58f1c22SToby Isaac   Not Collective
7009c58f1c22SToby Isaac 
7010c58f1c22SToby Isaac   Input Parameters:
7011bb7acecfSBarry Smith + dm    - The `DM` object
7012c58f1c22SToby Isaac . name  - The label name
7013c58f1c22SToby Isaac - value - The label value for this point
7014c58f1c22SToby Isaac 
7015c58f1c22SToby Isaac   Output Parameter:
7016c58f1c22SToby Isaac 
7017c58f1c22SToby Isaac   Level: beginner
7018c58f1c22SToby Isaac 
70191cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMLabelClearStratum()`, `DMSetLabelValue()`, `DMGetStratumIS()`, `DMClearLabelValue()`
7020c58f1c22SToby Isaac @*/
7021d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelStratum(DM dm, const char name[], PetscInt value)
7022d71ae5a4SJacob Faibussowitsch {
7023c58f1c22SToby Isaac   DMLabel label;
7024c58f1c22SToby Isaac 
7025c58f1c22SToby Isaac   PetscFunctionBegin;
7026c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
70274f572ea9SToby Isaac   PetscAssertPointer(name, 2);
70289566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
70293ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
70309566063dSJacob Faibussowitsch   PetscCall(DMLabelClearStratum(label, value));
70313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7032c58f1c22SToby Isaac }
7033c58f1c22SToby Isaac 
7034c58f1c22SToby Isaac /*@
7035bb7acecfSBarry Smith   DMGetNumLabels - Return the number of labels defined by on the `DM`
7036c58f1c22SToby Isaac 
7037c58f1c22SToby Isaac   Not Collective
7038c58f1c22SToby Isaac 
7039c58f1c22SToby Isaac   Input Parameter:
7040bb7acecfSBarry Smith . dm - The `DM` object
7041c58f1c22SToby Isaac 
7042c58f1c22SToby Isaac   Output Parameter:
7043c58f1c22SToby Isaac . numLabels - the number of Labels
7044c58f1c22SToby Isaac 
7045c58f1c22SToby Isaac   Level: intermediate
7046c58f1c22SToby Isaac 
70471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabelName()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7048c58f1c22SToby Isaac @*/
7049d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumLabels(DM dm, PetscInt *numLabels)
7050d71ae5a4SJacob Faibussowitsch {
70515d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7052c58f1c22SToby Isaac   PetscInt    n    = 0;
7053c58f1c22SToby Isaac 
7054c58f1c22SToby Isaac   PetscFunctionBegin;
7055c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
70564f572ea9SToby Isaac   PetscAssertPointer(numLabels, 2);
70579371c9d4SSatish Balay   while (next) {
70589371c9d4SSatish Balay     ++n;
70599371c9d4SSatish Balay     next = next->next;
70609371c9d4SSatish Balay   }
7061c58f1c22SToby Isaac   *numLabels = n;
70623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7063c58f1c22SToby Isaac }
7064c58f1c22SToby Isaac 
7065cc4c1da9SBarry Smith /*@
7066c58f1c22SToby Isaac   DMGetLabelName - Return the name of nth label
7067c58f1c22SToby Isaac 
7068c58f1c22SToby Isaac   Not Collective
7069c58f1c22SToby Isaac 
7070c58f1c22SToby Isaac   Input Parameters:
7071bb7acecfSBarry Smith + dm - The `DM` object
7072c58f1c22SToby Isaac - n  - the label number
7073c58f1c22SToby Isaac 
7074c58f1c22SToby Isaac   Output Parameter:
7075c58f1c22SToby Isaac . name - the label name
7076c58f1c22SToby Isaac 
7077c58f1c22SToby Isaac   Level: intermediate
7078c58f1c22SToby Isaac 
707973ff1848SBarry Smith   Developer Note:
7080bb7acecfSBarry Smith   Some of the functions that appropriate on labels using their number have the suffix ByNum, others do not.
7081bb7acecfSBarry Smith 
70821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7083c58f1c22SToby Isaac @*/
7084cc4c1da9SBarry Smith PetscErrorCode DMGetLabelName(DM dm, PetscInt n, const char *name[])
7085d71ae5a4SJacob Faibussowitsch {
70865d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7087c58f1c22SToby Isaac   PetscInt    l    = 0;
7088c58f1c22SToby Isaac 
7089c58f1c22SToby Isaac   PetscFunctionBegin;
7090c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
70914f572ea9SToby Isaac   PetscAssertPointer(name, 3);
7092c58f1c22SToby Isaac   while (next) {
7093c58f1c22SToby Isaac     if (l == n) {
70949566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetName((PetscObject)next->label, name));
70953ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
7096c58f1c22SToby Isaac     }
7097c58f1c22SToby Isaac     ++l;
7098c58f1c22SToby Isaac     next = next->next;
7099c58f1c22SToby Isaac   }
710063a3b9bcSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n);
7101c58f1c22SToby Isaac }
7102c58f1c22SToby Isaac 
7103cc4c1da9SBarry Smith /*@
7104bb7acecfSBarry Smith   DMHasLabel - Determine whether the `DM` has a label of a given name
7105c58f1c22SToby Isaac 
7106c58f1c22SToby Isaac   Not Collective
7107c58f1c22SToby Isaac 
7108c58f1c22SToby Isaac   Input Parameters:
7109bb7acecfSBarry Smith + dm   - The `DM` object
7110c58f1c22SToby Isaac - name - The label name
7111c58f1c22SToby Isaac 
7112c58f1c22SToby Isaac   Output Parameter:
7113bb7acecfSBarry Smith . hasLabel - `PETSC_TRUE` if the label is present
7114c58f1c22SToby Isaac 
7115c58f1c22SToby Isaac   Level: intermediate
7116c58f1c22SToby Isaac 
71171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabel()`, `DMGetLabelByNum()`, `DMCreateLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7118c58f1c22SToby Isaac @*/
7119d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasLabel(DM dm, const char name[], PetscBool *hasLabel)
7120d71ae5a4SJacob Faibussowitsch {
71215d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7122d67d17b1SMatthew G. Knepley   const char *lname;
7123c58f1c22SToby Isaac 
7124c58f1c22SToby Isaac   PetscFunctionBegin;
7125c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
71264f572ea9SToby Isaac   PetscAssertPointer(name, 2);
71274f572ea9SToby Isaac   PetscAssertPointer(hasLabel, 3);
7128c58f1c22SToby Isaac   *hasLabel = PETSC_FALSE;
7129c58f1c22SToby Isaac   while (next) {
71309566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
71319566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, hasLabel));
7132c58f1c22SToby Isaac     if (*hasLabel) break;
7133c58f1c22SToby Isaac     next = next->next;
7134c58f1c22SToby Isaac   }
71353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7136c58f1c22SToby Isaac }
7137c58f1c22SToby Isaac 
7138a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown
7139cc4c1da9SBarry Smith /*@
714020f4b53cSBarry Smith   DMGetLabel - Return the label of a given name, or `NULL`, from a `DM`
7141c58f1c22SToby Isaac 
7142c58f1c22SToby Isaac   Not Collective
7143c58f1c22SToby Isaac 
7144c58f1c22SToby Isaac   Input Parameters:
7145bb7acecfSBarry Smith + dm   - The `DM` object
7146c58f1c22SToby Isaac - name - The label name
7147c58f1c22SToby Isaac 
7148c58f1c22SToby Isaac   Output Parameter:
714920f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent
7150c58f1c22SToby Isaac 
7151bb7acecfSBarry Smith   Default labels in a `DMPLEX`:
7152bb7acecfSBarry Smith + "depth"       - Holds the depth (co-dimension) of each mesh point
7153bb7acecfSBarry Smith . "celltype"    - Holds the topological type of each cell
7154bb7acecfSBarry Smith . "ghost"       - If the DM is distributed with overlap, this marks the cells and faces in the overlap
7155bb7acecfSBarry Smith . "Cell Sets"   - Mirrors the cell sets defined by GMsh and ExodusII
7156bb7acecfSBarry Smith . "Face Sets"   - Mirrors the face sets defined by GMsh and ExodusII
7157bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh
71586d7c9049SMatthew G. Knepley 
7159c58f1c22SToby Isaac   Level: intermediate
7160c58f1c22SToby Isaac 
716160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMHasLabel()`, `DMGetLabelByNum()`, `DMAddLabel()`, `DMCreateLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()`
7162c58f1c22SToby Isaac @*/
7163d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabel(DM dm, const char name[], DMLabel *label)
7164d71ae5a4SJacob Faibussowitsch {
71655d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7166c58f1c22SToby Isaac   PetscBool   hasLabel;
7167d67d17b1SMatthew G. Knepley   const char *lname;
7168c58f1c22SToby Isaac 
7169c58f1c22SToby Isaac   PetscFunctionBegin;
7170c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
71714f572ea9SToby Isaac   PetscAssertPointer(name, 2);
71724f572ea9SToby Isaac   PetscAssertPointer(label, 3);
7173c58f1c22SToby Isaac   *label = NULL;
7174c58f1c22SToby Isaac   while (next) {
71759566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
71769566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &hasLabel));
7177c58f1c22SToby Isaac     if (hasLabel) {
7178c58f1c22SToby Isaac       *label = next->label;
7179c58f1c22SToby Isaac       break;
7180c58f1c22SToby Isaac     }
7181c58f1c22SToby Isaac     next = next->next;
7182c58f1c22SToby Isaac   }
71833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7184c58f1c22SToby Isaac }
7185c58f1c22SToby Isaac 
7186cc4c1da9SBarry Smith /*@
7187bb7acecfSBarry Smith   DMGetLabelByNum - Return the nth label on a `DM`
7188c58f1c22SToby Isaac 
7189c58f1c22SToby Isaac   Not Collective
7190c58f1c22SToby Isaac 
7191c58f1c22SToby Isaac   Input Parameters:
7192bb7acecfSBarry Smith + dm - The `DM` object
7193c58f1c22SToby Isaac - n  - the label number
7194c58f1c22SToby Isaac 
7195c58f1c22SToby Isaac   Output Parameter:
7196c58f1c22SToby Isaac . label - the label
7197c58f1c22SToby Isaac 
7198c58f1c22SToby Isaac   Level: intermediate
7199c58f1c22SToby Isaac 
72001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7201c58f1c22SToby Isaac @*/
7202d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelByNum(DM dm, PetscInt n, DMLabel *label)
7203d71ae5a4SJacob Faibussowitsch {
72045d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7205c58f1c22SToby Isaac   PetscInt    l    = 0;
7206c58f1c22SToby Isaac 
7207c58f1c22SToby Isaac   PetscFunctionBegin;
7208c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
72094f572ea9SToby Isaac   PetscAssertPointer(label, 3);
7210c58f1c22SToby Isaac   while (next) {
7211c58f1c22SToby Isaac     if (l == n) {
7212c58f1c22SToby Isaac       *label = next->label;
72133ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
7214c58f1c22SToby Isaac     }
7215c58f1c22SToby Isaac     ++l;
7216c58f1c22SToby Isaac     next = next->next;
7217c58f1c22SToby Isaac   }
721863a3b9bcSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n);
7219c58f1c22SToby Isaac }
7220c58f1c22SToby Isaac 
7221cc4c1da9SBarry Smith /*@
7222bb7acecfSBarry Smith   DMAddLabel - Add the label to this `DM`
7223c58f1c22SToby Isaac 
7224c58f1c22SToby Isaac   Not Collective
7225c58f1c22SToby Isaac 
7226c58f1c22SToby Isaac   Input Parameters:
7227bb7acecfSBarry Smith + dm    - The `DM` object
7228bb7acecfSBarry Smith - label - The `DMLabel`
7229c58f1c22SToby Isaac 
7230c58f1c22SToby Isaac   Level: developer
7231c58f1c22SToby Isaac 
723260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7233c58f1c22SToby Isaac @*/
7234d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddLabel(DM dm, DMLabel label)
7235d71ae5a4SJacob Faibussowitsch {
72365d80c0bfSVaclav Hapla   DMLabelLink l, *p, tmpLabel;
7237c58f1c22SToby Isaac   PetscBool   hasLabel;
7238d67d17b1SMatthew G. Knepley   const char *lname;
72395d80c0bfSVaclav Hapla   PetscBool   flg;
7240c58f1c22SToby Isaac 
7241c58f1c22SToby Isaac   PetscFunctionBegin;
7242c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
72439566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetName((PetscObject)label, &lname));
72449566063dSJacob Faibussowitsch   PetscCall(DMHasLabel(dm, lname, &hasLabel));
72457a8be351SBarry Smith   PetscCheck(!hasLabel, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in this DM", lname);
72469566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(1, &tmpLabel));
7247c58f1c22SToby Isaac   tmpLabel->label  = label;
7248c58f1c22SToby Isaac   tmpLabel->output = PETSC_TRUE;
72495d80c0bfSVaclav Hapla   for (p = &dm->labels; (l = *p); p = &l->next) { }
72505d80c0bfSVaclav Hapla   *p = tmpLabel;
72519566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
72529566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(lname, "depth", &flg));
72535d80c0bfSVaclav Hapla   if (flg) dm->depthLabel = label;
72549566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(lname, "celltype", &flg));
7255ba2698f1SMatthew G. Knepley   if (flg) dm->celltypeLabel = label;
72563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7257c58f1c22SToby Isaac }
7258c58f1c22SToby Isaac 
7259a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown
7260cc4c1da9SBarry Smith /*@
72614a7ee7d0SMatthew G. Knepley   DMSetLabel - Replaces the label of a given name, or ignores it if the name is not present
72624a7ee7d0SMatthew G. Knepley 
72634a7ee7d0SMatthew G. Knepley   Not Collective
72644a7ee7d0SMatthew G. Knepley 
72654a7ee7d0SMatthew G. Knepley   Input Parameters:
7266bb7acecfSBarry Smith + dm    - The `DM` object
7267bb7acecfSBarry Smith - label - The `DMLabel`, having the same name, to substitute
72684a7ee7d0SMatthew G. Knepley 
7269bb7acecfSBarry Smith   Default labels in a `DMPLEX`:
7270bb7acecfSBarry Smith + "depth"       - Holds the depth (co-dimension) of each mesh point
7271bb7acecfSBarry Smith . "celltype"    - Holds the topological type of each cell
7272bb7acecfSBarry Smith . "ghost"       - If the DM is distributed with overlap, this marks the cells and faces in the overlap
7273bb7acecfSBarry Smith . "Cell Sets"   - Mirrors the cell sets defined by GMsh and ExodusII
7274bb7acecfSBarry Smith . "Face Sets"   - Mirrors the face sets defined by GMsh and ExodusII
7275bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh
72764a7ee7d0SMatthew G. Knepley 
72774a7ee7d0SMatthew G. Knepley   Level: intermediate
72784a7ee7d0SMatthew G. Knepley 
72791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()`
72804a7ee7d0SMatthew G. Knepley @*/
7281d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabel(DM dm, DMLabel label)
7282d71ae5a4SJacob Faibussowitsch {
72834a7ee7d0SMatthew G. Knepley   DMLabelLink next = dm->labels;
72844a7ee7d0SMatthew G. Knepley   PetscBool   hasLabel, flg;
72854a7ee7d0SMatthew G. Knepley   const char *name, *lname;
72864a7ee7d0SMatthew G. Knepley 
72874a7ee7d0SMatthew G. Knepley   PetscFunctionBegin;
72884a7ee7d0SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
72894a7ee7d0SMatthew G. Knepley   PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
72909566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetName((PetscObject)label, &name));
72914a7ee7d0SMatthew G. Knepley   while (next) {
72929566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
72939566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &hasLabel));
72944a7ee7d0SMatthew G. Knepley     if (hasLabel) {
72959566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)label));
72969566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(lname, "depth", &flg));
72974a7ee7d0SMatthew G. Knepley       if (flg) dm->depthLabel = label;
72989566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(lname, "celltype", &flg));
72994a7ee7d0SMatthew G. Knepley       if (flg) dm->celltypeLabel = label;
73009566063dSJacob Faibussowitsch       PetscCall(DMLabelDestroy(&next->label));
73014a7ee7d0SMatthew G. Knepley       next->label = label;
73024a7ee7d0SMatthew G. Knepley       break;
73034a7ee7d0SMatthew G. Knepley     }
73044a7ee7d0SMatthew G. Knepley     next = next->next;
73054a7ee7d0SMatthew G. Knepley   }
73063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
73074a7ee7d0SMatthew G. Knepley }
73084a7ee7d0SMatthew G. Knepley 
7309cc4c1da9SBarry Smith /*@
7310bb7acecfSBarry Smith   DMRemoveLabel - Remove the label given by name from this `DM`
7311c58f1c22SToby Isaac 
7312c58f1c22SToby Isaac   Not Collective
7313c58f1c22SToby Isaac 
7314c58f1c22SToby Isaac   Input Parameters:
7315bb7acecfSBarry Smith + dm   - The `DM` object
7316c58f1c22SToby Isaac - name - The label name
7317c58f1c22SToby Isaac 
7318c58f1c22SToby Isaac   Output Parameter:
731920f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent. Pass in `NULL` to call `DMLabelDestroy()` on the label, otherwise the
7320bb7acecfSBarry Smith           caller is responsible for calling `DMLabelDestroy()`.
7321c58f1c22SToby Isaac 
7322c58f1c22SToby Isaac   Level: developer
7323c58f1c22SToby Isaac 
73241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabelBySelf()`
7325c58f1c22SToby Isaac @*/
7326d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabel(DM dm, const char name[], DMLabel *label)
7327d71ae5a4SJacob Faibussowitsch {
732895d578d6SVaclav Hapla   DMLabelLink link, *pnext;
7329c58f1c22SToby Isaac   PetscBool   hasLabel;
7330d67d17b1SMatthew G. Knepley   const char *lname;
7331c58f1c22SToby Isaac 
7332c58f1c22SToby Isaac   PetscFunctionBegin;
7333c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
73344f572ea9SToby Isaac   PetscAssertPointer(name, 2);
7335e5472504SVaclav Hapla   if (label) {
73364f572ea9SToby Isaac     PetscAssertPointer(label, 3);
7337c58f1c22SToby Isaac     *label = NULL;
7338e5472504SVaclav Hapla   }
73395d80c0bfSVaclav Hapla   for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) {
73409566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)link->label, &lname));
73419566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &hasLabel));
7342c58f1c22SToby Isaac     if (hasLabel) {
734395d578d6SVaclav Hapla       *pnext = link->next; /* Remove from list */
73449566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "depth", &hasLabel));
734595d578d6SVaclav Hapla       if (hasLabel) dm->depthLabel = NULL;
73469566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "celltype", &hasLabel));
7347ba2698f1SMatthew G. Knepley       if (hasLabel) dm->celltypeLabel = NULL;
734895d578d6SVaclav Hapla       if (label) *label = link->label;
73499566063dSJacob Faibussowitsch       else PetscCall(DMLabelDestroy(&link->label));
73509566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
7351c58f1c22SToby Isaac       break;
7352c58f1c22SToby Isaac     }
7353c58f1c22SToby Isaac   }
73543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7355c58f1c22SToby Isaac }
7356c58f1c22SToby Isaac 
7357306894acSVaclav Hapla /*@
7358bb7acecfSBarry Smith   DMRemoveLabelBySelf - Remove the label from this `DM`
7359306894acSVaclav Hapla 
7360306894acSVaclav Hapla   Not Collective
7361306894acSVaclav Hapla 
7362306894acSVaclav Hapla   Input Parameters:
7363bb7acecfSBarry Smith + dm           - The `DM` object
7364bb7acecfSBarry Smith . label        - The `DMLabel` to be removed from the `DM`
736520f4b53cSBarry Smith - failNotFound - Should it fail if the label is not found in the `DM`?
7366306894acSVaclav Hapla 
7367306894acSVaclav Hapla   Level: developer
7368306894acSVaclav Hapla 
7369bb7acecfSBarry Smith   Note:
7370306894acSVaclav Hapla   Only exactly the same instance is removed if found, name match is ignored.
7371bb7acecfSBarry Smith   If the `DM` has an exclusive reference to the label, the label gets destroyed and
7372306894acSVaclav Hapla   *label nullified.
7373306894acSVaclav Hapla 
73741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()` `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabel()`
7375306894acSVaclav Hapla @*/
7376d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabelBySelf(DM dm, DMLabel *label, PetscBool failNotFound)
7377d71ae5a4SJacob Faibussowitsch {
737843e45a93SVaclav Hapla   DMLabelLink link, *pnext;
7379306894acSVaclav Hapla   PetscBool   hasLabel = PETSC_FALSE;
7380306894acSVaclav Hapla 
7381306894acSVaclav Hapla   PetscFunctionBegin;
7382306894acSVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
73834f572ea9SToby Isaac   PetscAssertPointer(label, 2);
73843ba16761SJacob Faibussowitsch   if (!*label && !failNotFound) PetscFunctionReturn(PETSC_SUCCESS);
7385306894acSVaclav Hapla   PetscValidHeaderSpecific(*label, DMLABEL_CLASSID, 2);
7386306894acSVaclav Hapla   PetscValidLogicalCollectiveBool(dm, failNotFound, 3);
73875d80c0bfSVaclav Hapla   for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) {
738843e45a93SVaclav Hapla     if (*label == link->label) {
7389306894acSVaclav Hapla       hasLabel = PETSC_TRUE;
739043e45a93SVaclav Hapla       *pnext   = link->next; /* Remove from list */
7391306894acSVaclav Hapla       if (*label == dm->depthLabel) dm->depthLabel = NULL;
7392ba2698f1SMatthew G. Knepley       if (*label == dm->celltypeLabel) dm->celltypeLabel = NULL;
739343e45a93SVaclav Hapla       if (((PetscObject)link->label)->refct < 2) *label = NULL; /* nullify if exclusive reference */
73949566063dSJacob Faibussowitsch       PetscCall(DMLabelDestroy(&link->label));
73959566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
7396306894acSVaclav Hapla       break;
7397306894acSVaclav Hapla     }
7398306894acSVaclav Hapla   }
73997a8be351SBarry Smith   PetscCheck(hasLabel || !failNotFound, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Given label not found in DM");
74003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7401306894acSVaclav Hapla }
7402306894acSVaclav Hapla 
7403cc4c1da9SBarry Smith /*@
7404c58f1c22SToby Isaac   DMGetLabelOutput - Get the output flag for a given label
7405c58f1c22SToby Isaac 
7406c58f1c22SToby Isaac   Not Collective
7407c58f1c22SToby Isaac 
7408c58f1c22SToby Isaac   Input Parameters:
7409bb7acecfSBarry Smith + dm   - The `DM` object
7410c58f1c22SToby Isaac - name - The label name
7411c58f1c22SToby Isaac 
7412c58f1c22SToby Isaac   Output Parameter:
7413c58f1c22SToby Isaac . output - The flag for output
7414c58f1c22SToby Isaac 
7415c58f1c22SToby Isaac   Level: developer
7416c58f1c22SToby Isaac 
74171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMSetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7418c58f1c22SToby Isaac @*/
7419d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelOutput(DM dm, const char name[], PetscBool *output)
7420d71ae5a4SJacob Faibussowitsch {
74215d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7422d67d17b1SMatthew G. Knepley   const char *lname;
7423c58f1c22SToby Isaac 
7424c58f1c22SToby Isaac   PetscFunctionBegin;
7425c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
74264f572ea9SToby Isaac   PetscAssertPointer(name, 2);
74274f572ea9SToby Isaac   PetscAssertPointer(output, 3);
7428c58f1c22SToby Isaac   while (next) {
7429c58f1c22SToby Isaac     PetscBool flg;
7430c58f1c22SToby Isaac 
74319566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
74329566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &flg));
74339371c9d4SSatish Balay     if (flg) {
74349371c9d4SSatish Balay       *output = next->output;
74353ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
74369371c9d4SSatish Balay     }
7437c58f1c22SToby Isaac     next = next->next;
7438c58f1c22SToby Isaac   }
743998921bdaSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name);
7440c58f1c22SToby Isaac }
7441c58f1c22SToby Isaac 
7442cc4c1da9SBarry Smith /*@
7443bb7acecfSBarry Smith   DMSetLabelOutput - Set if a given label should be saved to a `PetscViewer` in calls to `DMView()`
7444c58f1c22SToby Isaac 
7445c58f1c22SToby Isaac   Not Collective
7446c58f1c22SToby Isaac 
7447c58f1c22SToby Isaac   Input Parameters:
7448bb7acecfSBarry Smith + dm     - The `DM` object
7449c58f1c22SToby Isaac . name   - The label name
7450bb7acecfSBarry Smith - output - `PETSC_TRUE` to save the label to the viewer
7451c58f1c22SToby Isaac 
7452c58f1c22SToby Isaac   Level: developer
7453c58f1c22SToby Isaac 
74541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetOutputFlag()`, `DMGetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7455c58f1c22SToby Isaac @*/
7456d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelOutput(DM dm, const char name[], PetscBool output)
7457d71ae5a4SJacob Faibussowitsch {
74585d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7459d67d17b1SMatthew G. Knepley   const char *lname;
7460c58f1c22SToby Isaac 
7461c58f1c22SToby Isaac   PetscFunctionBegin;
7462c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
74634f572ea9SToby Isaac   PetscAssertPointer(name, 2);
7464c58f1c22SToby Isaac   while (next) {
7465c58f1c22SToby Isaac     PetscBool flg;
7466c58f1c22SToby Isaac 
74679566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
74689566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &flg));
74699371c9d4SSatish Balay     if (flg) {
74709371c9d4SSatish Balay       next->output = output;
74713ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
74729371c9d4SSatish Balay     }
7473c58f1c22SToby Isaac     next = next->next;
7474c58f1c22SToby Isaac   }
747598921bdaSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name);
7476c58f1c22SToby Isaac }
7477c58f1c22SToby Isaac 
7478c58f1c22SToby Isaac /*@
7479bb7acecfSBarry Smith   DMCopyLabels - Copy labels from one `DM` mesh to another `DM` with a superset of the points
7480c58f1c22SToby Isaac 
748120f4b53cSBarry Smith   Collective
7482c58f1c22SToby Isaac 
7483d8d19677SJose E. Roman   Input Parameters:
7484bb7acecfSBarry Smith + dmA   - The `DM` object with initial labels
7485bb7acecfSBarry Smith . dmB   - The `DM` object to which labels are copied
7486bb7acecfSBarry Smith . mode  - Copy labels by pointers (`PETSC_OWN_POINTER`) or duplicate them (`PETSC_COPY_VALUES`)
7487bb7acecfSBarry Smith . all   - Copy all labels including "depth", "dim", and "celltype" (`PETSC_TRUE`) which are otherwise ignored (`PETSC_FALSE`)
7488bb7acecfSBarry Smith - emode - How to behave when a `DMLabel` in the source and destination `DM`s with the same name is encountered (see `DMCopyLabelsMode`)
7489c58f1c22SToby Isaac 
7490c58f1c22SToby Isaac   Level: intermediate
7491c58f1c22SToby Isaac 
7492bb7acecfSBarry Smith   Note:
74932cbb9b06SVaclav Hapla   This is typically used when interpolating or otherwise adding to a mesh, or testing.
7494c58f1c22SToby Isaac 
74951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`
7496c58f1c22SToby Isaac @*/
7497d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyLabels(DM dmA, DM dmB, PetscCopyMode mode, PetscBool all, DMCopyLabelsMode emode)
7498d71ae5a4SJacob Faibussowitsch {
74992cbb9b06SVaclav Hapla   DMLabel     label, labelNew, labelOld;
7500c58f1c22SToby Isaac   const char *name;
7501c58f1c22SToby Isaac   PetscBool   flg;
75025d80c0bfSVaclav Hapla   DMLabelLink link;
7503c58f1c22SToby Isaac 
75045d80c0bfSVaclav Hapla   PetscFunctionBegin;
75055d80c0bfSVaclav Hapla   PetscValidHeaderSpecific(dmA, DM_CLASSID, 1);
75065d80c0bfSVaclav Hapla   PetscValidHeaderSpecific(dmB, DM_CLASSID, 2);
75075d80c0bfSVaclav Hapla   PetscValidLogicalCollectiveEnum(dmA, mode, 3);
75085d80c0bfSVaclav Hapla   PetscValidLogicalCollectiveBool(dmA, all, 4);
75097a8be351SBarry Smith   PetscCheck(mode != PETSC_USE_POINTER, PetscObjectComm((PetscObject)dmA), PETSC_ERR_SUP, "PETSC_USE_POINTER not supported for objects");
75103ba16761SJacob Faibussowitsch   if (dmA == dmB) PetscFunctionReturn(PETSC_SUCCESS);
75115d80c0bfSVaclav Hapla   for (link = dmA->labels; link; link = link->next) {
75125d80c0bfSVaclav Hapla     label = link->label;
75139566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)label, &name));
75145d80c0bfSVaclav Hapla     if (!all) {
75159566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "depth", &flg));
7516c58f1c22SToby Isaac       if (flg) continue;
75179566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "dim", &flg));
75187d5acc75SStefano Zampini       if (flg) continue;
75199566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "celltype", &flg));
7520ba2698f1SMatthew G. Knepley       if (flg) continue;
75215d80c0bfSVaclav Hapla     }
75229566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dmB, name, &labelOld));
75232cbb9b06SVaclav Hapla     if (labelOld) {
75242cbb9b06SVaclav Hapla       switch (emode) {
7525d71ae5a4SJacob Faibussowitsch       case DM_COPY_LABELS_KEEP:
7526d71ae5a4SJacob Faibussowitsch         continue;
7527d71ae5a4SJacob Faibussowitsch       case DM_COPY_LABELS_REPLACE:
7528d71ae5a4SJacob Faibussowitsch         PetscCall(DMRemoveLabelBySelf(dmB, &labelOld, PETSC_TRUE));
7529d71ae5a4SJacob Faibussowitsch         break;
7530d71ae5a4SJacob Faibussowitsch       case DM_COPY_LABELS_FAIL:
7531d71ae5a4SJacob Faibussowitsch         SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in destination DM", name);
7532d71ae5a4SJacob Faibussowitsch       default:
7533d71ae5a4SJacob Faibussowitsch         SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Unhandled DMCopyLabelsMode %d", (int)emode);
75342cbb9b06SVaclav Hapla       }
75352cbb9b06SVaclav Hapla     }
75365d80c0bfSVaclav Hapla     if (mode == PETSC_COPY_VALUES) {
75379566063dSJacob Faibussowitsch       PetscCall(DMLabelDuplicate(label, &labelNew));
75385d80c0bfSVaclav Hapla     } else {
75395d80c0bfSVaclav Hapla       labelNew = label;
75405d80c0bfSVaclav Hapla     }
75419566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dmB, labelNew));
75429566063dSJacob Faibussowitsch     if (mode == PETSC_COPY_VALUES) PetscCall(DMLabelDestroy(&labelNew));
7543c58f1c22SToby Isaac   }
75443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7545c58f1c22SToby Isaac }
7546461a15a0SLisandro Dalcin 
7547609dae6eSVaclav Hapla /*@C
7548b4028c23SStefano Zampini   DMCompareLabels - Compare labels between two `DM` objects
7549609dae6eSVaclav Hapla 
755020f4b53cSBarry Smith   Collective; No Fortran Support
7551609dae6eSVaclav Hapla 
7552609dae6eSVaclav Hapla   Input Parameters:
7553bb7acecfSBarry Smith + dm0 - First `DM` object
7554bb7acecfSBarry Smith - dm1 - Second `DM` object
7555609dae6eSVaclav Hapla 
7556a4e35b19SJacob Faibussowitsch   Output Parameters:
75575efe38ccSVaclav Hapla + equal   - (Optional) Flag whether labels of dm0 and dm1 are the same
755820f4b53cSBarry Smith - message - (Optional) Message describing the difference, or `NULL` if there is no difference
7559609dae6eSVaclav Hapla 
7560609dae6eSVaclav Hapla   Level: intermediate
7561609dae6eSVaclav Hapla 
7562609dae6eSVaclav Hapla   Notes:
7563bb7acecfSBarry Smith   The output flag equal will be the same on all processes.
7564bb7acecfSBarry Smith 
756520f4b53cSBarry Smith   If equal is passed as `NULL` and difference is found, an error is thrown on all processes.
7566bb7acecfSBarry Smith 
756720f4b53cSBarry Smith   Make sure to pass equal is `NULL` on all processes or none of them.
7568609dae6eSVaclav Hapla 
75695efe38ccSVaclav Hapla   The output message is set independently on each rank.
7570bb7acecfSBarry Smith 
7571bb7acecfSBarry Smith   message must be freed with `PetscFree()`
7572bb7acecfSBarry Smith 
757320f4b53cSBarry Smith   If message is passed as `NULL` and a difference is found, the difference description is printed to stderr in synchronized manner.
7574bb7acecfSBarry Smith 
757520f4b53cSBarry Smith   Make sure to pass message as `NULL` on all processes or no processes.
7576609dae6eSVaclav Hapla 
7577609dae6eSVaclav Hapla   Labels are matched by name. If the number of labels and their names are equal,
7578bb7acecfSBarry Smith   `DMLabelCompare()` is used to compare each pair of labels with the same name.
7579609dae6eSVaclav Hapla 
7580cc4c1da9SBarry Smith   Developer Note:
7581cc4c1da9SBarry Smith   Can automatically generate the Fortran stub because `message` must be freed with `PetscFree()`
7582cc4c1da9SBarry Smith 
75831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`, `DMLabelCompare()`
7584609dae6eSVaclav Hapla @*/
7585d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompareLabels(DM dm0, DM dm1, PetscBool *equal, char **message)
7586d71ae5a4SJacob Faibussowitsch {
75875efe38ccSVaclav Hapla   PetscInt    n, i;
7588609dae6eSVaclav Hapla   char        msg[PETSC_MAX_PATH_LEN] = "";
75895efe38ccSVaclav Hapla   PetscBool   eq;
7590609dae6eSVaclav Hapla   MPI_Comm    comm;
75915efe38ccSVaclav Hapla   PetscMPIInt rank;
7592609dae6eSVaclav Hapla 
7593609dae6eSVaclav Hapla   PetscFunctionBegin;
7594609dae6eSVaclav Hapla   PetscValidHeaderSpecific(dm0, DM_CLASSID, 1);
7595609dae6eSVaclav Hapla   PetscValidHeaderSpecific(dm1, DM_CLASSID, 2);
7596609dae6eSVaclav Hapla   PetscCheckSameComm(dm0, 1, dm1, 2);
75974f572ea9SToby Isaac   if (equal) PetscAssertPointer(equal, 3);
75984f572ea9SToby Isaac   if (message) PetscAssertPointer(message, 4);
75999566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm0, &comm));
76009566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
76015efe38ccSVaclav Hapla   {
76025efe38ccSVaclav Hapla     PetscInt n1;
76035efe38ccSVaclav Hapla 
76049566063dSJacob Faibussowitsch     PetscCall(DMGetNumLabels(dm0, &n));
76059566063dSJacob Faibussowitsch     PetscCall(DMGetNumLabels(dm1, &n1));
76065efe38ccSVaclav Hapla     eq = (PetscBool)(n == n1);
760748a46eb9SPierre Jolivet     if (!eq) PetscCall(PetscSNPrintf(msg, sizeof(msg), "Number of labels in dm0 = %" PetscInt_FMT " != %" PetscInt_FMT " = Number of labels in dm1", n, n1));
7608462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm));
76095efe38ccSVaclav Hapla     if (!eq) goto finish;
76105efe38ccSVaclav Hapla   }
76115efe38ccSVaclav Hapla   for (i = 0; i < n; i++) {
7612609dae6eSVaclav Hapla     DMLabel     l0, l1;
7613609dae6eSVaclav Hapla     const char *name;
7614609dae6eSVaclav Hapla     char       *msgInner;
7615609dae6eSVaclav Hapla 
7616609dae6eSVaclav Hapla     /* Ignore label order */
76179566063dSJacob Faibussowitsch     PetscCall(DMGetLabelByNum(dm0, i, &l0));
76189566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)l0, &name));
76199566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm1, name, &l1));
7620609dae6eSVaclav Hapla     if (!l1) {
762163a3b9bcSJacob Faibussowitsch       PetscCall(PetscSNPrintf(msg, sizeof(msg), "Label \"%s\" (#%" PetscInt_FMT " in dm0) not found in dm1", name, i));
76225efe38ccSVaclav Hapla       eq = PETSC_FALSE;
76235efe38ccSVaclav Hapla       break;
7624609dae6eSVaclav Hapla     }
76259566063dSJacob Faibussowitsch     PetscCall(DMLabelCompare(comm, l0, l1, &eq, &msgInner));
76269566063dSJacob Faibussowitsch     PetscCall(PetscStrncpy(msg, msgInner, sizeof(msg)));
76279566063dSJacob Faibussowitsch     PetscCall(PetscFree(msgInner));
76285efe38ccSVaclav Hapla     if (!eq) break;
7629609dae6eSVaclav Hapla   }
7630462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm));
7631609dae6eSVaclav Hapla finish:
76325efe38ccSVaclav Hapla   /* If message output arg not set, print to stderr */
7633609dae6eSVaclav Hapla   if (message) {
7634609dae6eSVaclav Hapla     *message = NULL;
763548a46eb9SPierre Jolivet     if (msg[0]) PetscCall(PetscStrallocpy(msg, message));
76365efe38ccSVaclav Hapla   } else {
763748a46eb9SPierre Jolivet     if (msg[0]) PetscCall(PetscSynchronizedFPrintf(comm, PETSC_STDERR, "[%d] %s\n", rank, msg));
76389566063dSJacob Faibussowitsch     PetscCall(PetscSynchronizedFlush(comm, PETSC_STDERR));
76395efe38ccSVaclav Hapla   }
76405efe38ccSVaclav Hapla   /* If same output arg not ser and labels are not equal, throw error */
76415efe38ccSVaclav Hapla   if (equal) *equal = eq;
76427a8be351SBarry Smith   else PetscCheck(eq, comm, PETSC_ERR_ARG_INCOMP, "DMLabels are not the same in dm0 and dm1");
76433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7644609dae6eSVaclav Hapla }
7645609dae6eSVaclav Hapla 
7646d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue_Fast(DM dm, DMLabel *label, const char name[], PetscInt point, PetscInt value)
7647d71ae5a4SJacob Faibussowitsch {
7648461a15a0SLisandro Dalcin   PetscFunctionBegin;
76494f572ea9SToby Isaac   PetscAssertPointer(label, 2);
7650461a15a0SLisandro Dalcin   if (!*label) {
76519566063dSJacob Faibussowitsch     PetscCall(DMCreateLabel(dm, name));
76529566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, name, label));
7653461a15a0SLisandro Dalcin   }
76549566063dSJacob Faibussowitsch   PetscCall(DMLabelSetValue(*label, point, value));
76553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7656461a15a0SLisandro Dalcin }
7657461a15a0SLisandro Dalcin 
76580fdc7489SMatthew Knepley /*
76590fdc7489SMatthew Knepley   Many mesh programs, such as Triangle and TetGen, allow only a single label for each mesh point. Therefore, we would
76600fdc7489SMatthew Knepley   like to encode all label IDs using a single, universal label. We can do this by assigning an integer to every
76610fdc7489SMatthew Knepley   (label, id) pair in the DM.
76620fdc7489SMatthew Knepley 
76630fdc7489SMatthew Knepley   However, a mesh point can have multiple labels, so we must separate all these values. We will assign a bit range to
76640fdc7489SMatthew Knepley   each label.
76650fdc7489SMatthew Knepley */
7666d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreate(DM dm, DMUniversalLabel *universal)
7667d71ae5a4SJacob Faibussowitsch {
76680fdc7489SMatthew Knepley   DMUniversalLabel ul;
76690fdc7489SMatthew Knepley   PetscBool       *active;
76700fdc7489SMatthew Knepley   PetscInt         pStart, pEnd, p, Nl, l, m;
76710fdc7489SMatthew Knepley 
76720fdc7489SMatthew Knepley   PetscFunctionBegin;
76739566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(1, &ul));
76749566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "universal", &ul->label));
76759566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(dm, &Nl));
76769566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Nl, &active));
76770fdc7489SMatthew Knepley   ul->Nl = 0;
76780fdc7489SMatthew Knepley   for (l = 0; l < Nl; ++l) {
76790fdc7489SMatthew Knepley     PetscBool   isdepth, iscelltype;
76800fdc7489SMatthew Knepley     const char *name;
76810fdc7489SMatthew Knepley 
76829566063dSJacob Faibussowitsch     PetscCall(DMGetLabelName(dm, l, &name));
76839566063dSJacob Faibussowitsch     PetscCall(PetscStrncmp(name, "depth", 6, &isdepth));
76849566063dSJacob Faibussowitsch     PetscCall(PetscStrncmp(name, "celltype", 9, &iscelltype));
76850fdc7489SMatthew Knepley     active[l] = !(isdepth || iscelltype) ? PETSC_TRUE : PETSC_FALSE;
76860fdc7489SMatthew Knepley     if (active[l]) ++ul->Nl;
76870fdc7489SMatthew Knepley   }
76889566063dSJacob Faibussowitsch   PetscCall(PetscCalloc5(ul->Nl, &ul->names, ul->Nl, &ul->indices, ul->Nl + 1, &ul->offsets, ul->Nl + 1, &ul->bits, ul->Nl, &ul->masks));
76890fdc7489SMatthew Knepley   ul->Nv = 0;
76900fdc7489SMatthew Knepley   for (l = 0, m = 0; l < Nl; ++l) {
76910fdc7489SMatthew Knepley     DMLabel     label;
76920fdc7489SMatthew Knepley     PetscInt    nv;
76930fdc7489SMatthew Knepley     const char *name;
76940fdc7489SMatthew Knepley 
76950fdc7489SMatthew Knepley     if (!active[l]) continue;
76969566063dSJacob Faibussowitsch     PetscCall(DMGetLabelName(dm, l, &name));
76979566063dSJacob Faibussowitsch     PetscCall(DMGetLabelByNum(dm, l, &label));
76989566063dSJacob Faibussowitsch     PetscCall(DMLabelGetNumValues(label, &nv));
76999566063dSJacob Faibussowitsch     PetscCall(PetscStrallocpy(name, &ul->names[m]));
77000fdc7489SMatthew Knepley     ul->indices[m] = l;
77010fdc7489SMatthew Knepley     ul->Nv += nv;
77020fdc7489SMatthew Knepley     ul->offsets[m + 1] = nv;
77030fdc7489SMatthew Knepley     ul->bits[m + 1]    = PetscCeilReal(PetscLog2Real(nv + 1));
77040fdc7489SMatthew Knepley     ++m;
77050fdc7489SMatthew Knepley   }
77060fdc7489SMatthew Knepley   for (l = 1; l <= ul->Nl; ++l) {
77070fdc7489SMatthew Knepley     ul->offsets[l] = ul->offsets[l - 1] + ul->offsets[l];
77080fdc7489SMatthew Knepley     ul->bits[l]    = ul->bits[l - 1] + ul->bits[l];
77090fdc7489SMatthew Knepley   }
77100fdc7489SMatthew Knepley   for (l = 0; l < ul->Nl; ++l) {
77110fdc7489SMatthew Knepley     PetscInt b;
77120fdc7489SMatthew Knepley 
77130fdc7489SMatthew Knepley     ul->masks[l] = 0;
77140fdc7489SMatthew Knepley     for (b = ul->bits[l]; b < ul->bits[l + 1]; ++b) ul->masks[l] |= 1 << b;
77150fdc7489SMatthew Knepley   }
77169566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ul->Nv, &ul->values));
77170fdc7489SMatthew Knepley   for (l = 0, m = 0; l < Nl; ++l) {
77180fdc7489SMatthew Knepley     DMLabel         label;
77190fdc7489SMatthew Knepley     IS              valueIS;
77200fdc7489SMatthew Knepley     const PetscInt *varr;
77210fdc7489SMatthew Knepley     PetscInt        nv, v;
77220fdc7489SMatthew Knepley 
77230fdc7489SMatthew Knepley     if (!active[l]) continue;
77249566063dSJacob Faibussowitsch     PetscCall(DMGetLabelByNum(dm, l, &label));
77259566063dSJacob Faibussowitsch     PetscCall(DMLabelGetNumValues(label, &nv));
77269566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValueIS(label, &valueIS));
77279566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(valueIS, &varr));
7728ad540459SPierre Jolivet     for (v = 0; v < nv; ++v) ul->values[ul->offsets[m] + v] = varr[v];
77299566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(valueIS, &varr));
77309566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&valueIS));
77319566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(nv, &ul->values[ul->offsets[m]]));
77320fdc7489SMatthew Knepley     ++m;
77330fdc7489SMatthew Knepley   }
77349566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
77350fdc7489SMatthew Knepley   for (p = pStart; p < pEnd; ++p) {
77360fdc7489SMatthew Knepley     PetscInt  uval   = 0;
77370fdc7489SMatthew Knepley     PetscBool marked = PETSC_FALSE;
77380fdc7489SMatthew Knepley 
77390fdc7489SMatthew Knepley     for (l = 0, m = 0; l < Nl; ++l) {
77400fdc7489SMatthew Knepley       DMLabel  label;
77410649b39aSStefano Zampini       PetscInt val, defval, loc, nv;
77420fdc7489SMatthew Knepley 
77430fdc7489SMatthew Knepley       if (!active[l]) continue;
77449566063dSJacob Faibussowitsch       PetscCall(DMGetLabelByNum(dm, l, &label));
77459566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(label, p, &val));
77469566063dSJacob Faibussowitsch       PetscCall(DMLabelGetDefaultValue(label, &defval));
77479371c9d4SSatish Balay       if (val == defval) {
77489371c9d4SSatish Balay         ++m;
77499371c9d4SSatish Balay         continue;
77509371c9d4SSatish Balay       }
77510649b39aSStefano Zampini       nv     = ul->offsets[m + 1] - ul->offsets[m];
77520fdc7489SMatthew Knepley       marked = PETSC_TRUE;
77539566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(val, nv, &ul->values[ul->offsets[m]], &loc));
775463a3b9bcSJacob Faibussowitsch       PetscCheck(loc >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Label value %" PetscInt_FMT " not found in compression array", val);
77550fdc7489SMatthew Knepley       uval += (loc + 1) << ul->bits[m];
77560fdc7489SMatthew Knepley       ++m;
77570fdc7489SMatthew Knepley     }
77589566063dSJacob Faibussowitsch     if (marked) PetscCall(DMLabelSetValue(ul->label, p, uval));
77590fdc7489SMatthew Knepley   }
77609566063dSJacob Faibussowitsch   PetscCall(PetscFree(active));
77610fdc7489SMatthew Knepley   *universal = ul;
77623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
77630fdc7489SMatthew Knepley }
77640fdc7489SMatthew Knepley 
7765d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelDestroy(DMUniversalLabel *universal)
7766d71ae5a4SJacob Faibussowitsch {
77670fdc7489SMatthew Knepley   PetscInt l;
77680fdc7489SMatthew Knepley 
77690fdc7489SMatthew Knepley   PetscFunctionBegin;
77709566063dSJacob Faibussowitsch   for (l = 0; l < (*universal)->Nl; ++l) PetscCall(PetscFree((*universal)->names[l]));
77719566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&(*universal)->label));
77729566063dSJacob Faibussowitsch   PetscCall(PetscFree5((*universal)->names, (*universal)->indices, (*universal)->offsets, (*universal)->bits, (*universal)->masks));
77739566063dSJacob Faibussowitsch   PetscCall(PetscFree((*universal)->values));
77749566063dSJacob Faibussowitsch   PetscCall(PetscFree(*universal));
77750fdc7489SMatthew Knepley   *universal = NULL;
77763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
77770fdc7489SMatthew Knepley }
77780fdc7489SMatthew Knepley 
7779d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelGetLabel(DMUniversalLabel ul, DMLabel *ulabel)
7780d71ae5a4SJacob Faibussowitsch {
77810fdc7489SMatthew Knepley   PetscFunctionBegin;
77824f572ea9SToby Isaac   PetscAssertPointer(ulabel, 2);
77830fdc7489SMatthew Knepley   *ulabel = ul->label;
77843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
77850fdc7489SMatthew Knepley }
77860fdc7489SMatthew Knepley 
7787d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreateLabels(DMUniversalLabel ul, PetscBool preserveOrder, DM dm)
7788d71ae5a4SJacob Faibussowitsch {
77890fdc7489SMatthew Knepley   PetscInt Nl = ul->Nl, l;
77900fdc7489SMatthew Knepley 
77910fdc7489SMatthew Knepley   PetscFunctionBegin;
7792064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(dm, DM_CLASSID, 3);
77930fdc7489SMatthew Knepley   for (l = 0; l < Nl; ++l) {
77949566063dSJacob Faibussowitsch     if (preserveOrder) PetscCall(DMCreateLabelAtIndex(dm, ul->indices[l], ul->names[l]));
77959566063dSJacob Faibussowitsch     else PetscCall(DMCreateLabel(dm, ul->names[l]));
77960fdc7489SMatthew Knepley   }
77970fdc7489SMatthew Knepley   if (preserveOrder) {
77980fdc7489SMatthew Knepley     for (l = 0; l < ul->Nl; ++l) {
77990fdc7489SMatthew Knepley       const char *name;
78000fdc7489SMatthew Knepley       PetscBool   match;
78010fdc7489SMatthew Knepley 
78029566063dSJacob Faibussowitsch       PetscCall(DMGetLabelName(dm, ul->indices[l], &name));
78039566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, ul->names[l], &match));
780463a3b9bcSJacob Faibussowitsch       PetscCheck(match, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Label %" PetscInt_FMT " name %s does not match new name %s", l, name, ul->names[l]);
78050fdc7489SMatthew Knepley     }
78060fdc7489SMatthew Knepley   }
78073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
78080fdc7489SMatthew Knepley }
78090fdc7489SMatthew Knepley 
7810d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelSetLabelValue(DMUniversalLabel ul, DM dm, PetscBool useIndex, PetscInt p, PetscInt value)
7811d71ae5a4SJacob Faibussowitsch {
78120fdc7489SMatthew Knepley   PetscInt l;
78130fdc7489SMatthew Knepley 
78140fdc7489SMatthew Knepley   PetscFunctionBegin;
78150fdc7489SMatthew Knepley   for (l = 0; l < ul->Nl; ++l) {
78160fdc7489SMatthew Knepley     DMLabel  label;
78170fdc7489SMatthew Knepley     PetscInt lval = (value & ul->masks[l]) >> ul->bits[l];
78180fdc7489SMatthew Knepley 
78190fdc7489SMatthew Knepley     if (lval) {
78209566063dSJacob Faibussowitsch       if (useIndex) PetscCall(DMGetLabelByNum(dm, ul->indices[l], &label));
78219566063dSJacob Faibussowitsch       else PetscCall(DMGetLabel(dm, ul->names[l], &label));
78229566063dSJacob Faibussowitsch       PetscCall(DMLabelSetValue(label, p, ul->values[ul->offsets[l] + lval - 1]));
78230fdc7489SMatthew Knepley     }
78240fdc7489SMatthew Knepley   }
78253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
78260fdc7489SMatthew Knepley }
7827a8fb8f29SToby Isaac 
7828a8fb8f29SToby Isaac /*@
7829bb7acecfSBarry Smith   DMGetCoarseDM - Get the coarse `DM`from which this `DM` was obtained by refinement
7830bb7acecfSBarry Smith 
783120f4b53cSBarry Smith   Not Collective
7832a8fb8f29SToby Isaac 
7833a8fb8f29SToby Isaac   Input Parameter:
7834bb7acecfSBarry Smith . dm - The `DM` object
7835a8fb8f29SToby Isaac 
7836a8fb8f29SToby Isaac   Output Parameter:
7837bb7acecfSBarry Smith . cdm - The coarse `DM`
7838a8fb8f29SToby Isaac 
7839a8fb8f29SToby Isaac   Level: intermediate
7840a8fb8f29SToby Isaac 
78411cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetCoarseDM()`, `DMCoarsen()`
7842a8fb8f29SToby Isaac @*/
7843d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarseDM(DM dm, DM *cdm)
7844d71ae5a4SJacob Faibussowitsch {
7845a8fb8f29SToby Isaac   PetscFunctionBegin;
7846a8fb8f29SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
78474f572ea9SToby Isaac   PetscAssertPointer(cdm, 2);
7848a8fb8f29SToby Isaac   *cdm = dm->coarseMesh;
78493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7850a8fb8f29SToby Isaac }
7851a8fb8f29SToby Isaac 
7852a8fb8f29SToby Isaac /*@
7853bb7acecfSBarry Smith   DMSetCoarseDM - Set the coarse `DM` from which this `DM` was obtained by refinement
7854a8fb8f29SToby Isaac 
7855a8fb8f29SToby Isaac   Input Parameters:
7856bb7acecfSBarry Smith + dm  - The `DM` object
7857bb7acecfSBarry Smith - cdm - The coarse `DM`
7858a8fb8f29SToby Isaac 
7859a8fb8f29SToby Isaac   Level: intermediate
7860a8fb8f29SToby Isaac 
7861bb7acecfSBarry Smith   Note:
7862bb7acecfSBarry Smith   Normally this is set automatically by `DMRefine()`
7863bb7acecfSBarry Smith 
78641cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCoarseDM()`, `DMCoarsen()`, `DMSetRefine()`, `DMSetFineDM()`
7865a8fb8f29SToby Isaac @*/
7866d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarseDM(DM dm, DM cdm)
7867d71ae5a4SJacob Faibussowitsch {
7868a8fb8f29SToby Isaac   PetscFunctionBegin;
7869a8fb8f29SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7870a8fb8f29SToby Isaac   if (cdm) PetscValidHeaderSpecific(cdm, DM_CLASSID, 2);
787189d734beSBarry Smith   if (dm == cdm) cdm = NULL;
78729566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)cdm));
78739566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dm->coarseMesh));
7874a8fb8f29SToby Isaac   dm->coarseMesh = cdm;
78753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7876a8fb8f29SToby Isaac }
7877a8fb8f29SToby Isaac 
787888bdff64SToby Isaac /*@
7879bb7acecfSBarry Smith   DMGetFineDM - Get the fine mesh from which this `DM` was obtained by coarsening
788088bdff64SToby Isaac 
788188bdff64SToby Isaac   Input Parameter:
7882bb7acecfSBarry Smith . dm - The `DM` object
788388bdff64SToby Isaac 
788488bdff64SToby Isaac   Output Parameter:
7885bb7acecfSBarry Smith . fdm - The fine `DM`
788688bdff64SToby Isaac 
788788bdff64SToby Isaac   Level: intermediate
788888bdff64SToby Isaac 
78891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetFineDM()`, `DMCoarsen()`, `DMRefine()`
789088bdff64SToby Isaac @*/
7891d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFineDM(DM dm, DM *fdm)
7892d71ae5a4SJacob Faibussowitsch {
789388bdff64SToby Isaac   PetscFunctionBegin;
789488bdff64SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
78954f572ea9SToby Isaac   PetscAssertPointer(fdm, 2);
789688bdff64SToby Isaac   *fdm = dm->fineMesh;
78973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
789888bdff64SToby Isaac }
789988bdff64SToby Isaac 
790088bdff64SToby Isaac /*@
7901bb7acecfSBarry Smith   DMSetFineDM - Set the fine mesh from which this was obtained by coarsening
790288bdff64SToby Isaac 
790388bdff64SToby Isaac   Input Parameters:
7904bb7acecfSBarry Smith + dm  - The `DM` object
7905bb7acecfSBarry Smith - fdm - The fine `DM`
790688bdff64SToby Isaac 
7907bb7acecfSBarry Smith   Level: developer
790888bdff64SToby Isaac 
7909bb7acecfSBarry Smith   Note:
7910bb7acecfSBarry Smith   Normally this is set automatically by `DMCoarsen()`
7911bb7acecfSBarry Smith 
79121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFineDM()`, `DMCoarsen()`, `DMRefine()`
791388bdff64SToby Isaac @*/
7914d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFineDM(DM dm, DM fdm)
7915d71ae5a4SJacob Faibussowitsch {
791688bdff64SToby Isaac   PetscFunctionBegin;
791788bdff64SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
791888bdff64SToby Isaac   if (fdm) PetscValidHeaderSpecific(fdm, DM_CLASSID, 2);
791989d734beSBarry Smith   if (dm == fdm) fdm = NULL;
79209566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)fdm));
79219566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dm->fineMesh));
792288bdff64SToby Isaac   dm->fineMesh = fdm;
79233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
792488bdff64SToby Isaac }
792588bdff64SToby Isaac 
7926a6ba4734SToby Isaac /*@C
7927bb7acecfSBarry Smith   DMAddBoundary - Add a boundary condition to a model represented by a `DM`
7928a6ba4734SToby Isaac 
792920f4b53cSBarry Smith   Collective
7930783e2ec8SMatthew G. Knepley 
7931a6ba4734SToby Isaac   Input Parameters:
7932bb7acecfSBarry Smith + dm       - The `DM`, with a `PetscDS` that matches the problem being constrained
7933bb7acecfSBarry Smith . type     - The type of condition, e.g. `DM_BC_ESSENTIAL_ANALYTIC`, `DM_BC_ESSENTIAL_FIELD` (Dirichlet), or `DM_BC_NATURAL` (Neumann)
7934a6ba4734SToby Isaac . name     - The BC name
793545480ffeSMatthew G. Knepley . label    - The label defining constrained points
7936bb7acecfSBarry Smith . Nv       - The number of `DMLabel` values for constrained points
793745480ffeSMatthew G. Knepley . values   - An array of values for constrained points
7938a6ba4734SToby Isaac . field    - The field to constrain
793945480ffeSMatthew G. Knepley . Nc       - The number of constrained field components (0 will constrain all fields)
7940a6ba4734SToby Isaac . comps    - An array of constrained component numbers
7941a6ba4734SToby Isaac . bcFunc   - A pointwise function giving boundary values
794256cf3b9cSMatthew G. Knepley . bcFunc_t - A pointwise function giving the time deriative of the boundary values, or NULL
7943a6ba4734SToby Isaac - ctx      - An optional user context for bcFunc
7944a6ba4734SToby Isaac 
794545480ffeSMatthew G. Knepley   Output Parameter:
794645480ffeSMatthew G. Knepley . bd - (Optional) Boundary number
794745480ffeSMatthew G. Knepley 
7948a6ba4734SToby Isaac   Options Database Keys:
7949a6ba4734SToby Isaac + -bc_<boundary name> <num>      - Overrides the boundary ids
7950a6ba4734SToby Isaac - -bc_<boundary name>_comp <num> - Overrides the boundary components
7951a6ba4734SToby Isaac 
795220f4b53cSBarry Smith   Level: intermediate
795320f4b53cSBarry Smith 
7954bb7acecfSBarry Smith   Notes:
7955aeebefc2SPierre Jolivet   Both bcFunc and bcFunc_t will depend on the boundary condition type. If the type if `DM_BC_ESSENTIAL`, then the calling sequence is\:
795673ff1848SBarry Smith .vb
795773ff1848SBarry Smith  void bcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[])
795873ff1848SBarry Smith .ve
795956cf3b9cSMatthew G. Knepley 
7960a4e35b19SJacob Faibussowitsch   If the type is `DM_BC_ESSENTIAL_FIELD` or other _FIELD value, then the calling sequence is\:
796156cf3b9cSMatthew G. Knepley 
796220f4b53cSBarry Smith .vb
796320f4b53cSBarry Smith   void bcFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux,
796420f4b53cSBarry Smith               const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
796520f4b53cSBarry Smith               const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
796620f4b53cSBarry Smith               PetscReal time, const PetscReal x[], PetscScalar bcval[])
796720f4b53cSBarry Smith .ve
796856cf3b9cSMatthew G. Knepley + dim - the spatial dimension
796956cf3b9cSMatthew G. Knepley . Nf - the number of fields
797056cf3b9cSMatthew G. Knepley . uOff - the offset into u[] and u_t[] for each field
797156cf3b9cSMatthew G. Knepley . uOff_x - the offset into u_x[] for each field
797256cf3b9cSMatthew G. Knepley . u - each field evaluated at the current point
797356cf3b9cSMatthew G. Knepley . u_t - the time derivative of each field evaluated at the current point
797456cf3b9cSMatthew G. Knepley . u_x - the gradient of each field evaluated at the current point
797556cf3b9cSMatthew G. Knepley . aOff - the offset into a[] and a_t[] for each auxiliary field
797656cf3b9cSMatthew G. Knepley . aOff_x - the offset into a_x[] for each auxiliary field
797756cf3b9cSMatthew G. Knepley . a - each auxiliary field evaluated at the current point
797856cf3b9cSMatthew G. Knepley . a_t - the time derivative of each auxiliary field evaluated at the current point
797956cf3b9cSMatthew G. Knepley . a_x - the gradient of auxiliary each field evaluated at the current point
798056cf3b9cSMatthew G. Knepley . t - current time
798156cf3b9cSMatthew G. Knepley . x - coordinates of the current point
798256cf3b9cSMatthew G. Knepley . numConstants - number of constant parameters
798356cf3b9cSMatthew G. Knepley . constants - constant parameters
798456cf3b9cSMatthew G. Knepley - bcval - output values at the current point
798556cf3b9cSMatthew G. Knepley 
79861cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DSGetBoundary()`, `PetscDSAddBoundary()`
7987a6ba4734SToby Isaac @*/
7988d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddBoundary(DM dm, DMBoundaryConditionType type, const char name[], DMLabel label, PetscInt Nv, const PetscInt values[], PetscInt field, PetscInt Nc, const PetscInt comps[], void (*bcFunc)(void), void (*bcFunc_t)(void), void *ctx, PetscInt *bd)
7989d71ae5a4SJacob Faibussowitsch {
7990e5e52638SMatthew G. Knepley   PetscDS ds;
7991a6ba4734SToby Isaac 
7992a6ba4734SToby Isaac   PetscFunctionBegin;
7993a6ba4734SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7994783e2ec8SMatthew G. Knepley   PetscValidLogicalCollectiveEnum(dm, type, 2);
799545480ffeSMatthew G. Knepley   PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 4);
799645480ffeSMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, Nv, 5);
799745480ffeSMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, field, 7);
799845480ffeSMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, Nc, 8);
799901a5d20dSJed Brown   PetscCheck(!dm->localSection, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot add boundary to DM after creating local section");
80009566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &ds));
8001799db056SMatthew G. Knepley   /* Complete label */
8002799db056SMatthew G. Knepley   if (label) {
8003799db056SMatthew G. Knepley     PetscObject  obj;
8004799db056SMatthew G. Knepley     PetscClassId id;
8005799db056SMatthew G. Knepley 
8006799db056SMatthew G. Knepley     PetscCall(DMGetField(dm, field, NULL, &obj));
8007799db056SMatthew G. Knepley     PetscCall(PetscObjectGetClassId(obj, &id));
8008799db056SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
8009799db056SMatthew G. Knepley       DM plex;
8010799db056SMatthew G. Knepley 
8011799db056SMatthew G. Knepley       PetscCall(DMConvert(dm, DMPLEX, &plex));
8012799db056SMatthew G. Knepley       if (plex) PetscCall(DMPlexLabelComplete(plex, label));
8013799db056SMatthew G. Knepley       PetscCall(DMDestroy(&plex));
8014799db056SMatthew G. Knepley     }
8015799db056SMatthew G. Knepley   }
80169566063dSJacob Faibussowitsch   PetscCall(PetscDSAddBoundary(ds, type, name, label, Nv, values, field, Nc, comps, bcFunc, bcFunc_t, ctx, bd));
80173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8018a6ba4734SToby Isaac }
8019a6ba4734SToby Isaac 
802045480ffeSMatthew G. Knepley /* TODO Remove this since now the structures are the same */
8021d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPopulateBoundary(DM dm)
8022d71ae5a4SJacob Faibussowitsch {
8023e5e52638SMatthew G. Knepley   PetscDS     ds;
8024dff059c6SToby Isaac   DMBoundary *lastnext;
8025e6f8dbb6SToby Isaac   DSBoundary  dsbound;
8026e6f8dbb6SToby Isaac 
8027e6f8dbb6SToby Isaac   PetscFunctionBegin;
80289566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &ds));
8029e5e52638SMatthew G. Knepley   dsbound = ds->boundary;
803047a1f5adSToby Isaac   if (dm->boundary) {
803147a1f5adSToby Isaac     DMBoundary next = dm->boundary;
803247a1f5adSToby Isaac 
803347a1f5adSToby Isaac     /* quick check to see if the PetscDS has changed */
80343ba16761SJacob Faibussowitsch     if (next->dsboundary == dsbound) PetscFunctionReturn(PETSC_SUCCESS);
803547a1f5adSToby Isaac     /* the PetscDS has changed: tear down and rebuild */
803647a1f5adSToby Isaac     while (next) {
803747a1f5adSToby Isaac       DMBoundary b = next;
803847a1f5adSToby Isaac 
803947a1f5adSToby Isaac       next = b->next;
80409566063dSJacob Faibussowitsch       PetscCall(PetscFree(b));
8041a6ba4734SToby Isaac     }
804247a1f5adSToby Isaac     dm->boundary = NULL;
8043a6ba4734SToby Isaac   }
804447a1f5adSToby Isaac 
8045f4f49eeaSPierre Jolivet   lastnext = &dm->boundary;
8046e6f8dbb6SToby Isaac   while (dsbound) {
8047e6f8dbb6SToby Isaac     DMBoundary dmbound;
8048e6f8dbb6SToby Isaac 
80499566063dSJacob Faibussowitsch     PetscCall(PetscNew(&dmbound));
8050e6f8dbb6SToby Isaac     dmbound->dsboundary = dsbound;
805145480ffeSMatthew G. Knepley     dmbound->label      = dsbound->label;
805247a1f5adSToby Isaac     /* push on the back instead of the front so that it is in the same order as in the PetscDS */
8053dff059c6SToby Isaac     *lastnext = dmbound;
8054f4f49eeaSPierre Jolivet     lastnext  = &dmbound->next;
8055dff059c6SToby Isaac     dsbound   = dsbound->next;
8056a6ba4734SToby Isaac   }
80573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8058a6ba4734SToby Isaac }
8059a6ba4734SToby Isaac 
8060bb7acecfSBarry Smith /* TODO: missing manual page */
8061d71ae5a4SJacob Faibussowitsch PetscErrorCode DMIsBoundaryPoint(DM dm, PetscInt point, PetscBool *isBd)
8062d71ae5a4SJacob Faibussowitsch {
8063b95f2879SToby Isaac   DMBoundary b;
8064a6ba4734SToby Isaac 
8065a6ba4734SToby Isaac   PetscFunctionBegin;
8066a6ba4734SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
80674f572ea9SToby Isaac   PetscAssertPointer(isBd, 3);
8068a6ba4734SToby Isaac   *isBd = PETSC_FALSE;
80699566063dSJacob Faibussowitsch   PetscCall(DMPopulateBoundary(dm));
8070b95f2879SToby Isaac   b = dm->boundary;
807157508eceSPierre Jolivet   while (b && !*isBd) {
8072e6f8dbb6SToby Isaac     DMLabel    label = b->label;
8073e6f8dbb6SToby Isaac     DSBoundary dsb   = b->dsboundary;
8074a6ba4734SToby Isaac     PetscInt   i;
8075a6ba4734SToby Isaac 
807645480ffeSMatthew G. Knepley     if (label) {
807757508eceSPierre Jolivet       for (i = 0; i < dsb->Nv && !*isBd; ++i) PetscCall(DMLabelStratumHasPoint(label, dsb->values[i], point, isBd));
8078a6ba4734SToby Isaac     }
8079a6ba4734SToby Isaac     b = b->next;
8080a6ba4734SToby Isaac   }
80813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8082a6ba4734SToby Isaac }
80834d6f44ffSToby Isaac 
80844d6f44ffSToby Isaac /*@C
8085bb7acecfSBarry Smith   DMProjectFunction - This projects the given function into the function space provided by a `DM`, putting the coefficients in a global vector.
8086a6e0b375SMatthew G. Knepley 
808720f4b53cSBarry Smith   Collective
80884d6f44ffSToby Isaac 
80894d6f44ffSToby Isaac   Input Parameters:
8090bb7acecfSBarry Smith + dm    - The `DM`
80910709b2feSToby Isaac . time  - The time
80924d6f44ffSToby Isaac . funcs - The coordinate functions to evaluate, one per field
80934d6f44ffSToby Isaac . ctxs  - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
80944d6f44ffSToby Isaac - mode  - The insertion mode for values
80954d6f44ffSToby Isaac 
80964d6f44ffSToby Isaac   Output Parameter:
80974d6f44ffSToby Isaac . X - vector
80984d6f44ffSToby Isaac 
809920f4b53cSBarry Smith   Calling sequence of `funcs`:
81004d6f44ffSToby Isaac + dim  - The spatial dimension
81018ec8862eSJed Brown . time - The time at which to sample
81024d6f44ffSToby Isaac . x    - The coordinates
810377b739a6SMatthew Knepley . Nc   - The number of components
81044d6f44ffSToby Isaac . u    - The output field values
81054d6f44ffSToby Isaac - ctx  - optional user-defined function context
81064d6f44ffSToby Isaac 
81074d6f44ffSToby Isaac   Level: developer
81084d6f44ffSToby Isaac 
8109bb7acecfSBarry Smith   Developer Notes:
8110bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8111bb7acecfSBarry Smith 
8112bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8113bb7acecfSBarry Smith 
81141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
81154d6f44ffSToby Isaac @*/
8116a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunction(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X)
8117d71ae5a4SJacob Faibussowitsch {
81184d6f44ffSToby Isaac   Vec localX;
81194d6f44ffSToby Isaac 
81204d6f44ffSToby Isaac   PetscFunctionBegin;
81214d6f44ffSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8122708be2fdSJed Brown   PetscCall(PetscLogEventBegin(DM_ProjectFunction, dm, X, 0, 0));
81239566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
8124f60fa741SMatthew G. Knepley   PetscCall(VecSet(localX, 0.));
81259566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, mode, localX));
81269566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
81279566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
81289566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
8129708be2fdSJed Brown   PetscCall(PetscLogEventEnd(DM_ProjectFunction, dm, X, 0, 0));
81303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
81314d6f44ffSToby Isaac }
81324d6f44ffSToby Isaac 
8133a6e0b375SMatthew G. Knepley /*@C
8134bb7acecfSBarry Smith   DMProjectFunctionLocal - This projects the given function into the function space provided by a `DM`, putting the coefficients in a local vector.
8135a6e0b375SMatthew G. Knepley 
813620f4b53cSBarry Smith   Not Collective
8137a6e0b375SMatthew G. Knepley 
8138a6e0b375SMatthew G. Knepley   Input Parameters:
8139bb7acecfSBarry Smith + dm    - The `DM`
8140a6e0b375SMatthew G. Knepley . time  - The time
8141a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field
8142a6e0b375SMatthew G. Knepley . ctxs  - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
8143a6e0b375SMatthew G. Knepley - mode  - The insertion mode for values
8144a6e0b375SMatthew G. Knepley 
8145a6e0b375SMatthew G. Knepley   Output Parameter:
8146a6e0b375SMatthew G. Knepley . localX - vector
8147a6e0b375SMatthew G. Knepley 
814820f4b53cSBarry Smith   Calling sequence of `funcs`:
8149a6e0b375SMatthew G. Knepley + dim  - The spatial dimension
8150a4e35b19SJacob Faibussowitsch . time - The current timestep
8151a6e0b375SMatthew G. Knepley . x    - The coordinates
815277b739a6SMatthew Knepley . Nc   - The number of components
8153a6e0b375SMatthew G. Knepley . u    - The output field values
8154a6e0b375SMatthew G. Knepley - ctx  - optional user-defined function context
8155a6e0b375SMatthew G. Knepley 
8156a6e0b375SMatthew G. Knepley   Level: developer
8157a6e0b375SMatthew G. Knepley 
8158bb7acecfSBarry Smith   Developer Notes:
8159bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8160bb7acecfSBarry Smith 
8161bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8162bb7acecfSBarry Smith 
81631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
8164a6e0b375SMatthew G. Knepley @*/
8165a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX)
8166d71ae5a4SJacob Faibussowitsch {
81674d6f44ffSToby Isaac   PetscFunctionBegin;
81684d6f44ffSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8169064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 6);
8170fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectfunctionlocal, time, funcs, ctxs, mode, localX);
81713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
81724d6f44ffSToby Isaac }
81734d6f44ffSToby Isaac 
8174a6e0b375SMatthew G. Knepley /*@C
8175bb7acecfSBarry Smith   DMProjectFunctionLabel - This projects the given function into the function space provided by the `DM`, putting the coefficients in a global vector, setting values only for points in the given label.
8176a6e0b375SMatthew G. Knepley 
817720f4b53cSBarry Smith   Collective
8178a6e0b375SMatthew G. Knepley 
8179a6e0b375SMatthew G. Knepley   Input Parameters:
8180bb7acecfSBarry Smith + dm     - The `DM`
8181a6e0b375SMatthew G. Knepley . time   - The time
8182a4e35b19SJacob Faibussowitsch . numIds - The number of ids
8183a4e35b19SJacob Faibussowitsch . ids    - The ids
8184a4e35b19SJacob Faibussowitsch . Nc     - The number of components
8185a4e35b19SJacob Faibussowitsch . comps  - The components
8186bb7acecfSBarry Smith . label  - The `DMLabel` selecting the portion of the mesh for projection
8187a6e0b375SMatthew G. Knepley . funcs  - The coordinate functions to evaluate, one per field
8188bb7acecfSBarry Smith . ctxs   - Optional array of contexts to pass to each coordinate function.  ctxs may be null.
8189a6e0b375SMatthew G. Knepley - mode   - The insertion mode for values
8190a6e0b375SMatthew G. Knepley 
8191a6e0b375SMatthew G. Knepley   Output Parameter:
8192a6e0b375SMatthew G. Knepley . X - vector
8193a6e0b375SMatthew G. Knepley 
819420f4b53cSBarry Smith   Calling sequence of `funcs`:
8195a6e0b375SMatthew G. Knepley + dim  - The spatial dimension
8196a4e35b19SJacob Faibussowitsch . time - The current timestep
8197a6e0b375SMatthew G. Knepley . x    - The coordinates
819877b739a6SMatthew Knepley . Nc   - The number of components
8199a6e0b375SMatthew G. Knepley . u    - The output field values
8200a6e0b375SMatthew G. Knepley - ctx  - optional user-defined function context
8201a6e0b375SMatthew G. Knepley 
8202a6e0b375SMatthew G. Knepley   Level: developer
8203a6e0b375SMatthew G. Knepley 
8204bb7acecfSBarry Smith   Developer Notes:
8205bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8206bb7acecfSBarry Smith 
8207bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8208bb7acecfSBarry Smith 
82091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`, `DMComputeL2Diff()`
8210a6e0b375SMatthew G. Knepley @*/
8211a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X)
8212d71ae5a4SJacob Faibussowitsch {
82132c53366bSMatthew G. Knepley   Vec localX;
82142c53366bSMatthew G. Knepley 
82152c53366bSMatthew G. Knepley   PetscFunctionBegin;
82162c53366bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
82179566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
8218f60fa741SMatthew G. Knepley   PetscCall(VecSet(localX, 0.));
82199566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX));
82209566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
82219566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
82229566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
82233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
82242c53366bSMatthew G. Knepley }
82252c53366bSMatthew G. Knepley 
8226a6e0b375SMatthew G. Knepley /*@C
8227bb7acecfSBarry Smith   DMProjectFunctionLabelLocal - This projects the given function into the function space provided by the `DM`, putting the coefficients in a local vector, setting values only for points in the given label.
8228a6e0b375SMatthew G. Knepley 
822920f4b53cSBarry Smith   Not Collective
8230a6e0b375SMatthew G. Knepley 
8231a6e0b375SMatthew G. Knepley   Input Parameters:
8232bb7acecfSBarry Smith + dm     - The `DM`
8233a6e0b375SMatthew G. Knepley . time   - The time
8234bb7acecfSBarry Smith . label  - The `DMLabel` selecting the portion of the mesh for projection
8235a4e35b19SJacob Faibussowitsch . numIds - The number of ids
8236a4e35b19SJacob Faibussowitsch . ids    - The ids
8237a4e35b19SJacob Faibussowitsch . Nc     - The number of components
8238a4e35b19SJacob Faibussowitsch . comps  - The components
8239a6e0b375SMatthew G. Knepley . funcs  - The coordinate functions to evaluate, one per field
8240a6e0b375SMatthew G. Knepley . ctxs   - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
8241a6e0b375SMatthew G. Knepley - mode   - The insertion mode for values
8242a6e0b375SMatthew G. Knepley 
8243a6e0b375SMatthew G. Knepley   Output Parameter:
8244a6e0b375SMatthew G. Knepley . localX - vector
8245a6e0b375SMatthew G. Knepley 
824620f4b53cSBarry Smith   Calling sequence of `funcs`:
8247a6e0b375SMatthew G. Knepley + dim  - The spatial dimension
8248a4e35b19SJacob Faibussowitsch . time - The current time
8249a6e0b375SMatthew G. Knepley . x    - The coordinates
825077b739a6SMatthew Knepley . Nc   - The number of components
8251a6e0b375SMatthew G. Knepley . u    - The output field values
8252a6e0b375SMatthew G. Knepley - ctx  - optional user-defined function context
8253a6e0b375SMatthew G. Knepley 
8254a6e0b375SMatthew G. Knepley   Level: developer
8255a6e0b375SMatthew G. Knepley 
8256bb7acecfSBarry Smith   Developer Notes:
8257bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8258bb7acecfSBarry Smith 
8259bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8260bb7acecfSBarry Smith 
82611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
8262a6e0b375SMatthew G. Knepley @*/
8263a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX)
8264d71ae5a4SJacob Faibussowitsch {
82654d6f44ffSToby Isaac   PetscFunctionBegin;
82664d6f44ffSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8267064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
8268fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectfunctionlabellocal, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX);
82693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
82704d6f44ffSToby Isaac }
82712716604bSToby Isaac 
8272a6e0b375SMatthew G. Knepley /*@C
8273bb7acecfSBarry Smith   DMProjectFieldLocal - This projects the given function of the input fields into the function space provided by the `DM`, putting the coefficients in a local vector.
8274a6e0b375SMatthew G. Knepley 
827520f4b53cSBarry Smith   Not Collective
8276a6e0b375SMatthew G. Knepley 
8277a6e0b375SMatthew G. Knepley   Input Parameters:
8278bb7acecfSBarry Smith + dm     - The `DM`
8279a6e0b375SMatthew G. Knepley . time   - The time
828020f4b53cSBarry Smith . localU - The input field vector; may be `NULL` if projection is defined purely by coordinates
8281a6e0b375SMatthew G. Knepley . funcs  - The functions to evaluate, one per field
8282a6e0b375SMatthew G. Knepley - mode   - The insertion mode for values
8283a6e0b375SMatthew G. Knepley 
8284a6e0b375SMatthew G. Knepley   Output Parameter:
8285a6e0b375SMatthew G. Knepley . localX - The output vector
8286a6e0b375SMatthew G. Knepley 
828720f4b53cSBarry Smith   Calling sequence of `funcs`:
8288a6e0b375SMatthew G. Knepley + dim          - The spatial dimension
8289a6e0b375SMatthew G. Knepley . Nf           - The number of input fields
8290a6e0b375SMatthew G. Knepley . NfAux        - The number of input auxiliary fields
8291a6e0b375SMatthew G. Knepley . uOff         - The offset of each field in u[]
8292a6e0b375SMatthew G. Knepley . uOff_x       - The offset of each field in u_x[]
8293a6e0b375SMatthew G. Knepley . u            - The field values at this point in space
8294a6e0b375SMatthew G. Knepley . u_t          - The field time derivative at this point in space (or NULL)
8295a6e0b375SMatthew G. Knepley . u_x          - The field derivatives at this point in space
8296a6e0b375SMatthew G. Knepley . aOff         - The offset of each auxiliary field in u[]
8297a6e0b375SMatthew G. Knepley . aOff_x       - The offset of each auxiliary field in u_x[]
8298a6e0b375SMatthew G. Knepley . a            - The auxiliary field values at this point in space
8299a6e0b375SMatthew G. Knepley . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8300a6e0b375SMatthew G. Knepley . a_x          - The auxiliary field derivatives at this point in space
8301a6e0b375SMatthew G. Knepley . t            - The current time
8302a6e0b375SMatthew G. Knepley . x            - The coordinates of this point
8303a6e0b375SMatthew G. Knepley . numConstants - The number of constants
8304a6e0b375SMatthew G. Knepley . constants    - The value of each constant
8305a6e0b375SMatthew G. Knepley - f            - The value of the function at this point in space
8306a6e0b375SMatthew G. Knepley 
830773ff1848SBarry Smith   Level: intermediate
830873ff1848SBarry Smith 
8309bb7acecfSBarry Smith   Note:
8310bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8311bb7acecfSBarry Smith   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8312bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8313a6e0b375SMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8314a6e0b375SMatthew G. Knepley 
8315bb7acecfSBarry Smith   Developer Notes:
8316bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8317bb7acecfSBarry Smith 
8318bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8319bb7acecfSBarry Smith 
8320a4e35b19SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`,
8321a4e35b19SJacob Faibussowitsch `DMProjectFunction()`, `DMComputeL2Diff()`
8322a6e0b375SMatthew G. Knepley @*/
8323a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLocal(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX)
8324d71ae5a4SJacob Faibussowitsch {
83258c6c5593SMatthew G. Knepley   PetscFunctionBegin;
83268c6c5593SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8327eb8f539aSJed Brown   if (localU) PetscValidHeaderSpecific(localU, VEC_CLASSID, 3);
83288c6c5593SMatthew G. Knepley   PetscValidHeaderSpecific(localX, VEC_CLASSID, 6);
8329fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectfieldlocal, time, localU, funcs, mode, localX);
83303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
83318c6c5593SMatthew G. Knepley }
83328c6c5593SMatthew G. Knepley 
8333a6e0b375SMatthew G. Knepley /*@C
8334a6e0b375SMatthew G. Knepley   DMProjectFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain specified by the label.
8335a6e0b375SMatthew G. Knepley 
833620f4b53cSBarry Smith   Not Collective
8337a6e0b375SMatthew G. Knepley 
8338a6e0b375SMatthew G. Knepley   Input Parameters:
8339bb7acecfSBarry Smith + dm     - The `DM`
8340a6e0b375SMatthew G. Knepley . time   - The time
8341bb7acecfSBarry Smith . label  - The `DMLabel` marking the portion of the domain to output
8342a6e0b375SMatthew G. Knepley . numIds - The number of label ids to use
8343a6e0b375SMatthew G. Knepley . ids    - The label ids to use for marking
8344bb7acecfSBarry Smith . Nc     - The number of components to set in the output, or `PETSC_DETERMINE` for all components
834520f4b53cSBarry Smith . comps  - The components to set in the output, or `NULL` for all components
8346a6e0b375SMatthew G. Knepley . localU - The input field vector
8347a6e0b375SMatthew G. Knepley . funcs  - The functions to evaluate, one per field
8348a6e0b375SMatthew G. Knepley - mode   - The insertion mode for values
8349a6e0b375SMatthew G. Knepley 
8350a6e0b375SMatthew G. Knepley   Output Parameter:
8351a6e0b375SMatthew G. Knepley . localX - The output vector
8352a6e0b375SMatthew G. Knepley 
835320f4b53cSBarry Smith   Calling sequence of `funcs`:
8354a6e0b375SMatthew G. Knepley + dim          - The spatial dimension
8355a6e0b375SMatthew G. Knepley . Nf           - The number of input fields
8356a6e0b375SMatthew G. Knepley . NfAux        - The number of input auxiliary fields
8357a6e0b375SMatthew G. Knepley . uOff         - The offset of each field in u[]
8358a6e0b375SMatthew G. Knepley . uOff_x       - The offset of each field in u_x[]
8359a6e0b375SMatthew G. Knepley . u            - The field values at this point in space
8360a6e0b375SMatthew G. Knepley . u_t          - The field time derivative at this point in space (or NULL)
8361a6e0b375SMatthew G. Knepley . u_x          - The field derivatives at this point in space
8362a6e0b375SMatthew G. Knepley . aOff         - The offset of each auxiliary field in u[]
8363a6e0b375SMatthew G. Knepley . aOff_x       - The offset of each auxiliary field in u_x[]
8364a6e0b375SMatthew G. Knepley . a            - The auxiliary field values at this point in space
8365a6e0b375SMatthew G. Knepley . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8366a6e0b375SMatthew G. Knepley . a_x          - The auxiliary field derivatives at this point in space
8367a6e0b375SMatthew G. Knepley . t            - The current time
8368a6e0b375SMatthew G. Knepley . x            - The coordinates of this point
8369a6e0b375SMatthew G. Knepley . numConstants - The number of constants
8370a6e0b375SMatthew G. Knepley . constants    - The value of each constant
8371a6e0b375SMatthew G. Knepley - f            - The value of the function at this point in space
8372a6e0b375SMatthew G. Knepley 
837373ff1848SBarry Smith   Level: intermediate
837473ff1848SBarry Smith 
8375bb7acecfSBarry Smith   Note:
8376bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8377bb7acecfSBarry Smith   The input `DM`, attached to localU, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8378bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8379a6e0b375SMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8380a6e0b375SMatthew G. Knepley 
8381bb7acecfSBarry Smith   Developer Notes:
8382bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8383bb7acecfSBarry Smith 
8384bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8385bb7acecfSBarry Smith 
83861cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabel()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8387a6e0b375SMatthew G. Knepley @*/
8388a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX)
8389d71ae5a4SJacob Faibussowitsch {
83908c6c5593SMatthew G. Knepley   PetscFunctionBegin;
83918c6c5593SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8392064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localU, VEC_CLASSID, 8);
8393064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
8394fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX);
83953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
83968c6c5593SMatthew G. Knepley }
83978c6c5593SMatthew G. Knepley 
83982716604bSToby Isaac /*@C
8399d29d7c6eSMatthew G. Knepley   DMProjectFieldLabel - This projects the given function of the input fields into the function space provided, putting the coefficients in a global vector, calculating only over the portion of the domain specified by the label.
8400d29d7c6eSMatthew G. Knepley 
840120f4b53cSBarry Smith   Not Collective
8402d29d7c6eSMatthew G. Knepley 
8403d29d7c6eSMatthew G. Knepley   Input Parameters:
8404bb7acecfSBarry Smith + dm     - The `DM`
8405d29d7c6eSMatthew G. Knepley . time   - The time
8406bb7acecfSBarry Smith . label  - The `DMLabel` marking the portion of the domain to output
8407d29d7c6eSMatthew G. Knepley . numIds - The number of label ids to use
8408d29d7c6eSMatthew G. Knepley . ids    - The label ids to use for marking
8409bb7acecfSBarry Smith . Nc     - The number of components to set in the output, or `PETSC_DETERMINE` for all components
841020f4b53cSBarry Smith . comps  - The components to set in the output, or `NULL` for all components
8411d29d7c6eSMatthew G. Knepley . U      - The input field vector
8412d29d7c6eSMatthew G. Knepley . funcs  - The functions to evaluate, one per field
8413d29d7c6eSMatthew G. Knepley - mode   - The insertion mode for values
8414d29d7c6eSMatthew G. Knepley 
8415d29d7c6eSMatthew G. Knepley   Output Parameter:
8416d29d7c6eSMatthew G. Knepley . X - The output vector
8417d29d7c6eSMatthew G. Knepley 
841820f4b53cSBarry Smith   Calling sequence of `funcs`:
8419d29d7c6eSMatthew G. Knepley + dim          - The spatial dimension
8420d29d7c6eSMatthew G. Knepley . Nf           - The number of input fields
8421d29d7c6eSMatthew G. Knepley . NfAux        - The number of input auxiliary fields
8422d29d7c6eSMatthew G. Knepley . uOff         - The offset of each field in u[]
8423d29d7c6eSMatthew G. Knepley . uOff_x       - The offset of each field in u_x[]
8424d29d7c6eSMatthew G. Knepley . u            - The field values at this point in space
8425d29d7c6eSMatthew G. Knepley . u_t          - The field time derivative at this point in space (or NULL)
8426d29d7c6eSMatthew G. Knepley . u_x          - The field derivatives at this point in space
8427d29d7c6eSMatthew G. Knepley . aOff         - The offset of each auxiliary field in u[]
8428d29d7c6eSMatthew G. Knepley . aOff_x       - The offset of each auxiliary field in u_x[]
8429d29d7c6eSMatthew G. Knepley . a            - The auxiliary field values at this point in space
8430d29d7c6eSMatthew G. Knepley . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8431d29d7c6eSMatthew G. Knepley . a_x          - The auxiliary field derivatives at this point in space
8432d29d7c6eSMatthew G. Knepley . t            - The current time
8433d29d7c6eSMatthew G. Knepley . x            - The coordinates of this point
8434d29d7c6eSMatthew G. Knepley . numConstants - The number of constants
8435d29d7c6eSMatthew G. Knepley . constants    - The value of each constant
8436d29d7c6eSMatthew G. Knepley - f            - The value of the function at this point in space
8437d29d7c6eSMatthew G. Knepley 
843873ff1848SBarry Smith   Level: intermediate
843973ff1848SBarry Smith 
8440bb7acecfSBarry Smith   Note:
8441bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8442bb7acecfSBarry Smith   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8443bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8444d29d7c6eSMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8445d29d7c6eSMatthew G. Knepley 
8446bb7acecfSBarry Smith   Developer Notes:
8447bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8448bb7acecfSBarry Smith 
8449bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8450bb7acecfSBarry Smith 
84511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8452d29d7c6eSMatthew G. Knepley @*/
8453a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec U, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec X)
8454d71ae5a4SJacob Faibussowitsch {
8455d29d7c6eSMatthew G. Knepley   DM  dmIn;
8456d29d7c6eSMatthew G. Knepley   Vec localU, localX;
8457d29d7c6eSMatthew G. Knepley 
8458d29d7c6eSMatthew G. Knepley   PetscFunctionBegin;
8459d29d7c6eSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8460d29d7c6eSMatthew G. Knepley   PetscCall(VecGetDM(U, &dmIn));
8461d29d7c6eSMatthew G. Knepley   PetscCall(DMGetLocalVector(dmIn, &localU));
8462d29d7c6eSMatthew G. Knepley   PetscCall(DMGetLocalVector(dm, &localX));
8463f60fa741SMatthew G. Knepley   PetscCall(VecSet(localX, 0.));
846472fc1ce5SMatthew G. Knepley   PetscCall(DMGlobalToLocalBegin(dmIn, U, mode, localU));
846572fc1ce5SMatthew G. Knepley   PetscCall(DMGlobalToLocalEnd(dmIn, U, mode, localU));
8466d29d7c6eSMatthew G. Knepley   PetscCall(DMProjectFieldLabelLocal(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX));
8467d29d7c6eSMatthew G. Knepley   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
8468d29d7c6eSMatthew G. Knepley   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
8469d29d7c6eSMatthew G. Knepley   PetscCall(DMRestoreLocalVector(dm, &localX));
8470d29d7c6eSMatthew G. Knepley   PetscCall(DMRestoreLocalVector(dmIn, &localU));
84713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8472d29d7c6eSMatthew G. Knepley }
8473d29d7c6eSMatthew G. Knepley 
8474d29d7c6eSMatthew G. Knepley /*@C
8475ece3a9fcSMatthew G. Knepley   DMProjectBdFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain boundary specified by the label.
8476ece3a9fcSMatthew G. Knepley 
847720f4b53cSBarry Smith   Not Collective
8478ece3a9fcSMatthew G. Knepley 
8479ece3a9fcSMatthew G. Knepley   Input Parameters:
8480bb7acecfSBarry Smith + dm     - The `DM`
8481ece3a9fcSMatthew G. Knepley . time   - The time
8482bb7acecfSBarry Smith . label  - The `DMLabel` marking the portion of the domain boundary to output
8483ece3a9fcSMatthew G. Knepley . numIds - The number of label ids to use
8484ece3a9fcSMatthew G. Knepley . ids    - The label ids to use for marking
8485bb7acecfSBarry Smith . Nc     - The number of components to set in the output, or `PETSC_DETERMINE` for all components
848620f4b53cSBarry Smith . comps  - The components to set in the output, or `NULL` for all components
8487ece3a9fcSMatthew G. Knepley . localU - The input field vector
8488ece3a9fcSMatthew G. Knepley . funcs  - The functions to evaluate, one per field
8489ece3a9fcSMatthew G. Knepley - mode   - The insertion mode for values
8490ece3a9fcSMatthew G. Knepley 
8491ece3a9fcSMatthew G. Knepley   Output Parameter:
8492ece3a9fcSMatthew G. Knepley . localX - The output vector
8493ece3a9fcSMatthew G. Knepley 
849420f4b53cSBarry Smith   Calling sequence of `funcs`:
8495ece3a9fcSMatthew G. Knepley + dim          - The spatial dimension
8496ece3a9fcSMatthew G. Knepley . Nf           - The number of input fields
8497ece3a9fcSMatthew G. Knepley . NfAux        - The number of input auxiliary fields
8498ece3a9fcSMatthew G. Knepley . uOff         - The offset of each field in u[]
8499ece3a9fcSMatthew G. Knepley . uOff_x       - The offset of each field in u_x[]
8500ece3a9fcSMatthew G. Knepley . u            - The field values at this point in space
8501ece3a9fcSMatthew G. Knepley . u_t          - The field time derivative at this point in space (or NULL)
8502ece3a9fcSMatthew G. Knepley . u_x          - The field derivatives at this point in space
8503ece3a9fcSMatthew G. Knepley . aOff         - The offset of each auxiliary field in u[]
8504ece3a9fcSMatthew G. Knepley . aOff_x       - The offset of each auxiliary field in u_x[]
8505ece3a9fcSMatthew G. Knepley . a            - The auxiliary field values at this point in space
8506ece3a9fcSMatthew G. Knepley . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8507ece3a9fcSMatthew G. Knepley . a_x          - The auxiliary field derivatives at this point in space
8508ece3a9fcSMatthew G. Knepley . t            - The current time
8509ece3a9fcSMatthew G. Knepley . x            - The coordinates of this point
8510ece3a9fcSMatthew G. Knepley . n            - The face normal
8511ece3a9fcSMatthew G. Knepley . numConstants - The number of constants
8512ece3a9fcSMatthew G. Knepley . constants    - The value of each constant
8513ece3a9fcSMatthew G. Knepley - f            - The value of the function at this point in space
8514ece3a9fcSMatthew G. Knepley 
851573ff1848SBarry Smith   Level: intermediate
851673ff1848SBarry Smith 
8517ece3a9fcSMatthew G. Knepley   Note:
8518bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8519bb7acecfSBarry Smith   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8520bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8521ece3a9fcSMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8522ece3a9fcSMatthew G. Knepley 
8523bb7acecfSBarry Smith   Developer Notes:
8524bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8525bb7acecfSBarry Smith 
8526bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8527bb7acecfSBarry Smith 
85281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8529ece3a9fcSMatthew G. Knepley @*/
8530a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectBdFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX)
8531d71ae5a4SJacob Faibussowitsch {
8532ece3a9fcSMatthew G. Knepley   PetscFunctionBegin;
8533ece3a9fcSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8534064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localU, VEC_CLASSID, 8);
8535064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
8536fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectbdfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX);
85373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8538ece3a9fcSMatthew G. Knepley }
8539ece3a9fcSMatthew G. Knepley 
8540ece3a9fcSMatthew G. Knepley /*@C
85412716604bSToby Isaac   DMComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h.
85422716604bSToby Isaac 
854320f4b53cSBarry Smith   Collective
8544bb7acecfSBarry Smith 
85452716604bSToby Isaac   Input Parameters:
8546bb7acecfSBarry Smith + dm    - The `DM`
85470709b2feSToby Isaac . time  - The time
85482716604bSToby Isaac . funcs - The functions to evaluate for each field component
85492716604bSToby Isaac . ctxs  - Optional array of contexts to pass to each function, or NULL.
8550574a98acSMatthew G. Knepley - X     - The coefficient vector u_h, a global vector
85512716604bSToby Isaac 
85522716604bSToby Isaac   Output Parameter:
85532716604bSToby Isaac . diff - The diff ||u - u_h||_2
85542716604bSToby Isaac 
85552716604bSToby Isaac   Level: developer
85562716604bSToby Isaac 
8557bb7acecfSBarry Smith   Developer Notes:
8558bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8559bb7acecfSBarry Smith 
8560bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8561bb7acecfSBarry Smith 
85621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
85632716604bSToby Isaac @*/
8564d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
8565d71ae5a4SJacob Faibussowitsch {
85662716604bSToby Isaac   PetscFunctionBegin;
85672716604bSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8568b698f381SToby Isaac   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
8569fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, computel2diff, time, funcs, ctxs, X, diff);
85703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
85712716604bSToby Isaac }
8572b698f381SToby Isaac 
8573b698f381SToby Isaac /*@C
8574b698f381SToby Isaac   DMComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h.
8575b698f381SToby Isaac 
857620f4b53cSBarry Smith   Collective
8577d083f849SBarry Smith 
8578b698f381SToby Isaac   Input Parameters:
8579bb7acecfSBarry Smith + dm    - The `DM`
8580a4e35b19SJacob Faibussowitsch . time  - The time
8581b698f381SToby Isaac . funcs - The gradient functions to evaluate for each field component
8582b698f381SToby Isaac . ctxs  - Optional array of contexts to pass to each function, or NULL.
8583574a98acSMatthew G. Knepley . X     - The coefficient vector u_h, a global vector
8584b698f381SToby Isaac - n     - The vector to project along
8585b698f381SToby Isaac 
8586b698f381SToby Isaac   Output Parameter:
8587b698f381SToby Isaac . diff - The diff ||(grad u - grad u_h) . n||_2
8588b698f381SToby Isaac 
8589b698f381SToby Isaac   Level: developer
8590b698f381SToby Isaac 
8591bb7acecfSBarry Smith   Developer Notes:
8592bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8593bb7acecfSBarry Smith 
8594bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8595bb7acecfSBarry Smith 
85961cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMComputeL2FieldDiff()`
8597b698f381SToby Isaac @*/
8598d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff)
8599d71ae5a4SJacob Faibussowitsch {
8600b698f381SToby Isaac   PetscFunctionBegin;
8601b698f381SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8602b698f381SToby Isaac   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
8603fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, computel2gradientdiff, time, funcs, ctxs, X, n, diff);
86043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8605b698f381SToby Isaac }
8606b698f381SToby Isaac 
86072a16baeaSToby Isaac /*@C
86082a16baeaSToby Isaac   DMComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components.
86092a16baeaSToby Isaac 
861020f4b53cSBarry Smith   Collective
8611d083f849SBarry Smith 
86122a16baeaSToby Isaac   Input Parameters:
8613bb7acecfSBarry Smith + dm    - The `DM`
86142a16baeaSToby Isaac . time  - The time
86152a16baeaSToby Isaac . funcs - The functions to evaluate for each field component
86162a16baeaSToby Isaac . ctxs  - Optional array of contexts to pass to each function, or NULL.
8617574a98acSMatthew G. Knepley - X     - The coefficient vector u_h, a global vector
86182a16baeaSToby Isaac 
86192a16baeaSToby Isaac   Output Parameter:
86202a16baeaSToby Isaac . diff - The array of differences, ||u^f - u^f_h||_2
86212a16baeaSToby Isaac 
86222a16baeaSToby Isaac   Level: developer
86232a16baeaSToby Isaac 
8624bb7acecfSBarry Smith   Developer Notes:
8625bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8626bb7acecfSBarry Smith 
8627bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8628bb7acecfSBarry Smith 
862942747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2GradientDiff()`
86302a16baeaSToby Isaac @*/
8631d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[])
8632d71ae5a4SJacob Faibussowitsch {
86332a16baeaSToby Isaac   PetscFunctionBegin;
86342a16baeaSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
86352a16baeaSToby Isaac   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
8636fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, computel2fielddiff, time, funcs, ctxs, X, diff);
86373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
86382a16baeaSToby Isaac }
86392a16baeaSToby Isaac 
8640df0b854cSToby Isaac /*@C
8641bb7acecfSBarry Smith   DMGetNeighbors - Gets an array containing the MPI ranks of all the processes neighbors
8642502a2867SDave May 
8643502a2867SDave May   Not Collective
8644502a2867SDave May 
8645502a2867SDave May   Input Parameter:
8646bb7acecfSBarry Smith . dm - The `DM`
8647502a2867SDave May 
86480a19bb7dSprj-   Output Parameters:
86490a19bb7dSprj- + nranks - the number of neighbours
86500a19bb7dSprj- - ranks  - the neighbors ranks
8651502a2867SDave May 
86529bdbcad8SBarry Smith   Level: beginner
86539bdbcad8SBarry Smith 
8654bb7acecfSBarry Smith   Note:
8655bb7acecfSBarry Smith   Do not free the array, it is freed when the `DM` is destroyed.
8656502a2867SDave May 
86571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDAGetNeighbors()`, `PetscSFGetRootRanks()`
8658502a2867SDave May @*/
8659d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNeighbors(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[])
8660d71ae5a4SJacob Faibussowitsch {
8661502a2867SDave May   PetscFunctionBegin;
8662502a2867SDave May   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8663fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, getneighbors, nranks, ranks);
86643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8665502a2867SDave May }
8666502a2867SDave May 
8667531c7667SBarry Smith #include <petsc/private/matimpl.h> /* Needed because of coloring->ctype below */
8668531c7667SBarry Smith 
8669531c7667SBarry Smith /*
8670531c7667SBarry Smith     Converts the input vector to a ghosted vector and then calls the standard coloring code.
86712b6f951bSStefano Zampini     This must be a different function because it requires DM which is not defined in the Mat library
8672531c7667SBarry Smith */
867366976f2fSJacob Faibussowitsch static PetscErrorCode MatFDColoringApply_AIJDM(Mat J, MatFDColoring coloring, Vec x1, void *sctx)
8674d71ae5a4SJacob Faibussowitsch {
8675531c7667SBarry Smith   PetscFunctionBegin;
8676531c7667SBarry Smith   if (coloring->ctype == IS_COLORING_LOCAL) {
8677531c7667SBarry Smith     Vec x1local;
8678531c7667SBarry Smith     DM  dm;
86799566063dSJacob Faibussowitsch     PetscCall(MatGetDM(J, &dm));
86807a8be351SBarry Smith     PetscCheck(dm, PetscObjectComm((PetscObject)J), PETSC_ERR_ARG_INCOMP, "IS_COLORING_LOCAL requires a DM");
86819566063dSJacob Faibussowitsch     PetscCall(DMGetLocalVector(dm, &x1local));
86829566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalBegin(dm, x1, INSERT_VALUES, x1local));
86839566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalEnd(dm, x1, INSERT_VALUES, x1local));
8684531c7667SBarry Smith     x1 = x1local;
8685531c7667SBarry Smith   }
86869566063dSJacob Faibussowitsch   PetscCall(MatFDColoringApply_AIJ(J, coloring, x1, sctx));
8687531c7667SBarry Smith   if (coloring->ctype == IS_COLORING_LOCAL) {
8688531c7667SBarry Smith     DM dm;
86899566063dSJacob Faibussowitsch     PetscCall(MatGetDM(J, &dm));
86909566063dSJacob Faibussowitsch     PetscCall(DMRestoreLocalVector(dm, &x1));
8691531c7667SBarry Smith   }
86923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8693531c7667SBarry Smith }
8694531c7667SBarry Smith 
8695531c7667SBarry Smith /*@
8696bb7acecfSBarry Smith   MatFDColoringUseDM - allows a `MatFDColoring` object to use the `DM` associated with the matrix to compute a `IS_COLORING_LOCAL` coloring
8697531c7667SBarry Smith 
8698a4e35b19SJacob Faibussowitsch   Input Parameters:
8699a4e35b19SJacob Faibussowitsch + coloring   - The matrix to get the `DM` from
8700a4e35b19SJacob Faibussowitsch - fdcoloring - the `MatFDColoring` object
8701531c7667SBarry Smith 
87029bdbcad8SBarry Smith   Level: advanced
87039bdbcad8SBarry Smith 
870473ff1848SBarry Smith   Developer Note:
870573ff1848SBarry Smith   This routine exists because the PETSc `Mat` library does not know about the `DM` objects
8706531c7667SBarry Smith 
87071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatFDColoring`, `MatFDColoringCreate()`, `ISColoringType`
8708531c7667SBarry Smith @*/
8709d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringUseDM(Mat coloring, MatFDColoring fdcoloring)
8710d71ae5a4SJacob Faibussowitsch {
8711531c7667SBarry Smith   PetscFunctionBegin;
8712531c7667SBarry Smith   coloring->ops->fdcoloringapply = MatFDColoringApply_AIJDM;
87133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8714531c7667SBarry Smith }
87158320bc6fSPatrick Sanan 
87168320bc6fSPatrick Sanan /*@
8717bb7acecfSBarry Smith   DMGetCompatibility - determine if two `DM`s are compatible
87188320bc6fSPatrick Sanan 
87198320bc6fSPatrick Sanan   Collective
87208320bc6fSPatrick Sanan 
87218320bc6fSPatrick Sanan   Input Parameters:
8722bb7acecfSBarry Smith + dm1 - the first `DM`
8723bb7acecfSBarry Smith - dm2 - the second `DM`
87248320bc6fSPatrick Sanan 
87258320bc6fSPatrick Sanan   Output Parameters:
8726bb7acecfSBarry Smith + compatible - whether or not the two `DM`s are compatible
8727bb7acecfSBarry Smith - set        - whether or not the compatible value was actually determined and set
87288320bc6fSPatrick Sanan 
872920f4b53cSBarry Smith   Level: advanced
873020f4b53cSBarry Smith 
87318320bc6fSPatrick Sanan   Notes:
8732bb7acecfSBarry Smith   Two `DM`s are deemed compatible if they represent the same parallel decomposition
87333d862458SPatrick Sanan   of the same topology. This implies that the section (field data) on one
87348320bc6fSPatrick Sanan   "makes sense" with respect to the topology and parallel decomposition of the other.
8735bb7acecfSBarry Smith   Loosely speaking, compatible `DM`s represent the same domain and parallel
87363d862458SPatrick Sanan   decomposition, but hold different data.
87378320bc6fSPatrick Sanan 
87388320bc6fSPatrick Sanan   Typically, one would confirm compatibility if intending to simultaneously iterate
8739bb7acecfSBarry Smith   over a pair of vectors obtained from different `DM`s.
87408320bc6fSPatrick Sanan 
8741bb7acecfSBarry Smith   For example, two `DMDA` objects are compatible if they have the same local
87428320bc6fSPatrick Sanan   and global sizes and the same stencil width. They can have different numbers
87438320bc6fSPatrick Sanan   of degrees of freedom per node. Thus, one could use the node numbering from
8744bb7acecfSBarry Smith   either `DM` in bounds for a loop over vectors derived from either `DM`.
87458320bc6fSPatrick Sanan 
8746bb7acecfSBarry Smith   Consider the operation of summing data living on a 2-dof `DMDA` to data living
8747bb7acecfSBarry Smith   on a 1-dof `DMDA`, which should be compatible, as in the following snippet.
87488320bc6fSPatrick Sanan .vb
87498320bc6fSPatrick Sanan   ...
87509566063dSJacob Faibussowitsch   PetscCall(DMGetCompatibility(da1,da2,&compatible,&set));
87518320bc6fSPatrick Sanan   if (set && compatible)  {
87529566063dSJacob Faibussowitsch     PetscCall(DMDAVecGetArrayDOF(da1,vec1,&arr1));
87539566063dSJacob Faibussowitsch     PetscCall(DMDAVecGetArrayDOF(da2,vec2,&arr2));
87549566063dSJacob Faibussowitsch     PetscCall(DMDAGetCorners(da1,&x,&y,NULL,&m,&n,NULL));
87558320bc6fSPatrick Sanan     for (j=y; j<y+n; ++j) {
87568320bc6fSPatrick Sanan       for (i=x; i<x+m, ++i) {
87578320bc6fSPatrick Sanan         arr1[j][i][0] = arr2[j][i][0] + arr2[j][i][1];
87588320bc6fSPatrick Sanan       }
87598320bc6fSPatrick Sanan     }
87609566063dSJacob Faibussowitsch     PetscCall(DMDAVecRestoreArrayDOF(da1,vec1,&arr1));
87619566063dSJacob Faibussowitsch     PetscCall(DMDAVecRestoreArrayDOF(da2,vec2,&arr2));
87628320bc6fSPatrick Sanan   } else {
87638320bc6fSPatrick Sanan     SETERRQ(PetscObjectComm((PetscObject)da1,PETSC_ERR_ARG_INCOMP,"DMDA objects incompatible");
87648320bc6fSPatrick Sanan   }
87658320bc6fSPatrick Sanan   ...
87668320bc6fSPatrick Sanan .ve
87678320bc6fSPatrick Sanan 
8768bb7acecfSBarry Smith   Checking compatibility might be expensive for a given implementation of `DM`,
87698320bc6fSPatrick Sanan   or might be impossible to unambiguously confirm or deny. For this reason,
87708320bc6fSPatrick Sanan   this function may decline to determine compatibility, and hence users should
87718320bc6fSPatrick Sanan   always check the "set" output parameter.
87728320bc6fSPatrick Sanan 
8773bb7acecfSBarry Smith   A `DM` is always compatible with itself.
87748320bc6fSPatrick Sanan 
8775bb7acecfSBarry Smith   In the current implementation, `DM`s which live on "unequal" communicators
87768320bc6fSPatrick Sanan   (MPI_UNEQUAL in the terminology of MPI_Comm_compare()) are always deemed
87778320bc6fSPatrick Sanan   incompatible.
87788320bc6fSPatrick Sanan 
87798320bc6fSPatrick Sanan   This function is labeled "Collective," as information about all subdomains
8780bb7acecfSBarry Smith   is required on each rank. However, in `DM` implementations which store all this
87818320bc6fSPatrick Sanan   information locally, this function may be merely "Logically Collective".
87828320bc6fSPatrick Sanan 
878373ff1848SBarry Smith   Developer Note:
8784bb7acecfSBarry Smith   Compatibility is assumed to be a symmetric concept; `DM` A is compatible with `DM` B
87853d862458SPatrick Sanan   iff B is compatible with A. Thus, this function checks the implementations
8786a5bc1bf3SBarry Smith   of both dm and dmc (if they are of different types), attempting to determine
8787bb7acecfSBarry Smith   compatibility. It is left to `DM` implementers to ensure that symmetry is
87888320bc6fSPatrick Sanan   preserved. The simplest way to do this is, when implementing type-specific
87893d862458SPatrick Sanan   logic for this function, is to check for existing logic in the implementation
8790bb7acecfSBarry Smith   of other `DM` types and let *set = PETSC_FALSE if found.
87918320bc6fSPatrick Sanan 
87921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreateCompatibleDMDA()`, `DMStagCreateCompatibleDMStag()`
87938320bc6fSPatrick Sanan @*/
8794d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCompatibility(DM dm1, DM dm2, PetscBool *compatible, PetscBool *set)
8795d71ae5a4SJacob Faibussowitsch {
87968320bc6fSPatrick Sanan   PetscMPIInt compareResult;
87978320bc6fSPatrick Sanan   DMType      type, type2;
87988320bc6fSPatrick Sanan   PetscBool   sameType;
87998320bc6fSPatrick Sanan 
88008320bc6fSPatrick Sanan   PetscFunctionBegin;
8801a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dm1, DM_CLASSID, 1);
88028320bc6fSPatrick Sanan   PetscValidHeaderSpecific(dm2, DM_CLASSID, 2);
88038320bc6fSPatrick Sanan 
88048320bc6fSPatrick Sanan   /* Declare a DM compatible with itself */
8805a5bc1bf3SBarry Smith   if (dm1 == dm2) {
88068320bc6fSPatrick Sanan     *set        = PETSC_TRUE;
88078320bc6fSPatrick Sanan     *compatible = PETSC_TRUE;
88083ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
88098320bc6fSPatrick Sanan   }
88108320bc6fSPatrick Sanan 
88118320bc6fSPatrick Sanan   /* Declare a DM incompatible with a DM that lives on an "unequal"
88128320bc6fSPatrick Sanan      communicator. Note that this does not preclude compatibility with
88138320bc6fSPatrick Sanan      DMs living on "congruent" or "similar" communicators, but this must be
88148320bc6fSPatrick Sanan      determined by the implementation-specific logic */
88159566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)dm1), PetscObjectComm((PetscObject)dm2), &compareResult));
88168320bc6fSPatrick Sanan   if (compareResult == MPI_UNEQUAL) {
88178320bc6fSPatrick Sanan     *set        = PETSC_TRUE;
88188320bc6fSPatrick Sanan     *compatible = PETSC_FALSE;
88193ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
88208320bc6fSPatrick Sanan   }
88218320bc6fSPatrick Sanan 
88228320bc6fSPatrick Sanan   /* Pass to the implementation-specific routine, if one exists. */
8823a5bc1bf3SBarry Smith   if (dm1->ops->getcompatibility) {
8824dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm1, getcompatibility, dm2, compatible, set);
88253ba16761SJacob Faibussowitsch     if (*set) PetscFunctionReturn(PETSC_SUCCESS);
88268320bc6fSPatrick Sanan   }
88278320bc6fSPatrick Sanan 
8828a5bc1bf3SBarry Smith   /* If dm1 and dm2 are of different types, then attempt to check compatibility
88298320bc6fSPatrick Sanan      with an implementation of this function from dm2 */
88309566063dSJacob Faibussowitsch   PetscCall(DMGetType(dm1, &type));
88319566063dSJacob Faibussowitsch   PetscCall(DMGetType(dm2, &type2));
88329566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(type, type2, &sameType));
88338320bc6fSPatrick Sanan   if (!sameType && dm2->ops->getcompatibility) {
8834dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm2, getcompatibility, dm1, compatible, set); /* Note argument order */
88358320bc6fSPatrick Sanan   } else {
88368320bc6fSPatrick Sanan     *set = PETSC_FALSE;
88378320bc6fSPatrick Sanan   }
88383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
88398320bc6fSPatrick Sanan }
8840c0f0dcc3SMatthew G. Knepley 
8841c0f0dcc3SMatthew G. Knepley /*@C
8842bb7acecfSBarry Smith   DMMonitorSet - Sets an additional monitor function that is to be used after a solve to monitor discretization performance.
8843c0f0dcc3SMatthew G. Knepley 
884420f4b53cSBarry Smith   Logically Collective
8845c0f0dcc3SMatthew G. Knepley 
8846c0f0dcc3SMatthew G. Knepley   Input Parameters:
884760225df5SJacob Faibussowitsch + dm             - the `DM`
8848c0f0dcc3SMatthew G. Knepley . f              - the monitor function
884920f4b53cSBarry Smith . mctx           - [optional] user-defined context for private data for the monitor routine (use `NULL` if no context is desired)
885049abdd8aSBarry Smith - monitordestroy - [optional] routine that frees monitor context (may be `NULL`), see `PetscCtxDestroyFn` for the calling sequence
8851c0f0dcc3SMatthew G. Knepley 
885220f4b53cSBarry Smith   Options Database Key:
885360225df5SJacob Faibussowitsch . -dm_monitor_cancel - cancels all monitors that have been hardwired into a code by calls to `DMMonitorSet()`, but
8854c0f0dcc3SMatthew G. Knepley                        does not cancel those set via the options database.
8855c0f0dcc3SMatthew G. Knepley 
88569bdbcad8SBarry Smith   Level: intermediate
88579bdbcad8SBarry Smith 
8858bb7acecfSBarry Smith   Note:
8859c0f0dcc3SMatthew G. Knepley   Several different monitoring routines may be set by calling
8860bb7acecfSBarry Smith   `DMMonitorSet()` multiple times or with `DMMonitorSetFromOptions()`; all will be called in the
8861c0f0dcc3SMatthew G. Knepley   order in which they were set.
8862c0f0dcc3SMatthew G. Knepley 
886373ff1848SBarry Smith   Fortran Note:
8864bb7acecfSBarry Smith   Only a single monitor function can be set for each `DM` object
8865bb7acecfSBarry Smith 
886673ff1848SBarry Smith   Developer Note:
8867bb7acecfSBarry Smith   This API has a generic name but seems specific to a very particular aspect of the use of `DM`
8868c0f0dcc3SMatthew G. Knepley 
886949abdd8aSBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorCancel()`, `DMMonitorSetFromOptions()`, `DMMonitor()`, `PetscCtxDestroyFn`
8870c0f0dcc3SMatthew G. Knepley @*/
887149abdd8aSBarry Smith PetscErrorCode DMMonitorSet(DM dm, PetscErrorCode (*f)(DM, void *), void *mctx, PetscCtxDestroyFn *monitordestroy)
8872d71ae5a4SJacob Faibussowitsch {
8873c0f0dcc3SMatthew G. Knepley   PetscInt m;
8874c0f0dcc3SMatthew G. Knepley 
8875c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
8876c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8877c0f0dcc3SMatthew G. Knepley   for (m = 0; m < dm->numbermonitors; ++m) {
8878c0f0dcc3SMatthew G. Knepley     PetscBool identical;
8879c0f0dcc3SMatthew G. Knepley 
88809566063dSJacob Faibussowitsch     PetscCall(PetscMonitorCompare((PetscErrorCode (*)(void))f, mctx, monitordestroy, (PetscErrorCode (*)(void))dm->monitor[m], dm->monitorcontext[m], dm->monitordestroy[m], &identical));
88813ba16761SJacob Faibussowitsch     if (identical) PetscFunctionReturn(PETSC_SUCCESS);
8882c0f0dcc3SMatthew G. Knepley   }
88837a8be351SBarry Smith   PetscCheck(dm->numbermonitors < MAXDMMONITORS, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many monitors set");
8884c0f0dcc3SMatthew G. Knepley   dm->monitor[dm->numbermonitors]          = f;
8885c0f0dcc3SMatthew G. Knepley   dm->monitordestroy[dm->numbermonitors]   = monitordestroy;
8886835f2295SStefano Zampini   dm->monitorcontext[dm->numbermonitors++] = mctx;
88873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8888c0f0dcc3SMatthew G. Knepley }
8889c0f0dcc3SMatthew G. Knepley 
8890c0f0dcc3SMatthew G. Knepley /*@
8891bb7acecfSBarry Smith   DMMonitorCancel - Clears all the monitor functions for a `DM` object.
8892c0f0dcc3SMatthew G. Knepley 
889320f4b53cSBarry Smith   Logically Collective
8894c0f0dcc3SMatthew G. Knepley 
8895c0f0dcc3SMatthew G. Knepley   Input Parameter:
8896c0f0dcc3SMatthew G. Knepley . dm - the DM
8897c0f0dcc3SMatthew G. Knepley 
8898c0f0dcc3SMatthew G. Knepley   Options Database Key:
8899c0f0dcc3SMatthew G. Knepley . -dm_monitor_cancel - cancels all monitors that have been hardwired
8900bb7acecfSBarry Smith   into a code by calls to `DMonitorSet()`, but does not cancel those
8901c0f0dcc3SMatthew G. Knepley   set via the options database
8902c0f0dcc3SMatthew G. Knepley 
89039bdbcad8SBarry Smith   Level: intermediate
89049bdbcad8SBarry Smith 
8905bb7acecfSBarry Smith   Note:
8906bb7acecfSBarry Smith   There is no way to clear one specific monitor from a `DM` object.
8907c0f0dcc3SMatthew G. Knepley 
89081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`, `DMMonitor()`
8909c0f0dcc3SMatthew G. Knepley @*/
8910d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorCancel(DM dm)
8911d71ae5a4SJacob Faibussowitsch {
8912c0f0dcc3SMatthew G. Knepley   PetscInt m;
8913c0f0dcc3SMatthew G. Knepley 
8914c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
8915c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8916c0f0dcc3SMatthew G. Knepley   for (m = 0; m < dm->numbermonitors; ++m) {
89179566063dSJacob Faibussowitsch     if (dm->monitordestroy[m]) PetscCall((*dm->monitordestroy[m])(&dm->monitorcontext[m]));
8918c0f0dcc3SMatthew G. Knepley   }
8919c0f0dcc3SMatthew G. Knepley   dm->numbermonitors = 0;
89203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8921c0f0dcc3SMatthew G. Knepley }
8922c0f0dcc3SMatthew G. Knepley 
8923c0f0dcc3SMatthew G. Knepley /*@C
8924c0f0dcc3SMatthew G. Knepley   DMMonitorSetFromOptions - Sets a monitor function and viewer appropriate for the type indicated by the user
8925c0f0dcc3SMatthew G. Knepley 
892620f4b53cSBarry Smith   Collective
8927c0f0dcc3SMatthew G. Knepley 
8928c0f0dcc3SMatthew G. Knepley   Input Parameters:
8929bb7acecfSBarry Smith + dm           - `DM` object you wish to monitor
8930c0f0dcc3SMatthew G. Knepley . name         - the monitor type one is seeking
8931c0f0dcc3SMatthew G. Knepley . help         - message indicating what monitoring is done
8932c0f0dcc3SMatthew G. Knepley . manual       - manual page for the monitor
893349abdd8aSBarry Smith . monitor      - the monitor function, this must use a `PetscViewerFormat` as its context
8934bb7acecfSBarry Smith - monitorsetup - a function that is called once ONLY if the user selected this monitor that may set additional features of the `DM` or `PetscViewer` objects
8935c0f0dcc3SMatthew G. Knepley 
8936c0f0dcc3SMatthew G. Knepley   Output Parameter:
8937c0f0dcc3SMatthew G. Knepley . flg - Flag set if the monitor was created
8938c0f0dcc3SMatthew G. Knepley 
8939c0f0dcc3SMatthew G. Knepley   Level: developer
8940c0f0dcc3SMatthew G. Knepley 
8941648c30bcSBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscOptionsCreateViewer()`, `PetscOptionsGetReal()`, `PetscOptionsHasName()`, `PetscOptionsGetString()`,
8942db781477SPatrick Sanan           `PetscOptionsGetIntArray()`, `PetscOptionsGetRealArray()`, `PetscOptionsBool()`
894360225df5SJacob Faibussowitsch           `PetscOptionsInt()`, `PetscOptionsString()`, `PetscOptionsReal()`,
8944db781477SPatrick Sanan           `PetscOptionsName()`, `PetscOptionsBegin()`, `PetscOptionsEnd()`, `PetscOptionsHeadBegin()`,
8945c2e3fba1SPatrick Sanan           `PetscOptionsStringArray()`, `PetscOptionsRealArray()`, `PetscOptionsScalar()`,
8946db781477SPatrick Sanan           `PetscOptionsBoolGroupBegin()`, `PetscOptionsBoolGroup()`, `PetscOptionsBoolGroupEnd()`,
8947bb7acecfSBarry Smith           `PetscOptionsFList()`, `PetscOptionsEList()`, `DMMonitor()`, `DMMonitorSet()`
8948c0f0dcc3SMatthew G. Knepley @*/
8949d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSetFromOptions(DM dm, const char name[], const char help[], const char manual[], PetscErrorCode (*monitor)(DM, void *), PetscErrorCode (*monitorsetup)(DM, PetscViewerAndFormat *), PetscBool *flg)
8950d71ae5a4SJacob Faibussowitsch {
8951c0f0dcc3SMatthew G. Knepley   PetscViewer       viewer;
8952c0f0dcc3SMatthew G. Knepley   PetscViewerFormat format;
8953c0f0dcc3SMatthew G. Knepley 
8954c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
8955c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8956648c30bcSBarry Smith   PetscCall(PetscOptionsCreateViewer(PetscObjectComm((PetscObject)dm), ((PetscObject)dm)->options, ((PetscObject)dm)->prefix, name, &viewer, &format, flg));
8957c0f0dcc3SMatthew G. Knepley   if (*flg) {
8958c0f0dcc3SMatthew G. Knepley     PetscViewerAndFormat *vf;
8959c0f0dcc3SMatthew G. Knepley 
89609566063dSJacob Faibussowitsch     PetscCall(PetscViewerAndFormatCreate(viewer, format, &vf));
8961648c30bcSBarry Smith     PetscCall(PetscViewerDestroy(&viewer));
89629566063dSJacob Faibussowitsch     if (monitorsetup) PetscCall((*monitorsetup)(dm, vf));
8963835f2295SStefano Zampini     PetscCall(DMMonitorSet(dm, monitor, vf, (PetscCtxDestroyFn *)PetscViewerAndFormatDestroy));
8964c0f0dcc3SMatthew G. Knepley   }
89653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8966c0f0dcc3SMatthew G. Knepley }
8967c0f0dcc3SMatthew G. Knepley 
8968c0f0dcc3SMatthew G. Knepley /*@
8969c0f0dcc3SMatthew G. Knepley   DMMonitor - runs the user provided monitor routines, if they exist
8970c0f0dcc3SMatthew G. Knepley 
897120f4b53cSBarry Smith   Collective
8972c0f0dcc3SMatthew G. Knepley 
89732fe279fdSBarry Smith   Input Parameter:
8974bb7acecfSBarry Smith . dm - The `DM`
8975c0f0dcc3SMatthew G. Knepley 
8976c0f0dcc3SMatthew G. Knepley   Level: developer
8977c0f0dcc3SMatthew G. Knepley 
897873ff1848SBarry Smith   Developer Note:
8979a4e35b19SJacob Faibussowitsch   Note should indicate when during the life of the `DM` the monitor is run. It appears to be
8980a4e35b19SJacob Faibussowitsch   related to the discretization process seems rather specialized since some `DM` have no
8981a4e35b19SJacob Faibussowitsch   concept of discretization.
8982bb7acecfSBarry Smith 
89831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`
8984c0f0dcc3SMatthew G. Knepley @*/
8985d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitor(DM dm)
8986d71ae5a4SJacob Faibussowitsch {
8987c0f0dcc3SMatthew G. Knepley   PetscInt m;
8988c0f0dcc3SMatthew G. Knepley 
8989c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
89903ba16761SJacob Faibussowitsch   if (!dm) PetscFunctionReturn(PETSC_SUCCESS);
8991c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
899248a46eb9SPierre Jolivet   for (m = 0; m < dm->numbermonitors; ++m) PetscCall((*dm->monitor[m])(dm, dm->monitorcontext[m]));
89933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8994c0f0dcc3SMatthew G. Knepley }
89952e4af2aeSMatthew G. Knepley 
89962e4af2aeSMatthew G. Knepley /*@
8997bb7acecfSBarry Smith   DMComputeError - Computes the error assuming the user has provided the exact solution functions
89982e4af2aeSMatthew G. Knepley 
899920f4b53cSBarry Smith   Collective
90002e4af2aeSMatthew G. Knepley 
90012e4af2aeSMatthew G. Knepley   Input Parameters:
9002bb7acecfSBarry Smith + dm  - The `DM`
90036b867d5aSJose E. Roman - sol - The solution vector
90042e4af2aeSMatthew G. Knepley 
90056b867d5aSJose E. Roman   Input/Output Parameter:
900620f4b53cSBarry Smith . errors - An array of length Nf, the number of fields, or `NULL` for no output; on output
90076b867d5aSJose E. Roman            contains the error in each field
90086b867d5aSJose E. Roman 
90096b867d5aSJose E. Roman   Output Parameter:
901020f4b53cSBarry Smith . errorVec - A vector to hold the cellwise error (may be `NULL`)
901120f4b53cSBarry Smith 
901220f4b53cSBarry Smith   Level: developer
90132e4af2aeSMatthew G. Knepley 
9014bb7acecfSBarry Smith   Note:
9015bb7acecfSBarry Smith   The exact solutions come from the `PetscDS` object, and the time comes from `DMGetOutputSequenceNumber()`.
90162e4af2aeSMatthew G. Knepley 
90171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMGetRegionNumDS()`, `PetscDSGetExactSolution()`, `DMGetOutputSequenceNumber()`
90182e4af2aeSMatthew G. Knepley @*/
9019d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeError(DM dm, Vec sol, PetscReal errors[], Vec *errorVec)
9020d71ae5a4SJacob Faibussowitsch {
90212e4af2aeSMatthew G. Knepley   PetscErrorCode (**exactSol)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *);
90222e4af2aeSMatthew G. Knepley   void    **ctxs;
90232e4af2aeSMatthew G. Knepley   PetscReal time;
90242e4af2aeSMatthew G. Knepley   PetscInt  Nf, f, Nds, s;
90252e4af2aeSMatthew G. Knepley 
90262e4af2aeSMatthew G. Knepley   PetscFunctionBegin;
90279566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
90289566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(Nf, &exactSol, Nf, &ctxs));
90299566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
90302e4af2aeSMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
90312e4af2aeSMatthew G. Knepley     PetscDS         ds;
90322e4af2aeSMatthew G. Knepley     DMLabel         label;
90332e4af2aeSMatthew G. Knepley     IS              fieldIS;
90342e4af2aeSMatthew G. Knepley     const PetscInt *fields;
90352e4af2aeSMatthew G. Knepley     PetscInt        dsNf;
90362e4af2aeSMatthew G. Knepley 
903707218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL));
90389566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsNf));
90399566063dSJacob Faibussowitsch     if (fieldIS) PetscCall(ISGetIndices(fieldIS, &fields));
90402e4af2aeSMatthew G. Knepley     for (f = 0; f < dsNf; ++f) {
90412e4af2aeSMatthew G. Knepley       const PetscInt field = fields[f];
90429566063dSJacob Faibussowitsch       PetscCall(PetscDSGetExactSolution(ds, field, &exactSol[field], &ctxs[field]));
90432e4af2aeSMatthew G. Knepley     }
90449566063dSJacob Faibussowitsch     if (fieldIS) PetscCall(ISRestoreIndices(fieldIS, &fields));
90452e4af2aeSMatthew G. Knepley   }
9046ad540459SPierre Jolivet   for (f = 0; f < Nf; ++f) PetscCheck(exactSol[f], PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "DS must contain exact solution functions in order to calculate error, missing for field %" PetscInt_FMT, f);
90479566063dSJacob Faibussowitsch   PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time));
90489566063dSJacob Faibussowitsch   if (errors) PetscCall(DMComputeL2FieldDiff(dm, time, exactSol, ctxs, sol, errors));
90492e4af2aeSMatthew G. Knepley   if (errorVec) {
90502e4af2aeSMatthew G. Knepley     DM             edm;
90512e4af2aeSMatthew G. Knepley     DMPolytopeType ct;
90522e4af2aeSMatthew G. Knepley     PetscBool      simplex;
90532e4af2aeSMatthew G. Knepley     PetscInt       dim, cStart, Nf;
90542e4af2aeSMatthew G. Knepley 
90559566063dSJacob Faibussowitsch     PetscCall(DMClone(dm, &edm));
90569566063dSJacob Faibussowitsch     PetscCall(DMGetDimension(edm, &dim));
90579566063dSJacob Faibussowitsch     PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL));
90589566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCellType(dm, cStart, &ct));
90592e4af2aeSMatthew G. Knepley     simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE;
90609566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
90612e4af2aeSMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
90622e4af2aeSMatthew G. Knepley       PetscFE         fe, efe;
90632e4af2aeSMatthew G. Knepley       PetscQuadrature q;
90642e4af2aeSMatthew G. Knepley       const char     *name;
90652e4af2aeSMatthew G. Knepley 
90669566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe));
90679566063dSJacob Faibussowitsch       PetscCall(PetscFECreateLagrange(PETSC_COMM_SELF, dim, Nf, simplex, 0, PETSC_DETERMINE, &efe));
90689566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetName((PetscObject)fe, &name));
90699566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)efe, name));
90709566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &q));
90719566063dSJacob Faibussowitsch       PetscCall(PetscFESetQuadrature(efe, q));
90729566063dSJacob Faibussowitsch       PetscCall(DMSetField(edm, f, NULL, (PetscObject)efe));
90739566063dSJacob Faibussowitsch       PetscCall(PetscFEDestroy(&efe));
90742e4af2aeSMatthew G. Knepley     }
90759566063dSJacob Faibussowitsch     PetscCall(DMCreateDS(edm));
90762e4af2aeSMatthew G. Knepley 
90779566063dSJacob Faibussowitsch     PetscCall(DMCreateGlobalVector(edm, errorVec));
90789566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)*errorVec, "Error"));
90799566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeL2DiffVec(dm, time, exactSol, ctxs, sol, *errorVec));
90809566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&edm));
90812e4af2aeSMatthew G. Knepley   }
90829566063dSJacob Faibussowitsch   PetscCall(PetscFree2(exactSol, ctxs));
90833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
90842e4af2aeSMatthew G. Knepley }
90859a2a23afSMatthew G. Knepley 
90869a2a23afSMatthew G. Knepley /*@
9087bb7acecfSBarry Smith   DMGetNumAuxiliaryVec - Get the number of auxiliary vectors associated with this `DM`
90889a2a23afSMatthew G. Knepley 
908920f4b53cSBarry Smith   Not Collective
90909a2a23afSMatthew G. Knepley 
90919a2a23afSMatthew G. Knepley   Input Parameter:
9092bb7acecfSBarry Smith . dm - The `DM`
90939a2a23afSMatthew G. Knepley 
90949a2a23afSMatthew G. Knepley   Output Parameter:
9095a5b23f4aSJose E. Roman . numAux - The number of auxiliary data vectors
90969a2a23afSMatthew G. Knepley 
90979a2a23afSMatthew G. Knepley   Level: advanced
90989a2a23afSMatthew G. Knepley 
9099e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMGetAuxiliaryVec()`
91009a2a23afSMatthew G. Knepley @*/
9101d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumAuxiliaryVec(DM dm, PetscInt *numAux)
9102d71ae5a4SJacob Faibussowitsch {
91039a2a23afSMatthew G. Knepley   PetscFunctionBegin;
91049a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
91059566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxGetSize(dm->auxData, numAux));
91063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
91079a2a23afSMatthew G. Knepley }
91089a2a23afSMatthew G. Knepley 
91099a2a23afSMatthew G. Knepley /*@
9110ac17215fSMatthew G. Knepley   DMGetAuxiliaryVec - Get the auxiliary vector for region specified by the given label and value, and equation part
91119a2a23afSMatthew G. Knepley 
911220f4b53cSBarry Smith   Not Collective
91139a2a23afSMatthew G. Knepley 
91149a2a23afSMatthew G. Knepley   Input Parameters:
9115bb7acecfSBarry Smith + dm    - The `DM`
9116bb7acecfSBarry Smith . label - The `DMLabel`
9117ac17215fSMatthew G. Knepley . value - The label value indicating the region
9118ac17215fSMatthew G. Knepley - part  - The equation part, or 0 if unused
91199a2a23afSMatthew G. Knepley 
91209a2a23afSMatthew G. Knepley   Output Parameter:
9121bb7acecfSBarry Smith . aux - The `Vec` holding auxiliary field data
91229a2a23afSMatthew G. Knepley 
91239bdbcad8SBarry Smith   Level: advanced
91249bdbcad8SBarry Smith 
9125bb7acecfSBarry Smith   Note:
9126bb7acecfSBarry Smith   If no auxiliary vector is found for this (label, value), (NULL, 0, 0) is checked as well.
912704c51a94SMatthew G. Knepley 
9128e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryLabels()`
91299a2a23afSMatthew G. Knepley @*/
9130d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec *aux)
9131d71ae5a4SJacob Faibussowitsch {
9132ac17215fSMatthew G. Knepley   PetscHashAuxKey key, wild = {NULL, 0, 0};
913304c51a94SMatthew G. Knepley   PetscBool       has;
91349a2a23afSMatthew G. Knepley 
91359a2a23afSMatthew G. Knepley   PetscFunctionBegin;
91369a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
91379a2a23afSMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
91389a2a23afSMatthew G. Knepley   key.label = label;
91399a2a23afSMatthew G. Knepley   key.value = value;
9140ac17215fSMatthew G. Knepley   key.part  = part;
91419566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxHas(dm->auxData, key, &has));
91429566063dSJacob Faibussowitsch   if (has) PetscCall(PetscHMapAuxGet(dm->auxData, key, aux));
91439566063dSJacob Faibussowitsch   else PetscCall(PetscHMapAuxGet(dm->auxData, wild, aux));
91443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
91459a2a23afSMatthew G. Knepley }
91469a2a23afSMatthew G. Knepley 
91479a2a23afSMatthew G. Knepley /*@
9148bb7acecfSBarry Smith   DMSetAuxiliaryVec - Set an auxiliary vector for region specified by the given label and value, and equation part
91499a2a23afSMatthew G. Knepley 
915020f4b53cSBarry Smith   Not Collective because auxiliary vectors are not parallel
91519a2a23afSMatthew G. Knepley 
91529a2a23afSMatthew G. Knepley   Input Parameters:
9153bb7acecfSBarry Smith + dm    - The `DM`
9154bb7acecfSBarry Smith . label - The `DMLabel`
91559a2a23afSMatthew G. Knepley . value - The label value indicating the region
9156ac17215fSMatthew G. Knepley . part  - The equation part, or 0 if unused
9157bb7acecfSBarry Smith - aux   - The `Vec` holding auxiliary field data
91589a2a23afSMatthew G. Knepley 
91599a2a23afSMatthew G. Knepley   Level: advanced
91609a2a23afSMatthew G. Knepley 
9161e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMCopyAuxiliaryVec()`
91629a2a23afSMatthew G. Knepley @*/
9163d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec aux)
9164d71ae5a4SJacob Faibussowitsch {
91659a2a23afSMatthew G. Knepley   Vec             old;
91669a2a23afSMatthew G. Knepley   PetscHashAuxKey key;
91679a2a23afSMatthew G. Knepley 
91689a2a23afSMatthew G. Knepley   PetscFunctionBegin;
91699a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
91709a2a23afSMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
91719a2a23afSMatthew G. Knepley   key.label = label;
91729a2a23afSMatthew G. Knepley   key.value = value;
9173ac17215fSMatthew G. Knepley   key.part  = part;
91749566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxGet(dm->auxData, key, &old));
91759566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)aux));
91769566063dSJacob Faibussowitsch   if (!aux) PetscCall(PetscHMapAuxDel(dm->auxData, key));
91779566063dSJacob Faibussowitsch   else PetscCall(PetscHMapAuxSet(dm->auxData, key, aux));
9178d705d0eaSStefano Zampini   PetscCall(VecDestroy(&old));
91793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
91809a2a23afSMatthew G. Knepley }
91819a2a23afSMatthew G. Knepley 
9182cc4c1da9SBarry Smith /*@
9183bb7acecfSBarry Smith   DMGetAuxiliaryLabels - Get the labels, values, and parts for all auxiliary vectors in this `DM`
91849a2a23afSMatthew G. Knepley 
918520f4b53cSBarry Smith   Not Collective
91869a2a23afSMatthew G. Knepley 
91879a2a23afSMatthew G. Knepley   Input Parameter:
9188bb7acecfSBarry Smith . dm - The `DM`
91899a2a23afSMatthew G. Knepley 
91909a2a23afSMatthew G. Knepley   Output Parameters:
9191bb7acecfSBarry Smith + labels - The `DMLabel`s for each `Vec`
9192bb7acecfSBarry Smith . values - The label values for each `Vec`
9193bb7acecfSBarry Smith - parts  - The equation parts for each `Vec`
91949a2a23afSMatthew G. Knepley 
91959bdbcad8SBarry Smith   Level: advanced
91969bdbcad8SBarry Smith 
9197bb7acecfSBarry Smith   Note:
9198bb7acecfSBarry Smith   The arrays passed in must be at least as large as `DMGetNumAuxiliaryVec()`.
91999a2a23afSMatthew G. Knepley 
9200e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMCopyAuxiliaryVec()`
92019a2a23afSMatthew G. Knepley @*/
9202d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryLabels(DM dm, DMLabel labels[], PetscInt values[], PetscInt parts[])
9203d71ae5a4SJacob Faibussowitsch {
92049a2a23afSMatthew G. Knepley   PetscHashAuxKey *keys;
92059a2a23afSMatthew G. Knepley   PetscInt         n, i, off = 0;
92069a2a23afSMatthew G. Knepley 
92079a2a23afSMatthew G. Knepley   PetscFunctionBegin;
92089a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
92094f572ea9SToby Isaac   PetscAssertPointer(labels, 2);
92104f572ea9SToby Isaac   PetscAssertPointer(values, 3);
92114f572ea9SToby Isaac   PetscAssertPointer(parts, 4);
92129566063dSJacob Faibussowitsch   PetscCall(DMGetNumAuxiliaryVec(dm, &n));
92139566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &keys));
92149566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxGetKeys(dm->auxData, &off, keys));
92159371c9d4SSatish Balay   for (i = 0; i < n; ++i) {
92169371c9d4SSatish Balay     labels[i] = keys[i].label;
92179371c9d4SSatish Balay     values[i] = keys[i].value;
92189371c9d4SSatish Balay     parts[i]  = keys[i].part;
92199371c9d4SSatish Balay   }
92209566063dSJacob Faibussowitsch   PetscCall(PetscFree(keys));
92213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
92229a2a23afSMatthew G. Knepley }
92239a2a23afSMatthew G. Knepley 
92249a2a23afSMatthew G. Knepley /*@
9225bb7acecfSBarry Smith   DMCopyAuxiliaryVec - Copy the auxiliary vector data on a `DM` to a new `DM`
92269a2a23afSMatthew G. Knepley 
922720f4b53cSBarry Smith   Not Collective
92289a2a23afSMatthew G. Knepley 
92299a2a23afSMatthew G. Knepley   Input Parameter:
9230bb7acecfSBarry Smith . dm - The `DM`
92319a2a23afSMatthew G. Knepley 
92329a2a23afSMatthew G. Knepley   Output Parameter:
9233bb7acecfSBarry Smith . dmNew - The new `DM`, now with the same auxiliary data
92349a2a23afSMatthew G. Knepley 
92359a2a23afSMatthew G. Knepley   Level: advanced
92369a2a23afSMatthew G. Knepley 
9237bb7acecfSBarry Smith   Note:
9238bb7acecfSBarry Smith   This is a shallow copy of the auxiliary vectors
9239bb7acecfSBarry Smith 
9240e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`
92419a2a23afSMatthew G. Knepley @*/
9242d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyAuxiliaryVec(DM dm, DM dmNew)
9243d71ae5a4SJacob Faibussowitsch {
92449a2a23afSMatthew G. Knepley   PetscFunctionBegin;
92459a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9246d705d0eaSStefano Zampini   PetscValidHeaderSpecific(dmNew, DM_CLASSID, 2);
9247d705d0eaSStefano Zampini   if (dm == dmNew) PetscFunctionReturn(PETSC_SUCCESS);
9248e4d5475eSStefano Zampini   PetscCall(DMClearAuxiliaryVec(dmNew));
9249e4d5475eSStefano Zampini 
9250e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxDestroy(&dmNew->auxData));
92519566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxDuplicate(dm->auxData, &dmNew->auxData));
9252d705d0eaSStefano Zampini   {
9253d705d0eaSStefano Zampini     Vec     *auxData;
9254d705d0eaSStefano Zampini     PetscInt n, i, off = 0;
9255d705d0eaSStefano Zampini 
9256d705d0eaSStefano Zampini     PetscCall(PetscHMapAuxGetSize(dmNew->auxData, &n));
9257d705d0eaSStefano Zampini     PetscCall(PetscMalloc1(n, &auxData));
9258d705d0eaSStefano Zampini     PetscCall(PetscHMapAuxGetVals(dmNew->auxData, &off, auxData));
9259d705d0eaSStefano Zampini     for (i = 0; i < n; ++i) PetscCall(PetscObjectReference((PetscObject)auxData[i]));
9260d705d0eaSStefano Zampini     PetscCall(PetscFree(auxData));
9261e4d5475eSStefano Zampini   }
9262e4d5475eSStefano Zampini   PetscFunctionReturn(PETSC_SUCCESS);
9263e4d5475eSStefano Zampini }
9264e4d5475eSStefano Zampini 
9265e4d5475eSStefano Zampini /*@
9266e4d5475eSStefano Zampini   DMClearAuxiliaryVec - Destroys the auxiliary vector information and creates a new empty one
9267e4d5475eSStefano Zampini 
9268e4d5475eSStefano Zampini   Not Collective
9269e4d5475eSStefano Zampini 
9270e4d5475eSStefano Zampini   Input Parameter:
9271e4d5475eSStefano Zampini . dm - The `DM`
9272e4d5475eSStefano Zampini 
9273e4d5475eSStefano Zampini   Level: advanced
9274e4d5475eSStefano Zampini 
9275e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMCopyAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`
9276e4d5475eSStefano Zampini @*/
9277e4d5475eSStefano Zampini PetscErrorCode DMClearAuxiliaryVec(DM dm)
9278e4d5475eSStefano Zampini {
9279e4d5475eSStefano Zampini   Vec     *auxData;
9280e4d5475eSStefano Zampini   PetscInt n, i, off = 0;
9281e4d5475eSStefano Zampini 
9282e4d5475eSStefano Zampini   PetscFunctionBegin;
9283e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxGetSize(dm->auxData, &n));
9284d705d0eaSStefano Zampini   PetscCall(PetscMalloc1(n, &auxData));
9285e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxGetVals(dm->auxData, &off, auxData));
9286d705d0eaSStefano Zampini   for (i = 0; i < n; ++i) PetscCall(VecDestroy(&auxData[i]));
9287d705d0eaSStefano Zampini   PetscCall(PetscFree(auxData));
9288e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxDestroy(&dm->auxData));
9289e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxCreate(&dm->auxData));
92903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
92919a2a23afSMatthew G. Knepley }
9292b5a892a1SMatthew G. Knepley 
9293cc4c1da9SBarry Smith /*@
9294bb7acecfSBarry Smith   DMPolytopeMatchOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement
9295b5a892a1SMatthew G. Knepley 
929620f4b53cSBarry Smith   Not Collective
9297b5a892a1SMatthew G. Knepley 
9298b5a892a1SMatthew G. Knepley   Input Parameters:
9299bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9300b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces
9301b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces
9302b5a892a1SMatthew G. Knepley 
9303b5a892a1SMatthew G. Knepley   Output Parameters:
9304bb7acecfSBarry Smith + ornt  - The orientation (transformation) which will take the source arrangement to the target arrangement
9305b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found
9306b5a892a1SMatthew G. Knepley 
9307b5a892a1SMatthew G. Knepley   Level: advanced
9308b5a892a1SMatthew G. Knepley 
9309bb7acecfSBarry Smith   Note:
9310bb7acecfSBarry Smith   An arrangement is a face order combined with an orientation for each face
9311bb7acecfSBarry Smith 
931285036b15SMatthew G. Knepley   Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2
9313bb7acecfSBarry Smith   that labels each arrangement (face ordering plus orientation for each face).
9314bb7acecfSBarry Smith 
9315bb7acecfSBarry Smith   See `DMPolytopeMatchVertexOrientation()` to find a new vertex orientation that takes the source vertex arrangement to the target vertex arrangement
9316bb7acecfSBarry Smith 
93171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetVertexOrientation()`
9318b5a892a1SMatthew G. Knepley @*/
9319d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt, PetscBool *found)
9320d71ae5a4SJacob Faibussowitsch {
9321b5a892a1SMatthew G. Knepley   const PetscInt cS = DMPolytopeTypeGetConeSize(ct);
932285036b15SMatthew G. Knepley   const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2;
9323b5a892a1SMatthew G. Knepley   PetscInt       o, c;
9324b5a892a1SMatthew G. Knepley 
9325b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
93269371c9d4SSatish Balay   if (!nO) {
93279371c9d4SSatish Balay     *ornt  = 0;
93289371c9d4SSatish Balay     *found = PETSC_TRUE;
93293ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
93309371c9d4SSatish Balay   }
9331b5a892a1SMatthew G. Knepley   for (o = -nO; o < nO; ++o) {
933285036b15SMatthew G. Knepley     const PetscInt *arr = DMPolytopeTypeGetArrangement(ct, o);
9333b5a892a1SMatthew G. Knepley 
93349371c9d4SSatish Balay     for (c = 0; c < cS; ++c)
93359371c9d4SSatish Balay       if (sourceCone[arr[c * 2]] != targetCone[c]) break;
93369371c9d4SSatish Balay     if (c == cS) {
93379371c9d4SSatish Balay       *ornt = o;
93389371c9d4SSatish Balay       break;
93399371c9d4SSatish Balay     }
9340b5a892a1SMatthew G. Knepley   }
9341b5a892a1SMatthew G. Knepley   *found = o == nO ? PETSC_FALSE : PETSC_TRUE;
93423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9343b5a892a1SMatthew G. Knepley }
9344b5a892a1SMatthew G. Knepley 
9345cc4c1da9SBarry Smith /*@
9346bb7acecfSBarry Smith   DMPolytopeGetOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement
9347b5a892a1SMatthew G. Knepley 
934820f4b53cSBarry Smith   Not Collective
9349b5a892a1SMatthew G. Knepley 
9350b5a892a1SMatthew G. Knepley   Input Parameters:
9351bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9352b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces
9353b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces
9354b5a892a1SMatthew G. Knepley 
93552fe279fdSBarry Smith   Output Parameter:
9356bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement
9357b5a892a1SMatthew G. Knepley 
9358b5a892a1SMatthew G. Knepley   Level: advanced
9359b5a892a1SMatthew G. Knepley 
9360bb7acecfSBarry Smith   Note:
9361bb7acecfSBarry Smith   This function is the same as `DMPolytopeMatchOrientation()` except it will generate an error if no suitable orientation can be found.
9362bb7acecfSBarry Smith 
936373ff1848SBarry Smith   Developer Note:
9364bb7acecfSBarry Smith   It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchOrientation()` and error if none is found
9365bb7acecfSBarry Smith 
93661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchOrientation()`, `DMPolytopeGetVertexOrientation()`, `DMPolytopeMatchVertexOrientation()`
9367b5a892a1SMatthew G. Knepley @*/
9368d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt)
9369d71ae5a4SJacob Faibussowitsch {
9370b5a892a1SMatthew G. Knepley   PetscBool found;
9371b5a892a1SMatthew G. Knepley 
9372b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
93739566063dSJacob Faibussowitsch   PetscCall(DMPolytopeMatchOrientation(ct, sourceCone, targetCone, ornt, &found));
93747a8be351SBarry Smith   PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]);
93753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9376b5a892a1SMatthew G. Knepley }
9377b5a892a1SMatthew G. Knepley 
9378cc4c1da9SBarry Smith /*@
9379bb7acecfSBarry Smith   DMPolytopeMatchVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement
9380b5a892a1SMatthew G. Knepley 
938120f4b53cSBarry Smith   Not Collective
9382b5a892a1SMatthew G. Knepley 
9383b5a892a1SMatthew G. Knepley   Input Parameters:
9384bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9385b5a892a1SMatthew G. Knepley . sourceVert - The source arrangement of vertices
9386b5a892a1SMatthew G. Knepley - targetVert - The target arrangement of vertices
9387b5a892a1SMatthew G. Knepley 
9388b5a892a1SMatthew G. Knepley   Output Parameters:
9389bb7acecfSBarry Smith + ornt  - The orientation (transformation) which will take the source arrangement to the target arrangement
9390b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found
9391b5a892a1SMatthew G. Knepley 
9392b5a892a1SMatthew G. Knepley   Level: advanced
9393b5a892a1SMatthew G. Knepley 
939473ff1848SBarry Smith   Notes:
9395bb7acecfSBarry Smith   An arrangement is a vertex order
9396bb7acecfSBarry Smith 
939785036b15SMatthew G. Knepley   Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2
9398bb7acecfSBarry Smith   that labels each arrangement (vertex ordering).
9399bb7acecfSBarry Smith 
9400bb7acecfSBarry Smith   See `DMPolytopeMatchOrientation()` to find a new face orientation that takes the source face arrangement to the target face arrangement
9401bb7acecfSBarry Smith 
940285036b15SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchOrientation()`, `DMPolytopeTypeGetNumVertices()`, `DMPolytopeTypeGetVertexArrangement()`
9403b5a892a1SMatthew G. Knepley @*/
9404d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchVertexOrientation(DMPolytopeType ct, const PetscInt sourceVert[], const PetscInt targetVert[], PetscInt *ornt, PetscBool *found)
9405d71ae5a4SJacob Faibussowitsch {
9406b5a892a1SMatthew G. Knepley   const PetscInt cS = DMPolytopeTypeGetNumVertices(ct);
940785036b15SMatthew G. Knepley   const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2;
9408b5a892a1SMatthew G. Knepley   PetscInt       o, c;
9409b5a892a1SMatthew G. Knepley 
9410b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
94119371c9d4SSatish Balay   if (!nO) {
94129371c9d4SSatish Balay     *ornt  = 0;
94139371c9d4SSatish Balay     *found = PETSC_TRUE;
94143ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
94159371c9d4SSatish Balay   }
9416b5a892a1SMatthew G. Knepley   for (o = -nO; o < nO; ++o) {
941785036b15SMatthew G. Knepley     const PetscInt *arr = DMPolytopeTypeGetVertexArrangement(ct, o);
9418b5a892a1SMatthew G. Knepley 
94199371c9d4SSatish Balay     for (c = 0; c < cS; ++c)
94209371c9d4SSatish Balay       if (sourceVert[arr[c]] != targetVert[c]) break;
94219371c9d4SSatish Balay     if (c == cS) {
94229371c9d4SSatish Balay       *ornt = o;
94239371c9d4SSatish Balay       break;
94249371c9d4SSatish Balay     }
9425b5a892a1SMatthew G. Knepley   }
9426b5a892a1SMatthew G. Knepley   *found = o == nO ? PETSC_FALSE : PETSC_TRUE;
94273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9428b5a892a1SMatthew G. Knepley }
9429b5a892a1SMatthew G. Knepley 
9430cc4c1da9SBarry Smith /*@
9431bb7acecfSBarry Smith   DMPolytopeGetVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement
9432b5a892a1SMatthew G. Knepley 
943320f4b53cSBarry Smith   Not Collective
9434b5a892a1SMatthew G. Knepley 
9435b5a892a1SMatthew G. Knepley   Input Parameters:
9436bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9437b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of vertices
9438b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of vertices
9439b5a892a1SMatthew G. Knepley 
94402fe279fdSBarry Smith   Output Parameter:
9441bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement
9442b5a892a1SMatthew G. Knepley 
9443b5a892a1SMatthew G. Knepley   Level: advanced
9444b5a892a1SMatthew G. Knepley 
9445bb7acecfSBarry Smith   Note:
9446bb7acecfSBarry Smith   This function is the same as `DMPolytopeMatchVertexOrientation()` except it errors if not orientation is possible.
9447bb7acecfSBarry Smith 
944873ff1848SBarry Smith   Developer Note:
9449bb7acecfSBarry Smith   It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchVertexOrientation()` and error if none is found
9450bb7acecfSBarry Smith 
94511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetOrientation()`
9452b5a892a1SMatthew G. Knepley @*/
9453d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetVertexOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt)
9454d71ae5a4SJacob Faibussowitsch {
9455b5a892a1SMatthew G. Knepley   PetscBool found;
9456b5a892a1SMatthew G. Knepley 
9457b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
94589566063dSJacob Faibussowitsch   PetscCall(DMPolytopeMatchVertexOrientation(ct, sourceCone, targetCone, ornt, &found));
94597a8be351SBarry Smith   PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]);
94603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9461b5a892a1SMatthew G. Knepley }
9462012bc364SMatthew G. Knepley 
9463cc4c1da9SBarry Smith /*@
9464012bc364SMatthew G. Knepley   DMPolytopeInCellTest - Check whether a point lies inside the reference cell of given type
9465012bc364SMatthew G. Knepley 
946620f4b53cSBarry Smith   Not Collective
9467012bc364SMatthew G. Knepley 
9468012bc364SMatthew G. Knepley   Input Parameters:
9469bb7acecfSBarry Smith + ct    - The `DMPolytopeType`
9470012bc364SMatthew G. Knepley - point - Coordinates of the point
9471012bc364SMatthew G. Knepley 
94722fe279fdSBarry Smith   Output Parameter:
9473012bc364SMatthew G. Knepley . inside - Flag indicating whether the point is inside the reference cell of given type
9474012bc364SMatthew G. Knepley 
9475012bc364SMatthew G. Knepley   Level: advanced
9476012bc364SMatthew G. Knepley 
94771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMLocatePoints()`
9478012bc364SMatthew G. Knepley @*/
9479d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeInCellTest(DMPolytopeType ct, const PetscReal point[], PetscBool *inside)
9480d71ae5a4SJacob Faibussowitsch {
9481012bc364SMatthew G. Knepley   PetscReal sum = 0.0;
9482012bc364SMatthew G. Knepley   PetscInt  d;
9483012bc364SMatthew G. Knepley 
9484012bc364SMatthew G. Knepley   PetscFunctionBegin;
9485012bc364SMatthew G. Knepley   *inside = PETSC_TRUE;
9486012bc364SMatthew G. Knepley   switch (ct) {
9487012bc364SMatthew G. Knepley   case DM_POLYTOPE_TRIANGLE:
9488012bc364SMatthew G. Knepley   case DM_POLYTOPE_TETRAHEDRON:
9489012bc364SMatthew G. Knepley     for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) {
94909371c9d4SSatish Balay       if (point[d] < -1.0) {
94919371c9d4SSatish Balay         *inside = PETSC_FALSE;
94929371c9d4SSatish Balay         break;
94939371c9d4SSatish Balay       }
9494012bc364SMatthew G. Knepley       sum += point[d];
9495012bc364SMatthew G. Knepley     }
94969371c9d4SSatish Balay     if (sum > PETSC_SMALL) {
94979371c9d4SSatish Balay       *inside = PETSC_FALSE;
94989371c9d4SSatish Balay       break;
94999371c9d4SSatish Balay     }
9500012bc364SMatthew G. Knepley     break;
9501012bc364SMatthew G. Knepley   case DM_POLYTOPE_QUADRILATERAL:
9502012bc364SMatthew G. Knepley   case DM_POLYTOPE_HEXAHEDRON:
9503012bc364SMatthew G. Knepley     for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d)
95049371c9d4SSatish Balay       if (PetscAbsReal(point[d]) > 1. + PETSC_SMALL) {
95059371c9d4SSatish Balay         *inside = PETSC_FALSE;
9506012bc364SMatthew G. Knepley         break;
95079371c9d4SSatish Balay       }
95089371c9d4SSatish Balay     break;
9509d71ae5a4SJacob Faibussowitsch   default:
9510d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported polytope type %s", DMPolytopeTypes[ct]);
9511012bc364SMatthew G. Knepley   }
95123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9513012bc364SMatthew G. Knepley }
9514adc21957SMatthew G. Knepley 
9515adc21957SMatthew G. Knepley /*@
9516adc21957SMatthew G. Knepley   DMReorderSectionSetDefault - Set flag indicating whether the local section should be reordered by default
9517adc21957SMatthew G. Knepley 
9518adc21957SMatthew G. Knepley   Logically collective
9519adc21957SMatthew G. Knepley 
9520adc21957SMatthew G. Knepley   Input Parameters:
9521adc21957SMatthew G. Knepley + dm      - The DM
9522adc21957SMatthew G. Knepley - reorder - Flag for reordering
9523adc21957SMatthew G. Knepley 
9524adc21957SMatthew G. Knepley   Level: intermediate
9525adc21957SMatthew G. Knepley 
9526adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetDefault()`
9527adc21957SMatthew G. Knepley @*/
9528adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetDefault(DM dm, DMReorderDefaultFlag reorder)
9529adc21957SMatthew G. Knepley {
9530adc21957SMatthew G. Knepley   PetscFunctionBegin;
9531adc21957SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9532adc21957SMatthew G. Knepley   PetscTryMethod(dm, "DMReorderSectionSetDefault_C", (DM, DMReorderDefaultFlag), (dm, reorder));
9533adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
9534adc21957SMatthew G. Knepley }
9535adc21957SMatthew G. Knepley 
9536adc21957SMatthew G. Knepley /*@
9537adc21957SMatthew G. Knepley   DMReorderSectionGetDefault - Get flag indicating whether the local section should be reordered by default
9538adc21957SMatthew G. Knepley 
9539adc21957SMatthew G. Knepley   Not collective
9540adc21957SMatthew G. Knepley 
9541adc21957SMatthew G. Knepley   Input Parameter:
9542adc21957SMatthew G. Knepley . dm - The DM
9543adc21957SMatthew G. Knepley 
9544adc21957SMatthew G. Knepley   Output Parameter:
9545adc21957SMatthew G. Knepley . reorder - Flag for reordering
9546adc21957SMatthew G. Knepley 
9547adc21957SMatthew G. Knepley   Level: intermediate
9548adc21957SMatthew G. Knepley 
9549adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()`
9550adc21957SMatthew G. Knepley @*/
9551adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetDefault(DM dm, DMReorderDefaultFlag *reorder)
9552adc21957SMatthew G. Knepley {
9553adc21957SMatthew G. Knepley   PetscFunctionBegin;
9554adc21957SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9555adc21957SMatthew G. Knepley   PetscAssertPointer(reorder, 2);
9556adc21957SMatthew G. Knepley   *reorder = DM_REORDER_DEFAULT_NOTSET;
9557adc21957SMatthew G. Knepley   PetscTryMethod(dm, "DMReorderSectionGetDefault_C", (DM, DMReorderDefaultFlag *), (dm, reorder));
9558adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
9559adc21957SMatthew G. Knepley }
9560adc21957SMatthew G. Knepley 
9561cc4c1da9SBarry Smith /*@
9562adc21957SMatthew G. Knepley   DMReorderSectionSetType - Set the type of local section reordering
9563adc21957SMatthew G. Knepley 
9564adc21957SMatthew G. Knepley   Logically collective
9565adc21957SMatthew G. Knepley 
9566adc21957SMatthew G. Knepley   Input Parameters:
9567adc21957SMatthew G. Knepley + dm      - The DM
9568adc21957SMatthew G. Knepley - reorder - The reordering method
9569adc21957SMatthew G. Knepley 
9570adc21957SMatthew G. Knepley   Level: intermediate
9571adc21957SMatthew G. Knepley 
9572adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetType()`, `DMReorderSectionSetDefault()`
9573adc21957SMatthew G. Knepley @*/
9574adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetType(DM dm, MatOrderingType reorder)
9575adc21957SMatthew G. Knepley {
9576adc21957SMatthew G. Knepley   PetscFunctionBegin;
9577adc21957SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9578adc21957SMatthew G. Knepley   PetscTryMethod(dm, "DMReorderSectionSetType_C", (DM, MatOrderingType), (dm, reorder));
9579adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
9580adc21957SMatthew G. Knepley }
9581adc21957SMatthew G. Knepley 
9582cc4c1da9SBarry Smith /*@
9583adc21957SMatthew G. Knepley   DMReorderSectionGetType - Get the reordering type for the local section
9584adc21957SMatthew G. Knepley 
9585adc21957SMatthew G. Knepley   Not collective
9586adc21957SMatthew G. Knepley 
9587adc21957SMatthew G. Knepley   Input Parameter:
9588adc21957SMatthew G. Knepley . dm - The DM
9589adc21957SMatthew G. Knepley 
9590adc21957SMatthew G. Knepley   Output Parameter:
9591adc21957SMatthew G. Knepley . reorder - The reordering method
9592adc21957SMatthew G. Knepley 
9593adc21957SMatthew G. Knepley   Level: intermediate
9594adc21957SMatthew G. Knepley 
9595adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()`, `DMReorderSectionGetDefault()`
9596adc21957SMatthew G. Knepley @*/
9597adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetType(DM dm, MatOrderingType *reorder)
9598adc21957SMatthew G. Knepley {
9599adc21957SMatthew G. Knepley   PetscFunctionBegin;
9600adc21957SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9601adc21957SMatthew G. Knepley   PetscAssertPointer(reorder, 2);
9602adc21957SMatthew G. Knepley   *reorder = NULL;
9603adc21957SMatthew G. Knepley   PetscTryMethod(dm, "DMReorderSectionGetType_C", (DM, MatOrderingType *), (dm, reorder));
9604adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
9605adc21957SMatthew G. Knepley }
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