1d0295fc0SJunchao Zhang #include <petscvec.h> 2af0996ceSBarry Smith #include <petsc/private/dmimpl.h> /*I "petscdm.h" I*/ 3c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 4e6f8dbb6SToby Isaac #include <petsc/private/petscdsimpl.h> /*I "petscds.h" I*/ 53e922f36SToby Isaac #include <petscdmplex.h> 6d2b2dc1eSMatthew G. Knepley #include <petscdmceed.h> 7f19dbd58SToby Isaac #include <petscdmfield.h> 80c312b8eSJed Brown #include <petscsf.h> 92764a2aaSMatthew G. Knepley #include <petscds.h> 1047c6ae99SBarry Smith 11f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 12f918ec44SMatthew G. Knepley #include <petscfeceed.h> 13f918ec44SMatthew G. Knepley #endif 14f918ec44SMatthew G. Knepley 15cea3dcb8SSatish Balay #if !defined(PETSC_HAVE_WINDOWS_COMPILERS) 16cea3dcb8SSatish Balay #include <petsc/private/valgrind/memcheck.h> 1700d952a4SJed Brown #endif 1800d952a4SJed Brown 19732e2eb9SMatthew G Knepley PetscClassId DM_CLASSID; 20d67d17b1SMatthew G. Knepley PetscClassId DMLABEL_CLASSID; 21708be2fdSJed Brown PetscLogEvent DM_Convert, DM_GlobalToLocal, DM_LocalToGlobal, DM_LocalToLocal, DM_LocatePoints, DM_Coarsen, DM_Refine, DM_CreateInterpolation, DM_CreateRestriction, DM_CreateInjection, DM_CreateMatrix, DM_CreateMassMatrix, DM_Load, DM_AdaptInterpolator, DM_ProjectFunction; 2267a56275SMatthew G Knepley 23ea78f98cSLisandro Dalcin const char *const DMBoundaryTypes[] = {"NONE", "GHOSTED", "MIRROR", "PERIODIC", "TWIST", "DMBoundaryType", "DM_BOUNDARY_", NULL}; 24d1b3049bSMatthew G. Knepley const char *const DMBoundaryConditionTypes[] = {"INVALID", "ESSENTIAL", "NATURAL", "INVALID", "INVALID", "ESSENTIAL_FIELD", "NATURAL_FIELD", "INVALID", "INVALID", "ESSENTIAL_BD_FIELD", "NATURAL_RIEMANN", "DMBoundaryConditionType", "DM_BC_", NULL}; 250e762ea3SJed Brown const char *const DMBlockingTypes[] = {"TOPOLOGICAL_POINT", "FIELD_NODE", "DMBlockingType", "DM_BLOCKING_", NULL}; 26476787b7SMatthew G. Knepley const char *const DMPolytopeTypes[] = 27476787b7SMatthew G. Knepley {"vertex", "segment", "tensor_segment", "triangle", "quadrilateral", "tensor_quad", "tetrahedron", "hexahedron", "triangular_prism", "tensor_triangular_prism", "tensor_quadrilateral_prism", "pyramid", "FV_ghost_cell", "interior_ghost_cell", 28476787b7SMatthew G. Knepley "unknown", "unknown_cell", "unknown_face", "invalid", "DMPolytopeType", "DM_POLYTOPE_", NULL}; 292cbb9b06SVaclav Hapla const char *const DMCopyLabelsModes[] = {"replace", "keep", "fail", "DMCopyLabelsMode", "DM_COPY_LABELS_", NULL}; 3060c22052SBarry Smith 31a4121054SBarry Smith /*@ 32bb7acecfSBarry Smith DMCreate - Creates an empty `DM` object. `DM`s are the abstract objects in PETSc that mediate between meshes and discretizations and the 33bb7acecfSBarry Smith algebraic solvers, time integrators, and optimization algorithms. 34a4121054SBarry Smith 35d083f849SBarry Smith Collective 36a4121054SBarry Smith 37a4121054SBarry Smith Input Parameter: 38bb7acecfSBarry Smith . comm - The communicator for the `DM` object 39a4121054SBarry Smith 40a4121054SBarry Smith Output Parameter: 41bb7acecfSBarry Smith . dm - The `DM` object 42a4121054SBarry Smith 43a4121054SBarry Smith Level: beginner 44a4121054SBarry Smith 45bb7acecfSBarry Smith Notes: 46bb7acecfSBarry Smith See `DMType` for a brief summary of available `DM`. 47bb7acecfSBarry Smith 48bb7acecfSBarry Smith The type must then be set with `DMSetType()`. If you never call `DMSetType()` it will generate an 49bb7acecfSBarry Smith error when you try to use the dm. 50bb7acecfSBarry Smith 511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMType`, `DMDACreate()`, `DMDA`, `DMSLICED`, `DMCOMPOSITE`, `DMPLEX`, `DMMOAB`, `DMNETWORK` 52a4121054SBarry Smith @*/ 53d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreate(MPI_Comm comm, DM *dm) 54d71ae5a4SJacob Faibussowitsch { 55a4121054SBarry Smith DM v; 56e5e52638SMatthew G. Knepley PetscDS ds; 57a4121054SBarry Smith 58a4121054SBarry Smith PetscFunctionBegin; 594f572ea9SToby Isaac PetscAssertPointer(dm, 2); 600298fd71SBarry Smith *dm = NULL; 619566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 62a4121054SBarry Smith 639566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(v, DM_CLASSID, "DM", "Distribution Manager", "DM", comm, DMDestroy, DMView)); 64e7c4fc90SDmitry Karpeev 6562e5d2d2SJDBetteridge ((PetscObject)v)->non_cyclic_references = &DMCountNonCyclicReferences; 6662e5d2d2SJDBetteridge 6749be4549SMatthew G. Knepley v->setupcalled = PETSC_FALSE; 6849be4549SMatthew G. Knepley v->setfromoptionscalled = PETSC_FALSE; 690298fd71SBarry Smith v->ltogmap = NULL; 70a4ea9b21SRichard Tran Mills v->bind_below = 0; 711411c6eeSJed Brown v->bs = 1; 72171400e9SBarry Smith v->coloringtype = IS_COLORING_GLOBAL; 739566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sf)); 749566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sectionSF)); 75c58f1c22SToby Isaac v->labels = NULL; 7634aa8a36SMatthew G. Knepley v->adjacency[0] = PETSC_FALSE; 7734aa8a36SMatthew G. Knepley v->adjacency[1] = PETSC_TRUE; 78c58f1c22SToby Isaac v->depthLabel = NULL; 79ba2698f1SMatthew G. Knepley v->celltypeLabel = NULL; 801bb6d2a8SBarry Smith v->localSection = NULL; 811bb6d2a8SBarry Smith v->globalSection = NULL; 823b8ba7d1SJed Brown v->defaultConstraint.section = NULL; 833b8ba7d1SJed Brown v->defaultConstraint.mat = NULL; 8479769bd5SJed Brown v->defaultConstraint.bias = NULL; 856858538eSMatthew G. Knepley v->coordinates[0].dim = PETSC_DEFAULT; 866858538eSMatthew G. Knepley v->coordinates[1].dim = PETSC_DEFAULT; 876858538eSMatthew G. Knepley v->sparseLocalize = PETSC_TRUE; 8896173672SStefano Zampini v->dim = PETSC_DETERMINE; 89435a35e8SMatthew G Knepley { 90435a35e8SMatthew G Knepley PetscInt i; 91435a35e8SMatthew G Knepley for (i = 0; i < 10; ++i) { 920298fd71SBarry Smith v->nullspaceConstructors[i] = NULL; 93f9d4088aSMatthew G. Knepley v->nearnullspaceConstructors[i] = NULL; 94435a35e8SMatthew G Knepley } 95435a35e8SMatthew G Knepley } 969566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 9707218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(v, NULL, NULL, ds, NULL)); 989566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 999566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxCreate(&v->auxData)); 10014f150ffSMatthew G. Knepley v->dmBC = NULL; 101a8fb8f29SToby Isaac v->coarseMesh = NULL; 102f4d763aaSMatthew G. Knepley v->outputSequenceNum = -1; 103cdb7a50dSMatthew G. Knepley v->outputSequenceVal = 0.0; 1049566063dSJacob Faibussowitsch PetscCall(DMSetVecType(v, VECSTANDARD)); 1059566063dSJacob Faibussowitsch PetscCall(DMSetMatType(v, MATAIJ)); 1064a7a4c06SLawrence Mitchell 1071411c6eeSJed Brown *dm = v; 1083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 109a4121054SBarry Smith } 110a4121054SBarry Smith 11138221697SMatthew G. Knepley /*@ 112bb7acecfSBarry Smith DMClone - Creates a `DM` object with the same topology as the original. 11338221697SMatthew G. Knepley 114d083f849SBarry Smith Collective 11538221697SMatthew G. Knepley 11638221697SMatthew G. Knepley Input Parameter: 117bb7acecfSBarry Smith . dm - The original `DM` object 11838221697SMatthew G. Knepley 11938221697SMatthew G. Knepley Output Parameter: 120bb7acecfSBarry Smith . newdm - The new `DM` object 12138221697SMatthew G. Knepley 12238221697SMatthew G. Knepley Level: beginner 12338221697SMatthew G. Knepley 1241cb8cacdSPatrick Sanan Notes: 125bb7acecfSBarry Smith For some `DM` implementations this is a shallow clone, the result of which may share (reference counted) information with its parent. For example, 126bb7acecfSBarry Smith `DMClone()` applied to a `DMPLEX` object will result in a new `DMPLEX` that shares the topology with the original `DMPLEX`. It does not 127bb7acecfSBarry Smith share the `PetscSection` of the original `DM`. 1281bb6d2a8SBarry Smith 129bb7acecfSBarry Smith The clone is considered set up if the original has been set up. 13089706ed2SPatrick Sanan 131bb7acecfSBarry Smith Use `DMConvert()` for a general way to create new `DM` from a given `DM` 132bb7acecfSBarry Smith 13360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMSetType()`, `DMSetLocalSection()`, `DMSetGlobalSection()`, `DMPLEX`, `DMConvert()` 13438221697SMatthew G. Knepley @*/ 135d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClone(DM dm, DM *newdm) 136d71ae5a4SJacob Faibussowitsch { 13738221697SMatthew G. Knepley PetscSF sf; 13838221697SMatthew G. Knepley Vec coords; 13938221697SMatthew G. Knepley void *ctx; 140ec196627SMatthew G. Knepley MatOrderingType otype; 141ec196627SMatthew G. Knepley DMReorderDefaultFlag flg; 1426858538eSMatthew G. Knepley PetscInt dim, cdim, i; 14338221697SMatthew G. Knepley 14438221697SMatthew G. Knepley PetscFunctionBegin; 14538221697SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1464f572ea9SToby Isaac PetscAssertPointer(newdm, 2); 1479566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), newdm)); 1489566063dSJacob Faibussowitsch PetscCall(DMCopyLabels(dm, *newdm, PETSC_COPY_VALUES, PETSC_TRUE, DM_COPY_LABELS_FAIL)); 149ddf8437dSMatthew G. Knepley (*newdm)->leveldown = dm->leveldown; 150ddf8437dSMatthew G. Knepley (*newdm)->levelup = dm->levelup; 151c8a6034eSMark (*newdm)->prealloc_only = dm->prealloc_only; 152fc214432SJed Brown (*newdm)->prealloc_skip = dm->prealloc_skip; 1539566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->vectype)); 1549566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*newdm)->vectype)); 1559566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->mattype)); 1569566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*newdm)->mattype)); 1579566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 1589566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*newdm, dim)); 159dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, clone, newdm); 1603f22bcbcSToby Isaac (*newdm)->setupcalled = dm->setupcalled; 1619566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 1629566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*newdm, sf)); 1639566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dm, &ctx)); 1649566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(*newdm, ctx)); 165ec196627SMatthew G. Knepley PetscCall(DMReorderSectionGetDefault(dm, &flg)); 166ec196627SMatthew G. Knepley PetscCall(DMReorderSectionSetDefault(*newdm, flg)); 167ec196627SMatthew G. Knepley PetscCall(DMReorderSectionGetType(dm, &otype)); 168ec196627SMatthew G. Knepley PetscCall(DMReorderSectionSetType(*newdm, otype)); 1696858538eSMatthew G. Knepley for (i = 0; i < 2; ++i) { 1706858538eSMatthew G. Knepley if (dm->coordinates[i].dm) { 171be4c1c3eSMatthew G. Knepley DM ncdm; 172be4c1c3eSMatthew G. Knepley PetscSection cs; 1735a0206caSToby Isaac PetscInt pEnd = -1, pEndMax = -1; 174be4c1c3eSMatthew G. Knepley 1756858538eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm->coordinates[i].dm, &cs)); 1769566063dSJacob Faibussowitsch if (cs) PetscCall(PetscSectionGetChart(cs, NULL, &pEnd)); 177712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(&pEnd, &pEndMax, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 1785a0206caSToby Isaac if (pEndMax >= 0) { 1796858538eSMatthew G. Knepley PetscCall(DMClone(dm->coordinates[i].dm, &ncdm)); 1806858538eSMatthew G. Knepley PetscCall(DMCopyDisc(dm->coordinates[i].dm, ncdm)); 1819566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(ncdm, cs)); 1825e50ca95SJames Wright if (dm->coordinates[i].dm->periodic.setup) { 1835e50ca95SJames Wright ncdm->periodic.setup = dm->coordinates[i].dm->periodic.setup; 1845e50ca95SJames Wright PetscCall(ncdm->periodic.setup(ncdm)); 1855e50ca95SJames Wright } 1866858538eSMatthew G. Knepley if (i) PetscCall(DMSetCellCoordinateDM(*newdm, ncdm)); 1876858538eSMatthew G. Knepley else PetscCall(DMSetCoordinateDM(*newdm, ncdm)); 1889566063dSJacob Faibussowitsch PetscCall(DMDestroy(&ncdm)); 189be4c1c3eSMatthew G. Knepley } 190be4c1c3eSMatthew G. Knepley } 1916858538eSMatthew G. Knepley } 1929566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 1939566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*newdm, cdim)); 1949566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coords)); 19538221697SMatthew G. Knepley if (coords) { 1969566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(*newdm, coords)); 19738221697SMatthew G. Knepley } else { 1989566063dSJacob Faibussowitsch PetscCall(DMGetCoordinates(dm, &coords)); 1999566063dSJacob Faibussowitsch if (coords) PetscCall(DMSetCoordinates(*newdm, coords)); 20038221697SMatthew G. Knepley } 2016858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinatesLocal(dm, &coords)); 2026858538eSMatthew G. Knepley if (coords) { 2036858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinatesLocal(*newdm, coords)); 2046858538eSMatthew G. Knepley } else { 2056858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinates(dm, &coords)); 2066858538eSMatthew G. Knepley if (coords) PetscCall(DMSetCellCoordinates(*newdm, coords)); 2076858538eSMatthew G. Knepley } 20890b157c4SStefano Zampini { 2094fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 2106858538eSMatthew G. Knepley 2114fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 2124fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*newdm, maxCell, Lstart, L)); 213c6b900c6SMatthew G. Knepley } 21434aa8a36SMatthew G. Knepley { 21534aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 21634aa8a36SMatthew G. Knepley 2179566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, &useCone, &useClosure)); 2189566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(*newdm, PETSC_DEFAULT, useCone, useClosure)); 21934aa8a36SMatthew G. Knepley } 2203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 22138221697SMatthew G. Knepley } 22238221697SMatthew G. Knepley 2239a42bb27SBarry Smith /*@C 224bb7acecfSBarry Smith DMSetVecType - Sets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 2259a42bb27SBarry Smith 22620f4b53cSBarry Smith Logically Collective 2279a42bb27SBarry Smith 228147403d9SBarry Smith Input Parameters: 22932546409SMatthew G. Knepley + dm - initial distributed array 230bb7acecfSBarry Smith - ctype - the vector type, for example `VECSTANDARD`, `VECCUDA`, or `VECVIENNACL` 2319a42bb27SBarry Smith 23220f4b53cSBarry Smith Options Database Key: 233147403d9SBarry Smith . -dm_vec_type ctype - the type of vector to create 2349a42bb27SBarry Smith 2359a42bb27SBarry Smith Level: intermediate 2369a42bb27SBarry Smith 23760225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMGetVecType()`, `DMSetMatType()`, `DMGetMatType()`, 238bb7acecfSBarry Smith `VECSTANDARD`, `VECCUDA`, `VECVIENNACL`, `DMCreateLocalVector()`, `DMCreateGlobalVector()` 2399a42bb27SBarry Smith @*/ 24032546409SMatthew G. Knepley PetscErrorCode DMSetVecType(DM dm, VecType ctype) 241d71ae5a4SJacob Faibussowitsch { 24232546409SMatthew G. Knepley char *tmp; 24332546409SMatthew G. Knepley 2449a42bb27SBarry Smith PetscFunctionBegin; 24532546409SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 24632546409SMatthew G. Knepley PetscAssertPointer(ctype, 2); 24732546409SMatthew G. Knepley tmp = (char *)dm->vectype; 24832546409SMatthew G. Knepley PetscCall(PetscStrallocpy(ctype, (char **)&dm->vectype)); 24932546409SMatthew G. Knepley PetscCall(PetscFree(tmp)); 2503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2519a42bb27SBarry Smith } 2529a42bb27SBarry Smith 253c0dedaeaSBarry Smith /*@C 254bb7acecfSBarry Smith DMGetVecType - Gets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 255c0dedaeaSBarry Smith 25620f4b53cSBarry Smith Logically Collective 257c0dedaeaSBarry Smith 258c0dedaeaSBarry Smith Input Parameter: 259c0dedaeaSBarry Smith . da - initial distributed array 260c0dedaeaSBarry Smith 261c0dedaeaSBarry Smith Output Parameter: 262c0dedaeaSBarry Smith . ctype - the vector type 263c0dedaeaSBarry Smith 264c0dedaeaSBarry Smith Level: intermediate 265c0dedaeaSBarry Smith 26660225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMSetMatType()`, `DMGetMatType()`, `DMSetVecType()` 267c0dedaeaSBarry Smith @*/ 268d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetVecType(DM da, VecType *ctype) 269d71ae5a4SJacob Faibussowitsch { 270c0dedaeaSBarry Smith PetscFunctionBegin; 271c0dedaeaSBarry Smith PetscValidHeaderSpecific(da, DM_CLASSID, 1); 272c0dedaeaSBarry Smith *ctype = da->vectype; 2733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 274c0dedaeaSBarry Smith } 275c0dedaeaSBarry Smith 2765f1ad066SMatthew G Knepley /*@ 277bb7acecfSBarry Smith VecGetDM - Gets the `DM` defining the data layout of the vector 2785f1ad066SMatthew G Knepley 27920f4b53cSBarry Smith Not Collective 2805f1ad066SMatthew G Knepley 2815f1ad066SMatthew G Knepley Input Parameter: 282bb7acecfSBarry Smith . v - The `Vec` 2835f1ad066SMatthew G Knepley 2845f1ad066SMatthew G Knepley Output Parameter: 285bb7acecfSBarry Smith . dm - The `DM` 2865f1ad066SMatthew G Knepley 2875f1ad066SMatthew G Knepley Level: intermediate 2885f1ad066SMatthew G Knepley 289bb7acecfSBarry Smith Note: 290bb7acecfSBarry Smith A `Vec` may not have a `DM` associated with it. 291bb7acecfSBarry Smith 2921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecSetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 2935f1ad066SMatthew G Knepley @*/ 294d71ae5a4SJacob Faibussowitsch PetscErrorCode VecGetDM(Vec v, DM *dm) 295d71ae5a4SJacob Faibussowitsch { 2965f1ad066SMatthew G Knepley PetscFunctionBegin; 2975f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 2984f572ea9SToby Isaac PetscAssertPointer(dm, 2); 2999566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)v, "__PETSc_dm", (PetscObject *)dm)); 3003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3015f1ad066SMatthew G Knepley } 3025f1ad066SMatthew G Knepley 3035f1ad066SMatthew G Knepley /*@ 304bb7acecfSBarry Smith VecSetDM - Sets the `DM` defining the data layout of the vector. 3055f1ad066SMatthew G Knepley 30620f4b53cSBarry Smith Not Collective 3075f1ad066SMatthew G Knepley 3085f1ad066SMatthew G Knepley Input Parameters: 309bb7acecfSBarry Smith + v - The `Vec` 310bb7acecfSBarry Smith - dm - The `DM` 3115f1ad066SMatthew G Knepley 31220f4b53cSBarry Smith Level: developer 31320f4b53cSBarry Smith 31473ff1848SBarry Smith Notes: 315bb7acecfSBarry Smith This is rarely used, generally one uses `DMGetLocalVector()` or `DMGetGlobalVector()` to create a vector associated with a given `DM` 316d9805387SMatthew G. Knepley 317bb7acecfSBarry Smith This is NOT the same as `DMCreateGlobalVector()` since it does not change the view methods or perform other customization, but merely sets the `DM` member. 318bb7acecfSBarry Smith 3191cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecGetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 3205f1ad066SMatthew G Knepley @*/ 321d71ae5a4SJacob Faibussowitsch PetscErrorCode VecSetDM(Vec v, DM dm) 322d71ae5a4SJacob Faibussowitsch { 3235f1ad066SMatthew G Knepley PetscFunctionBegin; 3245f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 325d7f50e27SLisandro Dalcin if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 3269566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)v, "__PETSc_dm", (PetscObject)dm)); 3273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3285f1ad066SMatthew G Knepley } 3295f1ad066SMatthew G Knepley 330521d9a4cSLisandro Dalcin /*@C 331bb7acecfSBarry Smith DMSetISColoringType - Sets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 3328f1509bcSBarry Smith 33320f4b53cSBarry Smith Logically Collective 3348f1509bcSBarry Smith 3358f1509bcSBarry Smith Input Parameters: 336bb7acecfSBarry Smith + dm - the `DM` context 3378f1509bcSBarry Smith - ctype - the matrix type 3388f1509bcSBarry Smith 33920f4b53cSBarry Smith Options Database Key: 3408f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3418f1509bcSBarry Smith 3428f1509bcSBarry Smith Level: intermediate 3438f1509bcSBarry Smith 3441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 345bb7acecfSBarry Smith `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3468f1509bcSBarry Smith @*/ 347d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetISColoringType(DM dm, ISColoringType ctype) 348d71ae5a4SJacob Faibussowitsch { 3498f1509bcSBarry Smith PetscFunctionBegin; 3508f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3518f1509bcSBarry Smith dm->coloringtype = ctype; 3523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3538f1509bcSBarry Smith } 3548f1509bcSBarry Smith 3558f1509bcSBarry Smith /*@C 356bb7acecfSBarry Smith DMGetISColoringType - Gets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 357521d9a4cSLisandro Dalcin 35820f4b53cSBarry Smith Logically Collective 359521d9a4cSLisandro Dalcin 360521d9a4cSLisandro Dalcin Input Parameter: 361bb7acecfSBarry Smith . dm - the `DM` context 3628f1509bcSBarry Smith 3638f1509bcSBarry Smith Output Parameter: 3648f1509bcSBarry Smith . ctype - the matrix type 3658f1509bcSBarry Smith 36620f4b53cSBarry Smith Options Database Key: 3678f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3688f1509bcSBarry Smith 3698f1509bcSBarry Smith Level: intermediate 3708f1509bcSBarry Smith 3711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 37242747ad1SJacob Faibussowitsch `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3738f1509bcSBarry Smith @*/ 374d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetISColoringType(DM dm, ISColoringType *ctype) 375d71ae5a4SJacob Faibussowitsch { 3768f1509bcSBarry Smith PetscFunctionBegin; 3778f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3788f1509bcSBarry Smith *ctype = dm->coloringtype; 3793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3808f1509bcSBarry Smith } 3818f1509bcSBarry Smith 3828f1509bcSBarry Smith /*@C 383bb7acecfSBarry Smith DMSetMatType - Sets the type of matrix created with `DMCreateMatrix()` 3848f1509bcSBarry Smith 38520f4b53cSBarry Smith Logically Collective 3868f1509bcSBarry Smith 3878f1509bcSBarry Smith Input Parameters: 388bb7acecfSBarry Smith + dm - the `DM` context 389bb7acecfSBarry Smith - ctype - the matrix type, for example `MATMPIAIJ` 390521d9a4cSLisandro Dalcin 39120f4b53cSBarry Smith Options Database Key: 392bb7acecfSBarry Smith . -dm_mat_type ctype - the type of the matrix to create, for example mpiaij 393521d9a4cSLisandro Dalcin 394521d9a4cSLisandro Dalcin Level: intermediate 395521d9a4cSLisandro Dalcin 39642747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatType`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMGetMatType()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()` 397521d9a4cSLisandro Dalcin @*/ 398d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatType(DM dm, MatType ctype) 399d71ae5a4SJacob Faibussowitsch { 40032546409SMatthew G. Knepley char *tmp; 40132546409SMatthew G. Knepley 402521d9a4cSLisandro Dalcin PetscFunctionBegin; 403521d9a4cSLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 40432546409SMatthew G. Knepley PetscAssertPointer(ctype, 2); 40532546409SMatthew G. Knepley tmp = (char *)dm->mattype; 4069566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(ctype, (char **)&dm->mattype)); 40732546409SMatthew G. Knepley PetscCall(PetscFree(tmp)); 4083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 409521d9a4cSLisandro Dalcin } 410521d9a4cSLisandro Dalcin 411c0dedaeaSBarry Smith /*@C 41220f4b53cSBarry Smith DMGetMatType - Gets the type of matrix that would be created with `DMCreateMatrix()` 413c0dedaeaSBarry Smith 41420f4b53cSBarry Smith Logically Collective 415c0dedaeaSBarry Smith 416c0dedaeaSBarry Smith Input Parameter: 417bb7acecfSBarry Smith . dm - the `DM` context 418c0dedaeaSBarry Smith 419c0dedaeaSBarry Smith Output Parameter: 420c0dedaeaSBarry Smith . ctype - the matrix type 421c0dedaeaSBarry Smith 422c0dedaeaSBarry Smith Level: intermediate 423c0dedaeaSBarry Smith 42442747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMSetMatType()` 425c0dedaeaSBarry Smith @*/ 426d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetMatType(DM dm, MatType *ctype) 427d71ae5a4SJacob Faibussowitsch { 428c0dedaeaSBarry Smith PetscFunctionBegin; 429c0dedaeaSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 430c0dedaeaSBarry Smith *ctype = dm->mattype; 4313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 432c0dedaeaSBarry Smith } 433c0dedaeaSBarry Smith 434c688c046SMatthew G Knepley /*@ 435bb7acecfSBarry Smith MatGetDM - Gets the `DM` defining the data layout of the matrix 436c688c046SMatthew G Knepley 43720f4b53cSBarry Smith Not Collective 438c688c046SMatthew G Knepley 439c688c046SMatthew G Knepley Input Parameter: 440bb7acecfSBarry Smith . A - The `Mat` 441c688c046SMatthew G Knepley 442c688c046SMatthew G Knepley Output Parameter: 443bb7acecfSBarry Smith . dm - The `DM` 444c688c046SMatthew G Knepley 445c688c046SMatthew G Knepley Level: intermediate 446c688c046SMatthew G Knepley 447bb7acecfSBarry Smith Note: 448bb7acecfSBarry Smith A matrix may not have a `DM` associated with it 449bb7acecfSBarry Smith 45073ff1848SBarry Smith Developer Note: 451bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with the `Mat` through a `PetscObjectCompose()` operation 4528f1509bcSBarry Smith 4531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatSetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 454c688c046SMatthew G Knepley @*/ 455d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDM(Mat A, DM *dm) 456d71ae5a4SJacob Faibussowitsch { 457c688c046SMatthew G Knepley PetscFunctionBegin; 458c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4594f572ea9SToby Isaac PetscAssertPointer(dm, 2); 4609566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_dm", (PetscObject *)dm)); 4613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 462c688c046SMatthew G Knepley } 463c688c046SMatthew G Knepley 464c688c046SMatthew G Knepley /*@ 465bb7acecfSBarry Smith MatSetDM - Sets the `DM` defining the data layout of the matrix 466c688c046SMatthew G Knepley 46720f4b53cSBarry Smith Not Collective 468c688c046SMatthew G Knepley 469c688c046SMatthew G Knepley Input Parameters: 47020f4b53cSBarry Smith + A - The `Mat` 47120f4b53cSBarry Smith - dm - The `DM` 472c688c046SMatthew G Knepley 473bb7acecfSBarry Smith Level: developer 474c688c046SMatthew G Knepley 475bb7acecfSBarry Smith Note: 476bb7acecfSBarry Smith This is rarely used in practice, rather `DMCreateMatrix()` is used to create a matrix associated with a particular `DM` 477bb7acecfSBarry Smith 47873ff1848SBarry Smith Developer Note: 479bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with 480bb7acecfSBarry Smith the `Mat` through a `PetscObjectCompose()` operation 4818f1509bcSBarry Smith 4821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatGetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 483c688c046SMatthew G Knepley @*/ 484d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetDM(Mat A, DM dm) 485d71ae5a4SJacob Faibussowitsch { 486c688c046SMatthew G Knepley PetscFunctionBegin; 487c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4888865f1eaSKarl Rupp if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 4899566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_dm", (PetscObject)dm)); 4903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 491c688c046SMatthew G Knepley } 492c688c046SMatthew G Knepley 4939a42bb27SBarry Smith /*@C 494bb7acecfSBarry Smith DMSetOptionsPrefix - Sets the prefix prepended to all option names when searching through the options database 4959a42bb27SBarry Smith 49620f4b53cSBarry Smith Logically Collective 4979a42bb27SBarry Smith 498d8d19677SJose E. Roman Input Parameters: 49960225df5SJacob Faibussowitsch + dm - the `DM` context 500bb7acecfSBarry Smith - prefix - the prefix to prepend 5019a42bb27SBarry Smith 50220f4b53cSBarry Smith Level: advanced 50320f4b53cSBarry Smith 50420f4b53cSBarry Smith Note: 5059a42bb27SBarry Smith A hyphen (-) must NOT be given at the beginning of the prefix name. 5069a42bb27SBarry Smith The first character of all runtime options is AUTOMATICALLY the hyphen. 5079a42bb27SBarry Smith 5081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscObjectSetOptionsPrefix()`, `DMSetFromOptions()` 5099a42bb27SBarry Smith @*/ 510d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOptionsPrefix(DM dm, const char prefix[]) 511d71ae5a4SJacob Faibussowitsch { 5129a42bb27SBarry Smith PetscFunctionBegin; 5139a42bb27SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5149566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, prefix)); 5151baa6e33SBarry Smith if (dm->sf) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sf, prefix)); 5161baa6e33SBarry Smith if (dm->sectionSF) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sectionSF, prefix)); 5173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5189a42bb27SBarry Smith } 5199a42bb27SBarry Smith 52031697293SDave May /*@C 521da81f932SPierre Jolivet DMAppendOptionsPrefix - Appends an additional string to an already existing prefix used for searching for 522bb7acecfSBarry Smith `DM` options in the options database. 52331697293SDave May 52420f4b53cSBarry Smith Logically Collective 52531697293SDave May 52631697293SDave May Input Parameters: 527bb7acecfSBarry Smith + dm - the `DM` context 528bb7acecfSBarry Smith - prefix - the string to append to the current prefix 52931697293SDave May 53020f4b53cSBarry Smith Level: advanced 53120f4b53cSBarry Smith 53220f4b53cSBarry Smith Note: 533bb7acecfSBarry Smith If the `DM` does not currently have an options prefix then this value is used alone as the prefix as if `DMSetOptionsPrefix()` had been called. 53431697293SDave May A hyphen (-) must NOT be given at the beginning of the prefix name. 53531697293SDave May The first character of all runtime options is AUTOMATICALLY the hyphen. 53631697293SDave May 5371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMGetOptionsPrefix()`, `PetscObjectAppendOptionsPrefix()`, `DMSetFromOptions()` 53831697293SDave May @*/ 539d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAppendOptionsPrefix(DM dm, const char prefix[]) 540d71ae5a4SJacob Faibussowitsch { 54131697293SDave May PetscFunctionBegin; 54231697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5439566063dSJacob Faibussowitsch PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, prefix)); 5443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 54531697293SDave May } 54631697293SDave May 54731697293SDave May /*@C 54831697293SDave May DMGetOptionsPrefix - Gets the prefix used for searching for all 549bb7acecfSBarry Smith DM options in the options database. 55031697293SDave May 55131697293SDave May Not Collective 55231697293SDave May 5532fe279fdSBarry Smith Input Parameter: 554bb7acecfSBarry Smith . dm - the `DM` context 55531697293SDave May 5562fe279fdSBarry Smith Output Parameter: 55731697293SDave May . prefix - pointer to the prefix string used is returned 55831697293SDave May 55931697293SDave May Level: advanced 56031697293SDave May 56173ff1848SBarry Smith Fortran Note: 56220f4b53cSBarry Smith Pass in a string 'prefix' of 56320f4b53cSBarry Smith sufficient length to hold the prefix. 56420f4b53cSBarry Smith 5651cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMAppendOptionsPrefix()`, `DMSetFromOptions()` 56631697293SDave May @*/ 567d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOptionsPrefix(DM dm, const char *prefix[]) 568d71ae5a4SJacob Faibussowitsch { 56931697293SDave May PetscFunctionBegin; 57031697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5719566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, prefix)); 5723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57331697293SDave May } 57431697293SDave May 57562e5d2d2SJDBetteridge static PetscErrorCode DMCountNonCyclicReferences_Internal(DM dm, PetscBool recurseCoarse, PetscBool recurseFine, PetscInt *ncrefct) 576d71ae5a4SJacob Faibussowitsch { 5776eb26441SStefano Zampini PetscInt refct = ((PetscObject)dm)->refct; 57888bdff64SToby Isaac 57988bdff64SToby Isaac PetscFunctionBegin; 580aab5bcd8SJed Brown *ncrefct = 0; 58188bdff64SToby Isaac if (dm->coarseMesh && dm->coarseMesh->fineMesh == dm) { 58288bdff64SToby Isaac refct--; 58388bdff64SToby Isaac if (recurseCoarse) { 58488bdff64SToby Isaac PetscInt coarseCount; 58588bdff64SToby Isaac 58662e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->coarseMesh, PETSC_TRUE, PETSC_FALSE, &coarseCount)); 58788bdff64SToby Isaac refct += coarseCount; 58888bdff64SToby Isaac } 58988bdff64SToby Isaac } 59088bdff64SToby Isaac if (dm->fineMesh && dm->fineMesh->coarseMesh == dm) { 59188bdff64SToby Isaac refct--; 59288bdff64SToby Isaac if (recurseFine) { 59388bdff64SToby Isaac PetscInt fineCount; 59488bdff64SToby Isaac 59562e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->fineMesh, PETSC_FALSE, PETSC_TRUE, &fineCount)); 59688bdff64SToby Isaac refct += fineCount; 59788bdff64SToby Isaac } 59888bdff64SToby Isaac } 59988bdff64SToby Isaac *ncrefct = refct; 6003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 60188bdff64SToby Isaac } 60288bdff64SToby Isaac 60362e5d2d2SJDBetteridge /* Generic wrapper for DMCountNonCyclicReferences_Internal() */ 60462e5d2d2SJDBetteridge PetscErrorCode DMCountNonCyclicReferences(PetscObject dm, PetscInt *ncrefct) 60562e5d2d2SJDBetteridge { 60662e5d2d2SJDBetteridge PetscFunctionBegin; 60762e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal((DM)dm, PETSC_TRUE, PETSC_TRUE, ncrefct)); 6083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 60962e5d2d2SJDBetteridge } 61062e5d2d2SJDBetteridge 611d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyLabelLinkList_Internal(DM dm) 612d71ae5a4SJacob Faibussowitsch { 6135d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 614354557abSToby Isaac 615354557abSToby Isaac PetscFunctionBegin; 616354557abSToby Isaac /* destroy the labels */ 617354557abSToby Isaac while (next) { 618354557abSToby Isaac DMLabelLink tmp = next->next; 619354557abSToby Isaac 6205d80c0bfSVaclav Hapla if (next->label == dm->depthLabel) dm->depthLabel = NULL; 621ba2698f1SMatthew G. Knepley if (next->label == dm->celltypeLabel) dm->celltypeLabel = NULL; 6229566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 6239566063dSJacob Faibussowitsch PetscCall(PetscFree(next)); 624354557abSToby Isaac next = tmp; 625354557abSToby Isaac } 6265d80c0bfSVaclav Hapla dm->labels = NULL; 6273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 628354557abSToby Isaac } 629354557abSToby Isaac 63066976f2fSJacob Faibussowitsch static PetscErrorCode DMDestroyCoordinates_Private(DMCoordinates *c) 631d71ae5a4SJacob Faibussowitsch { 6326858538eSMatthew G. Knepley PetscFunctionBegin; 6336858538eSMatthew G. Knepley c->dim = PETSC_DEFAULT; 6346858538eSMatthew G. Knepley PetscCall(DMDestroy(&c->dm)); 6356858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->x)); 6366858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->xl)); 6376858538eSMatthew G. Knepley PetscCall(DMFieldDestroy(&c->field)); 6383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6396858538eSMatthew G. Knepley } 6406858538eSMatthew G. Knepley 6411fb7b255SJunchao Zhang /*@C 642bb7acecfSBarry Smith DMDestroy - Destroys a `DM`. 64347c6ae99SBarry Smith 64420f4b53cSBarry Smith Collective 64547c6ae99SBarry Smith 64647c6ae99SBarry Smith Input Parameter: 647bb7acecfSBarry Smith . dm - the `DM` object to destroy 64847c6ae99SBarry Smith 64947c6ae99SBarry Smith Level: developer 65047c6ae99SBarry Smith 6511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMType`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 65247c6ae99SBarry Smith @*/ 653d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroy(DM *dm) 654d71ae5a4SJacob Faibussowitsch { 6556eb26441SStefano Zampini PetscInt cnt; 65647c6ae99SBarry Smith 65747c6ae99SBarry Smith PetscFunctionBegin; 6583ba16761SJacob Faibussowitsch if (!*dm) PetscFunctionReturn(PETSC_SUCCESS); 659f4f49eeaSPierre Jolivet PetscValidHeaderSpecific(*dm, DM_CLASSID, 1); 66087e657c6SBarry Smith 66188bdff64SToby Isaac /* count all non-cyclic references in the doubly-linked list of coarse<->fine meshes */ 66262e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(*dm, PETSC_TRUE, PETSC_TRUE, &cnt)); 663f4f49eeaSPierre Jolivet --((PetscObject)*dm)->refct; 6649371c9d4SSatish Balay if (--cnt > 0) { 6659371c9d4SSatish Balay *dm = NULL; 6663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6679371c9d4SSatish Balay } 668f4f49eeaSPierre Jolivet if (((PetscObject)*dm)->refct < 0) PetscFunctionReturn(PETSC_SUCCESS); 669f4f49eeaSPierre Jolivet ((PetscObject)*dm)->refct = 0; 6706eb26441SStefano Zampini 6719566063dSJacob Faibussowitsch PetscCall(DMClearGlobalVectors(*dm)); 6729566063dSJacob Faibussowitsch PetscCall(DMClearLocalVectors(*dm)); 673974ca4ecSStefano Zampini PetscCall(DMClearNamedGlobalVectors(*dm)); 674974ca4ecSStefano Zampini PetscCall(DMClearNamedLocalVectors(*dm)); 6752348bcf4SPeter Brune 676b17ce1afSJed Brown /* Destroy the list of hooks */ 677c833c3b5SJed Brown { 678c833c3b5SJed Brown DMCoarsenHookLink link, next; 679b17ce1afSJed Brown for (link = (*dm)->coarsenhook; link; link = next) { 680b17ce1afSJed Brown next = link->next; 6819566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 682b17ce1afSJed Brown } 6830298fd71SBarry Smith (*dm)->coarsenhook = NULL; 684c833c3b5SJed Brown } 685c833c3b5SJed Brown { 686c833c3b5SJed Brown DMRefineHookLink link, next; 687c833c3b5SJed Brown for (link = (*dm)->refinehook; link; link = next) { 688c833c3b5SJed Brown next = link->next; 6899566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 690c833c3b5SJed Brown } 6910298fd71SBarry Smith (*dm)->refinehook = NULL; 692c833c3b5SJed Brown } 693be081cd6SPeter Brune { 694be081cd6SPeter Brune DMSubDomainHookLink link, next; 695be081cd6SPeter Brune for (link = (*dm)->subdomainhook; link; link = next) { 696be081cd6SPeter Brune next = link->next; 6979566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 698be081cd6SPeter Brune } 6990298fd71SBarry Smith (*dm)->subdomainhook = NULL; 700be081cd6SPeter Brune } 701baf369e7SPeter Brune { 702baf369e7SPeter Brune DMGlobalToLocalHookLink link, next; 703baf369e7SPeter Brune for (link = (*dm)->gtolhook; link; link = next) { 704baf369e7SPeter Brune next = link->next; 7059566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 706baf369e7SPeter Brune } 7070298fd71SBarry Smith (*dm)->gtolhook = NULL; 708baf369e7SPeter Brune } 709d4d07f1eSToby Isaac { 710d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, next; 711d4d07f1eSToby Isaac for (link = (*dm)->ltoghook; link; link = next) { 712d4d07f1eSToby Isaac next = link->next; 7139566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 714d4d07f1eSToby Isaac } 715d4d07f1eSToby Isaac (*dm)->ltoghook = NULL; 716d4d07f1eSToby Isaac } 717aa1993deSMatthew G Knepley /* Destroy the work arrays */ 718aa1993deSMatthew G Knepley { 719aa1993deSMatthew G Knepley DMWorkLink link, next; 720936381afSPierre Jolivet PetscCheck(!(*dm)->workout, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Work array still checked out %p %p", (void *)(*dm)->workout, (void *)(*dm)->workout->mem); 721aa1993deSMatthew G Knepley for (link = (*dm)->workin; link; link = next) { 722aa1993deSMatthew G Knepley next = link->next; 7239566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 7249566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 725aa1993deSMatthew G Knepley } 7260298fd71SBarry Smith (*dm)->workin = NULL; 727aa1993deSMatthew G Knepley } 728c58f1c22SToby Isaac /* destroy the labels */ 7299566063dSJacob Faibussowitsch PetscCall(DMDestroyLabelLinkList_Internal(*dm)); 730f4cdcedcSVaclav Hapla /* destroy the fields */ 7319566063dSJacob Faibussowitsch PetscCall(DMClearFields(*dm)); 732f4cdcedcSVaclav Hapla /* destroy the boundaries */ 733e6f8dbb6SToby Isaac { 734e6f8dbb6SToby Isaac DMBoundary next = (*dm)->boundary; 735e6f8dbb6SToby Isaac while (next) { 736e6f8dbb6SToby Isaac DMBoundary b = next; 737e6f8dbb6SToby Isaac 738e6f8dbb6SToby Isaac next = b->next; 7399566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 740e6f8dbb6SToby Isaac } 741e6f8dbb6SToby Isaac } 742b17ce1afSJed Brown 7439566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmksp)); 7449566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmsnes)); 7459566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmts)); 74652536dc3SBarry Smith 74748a46eb9SPierre Jolivet if ((*dm)->ctx && (*dm)->ctxdestroy) PetscCall((*(*dm)->ctxdestroy)(&(*dm)->ctx)); 7489566063dSJacob Faibussowitsch PetscCall(MatFDColoringDestroy(&(*dm)->fd)); 7499566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&(*dm)->ltogmap)); 7509566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->vectype)); 7519566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->mattype)); 75288ed4aceSMatthew G Knepley 7539566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->localSection)); 7549566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->globalSection)); 755adc21957SMatthew G. Knepley PetscCall(PetscFree((*dm)->reorderSectionType)); 7569566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&(*dm)->map)); 7579566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->defaultConstraint.section)); 7589566063dSJacob Faibussowitsch PetscCall(MatDestroy(&(*dm)->defaultConstraint.mat)); 7599566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sf)); 7609566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sectionSF)); 76148a46eb9SPierre Jolivet if ((*dm)->sfNatural) PetscCall(PetscSFDestroy(&(*dm)->sfNatural)); 7629566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)(*dm)->sfMigration)); 763e4d5475eSStefano Zampini PetscCall(DMClearAuxiliaryVec(*dm)); 7649566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDestroy(&(*dm)->auxData)); 76548a46eb9SPierre Jolivet if ((*dm)->coarseMesh && (*dm)->coarseMesh->fineMesh == *dm) PetscCall(DMSetFineDM((*dm)->coarseMesh, NULL)); 7666eb26441SStefano Zampini 7679566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->coarseMesh)); 76848a46eb9SPierre Jolivet if ((*dm)->fineMesh && (*dm)->fineMesh->coarseMesh == *dm) PetscCall(DMSetCoarseDM((*dm)->fineMesh, NULL)); 7699566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->fineMesh)); 7704fb89dddSMatthew G. Knepley PetscCall(PetscFree((*dm)->Lstart)); 7719566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->L)); 7729566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->maxCell)); 7736858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[0])); 7746858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[1])); 7759566063dSJacob Faibussowitsch if ((*dm)->transformDestroy) PetscCall((*(*dm)->transformDestroy)(*dm, (*dm)->transformCtx)); 7769566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->transformDM)); 7779566063dSJacob Faibussowitsch PetscCall(VecDestroy(&(*dm)->transform)); 778ddedc8f6SJames Wright for (PetscInt i = 0; i < (*dm)->periodic.num_affines; i++) { 779ddedc8f6SJames Wright PetscCall(VecScatterDestroy(&(*dm)->periodic.affine_to_local[i])); 780ddedc8f6SJames Wright PetscCall(VecDestroy(&(*dm)->periodic.affine[i])); 781ddedc8f6SJames Wright } 782ddedc8f6SJames Wright if ((*dm)->periodic.num_affines > 0) PetscCall(PetscFree2((*dm)->periodic.affine_to_local, (*dm)->periodic.affine)); 7836636e97aSMatthew G Knepley 7849566063dSJacob Faibussowitsch PetscCall(DMClearDS(*dm)); 7859566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->dmBC)); 786e04113cfSBarry Smith /* if memory was published with SAWs then destroy it */ 7879566063dSJacob Faibussowitsch PetscCall(PetscObjectSAWsViewOff((PetscObject)*dm)); 788732e2eb9SMatthew G Knepley 789213acdd3SPierre Jolivet PetscTryTypeMethod(*dm, destroy); 7909566063dSJacob Faibussowitsch PetscCall(DMMonitorCancel(*dm)); 791d2b2dc1eSMatthew G. Knepley PetscCall(DMCeedDestroy(&(*dm)->dmceed)); 792f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 7939566063dSJacob Faibussowitsch PetscCallCEED(CeedElemRestrictionDestroy(&(*dm)->ceedERestrict)); 7949566063dSJacob Faibussowitsch PetscCallCEED(CeedDestroy(&(*dm)->ceed)); 795f918ec44SMatthew G. Knepley #endif 796435a35e8SMatthew G Knepley /* We do not destroy (*dm)->data here so that we can reference count backend objects */ 7979566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(dm)); 7983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 79947c6ae99SBarry Smith } 80047c6ae99SBarry Smith 801d7bf68aeSBarry Smith /*@ 802bb7acecfSBarry Smith DMSetUp - sets up the data structures inside a `DM` object 803d7bf68aeSBarry Smith 80420f4b53cSBarry Smith Collective 805d7bf68aeSBarry Smith 806d7bf68aeSBarry Smith Input Parameter: 807bb7acecfSBarry Smith . dm - the `DM` object to setup 808d7bf68aeSBarry Smith 809bb7acecfSBarry Smith Level: intermediate 810d7bf68aeSBarry Smith 811bb7acecfSBarry Smith Note: 812bb7acecfSBarry Smith This is usually called after various parameter setting operations and `DMSetFromOptions()` are called on the `DM` 813bb7acecfSBarry Smith 8141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 815d7bf68aeSBarry Smith @*/ 816d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUp(DM dm) 817d71ae5a4SJacob Faibussowitsch { 818d7bf68aeSBarry Smith PetscFunctionBegin; 819171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8203ba16761SJacob Faibussowitsch if (dm->setupcalled) PetscFunctionReturn(PETSC_SUCCESS); 821dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setup); 8228387afaaSJed Brown dm->setupcalled = PETSC_TRUE; 8233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 824d7bf68aeSBarry Smith } 825d7bf68aeSBarry Smith 826d7bf68aeSBarry Smith /*@ 827bb7acecfSBarry Smith DMSetFromOptions - sets parameters in a `DM` from the options database 828d7bf68aeSBarry Smith 82920f4b53cSBarry Smith Collective 830d7bf68aeSBarry Smith 831d7bf68aeSBarry Smith Input Parameter: 832bb7acecfSBarry Smith . dm - the `DM` object to set options for 833d7bf68aeSBarry Smith 83420f4b53cSBarry Smith Options Database Keys: 835bb7acecfSBarry Smith + -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 836bb7acecfSBarry Smith . -dm_vec_type <type> - type of vector to create inside `DM` 837bb7acecfSBarry Smith . -dm_mat_type <type> - type of matrix to create inside `DM` 838a4ea9b21SRichard Tran Mills . -dm_is_coloring_type - <global or local> 83920f4b53cSBarry Smith . -dm_bind_below <n> - bind (force execution on CPU) for `Vec` and `Mat` objects with local size (number of vector entries or matrix rows) below n; currently only supported for `DMDA` 84020f4b53cSBarry Smith . -dm_plex_filename <str> - File containing a mesh 8419318fe57SMatthew G. Knepley . -dm_plex_boundary_filename <str> - File containing a mesh boundary 842cd7e8a5eSksagiyam . -dm_plex_name <str> - Name of the mesh in the file 8435dca41c3SJed Brown . -dm_plex_shape <shape> - The domain shape, such as `BOX`, `SPHERE`, etc. 8449318fe57SMatthew G. Knepley . -dm_plex_cell <ct> - Cell shape 8459318fe57SMatthew G. Knepley . -dm_plex_reference_cell_domain <bool> - Use a reference cell domain 8469318fe57SMatthew G. Knepley . -dm_plex_dim <dim> - Set the topological dimension 847bb7acecfSBarry Smith . -dm_plex_simplex <bool> - `PETSC_TRUE` for simplex elements, `PETSC_FALSE` for tensor elements 848bb7acecfSBarry Smith . -dm_plex_interpolate <bool> - `PETSC_TRUE` turns on topological interpolation (creating edges and faces) 8499318fe57SMatthew G. Knepley . -dm_plex_scale <sc> - Scale factor for mesh coordinates 850be664eb1SMatthew G. Knepley . -dm_coord_remap <bool> - Map coordinates using a function 851be664eb1SMatthew G. Knepley . -dm_coord_map <mapname> - Select a builtin coordinate map 852be664eb1SMatthew G. Knepley . -dm_coord_map_params <p0,p1,p2,...> - Set coordinate mapping parameters 8539318fe57SMatthew G. Knepley . -dm_plex_box_faces <m,n,p> - Number of faces along each dimension 8549318fe57SMatthew G. Knepley . -dm_plex_box_lower <x,y,z> - Specify lower-left-bottom coordinates for the box 8559318fe57SMatthew G. Knepley . -dm_plex_box_upper <x,y,z> - Specify upper-right-top coordinates for the box 856bb7acecfSBarry Smith . -dm_plex_box_bd <bx,by,bz> - Specify the `DMBoundaryType` for each direction 8579318fe57SMatthew G. Knepley . -dm_plex_sphere_radius <r> - The sphere radius 8589318fe57SMatthew G. Knepley . -dm_plex_ball_radius <r> - Radius of the ball 8599318fe57SMatthew G. Knepley . -dm_plex_cylinder_bd <bz> - Boundary type in the z direction 8609318fe57SMatthew G. Knepley . -dm_plex_cylinder_num_wedges <n> - Number of wedges around the cylinder 861bdf63967SMatthew G. Knepley . -dm_plex_reorder <order> - Reorder the mesh using the specified algorithm 8629318fe57SMatthew G. Knepley . -dm_refine_pre <n> - The number of refinements before distribution 8639318fe57SMatthew G. Knepley . -dm_refine_uniform_pre <bool> - Flag for uniform refinement before distribution 8649318fe57SMatthew G. Knepley . -dm_refine_volume_limit_pre <v> - The maximum cell volume after refinement before distribution 8659318fe57SMatthew G. Knepley . -dm_refine <n> - The number of refinements after distribution 866bdf63967SMatthew G. Knepley . -dm_extrude <l> - Activate extrusion and specify the number of layers to extrude 867d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thickness <t> - The total thickness of extruded layers 868d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_use_tensor <bool> - Use tensor cells when extruding 869d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_symmetric <bool> - Extrude layers symmetrically about the surface 870d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_normal <n0,...,nd> - Specify the extrusion direction 871d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thicknesses <t0,...,tl> - Specify thickness of each layer 872909dfd52SMatthew G. Knepley . -dm_plex_create_fv_ghost_cells - Flag to create finite volume ghost cells on the boundary 873909dfd52SMatthew G. Knepley . -dm_plex_fv_ghost_cells_label <name> - Label name for ghost cells boundary 8749318fe57SMatthew G. Knepley . -dm_distribute <bool> - Flag to redistribute a mesh among processes 8759318fe57SMatthew G. Knepley . -dm_distribute_overlap <n> - The size of the overlap halo 8769318fe57SMatthew G. Knepley . -dm_plex_adj_cone <bool> - Set adjacency direction 87720f4b53cSBarry Smith . -dm_plex_adj_closure <bool> - Set adjacency size 878d2b2dc1eSMatthew G. Knepley . -dm_plex_use_ceed <bool> - Use LibCEED as the FEM backend 87920f4b53cSBarry Smith . -dm_plex_check_symmetry - Check that the adjacency information in the mesh is symmetric - `DMPlexCheckSymmetry()` 880bb7acecfSBarry Smith . -dm_plex_check_skeleton - Check that each cell has the correct number of vertices (only for homogeneous simplex or tensor meshes) - `DMPlexCheckSkeleton()` 881bb7acecfSBarry Smith . -dm_plex_check_faces - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type - `DMPlexCheckFaces()` 882bb7acecfSBarry Smith . -dm_plex_check_geometry - Check that cells have positive volume - `DMPlexCheckGeometry()` 883bb7acecfSBarry Smith . -dm_plex_check_pointsf - Check some necessary conditions for `PointSF` - `DMPlexCheckPointSF()` 884bb7acecfSBarry Smith . -dm_plex_check_interface_cones - Check points on inter-partition interfaces have conforming order of cone points - `DMPlexCheckInterfaceCones()` 885384a6580SVaclav Hapla - -dm_plex_check_all - Perform all the checks above 886d7bf68aeSBarry Smith 88795eb5ee5SVaclav Hapla Level: intermediate 88895eb5ee5SVaclav Hapla 8891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 890bb7acecfSBarry Smith `DMPlexCheckSymmetry()`, `DMPlexCheckSkeleton()`, `DMPlexCheckFaces()`, `DMPlexCheckGeometry()`, `DMPlexCheckPointSF()`, `DMPlexCheckInterfaceCones()`, 89160225df5SJacob Faibussowitsch `DMSetOptionsPrefix()`, `DMType`, `DMPLEX`, `DMDA` 892d7bf68aeSBarry Smith @*/ 893d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFromOptions(DM dm) 894d71ae5a4SJacob Faibussowitsch { 8957781c08eSBarry Smith char typeName[256]; 896ca266f36SBarry Smith PetscBool flg; 897d7bf68aeSBarry Smith 898d7bf68aeSBarry Smith PetscFunctionBegin; 899171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 90049be4549SMatthew G. Knepley dm->setfromoptionscalled = PETSC_TRUE; 9019566063dSJacob Faibussowitsch if (dm->sf) PetscCall(PetscSFSetFromOptions(dm->sf)); 9029566063dSJacob Faibussowitsch if (dm->sectionSF) PetscCall(PetscSFSetFromOptions(dm->sectionSF)); 903dd4c3f67SMatthew G. Knepley if (dm->coordinates[0].dm) PetscCall(DMSetFromOptions(dm->coordinates[0].dm)); 904d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)dm); 9059566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_preallocate_only", "only preallocate matrix, but do not set column indices", "DMSetMatrixPreallocateOnly", dm->prealloc_only, &dm->prealloc_only, NULL)); 9069566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_vec_type", "Vector type used for created vectors", "DMSetVecType", VecList, dm->vectype, typeName, 256, &flg)); 9071baa6e33SBarry Smith if (flg) PetscCall(DMSetVecType(dm, typeName)); 9089566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_mat_type", "Matrix type used for created matrices", "DMSetMatType", MatList, dm->mattype ? dm->mattype : typeName, typeName, sizeof(typeName), &flg)); 9091baa6e33SBarry Smith if (flg) PetscCall(DMSetMatType(dm, typeName)); 910863027abSJed Brown PetscCall(PetscOptionsEnum("-dm_blocking_type", "Topological point or field node blocking", "DMSetBlockingType", DMBlockingTypes, (PetscEnum)dm->blocking_type, (PetscEnum *)&dm->blocking_type, NULL)); 9119566063dSJacob Faibussowitsch PetscCall(PetscOptionsEnum("-dm_is_coloring_type", "Global or local coloring of Jacobian", "DMSetISColoringType", ISColoringTypes, (PetscEnum)dm->coloringtype, (PetscEnum *)&dm->coloringtype, NULL)); 9129566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-dm_bind_below", "Set the size threshold (in entries) below which the Vec is bound to the CPU", "VecBindToCPU", dm->bind_below, &dm->bind_below, &flg)); 913eb9d3e4dSMatthew G. Knepley PetscCall(PetscOptionsBool("-dm_ignore_perm_output", "Ignore the local section permutation on output", "DMGetOutputDM", dm->ignorePermOutput, &dm->ignorePermOutput, NULL)); 914dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setfromoptions, PetscOptionsObject); 915f9ba7244SBarry Smith /* process any options handlers added with PetscObjectAddOptionsHandler() */ 916dbbe0bcdSBarry Smith PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)dm, PetscOptionsObject)); 917d0609cedSBarry Smith PetscOptionsEnd(); 9183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 919d7bf68aeSBarry Smith } 920d7bf68aeSBarry Smith 921fc9bc008SSatish Balay /*@C 922bb7acecfSBarry Smith DMViewFromOptions - View a `DM` in a particular way based on a request in the options database 923fe2efc57SMark 92420f4b53cSBarry Smith Collective 925fe2efc57SMark 926fe2efc57SMark Input Parameters: 927bb7acecfSBarry Smith + dm - the `DM` object 92820f4b53cSBarry Smith . obj - optional object that provides the prefix for the options database (if `NULL` then the prefix in obj is used) 92960225df5SJacob Faibussowitsch - name - option string that is used to activate viewing 930fe2efc57SMark 931fe2efc57SMark Level: intermediate 932bb7acecfSBarry Smith 933bb7acecfSBarry Smith Note: 934bb7acecfSBarry Smith See `PetscObjectViewFromOptions()` for a list of values that can be provided in the options database to determine how the `DM` is viewed 935bb7acecfSBarry Smith 93660225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `PetscObjectViewFromOptions()`, `DMCreate()` 937fe2efc57SMark @*/ 938d71ae5a4SJacob Faibussowitsch PetscErrorCode DMViewFromOptions(DM dm, PetscObject obj, const char name[]) 939d71ae5a4SJacob Faibussowitsch { 940fe2efc57SMark PetscFunctionBegin; 941fe2efc57SMark PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9429566063dSJacob Faibussowitsch PetscCall(PetscObjectViewFromOptions((PetscObject)dm, obj, name)); 9433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 944fe2efc57SMark } 945fe2efc57SMark 946fe2efc57SMark /*@C 947bb7acecfSBarry Smith DMView - Views a `DM`. Depending on the `PetscViewer` and its `PetscViewerFormat` it may print some ASCII information about the `DM` to the screen or a file or 948bb7acecfSBarry Smith save the `DM` in a binary file to be loaded later or create a visualization of the `DM` 94947c6ae99SBarry Smith 95020f4b53cSBarry Smith Collective 95147c6ae99SBarry Smith 952d8d19677SJose E. Roman Input Parameters: 953bb7acecfSBarry Smith + dm - the `DM` object to view 95447c6ae99SBarry Smith - v - the viewer 95547c6ae99SBarry Smith 95620f4b53cSBarry Smith Level: beginner 95720f4b53cSBarry Smith 95873ff1848SBarry Smith Note: 959bb7acecfSBarry Smith Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` as the `PetscViewerFormat` one can save multiple `DMPLEX` 960bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 961bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 962cd7e8a5eSksagiyam 9631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewer`, `PetscViewerFormat`, `PetscViewerSetFormat()`, `DMDestroy()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMLoad()`, `PetscObjectSetName()` 96447c6ae99SBarry Smith @*/ 965d71ae5a4SJacob Faibussowitsch PetscErrorCode DMView(DM dm, PetscViewer v) 966d71ae5a4SJacob Faibussowitsch { 96732c0f0efSBarry Smith PetscBool isbinary; 96876a8abe0SBarry Smith PetscMPIInt size; 96976a8abe0SBarry Smith PetscViewerFormat format; 97047c6ae99SBarry Smith 97147c6ae99SBarry Smith PetscFunctionBegin; 972171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 97348a46eb9SPierre Jolivet if (!v) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &v)); 974b1b135c8SBarry Smith PetscValidHeaderSpecific(v, PETSC_VIEWER_CLASSID, 2); 97574903a4fSStefano Zampini /* Ideally, we would like to have this test on. 97674903a4fSStefano Zampini However, it currently breaks socket viz via GLVis. 97774903a4fSStefano Zampini During DMView(parallel_mesh,glvis_viewer), each 97874903a4fSStefano Zampini process opens a sequential ASCII socket to visualize 97974903a4fSStefano Zampini the local mesh, and PetscObjectView(dm,local_socket) 98074903a4fSStefano Zampini is internally called inside VecView_GLVis, incurring 98174903a4fSStefano Zampini in an error here */ 98274903a4fSStefano Zampini /* PetscCheckSameComm(dm,1,v,2); */ 9839566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckWritable(v)); 984b1b135c8SBarry Smith 9859566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(v, &format)); 9869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 9873ba16761SJacob Faibussowitsch if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(PETSC_SUCCESS); 9889566063dSJacob Faibussowitsch PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)dm, v)); 9899566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)v, PETSCVIEWERBINARY, &isbinary)); 99032c0f0efSBarry Smith if (isbinary) { 99155849f57SBarry Smith PetscInt classid = DM_FILE_CLASSID; 99232c0f0efSBarry Smith char type[256]; 99332c0f0efSBarry Smith 9949566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, &classid, 1, PETSC_INT)); 995c6a7a370SJeremy L Thompson PetscCall(PetscStrncpy(type, ((PetscObject)dm)->type_name, sizeof(type))); 9969566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, type, 256, PETSC_CHAR)); 99732c0f0efSBarry Smith } 998dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, view, v); 9993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 100047c6ae99SBarry Smith } 100147c6ae99SBarry Smith 100247c6ae99SBarry Smith /*@ 1003bb7acecfSBarry Smith DMCreateGlobalVector - Creates a global vector from a `DM` object. A global vector is a parallel vector that has no duplicate values shared between MPI ranks, 1004bb7acecfSBarry Smith that is it has no ghost locations. 100547c6ae99SBarry Smith 100620f4b53cSBarry Smith Collective 100747c6ae99SBarry Smith 100847c6ae99SBarry Smith Input Parameter: 1009bb7acecfSBarry Smith . dm - the `DM` object 101047c6ae99SBarry Smith 101147c6ae99SBarry Smith Output Parameter: 101247c6ae99SBarry Smith . vec - the global vector 101347c6ae99SBarry Smith 1014073dac72SJed Brown Level: beginner 101547c6ae99SBarry Smith 10161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1017bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 101847c6ae99SBarry Smith @*/ 1019d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateGlobalVector(DM dm, Vec *vec) 1020d71ae5a4SJacob Faibussowitsch { 102147c6ae99SBarry Smith PetscFunctionBegin; 1022171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10234f572ea9SToby Isaac PetscAssertPointer(vec, 2); 1024dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createglobalvector, vec); 102576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1026c6b011d8SStefano Zampini DM vdm; 1027c6b011d8SStefano Zampini 10289566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10297a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1030c6b011d8SStefano Zampini } 10313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 103247c6ae99SBarry Smith } 103347c6ae99SBarry Smith 103447c6ae99SBarry Smith /*@ 1035bb7acecfSBarry Smith DMCreateLocalVector - Creates a local vector from a `DM` object. 103647c6ae99SBarry Smith 103747c6ae99SBarry Smith Not Collective 103847c6ae99SBarry Smith 103947c6ae99SBarry Smith Input Parameter: 1040bb7acecfSBarry Smith . dm - the `DM` object 104147c6ae99SBarry Smith 104247c6ae99SBarry Smith Output Parameter: 104347c6ae99SBarry Smith . vec - the local vector 104447c6ae99SBarry Smith 1045073dac72SJed Brown Level: beginner 104647c6ae99SBarry Smith 104720f4b53cSBarry Smith Note: 1048bb7acecfSBarry Smith A local vector usually has ghost locations that contain values that are owned by different MPI ranks. A global vector has no ghost locations. 1049bb7acecfSBarry Smith 10501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 1051bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 105247c6ae99SBarry Smith @*/ 1053d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLocalVector(DM dm, Vec *vec) 1054d71ae5a4SJacob Faibussowitsch { 105547c6ae99SBarry Smith PetscFunctionBegin; 1056171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10574f572ea9SToby Isaac PetscAssertPointer(vec, 2); 1058dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalvector, vec); 105976bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1060c6b011d8SStefano Zampini DM vdm; 1061c6b011d8SStefano Zampini 10629566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10637a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_LIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1064c6b011d8SStefano Zampini } 10653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 106647c6ae99SBarry Smith } 106747c6ae99SBarry Smith 10681411c6eeSJed Brown /*@ 1069bb7acecfSBarry Smith DMGetLocalToGlobalMapping - Accesses the local-to-global mapping in a `DM`. 10701411c6eeSJed Brown 107120f4b53cSBarry Smith Collective 10721411c6eeSJed Brown 10731411c6eeSJed Brown Input Parameter: 1074bb7acecfSBarry Smith . dm - the `DM` that provides the mapping 10751411c6eeSJed Brown 10761411c6eeSJed Brown Output Parameter: 10771411c6eeSJed Brown . ltog - the mapping 10781411c6eeSJed Brown 1079bb7acecfSBarry Smith Level: advanced 10801411c6eeSJed Brown 10811411c6eeSJed Brown Notes: 1082bb7acecfSBarry Smith The global to local mapping allows one to set values into the global vector or matrix using `VecSetValuesLocal()` and `MatSetValuesLocal()` 10831411c6eeSJed Brown 1084bb7acecfSBarry Smith Vectors obtained with `DMCreateGlobalVector()` and matrices obtained with `DMCreateMatrix()` already contain the global mapping so you do 1085bb7acecfSBarry Smith need to use this function with those objects. 1086bb7acecfSBarry Smith 1087bb7acecfSBarry Smith This mapping can then be used by `VecSetLocalToGlobalMapping()` or `MatSetLocalToGlobalMapping()`. 1088bb7acecfSBarry Smith 108960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `VecSetLocalToGlobalMapping()`, `MatSetLocalToGlobalMapping()`, 1090bb7acecfSBarry Smith `DMCreateMatrix()` 10911411c6eeSJed Brown @*/ 1092d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalToGlobalMapping(DM dm, ISLocalToGlobalMapping *ltog) 1093d71ae5a4SJacob Faibussowitsch { 10940be3e97aSMatthew G. Knepley PetscInt bs = -1, bsLocal[2], bsMinMax[2]; 10951411c6eeSJed Brown 10961411c6eeSJed Brown PetscFunctionBegin; 10971411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10984f572ea9SToby Isaac PetscAssertPointer(ltog, 2); 10991411c6eeSJed Brown if (!dm->ltogmap) { 110037d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 110137d0c07bSMatthew G Knepley 11029566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 110337d0c07bSMatthew G Knepley if (section) { 1104a974ec88SMatthew G. Knepley const PetscInt *cdofs; 110537d0c07bSMatthew G Knepley PetscInt *ltog; 1106ccf3bd66SMatthew G. Knepley PetscInt pStart, pEnd, n, p, k, l; 110737d0c07bSMatthew G Knepley 11089566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 11099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 11109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(section, &n)); 11119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, <og)); /* We want the local+overlap size */ 111237d0c07bSMatthew G Knepley for (p = pStart, l = 0; p < pEnd; ++p) { 1113e6befd46SJed Brown PetscInt bdof, cdof, dof, off, c, cind; 111437d0c07bSMatthew G Knepley 111537d0c07bSMatthew G Knepley /* Should probably use constrained dofs */ 11169566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, p, &dof)); 11179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(section, p, &cdof)); 11189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(section, p, &cdofs)); 11199566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &off)); 11201a7dc684SMatthew G. Knepley /* If you have dofs, and constraints, and they are unequal, we set the blocksize to 1 */ 11211a7dc684SMatthew G. Knepley bdof = cdof && (dof - cdof) ? 1 : dof; 1122ad540459SPierre Jolivet if (dof) bs = bs < 0 ? bdof : PetscGCD(bs, bdof); 11235227eafbSStefano Zampini 1124e6befd46SJed Brown for (c = 0, cind = 0; c < dof; ++c, ++l) { 11255227eafbSStefano Zampini if (cind < cdof && c == cdofs[cind]) { 1126e6befd46SJed Brown ltog[l] = off < 0 ? off - c : -(off + c + 1); 1127e6befd46SJed Brown cind++; 1128e6befd46SJed Brown } else { 11295227eafbSStefano Zampini ltog[l] = (off < 0 ? -(off + 1) : off) + c - cind; 1130e6befd46SJed Brown } 113137d0c07bSMatthew G Knepley } 113237d0c07bSMatthew G Knepley } 1133bff27382SMatthew G. Knepley /* Must have same blocksize on all procs (some might have no points) */ 11349371c9d4SSatish Balay bsLocal[0] = bs < 0 ? PETSC_MAX_INT : bs; 11359371c9d4SSatish Balay bsLocal[1] = bs; 11369566063dSJacob Faibussowitsch PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)dm), bsLocal, bsMinMax)); 11379371c9d4SSatish Balay if (bsMinMax[0] != bsMinMax[1]) { 11389371c9d4SSatish Balay bs = 1; 11399371c9d4SSatish Balay } else { 11409371c9d4SSatish Balay bs = bsMinMax[0]; 11419371c9d4SSatish Balay } 11427591dbb2SMatthew G. Knepley bs = bs < 0 ? 1 : bs; 11437591dbb2SMatthew G. Knepley /* Must reduce indices by blocksize */ 1144ccf3bd66SMatthew G. Knepley if (bs > 1) { 1145ca469d19SJed Brown for (l = 0, k = 0; l < n; l += bs, ++k) { 1146ca469d19SJed Brown // Integer division of negative values truncates toward zero(!), not toward negative infinity 1147ca469d19SJed Brown ltog[k] = ltog[l] >= 0 ? ltog[l] / bs : -(-(ltog[l] + 1) / bs + 1); 1148ca469d19SJed Brown } 1149ccf3bd66SMatthew G. Knepley n /= bs; 1150ccf3bd66SMatthew G. Knepley } 11519566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm), bs, n, ltog, PETSC_OWN_POINTER, &dm->ltogmap)); 1152dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, getlocaltoglobalmapping); 115337d0c07bSMatthew G Knepley } 11541411c6eeSJed Brown *ltog = dm->ltogmap; 11553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11561411c6eeSJed Brown } 11571411c6eeSJed Brown 11581411c6eeSJed Brown /*@ 1159bb7acecfSBarry Smith DMGetBlockSize - Gets the inherent block size associated with a `DM` 11601411c6eeSJed Brown 11611411c6eeSJed Brown Not Collective 11621411c6eeSJed Brown 11631411c6eeSJed Brown Input Parameter: 1164bb7acecfSBarry Smith . dm - the `DM` with block structure 11651411c6eeSJed Brown 11661411c6eeSJed Brown Output Parameter: 11671411c6eeSJed Brown . bs - the block size, 1 implies no exploitable block structure 11681411c6eeSJed Brown 11691411c6eeSJed Brown Level: intermediate 11701411c6eeSJed Brown 117173ff1848SBarry Smith Notes: 1172bb7acecfSBarry Smith This might be the number of degrees of freedom at each grid point for a structured grid. 1173bb7acecfSBarry Smith 1174bb7acecfSBarry Smith Complex `DM` that represent multiphysics or staggered grids or mixed-methods do not generally have a single inherent block size, but 1175bb7acecfSBarry Smith rather different locations in the vectors may have a different block size. 1176bb7acecfSBarry Smith 11771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISCreateBlock()`, `VecSetBlockSize()`, `MatSetBlockSize()`, `DMGetLocalToGlobalMapping()` 11781411c6eeSJed Brown @*/ 1179d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBlockSize(DM dm, PetscInt *bs) 1180d71ae5a4SJacob Faibussowitsch { 11811411c6eeSJed Brown PetscFunctionBegin; 11821411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11834f572ea9SToby Isaac PetscAssertPointer(bs, 2); 11847a8be351SBarry Smith PetscCheck(dm->bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM does not have enough information to provide a block size yet"); 11851411c6eeSJed Brown *bs = dm->bs; 11863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11871411c6eeSJed Brown } 11881411c6eeSJed Brown 118948eeb7c8SBarry Smith /*@C 1190bb7acecfSBarry Smith DMCreateInterpolation - Gets the interpolation matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1191bb7acecfSBarry Smith `DMCreateGlobalVector()` on the coarse `DM` to similar vectors on the fine grid `DM`. 119247c6ae99SBarry Smith 119320f4b53cSBarry Smith Collective 119447c6ae99SBarry Smith 1195d8d19677SJose E. Roman Input Parameters: 1196bb7acecfSBarry Smith + dmc - the `DM` object 1197bb7acecfSBarry Smith - dmf - the second, finer `DM` object 119847c6ae99SBarry Smith 1199d8d19677SJose E. Roman Output Parameters: 120047c6ae99SBarry Smith + mat - the interpolation 1201*b6971eaeSBarry Smith - vec - the scaling (optional, pass `NULL` if not needed), see `DMCreateInterpolationScale()` 120247c6ae99SBarry Smith 120347c6ae99SBarry Smith Level: developer 120447c6ae99SBarry Smith 120595452b02SPatrick Sanan Notes: 1206bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1207bb7acecfSBarry Smith DMCoarsen(). The coordinates set into the `DMDA` are completely ignored in computing the interpolation. 1208d52bd9f3SBarry Smith 1209bb7acecfSBarry Smith For `DMDA` objects you can use this interpolation (more precisely the interpolation from the `DMGetCoordinateDM()`) to interpolate the mesh coordinate 1210bb7acecfSBarry Smith vectors EXCEPT in the periodic case where it does not make sense since the coordinate vectors are not periodic. 121185afcc9aSBarry Smith 12121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolationScale()` 121347c6ae99SBarry Smith @*/ 1214d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolation(DM dmc, DM dmf, Mat *mat, Vec *vec) 1215d71ae5a4SJacob Faibussowitsch { 121647c6ae99SBarry Smith PetscFunctionBegin; 1217a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1218a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 12194f572ea9SToby Isaac PetscAssertPointer(mat, 3); 12209566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInterpolation, dmc, dmf, 0, 0)); 1221dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createinterpolation, dmf, mat, vec); 12229566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInterpolation, dmc, dmf, 0, 0)); 12233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 122447c6ae99SBarry Smith } 122547c6ae99SBarry Smith 12263ad4599aSBarry Smith /*@ 1227a4e35b19SJacob Faibussowitsch DMCreateInterpolationScale - Forms L = 1/(R*1) where 1 is the vector of all ones, and R is 1228a4e35b19SJacob Faibussowitsch the transpose of the interpolation between the `DM`. 12292ed6491fSPatrick Sanan 12302ed6491fSPatrick Sanan Input Parameters: 1231bb7acecfSBarry Smith + dac - `DM` that defines a coarse mesh 1232bb7acecfSBarry Smith . daf - `DM` that defines a fine mesh 12332ed6491fSPatrick Sanan - mat - the restriction (or interpolation operator) from fine to coarse 12342ed6491fSPatrick Sanan 12352ed6491fSPatrick Sanan Output Parameter: 12362ed6491fSPatrick Sanan . scale - the scaled vector 12372ed6491fSPatrick Sanan 1238bb7acecfSBarry Smith Level: advanced 12392ed6491fSPatrick Sanan 124073ff1848SBarry Smith Note: 1241a4e35b19SJacob Faibussowitsch xcoarse = diag(L)*R*xfine preserves scale and is thus suitable for state (versus residual) 1242a4e35b19SJacob Faibussowitsch restriction. In other words xcoarse is the coarse representation of xfine. 1243a4e35b19SJacob Faibussowitsch 124473ff1848SBarry Smith Developer Note: 1245bb7acecfSBarry Smith If the fine-scale `DMDA` has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()` 1246e9c74fd6SRichard Tran Mills on the restriction/interpolation operator to set the bindingpropagates flag to true. 1247e9c74fd6SRichard Tran Mills 124860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatRestrict()`, `MatInterpolate()`, `DMCreateInterpolation()`, `DMCreateRestriction()`, `DMCreateGlobalVector()` 12492ed6491fSPatrick Sanan @*/ 1250d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolationScale(DM dac, DM daf, Mat mat, Vec *scale) 1251d71ae5a4SJacob Faibussowitsch { 12522ed6491fSPatrick Sanan Vec fine; 12532ed6491fSPatrick Sanan PetscScalar one = 1.0; 12549704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 1255e9c74fd6SRichard Tran Mills PetscBool bindingpropagates, isbound; 12569704db99SRichard Tran Mills #endif 12572ed6491fSPatrick Sanan 12582ed6491fSPatrick Sanan PetscFunctionBegin; 12599566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(daf, &fine)); 12609566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(dac, scale)); 12619566063dSJacob Faibussowitsch PetscCall(VecSet(fine, one)); 12629704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 12639704db99SRichard Tran Mills /* If the 'fine' Vec is bound to the CPU, it makes sense to bind 'mat' as well. 12649704db99SRichard Tran Mills * Note that we only do this for the CUDA case, right now, but if we add support for MatMultTranspose() via ViennaCL, 12659704db99SRichard Tran Mills * we'll need to do it for that case, too.*/ 12669566063dSJacob Faibussowitsch PetscCall(VecGetBindingPropagates(fine, &bindingpropagates)); 1267e9c74fd6SRichard Tran Mills if (bindingpropagates) { 12689566063dSJacob Faibussowitsch PetscCall(MatSetBindingPropagates(mat, PETSC_TRUE)); 12699566063dSJacob Faibussowitsch PetscCall(VecBoundToCPU(fine, &isbound)); 12709566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mat, isbound)); 127183aa49f4SRichard Tran Mills } 12729704db99SRichard Tran Mills #endif 12739566063dSJacob Faibussowitsch PetscCall(MatRestrict(mat, fine, *scale)); 12749566063dSJacob Faibussowitsch PetscCall(VecDestroy(&fine)); 12759566063dSJacob Faibussowitsch PetscCall(VecReciprocal(*scale)); 12763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12772ed6491fSPatrick Sanan } 12782ed6491fSPatrick Sanan 12792ed6491fSPatrick Sanan /*@ 1280bb7acecfSBarry Smith DMCreateRestriction - Gets restriction matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1281bb7acecfSBarry Smith `DMCreateGlobalVector()` on the fine `DM` to similar vectors on the coarse grid `DM`. 12823ad4599aSBarry Smith 128320f4b53cSBarry Smith Collective 12843ad4599aSBarry Smith 1285d8d19677SJose E. Roman Input Parameters: 1286bb7acecfSBarry Smith + dmc - the `DM` object 1287bb7acecfSBarry Smith - dmf - the second, finer `DM` object 12883ad4599aSBarry Smith 12893ad4599aSBarry Smith Output Parameter: 12903ad4599aSBarry Smith . mat - the restriction 12913ad4599aSBarry Smith 12923ad4599aSBarry Smith Level: developer 12933ad4599aSBarry Smith 1294bb7acecfSBarry Smith Note: 1295bb7acecfSBarry Smith This only works for `DMSTAG`. For many situations either the transpose of the operator obtained with `DMCreateInterpolation()` or that 1296bb7acecfSBarry Smith matrix multiplied by the vector obtained with `DMCreateInterpolationScale()` provides the desired object. 12973ad4599aSBarry Smith 12981cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRestrict()`, `DMInterpolate()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateInterpolation()` 12993ad4599aSBarry Smith @*/ 1300d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateRestriction(DM dmc, DM dmf, Mat *mat) 1301d71ae5a4SJacob Faibussowitsch { 13023ad4599aSBarry Smith PetscFunctionBegin; 1303a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1304a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 13054f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13069566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateRestriction, dmc, dmf, 0, 0)); 1307dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createrestriction, dmf, mat); 13089566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateRestriction, dmc, dmf, 0, 0)); 13093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13103ad4599aSBarry Smith } 13113ad4599aSBarry Smith 131247c6ae99SBarry Smith /*@ 1313a4e35b19SJacob Faibussowitsch DMCreateInjection - Gets injection matrix between two `DM` objects. 131447c6ae99SBarry Smith 131520f4b53cSBarry Smith Collective 131647c6ae99SBarry Smith 1317d8d19677SJose E. Roman Input Parameters: 1318bb7acecfSBarry Smith + dac - the `DM` object 1319bb7acecfSBarry Smith - daf - the second, finer `DM` object 132047c6ae99SBarry Smith 132147c6ae99SBarry Smith Output Parameter: 13226dbf9973SLawrence Mitchell . mat - the injection 132347c6ae99SBarry Smith 132447c6ae99SBarry Smith Level: developer 132547c6ae99SBarry Smith 1326a4e35b19SJacob Faibussowitsch Notes: 1327a4e35b19SJacob Faibussowitsch This is an operator that applied to a vector obtained with `DMCreateGlobalVector()` on the 1328a4e35b19SJacob Faibussowitsch fine grid maps the values to a vector on the vector on the coarse `DM` by simply selecting 1329a4e35b19SJacob Faibussowitsch the values on the coarse grid points. This compares to the operator obtained by 1330a4e35b19SJacob Faibussowitsch `DMCreateRestriction()` or the transpose of the operator obtained by 1331a4e35b19SJacob Faibussowitsch `DMCreateInterpolation()` that uses a "local weighted average" of the values around the 1332a4e35b19SJacob Faibussowitsch coarse grid point as the coarse grid value. 1333a4e35b19SJacob Faibussowitsch 1334bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1335bb7acecfSBarry Smith `DMCoarsen()`. The coordinates set into the `DMDA` are completely ignored in computing the injection. 133685afcc9aSBarry Smith 13371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateInterpolation()`, 1338bb7acecfSBarry Smith `DMCreateRestriction()`, `MatRestrict()`, `MatInterpolate()` 133947c6ae99SBarry Smith @*/ 1340d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInjection(DM dac, DM daf, Mat *mat) 1341d71ae5a4SJacob Faibussowitsch { 134247c6ae99SBarry Smith PetscFunctionBegin; 1343a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dac, DM_CLASSID, 1); 1344a5bc1bf3SBarry Smith PetscValidHeaderSpecific(daf, DM_CLASSID, 2); 13454f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13469566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInjection, dac, daf, 0, 0)); 1347dbbe0bcdSBarry Smith PetscUseTypeMethod(dac, createinjection, daf, mat); 13489566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInjection, dac, daf, 0, 0)); 13493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 135047c6ae99SBarry Smith } 135147c6ae99SBarry Smith 1352b412c318SBarry Smith /*@ 1353bb7acecfSBarry Smith DMCreateMassMatrix - Gets the mass matrix between two `DM` objects, M_ij = \int \phi_i \psi_j where the \phi are Galerkin basis functions for a 1354bb7acecfSBarry Smith a Galerkin finite element model on the `DM` 1355bd041c0cSMatthew G. Knepley 135620f4b53cSBarry Smith Collective 1357bd041c0cSMatthew G. Knepley 1358d8d19677SJose E. Roman Input Parameters: 1359bb7acecfSBarry Smith + dmc - the target `DM` object 1360bb7acecfSBarry Smith - dmf - the source `DM` object 1361bd041c0cSMatthew G. Knepley 1362bd041c0cSMatthew G. Knepley Output Parameter: 1363b4937a87SMatthew G. Knepley . mat - the mass matrix 1364bd041c0cSMatthew G. Knepley 1365bd041c0cSMatthew G. Knepley Level: developer 1366bd041c0cSMatthew G. Knepley 1367bb7acecfSBarry Smith Notes: 1368bb7acecfSBarry Smith For `DMPLEX` the finite element model for the `DM` must have been already provided. 1369bb7acecfSBarry Smith 137020f4b53cSBarry Smith if `dmc` is `dmf` then x^t M x is an approximation to the L2 norm of the vector x which is obtained by `DMCreateGlobalVector()` 1371bb7acecfSBarry Smith 137242747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrixLumped()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1373bd041c0cSMatthew G. Knepley @*/ 1374d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrix(DM dmc, DM dmf, Mat *mat) 1375d71ae5a4SJacob Faibussowitsch { 1376bd041c0cSMatthew G. Knepley PetscFunctionBegin; 1377b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1378b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 13794f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13805b8ffe73SMark Adams PetscCall(PetscLogEventBegin(DM_CreateMassMatrix, 0, 0, 0, 0)); 1381dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createmassmatrix, dmf, mat); 13825b8ffe73SMark Adams PetscCall(PetscLogEventEnd(DM_CreateMassMatrix, 0, 0, 0, 0)); 13833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1384b4937a87SMatthew G. Knepley } 1385b4937a87SMatthew G. Knepley 1386b4937a87SMatthew G. Knepley /*@ 1387bb7acecfSBarry Smith DMCreateMassMatrixLumped - Gets the lumped mass matrix for a given `DM` 1388b4937a87SMatthew G. Knepley 138920f4b53cSBarry Smith Collective 1390b4937a87SMatthew G. Knepley 1391b4937a87SMatthew G. Knepley Input Parameter: 1392bb7acecfSBarry Smith . dm - the `DM` object 1393b4937a87SMatthew G. Knepley 1394b4937a87SMatthew G. Knepley Output Parameter: 1395bb7acecfSBarry Smith . lm - the lumped mass matrix, which is a diagonal matrix, represented as a vector 1396b4937a87SMatthew G. Knepley 1397b4937a87SMatthew G. Knepley Level: developer 1398b4937a87SMatthew G. Knepley 1399bb7acecfSBarry Smith Note: 1400bb7acecfSBarry Smith See `DMCreateMassMatrix()` for how to create the non-lumped version of the mass matrix. 1401bb7acecfSBarry Smith 140260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrix()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1403b4937a87SMatthew G. Knepley @*/ 1404d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrixLumped(DM dm, Vec *lm) 1405d71ae5a4SJacob Faibussowitsch { 1406b4937a87SMatthew G. Knepley PetscFunctionBegin; 1407b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14084f572ea9SToby Isaac PetscAssertPointer(lm, 2); 1409dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createmassmatrixlumped, lm); 14103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1411bd041c0cSMatthew G. Knepley } 1412bd041c0cSMatthew G. Knepley 1413bd041c0cSMatthew G. Knepley /*@ 1414bb7acecfSBarry Smith DMCreateColoring - Gets coloring of a graph associated with the `DM`. Often the graph represents the operator matrix associated with the discretization 1415bb7acecfSBarry Smith of a PDE on the `DM`. 141647c6ae99SBarry Smith 141720f4b53cSBarry Smith Collective 141847c6ae99SBarry Smith 1419d8d19677SJose E. Roman Input Parameters: 1420bb7acecfSBarry Smith + dm - the `DM` object 1421bb7acecfSBarry Smith - ctype - `IS_COLORING_LOCAL` or `IS_COLORING_GLOBAL` 142247c6ae99SBarry Smith 142347c6ae99SBarry Smith Output Parameter: 142447c6ae99SBarry Smith . coloring - the coloring 142547c6ae99SBarry Smith 14261bf8429eSBarry Smith Level: developer 14271bf8429eSBarry Smith 1428ec5066bdSBarry Smith Notes: 1429bb7acecfSBarry Smith Coloring of matrices can also be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 1430bb7acecfSBarry Smith matrix comes from (what this function provides). In general using the mesh produces a more optimal coloring (fewer colors). 1431ec5066bdSBarry Smith 1432bb7acecfSBarry Smith This produces a coloring with the distance of 2, see `MatSetColoringDistance()` which can be used for efficiently computing Jacobians with `MatFDColoringCreate()` 14331bf8429eSBarry Smith For `DMDA` in three dimensions with periodic boundary conditions the number of grid points in each dimension must be divisible by 2*stencil_width + 1, 14341bf8429eSBarry Smith otherwise an error will be generated. 1435ec5066bdSBarry Smith 14361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISColoring`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatType()`, `MatColoring`, `MatFDColoringCreate()` 1437aab9d709SJed Brown @*/ 1438d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateColoring(DM dm, ISColoringType ctype, ISColoring *coloring) 1439d71ae5a4SJacob Faibussowitsch { 144047c6ae99SBarry Smith PetscFunctionBegin; 1441171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14424f572ea9SToby Isaac PetscAssertPointer(coloring, 3); 1443dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getcoloring, ctype, coloring); 14443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 144547c6ae99SBarry Smith } 144647c6ae99SBarry Smith 1447b412c318SBarry Smith /*@ 1448bb7acecfSBarry Smith DMCreateMatrix - Gets an empty matrix for a `DM` that is most commonly used to store the Jacobian of a discrete PDE operator. 144947c6ae99SBarry Smith 145020f4b53cSBarry Smith Collective 145147c6ae99SBarry Smith 145247c6ae99SBarry Smith Input Parameter: 1453bb7acecfSBarry Smith . dm - the `DM` object 145447c6ae99SBarry Smith 145547c6ae99SBarry Smith Output Parameter: 145647c6ae99SBarry Smith . mat - the empty Jacobian 145747c6ae99SBarry Smith 145820f4b53cSBarry Smith Options Database Key: 1459bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 1460f27dd7c6SMatthew G. Knepley 146120f4b53cSBarry Smith Level: beginner 146220f4b53cSBarry Smith 146395452b02SPatrick Sanan Notes: 146495452b02SPatrick Sanan This properly preallocates the number of nonzeros in the sparse matrix so you 146594013140SBarry Smith do not need to do it yourself. 146694013140SBarry Smith 146794013140SBarry Smith By default it also sets the nonzero structure and puts in the zero entries. To prevent setting 1468bb7acecfSBarry Smith the nonzero pattern call `DMSetMatrixPreallocateOnly()` 146994013140SBarry Smith 1470bb7acecfSBarry Smith For `DMDA`, when you call `MatView()` on this matrix it is displayed using the global natural ordering, NOT in the ordering used 147194013140SBarry Smith internally by PETSc. 147294013140SBarry Smith 1473bb7acecfSBarry Smith For `DMDA`, in general it is easiest to use `MatSetValuesStencil()` or `MatSetValuesLocal()` to put values into the matrix because 1474bb7acecfSBarry Smith `MatSetValues()` requires the indices for the global numbering for the `DMDA` which is complic`ated to compute 147594013140SBarry Smith 14761cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMSetMatType()`, `DMCreateMassMatrix()` 1477aab9d709SJed Brown @*/ 1478d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMatrix(DM dm, Mat *mat) 1479d71ae5a4SJacob Faibussowitsch { 148047c6ae99SBarry Smith PetscFunctionBegin; 1481171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14824f572ea9SToby Isaac PetscAssertPointer(mat, 2); 14839566063dSJacob Faibussowitsch PetscCall(MatInitializePackage()); 14849566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateMatrix, 0, 0, 0, 0)); 1485dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, creatematrix, mat); 148676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1487c6b011d8SStefano Zampini DM mdm; 1488c6b011d8SStefano Zampini 14899566063dSJacob Faibussowitsch PetscCall(MatGetDM(*mat, &mdm)); 14907a8be351SBarry Smith PetscCheck(mdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the matrix", ((PetscObject)dm)->type_name); 1491c6b011d8SStefano Zampini } 1492e571a35bSMatthew G. Knepley /* Handle nullspace and near nullspace */ 1493e5e52638SMatthew G. Knepley if (dm->Nf) { 1494e571a35bSMatthew G. Knepley MatNullSpace nullSpace; 1495649ef022SMatthew Knepley PetscInt Nf, f; 1496e571a35bSMatthew G. Knepley 14979566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 1498649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1499649ef022SMatthew Knepley if (dm->nullspaceConstructors[f]) { 15009566063dSJacob Faibussowitsch PetscCall((*dm->nullspaceConstructors[f])(dm, f, f, &nullSpace)); 15019566063dSJacob Faibussowitsch PetscCall(MatSetNullSpace(*mat, nullSpace)); 15029566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1503649ef022SMatthew Knepley break; 1504e571a35bSMatthew G. Knepley } 1505649ef022SMatthew Knepley } 1506649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1507649ef022SMatthew Knepley if (dm->nearnullspaceConstructors[f]) { 15089566063dSJacob Faibussowitsch PetscCall((*dm->nearnullspaceConstructors[f])(dm, f, f, &nullSpace)); 15099566063dSJacob Faibussowitsch PetscCall(MatSetNearNullSpace(*mat, nullSpace)); 15109566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1511e571a35bSMatthew G. Knepley } 1512e571a35bSMatthew G. Knepley } 1513e571a35bSMatthew G. Knepley } 15149566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateMatrix, 0, 0, 0, 0)); 15153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 151647c6ae99SBarry Smith } 151747c6ae99SBarry Smith 1518732e2eb9SMatthew G Knepley /*@ 1519a4e35b19SJacob Faibussowitsch DMSetMatrixPreallocateSkip - When `DMCreateMatrix()` is called the matrix sizes and 1520a4e35b19SJacob Faibussowitsch `ISLocalToGlobalMapping` will be properly set, but the data structures to store values in the 1521a4e35b19SJacob Faibussowitsch matrices will not be preallocated. 1522aa0f6e3cSJed Brown 152320f4b53cSBarry Smith Logically Collective 1524aa0f6e3cSJed Brown 1525aa0f6e3cSJed Brown Input Parameters: 1526bb7acecfSBarry Smith + dm - the `DM` 1527bb7acecfSBarry Smith - skip - `PETSC_TRUE` to skip preallocation 1528aa0f6e3cSJed Brown 1529aa0f6e3cSJed Brown Level: developer 1530aa0f6e3cSJed Brown 153173ff1848SBarry Smith Note: 1532a4e35b19SJacob Faibussowitsch This is most useful to reduce initialization costs when `MatSetPreallocationCOO()` and 1533a4e35b19SJacob Faibussowitsch `MatSetValuesCOO()` will be used. 1534a4e35b19SJacob Faibussowitsch 15351cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateOnly()` 1536aa0f6e3cSJed Brown @*/ 1537d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateSkip(DM dm, PetscBool skip) 1538d71ae5a4SJacob Faibussowitsch { 1539aa0f6e3cSJed Brown PetscFunctionBegin; 1540aa0f6e3cSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1541aa0f6e3cSJed Brown dm->prealloc_skip = skip; 15423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1543aa0f6e3cSJed Brown } 1544aa0f6e3cSJed Brown 1545aa0f6e3cSJed Brown /*@ 1546bb7acecfSBarry Smith DMSetMatrixPreallocateOnly - When `DMCreateMatrix()` is called the matrix will be properly 1547732e2eb9SMatthew G Knepley preallocated but the nonzero structure and zero values will not be set. 1548732e2eb9SMatthew G Knepley 154920f4b53cSBarry Smith Logically Collective 1550732e2eb9SMatthew G Knepley 1551d8d19677SJose E. Roman Input Parameters: 1552bb7acecfSBarry Smith + dm - the `DM` 1553bb7acecfSBarry Smith - only - `PETSC_TRUE` if only want preallocation 1554732e2eb9SMatthew G Knepley 155520f4b53cSBarry Smith Options Database Key: 1556bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()`, `DMCreateMassMatrix()`, but do not fill it with zeros 1557f27dd7c6SMatthew G. Knepley 155820f4b53cSBarry Smith Level: developer 155920f4b53cSBarry Smith 15601cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateSkip()` 1561732e2eb9SMatthew G Knepley @*/ 1562d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateOnly(DM dm, PetscBool only) 1563d71ae5a4SJacob Faibussowitsch { 1564732e2eb9SMatthew G Knepley PetscFunctionBegin; 1565732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1566732e2eb9SMatthew G Knepley dm->prealloc_only = only; 15673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1568732e2eb9SMatthew G Knepley } 1569732e2eb9SMatthew G Knepley 1570b06ff27eSHong Zhang /*@ 1571bb7acecfSBarry Smith DMSetMatrixStructureOnly - When `DMCreateMatrix()` is called, the matrix structure will be created 1572bb7acecfSBarry Smith but the array for numerical values will not be allocated. 1573b06ff27eSHong Zhang 157420f4b53cSBarry Smith Logically Collective 1575b06ff27eSHong Zhang 1576d8d19677SJose E. Roman Input Parameters: 1577bb7acecfSBarry Smith + dm - the `DM` 1578da81f932SPierre Jolivet - only - `PETSC_TRUE` if you only want matrix structure 1579b06ff27eSHong Zhang 1580b06ff27eSHong Zhang Level: developer 1581bb7acecfSBarry Smith 15821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMSetMatrixPreallocateSkip()` 1583b06ff27eSHong Zhang @*/ 1584d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixStructureOnly(DM dm, PetscBool only) 1585d71ae5a4SJacob Faibussowitsch { 1586b06ff27eSHong Zhang PetscFunctionBegin; 1587b06ff27eSHong Zhang PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1588b06ff27eSHong Zhang dm->structure_only = only; 15893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1590b06ff27eSHong Zhang } 1591b06ff27eSHong Zhang 1592863027abSJed Brown /*@ 1593863027abSJed Brown DMSetBlockingType - set the blocking granularity to be used for variable block size `DMCreateMatrix()` is called 1594863027abSJed Brown 159520f4b53cSBarry Smith Logically Collective 1596863027abSJed Brown 1597863027abSJed Brown Input Parameters: 1598863027abSJed Brown + dm - the `DM` 1599863027abSJed Brown - btype - block by topological point or field node 1600863027abSJed Brown 160120f4b53cSBarry Smith Options Database Key: 16020e762ea3SJed Brown . -dm_blocking_type [topological_point, field_node] - use topological point blocking or field node blocking 1603863027abSJed Brown 160420f4b53cSBarry Smith Level: advanced 160520f4b53cSBarry Smith 16061cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()` 1607863027abSJed Brown @*/ 1608863027abSJed Brown PetscErrorCode DMSetBlockingType(DM dm, DMBlockingType btype) 1609863027abSJed Brown { 1610863027abSJed Brown PetscFunctionBegin; 1611863027abSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1612863027abSJed Brown dm->blocking_type = btype; 16133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1614863027abSJed Brown } 1615863027abSJed Brown 1616863027abSJed Brown /*@ 1617863027abSJed Brown DMGetBlockingType - get the blocking granularity to be used for variable block size `DMCreateMatrix()` is called 1618863027abSJed Brown 1619863027abSJed Brown Not Collective 1620863027abSJed Brown 16212fe279fdSBarry Smith Input Parameter: 1622863027abSJed Brown . dm - the `DM` 1623863027abSJed Brown 16242fe279fdSBarry Smith Output Parameter: 1625863027abSJed Brown . btype - block by topological point or field node 1626863027abSJed Brown 1627863027abSJed Brown Level: advanced 1628863027abSJed Brown 16291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()` 1630863027abSJed Brown @*/ 1631863027abSJed Brown PetscErrorCode DMGetBlockingType(DM dm, DMBlockingType *btype) 1632863027abSJed Brown { 1633863027abSJed Brown PetscFunctionBegin; 1634863027abSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16354f572ea9SToby Isaac PetscAssertPointer(btype, 2); 1636863027abSJed Brown *btype = dm->blocking_type; 16373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1638863027abSJed Brown } 1639863027abSJed Brown 1640a89ea682SMatthew G Knepley /*@C 1641bb7acecfSBarry Smith DMGetWorkArray - Gets a work array guaranteed to be at least the input size, restore with `DMRestoreWorkArray()` 1642a89ea682SMatthew G Knepley 1643a89ea682SMatthew G Knepley Not Collective 1644a89ea682SMatthew G Knepley 1645a89ea682SMatthew G Knepley Input Parameters: 1646bb7acecfSBarry Smith + dm - the `DM` object 1647a5b23f4aSJose E. Roman . count - The minimum size 164820f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, or `MPIU_INT`) 1649a89ea682SMatthew G Knepley 1650a89ea682SMatthew G Knepley Output Parameter: 165160225df5SJacob Faibussowitsch . mem - the work array 1652a89ea682SMatthew G Knepley 1653a89ea682SMatthew G Knepley Level: developer 1654a89ea682SMatthew G Knepley 165573ff1848SBarry Smith Notes: 1656da81f932SPierre Jolivet A `DM` may stash the array between instantiations so using this routine may be more efficient than calling `PetscMalloc()` 1657bb7acecfSBarry Smith 1658bb7acecfSBarry Smith The array may contain nonzero values 1659bb7acecfSBarry Smith 16601cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMRestoreWorkArray()`, `PetscMalloc()` 1661a89ea682SMatthew G Knepley @*/ 1662d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1663d71ae5a4SJacob Faibussowitsch { 1664aa1993deSMatthew G Knepley DMWorkLink link; 166569291d52SBarry Smith PetscMPIInt dsize; 1666a89ea682SMatthew G Knepley 1667a89ea682SMatthew G Knepley PetscFunctionBegin; 1668a89ea682SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16694f572ea9SToby Isaac PetscAssertPointer(mem, 4); 1670442f3b32SStefano Zampini if (!count) { 1671442f3b32SStefano Zampini *(void **)mem = NULL; 1672442f3b32SStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 1673442f3b32SStefano Zampini } 1674aa1993deSMatthew G Knepley if (dm->workin) { 1675aa1993deSMatthew G Knepley link = dm->workin; 1676aa1993deSMatthew G Knepley dm->workin = dm->workin->next; 1677aa1993deSMatthew G Knepley } else { 16784dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&link)); 1679a89ea682SMatthew G Knepley } 1680b77fa653SStefano Zampini /* Avoid MPI_Type_size for most used datatypes 1681b77fa653SStefano Zampini Get size directly */ 1682b77fa653SStefano Zampini if (dtype == MPIU_INT) dsize = sizeof(PetscInt); 1683b77fa653SStefano Zampini else if (dtype == MPIU_REAL) dsize = sizeof(PetscReal); 1684b77fa653SStefano Zampini #if defined(PETSC_USE_64BIT_INDICES) 1685b77fa653SStefano Zampini else if (dtype == MPI_INT) dsize = sizeof(int); 1686b77fa653SStefano Zampini #endif 1687b77fa653SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1688b77fa653SStefano Zampini else if (dtype == MPIU_SCALAR) dsize = sizeof(PetscScalar); 1689b77fa653SStefano Zampini #endif 1690b77fa653SStefano Zampini else PetscCallMPI(MPI_Type_size(dtype, &dsize)); 1691b77fa653SStefano Zampini 16925056fcd2SBarry Smith if (((size_t)dsize * count) > link->bytes) { 16939566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 16949566063dSJacob Faibussowitsch PetscCall(PetscMalloc(dsize * count, &link->mem)); 1695854ce69bSBarry Smith link->bytes = dsize * count; 1696aa1993deSMatthew G Knepley } 1697aa1993deSMatthew G Knepley link->next = dm->workout; 1698aa1993deSMatthew G Knepley dm->workout = link; 1699cea3dcb8SSatish Balay #if defined(__MEMCHECK_H) && (defined(PLAT_amd64_linux) || defined(PLAT_x86_linux) || defined(PLAT_amd64_darwin)) 170000d952a4SJed Brown VALGRIND_MAKE_MEM_NOACCESS((char *)link->mem + (size_t)dsize * count, link->bytes - (size_t)dsize * count); 170100d952a4SJed Brown VALGRIND_MAKE_MEM_UNDEFINED(link->mem, (size_t)dsize * count); 170200d952a4SJed Brown #endif 1703aa1993deSMatthew G Knepley *(void **)mem = link->mem; 17043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1705a89ea682SMatthew G Knepley } 1706a89ea682SMatthew G Knepley 1707aa1993deSMatthew G Knepley /*@C 1708bb7acecfSBarry Smith DMRestoreWorkArray - Restores a work array obtained with `DMCreateWorkArray()` 1709aa1993deSMatthew G Knepley 1710aa1993deSMatthew G Knepley Not Collective 1711aa1993deSMatthew G Knepley 1712aa1993deSMatthew G Knepley Input Parameters: 1713bb7acecfSBarry Smith + dm - the `DM` object 1714a5b23f4aSJose E. Roman . count - The minimum size 171520f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, `MPIU_INT` 1716aa1993deSMatthew G Knepley 1717aa1993deSMatthew G Knepley Output Parameter: 171860225df5SJacob Faibussowitsch . mem - the work array 1719aa1993deSMatthew G Knepley 1720aa1993deSMatthew G Knepley Level: developer 1721aa1993deSMatthew G Knepley 172273ff1848SBarry Smith Developer Note: 1723bb7acecfSBarry Smith count and dtype are ignored, they are only needed for `DMGetWorkArray()` 1724147403d9SBarry Smith 17251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMGetWorkArray()` 1726aa1993deSMatthew G Knepley @*/ 1727d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestoreWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1728d71ae5a4SJacob Faibussowitsch { 1729aa1993deSMatthew G Knepley DMWorkLink *p, link; 1730aa1993deSMatthew G Knepley 1731aa1993deSMatthew G Knepley PetscFunctionBegin; 1732aa1993deSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17334f572ea9SToby Isaac PetscAssertPointer(mem, 4); 1734a4e35b19SJacob Faibussowitsch (void)count; 1735a4e35b19SJacob Faibussowitsch (void)dtype; 1736442f3b32SStefano Zampini if (!*(void **)mem) PetscFunctionReturn(PETSC_SUCCESS); 1737aa1993deSMatthew G Knepley for (p = &dm->workout; (link = *p); p = &link->next) { 1738aa1993deSMatthew G Knepley if (link->mem == *(void **)mem) { 1739aa1993deSMatthew G Knepley *p = link->next; 1740aa1993deSMatthew G Knepley link->next = dm->workin; 1741aa1993deSMatthew G Knepley dm->workin = link; 17420298fd71SBarry Smith *(void **)mem = NULL; 17433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1744aa1993deSMatthew G Knepley } 1745aa1993deSMatthew G Knepley } 1746aa1993deSMatthew G Knepley SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Array was not checked out"); 1747aa1993deSMatthew G Knepley } 1748e7c4fc90SDmitry Karpeev 17498cda7954SMatthew G. Knepley /*@C 1750bb7acecfSBarry Smith DMSetNullSpaceConstructor - Provide a callback function which constructs the nullspace for a given field, defined with `DMAddField()`, when function spaces 1751bb7acecfSBarry Smith are joined or split, such as in `DMCreateSubDM()` 17528cda7954SMatthew G. Knepley 175320f4b53cSBarry Smith Logically Collective; No Fortran Support 17548cda7954SMatthew G. Knepley 17558cda7954SMatthew G. Knepley Input Parameters: 1756bb7acecfSBarry Smith + dm - The `DM` 17578cda7954SMatthew G. Knepley . field - The field number for the nullspace 17588cda7954SMatthew G. Knepley - nullsp - A callback to create the nullspace 17598cda7954SMatthew G. Knepley 176020f4b53cSBarry Smith Calling sequence of `nullsp`: 1761bb7acecfSBarry Smith + dm - The present `DM` 1762bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1763147403d9SBarry Smith . field - The field number in dm 1764147403d9SBarry Smith - nullSpace - The nullspace for the given field 17658cda7954SMatthew G. Knepley 176649762cbcSSatish Balay Level: intermediate 176749762cbcSSatish Balay 17681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1769147403d9SBarry Smith @*/ 1770a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1771d71ae5a4SJacob Faibussowitsch { 1772435a35e8SMatthew G Knepley PetscFunctionBegin; 1773435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17747a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1775435a35e8SMatthew G Knepley dm->nullspaceConstructors[field] = nullsp; 17763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1777435a35e8SMatthew G Knepley } 1778435a35e8SMatthew G Knepley 17798cda7954SMatthew G. Knepley /*@C 1780bb7acecfSBarry Smith DMGetNullSpaceConstructor - Return the callback function which constructs the nullspace for a given field, defined with `DMAddField()` 17818cda7954SMatthew G. Knepley 178220f4b53cSBarry Smith Not Collective; No Fortran Support 17838cda7954SMatthew G. Knepley 17848cda7954SMatthew G. Knepley Input Parameters: 1785bb7acecfSBarry Smith + dm - The `DM` 17868cda7954SMatthew G. Knepley - field - The field number for the nullspace 17878cda7954SMatthew G. Knepley 17888cda7954SMatthew G. Knepley Output Parameter: 17898cda7954SMatthew G. Knepley . nullsp - A callback to create the nullspace 17908cda7954SMatthew G. Knepley 179120f4b53cSBarry Smith Calling sequence of `nullsp`: 1792147403d9SBarry Smith + dm - The present DM 1793147403d9SBarry Smith . origField - The field number given above, in the original DM 1794147403d9SBarry Smith . field - The field number in dm 1795147403d9SBarry Smith - nullSpace - The nullspace for the given field 17968cda7954SMatthew G. Knepley 179749762cbcSSatish Balay Level: intermediate 179849762cbcSSatish Balay 17991cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1800147403d9SBarry Smith @*/ 1801a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1802d71ae5a4SJacob Faibussowitsch { 18030a50eb56SMatthew G. Knepley PetscFunctionBegin; 18040a50eb56SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18054f572ea9SToby Isaac PetscAssertPointer(nullsp, 3); 18067a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 18070a50eb56SMatthew G. Knepley *nullsp = dm->nullspaceConstructors[field]; 18083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18090a50eb56SMatthew G. Knepley } 18100a50eb56SMatthew G. Knepley 18118cda7954SMatthew G. Knepley /*@C 1812bb7acecfSBarry Smith DMSetNearNullSpaceConstructor - Provide a callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 18138cda7954SMatthew G. Knepley 181420f4b53cSBarry Smith Logically Collective; No Fortran Support 18158cda7954SMatthew G. Knepley 18168cda7954SMatthew G. Knepley Input Parameters: 1817bb7acecfSBarry Smith + dm - The `DM` 18188cda7954SMatthew G. Knepley . field - The field number for the nullspace 18198cda7954SMatthew G. Knepley - nullsp - A callback to create the near-nullspace 18208cda7954SMatthew G. Knepley 182120f4b53cSBarry Smith Calling sequence of `nullsp`: 1822bb7acecfSBarry Smith + dm - The present `DM` 1823bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1824147403d9SBarry Smith . field - The field number in dm 1825147403d9SBarry Smith - nullSpace - The nullspace for the given field 18268cda7954SMatthew G. Knepley 182749762cbcSSatish Balay Level: intermediate 182849762cbcSSatish Balay 18291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`, 1830bb7acecfSBarry Smith `MatNullSpace` 1831147403d9SBarry Smith @*/ 1832a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1833d71ae5a4SJacob Faibussowitsch { 1834f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1835f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18367a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1837f9d4088aSMatthew G. Knepley dm->nearnullspaceConstructors[field] = nullsp; 18383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1839f9d4088aSMatthew G. Knepley } 1840f9d4088aSMatthew G. Knepley 18418cda7954SMatthew G. Knepley /*@C 1842bb7acecfSBarry Smith DMGetNearNullSpaceConstructor - Return the callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 18438cda7954SMatthew G. Knepley 184420f4b53cSBarry Smith Not Collective; No Fortran Support 18458cda7954SMatthew G. Knepley 18468cda7954SMatthew G. Knepley Input Parameters: 1847bb7acecfSBarry Smith + dm - The `DM` 18488cda7954SMatthew G. Knepley - field - The field number for the nullspace 18498cda7954SMatthew G. Knepley 18508cda7954SMatthew G. Knepley Output Parameter: 18518cda7954SMatthew G. Knepley . nullsp - A callback to create the near-nullspace 18528cda7954SMatthew G. Knepley 185320f4b53cSBarry Smith Calling sequence of `nullsp`: 1854bb7acecfSBarry Smith + dm - The present `DM` 1855bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1856147403d9SBarry Smith . field - The field number in dm 1857147403d9SBarry Smith - nullSpace - The nullspace for the given field 18588cda7954SMatthew G. Knepley 185949762cbcSSatish Balay Level: intermediate 186049762cbcSSatish Balay 18611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, 1862bb7acecfSBarry Smith `MatNullSpace`, `DMCreateSuperDM()` 1863147403d9SBarry Smith @*/ 1864a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1865d71ae5a4SJacob Faibussowitsch { 1866f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1867f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18684f572ea9SToby Isaac PetscAssertPointer(nullsp, 3); 18697a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1870f9d4088aSMatthew G. Knepley *nullsp = dm->nearnullspaceConstructors[field]; 18713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1872f9d4088aSMatthew G. Knepley } 1873f9d4088aSMatthew G. Knepley 18744f3b5142SJed Brown /*@C 1875bb7acecfSBarry Smith DMCreateFieldIS - Creates a set of `IS` objects with the global indices of dofs for each field defined with `DMAddField()` 18764d343eeaSMatthew G Knepley 187720f4b53cSBarry Smith Not Collective; No Fortran Support 18784d343eeaSMatthew G Knepley 18794d343eeaSMatthew G Knepley Input Parameter: 1880bb7acecfSBarry Smith . dm - the `DM` object 18814d343eeaSMatthew G Knepley 18824d343eeaSMatthew G Knepley Output Parameters: 188320f4b53cSBarry Smith + numFields - The number of fields (or `NULL` if not requested) 188420f4b53cSBarry Smith . fieldNames - The number of each field (or `NULL` if not requested) 188520f4b53cSBarry Smith - fields - The global indices for each field (or `NULL` if not requested) 18864d343eeaSMatthew G Knepley 18874d343eeaSMatthew G Knepley Level: intermediate 18884d343eeaSMatthew G Knepley 1889bb7acecfSBarry Smith Note: 189073ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `fieldNames` should be freed with 189173ff1848SBarry Smith `PetscFree()`, every entry of `fields` should be destroyed with `ISDestroy()`, and both arrays should be freed with 1892bb7acecfSBarry Smith `PetscFree()`. 189321c9b008SJed Brown 189473ff1848SBarry Smith Developer Note: 1895bb7acecfSBarry Smith It is not clear why both this function and `DMCreateFieldDecomposition()` exist. Having two seems redundant and confusing. This function should 1896bb7acecfSBarry Smith likely be removed. 1897bb7acecfSBarry Smith 18981cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1899bb7acecfSBarry Smith `DMCreateFieldDecomposition()` 19004d343eeaSMatthew G Knepley @*/ 1901d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldIS(DM dm, PetscInt *numFields, char ***fieldNames, IS **fields) 1902d71ae5a4SJacob Faibussowitsch { 190337d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 19044d343eeaSMatthew G Knepley 19054d343eeaSMatthew G Knepley PetscFunctionBegin; 19064d343eeaSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 190769ca1f37SDmitry Karpeev if (numFields) { 19084f572ea9SToby Isaac PetscAssertPointer(numFields, 2); 190969ca1f37SDmitry Karpeev *numFields = 0; 191069ca1f37SDmitry Karpeev } 191137d0c07bSMatthew G Knepley if (fieldNames) { 19124f572ea9SToby Isaac PetscAssertPointer(fieldNames, 3); 19130298fd71SBarry Smith *fieldNames = NULL; 191469ca1f37SDmitry Karpeev } 191569ca1f37SDmitry Karpeev if (fields) { 19164f572ea9SToby Isaac PetscAssertPointer(fields, 4); 19170298fd71SBarry Smith *fields = NULL; 191869ca1f37SDmitry Karpeev } 19199566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 192037d0c07bSMatthew G Knepley if (section) { 19213a544194SStefano Zampini PetscInt *fieldSizes, *fieldNc, **fieldIndices; 192237d0c07bSMatthew G Knepley PetscInt nF, f, pStart, pEnd, p; 192337d0c07bSMatthew G Knepley 19249566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 19259566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &nF)); 19269566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nF, &fieldSizes, nF, &fieldNc, nF, &fieldIndices)); 19279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd)); 192837d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 192937d0c07bSMatthew G Knepley fieldSizes[f] = 0; 19309566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &fieldNc[f])); 193137d0c07bSMatthew G Knepley } 193237d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 193337d0c07bSMatthew G Knepley PetscInt gdof; 193437d0c07bSMatthew G Knepley 19359566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 193637d0c07bSMatthew G Knepley if (gdof > 0) { 193737d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19383a544194SStefano Zampini PetscInt fdof, fcdof, fpdof; 193937d0c07bSMatthew G Knepley 19409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19419566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 19423a544194SStefano Zampini fpdof = fdof - fcdof; 19433a544194SStefano Zampini if (fpdof && fpdof != fieldNc[f]) { 19443a544194SStefano Zampini /* Layout does not admit a pointwise block size */ 19453a544194SStefano Zampini fieldNc[f] = 1; 19463a544194SStefano Zampini } 19473a544194SStefano Zampini fieldSizes[f] += fpdof; 194837d0c07bSMatthew G Knepley } 194937d0c07bSMatthew G Knepley } 195037d0c07bSMatthew G Knepley } 195137d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(fieldSizes[f], &fieldIndices[f])); 195337d0c07bSMatthew G Knepley fieldSizes[f] = 0; 195437d0c07bSMatthew G Knepley } 195537d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 195637d0c07bSMatthew G Knepley PetscInt gdof, goff; 195737d0c07bSMatthew G Knepley 19589566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 195937d0c07bSMatthew G Knepley if (gdof > 0) { 19609566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &goff)); 196137d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 196237d0c07bSMatthew G Knepley PetscInt fdof, fcdof, fc; 196337d0c07bSMatthew G Knepley 19649566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19659566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 1966ad540459SPierre Jolivet for (fc = 0; fc < fdof - fcdof; ++fc, ++fieldSizes[f]) fieldIndices[f][fieldSizes[f]] = goff++; 196737d0c07bSMatthew G Knepley } 196837d0c07bSMatthew G Knepley } 196937d0c07bSMatthew G Knepley } 19708865f1eaSKarl Rupp if (numFields) *numFields = nF; 197137d0c07bSMatthew G Knepley if (fieldNames) { 19729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fieldNames)); 197337d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 197437d0c07bSMatthew G Knepley const char *fieldName; 197537d0c07bSMatthew G Knepley 19769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 19779566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(fieldName, (char **)&(*fieldNames)[f])); 197837d0c07bSMatthew G Knepley } 197937d0c07bSMatthew G Knepley } 198037d0c07bSMatthew G Knepley if (fields) { 19819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fields)); 198237d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19833a544194SStefano Zampini PetscInt bs, in[2], out[2]; 19843a544194SStefano Zampini 19859566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), fieldSizes[f], fieldIndices[f], PETSC_OWN_POINTER, &(*fields)[f])); 19863a544194SStefano Zampini in[0] = -fieldNc[f]; 19873a544194SStefano Zampini in[1] = fieldNc[f]; 19881c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 19893a544194SStefano Zampini bs = (-out[0] == out[1]) ? out[1] : 1; 19909566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize((*fields)[f], bs)); 199137d0c07bSMatthew G Knepley } 199237d0c07bSMatthew G Knepley } 19939566063dSJacob Faibussowitsch PetscCall(PetscFree3(fieldSizes, fieldNc, fieldIndices)); 1994dbbe0bcdSBarry Smith } else PetscTryTypeMethod(dm, createfieldis, numFields, fieldNames, fields); 19953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19964d343eeaSMatthew G Knepley } 19974d343eeaSMatthew G Knepley 199816621825SDmitry Karpeev /*@C 1999bb7acecfSBarry Smith DMCreateFieldDecomposition - Returns a list of `IS` objects defining a decomposition of a problem into subproblems 2000a4e35b19SJacob Faibussowitsch corresponding to different fields. 2001e7c4fc90SDmitry Karpeev 200220f4b53cSBarry Smith Not Collective; No Fortran Support 2003e7c4fc90SDmitry Karpeev 2004e7c4fc90SDmitry Karpeev Input Parameter: 2005bb7acecfSBarry Smith . dm - the `DM` object 2006e7c4fc90SDmitry Karpeev 2007e7c4fc90SDmitry Karpeev Output Parameters: 200820f4b53cSBarry Smith + len - The number of fields (or `NULL` if not requested) 200920f4b53cSBarry Smith . namelist - The name for each field (or `NULL` if not requested) 201020f4b53cSBarry Smith . islist - The global indices for each field (or `NULL` if not requested) 201120f4b53cSBarry Smith - dmlist - The `DM`s for each field subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined) 2012e7c4fc90SDmitry Karpeev 2013e7c4fc90SDmitry Karpeev Level: intermediate 2014e7c4fc90SDmitry Karpeev 2015a4e35b19SJacob Faibussowitsch Notes: 2016a4e35b19SJacob Faibussowitsch Each `IS` contains the global indices of the dofs of the corresponding field, defined by 2017a4e35b19SJacob Faibussowitsch `DMAddField()`. The optional list of `DM`s define the `DM` for each subproblem. 2018a4e35b19SJacob Faibussowitsch 2019a4e35b19SJacob Faibussowitsch The same as `DMCreateFieldIS()` but also returns a `DM` for each field. 2020a4e35b19SJacob Faibussowitsch 202173ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with 202273ff1848SBarry Smith `PetscFree()`, every entry of `islist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`, 2023bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 2024e7c4fc90SDmitry Karpeev 202560225df5SJacob Faibussowitsch Developer Notes: 2026bb7acecfSBarry Smith It is not clear why this function and `DMCreateFieldIS()` exist. Having two seems redundant and confusing. 2027bb7acecfSBarry Smith 202873ff1848SBarry Smith Unlike `DMRefine()`, `DMCoarsen()`, and `DMCreateDomainDecomposition()` this provides no mechanism to provide hooks that are called after the 202973ff1848SBarry Smith decomposition is computed. 203073ff1848SBarry Smith 203173ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMCreateFieldIS()`, `DMCreateSubDM()`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()` 2032e7c4fc90SDmitry Karpeev @*/ 2033d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldDecomposition(DM dm, PetscInt *len, char ***namelist, IS **islist, DM **dmlist) 2034d71ae5a4SJacob Faibussowitsch { 2035e7c4fc90SDmitry Karpeev PetscFunctionBegin; 2036e7c4fc90SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 20378865f1eaSKarl Rupp if (len) { 20384f572ea9SToby Isaac PetscAssertPointer(len, 2); 20398865f1eaSKarl Rupp *len = 0; 20408865f1eaSKarl Rupp } 20418865f1eaSKarl Rupp if (namelist) { 20424f572ea9SToby Isaac PetscAssertPointer(namelist, 3); 2043ea78f98cSLisandro Dalcin *namelist = NULL; 20448865f1eaSKarl Rupp } 20458865f1eaSKarl Rupp if (islist) { 20464f572ea9SToby Isaac PetscAssertPointer(islist, 4); 2047ea78f98cSLisandro Dalcin *islist = NULL; 20488865f1eaSKarl Rupp } 20498865f1eaSKarl Rupp if (dmlist) { 20504f572ea9SToby Isaac PetscAssertPointer(dmlist, 5); 2051ea78f98cSLisandro Dalcin *dmlist = NULL; 20528865f1eaSKarl Rupp } 2053f3f0edfdSDmitry Karpeev /* 2054f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2055f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2056f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2057f3f0edfdSDmitry Karpeev */ 20587a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 205916621825SDmitry Karpeev if (!dm->ops->createfielddecomposition) { 2060435a35e8SMatthew G Knepley PetscSection section; 2061435a35e8SMatthew G Knepley PetscInt numFields, f; 2062435a35e8SMatthew G Knepley 20639566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 20649566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(section, &numFields)); 2065435a35e8SMatthew G Knepley if (section && numFields && dm->ops->createsubdm) { 2066f25d98f1SMatthew G. Knepley if (len) *len = numFields; 20679566063dSJacob Faibussowitsch if (namelist) PetscCall(PetscMalloc1(numFields, namelist)); 20689566063dSJacob Faibussowitsch if (islist) PetscCall(PetscMalloc1(numFields, islist)); 20699566063dSJacob Faibussowitsch if (dmlist) PetscCall(PetscMalloc1(numFields, dmlist)); 2070435a35e8SMatthew G Knepley for (f = 0; f < numFields; ++f) { 2071435a35e8SMatthew G Knepley const char *fieldName; 2072435a35e8SMatthew G Knepley 20739566063dSJacob Faibussowitsch PetscCall(DMCreateSubDM(dm, 1, &f, islist ? &(*islist)[f] : NULL, dmlist ? &(*dmlist)[f] : NULL)); 207403dc3394SMatthew G. Knepley if (namelist) { 20759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 20769566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(fieldName, (char **)&(*namelist)[f])); 2077435a35e8SMatthew G Knepley } 207803dc3394SMatthew G. Knepley } 2079435a35e8SMatthew G Knepley } else { 20809566063dSJacob Faibussowitsch PetscCall(DMCreateFieldIS(dm, len, namelist, islist)); 2081e7c4fc90SDmitry Karpeev /* By default there are no DMs associated with subproblems. */ 20820298fd71SBarry Smith if (dmlist) *dmlist = NULL; 2083e7c4fc90SDmitry Karpeev } 2084dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, createfielddecomposition, len, namelist, islist, dmlist); 20853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 208616621825SDmitry Karpeev } 208716621825SDmitry Karpeev 2088412a4547SAlexis Marboeuf /*@C 208920f4b53cSBarry Smith DMCreateSubDM - Returns an `IS` and `DM` encapsulating a subproblem defined by the fields passed in. 209020f4b53cSBarry Smith The fields are defined by `DMCreateFieldIS()`. 2091435a35e8SMatthew G Knepley 2092435a35e8SMatthew G Knepley Not collective 2093435a35e8SMatthew G Knepley 2094435a35e8SMatthew G Knepley Input Parameters: 2095bb7acecfSBarry Smith + dm - The `DM` object 2096bb7acecfSBarry Smith . numFields - The number of fields to select 20972adcc780SMatthew G. Knepley - fields - The field numbers of the selected fields 2098435a35e8SMatthew G Knepley 2099435a35e8SMatthew G Knepley Output Parameters: 2100*b6971eaeSBarry Smith + is - The global indices for all the degrees of freedom in the new sub `DM`, use `NULL` if not needed 2101*b6971eaeSBarry Smith - subdm - The `DM` for the subproblem, use `NULL` if not needed 2102435a35e8SMatthew G Knepley 210320f4b53cSBarry Smith Level: intermediate 210420f4b53cSBarry Smith 2105bb7acecfSBarry Smith Note: 2106bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 21075d3b26e6SMatthew G. Knepley 210860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateFieldIS()`, `DMCreateFieldDecomposition()`, `DMAddField()`, `DMCreateSuperDM()`, `IS`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 2109435a35e8SMatthew G Knepley @*/ 2110d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSubDM(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm) 2111d71ae5a4SJacob Faibussowitsch { 2112435a35e8SMatthew G Knepley PetscFunctionBegin; 2113435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 21144f572ea9SToby Isaac PetscAssertPointer(fields, 3); 21154f572ea9SToby Isaac if (is) PetscAssertPointer(is, 4); 21164f572ea9SToby Isaac if (subdm) PetscAssertPointer(subdm, 5); 2117dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createsubdm, numFields, fields, is, subdm); 21183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2119435a35e8SMatthew G Knepley } 2120435a35e8SMatthew G Knepley 21212adcc780SMatthew G. Knepley /*@C 2122bb7acecfSBarry Smith DMCreateSuperDM - Returns an arrays of `IS` and `DM` encapsulating a superproblem defined by multiple `DM`s passed in. 21232adcc780SMatthew G. Knepley 21242adcc780SMatthew G. Knepley Not collective 21252adcc780SMatthew G. Knepley 2126d8d19677SJose E. Roman Input Parameters: 2127bb7acecfSBarry Smith + dms - The `DM` objects 2128bb7acecfSBarry Smith - n - The number of `DM`s 21292adcc780SMatthew G. Knepley 21302adcc780SMatthew G. Knepley Output Parameters: 2131bb7acecfSBarry Smith + is - The global indices for each of subproblem within the super `DM`, or NULL 2132bb7acecfSBarry Smith - superdm - The `DM` for the superproblem 21332adcc780SMatthew G. Knepley 213420f4b53cSBarry Smith Level: intermediate 213520f4b53cSBarry Smith 2136bb7acecfSBarry Smith Note: 2137bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 21385d3b26e6SMatthew G. Knepley 213973ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateSubDM()`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`, `DMCreateDomainDecomposition()` 21402adcc780SMatthew G. Knepley @*/ 2141d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSuperDM(DM dms[], PetscInt n, IS **is, DM *superdm) 2142d71ae5a4SJacob Faibussowitsch { 21432adcc780SMatthew G. Knepley PetscInt i; 21442adcc780SMatthew G. Knepley 21452adcc780SMatthew G. Knepley PetscFunctionBegin; 21464f572ea9SToby Isaac PetscAssertPointer(dms, 1); 2147ad540459SPierre Jolivet for (i = 0; i < n; ++i) PetscValidHeaderSpecific(dms[i], DM_CLASSID, 1); 21484f572ea9SToby Isaac if (is) PetscAssertPointer(is, 3); 21494f572ea9SToby Isaac PetscAssertPointer(superdm, 4); 2150bb7acecfSBarry Smith PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of DMs must be nonnegative: %" PetscInt_FMT, n); 2151bb7acecfSBarry Smith if (n) { 2152b9d85ea2SLisandro Dalcin DM dm = dms[0]; 215300045ab3SPierre Jolivet PetscCheck(dm->ops->createsuperdm, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No method createsuperdm for DM of type %s", ((PetscObject)dm)->type_name); 2154dbbe0bcdSBarry Smith PetscCall((*dm->ops->createsuperdm)(dms, n, is, superdm)); 21552adcc780SMatthew G. Knepley } 21563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21572adcc780SMatthew G. Knepley } 21582adcc780SMatthew G. Knepley 215916621825SDmitry Karpeev /*@C 2160a4e35b19SJacob Faibussowitsch DMCreateDomainDecomposition - Returns lists of `IS` objects defining a decomposition of a 2161a4e35b19SJacob Faibussowitsch problem into subproblems corresponding to restrictions to pairs of nested subdomains. 216216621825SDmitry Karpeev 216320f4b53cSBarry Smith Not Collective 216416621825SDmitry Karpeev 216516621825SDmitry Karpeev Input Parameter: 2166bb7acecfSBarry Smith . dm - the `DM` object 216716621825SDmitry Karpeev 216816621825SDmitry Karpeev Output Parameters: 216920f4b53cSBarry Smith + n - The number of subproblems in the domain decomposition (or `NULL` if not requested) 217020f4b53cSBarry Smith . namelist - The name for each subdomain (or `NULL` if not requested) 217173ff1848SBarry Smith . innerislist - The global indices for each inner subdomain (or `NULL`, if not requested) 217273ff1848SBarry Smith . outerislist - The global indices for each outer subdomain (or `NULL`, if not requested) 217373ff1848SBarry Smith - dmlist - The `DM`s for each subdomain subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined) 217416621825SDmitry Karpeev 217516621825SDmitry Karpeev Level: intermediate 217616621825SDmitry Karpeev 217773ff1848SBarry Smith Notes: 2178a4e35b19SJacob Faibussowitsch Each `IS` contains the global indices of the dofs of the corresponding subdomains with in the 2179a4e35b19SJacob Faibussowitsch dofs of the original `DM`. The inner subdomains conceptually define a nonoverlapping 2180a4e35b19SJacob Faibussowitsch covering, while outer subdomains can overlap. 2181a4e35b19SJacob Faibussowitsch 2182a4e35b19SJacob Faibussowitsch The optional list of `DM`s define a `DM` for each subproblem. 2183a4e35b19SJacob Faibussowitsch 218473ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with 218573ff1848SBarry Smith `PetscFree()`, every entry of `innerislist` and `outerislist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`, 2186bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 218716621825SDmitry Karpeev 2188a4e35b19SJacob Faibussowitsch Developer Notes: 218920f4b53cSBarry Smith The `dmlist` is for the inner subdomains or the outer subdomains or all subdomains? 2190bb7acecfSBarry Smith 219173ff1848SBarry Smith The names are inconsistent, the hooks use `DMSubDomainHook` which is nothing like `DMCreateDomainDecomposition()` while `DMRefineHook` is used for `DMRefine()`. 219273ff1848SBarry Smith 219373ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateFieldDecomposition()`, `DMDestroy()`, `DMCreateDomainDecompositionScatters()`, `DMView()`, `DMCreateInterpolation()`, 219473ff1848SBarry Smith `DMSubDomainHookAdd()`, `DMSubDomainHookRemove()`,`DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()` 219516621825SDmitry Karpeev @*/ 2196d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecomposition(DM dm, PetscInt *n, char ***namelist, IS **innerislist, IS **outerislist, DM **dmlist) 2197d71ae5a4SJacob Faibussowitsch { 2198be081cd6SPeter Brune DMSubDomainHookLink link; 2199be081cd6SPeter Brune PetscInt i, l; 220016621825SDmitry Karpeev 220116621825SDmitry Karpeev PetscFunctionBegin; 220216621825SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 22039371c9d4SSatish Balay if (n) { 22044f572ea9SToby Isaac PetscAssertPointer(n, 2); 22059371c9d4SSatish Balay *n = 0; 22069371c9d4SSatish Balay } 22079371c9d4SSatish Balay if (namelist) { 22084f572ea9SToby Isaac PetscAssertPointer(namelist, 3); 22099371c9d4SSatish Balay *namelist = NULL; 22109371c9d4SSatish Balay } 22119371c9d4SSatish Balay if (innerislist) { 22124f572ea9SToby Isaac PetscAssertPointer(innerislist, 4); 22139371c9d4SSatish Balay *innerislist = NULL; 22149371c9d4SSatish Balay } 22159371c9d4SSatish Balay if (outerislist) { 22164f572ea9SToby Isaac PetscAssertPointer(outerislist, 5); 22179371c9d4SSatish Balay *outerislist = NULL; 22189371c9d4SSatish Balay } 22199371c9d4SSatish Balay if (dmlist) { 22204f572ea9SToby Isaac PetscAssertPointer(dmlist, 6); 22219371c9d4SSatish Balay *dmlist = NULL; 22229371c9d4SSatish Balay } 2223f3f0edfdSDmitry Karpeev /* 2224f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2225f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2226f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2227f3f0edfdSDmitry Karpeev */ 22287a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 222916621825SDmitry Karpeev if (dm->ops->createdomaindecomposition) { 2230dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createdomaindecomposition, &l, namelist, innerislist, outerislist, dmlist); 223114a18fd3SPeter Brune /* copy subdomain hooks and context over to the subdomain DMs */ 2232f891f5b9SPatrick Sanan if (dmlist && *dmlist) { 2233be081cd6SPeter Brune for (i = 0; i < l; i++) { 2234be081cd6SPeter Brune for (link = dm->subdomainhook; link; link = link->next) { 22359566063dSJacob Faibussowitsch if (link->ddhook) PetscCall((*link->ddhook)(dm, (*dmlist)[i], link->ctx)); 2236be081cd6SPeter Brune } 2237648262bbSPatrick Sanan if (dm->ctx) (*dmlist)[i]->ctx = dm->ctx; 2238e7c4fc90SDmitry Karpeev } 223914a18fd3SPeter Brune } 2240bb7acecfSBarry Smith if (n) *n = l; 224114a18fd3SPeter Brune } 22423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2243e30e807fSPeter Brune } 2244e30e807fSPeter Brune 2245e30e807fSPeter Brune /*@C 224673ff1848SBarry Smith DMCreateDomainDecompositionScatters - Returns scatters to the subdomain vectors from the global vector for subdomains created with 224773ff1848SBarry Smith `DMCreateDomainDecomposition()` 2248e30e807fSPeter Brune 224920f4b53cSBarry Smith Not Collective 2250e30e807fSPeter Brune 2251e30e807fSPeter Brune Input Parameters: 2252bb7acecfSBarry Smith + dm - the `DM` object 225373ff1848SBarry Smith . n - the number of subdomains 2254e30e807fSPeter Brune - subdms - the local subdomains 2255e30e807fSPeter Brune 2256e30e807fSPeter Brune Output Parameters: 22576b867d5aSJose E. Roman + iscat - scatter from global vector to nonoverlapping global vector entries on subdomain 2258e30e807fSPeter Brune . oscat - scatter from global vector to overlapping global vector entries on subdomain 2259e30e807fSPeter Brune - gscat - scatter from global vector to local vector on subdomain (fills in ghosts) 2260e30e807fSPeter Brune 226120f4b53cSBarry Smith Level: developer 226220f4b53cSBarry Smith 2263bb7acecfSBarry Smith Note: 2264bb7acecfSBarry Smith This is an alternative to the iis and ois arguments in `DMCreateDomainDecomposition()` that allow for the solution 2265e30e807fSPeter Brune of general nonlinear problems with overlapping subdomain methods. While merely having index sets that enable subsets 2266e30e807fSPeter Brune of the residual equations to be created is fine for linear problems, nonlinear problems require local assembly of 2267e30e807fSPeter Brune solution and residual data. 2268e30e807fSPeter Brune 226973ff1848SBarry Smith Developer Note: 2270a4e35b19SJacob Faibussowitsch Can the subdms input be anything or are they exactly the `DM` obtained from 2271a4e35b19SJacob Faibussowitsch `DMCreateDomainDecomposition()`? 2272bb7acecfSBarry Smith 22731cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 2274e30e807fSPeter Brune @*/ 2275d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecompositionScatters(DM dm, PetscInt n, DM *subdms, VecScatter **iscat, VecScatter **oscat, VecScatter **gscat) 2276d71ae5a4SJacob Faibussowitsch { 2277e30e807fSPeter Brune PetscFunctionBegin; 2278e30e807fSPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 22794f572ea9SToby Isaac PetscAssertPointer(subdms, 3); 2280dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createddscatters, n, subdms, iscat, oscat, gscat); 22813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2282e7c4fc90SDmitry Karpeev } 2283e7c4fc90SDmitry Karpeev 228447c6ae99SBarry Smith /*@ 2285bb7acecfSBarry Smith DMRefine - Refines a `DM` object using a standard nonadaptive refinement of the underlying mesh 228647c6ae99SBarry Smith 228720f4b53cSBarry Smith Collective 228847c6ae99SBarry Smith 2289d8d19677SJose E. Roman Input Parameters: 2290bb7acecfSBarry Smith + dm - the `DM` object 2291bb7acecfSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`) 229247c6ae99SBarry Smith 229347c6ae99SBarry Smith Output Parameter: 229420f4b53cSBarry Smith . dmf - the refined `DM`, or `NULL` 2295ae0a1c52SMatthew G Knepley 229620f4b53cSBarry Smith Options Database Key: 2297412e9a14SMatthew G. Knepley . -dm_plex_cell_refiner <strategy> - chooses the refinement strategy, e.g. regular, tohex 2298412e9a14SMatthew G. Knepley 229947c6ae99SBarry Smith Level: developer 230047c6ae99SBarry Smith 230120f4b53cSBarry Smith Note: 230220f4b53cSBarry Smith If no refinement was done, the return value is `NULL` 230320f4b53cSBarry Smith 230473ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`, 230573ff1848SBarry Smith `DMRefineHookAdd()`, `DMRefineHookRemove()` 230647c6ae99SBarry Smith @*/ 2307d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefine(DM dm, MPI_Comm comm, DM *dmf) 2308d71ae5a4SJacob Faibussowitsch { 2309c833c3b5SJed Brown DMRefineHookLink link; 231047c6ae99SBarry Smith 231147c6ae99SBarry Smith PetscFunctionBegin; 2312732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 23139566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Refine, dm, 0, 0, 0)); 2314dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, refine, comm, dmf); 23154057135bSMatthew G Knepley if (*dmf) { 231643842a1eSJed Brown (*dmf)->ops->creatematrix = dm->ops->creatematrix; 23178865f1eaSKarl Rupp 23189566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmf)); 23198865f1eaSKarl Rupp 2320644e2e5bSBarry Smith (*dmf)->ctx = dm->ctx; 23210598a293SJed Brown (*dmf)->leveldown = dm->leveldown; 2322656b349aSBarry Smith (*dmf)->levelup = dm->levelup + 1; 23238865f1eaSKarl Rupp 23249566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmf, dm->mattype)); 2325c833c3b5SJed Brown for (link = dm->refinehook; link; link = link->next) { 23261baa6e33SBarry Smith if (link->refinehook) PetscCall((*link->refinehook)(dm, *dmf, link->ctx)); 2327c833c3b5SJed Brown } 2328c833c3b5SJed Brown } 23299566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Refine, dm, 0, 0, 0)); 23303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2331c833c3b5SJed Brown } 2332c833c3b5SJed Brown 2333bb9467b5SJed Brown /*@C 2334c833c3b5SJed Brown DMRefineHookAdd - adds a callback to be run when interpolating a nonlinear problem to a finer grid 2335c833c3b5SJed Brown 233620f4b53cSBarry Smith Logically Collective; No Fortran Support 2337c833c3b5SJed Brown 23384165533cSJose E. Roman Input Parameters: 2339bb7acecfSBarry Smith + coarse - `DM` on which to run a hook when interpolating to a finer level 2340bb7acecfSBarry Smith . refinehook - function to run when setting up the finer level 2341f826b5fcSPierre Jolivet . interphook - function to run to update data on finer levels (once per `SNESSolve()`) 234220f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2343c833c3b5SJed Brown 234420f4b53cSBarry Smith Calling sequence of `refinehook`: 2345bb7acecfSBarry Smith + coarse - coarse level `DM` 2346bb7acecfSBarry Smith . fine - fine level `DM` to interpolate problem to 2347c833c3b5SJed Brown - ctx - optional user-defined function context 2348c833c3b5SJed Brown 234920f4b53cSBarry Smith Calling sequence of `interphook`: 2350bb7acecfSBarry Smith + coarse - coarse level `DM` 2351c833c3b5SJed Brown . interp - matrix interpolating a coarse-level solution to the finer grid 2352bb7acecfSBarry Smith . fine - fine level `DM` to update 2353c833c3b5SJed Brown - ctx - optional user-defined function context 2354c833c3b5SJed Brown 2355c833c3b5SJed Brown Level: advanced 2356c833c3b5SJed Brown 2357c833c3b5SJed Brown Notes: 2358bb7acecfSBarry Smith This function is only needed if auxiliary data that is attached to the `DM`s via, for example, `PetscObjectCompose()`, needs to be 2359bb7acecfSBarry Smith passed to fine grids while grid sequencing. 2360bb7acecfSBarry Smith 2361bb7acecfSBarry Smith The actual interpolation is done when `DMInterpolate()` is called. 2362c833c3b5SJed Brown 2363c833c3b5SJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 2364c833c3b5SJed Brown 23651cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2366c833c3b5SJed Brown @*/ 2367a4e35b19SJacob Faibussowitsch PetscErrorCode DMRefineHookAdd(DM coarse, PetscErrorCode (*refinehook)(DM coarse, DM fine, void *ctx), PetscErrorCode (*interphook)(DM coarse, Mat interp, DM fine, void *ctx), void *ctx) 2368d71ae5a4SJacob Faibussowitsch { 2369c833c3b5SJed Brown DMRefineHookLink link, *p; 2370c833c3b5SJed Brown 2371c833c3b5SJed Brown PetscFunctionBegin; 2372c833c3b5SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 23733d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 23743ba16761SJacob Faibussowitsch if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 23753d8e3701SJed Brown } 23769566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2377c833c3b5SJed Brown link->refinehook = refinehook; 2378c833c3b5SJed Brown link->interphook = interphook; 2379c833c3b5SJed Brown link->ctx = ctx; 23800298fd71SBarry Smith link->next = NULL; 2381c833c3b5SJed Brown *p = link; 23823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2383c833c3b5SJed Brown } 2384c833c3b5SJed Brown 23853d8e3701SJed Brown /*@C 2386bb7acecfSBarry Smith DMRefineHookRemove - remove a callback from the list of hooks, that have been set with `DMRefineHookAdd()`, to be run when interpolating 2387bb7acecfSBarry Smith a nonlinear problem to a finer grid 23883d8e3701SJed Brown 238920f4b53cSBarry Smith Logically Collective; No Fortran Support 23903d8e3701SJed Brown 23914165533cSJose E. Roman Input Parameters: 2392bb7acecfSBarry Smith + coarse - the `DM` on which to run a hook when restricting to a coarser level 2393bb7acecfSBarry Smith . refinehook - function to run when setting up a finer level 2394bb7acecfSBarry Smith . interphook - function to run to update data on finer levels 239520f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 23963d8e3701SJed Brown 23973d8e3701SJed Brown Level: advanced 23983d8e3701SJed Brown 2399bb7acecfSBarry Smith Note: 24003d8e3701SJed Brown This function does nothing if the hook is not in the list. 24013d8e3701SJed Brown 24021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `DMCoarsenHookRemove()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 24033d8e3701SJed Brown @*/ 2404d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookRemove(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx) 2405d71ae5a4SJacob Faibussowitsch { 24063d8e3701SJed Brown DMRefineHookLink link, *p; 24073d8e3701SJed Brown 24083d8e3701SJed Brown PetscFunctionBegin; 24093d8e3701SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 24103d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 24113d8e3701SJed Brown if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) { 24123d8e3701SJed Brown link = *p; 24133d8e3701SJed Brown *p = link->next; 24149566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 24153d8e3701SJed Brown break; 24163d8e3701SJed Brown } 24173d8e3701SJed Brown } 24183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24193d8e3701SJed Brown } 24203d8e3701SJed Brown 2421c833c3b5SJed Brown /*@ 2422bb7acecfSBarry Smith DMInterpolate - interpolates user-defined problem data attached to a `DM` to a finer `DM` by running hooks registered by `DMRefineHookAdd()` 2423c833c3b5SJed Brown 2424c833c3b5SJed Brown Collective if any hooks are 2425c833c3b5SJed Brown 24264165533cSJose E. Roman Input Parameters: 2427bb7acecfSBarry Smith + coarse - coarser `DM` to use as a base 2428bb7acecfSBarry Smith . interp - interpolation matrix, apply using `MatInterpolate()` 2429bb7acecfSBarry Smith - fine - finer `DM` to update 2430c833c3b5SJed Brown 2431c833c3b5SJed Brown Level: developer 2432c833c3b5SJed Brown 243373ff1848SBarry Smith Developer Note: 2434bb7acecfSBarry Smith This routine is called `DMInterpolate()` while the hook is called `DMRefineHookAdd()`. It would be better to have an 2435bb7acecfSBarry Smith an API with consistent terminology. 2436bb7acecfSBarry Smith 24371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `MatInterpolate()` 2438c833c3b5SJed Brown @*/ 2439d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolate(DM coarse, Mat interp, DM fine) 2440d71ae5a4SJacob Faibussowitsch { 2441c833c3b5SJed Brown DMRefineHookLink link; 2442c833c3b5SJed Brown 2443c833c3b5SJed Brown PetscFunctionBegin; 2444c833c3b5SJed Brown for (link = fine->refinehook; link; link = link->next) { 24451baa6e33SBarry Smith if (link->interphook) PetscCall((*link->interphook)(coarse, interp, fine, link->ctx)); 24464057135bSMatthew G Knepley } 24473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 244847c6ae99SBarry Smith } 244947c6ae99SBarry Smith 2450eb3f98d2SBarry Smith /*@ 24511f3379b2SToby Isaac DMInterpolateSolution - Interpolates a solution from a coarse mesh to a fine mesh. 24521f3379b2SToby Isaac 245320f4b53cSBarry Smith Collective 24541f3379b2SToby Isaac 24554165533cSJose E. Roman Input Parameters: 2456bb7acecfSBarry Smith + coarse - coarse `DM` 2457bb7acecfSBarry Smith . fine - fine `DM` 2458bb7acecfSBarry Smith . interp - (optional) the matrix computed by `DMCreateInterpolation()`. Implementations may not need this, but if it 2459bb7acecfSBarry Smith is available it can avoid some recomputation. If it is provided, `MatInterpolate()` will be used if 2460bb7acecfSBarry Smith the coarse `DM` does not have a specialized implementation. 24611f3379b2SToby Isaac - coarseSol - solution on the coarse mesh 24621f3379b2SToby Isaac 24634165533cSJose E. Roman Output Parameter: 24641f3379b2SToby Isaac . fineSol - the interpolation of coarseSol to the fine mesh 24651f3379b2SToby Isaac 24661f3379b2SToby Isaac Level: developer 24671f3379b2SToby Isaac 2468bb7acecfSBarry Smith Note: 2469bb7acecfSBarry Smith This function exists because the interpolation of a solution vector between meshes is not always a linear 24701f3379b2SToby Isaac map. For example, if a boundary value problem has an inhomogeneous Dirichlet boundary condition that is compressed 24711f3379b2SToby Isaac out of the solution vector. Or if interpolation is inherently a nonlinear operation, such as a method using 24721f3379b2SToby Isaac slope-limiting reconstruction. 24731f3379b2SToby Isaac 247473ff1848SBarry Smith Developer Note: 2475bb7acecfSBarry Smith This doesn't just interpolate "solutions" so its API name is questionable. 2476bb7acecfSBarry Smith 24771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMInterpolate()`, `DMCreateInterpolation()` 24781f3379b2SToby Isaac @*/ 2479d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolateSolution(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol) 2480d71ae5a4SJacob Faibussowitsch { 24811f3379b2SToby Isaac PetscErrorCode (*interpsol)(DM, DM, Mat, Vec, Vec) = NULL; 24821f3379b2SToby Isaac 24831f3379b2SToby Isaac PetscFunctionBegin; 24841f3379b2SToby Isaac PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 24851f3379b2SToby Isaac if (interp) PetscValidHeaderSpecific(interp, MAT_CLASSID, 3); 24861f3379b2SToby Isaac PetscValidHeaderSpecific(coarseSol, VEC_CLASSID, 4); 24871f3379b2SToby Isaac PetscValidHeaderSpecific(fineSol, VEC_CLASSID, 5); 24881f3379b2SToby Isaac 24899566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)coarse, "DMInterpolateSolution_C", &interpsol)); 24901f3379b2SToby Isaac if (interpsol) { 24919566063dSJacob Faibussowitsch PetscCall((*interpsol)(coarse, fine, interp, coarseSol, fineSol)); 24921f3379b2SToby Isaac } else if (interp) { 24939566063dSJacob Faibussowitsch PetscCall(MatInterpolate(interp, coarseSol, fineSol)); 249498921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)coarse), PETSC_ERR_SUP, "DM %s does not implement DMInterpolateSolution()", ((PetscObject)coarse)->type_name); 24953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24961f3379b2SToby Isaac } 24971f3379b2SToby Isaac 24981f3379b2SToby Isaac /*@ 2499bb7acecfSBarry Smith DMGetRefineLevel - Gets the number of refinements that have generated this `DM` from some initial `DM`. 2500eb3f98d2SBarry Smith 2501eb3f98d2SBarry Smith Not Collective 2502eb3f98d2SBarry Smith 2503eb3f98d2SBarry Smith Input Parameter: 2504bb7acecfSBarry Smith . dm - the `DM` object 2505eb3f98d2SBarry Smith 2506eb3f98d2SBarry Smith Output Parameter: 2507eb3f98d2SBarry Smith . level - number of refinements 2508eb3f98d2SBarry Smith 2509eb3f98d2SBarry Smith Level: developer 2510eb3f98d2SBarry Smith 2511bb7acecfSBarry Smith Note: 2512bb7acecfSBarry Smith This can be used, by example, to set the number of coarser levels associated with this `DM` for a multigrid solver. 2513bb7acecfSBarry Smith 25141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2515eb3f98d2SBarry Smith @*/ 2516d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRefineLevel(DM dm, PetscInt *level) 2517d71ae5a4SJacob Faibussowitsch { 2518eb3f98d2SBarry Smith PetscFunctionBegin; 2519eb3f98d2SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2520eb3f98d2SBarry Smith *level = dm->levelup; 25213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2522eb3f98d2SBarry Smith } 2523eb3f98d2SBarry Smith 2524fef3a512SBarry Smith /*@ 2525bb7acecfSBarry Smith DMSetRefineLevel - Sets the number of refinements that have generated this `DM`. 2526fef3a512SBarry Smith 2527fef3a512SBarry Smith Not Collective 2528fef3a512SBarry Smith 2529d8d19677SJose E. Roman Input Parameters: 2530bb7acecfSBarry Smith + dm - the `DM` object 2531fef3a512SBarry Smith - level - number of refinements 2532fef3a512SBarry Smith 2533fef3a512SBarry Smith Level: advanced 2534fef3a512SBarry Smith 253595452b02SPatrick Sanan Notes: 2536bb7acecfSBarry Smith This value is used by `PCMG` to determine how many multigrid levels to use 2537fef3a512SBarry Smith 2538bb7acecfSBarry Smith The values are usually set automatically by the process that is causing the refinements of an initial `DM` by calling this routine. 2539bb7acecfSBarry Smith 25401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRefineLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2541fef3a512SBarry Smith @*/ 2542d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRefineLevel(DM dm, PetscInt level) 2543d71ae5a4SJacob Faibussowitsch { 2544fef3a512SBarry Smith PetscFunctionBegin; 2545fef3a512SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2546fef3a512SBarry Smith dm->levelup = level; 25473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2548fef3a512SBarry Smith } 2549fef3a512SBarry Smith 2550d410b0cfSMatthew G. Knepley /*@ 2551bb7acecfSBarry Smith DMExtrude - Extrude a `DM` object from a surface 2552d410b0cfSMatthew G. Knepley 255320f4b53cSBarry Smith Collective 2554d410b0cfSMatthew G. Knepley 2555f1a722f8SMatthew G. Knepley Input Parameters: 2556bb7acecfSBarry Smith + dm - the `DM` object 2557d410b0cfSMatthew G. Knepley - layers - the number of extruded cell layers 2558d410b0cfSMatthew G. Knepley 2559d410b0cfSMatthew G. Knepley Output Parameter: 256020f4b53cSBarry Smith . dme - the extruded `DM`, or `NULL` 2561d410b0cfSMatthew G. Knepley 2562d410b0cfSMatthew G. Knepley Level: developer 2563d410b0cfSMatthew G. Knepley 256420f4b53cSBarry Smith Note: 256520f4b53cSBarry Smith If no extrusion was done, the return value is `NULL` 256620f4b53cSBarry Smith 25671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()` 2568d410b0cfSMatthew G. Knepley @*/ 2569d71ae5a4SJacob Faibussowitsch PetscErrorCode DMExtrude(DM dm, PetscInt layers, DM *dme) 2570d71ae5a4SJacob Faibussowitsch { 2571d410b0cfSMatthew G. Knepley PetscFunctionBegin; 2572d410b0cfSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2573dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, extrude, layers, dme); 2574d410b0cfSMatthew G. Knepley if (*dme) { 2575d410b0cfSMatthew G. Knepley (*dme)->ops->creatematrix = dm->ops->creatematrix; 25769566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dme)); 2577d410b0cfSMatthew G. Knepley (*dme)->ctx = dm->ctx; 25789566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dme, dm->mattype)); 2579d410b0cfSMatthew G. Knepley } 25803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2581d410b0cfSMatthew G. Knepley } 2582d410b0cfSMatthew G. Knepley 2583d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformDM_Internal(DM dm, DM *tdm) 2584d71ae5a4SJacob Faibussowitsch { 2585ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2586ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 25874f572ea9SToby Isaac PetscAssertPointer(tdm, 2); 2588ca3d3a14SMatthew G. Knepley *tdm = dm->transformDM; 25893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2590ca3d3a14SMatthew G. Knepley } 2591ca3d3a14SMatthew G. Knepley 2592d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformVec_Internal(DM dm, Vec *tv) 2593d71ae5a4SJacob Faibussowitsch { 2594ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2595ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 25964f572ea9SToby Isaac PetscAssertPointer(tv, 2); 2597ca3d3a14SMatthew G. Knepley *tv = dm->transform; 25983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2599ca3d3a14SMatthew G. Knepley } 2600ca3d3a14SMatthew G. Knepley 2601ca3d3a14SMatthew G. Knepley /*@ 2602bb7acecfSBarry Smith DMHasBasisTransform - Whether the `DM` employs a basis transformation from functions in global vectors to functions in local vectors 2603ca3d3a14SMatthew G. Knepley 2604ca3d3a14SMatthew G. Knepley Input Parameter: 260520f4b53cSBarry Smith . dm - The `DM` 2606ca3d3a14SMatthew G. Knepley 2607ca3d3a14SMatthew G. Knepley Output Parameter: 260820f4b53cSBarry Smith . flg - `PETSC_TRUE` if a basis transformation should be done 2609ca3d3a14SMatthew G. Knepley 2610ca3d3a14SMatthew G. Knepley Level: developer 2611ca3d3a14SMatthew G. Knepley 26121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`, `DMPlexCreateBasisRotation()` 2613ca3d3a14SMatthew G. Knepley @*/ 2614d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasBasisTransform(DM dm, PetscBool *flg) 2615d71ae5a4SJacob Faibussowitsch { 2616ca3d3a14SMatthew G. Knepley Vec tv; 2617ca3d3a14SMatthew G. Knepley 2618ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2619ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26204f572ea9SToby Isaac PetscAssertPointer(flg, 2); 26219566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 2622ca3d3a14SMatthew G. Knepley *flg = tv ? PETSC_TRUE : PETSC_FALSE; 26233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2624ca3d3a14SMatthew G. Knepley } 2625ca3d3a14SMatthew G. Knepley 2626d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConstructBasisTransform_Internal(DM dm) 2627d71ae5a4SJacob Faibussowitsch { 2628ca3d3a14SMatthew G. Knepley PetscSection s, ts; 2629ca3d3a14SMatthew G. Knepley PetscScalar *ta; 2630ca3d3a14SMatthew G. Knepley PetscInt cdim, pStart, pEnd, p, Nf, f, Nc, dof; 2631ca3d3a14SMatthew G. Knepley 2632ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 26339566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 26349566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 26359566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 26369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 26379566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->transformDM)); 26389566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm->transformDM, &ts)); 26399566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(ts, Nf)); 26409566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(ts, pStart, pEnd)); 2641ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(s, f, &Nc)); 2643ca3d3a14SMatthew G. Knepley /* We could start to label fields by their transformation properties */ 2644ca3d3a14SMatthew G. Knepley if (Nc != cdim) continue; 2645ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 26469566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, p, f, &dof)); 2647ca3d3a14SMatthew G. Knepley if (!dof) continue; 26489566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(ts, p, f, PetscSqr(cdim))); 26499566063dSJacob Faibussowitsch PetscCall(PetscSectionAddDof(ts, p, PetscSqr(cdim))); 2650ca3d3a14SMatthew G. Knepley } 2651ca3d3a14SMatthew G. Knepley } 26529566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(ts)); 26539566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(dm->transformDM, &dm->transform)); 26549566063dSJacob Faibussowitsch PetscCall(VecGetArray(dm->transform, &ta)); 2655ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 2656ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof)); 2658ca3d3a14SMatthew G. Knepley if (dof) { 2659ca3d3a14SMatthew G. Knepley PetscReal x[3] = {0.0, 0.0, 0.0}; 2660ca3d3a14SMatthew G. Knepley PetscScalar *tva; 2661ca3d3a14SMatthew G. Knepley const PetscScalar *A; 2662ca3d3a14SMatthew G. Knepley 2663ca3d3a14SMatthew G. Knepley /* TODO Get quadrature point for this dual basis vector for coordinate */ 26649566063dSJacob Faibussowitsch PetscCall((*dm->transformGetMatrix)(dm, x, PETSC_TRUE, &A, dm->transformCtx)); 26659566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm->transformDM, p, f, ta, (void *)&tva)); 26669566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tva, A, PetscSqr(cdim))); 2667ca3d3a14SMatthew G. Knepley } 2668ca3d3a14SMatthew G. Knepley } 2669ca3d3a14SMatthew G. Knepley } 26709566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(dm->transform, &ta)); 26713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2672ca3d3a14SMatthew G. Knepley } 2673ca3d3a14SMatthew G. Knepley 2674d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyTransform(DM dm, DM newdm) 2675d71ae5a4SJacob Faibussowitsch { 2676ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2677ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2678ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(newdm, DM_CLASSID, 2); 2679ca3d3a14SMatthew G. Knepley newdm->transformCtx = dm->transformCtx; 2680ca3d3a14SMatthew G. Knepley newdm->transformSetUp = dm->transformSetUp; 2681ca3d3a14SMatthew G. Knepley newdm->transformDestroy = NULL; 2682ca3d3a14SMatthew G. Knepley newdm->transformGetMatrix = dm->transformGetMatrix; 26839566063dSJacob Faibussowitsch if (newdm->transformSetUp) PetscCall(DMConstructBasisTransform_Internal(newdm)); 26843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2685ca3d3a14SMatthew G. Knepley } 2686ca3d3a14SMatthew G. Knepley 2687bb9467b5SJed Brown /*@C 2688bb7acecfSBarry Smith DMGlobalToLocalHookAdd - adds a callback to be run when `DMGlobalToLocal()` is called 2689baf369e7SPeter Brune 269020f4b53cSBarry Smith Logically Collective 2691baf369e7SPeter Brune 26924165533cSJose E. Roman Input Parameters: 2693bb7acecfSBarry Smith + dm - the `DM` 2694bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMGlobalToLocalBegin()` 2695bb7acecfSBarry Smith . endhook - function to run after `DMGlobalToLocalEnd()` has completed 269620f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2697baf369e7SPeter Brune 269820f4b53cSBarry Smith Calling sequence of `beginhook`: 2699a4e35b19SJacob Faibussowitsch + dm - global `DM` 2700baf369e7SPeter Brune . g - global vector 2701baf369e7SPeter Brune . mode - mode 2702baf369e7SPeter Brune . l - local vector 2703baf369e7SPeter Brune - ctx - optional user-defined function context 2704baf369e7SPeter Brune 270520f4b53cSBarry Smith Calling sequence of `endhook`: 2706a4e35b19SJacob Faibussowitsch + dm - global `DM` 2707a4e35b19SJacob Faibussowitsch . g - global vector 2708a4e35b19SJacob Faibussowitsch . mode - mode 2709a4e35b19SJacob Faibussowitsch . l - local vector 2710baf369e7SPeter Brune - ctx - optional user-defined function context 2711baf369e7SPeter Brune 2712baf369e7SPeter Brune Level: advanced 2713baf369e7SPeter Brune 2714bb7acecfSBarry Smith Note: 2715bb7acecfSBarry Smith The hook may be used to provide, for example, values that represent boundary conditions in the local vectors that do not exist on the global vector. 2716bb7acecfSBarry Smith 27171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocal()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2718baf369e7SPeter Brune @*/ 2719a4e35b19SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), PetscErrorCode (*endhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), void *ctx) 2720d71ae5a4SJacob Faibussowitsch { 2721baf369e7SPeter Brune DMGlobalToLocalHookLink link, *p; 2722baf369e7SPeter Brune 2723baf369e7SPeter Brune PetscFunctionBegin; 2724baf369e7SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2725baf369e7SPeter Brune for (p = &dm->gtolhook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 27269566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2727baf369e7SPeter Brune link->beginhook = beginhook; 2728baf369e7SPeter Brune link->endhook = endhook; 2729baf369e7SPeter Brune link->ctx = ctx; 27300298fd71SBarry Smith link->next = NULL; 2731baf369e7SPeter Brune *p = link; 27323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2733baf369e7SPeter Brune } 2734baf369e7SPeter Brune 2735d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGlobalToLocalHook_Constraints(DM dm, Vec g, InsertMode mode, Vec l, void *ctx) 2736d71ae5a4SJacob Faibussowitsch { 27374c274da1SToby Isaac Mat cMat; 273879769bd5SJed Brown Vec cVec, cBias; 27394c274da1SToby Isaac PetscSection section, cSec; 27404c274da1SToby Isaac PetscInt pStart, pEnd, p, dof; 27414c274da1SToby Isaac 27424c274da1SToby Isaac PetscFunctionBegin; 2743a4e35b19SJacob Faibussowitsch (void)g; 2744a4e35b19SJacob Faibussowitsch (void)ctx; 27454c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 27469566063dSJacob Faibussowitsch PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, &cBias)); 27474c274da1SToby Isaac if (cMat && (mode == INSERT_VALUES || mode == INSERT_ALL_VALUES || mode == INSERT_BC_VALUES)) { 27485db9a05bSToby Isaac PetscInt nRows; 27495db9a05bSToby Isaac 27509566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 27513ba16761SJacob Faibussowitsch if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS); 27529566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 27539566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 27549566063dSJacob Faibussowitsch PetscCall(MatMult(cMat, l, cVec)); 27559566063dSJacob Faibussowitsch if (cBias) PetscCall(VecAXPY(cVec, 1., cBias)); 27569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 27574c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 27589566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 27594c274da1SToby Isaac if (dof) { 27604c274da1SToby Isaac PetscScalar *vals; 27619566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(cVec, cSec, p, &vals)); 27629566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(l, section, p, vals, INSERT_ALL_VALUES)); 27634c274da1SToby Isaac } 27644c274da1SToby Isaac } 27659566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 27664c274da1SToby Isaac } 27673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27684c274da1SToby Isaac } 27694c274da1SToby Isaac 277047c6ae99SBarry Smith /*@ 277101729b5cSPatrick Sanan DMGlobalToLocal - update local vectors from global vector 277201729b5cSPatrick Sanan 277320f4b53cSBarry Smith Neighbor-wise Collective 277401729b5cSPatrick Sanan 277501729b5cSPatrick Sanan Input Parameters: 2776bb7acecfSBarry Smith + dm - the `DM` object 277701729b5cSPatrick Sanan . g - the global vector 2778bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 277901729b5cSPatrick Sanan - l - the local vector 278001729b5cSPatrick Sanan 278120f4b53cSBarry Smith Level: beginner 278220f4b53cSBarry Smith 278301729b5cSPatrick Sanan Notes: 2784bb7acecfSBarry Smith The communication involved in this update can be overlapped with computation by instead using 2785bb7acecfSBarry Smith `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()`. 2786bb7acecfSBarry Smith 2787bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 278801729b5cSPatrick Sanan 27891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocalHookAdd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, 279060225df5SJacob Faibussowitsch `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, 2791bb7acecfSBarry Smith `DMGlobalToLocalBegin()` `DMGlobalToLocalEnd()` 279201729b5cSPatrick Sanan @*/ 2793d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocal(DM dm, Vec g, InsertMode mode, Vec l) 2794d71ae5a4SJacob Faibussowitsch { 279501729b5cSPatrick Sanan PetscFunctionBegin; 27969566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, g, mode, l)); 27979566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, g, mode, l)); 27983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 279901729b5cSPatrick Sanan } 280001729b5cSPatrick Sanan 280101729b5cSPatrick Sanan /*@ 280247c6ae99SBarry Smith DMGlobalToLocalBegin - Begins updating local vectors from global vector 280347c6ae99SBarry Smith 280420f4b53cSBarry Smith Neighbor-wise Collective 280547c6ae99SBarry Smith 280647c6ae99SBarry Smith Input Parameters: 2807bb7acecfSBarry Smith + dm - the `DM` object 280847c6ae99SBarry Smith . g - the global vector 2809bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 281047c6ae99SBarry Smith - l - the local vector 281147c6ae99SBarry Smith 281201729b5cSPatrick Sanan Level: intermediate 281347c6ae99SBarry Smith 2814bb7acecfSBarry Smith Notes: 2815bb7acecfSBarry Smith The operation is completed with `DMGlobalToLocalEnd()` 2816bb7acecfSBarry Smith 2817bb7acecfSBarry Smith One can perform local computations between the `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` to overlap communication and computation 2818bb7acecfSBarry Smith 2819bb7acecfSBarry Smith `DMGlobalToLocal()` is a short form of `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` 2820bb7acecfSBarry Smith 2821bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 2822bb7acecfSBarry Smith 282360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()` 282447c6ae99SBarry Smith @*/ 2825d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 2826d71ae5a4SJacob Faibussowitsch { 28277128ae9fSMatthew G Knepley PetscSF sf; 2828baf369e7SPeter Brune DMGlobalToLocalHookLink link; 282947c6ae99SBarry Smith 283047c6ae99SBarry Smith PetscFunctionBegin; 2831171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2832baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 28331baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, g, mode, l, link->ctx)); 2834baf369e7SPeter Brune } 28359566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 28367128ae9fSMatthew G Knepley if (sf) { 2837ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2838ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2839d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 28407128ae9fSMatthew G Knepley 28417a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 28429566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 28439566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 28449566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(sf, MPIU_SCALAR, gmtype, gArray, lmtype, lArray, MPI_REPLACE)); 28459566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 28469566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 28477128ae9fSMatthew G Knepley } else { 2848fa1e479aSStefano Zampini PetscUseTypeMethod(dm, globaltolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 28497128ae9fSMatthew G Knepley } 28503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 285147c6ae99SBarry Smith } 285247c6ae99SBarry Smith 285347c6ae99SBarry Smith /*@ 285447c6ae99SBarry Smith DMGlobalToLocalEnd - Ends updating local vectors from global vector 285547c6ae99SBarry Smith 285620f4b53cSBarry Smith Neighbor-wise Collective 285747c6ae99SBarry Smith 285847c6ae99SBarry Smith Input Parameters: 2859bb7acecfSBarry Smith + dm - the `DM` object 286047c6ae99SBarry Smith . g - the global vector 2861bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 286247c6ae99SBarry Smith - l - the local vector 286347c6ae99SBarry Smith 286401729b5cSPatrick Sanan Level: intermediate 286547c6ae99SBarry Smith 2866bb7acecfSBarry Smith Note: 2867bb7acecfSBarry Smith See `DMGlobalToLocalBegin()` for details. 2868bb7acecfSBarry Smith 286960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()` 287047c6ae99SBarry Smith @*/ 2871d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 2872d71ae5a4SJacob Faibussowitsch { 28737128ae9fSMatthew G Knepley PetscSF sf; 2874ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2875ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2876ca3d3a14SMatthew G. Knepley PetscBool transform; 2877baf369e7SPeter Brune DMGlobalToLocalHookLink link; 2878d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 287947c6ae99SBarry Smith 288047c6ae99SBarry Smith PetscFunctionBegin; 2881171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 28829566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 28839566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 28847128ae9fSMatthew G Knepley if (sf) { 28857a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 28867128ae9fSMatthew G Knepley 28879566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 28889566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 28899566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, gArray, lArray, MPI_REPLACE)); 28909566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 28919566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 28929566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexGlobalToLocalBasis(dm, l)); 28937128ae9fSMatthew G Knepley } else { 2894fa1e479aSStefano Zampini PetscUseTypeMethod(dm, globaltolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 28957128ae9fSMatthew G Knepley } 28969566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalHook_Constraints(dm, g, mode, l, NULL)); 2897baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 28989566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 2899baf369e7SPeter Brune } 29003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 290147c6ae99SBarry Smith } 290247c6ae99SBarry Smith 2903d4d07f1eSToby Isaac /*@C 2904d4d07f1eSToby Isaac DMLocalToGlobalHookAdd - adds a callback to be run when a local to global is called 2905d4d07f1eSToby Isaac 290620f4b53cSBarry Smith Logically Collective 2907d4d07f1eSToby Isaac 29084165533cSJose E. Roman Input Parameters: 2909bb7acecfSBarry Smith + dm - the `DM` 2910bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMLocalToGlobalBegin()` 2911bb7acecfSBarry Smith . endhook - function to run after `DMLocalToGlobalEnd()` has completed 291220f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2913d4d07f1eSToby Isaac 291420f4b53cSBarry Smith Calling sequence of `beginhook`: 2915a4e35b19SJacob Faibussowitsch + global - global `DM` 2916d4d07f1eSToby Isaac . l - local vector 2917d4d07f1eSToby Isaac . mode - mode 2918d4d07f1eSToby Isaac . g - global vector 2919d4d07f1eSToby Isaac - ctx - optional user-defined function context 2920d4d07f1eSToby Isaac 292120f4b53cSBarry Smith Calling sequence of `endhook`: 2922bb7acecfSBarry Smith + global - global `DM` 2923d4d07f1eSToby Isaac . l - local vector 2924d4d07f1eSToby Isaac . mode - mode 2925d4d07f1eSToby Isaac . g - global vector 2926d4d07f1eSToby Isaac - ctx - optional user-defined function context 2927d4d07f1eSToby Isaac 2928d4d07f1eSToby Isaac Level: advanced 2929d4d07f1eSToby Isaac 29301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMRefineHookAdd()`, `DMGlobalToLocalHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2931d4d07f1eSToby Isaac @*/ 2932a4e35b19SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), PetscErrorCode (*endhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), void *ctx) 2933d71ae5a4SJacob Faibussowitsch { 2934d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, *p; 2935d4d07f1eSToby Isaac 2936d4d07f1eSToby Isaac PetscFunctionBegin; 2937d4d07f1eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2938d4d07f1eSToby Isaac for (p = &dm->ltoghook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 29399566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2940d4d07f1eSToby Isaac link->beginhook = beginhook; 2941d4d07f1eSToby Isaac link->endhook = endhook; 2942d4d07f1eSToby Isaac link->ctx = ctx; 2943d4d07f1eSToby Isaac link->next = NULL; 2944d4d07f1eSToby Isaac *p = link; 29453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2946d4d07f1eSToby Isaac } 2947d4d07f1eSToby Isaac 2948d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMLocalToGlobalHook_Constraints(DM dm, Vec l, InsertMode mode, Vec g, void *ctx) 2949d71ae5a4SJacob Faibussowitsch { 29504c274da1SToby Isaac PetscFunctionBegin; 2951a4e35b19SJacob Faibussowitsch (void)g; 2952a4e35b19SJacob Faibussowitsch (void)ctx; 29534c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29542b6b7d09SToby Isaac if (mode == ADD_VALUES || mode == ADD_ALL_VALUES || mode == ADD_BC_VALUES) { 29552b6b7d09SToby Isaac Mat cMat; 29562b6b7d09SToby Isaac Vec cVec; 29575db9a05bSToby Isaac PetscInt nRows; 29582b6b7d09SToby Isaac PetscSection section, cSec; 29592b6b7d09SToby Isaac PetscInt pStart, pEnd, p, dof; 29602b6b7d09SToby Isaac 29612b6b7d09SToby Isaac PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, NULL)); 29622b6b7d09SToby Isaac if (!cMat) PetscFunctionReturn(PETSC_SUCCESS); 29635db9a05bSToby Isaac 29649566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 29653ba16761SJacob Faibussowitsch if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS); 29669566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 29679566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 29689566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 29694c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 29709566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 29714c274da1SToby Isaac if (dof) { 29724c274da1SToby Isaac PetscInt d; 29734c274da1SToby Isaac PetscScalar *vals; 29749566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(l, section, p, &vals)); 29759566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(cVec, cSec, p, vals, mode)); 29764c274da1SToby Isaac /* for this to be the true transpose, we have to zero the values that 29774c274da1SToby Isaac * we just extracted */ 2978ad540459SPierre Jolivet for (d = 0; d < dof; d++) vals[d] = 0.; 29794c274da1SToby Isaac } 29804c274da1SToby Isaac } 29819566063dSJacob Faibussowitsch PetscCall(MatMultTransposeAdd(cMat, cVec, l, l)); 29829566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 29834c274da1SToby Isaac } 29843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29854c274da1SToby Isaac } 298601729b5cSPatrick Sanan /*@ 298701729b5cSPatrick Sanan DMLocalToGlobal - updates global vectors from local vectors 298801729b5cSPatrick Sanan 298920f4b53cSBarry Smith Neighbor-wise Collective 299001729b5cSPatrick Sanan 299101729b5cSPatrick Sanan Input Parameters: 2992bb7acecfSBarry Smith + dm - the `DM` object 299301729b5cSPatrick Sanan . l - the local vector 2994bb7acecfSBarry Smith . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 299501729b5cSPatrick Sanan - g - the global vector 299601729b5cSPatrick Sanan 299720f4b53cSBarry Smith Level: beginner 299820f4b53cSBarry Smith 299901729b5cSPatrick Sanan Notes: 300001729b5cSPatrick Sanan The communication involved in this update can be overlapped with computation by using 3001bb7acecfSBarry Smith `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()`. 300201729b5cSPatrick Sanan 3003bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 3004bb7acecfSBarry Smith 3005bb7acecfSBarry Smith `INSERT_VALUES` is not supported for `DMDA`; in that case simply compute the values directly into a global vector instead of a local one. 3006bb7acecfSBarry Smith 3007bb7acecfSBarry Smith Use `DMLocalToGlobalHookAdd()` to add additional operations that are performed on the data during the update process 300801729b5cSPatrick Sanan 30091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`, `DMLocalToGlobalHookAdd()`, `DMGlobaToLocallHookAdd()` 301001729b5cSPatrick Sanan @*/ 3011d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobal(DM dm, Vec l, InsertMode mode, Vec g) 3012d71ae5a4SJacob Faibussowitsch { 301301729b5cSPatrick Sanan PetscFunctionBegin; 30149566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, l, mode, g)); 30159566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, l, mode, g)); 30163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 301701729b5cSPatrick Sanan } 30184c274da1SToby Isaac 301947c6ae99SBarry Smith /*@ 302001729b5cSPatrick Sanan DMLocalToGlobalBegin - begins updating global vectors from local vectors 30219a42bb27SBarry Smith 302220f4b53cSBarry Smith Neighbor-wise Collective 30239a42bb27SBarry Smith 30249a42bb27SBarry Smith Input Parameters: 3025bb7acecfSBarry Smith + dm - the `DM` object 3026f6813fd5SJed Brown . l - the local vector 3027aa624791SPierre Jolivet . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 30281eb28f2eSBarry Smith - g - the global vector 30299a42bb27SBarry Smith 303020f4b53cSBarry Smith Level: intermediate 303120f4b53cSBarry Smith 303295452b02SPatrick Sanan Notes: 3033bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 3034bb7acecfSBarry Smith 3035bb7acecfSBarry Smith `INSERT_VALUES is` not supported for `DMDA`, in that case simply compute the values directly into a global vector instead of a local one. 3036bb7acecfSBarry Smith 3037bb7acecfSBarry Smith Use `DMLocalToGlobalEnd()` to complete the communication process. 3038bb7acecfSBarry Smith 3039bb7acecfSBarry Smith `DMLocalToGlobal()` is a short form of `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()` 3040bb7acecfSBarry Smith 3041bb7acecfSBarry Smith `DMLocalToGlobalHookAdd()` may be used to provide additional operations that are performed during the update process. 30429a42bb27SBarry Smith 30431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()` 30449a42bb27SBarry Smith @*/ 3045d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalBegin(DM dm, Vec l, InsertMode mode, Vec g) 3046d71ae5a4SJacob Faibussowitsch { 30477128ae9fSMatthew G Knepley PetscSF sf; 304884330215SMatthew G. Knepley PetscSection s, gs; 3049d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3050ca3d3a14SMatthew G. Knepley Vec tmpl; 3051ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3052ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3053fa88e482SJed Brown PetscBool isInsert, transform, l_inplace = PETSC_FALSE, g_inplace = PETSC_FALSE; 3054d0295fc0SJunchao Zhang PetscMemType lmtype = PETSC_MEMTYPE_HOST, gmtype = PETSC_MEMTYPE_HOST; 30559a42bb27SBarry Smith 30569a42bb27SBarry Smith PetscFunctionBegin; 3057171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3058d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 30591baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, l, mode, g, link->ctx)); 3060d4d07f1eSToby Isaac } 30619566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalHook_Constraints(dm, l, mode, g, NULL)); 30629566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 30639566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 30647128ae9fSMatthew G Knepley switch (mode) { 30657128ae9fSMatthew G Knepley case INSERT_VALUES: 30667128ae9fSMatthew G Knepley case INSERT_ALL_VALUES: 3067d71ae5a4SJacob Faibussowitsch case INSERT_BC_VALUES: 3068d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3069d71ae5a4SJacob Faibussowitsch break; 30707128ae9fSMatthew G Knepley case ADD_VALUES: 30717128ae9fSMatthew G Knepley case ADD_ALL_VALUES: 3072d71ae5a4SJacob Faibussowitsch case ADD_BC_VALUES: 3073d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3074d71ae5a4SJacob Faibussowitsch break; 3075d71ae5a4SJacob Faibussowitsch default: 3076d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 30777128ae9fSMatthew G Knepley } 3078ca3d3a14SMatthew G. Knepley if ((sf && !isInsert) || (s && isInsert)) { 30799566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3080ca3d3a14SMatthew G. Knepley if (transform) { 30819566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 30829566063dSJacob Faibussowitsch PetscCall(VecCopy(l, tmpl)); 30839566063dSJacob Faibussowitsch PetscCall(DMPlexLocalToGlobalBasis(dm, tmpl)); 30849566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3085fa88e482SJed Brown } else if (isInsert) { 30869566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l, &lArray)); 3087fa88e482SJed Brown } else { 30889566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, &lmtype)); 3089fa88e482SJed Brown l_inplace = PETSC_TRUE; 3090ca3d3a14SMatthew G. Knepley } 3091fa88e482SJed Brown if (s && isInsert) { 30929566063dSJacob Faibussowitsch PetscCall(VecGetArray(g, &gArray)); 3093fa88e482SJed Brown } else { 30949566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, &gmtype)); 3095fa88e482SJed Brown g_inplace = PETSC_TRUE; 3096fa88e482SJed Brown } 3097ca3d3a14SMatthew G. Knepley if (sf && !isInsert) { 30989566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(sf, MPIU_SCALAR, lmtype, lArray, gmtype, gArray, MPIU_SUM)); 309984330215SMatthew G. Knepley } else if (s && isInsert) { 310084330215SMatthew G. Knepley PetscInt gStart, pStart, pEnd, p; 310184330215SMatthew G. Knepley 31029566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gs)); 31039566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 31049566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(g, &gStart, NULL)); 310584330215SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 3106b3b16f48SMatthew G. Knepley PetscInt dof, gdof, cdof, gcdof, off, goff, d, e; 310784330215SMatthew G. Knepley 31089566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s, p, &dof)); 31099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(gs, p, &gdof)); 31109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s, p, &cdof)); 31119566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(gs, p, &gcdof)); 31129566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(s, p, &off)); 31139566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(gs, p, &goff)); 3114b3b16f48SMatthew G. Knepley /* Ignore off-process data and points with no global data */ 311503442857SMatthew G. Knepley if (!gdof || goff < 0) continue; 31167a8be351SBarry Smith PetscCheck(dof == gdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 3117b3b16f48SMatthew G. Knepley /* If no constraints are enforced in the global vector */ 3118b3b16f48SMatthew G. Knepley if (!gcdof) { 311984330215SMatthew G. Knepley for (d = 0; d < dof; ++d) gArray[goff - gStart + d] = lArray[off + d]; 3120b3b16f48SMatthew G. Knepley /* If constraints are enforced in the global vector */ 3121b3b16f48SMatthew G. Knepley } else if (cdof == gcdof) { 312284330215SMatthew G. Knepley const PetscInt *cdofs; 312384330215SMatthew G. Knepley PetscInt cind = 0; 312484330215SMatthew G. Knepley 31259566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(s, p, &cdofs)); 3126b3b16f48SMatthew G. Knepley for (d = 0, e = 0; d < dof; ++d) { 31279371c9d4SSatish Balay if ((cind < cdof) && (d == cdofs[cind])) { 31289371c9d4SSatish Balay ++cind; 31299371c9d4SSatish Balay continue; 31309371c9d4SSatish Balay } 3131b3b16f48SMatthew G. Knepley gArray[goff - gStart + e++] = lArray[off + d]; 313284330215SMatthew G. Knepley } 31337a8be351SBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 313484330215SMatthew G. Knepley } 3135ca3d3a14SMatthew G. Knepley } 3136fa88e482SJed Brown if (g_inplace) { 31379566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 3138fa88e482SJed Brown } else { 31399566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(g, &gArray)); 3140fa88e482SJed Brown } 3141ca3d3a14SMatthew G. Knepley if (transform) { 31429566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 31439566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3144fa88e482SJed Brown } else if (l_inplace) { 31459566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3146ca3d3a14SMatthew G. Knepley } else { 31479566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l, &lArray)); 3148ca3d3a14SMatthew G. Knepley } 31497128ae9fSMatthew G Knepley } else { 3150fa1e479aSStefano Zampini PetscUseTypeMethod(dm, localtoglobalbegin, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g); 31517128ae9fSMatthew G Knepley } 31523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31539a42bb27SBarry Smith } 31549a42bb27SBarry Smith 31559a42bb27SBarry Smith /*@ 31569a42bb27SBarry Smith DMLocalToGlobalEnd - updates global vectors from local vectors 315747c6ae99SBarry Smith 315820f4b53cSBarry Smith Neighbor-wise Collective 315947c6ae99SBarry Smith 316047c6ae99SBarry Smith Input Parameters: 3161bb7acecfSBarry Smith + dm - the `DM` object 3162f6813fd5SJed Brown . l - the local vector 3163bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 3164f6813fd5SJed Brown - g - the global vector 316547c6ae99SBarry Smith 316601729b5cSPatrick Sanan Level: intermediate 316747c6ae99SBarry Smith 3168bb7acecfSBarry Smith Note: 3169bb7acecfSBarry Smith See `DMLocalToGlobalBegin()` for full details 3170bb7acecfSBarry Smith 317160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()` 317247c6ae99SBarry Smith @*/ 3173d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalEnd(DM dm, Vec l, InsertMode mode, Vec g) 3174d71ae5a4SJacob Faibussowitsch { 31757128ae9fSMatthew G Knepley PetscSF sf; 317684330215SMatthew G. Knepley PetscSection s; 3177d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3178ca3d3a14SMatthew G. Knepley PetscBool isInsert, transform; 317947c6ae99SBarry Smith 318047c6ae99SBarry Smith PetscFunctionBegin; 3181171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 31829566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 31839566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 31847128ae9fSMatthew G Knepley switch (mode) { 31857128ae9fSMatthew G Knepley case INSERT_VALUES: 3186d71ae5a4SJacob Faibussowitsch case INSERT_ALL_VALUES: 3187d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3188d71ae5a4SJacob Faibussowitsch break; 31897128ae9fSMatthew G Knepley case ADD_VALUES: 3190d71ae5a4SJacob Faibussowitsch case ADD_ALL_VALUES: 3191d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3192d71ae5a4SJacob Faibussowitsch break; 3193d71ae5a4SJacob Faibussowitsch default: 3194d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 31957128ae9fSMatthew G Knepley } 319684330215SMatthew G. Knepley if (sf && !isInsert) { 3197ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3198ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3199ca3d3a14SMatthew G. Knepley Vec tmpl; 320084330215SMatthew G. Knepley 32019566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3202ca3d3a14SMatthew G. Knepley if (transform) { 32039566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 32049566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3205ca3d3a14SMatthew G. Knepley } else { 32069566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, NULL)); 3207ca3d3a14SMatthew G. Knepley } 32089566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, NULL)); 32099566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_SCALAR, lArray, gArray, MPIU_SUM)); 3210ca3d3a14SMatthew G. Knepley if (transform) { 32119566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 32129566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3213ca3d3a14SMatthew G. Knepley } else { 32149566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3215ca3d3a14SMatthew G. Knepley } 32169566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 321784330215SMatthew G. Knepley } else if (s && isInsert) { 32187128ae9fSMatthew G Knepley } else { 3219fa1e479aSStefano Zampini PetscUseTypeMethod(dm, localtoglobalend, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g); 32207128ae9fSMatthew G Knepley } 3221d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 32229566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 3223d4d07f1eSToby Isaac } 32243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 322547c6ae99SBarry Smith } 322647c6ae99SBarry Smith 3227f089877aSRichard Tran Mills /*@ 3228a4e35b19SJacob Faibussowitsch DMLocalToLocalBegin - Begins the process of mapping values from a local vector (that include 3229a4e35b19SJacob Faibussowitsch ghost points that contain irrelevant values) to another local vector where the ghost points 3230a4e35b19SJacob Faibussowitsch in the second are set correctly from values on other MPI ranks. 3231f089877aSRichard Tran Mills 323220f4b53cSBarry Smith Neighbor-wise Collective 3233f089877aSRichard Tran Mills 3234f089877aSRichard Tran Mills Input Parameters: 3235bb7acecfSBarry Smith + dm - the `DM` object 3236bc0a1609SRichard Tran Mills . g - the original local vector 3237bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3238f089877aSRichard Tran Mills 3239bc0a1609SRichard Tran Mills Output Parameter: 3240bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3241f089877aSRichard Tran Mills 3242f089877aSRichard Tran Mills Level: intermediate 3243f089877aSRichard Tran Mills 324473ff1848SBarry Smith Note: 3245a4e35b19SJacob Faibussowitsch Must be followed by `DMLocalToLocalEnd()`. 3246a4e35b19SJacob Faibussowitsch 324760225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3248f089877aSRichard Tran Mills @*/ 3249d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 3250d71ae5a4SJacob Faibussowitsch { 3251f089877aSRichard Tran Mills PetscFunctionBegin; 3252f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32539f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 32549f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 32559f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 32563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3257f089877aSRichard Tran Mills } 3258f089877aSRichard Tran Mills 3259f089877aSRichard Tran Mills /*@ 3260bb7acecfSBarry Smith DMLocalToLocalEnd - Maps from a local vector to another local vector where the ghost 3261bb7acecfSBarry Smith points in the second are set correctly. Must be preceded by `DMLocalToLocalBegin()`. 3262f089877aSRichard Tran Mills 326320f4b53cSBarry Smith Neighbor-wise Collective 3264f089877aSRichard Tran Mills 3265f089877aSRichard Tran Mills Input Parameters: 326660225df5SJacob Faibussowitsch + dm - the `DM` object 3267bc0a1609SRichard Tran Mills . g - the original local vector 3268bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3269f089877aSRichard Tran Mills 3270bc0a1609SRichard Tran Mills Output Parameter: 3271bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3272f089877aSRichard Tran Mills 3273f089877aSRichard Tran Mills Level: intermediate 3274f089877aSRichard Tran Mills 327560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3276f089877aSRichard Tran Mills @*/ 3277d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 3278d71ae5a4SJacob Faibussowitsch { 3279f089877aSRichard Tran Mills PetscFunctionBegin; 3280f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32819f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 32829f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 32839f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 32843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3285f089877aSRichard Tran Mills } 3286f089877aSRichard Tran Mills 328747c6ae99SBarry Smith /*@ 3288bb7acecfSBarry Smith DMCoarsen - Coarsens a `DM` object using a standard, non-adaptive coarsening of the underlying mesh 328947c6ae99SBarry Smith 329020f4b53cSBarry Smith Collective 329147c6ae99SBarry Smith 3292d8d19677SJose E. Roman Input Parameters: 3293bb7acecfSBarry Smith + dm - the `DM` object 329420f4b53cSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`) 329547c6ae99SBarry Smith 329647c6ae99SBarry Smith Output Parameter: 3297bb7acecfSBarry Smith . dmc - the coarsened `DM` 329847c6ae99SBarry Smith 329947c6ae99SBarry Smith Level: developer 330047c6ae99SBarry Smith 330173ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`, 330273ff1848SBarry Smith `DMCoarsenHookAdd()`, `DMCoarsenHookRemove()` 330347c6ae99SBarry Smith @*/ 3304d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsen(DM dm, MPI_Comm comm, DM *dmc) 3305d71ae5a4SJacob Faibussowitsch { 3306b17ce1afSJed Brown DMCoarsenHookLink link; 330747c6ae99SBarry Smith 330847c6ae99SBarry Smith PetscFunctionBegin; 3309171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 33109566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Coarsen, dm, 0, 0, 0)); 3311dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, coarsen, comm, dmc); 3312b9d85ea2SLisandro Dalcin if (*dmc) { 3313a3574896SRichard Tran Mills (*dmc)->bind_below = dm->bind_below; /* Propagate this from parent DM; otherwise -dm_bind_below will be useless for multigrid cases. */ 33149566063dSJacob Faibussowitsch PetscCall(DMSetCoarseDM(dm, *dmc)); 331543842a1eSJed Brown (*dmc)->ops->creatematrix = dm->ops->creatematrix; 33169566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmc)); 3317644e2e5bSBarry Smith (*dmc)->ctx = dm->ctx; 33180598a293SJed Brown (*dmc)->levelup = dm->levelup; 3319656b349aSBarry Smith (*dmc)->leveldown = dm->leveldown + 1; 33209566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmc, dm->mattype)); 3321b17ce1afSJed Brown for (link = dm->coarsenhook; link; link = link->next) { 33229566063dSJacob Faibussowitsch if (link->coarsenhook) PetscCall((*link->coarsenhook)(dm, *dmc, link->ctx)); 3323b17ce1afSJed Brown } 3324b9d85ea2SLisandro Dalcin } 33259566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Coarsen, dm, 0, 0, 0)); 33267a8be351SBarry Smith PetscCheck(*dmc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "NULL coarse mesh produced"); 33273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3328b17ce1afSJed Brown } 3329b17ce1afSJed Brown 3330bb9467b5SJed Brown /*@C 3331b17ce1afSJed Brown DMCoarsenHookAdd - adds a callback to be run when restricting a nonlinear problem to the coarse grid 3332b17ce1afSJed Brown 333320f4b53cSBarry Smith Logically Collective; No Fortran Support 3334b17ce1afSJed Brown 33354165533cSJose E. Roman Input Parameters: 3336bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3337b17ce1afSJed Brown . coarsenhook - function to run when setting up a coarser level 3338bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels (called once per `SNESSolve()`) 333920f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3340b17ce1afSJed Brown 334120f4b53cSBarry Smith Calling sequence of `coarsenhook`: 3342bb7acecfSBarry Smith + fine - fine level `DM` 3343bb7acecfSBarry Smith . coarse - coarse level `DM` to restrict problem to 3344b17ce1afSJed Brown - ctx - optional user-defined function context 3345b17ce1afSJed Brown 334620f4b53cSBarry Smith Calling sequence of `restricthook`: 3347bb7acecfSBarry Smith + fine - fine level `DM` 3348bb7acecfSBarry Smith . mrestrict - matrix restricting a fine-level solution to the coarse grid, usually the transpose of the interpolation 3349c833c3b5SJed Brown . rscale - scaling vector for restriction 3350c833c3b5SJed Brown . inject - matrix restricting by injection 3351b17ce1afSJed Brown . coarse - coarse level DM to update 3352b17ce1afSJed Brown - ctx - optional user-defined function context 3353b17ce1afSJed Brown 3354b17ce1afSJed Brown Level: advanced 3355b17ce1afSJed Brown 3356b17ce1afSJed Brown Notes: 3357bb7acecfSBarry Smith This function is only needed if auxiliary data, attached to the `DM` with `PetscObjectCompose()`, needs to be set up or passed from the fine `DM` to the coarse `DM`. 3358b17ce1afSJed Brown 3359b17ce1afSJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 3360b17ce1afSJed Brown 3361b17ce1afSJed Brown In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3362bb7acecfSBarry Smith extract the finest level information from its context (instead of from the `SNES`). 3363b17ce1afSJed Brown 3364bb7acecfSBarry Smith The hooks are automatically called by `DMRestrict()` 3365bb7acecfSBarry Smith 33661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3367b17ce1afSJed Brown @*/ 3368a4e35b19SJacob Faibussowitsch PetscErrorCode DMCoarsenHookAdd(DM fine, PetscErrorCode (*coarsenhook)(DM fine, DM coarse, void *ctx), PetscErrorCode (*restricthook)(DM fine, Mat mrestrict, Vec rscale, Mat inject, DM coarse, void *ctx), void *ctx) 3369d71ae5a4SJacob Faibussowitsch { 3370b17ce1afSJed Brown DMCoarsenHookLink link, *p; 3371b17ce1afSJed Brown 3372b17ce1afSJed Brown PetscFunctionBegin; 3373b17ce1afSJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 33741e3d8eccSJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 33753ba16761SJacob Faibussowitsch if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 33761e3d8eccSJed Brown } 33779566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 3378b17ce1afSJed Brown link->coarsenhook = coarsenhook; 3379b17ce1afSJed Brown link->restricthook = restricthook; 3380b17ce1afSJed Brown link->ctx = ctx; 33810298fd71SBarry Smith link->next = NULL; 3382b17ce1afSJed Brown *p = link; 33833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3384b17ce1afSJed Brown } 3385b17ce1afSJed Brown 3386dc822a44SJed Brown /*@C 3387bb7acecfSBarry Smith DMCoarsenHookRemove - remove a callback set with `DMCoarsenHookAdd()` 3388dc822a44SJed Brown 338920f4b53cSBarry Smith Logically Collective; No Fortran Support 3390dc822a44SJed Brown 33914165533cSJose E. Roman Input Parameters: 3392bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3393dc822a44SJed Brown . coarsenhook - function to run when setting up a coarser level 3394bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels 339520f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3396dc822a44SJed Brown 3397dc822a44SJed Brown Level: advanced 3398dc822a44SJed Brown 339973ff1848SBarry Smith Notes: 340073ff1848SBarry Smith This function does nothing if the `coarsenhook` is not in the list. 340173ff1848SBarry Smith 340273ff1848SBarry Smith See `DMCoarsenHookAdd()` for the calling sequence of `coarsenhook` and `restricthook` 3403dc822a44SJed Brown 34041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3405dc822a44SJed Brown @*/ 3406d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookRemove(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx) 3407d71ae5a4SJacob Faibussowitsch { 3408dc822a44SJed Brown DMCoarsenHookLink link, *p; 3409dc822a44SJed Brown 3410dc822a44SJed Brown PetscFunctionBegin; 3411dc822a44SJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 3412dc822a44SJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3413dc822a44SJed Brown if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3414dc822a44SJed Brown link = *p; 3415dc822a44SJed Brown *p = link->next; 34169566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3417dc822a44SJed Brown break; 3418dc822a44SJed Brown } 3419dc822a44SJed Brown } 34203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3421dc822a44SJed Brown } 3422dc822a44SJed Brown 3423b17ce1afSJed Brown /*@ 3424bb7acecfSBarry Smith DMRestrict - restricts user-defined problem data to a coarser `DM` by running hooks registered by `DMCoarsenHookAdd()` 3425b17ce1afSJed Brown 3426b17ce1afSJed Brown Collective if any hooks are 3427b17ce1afSJed Brown 34284165533cSJose E. Roman Input Parameters: 3429bb7acecfSBarry Smith + fine - finer `DM` from which the data is obtained 3430bb7acecfSBarry Smith . restrct - restriction matrix, apply using `MatRestrict()`, usually the transpose of the interpolation 3431e91eccc2SStefano Zampini . rscale - scaling vector for restriction 3432bb7acecfSBarry Smith . inject - injection matrix, also use `MatRestrict()` 343320f4b53cSBarry Smith - coarse - coarser `DM` to update 3434b17ce1afSJed Brown 3435b17ce1afSJed Brown Level: developer 3436b17ce1afSJed Brown 343773ff1848SBarry Smith Developer Note: 3438bb7acecfSBarry Smith Though this routine is called `DMRestrict()` the hooks are added with `DMCoarsenHookAdd()`, a consistent terminology would be better 3439bb7acecfSBarry Smith 34401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMInterpolate()`, `DMRefineHookAdd()` 3441b17ce1afSJed Brown @*/ 3442d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestrict(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse) 3443d71ae5a4SJacob Faibussowitsch { 3444b17ce1afSJed Brown DMCoarsenHookLink link; 3445b17ce1afSJed Brown 3446b17ce1afSJed Brown PetscFunctionBegin; 3447b17ce1afSJed Brown for (link = fine->coarsenhook; link; link = link->next) { 34481baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(fine, restrct, rscale, inject, coarse, link->ctx)); 3449b17ce1afSJed Brown } 34503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 345147c6ae99SBarry Smith } 345247c6ae99SBarry Smith 3453bb9467b5SJed Brown /*@C 345473ff1848SBarry Smith DMSubDomainHookAdd - adds a callback to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()` 34555dbd56e3SPeter Brune 345620f4b53cSBarry Smith Logically Collective; No Fortran Support 34575dbd56e3SPeter Brune 34584165533cSJose E. Roman Input Parameters: 3459bb7acecfSBarry Smith + global - global `DM` 3460bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 34615dbd56e3SPeter Brune . restricthook - function to run to update data on block solve (at the beginning of the block solve) 346220f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 34635dbd56e3SPeter Brune 346420f4b53cSBarry Smith Calling sequence of `ddhook`: 3465bb7acecfSBarry Smith + global - global `DM` 346673ff1848SBarry Smith . block - subdomain `DM` 3467ec4806b8SPeter Brune - ctx - optional user-defined function context 3468ec4806b8SPeter Brune 346920f4b53cSBarry Smith Calling sequence of `restricthook`: 3470bb7acecfSBarry Smith + global - global `DM` 347173ff1848SBarry Smith . out - scatter to the outer (with ghost and overlap points) sub vector 347273ff1848SBarry Smith . in - scatter to sub vector values only owned locally 347373ff1848SBarry Smith . block - subdomain `DM` 34745dbd56e3SPeter Brune - ctx - optional user-defined function context 34755dbd56e3SPeter Brune 34765dbd56e3SPeter Brune Level: advanced 34775dbd56e3SPeter Brune 34785dbd56e3SPeter Brune Notes: 347973ff1848SBarry Smith This function can be used if auxiliary data needs to be set up on subdomain `DM`s. 34805dbd56e3SPeter Brune 34815dbd56e3SPeter Brune If this function is called multiple times, the hooks will be run in the order they are added. 34825dbd56e3SPeter Brune 34835dbd56e3SPeter Brune In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3484bb7acecfSBarry Smith extract the global information from its context (instead of from the `SNES`). 34855dbd56e3SPeter Brune 348673ff1848SBarry Smith Developer Note: 348773ff1848SBarry Smith It is unclear what "block solve" means within the definition of `restricthook` 348873ff1848SBarry Smith 348973ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`, `DMCreateDomainDecomposition()` 34905dbd56e3SPeter Brune @*/ 3491a4e35b19SJacob Faibussowitsch PetscErrorCode DMSubDomainHookAdd(DM global, PetscErrorCode (*ddhook)(DM global, DM block, void *ctx), PetscErrorCode (*restricthook)(DM global, VecScatter out, VecScatter in, DM block, void *ctx), void *ctx) 3492d71ae5a4SJacob Faibussowitsch { 3493be081cd6SPeter Brune DMSubDomainHookLink link, *p; 34945dbd56e3SPeter Brune 34955dbd56e3SPeter Brune PetscFunctionBegin; 34965dbd56e3SPeter Brune PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3497b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 34983ba16761SJacob Faibussowitsch if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 3499b3a6b972SJed Brown } 35009566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 35015dbd56e3SPeter Brune link->restricthook = restricthook; 3502be081cd6SPeter Brune link->ddhook = ddhook; 35035dbd56e3SPeter Brune link->ctx = ctx; 35040298fd71SBarry Smith link->next = NULL; 35055dbd56e3SPeter Brune *p = link; 35063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35075dbd56e3SPeter Brune } 35085dbd56e3SPeter Brune 3509b3a6b972SJed Brown /*@C 351073ff1848SBarry Smith DMSubDomainHookRemove - remove a callback from the list to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()` 3511b3a6b972SJed Brown 351220f4b53cSBarry Smith Logically Collective; No Fortran Support 3513b3a6b972SJed Brown 35144165533cSJose E. Roman Input Parameters: 3515bb7acecfSBarry Smith + global - global `DM` 3516bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 3517b3a6b972SJed Brown . restricthook - function to run to update data on block solve (at the beginning of the block solve) 351820f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3519b3a6b972SJed Brown 3520b3a6b972SJed Brown Level: advanced 3521b3a6b972SJed Brown 352273ff1848SBarry Smith Note: 352373ff1848SBarry Smith See `DMSubDomainHookAdd()` for the calling sequences of `ddhook` and `restricthook` 352473ff1848SBarry Smith 352573ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`, 352673ff1848SBarry Smith `DMCreateDomainDecomposition()` 3527b3a6b972SJed Brown @*/ 3528d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookRemove(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx) 3529d71ae5a4SJacob Faibussowitsch { 3530b3a6b972SJed Brown DMSubDomainHookLink link, *p; 3531b3a6b972SJed Brown 3532b3a6b972SJed Brown PetscFunctionBegin; 3533b3a6b972SJed Brown PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3534b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3535b3a6b972SJed Brown if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3536b3a6b972SJed Brown link = *p; 3537b3a6b972SJed Brown *p = link->next; 35389566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3539b3a6b972SJed Brown break; 3540b3a6b972SJed Brown } 3541b3a6b972SJed Brown } 35423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3543b3a6b972SJed Brown } 3544b3a6b972SJed Brown 35455dbd56e3SPeter Brune /*@ 354673ff1848SBarry Smith DMSubDomainRestrict - restricts user-defined problem data to a subdomain `DM` by running hooks registered by `DMSubDomainHookAdd()` 35475dbd56e3SPeter Brune 35485dbd56e3SPeter Brune Collective if any hooks are 35495dbd56e3SPeter Brune 35504165533cSJose E. Roman Input Parameters: 3551a4e35b19SJacob Faibussowitsch + global - The global `DM` to use as a base 3552a4e35b19SJacob Faibussowitsch . oscatter - The scatter from domain global vector filling subdomain global vector with overlap 3553a4e35b19SJacob Faibussowitsch . gscatter - The scatter from domain global vector filling subdomain local vector with ghosts 3554a4e35b19SJacob Faibussowitsch - subdm - The subdomain `DM` to update 35555dbd56e3SPeter Brune 35565dbd56e3SPeter Brune Level: developer 35575dbd56e3SPeter Brune 355873ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMCreateDomainDecomposition()` 35595dbd56e3SPeter Brune @*/ 3560d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainRestrict(DM global, VecScatter oscatter, VecScatter gscatter, DM subdm) 3561d71ae5a4SJacob Faibussowitsch { 3562be081cd6SPeter Brune DMSubDomainHookLink link; 35635dbd56e3SPeter Brune 35645dbd56e3SPeter Brune PetscFunctionBegin; 3565be081cd6SPeter Brune for (link = global->subdomainhook; link; link = link->next) { 35661baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(global, oscatter, gscatter, subdm, link->ctx)); 35675dbd56e3SPeter Brune } 35683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35695dbd56e3SPeter Brune } 35705dbd56e3SPeter Brune 35715fe1f584SPeter Brune /*@ 3572bb7acecfSBarry Smith DMGetCoarsenLevel - Gets the number of coarsenings that have generated this `DM`. 35735fe1f584SPeter Brune 35745fe1f584SPeter Brune Not Collective 35755fe1f584SPeter Brune 35765fe1f584SPeter Brune Input Parameter: 3577bb7acecfSBarry Smith . dm - the `DM` object 35785fe1f584SPeter Brune 35795fe1f584SPeter Brune Output Parameter: 35806a7d9d85SPeter Brune . level - number of coarsenings 35815fe1f584SPeter Brune 35825fe1f584SPeter Brune Level: developer 35835fe1f584SPeter Brune 35841cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMSetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 35855fe1f584SPeter Brune @*/ 3586d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarsenLevel(DM dm, PetscInt *level) 3587d71ae5a4SJacob Faibussowitsch { 35885fe1f584SPeter Brune PetscFunctionBegin; 35895fe1f584SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 35904f572ea9SToby Isaac PetscAssertPointer(level, 2); 35915fe1f584SPeter Brune *level = dm->leveldown; 35923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35935fe1f584SPeter Brune } 35945fe1f584SPeter Brune 35959a64c4a8SMatthew G. Knepley /*@ 3596bb7acecfSBarry Smith DMSetCoarsenLevel - Sets the number of coarsenings that have generated this `DM`. 35979a64c4a8SMatthew G. Knepley 359820f4b53cSBarry Smith Collective 35999a64c4a8SMatthew G. Knepley 36009a64c4a8SMatthew G. Knepley Input Parameters: 3601bb7acecfSBarry Smith + dm - the `DM` object 36029a64c4a8SMatthew G. Knepley - level - number of coarsenings 36039a64c4a8SMatthew G. Knepley 36049a64c4a8SMatthew G. Knepley Level: developer 36059a64c4a8SMatthew G. Knepley 3606bb7acecfSBarry Smith Note: 3607bb7acecfSBarry Smith This is rarely used directly, the information is automatically set when a `DM` is created with `DMCoarsen()` 3608bb7acecfSBarry Smith 360942747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 36109a64c4a8SMatthew G. Knepley @*/ 3611d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarsenLevel(DM dm, PetscInt level) 3612d71ae5a4SJacob Faibussowitsch { 36139a64c4a8SMatthew G. Knepley PetscFunctionBegin; 36149a64c4a8SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36159a64c4a8SMatthew G. Knepley dm->leveldown = level; 36163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36179a64c4a8SMatthew G. Knepley } 36189a64c4a8SMatthew G. Knepley 361947c6ae99SBarry Smith /*@C 3620bb7acecfSBarry Smith DMRefineHierarchy - Refines a `DM` object, all levels at once 362147c6ae99SBarry Smith 362220f4b53cSBarry Smith Collective 362347c6ae99SBarry Smith 3624d8d19677SJose E. Roman Input Parameters: 3625bb7acecfSBarry Smith + dm - the `DM` object 362647c6ae99SBarry Smith - nlevels - the number of levels of refinement 362747c6ae99SBarry Smith 362847c6ae99SBarry Smith Output Parameter: 3629bb7acecfSBarry Smith . dmf - the refined `DM` hierarchy 363047c6ae99SBarry Smith 363147c6ae99SBarry Smith Level: developer 363247c6ae99SBarry Smith 36331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMCoarsenHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 363447c6ae99SBarry Smith @*/ 3635d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHierarchy(DM dm, PetscInt nlevels, DM dmf[]) 3636d71ae5a4SJacob Faibussowitsch { 363747c6ae99SBarry Smith PetscFunctionBegin; 3638171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36397a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 36403ba16761SJacob Faibussowitsch if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS); 36414f572ea9SToby Isaac PetscAssertPointer(dmf, 3); 3642213acdd3SPierre Jolivet if (dm->ops->refine && !dm->ops->refinehierarchy) { 364347c6ae99SBarry Smith PetscInt i; 364447c6ae99SBarry Smith 36459566063dSJacob Faibussowitsch PetscCall(DMRefine(dm, PetscObjectComm((PetscObject)dm), &dmf[0])); 364648a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMRefine(dmf[i - 1], PetscObjectComm((PetscObject)dm), &dmf[i])); 3647213acdd3SPierre Jolivet } else PetscUseTypeMethod(dm, refinehierarchy, nlevels, dmf); 36483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 364947c6ae99SBarry Smith } 365047c6ae99SBarry Smith 365147c6ae99SBarry Smith /*@C 3652bb7acecfSBarry Smith DMCoarsenHierarchy - Coarsens a `DM` object, all levels at once 365347c6ae99SBarry Smith 365420f4b53cSBarry Smith Collective 365547c6ae99SBarry Smith 3656d8d19677SJose E. Roman Input Parameters: 3657bb7acecfSBarry Smith + dm - the `DM` object 365847c6ae99SBarry Smith - nlevels - the number of levels of coarsening 365947c6ae99SBarry Smith 366047c6ae99SBarry Smith Output Parameter: 3661bb7acecfSBarry Smith . dmc - the coarsened `DM` hierarchy 366247c6ae99SBarry Smith 366347c6ae99SBarry Smith Level: developer 366447c6ae99SBarry Smith 36651cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMRefineHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 366647c6ae99SBarry Smith @*/ 3667d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHierarchy(DM dm, PetscInt nlevels, DM dmc[]) 3668d71ae5a4SJacob Faibussowitsch { 366947c6ae99SBarry Smith PetscFunctionBegin; 3670171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36717a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 36723ba16761SJacob Faibussowitsch if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS); 36734f572ea9SToby Isaac PetscAssertPointer(dmc, 3); 3674213acdd3SPierre Jolivet if (dm->ops->coarsen && !dm->ops->coarsenhierarchy) { 367547c6ae99SBarry Smith PetscInt i; 367647c6ae99SBarry Smith 36779566063dSJacob Faibussowitsch PetscCall(DMCoarsen(dm, PetscObjectComm((PetscObject)dm), &dmc[0])); 367848a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMCoarsen(dmc[i - 1], PetscObjectComm((PetscObject)dm), &dmc[i])); 3679213acdd3SPierre Jolivet } else PetscUseTypeMethod(dm, coarsenhierarchy, nlevels, dmc); 36803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 368147c6ae99SBarry Smith } 368247c6ae99SBarry Smith 36831a266240SBarry Smith /*@C 3684bb7acecfSBarry Smith DMSetApplicationContextDestroy - Sets a user function that will be called to destroy the application context when the `DM` is destroyed 36851a266240SBarry Smith 3686bb7acecfSBarry Smith Logically Collective if the function is collective 36871a266240SBarry Smith 36881a266240SBarry Smith Input Parameters: 3689bb7acecfSBarry Smith + dm - the `DM` object 36901a266240SBarry Smith - destroy - the destroy function 36911a266240SBarry Smith 36921a266240SBarry Smith Level: intermediate 36931a266240SBarry Smith 36941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 3695f07f9ceaSJed Brown @*/ 3696d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContextDestroy(DM dm, PetscErrorCode (*destroy)(void **)) 3697d71ae5a4SJacob Faibussowitsch { 36981a266240SBarry Smith PetscFunctionBegin; 3699171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37001a266240SBarry Smith dm->ctxdestroy = destroy; 37013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 37021a266240SBarry Smith } 37031a266240SBarry Smith 3704b07ff414SBarry Smith /*@ 3705bb7acecfSBarry Smith DMSetApplicationContext - Set a user context into a `DM` object 370647c6ae99SBarry Smith 370747c6ae99SBarry Smith Not Collective 370847c6ae99SBarry Smith 370947c6ae99SBarry Smith Input Parameters: 3710bb7acecfSBarry Smith + dm - the `DM` object 371147c6ae99SBarry Smith - ctx - the user context 371247c6ae99SBarry Smith 371347c6ae99SBarry Smith Level: intermediate 371447c6ae99SBarry Smith 3715bb7acecfSBarry Smith Note: 371635cb6cd3SPierre Jolivet A user context is a way to pass problem specific information that is accessible whenever the `DM` is available 3717bb7acecfSBarry Smith 371860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 371947c6ae99SBarry Smith @*/ 3720d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContext(DM dm, void *ctx) 3721d71ae5a4SJacob Faibussowitsch { 372247c6ae99SBarry Smith PetscFunctionBegin; 3723171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 372447c6ae99SBarry Smith dm->ctx = ctx; 37253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 372647c6ae99SBarry Smith } 372747c6ae99SBarry Smith 372847c6ae99SBarry Smith /*@ 3729bb7acecfSBarry Smith DMGetApplicationContext - Gets a user context from a `DM` object 373047c6ae99SBarry Smith 373147c6ae99SBarry Smith Not Collective 373247c6ae99SBarry Smith 373347c6ae99SBarry Smith Input Parameter: 3734bb7acecfSBarry Smith . dm - the `DM` object 373547c6ae99SBarry Smith 373647c6ae99SBarry Smith Output Parameter: 373747c6ae99SBarry Smith . ctx - the user context 373847c6ae99SBarry Smith 373947c6ae99SBarry Smith Level: intermediate 374047c6ae99SBarry Smith 3741bb7acecfSBarry Smith Note: 374235cb6cd3SPierre Jolivet A user context is a way to pass problem specific information that is accessible whenever the `DM` is available 3743bb7acecfSBarry Smith 374442747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 374547c6ae99SBarry Smith @*/ 3746d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetApplicationContext(DM dm, void *ctx) 3747d71ae5a4SJacob Faibussowitsch { 374847c6ae99SBarry Smith PetscFunctionBegin; 3749171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37501b2093e4SBarry Smith *(void **)ctx = dm->ctx; 37513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 375247c6ae99SBarry Smith } 375347c6ae99SBarry Smith 375408da532bSDmitry Karpeev /*@C 3755bb7acecfSBarry Smith DMSetVariableBounds - sets a function to compute the lower and upper bound vectors for `SNESVI`. 375608da532bSDmitry Karpeev 375720f4b53cSBarry Smith Logically Collective 375808da532bSDmitry Karpeev 3759d8d19677SJose E. Roman Input Parameters: 376008da532bSDmitry Karpeev + dm - the DM object 376120f4b53cSBarry Smith - f - the function that computes variable bounds used by SNESVI (use `NULL` to cancel a previous function that was set) 376208da532bSDmitry Karpeev 376308da532bSDmitry Karpeev Level: intermediate 376408da532bSDmitry Karpeev 37651cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`, 3766db781477SPatrick Sanan `DMSetJacobian()` 376708da532bSDmitry Karpeev @*/ 3768d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVariableBounds(DM dm, PetscErrorCode (*f)(DM, Vec, Vec)) 3769d71ae5a4SJacob Faibussowitsch { 377008da532bSDmitry Karpeev PetscFunctionBegin; 37715a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 377208da532bSDmitry Karpeev dm->ops->computevariablebounds = f; 37733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 377408da532bSDmitry Karpeev } 377508da532bSDmitry Karpeev 377608da532bSDmitry Karpeev /*@ 3777bb7acecfSBarry Smith DMHasVariableBounds - does the `DM` object have a variable bounds function? 377808da532bSDmitry Karpeev 377908da532bSDmitry Karpeev Not Collective 378008da532bSDmitry Karpeev 378108da532bSDmitry Karpeev Input Parameter: 3782bb7acecfSBarry Smith . dm - the `DM` object to destroy 378308da532bSDmitry Karpeev 378408da532bSDmitry Karpeev Output Parameter: 3785bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the variable bounds function exists 378608da532bSDmitry Karpeev 378708da532bSDmitry Karpeev Level: developer 378808da532bSDmitry Karpeev 37891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 379008da532bSDmitry Karpeev @*/ 3791d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasVariableBounds(DM dm, PetscBool *flg) 3792d71ae5a4SJacob Faibussowitsch { 379308da532bSDmitry Karpeev PetscFunctionBegin; 37945a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37954f572ea9SToby Isaac PetscAssertPointer(flg, 2); 379608da532bSDmitry Karpeev *flg = (dm->ops->computevariablebounds) ? PETSC_TRUE : PETSC_FALSE; 37973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 379808da532bSDmitry Karpeev } 379908da532bSDmitry Karpeev 380008da532bSDmitry Karpeev /*@C 3801bb7acecfSBarry Smith DMComputeVariableBounds - compute variable bounds used by `SNESVI`. 380208da532bSDmitry Karpeev 380320f4b53cSBarry Smith Logically Collective 380408da532bSDmitry Karpeev 3805f899ff85SJose E. Roman Input Parameter: 3806bb7acecfSBarry Smith . dm - the `DM` object 380708da532bSDmitry Karpeev 380860225df5SJacob Faibussowitsch Output Parameters: 380908da532bSDmitry Karpeev + xl - lower bound 381008da532bSDmitry Karpeev - xu - upper bound 381108da532bSDmitry Karpeev 3812907376e6SBarry Smith Level: advanced 3813907376e6SBarry Smith 381420f4b53cSBarry Smith Note: 381595452b02SPatrick Sanan This is generally not called by users. It calls the function provided by the user with DMSetVariableBounds() 381608da532bSDmitry Karpeev 38171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 381808da532bSDmitry Karpeev @*/ 3819d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeVariableBounds(DM dm, Vec xl, Vec xu) 3820d71ae5a4SJacob Faibussowitsch { 382108da532bSDmitry Karpeev PetscFunctionBegin; 38225a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 382308da532bSDmitry Karpeev PetscValidHeaderSpecific(xl, VEC_CLASSID, 2); 38245a84ad33SLisandro Dalcin PetscValidHeaderSpecific(xu, VEC_CLASSID, 3); 3825dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, computevariablebounds, xl, xu); 38263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 382708da532bSDmitry Karpeev } 382808da532bSDmitry Karpeev 3829b0ae01b7SPeter Brune /*@ 3830bb7acecfSBarry Smith DMHasColoring - does the `DM` object have a method of providing a coloring? 3831b0ae01b7SPeter Brune 3832b0ae01b7SPeter Brune Not Collective 3833b0ae01b7SPeter Brune 3834b0ae01b7SPeter Brune Input Parameter: 3835b0ae01b7SPeter Brune . dm - the DM object 3836b0ae01b7SPeter Brune 3837b0ae01b7SPeter Brune Output Parameter: 3838bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateColoring()`. 3839b0ae01b7SPeter Brune 3840b0ae01b7SPeter Brune Level: developer 3841b0ae01b7SPeter Brune 38421cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateColoring()` 3843b0ae01b7SPeter Brune @*/ 3844d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasColoring(DM dm, PetscBool *flg) 3845d71ae5a4SJacob Faibussowitsch { 3846b0ae01b7SPeter Brune PetscFunctionBegin; 38475a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38484f572ea9SToby Isaac PetscAssertPointer(flg, 2); 3849b0ae01b7SPeter Brune *flg = (dm->ops->getcoloring) ? PETSC_TRUE : PETSC_FALSE; 38503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3851b0ae01b7SPeter Brune } 3852b0ae01b7SPeter Brune 38533ad4599aSBarry Smith /*@ 3854bb7acecfSBarry Smith DMHasCreateRestriction - does the `DM` object have a method of providing a restriction? 38553ad4599aSBarry Smith 38563ad4599aSBarry Smith Not Collective 38573ad4599aSBarry Smith 38583ad4599aSBarry Smith Input Parameter: 3859bb7acecfSBarry Smith . dm - the `DM` object 38603ad4599aSBarry Smith 38613ad4599aSBarry Smith Output Parameter: 3862bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateRestriction()`. 38633ad4599aSBarry Smith 38643ad4599aSBarry Smith Level: developer 38653ad4599aSBarry Smith 38661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateRestriction()`, `DMHasCreateInterpolation()`, `DMHasCreateInjection()` 38673ad4599aSBarry Smith @*/ 3868d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateRestriction(DM dm, PetscBool *flg) 3869d71ae5a4SJacob Faibussowitsch { 38703ad4599aSBarry Smith PetscFunctionBegin; 38715a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38724f572ea9SToby Isaac PetscAssertPointer(flg, 2); 38733ad4599aSBarry Smith *flg = (dm->ops->createrestriction) ? PETSC_TRUE : PETSC_FALSE; 38743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 38753ad4599aSBarry Smith } 38763ad4599aSBarry Smith 3877a7058e45SLawrence Mitchell /*@ 3878bb7acecfSBarry Smith DMHasCreateInjection - does the `DM` object have a method of providing an injection? 3879a7058e45SLawrence Mitchell 3880a7058e45SLawrence Mitchell Not Collective 3881a7058e45SLawrence Mitchell 3882a7058e45SLawrence Mitchell Input Parameter: 3883bb7acecfSBarry Smith . dm - the `DM` object 3884a7058e45SLawrence Mitchell 3885a7058e45SLawrence Mitchell Output Parameter: 3886bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateInjection()`. 3887a7058e45SLawrence Mitchell 3888a7058e45SLawrence Mitchell Level: developer 3889a7058e45SLawrence Mitchell 38901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateInjection()`, `DMHasCreateRestriction()`, `DMHasCreateInterpolation()` 3891a7058e45SLawrence Mitchell @*/ 3892d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateInjection(DM dm, PetscBool *flg) 3893d71ae5a4SJacob Faibussowitsch { 3894a7058e45SLawrence Mitchell PetscFunctionBegin; 38955a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38964f572ea9SToby Isaac PetscAssertPointer(flg, 2); 3897dbbe0bcdSBarry Smith if (dm->ops->hascreateinjection) PetscUseTypeMethod(dm, hascreateinjection, flg); 3898ad540459SPierre Jolivet else *flg = (dm->ops->createinjection) ? PETSC_TRUE : PETSC_FALSE; 38993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3900a7058e45SLawrence Mitchell } 3901a7058e45SLawrence Mitchell 39020298fd71SBarry Smith PetscFunctionList DMList = NULL; 3903264ace61SBarry Smith PetscBool DMRegisterAllCalled = PETSC_FALSE; 3904264ace61SBarry Smith 3905264ace61SBarry Smith /*@C 3906bb7acecfSBarry Smith DMSetType - Builds a `DM`, for a particular `DM` implementation. 3907264ace61SBarry Smith 390820f4b53cSBarry Smith Collective 3909264ace61SBarry Smith 3910264ace61SBarry Smith Input Parameters: 3911bb7acecfSBarry Smith + dm - The `DM` object 3912bb7acecfSBarry Smith - method - The name of the `DMType`, for example `DMDA`, `DMPLEX` 3913264ace61SBarry Smith 3914264ace61SBarry Smith Options Database Key: 3915bb7acecfSBarry Smith . -dm_type <type> - Sets the `DM` type; use -help for a list of available types 3916264ace61SBarry Smith 3917264ace61SBarry Smith Level: intermediate 3918264ace61SBarry Smith 3919bb7acecfSBarry Smith Note: 39200462cc06SPierre Jolivet Of the `DM` is constructed by directly calling a function to construct a particular `DM`, for example, `DMDACreate2d()` or `DMPlexCreateBoxMesh()` 3921bb7acecfSBarry Smith 39221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMGetType()`, `DMCreate()`, `DMDACreate2d()` 3923264ace61SBarry Smith @*/ 3924d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetType(DM dm, DMType method) 3925d71ae5a4SJacob Faibussowitsch { 3926264ace61SBarry Smith PetscErrorCode (*r)(DM); 3927264ace61SBarry Smith PetscBool match; 3928264ace61SBarry Smith 3929264ace61SBarry Smith PetscFunctionBegin; 3930264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39319566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, method, &match)); 39323ba16761SJacob Faibussowitsch if (match) PetscFunctionReturn(PETSC_SUCCESS); 3933264ace61SBarry Smith 39349566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 39359566063dSJacob Faibussowitsch PetscCall(PetscFunctionListFind(DMList, method, &r)); 39367a8be351SBarry Smith PetscCheck(r, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown DM type: %s", method); 3937264ace61SBarry Smith 3938dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, destroy); 39399566063dSJacob Faibussowitsch PetscCall(PetscMemzero(dm->ops, sizeof(*dm->ops))); 39409566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)dm, method)); 39419566063dSJacob Faibussowitsch PetscCall((*r)(dm)); 39423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3943264ace61SBarry Smith } 3944264ace61SBarry Smith 3945264ace61SBarry Smith /*@C 3946bb7acecfSBarry Smith DMGetType - Gets the `DM` type name (as a string) from the `DM`. 3947264ace61SBarry Smith 3948264ace61SBarry Smith Not Collective 3949264ace61SBarry Smith 3950264ace61SBarry Smith Input Parameter: 3951bb7acecfSBarry Smith . dm - The `DM` 3952264ace61SBarry Smith 3953264ace61SBarry Smith Output Parameter: 3954bb7acecfSBarry Smith . type - The `DMType` name 3955264ace61SBarry Smith 3956264ace61SBarry Smith Level: intermediate 3957264ace61SBarry Smith 39581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMSetType()`, `DMCreate()` 3959264ace61SBarry Smith @*/ 3960d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetType(DM dm, DMType *type) 3961d71ae5a4SJacob Faibussowitsch { 3962264ace61SBarry Smith PetscFunctionBegin; 3963264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39644f572ea9SToby Isaac PetscAssertPointer(type, 2); 39659566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 3966264ace61SBarry Smith *type = ((PetscObject)dm)->type_name; 39673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3968264ace61SBarry Smith } 3969264ace61SBarry Smith 397067a56275SMatthew G Knepley /*@C 3971bb7acecfSBarry Smith DMConvert - Converts a `DM` to another `DM`, either of the same or different type. 397267a56275SMatthew G Knepley 397320f4b53cSBarry Smith Collective 397467a56275SMatthew G Knepley 397567a56275SMatthew G Knepley Input Parameters: 3976bb7acecfSBarry Smith + dm - the `DM` 3977bb7acecfSBarry Smith - newtype - new `DM` type (use "same" for the same type) 397867a56275SMatthew G Knepley 397967a56275SMatthew G Knepley Output Parameter: 3980bb7acecfSBarry Smith . M - pointer to new `DM` 398167a56275SMatthew G Knepley 398220f4b53cSBarry Smith Level: intermediate 398320f4b53cSBarry Smith 398473ff1848SBarry Smith Note: 3985bb7acecfSBarry Smith Cannot be used to convert a sequential `DM` to a parallel or a parallel to sequential, 3986bb7acecfSBarry Smith the MPI communicator of the generated `DM` is always the same as the communicator 3987bb7acecfSBarry Smith of the input `DM`. 398867a56275SMatthew G Knepley 39891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMCreate()`, `DMClone()` 399067a56275SMatthew G Knepley @*/ 3991d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConvert(DM dm, DMType newtype, DM *M) 3992d71ae5a4SJacob Faibussowitsch { 399367a56275SMatthew G Knepley DM B; 399467a56275SMatthew G Knepley char convname[256]; 3995c067b6caSMatthew G. Knepley PetscBool sametype /*, issame */; 399667a56275SMatthew G Knepley 399767a56275SMatthew G Knepley PetscFunctionBegin; 399867a56275SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 399967a56275SMatthew G Knepley PetscValidType(dm, 1); 40004f572ea9SToby Isaac PetscAssertPointer(M, 3); 40019566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, newtype, &sametype)); 40029566063dSJacob Faibussowitsch /* PetscCall(PetscStrcmp(newtype, "same", &issame)); */ 4003c067b6caSMatthew G. Knepley if (sametype) { 4004c067b6caSMatthew G. Knepley *M = dm; 40059566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 40063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4007c067b6caSMatthew G. Knepley } else { 40080298fd71SBarry Smith PetscErrorCode (*conv)(DM, DMType, DM *) = NULL; 400967a56275SMatthew G Knepley 401067a56275SMatthew G Knepley /* 401167a56275SMatthew G Knepley Order of precedence: 401267a56275SMatthew G Knepley 1) See if a specialized converter is known to the current DM. 401367a56275SMatthew G Knepley 2) See if a specialized converter is known to the desired DM class. 401467a56275SMatthew G Knepley 3) See if a good general converter is registered for the desired class 401567a56275SMatthew G Knepley 4) See if a good general converter is known for the current matrix. 401667a56275SMatthew G Knepley 5) Use a really basic converter. 401767a56275SMatthew G Knepley */ 401867a56275SMatthew G Knepley 401967a56275SMatthew G Knepley /* 1) See if a specialized converter is known to the current DM and the desired class */ 40209566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 40219566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 40229566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 40239566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 40249566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 40259566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)dm, convname, &conv)); 402667a56275SMatthew G Knepley if (conv) goto foundconv; 402767a56275SMatthew G Knepley 402867a56275SMatthew G Knepley /* 2) See if a specialized converter is known to the desired DM class. */ 40299566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &B)); 40309566063dSJacob Faibussowitsch PetscCall(DMSetType(B, newtype)); 40319566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 40329566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 40339566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 40349566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 40359566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 40369566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)B, convname, &conv)); 403767a56275SMatthew G Knepley if (conv) { 40389566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 403967a56275SMatthew G Knepley goto foundconv; 404067a56275SMatthew G Knepley } 404167a56275SMatthew G Knepley 404267a56275SMatthew G Knepley #if 0 404367a56275SMatthew G Knepley /* 3) See if a good general converter is registered for the desired class */ 404467a56275SMatthew G Knepley conv = B->ops->convertfrom; 40459566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 404667a56275SMatthew G Knepley if (conv) goto foundconv; 404767a56275SMatthew G Knepley 404867a56275SMatthew G Knepley /* 4) See if a good general converter is known for the current matrix */ 404967a56275SMatthew G Knepley if (dm->ops->convert) { 405067a56275SMatthew G Knepley conv = dm->ops->convert; 405167a56275SMatthew G Knepley } 405267a56275SMatthew G Knepley if (conv) goto foundconv; 405367a56275SMatthew G Knepley #endif 405467a56275SMatthew G Knepley 405567a56275SMatthew G Knepley /* 5) Use a really basic converter. */ 405698921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No conversion possible between DM types %s and %s", ((PetscObject)dm)->type_name, newtype); 405767a56275SMatthew G Knepley 405867a56275SMatthew G Knepley foundconv: 40599566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Convert, dm, 0, 0, 0)); 40609566063dSJacob Faibussowitsch PetscCall((*conv)(dm, newtype, M)); 406112fa691eSMatthew G. Knepley /* Things that are independent of DM type: We should consult DMClone() here */ 406290b157c4SStefano Zampini { 40634fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 40646858538eSMatthew G. Knepley 40654fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 40664fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*M, maxCell, Lstart, L)); 4067c8a6034eSMark (*M)->prealloc_only = dm->prealloc_only; 40689566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->vectype)); 40699566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*M)->vectype)); 40709566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->mattype)); 40719566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*M)->mattype)); 407212fa691eSMatthew G. Knepley } 40739566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Convert, dm, 0, 0, 0)); 407467a56275SMatthew G Knepley } 40759566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)*M)); 40763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 407767a56275SMatthew G Knepley } 4078264ace61SBarry Smith 4079264ace61SBarry Smith /*--------------------------------------------------------------------------------------------------------------------*/ 4080264ace61SBarry Smith 4081264ace61SBarry Smith /*@C 4082bb7acecfSBarry Smith DMRegister - Adds a new `DM` type implementation 40831c84c290SBarry Smith 40841c84c290SBarry Smith Not Collective 40851c84c290SBarry Smith 40861c84c290SBarry Smith Input Parameters: 408720f4b53cSBarry Smith + sname - The name of a new user-defined creation routine 408820f4b53cSBarry Smith - function - The creation routine itself 408920f4b53cSBarry Smith 409020f4b53cSBarry Smith Level: advanced 40911c84c290SBarry Smith 409273ff1848SBarry Smith Note: 409320f4b53cSBarry Smith `DMRegister()` may be called multiple times to add several user-defined `DM`s 40941c84c290SBarry Smith 409560225df5SJacob Faibussowitsch Example Usage: 40961c84c290SBarry Smith .vb 4097bdf89e91SBarry Smith DMRegister("my_da", MyDMCreate); 40981c84c290SBarry Smith .ve 40991c84c290SBarry Smith 410020f4b53cSBarry Smith Then, your `DM` type can be chosen with the procedural interface via 41011c84c290SBarry Smith .vb 41021c84c290SBarry Smith DMCreate(MPI_Comm, DM *); 41031c84c290SBarry Smith DMSetType(DM,"my_da"); 41041c84c290SBarry Smith .ve 41051c84c290SBarry Smith or at runtime via the option 41061c84c290SBarry Smith .vb 41071c84c290SBarry Smith -da_type my_da 41081c84c290SBarry Smith .ve 4109264ace61SBarry Smith 41101cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMSetType()`, `DMRegisterAll()`, `DMRegisterDestroy()` 4111264ace61SBarry Smith @*/ 4112d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRegister(const char sname[], PetscErrorCode (*function)(DM)) 4113d71ae5a4SJacob Faibussowitsch { 4114264ace61SBarry Smith PetscFunctionBegin; 41159566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 41169566063dSJacob Faibussowitsch PetscCall(PetscFunctionListAdd(&DMList, sname, function)); 41173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4118264ace61SBarry Smith } 4119264ace61SBarry Smith 4120b859378eSBarry Smith /*@C 4121bb7acecfSBarry Smith DMLoad - Loads a DM that has been stored in binary with `DMView()`. 4122b859378eSBarry Smith 412320f4b53cSBarry Smith Collective 4124b859378eSBarry Smith 4125b859378eSBarry Smith Input Parameters: 4126bb7acecfSBarry Smith + newdm - the newly loaded `DM`, this needs to have been created with `DMCreate()` or 4127bb7acecfSBarry Smith some related function before a call to `DMLoad()`. 4128bb7acecfSBarry Smith - viewer - binary file viewer, obtained from `PetscViewerBinaryOpen()` or 4129bb7acecfSBarry Smith `PETSCVIEWERHDF5` file viewer, obtained from `PetscViewerHDF5Open()` 4130b859378eSBarry Smith 4131b859378eSBarry Smith Level: intermediate 4132b859378eSBarry Smith 4133b859378eSBarry Smith Notes: 413455849f57SBarry Smith The type is determined by the data in the file, any type set into the DM before this call is ignored. 4135b859378eSBarry Smith 4136bb7acecfSBarry Smith Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` format, one can save multiple `DMPLEX` 4137bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 4138bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 4139cd7e8a5eSksagiyam 41401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewerBinaryOpen()`, `DMView()`, `MatLoad()`, `VecLoad()` 4141b859378eSBarry Smith @*/ 4142d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLoad(DM newdm, PetscViewer viewer) 4143d71ae5a4SJacob Faibussowitsch { 41449331c7a4SMatthew G. Knepley PetscBool isbinary, ishdf5; 4145b859378eSBarry Smith 4146b859378eSBarry Smith PetscFunctionBegin; 4147b859378eSBarry Smith PetscValidHeaderSpecific(newdm, DM_CLASSID, 1); 4148b859378eSBarry Smith PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 41499566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckReadable(viewer)); 41509566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 41519566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 41529566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Load, viewer, 0, 0, 0)); 41539331c7a4SMatthew G. Knepley if (isbinary) { 41549331c7a4SMatthew G. Knepley PetscInt classid; 41559331c7a4SMatthew G. Knepley char type[256]; 4156b859378eSBarry Smith 41579566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &classid, 1, NULL, PETSC_INT)); 41587a8be351SBarry Smith PetscCheck(classid == DM_FILE_CLASSID, PetscObjectComm((PetscObject)newdm), PETSC_ERR_ARG_WRONG, "Not DM next in file, classid found %d", (int)classid); 41599566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, type, 256, NULL, PETSC_CHAR)); 41609566063dSJacob Faibussowitsch PetscCall(DMSetType(newdm, type)); 4161dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 41629331c7a4SMatthew G. Knepley } else if (ishdf5) { 4163dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 41649331c7a4SMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerBinaryOpen() or PetscViewerHDF5Open()"); 41659566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Load, viewer, 0, 0, 0)); 41663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4167b859378eSBarry Smith } 4168b859378eSBarry Smith 41697da65231SMatthew G Knepley /******************************** FEM Support **********************************/ 41707da65231SMatthew G Knepley 41712ecf6ec3SMatthew G. Knepley PetscErrorCode DMPrintCellIndices(PetscInt c, const char name[], PetscInt len, const PetscInt x[]) 41722ecf6ec3SMatthew G. Knepley { 41732ecf6ec3SMatthew G. Knepley PetscInt f; 41742ecf6ec3SMatthew G. Knepley 41752ecf6ec3SMatthew G. Knepley PetscFunctionBegin; 41762ecf6ec3SMatthew G. Knepley PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 41772ecf6ec3SMatthew G. Knepley for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %" PetscInt_FMT " |\n", x[f])); 41782ecf6ec3SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 41792ecf6ec3SMatthew G. Knepley } 41802ecf6ec3SMatthew G. Knepley 4181d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellVector(PetscInt c, const char name[], PetscInt len, const PetscScalar x[]) 4182d71ae5a4SJacob Faibussowitsch { 41831d47ebbbSSatish Balay PetscInt f; 41841b30c384SMatthew G Knepley 41857da65231SMatthew G Knepley PetscFunctionBegin; 418663a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 418748a46eb9SPierre Jolivet for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %g |\n", (double)PetscRealPart(x[f]))); 41883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 41897da65231SMatthew G Knepley } 41907da65231SMatthew G Knepley 41915962854dSMatthew G. Knepley PetscErrorCode DMPrintCellVectorReal(PetscInt c, const char name[], PetscInt len, const PetscReal x[]) 41925962854dSMatthew G. Knepley { 41935962854dSMatthew G. Knepley PetscInt f; 41945962854dSMatthew G. Knepley 41955962854dSMatthew G. Knepley PetscFunctionBegin; 41965962854dSMatthew G. Knepley PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 41975962854dSMatthew G. Knepley for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %g |\n", (double)x[f])); 41985962854dSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 41995962854dSMatthew G. Knepley } 42005962854dSMatthew G. Knepley 4201d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellMatrix(PetscInt c, const char name[], PetscInt rows, PetscInt cols, const PetscScalar A[]) 4202d71ae5a4SJacob Faibussowitsch { 42031b30c384SMatthew G Knepley PetscInt f, g; 42047da65231SMatthew G Knepley 42057da65231SMatthew G Knepley PetscFunctionBegin; 420663a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 42071d47ebbbSSatish Balay for (f = 0; f < rows; ++f) { 42089566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |")); 420948a46eb9SPierre Jolivet for (g = 0; g < cols; ++g) PetscCall(PetscPrintf(PETSC_COMM_SELF, " % 9.5g", (double)PetscRealPart(A[f * cols + g]))); 42109566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |\n")); 42117da65231SMatthew G Knepley } 42123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42137da65231SMatthew G Knepley } 4214e7c4fc90SDmitry Karpeev 4215d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintLocalVec(DM dm, const char name[], PetscReal tol, Vec X) 4216d71ae5a4SJacob Faibussowitsch { 42170c5b8624SToby Isaac PetscInt localSize, bs; 42180c5b8624SToby Isaac PetscMPIInt size; 42190c5b8624SToby Isaac Vec x, xglob; 42200c5b8624SToby Isaac const PetscScalar *xarray; 4221e759306cSMatthew G. Knepley 4222e759306cSMatthew G. Knepley PetscFunctionBegin; 42239566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 42249566063dSJacob Faibussowitsch PetscCall(VecDuplicate(X, &x)); 42259566063dSJacob Faibussowitsch PetscCall(VecCopy(X, x)); 422693ec0da9SPierre Jolivet PetscCall(VecFilter(x, tol)); 42279566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "%s:\n", name)); 42280c5b8624SToby Isaac if (size > 1) { 42299566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(x, &localSize)); 42309566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xarray)); 42319566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize(x, &bs)); 42329566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)dm), bs, localSize, PETSC_DETERMINE, xarray, &xglob)); 42330c5b8624SToby Isaac } else { 42340c5b8624SToby Isaac xglob = x; 42350c5b8624SToby Isaac } 42369566063dSJacob Faibussowitsch PetscCall(VecView(xglob, PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)dm)))); 42370c5b8624SToby Isaac if (size > 1) { 42389566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xglob)); 42399566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xarray)); 42400c5b8624SToby Isaac } 42419566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 42423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4243e759306cSMatthew G. Knepley } 4244e759306cSMatthew G. Knepley 424588ed4aceSMatthew G Knepley /*@ 4246bb7acecfSBarry Smith DMGetSection - Get the `PetscSection` encoding the local data layout for the `DM`. This is equivalent to `DMGetLocalSection()`. Deprecated in v3.12 4247061576a5SJed Brown 4248061576a5SJed Brown Input Parameter: 4249bb7acecfSBarry Smith . dm - The `DM` 4250061576a5SJed Brown 4251061576a5SJed Brown Output Parameter: 4252bb7acecfSBarry Smith . section - The `PetscSection` 4253061576a5SJed Brown 425420f4b53cSBarry Smith Options Database Key: 4255bb7acecfSBarry Smith . -dm_petscsection_view - View the `PetscSection` created by the `DM` 4256061576a5SJed Brown 4257061576a5SJed Brown Level: advanced 4258061576a5SJed Brown 4259061576a5SJed Brown Notes: 4260bb7acecfSBarry Smith Use `DMGetLocalSection()` in new code. 4261061576a5SJed Brown 4262bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 4263061576a5SJed Brown 42641cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetLocalSection()`, `DMSetLocalSection()`, `DMGetGlobalSection()` 4265061576a5SJed Brown @*/ 4266d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSection(DM dm, PetscSection *section) 4267d71ae5a4SJacob Faibussowitsch { 4268061576a5SJed Brown PetscFunctionBegin; 42699566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, section)); 42703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4271061576a5SJed Brown } 4272061576a5SJed Brown 4273061576a5SJed Brown /*@ 4274bb7acecfSBarry Smith DMGetLocalSection - Get the `PetscSection` encoding the local data layout for the `DM`. 427588ed4aceSMatthew G Knepley 427688ed4aceSMatthew G Knepley Input Parameter: 4277bb7acecfSBarry Smith . dm - The `DM` 427888ed4aceSMatthew G Knepley 427988ed4aceSMatthew G Knepley Output Parameter: 4280bb7acecfSBarry Smith . section - The `PetscSection` 428188ed4aceSMatthew G Knepley 428220f4b53cSBarry Smith Options Database Key: 4283bb7acecfSBarry Smith . -dm_petscsection_view - View the section created by the `DM` 4284e5893cccSMatthew G. Knepley 428588ed4aceSMatthew G Knepley Level: intermediate 428688ed4aceSMatthew G Knepley 4287bb7acecfSBarry Smith Note: 4288bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 428988ed4aceSMatthew G Knepley 42901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetGlobalSection()` 429188ed4aceSMatthew G Knepley @*/ 4292d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalSection(DM dm, PetscSection *section) 4293d71ae5a4SJacob Faibussowitsch { 429488ed4aceSMatthew G Knepley PetscFunctionBegin; 429588ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 42964f572ea9SToby Isaac PetscAssertPointer(section, 2); 42971bb6d2a8SBarry Smith if (!dm->localSection && dm->ops->createlocalsection) { 4298e5e52638SMatthew G. Knepley PetscInt d; 4299e5e52638SMatthew G. Knepley 430045480ffeSMatthew G. Knepley if (dm->setfromoptionscalled) { 430145480ffeSMatthew G. Knepley PetscObject obj = (PetscObject)dm; 430245480ffeSMatthew G. Knepley PetscViewer viewer; 430345480ffeSMatthew G. Knepley PetscViewerFormat format; 430445480ffeSMatthew G. Knepley PetscBool flg; 430545480ffeSMatthew G. Knepley 43069566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetViewer(PetscObjectComm(obj), obj->options, obj->prefix, "-dm_petscds_view", &viewer, &format, &flg)); 43079566063dSJacob Faibussowitsch if (flg) PetscCall(PetscViewerPushFormat(viewer, format)); 430845480ffeSMatthew G. Knepley for (d = 0; d < dm->Nds; ++d) { 43099566063dSJacob Faibussowitsch PetscCall(PetscDSSetFromOptions(dm->probs[d].ds)); 43109566063dSJacob Faibussowitsch if (flg) PetscCall(PetscDSView(dm->probs[d].ds, viewer)); 431145480ffeSMatthew G. Knepley } 431245480ffeSMatthew G. Knepley if (flg) { 43139566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 43149566063dSJacob Faibussowitsch PetscCall(PetscViewerPopFormat(viewer)); 4315cd791dc2SBarry Smith PetscCall(PetscOptionsRestoreViewer(&viewer)); 431645480ffeSMatthew G. Knepley } 431745480ffeSMatthew G. Knepley } 4318dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalsection); 43199566063dSJacob Faibussowitsch if (dm->localSection) PetscCall(PetscObjectViewFromOptions((PetscObject)dm->localSection, NULL, "-dm_petscsection_view")); 43202f0f8703SMatthew G. Knepley } 43211bb6d2a8SBarry Smith *section = dm->localSection; 43223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 432388ed4aceSMatthew G Knepley } 432488ed4aceSMatthew G Knepley 432588ed4aceSMatthew G Knepley /*@ 4326bb7acecfSBarry Smith DMSetSection - Set the `PetscSection` encoding the local data layout for the `DM`. This is equivalent to `DMSetLocalSection()`. Deprecated in v3.12 4327061576a5SJed Brown 4328061576a5SJed Brown Input Parameters: 4329bb7acecfSBarry Smith + dm - The `DM` 4330bb7acecfSBarry Smith - section - The `PetscSection` 4331061576a5SJed Brown 4332061576a5SJed Brown Level: advanced 4333061576a5SJed Brown 4334061576a5SJed Brown Notes: 4335bb7acecfSBarry Smith Use `DMSetLocalSection()` in new code. 4336061576a5SJed Brown 4337bb7acecfSBarry Smith Any existing `PetscSection` will be destroyed 4338061576a5SJed Brown 43391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()`, `DMSetGlobalSection()` 4340061576a5SJed Brown @*/ 4341d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSection(DM dm, PetscSection section) 4342d71ae5a4SJacob Faibussowitsch { 4343061576a5SJed Brown PetscFunctionBegin; 43449566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm, section)); 43453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4346061576a5SJed Brown } 4347061576a5SJed Brown 4348061576a5SJed Brown /*@ 4349bb7acecfSBarry Smith DMSetLocalSection - Set the `PetscSection` encoding the local data layout for the `DM`. 435088ed4aceSMatthew G Knepley 435188ed4aceSMatthew G Knepley Input Parameters: 4352bb7acecfSBarry Smith + dm - The `DM` 4353bb7acecfSBarry Smith - section - The `PetscSection` 435488ed4aceSMatthew G Knepley 435588ed4aceSMatthew G Knepley Level: intermediate 435688ed4aceSMatthew G Knepley 4357bb7acecfSBarry Smith Note: 4358bb7acecfSBarry Smith Any existing Section will be destroyed 435988ed4aceSMatthew G Knepley 43601cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMSetGlobalSection()` 436188ed4aceSMatthew G Knepley @*/ 4362d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLocalSection(DM dm, PetscSection section) 4363d71ae5a4SJacob Faibussowitsch { 4364c473ab19SMatthew G. Knepley PetscInt numFields = 0; 4365af122d2aSMatthew G Knepley PetscInt f; 436688ed4aceSMatthew G Knepley 436788ed4aceSMatthew G Knepley PetscFunctionBegin; 436888ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4369b9d85ea2SLisandro Dalcin if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 43709566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 43719566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->localSection)); 43721bb6d2a8SBarry Smith dm->localSection = section; 43739566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(dm->localSection, &numFields)); 4374af122d2aSMatthew G Knepley if (numFields) { 43759566063dSJacob Faibussowitsch PetscCall(DMSetNumFields(dm, numFields)); 4376af122d2aSMatthew G Knepley for (f = 0; f < numFields; ++f) { 43770f21e855SMatthew G. Knepley PetscObject disc; 4378af122d2aSMatthew G Knepley const char *name; 4379af122d2aSMatthew G Knepley 43809566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(dm->localSection, f, &name)); 43819566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &disc)); 43829566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName(disc, name)); 4383af122d2aSMatthew G Knepley } 4384af122d2aSMatthew G Knepley } 438550350c8eSStefano Zampini /* The global section and the SectionSF will be rebuilt 438650350c8eSStefano Zampini in the next call to DMGetGlobalSection() and DMGetSectionSF(). */ 43879566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 438850350c8eSStefano Zampini PetscCall(PetscSFDestroy(&dm->sectionSF)); 438952947b74SStefano Zampini PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 439050350c8eSStefano Zampini 439150350c8eSStefano Zampini /* Clear scratch vectors */ 439250350c8eSStefano Zampini PetscCall(DMClearGlobalVectors(dm)); 439350350c8eSStefano Zampini PetscCall(DMClearLocalVectors(dm)); 439450350c8eSStefano Zampini PetscCall(DMClearNamedGlobalVectors(dm)); 439550350c8eSStefano Zampini PetscCall(DMClearNamedLocalVectors(dm)); 43963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 439788ed4aceSMatthew G Knepley } 439888ed4aceSMatthew G Knepley 4399adc21957SMatthew G. Knepley /*@C 4400d8b4a066SPierre Jolivet DMCreateSectionPermutation - Create a permutation of the `PetscSection` chart and optionally a block structure. 4401adc21957SMatthew G. Knepley 4402adc21957SMatthew G. Knepley Input Parameter: 4403adc21957SMatthew G. Knepley . dm - The `DM` 4404adc21957SMatthew G. Knepley 44059cde84edSJose E. Roman Output Parameters: 4406adc21957SMatthew G. Knepley + perm - A permutation of the mesh points in the chart 4407*b6971eaeSBarry Smith - blockStarts - A high bit is set for the point that begins every block, or `NULL` for default blocking 4408adc21957SMatthew G. Knepley 4409adc21957SMatthew G. Knepley Level: developer 4410adc21957SMatthew G. Knepley 4411adc21957SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMGetGlobalSection()` 4412adc21957SMatthew G. Knepley @*/ 4413adc21957SMatthew G. Knepley PetscErrorCode DMCreateSectionPermutation(DM dm, IS *perm, PetscBT *blockStarts) 4414adc21957SMatthew G. Knepley { 4415adc21957SMatthew G. Knepley PetscFunctionBegin; 4416adc21957SMatthew G. Knepley *perm = NULL; 4417adc21957SMatthew G. Knepley *blockStarts = NULL; 4418adc21957SMatthew G. Knepley PetscTryTypeMethod(dm, createsectionpermutation, perm, blockStarts); 4419adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 4420adc21957SMatthew G. Knepley } 4421adc21957SMatthew G. Knepley 44229435951eSToby Isaac /*@ 4423bb7acecfSBarry Smith DMGetDefaultConstraints - Get the `PetscSection` and `Mat` that specify the local constraint interpolation. See `DMSetDefaultConstraints()` for a description of the purpose of constraint interpolation. 44249435951eSToby Isaac 442520f4b53cSBarry Smith not Collective 4426e228b242SToby Isaac 44279435951eSToby Isaac Input Parameter: 4428bb7acecfSBarry Smith . dm - The `DM` 44299435951eSToby Isaac 4430d8d19677SJose E. Roman Output Parameters: 443120f4b53cSBarry Smith + section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Returns `NULL` if there are no local constraints. 443220f4b53cSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section. Returns `NULL` if there are no local constraints. 443379769bd5SJed Brown - bias - Vector containing bias to be added to constrained dofs 44349435951eSToby Isaac 44359435951eSToby Isaac Level: advanced 44369435951eSToby Isaac 4437bb7acecfSBarry Smith Note: 4438bb7acecfSBarry Smith This gets borrowed references, so the user should not destroy the `PetscSection`, `Mat`, or `Vec`. 44399435951eSToby Isaac 44401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDefaultConstraints()` 44419435951eSToby Isaac @*/ 4442d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDefaultConstraints(DM dm, PetscSection *section, Mat *mat, Vec *bias) 4443d71ae5a4SJacob Faibussowitsch { 44449435951eSToby Isaac PetscFunctionBegin; 44459435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4446dbbe0bcdSBarry Smith if (!dm->defaultConstraint.section && !dm->defaultConstraint.mat && dm->ops->createdefaultconstraints) PetscUseTypeMethod(dm, createdefaultconstraints); 44473b8ba7d1SJed Brown if (section) *section = dm->defaultConstraint.section; 44483b8ba7d1SJed Brown if (mat) *mat = dm->defaultConstraint.mat; 444979769bd5SJed Brown if (bias) *bias = dm->defaultConstraint.bias; 44503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44519435951eSToby Isaac } 44529435951eSToby Isaac 44539435951eSToby Isaac /*@ 4454bb7acecfSBarry Smith DMSetDefaultConstraints - Set the `PetscSection` and `Mat` that specify the local constraint interpolation. 44559435951eSToby Isaac 445620f4b53cSBarry Smith Collective 4457e228b242SToby Isaac 44589435951eSToby Isaac Input Parameters: 4459bb7acecfSBarry Smith + dm - The `DM` 4460bb7acecfSBarry Smith . section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 446120f4b53cSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section: `NULL` indicates no constraints. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 446220f4b53cSBarry Smith - bias - A bias vector to be added to constrained values in the local vector. `NULL` indicates no bias. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 44639435951eSToby Isaac 44649435951eSToby Isaac Level: advanced 44659435951eSToby Isaac 446620f4b53cSBarry Smith Notes: 446720f4b53cSBarry Smith If a constraint matrix is specified, then it is applied during `DMGlobalToLocalEnd()` when mode is `INSERT_VALUES`, `INSERT_BC_VALUES`, or `INSERT_ALL_VALUES`. Without a constraint matrix, the local vector l returned by `DMGlobalToLocalEnd()` contains values that have been scattered from a global vector without modification; with a constraint matrix A, l is modified by computing c = A * l + bias, l[s[i]] = c[i], where the scatter s is defined by the `PetscSection` returned by `DMGetDefaultConstraints()`. 446820f4b53cSBarry Smith 446920f4b53cSBarry Smith If a constraint matrix is specified, then its adjoint is applied during `DMLocalToGlobalBegin()` when mode is `ADD_VALUES`, `ADD_BC_VALUES`, or `ADD_ALL_VALUES`. Without a constraint matrix, the local vector l is accumulated into a global vector without modification; with a constraint matrix A, l is first modified by computing c[i] = l[s[i]], l[s[i]] = 0, l = l + A'*c, which is the adjoint of the operation described above. Any bias, if specified, is ignored when accumulating. 447020f4b53cSBarry Smith 4471bb7acecfSBarry Smith This increments the references of the `PetscSection`, `Mat`, and `Vec`, so they user can destroy them. 44729435951eSToby Isaac 44731cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDefaultConstraints()` 44749435951eSToby Isaac @*/ 4475d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDefaultConstraints(DM dm, PetscSection section, Mat mat, Vec bias) 4476d71ae5a4SJacob Faibussowitsch { 4477e228b242SToby Isaac PetscMPIInt result; 44789435951eSToby Isaac 44799435951eSToby Isaac PetscFunctionBegin; 44809435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4481e228b242SToby Isaac if (section) { 4482e228b242SToby Isaac PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 44839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)section), &result)); 44847a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint section must have local communicator"); 4485e228b242SToby Isaac } 4486e228b242SToby Isaac if (mat) { 4487e228b242SToby Isaac PetscValidHeaderSpecific(mat, MAT_CLASSID, 3); 44889566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)mat), &result)); 44897a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint matrix must have local communicator"); 4490e228b242SToby Isaac } 449179769bd5SJed Brown if (bias) { 449279769bd5SJed Brown PetscValidHeaderSpecific(bias, VEC_CLASSID, 4); 44939566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)bias), &result)); 449479769bd5SJed Brown PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint bias must have local communicator"); 449579769bd5SJed Brown } 44969566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 44979566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->defaultConstraint.section)); 44983b8ba7d1SJed Brown dm->defaultConstraint.section = section; 44999566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mat)); 45009566063dSJacob Faibussowitsch PetscCall(MatDestroy(&dm->defaultConstraint.mat)); 45013b8ba7d1SJed Brown dm->defaultConstraint.mat = mat; 45029566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)bias)); 45039566063dSJacob Faibussowitsch PetscCall(VecDestroy(&dm->defaultConstraint.bias)); 450479769bd5SJed Brown dm->defaultConstraint.bias = bias; 45053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 45069435951eSToby Isaac } 45079435951eSToby Isaac 4508497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 4509507e4973SMatthew G. Knepley /* 4510bb7acecfSBarry Smith DMDefaultSectionCheckConsistency - Check the consistentcy of the global and local sections. Generates and error if they are not consistent. 4511507e4973SMatthew G. Knepley 4512507e4973SMatthew G. Knepley Input Parameters: 4513bb7acecfSBarry Smith + dm - The `DM` 4514bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4515bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 4516507e4973SMatthew G. Knepley 4517507e4973SMatthew G. Knepley Level: intermediate 4518507e4973SMatthew G. Knepley 45191cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()` 4520507e4973SMatthew G. Knepley */ 4521d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(DM dm, PetscSection localSection, PetscSection globalSection) 4522d71ae5a4SJacob Faibussowitsch { 4523507e4973SMatthew G. Knepley MPI_Comm comm; 4524507e4973SMatthew G. Knepley PetscLayout layout; 4525507e4973SMatthew G. Knepley const PetscInt *ranges; 4526507e4973SMatthew G. Knepley PetscInt pStart, pEnd, p, nroots; 4527507e4973SMatthew G. Knepley PetscMPIInt size, rank; 4528507e4973SMatthew G. Knepley PetscBool valid = PETSC_TRUE, gvalid; 4529507e4973SMatthew G. Knepley 4530507e4973SMatthew G. Knepley PetscFunctionBegin; 45319566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 4532507e4973SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45339566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 45349566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 45359566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(globalSection, &pStart, &pEnd)); 45369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &nroots)); 45379566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &layout)); 45389566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(layout, 1)); 45399566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(layout, nroots)); 45409566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(layout)); 45419566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(layout, &ranges)); 4542507e4973SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 4543f741bcd2SMatthew G. Knepley PetscInt dof, cdof, off, gdof, gcdof, goff, gsize, d; 4544507e4973SMatthew G. Knepley 45459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(localSection, p, &dof)); 45469566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(localSection, p, &off)); 45479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(localSection, p, &cdof)); 45489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(globalSection, p, &gdof)); 45499566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(globalSection, p, &gcdof)); 45509566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalSection, p, &goff)); 4551507e4973SMatthew G. Knepley if (!gdof) continue; /* Censored point */ 45529371c9d4SSatish Balay if ((gdof < 0 ? -(gdof + 1) : gdof) != dof) { 45539371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local dof %" PetscInt_FMT "\n", rank, gdof, p, dof)); 45549371c9d4SSatish Balay valid = PETSC_FALSE; 45559371c9d4SSatish Balay } 45569371c9d4SSatish Balay if (gcdof && (gcdof != cdof)) { 45579371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global constraints %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local constraints %" PetscInt_FMT "\n", rank, gcdof, p, cdof)); 45589371c9d4SSatish Balay valid = PETSC_FALSE; 45599371c9d4SSatish Balay } 4560507e4973SMatthew G. Knepley if (gdof < 0) { 4561507e4973SMatthew G. Knepley gsize = gdof < 0 ? -(gdof + 1) - gcdof : gdof - gcdof; 4562507e4973SMatthew G. Knepley for (d = 0; d < gsize; ++d) { 4563507e4973SMatthew G. Knepley PetscInt offset = -(goff + 1) + d, r; 4564507e4973SMatthew G. Knepley 45659566063dSJacob Faibussowitsch PetscCall(PetscFindInt(offset, size + 1, ranges, &r)); 4566507e4973SMatthew G. Knepley if (r < 0) r = -(r + 2); 45679371c9d4SSatish Balay if ((r < 0) || (r >= size)) { 45689371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Point %" PetscInt_FMT " mapped to invalid process %" PetscInt_FMT " (%" PetscInt_FMT ", %" PetscInt_FMT ")\n", rank, p, r, gdof, goff)); 45699371c9d4SSatish Balay valid = PETSC_FALSE; 45709371c9d4SSatish Balay break; 45719371c9d4SSatish Balay } 4572507e4973SMatthew G. Knepley } 4573507e4973SMatthew G. Knepley } 4574507e4973SMatthew G. Knepley } 45759566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&layout)); 45769566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, NULL)); 45771c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&valid, &gvalid, 1, MPIU_BOOL, MPI_LAND, comm)); 4578507e4973SMatthew G. Knepley if (!gvalid) { 45799566063dSJacob Faibussowitsch PetscCall(DMView(dm, NULL)); 4580507e4973SMatthew G. Knepley SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Inconsistent local and global sections"); 4581507e4973SMatthew G. Knepley } 45823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4583507e4973SMatthew G. Knepley } 4584f741bcd2SMatthew G. Knepley #endif 4585507e4973SMatthew G. Knepley 45865f06a3ddSJed Brown static PetscErrorCode DMGetIsoperiodicPointSF_Internal(DM dm, PetscSF *sf) 45876725e60dSJed Brown { 45886725e60dSJed Brown PetscErrorCode (*f)(DM, PetscSF *); 45894d86920dSPierre Jolivet 45906725e60dSJed Brown PetscFunctionBegin; 45916725e60dSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45924f572ea9SToby Isaac PetscAssertPointer(sf, 2); 45935f06a3ddSJed Brown PetscCall(PetscObjectQueryFunction((PetscObject)dm, "DMGetIsoperiodicPointSF_C", &f)); 45946725e60dSJed Brown if (f) PetscCall(f(dm, sf)); 45956725e60dSJed Brown else *sf = dm->sf; 45963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 45976725e60dSJed Brown } 45986725e60dSJed Brown 459988ed4aceSMatthew G Knepley /*@ 4600bb7acecfSBarry Smith DMGetGlobalSection - Get the `PetscSection` encoding the global data layout for the `DM`. 460188ed4aceSMatthew G Knepley 460220f4b53cSBarry Smith Collective 46038b1ab98fSJed Brown 460488ed4aceSMatthew G Knepley Input Parameter: 4605bb7acecfSBarry Smith . dm - The `DM` 460688ed4aceSMatthew G Knepley 460788ed4aceSMatthew G Knepley Output Parameter: 4608bb7acecfSBarry Smith . section - The `PetscSection` 460988ed4aceSMatthew G Knepley 461088ed4aceSMatthew G Knepley Level: intermediate 461188ed4aceSMatthew G Knepley 4612bb7acecfSBarry Smith Note: 4613bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 461488ed4aceSMatthew G Knepley 46151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()` 461688ed4aceSMatthew G Knepley @*/ 4617d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetGlobalSection(DM dm, PetscSection *section) 4618d71ae5a4SJacob Faibussowitsch { 461988ed4aceSMatthew G Knepley PetscFunctionBegin; 462088ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46214f572ea9SToby Isaac PetscAssertPointer(section, 2); 46221bb6d2a8SBarry Smith if (!dm->globalSection) { 4623fd59a867SMatthew G. Knepley PetscSection s; 46246725e60dSJed Brown PetscSF sf; 4625fd59a867SMatthew G. Knepley 46269566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 46277a8be351SBarry Smith PetscCheck(s, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a default PetscSection in order to create a global PetscSection"); 46287a8be351SBarry Smith PetscCheck(dm->sf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a point PetscSF in order to create a global PetscSection"); 46295f06a3ddSJed Brown PetscCall(DMGetIsoperiodicPointSF_Internal(dm, &sf)); 4630eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionCreateGlobalSection(s, sf, PETSC_TRUE, PETSC_FALSE, PETSC_FALSE, &dm->globalSection)); 46319566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&dm->map)); 46329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetValueLayout(PetscObjectComm((PetscObject)dm), dm->globalSection, &dm->map)); 46339566063dSJacob Faibussowitsch PetscCall(PetscSectionViewFromOptions(dm->globalSection, NULL, "-global_section_view")); 463488ed4aceSMatthew G Knepley } 46351bb6d2a8SBarry Smith *section = dm->globalSection; 46363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 463788ed4aceSMatthew G Knepley } 463888ed4aceSMatthew G Knepley 4639b21d0597SMatthew G Knepley /*@ 4640bb7acecfSBarry Smith DMSetGlobalSection - Set the `PetscSection` encoding the global data layout for the `DM`. 4641b21d0597SMatthew G Knepley 4642b21d0597SMatthew G Knepley Input Parameters: 4643bb7acecfSBarry Smith + dm - The `DM` 46442fe279fdSBarry Smith - section - The PetscSection, or `NULL` 4645b21d0597SMatthew G Knepley 4646b21d0597SMatthew G Knepley Level: intermediate 4647b21d0597SMatthew G Knepley 4648bb7acecfSBarry Smith Note: 4649bb7acecfSBarry Smith Any existing `PetscSection` will be destroyed 4650b21d0597SMatthew G Knepley 46511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetGlobalSection()`, `DMSetLocalSection()` 4652b21d0597SMatthew G Knepley @*/ 4653d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetGlobalSection(DM dm, PetscSection section) 4654d71ae5a4SJacob Faibussowitsch { 4655b21d0597SMatthew G Knepley PetscFunctionBegin; 4656b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46575080bbdbSMatthew G Knepley if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 46589566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 46599566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 46601bb6d2a8SBarry Smith dm->globalSection = section; 4661497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 46629566063dSJacob Faibussowitsch if (section) PetscCall(DMDefaultSectionCheckConsistency_Internal(dm, dm->localSection, section)); 4663507e4973SMatthew G. Knepley #endif 466450350c8eSStefano Zampini /* Clear global scratch vectors and sectionSF */ 466550350c8eSStefano Zampini PetscCall(PetscSFDestroy(&dm->sectionSF)); 466652947b74SStefano Zampini PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 466750350c8eSStefano Zampini PetscCall(DMClearGlobalVectors(dm)); 466850350c8eSStefano Zampini PetscCall(DMClearNamedGlobalVectors(dm)); 46693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4670b21d0597SMatthew G Knepley } 4671b21d0597SMatthew G Knepley 467288ed4aceSMatthew G Knepley /*@ 4673bb7acecfSBarry Smith DMGetSectionSF - Get the `PetscSF` encoding the parallel dof overlap for the `DM`. If it has not been set, 4674bb7acecfSBarry Smith it is created from the default `PetscSection` layouts in the `DM`. 467588ed4aceSMatthew G Knepley 467688ed4aceSMatthew G Knepley Input Parameter: 4677bb7acecfSBarry Smith . dm - The `DM` 467888ed4aceSMatthew G Knepley 467988ed4aceSMatthew G Knepley Output Parameter: 4680bb7acecfSBarry Smith . sf - The `PetscSF` 468188ed4aceSMatthew G Knepley 468288ed4aceSMatthew G Knepley Level: intermediate 468388ed4aceSMatthew G Knepley 4684bb7acecfSBarry Smith Note: 4685bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 468688ed4aceSMatthew G Knepley 46871cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetSectionSF()`, `DMCreateSectionSF()` 468888ed4aceSMatthew G Knepley @*/ 4689d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSectionSF(DM dm, PetscSF *sf) 4690d71ae5a4SJacob Faibussowitsch { 469188ed4aceSMatthew G Knepley PetscInt nroots; 469288ed4aceSMatthew G Knepley 469388ed4aceSMatthew G Knepley PetscFunctionBegin; 469488ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46954f572ea9SToby Isaac PetscAssertPointer(sf, 2); 469648a46eb9SPierre Jolivet if (!dm->sectionSF) PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 46979566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sectionSF, &nroots, NULL, NULL, NULL)); 469888ed4aceSMatthew G Knepley if (nroots < 0) { 469988ed4aceSMatthew G Knepley PetscSection section, gSection; 470088ed4aceSMatthew G Knepley 47019566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 470231ea6d37SMatthew G Knepley if (section) { 47039566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gSection)); 47049566063dSJacob Faibussowitsch PetscCall(DMCreateSectionSF(dm, section, gSection)); 470531ea6d37SMatthew G Knepley } else { 47060298fd71SBarry Smith *sf = NULL; 47073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 470831ea6d37SMatthew G Knepley } 470988ed4aceSMatthew G Knepley } 47101bb6d2a8SBarry Smith *sf = dm->sectionSF; 47113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 471288ed4aceSMatthew G Knepley } 471388ed4aceSMatthew G Knepley 471488ed4aceSMatthew G Knepley /*@ 4715bb7acecfSBarry Smith DMSetSectionSF - Set the `PetscSF` encoding the parallel dof overlap for the `DM` 471688ed4aceSMatthew G Knepley 471788ed4aceSMatthew G Knepley Input Parameters: 4718bb7acecfSBarry Smith + dm - The `DM` 4719bb7acecfSBarry Smith - sf - The `PetscSF` 472088ed4aceSMatthew G Knepley 472188ed4aceSMatthew G Knepley Level: intermediate 472288ed4aceSMatthew G Knepley 4723bb7acecfSBarry Smith Note: 4724bb7acecfSBarry Smith Any previous `PetscSF` is destroyed 472588ed4aceSMatthew G Knepley 47261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMCreateSectionSF()` 472788ed4aceSMatthew G Knepley @*/ 4728d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSectionSF(DM dm, PetscSF sf) 4729d71ae5a4SJacob Faibussowitsch { 473088ed4aceSMatthew G Knepley PetscFunctionBegin; 473188ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4732b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 47339566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 47349566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sectionSF)); 47351bb6d2a8SBarry Smith dm->sectionSF = sf; 47363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 473788ed4aceSMatthew G Knepley } 473888ed4aceSMatthew G Knepley 473988ed4aceSMatthew G Knepley /*@C 4740bb7acecfSBarry Smith DMCreateSectionSF - Create the `PetscSF` encoding the parallel dof overlap for the `DM` based upon the `PetscSection`s 474188ed4aceSMatthew G Knepley describing the data layout. 474288ed4aceSMatthew G Knepley 474388ed4aceSMatthew G Knepley Input Parameters: 4744bb7acecfSBarry Smith + dm - The `DM` 4745bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4746bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 474788ed4aceSMatthew G Knepley 47481bb6d2a8SBarry Smith Level: developer 47491bb6d2a8SBarry Smith 4750bb7acecfSBarry Smith Note: 4751bb7acecfSBarry Smith One usually uses `DMGetSectionSF()` to obtain the `PetscSF` 4752bb7acecfSBarry Smith 475373ff1848SBarry Smith Developer Note: 4754bb7acecfSBarry Smith Since this routine has for arguments the two sections from the `DM` and puts the resulting `PetscSF` 4755bb7acecfSBarry Smith directly into the `DM`, perhaps this function should not take the local and global sections as 4756*b6971eaeSBarry Smith input and should just obtain them from the `DM`? Plus PETSc creation functions return the thing 4757*b6971eaeSBarry Smith they create, this returns nothing 47581bb6d2a8SBarry Smith 47591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMGetLocalSection()`, `DMGetGlobalSection()` 476088ed4aceSMatthew G Knepley @*/ 4761d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSectionSF(DM dm, PetscSection localSection, PetscSection globalSection) 4762d71ae5a4SJacob Faibussowitsch { 476388ed4aceSMatthew G Knepley PetscFunctionBegin; 476488ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47659566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphSection(dm->sectionSF, localSection, globalSection)); 47663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 476788ed4aceSMatthew G Knepley } 4768af122d2aSMatthew G Knepley 4769b21d0597SMatthew G Knepley /*@ 4770bb7acecfSBarry Smith DMGetPointSF - Get the `PetscSF` encoding the parallel section point overlap for the `DM`. 4771bb7acecfSBarry Smith 4772bb7acecfSBarry Smith Not collective but the resulting `PetscSF` is collective 4773b21d0597SMatthew G Knepley 4774b21d0597SMatthew G Knepley Input Parameter: 4775bb7acecfSBarry Smith . dm - The `DM` 4776b21d0597SMatthew G Knepley 4777b21d0597SMatthew G Knepley Output Parameter: 4778bb7acecfSBarry Smith . sf - The `PetscSF` 4779b21d0597SMatthew G Knepley 4780b21d0597SMatthew G Knepley Level: intermediate 4781b21d0597SMatthew G Knepley 4782bb7acecfSBarry Smith Note: 4783bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 4784b21d0597SMatthew G Knepley 47851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4786b21d0597SMatthew G Knepley @*/ 4787d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetPointSF(DM dm, PetscSF *sf) 4788d71ae5a4SJacob Faibussowitsch { 4789b21d0597SMatthew G Knepley PetscFunctionBegin; 4790b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47914f572ea9SToby Isaac PetscAssertPointer(sf, 2); 4792b21d0597SMatthew G Knepley *sf = dm->sf; 47933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4794b21d0597SMatthew G Knepley } 4795b21d0597SMatthew G Knepley 4796057b4bcdSMatthew G Knepley /*@ 4797bb7acecfSBarry Smith DMSetPointSF - Set the `PetscSF` encoding the parallel section point overlap for the `DM`. 4798bb7acecfSBarry Smith 479920f4b53cSBarry Smith Collective 4800057b4bcdSMatthew G Knepley 4801057b4bcdSMatthew G Knepley Input Parameters: 4802bb7acecfSBarry Smith + dm - The `DM` 4803bb7acecfSBarry Smith - sf - The `PetscSF` 4804057b4bcdSMatthew G Knepley 4805057b4bcdSMatthew G Knepley Level: intermediate 4806057b4bcdSMatthew G Knepley 48071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4808057b4bcdSMatthew G Knepley @*/ 4809d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetPointSF(DM dm, PetscSF sf) 4810d71ae5a4SJacob Faibussowitsch { 4811057b4bcdSMatthew G Knepley PetscFunctionBegin; 4812057b4bcdSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4813b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 48149566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 48159566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sf)); 4816057b4bcdSMatthew G Knepley dm->sf = sf; 48173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4818057b4bcdSMatthew G Knepley } 4819057b4bcdSMatthew G Knepley 48204f37162bSMatthew G. Knepley /*@ 4821bb7acecfSBarry Smith DMGetNaturalSF - Get the `PetscSF` encoding the map back to the original mesh ordering 48224f37162bSMatthew G. Knepley 48234f37162bSMatthew G. Knepley Input Parameter: 4824bb7acecfSBarry Smith . dm - The `DM` 48254f37162bSMatthew G. Knepley 48264f37162bSMatthew G. Knepley Output Parameter: 4827bb7acecfSBarry Smith . sf - The `PetscSF` 48284f37162bSMatthew G. Knepley 48294f37162bSMatthew G. Knepley Level: intermediate 48304f37162bSMatthew G. Knepley 4831bb7acecfSBarry Smith Note: 4832bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 48334f37162bSMatthew G. Knepley 48341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 48354f37162bSMatthew G. Knepley @*/ 4836d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNaturalSF(DM dm, PetscSF *sf) 4837d71ae5a4SJacob Faibussowitsch { 48384f37162bSMatthew G. Knepley PetscFunctionBegin; 48394f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48404f572ea9SToby Isaac PetscAssertPointer(sf, 2); 48414f37162bSMatthew G. Knepley *sf = dm->sfNatural; 48423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48434f37162bSMatthew G. Knepley } 48444f37162bSMatthew G. Knepley 48454f37162bSMatthew G. Knepley /*@ 48464f37162bSMatthew G. Knepley DMSetNaturalSF - Set the PetscSF encoding the map back to the original mesh ordering 48474f37162bSMatthew G. Knepley 48484f37162bSMatthew G. Knepley Input Parameters: 48494f37162bSMatthew G. Knepley + dm - The DM 48504f37162bSMatthew G. Knepley - sf - The PetscSF 48514f37162bSMatthew G. Knepley 48524f37162bSMatthew G. Knepley Level: intermediate 48534f37162bSMatthew G. Knepley 48541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 48554f37162bSMatthew G. Knepley @*/ 4856d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNaturalSF(DM dm, PetscSF sf) 4857d71ae5a4SJacob Faibussowitsch { 48584f37162bSMatthew G. Knepley PetscFunctionBegin; 48594f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48604f37162bSMatthew G. Knepley if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 48619566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 48629566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sfNatural)); 48634f37162bSMatthew G. Knepley dm->sfNatural = sf; 48643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48654f37162bSMatthew G. Knepley } 48664f37162bSMatthew G. Knepley 4867d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetDefaultAdjacency_Private(DM dm, PetscInt f, PetscObject disc) 4868d71ae5a4SJacob Faibussowitsch { 486934aa8a36SMatthew G. Knepley PetscClassId id; 487034aa8a36SMatthew G. Knepley 487134aa8a36SMatthew G. Knepley PetscFunctionBegin; 48729566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 487334aa8a36SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 48749566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 487534aa8a36SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 48769566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_TRUE, PETSC_FALSE)); 487717c1d62eSMatthew G. Knepley } else { 48789566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 487934aa8a36SMatthew G. Knepley } 48803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 488134aa8a36SMatthew G. Knepley } 488234aa8a36SMatthew G. Knepley 4883d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFieldEnlarge_Static(DM dm, PetscInt NfNew) 4884d71ae5a4SJacob Faibussowitsch { 488544a7f3ddSMatthew G. Knepley RegionField *tmpr; 488644a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf, f; 488744a7f3ddSMatthew G. Knepley 488844a7f3ddSMatthew G. Knepley PetscFunctionBegin; 48893ba16761SJacob Faibussowitsch if (Nf >= NfNew) PetscFunctionReturn(PETSC_SUCCESS); 48909566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NfNew, &tmpr)); 489144a7f3ddSMatthew G. Knepley for (f = 0; f < Nf; ++f) tmpr[f] = dm->fields[f]; 48929371c9d4SSatish Balay for (f = Nf; f < NfNew; ++f) { 48939371c9d4SSatish Balay tmpr[f].disc = NULL; 48949371c9d4SSatish Balay tmpr[f].label = NULL; 48959371c9d4SSatish Balay tmpr[f].avoidTensor = PETSC_FALSE; 48969371c9d4SSatish Balay } 48979566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 489844a7f3ddSMatthew G. Knepley dm->Nf = NfNew; 489944a7f3ddSMatthew G. Knepley dm->fields = tmpr; 49003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 490144a7f3ddSMatthew G. Knepley } 490244a7f3ddSMatthew G. Knepley 490344a7f3ddSMatthew G. Knepley /*@ 490420f4b53cSBarry Smith DMClearFields - Remove all fields from the `DM` 490544a7f3ddSMatthew G. Knepley 490620f4b53cSBarry Smith Logically Collective 490744a7f3ddSMatthew G. Knepley 490844a7f3ddSMatthew G. Knepley Input Parameter: 490920f4b53cSBarry Smith . dm - The `DM` 491044a7f3ddSMatthew G. Knepley 491144a7f3ddSMatthew G. Knepley Level: intermediate 491244a7f3ddSMatthew G. Knepley 49131cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetNumFields()`, `DMSetField()` 491444a7f3ddSMatthew G. Knepley @*/ 4915d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearFields(DM dm) 4916d71ae5a4SJacob Faibussowitsch { 491744a7f3ddSMatthew G. Knepley PetscInt f; 491844a7f3ddSMatthew G. Knepley 491944a7f3ddSMatthew G. Knepley PetscFunctionBegin; 492044a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 492144a7f3ddSMatthew G. Knepley for (f = 0; f < dm->Nf; ++f) { 49229566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 49239566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 492444a7f3ddSMatthew G. Knepley } 49259566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 492644a7f3ddSMatthew G. Knepley dm->fields = NULL; 492744a7f3ddSMatthew G. Knepley dm->Nf = 0; 49283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 492944a7f3ddSMatthew G. Knepley } 493044a7f3ddSMatthew G. Knepley 4931689b5837SMatthew G. Knepley /*@ 493220f4b53cSBarry Smith DMGetNumFields - Get the number of fields in the `DM` 4933689b5837SMatthew G. Knepley 493420f4b53cSBarry Smith Not Collective 4935689b5837SMatthew G. Knepley 4936689b5837SMatthew G. Knepley Input Parameter: 493720f4b53cSBarry Smith . dm - The `DM` 4938689b5837SMatthew G. Knepley 4939689b5837SMatthew G. Knepley Output Parameter: 494060225df5SJacob Faibussowitsch . numFields - The number of fields 4941689b5837SMatthew G. Knepley 4942689b5837SMatthew G. Knepley Level: intermediate 4943689b5837SMatthew G. Knepley 49441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNumFields()`, `DMSetField()` 4945689b5837SMatthew G. Knepley @*/ 4946d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumFields(DM dm, PetscInt *numFields) 4947d71ae5a4SJacob Faibussowitsch { 49480f21e855SMatthew G. Knepley PetscFunctionBegin; 49490f21e855SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49504f572ea9SToby Isaac PetscAssertPointer(numFields, 2); 495144a7f3ddSMatthew G. Knepley *numFields = dm->Nf; 49523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4953af122d2aSMatthew G Knepley } 4954af122d2aSMatthew G Knepley 4955689b5837SMatthew G. Knepley /*@ 495620f4b53cSBarry Smith DMSetNumFields - Set the number of fields in the `DM` 4957689b5837SMatthew G. Knepley 495820f4b53cSBarry Smith Logically Collective 4959689b5837SMatthew G. Knepley 4960689b5837SMatthew G. Knepley Input Parameters: 496120f4b53cSBarry Smith + dm - The `DM` 496260225df5SJacob Faibussowitsch - numFields - The number of fields 4963689b5837SMatthew G. Knepley 4964689b5837SMatthew G. Knepley Level: intermediate 4965689b5837SMatthew G. Knepley 49661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetField()` 4967689b5837SMatthew G. Knepley @*/ 4968d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNumFields(DM dm, PetscInt numFields) 4969d71ae5a4SJacob Faibussowitsch { 49700f21e855SMatthew G. Knepley PetscInt Nf, f; 4971af122d2aSMatthew G Knepley 4972af122d2aSMatthew G Knepley PetscFunctionBegin; 4973af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49749566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 49750f21e855SMatthew G. Knepley for (f = Nf; f < numFields; ++f) { 49760f21e855SMatthew G. Knepley PetscContainer obj; 49770f21e855SMatthew G. Knepley 49789566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject)dm), &obj)); 49799566063dSJacob Faibussowitsch PetscCall(DMAddField(dm, NULL, (PetscObject)obj)); 49809566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&obj)); 4981af122d2aSMatthew G Knepley } 49823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4983af122d2aSMatthew G Knepley } 4984af122d2aSMatthew G Knepley 4985c1929be8SMatthew G. Knepley /*@ 4986bb7acecfSBarry Smith DMGetField - Return the `DMLabel` and discretization object for a given `DM` field 4987c1929be8SMatthew G. Knepley 498820f4b53cSBarry Smith Not Collective 4989c1929be8SMatthew G. Knepley 4990c1929be8SMatthew G. Knepley Input Parameters: 4991bb7acecfSBarry Smith + dm - The `DM` 4992c1929be8SMatthew G. Knepley - f - The field number 4993c1929be8SMatthew G. Knepley 499444a7f3ddSMatthew G. Knepley Output Parameters: 499520f4b53cSBarry Smith + label - The label indicating the support of the field, or `NULL` for the entire mesh (pass in `NULL` if not needed) 499620f4b53cSBarry Smith - disc - The discretization object (pass in `NULL` if not needed) 4997c1929be8SMatthew G. Knepley 499844a7f3ddSMatthew G. Knepley Level: intermediate 4999c1929be8SMatthew G. Knepley 50001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()` 5001c1929be8SMatthew G. Knepley @*/ 5002d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetField(DM dm, PetscInt f, DMLabel *label, PetscObject *disc) 5003d71ae5a4SJacob Faibussowitsch { 5004af122d2aSMatthew G Knepley PetscFunctionBegin; 5005af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 50064f572ea9SToby Isaac PetscAssertPointer(disc, 4); 50077a8be351SBarry Smith PetscCheck((f >= 0) && (f < dm->Nf), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, dm->Nf); 500844a7f3ddSMatthew G. Knepley if (label) *label = dm->fields[f].label; 5009bb7acecfSBarry Smith if (disc) *disc = dm->fields[f].disc; 50103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5011decb47aaSMatthew G. Knepley } 5012decb47aaSMatthew G. Knepley 5013083401c6SMatthew G. Knepley /* Does not clear the DS */ 5014d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField_Internal(DM dm, PetscInt f, DMLabel label, PetscObject disc) 5015d71ae5a4SJacob Faibussowitsch { 5016083401c6SMatthew G. Knepley PetscFunctionBegin; 50179566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, f + 1)); 50189566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 50199566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 5020083401c6SMatthew G. Knepley dm->fields[f].label = label; 5021bb7acecfSBarry Smith dm->fields[f].disc = disc; 50229566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 5023bb7acecfSBarry Smith PetscCall(PetscObjectReference((PetscObject)disc)); 50243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5025083401c6SMatthew G. Knepley } 5026083401c6SMatthew G. Knepley 502746560f82SMatthew G. Knepley /*@C 5028bb7acecfSBarry Smith DMSetField - Set the discretization object for a given `DM` field. Usually one would call `DMAddField()` which automatically handles 5029bb7acecfSBarry Smith the field numbering. 5030c1929be8SMatthew G. Knepley 503120f4b53cSBarry Smith Logically Collective 5032c1929be8SMatthew G. Knepley 5033c1929be8SMatthew G. Knepley Input Parameters: 5034bb7acecfSBarry Smith + dm - The `DM` 5035c1929be8SMatthew G. Knepley . f - The field number 503620f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh 5037bb7acecfSBarry Smith - disc - The discretization object 5038c1929be8SMatthew G. Knepley 503944a7f3ddSMatthew G. Knepley Level: intermediate 5040c1929be8SMatthew G. Knepley 50411cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()` 5042c1929be8SMatthew G. Knepley @*/ 5043d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField(DM dm, PetscInt f, DMLabel label, PetscObject disc) 5044d71ae5a4SJacob Faibussowitsch { 5045decb47aaSMatthew G. Knepley PetscFunctionBegin; 5046decb47aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5047e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 5048bb7acecfSBarry Smith PetscValidHeader(disc, 4); 50497a8be351SBarry Smith PetscCheck(f >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be non-negative", f); 5050bb7acecfSBarry Smith PetscCall(DMSetField_Internal(dm, f, label, disc)); 5051bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, f, disc)); 50529566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 50533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 505444a7f3ddSMatthew G. Knepley } 505544a7f3ddSMatthew G. Knepley 505646560f82SMatthew G. Knepley /*@C 5057bb7acecfSBarry Smith DMAddField - Add a field to a `DM` object. A field is a function space defined by of a set of discretization points (geometric entities) 5058bb7acecfSBarry Smith and a discretization object that defines the function space associated with those points. 505944a7f3ddSMatthew G. Knepley 506020f4b53cSBarry Smith Logically Collective 506144a7f3ddSMatthew G. Knepley 506244a7f3ddSMatthew G. Knepley Input Parameters: 5063bb7acecfSBarry Smith + dm - The `DM` 506420f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh 5065bb7acecfSBarry Smith - disc - The discretization object 506644a7f3ddSMatthew G. Knepley 506744a7f3ddSMatthew G. Knepley Level: intermediate 506844a7f3ddSMatthew G. Knepley 5069bb7acecfSBarry Smith Notes: 5070bb7acecfSBarry Smith The label already exists or will be added to the `DM` with `DMSetLabel()`. 5071bb7acecfSBarry Smith 5072da81f932SPierre Jolivet For example, a piecewise continuous pressure field can be defined by coefficients at the cell centers of a mesh and piecewise constant functions 5073bb7acecfSBarry Smith within each cell. Thus a specific function in the space is defined by the combination of a `Vec` containing the coefficients, a `DM` defining the 5074bb7acecfSBarry Smith geometry entities, a `DMLabel` indicating a subset of those geometric entities, and a discretization object, such as a `PetscFE`. 5075bb7acecfSBarry Smith 50761cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLabel()`, `DMSetField()`, `DMGetField()`, `PetscFE` 507744a7f3ddSMatthew G. Knepley @*/ 5078d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddField(DM dm, DMLabel label, PetscObject disc) 5079d71ae5a4SJacob Faibussowitsch { 508044a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf; 508144a7f3ddSMatthew G. Knepley 508244a7f3ddSMatthew G. Knepley PetscFunctionBegin; 508344a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5084064a246eSJacob Faibussowitsch if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 5085bb7acecfSBarry Smith PetscValidHeader(disc, 3); 50869566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, Nf + 1)); 508744a7f3ddSMatthew G. Knepley dm->fields[Nf].label = label; 5088bb7acecfSBarry Smith dm->fields[Nf].disc = disc; 50899566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 5090bb7acecfSBarry Smith PetscCall(PetscObjectReference((PetscObject)disc)); 5091bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, Nf, disc)); 50929566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 50933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5094af122d2aSMatthew G Knepley } 50956636e97aSMatthew G Knepley 5096e5e52638SMatthew G. Knepley /*@ 5097e0b68406SMatthew Knepley DMSetFieldAvoidTensor - Set flag to avoid defining the field on tensor cells 5098e0b68406SMatthew Knepley 509920f4b53cSBarry Smith Logically Collective 5100e0b68406SMatthew Knepley 5101e0b68406SMatthew Knepley Input Parameters: 5102bb7acecfSBarry Smith + dm - The `DM` 5103e0b68406SMatthew Knepley . f - The field index 5104bb7acecfSBarry Smith - avoidTensor - `PETSC_TRUE` to skip defining the field on tensor cells 5105e0b68406SMatthew Knepley 5106e0b68406SMatthew Knepley Level: intermediate 5107e0b68406SMatthew Knepley 51081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()` 5109e0b68406SMatthew Knepley @*/ 5110d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFieldAvoidTensor(DM dm, PetscInt f, PetscBool avoidTensor) 5111d71ae5a4SJacob Faibussowitsch { 5112e0b68406SMatthew Knepley PetscFunctionBegin; 511363a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5114e0b68406SMatthew Knepley dm->fields[f].avoidTensor = avoidTensor; 51153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5116e0b68406SMatthew Knepley } 5117e0b68406SMatthew Knepley 5118e0b68406SMatthew Knepley /*@ 5119e0b68406SMatthew Knepley DMGetFieldAvoidTensor - Get flag to avoid defining the field on tensor cells 5120e0b68406SMatthew Knepley 512120f4b53cSBarry Smith Not Collective 5122e0b68406SMatthew Knepley 5123e0b68406SMatthew Knepley Input Parameters: 5124bb7acecfSBarry Smith + dm - The `DM` 5125e0b68406SMatthew Knepley - f - The field index 5126e0b68406SMatthew Knepley 5127e0b68406SMatthew Knepley Output Parameter: 5128e0b68406SMatthew Knepley . avoidTensor - The flag to avoid defining the field on tensor cells 5129e0b68406SMatthew Knepley 5130e0b68406SMatthew Knepley Level: intermediate 5131e0b68406SMatthew Knepley 513260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`, `DMGetField()`, `DMSetFieldAvoidTensor()` 5133e0b68406SMatthew Knepley @*/ 5134d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFieldAvoidTensor(DM dm, PetscInt f, PetscBool *avoidTensor) 5135d71ae5a4SJacob Faibussowitsch { 5136e0b68406SMatthew Knepley PetscFunctionBegin; 513763a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5138e0b68406SMatthew Knepley *avoidTensor = dm->fields[f].avoidTensor; 51393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5140e0b68406SMatthew Knepley } 5141e0b68406SMatthew Knepley 5142e0b68406SMatthew Knepley /*@ 5143bb7acecfSBarry Smith DMCopyFields - Copy the discretizations for the `DM` into another `DM` 5144e5e52638SMatthew G. Knepley 514520f4b53cSBarry Smith Collective 5146e5e52638SMatthew G. Knepley 5147e5e52638SMatthew G. Knepley Input Parameter: 5148bb7acecfSBarry Smith . dm - The `DM` 5149e5e52638SMatthew G. Knepley 5150e5e52638SMatthew G. Knepley Output Parameter: 5151bb7acecfSBarry Smith . newdm - The `DM` 5152e5e52638SMatthew G. Knepley 5153e5e52638SMatthew G. Knepley Level: advanced 5154e5e52638SMatthew G. Knepley 51551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetField()`, `DMSetField()`, `DMAddField()`, `DMCopyDS()`, `DMGetDS()`, `DMGetCellDS()` 5156e5e52638SMatthew G. Knepley @*/ 5157d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyFields(DM dm, DM newdm) 5158d71ae5a4SJacob Faibussowitsch { 5159e5e52638SMatthew G. Knepley PetscInt Nf, f; 5160e5e52638SMatthew G. Knepley 5161e5e52638SMatthew G. Knepley PetscFunctionBegin; 51623ba16761SJacob Faibussowitsch if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS); 51639566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 51649566063dSJacob Faibussowitsch PetscCall(DMClearFields(newdm)); 5165e5e52638SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5166e5e52638SMatthew G. Knepley DMLabel label; 5167e5e52638SMatthew G. Knepley PetscObject field; 516834aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 5169e5e52638SMatthew G. Knepley 51709566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, &label, &field)); 51719566063dSJacob Faibussowitsch PetscCall(DMSetField(newdm, f, label, field)); 51729566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, f, &useCone, &useClosure)); 51739566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(newdm, f, useCone, useClosure)); 517434aa8a36SMatthew G. Knepley } 51753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 517634aa8a36SMatthew G. Knepley } 517734aa8a36SMatthew G. Knepley 517834aa8a36SMatthew G. Knepley /*@ 517934aa8a36SMatthew G. Knepley DMGetAdjacency - Returns the flags for determining variable influence 518034aa8a36SMatthew G. Knepley 518120f4b53cSBarry Smith Not Collective 518234aa8a36SMatthew G. Knepley 518334aa8a36SMatthew G. Knepley Input Parameters: 518420f4b53cSBarry Smith + dm - The `DM` object 518520f4b53cSBarry Smith - f - The field number, or `PETSC_DEFAULT` for the default adjacency 518634aa8a36SMatthew G. Knepley 5187d8d19677SJose E. Roman Output Parameters: 518834aa8a36SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 518934aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 519034aa8a36SMatthew G. Knepley 519134aa8a36SMatthew G. Knepley Level: developer 519234aa8a36SMatthew G. Knepley 519320f4b53cSBarry Smith Notes: 519420f4b53cSBarry Smith .vb 519520f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 519620f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 519720f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 519820f4b53cSBarry Smith .ve 519920f4b53cSBarry Smith Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 520020f4b53cSBarry Smith 52011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetAdjacency()`, `DMGetField()`, `DMSetField()` 520234aa8a36SMatthew G. Knepley @*/ 5203d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAdjacency(DM dm, PetscInt f, PetscBool *useCone, PetscBool *useClosure) 5204d71ae5a4SJacob Faibussowitsch { 520534aa8a36SMatthew G. Knepley PetscFunctionBegin; 520634aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 52074f572ea9SToby Isaac if (useCone) PetscAssertPointer(useCone, 3); 52084f572ea9SToby Isaac if (useClosure) PetscAssertPointer(useClosure, 4); 520934aa8a36SMatthew G. Knepley if (f < 0) { 521034aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->adjacency[0]; 521134aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->adjacency[1]; 521234aa8a36SMatthew G. Knepley } else { 521334aa8a36SMatthew G. Knepley PetscInt Nf; 521434aa8a36SMatthew G. Knepley 52159566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 52167a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 521734aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->fields[f].adjacency[0]; 521834aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->fields[f].adjacency[1]; 521934aa8a36SMatthew G. Knepley } 52203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 522134aa8a36SMatthew G. Knepley } 522234aa8a36SMatthew G. Knepley 522334aa8a36SMatthew G. Knepley /*@ 522434aa8a36SMatthew G. Knepley DMSetAdjacency - Set the flags for determining variable influence 522534aa8a36SMatthew G. Knepley 522620f4b53cSBarry Smith Not Collective 522734aa8a36SMatthew G. Knepley 522834aa8a36SMatthew G. Knepley Input Parameters: 522920f4b53cSBarry Smith + dm - The `DM` object 523034aa8a36SMatthew G. Knepley . f - The field number 523134aa8a36SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 523234aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 523334aa8a36SMatthew G. Knepley 523434aa8a36SMatthew G. Knepley Level: developer 523534aa8a36SMatthew G. Knepley 523620f4b53cSBarry Smith Notes: 523720f4b53cSBarry Smith .vb 523820f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 523920f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 524020f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 524120f4b53cSBarry Smith .ve 524220f4b53cSBarry Smith Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 524320f4b53cSBarry Smith 52441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetAdjacency()`, `DMGetField()`, `DMSetField()` 524534aa8a36SMatthew G. Knepley @*/ 5246d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAdjacency(DM dm, PetscInt f, PetscBool useCone, PetscBool useClosure) 5247d71ae5a4SJacob Faibussowitsch { 524834aa8a36SMatthew G. Knepley PetscFunctionBegin; 524934aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 525034aa8a36SMatthew G. Knepley if (f < 0) { 525134aa8a36SMatthew G. Knepley dm->adjacency[0] = useCone; 525234aa8a36SMatthew G. Knepley dm->adjacency[1] = useClosure; 525334aa8a36SMatthew G. Knepley } else { 525434aa8a36SMatthew G. Knepley PetscInt Nf; 525534aa8a36SMatthew G. Knepley 52569566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 52577a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 525834aa8a36SMatthew G. Knepley dm->fields[f].adjacency[0] = useCone; 525934aa8a36SMatthew G. Knepley dm->fields[f].adjacency[1] = useClosure; 5260e5e52638SMatthew G. Knepley } 52613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5262e5e52638SMatthew G. Knepley } 5263e5e52638SMatthew G. Knepley 5264b0441da4SMatthew G. Knepley /*@ 5265b0441da4SMatthew G. Knepley DMGetBasicAdjacency - Returns the flags for determining variable influence, using either the default or field 0 if it is defined 5266b0441da4SMatthew G. Knepley 5267b0441da4SMatthew G. Knepley Not collective 5268b0441da4SMatthew G. Knepley 5269f899ff85SJose E. Roman Input Parameter: 527020f4b53cSBarry Smith . dm - The `DM` object 5271b0441da4SMatthew G. Knepley 5272d8d19677SJose E. Roman Output Parameters: 5273b0441da4SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 5274b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5275b0441da4SMatthew G. Knepley 5276b0441da4SMatthew G. Knepley Level: developer 5277b0441da4SMatthew G. Knepley 527820f4b53cSBarry Smith Notes: 527920f4b53cSBarry Smith .vb 528020f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 528120f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 528220f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 528320f4b53cSBarry Smith .ve 528420f4b53cSBarry Smith 52851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5286b0441da4SMatthew G. Knepley @*/ 5287d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasicAdjacency(DM dm, PetscBool *useCone, PetscBool *useClosure) 5288d71ae5a4SJacob Faibussowitsch { 5289b0441da4SMatthew G. Knepley PetscInt Nf; 5290b0441da4SMatthew G. Knepley 5291b0441da4SMatthew G. Knepley PetscFunctionBegin; 5292b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 52934f572ea9SToby Isaac if (useCone) PetscAssertPointer(useCone, 2); 52944f572ea9SToby Isaac if (useClosure) PetscAssertPointer(useClosure, 3); 52959566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5296b0441da4SMatthew G. Knepley if (!Nf) { 52979566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5298b0441da4SMatthew G. Knepley } else { 52999566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, 0, useCone, useClosure)); 5300b0441da4SMatthew G. Knepley } 53013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5302b0441da4SMatthew G. Knepley } 5303b0441da4SMatthew G. Knepley 5304b0441da4SMatthew G. Knepley /*@ 5305b0441da4SMatthew G. Knepley DMSetBasicAdjacency - Set the flags for determining variable influence, using either the default or field 0 if it is defined 5306b0441da4SMatthew G. Knepley 530720f4b53cSBarry Smith Not Collective 5308b0441da4SMatthew G. Knepley 5309b0441da4SMatthew G. Knepley Input Parameters: 531020f4b53cSBarry Smith + dm - The `DM` object 5311b0441da4SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 5312b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5313b0441da4SMatthew G. Knepley 5314b0441da4SMatthew G. Knepley Level: developer 5315b0441da4SMatthew G. Knepley 531620f4b53cSBarry Smith Notes: 531720f4b53cSBarry Smith .vb 531820f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 531920f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 532020f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 532120f4b53cSBarry Smith .ve 532220f4b53cSBarry Smith 53231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5324b0441da4SMatthew G. Knepley @*/ 5325d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetBasicAdjacency(DM dm, PetscBool useCone, PetscBool useClosure) 5326d71ae5a4SJacob Faibussowitsch { 5327b0441da4SMatthew G. Knepley PetscInt Nf; 5328b0441da4SMatthew G. Knepley 5329b0441da4SMatthew G. Knepley PetscFunctionBegin; 5330b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 53319566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5332b0441da4SMatthew G. Knepley if (!Nf) { 53339566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5334b0441da4SMatthew G. Knepley } else { 53359566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, 0, useCone, useClosure)); 5336e5e52638SMatthew G. Knepley } 53373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5338e5e52638SMatthew G. Knepley } 5339e5e52638SMatthew G. Knepley 5340d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompleteBCLabels_Internal(DM dm) 5341d71ae5a4SJacob Faibussowitsch { 5342799db056SMatthew G. Knepley DM plex; 5343799db056SMatthew G. Knepley DMLabel *labels, *glabels; 5344799db056SMatthew G. Knepley const char **names; 5345799db056SMatthew G. Knepley char *sendNames, *recvNames; 5346799db056SMatthew G. Knepley PetscInt Nds, s, maxLabels = 0, maxLen = 0, gmaxLen, Nl = 0, gNl, l, gl, m; 5347799db056SMatthew G. Knepley size_t len; 5348799db056SMatthew G. Knepley MPI_Comm comm; 5349799db056SMatthew G. Knepley PetscMPIInt rank, size, p, *counts, *displs; 5350783e2ec8SMatthew G. Knepley 5351783e2ec8SMatthew G. Knepley PetscFunctionBegin; 5352799db056SMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 5353799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(comm, &size)); 5354799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5355799db056SMatthew G. Knepley PetscCall(DMGetNumDS(dm, &Nds)); 5356799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5357799db056SMatthew G. Knepley PetscDS dsBC; 5358799db056SMatthew G. Knepley PetscInt numBd; 5359799db056SMatthew G. Knepley 536007218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL)); 5361799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5362799db056SMatthew G. Knepley maxLabels += numBd; 5363799db056SMatthew G. Knepley } 5364799db056SMatthew G. Knepley PetscCall(PetscCalloc1(maxLabels, &labels)); 5365799db056SMatthew G. Knepley /* Get list of labels to be completed */ 5366799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5367799db056SMatthew G. Knepley PetscDS dsBC; 5368799db056SMatthew G. Knepley PetscInt numBd, bd; 5369799db056SMatthew G. Knepley 537007218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL)); 5371799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5372799db056SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 5373799db056SMatthew G. Knepley DMLabel label; 5374799db056SMatthew G. Knepley PetscInt field; 5375799db056SMatthew G. Knepley PetscObject obj; 5376799db056SMatthew G. Knepley PetscClassId id; 5377799db056SMatthew G. Knepley 5378799db056SMatthew G. Knepley PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 53799566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 53809566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 5381799db056SMatthew G. Knepley if (!(id == PETSCFE_CLASSID) || !label) continue; 53829371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 53839371c9d4SSatish Balay if (labels[l] == label) break; 5384799db056SMatthew G. Knepley if (l == Nl) labels[Nl++] = label; 5385783e2ec8SMatthew G. Knepley } 5386799db056SMatthew G. Knepley } 5387799db056SMatthew G. Knepley /* Get label names */ 5388799db056SMatthew G. Knepley PetscCall(PetscMalloc1(Nl, &names)); 5389799db056SMatthew G. Knepley for (l = 0; l < Nl; ++l) PetscCall(PetscObjectGetName((PetscObject)labels[l], &names[l])); 53909371c9d4SSatish Balay for (l = 0; l < Nl; ++l) { 53919371c9d4SSatish Balay PetscCall(PetscStrlen(names[l], &len)); 53929371c9d4SSatish Balay maxLen = PetscMax(maxLen, (PetscInt)len + 2); 53939371c9d4SSatish Balay } 5394799db056SMatthew G. Knepley PetscCall(PetscFree(labels)); 5395712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(&maxLen, &gmaxLen, 1, MPIU_INT, MPI_MAX, comm)); 5396799db056SMatthew G. Knepley PetscCall(PetscCalloc1(Nl * gmaxLen, &sendNames)); 5397c6a7a370SJeremy L Thompson for (l = 0; l < Nl; ++l) PetscCall(PetscStrncpy(&sendNames[gmaxLen * l], names[l], gmaxLen)); 5398799db056SMatthew G. Knepley PetscCall(PetscFree(names)); 5399799db056SMatthew G. Knepley /* Put all names on all processes */ 5400799db056SMatthew G. Knepley PetscCall(PetscCalloc2(size, &counts, size + 1, &displs)); 5401799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgather(&Nl, 1, MPI_INT, counts, 1, MPI_INT, comm)); 5402799db056SMatthew G. Knepley for (p = 0; p < size; ++p) displs[p + 1] = displs[p] + counts[p]; 5403799db056SMatthew G. Knepley gNl = displs[size]; 54049371c9d4SSatish Balay for (p = 0; p < size; ++p) { 54059371c9d4SSatish Balay counts[p] *= gmaxLen; 54069371c9d4SSatish Balay displs[p] *= gmaxLen; 54079371c9d4SSatish Balay } 5408799db056SMatthew G. Knepley PetscCall(PetscCalloc2(gNl * gmaxLen, &recvNames, gNl, &glabels)); 5409799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgatherv(sendNames, counts[rank], MPI_CHAR, recvNames, counts, displs, MPI_CHAR, comm)); 5410799db056SMatthew G. Knepley PetscCall(PetscFree2(counts, displs)); 5411799db056SMatthew G. Knepley PetscCall(PetscFree(sendNames)); 5412799db056SMatthew G. Knepley for (l = 0, gl = 0; l < gNl; ++l) { 5413799db056SMatthew G. Knepley PetscCall(DMGetLabel(dm, &recvNames[l * gmaxLen], &glabels[gl])); 5414799db056SMatthew G. Knepley PetscCheck(glabels[gl], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Label %s missing on rank %d", &recvNames[l * gmaxLen], rank); 54159371c9d4SSatish Balay for (m = 0; m < gl; ++m) 54169371c9d4SSatish Balay if (glabels[m] == glabels[gl]) continue; 54179566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 5418799db056SMatthew G. Knepley PetscCall(DMPlexLabelComplete(plex, glabels[gl])); 54199566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 5420799db056SMatthew G. Knepley ++gl; 5421783e2ec8SMatthew G. Knepley } 5422799db056SMatthew G. Knepley PetscCall(PetscFree2(recvNames, glabels)); 54233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5424783e2ec8SMatthew G. Knepley } 5425783e2ec8SMatthew G. Knepley 5426d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDSEnlarge_Static(DM dm, PetscInt NdsNew) 5427d71ae5a4SJacob Faibussowitsch { 5428e5e52638SMatthew G. Knepley DMSpace *tmpd; 5429e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5430e5e52638SMatthew G. Knepley 5431e5e52638SMatthew G. Knepley PetscFunctionBegin; 54323ba16761SJacob Faibussowitsch if (Nds >= NdsNew) PetscFunctionReturn(PETSC_SUCCESS); 54339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NdsNew, &tmpd)); 5434e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) tmpd[s] = dm->probs[s]; 54359371c9d4SSatish Balay for (s = Nds; s < NdsNew; ++s) { 54369371c9d4SSatish Balay tmpd[s].ds = NULL; 54379371c9d4SSatish Balay tmpd[s].label = NULL; 54389371c9d4SSatish Balay tmpd[s].fields = NULL; 54399371c9d4SSatish Balay } 54409566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5441e5e52638SMatthew G. Knepley dm->Nds = NdsNew; 5442e5e52638SMatthew G. Knepley dm->probs = tmpd; 54433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5444e5e52638SMatthew G. Knepley } 5445e5e52638SMatthew G. Knepley 5446e5e52638SMatthew G. Knepley /*@ 544720f4b53cSBarry Smith DMGetNumDS - Get the number of discrete systems in the `DM` 5448e5e52638SMatthew G. Knepley 544920f4b53cSBarry Smith Not Collective 5450e5e52638SMatthew G. Knepley 5451e5e52638SMatthew G. Knepley Input Parameter: 545220f4b53cSBarry Smith . dm - The `DM` 5453e5e52638SMatthew G. Knepley 5454e5e52638SMatthew G. Knepley Output Parameter: 545520f4b53cSBarry Smith . Nds - The number of `PetscDS` objects 5456e5e52638SMatthew G. Knepley 5457e5e52638SMatthew G. Knepley Level: intermediate 5458e5e52638SMatthew G. Knepley 54591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMGetCellDS()` 5460e5e52638SMatthew G. Knepley @*/ 5461d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumDS(DM dm, PetscInt *Nds) 5462d71ae5a4SJacob Faibussowitsch { 5463e5e52638SMatthew G. Knepley PetscFunctionBegin; 5464e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 54654f572ea9SToby Isaac PetscAssertPointer(Nds, 2); 5466e5e52638SMatthew G. Knepley *Nds = dm->Nds; 54673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5468e5e52638SMatthew G. Knepley } 5469e5e52638SMatthew G. Knepley 5470e5e52638SMatthew G. Knepley /*@ 547120f4b53cSBarry Smith DMClearDS - Remove all discrete systems from the `DM` 5472e5e52638SMatthew G. Knepley 547320f4b53cSBarry Smith Logically Collective 5474e5e52638SMatthew G. Knepley 5475e5e52638SMatthew G. Knepley Input Parameter: 547620f4b53cSBarry Smith . dm - The `DM` 5477e5e52638SMatthew G. Knepley 5478e5e52638SMatthew G. Knepley Level: intermediate 5479e5e52638SMatthew G. Knepley 54801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumDS()`, `DMGetDS()`, `DMSetField()` 5481e5e52638SMatthew G. Knepley @*/ 5482d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearDS(DM dm) 5483d71ae5a4SJacob Faibussowitsch { 5484e5e52638SMatthew G. Knepley PetscInt s; 5485e5e52638SMatthew G. Knepley 5486e5e52638SMatthew G. Knepley PetscFunctionBegin; 5487e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5488e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 54899566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 549007218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[s].dsIn)); 54919566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[s].label)); 54929566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[s].fields)); 5493e5e52638SMatthew G. Knepley } 54949566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5495e5e52638SMatthew G. Knepley dm->probs = NULL; 5496e5e52638SMatthew G. Knepley dm->Nds = 0; 54973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5498e5e52638SMatthew G. Knepley } 5499e5e52638SMatthew G. Knepley 5500e5e52638SMatthew G. Knepley /*@ 550120f4b53cSBarry Smith DMGetDS - Get the default `PetscDS` 5502e5e52638SMatthew G. Knepley 550320f4b53cSBarry Smith Not Collective 5504e5e52638SMatthew G. Knepley 5505e5e52638SMatthew G. Knepley Input Parameter: 550620f4b53cSBarry Smith . dm - The `DM` 5507e5e52638SMatthew G. Knepley 5508e5e52638SMatthew G. Knepley Output Parameter: 550907218a29SMatthew G. Knepley . ds - The default `PetscDS` 5510e5e52638SMatthew G. Knepley 5511e5e52638SMatthew G. Knepley Level: intermediate 5512e5e52638SMatthew G. Knepley 55131cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCellDS()`, `DMGetRegionDS()` 5514e5e52638SMatthew G. Knepley @*/ 551507218a29SMatthew G. Knepley PetscErrorCode DMGetDS(DM dm, PetscDS *ds) 5516d71ae5a4SJacob Faibussowitsch { 5517e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5518e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 55194f572ea9SToby Isaac PetscAssertPointer(ds, 2); 552007218a29SMatthew G. Knepley PetscCheck(dm->Nds > 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Need to call DMCreateDS() before calling DMGetDS()"); 552107218a29SMatthew G. Knepley *ds = dm->probs[0].ds; 55223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5523e5e52638SMatthew G. Knepley } 5524e5e52638SMatthew G. Knepley 5525e5e52638SMatthew G. Knepley /*@ 552620f4b53cSBarry Smith DMGetCellDS - Get the `PetscDS` defined on a given cell 5527e5e52638SMatthew G. Knepley 552820f4b53cSBarry Smith Not Collective 5529e5e52638SMatthew G. Knepley 5530e5e52638SMatthew G. Knepley Input Parameters: 553120f4b53cSBarry Smith + dm - The `DM` 553220f4b53cSBarry Smith - point - Cell for the `PetscDS` 5533e5e52638SMatthew G. Knepley 553407218a29SMatthew G. Knepley Output Parameters: 553507218a29SMatthew G. Knepley + ds - The `PetscDS` defined on the given cell 553607218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or NULL if the same ds 5537e5e52638SMatthew G. Knepley 5538e5e52638SMatthew G. Knepley Level: developer 5539e5e52638SMatthew G. Knepley 55401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMSetRegionDS()` 5541e5e52638SMatthew G. Knepley @*/ 554207218a29SMatthew G. Knepley PetscErrorCode DMGetCellDS(DM dm, PetscInt point, PetscDS *ds, PetscDS *dsIn) 5543d71ae5a4SJacob Faibussowitsch { 554407218a29SMatthew G. Knepley PetscDS dsDef = NULL; 5545e5e52638SMatthew G. Knepley PetscInt s; 5546e5e52638SMatthew G. Knepley 5547e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5548e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 55494f572ea9SToby Isaac if (ds) PetscAssertPointer(ds, 3); 55504f572ea9SToby Isaac if (dsIn) PetscAssertPointer(dsIn, 4); 555163a3b9bcSJacob Faibussowitsch PetscCheck(point >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Mesh point cannot be negative: %" PetscInt_FMT, point); 555207218a29SMatthew G. Knepley if (ds) *ds = NULL; 555307218a29SMatthew G. Knepley if (dsIn) *dsIn = NULL; 5554e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 5555e5e52638SMatthew G. Knepley PetscInt val; 5556e5e52638SMatthew G. Knepley 55579371c9d4SSatish Balay if (!dm->probs[s].label) { 555807218a29SMatthew G. Knepley dsDef = dm->probs[s].ds; 55599371c9d4SSatish Balay } else { 55609566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(dm->probs[s].label, point, &val)); 55619371c9d4SSatish Balay if (val >= 0) { 556207218a29SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 556307218a29SMatthew G. Knepley if (dsIn) *dsIn = dm->probs[s].dsIn; 55649371c9d4SSatish Balay break; 55659371c9d4SSatish Balay } 5566e5e52638SMatthew G. Knepley } 5567e5e52638SMatthew G. Knepley } 556807218a29SMatthew G. Knepley if (ds && !*ds) *ds = dsDef; 55693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5570e5e52638SMatthew G. Knepley } 5571e5e52638SMatthew G. Knepley 5572e5e52638SMatthew G. Knepley /*@ 557320f4b53cSBarry Smith DMGetRegionDS - Get the `PetscDS` for a given mesh region, defined by a `DMLabel` 5574e5e52638SMatthew G. Knepley 557520f4b53cSBarry Smith Not Collective 5576e5e52638SMatthew G. Knepley 5577e5e52638SMatthew G. Knepley Input Parameters: 557820f4b53cSBarry Smith + dm - The `DM` 557920f4b53cSBarry Smith - label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh 5580e5e52638SMatthew G. Knepley 5581b3cf3223SMatthew G. Knepley Output Parameters: 558220f4b53cSBarry Smith + fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` 558307218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` 558407218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input in the given region, or `NULL` 5585e5e52638SMatthew G. Knepley 5586e5e52638SMatthew G. Knepley Level: advanced 5587e5e52638SMatthew G. Knepley 558820f4b53cSBarry Smith Note: 558920f4b53cSBarry Smith If a non-`NULL` label is given, but there is no `PetscDS` on that specific label, 559020f4b53cSBarry Smith the `PetscDS` for the full domain (if present) is returned. Returns with 559107218a29SMatthew G. Knepley fields = `NULL` and ds = `NULL` if there is no `PetscDS` for the full domain. 559220f4b53cSBarry Smith 55931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5594e5e52638SMatthew G. Knepley @*/ 559507218a29SMatthew G. Knepley PetscErrorCode DMGetRegionDS(DM dm, DMLabel label, IS *fields, PetscDS *ds, PetscDS *dsIn) 5596d71ae5a4SJacob Faibussowitsch { 5597e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5598e5e52638SMatthew G. Knepley 5599e5e52638SMatthew G. Knepley PetscFunctionBegin; 5600e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5601e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 56029371c9d4SSatish Balay if (fields) { 56034f572ea9SToby Isaac PetscAssertPointer(fields, 3); 56049371c9d4SSatish Balay *fields = NULL; 56059371c9d4SSatish Balay } 56069371c9d4SSatish Balay if (ds) { 56074f572ea9SToby Isaac PetscAssertPointer(ds, 4); 56089371c9d4SSatish Balay *ds = NULL; 56099371c9d4SSatish Balay } 561007218a29SMatthew G. Knepley if (dsIn) { 56114f572ea9SToby Isaac PetscAssertPointer(dsIn, 5); 561207218a29SMatthew G. Knepley *dsIn = NULL; 561307218a29SMatthew G. Knepley } 5614e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5615154ca461SJed Brown if (dm->probs[s].label == label || !dm->probs[s].label) { 5616b3cf3223SMatthew G. Knepley if (fields) *fields = dm->probs[s].fields; 5617b3cf3223SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 561807218a29SMatthew G. Knepley if (dsIn) *dsIn = dm->probs[s].dsIn; 56193ba16761SJacob Faibussowitsch if (dm->probs[s].label) PetscFunctionReturn(PETSC_SUCCESS); 5620b3cf3223SMatthew G. Knepley } 5621e5e52638SMatthew G. Knepley } 56223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5623e5e52638SMatthew G. Knepley } 5624e5e52638SMatthew G. Knepley 5625e5e52638SMatthew G. Knepley /*@ 5626bb7acecfSBarry Smith DMSetRegionDS - Set the `PetscDS` for a given mesh region, defined by a `DMLabel` 5627083401c6SMatthew G. Knepley 562820f4b53cSBarry Smith Collective 5629083401c6SMatthew G. Knepley 5630083401c6SMatthew G. Knepley Input Parameters: 5631bb7acecfSBarry Smith + dm - The `DM` 563220f4b53cSBarry Smith . label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh 563307218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` for all fields 563407218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region 563507218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS` 5636083401c6SMatthew G. Knepley 563720f4b53cSBarry Smith Level: advanced 563820f4b53cSBarry Smith 5639bb7acecfSBarry Smith Note: 5640bb7acecfSBarry Smith If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`. If the `PetscDS` is replaced, 5641083401c6SMatthew G. Knepley the fields argument is ignored. 5642083401c6SMatthew G. Knepley 56431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionNumDS()`, `DMGetDS()`, `DMGetCellDS()` 5644083401c6SMatthew G. Knepley @*/ 564507218a29SMatthew G. Knepley PetscErrorCode DMSetRegionDS(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 5646d71ae5a4SJacob Faibussowitsch { 5647083401c6SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5648083401c6SMatthew G. Knepley 5649083401c6SMatthew G. Knepley PetscFunctionBegin; 5650083401c6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5651083401c6SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 565207218a29SMatthew G. Knepley if (fields) PetscValidHeaderSpecific(fields, IS_CLASSID, 3); 5653064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 4); 565407218a29SMatthew G. Knepley if (dsIn) PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 5); 5655083401c6SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5656083401c6SMatthew G. Knepley if (dm->probs[s].label == label) { 56579566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 565807218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[s].dsIn)); 5659083401c6SMatthew G. Knepley dm->probs[s].ds = ds; 566007218a29SMatthew G. Knepley dm->probs[s].dsIn = dsIn; 56613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5662083401c6SMatthew G. Knepley } 5663083401c6SMatthew G. Knepley } 56649566063dSJacob Faibussowitsch PetscCall(DMDSEnlarge_Static(dm, Nds + 1)); 56659566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 56669566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 56679566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 566807218a29SMatthew G. Knepley PetscCall(PetscObjectReference((PetscObject)dsIn)); 5669083401c6SMatthew G. Knepley if (!label) { 5670083401c6SMatthew G. Knepley /* Put the NULL label at the front, so it is returned as the default */ 5671083401c6SMatthew G. Knepley for (s = Nds - 1; s >= 0; --s) dm->probs[s + 1] = dm->probs[s]; 5672083401c6SMatthew G. Knepley Nds = 0; 5673083401c6SMatthew G. Knepley } 5674083401c6SMatthew G. Knepley dm->probs[Nds].label = label; 5675083401c6SMatthew G. Knepley dm->probs[Nds].fields = fields; 5676083401c6SMatthew G. Knepley dm->probs[Nds].ds = ds; 567707218a29SMatthew G. Knepley dm->probs[Nds].dsIn = dsIn; 56783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5679083401c6SMatthew G. Knepley } 5680083401c6SMatthew G. Knepley 5681083401c6SMatthew G. Knepley /*@ 568220f4b53cSBarry Smith DMGetRegionNumDS - Get the `PetscDS` for a given mesh region, defined by the region number 5683e5e52638SMatthew G. Knepley 568420f4b53cSBarry Smith Not Collective 5685e5e52638SMatthew G. Knepley 5686e5e52638SMatthew G. Knepley Input Parameters: 568720f4b53cSBarry Smith + dm - The `DM` 5688e5e52638SMatthew G. Knepley - num - The region number, in [0, Nds) 5689e5e52638SMatthew G. Knepley 5690e5e52638SMatthew G. Knepley Output Parameters: 569120f4b53cSBarry Smith + label - The region label, or `NULL` 569220f4b53cSBarry Smith . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` 569307218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` 569407218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input in the given region, or `NULL` 5695e5e52638SMatthew G. Knepley 5696e5e52638SMatthew G. Knepley Level: advanced 5697e5e52638SMatthew G. Knepley 56981cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5699e5e52638SMatthew G. Knepley @*/ 570007218a29SMatthew G. Knepley PetscErrorCode DMGetRegionNumDS(DM dm, PetscInt num, DMLabel *label, IS *fields, PetscDS *ds, PetscDS *dsIn) 5701d71ae5a4SJacob Faibussowitsch { 5702e5e52638SMatthew G. Knepley PetscInt Nds; 5703e5e52638SMatthew G. Knepley 5704e5e52638SMatthew G. Knepley PetscFunctionBegin; 5705e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 57069566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 570763a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 5708e5e52638SMatthew G. Knepley if (label) { 57094f572ea9SToby Isaac PetscAssertPointer(label, 3); 5710e5e52638SMatthew G. Knepley *label = dm->probs[num].label; 5711e5e52638SMatthew G. Knepley } 5712b3cf3223SMatthew G. Knepley if (fields) { 57134f572ea9SToby Isaac PetscAssertPointer(fields, 4); 5714b3cf3223SMatthew G. Knepley *fields = dm->probs[num].fields; 5715b3cf3223SMatthew G. Knepley } 5716e5e52638SMatthew G. Knepley if (ds) { 57174f572ea9SToby Isaac PetscAssertPointer(ds, 5); 5718e5e52638SMatthew G. Knepley *ds = dm->probs[num].ds; 5719e5e52638SMatthew G. Knepley } 572007218a29SMatthew G. Knepley if (dsIn) { 57214f572ea9SToby Isaac PetscAssertPointer(dsIn, 6); 572207218a29SMatthew G. Knepley *dsIn = dm->probs[num].dsIn; 572307218a29SMatthew G. Knepley } 57243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5725e5e52638SMatthew G. Knepley } 5726e5e52638SMatthew G. Knepley 5727e5e52638SMatthew G. Knepley /*@ 572820f4b53cSBarry Smith DMSetRegionNumDS - Set the `PetscDS` for a given mesh region, defined by the region number 5729e5e52638SMatthew G. Knepley 573020f4b53cSBarry Smith Not Collective 5731e5e52638SMatthew G. Knepley 5732e5e52638SMatthew G. Knepley Input Parameters: 573320f4b53cSBarry Smith + dm - The `DM` 5734083401c6SMatthew G. Knepley . num - The region number, in [0, Nds) 573520f4b53cSBarry Smith . label - The region label, or `NULL` 573607218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` to prevent setting 573707218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` to prevent setting 573807218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS` 5739e5e52638SMatthew G. Knepley 5740e5e52638SMatthew G. Knepley Level: advanced 5741e5e52638SMatthew G. Knepley 57421cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5743e5e52638SMatthew G. Knepley @*/ 574407218a29SMatthew G. Knepley PetscErrorCode DMSetRegionNumDS(DM dm, PetscInt num, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 5745d71ae5a4SJacob Faibussowitsch { 5746083401c6SMatthew G. Knepley PetscInt Nds; 5747e5e52638SMatthew G. Knepley 5748e5e52638SMatthew G. Knepley PetscFunctionBegin; 5749e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5750ad540459SPierre Jolivet if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 57519566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 575263a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 57539566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 57549566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[num].label)); 5755083401c6SMatthew G. Knepley dm->probs[num].label = label; 5756083401c6SMatthew G. Knepley if (fields) { 5757083401c6SMatthew G. Knepley PetscValidHeaderSpecific(fields, IS_CLASSID, 4); 57589566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 57599566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[num].fields)); 5760083401c6SMatthew G. Knepley dm->probs[num].fields = fields; 5761e5e52638SMatthew G. Knepley } 5762083401c6SMatthew G. Knepley if (ds) { 5763083401c6SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 5); 57649566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 57659566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[num].ds)); 5766083401c6SMatthew G. Knepley dm->probs[num].ds = ds; 5767083401c6SMatthew G. Knepley } 576807218a29SMatthew G. Knepley if (dsIn) { 576907218a29SMatthew G. Knepley PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 6); 577007218a29SMatthew G. Knepley PetscCall(PetscObjectReference((PetscObject)dsIn)); 577107218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[num].dsIn)); 577207218a29SMatthew G. Knepley dm->probs[num].dsIn = dsIn; 577307218a29SMatthew G. Knepley } 57743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5775e5e52638SMatthew G. Knepley } 5776e5e52638SMatthew G. Knepley 5777e5e52638SMatthew G. Knepley /*@ 577820f4b53cSBarry Smith DMFindRegionNum - Find the region number for a given `PetscDS`, or -1 if it is not found. 57791d3af9e0SMatthew G. Knepley 578020f4b53cSBarry Smith Not Collective 57811d3af9e0SMatthew G. Knepley 57821d3af9e0SMatthew G. Knepley Input Parameters: 578320f4b53cSBarry Smith + dm - The `DM` 578420f4b53cSBarry Smith - ds - The `PetscDS` defined on the given region 57851d3af9e0SMatthew G. Knepley 57861d3af9e0SMatthew G. Knepley Output Parameter: 57871d3af9e0SMatthew G. Knepley . num - The region number, in [0, Nds), or -1 if not found 57881d3af9e0SMatthew G. Knepley 57891d3af9e0SMatthew G. Knepley Level: advanced 57901d3af9e0SMatthew G. Knepley 57911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 57921d3af9e0SMatthew G. Knepley @*/ 5793d71ae5a4SJacob Faibussowitsch PetscErrorCode DMFindRegionNum(DM dm, PetscDS ds, PetscInt *num) 5794d71ae5a4SJacob Faibussowitsch { 57951d3af9e0SMatthew G. Knepley PetscInt Nds, n; 57961d3af9e0SMatthew G. Knepley 57971d3af9e0SMatthew G. Knepley PetscFunctionBegin; 57981d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 57991d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 2); 58004f572ea9SToby Isaac PetscAssertPointer(num, 3); 58019566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 58029371c9d4SSatish Balay for (n = 0; n < Nds; ++n) 58039371c9d4SSatish Balay if (ds == dm->probs[n].ds) break; 58041d3af9e0SMatthew G. Knepley if (n >= Nds) *num = -1; 58051d3af9e0SMatthew G. Knepley else *num = n; 58063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58071d3af9e0SMatthew G. Knepley } 58081d3af9e0SMatthew G. Knepley 58092df84da0SMatthew G. Knepley /*@C 5810bb7acecfSBarry Smith DMCreateFEDefault - Create a `PetscFE` based on the celltype for the mesh 58112df84da0SMatthew G. Knepley 581220f4b53cSBarry Smith Not Collective 58132df84da0SMatthew G. Knepley 5814f1a722f8SMatthew G. Knepley Input Parameters: 5815bb7acecfSBarry Smith + dm - The `DM` 58162df84da0SMatthew G. Knepley . Nc - The number of components for the field 581720f4b53cSBarry Smith . prefix - The options prefix for the output `PetscFE`, or `NULL` 5818bb7acecfSBarry Smith - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree 58192df84da0SMatthew G. Knepley 58202df84da0SMatthew G. Knepley Output Parameter: 5821bb7acecfSBarry Smith . fem - The `PetscFE` 58222df84da0SMatthew G. Knepley 582320f4b53cSBarry Smith Level: intermediate 582420f4b53cSBarry Smith 5825bb7acecfSBarry Smith Note: 5826bb7acecfSBarry Smith This is a convenience method that just calls `PetscFECreateByCell()` underneath. 58272df84da0SMatthew G. Knepley 58281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscFECreateByCell()`, `DMAddField()`, `DMCreateDS()`, `DMGetCellDS()`, `DMGetRegionDS()` 58292df84da0SMatthew G. Knepley @*/ 5830d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFEDefault(DM dm, PetscInt Nc, const char prefix[], PetscInt qorder, PetscFE *fem) 5831d71ae5a4SJacob Faibussowitsch { 58322df84da0SMatthew G. Knepley DMPolytopeType ct; 58332df84da0SMatthew G. Knepley PetscInt dim, cStart; 58342df84da0SMatthew G. Knepley 58352df84da0SMatthew G. Knepley PetscFunctionBegin; 58362df84da0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 58372df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 2); 58384f572ea9SToby Isaac if (prefix) PetscAssertPointer(prefix, 3); 58392df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, qorder, 4); 58404f572ea9SToby Isaac PetscAssertPointer(fem, 5); 58419566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 58429566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 58439566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 58449566063dSJacob Faibussowitsch PetscCall(PetscFECreateByCell(PETSC_COMM_SELF, dim, Nc, ct, prefix, qorder, fem)); 58453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58462df84da0SMatthew G. Knepley } 58472df84da0SMatthew G. Knepley 58481d3af9e0SMatthew G. Knepley /*@ 5849bb7acecfSBarry Smith DMCreateDS - Create the discrete systems for the `DM` based upon the fields added to the `DM` 5850e5e52638SMatthew G. Knepley 585120f4b53cSBarry Smith Collective 5852e5e52638SMatthew G. Knepley 5853e5e52638SMatthew G. Knepley Input Parameter: 5854bb7acecfSBarry Smith . dm - The `DM` 5855e5e52638SMatthew G. Knepley 585620f4b53cSBarry Smith Options Database Key: 5857bb7acecfSBarry Smith . -dm_petscds_view - View all the `PetscDS` objects in this `DM` 585845480ffeSMatthew G. Knepley 585920f4b53cSBarry Smith Level: intermediate 586020f4b53cSBarry Smith 58611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetField`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 5862e5e52638SMatthew G. Knepley @*/ 5863d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDS(DM dm) 5864d71ae5a4SJacob Faibussowitsch { 5865e5e52638SMatthew G. Knepley MPI_Comm comm; 5866083401c6SMatthew G. Knepley PetscDS dsDef; 5867083401c6SMatthew G. Knepley DMLabel *labelSet; 5868f9244615SMatthew G. Knepley PetscInt dE, Nf = dm->Nf, f, s, Nl, l, Ndef, k; 5869f9244615SMatthew G. Knepley PetscBool doSetup = PETSC_TRUE, flg; 5870e5e52638SMatthew G. Knepley 5871e5e52638SMatthew G. Knepley PetscFunctionBegin; 5872e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 58733ba16761SJacob Faibussowitsch if (!dm->fields) PetscFunctionReturn(PETSC_SUCCESS); 58749566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 58759566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dE)); 5876083401c6SMatthew G. Knepley /* Determine how many regions we have */ 58779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nf, &labelSet)); 5878083401c6SMatthew G. Knepley Nl = 0; 5879083401c6SMatthew G. Knepley Ndef = 0; 5880083401c6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5881083401c6SMatthew G. Knepley DMLabel label = dm->fields[f].label; 5882083401c6SMatthew G. Knepley PetscInt l; 5883083401c6SMatthew G. Knepley 5884f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 5885f918ec44SMatthew G. Knepley /* Move CEED context to discretizations */ 5886f918ec44SMatthew G. Knepley { 5887f918ec44SMatthew G. Knepley PetscClassId id; 5888f918ec44SMatthew G. Knepley 58899566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(dm->fields[f].disc, &id)); 5890f918ec44SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 5891f918ec44SMatthew G. Knepley Ceed ceed; 5892f918ec44SMatthew G. Knepley 58939566063dSJacob Faibussowitsch PetscCall(DMGetCeed(dm, &ceed)); 58949566063dSJacob Faibussowitsch PetscCall(PetscFESetCeed((PetscFE)dm->fields[f].disc, ceed)); 5895f918ec44SMatthew G. Knepley } 5896f918ec44SMatthew G. Knepley } 5897f918ec44SMatthew G. Knepley #endif 58989371c9d4SSatish Balay if (!label) { 58999371c9d4SSatish Balay ++Ndef; 59009371c9d4SSatish Balay continue; 59019371c9d4SSatish Balay } 59029371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 59039371c9d4SSatish Balay if (label == labelSet[l]) break; 5904083401c6SMatthew G. Knepley if (l < Nl) continue; 5905083401c6SMatthew G. Knepley labelSet[Nl++] = label; 5906083401c6SMatthew G. Knepley } 5907083401c6SMatthew G. Knepley /* Create default DS if there are no labels to intersect with */ 590807218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL)); 5909083401c6SMatthew G. Knepley if (!dsDef && Ndef && !Nl) { 5910b3cf3223SMatthew G. Knepley IS fields; 5911b3cf3223SMatthew G. Knepley PetscInt *fld, nf; 5912b3cf3223SMatthew G. Knepley 59139371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59149371c9d4SSatish Balay if (!dm->fields[f].label) ++nf; 59157a8be351SBarry Smith PetscCheck(nf, comm, PETSC_ERR_PLIB, "All fields have labels, but we are trying to create a default DS"); 59169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 59179371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59189371c9d4SSatish Balay if (!dm->fields[f].label) fld[nf++] = f; 59199566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 59209566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 59219566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 59229566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 592388f0c812SMatthew G. Knepley 59249566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 592507218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, NULL, fields, dsDef, NULL)); 59269566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 59279566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fields)); 59282df9ee95SMatthew G. Knepley } 592907218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL)); 59309566063dSJacob Faibussowitsch if (dsDef) PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 5931083401c6SMatthew G. Knepley /* Intersect labels with default fields */ 5932083401c6SMatthew G. Knepley if (Ndef && Nl) { 59330122748bSMatthew G. Knepley DM plex; 5934083401c6SMatthew G. Knepley DMLabel cellLabel; 5935083401c6SMatthew G. Knepley IS fieldIS, allcellIS, defcellIS = NULL; 5936083401c6SMatthew G. Knepley PetscInt *fields; 5937083401c6SMatthew G. Knepley const PetscInt *cells; 5938083401c6SMatthew G. Knepley PetscInt depth, nf = 0, n, c; 59390122748bSMatthew G. Knepley 59409566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 59419566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(plex, &depth)); 59429566063dSJacob Faibussowitsch PetscCall(DMGetStratumIS(plex, "dim", depth, &allcellIS)); 59439566063dSJacob Faibussowitsch if (!allcellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &allcellIS)); 59445fedec97SMatthew G. Knepley /* TODO This looks like it only works for one label */ 5945083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 5946083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 5947083401c6SMatthew G. Knepley IS pointIS; 5948083401c6SMatthew G. Knepley 59499566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 59509566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, 1, &pointIS)); 59519566063dSJacob Faibussowitsch PetscCall(ISDifference(allcellIS, pointIS, &defcellIS)); 59529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 5953083401c6SMatthew G. Knepley } 59549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&allcellIS)); 5955083401c6SMatthew G. Knepley 59569566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "defaultCells", &cellLabel)); 59579566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(defcellIS, &n)); 59589566063dSJacob Faibussowitsch PetscCall(ISGetIndices(defcellIS, &cells)); 59599566063dSJacob Faibussowitsch for (c = 0; c < n; ++c) PetscCall(DMLabelSetValue(cellLabel, cells[c], 1)); 59609566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(defcellIS, &cells)); 59619566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 59629566063dSJacob Faibussowitsch PetscCall(DMPlexLabelComplete(plex, cellLabel)); 5963083401c6SMatthew G. Knepley 59649566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ndef, &fields)); 59659371c9d4SSatish Balay for (f = 0; f < Nf; ++f) 59669371c9d4SSatish Balay if (!dm->fields[f].label) fields[nf++] = f; 59679566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fieldIS)); 59689566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fieldIS, "dm_fields_")); 59699566063dSJacob Faibussowitsch PetscCall(ISSetType(fieldIS, ISGENERAL)); 59709566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fieldIS, nf, fields, PETSC_OWN_POINTER)); 5971083401c6SMatthew G. Knepley 59729566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 597307218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, cellLabel, fieldIS, dsDef, NULL)); 59749566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 59759566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&cellLabel)); 59769566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 59779566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fieldIS)); 59789566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 5979083401c6SMatthew G. Knepley } 5980083401c6SMatthew G. Knepley /* Create label DSes 5981083401c6SMatthew G. Knepley - WE ONLY SUPPORT IDENTICAL OR DISJOINT LABELS 5982083401c6SMatthew G. Knepley */ 5983083401c6SMatthew G. Knepley /* TODO Should check that labels are disjoint */ 5984083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 5985083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 598607218a29SMatthew G. Knepley PetscDS ds, dsIn = NULL; 5987083401c6SMatthew G. Knepley IS fields; 5988083401c6SMatthew G. Knepley PetscInt *fld, nf; 5989083401c6SMatthew G. Knepley 59909566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 59919371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59929371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) ++nf; 59939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 59949371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59959371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) fld[nf++] = f; 59969566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 59979566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 59989566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 59999566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 60009566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(ds, dE)); 6001083401c6SMatthew G. Knepley { 6002083401c6SMatthew G. Knepley DMPolytopeType ct; 6003083401c6SMatthew G. Knepley PetscInt lStart, lEnd; 60045fedec97SMatthew G. Knepley PetscBool isCohesiveLocal = PETSC_FALSE, isCohesive; 60050122748bSMatthew G. Knepley 60069566063dSJacob Faibussowitsch PetscCall(DMLabelGetBounds(label, &lStart, &lEnd)); 6007665f567fSMatthew G. Knepley if (lStart >= 0) { 60089566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, lStart, &ct)); 6009412e9a14SMatthew G. Knepley switch (ct) { 6010412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 6011412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 6012412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 6013d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_QUAD_PRISM_TENSOR: 6014d71ae5a4SJacob Faibussowitsch isCohesiveLocal = PETSC_TRUE; 6015d71ae5a4SJacob Faibussowitsch break; 6016d71ae5a4SJacob Faibussowitsch default: 6017d71ae5a4SJacob Faibussowitsch break; 6018412e9a14SMatthew G. Knepley } 6019665f567fSMatthew G. Knepley } 6020712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(&isCohesiveLocal, &isCohesive, 1, MPIU_BOOL, MPI_LOR, comm)); 602107218a29SMatthew G. Knepley if (isCohesive) { 602207218a29SMatthew G. Knepley PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsIn)); 602307218a29SMatthew G. Knepley PetscCall(PetscDSSetCoordinateDimension(dsIn, dE)); 602407218a29SMatthew G. Knepley } 60255fedec97SMatthew G. Knepley for (f = 0, nf = 0; f < Nf; ++f) { 60265fedec97SMatthew G. Knepley if (label == dm->fields[f].label || !dm->fields[f].label) { 60275fedec97SMatthew G. Knepley if (label == dm->fields[f].label) { 60289566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, nf, NULL)); 60299566063dSJacob Faibussowitsch PetscCall(PetscDSSetCohesive(ds, nf, isCohesive)); 603007218a29SMatthew G. Knepley if (dsIn) { 603107218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, nf, NULL)); 603207218a29SMatthew G. Knepley PetscCall(PetscDSSetCohesive(dsIn, nf, isCohesive)); 603307218a29SMatthew G. Knepley } 60345fedec97SMatthew G. Knepley } 60355fedec97SMatthew G. Knepley ++nf; 60365fedec97SMatthew G. Knepley } 60375fedec97SMatthew G. Knepley } 6038e5e52638SMatthew G. Knepley } 603907218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, label, fields, ds, dsIn)); 604007218a29SMatthew G. Knepley PetscCall(ISDestroy(&fields)); 60419566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 604207218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dsIn)); 6043e5e52638SMatthew G. Knepley } 60449566063dSJacob Faibussowitsch PetscCall(PetscFree(labelSet)); 6045e5e52638SMatthew G. Knepley /* Set fields in DSes */ 6046083401c6SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 6047083401c6SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 604807218a29SMatthew G. Knepley PetscDS dsIn = dm->probs[s].dsIn; 6049083401c6SMatthew G. Knepley IS fields = dm->probs[s].fields; 6050083401c6SMatthew G. Knepley const PetscInt *fld; 60515fedec97SMatthew G. Knepley PetscInt nf, dsnf; 60525fedec97SMatthew G. Knepley PetscBool isCohesive; 6053e5e52638SMatthew G. Knepley 60549566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsnf)); 60559566063dSJacob Faibussowitsch PetscCall(PetscDSIsCohesive(ds, &isCohesive)); 60569566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(fields, &nf)); 60579566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fields, &fld)); 6058083401c6SMatthew G. Knepley for (f = 0; f < nf; ++f) { 6059083401c6SMatthew G. Knepley PetscObject disc = dm->fields[fld[f]].disc; 60605fedec97SMatthew G. Knepley PetscBool isCohesiveField; 6061e5e52638SMatthew G. Knepley PetscClassId id; 6062e5e52638SMatthew G. Knepley 60635fedec97SMatthew G. Knepley /* Handle DS with no fields */ 60649566063dSJacob Faibussowitsch if (dsnf) PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField)); 60655fedec97SMatthew G. Knepley /* If this is a cohesive cell, then regular fields need the lower dimensional discretization */ 606607218a29SMatthew G. Knepley if (isCohesive) { 606707218a29SMatthew G. Knepley if (!isCohesiveField) { 606807218a29SMatthew G. Knepley PetscObject bdDisc; 606907218a29SMatthew G. Knepley 607007218a29SMatthew G. Knepley PetscCall(PetscFEGetHeightSubspace((PetscFE)disc, 1, (PetscFE *)&bdDisc)); 607107218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(ds, f, bdDisc)); 607207218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, f, disc)); 607307218a29SMatthew G. Knepley } else { 60749566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, f, disc)); 607507218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, f, disc)); 607607218a29SMatthew G. Knepley } 607707218a29SMatthew G. Knepley } else { 607807218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(ds, f, disc)); 607907218a29SMatthew G. Knepley } 6080083401c6SMatthew G. Knepley /* We allow people to have placeholder fields and construct the Section by hand */ 60819566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 6082e5e52638SMatthew G. Knepley if ((id != PETSCFE_CLASSID) && (id != PETSCFV_CLASSID)) doSetup = PETSC_FALSE; 6083e5e52638SMatthew G. Knepley } 60849566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fields, &fld)); 6085e5e52638SMatthew G. Knepley } 6086f9244615SMatthew G. Knepley /* Allow k-jet tabulation */ 60879566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)dm)->prefix, "-dm_ds_jet_degree", &k, &flg)); 6088f9244615SMatthew G. Knepley if (flg) { 60893b4aee56SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 60903b4aee56SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 609107218a29SMatthew G. Knepley PetscDS dsIn = dm->probs[s].dsIn; 60923b4aee56SMatthew G. Knepley PetscInt Nf, f; 60933b4aee56SMatthew G. Knepley 60949566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 609507218a29SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 609607218a29SMatthew G. Knepley PetscCall(PetscDSSetJetDegree(ds, f, k)); 609707218a29SMatthew G. Knepley if (dsIn) PetscCall(PetscDSSetJetDegree(dsIn, f, k)); 609807218a29SMatthew G. Knepley } 60993b4aee56SMatthew G. Knepley } 6100f9244615SMatthew G. Knepley } 6101e5e52638SMatthew G. Knepley /* Setup DSes */ 6102e5e52638SMatthew G. Knepley if (doSetup) { 610307218a29SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 6104cf1363e4SMatthew G. Knepley if (dm->setfromoptionscalled) { 6105cf1363e4SMatthew G. Knepley PetscCall(PetscDSSetFromOptions(dm->probs[s].ds)); 6106cf1363e4SMatthew G. Knepley if (dm->probs[s].dsIn) PetscCall(PetscDSSetFromOptions(dm->probs[s].dsIn)); 6107cf1363e4SMatthew G. Knepley } 610807218a29SMatthew G. Knepley PetscCall(PetscDSSetUp(dm->probs[s].ds)); 610907218a29SMatthew G. Knepley if (dm->probs[s].dsIn) PetscCall(PetscDSSetUp(dm->probs[s].dsIn)); 611007218a29SMatthew G. Knepley } 6111e5e52638SMatthew G. Knepley } 61123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6113e5e52638SMatthew G. Knepley } 6114e5e52638SMatthew G. Knepley 6115e5e52638SMatthew G. Knepley /*@ 6116d2b2dc1eSMatthew G. Knepley DMUseTensorOrder - Use a tensor product closure ordering for the default section 6117d2b2dc1eSMatthew G. Knepley 6118d2b2dc1eSMatthew G. Knepley Input Parameters: 6119d2b2dc1eSMatthew G. Knepley + dm - The DM 6120d2b2dc1eSMatthew G. Knepley - tensor - Flag for tensor order 6121d2b2dc1eSMatthew G. Knepley 6122d2b2dc1eSMatthew G. Knepley Level: developer 6123d2b2dc1eSMatthew G. Knepley 6124d2b2dc1eSMatthew G. Knepley .seealso: `DMPlexSetClosurePermutationTensor()`, `PetscSectionResetClosurePermutation()` 6125d2b2dc1eSMatthew G. Knepley @*/ 6126d2b2dc1eSMatthew G. Knepley PetscErrorCode DMUseTensorOrder(DM dm, PetscBool tensor) 6127d2b2dc1eSMatthew G. Knepley { 6128d2b2dc1eSMatthew G. Knepley PetscInt Nf; 6129d2b2dc1eSMatthew G. Knepley PetscBool reorder = PETSC_TRUE, isPlex; 6130d2b2dc1eSMatthew G. Knepley 6131d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 6132d2b2dc1eSMatthew G. Knepley PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 6133d2b2dc1eSMatthew G. Knepley PetscCall(DMGetNumFields(dm, &Nf)); 6134d2b2dc1eSMatthew G. Knepley for (PetscInt f = 0; f < Nf; ++f) { 6135d2b2dc1eSMatthew G. Knepley PetscObject obj; 6136d2b2dc1eSMatthew G. Knepley PetscClassId id; 6137d2b2dc1eSMatthew G. Knepley 6138d2b2dc1eSMatthew G. Knepley PetscCall(DMGetField(dm, f, NULL, &obj)); 6139d2b2dc1eSMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 6140d2b2dc1eSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 6141d2b2dc1eSMatthew G. Knepley PetscSpace sp; 6142d2b2dc1eSMatthew G. Knepley PetscBool tensor; 6143d2b2dc1eSMatthew G. Knepley 6144d2b2dc1eSMatthew G. Knepley PetscCall(PetscFEGetBasisSpace((PetscFE)obj, &sp)); 6145d2b2dc1eSMatthew G. Knepley PetscCall(PetscSpacePolynomialGetTensor(sp, &tensor)); 6146d2b2dc1eSMatthew G. Knepley reorder = reorder && tensor ? PETSC_TRUE : PETSC_FALSE; 6147d2b2dc1eSMatthew G. Knepley } else reorder = PETSC_FALSE; 6148d2b2dc1eSMatthew G. Knepley } 6149d2b2dc1eSMatthew G. Knepley if (tensor) { 6150d2b2dc1eSMatthew G. Knepley if (reorder && isPlex) PetscCall(DMPlexSetClosurePermutationTensor(dm, PETSC_DETERMINE, NULL)); 6151d2b2dc1eSMatthew G. Knepley } else { 6152d2b2dc1eSMatthew G. Knepley PetscSection s; 6153d2b2dc1eSMatthew G. Knepley 6154d2b2dc1eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm, &s)); 6155d2b2dc1eSMatthew G. Knepley if (s) PetscCall(PetscSectionResetClosurePermutation(s)); 6156d2b2dc1eSMatthew G. Knepley } 6157d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 6158d2b2dc1eSMatthew G. Knepley } 6159d2b2dc1eSMatthew G. Knepley 6160d2b2dc1eSMatthew G. Knepley /*@ 6161bb7acecfSBarry Smith DMComputeExactSolution - Compute the exact solution for a given `DM`, using the `PetscDS` information. 61627f96f943SMatthew G. Knepley 616320f4b53cSBarry Smith Collective 6164f2cacb80SMatthew G. Knepley 61657f96f943SMatthew G. Knepley Input Parameters: 6166bb7acecfSBarry Smith + dm - The `DM` 61677f96f943SMatthew G. Knepley - time - The time 61687f96f943SMatthew G. Knepley 61697f96f943SMatthew G. Knepley Output Parameters: 617020f4b53cSBarry Smith + u - The vector will be filled with exact solution values, or `NULL` 617120f4b53cSBarry Smith - u_t - The vector will be filled with the time derivative of exact solution values, or `NULL` 617220f4b53cSBarry Smith 617320f4b53cSBarry Smith Level: developer 61747f96f943SMatthew G. Knepley 6175bb7acecfSBarry Smith Note: 6176bb7acecfSBarry Smith The user must call `PetscDSSetExactSolution()` before using this routine 61777f96f943SMatthew G. Knepley 61781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscDSSetExactSolution()` 61797f96f943SMatthew G. Knepley @*/ 6180d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeExactSolution(DM dm, PetscReal time, Vec u, Vec u_t) 6181d71ae5a4SJacob Faibussowitsch { 61827f96f943SMatthew G. Knepley PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 61837f96f943SMatthew G. Knepley void **ectxs; 6184f60fa741SMatthew G. Knepley Vec locu, locu_t; 61857f96f943SMatthew G. Knepley PetscInt Nf, Nds, s; 61867f96f943SMatthew G. Knepley 61877f96f943SMatthew G. Knepley PetscFunctionBegin; 6188f2cacb80SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6189f60fa741SMatthew G. Knepley if (u) { 6190f60fa741SMatthew G. Knepley PetscValidHeaderSpecific(u, VEC_CLASSID, 3); 6191f60fa741SMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &locu)); 6192f60fa741SMatthew G. Knepley PetscCall(VecSet(locu, 0.)); 6193f60fa741SMatthew G. Knepley } 6194f60fa741SMatthew G. Knepley if (u_t) { 6195f60fa741SMatthew G. Knepley PetscValidHeaderSpecific(u_t, VEC_CLASSID, 4); 6196f60fa741SMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &locu_t)); 6197f60fa741SMatthew G. Knepley PetscCall(VecSet(locu_t, 0.)); 6198f60fa741SMatthew G. Knepley } 61999566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 62009566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(Nf, &exacts, Nf, &ectxs)); 62019566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 62027f96f943SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 62037f96f943SMatthew G. Knepley PetscDS ds; 62047f96f943SMatthew G. Knepley DMLabel label; 62057f96f943SMatthew G. Knepley IS fieldIS; 62067f96f943SMatthew G. Knepley const PetscInt *fields, id = 1; 62077f96f943SMatthew G. Knepley PetscInt dsNf, f; 62087f96f943SMatthew G. Knepley 620907218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 62109566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 62119566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fieldIS, &fields)); 62129566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 62139566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6214f2cacb80SMatthew G. Knepley if (u) { 6215f60fa741SMatthew G. Knepley for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolution(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]])); 6216f60fa741SMatthew G. Knepley if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu)); 6217f60fa741SMatthew G. Knepley else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu)); 62187f96f943SMatthew G. Knepley } 6219f2cacb80SMatthew G. Knepley if (u_t) { 62209566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 62219566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6222f60fa741SMatthew G. Knepley for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolutionTimeDerivative(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]])); 6223f60fa741SMatthew G. Knepley if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu_t)); 6224f60fa741SMatthew G. Knepley else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu_t)); 6225f2cacb80SMatthew G. Knepley } 62269566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fieldIS, &fields)); 6227f2cacb80SMatthew G. Knepley } 6228f2cacb80SMatthew G. Knepley if (u) { 62299566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution")); 62309566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u, "exact_")); 6231f2cacb80SMatthew G. Knepley } 6232f2cacb80SMatthew G. Knepley if (u_t) { 62339566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution Time Derivative")); 62349566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u_t, "exact_t_")); 6235f2cacb80SMatthew G. Knepley } 62369566063dSJacob Faibussowitsch PetscCall(PetscFree2(exacts, ectxs)); 6237f60fa741SMatthew G. Knepley if (u) { 6238f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, locu, INSERT_ALL_VALUES, u)); 6239f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, locu, INSERT_ALL_VALUES, u)); 6240f60fa741SMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &locu)); 6241f60fa741SMatthew G. Knepley } 6242f60fa741SMatthew G. Knepley if (u_t) { 6243f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, locu_t, INSERT_ALL_VALUES, u_t)); 6244f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, locu_t, INSERT_ALL_VALUES, u_t)); 6245f60fa741SMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &locu_t)); 6246f60fa741SMatthew G. Knepley } 62473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 62487f96f943SMatthew G. Knepley } 62497f96f943SMatthew G. Knepley 625007218a29SMatthew G. Knepley static PetscErrorCode DMTransferDS_Internal(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 6251d71ae5a4SJacob Faibussowitsch { 625207218a29SMatthew G. Knepley PetscDS dsNew, dsInNew = NULL; 625345480ffeSMatthew G. Knepley 625445480ffeSMatthew G. Knepley PetscFunctionBegin; 62559566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)ds), &dsNew)); 625607218a29SMatthew G. Knepley PetscCall(PetscDSCopy(ds, dm, dsNew)); 625707218a29SMatthew G. Knepley if (dsIn) { 625807218a29SMatthew G. Knepley PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)dsIn), &dsInNew)); 625907218a29SMatthew G. Knepley PetscCall(PetscDSCopy(dsIn, dm, dsInNew)); 626045480ffeSMatthew G. Knepley } 626107218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, label, fields, dsNew, dsInNew)); 62629566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsNew)); 626307218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dsInNew)); 62643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 626545480ffeSMatthew G. Knepley } 626645480ffeSMatthew G. Knepley 62677f96f943SMatthew G. Knepley /*@ 6268bb7acecfSBarry Smith DMCopyDS - Copy the discrete systems for the `DM` into another `DM` 6269e5e52638SMatthew G. Knepley 627020f4b53cSBarry Smith Collective 6271e5e52638SMatthew G. Knepley 6272e5e52638SMatthew G. Knepley Input Parameter: 6273bb7acecfSBarry Smith . dm - The `DM` 6274e5e52638SMatthew G. Knepley 6275e5e52638SMatthew G. Knepley Output Parameter: 6276bb7acecfSBarry Smith . newdm - The `DM` 6277e5e52638SMatthew G. Knepley 6278e5e52638SMatthew G. Knepley Level: advanced 6279e5e52638SMatthew G. Knepley 62801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 6281e5e52638SMatthew G. Knepley @*/ 6282d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDS(DM dm, DM newdm) 6283d71ae5a4SJacob Faibussowitsch { 6284e5e52638SMatthew G. Knepley PetscInt Nds, s; 6285e5e52638SMatthew G. Knepley 6286e5e52638SMatthew G. Knepley PetscFunctionBegin; 62873ba16761SJacob Faibussowitsch if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS); 62889566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 62899566063dSJacob Faibussowitsch PetscCall(DMClearDS(newdm)); 6290e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 6291e5e52638SMatthew G. Knepley DMLabel label; 6292b3cf3223SMatthew G. Knepley IS fields; 629307218a29SMatthew G. Knepley PetscDS ds, dsIn, newds; 6294783e2ec8SMatthew G. Knepley PetscInt Nbd, bd; 6295e5e52638SMatthew G. Knepley 629607218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fields, &ds, &dsIn)); 6297b8025e53SMatthew G. Knepley /* TODO: We need to change all keys from labels in the old DM to labels in the new DM */ 629807218a29SMatthew G. Knepley PetscCall(DMTransferDS_Internal(newdm, label, fields, ds, dsIn)); 6299d5b43468SJose E. Roman /* Complete new labels in the new DS */ 630007218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(newdm, label, NULL, &newds, NULL)); 63019566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(newds, &Nbd)); 6302783e2ec8SMatthew G. Knepley for (bd = 0; bd < Nbd; ++bd) { 6303b8025e53SMatthew G. Knepley PetscWeakForm wf; 630445480ffeSMatthew G. Knepley DMLabel label; 6305783e2ec8SMatthew G. Knepley PetscInt field; 6306783e2ec8SMatthew G. Knepley 63079566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(newds, bd, &wf, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 63089566063dSJacob Faibussowitsch PetscCall(PetscWeakFormReplaceLabel(wf, label)); 6309783e2ec8SMatthew G. Knepley } 6310e5e52638SMatthew G. Knepley } 6311799db056SMatthew G. Knepley PetscCall(DMCompleteBCLabels_Internal(newdm)); 63123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6313e5e52638SMatthew G. Knepley } 6314e5e52638SMatthew G. Knepley 6315e5e52638SMatthew G. Knepley /*@ 6316bb7acecfSBarry Smith DMCopyDisc - Copy the fields and discrete systems for the `DM` into another `DM` 6317e5e52638SMatthew G. Knepley 631820f4b53cSBarry Smith Collective 6319e5e52638SMatthew G. Knepley 6320e5e52638SMatthew G. Knepley Input Parameter: 6321bb7acecfSBarry Smith . dm - The `DM` 6322e5e52638SMatthew G. Knepley 6323e5e52638SMatthew G. Knepley Output Parameter: 6324bb7acecfSBarry Smith . newdm - The `DM` 6325e5e52638SMatthew G. Knepley 6326e5e52638SMatthew G. Knepley Level: advanced 6327e5e52638SMatthew G. Knepley 632873ff1848SBarry Smith Developer Note: 6329bb7acecfSBarry Smith Really ugly name, nothing in PETSc is called a `Disc` plus it is an ugly abbreviation 6330bb7acecfSBarry Smith 63311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMCopyDS()` 6332e5e52638SMatthew G. Knepley @*/ 6333d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDisc(DM dm, DM newdm) 6334d71ae5a4SJacob Faibussowitsch { 6335e5e52638SMatthew G. Knepley PetscFunctionBegin; 63369566063dSJacob Faibussowitsch PetscCall(DMCopyFields(dm, newdm)); 63379566063dSJacob Faibussowitsch PetscCall(DMCopyDS(dm, newdm)); 63383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6339e5e52638SMatthew G. Knepley } 6340e5e52638SMatthew G. Knepley 6341c73cfb54SMatthew G. Knepley /*@ 6342bb7acecfSBarry Smith DMGetDimension - Return the topological dimension of the `DM` 6343c73cfb54SMatthew G. Knepley 634420f4b53cSBarry Smith Not Collective 6345c73cfb54SMatthew G. Knepley 6346c73cfb54SMatthew G. Knepley Input Parameter: 6347bb7acecfSBarry Smith . dm - The `DM` 6348c73cfb54SMatthew G. Knepley 6349c73cfb54SMatthew G. Knepley Output Parameter: 6350c73cfb54SMatthew G. Knepley . dim - The topological dimension 6351c73cfb54SMatthew G. Knepley 6352c73cfb54SMatthew G. Knepley Level: beginner 6353c73cfb54SMatthew G. Knepley 63541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDimension()`, `DMCreate()` 6355c73cfb54SMatthew G. Knepley @*/ 6356d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimension(DM dm, PetscInt *dim) 6357d71ae5a4SJacob Faibussowitsch { 6358c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6359c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 63604f572ea9SToby Isaac PetscAssertPointer(dim, 2); 6361c73cfb54SMatthew G. Knepley *dim = dm->dim; 63623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6363c73cfb54SMatthew G. Knepley } 6364c73cfb54SMatthew G. Knepley 6365c73cfb54SMatthew G. Knepley /*@ 6366bb7acecfSBarry Smith DMSetDimension - Set the topological dimension of the `DM` 6367c73cfb54SMatthew G. Knepley 636820f4b53cSBarry Smith Collective 6369c73cfb54SMatthew G. Knepley 6370c73cfb54SMatthew G. Knepley Input Parameters: 6371bb7acecfSBarry Smith + dm - The `DM` 6372c73cfb54SMatthew G. Knepley - dim - The topological dimension 6373c73cfb54SMatthew G. Knepley 6374c73cfb54SMatthew G. Knepley Level: beginner 6375c73cfb54SMatthew G. Knepley 63761cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDimension()`, `DMCreate()` 6377c73cfb54SMatthew G. Knepley @*/ 6378d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDimension(DM dm, PetscInt dim) 6379d71ae5a4SJacob Faibussowitsch { 6380e5e52638SMatthew G. Knepley PetscDS ds; 638145480ffeSMatthew G. Knepley PetscInt Nds, n; 6382f17e8794SMatthew G. Knepley 6383c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6384c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6385c73cfb54SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, dim, 2); 6386c73cfb54SMatthew G. Knepley dm->dim = dim; 6387d17bd122SMatthew G. Knepley if (dm->dim >= 0) { 63889566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 638945480ffeSMatthew G. Knepley for (n = 0; n < Nds; ++n) { 639007218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, n, NULL, NULL, &ds, NULL)); 63919566063dSJacob Faibussowitsch if (ds->dimEmbed < 0) PetscCall(PetscDSSetCoordinateDimension(ds, dim)); 639245480ffeSMatthew G. Knepley } 6393d17bd122SMatthew G. Knepley } 63943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6395c73cfb54SMatthew G. Knepley } 6396c73cfb54SMatthew G. Knepley 6397793f3fe5SMatthew G. Knepley /*@ 6398793f3fe5SMatthew G. Knepley DMGetDimPoints - Get the half-open interval for all points of a given dimension 6399793f3fe5SMatthew G. Knepley 640020f4b53cSBarry Smith Collective 6401793f3fe5SMatthew G. Knepley 6402793f3fe5SMatthew G. Knepley Input Parameters: 6403bb7acecfSBarry Smith + dm - the `DM` 6404793f3fe5SMatthew G. Knepley - dim - the dimension 6405793f3fe5SMatthew G. Knepley 6406793f3fe5SMatthew G. Knepley Output Parameters: 6407793f3fe5SMatthew G. Knepley + pStart - The first point of the given dimension 6408aa049354SPatrick Sanan - pEnd - The first point following points of the given dimension 6409793f3fe5SMatthew G. Knepley 641020f4b53cSBarry Smith Level: intermediate 641120f4b53cSBarry Smith 6412793f3fe5SMatthew G. Knepley Note: 6413793f3fe5SMatthew G. Knepley The points are vertices in the Hasse diagram encoding the topology. This is explained in 6414a8d69d7bSBarry Smith https://arxiv.org/abs/0908.4427. If no points exist of this dimension in the storage scheme, 6415793f3fe5SMatthew G. Knepley then the interval is empty. 6416793f3fe5SMatthew G. Knepley 64171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPLEX`, `DMPlexGetDepthStratum()`, `DMPlexGetHeightStratum()` 6418793f3fe5SMatthew G. Knepley @*/ 6419d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimPoints(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd) 6420d71ae5a4SJacob Faibussowitsch { 6421793f3fe5SMatthew G. Knepley PetscInt d; 6422793f3fe5SMatthew G. Knepley 6423793f3fe5SMatthew G. Knepley PetscFunctionBegin; 6424793f3fe5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64259566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &d)); 64267a8be351SBarry Smith PetscCheck((dim >= 0) && (dim <= d), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %" PetscInt_FMT, dim); 6427dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getdimpoints, dim, pStart, pEnd); 64283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6429793f3fe5SMatthew G. Knepley } 6430793f3fe5SMatthew G. Knepley 64316636e97aSMatthew G Knepley /*@ 6432bb7acecfSBarry Smith DMGetOutputDM - Retrieve the `DM` associated with the layout for output 6433f4d763aaSMatthew G. Knepley 643420f4b53cSBarry Smith Collective 64358f700142SStefano Zampini 6436f4d763aaSMatthew G. Knepley Input Parameter: 6437bb7acecfSBarry Smith . dm - The original `DM` 6438f4d763aaSMatthew G. Knepley 6439f4d763aaSMatthew G. Knepley Output Parameter: 6440bb7acecfSBarry Smith . odm - The `DM` which provides the layout for output 6441f4d763aaSMatthew G. Knepley 6442f4d763aaSMatthew G. Knepley Level: intermediate 6443f4d763aaSMatthew G. Knepley 6444bb7acecfSBarry Smith Note: 6445bb7acecfSBarry Smith In some situations the vector obtained with `DMCreateGlobalVector()` excludes points for degrees of freedom that are associated with fixed (Dirichelet) boundary 6446bb7acecfSBarry Smith conditions since the algebraic solver does not solve for those variables. The output `DM` includes these excluded points and its global vector contains the 6447bb7acecfSBarry Smith locations for those dof so that they can be output to a file or other viewer along with the unconstrained dof. 6448bb7acecfSBarry Smith 64491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`, `DMGetGlobalSection()`, `DMCreateGlobalVector()`, `PetscSectionHasConstraints()`, `DMSetGlobalSection()` 6450f4d763aaSMatthew G. Knepley @*/ 6451d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputDM(DM dm, DM *odm) 6452d71ae5a4SJacob Faibussowitsch { 6453c26acbdeSMatthew G. Knepley PetscSection section; 6454eb9d3e4dSMatthew G. Knepley IS perm; 6455eb9d3e4dSMatthew G. Knepley PetscBool hasConstraints, newDM, gnewDM; 645614f150ffSMatthew G. Knepley 645714f150ffSMatthew G. Knepley PetscFunctionBegin; 645814f150ffSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64594f572ea9SToby Isaac PetscAssertPointer(odm, 2); 64609566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 64619566063dSJacob Faibussowitsch PetscCall(PetscSectionHasConstraints(section, &hasConstraints)); 6462eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionGetPermutation(section, &perm)); 6463eb9d3e4dSMatthew G. Knepley newDM = hasConstraints || perm ? PETSC_TRUE : PETSC_FALSE; 6464eb9d3e4dSMatthew G. Knepley PetscCall(MPIU_Allreduce(&newDM, &gnewDM, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm))); 6465eb9d3e4dSMatthew G. Knepley if (!gnewDM) { 6466c26acbdeSMatthew G. Knepley *odm = dm; 64673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6468c26acbdeSMatthew G. Knepley } 646914f150ffSMatthew G. Knepley if (!dm->dmBC) { 6470c26acbdeSMatthew G. Knepley PetscSection newSection, gsection; 647114f150ffSMatthew G. Knepley PetscSF sf; 6472eb9d3e4dSMatthew G. Knepley PetscBool usePerm = dm->ignorePermOutput ? PETSC_FALSE : PETSC_TRUE; 647314f150ffSMatthew G. Knepley 64749566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->dmBC)); 64759566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, dm->dmBC)); 64769566063dSJacob Faibussowitsch PetscCall(PetscSectionClone(section, &newSection)); 64779566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm->dmBC, newSection)); 64789566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newSection)); 64799566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm->dmBC, &sf)); 6480eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionCreateGlobalSection(section, sf, usePerm, PETSC_TRUE, PETSC_FALSE, &gsection)); 64819566063dSJacob Faibussowitsch PetscCall(DMSetGlobalSection(dm->dmBC, gsection)); 64829566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&gsection)); 648314f150ffSMatthew G. Knepley } 648414f150ffSMatthew G. Knepley *odm = dm->dmBC; 64853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 648614f150ffSMatthew G. Knepley } 6487f4d763aaSMatthew G. Knepley 6488f4d763aaSMatthew G. Knepley /*@ 6489cdb7a50dSMatthew G. Knepley DMGetOutputSequenceNumber - Retrieve the sequence number/value for output 6490f4d763aaSMatthew G. Knepley 6491f4d763aaSMatthew G. Knepley Input Parameter: 6492bb7acecfSBarry Smith . dm - The original `DM` 6493f4d763aaSMatthew G. Knepley 6494cdb7a50dSMatthew G. Knepley Output Parameters: 6495cdb7a50dSMatthew G. Knepley + num - The output sequence number 6496cdb7a50dSMatthew G. Knepley - val - The output sequence value 6497f4d763aaSMatthew G. Knepley 6498f4d763aaSMatthew G. Knepley Level: intermediate 6499f4d763aaSMatthew G. Knepley 6500bb7acecfSBarry Smith Note: 6501bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6502bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6503bb7acecfSBarry Smith 650473ff1848SBarry Smith Developer Note: 6505bb7acecfSBarry Smith The `DM` serves as a convenient place to store the current iteration value. The iteration is not 6506bb7acecfSBarry Smith not directly related to the `DM`. 6507f4d763aaSMatthew G. Knepley 65081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()` 6509f4d763aaSMatthew G. Knepley @*/ 6510d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputSequenceNumber(DM dm, PetscInt *num, PetscReal *val) 6511d71ae5a4SJacob Faibussowitsch { 6512f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6513f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 65149371c9d4SSatish Balay if (num) { 65154f572ea9SToby Isaac PetscAssertPointer(num, 2); 65169371c9d4SSatish Balay *num = dm->outputSequenceNum; 65179371c9d4SSatish Balay } 65189371c9d4SSatish Balay if (val) { 65194f572ea9SToby Isaac PetscAssertPointer(val, 3); 65209371c9d4SSatish Balay *val = dm->outputSequenceVal; 65219371c9d4SSatish Balay } 65223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6523f4d763aaSMatthew G. Knepley } 6524f4d763aaSMatthew G. Knepley 6525f4d763aaSMatthew G. Knepley /*@ 6526cdb7a50dSMatthew G. Knepley DMSetOutputSequenceNumber - Set the sequence number/value for output 6527f4d763aaSMatthew G. Knepley 6528f4d763aaSMatthew G. Knepley Input Parameters: 6529bb7acecfSBarry Smith + dm - The original `DM` 6530cdb7a50dSMatthew G. Knepley . num - The output sequence number 6531cdb7a50dSMatthew G. Knepley - val - The output sequence value 6532f4d763aaSMatthew G. Knepley 6533f4d763aaSMatthew G. Knepley Level: intermediate 6534f4d763aaSMatthew G. Knepley 6535bb7acecfSBarry Smith Note: 6536bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6537bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6538f4d763aaSMatthew G. Knepley 65391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()` 6540f4d763aaSMatthew G. Knepley @*/ 6541d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOutputSequenceNumber(DM dm, PetscInt num, PetscReal val) 6542d71ae5a4SJacob Faibussowitsch { 6543f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6544f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6545f4d763aaSMatthew G. Knepley dm->outputSequenceNum = num; 6546cdb7a50dSMatthew G. Knepley dm->outputSequenceVal = val; 65473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6548cdb7a50dSMatthew G. Knepley } 6549cdb7a50dSMatthew G. Knepley 6550cdb7a50dSMatthew G. Knepley /*@C 6551bb7acecfSBarry Smith DMOutputSequenceLoad - Retrieve the sequence value from a `PetscViewer` 6552cdb7a50dSMatthew G. Knepley 6553cdb7a50dSMatthew G. Knepley Input Parameters: 6554bb7acecfSBarry Smith + dm - The original `DM` 6555a4e35b19SJacob Faibussowitsch . viewer - The viewer to get it from 6556cdb7a50dSMatthew G. Knepley . name - The sequence name 6557cdb7a50dSMatthew G. Knepley - num - The output sequence number 6558cdb7a50dSMatthew G. Knepley 6559cdb7a50dSMatthew G. Knepley Output Parameter: 6560cdb7a50dSMatthew G. Knepley . val - The output sequence value 6561cdb7a50dSMatthew G. Knepley 6562cdb7a50dSMatthew G. Knepley Level: intermediate 6563cdb7a50dSMatthew G. Knepley 6564bb7acecfSBarry Smith Note: 6565bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6566bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6567bb7acecfSBarry Smith 656873ff1848SBarry Smith Developer Note: 6569bb7acecfSBarry Smith It is unclear at the user API level why a `DM` is needed as input 6570cdb7a50dSMatthew G. Knepley 65711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()` 6572cdb7a50dSMatthew G. Knepley @*/ 6573d71ae5a4SJacob Faibussowitsch PetscErrorCode DMOutputSequenceLoad(DM dm, PetscViewer viewer, const char *name, PetscInt num, PetscReal *val) 6574d71ae5a4SJacob Faibussowitsch { 6575cdb7a50dSMatthew G. Knepley PetscBool ishdf5; 6576cdb7a50dSMatthew G. Knepley 6577cdb7a50dSMatthew G. Knepley PetscFunctionBegin; 6578cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6579cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 65804f572ea9SToby Isaac PetscAssertPointer(val, 5); 65819566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 6582cdb7a50dSMatthew G. Knepley if (ishdf5) { 6583cdb7a50dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 6584cdb7a50dSMatthew G. Knepley PetscScalar value; 6585cdb7a50dSMatthew G. Knepley 65869566063dSJacob Faibussowitsch PetscCall(DMSequenceLoad_HDF5_Internal(dm, name, num, &value, viewer)); 65874aeb217fSMatthew G. Knepley *val = PetscRealPart(value); 6588cdb7a50dSMatthew G. Knepley #endif 6589cdb7a50dSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()"); 65903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6591f4d763aaSMatthew G. Knepley } 65928e4ac7eaSMatthew G. Knepley 65938e4ac7eaSMatthew G. Knepley /*@ 6594bb7acecfSBarry Smith DMGetUseNatural - Get the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 65958e4ac7eaSMatthew G. Knepley 659620f4b53cSBarry Smith Not Collective 65978e4ac7eaSMatthew G. Knepley 65988e4ac7eaSMatthew G. Knepley Input Parameter: 6599bb7acecfSBarry Smith . dm - The `DM` 66008e4ac7eaSMatthew G. Knepley 66018e4ac7eaSMatthew G. Knepley Output Parameter: 6602bb7acecfSBarry Smith . useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 66038e4ac7eaSMatthew G. Knepley 66048e4ac7eaSMatthew G. Knepley Level: beginner 66058e4ac7eaSMatthew G. Knepley 66061cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetUseNatural()`, `DMCreate()` 66078e4ac7eaSMatthew G. Knepley @*/ 6608d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetUseNatural(DM dm, PetscBool *useNatural) 6609d71ae5a4SJacob Faibussowitsch { 66108e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 66118e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 66124f572ea9SToby Isaac PetscAssertPointer(useNatural, 2); 66138e4ac7eaSMatthew G. Knepley *useNatural = dm->useNatural; 66143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 66158e4ac7eaSMatthew G. Knepley } 66168e4ac7eaSMatthew G. Knepley 66178e4ac7eaSMatthew G. Knepley /*@ 6618bb7acecfSBarry Smith DMSetUseNatural - Set the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 66198e4ac7eaSMatthew G. Knepley 662020f4b53cSBarry Smith Collective 66218e4ac7eaSMatthew G. Knepley 66228e4ac7eaSMatthew G. Knepley Input Parameters: 6623bb7acecfSBarry Smith + dm - The `DM` 6624bb7acecfSBarry Smith - useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 66258e4ac7eaSMatthew G. Knepley 662673ff1848SBarry Smith Level: beginner 662773ff1848SBarry Smith 6628bb7acecfSBarry Smith Note: 6629bb7acecfSBarry Smith This also causes the map to be build after `DMCreateSubDM()` and `DMCreateSuperDM()` 66305d3b26e6SMatthew G. Knepley 66311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetUseNatural()`, `DMCreate()`, `DMPlexDistribute()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 66328e4ac7eaSMatthew G. Knepley @*/ 6633d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUseNatural(DM dm, PetscBool useNatural) 6634d71ae5a4SJacob Faibussowitsch { 66358e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 66368e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 66378833efb5SBlaise Bourdin PetscValidLogicalCollectiveBool(dm, useNatural, 2); 66388e4ac7eaSMatthew G. Knepley dm->useNatural = useNatural; 66393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 66408e4ac7eaSMatthew G. Knepley } 6641c58f1c22SToby Isaac 6642c58f1c22SToby Isaac /*@C 6643bb7acecfSBarry Smith DMCreateLabel - Create a label of the given name if it does not already exist in the `DM` 6644c58f1c22SToby Isaac 6645c58f1c22SToby Isaac Not Collective 6646c58f1c22SToby Isaac 6647c58f1c22SToby Isaac Input Parameters: 6648bb7acecfSBarry Smith + dm - The `DM` object 6649c58f1c22SToby Isaac - name - The label name 6650c58f1c22SToby Isaac 6651c58f1c22SToby Isaac Level: intermediate 6652c58f1c22SToby Isaac 66531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6654c58f1c22SToby Isaac @*/ 6655d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabel(DM dm, const char name[]) 6656d71ae5a4SJacob Faibussowitsch { 66575d80c0bfSVaclav Hapla PetscBool flg; 66585d80c0bfSVaclav Hapla DMLabel label; 6659c58f1c22SToby Isaac 6660c58f1c22SToby Isaac PetscFunctionBegin; 6661c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 66624f572ea9SToby Isaac PetscAssertPointer(name, 2); 66639566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 6664c58f1c22SToby Isaac if (!flg) { 66659566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 66669566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 66679566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 6668c58f1c22SToby Isaac } 66693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6670c58f1c22SToby Isaac } 6671c58f1c22SToby Isaac 6672c58f1c22SToby Isaac /*@C 6673bb7acecfSBarry Smith DMCreateLabelAtIndex - Create a label of the given name at the given index. If it already exists in the `DM`, move it to this index. 66740fdc7489SMatthew Knepley 66750fdc7489SMatthew Knepley Not Collective 66760fdc7489SMatthew Knepley 66770fdc7489SMatthew Knepley Input Parameters: 6678bb7acecfSBarry Smith + dm - The `DM` object 66790fdc7489SMatthew Knepley . l - The index for the label 66800fdc7489SMatthew Knepley - name - The label name 66810fdc7489SMatthew Knepley 66820fdc7489SMatthew Knepley Level: intermediate 66830fdc7489SMatthew Knepley 66841cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateLabel()`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 66850fdc7489SMatthew Knepley @*/ 6686d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabelAtIndex(DM dm, PetscInt l, const char name[]) 6687d71ae5a4SJacob Faibussowitsch { 66880fdc7489SMatthew Knepley DMLabelLink orig, prev = NULL; 66890fdc7489SMatthew Knepley DMLabel label; 66900fdc7489SMatthew Knepley PetscInt Nl, m; 66910fdc7489SMatthew Knepley PetscBool flg, match; 66920fdc7489SMatthew Knepley const char *lname; 66930fdc7489SMatthew Knepley 66940fdc7489SMatthew Knepley PetscFunctionBegin; 66950fdc7489SMatthew Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 66964f572ea9SToby Isaac PetscAssertPointer(name, 3); 66979566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 66980fdc7489SMatthew Knepley if (!flg) { 66999566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 67009566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 67019566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 67020fdc7489SMatthew Knepley } 67039566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 670463a3b9bcSJacob Faibussowitsch PetscCheck(l < Nl, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label index %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", l, Nl); 67050fdc7489SMatthew Knepley for (m = 0, orig = dm->labels; m < Nl; ++m, prev = orig, orig = orig->next) { 67069566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)orig->label, &lname)); 67079566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &match)); 67080fdc7489SMatthew Knepley if (match) break; 67090fdc7489SMatthew Knepley } 67103ba16761SJacob Faibussowitsch if (m == l) PetscFunctionReturn(PETSC_SUCCESS); 67110fdc7489SMatthew Knepley if (!m) dm->labels = orig->next; 67120fdc7489SMatthew Knepley else prev->next = orig->next; 67130fdc7489SMatthew Knepley if (!l) { 67140fdc7489SMatthew Knepley orig->next = dm->labels; 67150fdc7489SMatthew Knepley dm->labels = orig; 67160fdc7489SMatthew Knepley } else { 6717fbccb6d4SPierre Jolivet for (m = 0, prev = dm->labels; m < l - 1; ++m, prev = prev->next); 67180fdc7489SMatthew Knepley orig->next = prev->next; 67190fdc7489SMatthew Knepley prev->next = orig; 67200fdc7489SMatthew Knepley } 67213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 67220fdc7489SMatthew Knepley } 67230fdc7489SMatthew Knepley 67240fdc7489SMatthew Knepley /*@C 6725bb7acecfSBarry Smith DMGetLabelValue - Get the value in a `DMLabel` for the given point, with -1 as the default 6726c58f1c22SToby Isaac 6727c58f1c22SToby Isaac Not Collective 6728c58f1c22SToby Isaac 6729c58f1c22SToby Isaac Input Parameters: 6730bb7acecfSBarry Smith + dm - The `DM` object 6731c58f1c22SToby Isaac . name - The label name 6732c58f1c22SToby Isaac - point - The mesh point 6733c58f1c22SToby Isaac 6734c58f1c22SToby Isaac Output Parameter: 6735c58f1c22SToby Isaac . value - The label value for this point, or -1 if the point is not in the label 6736c58f1c22SToby Isaac 6737c58f1c22SToby Isaac Level: beginner 6738c58f1c22SToby Isaac 67391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6740c58f1c22SToby Isaac @*/ 6741d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelValue(DM dm, const char name[], PetscInt point, PetscInt *value) 6742d71ae5a4SJacob Faibussowitsch { 6743c58f1c22SToby Isaac DMLabel label; 6744c58f1c22SToby Isaac 6745c58f1c22SToby Isaac PetscFunctionBegin; 6746c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67474f572ea9SToby Isaac PetscAssertPointer(name, 2); 67489566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 67497a8be351SBarry Smith PetscCheck(label, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No label named %s was found", name); 67509566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, value)); 67513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6752c58f1c22SToby Isaac } 6753c58f1c22SToby Isaac 6754c58f1c22SToby Isaac /*@C 6755bb7acecfSBarry Smith DMSetLabelValue - Add a point to a `DMLabel` with given value 6756c58f1c22SToby Isaac 6757c58f1c22SToby Isaac Not Collective 6758c58f1c22SToby Isaac 6759c58f1c22SToby Isaac Input Parameters: 6760bb7acecfSBarry Smith + dm - The `DM` object 6761c58f1c22SToby Isaac . name - The label name 6762c58f1c22SToby Isaac . point - The mesh point 6763c58f1c22SToby Isaac - value - The label value for this point 6764c58f1c22SToby Isaac 6765c58f1c22SToby Isaac Output Parameter: 6766c58f1c22SToby Isaac 6767c58f1c22SToby Isaac Level: beginner 6768c58f1c22SToby Isaac 67691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelSetValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 6770c58f1c22SToby Isaac @*/ 6771d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6772d71ae5a4SJacob Faibussowitsch { 6773c58f1c22SToby Isaac DMLabel label; 6774c58f1c22SToby Isaac 6775c58f1c22SToby Isaac PetscFunctionBegin; 6776c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67774f572ea9SToby Isaac PetscAssertPointer(name, 2); 67789566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6779c58f1c22SToby Isaac if (!label) { 67809566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 67819566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6782c58f1c22SToby Isaac } 67839566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, value)); 67843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6785c58f1c22SToby Isaac } 6786c58f1c22SToby Isaac 6787c58f1c22SToby Isaac /*@C 6788bb7acecfSBarry Smith DMClearLabelValue - Remove a point from a `DMLabel` with given value 6789c58f1c22SToby Isaac 6790c58f1c22SToby Isaac Not Collective 6791c58f1c22SToby Isaac 6792c58f1c22SToby Isaac Input Parameters: 6793bb7acecfSBarry Smith + dm - The `DM` object 6794c58f1c22SToby Isaac . name - The label name 6795c58f1c22SToby Isaac . point - The mesh point 6796c58f1c22SToby Isaac - value - The label value for this point 6797c58f1c22SToby Isaac 6798c58f1c22SToby Isaac Level: beginner 6799c58f1c22SToby Isaac 68001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelClearValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6801c58f1c22SToby Isaac @*/ 6802d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6803d71ae5a4SJacob Faibussowitsch { 6804c58f1c22SToby Isaac DMLabel label; 6805c58f1c22SToby Isaac 6806c58f1c22SToby Isaac PetscFunctionBegin; 6807c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68084f572ea9SToby Isaac PetscAssertPointer(name, 2); 68099566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 68103ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 68119566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, value)); 68123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6813c58f1c22SToby Isaac } 6814c58f1c22SToby Isaac 6815c58f1c22SToby Isaac /*@C 6816bb7acecfSBarry Smith DMGetLabelSize - Get the value of `DMLabelGetNumValues()` of a `DMLabel` in the `DM` 6817c58f1c22SToby Isaac 6818c58f1c22SToby Isaac Not Collective 6819c58f1c22SToby Isaac 6820c58f1c22SToby Isaac Input Parameters: 6821bb7acecfSBarry Smith + dm - The `DM` object 6822c58f1c22SToby Isaac - name - The label name 6823c58f1c22SToby Isaac 6824c58f1c22SToby Isaac Output Parameter: 6825c58f1c22SToby Isaac . size - The number of different integer ids, or 0 if the label does not exist 6826c58f1c22SToby Isaac 6827c58f1c22SToby Isaac Level: beginner 6828c58f1c22SToby Isaac 682973ff1848SBarry Smith Developer Note: 6830bb7acecfSBarry Smith This should be renamed to something like `DMGetLabelNumValues()` or removed. 6831bb7acecfSBarry Smith 68321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetNumValues()`, `DMSetLabelValue()`, `DMGetLabel()` 6833c58f1c22SToby Isaac @*/ 6834d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelSize(DM dm, const char name[], PetscInt *size) 6835d71ae5a4SJacob Faibussowitsch { 6836c58f1c22SToby Isaac DMLabel label; 6837c58f1c22SToby Isaac 6838c58f1c22SToby Isaac PetscFunctionBegin; 6839c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68404f572ea9SToby Isaac PetscAssertPointer(name, 2); 68414f572ea9SToby Isaac PetscAssertPointer(size, 3); 68429566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6843c58f1c22SToby Isaac *size = 0; 68443ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 68459566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, size)); 68463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6847c58f1c22SToby Isaac } 6848c58f1c22SToby Isaac 6849c58f1c22SToby Isaac /*@C 6850bb7acecfSBarry Smith DMGetLabelIdIS - Get the `DMLabelGetValueIS()` from a `DMLabel` in the `DM` 6851c58f1c22SToby Isaac 6852c58f1c22SToby Isaac Not Collective 6853c58f1c22SToby Isaac 6854c58f1c22SToby Isaac Input Parameters: 685560225df5SJacob Faibussowitsch + dm - The `DM` object 6856c58f1c22SToby Isaac - name - The label name 6857c58f1c22SToby Isaac 6858c58f1c22SToby Isaac Output Parameter: 685920f4b53cSBarry Smith . ids - The integer ids, or `NULL` if the label does not exist 6860c58f1c22SToby Isaac 6861c58f1c22SToby Isaac Level: beginner 6862c58f1c22SToby Isaac 68631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValueIS()`, `DMGetLabelSize()` 6864c58f1c22SToby Isaac @*/ 6865d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelIdIS(DM dm, const char name[], IS *ids) 6866d71ae5a4SJacob Faibussowitsch { 6867c58f1c22SToby Isaac DMLabel label; 6868c58f1c22SToby Isaac 6869c58f1c22SToby Isaac PetscFunctionBegin; 6870c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68714f572ea9SToby Isaac PetscAssertPointer(name, 2); 68724f572ea9SToby Isaac PetscAssertPointer(ids, 3); 68739566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6874c58f1c22SToby Isaac *ids = NULL; 6875dab2e251SBlaise Bourdin if (label) { 68769566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, ids)); 6877dab2e251SBlaise Bourdin } else { 6878dab2e251SBlaise Bourdin /* returning an empty IS */ 68799566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_USE_POINTER, ids)); 6880dab2e251SBlaise Bourdin } 68813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6882c58f1c22SToby Isaac } 6883c58f1c22SToby Isaac 6884c58f1c22SToby Isaac /*@C 6885c58f1c22SToby Isaac DMGetStratumSize - Get the number of points in a label stratum 6886c58f1c22SToby Isaac 6887c58f1c22SToby Isaac Not Collective 6888c58f1c22SToby Isaac 6889c58f1c22SToby Isaac Input Parameters: 6890bb7acecfSBarry Smith + dm - The `DM` object 6891*b6971eaeSBarry Smith . name - The label name of the stratum 6892c58f1c22SToby Isaac - value - The stratum value 6893c58f1c22SToby Isaac 6894c58f1c22SToby Isaac Output Parameter: 6895bb7acecfSBarry Smith . size - The number of points, also called the stratum size 6896c58f1c22SToby Isaac 6897c58f1c22SToby Isaac Level: beginner 6898c58f1c22SToby Isaac 68991cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumSize()`, `DMGetLabelSize()`, `DMGetLabelIds()` 6900c58f1c22SToby Isaac @*/ 6901d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumSize(DM dm, const char name[], PetscInt value, PetscInt *size) 6902d71ae5a4SJacob Faibussowitsch { 6903c58f1c22SToby Isaac DMLabel label; 6904c58f1c22SToby Isaac 6905c58f1c22SToby Isaac PetscFunctionBegin; 6906c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69074f572ea9SToby Isaac PetscAssertPointer(name, 2); 69084f572ea9SToby Isaac PetscAssertPointer(size, 4); 69099566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6910c58f1c22SToby Isaac *size = 0; 69113ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69129566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, value, size)); 69133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6914c58f1c22SToby Isaac } 6915c58f1c22SToby Isaac 6916c58f1c22SToby Isaac /*@C 6917c58f1c22SToby Isaac DMGetStratumIS - Get the points in a label stratum 6918c58f1c22SToby Isaac 6919c58f1c22SToby Isaac Not Collective 6920c58f1c22SToby Isaac 6921c58f1c22SToby Isaac Input Parameters: 6922bb7acecfSBarry Smith + dm - The `DM` object 6923c58f1c22SToby Isaac . name - The label name 6924c58f1c22SToby Isaac - value - The stratum value 6925c58f1c22SToby Isaac 6926c58f1c22SToby Isaac Output Parameter: 692720f4b53cSBarry Smith . points - The stratum points, or `NULL` if the label does not exist or does not have that value 6928c58f1c22SToby Isaac 6929c58f1c22SToby Isaac Level: beginner 6930c58f1c22SToby Isaac 69311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumIS()`, `DMGetStratumSize()` 6932c58f1c22SToby Isaac @*/ 6933d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumIS(DM dm, const char name[], PetscInt value, IS *points) 6934d71ae5a4SJacob Faibussowitsch { 6935c58f1c22SToby Isaac DMLabel label; 6936c58f1c22SToby Isaac 6937c58f1c22SToby Isaac PetscFunctionBegin; 6938c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69394f572ea9SToby Isaac PetscAssertPointer(name, 2); 69404f572ea9SToby Isaac PetscAssertPointer(points, 4); 69419566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6942c58f1c22SToby Isaac *points = NULL; 69433ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69449566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, value, points)); 69453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6946c58f1c22SToby Isaac } 6947c58f1c22SToby Isaac 69484de306b1SToby Isaac /*@C 69499044fa66SMatthew G. Knepley DMSetStratumIS - Set the points in a label stratum 69504de306b1SToby Isaac 69514de306b1SToby Isaac Not Collective 69524de306b1SToby Isaac 69534de306b1SToby Isaac Input Parameters: 6954bb7acecfSBarry Smith + dm - The `DM` object 69554de306b1SToby Isaac . name - The label name 69564de306b1SToby Isaac . value - The stratum value 69574de306b1SToby Isaac - points - The stratum points 69584de306b1SToby Isaac 69594de306b1SToby Isaac Level: beginner 69604de306b1SToby Isaac 69611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMClearLabelStratum()`, `DMLabelClearStratum()`, `DMLabelSetStratumIS()`, `DMGetStratumSize()` 69624de306b1SToby Isaac @*/ 6963d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetStratumIS(DM dm, const char name[], PetscInt value, IS points) 6964d71ae5a4SJacob Faibussowitsch { 69654de306b1SToby Isaac DMLabel label; 69664de306b1SToby Isaac 69674de306b1SToby Isaac PetscFunctionBegin; 69684de306b1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69694f572ea9SToby Isaac PetscAssertPointer(name, 2); 6970292bffcbSToby Isaac PetscValidHeaderSpecific(points, IS_CLASSID, 4); 69719566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 69723ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69739566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(label, value, points)); 69743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 69754de306b1SToby Isaac } 69764de306b1SToby Isaac 6977c58f1c22SToby Isaac /*@C 6978bb7acecfSBarry Smith DMClearLabelStratum - Remove all points from a stratum from a `DMLabel` 6979c58f1c22SToby Isaac 6980c58f1c22SToby Isaac Not Collective 6981c58f1c22SToby Isaac 6982c58f1c22SToby Isaac Input Parameters: 6983bb7acecfSBarry Smith + dm - The `DM` object 6984c58f1c22SToby Isaac . name - The label name 6985c58f1c22SToby Isaac - value - The label value for this point 6986c58f1c22SToby Isaac 6987c58f1c22SToby Isaac Output Parameter: 6988c58f1c22SToby Isaac 6989c58f1c22SToby Isaac Level: beginner 6990c58f1c22SToby Isaac 69911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMLabelClearStratum()`, `DMSetLabelValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 6992c58f1c22SToby Isaac @*/ 6993d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelStratum(DM dm, const char name[], PetscInt value) 6994d71ae5a4SJacob Faibussowitsch { 6995c58f1c22SToby Isaac DMLabel label; 6996c58f1c22SToby Isaac 6997c58f1c22SToby Isaac PetscFunctionBegin; 6998c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69994f572ea9SToby Isaac PetscAssertPointer(name, 2); 70009566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 70013ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 70029566063dSJacob Faibussowitsch PetscCall(DMLabelClearStratum(label, value)); 70033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7004c58f1c22SToby Isaac } 7005c58f1c22SToby Isaac 7006c58f1c22SToby Isaac /*@ 7007bb7acecfSBarry Smith DMGetNumLabels - Return the number of labels defined by on the `DM` 7008c58f1c22SToby Isaac 7009c58f1c22SToby Isaac Not Collective 7010c58f1c22SToby Isaac 7011c58f1c22SToby Isaac Input Parameter: 7012bb7acecfSBarry Smith . dm - The `DM` object 7013c58f1c22SToby Isaac 7014c58f1c22SToby Isaac Output Parameter: 7015c58f1c22SToby Isaac . numLabels - the number of Labels 7016c58f1c22SToby Isaac 7017c58f1c22SToby Isaac Level: intermediate 7018c58f1c22SToby Isaac 70191cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabelName()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7020c58f1c22SToby Isaac @*/ 7021d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumLabels(DM dm, PetscInt *numLabels) 7022d71ae5a4SJacob Faibussowitsch { 70235d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7024c58f1c22SToby Isaac PetscInt n = 0; 7025c58f1c22SToby Isaac 7026c58f1c22SToby Isaac PetscFunctionBegin; 7027c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70284f572ea9SToby Isaac PetscAssertPointer(numLabels, 2); 70299371c9d4SSatish Balay while (next) { 70309371c9d4SSatish Balay ++n; 70319371c9d4SSatish Balay next = next->next; 70329371c9d4SSatish Balay } 7033c58f1c22SToby Isaac *numLabels = n; 70343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7035c58f1c22SToby Isaac } 7036c58f1c22SToby Isaac 7037c58f1c22SToby Isaac /*@C 7038c58f1c22SToby Isaac DMGetLabelName - Return the name of nth label 7039c58f1c22SToby Isaac 7040c58f1c22SToby Isaac Not Collective 7041c58f1c22SToby Isaac 7042c58f1c22SToby Isaac Input Parameters: 7043bb7acecfSBarry Smith + dm - The `DM` object 7044c58f1c22SToby Isaac - n - the label number 7045c58f1c22SToby Isaac 7046c58f1c22SToby Isaac Output Parameter: 7047c58f1c22SToby Isaac . name - the label name 7048c58f1c22SToby Isaac 7049c58f1c22SToby Isaac Level: intermediate 7050c58f1c22SToby Isaac 705173ff1848SBarry Smith Developer Note: 7052bb7acecfSBarry Smith Some of the functions that appropriate on labels using their number have the suffix ByNum, others do not. 7053bb7acecfSBarry Smith 70541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7055c58f1c22SToby Isaac @*/ 7056d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelName(DM dm, PetscInt n, const char **name) 7057d71ae5a4SJacob Faibussowitsch { 70585d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7059c58f1c22SToby Isaac PetscInt l = 0; 7060c58f1c22SToby Isaac 7061c58f1c22SToby Isaac PetscFunctionBegin; 7062c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70634f572ea9SToby Isaac PetscAssertPointer(name, 3); 7064c58f1c22SToby Isaac while (next) { 7065c58f1c22SToby Isaac if (l == n) { 70669566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, name)); 70673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7068c58f1c22SToby Isaac } 7069c58f1c22SToby Isaac ++l; 7070c58f1c22SToby Isaac next = next->next; 7071c58f1c22SToby Isaac } 707263a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 7073c58f1c22SToby Isaac } 7074c58f1c22SToby Isaac 7075c58f1c22SToby Isaac /*@C 7076bb7acecfSBarry Smith DMHasLabel - Determine whether the `DM` has a label of a given name 7077c58f1c22SToby Isaac 7078c58f1c22SToby Isaac Not Collective 7079c58f1c22SToby Isaac 7080c58f1c22SToby Isaac Input Parameters: 7081bb7acecfSBarry Smith + dm - The `DM` object 7082c58f1c22SToby Isaac - name - The label name 7083c58f1c22SToby Isaac 7084c58f1c22SToby Isaac Output Parameter: 7085bb7acecfSBarry Smith . hasLabel - `PETSC_TRUE` if the label is present 7086c58f1c22SToby Isaac 7087c58f1c22SToby Isaac Level: intermediate 7088c58f1c22SToby Isaac 70891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabel()`, `DMGetLabelByNum()`, `DMCreateLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7090c58f1c22SToby Isaac @*/ 7091d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasLabel(DM dm, const char name[], PetscBool *hasLabel) 7092d71ae5a4SJacob Faibussowitsch { 70935d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7094d67d17b1SMatthew G. Knepley const char *lname; 7095c58f1c22SToby Isaac 7096c58f1c22SToby Isaac PetscFunctionBegin; 7097c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70984f572ea9SToby Isaac PetscAssertPointer(name, 2); 70994f572ea9SToby Isaac PetscAssertPointer(hasLabel, 3); 7100c58f1c22SToby Isaac *hasLabel = PETSC_FALSE; 7101c58f1c22SToby Isaac while (next) { 71029566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 71039566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, hasLabel)); 7104c58f1c22SToby Isaac if (*hasLabel) break; 7105c58f1c22SToby Isaac next = next->next; 7106c58f1c22SToby Isaac } 71073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7108c58f1c22SToby Isaac } 7109c58f1c22SToby Isaac 7110a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown 7111c58f1c22SToby Isaac /*@C 711220f4b53cSBarry Smith DMGetLabel - Return the label of a given name, or `NULL`, from a `DM` 7113c58f1c22SToby Isaac 7114c58f1c22SToby Isaac Not Collective 7115c58f1c22SToby Isaac 7116c58f1c22SToby Isaac Input Parameters: 7117bb7acecfSBarry Smith + dm - The `DM` object 7118c58f1c22SToby Isaac - name - The label name 7119c58f1c22SToby Isaac 7120c58f1c22SToby Isaac Output Parameter: 712120f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent 7122c58f1c22SToby Isaac 7123bb7acecfSBarry Smith Default labels in a `DMPLEX`: 7124bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 7125bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 7126bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 7127bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 7128bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 7129bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 71306d7c9049SMatthew G. Knepley 7131c58f1c22SToby Isaac Level: intermediate 7132c58f1c22SToby Isaac 713360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMHasLabel()`, `DMGetLabelByNum()`, `DMAddLabel()`, `DMCreateLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 7134c58f1c22SToby Isaac @*/ 7135d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabel(DM dm, const char name[], DMLabel *label) 7136d71ae5a4SJacob Faibussowitsch { 71375d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7138c58f1c22SToby Isaac PetscBool hasLabel; 7139d67d17b1SMatthew G. Knepley const char *lname; 7140c58f1c22SToby Isaac 7141c58f1c22SToby Isaac PetscFunctionBegin; 7142c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71434f572ea9SToby Isaac PetscAssertPointer(name, 2); 71444f572ea9SToby Isaac PetscAssertPointer(label, 3); 7145c58f1c22SToby Isaac *label = NULL; 7146c58f1c22SToby Isaac while (next) { 71479566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 71489566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 7149c58f1c22SToby Isaac if (hasLabel) { 7150c58f1c22SToby Isaac *label = next->label; 7151c58f1c22SToby Isaac break; 7152c58f1c22SToby Isaac } 7153c58f1c22SToby Isaac next = next->next; 7154c58f1c22SToby Isaac } 71553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7156c58f1c22SToby Isaac } 7157c58f1c22SToby Isaac 7158c58f1c22SToby Isaac /*@C 7159bb7acecfSBarry Smith DMGetLabelByNum - Return the nth label on a `DM` 7160c58f1c22SToby Isaac 7161c58f1c22SToby Isaac Not Collective 7162c58f1c22SToby Isaac 7163c58f1c22SToby Isaac Input Parameters: 7164bb7acecfSBarry Smith + dm - The `DM` object 7165c58f1c22SToby Isaac - n - the label number 7166c58f1c22SToby Isaac 7167c58f1c22SToby Isaac Output Parameter: 7168c58f1c22SToby Isaac . label - the label 7169c58f1c22SToby Isaac 7170c58f1c22SToby Isaac Level: intermediate 7171c58f1c22SToby Isaac 71721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7173c58f1c22SToby Isaac @*/ 7174d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelByNum(DM dm, PetscInt n, DMLabel *label) 7175d71ae5a4SJacob Faibussowitsch { 71765d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7177c58f1c22SToby Isaac PetscInt l = 0; 7178c58f1c22SToby Isaac 7179c58f1c22SToby Isaac PetscFunctionBegin; 7180c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71814f572ea9SToby Isaac PetscAssertPointer(label, 3); 7182c58f1c22SToby Isaac while (next) { 7183c58f1c22SToby Isaac if (l == n) { 7184c58f1c22SToby Isaac *label = next->label; 71853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7186c58f1c22SToby Isaac } 7187c58f1c22SToby Isaac ++l; 7188c58f1c22SToby Isaac next = next->next; 7189c58f1c22SToby Isaac } 719063a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 7191c58f1c22SToby Isaac } 7192c58f1c22SToby Isaac 7193c58f1c22SToby Isaac /*@C 7194bb7acecfSBarry Smith DMAddLabel - Add the label to this `DM` 7195c58f1c22SToby Isaac 7196c58f1c22SToby Isaac Not Collective 7197c58f1c22SToby Isaac 7198c58f1c22SToby Isaac Input Parameters: 7199bb7acecfSBarry Smith + dm - The `DM` object 7200bb7acecfSBarry Smith - label - The `DMLabel` 7201c58f1c22SToby Isaac 7202c58f1c22SToby Isaac Level: developer 7203c58f1c22SToby Isaac 720460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7205c58f1c22SToby Isaac @*/ 7206d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddLabel(DM dm, DMLabel label) 7207d71ae5a4SJacob Faibussowitsch { 72085d80c0bfSVaclav Hapla DMLabelLink l, *p, tmpLabel; 7209c58f1c22SToby Isaac PetscBool hasLabel; 7210d67d17b1SMatthew G. Knepley const char *lname; 72115d80c0bfSVaclav Hapla PetscBool flg; 7212c58f1c22SToby Isaac 7213c58f1c22SToby Isaac PetscFunctionBegin; 7214c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72159566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &lname)); 72169566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, lname, &hasLabel)); 72177a8be351SBarry Smith PetscCheck(!hasLabel, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in this DM", lname); 72189566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(1, &tmpLabel)); 7219c58f1c22SToby Isaac tmpLabel->label = label; 7220c58f1c22SToby Isaac tmpLabel->output = PETSC_TRUE; 72215d80c0bfSVaclav Hapla for (p = &dm->labels; (l = *p); p = &l->next) { } 72225d80c0bfSVaclav Hapla *p = tmpLabel; 72239566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 72249566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 72255d80c0bfSVaclav Hapla if (flg) dm->depthLabel = label; 72269566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 7227ba2698f1SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 72283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7229c58f1c22SToby Isaac } 7230c58f1c22SToby Isaac 7231a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown 7232c58f1c22SToby Isaac /*@C 72334a7ee7d0SMatthew G. Knepley DMSetLabel - Replaces the label of a given name, or ignores it if the name is not present 72344a7ee7d0SMatthew G. Knepley 72354a7ee7d0SMatthew G. Knepley Not Collective 72364a7ee7d0SMatthew G. Knepley 72374a7ee7d0SMatthew G. Knepley Input Parameters: 7238bb7acecfSBarry Smith + dm - The `DM` object 7239bb7acecfSBarry Smith - label - The `DMLabel`, having the same name, to substitute 72404a7ee7d0SMatthew G. Knepley 7241bb7acecfSBarry Smith Default labels in a `DMPLEX`: 7242bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 7243bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 7244bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 7245bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 7246bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 7247bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 72484a7ee7d0SMatthew G. Knepley 72494a7ee7d0SMatthew G. Knepley Level: intermediate 72504a7ee7d0SMatthew G. Knepley 72511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 72524a7ee7d0SMatthew G. Knepley @*/ 7253d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabel(DM dm, DMLabel label) 7254d71ae5a4SJacob Faibussowitsch { 72554a7ee7d0SMatthew G. Knepley DMLabelLink next = dm->labels; 72564a7ee7d0SMatthew G. Knepley PetscBool hasLabel, flg; 72574a7ee7d0SMatthew G. Knepley const char *name, *lname; 72584a7ee7d0SMatthew G. Knepley 72594a7ee7d0SMatthew G. Knepley PetscFunctionBegin; 72604a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72614a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 72629566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 72634a7ee7d0SMatthew G. Knepley while (next) { 72649566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 72659566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 72664a7ee7d0SMatthew G. Knepley if (hasLabel) { 72679566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 72689566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 72694a7ee7d0SMatthew G. Knepley if (flg) dm->depthLabel = label; 72709566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 72714a7ee7d0SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 72729566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 72734a7ee7d0SMatthew G. Knepley next->label = label; 72744a7ee7d0SMatthew G. Knepley break; 72754a7ee7d0SMatthew G. Knepley } 72764a7ee7d0SMatthew G. Knepley next = next->next; 72774a7ee7d0SMatthew G. Knepley } 72783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 72794a7ee7d0SMatthew G. Knepley } 72804a7ee7d0SMatthew G. Knepley 72814a7ee7d0SMatthew G. Knepley /*@C 7282bb7acecfSBarry Smith DMRemoveLabel - Remove the label given by name from this `DM` 7283c58f1c22SToby Isaac 7284c58f1c22SToby Isaac Not Collective 7285c58f1c22SToby Isaac 7286c58f1c22SToby Isaac Input Parameters: 7287bb7acecfSBarry Smith + dm - The `DM` object 7288c58f1c22SToby Isaac - name - The label name 7289c58f1c22SToby Isaac 7290c58f1c22SToby Isaac Output Parameter: 729120f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent. Pass in `NULL` to call `DMLabelDestroy()` on the label, otherwise the 7292bb7acecfSBarry Smith caller is responsible for calling `DMLabelDestroy()`. 7293c58f1c22SToby Isaac 7294c58f1c22SToby Isaac Level: developer 7295c58f1c22SToby Isaac 72961cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabelBySelf()` 7297c58f1c22SToby Isaac @*/ 7298d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabel(DM dm, const char name[], DMLabel *label) 7299d71ae5a4SJacob Faibussowitsch { 730095d578d6SVaclav Hapla DMLabelLink link, *pnext; 7301c58f1c22SToby Isaac PetscBool hasLabel; 7302d67d17b1SMatthew G. Knepley const char *lname; 7303c58f1c22SToby Isaac 7304c58f1c22SToby Isaac PetscFunctionBegin; 7305c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73064f572ea9SToby Isaac PetscAssertPointer(name, 2); 7307e5472504SVaclav Hapla if (label) { 73084f572ea9SToby Isaac PetscAssertPointer(label, 3); 7309c58f1c22SToby Isaac *label = NULL; 7310e5472504SVaclav Hapla } 73115d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 73129566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)link->label, &lname)); 73139566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 7314c58f1c22SToby Isaac if (hasLabel) { 731595d578d6SVaclav Hapla *pnext = link->next; /* Remove from list */ 73169566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &hasLabel)); 731795d578d6SVaclav Hapla if (hasLabel) dm->depthLabel = NULL; 73189566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &hasLabel)); 7319ba2698f1SMatthew G. Knepley if (hasLabel) dm->celltypeLabel = NULL; 732095d578d6SVaclav Hapla if (label) *label = link->label; 73219566063dSJacob Faibussowitsch else PetscCall(DMLabelDestroy(&link->label)); 73229566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7323c58f1c22SToby Isaac break; 7324c58f1c22SToby Isaac } 7325c58f1c22SToby Isaac } 73263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7327c58f1c22SToby Isaac } 7328c58f1c22SToby Isaac 7329306894acSVaclav Hapla /*@ 7330bb7acecfSBarry Smith DMRemoveLabelBySelf - Remove the label from this `DM` 7331306894acSVaclav Hapla 7332306894acSVaclav Hapla Not Collective 7333306894acSVaclav Hapla 7334306894acSVaclav Hapla Input Parameters: 7335bb7acecfSBarry Smith + dm - The `DM` object 7336bb7acecfSBarry Smith . label - The `DMLabel` to be removed from the `DM` 733720f4b53cSBarry Smith - failNotFound - Should it fail if the label is not found in the `DM`? 7338306894acSVaclav Hapla 7339306894acSVaclav Hapla Level: developer 7340306894acSVaclav Hapla 7341bb7acecfSBarry Smith Note: 7342306894acSVaclav Hapla Only exactly the same instance is removed if found, name match is ignored. 7343bb7acecfSBarry Smith If the `DM` has an exclusive reference to the label, the label gets destroyed and 7344306894acSVaclav Hapla *label nullified. 7345306894acSVaclav Hapla 73461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()` `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabel()` 7347306894acSVaclav Hapla @*/ 7348d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabelBySelf(DM dm, DMLabel *label, PetscBool failNotFound) 7349d71ae5a4SJacob Faibussowitsch { 735043e45a93SVaclav Hapla DMLabelLink link, *pnext; 7351306894acSVaclav Hapla PetscBool hasLabel = PETSC_FALSE; 7352306894acSVaclav Hapla 7353306894acSVaclav Hapla PetscFunctionBegin; 7354306894acSVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73554f572ea9SToby Isaac PetscAssertPointer(label, 2); 73563ba16761SJacob Faibussowitsch if (!*label && !failNotFound) PetscFunctionReturn(PETSC_SUCCESS); 7357306894acSVaclav Hapla PetscValidHeaderSpecific(*label, DMLABEL_CLASSID, 2); 7358306894acSVaclav Hapla PetscValidLogicalCollectiveBool(dm, failNotFound, 3); 73595d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 736043e45a93SVaclav Hapla if (*label == link->label) { 7361306894acSVaclav Hapla hasLabel = PETSC_TRUE; 736243e45a93SVaclav Hapla *pnext = link->next; /* Remove from list */ 7363306894acSVaclav Hapla if (*label == dm->depthLabel) dm->depthLabel = NULL; 7364ba2698f1SMatthew G. Knepley if (*label == dm->celltypeLabel) dm->celltypeLabel = NULL; 736543e45a93SVaclav Hapla if (((PetscObject)link->label)->refct < 2) *label = NULL; /* nullify if exclusive reference */ 73669566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&link->label)); 73679566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7368306894acSVaclav Hapla break; 7369306894acSVaclav Hapla } 7370306894acSVaclav Hapla } 73717a8be351SBarry Smith PetscCheck(hasLabel || !failNotFound, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Given label not found in DM"); 73723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7373306894acSVaclav Hapla } 7374306894acSVaclav Hapla 7375c58f1c22SToby Isaac /*@C 7376c58f1c22SToby Isaac DMGetLabelOutput - Get the output flag for a given label 7377c58f1c22SToby Isaac 7378c58f1c22SToby Isaac Not Collective 7379c58f1c22SToby Isaac 7380c58f1c22SToby Isaac Input Parameters: 7381bb7acecfSBarry Smith + dm - The `DM` object 7382c58f1c22SToby Isaac - name - The label name 7383c58f1c22SToby Isaac 7384c58f1c22SToby Isaac Output Parameter: 7385c58f1c22SToby Isaac . output - The flag for output 7386c58f1c22SToby Isaac 7387c58f1c22SToby Isaac Level: developer 7388c58f1c22SToby Isaac 73891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMSetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7390c58f1c22SToby Isaac @*/ 7391d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelOutput(DM dm, const char name[], PetscBool *output) 7392d71ae5a4SJacob Faibussowitsch { 73935d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7394d67d17b1SMatthew G. Knepley const char *lname; 7395c58f1c22SToby Isaac 7396c58f1c22SToby Isaac PetscFunctionBegin; 7397c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73984f572ea9SToby Isaac PetscAssertPointer(name, 2); 73994f572ea9SToby Isaac PetscAssertPointer(output, 3); 7400c58f1c22SToby Isaac while (next) { 7401c58f1c22SToby Isaac PetscBool flg; 7402c58f1c22SToby Isaac 74039566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 74049566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 74059371c9d4SSatish Balay if (flg) { 74069371c9d4SSatish Balay *output = next->output; 74073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 74089371c9d4SSatish Balay } 7409c58f1c22SToby Isaac next = next->next; 7410c58f1c22SToby Isaac } 741198921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7412c58f1c22SToby Isaac } 7413c58f1c22SToby Isaac 7414c58f1c22SToby Isaac /*@C 7415bb7acecfSBarry Smith DMSetLabelOutput - Set if a given label should be saved to a `PetscViewer` in calls to `DMView()` 7416c58f1c22SToby Isaac 7417c58f1c22SToby Isaac Not Collective 7418c58f1c22SToby Isaac 7419c58f1c22SToby Isaac Input Parameters: 7420bb7acecfSBarry Smith + dm - The `DM` object 7421c58f1c22SToby Isaac . name - The label name 7422bb7acecfSBarry Smith - output - `PETSC_TRUE` to save the label to the viewer 7423c58f1c22SToby Isaac 7424c58f1c22SToby Isaac Level: developer 7425c58f1c22SToby Isaac 74261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetOutputFlag()`, `DMGetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7427c58f1c22SToby Isaac @*/ 7428d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelOutput(DM dm, const char name[], PetscBool output) 7429d71ae5a4SJacob Faibussowitsch { 74305d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7431d67d17b1SMatthew G. Knepley const char *lname; 7432c58f1c22SToby Isaac 7433c58f1c22SToby Isaac PetscFunctionBegin; 7434c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 74354f572ea9SToby Isaac PetscAssertPointer(name, 2); 7436c58f1c22SToby Isaac while (next) { 7437c58f1c22SToby Isaac PetscBool flg; 7438c58f1c22SToby Isaac 74399566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 74409566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 74419371c9d4SSatish Balay if (flg) { 74429371c9d4SSatish Balay next->output = output; 74433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 74449371c9d4SSatish Balay } 7445c58f1c22SToby Isaac next = next->next; 7446c58f1c22SToby Isaac } 744798921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7448c58f1c22SToby Isaac } 7449c58f1c22SToby Isaac 7450c58f1c22SToby Isaac /*@ 7451bb7acecfSBarry Smith DMCopyLabels - Copy labels from one `DM` mesh to another `DM` with a superset of the points 7452c58f1c22SToby Isaac 745320f4b53cSBarry Smith Collective 7454c58f1c22SToby Isaac 7455d8d19677SJose E. Roman Input Parameters: 7456bb7acecfSBarry Smith + dmA - The `DM` object with initial labels 7457bb7acecfSBarry Smith . dmB - The `DM` object to which labels are copied 7458bb7acecfSBarry Smith . mode - Copy labels by pointers (`PETSC_OWN_POINTER`) or duplicate them (`PETSC_COPY_VALUES`) 7459bb7acecfSBarry Smith . all - Copy all labels including "depth", "dim", and "celltype" (`PETSC_TRUE`) which are otherwise ignored (`PETSC_FALSE`) 7460bb7acecfSBarry Smith - emode - How to behave when a `DMLabel` in the source and destination `DM`s with the same name is encountered (see `DMCopyLabelsMode`) 7461c58f1c22SToby Isaac 7462c58f1c22SToby Isaac Level: intermediate 7463c58f1c22SToby Isaac 7464bb7acecfSBarry Smith Note: 74652cbb9b06SVaclav Hapla This is typically used when interpolating or otherwise adding to a mesh, or testing. 7466c58f1c22SToby Isaac 74671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode` 7468c58f1c22SToby Isaac @*/ 7469d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyLabels(DM dmA, DM dmB, PetscCopyMode mode, PetscBool all, DMCopyLabelsMode emode) 7470d71ae5a4SJacob Faibussowitsch { 74712cbb9b06SVaclav Hapla DMLabel label, labelNew, labelOld; 7472c58f1c22SToby Isaac const char *name; 7473c58f1c22SToby Isaac PetscBool flg; 74745d80c0bfSVaclav Hapla DMLabelLink link; 7475c58f1c22SToby Isaac 74765d80c0bfSVaclav Hapla PetscFunctionBegin; 74775d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 74785d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 74795d80c0bfSVaclav Hapla PetscValidLogicalCollectiveEnum(dmA, mode, 3); 74805d80c0bfSVaclav Hapla PetscValidLogicalCollectiveBool(dmA, all, 4); 74817a8be351SBarry Smith PetscCheck(mode != PETSC_USE_POINTER, PetscObjectComm((PetscObject)dmA), PETSC_ERR_SUP, "PETSC_USE_POINTER not supported for objects"); 74823ba16761SJacob Faibussowitsch if (dmA == dmB) PetscFunctionReturn(PETSC_SUCCESS); 74835d80c0bfSVaclav Hapla for (link = dmA->labels; link; link = link->next) { 74845d80c0bfSVaclav Hapla label = link->label; 74859566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 74865d80c0bfSVaclav Hapla if (!all) { 74879566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &flg)); 7488c58f1c22SToby Isaac if (flg) continue; 74899566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "dim", &flg)); 74907d5acc75SStefano Zampini if (flg) continue; 74919566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &flg)); 7492ba2698f1SMatthew G. Knepley if (flg) continue; 74935d80c0bfSVaclav Hapla } 74949566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmB, name, &labelOld)); 74952cbb9b06SVaclav Hapla if (labelOld) { 74962cbb9b06SVaclav Hapla switch (emode) { 7497d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_KEEP: 7498d71ae5a4SJacob Faibussowitsch continue; 7499d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_REPLACE: 7500d71ae5a4SJacob Faibussowitsch PetscCall(DMRemoveLabelBySelf(dmB, &labelOld, PETSC_TRUE)); 7501d71ae5a4SJacob Faibussowitsch break; 7502d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_FAIL: 7503d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in destination DM", name); 7504d71ae5a4SJacob Faibussowitsch default: 7505d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Unhandled DMCopyLabelsMode %d", (int)emode); 75062cbb9b06SVaclav Hapla } 75072cbb9b06SVaclav Hapla } 75085d80c0bfSVaclav Hapla if (mode == PETSC_COPY_VALUES) { 75099566063dSJacob Faibussowitsch PetscCall(DMLabelDuplicate(label, &labelNew)); 75105d80c0bfSVaclav Hapla } else { 75115d80c0bfSVaclav Hapla labelNew = label; 75125d80c0bfSVaclav Hapla } 75139566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dmB, labelNew)); 75149566063dSJacob Faibussowitsch if (mode == PETSC_COPY_VALUES) PetscCall(DMLabelDestroy(&labelNew)); 7515c58f1c22SToby Isaac } 75163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7517c58f1c22SToby Isaac } 7518461a15a0SLisandro Dalcin 7519609dae6eSVaclav Hapla /*@C 7520b4028c23SStefano Zampini DMCompareLabels - Compare labels between two `DM` objects 7521609dae6eSVaclav Hapla 752220f4b53cSBarry Smith Collective; No Fortran Support 7523609dae6eSVaclav Hapla 7524609dae6eSVaclav Hapla Input Parameters: 7525bb7acecfSBarry Smith + dm0 - First `DM` object 7526bb7acecfSBarry Smith - dm1 - Second `DM` object 7527609dae6eSVaclav Hapla 7528a4e35b19SJacob Faibussowitsch Output Parameters: 75295efe38ccSVaclav Hapla + equal - (Optional) Flag whether labels of dm0 and dm1 are the same 753020f4b53cSBarry Smith - message - (Optional) Message describing the difference, or `NULL` if there is no difference 7531609dae6eSVaclav Hapla 7532609dae6eSVaclav Hapla Level: intermediate 7533609dae6eSVaclav Hapla 7534609dae6eSVaclav Hapla Notes: 7535bb7acecfSBarry Smith The output flag equal will be the same on all processes. 7536bb7acecfSBarry Smith 753720f4b53cSBarry Smith If equal is passed as `NULL` and difference is found, an error is thrown on all processes. 7538bb7acecfSBarry Smith 753920f4b53cSBarry Smith Make sure to pass equal is `NULL` on all processes or none of them. 7540609dae6eSVaclav Hapla 75415efe38ccSVaclav Hapla The output message is set independently on each rank. 7542bb7acecfSBarry Smith 7543bb7acecfSBarry Smith message must be freed with `PetscFree()` 7544bb7acecfSBarry Smith 754520f4b53cSBarry Smith If message is passed as `NULL` and a difference is found, the difference description is printed to stderr in synchronized manner. 7546bb7acecfSBarry Smith 754720f4b53cSBarry Smith Make sure to pass message as `NULL` on all processes or no processes. 7548609dae6eSVaclav Hapla 7549609dae6eSVaclav Hapla Labels are matched by name. If the number of labels and their names are equal, 7550bb7acecfSBarry Smith `DMLabelCompare()` is used to compare each pair of labels with the same name. 7551609dae6eSVaclav Hapla 75521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`, `DMLabelCompare()` 7553609dae6eSVaclav Hapla @*/ 7554d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompareLabels(DM dm0, DM dm1, PetscBool *equal, char **message) 7555d71ae5a4SJacob Faibussowitsch { 75565efe38ccSVaclav Hapla PetscInt n, i; 7557609dae6eSVaclav Hapla char msg[PETSC_MAX_PATH_LEN] = ""; 75585efe38ccSVaclav Hapla PetscBool eq; 7559609dae6eSVaclav Hapla MPI_Comm comm; 75605efe38ccSVaclav Hapla PetscMPIInt rank; 7561609dae6eSVaclav Hapla 7562609dae6eSVaclav Hapla PetscFunctionBegin; 7563609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm0, DM_CLASSID, 1); 7564609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm1, DM_CLASSID, 2); 7565609dae6eSVaclav Hapla PetscCheckSameComm(dm0, 1, dm1, 2); 75664f572ea9SToby Isaac if (equal) PetscAssertPointer(equal, 3); 75674f572ea9SToby Isaac if (message) PetscAssertPointer(message, 4); 75689566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm0, &comm)); 75699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 75705efe38ccSVaclav Hapla { 75715efe38ccSVaclav Hapla PetscInt n1; 75725efe38ccSVaclav Hapla 75739566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm0, &n)); 75749566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm1, &n1)); 75755efe38ccSVaclav Hapla eq = (PetscBool)(n == n1); 757648a46eb9SPierre Jolivet if (!eq) PetscCall(PetscSNPrintf(msg, sizeof(msg), "Number of labels in dm0 = %" PetscInt_FMT " != %" PetscInt_FMT " = Number of labels in dm1", n, n1)); 7577712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 75785efe38ccSVaclav Hapla if (!eq) goto finish; 75795efe38ccSVaclav Hapla } 75805efe38ccSVaclav Hapla for (i = 0; i < n; i++) { 7581609dae6eSVaclav Hapla DMLabel l0, l1; 7582609dae6eSVaclav Hapla const char *name; 7583609dae6eSVaclav Hapla char *msgInner; 7584609dae6eSVaclav Hapla 7585609dae6eSVaclav Hapla /* Ignore label order */ 75869566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm0, i, &l0)); 75879566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)l0, &name)); 75889566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm1, name, &l1)); 7589609dae6eSVaclav Hapla if (!l1) { 759063a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(msg, sizeof(msg), "Label \"%s\" (#%" PetscInt_FMT " in dm0) not found in dm1", name, i)); 75915efe38ccSVaclav Hapla eq = PETSC_FALSE; 75925efe38ccSVaclav Hapla break; 7593609dae6eSVaclav Hapla } 75949566063dSJacob Faibussowitsch PetscCall(DMLabelCompare(comm, l0, l1, &eq, &msgInner)); 75959566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(msg, msgInner, sizeof(msg))); 75969566063dSJacob Faibussowitsch PetscCall(PetscFree(msgInner)); 75975efe38ccSVaclav Hapla if (!eq) break; 7598609dae6eSVaclav Hapla } 7599712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 7600609dae6eSVaclav Hapla finish: 76015efe38ccSVaclav Hapla /* If message output arg not set, print to stderr */ 7602609dae6eSVaclav Hapla if (message) { 7603609dae6eSVaclav Hapla *message = NULL; 760448a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscStrallocpy(msg, message)); 76055efe38ccSVaclav Hapla } else { 760648a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscSynchronizedFPrintf(comm, PETSC_STDERR, "[%d] %s\n", rank, msg)); 76079566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, PETSC_STDERR)); 76085efe38ccSVaclav Hapla } 76095efe38ccSVaclav Hapla /* If same output arg not ser and labels are not equal, throw error */ 76105efe38ccSVaclav Hapla if (equal) *equal = eq; 76117a8be351SBarry Smith else PetscCheck(eq, comm, PETSC_ERR_ARG_INCOMP, "DMLabels are not the same in dm0 and dm1"); 76123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7613609dae6eSVaclav Hapla } 7614609dae6eSVaclav Hapla 7615d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue_Fast(DM dm, DMLabel *label, const char name[], PetscInt point, PetscInt value) 7616d71ae5a4SJacob Faibussowitsch { 7617461a15a0SLisandro Dalcin PetscFunctionBegin; 76184f572ea9SToby Isaac PetscAssertPointer(label, 2); 7619461a15a0SLisandro Dalcin if (!*label) { 76209566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 76219566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, label)); 7622461a15a0SLisandro Dalcin } 76239566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(*label, point, value)); 76243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7625461a15a0SLisandro Dalcin } 7626461a15a0SLisandro Dalcin 76270fdc7489SMatthew Knepley /* 76280fdc7489SMatthew Knepley Many mesh programs, such as Triangle and TetGen, allow only a single label for each mesh point. Therefore, we would 76290fdc7489SMatthew Knepley like to encode all label IDs using a single, universal label. We can do this by assigning an integer to every 76300fdc7489SMatthew Knepley (label, id) pair in the DM. 76310fdc7489SMatthew Knepley 76320fdc7489SMatthew Knepley However, a mesh point can have multiple labels, so we must separate all these values. We will assign a bit range to 76330fdc7489SMatthew Knepley each label. 76340fdc7489SMatthew Knepley */ 7635d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreate(DM dm, DMUniversalLabel *universal) 7636d71ae5a4SJacob Faibussowitsch { 76370fdc7489SMatthew Knepley DMUniversalLabel ul; 76380fdc7489SMatthew Knepley PetscBool *active; 76390fdc7489SMatthew Knepley PetscInt pStart, pEnd, p, Nl, l, m; 76400fdc7489SMatthew Knepley 76410fdc7489SMatthew Knepley PetscFunctionBegin; 76429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &ul)); 76439566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "universal", &ul->label)); 76449566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 76459566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Nl, &active)); 76460fdc7489SMatthew Knepley ul->Nl = 0; 76470fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 76480fdc7489SMatthew Knepley PetscBool isdepth, iscelltype; 76490fdc7489SMatthew Knepley const char *name; 76500fdc7489SMatthew Knepley 76519566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 76529566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "depth", 6, &isdepth)); 76539566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "celltype", 9, &iscelltype)); 76540fdc7489SMatthew Knepley active[l] = !(isdepth || iscelltype) ? PETSC_TRUE : PETSC_FALSE; 76550fdc7489SMatthew Knepley if (active[l]) ++ul->Nl; 76560fdc7489SMatthew Knepley } 76579566063dSJacob Faibussowitsch PetscCall(PetscCalloc5(ul->Nl, &ul->names, ul->Nl, &ul->indices, ul->Nl + 1, &ul->offsets, ul->Nl + 1, &ul->bits, ul->Nl, &ul->masks)); 76580fdc7489SMatthew Knepley ul->Nv = 0; 76590fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 76600fdc7489SMatthew Knepley DMLabel label; 76610fdc7489SMatthew Knepley PetscInt nv; 76620fdc7489SMatthew Knepley const char *name; 76630fdc7489SMatthew Knepley 76640fdc7489SMatthew Knepley if (!active[l]) continue; 76659566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 76669566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 76679566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 76689566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(name, &ul->names[m])); 76690fdc7489SMatthew Knepley ul->indices[m] = l; 76700fdc7489SMatthew Knepley ul->Nv += nv; 76710fdc7489SMatthew Knepley ul->offsets[m + 1] = nv; 76720fdc7489SMatthew Knepley ul->bits[m + 1] = PetscCeilReal(PetscLog2Real(nv + 1)); 76730fdc7489SMatthew Knepley ++m; 76740fdc7489SMatthew Knepley } 76750fdc7489SMatthew Knepley for (l = 1; l <= ul->Nl; ++l) { 76760fdc7489SMatthew Knepley ul->offsets[l] = ul->offsets[l - 1] + ul->offsets[l]; 76770fdc7489SMatthew Knepley ul->bits[l] = ul->bits[l - 1] + ul->bits[l]; 76780fdc7489SMatthew Knepley } 76790fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 76800fdc7489SMatthew Knepley PetscInt b; 76810fdc7489SMatthew Knepley 76820fdc7489SMatthew Knepley ul->masks[l] = 0; 76830fdc7489SMatthew Knepley for (b = ul->bits[l]; b < ul->bits[l + 1]; ++b) ul->masks[l] |= 1 << b; 76840fdc7489SMatthew Knepley } 76859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ul->Nv, &ul->values)); 76860fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 76870fdc7489SMatthew Knepley DMLabel label; 76880fdc7489SMatthew Knepley IS valueIS; 76890fdc7489SMatthew Knepley const PetscInt *varr; 76900fdc7489SMatthew Knepley PetscInt nv, v; 76910fdc7489SMatthew Knepley 76920fdc7489SMatthew Knepley if (!active[l]) continue; 76939566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 76949566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 76959566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 76969566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &varr)); 7697ad540459SPierre Jolivet for (v = 0; v < nv; ++v) ul->values[ul->offsets[m] + v] = varr[v]; 76989566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &varr)); 76999566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 77009566063dSJacob Faibussowitsch PetscCall(PetscSortInt(nv, &ul->values[ul->offsets[m]])); 77010fdc7489SMatthew Knepley ++m; 77020fdc7489SMatthew Knepley } 77039566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 77040fdc7489SMatthew Knepley for (p = pStart; p < pEnd; ++p) { 77050fdc7489SMatthew Knepley PetscInt uval = 0; 77060fdc7489SMatthew Knepley PetscBool marked = PETSC_FALSE; 77070fdc7489SMatthew Knepley 77080fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 77090fdc7489SMatthew Knepley DMLabel label; 77100649b39aSStefano Zampini PetscInt val, defval, loc, nv; 77110fdc7489SMatthew Knepley 77120fdc7489SMatthew Knepley if (!active[l]) continue; 77139566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 77149566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, p, &val)); 77159566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defval)); 77169371c9d4SSatish Balay if (val == defval) { 77179371c9d4SSatish Balay ++m; 77189371c9d4SSatish Balay continue; 77199371c9d4SSatish Balay } 77200649b39aSStefano Zampini nv = ul->offsets[m + 1] - ul->offsets[m]; 77210fdc7489SMatthew Knepley marked = PETSC_TRUE; 77229566063dSJacob Faibussowitsch PetscCall(PetscFindInt(val, nv, &ul->values[ul->offsets[m]], &loc)); 772363a3b9bcSJacob Faibussowitsch PetscCheck(loc >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Label value %" PetscInt_FMT " not found in compression array", val); 77240fdc7489SMatthew Knepley uval += (loc + 1) << ul->bits[m]; 77250fdc7489SMatthew Knepley ++m; 77260fdc7489SMatthew Knepley } 77279566063dSJacob Faibussowitsch if (marked) PetscCall(DMLabelSetValue(ul->label, p, uval)); 77280fdc7489SMatthew Knepley } 77299566063dSJacob Faibussowitsch PetscCall(PetscFree(active)); 77300fdc7489SMatthew Knepley *universal = ul; 77313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77320fdc7489SMatthew Knepley } 77330fdc7489SMatthew Knepley 7734d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelDestroy(DMUniversalLabel *universal) 7735d71ae5a4SJacob Faibussowitsch { 77360fdc7489SMatthew Knepley PetscInt l; 77370fdc7489SMatthew Knepley 77380fdc7489SMatthew Knepley PetscFunctionBegin; 77399566063dSJacob Faibussowitsch for (l = 0; l < (*universal)->Nl; ++l) PetscCall(PetscFree((*universal)->names[l])); 77409566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&(*universal)->label)); 77419566063dSJacob Faibussowitsch PetscCall(PetscFree5((*universal)->names, (*universal)->indices, (*universal)->offsets, (*universal)->bits, (*universal)->masks)); 77429566063dSJacob Faibussowitsch PetscCall(PetscFree((*universal)->values)); 77439566063dSJacob Faibussowitsch PetscCall(PetscFree(*universal)); 77440fdc7489SMatthew Knepley *universal = NULL; 77453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77460fdc7489SMatthew Knepley } 77470fdc7489SMatthew Knepley 7748d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelGetLabel(DMUniversalLabel ul, DMLabel *ulabel) 7749d71ae5a4SJacob Faibussowitsch { 77500fdc7489SMatthew Knepley PetscFunctionBegin; 77514f572ea9SToby Isaac PetscAssertPointer(ulabel, 2); 77520fdc7489SMatthew Knepley *ulabel = ul->label; 77533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77540fdc7489SMatthew Knepley } 77550fdc7489SMatthew Knepley 7756d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreateLabels(DMUniversalLabel ul, PetscBool preserveOrder, DM dm) 7757d71ae5a4SJacob Faibussowitsch { 77580fdc7489SMatthew Knepley PetscInt Nl = ul->Nl, l; 77590fdc7489SMatthew Knepley 77600fdc7489SMatthew Knepley PetscFunctionBegin; 7761064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dm, DM_CLASSID, 3); 77620fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 77639566063dSJacob Faibussowitsch if (preserveOrder) PetscCall(DMCreateLabelAtIndex(dm, ul->indices[l], ul->names[l])); 77649566063dSJacob Faibussowitsch else PetscCall(DMCreateLabel(dm, ul->names[l])); 77650fdc7489SMatthew Knepley } 77660fdc7489SMatthew Knepley if (preserveOrder) { 77670fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 77680fdc7489SMatthew Knepley const char *name; 77690fdc7489SMatthew Knepley PetscBool match; 77700fdc7489SMatthew Knepley 77719566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, ul->indices[l], &name)); 77729566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, ul->names[l], &match)); 777363a3b9bcSJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Label %" PetscInt_FMT " name %s does not match new name %s", l, name, ul->names[l]); 77740fdc7489SMatthew Knepley } 77750fdc7489SMatthew Knepley } 77763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77770fdc7489SMatthew Knepley } 77780fdc7489SMatthew Knepley 7779d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelSetLabelValue(DMUniversalLabel ul, DM dm, PetscBool useIndex, PetscInt p, PetscInt value) 7780d71ae5a4SJacob Faibussowitsch { 77810fdc7489SMatthew Knepley PetscInt l; 77820fdc7489SMatthew Knepley 77830fdc7489SMatthew Knepley PetscFunctionBegin; 77840fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 77850fdc7489SMatthew Knepley DMLabel label; 77860fdc7489SMatthew Knepley PetscInt lval = (value & ul->masks[l]) >> ul->bits[l]; 77870fdc7489SMatthew Knepley 77880fdc7489SMatthew Knepley if (lval) { 77899566063dSJacob Faibussowitsch if (useIndex) PetscCall(DMGetLabelByNum(dm, ul->indices[l], &label)); 77909566063dSJacob Faibussowitsch else PetscCall(DMGetLabel(dm, ul->names[l], &label)); 77919566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, ul->values[ul->offsets[l] + lval - 1])); 77920fdc7489SMatthew Knepley } 77930fdc7489SMatthew Knepley } 77943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77950fdc7489SMatthew Knepley } 7796a8fb8f29SToby Isaac 7797a8fb8f29SToby Isaac /*@ 7798bb7acecfSBarry Smith DMGetCoarseDM - Get the coarse `DM`from which this `DM` was obtained by refinement 7799bb7acecfSBarry Smith 780020f4b53cSBarry Smith Not Collective 7801a8fb8f29SToby Isaac 7802a8fb8f29SToby Isaac Input Parameter: 7803bb7acecfSBarry Smith . dm - The `DM` object 7804a8fb8f29SToby Isaac 7805a8fb8f29SToby Isaac Output Parameter: 7806bb7acecfSBarry Smith . cdm - The coarse `DM` 7807a8fb8f29SToby Isaac 7808a8fb8f29SToby Isaac Level: intermediate 7809a8fb8f29SToby Isaac 78101cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetCoarseDM()`, `DMCoarsen()` 7811a8fb8f29SToby Isaac @*/ 7812d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarseDM(DM dm, DM *cdm) 7813d71ae5a4SJacob Faibussowitsch { 7814a8fb8f29SToby Isaac PetscFunctionBegin; 7815a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 78164f572ea9SToby Isaac PetscAssertPointer(cdm, 2); 7817a8fb8f29SToby Isaac *cdm = dm->coarseMesh; 78183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7819a8fb8f29SToby Isaac } 7820a8fb8f29SToby Isaac 7821a8fb8f29SToby Isaac /*@ 7822bb7acecfSBarry Smith DMSetCoarseDM - Set the coarse `DM` from which this `DM` was obtained by refinement 7823a8fb8f29SToby Isaac 7824a8fb8f29SToby Isaac Input Parameters: 7825bb7acecfSBarry Smith + dm - The `DM` object 7826bb7acecfSBarry Smith - cdm - The coarse `DM` 7827a8fb8f29SToby Isaac 7828a8fb8f29SToby Isaac Level: intermediate 7829a8fb8f29SToby Isaac 7830bb7acecfSBarry Smith Note: 7831bb7acecfSBarry Smith Normally this is set automatically by `DMRefine()` 7832bb7acecfSBarry Smith 78331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCoarseDM()`, `DMCoarsen()`, `DMSetRefine()`, `DMSetFineDM()` 7834a8fb8f29SToby Isaac @*/ 7835d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarseDM(DM dm, DM cdm) 7836d71ae5a4SJacob Faibussowitsch { 7837a8fb8f29SToby Isaac PetscFunctionBegin; 7838a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7839a8fb8f29SToby Isaac if (cdm) PetscValidHeaderSpecific(cdm, DM_CLASSID, 2); 784089d734beSBarry Smith if (dm == cdm) cdm = NULL; 78419566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)cdm)); 78429566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->coarseMesh)); 7843a8fb8f29SToby Isaac dm->coarseMesh = cdm; 78443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7845a8fb8f29SToby Isaac } 7846a8fb8f29SToby Isaac 784788bdff64SToby Isaac /*@ 7848bb7acecfSBarry Smith DMGetFineDM - Get the fine mesh from which this `DM` was obtained by coarsening 784988bdff64SToby Isaac 785088bdff64SToby Isaac Input Parameter: 7851bb7acecfSBarry Smith . dm - The `DM` object 785288bdff64SToby Isaac 785388bdff64SToby Isaac Output Parameter: 7854bb7acecfSBarry Smith . fdm - The fine `DM` 785588bdff64SToby Isaac 785688bdff64SToby Isaac Level: intermediate 785788bdff64SToby Isaac 78581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetFineDM()`, `DMCoarsen()`, `DMRefine()` 785988bdff64SToby Isaac @*/ 7860d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFineDM(DM dm, DM *fdm) 7861d71ae5a4SJacob Faibussowitsch { 786288bdff64SToby Isaac PetscFunctionBegin; 786388bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 78644f572ea9SToby Isaac PetscAssertPointer(fdm, 2); 786588bdff64SToby Isaac *fdm = dm->fineMesh; 78663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 786788bdff64SToby Isaac } 786888bdff64SToby Isaac 786988bdff64SToby Isaac /*@ 7870bb7acecfSBarry Smith DMSetFineDM - Set the fine mesh from which this was obtained by coarsening 787188bdff64SToby Isaac 787288bdff64SToby Isaac Input Parameters: 7873bb7acecfSBarry Smith + dm - The `DM` object 7874bb7acecfSBarry Smith - fdm - The fine `DM` 787588bdff64SToby Isaac 7876bb7acecfSBarry Smith Level: developer 787788bdff64SToby Isaac 7878bb7acecfSBarry Smith Note: 7879bb7acecfSBarry Smith Normally this is set automatically by `DMCoarsen()` 7880bb7acecfSBarry Smith 78811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFineDM()`, `DMCoarsen()`, `DMRefine()` 788288bdff64SToby Isaac @*/ 7883d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFineDM(DM dm, DM fdm) 7884d71ae5a4SJacob Faibussowitsch { 788588bdff64SToby Isaac PetscFunctionBegin; 788688bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 788788bdff64SToby Isaac if (fdm) PetscValidHeaderSpecific(fdm, DM_CLASSID, 2); 788889d734beSBarry Smith if (dm == fdm) fdm = NULL; 78899566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fdm)); 78909566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->fineMesh)); 789188bdff64SToby Isaac dm->fineMesh = fdm; 78923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 789388bdff64SToby Isaac } 789488bdff64SToby Isaac 7895a6ba4734SToby Isaac /*@C 7896bb7acecfSBarry Smith DMAddBoundary - Add a boundary condition to a model represented by a `DM` 7897a6ba4734SToby Isaac 789820f4b53cSBarry Smith Collective 7899783e2ec8SMatthew G. Knepley 7900a6ba4734SToby Isaac Input Parameters: 7901bb7acecfSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 7902bb7acecfSBarry Smith . type - The type of condition, e.g. `DM_BC_ESSENTIAL_ANALYTIC`, `DM_BC_ESSENTIAL_FIELD` (Dirichlet), or `DM_BC_NATURAL` (Neumann) 7903a6ba4734SToby Isaac . name - The BC name 790445480ffeSMatthew G. Knepley . label - The label defining constrained points 7905bb7acecfSBarry Smith . Nv - The number of `DMLabel` values for constrained points 790645480ffeSMatthew G. Knepley . values - An array of values for constrained points 7907a6ba4734SToby Isaac . field - The field to constrain 790845480ffeSMatthew G. Knepley . Nc - The number of constrained field components (0 will constrain all fields) 7909a6ba4734SToby Isaac . comps - An array of constrained component numbers 7910a6ba4734SToby Isaac . bcFunc - A pointwise function giving boundary values 791156cf3b9cSMatthew G. Knepley . bcFunc_t - A pointwise function giving the time deriative of the boundary values, or NULL 7912a6ba4734SToby Isaac - ctx - An optional user context for bcFunc 7913a6ba4734SToby Isaac 791445480ffeSMatthew G. Knepley Output Parameter: 791545480ffeSMatthew G. Knepley . bd - (Optional) Boundary number 791645480ffeSMatthew G. Knepley 7917a6ba4734SToby Isaac Options Database Keys: 7918a6ba4734SToby Isaac + -bc_<boundary name> <num> - Overrides the boundary ids 7919a6ba4734SToby Isaac - -bc_<boundary name>_comp <num> - Overrides the boundary components 7920a6ba4734SToby Isaac 792120f4b53cSBarry Smith Level: intermediate 792220f4b53cSBarry Smith 7923bb7acecfSBarry Smith Notes: 792437fdd005SBarry Smith Both bcFunc abd bcFunc_t will depend on the boundary condition type. If the type if `DM_BC_ESSENTIAL`, then the calling sequence is\: 792573ff1848SBarry Smith .vb 792673ff1848SBarry Smith void bcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[]) 792773ff1848SBarry Smith .ve 792856cf3b9cSMatthew G. Knepley 7929a4e35b19SJacob Faibussowitsch If the type is `DM_BC_ESSENTIAL_FIELD` or other _FIELD value, then the calling sequence is\: 793056cf3b9cSMatthew G. Knepley 793120f4b53cSBarry Smith .vb 793220f4b53cSBarry Smith void bcFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux, 793320f4b53cSBarry Smith const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 793420f4b53cSBarry Smith const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 793520f4b53cSBarry Smith PetscReal time, const PetscReal x[], PetscScalar bcval[]) 793620f4b53cSBarry Smith .ve 793756cf3b9cSMatthew G. Knepley + dim - the spatial dimension 793856cf3b9cSMatthew G. Knepley . Nf - the number of fields 793956cf3b9cSMatthew G. Knepley . uOff - the offset into u[] and u_t[] for each field 794056cf3b9cSMatthew G. Knepley . uOff_x - the offset into u_x[] for each field 794156cf3b9cSMatthew G. Knepley . u - each field evaluated at the current point 794256cf3b9cSMatthew G. Knepley . u_t - the time derivative of each field evaluated at the current point 794356cf3b9cSMatthew G. Knepley . u_x - the gradient of each field evaluated at the current point 794456cf3b9cSMatthew G. Knepley . aOff - the offset into a[] and a_t[] for each auxiliary field 794556cf3b9cSMatthew G. Knepley . aOff_x - the offset into a_x[] for each auxiliary field 794656cf3b9cSMatthew G. Knepley . a - each auxiliary field evaluated at the current point 794756cf3b9cSMatthew G. Knepley . a_t - the time derivative of each auxiliary field evaluated at the current point 794856cf3b9cSMatthew G. Knepley . a_x - the gradient of auxiliary each field evaluated at the current point 794956cf3b9cSMatthew G. Knepley . t - current time 795056cf3b9cSMatthew G. Knepley . x - coordinates of the current point 795156cf3b9cSMatthew G. Knepley . numConstants - number of constant parameters 795256cf3b9cSMatthew G. Knepley . constants - constant parameters 795356cf3b9cSMatthew G. Knepley - bcval - output values at the current point 795456cf3b9cSMatthew G. Knepley 79551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DSGetBoundary()`, `PetscDSAddBoundary()` 7956a6ba4734SToby Isaac @*/ 7957d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddBoundary(DM dm, DMBoundaryConditionType type, const char name[], DMLabel label, PetscInt Nv, const PetscInt values[], PetscInt field, PetscInt Nc, const PetscInt comps[], void (*bcFunc)(void), void (*bcFunc_t)(void), void *ctx, PetscInt *bd) 7958d71ae5a4SJacob Faibussowitsch { 7959e5e52638SMatthew G. Knepley PetscDS ds; 7960a6ba4734SToby Isaac 7961a6ba4734SToby Isaac PetscFunctionBegin; 7962a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7963783e2ec8SMatthew G. Knepley PetscValidLogicalCollectiveEnum(dm, type, 2); 796445480ffeSMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 4); 796545480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nv, 5); 796645480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, field, 7); 796745480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 8); 796801a5d20dSJed Brown PetscCheck(!dm->localSection, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot add boundary to DM after creating local section"); 79699566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 7970799db056SMatthew G. Knepley /* Complete label */ 7971799db056SMatthew G. Knepley if (label) { 7972799db056SMatthew G. Knepley PetscObject obj; 7973799db056SMatthew G. Knepley PetscClassId id; 7974799db056SMatthew G. Knepley 7975799db056SMatthew G. Knepley PetscCall(DMGetField(dm, field, NULL, &obj)); 7976799db056SMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 7977799db056SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 7978799db056SMatthew G. Knepley DM plex; 7979799db056SMatthew G. Knepley 7980799db056SMatthew G. Knepley PetscCall(DMConvert(dm, DMPLEX, &plex)); 7981799db056SMatthew G. Knepley if (plex) PetscCall(DMPlexLabelComplete(plex, label)); 7982799db056SMatthew G. Knepley PetscCall(DMDestroy(&plex)); 7983799db056SMatthew G. Knepley } 7984799db056SMatthew G. Knepley } 79859566063dSJacob Faibussowitsch PetscCall(PetscDSAddBoundary(ds, type, name, label, Nv, values, field, Nc, comps, bcFunc, bcFunc_t, ctx, bd)); 79863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7987a6ba4734SToby Isaac } 7988a6ba4734SToby Isaac 798945480ffeSMatthew G. Knepley /* TODO Remove this since now the structures are the same */ 7990d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPopulateBoundary(DM dm) 7991d71ae5a4SJacob Faibussowitsch { 7992e5e52638SMatthew G. Knepley PetscDS ds; 7993dff059c6SToby Isaac DMBoundary *lastnext; 7994e6f8dbb6SToby Isaac DSBoundary dsbound; 7995e6f8dbb6SToby Isaac 7996e6f8dbb6SToby Isaac PetscFunctionBegin; 79979566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 7998e5e52638SMatthew G. Knepley dsbound = ds->boundary; 799947a1f5adSToby Isaac if (dm->boundary) { 800047a1f5adSToby Isaac DMBoundary next = dm->boundary; 800147a1f5adSToby Isaac 800247a1f5adSToby Isaac /* quick check to see if the PetscDS has changed */ 80033ba16761SJacob Faibussowitsch if (next->dsboundary == dsbound) PetscFunctionReturn(PETSC_SUCCESS); 800447a1f5adSToby Isaac /* the PetscDS has changed: tear down and rebuild */ 800547a1f5adSToby Isaac while (next) { 800647a1f5adSToby Isaac DMBoundary b = next; 800747a1f5adSToby Isaac 800847a1f5adSToby Isaac next = b->next; 80099566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 8010a6ba4734SToby Isaac } 801147a1f5adSToby Isaac dm->boundary = NULL; 8012a6ba4734SToby Isaac } 801347a1f5adSToby Isaac 8014f4f49eeaSPierre Jolivet lastnext = &dm->boundary; 8015e6f8dbb6SToby Isaac while (dsbound) { 8016e6f8dbb6SToby Isaac DMBoundary dmbound; 8017e6f8dbb6SToby Isaac 80189566063dSJacob Faibussowitsch PetscCall(PetscNew(&dmbound)); 8019e6f8dbb6SToby Isaac dmbound->dsboundary = dsbound; 802045480ffeSMatthew G. Knepley dmbound->label = dsbound->label; 802147a1f5adSToby Isaac /* push on the back instead of the front so that it is in the same order as in the PetscDS */ 8022dff059c6SToby Isaac *lastnext = dmbound; 8023f4f49eeaSPierre Jolivet lastnext = &dmbound->next; 8024dff059c6SToby Isaac dsbound = dsbound->next; 8025a6ba4734SToby Isaac } 80263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8027a6ba4734SToby Isaac } 8028a6ba4734SToby Isaac 8029bb7acecfSBarry Smith /* TODO: missing manual page */ 8030d71ae5a4SJacob Faibussowitsch PetscErrorCode DMIsBoundaryPoint(DM dm, PetscInt point, PetscBool *isBd) 8031d71ae5a4SJacob Faibussowitsch { 8032b95f2879SToby Isaac DMBoundary b; 8033a6ba4734SToby Isaac 8034a6ba4734SToby Isaac PetscFunctionBegin; 8035a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 80364f572ea9SToby Isaac PetscAssertPointer(isBd, 3); 8037a6ba4734SToby Isaac *isBd = PETSC_FALSE; 80389566063dSJacob Faibussowitsch PetscCall(DMPopulateBoundary(dm)); 8039b95f2879SToby Isaac b = dm->boundary; 8040a6ba4734SToby Isaac while (b && !(*isBd)) { 8041e6f8dbb6SToby Isaac DMLabel label = b->label; 8042e6f8dbb6SToby Isaac DSBoundary dsb = b->dsboundary; 8043a6ba4734SToby Isaac PetscInt i; 8044a6ba4734SToby Isaac 804545480ffeSMatthew G. Knepley if (label) { 80469566063dSJacob Faibussowitsch for (i = 0; i < dsb->Nv && !(*isBd); ++i) PetscCall(DMLabelStratumHasPoint(label, dsb->values[i], point, isBd)); 8047a6ba4734SToby Isaac } 8048a6ba4734SToby Isaac b = b->next; 8049a6ba4734SToby Isaac } 80503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8051a6ba4734SToby Isaac } 80524d6f44ffSToby Isaac 80534d6f44ffSToby Isaac /*@C 8054bb7acecfSBarry Smith DMProjectFunction - This projects the given function into the function space provided by a `DM`, putting the coefficients in a global vector. 8055a6e0b375SMatthew G. Knepley 805620f4b53cSBarry Smith Collective 80574d6f44ffSToby Isaac 80584d6f44ffSToby Isaac Input Parameters: 8059bb7acecfSBarry Smith + dm - The `DM` 80600709b2feSToby Isaac . time - The time 80614d6f44ffSToby Isaac . funcs - The coordinate functions to evaluate, one per field 80624d6f44ffSToby Isaac . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 80634d6f44ffSToby Isaac - mode - The insertion mode for values 80644d6f44ffSToby Isaac 80654d6f44ffSToby Isaac Output Parameter: 80664d6f44ffSToby Isaac . X - vector 80674d6f44ffSToby Isaac 806820f4b53cSBarry Smith Calling sequence of `funcs`: 80694d6f44ffSToby Isaac + dim - The spatial dimension 80708ec8862eSJed Brown . time - The time at which to sample 80714d6f44ffSToby Isaac . x - The coordinates 807277b739a6SMatthew Knepley . Nc - The number of components 80734d6f44ffSToby Isaac . u - The output field values 80744d6f44ffSToby Isaac - ctx - optional user-defined function context 80754d6f44ffSToby Isaac 80764d6f44ffSToby Isaac Level: developer 80774d6f44ffSToby Isaac 8078bb7acecfSBarry Smith Developer Notes: 8079bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8080bb7acecfSBarry Smith 8081bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8082bb7acecfSBarry Smith 80831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 80844d6f44ffSToby Isaac @*/ 8085a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunction(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X) 8086d71ae5a4SJacob Faibussowitsch { 80874d6f44ffSToby Isaac Vec localX; 80884d6f44ffSToby Isaac 80894d6f44ffSToby Isaac PetscFunctionBegin; 80904d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8091708be2fdSJed Brown PetscCall(PetscLogEventBegin(DM_ProjectFunction, dm, X, 0, 0)); 80929566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 8093f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 80949566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, mode, localX)); 80959566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 80969566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 80979566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 8098708be2fdSJed Brown PetscCall(PetscLogEventEnd(DM_ProjectFunction, dm, X, 0, 0)); 80993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 81004d6f44ffSToby Isaac } 81014d6f44ffSToby Isaac 8102a6e0b375SMatthew G. Knepley /*@C 8103bb7acecfSBarry Smith DMProjectFunctionLocal - This projects the given function into the function space provided by a `DM`, putting the coefficients in a local vector. 8104a6e0b375SMatthew G. Knepley 810520f4b53cSBarry Smith Not Collective 8106a6e0b375SMatthew G. Knepley 8107a6e0b375SMatthew G. Knepley Input Parameters: 8108bb7acecfSBarry Smith + dm - The `DM` 8109a6e0b375SMatthew G. Knepley . time - The time 8110a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8111a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 8112a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8113a6e0b375SMatthew G. Knepley 8114a6e0b375SMatthew G. Knepley Output Parameter: 8115a6e0b375SMatthew G. Knepley . localX - vector 8116a6e0b375SMatthew G. Knepley 811720f4b53cSBarry Smith Calling sequence of `funcs`: 8118a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8119a4e35b19SJacob Faibussowitsch . time - The current timestep 8120a6e0b375SMatthew G. Knepley . x - The coordinates 812177b739a6SMatthew Knepley . Nc - The number of components 8122a6e0b375SMatthew G. Knepley . u - The output field values 8123a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8124a6e0b375SMatthew G. Knepley 8125a6e0b375SMatthew G. Knepley Level: developer 8126a6e0b375SMatthew G. Knepley 8127bb7acecfSBarry Smith Developer Notes: 8128bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8129bb7acecfSBarry Smith 8130bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8131bb7acecfSBarry Smith 81321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 8133a6e0b375SMatthew G. Knepley @*/ 8134a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX) 8135d71ae5a4SJacob Faibussowitsch { 81364d6f44ffSToby Isaac PetscFunctionBegin; 81374d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8138064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 8139fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfunctionlocal, time, funcs, ctxs, mode, localX); 81403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 81414d6f44ffSToby Isaac } 81424d6f44ffSToby Isaac 8143a6e0b375SMatthew G. Knepley /*@C 8144bb7acecfSBarry Smith DMProjectFunctionLabel - This projects the given function into the function space provided by the `DM`, putting the coefficients in a global vector, setting values only for points in the given label. 8145a6e0b375SMatthew G. Knepley 814620f4b53cSBarry Smith Collective 8147a6e0b375SMatthew G. Knepley 8148a6e0b375SMatthew G. Knepley Input Parameters: 8149bb7acecfSBarry Smith + dm - The `DM` 8150a6e0b375SMatthew G. Knepley . time - The time 8151a4e35b19SJacob Faibussowitsch . numIds - The number of ids 8152a4e35b19SJacob Faibussowitsch . ids - The ids 8153a4e35b19SJacob Faibussowitsch . Nc - The number of components 8154a4e35b19SJacob Faibussowitsch . comps - The components 8155bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8156a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8157bb7acecfSBarry Smith . ctxs - Optional array of contexts to pass to each coordinate function. ctxs may be null. 8158a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8159a6e0b375SMatthew G. Knepley 8160a6e0b375SMatthew G. Knepley Output Parameter: 8161a6e0b375SMatthew G. Knepley . X - vector 8162a6e0b375SMatthew G. Knepley 816320f4b53cSBarry Smith Calling sequence of `funcs`: 8164a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8165a4e35b19SJacob Faibussowitsch . time - The current timestep 8166a6e0b375SMatthew G. Knepley . x - The coordinates 816777b739a6SMatthew Knepley . Nc - The number of components 8168a6e0b375SMatthew G. Knepley . u - The output field values 8169a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8170a6e0b375SMatthew G. Knepley 8171a6e0b375SMatthew G. Knepley Level: developer 8172a6e0b375SMatthew G. Knepley 8173bb7acecfSBarry Smith Developer Notes: 8174bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8175bb7acecfSBarry Smith 8176bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8177bb7acecfSBarry Smith 81781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`, `DMComputeL2Diff()` 8179a6e0b375SMatthew G. Knepley @*/ 8180a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X) 8181d71ae5a4SJacob Faibussowitsch { 81822c53366bSMatthew G. Knepley Vec localX; 81832c53366bSMatthew G. Knepley 81842c53366bSMatthew G. Knepley PetscFunctionBegin; 81852c53366bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 81869566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 8187f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 81889566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX)); 81899566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 81909566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 81919566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 81923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 81932c53366bSMatthew G. Knepley } 81942c53366bSMatthew G. Knepley 8195a6e0b375SMatthew G. Knepley /*@C 8196bb7acecfSBarry Smith DMProjectFunctionLabelLocal - This projects the given function into the function space provided by the `DM`, putting the coefficients in a local vector, setting values only for points in the given label. 8197a6e0b375SMatthew G. Knepley 819820f4b53cSBarry Smith Not Collective 8199a6e0b375SMatthew G. Knepley 8200a6e0b375SMatthew G. Knepley Input Parameters: 8201bb7acecfSBarry Smith + dm - The `DM` 8202a6e0b375SMatthew G. Knepley . time - The time 8203bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8204a4e35b19SJacob Faibussowitsch . numIds - The number of ids 8205a4e35b19SJacob Faibussowitsch . ids - The ids 8206a4e35b19SJacob Faibussowitsch . Nc - The number of components 8207a4e35b19SJacob Faibussowitsch . comps - The components 8208a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8209a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 8210a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8211a6e0b375SMatthew G. Knepley 8212a6e0b375SMatthew G. Knepley Output Parameter: 8213a6e0b375SMatthew G. Knepley . localX - vector 8214a6e0b375SMatthew G. Knepley 821520f4b53cSBarry Smith Calling sequence of `funcs`: 8216a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8217a4e35b19SJacob Faibussowitsch . time - The current time 8218a6e0b375SMatthew G. Knepley . x - The coordinates 821977b739a6SMatthew Knepley . Nc - The number of components 8220a6e0b375SMatthew G. Knepley . u - The output field values 8221a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8222a6e0b375SMatthew G. Knepley 8223a6e0b375SMatthew G. Knepley Level: developer 8224a6e0b375SMatthew G. Knepley 8225bb7acecfSBarry Smith Developer Notes: 8226bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8227bb7acecfSBarry Smith 8228bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8229bb7acecfSBarry Smith 82301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 8231a6e0b375SMatthew G. Knepley @*/ 8232a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX) 8233d71ae5a4SJacob Faibussowitsch { 82344d6f44ffSToby Isaac PetscFunctionBegin; 82354d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8236064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8237fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfunctionlabellocal, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX); 82383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82394d6f44ffSToby Isaac } 82402716604bSToby Isaac 8241a6e0b375SMatthew G. Knepley /*@C 8242bb7acecfSBarry Smith DMProjectFieldLocal - This projects the given function of the input fields into the function space provided by the `DM`, putting the coefficients in a local vector. 8243a6e0b375SMatthew G. Knepley 824420f4b53cSBarry Smith Not Collective 8245a6e0b375SMatthew G. Knepley 8246a6e0b375SMatthew G. Knepley Input Parameters: 8247bb7acecfSBarry Smith + dm - The `DM` 8248a6e0b375SMatthew G. Knepley . time - The time 824920f4b53cSBarry Smith . localU - The input field vector; may be `NULL` if projection is defined purely by coordinates 8250a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8251a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8252a6e0b375SMatthew G. Knepley 8253a6e0b375SMatthew G. Knepley Output Parameter: 8254a6e0b375SMatthew G. Knepley . localX - The output vector 8255a6e0b375SMatthew G. Knepley 825620f4b53cSBarry Smith Calling sequence of `funcs`: 8257a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8258a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8259a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8260a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8261a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8262a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8263a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8264a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8265a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8266a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8267a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8268a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8269a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8270a6e0b375SMatthew G. Knepley . t - The current time 8271a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8272a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8273a6e0b375SMatthew G. Knepley . constants - The value of each constant 8274a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8275a6e0b375SMatthew G. Knepley 827673ff1848SBarry Smith Level: intermediate 827773ff1848SBarry Smith 8278bb7acecfSBarry Smith Note: 8279bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8280bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8281bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8282a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8283a6e0b375SMatthew G. Knepley 8284bb7acecfSBarry Smith Developer Notes: 8285bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8286bb7acecfSBarry Smith 8287bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8288bb7acecfSBarry Smith 8289a4e35b19SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, 8290a4e35b19SJacob Faibussowitsch `DMProjectFunction()`, `DMComputeL2Diff()` 8291a6e0b375SMatthew G. Knepley @*/ 8292a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLocal(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8293d71ae5a4SJacob Faibussowitsch { 82948c6c5593SMatthew G. Knepley PetscFunctionBegin; 82958c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8296eb8f539aSJed Brown if (localU) PetscValidHeaderSpecific(localU, VEC_CLASSID, 3); 82978c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 8298fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfieldlocal, time, localU, funcs, mode, localX); 82993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 83008c6c5593SMatthew G. Knepley } 83018c6c5593SMatthew G. Knepley 8302a6e0b375SMatthew G. Knepley /*@C 8303a6e0b375SMatthew G. Knepley DMProjectFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain specified by the label. 8304a6e0b375SMatthew G. Knepley 830520f4b53cSBarry Smith Not Collective 8306a6e0b375SMatthew G. Knepley 8307a6e0b375SMatthew G. Knepley Input Parameters: 8308bb7acecfSBarry Smith + dm - The `DM` 8309a6e0b375SMatthew G. Knepley . time - The time 8310bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8311a6e0b375SMatthew G. Knepley . numIds - The number of label ids to use 8312a6e0b375SMatthew G. Knepley . ids - The label ids to use for marking 8313bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 831420f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8315a6e0b375SMatthew G. Knepley . localU - The input field vector 8316a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8317a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8318a6e0b375SMatthew G. Knepley 8319a6e0b375SMatthew G. Knepley Output Parameter: 8320a6e0b375SMatthew G. Knepley . localX - The output vector 8321a6e0b375SMatthew G. Knepley 832220f4b53cSBarry Smith Calling sequence of `funcs`: 8323a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8324a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8325a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8326a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8327a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8328a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8329a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8330a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8331a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8332a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8333a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8334a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8335a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8336a6e0b375SMatthew G. Knepley . t - The current time 8337a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8338a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8339a6e0b375SMatthew G. Knepley . constants - The value of each constant 8340a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8341a6e0b375SMatthew G. Knepley 834273ff1848SBarry Smith Level: intermediate 834373ff1848SBarry Smith 8344bb7acecfSBarry Smith Note: 8345bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8346bb7acecfSBarry Smith The input `DM`, attached to localU, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8347bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8348a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8349a6e0b375SMatthew G. Knepley 8350bb7acecfSBarry Smith Developer Notes: 8351bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8352bb7acecfSBarry Smith 8353bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8354bb7acecfSBarry Smith 83551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabel()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8356a6e0b375SMatthew G. Knepley @*/ 8357a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8358d71ae5a4SJacob Faibussowitsch { 83598c6c5593SMatthew G. Knepley PetscFunctionBegin; 83608c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8361064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8362064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8363fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX); 83643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 83658c6c5593SMatthew G. Knepley } 83668c6c5593SMatthew G. Knepley 83672716604bSToby Isaac /*@C 8368d29d7c6eSMatthew G. Knepley DMProjectFieldLabel - This projects the given function of the input fields into the function space provided, putting the coefficients in a global vector, calculating only over the portion of the domain specified by the label. 8369d29d7c6eSMatthew G. Knepley 837020f4b53cSBarry Smith Not Collective 8371d29d7c6eSMatthew G. Knepley 8372d29d7c6eSMatthew G. Knepley Input Parameters: 8373bb7acecfSBarry Smith + dm - The `DM` 8374d29d7c6eSMatthew G. Knepley . time - The time 8375bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8376d29d7c6eSMatthew G. Knepley . numIds - The number of label ids to use 8377d29d7c6eSMatthew G. Knepley . ids - The label ids to use for marking 8378bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 837920f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8380d29d7c6eSMatthew G. Knepley . U - The input field vector 8381d29d7c6eSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8382d29d7c6eSMatthew G. Knepley - mode - The insertion mode for values 8383d29d7c6eSMatthew G. Knepley 8384d29d7c6eSMatthew G. Knepley Output Parameter: 8385d29d7c6eSMatthew G. Knepley . X - The output vector 8386d29d7c6eSMatthew G. Knepley 838720f4b53cSBarry Smith Calling sequence of `funcs`: 8388d29d7c6eSMatthew G. Knepley + dim - The spatial dimension 8389d29d7c6eSMatthew G. Knepley . Nf - The number of input fields 8390d29d7c6eSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8391d29d7c6eSMatthew G. Knepley . uOff - The offset of each field in u[] 8392d29d7c6eSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8393d29d7c6eSMatthew G. Knepley . u - The field values at this point in space 8394d29d7c6eSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8395d29d7c6eSMatthew G. Knepley . u_x - The field derivatives at this point in space 8396d29d7c6eSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8397d29d7c6eSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8398d29d7c6eSMatthew G. Knepley . a - The auxiliary field values at this point in space 8399d29d7c6eSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8400d29d7c6eSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8401d29d7c6eSMatthew G. Knepley . t - The current time 8402d29d7c6eSMatthew G. Knepley . x - The coordinates of this point 8403d29d7c6eSMatthew G. Knepley . numConstants - The number of constants 8404d29d7c6eSMatthew G. Knepley . constants - The value of each constant 8405d29d7c6eSMatthew G. Knepley - f - The value of the function at this point in space 8406d29d7c6eSMatthew G. Knepley 840773ff1848SBarry Smith Level: intermediate 840873ff1848SBarry Smith 8409bb7acecfSBarry Smith Note: 8410bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8411bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8412bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8413d29d7c6eSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8414d29d7c6eSMatthew G. Knepley 8415bb7acecfSBarry Smith Developer Notes: 8416bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8417bb7acecfSBarry Smith 8418bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8419bb7acecfSBarry Smith 84201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8421d29d7c6eSMatthew G. Knepley @*/ 8422a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec U, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec X) 8423d71ae5a4SJacob Faibussowitsch { 8424d29d7c6eSMatthew G. Knepley DM dmIn; 8425d29d7c6eSMatthew G. Knepley Vec localU, localX; 8426d29d7c6eSMatthew G. Knepley 8427d29d7c6eSMatthew G. Knepley PetscFunctionBegin; 8428d29d7c6eSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8429d29d7c6eSMatthew G. Knepley PetscCall(VecGetDM(U, &dmIn)); 8430d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dmIn, &localU)); 8431d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &localX)); 8432f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 843372fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalBegin(dmIn, U, mode, localU)); 843472fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalEnd(dmIn, U, mode, localU)); 8435d29d7c6eSMatthew G. Knepley PetscCall(DMProjectFieldLabelLocal(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX)); 8436d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 8437d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 8438d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &localX)); 8439d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dmIn, &localU)); 84403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8441d29d7c6eSMatthew G. Knepley } 8442d29d7c6eSMatthew G. Knepley 8443d29d7c6eSMatthew G. Knepley /*@C 8444ece3a9fcSMatthew G. Knepley DMProjectBdFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain boundary specified by the label. 8445ece3a9fcSMatthew G. Knepley 844620f4b53cSBarry Smith Not Collective 8447ece3a9fcSMatthew G. Knepley 8448ece3a9fcSMatthew G. Knepley Input Parameters: 8449bb7acecfSBarry Smith + dm - The `DM` 8450ece3a9fcSMatthew G. Knepley . time - The time 8451bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain boundary to output 8452ece3a9fcSMatthew G. Knepley . numIds - The number of label ids to use 8453ece3a9fcSMatthew G. Knepley . ids - The label ids to use for marking 8454bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 845520f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8456ece3a9fcSMatthew G. Knepley . localU - The input field vector 8457ece3a9fcSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8458ece3a9fcSMatthew G. Knepley - mode - The insertion mode for values 8459ece3a9fcSMatthew G. Knepley 8460ece3a9fcSMatthew G. Knepley Output Parameter: 8461ece3a9fcSMatthew G. Knepley . localX - The output vector 8462ece3a9fcSMatthew G. Knepley 846320f4b53cSBarry Smith Calling sequence of `funcs`: 8464ece3a9fcSMatthew G. Knepley + dim - The spatial dimension 8465ece3a9fcSMatthew G. Knepley . Nf - The number of input fields 8466ece3a9fcSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8467ece3a9fcSMatthew G. Knepley . uOff - The offset of each field in u[] 8468ece3a9fcSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8469ece3a9fcSMatthew G. Knepley . u - The field values at this point in space 8470ece3a9fcSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8471ece3a9fcSMatthew G. Knepley . u_x - The field derivatives at this point in space 8472ece3a9fcSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8473ece3a9fcSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8474ece3a9fcSMatthew G. Knepley . a - The auxiliary field values at this point in space 8475ece3a9fcSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8476ece3a9fcSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8477ece3a9fcSMatthew G. Knepley . t - The current time 8478ece3a9fcSMatthew G. Knepley . x - The coordinates of this point 8479ece3a9fcSMatthew G. Knepley . n - The face normal 8480ece3a9fcSMatthew G. Knepley . numConstants - The number of constants 8481ece3a9fcSMatthew G. Knepley . constants - The value of each constant 8482ece3a9fcSMatthew G. Knepley - f - The value of the function at this point in space 8483ece3a9fcSMatthew G. Knepley 848473ff1848SBarry Smith Level: intermediate 848573ff1848SBarry Smith 8486ece3a9fcSMatthew G. Knepley Note: 8487bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8488bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8489bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8490ece3a9fcSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8491ece3a9fcSMatthew G. Knepley 8492bb7acecfSBarry Smith Developer Notes: 8493bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8494bb7acecfSBarry Smith 8495bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8496bb7acecfSBarry Smith 84971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8498ece3a9fcSMatthew G. Knepley @*/ 8499a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectBdFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8500d71ae5a4SJacob Faibussowitsch { 8501ece3a9fcSMatthew G. Knepley PetscFunctionBegin; 8502ece3a9fcSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8503064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8504064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8505fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectbdfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX); 85063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8507ece3a9fcSMatthew G. Knepley } 8508ece3a9fcSMatthew G. Knepley 8509ece3a9fcSMatthew G. Knepley /*@C 85102716604bSToby Isaac DMComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 85112716604bSToby Isaac 851220f4b53cSBarry Smith Collective 8513bb7acecfSBarry Smith 85142716604bSToby Isaac Input Parameters: 8515bb7acecfSBarry Smith + dm - The `DM` 85160709b2feSToby Isaac . time - The time 85172716604bSToby Isaac . funcs - The functions to evaluate for each field component 85182716604bSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8519574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 85202716604bSToby Isaac 85212716604bSToby Isaac Output Parameter: 85222716604bSToby Isaac . diff - The diff ||u - u_h||_2 85232716604bSToby Isaac 85242716604bSToby Isaac Level: developer 85252716604bSToby Isaac 8526bb7acecfSBarry Smith Developer Notes: 8527bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8528bb7acecfSBarry Smith 8529bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8530bb7acecfSBarry Smith 85311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 85322716604bSToby Isaac @*/ 8533d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 8534d71ae5a4SJacob Faibussowitsch { 85352716604bSToby Isaac PetscFunctionBegin; 85362716604bSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8537b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8538fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2diff, time, funcs, ctxs, X, diff); 85393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 85402716604bSToby Isaac } 8541b698f381SToby Isaac 8542b698f381SToby Isaac /*@C 8543b698f381SToby Isaac DMComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h. 8544b698f381SToby Isaac 854520f4b53cSBarry Smith Collective 8546d083f849SBarry Smith 8547b698f381SToby Isaac Input Parameters: 8548bb7acecfSBarry Smith + dm - The `DM` 8549a4e35b19SJacob Faibussowitsch . time - The time 8550b698f381SToby Isaac . funcs - The gradient functions to evaluate for each field component 8551b698f381SToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8552574a98acSMatthew G. Knepley . X - The coefficient vector u_h, a global vector 8553b698f381SToby Isaac - n - The vector to project along 8554b698f381SToby Isaac 8555b698f381SToby Isaac Output Parameter: 8556b698f381SToby Isaac . diff - The diff ||(grad u - grad u_h) . n||_2 8557b698f381SToby Isaac 8558b698f381SToby Isaac Level: developer 8559b698f381SToby Isaac 8560bb7acecfSBarry Smith Developer Notes: 8561bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8562bb7acecfSBarry Smith 8563bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8564bb7acecfSBarry Smith 85651cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMComputeL2FieldDiff()` 8566b698f381SToby Isaac @*/ 8567d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 8568d71ae5a4SJacob Faibussowitsch { 8569b698f381SToby Isaac PetscFunctionBegin; 8570b698f381SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8571b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8572fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2gradientdiff, time, funcs, ctxs, X, n, diff); 85733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8574b698f381SToby Isaac } 8575b698f381SToby Isaac 85762a16baeaSToby Isaac /*@C 85772a16baeaSToby Isaac DMComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components. 85782a16baeaSToby Isaac 857920f4b53cSBarry Smith Collective 8580d083f849SBarry Smith 85812a16baeaSToby Isaac Input Parameters: 8582bb7acecfSBarry Smith + dm - The `DM` 85832a16baeaSToby Isaac . time - The time 85842a16baeaSToby Isaac . funcs - The functions to evaluate for each field component 85852a16baeaSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8586574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 85872a16baeaSToby Isaac 85882a16baeaSToby Isaac Output Parameter: 85892a16baeaSToby Isaac . diff - The array of differences, ||u^f - u^f_h||_2 85902a16baeaSToby Isaac 85912a16baeaSToby Isaac Level: developer 85922a16baeaSToby Isaac 8593bb7acecfSBarry Smith Developer Notes: 8594bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8595bb7acecfSBarry Smith 8596bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8597bb7acecfSBarry Smith 859842747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2GradientDiff()` 85992a16baeaSToby Isaac @*/ 8600d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[]) 8601d71ae5a4SJacob Faibussowitsch { 86022a16baeaSToby Isaac PetscFunctionBegin; 86032a16baeaSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 86042a16baeaSToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8605fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2fielddiff, time, funcs, ctxs, X, diff); 86063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 86072a16baeaSToby Isaac } 86082a16baeaSToby Isaac 8609df0b854cSToby Isaac /*@C 8610bb7acecfSBarry Smith DMGetNeighbors - Gets an array containing the MPI ranks of all the processes neighbors 8611502a2867SDave May 8612502a2867SDave May Not Collective 8613502a2867SDave May 8614502a2867SDave May Input Parameter: 8615bb7acecfSBarry Smith . dm - The `DM` 8616502a2867SDave May 86170a19bb7dSprj- Output Parameters: 86180a19bb7dSprj- + nranks - the number of neighbours 86190a19bb7dSprj- - ranks - the neighbors ranks 8620502a2867SDave May 86219bdbcad8SBarry Smith Level: beginner 86229bdbcad8SBarry Smith 8623bb7acecfSBarry Smith Note: 8624bb7acecfSBarry Smith Do not free the array, it is freed when the `DM` is destroyed. 8625502a2867SDave May 86261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDAGetNeighbors()`, `PetscSFGetRootRanks()` 8627502a2867SDave May @*/ 8628d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNeighbors(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[]) 8629d71ae5a4SJacob Faibussowitsch { 8630502a2867SDave May PetscFunctionBegin; 8631502a2867SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8632fa1e479aSStefano Zampini PetscUseTypeMethod(dm, getneighbors, nranks, ranks); 86333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8634502a2867SDave May } 8635502a2867SDave May 8636531c7667SBarry Smith #include <petsc/private/matimpl.h> /* Needed because of coloring->ctype below */ 8637531c7667SBarry Smith 8638531c7667SBarry Smith /* 8639531c7667SBarry Smith Converts the input vector to a ghosted vector and then calls the standard coloring code. 86402b6f951bSStefano Zampini This must be a different function because it requires DM which is not defined in the Mat library 8641531c7667SBarry Smith */ 864266976f2fSJacob Faibussowitsch static PetscErrorCode MatFDColoringApply_AIJDM(Mat J, MatFDColoring coloring, Vec x1, void *sctx) 8643d71ae5a4SJacob Faibussowitsch { 8644531c7667SBarry Smith PetscFunctionBegin; 8645531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8646531c7667SBarry Smith Vec x1local; 8647531c7667SBarry Smith DM dm; 86489566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 86497a8be351SBarry Smith PetscCheck(dm, PetscObjectComm((PetscObject)J), PETSC_ERR_ARG_INCOMP, "IS_COLORING_LOCAL requires a DM"); 86509566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &x1local)); 86519566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, x1, INSERT_VALUES, x1local)); 86529566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, x1, INSERT_VALUES, x1local)); 8653531c7667SBarry Smith x1 = x1local; 8654531c7667SBarry Smith } 86559566063dSJacob Faibussowitsch PetscCall(MatFDColoringApply_AIJ(J, coloring, x1, sctx)); 8656531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8657531c7667SBarry Smith DM dm; 86589566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 86599566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &x1)); 8660531c7667SBarry Smith } 86613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8662531c7667SBarry Smith } 8663531c7667SBarry Smith 8664531c7667SBarry Smith /*@ 8665bb7acecfSBarry Smith MatFDColoringUseDM - allows a `MatFDColoring` object to use the `DM` associated with the matrix to compute a `IS_COLORING_LOCAL` coloring 8666531c7667SBarry Smith 8667a4e35b19SJacob Faibussowitsch Input Parameters: 8668a4e35b19SJacob Faibussowitsch + coloring - The matrix to get the `DM` from 8669a4e35b19SJacob Faibussowitsch - fdcoloring - the `MatFDColoring` object 8670531c7667SBarry Smith 86719bdbcad8SBarry Smith Level: advanced 86729bdbcad8SBarry Smith 867373ff1848SBarry Smith Developer Note: 867473ff1848SBarry Smith This routine exists because the PETSc `Mat` library does not know about the `DM` objects 8675531c7667SBarry Smith 86761cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatFDColoring`, `MatFDColoringCreate()`, `ISColoringType` 8677531c7667SBarry Smith @*/ 8678d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringUseDM(Mat coloring, MatFDColoring fdcoloring) 8679d71ae5a4SJacob Faibussowitsch { 8680531c7667SBarry Smith PetscFunctionBegin; 8681531c7667SBarry Smith coloring->ops->fdcoloringapply = MatFDColoringApply_AIJDM; 86823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8683531c7667SBarry Smith } 86848320bc6fSPatrick Sanan 86858320bc6fSPatrick Sanan /*@ 8686bb7acecfSBarry Smith DMGetCompatibility - determine if two `DM`s are compatible 86878320bc6fSPatrick Sanan 86888320bc6fSPatrick Sanan Collective 86898320bc6fSPatrick Sanan 86908320bc6fSPatrick Sanan Input Parameters: 8691bb7acecfSBarry Smith + dm1 - the first `DM` 8692bb7acecfSBarry Smith - dm2 - the second `DM` 86938320bc6fSPatrick Sanan 86948320bc6fSPatrick Sanan Output Parameters: 8695bb7acecfSBarry Smith + compatible - whether or not the two `DM`s are compatible 8696bb7acecfSBarry Smith - set - whether or not the compatible value was actually determined and set 86978320bc6fSPatrick Sanan 869820f4b53cSBarry Smith Level: advanced 869920f4b53cSBarry Smith 87008320bc6fSPatrick Sanan Notes: 8701bb7acecfSBarry Smith Two `DM`s are deemed compatible if they represent the same parallel decomposition 87023d862458SPatrick Sanan of the same topology. This implies that the section (field data) on one 87038320bc6fSPatrick Sanan "makes sense" with respect to the topology and parallel decomposition of the other. 8704bb7acecfSBarry Smith Loosely speaking, compatible `DM`s represent the same domain and parallel 87053d862458SPatrick Sanan decomposition, but hold different data. 87068320bc6fSPatrick Sanan 87078320bc6fSPatrick Sanan Typically, one would confirm compatibility if intending to simultaneously iterate 8708bb7acecfSBarry Smith over a pair of vectors obtained from different `DM`s. 87098320bc6fSPatrick Sanan 8710bb7acecfSBarry Smith For example, two `DMDA` objects are compatible if they have the same local 87118320bc6fSPatrick Sanan and global sizes and the same stencil width. They can have different numbers 87128320bc6fSPatrick Sanan of degrees of freedom per node. Thus, one could use the node numbering from 8713bb7acecfSBarry Smith either `DM` in bounds for a loop over vectors derived from either `DM`. 87148320bc6fSPatrick Sanan 8715bb7acecfSBarry Smith Consider the operation of summing data living on a 2-dof `DMDA` to data living 8716bb7acecfSBarry Smith on a 1-dof `DMDA`, which should be compatible, as in the following snippet. 87178320bc6fSPatrick Sanan .vb 87188320bc6fSPatrick Sanan ... 87199566063dSJacob Faibussowitsch PetscCall(DMGetCompatibility(da1,da2,&compatible,&set)); 87208320bc6fSPatrick Sanan if (set && compatible) { 87219566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da1,vec1,&arr1)); 87229566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da2,vec2,&arr2)); 87239566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da1,&x,&y,NULL,&m,&n,NULL)); 87248320bc6fSPatrick Sanan for (j=y; j<y+n; ++j) { 87258320bc6fSPatrick Sanan for (i=x; i<x+m, ++i) { 87268320bc6fSPatrick Sanan arr1[j][i][0] = arr2[j][i][0] + arr2[j][i][1]; 87278320bc6fSPatrick Sanan } 87288320bc6fSPatrick Sanan } 87299566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da1,vec1,&arr1)); 87309566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da2,vec2,&arr2)); 87318320bc6fSPatrick Sanan } else { 87328320bc6fSPatrick Sanan SETERRQ(PetscObjectComm((PetscObject)da1,PETSC_ERR_ARG_INCOMP,"DMDA objects incompatible"); 87338320bc6fSPatrick Sanan } 87348320bc6fSPatrick Sanan ... 87358320bc6fSPatrick Sanan .ve 87368320bc6fSPatrick Sanan 8737bb7acecfSBarry Smith Checking compatibility might be expensive for a given implementation of `DM`, 87388320bc6fSPatrick Sanan or might be impossible to unambiguously confirm or deny. For this reason, 87398320bc6fSPatrick Sanan this function may decline to determine compatibility, and hence users should 87408320bc6fSPatrick Sanan always check the "set" output parameter. 87418320bc6fSPatrick Sanan 8742bb7acecfSBarry Smith A `DM` is always compatible with itself. 87438320bc6fSPatrick Sanan 8744bb7acecfSBarry Smith In the current implementation, `DM`s which live on "unequal" communicators 87458320bc6fSPatrick Sanan (MPI_UNEQUAL in the terminology of MPI_Comm_compare()) are always deemed 87468320bc6fSPatrick Sanan incompatible. 87478320bc6fSPatrick Sanan 87488320bc6fSPatrick Sanan This function is labeled "Collective," as information about all subdomains 8749bb7acecfSBarry Smith is required on each rank. However, in `DM` implementations which store all this 87508320bc6fSPatrick Sanan information locally, this function may be merely "Logically Collective". 87518320bc6fSPatrick Sanan 875273ff1848SBarry Smith Developer Note: 8753bb7acecfSBarry Smith Compatibility is assumed to be a symmetric concept; `DM` A is compatible with `DM` B 87543d862458SPatrick Sanan iff B is compatible with A. Thus, this function checks the implementations 8755a5bc1bf3SBarry Smith of both dm and dmc (if they are of different types), attempting to determine 8756bb7acecfSBarry Smith compatibility. It is left to `DM` implementers to ensure that symmetry is 87578320bc6fSPatrick Sanan preserved. The simplest way to do this is, when implementing type-specific 87583d862458SPatrick Sanan logic for this function, is to check for existing logic in the implementation 8759bb7acecfSBarry Smith of other `DM` types and let *set = PETSC_FALSE if found. 87608320bc6fSPatrick Sanan 87611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreateCompatibleDMDA()`, `DMStagCreateCompatibleDMStag()` 87628320bc6fSPatrick Sanan @*/ 8763d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCompatibility(DM dm1, DM dm2, PetscBool *compatible, PetscBool *set) 8764d71ae5a4SJacob Faibussowitsch { 87658320bc6fSPatrick Sanan PetscMPIInt compareResult; 87668320bc6fSPatrick Sanan DMType type, type2; 87678320bc6fSPatrick Sanan PetscBool sameType; 87688320bc6fSPatrick Sanan 87698320bc6fSPatrick Sanan PetscFunctionBegin; 8770a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dm1, DM_CLASSID, 1); 87718320bc6fSPatrick Sanan PetscValidHeaderSpecific(dm2, DM_CLASSID, 2); 87728320bc6fSPatrick Sanan 87738320bc6fSPatrick Sanan /* Declare a DM compatible with itself */ 8774a5bc1bf3SBarry Smith if (dm1 == dm2) { 87758320bc6fSPatrick Sanan *set = PETSC_TRUE; 87768320bc6fSPatrick Sanan *compatible = PETSC_TRUE; 87773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 87788320bc6fSPatrick Sanan } 87798320bc6fSPatrick Sanan 87808320bc6fSPatrick Sanan /* Declare a DM incompatible with a DM that lives on an "unequal" 87818320bc6fSPatrick Sanan communicator. Note that this does not preclude compatibility with 87828320bc6fSPatrick Sanan DMs living on "congruent" or "similar" communicators, but this must be 87838320bc6fSPatrick Sanan determined by the implementation-specific logic */ 87849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)dm1), PetscObjectComm((PetscObject)dm2), &compareResult)); 87858320bc6fSPatrick Sanan if (compareResult == MPI_UNEQUAL) { 87868320bc6fSPatrick Sanan *set = PETSC_TRUE; 87878320bc6fSPatrick Sanan *compatible = PETSC_FALSE; 87883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 87898320bc6fSPatrick Sanan } 87908320bc6fSPatrick Sanan 87918320bc6fSPatrick Sanan /* Pass to the implementation-specific routine, if one exists. */ 8792a5bc1bf3SBarry Smith if (dm1->ops->getcompatibility) { 8793dbbe0bcdSBarry Smith PetscUseTypeMethod(dm1, getcompatibility, dm2, compatible, set); 87943ba16761SJacob Faibussowitsch if (*set) PetscFunctionReturn(PETSC_SUCCESS); 87958320bc6fSPatrick Sanan } 87968320bc6fSPatrick Sanan 8797a5bc1bf3SBarry Smith /* If dm1 and dm2 are of different types, then attempt to check compatibility 87988320bc6fSPatrick Sanan with an implementation of this function from dm2 */ 87999566063dSJacob Faibussowitsch PetscCall(DMGetType(dm1, &type)); 88009566063dSJacob Faibussowitsch PetscCall(DMGetType(dm2, &type2)); 88019566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(type, type2, &sameType)); 88028320bc6fSPatrick Sanan if (!sameType && dm2->ops->getcompatibility) { 8803dbbe0bcdSBarry Smith PetscUseTypeMethod(dm2, getcompatibility, dm1, compatible, set); /* Note argument order */ 88048320bc6fSPatrick Sanan } else { 88058320bc6fSPatrick Sanan *set = PETSC_FALSE; 88068320bc6fSPatrick Sanan } 88073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 88088320bc6fSPatrick Sanan } 8809c0f0dcc3SMatthew G. Knepley 8810c0f0dcc3SMatthew G. Knepley /*@C 8811bb7acecfSBarry Smith DMMonitorSet - Sets an additional monitor function that is to be used after a solve to monitor discretization performance. 8812c0f0dcc3SMatthew G. Knepley 881320f4b53cSBarry Smith Logically Collective 8814c0f0dcc3SMatthew G. Knepley 8815c0f0dcc3SMatthew G. Knepley Input Parameters: 881660225df5SJacob Faibussowitsch + dm - the `DM` 8817c0f0dcc3SMatthew G. Knepley . f - the monitor function 881820f4b53cSBarry Smith . mctx - [optional] user-defined context for private data for the monitor routine (use `NULL` if no context is desired) 881920f4b53cSBarry Smith - monitordestroy - [optional] routine that frees monitor context (may be `NULL`) 8820c0f0dcc3SMatthew G. Knepley 882120f4b53cSBarry Smith Options Database Key: 882260225df5SJacob Faibussowitsch . -dm_monitor_cancel - cancels all monitors that have been hardwired into a code by calls to `DMMonitorSet()`, but 8823c0f0dcc3SMatthew G. Knepley does not cancel those set via the options database. 8824c0f0dcc3SMatthew G. Knepley 88259bdbcad8SBarry Smith Level: intermediate 88269bdbcad8SBarry Smith 8827bb7acecfSBarry Smith Note: 8828c0f0dcc3SMatthew G. Knepley Several different monitoring routines may be set by calling 8829bb7acecfSBarry Smith `DMMonitorSet()` multiple times or with `DMMonitorSetFromOptions()`; all will be called in the 8830c0f0dcc3SMatthew G. Knepley order in which they were set. 8831c0f0dcc3SMatthew G. Knepley 883273ff1848SBarry Smith Fortran Note: 8833bb7acecfSBarry Smith Only a single monitor function can be set for each `DM` object 8834bb7acecfSBarry Smith 883573ff1848SBarry Smith Developer Note: 8836bb7acecfSBarry Smith This API has a generic name but seems specific to a very particular aspect of the use of `DM` 8837c0f0dcc3SMatthew G. Knepley 88381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorCancel()`, `DMMonitorSetFromOptions()`, `DMMonitor()` 8839c0f0dcc3SMatthew G. Knepley @*/ 8840d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSet(DM dm, PetscErrorCode (*f)(DM, void *), void *mctx, PetscErrorCode (*monitordestroy)(void **)) 8841d71ae5a4SJacob Faibussowitsch { 8842c0f0dcc3SMatthew G. Knepley PetscInt m; 8843c0f0dcc3SMatthew G. Knepley 8844c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8845c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8846c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 8847c0f0dcc3SMatthew G. Knepley PetscBool identical; 8848c0f0dcc3SMatthew G. Knepley 88499566063dSJacob Faibussowitsch PetscCall(PetscMonitorCompare((PetscErrorCode(*)(void))f, mctx, monitordestroy, (PetscErrorCode(*)(void))dm->monitor[m], dm->monitorcontext[m], dm->monitordestroy[m], &identical)); 88503ba16761SJacob Faibussowitsch if (identical) PetscFunctionReturn(PETSC_SUCCESS); 8851c0f0dcc3SMatthew G. Knepley } 88527a8be351SBarry Smith PetscCheck(dm->numbermonitors < MAXDMMONITORS, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many monitors set"); 8853c0f0dcc3SMatthew G. Knepley dm->monitor[dm->numbermonitors] = f; 8854c0f0dcc3SMatthew G. Knepley dm->monitordestroy[dm->numbermonitors] = monitordestroy; 8855c0f0dcc3SMatthew G. Knepley dm->monitorcontext[dm->numbermonitors++] = (void *)mctx; 88563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8857c0f0dcc3SMatthew G. Knepley } 8858c0f0dcc3SMatthew G. Knepley 8859c0f0dcc3SMatthew G. Knepley /*@ 8860bb7acecfSBarry Smith DMMonitorCancel - Clears all the monitor functions for a `DM` object. 8861c0f0dcc3SMatthew G. Knepley 886220f4b53cSBarry Smith Logically Collective 8863c0f0dcc3SMatthew G. Knepley 8864c0f0dcc3SMatthew G. Knepley Input Parameter: 8865c0f0dcc3SMatthew G. Knepley . dm - the DM 8866c0f0dcc3SMatthew G. Knepley 8867c0f0dcc3SMatthew G. Knepley Options Database Key: 8868c0f0dcc3SMatthew G. Knepley . -dm_monitor_cancel - cancels all monitors that have been hardwired 8869bb7acecfSBarry Smith into a code by calls to `DMonitorSet()`, but does not cancel those 8870c0f0dcc3SMatthew G. Knepley set via the options database 8871c0f0dcc3SMatthew G. Knepley 88729bdbcad8SBarry Smith Level: intermediate 88739bdbcad8SBarry Smith 8874bb7acecfSBarry Smith Note: 8875bb7acecfSBarry Smith There is no way to clear one specific monitor from a `DM` object. 8876c0f0dcc3SMatthew G. Knepley 88771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`, `DMMonitor()` 8878c0f0dcc3SMatthew G. Knepley @*/ 8879d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorCancel(DM dm) 8880d71ae5a4SJacob Faibussowitsch { 8881c0f0dcc3SMatthew G. Knepley PetscInt m; 8882c0f0dcc3SMatthew G. Knepley 8883c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8884c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8885c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 88869566063dSJacob Faibussowitsch if (dm->monitordestroy[m]) PetscCall((*dm->monitordestroy[m])(&dm->monitorcontext[m])); 8887c0f0dcc3SMatthew G. Knepley } 8888c0f0dcc3SMatthew G. Knepley dm->numbermonitors = 0; 88893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8890c0f0dcc3SMatthew G. Knepley } 8891c0f0dcc3SMatthew G. Knepley 8892c0f0dcc3SMatthew G. Knepley /*@C 8893c0f0dcc3SMatthew G. Knepley DMMonitorSetFromOptions - Sets a monitor function and viewer appropriate for the type indicated by the user 8894c0f0dcc3SMatthew G. Knepley 889520f4b53cSBarry Smith Collective 8896c0f0dcc3SMatthew G. Knepley 8897c0f0dcc3SMatthew G. Knepley Input Parameters: 8898bb7acecfSBarry Smith + dm - `DM` object you wish to monitor 8899c0f0dcc3SMatthew G. Knepley . name - the monitor type one is seeking 8900c0f0dcc3SMatthew G. Knepley . help - message indicating what monitoring is done 8901c0f0dcc3SMatthew G. Knepley . manual - manual page for the monitor 8902c0f0dcc3SMatthew G. Knepley . monitor - the monitor function 8903bb7acecfSBarry Smith - monitorsetup - a function that is called once ONLY if the user selected this monitor that may set additional features of the `DM` or `PetscViewer` objects 8904c0f0dcc3SMatthew G. Knepley 8905c0f0dcc3SMatthew G. Knepley Output Parameter: 8906c0f0dcc3SMatthew G. Knepley . flg - Flag set if the monitor was created 8907c0f0dcc3SMatthew G. Knepley 8908c0f0dcc3SMatthew G. Knepley Level: developer 8909c0f0dcc3SMatthew G. Knepley 89101cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscOptionsGetViewer()`, `PetscOptionsGetReal()`, `PetscOptionsHasName()`, `PetscOptionsGetString()`, 8911db781477SPatrick Sanan `PetscOptionsGetIntArray()`, `PetscOptionsGetRealArray()`, `PetscOptionsBool()` 891260225df5SJacob Faibussowitsch `PetscOptionsInt()`, `PetscOptionsString()`, `PetscOptionsReal()`, 8913db781477SPatrick Sanan `PetscOptionsName()`, `PetscOptionsBegin()`, `PetscOptionsEnd()`, `PetscOptionsHeadBegin()`, 8914c2e3fba1SPatrick Sanan `PetscOptionsStringArray()`, `PetscOptionsRealArray()`, `PetscOptionsScalar()`, 8915db781477SPatrick Sanan `PetscOptionsBoolGroupBegin()`, `PetscOptionsBoolGroup()`, `PetscOptionsBoolGroupEnd()`, 8916bb7acecfSBarry Smith `PetscOptionsFList()`, `PetscOptionsEList()`, `DMMonitor()`, `DMMonitorSet()` 8917c0f0dcc3SMatthew G. Knepley @*/ 8918d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSetFromOptions(DM dm, const char name[], const char help[], const char manual[], PetscErrorCode (*monitor)(DM, void *), PetscErrorCode (*monitorsetup)(DM, PetscViewerAndFormat *), PetscBool *flg) 8919d71ae5a4SJacob Faibussowitsch { 8920c0f0dcc3SMatthew G. Knepley PetscViewer viewer; 8921c0f0dcc3SMatthew G. Knepley PetscViewerFormat format; 8922c0f0dcc3SMatthew G. Knepley 8923c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8924c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 89259566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetViewer(PetscObjectComm((PetscObject)dm), ((PetscObject)dm)->options, ((PetscObject)dm)->prefix, name, &viewer, &format, flg)); 8926c0f0dcc3SMatthew G. Knepley if (*flg) { 8927c0f0dcc3SMatthew G. Knepley PetscViewerAndFormat *vf; 8928c0f0dcc3SMatthew G. Knepley 89299566063dSJacob Faibussowitsch PetscCall(PetscViewerAndFormatCreate(viewer, format, &vf)); 8930cd791dc2SBarry Smith PetscCall(PetscOptionsRestoreViewer(&viewer)); 89319566063dSJacob Faibussowitsch if (monitorsetup) PetscCall((*monitorsetup)(dm, vf)); 89329566063dSJacob Faibussowitsch PetscCall(DMMonitorSet(dm, (PetscErrorCode(*)(DM, void *))monitor, vf, (PetscErrorCode(*)(void **))PetscViewerAndFormatDestroy)); 8933c0f0dcc3SMatthew G. Knepley } 89343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8935c0f0dcc3SMatthew G. Knepley } 8936c0f0dcc3SMatthew G. Knepley 8937c0f0dcc3SMatthew G. Knepley /*@ 8938c0f0dcc3SMatthew G. Knepley DMMonitor - runs the user provided monitor routines, if they exist 8939c0f0dcc3SMatthew G. Knepley 894020f4b53cSBarry Smith Collective 8941c0f0dcc3SMatthew G. Knepley 89422fe279fdSBarry Smith Input Parameter: 8943bb7acecfSBarry Smith . dm - The `DM` 8944c0f0dcc3SMatthew G. Knepley 8945c0f0dcc3SMatthew G. Knepley Level: developer 8946c0f0dcc3SMatthew G. Knepley 894773ff1848SBarry Smith Developer Note: 8948a4e35b19SJacob Faibussowitsch Note should indicate when during the life of the `DM` the monitor is run. It appears to be 8949a4e35b19SJacob Faibussowitsch related to the discretization process seems rather specialized since some `DM` have no 8950a4e35b19SJacob Faibussowitsch concept of discretization. 8951bb7acecfSBarry Smith 89521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()` 8953c0f0dcc3SMatthew G. Knepley @*/ 8954d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitor(DM dm) 8955d71ae5a4SJacob Faibussowitsch { 8956c0f0dcc3SMatthew G. Knepley PetscInt m; 8957c0f0dcc3SMatthew G. Knepley 8958c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 89593ba16761SJacob Faibussowitsch if (!dm) PetscFunctionReturn(PETSC_SUCCESS); 8960c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 896148a46eb9SPierre Jolivet for (m = 0; m < dm->numbermonitors; ++m) PetscCall((*dm->monitor[m])(dm, dm->monitorcontext[m])); 89623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8963c0f0dcc3SMatthew G. Knepley } 89642e4af2aeSMatthew G. Knepley 89652e4af2aeSMatthew G. Knepley /*@ 8966bb7acecfSBarry Smith DMComputeError - Computes the error assuming the user has provided the exact solution functions 89672e4af2aeSMatthew G. Knepley 896820f4b53cSBarry Smith Collective 89692e4af2aeSMatthew G. Knepley 89702e4af2aeSMatthew G. Knepley Input Parameters: 8971bb7acecfSBarry Smith + dm - The `DM` 89726b867d5aSJose E. Roman - sol - The solution vector 89732e4af2aeSMatthew G. Knepley 89746b867d5aSJose E. Roman Input/Output Parameter: 897520f4b53cSBarry Smith . errors - An array of length Nf, the number of fields, or `NULL` for no output; on output 89766b867d5aSJose E. Roman contains the error in each field 89776b867d5aSJose E. Roman 89786b867d5aSJose E. Roman Output Parameter: 897920f4b53cSBarry Smith . errorVec - A vector to hold the cellwise error (may be `NULL`) 898020f4b53cSBarry Smith 898120f4b53cSBarry Smith Level: developer 89822e4af2aeSMatthew G. Knepley 8983bb7acecfSBarry Smith Note: 8984bb7acecfSBarry Smith The exact solutions come from the `PetscDS` object, and the time comes from `DMGetOutputSequenceNumber()`. 89852e4af2aeSMatthew G. Knepley 89861cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMGetRegionNumDS()`, `PetscDSGetExactSolution()`, `DMGetOutputSequenceNumber()` 89872e4af2aeSMatthew G. Knepley @*/ 8988d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeError(DM dm, Vec sol, PetscReal errors[], Vec *errorVec) 8989d71ae5a4SJacob Faibussowitsch { 89902e4af2aeSMatthew G. Knepley PetscErrorCode (**exactSol)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *); 89912e4af2aeSMatthew G. Knepley void **ctxs; 89922e4af2aeSMatthew G. Knepley PetscReal time; 89932e4af2aeSMatthew G. Knepley PetscInt Nf, f, Nds, s; 89942e4af2aeSMatthew G. Knepley 89952e4af2aeSMatthew G. Knepley PetscFunctionBegin; 89969566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 89979566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &exactSol, Nf, &ctxs)); 89989566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 89992e4af2aeSMatthew G. Knepley for (s = 0; s < Nds; ++s) { 90002e4af2aeSMatthew G. Knepley PetscDS ds; 90012e4af2aeSMatthew G. Knepley DMLabel label; 90022e4af2aeSMatthew G. Knepley IS fieldIS; 90032e4af2aeSMatthew G. Knepley const PetscInt *fields; 90042e4af2aeSMatthew G. Knepley PetscInt dsNf; 90052e4af2aeSMatthew G. Knepley 900607218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 90079566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 90089566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISGetIndices(fieldIS, &fields)); 90092e4af2aeSMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 90102e4af2aeSMatthew G. Knepley const PetscInt field = fields[f]; 90119566063dSJacob Faibussowitsch PetscCall(PetscDSGetExactSolution(ds, field, &exactSol[field], &ctxs[field])); 90122e4af2aeSMatthew G. Knepley } 90139566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISRestoreIndices(fieldIS, &fields)); 90142e4af2aeSMatthew G. Knepley } 9015ad540459SPierre Jolivet for (f = 0; f < Nf; ++f) PetscCheck(exactSol[f], PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "DS must contain exact solution functions in order to calculate error, missing for field %" PetscInt_FMT, f); 90169566063dSJacob Faibussowitsch PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time)); 90179566063dSJacob Faibussowitsch if (errors) PetscCall(DMComputeL2FieldDiff(dm, time, exactSol, ctxs, sol, errors)); 90182e4af2aeSMatthew G. Knepley if (errorVec) { 90192e4af2aeSMatthew G. Knepley DM edm; 90202e4af2aeSMatthew G. Knepley DMPolytopeType ct; 90212e4af2aeSMatthew G. Knepley PetscBool simplex; 90222e4af2aeSMatthew G. Knepley PetscInt dim, cStart, Nf; 90232e4af2aeSMatthew G. Knepley 90249566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &edm)); 90259566063dSJacob Faibussowitsch PetscCall(DMGetDimension(edm, &dim)); 90269566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 90279566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 90282e4af2aeSMatthew G. Knepley simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE; 90299566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 90302e4af2aeSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 90312e4af2aeSMatthew G. Knepley PetscFE fe, efe; 90322e4af2aeSMatthew G. Knepley PetscQuadrature q; 90332e4af2aeSMatthew G. Knepley const char *name; 90342e4af2aeSMatthew G. Knepley 90359566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe)); 90369566063dSJacob Faibussowitsch PetscCall(PetscFECreateLagrange(PETSC_COMM_SELF, dim, Nf, simplex, 0, PETSC_DETERMINE, &efe)); 90379566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)fe, &name)); 90389566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)efe, name)); 90399566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 90409566063dSJacob Faibussowitsch PetscCall(PetscFESetQuadrature(efe, q)); 90419566063dSJacob Faibussowitsch PetscCall(DMSetField(edm, f, NULL, (PetscObject)efe)); 90429566063dSJacob Faibussowitsch PetscCall(PetscFEDestroy(&efe)); 90432e4af2aeSMatthew G. Knepley } 90449566063dSJacob Faibussowitsch PetscCall(DMCreateDS(edm)); 90452e4af2aeSMatthew G. Knepley 90469566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(edm, errorVec)); 90479566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*errorVec, "Error")); 90489566063dSJacob Faibussowitsch PetscCall(DMPlexComputeL2DiffVec(dm, time, exactSol, ctxs, sol, *errorVec)); 90499566063dSJacob Faibussowitsch PetscCall(DMDestroy(&edm)); 90502e4af2aeSMatthew G. Knepley } 90519566063dSJacob Faibussowitsch PetscCall(PetscFree2(exactSol, ctxs)); 90523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 90532e4af2aeSMatthew G. Knepley } 90549a2a23afSMatthew G. Knepley 90559a2a23afSMatthew G. Knepley /*@ 9056bb7acecfSBarry Smith DMGetNumAuxiliaryVec - Get the number of auxiliary vectors associated with this `DM` 90579a2a23afSMatthew G. Knepley 905820f4b53cSBarry Smith Not Collective 90599a2a23afSMatthew G. Knepley 90609a2a23afSMatthew G. Knepley Input Parameter: 9061bb7acecfSBarry Smith . dm - The `DM` 90629a2a23afSMatthew G. Knepley 90639a2a23afSMatthew G. Knepley Output Parameter: 9064a5b23f4aSJose E. Roman . numAux - The number of auxiliary data vectors 90659a2a23afSMatthew G. Knepley 90669a2a23afSMatthew G. Knepley Level: advanced 90679a2a23afSMatthew G. Knepley 9068e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMGetAuxiliaryVec()` 90699a2a23afSMatthew G. Knepley @*/ 9070d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumAuxiliaryVec(DM dm, PetscInt *numAux) 9071d71ae5a4SJacob Faibussowitsch { 90729a2a23afSMatthew G. Knepley PetscFunctionBegin; 90739a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 90749566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetSize(dm->auxData, numAux)); 90753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 90769a2a23afSMatthew G. Knepley } 90779a2a23afSMatthew G. Knepley 90789a2a23afSMatthew G. Knepley /*@ 9079ac17215fSMatthew G. Knepley DMGetAuxiliaryVec - Get the auxiliary vector for region specified by the given label and value, and equation part 90809a2a23afSMatthew G. Knepley 908120f4b53cSBarry Smith Not Collective 90829a2a23afSMatthew G. Knepley 90839a2a23afSMatthew G. Knepley Input Parameters: 9084bb7acecfSBarry Smith + dm - The `DM` 9085bb7acecfSBarry Smith . label - The `DMLabel` 9086ac17215fSMatthew G. Knepley . value - The label value indicating the region 9087ac17215fSMatthew G. Knepley - part - The equation part, or 0 if unused 90889a2a23afSMatthew G. Knepley 90899a2a23afSMatthew G. Knepley Output Parameter: 9090bb7acecfSBarry Smith . aux - The `Vec` holding auxiliary field data 90919a2a23afSMatthew G. Knepley 90929bdbcad8SBarry Smith Level: advanced 90939bdbcad8SBarry Smith 9094bb7acecfSBarry Smith Note: 9095bb7acecfSBarry Smith If no auxiliary vector is found for this (label, value), (NULL, 0, 0) is checked as well. 909604c51a94SMatthew G. Knepley 9097e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryLabels()` 90989a2a23afSMatthew G. Knepley @*/ 9099d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec *aux) 9100d71ae5a4SJacob Faibussowitsch { 9101ac17215fSMatthew G. Knepley PetscHashAuxKey key, wild = {NULL, 0, 0}; 910204c51a94SMatthew G. Knepley PetscBool has; 91039a2a23afSMatthew G. Knepley 91049a2a23afSMatthew G. Knepley PetscFunctionBegin; 91059a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 91069a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 91079a2a23afSMatthew G. Knepley key.label = label; 91089a2a23afSMatthew G. Knepley key.value = value; 9109ac17215fSMatthew G. Knepley key.part = part; 91109566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxHas(dm->auxData, key, &has)); 91119566063dSJacob Faibussowitsch if (has) PetscCall(PetscHMapAuxGet(dm->auxData, key, aux)); 91129566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxGet(dm->auxData, wild, aux)); 91133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91149a2a23afSMatthew G. Knepley } 91159a2a23afSMatthew G. Knepley 91169a2a23afSMatthew G. Knepley /*@ 9117bb7acecfSBarry Smith DMSetAuxiliaryVec - Set an auxiliary vector for region specified by the given label and value, and equation part 91189a2a23afSMatthew G. Knepley 911920f4b53cSBarry Smith Not Collective because auxiliary vectors are not parallel 91209a2a23afSMatthew G. Knepley 91219a2a23afSMatthew G. Knepley Input Parameters: 9122bb7acecfSBarry Smith + dm - The `DM` 9123bb7acecfSBarry Smith . label - The `DMLabel` 91249a2a23afSMatthew G. Knepley . value - The label value indicating the region 9125ac17215fSMatthew G. Knepley . part - The equation part, or 0 if unused 9126bb7acecfSBarry Smith - aux - The `Vec` holding auxiliary field data 91279a2a23afSMatthew G. Knepley 91289a2a23afSMatthew G. Knepley Level: advanced 91299a2a23afSMatthew G. Knepley 9130e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMCopyAuxiliaryVec()` 91319a2a23afSMatthew G. Knepley @*/ 9132d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec aux) 9133d71ae5a4SJacob Faibussowitsch { 91349a2a23afSMatthew G. Knepley Vec old; 91359a2a23afSMatthew G. Knepley PetscHashAuxKey key; 91369a2a23afSMatthew G. Knepley 91379a2a23afSMatthew G. Knepley PetscFunctionBegin; 91389a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 91399a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 91409a2a23afSMatthew G. Knepley key.label = label; 91419a2a23afSMatthew G. Knepley key.value = value; 9142ac17215fSMatthew G. Knepley key.part = part; 91439566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGet(dm->auxData, key, &old)); 91449566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)aux)); 91459566063dSJacob Faibussowitsch if (!aux) PetscCall(PetscHMapAuxDel(dm->auxData, key)); 91469566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxSet(dm->auxData, key, aux)); 9147d705d0eaSStefano Zampini PetscCall(VecDestroy(&old)); 91483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91499a2a23afSMatthew G. Knepley } 91509a2a23afSMatthew G. Knepley 91519a2a23afSMatthew G. Knepley /*@C 9152bb7acecfSBarry Smith DMGetAuxiliaryLabels - Get the labels, values, and parts for all auxiliary vectors in this `DM` 91539a2a23afSMatthew G. Knepley 915420f4b53cSBarry Smith Not Collective 91559a2a23afSMatthew G. Knepley 91569a2a23afSMatthew G. Knepley Input Parameter: 9157bb7acecfSBarry Smith . dm - The `DM` 91589a2a23afSMatthew G. Knepley 91599a2a23afSMatthew G. Knepley Output Parameters: 9160bb7acecfSBarry Smith + labels - The `DMLabel`s for each `Vec` 9161bb7acecfSBarry Smith . values - The label values for each `Vec` 9162bb7acecfSBarry Smith - parts - The equation parts for each `Vec` 91639a2a23afSMatthew G. Knepley 91649bdbcad8SBarry Smith Level: advanced 91659bdbcad8SBarry Smith 9166bb7acecfSBarry Smith Note: 9167bb7acecfSBarry Smith The arrays passed in must be at least as large as `DMGetNumAuxiliaryVec()`. 91689a2a23afSMatthew G. Knepley 9169e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMCopyAuxiliaryVec()` 91709a2a23afSMatthew G. Knepley @*/ 9171d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryLabels(DM dm, DMLabel labels[], PetscInt values[], PetscInt parts[]) 9172d71ae5a4SJacob Faibussowitsch { 91739a2a23afSMatthew G. Knepley PetscHashAuxKey *keys; 91749a2a23afSMatthew G. Knepley PetscInt n, i, off = 0; 91759a2a23afSMatthew G. Knepley 91769a2a23afSMatthew G. Knepley PetscFunctionBegin; 91779a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 91784f572ea9SToby Isaac PetscAssertPointer(labels, 2); 91794f572ea9SToby Isaac PetscAssertPointer(values, 3); 91804f572ea9SToby Isaac PetscAssertPointer(parts, 4); 91819566063dSJacob Faibussowitsch PetscCall(DMGetNumAuxiliaryVec(dm, &n)); 91829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &keys)); 91839566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetKeys(dm->auxData, &off, keys)); 91849371c9d4SSatish Balay for (i = 0; i < n; ++i) { 91859371c9d4SSatish Balay labels[i] = keys[i].label; 91869371c9d4SSatish Balay values[i] = keys[i].value; 91879371c9d4SSatish Balay parts[i] = keys[i].part; 91889371c9d4SSatish Balay } 91899566063dSJacob Faibussowitsch PetscCall(PetscFree(keys)); 91903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91919a2a23afSMatthew G. Knepley } 91929a2a23afSMatthew G. Knepley 91939a2a23afSMatthew G. Knepley /*@ 9194bb7acecfSBarry Smith DMCopyAuxiliaryVec - Copy the auxiliary vector data on a `DM` to a new `DM` 91959a2a23afSMatthew G. Knepley 919620f4b53cSBarry Smith Not Collective 91979a2a23afSMatthew G. Knepley 91989a2a23afSMatthew G. Knepley Input Parameter: 9199bb7acecfSBarry Smith . dm - The `DM` 92009a2a23afSMatthew G. Knepley 92019a2a23afSMatthew G. Knepley Output Parameter: 9202bb7acecfSBarry Smith . dmNew - The new `DM`, now with the same auxiliary data 92039a2a23afSMatthew G. Knepley 92049a2a23afSMatthew G. Knepley Level: advanced 92059a2a23afSMatthew G. Knepley 9206bb7acecfSBarry Smith Note: 9207bb7acecfSBarry Smith This is a shallow copy of the auxiliary vectors 9208bb7acecfSBarry Smith 9209e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 92109a2a23afSMatthew G. Knepley @*/ 9211d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyAuxiliaryVec(DM dm, DM dmNew) 9212d71ae5a4SJacob Faibussowitsch { 92139a2a23afSMatthew G. Knepley PetscFunctionBegin; 92149a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9215d705d0eaSStefano Zampini PetscValidHeaderSpecific(dmNew, DM_CLASSID, 2); 9216d705d0eaSStefano Zampini if (dm == dmNew) PetscFunctionReturn(PETSC_SUCCESS); 9217e4d5475eSStefano Zampini PetscCall(DMClearAuxiliaryVec(dmNew)); 9218e4d5475eSStefano Zampini 9219e4d5475eSStefano Zampini PetscCall(PetscHMapAuxDestroy(&dmNew->auxData)); 92209566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDuplicate(dm->auxData, &dmNew->auxData)); 9221d705d0eaSStefano Zampini { 9222d705d0eaSStefano Zampini Vec *auxData; 9223d705d0eaSStefano Zampini PetscInt n, i, off = 0; 9224d705d0eaSStefano Zampini 9225d705d0eaSStefano Zampini PetscCall(PetscHMapAuxGetSize(dmNew->auxData, &n)); 9226d705d0eaSStefano Zampini PetscCall(PetscMalloc1(n, &auxData)); 9227d705d0eaSStefano Zampini PetscCall(PetscHMapAuxGetVals(dmNew->auxData, &off, auxData)); 9228d705d0eaSStefano Zampini for (i = 0; i < n; ++i) PetscCall(PetscObjectReference((PetscObject)auxData[i])); 9229d705d0eaSStefano Zampini PetscCall(PetscFree(auxData)); 9230e4d5475eSStefano Zampini } 9231e4d5475eSStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 9232e4d5475eSStefano Zampini } 9233e4d5475eSStefano Zampini 9234e4d5475eSStefano Zampini /*@ 9235e4d5475eSStefano Zampini DMClearAuxiliaryVec - Destroys the auxiliary vector information and creates a new empty one 9236e4d5475eSStefano Zampini 9237e4d5475eSStefano Zampini Not Collective 9238e4d5475eSStefano Zampini 9239e4d5475eSStefano Zampini Input Parameter: 9240e4d5475eSStefano Zampini . dm - The `DM` 9241e4d5475eSStefano Zampini 9242e4d5475eSStefano Zampini Level: advanced 9243e4d5475eSStefano Zampini 9244e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMCopyAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 9245e4d5475eSStefano Zampini @*/ 9246e4d5475eSStefano Zampini PetscErrorCode DMClearAuxiliaryVec(DM dm) 9247e4d5475eSStefano Zampini { 9248e4d5475eSStefano Zampini Vec *auxData; 9249e4d5475eSStefano Zampini PetscInt n, i, off = 0; 9250e4d5475eSStefano Zampini 9251e4d5475eSStefano Zampini PetscFunctionBegin; 9252e4d5475eSStefano Zampini PetscCall(PetscHMapAuxGetSize(dm->auxData, &n)); 9253d705d0eaSStefano Zampini PetscCall(PetscMalloc1(n, &auxData)); 9254e4d5475eSStefano Zampini PetscCall(PetscHMapAuxGetVals(dm->auxData, &off, auxData)); 9255d705d0eaSStefano Zampini for (i = 0; i < n; ++i) PetscCall(VecDestroy(&auxData[i])); 9256d705d0eaSStefano Zampini PetscCall(PetscFree(auxData)); 9257e4d5475eSStefano Zampini PetscCall(PetscHMapAuxDestroy(&dm->auxData)); 9258e4d5475eSStefano Zampini PetscCall(PetscHMapAuxCreate(&dm->auxData)); 92593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92609a2a23afSMatthew G. Knepley } 9261b5a892a1SMatthew G. Knepley 9262b5a892a1SMatthew G. Knepley /*@C 9263bb7acecfSBarry Smith DMPolytopeMatchOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9264b5a892a1SMatthew G. Knepley 926520f4b53cSBarry Smith Not Collective 9266b5a892a1SMatthew G. Knepley 9267b5a892a1SMatthew G. Knepley Input Parameters: 9268bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9269b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9270b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9271b5a892a1SMatthew G. Knepley 9272b5a892a1SMatthew G. Knepley Output Parameters: 9273bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9274b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9275b5a892a1SMatthew G. Knepley 9276b5a892a1SMatthew G. Knepley Level: advanced 9277b5a892a1SMatthew G. Knepley 9278bb7acecfSBarry Smith Note: 9279bb7acecfSBarry Smith An arrangement is a face order combined with an orientation for each face 9280bb7acecfSBarry Smith 928185036b15SMatthew G. Knepley Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2 9282bb7acecfSBarry Smith that labels each arrangement (face ordering plus orientation for each face). 9283bb7acecfSBarry Smith 9284bb7acecfSBarry Smith See `DMPolytopeMatchVertexOrientation()` to find a new vertex orientation that takes the source vertex arrangement to the target vertex arrangement 9285bb7acecfSBarry Smith 92861cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetVertexOrientation()` 9287b5a892a1SMatthew G. Knepley @*/ 9288d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt, PetscBool *found) 9289d71ae5a4SJacob Faibussowitsch { 9290b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetConeSize(ct); 929185036b15SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2; 9292b5a892a1SMatthew G. Knepley PetscInt o, c; 9293b5a892a1SMatthew G. Knepley 9294b5a892a1SMatthew G. Knepley PetscFunctionBegin; 92959371c9d4SSatish Balay if (!nO) { 92969371c9d4SSatish Balay *ornt = 0; 92979371c9d4SSatish Balay *found = PETSC_TRUE; 92983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92999371c9d4SSatish Balay } 9300b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 930185036b15SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangement(ct, o); 9302b5a892a1SMatthew G. Knepley 93039371c9d4SSatish Balay for (c = 0; c < cS; ++c) 93049371c9d4SSatish Balay if (sourceCone[arr[c * 2]] != targetCone[c]) break; 93059371c9d4SSatish Balay if (c == cS) { 93069371c9d4SSatish Balay *ornt = o; 93079371c9d4SSatish Balay break; 93089371c9d4SSatish Balay } 9309b5a892a1SMatthew G. Knepley } 9310b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 93113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9312b5a892a1SMatthew G. Knepley } 9313b5a892a1SMatthew G. Knepley 9314b5a892a1SMatthew G. Knepley /*@C 9315bb7acecfSBarry Smith DMPolytopeGetOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9316b5a892a1SMatthew G. Knepley 931720f4b53cSBarry Smith Not Collective 9318b5a892a1SMatthew G. Knepley 9319b5a892a1SMatthew G. Knepley Input Parameters: 9320bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9321b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9322b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9323b5a892a1SMatthew G. Knepley 93242fe279fdSBarry Smith Output Parameter: 9325bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9326b5a892a1SMatthew G. Knepley 9327b5a892a1SMatthew G. Knepley Level: advanced 9328b5a892a1SMatthew G. Knepley 9329bb7acecfSBarry Smith Note: 9330bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchOrientation()` except it will generate an error if no suitable orientation can be found. 9331bb7acecfSBarry Smith 933273ff1848SBarry Smith Developer Note: 9333bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchOrientation()` and error if none is found 9334bb7acecfSBarry Smith 93351cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchOrientation()`, `DMPolytopeGetVertexOrientation()`, `DMPolytopeMatchVertexOrientation()` 9336b5a892a1SMatthew G. Knepley @*/ 9337d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9338d71ae5a4SJacob Faibussowitsch { 9339b5a892a1SMatthew G. Knepley PetscBool found; 9340b5a892a1SMatthew G. Knepley 9341b5a892a1SMatthew G. Knepley PetscFunctionBegin; 93429566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchOrientation(ct, sourceCone, targetCone, ornt, &found)); 93437a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 93443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9345b5a892a1SMatthew G. Knepley } 9346b5a892a1SMatthew G. Knepley 9347b5a892a1SMatthew G. Knepley /*@C 9348bb7acecfSBarry Smith DMPolytopeMatchVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9349b5a892a1SMatthew G. Knepley 935020f4b53cSBarry Smith Not Collective 9351b5a892a1SMatthew G. Knepley 9352b5a892a1SMatthew G. Knepley Input Parameters: 9353bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9354b5a892a1SMatthew G. Knepley . sourceVert - The source arrangement of vertices 9355b5a892a1SMatthew G. Knepley - targetVert - The target arrangement of vertices 9356b5a892a1SMatthew G. Knepley 9357b5a892a1SMatthew G. Knepley Output Parameters: 9358bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9359b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9360b5a892a1SMatthew G. Knepley 9361b5a892a1SMatthew G. Knepley Level: advanced 9362b5a892a1SMatthew G. Knepley 936373ff1848SBarry Smith Notes: 9364bb7acecfSBarry Smith An arrangement is a vertex order 9365bb7acecfSBarry Smith 936685036b15SMatthew G. Knepley Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2 9367bb7acecfSBarry Smith that labels each arrangement (vertex ordering). 9368bb7acecfSBarry Smith 9369bb7acecfSBarry Smith See `DMPolytopeMatchOrientation()` to find a new face orientation that takes the source face arrangement to the target face arrangement 9370bb7acecfSBarry Smith 937185036b15SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchOrientation()`, `DMPolytopeTypeGetNumVertices()`, `DMPolytopeTypeGetVertexArrangement()` 9372b5a892a1SMatthew G. Knepley @*/ 9373d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchVertexOrientation(DMPolytopeType ct, const PetscInt sourceVert[], const PetscInt targetVert[], PetscInt *ornt, PetscBool *found) 9374d71ae5a4SJacob Faibussowitsch { 9375b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetNumVertices(ct); 937685036b15SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2; 9377b5a892a1SMatthew G. Knepley PetscInt o, c; 9378b5a892a1SMatthew G. Knepley 9379b5a892a1SMatthew G. Knepley PetscFunctionBegin; 93809371c9d4SSatish Balay if (!nO) { 93819371c9d4SSatish Balay *ornt = 0; 93829371c9d4SSatish Balay *found = PETSC_TRUE; 93833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 93849371c9d4SSatish Balay } 9385b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 938685036b15SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetVertexArrangement(ct, o); 9387b5a892a1SMatthew G. Knepley 93889371c9d4SSatish Balay for (c = 0; c < cS; ++c) 93899371c9d4SSatish Balay if (sourceVert[arr[c]] != targetVert[c]) break; 93909371c9d4SSatish Balay if (c == cS) { 93919371c9d4SSatish Balay *ornt = o; 93929371c9d4SSatish Balay break; 93939371c9d4SSatish Balay } 9394b5a892a1SMatthew G. Knepley } 9395b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 93963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9397b5a892a1SMatthew G. Knepley } 9398b5a892a1SMatthew G. Knepley 9399b5a892a1SMatthew G. Knepley /*@C 9400bb7acecfSBarry Smith DMPolytopeGetVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9401b5a892a1SMatthew G. Knepley 940220f4b53cSBarry Smith Not Collective 9403b5a892a1SMatthew G. Knepley 9404b5a892a1SMatthew G. Knepley Input Parameters: 9405bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9406b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of vertices 9407b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of vertices 9408b5a892a1SMatthew G. Knepley 94092fe279fdSBarry Smith Output Parameter: 9410bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9411b5a892a1SMatthew G. Knepley 9412b5a892a1SMatthew G. Knepley Level: advanced 9413b5a892a1SMatthew G. Knepley 9414bb7acecfSBarry Smith Note: 9415bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchVertexOrientation()` except it errors if not orientation is possible. 9416bb7acecfSBarry Smith 941773ff1848SBarry Smith Developer Note: 9418bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchVertexOrientation()` and error if none is found 9419bb7acecfSBarry Smith 94201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetOrientation()` 9421b5a892a1SMatthew G. Knepley @*/ 9422d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetVertexOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9423d71ae5a4SJacob Faibussowitsch { 9424b5a892a1SMatthew G. Knepley PetscBool found; 9425b5a892a1SMatthew G. Knepley 9426b5a892a1SMatthew G. Knepley PetscFunctionBegin; 94279566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchVertexOrientation(ct, sourceCone, targetCone, ornt, &found)); 94287a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 94293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9430b5a892a1SMatthew G. Knepley } 9431012bc364SMatthew G. Knepley 9432012bc364SMatthew G. Knepley /*@C 9433012bc364SMatthew G. Knepley DMPolytopeInCellTest - Check whether a point lies inside the reference cell of given type 9434012bc364SMatthew G. Knepley 943520f4b53cSBarry Smith Not Collective 9436012bc364SMatthew G. Knepley 9437012bc364SMatthew G. Knepley Input Parameters: 9438bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9439012bc364SMatthew G. Knepley - point - Coordinates of the point 9440012bc364SMatthew G. Knepley 94412fe279fdSBarry Smith Output Parameter: 9442012bc364SMatthew G. Knepley . inside - Flag indicating whether the point is inside the reference cell of given type 9443012bc364SMatthew G. Knepley 9444012bc364SMatthew G. Knepley Level: advanced 9445012bc364SMatthew G. Knepley 94461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMLocatePoints()` 9447012bc364SMatthew G. Knepley @*/ 9448d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeInCellTest(DMPolytopeType ct, const PetscReal point[], PetscBool *inside) 9449d71ae5a4SJacob Faibussowitsch { 9450012bc364SMatthew G. Knepley PetscReal sum = 0.0; 9451012bc364SMatthew G. Knepley PetscInt d; 9452012bc364SMatthew G. Knepley 9453012bc364SMatthew G. Knepley PetscFunctionBegin; 9454012bc364SMatthew G. Knepley *inside = PETSC_TRUE; 9455012bc364SMatthew G. Knepley switch (ct) { 9456012bc364SMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 9457012bc364SMatthew G. Knepley case DM_POLYTOPE_TETRAHEDRON: 9458012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) { 94599371c9d4SSatish Balay if (point[d] < -1.0) { 94609371c9d4SSatish Balay *inside = PETSC_FALSE; 94619371c9d4SSatish Balay break; 94629371c9d4SSatish Balay } 9463012bc364SMatthew G. Knepley sum += point[d]; 9464012bc364SMatthew G. Knepley } 94659371c9d4SSatish Balay if (sum > PETSC_SMALL) { 94669371c9d4SSatish Balay *inside = PETSC_FALSE; 94679371c9d4SSatish Balay break; 94689371c9d4SSatish Balay } 9469012bc364SMatthew G. Knepley break; 9470012bc364SMatthew G. Knepley case DM_POLYTOPE_QUADRILATERAL: 9471012bc364SMatthew G. Knepley case DM_POLYTOPE_HEXAHEDRON: 9472012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) 94739371c9d4SSatish Balay if (PetscAbsReal(point[d]) > 1. + PETSC_SMALL) { 94749371c9d4SSatish Balay *inside = PETSC_FALSE; 9475012bc364SMatthew G. Knepley break; 94769371c9d4SSatish Balay } 94779371c9d4SSatish Balay break; 9478d71ae5a4SJacob Faibussowitsch default: 9479d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported polytope type %s", DMPolytopeTypes[ct]); 9480012bc364SMatthew G. Knepley } 94813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9482012bc364SMatthew G. Knepley } 9483adc21957SMatthew G. Knepley 9484adc21957SMatthew G. Knepley /*@ 9485adc21957SMatthew G. Knepley DMReorderSectionSetDefault - Set flag indicating whether the local section should be reordered by default 9486adc21957SMatthew G. Knepley 9487adc21957SMatthew G. Knepley Logically collective 9488adc21957SMatthew G. Knepley 9489adc21957SMatthew G. Knepley Input Parameters: 9490adc21957SMatthew G. Knepley + dm - The DM 9491adc21957SMatthew G. Knepley - reorder - Flag for reordering 9492adc21957SMatthew G. Knepley 9493adc21957SMatthew G. Knepley Level: intermediate 9494adc21957SMatthew G. Knepley 9495adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetDefault()` 9496adc21957SMatthew G. Knepley @*/ 9497adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetDefault(DM dm, DMReorderDefaultFlag reorder) 9498adc21957SMatthew G. Knepley { 9499adc21957SMatthew G. Knepley PetscFunctionBegin; 9500adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9501adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionSetDefault_C", (DM, DMReorderDefaultFlag), (dm, reorder)); 9502adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9503adc21957SMatthew G. Knepley } 9504adc21957SMatthew G. Knepley 9505adc21957SMatthew G. Knepley /*@ 9506adc21957SMatthew G. Knepley DMReorderSectionGetDefault - Get flag indicating whether the local section should be reordered by default 9507adc21957SMatthew G. Knepley 9508adc21957SMatthew G. Knepley Not collective 9509adc21957SMatthew G. Knepley 9510adc21957SMatthew G. Knepley Input Parameter: 9511adc21957SMatthew G. Knepley . dm - The DM 9512adc21957SMatthew G. Knepley 9513adc21957SMatthew G. Knepley Output Parameter: 9514adc21957SMatthew G. Knepley . reorder - Flag for reordering 9515adc21957SMatthew G. Knepley 9516adc21957SMatthew G. Knepley Level: intermediate 9517adc21957SMatthew G. Knepley 9518adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()` 9519adc21957SMatthew G. Knepley @*/ 9520adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetDefault(DM dm, DMReorderDefaultFlag *reorder) 9521adc21957SMatthew G. Knepley { 9522adc21957SMatthew G. Knepley PetscFunctionBegin; 9523adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9524adc21957SMatthew G. Knepley PetscAssertPointer(reorder, 2); 9525adc21957SMatthew G. Knepley *reorder = DM_REORDER_DEFAULT_NOTSET; 9526adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionGetDefault_C", (DM, DMReorderDefaultFlag *), (dm, reorder)); 9527adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9528adc21957SMatthew G. Knepley } 9529adc21957SMatthew G. Knepley 9530adc21957SMatthew G. Knepley /*@C 9531adc21957SMatthew G. Knepley DMReorderSectionSetType - Set the type of local section reordering 9532adc21957SMatthew G. Knepley 9533adc21957SMatthew G. Knepley Logically collective 9534adc21957SMatthew G. Knepley 9535adc21957SMatthew G. Knepley Input Parameters: 9536adc21957SMatthew G. Knepley + dm - The DM 9537adc21957SMatthew G. Knepley - reorder - The reordering method 9538adc21957SMatthew G. Knepley 9539adc21957SMatthew G. Knepley Level: intermediate 9540adc21957SMatthew G. Knepley 9541adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetType()`, `DMReorderSectionSetDefault()` 9542adc21957SMatthew G. Knepley @*/ 9543adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetType(DM dm, MatOrderingType reorder) 9544adc21957SMatthew G. Knepley { 9545adc21957SMatthew G. Knepley PetscFunctionBegin; 9546adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9547adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionSetType_C", (DM, MatOrderingType), (dm, reorder)); 9548adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9549adc21957SMatthew G. Knepley } 9550adc21957SMatthew G. Knepley 9551adc21957SMatthew G. Knepley /*@C 9552adc21957SMatthew G. Knepley DMReorderSectionGetType - Get the reordering type for the local section 9553adc21957SMatthew G. Knepley 9554adc21957SMatthew G. Knepley Not collective 9555adc21957SMatthew G. Knepley 9556adc21957SMatthew G. Knepley Input Parameter: 9557adc21957SMatthew G. Knepley . dm - The DM 9558adc21957SMatthew G. Knepley 9559adc21957SMatthew G. Knepley Output Parameter: 9560adc21957SMatthew G. Knepley . reorder - The reordering method 9561adc21957SMatthew G. Knepley 9562adc21957SMatthew G. Knepley Level: intermediate 9563adc21957SMatthew G. Knepley 9564adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()`, `DMReorderSectionGetDefault()` 9565adc21957SMatthew G. Knepley @*/ 9566adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetType(DM dm, MatOrderingType *reorder) 9567adc21957SMatthew G. Knepley { 9568adc21957SMatthew G. Knepley PetscFunctionBegin; 9569adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9570adc21957SMatthew G. Knepley PetscAssertPointer(reorder, 2); 9571adc21957SMatthew G. Knepley *reorder = NULL; 9572adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionGetType_C", (DM, MatOrderingType *), (dm, reorder)); 9573adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9574adc21957SMatthew G. Knepley } 9575