1d0295fc0SJunchao Zhang #include <petscvec.h> 2af0996ceSBarry Smith #include <petsc/private/dmimpl.h> /*I "petscdm.h" I*/ 3c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 4e6f8dbb6SToby Isaac #include <petsc/private/petscdsimpl.h> /*I "petscds.h" I*/ 53e922f36SToby Isaac #include <petscdmplex.h> 6d2b2dc1eSMatthew G. Knepley #include <petscdmceed.h> 7f19dbd58SToby Isaac #include <petscdmfield.h> 80c312b8eSJed Brown #include <petscsf.h> 92764a2aaSMatthew G. Knepley #include <petscds.h> 1047c6ae99SBarry Smith 11f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 12f918ec44SMatthew G. Knepley #include <petscfeceed.h> 13f918ec44SMatthew G. Knepley #endif 14f918ec44SMatthew G. Knepley 15732e2eb9SMatthew G Knepley PetscClassId DM_CLASSID; 16d67d17b1SMatthew G. Knepley PetscClassId DMLABEL_CLASSID; 17708be2fdSJed Brown PetscLogEvent DM_Convert, DM_GlobalToLocal, DM_LocalToGlobal, DM_LocalToLocal, DM_LocatePoints, DM_Coarsen, DM_Refine, DM_CreateInterpolation, DM_CreateRestriction, DM_CreateInjection, DM_CreateMatrix, DM_CreateMassMatrix, DM_Load, DM_AdaptInterpolator, DM_ProjectFunction; 1867a56275SMatthew G Knepley 19ea78f98cSLisandro Dalcin const char *const DMBoundaryTypes[] = {"NONE", "GHOSTED", "MIRROR", "PERIODIC", "TWIST", "DMBoundaryType", "DM_BOUNDARY_", NULL}; 20d1b3049bSMatthew G. Knepley const char *const DMBoundaryConditionTypes[] = {"INVALID", "ESSENTIAL", "NATURAL", "INVALID", "INVALID", "ESSENTIAL_FIELD", "NATURAL_FIELD", "INVALID", "INVALID", "ESSENTIAL_BD_FIELD", "NATURAL_RIEMANN", "DMBoundaryConditionType", "DM_BC_", NULL}; 210e762ea3SJed Brown const char *const DMBlockingTypes[] = {"TOPOLOGICAL_POINT", "FIELD_NODE", "DMBlockingType", "DM_BLOCKING_", NULL}; 22476787b7SMatthew G. Knepley const char *const DMPolytopeTypes[] = 23476787b7SMatthew G. Knepley {"vertex", "segment", "tensor_segment", "triangle", "quadrilateral", "tensor_quad", "tetrahedron", "hexahedron", "triangular_prism", "tensor_triangular_prism", "tensor_quadrilateral_prism", "pyramid", "FV_ghost_cell", "interior_ghost_cell", 24476787b7SMatthew G. Knepley "unknown", "unknown_cell", "unknown_face", "invalid", "DMPolytopeType", "DM_POLYTOPE_", NULL}; 252cbb9b06SVaclav Hapla const char *const DMCopyLabelsModes[] = {"replace", "keep", "fail", "DMCopyLabelsMode", "DM_COPY_LABELS_", NULL}; 2660c22052SBarry Smith 27a4121054SBarry Smith /*@ 28bb7acecfSBarry Smith DMCreate - Creates an empty `DM` object. `DM`s are the abstract objects in PETSc that mediate between meshes and discretizations and the 29bb7acecfSBarry Smith algebraic solvers, time integrators, and optimization algorithms. 30a4121054SBarry Smith 31d083f849SBarry Smith Collective 32a4121054SBarry Smith 33a4121054SBarry Smith Input Parameter: 34bb7acecfSBarry Smith . comm - The communicator for the `DM` object 35a4121054SBarry Smith 36a4121054SBarry Smith Output Parameter: 37bb7acecfSBarry Smith . dm - The `DM` object 38a4121054SBarry Smith 39a4121054SBarry Smith Level: beginner 40a4121054SBarry Smith 41bb7acecfSBarry Smith Notes: 42bb7acecfSBarry Smith See `DMType` for a brief summary of available `DM`. 43bb7acecfSBarry Smith 44bb7acecfSBarry Smith The type must then be set with `DMSetType()`. If you never call `DMSetType()` it will generate an 45bb7acecfSBarry Smith error when you try to use the dm. 46bb7acecfSBarry Smith 471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMType`, `DMDACreate()`, `DMDA`, `DMSLICED`, `DMCOMPOSITE`, `DMPLEX`, `DMMOAB`, `DMNETWORK` 48a4121054SBarry Smith @*/ 49d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreate(MPI_Comm comm, DM *dm) 50d71ae5a4SJacob Faibussowitsch { 51a4121054SBarry Smith DM v; 52e5e52638SMatthew G. Knepley PetscDS ds; 53a4121054SBarry Smith 54a4121054SBarry Smith PetscFunctionBegin; 554f572ea9SToby Isaac PetscAssertPointer(dm, 2); 56377f809aSBarry Smith 579566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 589566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(v, DM_CLASSID, "DM", "Distribution Manager", "DM", comm, DMDestroy, DMView)); 5962e5d2d2SJDBetteridge ((PetscObject)v)->non_cyclic_references = &DMCountNonCyclicReferences; 6049be4549SMatthew G. Knepley v->setupcalled = PETSC_FALSE; 6149be4549SMatthew G. Knepley v->setfromoptionscalled = PETSC_FALSE; 620298fd71SBarry Smith v->ltogmap = NULL; 63a4ea9b21SRichard Tran Mills v->bind_below = 0; 641411c6eeSJed Brown v->bs = 1; 65171400e9SBarry Smith v->coloringtype = IS_COLORING_GLOBAL; 669566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sf)); 679566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sectionSF)); 68c58f1c22SToby Isaac v->labels = NULL; 6934aa8a36SMatthew G. Knepley v->adjacency[0] = PETSC_FALSE; 7034aa8a36SMatthew G. Knepley v->adjacency[1] = PETSC_TRUE; 71c58f1c22SToby Isaac v->depthLabel = NULL; 72ba2698f1SMatthew G. Knepley v->celltypeLabel = NULL; 731bb6d2a8SBarry Smith v->localSection = NULL; 741bb6d2a8SBarry Smith v->globalSection = NULL; 753b8ba7d1SJed Brown v->defaultConstraint.section = NULL; 763b8ba7d1SJed Brown v->defaultConstraint.mat = NULL; 7779769bd5SJed Brown v->defaultConstraint.bias = NULL; 786858538eSMatthew G. Knepley v->coordinates[0].dim = PETSC_DEFAULT; 796858538eSMatthew G. Knepley v->coordinates[1].dim = PETSC_DEFAULT; 806858538eSMatthew G. Knepley v->sparseLocalize = PETSC_TRUE; 8196173672SStefano Zampini v->dim = PETSC_DETERMINE; 82435a35e8SMatthew G Knepley { 83435a35e8SMatthew G Knepley PetscInt i; 84435a35e8SMatthew G Knepley for (i = 0; i < 10; ++i) { 850298fd71SBarry Smith v->nullspaceConstructors[i] = NULL; 86f9d4088aSMatthew G. Knepley v->nearnullspaceConstructors[i] = NULL; 87435a35e8SMatthew G Knepley } 88435a35e8SMatthew G Knepley } 899566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 9007218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(v, NULL, NULL, ds, NULL)); 919566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 929566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxCreate(&v->auxData)); 9314f150ffSMatthew G. Knepley v->dmBC = NULL; 94a8fb8f29SToby Isaac v->coarseMesh = NULL; 95f4d763aaSMatthew G. Knepley v->outputSequenceNum = -1; 96cdb7a50dSMatthew G. Knepley v->outputSequenceVal = 0.0; 979566063dSJacob Faibussowitsch PetscCall(DMSetVecType(v, VECSTANDARD)); 989566063dSJacob Faibussowitsch PetscCall(DMSetMatType(v, MATAIJ)); 994a7a4c06SLawrence Mitchell 1001411c6eeSJed Brown *dm = v; 1013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 102a4121054SBarry Smith } 103a4121054SBarry Smith 10438221697SMatthew G. Knepley /*@ 105bb7acecfSBarry Smith DMClone - Creates a `DM` object with the same topology as the original. 10638221697SMatthew G. Knepley 107d083f849SBarry Smith Collective 10838221697SMatthew G. Knepley 10938221697SMatthew G. Knepley Input Parameter: 110bb7acecfSBarry Smith . dm - The original `DM` object 11138221697SMatthew G. Knepley 11238221697SMatthew G. Knepley Output Parameter: 113bb7acecfSBarry Smith . newdm - The new `DM` object 11438221697SMatthew G. Knepley 11538221697SMatthew G. Knepley Level: beginner 11638221697SMatthew G. Knepley 1171cb8cacdSPatrick Sanan Notes: 118bb7acecfSBarry Smith For some `DM` implementations this is a shallow clone, the result of which may share (reference counted) information with its parent. For example, 119bb7acecfSBarry Smith `DMClone()` applied to a `DMPLEX` object will result in a new `DMPLEX` that shares the topology with the original `DMPLEX`. It does not 120bb7acecfSBarry Smith share the `PetscSection` of the original `DM`. 1211bb6d2a8SBarry Smith 122bb7acecfSBarry Smith The clone is considered set up if the original has been set up. 12389706ed2SPatrick Sanan 124bb7acecfSBarry Smith Use `DMConvert()` for a general way to create new `DM` from a given `DM` 125bb7acecfSBarry Smith 12660225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMSetType()`, `DMSetLocalSection()`, `DMSetGlobalSection()`, `DMPLEX`, `DMConvert()` 12738221697SMatthew G. Knepley @*/ 128d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClone(DM dm, DM *newdm) 129d71ae5a4SJacob Faibussowitsch { 13038221697SMatthew G. Knepley PetscSF sf; 13138221697SMatthew G. Knepley Vec coords; 13238221697SMatthew G. Knepley void *ctx; 133ec196627SMatthew G. Knepley MatOrderingType otype; 134ec196627SMatthew G. Knepley DMReorderDefaultFlag flg; 1356858538eSMatthew G. Knepley PetscInt dim, cdim, i; 13638221697SMatthew G. Knepley 13738221697SMatthew G. Knepley PetscFunctionBegin; 13838221697SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1394f572ea9SToby Isaac PetscAssertPointer(newdm, 2); 1409566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), newdm)); 1419566063dSJacob Faibussowitsch PetscCall(DMCopyLabels(dm, *newdm, PETSC_COPY_VALUES, PETSC_TRUE, DM_COPY_LABELS_FAIL)); 142ddf8437dSMatthew G. Knepley (*newdm)->leveldown = dm->leveldown; 143ddf8437dSMatthew G. Knepley (*newdm)->levelup = dm->levelup; 144c8a6034eSMark (*newdm)->prealloc_only = dm->prealloc_only; 145fc214432SJed Brown (*newdm)->prealloc_skip = dm->prealloc_skip; 1469566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->vectype)); 1479566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*newdm)->vectype)); 1489566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->mattype)); 1499566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*newdm)->mattype)); 1509566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 1519566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*newdm, dim)); 152dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, clone, newdm); 1533f22bcbcSToby Isaac (*newdm)->setupcalled = dm->setupcalled; 1549566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 1559566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*newdm, sf)); 1569566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dm, &ctx)); 1579566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(*newdm, ctx)); 158ec196627SMatthew G. Knepley PetscCall(DMReorderSectionGetDefault(dm, &flg)); 159ec196627SMatthew G. Knepley PetscCall(DMReorderSectionSetDefault(*newdm, flg)); 160ec196627SMatthew G. Knepley PetscCall(DMReorderSectionGetType(dm, &otype)); 161ec196627SMatthew G. Knepley PetscCall(DMReorderSectionSetType(*newdm, otype)); 1626858538eSMatthew G. Knepley for (i = 0; i < 2; ++i) { 1636858538eSMatthew G. Knepley if (dm->coordinates[i].dm) { 164be4c1c3eSMatthew G. Knepley DM ncdm; 165be4c1c3eSMatthew G. Knepley PetscSection cs; 1665a0206caSToby Isaac PetscInt pEnd = -1, pEndMax = -1; 167be4c1c3eSMatthew G. Knepley 1686858538eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm->coordinates[i].dm, &cs)); 1699566063dSJacob Faibussowitsch if (cs) PetscCall(PetscSectionGetChart(cs, NULL, &pEnd)); 170462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&pEnd, &pEndMax, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 1715a0206caSToby Isaac if (pEndMax >= 0) { 1726858538eSMatthew G. Knepley PetscCall(DMClone(dm->coordinates[i].dm, &ncdm)); 1736858538eSMatthew G. Knepley PetscCall(DMCopyDisc(dm->coordinates[i].dm, ncdm)); 1749566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(ncdm, cs)); 1755e50ca95SJames Wright if (dm->coordinates[i].dm->periodic.setup) { 1765e50ca95SJames Wright ncdm->periodic.setup = dm->coordinates[i].dm->periodic.setup; 1775e50ca95SJames Wright PetscCall(ncdm->periodic.setup(ncdm)); 1785e50ca95SJames Wright } 1796858538eSMatthew G. Knepley if (i) PetscCall(DMSetCellCoordinateDM(*newdm, ncdm)); 1806858538eSMatthew G. Knepley else PetscCall(DMSetCoordinateDM(*newdm, ncdm)); 1819566063dSJacob Faibussowitsch PetscCall(DMDestroy(&ncdm)); 182be4c1c3eSMatthew G. Knepley } 183be4c1c3eSMatthew G. Knepley } 1846858538eSMatthew G. Knepley } 1859566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 1869566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*newdm, cdim)); 1879566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coords)); 18838221697SMatthew G. Knepley if (coords) { 1899566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(*newdm, coords)); 19038221697SMatthew G. Knepley } else { 1919566063dSJacob Faibussowitsch PetscCall(DMGetCoordinates(dm, &coords)); 1929566063dSJacob Faibussowitsch if (coords) PetscCall(DMSetCoordinates(*newdm, coords)); 19338221697SMatthew G. Knepley } 1946858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinatesLocal(dm, &coords)); 1956858538eSMatthew G. Knepley if (coords) { 1966858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinatesLocal(*newdm, coords)); 1976858538eSMatthew G. Knepley } else { 1986858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinates(dm, &coords)); 1996858538eSMatthew G. Knepley if (coords) PetscCall(DMSetCellCoordinates(*newdm, coords)); 2006858538eSMatthew G. Knepley } 20190b157c4SStefano Zampini { 2024fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 2036858538eSMatthew G. Knepley 2044fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 2054fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*newdm, maxCell, Lstart, L)); 206c6b900c6SMatthew G. Knepley } 20734aa8a36SMatthew G. Knepley { 20834aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 20934aa8a36SMatthew G. Knepley 2109566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, &useCone, &useClosure)); 2119566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(*newdm, PETSC_DEFAULT, useCone, useClosure)); 21234aa8a36SMatthew G. Knepley } 2133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21438221697SMatthew G. Knepley } 21538221697SMatthew G. Knepley 2165d83a8b1SBarry Smith /*@ 2175d83a8b1SBarry Smith DMSetVecType - Sets the type of vector to be created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 2189a42bb27SBarry Smith 21920f4b53cSBarry Smith Logically Collective 2209a42bb27SBarry Smith 221147403d9SBarry Smith Input Parameters: 22232546409SMatthew G. Knepley + dm - initial distributed array 223bb7acecfSBarry Smith - ctype - the vector type, for example `VECSTANDARD`, `VECCUDA`, or `VECVIENNACL` 2249a42bb27SBarry Smith 22520f4b53cSBarry Smith Options Database Key: 226147403d9SBarry Smith . -dm_vec_type ctype - the type of vector to create 2279a42bb27SBarry Smith 2289a42bb27SBarry Smith Level: intermediate 2299a42bb27SBarry Smith 23060225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMGetVecType()`, `DMSetMatType()`, `DMGetMatType()`, 231bb7acecfSBarry Smith `VECSTANDARD`, `VECCUDA`, `VECVIENNACL`, `DMCreateLocalVector()`, `DMCreateGlobalVector()` 2329a42bb27SBarry Smith @*/ 23332546409SMatthew G. Knepley PetscErrorCode DMSetVecType(DM dm, VecType ctype) 234d71ae5a4SJacob Faibussowitsch { 23532546409SMatthew G. Knepley char *tmp; 23632546409SMatthew G. Knepley 2379a42bb27SBarry Smith PetscFunctionBegin; 23832546409SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 23932546409SMatthew G. Knepley PetscAssertPointer(ctype, 2); 24032546409SMatthew G. Knepley tmp = (char *)dm->vectype; 24132546409SMatthew G. Knepley PetscCall(PetscStrallocpy(ctype, (char **)&dm->vectype)); 24232546409SMatthew G. Knepley PetscCall(PetscFree(tmp)); 2433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2449a42bb27SBarry Smith } 2459a42bb27SBarry Smith 2465d83a8b1SBarry Smith /*@ 247bb7acecfSBarry Smith DMGetVecType - Gets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 248c0dedaeaSBarry Smith 24920f4b53cSBarry Smith Logically Collective 250c0dedaeaSBarry Smith 251c0dedaeaSBarry Smith Input Parameter: 252c0dedaeaSBarry Smith . da - initial distributed array 253c0dedaeaSBarry Smith 254c0dedaeaSBarry Smith Output Parameter: 255c0dedaeaSBarry Smith . ctype - the vector type 256c0dedaeaSBarry Smith 257c0dedaeaSBarry Smith Level: intermediate 258c0dedaeaSBarry Smith 25960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMSetMatType()`, `DMGetMatType()`, `DMSetVecType()` 260c0dedaeaSBarry Smith @*/ 261d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetVecType(DM da, VecType *ctype) 262d71ae5a4SJacob Faibussowitsch { 263c0dedaeaSBarry Smith PetscFunctionBegin; 264c0dedaeaSBarry Smith PetscValidHeaderSpecific(da, DM_CLASSID, 1); 265c0dedaeaSBarry Smith *ctype = da->vectype; 2663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 267c0dedaeaSBarry Smith } 268c0dedaeaSBarry Smith 2695f1ad066SMatthew G Knepley /*@ 270bb7acecfSBarry Smith VecGetDM - Gets the `DM` defining the data layout of the vector 2715f1ad066SMatthew G Knepley 27220f4b53cSBarry Smith Not Collective 2735f1ad066SMatthew G Knepley 2745f1ad066SMatthew G Knepley Input Parameter: 275bb7acecfSBarry Smith . v - The `Vec` 2765f1ad066SMatthew G Knepley 2775f1ad066SMatthew G Knepley Output Parameter: 278bb7acecfSBarry Smith . dm - The `DM` 2795f1ad066SMatthew G Knepley 2805f1ad066SMatthew G Knepley Level: intermediate 2815f1ad066SMatthew G Knepley 282bb7acecfSBarry Smith Note: 283bb7acecfSBarry Smith A `Vec` may not have a `DM` associated with it. 284bb7acecfSBarry Smith 2851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecSetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 2865f1ad066SMatthew G Knepley @*/ 287d71ae5a4SJacob Faibussowitsch PetscErrorCode VecGetDM(Vec v, DM *dm) 288d71ae5a4SJacob Faibussowitsch { 2895f1ad066SMatthew G Knepley PetscFunctionBegin; 2905f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 2914f572ea9SToby Isaac PetscAssertPointer(dm, 2); 2929566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)v, "__PETSc_dm", (PetscObject *)dm)); 2933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2945f1ad066SMatthew G Knepley } 2955f1ad066SMatthew G Knepley 2965f1ad066SMatthew G Knepley /*@ 297bb7acecfSBarry Smith VecSetDM - Sets the `DM` defining the data layout of the vector. 2985f1ad066SMatthew G Knepley 29920f4b53cSBarry Smith Not Collective 3005f1ad066SMatthew G Knepley 3015f1ad066SMatthew G Knepley Input Parameters: 302bb7acecfSBarry Smith + v - The `Vec` 303bb7acecfSBarry Smith - dm - The `DM` 3045f1ad066SMatthew G Knepley 30520f4b53cSBarry Smith Level: developer 30620f4b53cSBarry Smith 30773ff1848SBarry Smith Notes: 308bb7acecfSBarry Smith This is rarely used, generally one uses `DMGetLocalVector()` or `DMGetGlobalVector()` to create a vector associated with a given `DM` 309d9805387SMatthew G. Knepley 310bb7acecfSBarry Smith This is NOT the same as `DMCreateGlobalVector()` since it does not change the view methods or perform other customization, but merely sets the `DM` member. 311bb7acecfSBarry Smith 3121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecGetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 3135f1ad066SMatthew G Knepley @*/ 314d71ae5a4SJacob Faibussowitsch PetscErrorCode VecSetDM(Vec v, DM dm) 315d71ae5a4SJacob Faibussowitsch { 3165f1ad066SMatthew G Knepley PetscFunctionBegin; 3175f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 318d7f50e27SLisandro Dalcin if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 3199566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)v, "__PETSc_dm", (PetscObject)dm)); 3203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3215f1ad066SMatthew G Knepley } 3225f1ad066SMatthew G Knepley 323cc4c1da9SBarry Smith /*@ 324bb7acecfSBarry Smith DMSetISColoringType - Sets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 3258f1509bcSBarry Smith 32620f4b53cSBarry Smith Logically Collective 3278f1509bcSBarry Smith 3288f1509bcSBarry Smith Input Parameters: 329bb7acecfSBarry Smith + dm - the `DM` context 3308f1509bcSBarry Smith - ctype - the matrix type 3318f1509bcSBarry Smith 33220f4b53cSBarry Smith Options Database Key: 3338f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3348f1509bcSBarry Smith 3358f1509bcSBarry Smith Level: intermediate 3368f1509bcSBarry Smith 3371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 338bb7acecfSBarry Smith `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3398f1509bcSBarry Smith @*/ 340d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetISColoringType(DM dm, ISColoringType ctype) 341d71ae5a4SJacob Faibussowitsch { 3428f1509bcSBarry Smith PetscFunctionBegin; 3438f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3448f1509bcSBarry Smith dm->coloringtype = ctype; 3453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3468f1509bcSBarry Smith } 3478f1509bcSBarry Smith 348cc4c1da9SBarry Smith /*@ 349bb7acecfSBarry Smith DMGetISColoringType - Gets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 350521d9a4cSLisandro Dalcin 35120f4b53cSBarry Smith Logically Collective 352521d9a4cSLisandro Dalcin 353521d9a4cSLisandro Dalcin Input Parameter: 354bb7acecfSBarry Smith . dm - the `DM` context 3558f1509bcSBarry Smith 3568f1509bcSBarry Smith Output Parameter: 3578f1509bcSBarry Smith . ctype - the matrix type 3588f1509bcSBarry Smith 35920f4b53cSBarry Smith Options Database Key: 3608f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3618f1509bcSBarry Smith 3628f1509bcSBarry Smith Level: intermediate 3638f1509bcSBarry Smith 3641cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 36542747ad1SJacob Faibussowitsch `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3668f1509bcSBarry Smith @*/ 367d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetISColoringType(DM dm, ISColoringType *ctype) 368d71ae5a4SJacob Faibussowitsch { 3698f1509bcSBarry Smith PetscFunctionBegin; 3708f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3718f1509bcSBarry Smith *ctype = dm->coloringtype; 3723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3738f1509bcSBarry Smith } 3748f1509bcSBarry Smith 375cc4c1da9SBarry Smith /*@ 376bb7acecfSBarry Smith DMSetMatType - Sets the type of matrix created with `DMCreateMatrix()` 3778f1509bcSBarry Smith 37820f4b53cSBarry Smith Logically Collective 3798f1509bcSBarry Smith 3808f1509bcSBarry Smith Input Parameters: 381bb7acecfSBarry Smith + dm - the `DM` context 382bb7acecfSBarry Smith - ctype - the matrix type, for example `MATMPIAIJ` 383521d9a4cSLisandro Dalcin 38420f4b53cSBarry Smith Options Database Key: 385bb7acecfSBarry Smith . -dm_mat_type ctype - the type of the matrix to create, for example mpiaij 386521d9a4cSLisandro Dalcin 387521d9a4cSLisandro Dalcin Level: intermediate 388521d9a4cSLisandro Dalcin 38942747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatType`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMGetMatType()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()` 390521d9a4cSLisandro Dalcin @*/ 391d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatType(DM dm, MatType ctype) 392d71ae5a4SJacob Faibussowitsch { 39332546409SMatthew G. Knepley char *tmp; 39432546409SMatthew G. Knepley 395521d9a4cSLisandro Dalcin PetscFunctionBegin; 396521d9a4cSLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39732546409SMatthew G. Knepley PetscAssertPointer(ctype, 2); 39832546409SMatthew G. Knepley tmp = (char *)dm->mattype; 3999566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(ctype, (char **)&dm->mattype)); 40032546409SMatthew G. Knepley PetscCall(PetscFree(tmp)); 4013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 402521d9a4cSLisandro Dalcin } 403521d9a4cSLisandro Dalcin 404cc4c1da9SBarry Smith /*@ 40520f4b53cSBarry Smith DMGetMatType - Gets the type of matrix that would be created with `DMCreateMatrix()` 406c0dedaeaSBarry Smith 40720f4b53cSBarry Smith Logically Collective 408c0dedaeaSBarry Smith 409c0dedaeaSBarry Smith Input Parameter: 410bb7acecfSBarry Smith . dm - the `DM` context 411c0dedaeaSBarry Smith 412c0dedaeaSBarry Smith Output Parameter: 413c0dedaeaSBarry Smith . ctype - the matrix type 414c0dedaeaSBarry Smith 415c0dedaeaSBarry Smith Level: intermediate 416c0dedaeaSBarry Smith 41742747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMSetMatType()` 418c0dedaeaSBarry Smith @*/ 419d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetMatType(DM dm, MatType *ctype) 420d71ae5a4SJacob Faibussowitsch { 421c0dedaeaSBarry Smith PetscFunctionBegin; 422c0dedaeaSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 423c0dedaeaSBarry Smith *ctype = dm->mattype; 4243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 425c0dedaeaSBarry Smith } 426c0dedaeaSBarry Smith 427c688c046SMatthew G Knepley /*@ 428bb7acecfSBarry Smith MatGetDM - Gets the `DM` defining the data layout of the matrix 429c688c046SMatthew G Knepley 43020f4b53cSBarry Smith Not Collective 431c688c046SMatthew G Knepley 432c688c046SMatthew G Knepley Input Parameter: 433bb7acecfSBarry Smith . A - The `Mat` 434c688c046SMatthew G Knepley 435c688c046SMatthew G Knepley Output Parameter: 436bb7acecfSBarry Smith . dm - The `DM` 437c688c046SMatthew G Knepley 438c688c046SMatthew G Knepley Level: intermediate 439c688c046SMatthew G Knepley 440bb7acecfSBarry Smith Note: 441bb7acecfSBarry Smith A matrix may not have a `DM` associated with it 442bb7acecfSBarry Smith 44373ff1848SBarry Smith Developer Note: 444bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with the `Mat` through a `PetscObjectCompose()` operation 4458f1509bcSBarry Smith 4461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatSetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 447c688c046SMatthew G Knepley @*/ 448d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDM(Mat A, DM *dm) 449d71ae5a4SJacob Faibussowitsch { 450c688c046SMatthew G Knepley PetscFunctionBegin; 451c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4524f572ea9SToby Isaac PetscAssertPointer(dm, 2); 4539566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_dm", (PetscObject *)dm)); 4543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 455c688c046SMatthew G Knepley } 456c688c046SMatthew G Knepley 457c688c046SMatthew G Knepley /*@ 458bb7acecfSBarry Smith MatSetDM - Sets the `DM` defining the data layout of the matrix 459c688c046SMatthew G Knepley 46020f4b53cSBarry Smith Not Collective 461c688c046SMatthew G Knepley 462c688c046SMatthew G Knepley Input Parameters: 46320f4b53cSBarry Smith + A - The `Mat` 46420f4b53cSBarry Smith - dm - The `DM` 465c688c046SMatthew G Knepley 466bb7acecfSBarry Smith Level: developer 467c688c046SMatthew G Knepley 468bb7acecfSBarry Smith Note: 469bb7acecfSBarry Smith This is rarely used in practice, rather `DMCreateMatrix()` is used to create a matrix associated with a particular `DM` 470bb7acecfSBarry Smith 47173ff1848SBarry Smith Developer Note: 472bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with 473bb7acecfSBarry Smith the `Mat` through a `PetscObjectCompose()` operation 4748f1509bcSBarry Smith 4751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatGetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 476c688c046SMatthew G Knepley @*/ 477d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetDM(Mat A, DM dm) 478d71ae5a4SJacob Faibussowitsch { 479c688c046SMatthew G Knepley PetscFunctionBegin; 480c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4818865f1eaSKarl Rupp if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 4829566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_dm", (PetscObject)dm)); 4833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 484c688c046SMatthew G Knepley } 485c688c046SMatthew G Knepley 486cc4c1da9SBarry Smith /*@ 487bb7acecfSBarry Smith DMSetOptionsPrefix - Sets the prefix prepended to all option names when searching through the options database 4889a42bb27SBarry Smith 48920f4b53cSBarry Smith Logically Collective 4909a42bb27SBarry Smith 491d8d19677SJose E. Roman Input Parameters: 49260225df5SJacob Faibussowitsch + dm - the `DM` context 493bb7acecfSBarry Smith - prefix - the prefix to prepend 4949a42bb27SBarry Smith 49520f4b53cSBarry Smith Level: advanced 49620f4b53cSBarry Smith 49720f4b53cSBarry Smith Note: 4989a42bb27SBarry Smith A hyphen (-) must NOT be given at the beginning of the prefix name. 4999a42bb27SBarry Smith The first character of all runtime options is AUTOMATICALLY the hyphen. 5009a42bb27SBarry Smith 5011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscObjectSetOptionsPrefix()`, `DMSetFromOptions()` 5029a42bb27SBarry Smith @*/ 503d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOptionsPrefix(DM dm, const char prefix[]) 504d71ae5a4SJacob Faibussowitsch { 5059a42bb27SBarry Smith PetscFunctionBegin; 5069a42bb27SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5079566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, prefix)); 5081baa6e33SBarry Smith if (dm->sf) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sf, prefix)); 5091baa6e33SBarry Smith if (dm->sectionSF) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sectionSF, prefix)); 5103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5119a42bb27SBarry Smith } 5129a42bb27SBarry Smith 513cc4c1da9SBarry Smith /*@ 514da81f932SPierre Jolivet DMAppendOptionsPrefix - Appends an additional string to an already existing prefix used for searching for 515bb7acecfSBarry Smith `DM` options in the options database. 51631697293SDave May 51720f4b53cSBarry Smith Logically Collective 51831697293SDave May 51931697293SDave May Input Parameters: 520bb7acecfSBarry Smith + dm - the `DM` context 521bb7acecfSBarry Smith - prefix - the string to append to the current prefix 52231697293SDave May 52320f4b53cSBarry Smith Level: advanced 52420f4b53cSBarry Smith 52520f4b53cSBarry Smith Note: 526bb7acecfSBarry Smith If the `DM` does not currently have an options prefix then this value is used alone as the prefix as if `DMSetOptionsPrefix()` had been called. 52731697293SDave May A hyphen (-) must NOT be given at the beginning of the prefix name. 52831697293SDave May The first character of all runtime options is AUTOMATICALLY the hyphen. 52931697293SDave May 5301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMGetOptionsPrefix()`, `PetscObjectAppendOptionsPrefix()`, `DMSetFromOptions()` 53131697293SDave May @*/ 532d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAppendOptionsPrefix(DM dm, const char prefix[]) 533d71ae5a4SJacob Faibussowitsch { 53431697293SDave May PetscFunctionBegin; 53531697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5369566063dSJacob Faibussowitsch PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, prefix)); 5373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 53831697293SDave May } 53931697293SDave May 540cc4c1da9SBarry Smith /*@ 54131697293SDave May DMGetOptionsPrefix - Gets the prefix used for searching for all 542bb7acecfSBarry Smith DM options in the options database. 54331697293SDave May 54431697293SDave May Not Collective 54531697293SDave May 5462fe279fdSBarry Smith Input Parameter: 547bb7acecfSBarry Smith . dm - the `DM` context 54831697293SDave May 5492fe279fdSBarry Smith Output Parameter: 55031697293SDave May . prefix - pointer to the prefix string used is returned 55131697293SDave May 55231697293SDave May Level: advanced 55331697293SDave May 55473ff1848SBarry Smith Fortran Note: 55520f4b53cSBarry Smith Pass in a string 'prefix' of 55620f4b53cSBarry Smith sufficient length to hold the prefix. 55720f4b53cSBarry Smith 5581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMAppendOptionsPrefix()`, `DMSetFromOptions()` 55931697293SDave May @*/ 560d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOptionsPrefix(DM dm, const char *prefix[]) 561d71ae5a4SJacob Faibussowitsch { 56231697293SDave May PetscFunctionBegin; 56331697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5649566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, prefix)); 5653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56631697293SDave May } 56731697293SDave May 56862e5d2d2SJDBetteridge static PetscErrorCode DMCountNonCyclicReferences_Internal(DM dm, PetscBool recurseCoarse, PetscBool recurseFine, PetscInt *ncrefct) 569d71ae5a4SJacob Faibussowitsch { 5706eb26441SStefano Zampini PetscInt refct = ((PetscObject)dm)->refct; 57188bdff64SToby Isaac 57288bdff64SToby Isaac PetscFunctionBegin; 573aab5bcd8SJed Brown *ncrefct = 0; 57488bdff64SToby Isaac if (dm->coarseMesh && dm->coarseMesh->fineMesh == dm) { 57588bdff64SToby Isaac refct--; 57688bdff64SToby Isaac if (recurseCoarse) { 57788bdff64SToby Isaac PetscInt coarseCount; 57888bdff64SToby Isaac 57962e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->coarseMesh, PETSC_TRUE, PETSC_FALSE, &coarseCount)); 58088bdff64SToby Isaac refct += coarseCount; 58188bdff64SToby Isaac } 58288bdff64SToby Isaac } 58388bdff64SToby Isaac if (dm->fineMesh && dm->fineMesh->coarseMesh == dm) { 58488bdff64SToby Isaac refct--; 58588bdff64SToby Isaac if (recurseFine) { 58688bdff64SToby Isaac PetscInt fineCount; 58788bdff64SToby Isaac 58862e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->fineMesh, PETSC_FALSE, PETSC_TRUE, &fineCount)); 58988bdff64SToby Isaac refct += fineCount; 59088bdff64SToby Isaac } 59188bdff64SToby Isaac } 59288bdff64SToby Isaac *ncrefct = refct; 5933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 59488bdff64SToby Isaac } 59588bdff64SToby Isaac 59662e5d2d2SJDBetteridge /* Generic wrapper for DMCountNonCyclicReferences_Internal() */ 59762e5d2d2SJDBetteridge PetscErrorCode DMCountNonCyclicReferences(PetscObject dm, PetscInt *ncrefct) 59862e5d2d2SJDBetteridge { 59962e5d2d2SJDBetteridge PetscFunctionBegin; 60062e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal((DM)dm, PETSC_TRUE, PETSC_TRUE, ncrefct)); 6013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 60262e5d2d2SJDBetteridge } 60362e5d2d2SJDBetteridge 604d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyLabelLinkList_Internal(DM dm) 605d71ae5a4SJacob Faibussowitsch { 6065d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 607354557abSToby Isaac 608354557abSToby Isaac PetscFunctionBegin; 609354557abSToby Isaac /* destroy the labels */ 610354557abSToby Isaac while (next) { 611354557abSToby Isaac DMLabelLink tmp = next->next; 612354557abSToby Isaac 6135d80c0bfSVaclav Hapla if (next->label == dm->depthLabel) dm->depthLabel = NULL; 614ba2698f1SMatthew G. Knepley if (next->label == dm->celltypeLabel) dm->celltypeLabel = NULL; 6159566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 6169566063dSJacob Faibussowitsch PetscCall(PetscFree(next)); 617354557abSToby Isaac next = tmp; 618354557abSToby Isaac } 6195d80c0bfSVaclav Hapla dm->labels = NULL; 6203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 621354557abSToby Isaac } 622354557abSToby Isaac 62366976f2fSJacob Faibussowitsch static PetscErrorCode DMDestroyCoordinates_Private(DMCoordinates *c) 624d71ae5a4SJacob Faibussowitsch { 6256858538eSMatthew G. Knepley PetscFunctionBegin; 6266858538eSMatthew G. Knepley c->dim = PETSC_DEFAULT; 6276858538eSMatthew G. Knepley PetscCall(DMDestroy(&c->dm)); 6286858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->x)); 6296858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->xl)); 6306858538eSMatthew G. Knepley PetscCall(DMFieldDestroy(&c->field)); 6313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6326858538eSMatthew G. Knepley } 6336858538eSMatthew G. Knepley 6340764c050SBarry Smith /*@ 635bb7acecfSBarry Smith DMDestroy - Destroys a `DM`. 63647c6ae99SBarry Smith 63720f4b53cSBarry Smith Collective 63847c6ae99SBarry Smith 63947c6ae99SBarry Smith Input Parameter: 640bb7acecfSBarry Smith . dm - the `DM` object to destroy 64147c6ae99SBarry Smith 64247c6ae99SBarry Smith Level: developer 64347c6ae99SBarry Smith 6441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMType`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 64547c6ae99SBarry Smith @*/ 646d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroy(DM *dm) 647d71ae5a4SJacob Faibussowitsch { 6486eb26441SStefano Zampini PetscInt cnt; 64947c6ae99SBarry Smith 65047c6ae99SBarry Smith PetscFunctionBegin; 6513ba16761SJacob Faibussowitsch if (!*dm) PetscFunctionReturn(PETSC_SUCCESS); 652f4f49eeaSPierre Jolivet PetscValidHeaderSpecific(*dm, DM_CLASSID, 1); 65387e657c6SBarry Smith 65488bdff64SToby Isaac /* count all non-cyclic references in the doubly-linked list of coarse<->fine meshes */ 65562e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(*dm, PETSC_TRUE, PETSC_TRUE, &cnt)); 656f4f49eeaSPierre Jolivet --((PetscObject)*dm)->refct; 6579371c9d4SSatish Balay if (--cnt > 0) { 6589371c9d4SSatish Balay *dm = NULL; 6593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6609371c9d4SSatish Balay } 661f4f49eeaSPierre Jolivet if (((PetscObject)*dm)->refct < 0) PetscFunctionReturn(PETSC_SUCCESS); 662f4f49eeaSPierre Jolivet ((PetscObject)*dm)->refct = 0; 6636eb26441SStefano Zampini 6649566063dSJacob Faibussowitsch PetscCall(DMClearGlobalVectors(*dm)); 6659566063dSJacob Faibussowitsch PetscCall(DMClearLocalVectors(*dm)); 666974ca4ecSStefano Zampini PetscCall(DMClearNamedGlobalVectors(*dm)); 667974ca4ecSStefano Zampini PetscCall(DMClearNamedLocalVectors(*dm)); 6682348bcf4SPeter Brune 669b17ce1afSJed Brown /* Destroy the list of hooks */ 670c833c3b5SJed Brown { 671c833c3b5SJed Brown DMCoarsenHookLink link, next; 672b17ce1afSJed Brown for (link = (*dm)->coarsenhook; link; link = next) { 673b17ce1afSJed Brown next = link->next; 6749566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 675b17ce1afSJed Brown } 6760298fd71SBarry Smith (*dm)->coarsenhook = NULL; 677c833c3b5SJed Brown } 678c833c3b5SJed Brown { 679c833c3b5SJed Brown DMRefineHookLink link, next; 680c833c3b5SJed Brown for (link = (*dm)->refinehook; link; link = next) { 681c833c3b5SJed Brown next = link->next; 6829566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 683c833c3b5SJed Brown } 6840298fd71SBarry Smith (*dm)->refinehook = NULL; 685c833c3b5SJed Brown } 686be081cd6SPeter Brune { 687be081cd6SPeter Brune DMSubDomainHookLink link, next; 688be081cd6SPeter Brune for (link = (*dm)->subdomainhook; link; link = next) { 689be081cd6SPeter Brune next = link->next; 6909566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 691be081cd6SPeter Brune } 6920298fd71SBarry Smith (*dm)->subdomainhook = NULL; 693be081cd6SPeter Brune } 694baf369e7SPeter Brune { 695baf369e7SPeter Brune DMGlobalToLocalHookLink link, next; 696baf369e7SPeter Brune for (link = (*dm)->gtolhook; link; link = next) { 697baf369e7SPeter Brune next = link->next; 6989566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 699baf369e7SPeter Brune } 7000298fd71SBarry Smith (*dm)->gtolhook = NULL; 701baf369e7SPeter Brune } 702d4d07f1eSToby Isaac { 703d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, next; 704d4d07f1eSToby Isaac for (link = (*dm)->ltoghook; link; link = next) { 705d4d07f1eSToby Isaac next = link->next; 7069566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 707d4d07f1eSToby Isaac } 708d4d07f1eSToby Isaac (*dm)->ltoghook = NULL; 709d4d07f1eSToby Isaac } 710aa1993deSMatthew G Knepley /* Destroy the work arrays */ 711aa1993deSMatthew G Knepley { 712aa1993deSMatthew G Knepley DMWorkLink link, next; 713835f2295SStefano Zampini PetscCheck(!(*dm)->workout, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Work array still checked out %p %p", (void *)(*dm)->workout, (*dm)->workout->mem); 714aa1993deSMatthew G Knepley for (link = (*dm)->workin; link; link = next) { 715aa1993deSMatthew G Knepley next = link->next; 7169566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 7179566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 718aa1993deSMatthew G Knepley } 7190298fd71SBarry Smith (*dm)->workin = NULL; 720aa1993deSMatthew G Knepley } 721c58f1c22SToby Isaac /* destroy the labels */ 7229566063dSJacob Faibussowitsch PetscCall(DMDestroyLabelLinkList_Internal(*dm)); 723f4cdcedcSVaclav Hapla /* destroy the fields */ 7249566063dSJacob Faibussowitsch PetscCall(DMClearFields(*dm)); 725f4cdcedcSVaclav Hapla /* destroy the boundaries */ 726e6f8dbb6SToby Isaac { 727e6f8dbb6SToby Isaac DMBoundary next = (*dm)->boundary; 728e6f8dbb6SToby Isaac while (next) { 729e6f8dbb6SToby Isaac DMBoundary b = next; 730e6f8dbb6SToby Isaac 731e6f8dbb6SToby Isaac next = b->next; 7329566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 733e6f8dbb6SToby Isaac } 734e6f8dbb6SToby Isaac } 735b17ce1afSJed Brown 7369566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmksp)); 7379566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmsnes)); 7389566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmts)); 73952536dc3SBarry Smith 74048a46eb9SPierre Jolivet if ((*dm)->ctx && (*dm)->ctxdestroy) PetscCall((*(*dm)->ctxdestroy)(&(*dm)->ctx)); 7419566063dSJacob Faibussowitsch PetscCall(MatFDColoringDestroy(&(*dm)->fd)); 7429566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&(*dm)->ltogmap)); 7439566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->vectype)); 7449566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->mattype)); 74588ed4aceSMatthew G Knepley 7469566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->localSection)); 7479566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->globalSection)); 748adc21957SMatthew G. Knepley PetscCall(PetscFree((*dm)->reorderSectionType)); 7499566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&(*dm)->map)); 7509566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->defaultConstraint.section)); 7519566063dSJacob Faibussowitsch PetscCall(MatDestroy(&(*dm)->defaultConstraint.mat)); 7529566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sf)); 7539566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sectionSF)); 75448a46eb9SPierre Jolivet if ((*dm)->sfNatural) PetscCall(PetscSFDestroy(&(*dm)->sfNatural)); 7559566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)(*dm)->sfMigration)); 756e4d5475eSStefano Zampini PetscCall(DMClearAuxiliaryVec(*dm)); 7579566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDestroy(&(*dm)->auxData)); 75848a46eb9SPierre Jolivet if ((*dm)->coarseMesh && (*dm)->coarseMesh->fineMesh == *dm) PetscCall(DMSetFineDM((*dm)->coarseMesh, NULL)); 7596eb26441SStefano Zampini 7609566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->coarseMesh)); 76148a46eb9SPierre Jolivet if ((*dm)->fineMesh && (*dm)->fineMesh->coarseMesh == *dm) PetscCall(DMSetCoarseDM((*dm)->fineMesh, NULL)); 7629566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->fineMesh)); 7634fb89dddSMatthew G. Knepley PetscCall(PetscFree((*dm)->Lstart)); 7649566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->L)); 7659566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->maxCell)); 7666858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[0])); 7676858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[1])); 7689566063dSJacob Faibussowitsch if ((*dm)->transformDestroy) PetscCall((*(*dm)->transformDestroy)(*dm, (*dm)->transformCtx)); 7699566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->transformDM)); 7709566063dSJacob Faibussowitsch PetscCall(VecDestroy(&(*dm)->transform)); 771ddedc8f6SJames Wright for (PetscInt i = 0; i < (*dm)->periodic.num_affines; i++) { 772ddedc8f6SJames Wright PetscCall(VecScatterDestroy(&(*dm)->periodic.affine_to_local[i])); 773ddedc8f6SJames Wright PetscCall(VecDestroy(&(*dm)->periodic.affine[i])); 774ddedc8f6SJames Wright } 775ddedc8f6SJames Wright if ((*dm)->periodic.num_affines > 0) PetscCall(PetscFree2((*dm)->periodic.affine_to_local, (*dm)->periodic.affine)); 7766636e97aSMatthew G Knepley 7779566063dSJacob Faibussowitsch PetscCall(DMClearDS(*dm)); 7789566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->dmBC)); 779e04113cfSBarry Smith /* if memory was published with SAWs then destroy it */ 7809566063dSJacob Faibussowitsch PetscCall(PetscObjectSAWsViewOff((PetscObject)*dm)); 781732e2eb9SMatthew G Knepley 782213acdd3SPierre Jolivet PetscTryTypeMethod(*dm, destroy); 7839566063dSJacob Faibussowitsch PetscCall(DMMonitorCancel(*dm)); 784d2b2dc1eSMatthew G. Knepley PetscCall(DMCeedDestroy(&(*dm)->dmceed)); 785f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 7869566063dSJacob Faibussowitsch PetscCallCEED(CeedElemRestrictionDestroy(&(*dm)->ceedERestrict)); 7879566063dSJacob Faibussowitsch PetscCallCEED(CeedDestroy(&(*dm)->ceed)); 788f918ec44SMatthew G. Knepley #endif 789435a35e8SMatthew G Knepley /* We do not destroy (*dm)->data here so that we can reference count backend objects */ 7909566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(dm)); 7913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 79247c6ae99SBarry Smith } 79347c6ae99SBarry Smith 794d7bf68aeSBarry Smith /*@ 795bb7acecfSBarry Smith DMSetUp - sets up the data structures inside a `DM` object 796d7bf68aeSBarry Smith 79720f4b53cSBarry Smith Collective 798d7bf68aeSBarry Smith 799d7bf68aeSBarry Smith Input Parameter: 800bb7acecfSBarry Smith . dm - the `DM` object to setup 801d7bf68aeSBarry Smith 802bb7acecfSBarry Smith Level: intermediate 803d7bf68aeSBarry Smith 804bb7acecfSBarry Smith Note: 805bb7acecfSBarry Smith This is usually called after various parameter setting operations and `DMSetFromOptions()` are called on the `DM` 806bb7acecfSBarry Smith 8071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 808d7bf68aeSBarry Smith @*/ 809d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUp(DM dm) 810d71ae5a4SJacob Faibussowitsch { 811d7bf68aeSBarry Smith PetscFunctionBegin; 812171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8133ba16761SJacob Faibussowitsch if (dm->setupcalled) PetscFunctionReturn(PETSC_SUCCESS); 814dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setup); 8158387afaaSJed Brown dm->setupcalled = PETSC_TRUE; 8163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 817d7bf68aeSBarry Smith } 818d7bf68aeSBarry Smith 819d7bf68aeSBarry Smith /*@ 820bb7acecfSBarry Smith DMSetFromOptions - sets parameters in a `DM` from the options database 821d7bf68aeSBarry Smith 82220f4b53cSBarry Smith Collective 823d7bf68aeSBarry Smith 824d7bf68aeSBarry Smith Input Parameter: 825bb7acecfSBarry Smith . dm - the `DM` object to set options for 826d7bf68aeSBarry Smith 82720f4b53cSBarry Smith Options Database Keys: 828bb7acecfSBarry Smith + -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 829bb7acecfSBarry Smith . -dm_vec_type <type> - type of vector to create inside `DM` 830bb7acecfSBarry Smith . -dm_mat_type <type> - type of matrix to create inside `DM` 831a4ea9b21SRichard Tran Mills . -dm_is_coloring_type - <global or local> 83220f4b53cSBarry Smith . -dm_bind_below <n> - bind (force execution on CPU) for `Vec` and `Mat` objects with local size (number of vector entries or matrix rows) below n; currently only supported for `DMDA` 83322d6dc08SStefano Zampini . -dm_plex_option_phases <ph0_, ph1_, ...> - List of prefixes for option processing phases 83420f4b53cSBarry Smith . -dm_plex_filename <str> - File containing a mesh 8359318fe57SMatthew G. Knepley . -dm_plex_boundary_filename <str> - File containing a mesh boundary 836cd7e8a5eSksagiyam . -dm_plex_name <str> - Name of the mesh in the file 8375dca41c3SJed Brown . -dm_plex_shape <shape> - The domain shape, such as `BOX`, `SPHERE`, etc. 8389318fe57SMatthew G. Knepley . -dm_plex_cell <ct> - Cell shape 8399318fe57SMatthew G. Knepley . -dm_plex_reference_cell_domain <bool> - Use a reference cell domain 8409318fe57SMatthew G. Knepley . -dm_plex_dim <dim> - Set the topological dimension 841bb7acecfSBarry Smith . -dm_plex_simplex <bool> - `PETSC_TRUE` for simplex elements, `PETSC_FALSE` for tensor elements 842bb7acecfSBarry Smith . -dm_plex_interpolate <bool> - `PETSC_TRUE` turns on topological interpolation (creating edges and faces) 843*b9da1bb3SMatthew G. Knepley . -dm_plex_orient <bool> - `PETSC_TRUE` turns on topological orientation (flipping edges and faces) 8449318fe57SMatthew G. Knepley . -dm_plex_scale <sc> - Scale factor for mesh coordinates 845be664eb1SMatthew G. Knepley . -dm_coord_remap <bool> - Map coordinates using a function 846be664eb1SMatthew G. Knepley . -dm_coord_map <mapname> - Select a builtin coordinate map 847be664eb1SMatthew G. Knepley . -dm_coord_map_params <p0,p1,p2,...> - Set coordinate mapping parameters 8489318fe57SMatthew G. Knepley . -dm_plex_box_faces <m,n,p> - Number of faces along each dimension 8499318fe57SMatthew G. Knepley . -dm_plex_box_lower <x,y,z> - Specify lower-left-bottom coordinates for the box 8509318fe57SMatthew G. Knepley . -dm_plex_box_upper <x,y,z> - Specify upper-right-top coordinates for the box 851bb7acecfSBarry Smith . -dm_plex_box_bd <bx,by,bz> - Specify the `DMBoundaryType` for each direction 8529318fe57SMatthew G. Knepley . -dm_plex_sphere_radius <r> - The sphere radius 8539318fe57SMatthew G. Knepley . -dm_plex_ball_radius <r> - Radius of the ball 8549318fe57SMatthew G. Knepley . -dm_plex_cylinder_bd <bz> - Boundary type in the z direction 8559318fe57SMatthew G. Knepley . -dm_plex_cylinder_num_wedges <n> - Number of wedges around the cylinder 856bdf63967SMatthew G. Knepley . -dm_plex_reorder <order> - Reorder the mesh using the specified algorithm 8579318fe57SMatthew G. Knepley . -dm_refine_pre <n> - The number of refinements before distribution 8589318fe57SMatthew G. Knepley . -dm_refine_uniform_pre <bool> - Flag for uniform refinement before distribution 8599318fe57SMatthew G. Knepley . -dm_refine_volume_limit_pre <v> - The maximum cell volume after refinement before distribution 8609318fe57SMatthew G. Knepley . -dm_refine <n> - The number of refinements after distribution 861bdf63967SMatthew G. Knepley . -dm_extrude <l> - Activate extrusion and specify the number of layers to extrude 862d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thickness <t> - The total thickness of extruded layers 863d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_use_tensor <bool> - Use tensor cells when extruding 864d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_symmetric <bool> - Extrude layers symmetrically about the surface 865d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_normal <n0,...,nd> - Specify the extrusion direction 866d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thicknesses <t0,...,tl> - Specify thickness of each layer 867909dfd52SMatthew G. Knepley . -dm_plex_create_fv_ghost_cells - Flag to create finite volume ghost cells on the boundary 868909dfd52SMatthew G. Knepley . -dm_plex_fv_ghost_cells_label <name> - Label name for ghost cells boundary 8699318fe57SMatthew G. Knepley . -dm_distribute <bool> - Flag to redistribute a mesh among processes 8709318fe57SMatthew G. Knepley . -dm_distribute_overlap <n> - The size of the overlap halo 8719318fe57SMatthew G. Knepley . -dm_plex_adj_cone <bool> - Set adjacency direction 87220f4b53cSBarry Smith . -dm_plex_adj_closure <bool> - Set adjacency size 873d2b2dc1eSMatthew G. Knepley . -dm_plex_use_ceed <bool> - Use LibCEED as the FEM backend 87420f4b53cSBarry Smith . -dm_plex_check_symmetry - Check that the adjacency information in the mesh is symmetric - `DMPlexCheckSymmetry()` 875bb7acecfSBarry Smith . -dm_plex_check_skeleton - Check that each cell has the correct number of vertices (only for homogeneous simplex or tensor meshes) - `DMPlexCheckSkeleton()` 876bb7acecfSBarry Smith . -dm_plex_check_faces - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type - `DMPlexCheckFaces()` 877bb7acecfSBarry Smith . -dm_plex_check_geometry - Check that cells have positive volume - `DMPlexCheckGeometry()` 878bb7acecfSBarry Smith . -dm_plex_check_pointsf - Check some necessary conditions for `PointSF` - `DMPlexCheckPointSF()` 879bb7acecfSBarry Smith . -dm_plex_check_interface_cones - Check points on inter-partition interfaces have conforming order of cone points - `DMPlexCheckInterfaceCones()` 880384a6580SVaclav Hapla - -dm_plex_check_all - Perform all the checks above 881d7bf68aeSBarry Smith 88295eb5ee5SVaclav Hapla Level: intermediate 88395eb5ee5SVaclav Hapla 8848e704042SBarry Smith Note: 8858e704042SBarry Smith For some `DMType` such as `DMDA` this cannot be called after `DMSetUp()` has been called. 8868e704042SBarry Smith 8871cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 888bb7acecfSBarry Smith `DMPlexCheckSymmetry()`, `DMPlexCheckSkeleton()`, `DMPlexCheckFaces()`, `DMPlexCheckGeometry()`, `DMPlexCheckPointSF()`, `DMPlexCheckInterfaceCones()`, 8898e704042SBarry Smith `DMSetOptionsPrefix()`, `DMType`, `DMPLEX`, `DMDA`, `DMSetUp()` 890d7bf68aeSBarry Smith @*/ 891d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFromOptions(DM dm) 892d71ae5a4SJacob Faibussowitsch { 8937781c08eSBarry Smith char typeName[256]; 894ca266f36SBarry Smith PetscBool flg; 895d7bf68aeSBarry Smith 896d7bf68aeSBarry Smith PetscFunctionBegin; 897171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 89849be4549SMatthew G. Knepley dm->setfromoptionscalled = PETSC_TRUE; 8999566063dSJacob Faibussowitsch if (dm->sf) PetscCall(PetscSFSetFromOptions(dm->sf)); 9009566063dSJacob Faibussowitsch if (dm->sectionSF) PetscCall(PetscSFSetFromOptions(dm->sectionSF)); 901dd4c3f67SMatthew G. Knepley if (dm->coordinates[0].dm) PetscCall(DMSetFromOptions(dm->coordinates[0].dm)); 902d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)dm); 9039566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_preallocate_only", "only preallocate matrix, but do not set column indices", "DMSetMatrixPreallocateOnly", dm->prealloc_only, &dm->prealloc_only, NULL)); 9049566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_vec_type", "Vector type used for created vectors", "DMSetVecType", VecList, dm->vectype, typeName, 256, &flg)); 9051baa6e33SBarry Smith if (flg) PetscCall(DMSetVecType(dm, typeName)); 9069566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_mat_type", "Matrix type used for created matrices", "DMSetMatType", MatList, dm->mattype ? dm->mattype : typeName, typeName, sizeof(typeName), &flg)); 9071baa6e33SBarry Smith if (flg) PetscCall(DMSetMatType(dm, typeName)); 908863027abSJed Brown PetscCall(PetscOptionsEnum("-dm_blocking_type", "Topological point or field node blocking", "DMSetBlockingType", DMBlockingTypes, (PetscEnum)dm->blocking_type, (PetscEnum *)&dm->blocking_type, NULL)); 9099566063dSJacob Faibussowitsch PetscCall(PetscOptionsEnum("-dm_is_coloring_type", "Global or local coloring of Jacobian", "DMSetISColoringType", ISColoringTypes, (PetscEnum)dm->coloringtype, (PetscEnum *)&dm->coloringtype, NULL)); 9109566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-dm_bind_below", "Set the size threshold (in entries) below which the Vec is bound to the CPU", "VecBindToCPU", dm->bind_below, &dm->bind_below, &flg)); 911eb9d3e4dSMatthew G. Knepley PetscCall(PetscOptionsBool("-dm_ignore_perm_output", "Ignore the local section permutation on output", "DMGetOutputDM", dm->ignorePermOutput, &dm->ignorePermOutput, NULL)); 912dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setfromoptions, PetscOptionsObject); 913f9ba7244SBarry Smith /* process any options handlers added with PetscObjectAddOptionsHandler() */ 914dbbe0bcdSBarry Smith PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)dm, PetscOptionsObject)); 915d0609cedSBarry Smith PetscOptionsEnd(); 9163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 917d7bf68aeSBarry Smith } 918d7bf68aeSBarry Smith 919ffeef943SBarry Smith /*@ 920bb7acecfSBarry Smith DMViewFromOptions - View a `DM` in a particular way based on a request in the options database 921fe2efc57SMark 92220f4b53cSBarry Smith Collective 923fe2efc57SMark 924fe2efc57SMark Input Parameters: 925bb7acecfSBarry Smith + dm - the `DM` object 92620f4b53cSBarry Smith . obj - optional object that provides the prefix for the options database (if `NULL` then the prefix in obj is used) 92760225df5SJacob Faibussowitsch - name - option string that is used to activate viewing 928fe2efc57SMark 929fe2efc57SMark Level: intermediate 930bb7acecfSBarry Smith 931bb7acecfSBarry Smith Note: 932bb7acecfSBarry Smith See `PetscObjectViewFromOptions()` for a list of values that can be provided in the options database to determine how the `DM` is viewed 933bb7acecfSBarry Smith 93460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `PetscObjectViewFromOptions()`, `DMCreate()` 935fe2efc57SMark @*/ 936d71ae5a4SJacob Faibussowitsch PetscErrorCode DMViewFromOptions(DM dm, PetscObject obj, const char name[]) 937d71ae5a4SJacob Faibussowitsch { 938fe2efc57SMark PetscFunctionBegin; 939fe2efc57SMark PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9409566063dSJacob Faibussowitsch PetscCall(PetscObjectViewFromOptions((PetscObject)dm, obj, name)); 9413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 942fe2efc57SMark } 943fe2efc57SMark 944ffeef943SBarry Smith /*@ 945bb7acecfSBarry Smith DMView - Views a `DM`. Depending on the `PetscViewer` and its `PetscViewerFormat` it may print some ASCII information about the `DM` to the screen or a file or 946bb7acecfSBarry Smith save the `DM` in a binary file to be loaded later or create a visualization of the `DM` 94747c6ae99SBarry Smith 94820f4b53cSBarry Smith Collective 94947c6ae99SBarry Smith 950d8d19677SJose E. Roman Input Parameters: 951bb7acecfSBarry Smith + dm - the `DM` object to view 95247c6ae99SBarry Smith - v - the viewer 95347c6ae99SBarry Smith 95420f4b53cSBarry Smith Level: beginner 95520f4b53cSBarry Smith 95649c89c76SBlaise Bourdin Notes: 95749c89c76SBlaise Bourdin 95849c89c76SBlaise Bourdin `PetscViewer` = `PETSCVIEWERHDF5` i.e. HDF5 format can be used with `PETSC_VIEWER_HDF5_PETSC` as the `PetscViewerFormat` to save multiple `DMPLEX` 959bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 960bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 961cd7e8a5eSksagiyam 96249c89c76SBlaise Bourdin `PetscViewer` = `PETSCVIEWEREXODUSII` i.e. ExodusII format assumes that element blocks (mapped to "Cell sets" labels) 96349c89c76SBlaise Bourdin consists of sequentially numbered cells. 96449c89c76SBlaise Bourdin 96549c89c76SBlaise Bourdin If `dm` has been distributed, only the part of the `DM` on MPI rank 0 (including "ghost" cells and vertices) will be written. 96649c89c76SBlaise Bourdin 96749c89c76SBlaise Bourdin Only TRI, TET, QUAD, and HEX cells are supported. 96849c89c76SBlaise Bourdin 96949c89c76SBlaise Bourdin `DMPLEX` only represents geometry while most post-processing software expect that a mesh also provides information on the discretization space. This function assumes that the file represents Lagrange finite elements of order 1 or 2. 97049c89c76SBlaise Bourdin The order of the mesh shall be set using `PetscViewerExodusIISetOrder()` 97149c89c76SBlaise Bourdin 972d7c1f440SPierre Jolivet Variable names can be set and queried using `PetscViewerExodusII[Set/Get][Nodal/Zonal]VariableNames[s]`. 97349c89c76SBlaise Bourdin 9741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewer`, `PetscViewerFormat`, `PetscViewerSetFormat()`, `DMDestroy()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMLoad()`, `PetscObjectSetName()` 97547c6ae99SBarry Smith @*/ 976d71ae5a4SJacob Faibussowitsch PetscErrorCode DMView(DM dm, PetscViewer v) 977d71ae5a4SJacob Faibussowitsch { 97832c0f0efSBarry Smith PetscBool isbinary; 97976a8abe0SBarry Smith PetscMPIInt size; 98076a8abe0SBarry Smith PetscViewerFormat format; 98147c6ae99SBarry Smith 98247c6ae99SBarry Smith PetscFunctionBegin; 983171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 98448a46eb9SPierre Jolivet if (!v) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &v)); 985b1b135c8SBarry Smith PetscValidHeaderSpecific(v, PETSC_VIEWER_CLASSID, 2); 98674903a4fSStefano Zampini /* Ideally, we would like to have this test on. 98774903a4fSStefano Zampini However, it currently breaks socket viz via GLVis. 98874903a4fSStefano Zampini During DMView(parallel_mesh,glvis_viewer), each 98974903a4fSStefano Zampini process opens a sequential ASCII socket to visualize 99074903a4fSStefano Zampini the local mesh, and PetscObjectView(dm,local_socket) 99174903a4fSStefano Zampini is internally called inside VecView_GLVis, incurring 99274903a4fSStefano Zampini in an error here */ 99374903a4fSStefano Zampini /* PetscCheckSameComm(dm,1,v,2); */ 9949566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckWritable(v)); 995b1b135c8SBarry Smith 9969566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(v, &format)); 9979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 9983ba16761SJacob Faibussowitsch if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(PETSC_SUCCESS); 9999566063dSJacob Faibussowitsch PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)dm, v)); 10009566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)v, PETSCVIEWERBINARY, &isbinary)); 100132c0f0efSBarry Smith if (isbinary) { 100255849f57SBarry Smith PetscInt classid = DM_FILE_CLASSID; 100332c0f0efSBarry Smith char type[256]; 100432c0f0efSBarry Smith 10059566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, &classid, 1, PETSC_INT)); 1006c6a7a370SJeremy L Thompson PetscCall(PetscStrncpy(type, ((PetscObject)dm)->type_name, sizeof(type))); 10079566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, type, 256, PETSC_CHAR)); 100832c0f0efSBarry Smith } 1009dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, view, v); 10103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 101147c6ae99SBarry Smith } 101247c6ae99SBarry Smith 101347c6ae99SBarry Smith /*@ 1014bb7acecfSBarry Smith DMCreateGlobalVector - Creates a global vector from a `DM` object. A global vector is a parallel vector that has no duplicate values shared between MPI ranks, 1015bb7acecfSBarry Smith that is it has no ghost locations. 101647c6ae99SBarry Smith 101720f4b53cSBarry Smith Collective 101847c6ae99SBarry Smith 101947c6ae99SBarry Smith Input Parameter: 1020bb7acecfSBarry Smith . dm - the `DM` object 102147c6ae99SBarry Smith 102247c6ae99SBarry Smith Output Parameter: 102347c6ae99SBarry Smith . vec - the global vector 102447c6ae99SBarry Smith 1025073dac72SJed Brown Level: beginner 102647c6ae99SBarry Smith 10271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1028bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 102947c6ae99SBarry Smith @*/ 1030d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateGlobalVector(DM dm, Vec *vec) 1031d71ae5a4SJacob Faibussowitsch { 103247c6ae99SBarry Smith PetscFunctionBegin; 1033171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10344f572ea9SToby Isaac PetscAssertPointer(vec, 2); 1035dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createglobalvector, vec); 103676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1037c6b011d8SStefano Zampini DM vdm; 1038c6b011d8SStefano Zampini 10399566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10407a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1041c6b011d8SStefano Zampini } 10423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 104347c6ae99SBarry Smith } 104447c6ae99SBarry Smith 104547c6ae99SBarry Smith /*@ 1046bb7acecfSBarry Smith DMCreateLocalVector - Creates a local vector from a `DM` object. 104747c6ae99SBarry Smith 104847c6ae99SBarry Smith Not Collective 104947c6ae99SBarry Smith 105047c6ae99SBarry Smith Input Parameter: 1051bb7acecfSBarry Smith . dm - the `DM` object 105247c6ae99SBarry Smith 105347c6ae99SBarry Smith Output Parameter: 105447c6ae99SBarry Smith . vec - the local vector 105547c6ae99SBarry Smith 1056073dac72SJed Brown Level: beginner 105747c6ae99SBarry Smith 105820f4b53cSBarry Smith Note: 1059bb7acecfSBarry Smith A local vector usually has ghost locations that contain values that are owned by different MPI ranks. A global vector has no ghost locations. 1060bb7acecfSBarry Smith 10611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 1062bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 106347c6ae99SBarry Smith @*/ 1064d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLocalVector(DM dm, Vec *vec) 1065d71ae5a4SJacob Faibussowitsch { 106647c6ae99SBarry Smith PetscFunctionBegin; 1067171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10684f572ea9SToby Isaac PetscAssertPointer(vec, 2); 1069dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalvector, vec); 107076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1071c6b011d8SStefano Zampini DM vdm; 1072c6b011d8SStefano Zampini 10739566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10747a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_LIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1075c6b011d8SStefano Zampini } 10763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 107747c6ae99SBarry Smith } 107847c6ae99SBarry Smith 10791411c6eeSJed Brown /*@ 1080bb7acecfSBarry Smith DMGetLocalToGlobalMapping - Accesses the local-to-global mapping in a `DM`. 10811411c6eeSJed Brown 108220f4b53cSBarry Smith Collective 10831411c6eeSJed Brown 10841411c6eeSJed Brown Input Parameter: 1085bb7acecfSBarry Smith . dm - the `DM` that provides the mapping 10861411c6eeSJed Brown 10871411c6eeSJed Brown Output Parameter: 10881411c6eeSJed Brown . ltog - the mapping 10891411c6eeSJed Brown 1090bb7acecfSBarry Smith Level: advanced 10911411c6eeSJed Brown 10921411c6eeSJed Brown Notes: 1093bb7acecfSBarry Smith The global to local mapping allows one to set values into the global vector or matrix using `VecSetValuesLocal()` and `MatSetValuesLocal()` 10941411c6eeSJed Brown 1095bb7acecfSBarry Smith Vectors obtained with `DMCreateGlobalVector()` and matrices obtained with `DMCreateMatrix()` already contain the global mapping so you do 1096bb7acecfSBarry Smith need to use this function with those objects. 1097bb7acecfSBarry Smith 1098bb7acecfSBarry Smith This mapping can then be used by `VecSetLocalToGlobalMapping()` or `MatSetLocalToGlobalMapping()`. 1099bb7acecfSBarry Smith 110060225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `VecSetLocalToGlobalMapping()`, `MatSetLocalToGlobalMapping()`, 1101bb7acecfSBarry Smith `DMCreateMatrix()` 11021411c6eeSJed Brown @*/ 1103d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalToGlobalMapping(DM dm, ISLocalToGlobalMapping *ltog) 1104d71ae5a4SJacob Faibussowitsch { 11050be3e97aSMatthew G. Knepley PetscInt bs = -1, bsLocal[2], bsMinMax[2]; 11061411c6eeSJed Brown 11071411c6eeSJed Brown PetscFunctionBegin; 11081411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11094f572ea9SToby Isaac PetscAssertPointer(ltog, 2); 11101411c6eeSJed Brown if (!dm->ltogmap) { 111137d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 111237d0c07bSMatthew G Knepley 11139566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 111437d0c07bSMatthew G Knepley if (section) { 1115a974ec88SMatthew G. Knepley const PetscInt *cdofs; 111637d0c07bSMatthew G Knepley PetscInt *ltog; 1117ccf3bd66SMatthew G. Knepley PetscInt pStart, pEnd, n, p, k, l; 111837d0c07bSMatthew G Knepley 11199566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 11209566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 11219566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(section, &n)); 11229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, <og)); /* We want the local+overlap size */ 112337d0c07bSMatthew G Knepley for (p = pStart, l = 0; p < pEnd; ++p) { 1124e6befd46SJed Brown PetscInt bdof, cdof, dof, off, c, cind; 112537d0c07bSMatthew G Knepley 112637d0c07bSMatthew G Knepley /* Should probably use constrained dofs */ 11279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, p, &dof)); 11289566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(section, p, &cdof)); 11299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(section, p, &cdofs)); 11309566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &off)); 11311a7dc684SMatthew G. Knepley /* If you have dofs, and constraints, and they are unequal, we set the blocksize to 1 */ 11321a7dc684SMatthew G. Knepley bdof = cdof && (dof - cdof) ? 1 : dof; 1133ad540459SPierre Jolivet if (dof) bs = bs < 0 ? bdof : PetscGCD(bs, bdof); 11345227eafbSStefano Zampini 1135e6befd46SJed Brown for (c = 0, cind = 0; c < dof; ++c, ++l) { 11365227eafbSStefano Zampini if (cind < cdof && c == cdofs[cind]) { 1137e6befd46SJed Brown ltog[l] = off < 0 ? off - c : -(off + c + 1); 1138e6befd46SJed Brown cind++; 1139e6befd46SJed Brown } else { 11405227eafbSStefano Zampini ltog[l] = (off < 0 ? -(off + 1) : off) + c - cind; 1141e6befd46SJed Brown } 114237d0c07bSMatthew G Knepley } 114337d0c07bSMatthew G Knepley } 1144bff27382SMatthew G. Knepley /* Must have same blocksize on all procs (some might have no points) */ 11451690c2aeSBarry Smith bsLocal[0] = bs < 0 ? PETSC_INT_MAX : bs; 11469371c9d4SSatish Balay bsLocal[1] = bs; 11479566063dSJacob Faibussowitsch PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)dm), bsLocal, bsMinMax)); 11489371c9d4SSatish Balay if (bsMinMax[0] != bsMinMax[1]) { 11499371c9d4SSatish Balay bs = 1; 11509371c9d4SSatish Balay } else { 11519371c9d4SSatish Balay bs = bsMinMax[0]; 11529371c9d4SSatish Balay } 11537591dbb2SMatthew G. Knepley bs = bs < 0 ? 1 : bs; 11547591dbb2SMatthew G. Knepley /* Must reduce indices by blocksize */ 1155ccf3bd66SMatthew G. Knepley if (bs > 1) { 1156ca469d19SJed Brown for (l = 0, k = 0; l < n; l += bs, ++k) { 1157ca469d19SJed Brown // Integer division of negative values truncates toward zero(!), not toward negative infinity 1158ca469d19SJed Brown ltog[k] = ltog[l] >= 0 ? ltog[l] / bs : -(-(ltog[l] + 1) / bs + 1); 1159ca469d19SJed Brown } 1160ccf3bd66SMatthew G. Knepley n /= bs; 1161ccf3bd66SMatthew G. Knepley } 11629566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm), bs, n, ltog, PETSC_OWN_POINTER, &dm->ltogmap)); 1163dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, getlocaltoglobalmapping); 116437d0c07bSMatthew G Knepley } 11651411c6eeSJed Brown *ltog = dm->ltogmap; 11663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11671411c6eeSJed Brown } 11681411c6eeSJed Brown 11691411c6eeSJed Brown /*@ 1170bb7acecfSBarry Smith DMGetBlockSize - Gets the inherent block size associated with a `DM` 11711411c6eeSJed Brown 11721411c6eeSJed Brown Not Collective 11731411c6eeSJed Brown 11741411c6eeSJed Brown Input Parameter: 1175bb7acecfSBarry Smith . dm - the `DM` with block structure 11761411c6eeSJed Brown 11771411c6eeSJed Brown Output Parameter: 11781411c6eeSJed Brown . bs - the block size, 1 implies no exploitable block structure 11791411c6eeSJed Brown 11801411c6eeSJed Brown Level: intermediate 11811411c6eeSJed Brown 118273ff1848SBarry Smith Notes: 1183bb7acecfSBarry Smith This might be the number of degrees of freedom at each grid point for a structured grid. 1184bb7acecfSBarry Smith 1185bb7acecfSBarry Smith Complex `DM` that represent multiphysics or staggered grids or mixed-methods do not generally have a single inherent block size, but 1186bb7acecfSBarry Smith rather different locations in the vectors may have a different block size. 1187bb7acecfSBarry Smith 11881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISCreateBlock()`, `VecSetBlockSize()`, `MatSetBlockSize()`, `DMGetLocalToGlobalMapping()` 11891411c6eeSJed Brown @*/ 1190d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBlockSize(DM dm, PetscInt *bs) 1191d71ae5a4SJacob Faibussowitsch { 11921411c6eeSJed Brown PetscFunctionBegin; 11931411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11944f572ea9SToby Isaac PetscAssertPointer(bs, 2); 11957a8be351SBarry Smith PetscCheck(dm->bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM does not have enough information to provide a block size yet"); 11961411c6eeSJed Brown *bs = dm->bs; 11973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11981411c6eeSJed Brown } 11991411c6eeSJed Brown 1200ffeef943SBarry Smith /*@ 1201bb7acecfSBarry Smith DMCreateInterpolation - Gets the interpolation matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1202bb7acecfSBarry Smith `DMCreateGlobalVector()` on the coarse `DM` to similar vectors on the fine grid `DM`. 120347c6ae99SBarry Smith 120420f4b53cSBarry Smith Collective 120547c6ae99SBarry Smith 1206d8d19677SJose E. Roman Input Parameters: 1207bb7acecfSBarry Smith + dmc - the `DM` object 1208bb7acecfSBarry Smith - dmf - the second, finer `DM` object 120947c6ae99SBarry Smith 1210d8d19677SJose E. Roman Output Parameters: 121147c6ae99SBarry Smith + mat - the interpolation 1212b6971eaeSBarry Smith - vec - the scaling (optional, pass `NULL` if not needed), see `DMCreateInterpolationScale()` 121347c6ae99SBarry Smith 121447c6ae99SBarry Smith Level: developer 121547c6ae99SBarry Smith 121695452b02SPatrick Sanan Notes: 1217bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1218bb7acecfSBarry Smith DMCoarsen(). The coordinates set into the `DMDA` are completely ignored in computing the interpolation. 1219d52bd9f3SBarry Smith 1220bb7acecfSBarry Smith For `DMDA` objects you can use this interpolation (more precisely the interpolation from the `DMGetCoordinateDM()`) to interpolate the mesh coordinate 1221bb7acecfSBarry Smith vectors EXCEPT in the periodic case where it does not make sense since the coordinate vectors are not periodic. 122285afcc9aSBarry Smith 12231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolationScale()` 122447c6ae99SBarry Smith @*/ 1225d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolation(DM dmc, DM dmf, Mat *mat, Vec *vec) 1226d71ae5a4SJacob Faibussowitsch { 122747c6ae99SBarry Smith PetscFunctionBegin; 1228a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1229a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 12304f572ea9SToby Isaac PetscAssertPointer(mat, 3); 12319566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInterpolation, dmc, dmf, 0, 0)); 1232dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createinterpolation, dmf, mat, vec); 12339566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInterpolation, dmc, dmf, 0, 0)); 12343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 123547c6ae99SBarry Smith } 123647c6ae99SBarry Smith 12373ad4599aSBarry Smith /*@ 1238a4e35b19SJacob Faibussowitsch DMCreateInterpolationScale - Forms L = 1/(R*1) where 1 is the vector of all ones, and R is 1239a4e35b19SJacob Faibussowitsch the transpose of the interpolation between the `DM`. 12402ed6491fSPatrick Sanan 12412ed6491fSPatrick Sanan Input Parameters: 1242bb7acecfSBarry Smith + dac - `DM` that defines a coarse mesh 1243bb7acecfSBarry Smith . daf - `DM` that defines a fine mesh 12442ed6491fSPatrick Sanan - mat - the restriction (or interpolation operator) from fine to coarse 12452ed6491fSPatrick Sanan 12462ed6491fSPatrick Sanan Output Parameter: 12472ed6491fSPatrick Sanan . scale - the scaled vector 12482ed6491fSPatrick Sanan 1249bb7acecfSBarry Smith Level: advanced 12502ed6491fSPatrick Sanan 125173ff1848SBarry Smith Note: 1252a4e35b19SJacob Faibussowitsch xcoarse = diag(L)*R*xfine preserves scale and is thus suitable for state (versus residual) 1253a4e35b19SJacob Faibussowitsch restriction. In other words xcoarse is the coarse representation of xfine. 1254a4e35b19SJacob Faibussowitsch 125573ff1848SBarry Smith Developer Note: 1256bb7acecfSBarry Smith If the fine-scale `DMDA` has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()` 1257e9c74fd6SRichard Tran Mills on the restriction/interpolation operator to set the bindingpropagates flag to true. 1258e9c74fd6SRichard Tran Mills 125960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatRestrict()`, `MatInterpolate()`, `DMCreateInterpolation()`, `DMCreateRestriction()`, `DMCreateGlobalVector()` 12602ed6491fSPatrick Sanan @*/ 1261d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolationScale(DM dac, DM daf, Mat mat, Vec *scale) 1262d71ae5a4SJacob Faibussowitsch { 12632ed6491fSPatrick Sanan Vec fine; 12642ed6491fSPatrick Sanan PetscScalar one = 1.0; 12659704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 1266e9c74fd6SRichard Tran Mills PetscBool bindingpropagates, isbound; 12679704db99SRichard Tran Mills #endif 12682ed6491fSPatrick Sanan 12692ed6491fSPatrick Sanan PetscFunctionBegin; 12709566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(daf, &fine)); 12719566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(dac, scale)); 12729566063dSJacob Faibussowitsch PetscCall(VecSet(fine, one)); 12739704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 12749704db99SRichard Tran Mills /* If the 'fine' Vec is bound to the CPU, it makes sense to bind 'mat' as well. 12759704db99SRichard Tran Mills * Note that we only do this for the CUDA case, right now, but if we add support for MatMultTranspose() via ViennaCL, 12769704db99SRichard Tran Mills * we'll need to do it for that case, too.*/ 12779566063dSJacob Faibussowitsch PetscCall(VecGetBindingPropagates(fine, &bindingpropagates)); 1278e9c74fd6SRichard Tran Mills if (bindingpropagates) { 12799566063dSJacob Faibussowitsch PetscCall(MatSetBindingPropagates(mat, PETSC_TRUE)); 12809566063dSJacob Faibussowitsch PetscCall(VecBoundToCPU(fine, &isbound)); 12819566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mat, isbound)); 128283aa49f4SRichard Tran Mills } 12839704db99SRichard Tran Mills #endif 12849566063dSJacob Faibussowitsch PetscCall(MatRestrict(mat, fine, *scale)); 12859566063dSJacob Faibussowitsch PetscCall(VecDestroy(&fine)); 12869566063dSJacob Faibussowitsch PetscCall(VecReciprocal(*scale)); 12873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12882ed6491fSPatrick Sanan } 12892ed6491fSPatrick Sanan 12902ed6491fSPatrick Sanan /*@ 1291bb7acecfSBarry Smith DMCreateRestriction - Gets restriction matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1292bb7acecfSBarry Smith `DMCreateGlobalVector()` on the fine `DM` to similar vectors on the coarse grid `DM`. 12933ad4599aSBarry Smith 129420f4b53cSBarry Smith Collective 12953ad4599aSBarry Smith 1296d8d19677SJose E. Roman Input Parameters: 1297bb7acecfSBarry Smith + dmc - the `DM` object 1298bb7acecfSBarry Smith - dmf - the second, finer `DM` object 12993ad4599aSBarry Smith 13003ad4599aSBarry Smith Output Parameter: 13013ad4599aSBarry Smith . mat - the restriction 13023ad4599aSBarry Smith 13033ad4599aSBarry Smith Level: developer 13043ad4599aSBarry Smith 1305bb7acecfSBarry Smith Note: 1306bb7acecfSBarry Smith This only works for `DMSTAG`. For many situations either the transpose of the operator obtained with `DMCreateInterpolation()` or that 1307bb7acecfSBarry Smith matrix multiplied by the vector obtained with `DMCreateInterpolationScale()` provides the desired object. 13083ad4599aSBarry Smith 13091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRestrict()`, `DMInterpolate()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateInterpolation()` 13103ad4599aSBarry Smith @*/ 1311d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateRestriction(DM dmc, DM dmf, Mat *mat) 1312d71ae5a4SJacob Faibussowitsch { 13133ad4599aSBarry Smith PetscFunctionBegin; 1314a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1315a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 13164f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13179566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateRestriction, dmc, dmf, 0, 0)); 1318dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createrestriction, dmf, mat); 13199566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateRestriction, dmc, dmf, 0, 0)); 13203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13213ad4599aSBarry Smith } 13223ad4599aSBarry Smith 132347c6ae99SBarry Smith /*@ 1324a4e35b19SJacob Faibussowitsch DMCreateInjection - Gets injection matrix between two `DM` objects. 132547c6ae99SBarry Smith 132620f4b53cSBarry Smith Collective 132747c6ae99SBarry Smith 1328d8d19677SJose E. Roman Input Parameters: 1329bb7acecfSBarry Smith + dac - the `DM` object 1330bb7acecfSBarry Smith - daf - the second, finer `DM` object 133147c6ae99SBarry Smith 133247c6ae99SBarry Smith Output Parameter: 13336dbf9973SLawrence Mitchell . mat - the injection 133447c6ae99SBarry Smith 133547c6ae99SBarry Smith Level: developer 133647c6ae99SBarry Smith 1337a4e35b19SJacob Faibussowitsch Notes: 1338a4e35b19SJacob Faibussowitsch This is an operator that applied to a vector obtained with `DMCreateGlobalVector()` on the 1339a4e35b19SJacob Faibussowitsch fine grid maps the values to a vector on the vector on the coarse `DM` by simply selecting 1340a4e35b19SJacob Faibussowitsch the values on the coarse grid points. This compares to the operator obtained by 1341a4e35b19SJacob Faibussowitsch `DMCreateRestriction()` or the transpose of the operator obtained by 1342a4e35b19SJacob Faibussowitsch `DMCreateInterpolation()` that uses a "local weighted average" of the values around the 1343a4e35b19SJacob Faibussowitsch coarse grid point as the coarse grid value. 1344a4e35b19SJacob Faibussowitsch 1345bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1346bb7acecfSBarry Smith `DMCoarsen()`. The coordinates set into the `DMDA` are completely ignored in computing the injection. 134785afcc9aSBarry Smith 13481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateInterpolation()`, 1349bb7acecfSBarry Smith `DMCreateRestriction()`, `MatRestrict()`, `MatInterpolate()` 135047c6ae99SBarry Smith @*/ 1351d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInjection(DM dac, DM daf, Mat *mat) 1352d71ae5a4SJacob Faibussowitsch { 135347c6ae99SBarry Smith PetscFunctionBegin; 1354a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dac, DM_CLASSID, 1); 1355a5bc1bf3SBarry Smith PetscValidHeaderSpecific(daf, DM_CLASSID, 2); 13564f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13579566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInjection, dac, daf, 0, 0)); 1358dbbe0bcdSBarry Smith PetscUseTypeMethod(dac, createinjection, daf, mat); 13599566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInjection, dac, daf, 0, 0)); 13603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 136147c6ae99SBarry Smith } 136247c6ae99SBarry Smith 1363b412c318SBarry Smith /*@ 1364bb7acecfSBarry Smith DMCreateMassMatrix - Gets the mass matrix between two `DM` objects, M_ij = \int \phi_i \psi_j where the \phi are Galerkin basis functions for a 1365bb7acecfSBarry Smith a Galerkin finite element model on the `DM` 1366bd041c0cSMatthew G. Knepley 136720f4b53cSBarry Smith Collective 1368bd041c0cSMatthew G. Knepley 1369d8d19677SJose E. Roman Input Parameters: 1370bb7acecfSBarry Smith + dmc - the target `DM` object 13718c1c0954SStefano Zampini - dmf - the source `DM` object, can be `NULL` 1372bd041c0cSMatthew G. Knepley 1373bd041c0cSMatthew G. Knepley Output Parameter: 1374b4937a87SMatthew G. Knepley . mat - the mass matrix 1375bd041c0cSMatthew G. Knepley 1376bd041c0cSMatthew G. Knepley Level: developer 1377bd041c0cSMatthew G. Knepley 1378bb7acecfSBarry Smith Notes: 1379bb7acecfSBarry Smith For `DMPLEX` the finite element model for the `DM` must have been already provided. 1380bb7acecfSBarry Smith 13818c1c0954SStefano Zampini if `dmc` is `dmf` or `NULL`, then x^t M x is an approximation to the L2 norm of the vector x which is obtained by `DMCreateGlobalVector()` 1382bb7acecfSBarry Smith 138342747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrixLumped()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1384bd041c0cSMatthew G. Knepley @*/ 1385d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrix(DM dmc, DM dmf, Mat *mat) 1386d71ae5a4SJacob Faibussowitsch { 1387bd041c0cSMatthew G. Knepley PetscFunctionBegin; 1388b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 13898c1c0954SStefano Zampini if (!dmf) dmf = dmc; 1390b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 13914f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13928c1c0954SStefano Zampini PetscCall(PetscLogEventBegin(DM_CreateMassMatrix, dmc, dmf, 0, 0)); 1393dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createmassmatrix, dmf, mat); 13948c1c0954SStefano Zampini PetscCall(PetscLogEventEnd(DM_CreateMassMatrix, dmc, dmf, 0, 0)); 13953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1396b4937a87SMatthew G. Knepley } 1397b4937a87SMatthew G. Knepley 1398b4937a87SMatthew G. Knepley /*@ 1399bb7acecfSBarry Smith DMCreateMassMatrixLumped - Gets the lumped mass matrix for a given `DM` 1400b4937a87SMatthew G. Knepley 140120f4b53cSBarry Smith Collective 1402b4937a87SMatthew G. Knepley 1403b4937a87SMatthew G. Knepley Input Parameter: 1404bb7acecfSBarry Smith . dm - the `DM` object 1405b4937a87SMatthew G. Knepley 14067dcfde4dSJose E. Roman Output Parameters: 14078e9849d2SStefano Zampini + llm - the local lumped mass matrix, which is a diagonal matrix, represented as a vector 14088e9849d2SStefano Zampini - lm - the global lumped mass matrix, which is a diagonal matrix, represented as a vector 1409b4937a87SMatthew G. Knepley 1410b4937a87SMatthew G. Knepley Level: developer 1411b4937a87SMatthew G. Knepley 1412bb7acecfSBarry Smith Note: 1413bb7acecfSBarry Smith See `DMCreateMassMatrix()` for how to create the non-lumped version of the mass matrix. 1414bb7acecfSBarry Smith 141560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrix()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1416b4937a87SMatthew G. Knepley @*/ 14178e9849d2SStefano Zampini PetscErrorCode DMCreateMassMatrixLumped(DM dm, Vec *llm, Vec *lm) 1418d71ae5a4SJacob Faibussowitsch { 1419b4937a87SMatthew G. Knepley PetscFunctionBegin; 1420b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14218e9849d2SStefano Zampini if (llm) PetscAssertPointer(llm, 2); 14228e9849d2SStefano Zampini if (lm) PetscAssertPointer(lm, 3); 14238e9849d2SStefano Zampini if (llm || lm) PetscUseTypeMethod(dm, createmassmatrixlumped, llm, lm); 14243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1425bd041c0cSMatthew G. Knepley } 1426bd041c0cSMatthew G. Knepley 1427bd041c0cSMatthew G. Knepley /*@ 1428bb7acecfSBarry Smith DMCreateColoring - Gets coloring of a graph associated with the `DM`. Often the graph represents the operator matrix associated with the discretization 1429bb7acecfSBarry Smith of a PDE on the `DM`. 143047c6ae99SBarry Smith 143120f4b53cSBarry Smith Collective 143247c6ae99SBarry Smith 1433d8d19677SJose E. Roman Input Parameters: 1434bb7acecfSBarry Smith + dm - the `DM` object 1435bb7acecfSBarry Smith - ctype - `IS_COLORING_LOCAL` or `IS_COLORING_GLOBAL` 143647c6ae99SBarry Smith 143747c6ae99SBarry Smith Output Parameter: 143847c6ae99SBarry Smith . coloring - the coloring 143947c6ae99SBarry Smith 14401bf8429eSBarry Smith Level: developer 14411bf8429eSBarry Smith 1442ec5066bdSBarry Smith Notes: 1443bb7acecfSBarry Smith Coloring of matrices can also be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 1444bb7acecfSBarry Smith matrix comes from (what this function provides). In general using the mesh produces a more optimal coloring (fewer colors). 1445ec5066bdSBarry Smith 1446bb7acecfSBarry Smith This produces a coloring with the distance of 2, see `MatSetColoringDistance()` which can be used for efficiently computing Jacobians with `MatFDColoringCreate()` 14471bf8429eSBarry Smith For `DMDA` in three dimensions with periodic boundary conditions the number of grid points in each dimension must be divisible by 2*stencil_width + 1, 14481bf8429eSBarry Smith otherwise an error will be generated. 1449ec5066bdSBarry Smith 14501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISColoring`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatType()`, `MatColoring`, `MatFDColoringCreate()` 1451aab9d709SJed Brown @*/ 1452d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateColoring(DM dm, ISColoringType ctype, ISColoring *coloring) 1453d71ae5a4SJacob Faibussowitsch { 145447c6ae99SBarry Smith PetscFunctionBegin; 1455171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14564f572ea9SToby Isaac PetscAssertPointer(coloring, 3); 1457dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getcoloring, ctype, coloring); 14583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 145947c6ae99SBarry Smith } 146047c6ae99SBarry Smith 1461b412c318SBarry Smith /*@ 1462bb7acecfSBarry Smith DMCreateMatrix - Gets an empty matrix for a `DM` that is most commonly used to store the Jacobian of a discrete PDE operator. 146347c6ae99SBarry Smith 146420f4b53cSBarry Smith Collective 146547c6ae99SBarry Smith 146647c6ae99SBarry Smith Input Parameter: 1467bb7acecfSBarry Smith . dm - the `DM` object 146847c6ae99SBarry Smith 146947c6ae99SBarry Smith Output Parameter: 147047c6ae99SBarry Smith . mat - the empty Jacobian 147147c6ae99SBarry Smith 147220f4b53cSBarry Smith Options Database Key: 1473bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 1474f27dd7c6SMatthew G. Knepley 147520f4b53cSBarry Smith Level: beginner 147620f4b53cSBarry Smith 147795452b02SPatrick Sanan Notes: 147895452b02SPatrick Sanan This properly preallocates the number of nonzeros in the sparse matrix so you 147994013140SBarry Smith do not need to do it yourself. 148094013140SBarry Smith 148194013140SBarry Smith By default it also sets the nonzero structure and puts in the zero entries. To prevent setting 1482bb7acecfSBarry Smith the nonzero pattern call `DMSetMatrixPreallocateOnly()` 148394013140SBarry Smith 1484bb7acecfSBarry Smith For `DMDA`, when you call `MatView()` on this matrix it is displayed using the global natural ordering, NOT in the ordering used 148594013140SBarry Smith internally by PETSc. 148694013140SBarry Smith 1487bb7acecfSBarry Smith For `DMDA`, in general it is easiest to use `MatSetValuesStencil()` or `MatSetValuesLocal()` to put values into the matrix because 1488bb7acecfSBarry Smith `MatSetValues()` requires the indices for the global numbering for the `DMDA` which is complic`ated to compute 148994013140SBarry Smith 14901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMSetMatType()`, `DMCreateMassMatrix()` 1491aab9d709SJed Brown @*/ 1492d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMatrix(DM dm, Mat *mat) 1493d71ae5a4SJacob Faibussowitsch { 149447c6ae99SBarry Smith PetscFunctionBegin; 1495171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14964f572ea9SToby Isaac PetscAssertPointer(mat, 2); 14979566063dSJacob Faibussowitsch PetscCall(MatInitializePackage()); 14989566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateMatrix, 0, 0, 0, 0)); 1499dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, creatematrix, mat); 150076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1501c6b011d8SStefano Zampini DM mdm; 1502c6b011d8SStefano Zampini 15039566063dSJacob Faibussowitsch PetscCall(MatGetDM(*mat, &mdm)); 15047a8be351SBarry Smith PetscCheck(mdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the matrix", ((PetscObject)dm)->type_name); 1505c6b011d8SStefano Zampini } 1506e571a35bSMatthew G. Knepley /* Handle nullspace and near nullspace */ 1507e5e52638SMatthew G. Knepley if (dm->Nf) { 1508e571a35bSMatthew G. Knepley MatNullSpace nullSpace; 1509649ef022SMatthew Knepley PetscInt Nf, f; 1510e571a35bSMatthew G. Knepley 15119566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 1512649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1513649ef022SMatthew Knepley if (dm->nullspaceConstructors[f]) { 15149566063dSJacob Faibussowitsch PetscCall((*dm->nullspaceConstructors[f])(dm, f, f, &nullSpace)); 15159566063dSJacob Faibussowitsch PetscCall(MatSetNullSpace(*mat, nullSpace)); 15169566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1517649ef022SMatthew Knepley break; 1518e571a35bSMatthew G. Knepley } 1519649ef022SMatthew Knepley } 1520649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1521649ef022SMatthew Knepley if (dm->nearnullspaceConstructors[f]) { 15229566063dSJacob Faibussowitsch PetscCall((*dm->nearnullspaceConstructors[f])(dm, f, f, &nullSpace)); 15239566063dSJacob Faibussowitsch PetscCall(MatSetNearNullSpace(*mat, nullSpace)); 15249566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1525e571a35bSMatthew G. Knepley } 1526e571a35bSMatthew G. Knepley } 1527e571a35bSMatthew G. Knepley } 15289566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateMatrix, 0, 0, 0, 0)); 15293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 153047c6ae99SBarry Smith } 153147c6ae99SBarry Smith 1532732e2eb9SMatthew G Knepley /*@ 1533a4e35b19SJacob Faibussowitsch DMSetMatrixPreallocateSkip - When `DMCreateMatrix()` is called the matrix sizes and 1534a4e35b19SJacob Faibussowitsch `ISLocalToGlobalMapping` will be properly set, but the data structures to store values in the 1535a4e35b19SJacob Faibussowitsch matrices will not be preallocated. 1536aa0f6e3cSJed Brown 153720f4b53cSBarry Smith Logically Collective 1538aa0f6e3cSJed Brown 1539aa0f6e3cSJed Brown Input Parameters: 1540bb7acecfSBarry Smith + dm - the `DM` 1541bb7acecfSBarry Smith - skip - `PETSC_TRUE` to skip preallocation 1542aa0f6e3cSJed Brown 1543aa0f6e3cSJed Brown Level: developer 1544aa0f6e3cSJed Brown 154573ff1848SBarry Smith Note: 1546a4e35b19SJacob Faibussowitsch This is most useful to reduce initialization costs when `MatSetPreallocationCOO()` and 1547a4e35b19SJacob Faibussowitsch `MatSetValuesCOO()` will be used. 1548a4e35b19SJacob Faibussowitsch 15491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateOnly()` 1550aa0f6e3cSJed Brown @*/ 1551d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateSkip(DM dm, PetscBool skip) 1552d71ae5a4SJacob Faibussowitsch { 1553aa0f6e3cSJed Brown PetscFunctionBegin; 1554aa0f6e3cSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1555aa0f6e3cSJed Brown dm->prealloc_skip = skip; 15563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1557aa0f6e3cSJed Brown } 1558aa0f6e3cSJed Brown 1559aa0f6e3cSJed Brown /*@ 1560bb7acecfSBarry Smith DMSetMatrixPreallocateOnly - When `DMCreateMatrix()` is called the matrix will be properly 1561732e2eb9SMatthew G Knepley preallocated but the nonzero structure and zero values will not be set. 1562732e2eb9SMatthew G Knepley 156320f4b53cSBarry Smith Logically Collective 1564732e2eb9SMatthew G Knepley 1565d8d19677SJose E. Roman Input Parameters: 1566bb7acecfSBarry Smith + dm - the `DM` 1567bb7acecfSBarry Smith - only - `PETSC_TRUE` if only want preallocation 1568732e2eb9SMatthew G Knepley 156920f4b53cSBarry Smith Options Database Key: 1570bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()`, `DMCreateMassMatrix()`, but do not fill it with zeros 1571f27dd7c6SMatthew G. Knepley 157220f4b53cSBarry Smith Level: developer 157320f4b53cSBarry Smith 15741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateSkip()` 1575732e2eb9SMatthew G Knepley @*/ 1576d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateOnly(DM dm, PetscBool only) 1577d71ae5a4SJacob Faibussowitsch { 1578732e2eb9SMatthew G Knepley PetscFunctionBegin; 1579732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1580732e2eb9SMatthew G Knepley dm->prealloc_only = only; 15813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1582732e2eb9SMatthew G Knepley } 1583732e2eb9SMatthew G Knepley 1584b06ff27eSHong Zhang /*@ 1585bb7acecfSBarry Smith DMSetMatrixStructureOnly - When `DMCreateMatrix()` is called, the matrix structure will be created 1586bb7acecfSBarry Smith but the array for numerical values will not be allocated. 1587b06ff27eSHong Zhang 158820f4b53cSBarry Smith Logically Collective 1589b06ff27eSHong Zhang 1590d8d19677SJose E. Roman Input Parameters: 1591bb7acecfSBarry Smith + dm - the `DM` 1592da81f932SPierre Jolivet - only - `PETSC_TRUE` if you only want matrix structure 1593b06ff27eSHong Zhang 1594b06ff27eSHong Zhang Level: developer 1595bb7acecfSBarry Smith 15961cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMSetMatrixPreallocateSkip()` 1597b06ff27eSHong Zhang @*/ 1598d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixStructureOnly(DM dm, PetscBool only) 1599d71ae5a4SJacob Faibussowitsch { 1600b06ff27eSHong Zhang PetscFunctionBegin; 1601b06ff27eSHong Zhang PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1602b06ff27eSHong Zhang dm->structure_only = only; 16033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1604b06ff27eSHong Zhang } 1605b06ff27eSHong Zhang 1606863027abSJed Brown /*@ 1607863027abSJed Brown DMSetBlockingType - set the blocking granularity to be used for variable block size `DMCreateMatrix()` is called 1608863027abSJed Brown 160920f4b53cSBarry Smith Logically Collective 1610863027abSJed Brown 1611863027abSJed Brown Input Parameters: 1612863027abSJed Brown + dm - the `DM` 1613863027abSJed Brown - btype - block by topological point or field node 1614863027abSJed Brown 161520f4b53cSBarry Smith Options Database Key: 16160e762ea3SJed Brown . -dm_blocking_type [topological_point, field_node] - use topological point blocking or field node blocking 1617863027abSJed Brown 161820f4b53cSBarry Smith Level: advanced 161920f4b53cSBarry Smith 16201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()` 1621863027abSJed Brown @*/ 1622863027abSJed Brown PetscErrorCode DMSetBlockingType(DM dm, DMBlockingType btype) 1623863027abSJed Brown { 1624863027abSJed Brown PetscFunctionBegin; 1625863027abSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1626863027abSJed Brown dm->blocking_type = btype; 16273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1628863027abSJed Brown } 1629863027abSJed Brown 1630863027abSJed Brown /*@ 1631863027abSJed Brown DMGetBlockingType - get the blocking granularity to be used for variable block size `DMCreateMatrix()` is called 1632863027abSJed Brown 1633863027abSJed Brown Not Collective 1634863027abSJed Brown 16352fe279fdSBarry Smith Input Parameter: 1636863027abSJed Brown . dm - the `DM` 1637863027abSJed Brown 16382fe279fdSBarry Smith Output Parameter: 1639863027abSJed Brown . btype - block by topological point or field node 1640863027abSJed Brown 1641863027abSJed Brown Level: advanced 1642863027abSJed Brown 16431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()` 1644863027abSJed Brown @*/ 1645863027abSJed Brown PetscErrorCode DMGetBlockingType(DM dm, DMBlockingType *btype) 1646863027abSJed Brown { 1647863027abSJed Brown PetscFunctionBegin; 1648863027abSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16494f572ea9SToby Isaac PetscAssertPointer(btype, 2); 1650863027abSJed Brown *btype = dm->blocking_type; 16513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1652863027abSJed Brown } 1653863027abSJed Brown 1654a89ea682SMatthew G Knepley /*@C 1655bb7acecfSBarry Smith DMGetWorkArray - Gets a work array guaranteed to be at least the input size, restore with `DMRestoreWorkArray()` 1656a89ea682SMatthew G Knepley 1657a89ea682SMatthew G Knepley Not Collective 1658a89ea682SMatthew G Knepley 1659a89ea682SMatthew G Knepley Input Parameters: 1660bb7acecfSBarry Smith + dm - the `DM` object 1661a5b23f4aSJose E. Roman . count - The minimum size 166220f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, or `MPIU_INT`) 1663a89ea682SMatthew G Knepley 1664a89ea682SMatthew G Knepley Output Parameter: 166560225df5SJacob Faibussowitsch . mem - the work array 1666a89ea682SMatthew G Knepley 1667a89ea682SMatthew G Knepley Level: developer 1668a89ea682SMatthew G Knepley 166973ff1848SBarry Smith Notes: 1670da81f932SPierre Jolivet A `DM` may stash the array between instantiations so using this routine may be more efficient than calling `PetscMalloc()` 1671bb7acecfSBarry Smith 1672bb7acecfSBarry Smith The array may contain nonzero values 1673bb7acecfSBarry Smith 16741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMRestoreWorkArray()`, `PetscMalloc()` 1675a89ea682SMatthew G Knepley @*/ 1676d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1677d71ae5a4SJacob Faibussowitsch { 1678aa1993deSMatthew G Knepley DMWorkLink link; 167969291d52SBarry Smith PetscMPIInt dsize; 1680a89ea682SMatthew G Knepley 1681a89ea682SMatthew G Knepley PetscFunctionBegin; 1682a89ea682SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16834f572ea9SToby Isaac PetscAssertPointer(mem, 4); 1684442f3b32SStefano Zampini if (!count) { 1685442f3b32SStefano Zampini *(void **)mem = NULL; 1686442f3b32SStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 1687442f3b32SStefano Zampini } 1688aa1993deSMatthew G Knepley if (dm->workin) { 1689aa1993deSMatthew G Knepley link = dm->workin; 1690aa1993deSMatthew G Knepley dm->workin = dm->workin->next; 1691aa1993deSMatthew G Knepley } else { 16924dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&link)); 1693a89ea682SMatthew G Knepley } 1694b77fa653SStefano Zampini /* Avoid MPI_Type_size for most used datatypes 1695b77fa653SStefano Zampini Get size directly */ 1696b77fa653SStefano Zampini if (dtype == MPIU_INT) dsize = sizeof(PetscInt); 1697b77fa653SStefano Zampini else if (dtype == MPIU_REAL) dsize = sizeof(PetscReal); 1698b77fa653SStefano Zampini #if defined(PETSC_USE_64BIT_INDICES) 1699b77fa653SStefano Zampini else if (dtype == MPI_INT) dsize = sizeof(int); 1700b77fa653SStefano Zampini #endif 1701b77fa653SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1702b77fa653SStefano Zampini else if (dtype == MPIU_SCALAR) dsize = sizeof(PetscScalar); 1703b77fa653SStefano Zampini #endif 1704b77fa653SStefano Zampini else PetscCallMPI(MPI_Type_size(dtype, &dsize)); 1705b77fa653SStefano Zampini 17065056fcd2SBarry Smith if (((size_t)dsize * count) > link->bytes) { 17079566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 17089566063dSJacob Faibussowitsch PetscCall(PetscMalloc(dsize * count, &link->mem)); 1709854ce69bSBarry Smith link->bytes = dsize * count; 1710aa1993deSMatthew G Knepley } 1711aa1993deSMatthew G Knepley link->next = dm->workout; 1712aa1993deSMatthew G Knepley dm->workout = link; 1713aa1993deSMatthew G Knepley *(void **)mem = link->mem; 17143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1715a89ea682SMatthew G Knepley } 1716a89ea682SMatthew G Knepley 1717aa1993deSMatthew G Knepley /*@C 1718bb7acecfSBarry Smith DMRestoreWorkArray - Restores a work array obtained with `DMCreateWorkArray()` 1719aa1993deSMatthew G Knepley 1720aa1993deSMatthew G Knepley Not Collective 1721aa1993deSMatthew G Knepley 1722aa1993deSMatthew G Knepley Input Parameters: 1723bb7acecfSBarry Smith + dm - the `DM` object 1724a5b23f4aSJose E. Roman . count - The minimum size 172520f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, `MPIU_INT` 1726aa1993deSMatthew G Knepley 1727aa1993deSMatthew G Knepley Output Parameter: 172860225df5SJacob Faibussowitsch . mem - the work array 1729aa1993deSMatthew G Knepley 1730aa1993deSMatthew G Knepley Level: developer 1731aa1993deSMatthew G Knepley 173273ff1848SBarry Smith Developer Note: 1733bb7acecfSBarry Smith count and dtype are ignored, they are only needed for `DMGetWorkArray()` 1734147403d9SBarry Smith 17351cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMGetWorkArray()` 1736aa1993deSMatthew G Knepley @*/ 1737d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestoreWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1738d71ae5a4SJacob Faibussowitsch { 1739aa1993deSMatthew G Knepley DMWorkLink *p, link; 1740aa1993deSMatthew G Knepley 1741aa1993deSMatthew G Knepley PetscFunctionBegin; 1742aa1993deSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17434f572ea9SToby Isaac PetscAssertPointer(mem, 4); 1744a4e35b19SJacob Faibussowitsch (void)count; 1745a4e35b19SJacob Faibussowitsch (void)dtype; 1746442f3b32SStefano Zampini if (!*(void **)mem) PetscFunctionReturn(PETSC_SUCCESS); 1747aa1993deSMatthew G Knepley for (p = &dm->workout; (link = *p); p = &link->next) { 1748aa1993deSMatthew G Knepley if (link->mem == *(void **)mem) { 1749aa1993deSMatthew G Knepley *p = link->next; 1750aa1993deSMatthew G Knepley link->next = dm->workin; 1751aa1993deSMatthew G Knepley dm->workin = link; 17520298fd71SBarry Smith *(void **)mem = NULL; 17533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1754aa1993deSMatthew G Knepley } 1755aa1993deSMatthew G Knepley } 1756aa1993deSMatthew G Knepley SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Array was not checked out"); 1757aa1993deSMatthew G Knepley } 1758e7c4fc90SDmitry Karpeev 17598cda7954SMatthew G. Knepley /*@C 1760bb7acecfSBarry Smith DMSetNullSpaceConstructor - Provide a callback function which constructs the nullspace for a given field, defined with `DMAddField()`, when function spaces 1761bb7acecfSBarry Smith are joined or split, such as in `DMCreateSubDM()` 17628cda7954SMatthew G. Knepley 176320f4b53cSBarry Smith Logically Collective; No Fortran Support 17648cda7954SMatthew G. Knepley 17658cda7954SMatthew G. Knepley Input Parameters: 1766bb7acecfSBarry Smith + dm - The `DM` 17678cda7954SMatthew G. Knepley . field - The field number for the nullspace 17688cda7954SMatthew G. Knepley - nullsp - A callback to create the nullspace 17698cda7954SMatthew G. Knepley 177020f4b53cSBarry Smith Calling sequence of `nullsp`: 1771bb7acecfSBarry Smith + dm - The present `DM` 1772bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1773147403d9SBarry Smith . field - The field number in dm 1774147403d9SBarry Smith - nullSpace - The nullspace for the given field 17758cda7954SMatthew G. Knepley 177649762cbcSSatish Balay Level: intermediate 177749762cbcSSatish Balay 17781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1779147403d9SBarry Smith @*/ 1780a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1781d71ae5a4SJacob Faibussowitsch { 1782435a35e8SMatthew G Knepley PetscFunctionBegin; 1783435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17847a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1785435a35e8SMatthew G Knepley dm->nullspaceConstructors[field] = nullsp; 17863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1787435a35e8SMatthew G Knepley } 1788435a35e8SMatthew G Knepley 17898cda7954SMatthew G. Knepley /*@C 1790bb7acecfSBarry Smith DMGetNullSpaceConstructor - Return the callback function which constructs the nullspace for a given field, defined with `DMAddField()` 17918cda7954SMatthew G. Knepley 179220f4b53cSBarry Smith Not Collective; No Fortran Support 17938cda7954SMatthew G. Knepley 17948cda7954SMatthew G. Knepley Input Parameters: 1795bb7acecfSBarry Smith + dm - The `DM` 17968cda7954SMatthew G. Knepley - field - The field number for the nullspace 17978cda7954SMatthew G. Knepley 17988cda7954SMatthew G. Knepley Output Parameter: 17998cda7954SMatthew G. Knepley . nullsp - A callback to create the nullspace 18008cda7954SMatthew G. Knepley 180120f4b53cSBarry Smith Calling sequence of `nullsp`: 1802147403d9SBarry Smith + dm - The present DM 1803147403d9SBarry Smith . origField - The field number given above, in the original DM 1804147403d9SBarry Smith . field - The field number in dm 1805147403d9SBarry Smith - nullSpace - The nullspace for the given field 18068cda7954SMatthew G. Knepley 180749762cbcSSatish Balay Level: intermediate 180849762cbcSSatish Balay 18091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1810147403d9SBarry Smith @*/ 1811a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1812d71ae5a4SJacob Faibussowitsch { 18130a50eb56SMatthew G. Knepley PetscFunctionBegin; 18140a50eb56SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18154f572ea9SToby Isaac PetscAssertPointer(nullsp, 3); 18167a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 18170a50eb56SMatthew G. Knepley *nullsp = dm->nullspaceConstructors[field]; 18183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18190a50eb56SMatthew G. Knepley } 18200a50eb56SMatthew G. Knepley 18218cda7954SMatthew G. Knepley /*@C 1822bb7acecfSBarry Smith DMSetNearNullSpaceConstructor - Provide a callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 18238cda7954SMatthew G. Knepley 182420f4b53cSBarry Smith Logically Collective; No Fortran Support 18258cda7954SMatthew G. Knepley 18268cda7954SMatthew G. Knepley Input Parameters: 1827bb7acecfSBarry Smith + dm - The `DM` 18288cda7954SMatthew G. Knepley . field - The field number for the nullspace 18298cda7954SMatthew G. Knepley - nullsp - A callback to create the near-nullspace 18308cda7954SMatthew G. Knepley 183120f4b53cSBarry Smith Calling sequence of `nullsp`: 1832bb7acecfSBarry Smith + dm - The present `DM` 1833bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1834147403d9SBarry Smith . field - The field number in dm 1835147403d9SBarry Smith - nullSpace - The nullspace for the given field 18368cda7954SMatthew G. Knepley 183749762cbcSSatish Balay Level: intermediate 183849762cbcSSatish Balay 18391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`, 1840bb7acecfSBarry Smith `MatNullSpace` 1841147403d9SBarry Smith @*/ 1842a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1843d71ae5a4SJacob Faibussowitsch { 1844f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1845f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18467a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1847f9d4088aSMatthew G. Knepley dm->nearnullspaceConstructors[field] = nullsp; 18483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1849f9d4088aSMatthew G. Knepley } 1850f9d4088aSMatthew G. Knepley 18518cda7954SMatthew G. Knepley /*@C 1852bb7acecfSBarry Smith DMGetNearNullSpaceConstructor - Return the callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 18538cda7954SMatthew G. Knepley 185420f4b53cSBarry Smith Not Collective; No Fortran Support 18558cda7954SMatthew G. Knepley 18568cda7954SMatthew G. Knepley Input Parameters: 1857bb7acecfSBarry Smith + dm - The `DM` 18588cda7954SMatthew G. Knepley - field - The field number for the nullspace 18598cda7954SMatthew G. Knepley 18608cda7954SMatthew G. Knepley Output Parameter: 18618cda7954SMatthew G. Knepley . nullsp - A callback to create the near-nullspace 18628cda7954SMatthew G. Knepley 186320f4b53cSBarry Smith Calling sequence of `nullsp`: 1864bb7acecfSBarry Smith + dm - The present `DM` 1865bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1866147403d9SBarry Smith . field - The field number in dm 1867147403d9SBarry Smith - nullSpace - The nullspace for the given field 18688cda7954SMatthew G. Knepley 186949762cbcSSatish Balay Level: intermediate 187049762cbcSSatish Balay 18711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, 1872bb7acecfSBarry Smith `MatNullSpace`, `DMCreateSuperDM()` 1873147403d9SBarry Smith @*/ 1874a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1875d71ae5a4SJacob Faibussowitsch { 1876f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1877f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18784f572ea9SToby Isaac PetscAssertPointer(nullsp, 3); 18797a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1880f9d4088aSMatthew G. Knepley *nullsp = dm->nearnullspaceConstructors[field]; 18813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1882f9d4088aSMatthew G. Knepley } 1883f9d4088aSMatthew G. Knepley 18844f3b5142SJed Brown /*@C 1885bb7acecfSBarry Smith DMCreateFieldIS - Creates a set of `IS` objects with the global indices of dofs for each field defined with `DMAddField()` 18864d343eeaSMatthew G Knepley 188720f4b53cSBarry Smith Not Collective; No Fortran Support 18884d343eeaSMatthew G Knepley 18894d343eeaSMatthew G Knepley Input Parameter: 1890bb7acecfSBarry Smith . dm - the `DM` object 18914d343eeaSMatthew G Knepley 18924d343eeaSMatthew G Knepley Output Parameters: 189320f4b53cSBarry Smith + numFields - The number of fields (or `NULL` if not requested) 189420f4b53cSBarry Smith . fieldNames - The number of each field (or `NULL` if not requested) 189520f4b53cSBarry Smith - fields - The global indices for each field (or `NULL` if not requested) 18964d343eeaSMatthew G Knepley 18974d343eeaSMatthew G Knepley Level: intermediate 18984d343eeaSMatthew G Knepley 1899bb7acecfSBarry Smith Note: 190073ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `fieldNames` should be freed with 190173ff1848SBarry Smith `PetscFree()`, every entry of `fields` should be destroyed with `ISDestroy()`, and both arrays should be freed with 1902bb7acecfSBarry Smith `PetscFree()`. 190321c9b008SJed Brown 190473ff1848SBarry Smith Developer Note: 1905bb7acecfSBarry Smith It is not clear why both this function and `DMCreateFieldDecomposition()` exist. Having two seems redundant and confusing. This function should 1906bb7acecfSBarry Smith likely be removed. 1907bb7acecfSBarry Smith 19081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1909bb7acecfSBarry Smith `DMCreateFieldDecomposition()` 19104d343eeaSMatthew G Knepley @*/ 1911d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldIS(DM dm, PetscInt *numFields, char ***fieldNames, IS **fields) 1912d71ae5a4SJacob Faibussowitsch { 191337d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 19144d343eeaSMatthew G Knepley 19154d343eeaSMatthew G Knepley PetscFunctionBegin; 19164d343eeaSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 191769ca1f37SDmitry Karpeev if (numFields) { 19184f572ea9SToby Isaac PetscAssertPointer(numFields, 2); 191969ca1f37SDmitry Karpeev *numFields = 0; 192069ca1f37SDmitry Karpeev } 192137d0c07bSMatthew G Knepley if (fieldNames) { 19224f572ea9SToby Isaac PetscAssertPointer(fieldNames, 3); 19230298fd71SBarry Smith *fieldNames = NULL; 192469ca1f37SDmitry Karpeev } 192569ca1f37SDmitry Karpeev if (fields) { 19264f572ea9SToby Isaac PetscAssertPointer(fields, 4); 19270298fd71SBarry Smith *fields = NULL; 192869ca1f37SDmitry Karpeev } 19299566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 193037d0c07bSMatthew G Knepley if (section) { 19313a544194SStefano Zampini PetscInt *fieldSizes, *fieldNc, **fieldIndices; 193237d0c07bSMatthew G Knepley PetscInt nF, f, pStart, pEnd, p; 193337d0c07bSMatthew G Knepley 19349566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 19359566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &nF)); 19369566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nF, &fieldSizes, nF, &fieldNc, nF, &fieldIndices)); 19379566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd)); 193837d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 193937d0c07bSMatthew G Knepley fieldSizes[f] = 0; 19409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &fieldNc[f])); 194137d0c07bSMatthew G Knepley } 194237d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 194337d0c07bSMatthew G Knepley PetscInt gdof; 194437d0c07bSMatthew G Knepley 19459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 194637d0c07bSMatthew G Knepley if (gdof > 0) { 194737d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19483a544194SStefano Zampini PetscInt fdof, fcdof, fpdof; 194937d0c07bSMatthew G Knepley 19509566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19519566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 19523a544194SStefano Zampini fpdof = fdof - fcdof; 19533a544194SStefano Zampini if (fpdof && fpdof != fieldNc[f]) { 19543a544194SStefano Zampini /* Layout does not admit a pointwise block size */ 19553a544194SStefano Zampini fieldNc[f] = 1; 19563a544194SStefano Zampini } 19573a544194SStefano Zampini fieldSizes[f] += fpdof; 195837d0c07bSMatthew G Knepley } 195937d0c07bSMatthew G Knepley } 196037d0c07bSMatthew G Knepley } 196137d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(fieldSizes[f], &fieldIndices[f])); 196337d0c07bSMatthew G Knepley fieldSizes[f] = 0; 196437d0c07bSMatthew G Knepley } 196537d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 196637d0c07bSMatthew G Knepley PetscInt gdof, goff; 196737d0c07bSMatthew G Knepley 19689566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 196937d0c07bSMatthew G Knepley if (gdof > 0) { 19709566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &goff)); 197137d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 197237d0c07bSMatthew G Knepley PetscInt fdof, fcdof, fc; 197337d0c07bSMatthew G Knepley 19749566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 1976ad540459SPierre Jolivet for (fc = 0; fc < fdof - fcdof; ++fc, ++fieldSizes[f]) fieldIndices[f][fieldSizes[f]] = goff++; 197737d0c07bSMatthew G Knepley } 197837d0c07bSMatthew G Knepley } 197937d0c07bSMatthew G Knepley } 19808865f1eaSKarl Rupp if (numFields) *numFields = nF; 198137d0c07bSMatthew G Knepley if (fieldNames) { 19829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fieldNames)); 198337d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 198437d0c07bSMatthew G Knepley const char *fieldName; 198537d0c07bSMatthew G Knepley 19869566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 1987835f2295SStefano Zampini PetscCall(PetscStrallocpy(fieldName, &(*fieldNames)[f])); 198837d0c07bSMatthew G Knepley } 198937d0c07bSMatthew G Knepley } 199037d0c07bSMatthew G Knepley if (fields) { 19919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fields)); 199237d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19933a544194SStefano Zampini PetscInt bs, in[2], out[2]; 19943a544194SStefano Zampini 19959566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), fieldSizes[f], fieldIndices[f], PETSC_OWN_POINTER, &(*fields)[f])); 19963a544194SStefano Zampini in[0] = -fieldNc[f]; 19973a544194SStefano Zampini in[1] = fieldNc[f]; 1998462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 19993a544194SStefano Zampini bs = (-out[0] == out[1]) ? out[1] : 1; 20009566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize((*fields)[f], bs)); 200137d0c07bSMatthew G Knepley } 200237d0c07bSMatthew G Knepley } 20039566063dSJacob Faibussowitsch PetscCall(PetscFree3(fieldSizes, fieldNc, fieldIndices)); 2004dbbe0bcdSBarry Smith } else PetscTryTypeMethod(dm, createfieldis, numFields, fieldNames, fields); 20053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20064d343eeaSMatthew G Knepley } 20074d343eeaSMatthew G Knepley 200816621825SDmitry Karpeev /*@C 2009bb7acecfSBarry Smith DMCreateFieldDecomposition - Returns a list of `IS` objects defining a decomposition of a problem into subproblems 2010a4e35b19SJacob Faibussowitsch corresponding to different fields. 2011e7c4fc90SDmitry Karpeev 201220f4b53cSBarry Smith Not Collective; No Fortran Support 2013e7c4fc90SDmitry Karpeev 2014e7c4fc90SDmitry Karpeev Input Parameter: 2015bb7acecfSBarry Smith . dm - the `DM` object 2016e7c4fc90SDmitry Karpeev 2017e7c4fc90SDmitry Karpeev Output Parameters: 201820f4b53cSBarry Smith + len - The number of fields (or `NULL` if not requested) 201920f4b53cSBarry Smith . namelist - The name for each field (or `NULL` if not requested) 202020f4b53cSBarry Smith . islist - The global indices for each field (or `NULL` if not requested) 202120f4b53cSBarry Smith - dmlist - The `DM`s for each field subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined) 2022e7c4fc90SDmitry Karpeev 2023e7c4fc90SDmitry Karpeev Level: intermediate 2024e7c4fc90SDmitry Karpeev 2025a4e35b19SJacob Faibussowitsch Notes: 2026a4e35b19SJacob Faibussowitsch Each `IS` contains the global indices of the dofs of the corresponding field, defined by 2027a4e35b19SJacob Faibussowitsch `DMAddField()`. The optional list of `DM`s define the `DM` for each subproblem. 2028a4e35b19SJacob Faibussowitsch 2029a4e35b19SJacob Faibussowitsch The same as `DMCreateFieldIS()` but also returns a `DM` for each field. 2030a4e35b19SJacob Faibussowitsch 203173ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with 203273ff1848SBarry Smith `PetscFree()`, every entry of `islist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`, 2033bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 2034e7c4fc90SDmitry Karpeev 203560225df5SJacob Faibussowitsch Developer Notes: 2036bb7acecfSBarry Smith It is not clear why this function and `DMCreateFieldIS()` exist. Having two seems redundant and confusing. 2037bb7acecfSBarry Smith 203873ff1848SBarry Smith Unlike `DMRefine()`, `DMCoarsen()`, and `DMCreateDomainDecomposition()` this provides no mechanism to provide hooks that are called after the 203973ff1848SBarry Smith decomposition is computed. 204073ff1848SBarry Smith 204173ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMCreateFieldIS()`, `DMCreateSubDM()`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()` 2042e7c4fc90SDmitry Karpeev @*/ 2043d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldDecomposition(DM dm, PetscInt *len, char ***namelist, IS **islist, DM **dmlist) 2044d71ae5a4SJacob Faibussowitsch { 2045e7c4fc90SDmitry Karpeev PetscFunctionBegin; 2046e7c4fc90SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 20478865f1eaSKarl Rupp if (len) { 20484f572ea9SToby Isaac PetscAssertPointer(len, 2); 20498865f1eaSKarl Rupp *len = 0; 20508865f1eaSKarl Rupp } 20518865f1eaSKarl Rupp if (namelist) { 20524f572ea9SToby Isaac PetscAssertPointer(namelist, 3); 2053ea78f98cSLisandro Dalcin *namelist = NULL; 20548865f1eaSKarl Rupp } 20558865f1eaSKarl Rupp if (islist) { 20564f572ea9SToby Isaac PetscAssertPointer(islist, 4); 2057ea78f98cSLisandro Dalcin *islist = NULL; 20588865f1eaSKarl Rupp } 20598865f1eaSKarl Rupp if (dmlist) { 20604f572ea9SToby Isaac PetscAssertPointer(dmlist, 5); 2061ea78f98cSLisandro Dalcin *dmlist = NULL; 20628865f1eaSKarl Rupp } 2063f3f0edfdSDmitry Karpeev /* 2064f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2065f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2066f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2067f3f0edfdSDmitry Karpeev */ 20687a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 206916621825SDmitry Karpeev if (!dm->ops->createfielddecomposition) { 2070435a35e8SMatthew G Knepley PetscSection section; 2071435a35e8SMatthew G Knepley PetscInt numFields, f; 2072435a35e8SMatthew G Knepley 20739566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 20749566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(section, &numFields)); 2075435a35e8SMatthew G Knepley if (section && numFields && dm->ops->createsubdm) { 2076f25d98f1SMatthew G. Knepley if (len) *len = numFields; 20779566063dSJacob Faibussowitsch if (namelist) PetscCall(PetscMalloc1(numFields, namelist)); 20789566063dSJacob Faibussowitsch if (islist) PetscCall(PetscMalloc1(numFields, islist)); 20799566063dSJacob Faibussowitsch if (dmlist) PetscCall(PetscMalloc1(numFields, dmlist)); 2080435a35e8SMatthew G Knepley for (f = 0; f < numFields; ++f) { 2081435a35e8SMatthew G Knepley const char *fieldName; 2082435a35e8SMatthew G Knepley 20839566063dSJacob Faibussowitsch PetscCall(DMCreateSubDM(dm, 1, &f, islist ? &(*islist)[f] : NULL, dmlist ? &(*dmlist)[f] : NULL)); 208403dc3394SMatthew G. Knepley if (namelist) { 20859566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 2086835f2295SStefano Zampini PetscCall(PetscStrallocpy(fieldName, &(*namelist)[f])); 2087435a35e8SMatthew G Knepley } 208803dc3394SMatthew G. Knepley } 2089435a35e8SMatthew G Knepley } else { 20909566063dSJacob Faibussowitsch PetscCall(DMCreateFieldIS(dm, len, namelist, islist)); 2091e7c4fc90SDmitry Karpeev /* By default there are no DMs associated with subproblems. */ 20920298fd71SBarry Smith if (dmlist) *dmlist = NULL; 2093e7c4fc90SDmitry Karpeev } 2094dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, createfielddecomposition, len, namelist, islist, dmlist); 20953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 209616621825SDmitry Karpeev } 209716621825SDmitry Karpeev 20985d83a8b1SBarry Smith /*@ 209920f4b53cSBarry Smith DMCreateSubDM - Returns an `IS` and `DM` encapsulating a subproblem defined by the fields passed in. 210020f4b53cSBarry Smith The fields are defined by `DMCreateFieldIS()`. 2101435a35e8SMatthew G Knepley 2102435a35e8SMatthew G Knepley Not collective 2103435a35e8SMatthew G Knepley 2104435a35e8SMatthew G Knepley Input Parameters: 2105bb7acecfSBarry Smith + dm - The `DM` object 2106bb7acecfSBarry Smith . numFields - The number of fields to select 21072adcc780SMatthew G. Knepley - fields - The field numbers of the selected fields 2108435a35e8SMatthew G Knepley 2109435a35e8SMatthew G Knepley Output Parameters: 2110b6971eaeSBarry Smith + is - The global indices for all the degrees of freedom in the new sub `DM`, use `NULL` if not needed 2111b6971eaeSBarry Smith - subdm - The `DM` for the subproblem, use `NULL` if not needed 2112435a35e8SMatthew G Knepley 211320f4b53cSBarry Smith Level: intermediate 211420f4b53cSBarry Smith 2115bb7acecfSBarry Smith Note: 2116bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 21175d3b26e6SMatthew G. Knepley 211860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateFieldIS()`, `DMCreateFieldDecomposition()`, `DMAddField()`, `DMCreateSuperDM()`, `IS`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 2119435a35e8SMatthew G Knepley @*/ 2120d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSubDM(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm) 2121d71ae5a4SJacob Faibussowitsch { 2122435a35e8SMatthew G Knepley PetscFunctionBegin; 2123435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 21244f572ea9SToby Isaac PetscAssertPointer(fields, 3); 21254f572ea9SToby Isaac if (is) PetscAssertPointer(is, 4); 21264f572ea9SToby Isaac if (subdm) PetscAssertPointer(subdm, 5); 2127dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createsubdm, numFields, fields, is, subdm); 21283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2129435a35e8SMatthew G Knepley } 2130435a35e8SMatthew G Knepley 21312adcc780SMatthew G. Knepley /*@C 2132bb7acecfSBarry Smith DMCreateSuperDM - Returns an arrays of `IS` and `DM` encapsulating a superproblem defined by multiple `DM`s passed in. 21332adcc780SMatthew G. Knepley 21342adcc780SMatthew G. Knepley Not collective 21352adcc780SMatthew G. Knepley 2136d8d19677SJose E. Roman Input Parameters: 2137bb7acecfSBarry Smith + dms - The `DM` objects 2138bb7acecfSBarry Smith - n - The number of `DM`s 21392adcc780SMatthew G. Knepley 21402adcc780SMatthew G. Knepley Output Parameters: 2141bb7acecfSBarry Smith + is - The global indices for each of subproblem within the super `DM`, or NULL 2142bb7acecfSBarry Smith - superdm - The `DM` for the superproblem 21432adcc780SMatthew G. Knepley 214420f4b53cSBarry Smith Level: intermediate 214520f4b53cSBarry Smith 2146bb7acecfSBarry Smith Note: 2147bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 21485d3b26e6SMatthew G. Knepley 214973ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateSubDM()`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`, `DMCreateDomainDecomposition()` 21502adcc780SMatthew G. Knepley @*/ 21515d83a8b1SBarry Smith PetscErrorCode DMCreateSuperDM(DM dms[], PetscInt n, IS *is[], DM *superdm) 2152d71ae5a4SJacob Faibussowitsch { 21532adcc780SMatthew G. Knepley PetscInt i; 21542adcc780SMatthew G. Knepley 21552adcc780SMatthew G. Knepley PetscFunctionBegin; 21564f572ea9SToby Isaac PetscAssertPointer(dms, 1); 2157ad540459SPierre Jolivet for (i = 0; i < n; ++i) PetscValidHeaderSpecific(dms[i], DM_CLASSID, 1); 21584f572ea9SToby Isaac if (is) PetscAssertPointer(is, 3); 21594f572ea9SToby Isaac PetscAssertPointer(superdm, 4); 2160bb7acecfSBarry Smith PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of DMs must be nonnegative: %" PetscInt_FMT, n); 2161bb7acecfSBarry Smith if (n) { 2162b9d85ea2SLisandro Dalcin DM dm = dms[0]; 216300045ab3SPierre Jolivet PetscCheck(dm->ops->createsuperdm, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No method createsuperdm for DM of type %s", ((PetscObject)dm)->type_name); 2164dbbe0bcdSBarry Smith PetscCall((*dm->ops->createsuperdm)(dms, n, is, superdm)); 21652adcc780SMatthew G. Knepley } 21663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21672adcc780SMatthew G. Knepley } 21682adcc780SMatthew G. Knepley 216916621825SDmitry Karpeev /*@C 2170a4e35b19SJacob Faibussowitsch DMCreateDomainDecomposition - Returns lists of `IS` objects defining a decomposition of a 2171a4e35b19SJacob Faibussowitsch problem into subproblems corresponding to restrictions to pairs of nested subdomains. 217216621825SDmitry Karpeev 217320f4b53cSBarry Smith Not Collective 217416621825SDmitry Karpeev 217516621825SDmitry Karpeev Input Parameter: 2176bb7acecfSBarry Smith . dm - the `DM` object 217716621825SDmitry Karpeev 217816621825SDmitry Karpeev Output Parameters: 217920f4b53cSBarry Smith + n - The number of subproblems in the domain decomposition (or `NULL` if not requested) 218020f4b53cSBarry Smith . namelist - The name for each subdomain (or `NULL` if not requested) 218173ff1848SBarry Smith . innerislist - The global indices for each inner subdomain (or `NULL`, if not requested) 218273ff1848SBarry Smith . outerislist - The global indices for each outer subdomain (or `NULL`, if not requested) 218373ff1848SBarry Smith - dmlist - The `DM`s for each subdomain subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined) 218416621825SDmitry Karpeev 218516621825SDmitry Karpeev Level: intermediate 218616621825SDmitry Karpeev 218773ff1848SBarry Smith Notes: 2188a4e35b19SJacob Faibussowitsch Each `IS` contains the global indices of the dofs of the corresponding subdomains with in the 2189a4e35b19SJacob Faibussowitsch dofs of the original `DM`. The inner subdomains conceptually define a nonoverlapping 2190a4e35b19SJacob Faibussowitsch covering, while outer subdomains can overlap. 2191a4e35b19SJacob Faibussowitsch 2192a4e35b19SJacob Faibussowitsch The optional list of `DM`s define a `DM` for each subproblem. 2193a4e35b19SJacob Faibussowitsch 219473ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with 219573ff1848SBarry Smith `PetscFree()`, every entry of `innerislist` and `outerislist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`, 2196bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 219716621825SDmitry Karpeev 2198a4e35b19SJacob Faibussowitsch Developer Notes: 219920f4b53cSBarry Smith The `dmlist` is for the inner subdomains or the outer subdomains or all subdomains? 2200bb7acecfSBarry Smith 220173ff1848SBarry Smith The names are inconsistent, the hooks use `DMSubDomainHook` which is nothing like `DMCreateDomainDecomposition()` while `DMRefineHook` is used for `DMRefine()`. 220273ff1848SBarry Smith 220373ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateFieldDecomposition()`, `DMDestroy()`, `DMCreateDomainDecompositionScatters()`, `DMView()`, `DMCreateInterpolation()`, 220473ff1848SBarry Smith `DMSubDomainHookAdd()`, `DMSubDomainHookRemove()`,`DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()` 220516621825SDmitry Karpeev @*/ 2206d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecomposition(DM dm, PetscInt *n, char ***namelist, IS **innerislist, IS **outerislist, DM **dmlist) 2207d71ae5a4SJacob Faibussowitsch { 2208be081cd6SPeter Brune DMSubDomainHookLink link; 2209be081cd6SPeter Brune PetscInt i, l; 221016621825SDmitry Karpeev 221116621825SDmitry Karpeev PetscFunctionBegin; 221216621825SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 22139371c9d4SSatish Balay if (n) { 22144f572ea9SToby Isaac PetscAssertPointer(n, 2); 22159371c9d4SSatish Balay *n = 0; 22169371c9d4SSatish Balay } 22179371c9d4SSatish Balay if (namelist) { 22184f572ea9SToby Isaac PetscAssertPointer(namelist, 3); 22199371c9d4SSatish Balay *namelist = NULL; 22209371c9d4SSatish Balay } 22219371c9d4SSatish Balay if (innerislist) { 22224f572ea9SToby Isaac PetscAssertPointer(innerislist, 4); 22239371c9d4SSatish Balay *innerislist = NULL; 22249371c9d4SSatish Balay } 22259371c9d4SSatish Balay if (outerislist) { 22264f572ea9SToby Isaac PetscAssertPointer(outerislist, 5); 22279371c9d4SSatish Balay *outerislist = NULL; 22289371c9d4SSatish Balay } 22299371c9d4SSatish Balay if (dmlist) { 22304f572ea9SToby Isaac PetscAssertPointer(dmlist, 6); 22319371c9d4SSatish Balay *dmlist = NULL; 22329371c9d4SSatish Balay } 2233f3f0edfdSDmitry Karpeev /* 2234f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2235f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2236f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2237f3f0edfdSDmitry Karpeev */ 22387a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 223916621825SDmitry Karpeev if (dm->ops->createdomaindecomposition) { 2240dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createdomaindecomposition, &l, namelist, innerislist, outerislist, dmlist); 224114a18fd3SPeter Brune /* copy subdomain hooks and context over to the subdomain DMs */ 2242f891f5b9SPatrick Sanan if (dmlist && *dmlist) { 2243be081cd6SPeter Brune for (i = 0; i < l; i++) { 2244be081cd6SPeter Brune for (link = dm->subdomainhook; link; link = link->next) { 22459566063dSJacob Faibussowitsch if (link->ddhook) PetscCall((*link->ddhook)(dm, (*dmlist)[i], link->ctx)); 2246be081cd6SPeter Brune } 2247648262bbSPatrick Sanan if (dm->ctx) (*dmlist)[i]->ctx = dm->ctx; 2248e7c4fc90SDmitry Karpeev } 224914a18fd3SPeter Brune } 2250bb7acecfSBarry Smith if (n) *n = l; 225114a18fd3SPeter Brune } 22523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2253e30e807fSPeter Brune } 2254e30e807fSPeter Brune 2255e30e807fSPeter Brune /*@C 225673ff1848SBarry Smith DMCreateDomainDecompositionScatters - Returns scatters to the subdomain vectors from the global vector for subdomains created with 225773ff1848SBarry Smith `DMCreateDomainDecomposition()` 2258e30e807fSPeter Brune 225920f4b53cSBarry Smith Not Collective 2260e30e807fSPeter Brune 2261e30e807fSPeter Brune Input Parameters: 2262bb7acecfSBarry Smith + dm - the `DM` object 226373ff1848SBarry Smith . n - the number of subdomains 2264e30e807fSPeter Brune - subdms - the local subdomains 2265e30e807fSPeter Brune 2266e30e807fSPeter Brune Output Parameters: 22676b867d5aSJose E. Roman + iscat - scatter from global vector to nonoverlapping global vector entries on subdomain 2268e30e807fSPeter Brune . oscat - scatter from global vector to overlapping global vector entries on subdomain 2269e30e807fSPeter Brune - gscat - scatter from global vector to local vector on subdomain (fills in ghosts) 2270e30e807fSPeter Brune 227120f4b53cSBarry Smith Level: developer 227220f4b53cSBarry Smith 2273bb7acecfSBarry Smith Note: 2274bb7acecfSBarry Smith This is an alternative to the iis and ois arguments in `DMCreateDomainDecomposition()` that allow for the solution 2275e30e807fSPeter Brune of general nonlinear problems with overlapping subdomain methods. While merely having index sets that enable subsets 2276e30e807fSPeter Brune of the residual equations to be created is fine for linear problems, nonlinear problems require local assembly of 2277e30e807fSPeter Brune solution and residual data. 2278e30e807fSPeter Brune 227973ff1848SBarry Smith Developer Note: 2280a4e35b19SJacob Faibussowitsch Can the subdms input be anything or are they exactly the `DM` obtained from 2281a4e35b19SJacob Faibussowitsch `DMCreateDomainDecomposition()`? 2282bb7acecfSBarry Smith 22831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 2284e30e807fSPeter Brune @*/ 22855d83a8b1SBarry Smith PetscErrorCode DMCreateDomainDecompositionScatters(DM dm, PetscInt n, DM *subdms, VecScatter *iscat[], VecScatter *oscat[], VecScatter *gscat[]) 2286d71ae5a4SJacob Faibussowitsch { 2287e30e807fSPeter Brune PetscFunctionBegin; 2288e30e807fSPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 22894f572ea9SToby Isaac PetscAssertPointer(subdms, 3); 2290dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createddscatters, n, subdms, iscat, oscat, gscat); 22913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2292e7c4fc90SDmitry Karpeev } 2293e7c4fc90SDmitry Karpeev 229447c6ae99SBarry Smith /*@ 2295bb7acecfSBarry Smith DMRefine - Refines a `DM` object using a standard nonadaptive refinement of the underlying mesh 229647c6ae99SBarry Smith 229720f4b53cSBarry Smith Collective 229847c6ae99SBarry Smith 2299d8d19677SJose E. Roman Input Parameters: 2300bb7acecfSBarry Smith + dm - the `DM` object 2301bb7acecfSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`) 230247c6ae99SBarry Smith 230347c6ae99SBarry Smith Output Parameter: 230420f4b53cSBarry Smith . dmf - the refined `DM`, or `NULL` 2305ae0a1c52SMatthew G Knepley 230620f4b53cSBarry Smith Options Database Key: 2307412e9a14SMatthew G. Knepley . -dm_plex_cell_refiner <strategy> - chooses the refinement strategy, e.g. regular, tohex 2308412e9a14SMatthew G. Knepley 230947c6ae99SBarry Smith Level: developer 231047c6ae99SBarry Smith 231120f4b53cSBarry Smith Note: 231220f4b53cSBarry Smith If no refinement was done, the return value is `NULL` 231320f4b53cSBarry Smith 231473ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`, 231573ff1848SBarry Smith `DMRefineHookAdd()`, `DMRefineHookRemove()` 231647c6ae99SBarry Smith @*/ 2317d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefine(DM dm, MPI_Comm comm, DM *dmf) 2318d71ae5a4SJacob Faibussowitsch { 2319c833c3b5SJed Brown DMRefineHookLink link; 232047c6ae99SBarry Smith 232147c6ae99SBarry Smith PetscFunctionBegin; 2322732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 23239566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Refine, dm, 0, 0, 0)); 2324dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, refine, comm, dmf); 23254057135bSMatthew G Knepley if (*dmf) { 232643842a1eSJed Brown (*dmf)->ops->creatematrix = dm->ops->creatematrix; 23278865f1eaSKarl Rupp 23289566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmf)); 23298865f1eaSKarl Rupp 2330644e2e5bSBarry Smith (*dmf)->ctx = dm->ctx; 23310598a293SJed Brown (*dmf)->leveldown = dm->leveldown; 2332656b349aSBarry Smith (*dmf)->levelup = dm->levelup + 1; 23338865f1eaSKarl Rupp 23349566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmf, dm->mattype)); 2335c833c3b5SJed Brown for (link = dm->refinehook; link; link = link->next) { 23361baa6e33SBarry Smith if (link->refinehook) PetscCall((*link->refinehook)(dm, *dmf, link->ctx)); 2337c833c3b5SJed Brown } 2338c833c3b5SJed Brown } 23399566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Refine, dm, 0, 0, 0)); 23403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2341c833c3b5SJed Brown } 2342c833c3b5SJed Brown 2343bb9467b5SJed Brown /*@C 2344c833c3b5SJed Brown DMRefineHookAdd - adds a callback to be run when interpolating a nonlinear problem to a finer grid 2345c833c3b5SJed Brown 234620f4b53cSBarry Smith Logically Collective; No Fortran Support 2347c833c3b5SJed Brown 23484165533cSJose E. Roman Input Parameters: 2349bb7acecfSBarry Smith + coarse - `DM` on which to run a hook when interpolating to a finer level 2350bb7acecfSBarry Smith . refinehook - function to run when setting up the finer level 2351f826b5fcSPierre Jolivet . interphook - function to run to update data on finer levels (once per `SNESSolve()`) 235220f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2353c833c3b5SJed Brown 235420f4b53cSBarry Smith Calling sequence of `refinehook`: 2355bb7acecfSBarry Smith + coarse - coarse level `DM` 2356bb7acecfSBarry Smith . fine - fine level `DM` to interpolate problem to 2357c833c3b5SJed Brown - ctx - optional user-defined function context 2358c833c3b5SJed Brown 235920f4b53cSBarry Smith Calling sequence of `interphook`: 2360bb7acecfSBarry Smith + coarse - coarse level `DM` 2361c833c3b5SJed Brown . interp - matrix interpolating a coarse-level solution to the finer grid 2362bb7acecfSBarry Smith . fine - fine level `DM` to update 2363c833c3b5SJed Brown - ctx - optional user-defined function context 2364c833c3b5SJed Brown 2365c833c3b5SJed Brown Level: advanced 2366c833c3b5SJed Brown 2367c833c3b5SJed Brown Notes: 2368bb7acecfSBarry Smith This function is only needed if auxiliary data that is attached to the `DM`s via, for example, `PetscObjectCompose()`, needs to be 2369bb7acecfSBarry Smith passed to fine grids while grid sequencing. 2370bb7acecfSBarry Smith 2371bb7acecfSBarry Smith The actual interpolation is done when `DMInterpolate()` is called. 2372c833c3b5SJed Brown 2373c833c3b5SJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 2374c833c3b5SJed Brown 23751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2376c833c3b5SJed Brown @*/ 2377a4e35b19SJacob Faibussowitsch PetscErrorCode DMRefineHookAdd(DM coarse, PetscErrorCode (*refinehook)(DM coarse, DM fine, void *ctx), PetscErrorCode (*interphook)(DM coarse, Mat interp, DM fine, void *ctx), void *ctx) 2378d71ae5a4SJacob Faibussowitsch { 2379c833c3b5SJed Brown DMRefineHookLink link, *p; 2380c833c3b5SJed Brown 2381c833c3b5SJed Brown PetscFunctionBegin; 2382c833c3b5SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 23833d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 23843ba16761SJacob Faibussowitsch if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 23853d8e3701SJed Brown } 23869566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2387c833c3b5SJed Brown link->refinehook = refinehook; 2388c833c3b5SJed Brown link->interphook = interphook; 2389c833c3b5SJed Brown link->ctx = ctx; 23900298fd71SBarry Smith link->next = NULL; 2391c833c3b5SJed Brown *p = link; 23923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2393c833c3b5SJed Brown } 2394c833c3b5SJed Brown 23953d8e3701SJed Brown /*@C 2396bb7acecfSBarry Smith DMRefineHookRemove - remove a callback from the list of hooks, that have been set with `DMRefineHookAdd()`, to be run when interpolating 2397bb7acecfSBarry Smith a nonlinear problem to a finer grid 23983d8e3701SJed Brown 239920f4b53cSBarry Smith Logically Collective; No Fortran Support 24003d8e3701SJed Brown 24014165533cSJose E. Roman Input Parameters: 2402bb7acecfSBarry Smith + coarse - the `DM` on which to run a hook when restricting to a coarser level 2403bb7acecfSBarry Smith . refinehook - function to run when setting up a finer level 2404bb7acecfSBarry Smith . interphook - function to run to update data on finer levels 240520f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 24063d8e3701SJed Brown 24073d8e3701SJed Brown Level: advanced 24083d8e3701SJed Brown 2409bb7acecfSBarry Smith Note: 24103d8e3701SJed Brown This function does nothing if the hook is not in the list. 24113d8e3701SJed Brown 24121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `DMCoarsenHookRemove()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 24133d8e3701SJed Brown @*/ 2414d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookRemove(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx) 2415d71ae5a4SJacob Faibussowitsch { 24163d8e3701SJed Brown DMRefineHookLink link, *p; 24173d8e3701SJed Brown 24183d8e3701SJed Brown PetscFunctionBegin; 24193d8e3701SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 24203d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 24213d8e3701SJed Brown if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) { 24223d8e3701SJed Brown link = *p; 24233d8e3701SJed Brown *p = link->next; 24249566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 24253d8e3701SJed Brown break; 24263d8e3701SJed Brown } 24273d8e3701SJed Brown } 24283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24293d8e3701SJed Brown } 24303d8e3701SJed Brown 2431c833c3b5SJed Brown /*@ 2432bb7acecfSBarry Smith DMInterpolate - interpolates user-defined problem data attached to a `DM` to a finer `DM` by running hooks registered by `DMRefineHookAdd()` 2433c833c3b5SJed Brown 2434c833c3b5SJed Brown Collective if any hooks are 2435c833c3b5SJed Brown 24364165533cSJose E. Roman Input Parameters: 2437bb7acecfSBarry Smith + coarse - coarser `DM` to use as a base 2438bb7acecfSBarry Smith . interp - interpolation matrix, apply using `MatInterpolate()` 2439bb7acecfSBarry Smith - fine - finer `DM` to update 2440c833c3b5SJed Brown 2441c833c3b5SJed Brown Level: developer 2442c833c3b5SJed Brown 244373ff1848SBarry Smith Developer Note: 2444bb7acecfSBarry Smith This routine is called `DMInterpolate()` while the hook is called `DMRefineHookAdd()`. It would be better to have an 2445bb7acecfSBarry Smith an API with consistent terminology. 2446bb7acecfSBarry Smith 24471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `MatInterpolate()` 2448c833c3b5SJed Brown @*/ 2449d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolate(DM coarse, Mat interp, DM fine) 2450d71ae5a4SJacob Faibussowitsch { 2451c833c3b5SJed Brown DMRefineHookLink link; 2452c833c3b5SJed Brown 2453c833c3b5SJed Brown PetscFunctionBegin; 2454c833c3b5SJed Brown for (link = fine->refinehook; link; link = link->next) { 24551baa6e33SBarry Smith if (link->interphook) PetscCall((*link->interphook)(coarse, interp, fine, link->ctx)); 24564057135bSMatthew G Knepley } 24573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 245847c6ae99SBarry Smith } 245947c6ae99SBarry Smith 2460eb3f98d2SBarry Smith /*@ 24611f3379b2SToby Isaac DMInterpolateSolution - Interpolates a solution from a coarse mesh to a fine mesh. 24621f3379b2SToby Isaac 246320f4b53cSBarry Smith Collective 24641f3379b2SToby Isaac 24654165533cSJose E. Roman Input Parameters: 2466bb7acecfSBarry Smith + coarse - coarse `DM` 2467bb7acecfSBarry Smith . fine - fine `DM` 2468bb7acecfSBarry Smith . interp - (optional) the matrix computed by `DMCreateInterpolation()`. Implementations may not need this, but if it 2469bb7acecfSBarry Smith is available it can avoid some recomputation. If it is provided, `MatInterpolate()` will be used if 2470bb7acecfSBarry Smith the coarse `DM` does not have a specialized implementation. 24711f3379b2SToby Isaac - coarseSol - solution on the coarse mesh 24721f3379b2SToby Isaac 24734165533cSJose E. Roman Output Parameter: 24741f3379b2SToby Isaac . fineSol - the interpolation of coarseSol to the fine mesh 24751f3379b2SToby Isaac 24761f3379b2SToby Isaac Level: developer 24771f3379b2SToby Isaac 2478bb7acecfSBarry Smith Note: 2479bb7acecfSBarry Smith This function exists because the interpolation of a solution vector between meshes is not always a linear 24801f3379b2SToby Isaac map. For example, if a boundary value problem has an inhomogeneous Dirichlet boundary condition that is compressed 24811f3379b2SToby Isaac out of the solution vector. Or if interpolation is inherently a nonlinear operation, such as a method using 24821f3379b2SToby Isaac slope-limiting reconstruction. 24831f3379b2SToby Isaac 248473ff1848SBarry Smith Developer Note: 2485bb7acecfSBarry Smith This doesn't just interpolate "solutions" so its API name is questionable. 2486bb7acecfSBarry Smith 24871cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMInterpolate()`, `DMCreateInterpolation()` 24881f3379b2SToby Isaac @*/ 2489d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolateSolution(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol) 2490d71ae5a4SJacob Faibussowitsch { 24911f3379b2SToby Isaac PetscErrorCode (*interpsol)(DM, DM, Mat, Vec, Vec) = NULL; 24921f3379b2SToby Isaac 24931f3379b2SToby Isaac PetscFunctionBegin; 24941f3379b2SToby Isaac PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 24951f3379b2SToby Isaac if (interp) PetscValidHeaderSpecific(interp, MAT_CLASSID, 3); 24961f3379b2SToby Isaac PetscValidHeaderSpecific(coarseSol, VEC_CLASSID, 4); 24971f3379b2SToby Isaac PetscValidHeaderSpecific(fineSol, VEC_CLASSID, 5); 24981f3379b2SToby Isaac 24999566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)coarse, "DMInterpolateSolution_C", &interpsol)); 25001f3379b2SToby Isaac if (interpsol) { 25019566063dSJacob Faibussowitsch PetscCall((*interpsol)(coarse, fine, interp, coarseSol, fineSol)); 25021f3379b2SToby Isaac } else if (interp) { 25039566063dSJacob Faibussowitsch PetscCall(MatInterpolate(interp, coarseSol, fineSol)); 250498921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)coarse), PETSC_ERR_SUP, "DM %s does not implement DMInterpolateSolution()", ((PetscObject)coarse)->type_name); 25053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25061f3379b2SToby Isaac } 25071f3379b2SToby Isaac 25081f3379b2SToby Isaac /*@ 2509bb7acecfSBarry Smith DMGetRefineLevel - Gets the number of refinements that have generated this `DM` from some initial `DM`. 2510eb3f98d2SBarry Smith 2511eb3f98d2SBarry Smith Not Collective 2512eb3f98d2SBarry Smith 2513eb3f98d2SBarry Smith Input Parameter: 2514bb7acecfSBarry Smith . dm - the `DM` object 2515eb3f98d2SBarry Smith 2516eb3f98d2SBarry Smith Output Parameter: 2517eb3f98d2SBarry Smith . level - number of refinements 2518eb3f98d2SBarry Smith 2519eb3f98d2SBarry Smith Level: developer 2520eb3f98d2SBarry Smith 2521bb7acecfSBarry Smith Note: 2522bb7acecfSBarry Smith This can be used, by example, to set the number of coarser levels associated with this `DM` for a multigrid solver. 2523bb7acecfSBarry Smith 25241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2525eb3f98d2SBarry Smith @*/ 2526d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRefineLevel(DM dm, PetscInt *level) 2527d71ae5a4SJacob Faibussowitsch { 2528eb3f98d2SBarry Smith PetscFunctionBegin; 2529eb3f98d2SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2530eb3f98d2SBarry Smith *level = dm->levelup; 25313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2532eb3f98d2SBarry Smith } 2533eb3f98d2SBarry Smith 2534fef3a512SBarry Smith /*@ 2535bb7acecfSBarry Smith DMSetRefineLevel - Sets the number of refinements that have generated this `DM`. 2536fef3a512SBarry Smith 2537fef3a512SBarry Smith Not Collective 2538fef3a512SBarry Smith 2539d8d19677SJose E. Roman Input Parameters: 2540bb7acecfSBarry Smith + dm - the `DM` object 2541fef3a512SBarry Smith - level - number of refinements 2542fef3a512SBarry Smith 2543fef3a512SBarry Smith Level: advanced 2544fef3a512SBarry Smith 254595452b02SPatrick Sanan Notes: 2546bb7acecfSBarry Smith This value is used by `PCMG` to determine how many multigrid levels to use 2547fef3a512SBarry Smith 2548bb7acecfSBarry Smith The values are usually set automatically by the process that is causing the refinements of an initial `DM` by calling this routine. 2549bb7acecfSBarry Smith 25501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRefineLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2551fef3a512SBarry Smith @*/ 2552d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRefineLevel(DM dm, PetscInt level) 2553d71ae5a4SJacob Faibussowitsch { 2554fef3a512SBarry Smith PetscFunctionBegin; 2555fef3a512SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2556fef3a512SBarry Smith dm->levelup = level; 25573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2558fef3a512SBarry Smith } 2559fef3a512SBarry Smith 2560d410b0cfSMatthew G. Knepley /*@ 2561bb7acecfSBarry Smith DMExtrude - Extrude a `DM` object from a surface 2562d410b0cfSMatthew G. Knepley 256320f4b53cSBarry Smith Collective 2564d410b0cfSMatthew G. Knepley 2565f1a722f8SMatthew G. Knepley Input Parameters: 2566bb7acecfSBarry Smith + dm - the `DM` object 2567d410b0cfSMatthew G. Knepley - layers - the number of extruded cell layers 2568d410b0cfSMatthew G. Knepley 2569d410b0cfSMatthew G. Knepley Output Parameter: 257020f4b53cSBarry Smith . dme - the extruded `DM`, or `NULL` 2571d410b0cfSMatthew G. Knepley 2572d410b0cfSMatthew G. Knepley Level: developer 2573d410b0cfSMatthew G. Knepley 257420f4b53cSBarry Smith Note: 257520f4b53cSBarry Smith If no extrusion was done, the return value is `NULL` 257620f4b53cSBarry Smith 25771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()` 2578d410b0cfSMatthew G. Knepley @*/ 2579d71ae5a4SJacob Faibussowitsch PetscErrorCode DMExtrude(DM dm, PetscInt layers, DM *dme) 2580d71ae5a4SJacob Faibussowitsch { 2581d410b0cfSMatthew G. Knepley PetscFunctionBegin; 2582d410b0cfSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2583dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, extrude, layers, dme); 2584d410b0cfSMatthew G. Knepley if (*dme) { 2585d410b0cfSMatthew G. Knepley (*dme)->ops->creatematrix = dm->ops->creatematrix; 25869566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dme)); 2587d410b0cfSMatthew G. Knepley (*dme)->ctx = dm->ctx; 25889566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dme, dm->mattype)); 2589d410b0cfSMatthew G. Knepley } 25903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2591d410b0cfSMatthew G. Knepley } 2592d410b0cfSMatthew G. Knepley 2593d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformDM_Internal(DM dm, DM *tdm) 2594d71ae5a4SJacob Faibussowitsch { 2595ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2596ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 25974f572ea9SToby Isaac PetscAssertPointer(tdm, 2); 2598ca3d3a14SMatthew G. Knepley *tdm = dm->transformDM; 25993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2600ca3d3a14SMatthew G. Knepley } 2601ca3d3a14SMatthew G. Knepley 2602d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformVec_Internal(DM dm, Vec *tv) 2603d71ae5a4SJacob Faibussowitsch { 2604ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2605ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26064f572ea9SToby Isaac PetscAssertPointer(tv, 2); 2607ca3d3a14SMatthew G. Knepley *tv = dm->transform; 26083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2609ca3d3a14SMatthew G. Knepley } 2610ca3d3a14SMatthew G. Knepley 2611ca3d3a14SMatthew G. Knepley /*@ 2612bb7acecfSBarry Smith DMHasBasisTransform - Whether the `DM` employs a basis transformation from functions in global vectors to functions in local vectors 2613ca3d3a14SMatthew G. Knepley 2614ca3d3a14SMatthew G. Knepley Input Parameter: 261520f4b53cSBarry Smith . dm - The `DM` 2616ca3d3a14SMatthew G. Knepley 2617ca3d3a14SMatthew G. Knepley Output Parameter: 261820f4b53cSBarry Smith . flg - `PETSC_TRUE` if a basis transformation should be done 2619ca3d3a14SMatthew G. Knepley 2620ca3d3a14SMatthew G. Knepley Level: developer 2621ca3d3a14SMatthew G. Knepley 26221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`, `DMPlexCreateBasisRotation()` 2623ca3d3a14SMatthew G. Knepley @*/ 2624d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasBasisTransform(DM dm, PetscBool *flg) 2625d71ae5a4SJacob Faibussowitsch { 2626ca3d3a14SMatthew G. Knepley Vec tv; 2627ca3d3a14SMatthew G. Knepley 2628ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2629ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26304f572ea9SToby Isaac PetscAssertPointer(flg, 2); 26319566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 2632ca3d3a14SMatthew G. Knepley *flg = tv ? PETSC_TRUE : PETSC_FALSE; 26333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2634ca3d3a14SMatthew G. Knepley } 2635ca3d3a14SMatthew G. Knepley 2636d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConstructBasisTransform_Internal(DM dm) 2637d71ae5a4SJacob Faibussowitsch { 2638ca3d3a14SMatthew G. Knepley PetscSection s, ts; 2639ca3d3a14SMatthew G. Knepley PetscScalar *ta; 2640ca3d3a14SMatthew G. Knepley PetscInt cdim, pStart, pEnd, p, Nf, f, Nc, dof; 2641ca3d3a14SMatthew G. Knepley 2642ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 26439566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 26449566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 26459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 26469566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 26479566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->transformDM)); 26489566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm->transformDM, &ts)); 26499566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(ts, Nf)); 26509566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(ts, pStart, pEnd)); 2651ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26529566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(s, f, &Nc)); 2653ca3d3a14SMatthew G. Knepley /* We could start to label fields by their transformation properties */ 2654ca3d3a14SMatthew G. Knepley if (Nc != cdim) continue; 2655ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 26569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, p, f, &dof)); 2657ca3d3a14SMatthew G. Knepley if (!dof) continue; 26589566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(ts, p, f, PetscSqr(cdim))); 26599566063dSJacob Faibussowitsch PetscCall(PetscSectionAddDof(ts, p, PetscSqr(cdim))); 2660ca3d3a14SMatthew G. Knepley } 2661ca3d3a14SMatthew G. Knepley } 26629566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(ts)); 26639566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(dm->transformDM, &dm->transform)); 26649566063dSJacob Faibussowitsch PetscCall(VecGetArray(dm->transform, &ta)); 2665ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 2666ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26679566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof)); 2668ca3d3a14SMatthew G. Knepley if (dof) { 2669ca3d3a14SMatthew G. Knepley PetscReal x[3] = {0.0, 0.0, 0.0}; 2670ca3d3a14SMatthew G. Knepley PetscScalar *tva; 2671ca3d3a14SMatthew G. Knepley const PetscScalar *A; 2672ca3d3a14SMatthew G. Knepley 2673ca3d3a14SMatthew G. Knepley /* TODO Get quadrature point for this dual basis vector for coordinate */ 26749566063dSJacob Faibussowitsch PetscCall((*dm->transformGetMatrix)(dm, x, PETSC_TRUE, &A, dm->transformCtx)); 26759566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm->transformDM, p, f, ta, (void *)&tva)); 26769566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tva, A, PetscSqr(cdim))); 2677ca3d3a14SMatthew G. Knepley } 2678ca3d3a14SMatthew G. Knepley } 2679ca3d3a14SMatthew G. Knepley } 26809566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(dm->transform, &ta)); 26813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2682ca3d3a14SMatthew G. Knepley } 2683ca3d3a14SMatthew G. Knepley 2684d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyTransform(DM dm, DM newdm) 2685d71ae5a4SJacob Faibussowitsch { 2686ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2687ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2688ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(newdm, DM_CLASSID, 2); 2689ca3d3a14SMatthew G. Knepley newdm->transformCtx = dm->transformCtx; 2690ca3d3a14SMatthew G. Knepley newdm->transformSetUp = dm->transformSetUp; 2691ca3d3a14SMatthew G. Knepley newdm->transformDestroy = NULL; 2692ca3d3a14SMatthew G. Knepley newdm->transformGetMatrix = dm->transformGetMatrix; 26939566063dSJacob Faibussowitsch if (newdm->transformSetUp) PetscCall(DMConstructBasisTransform_Internal(newdm)); 26943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2695ca3d3a14SMatthew G. Knepley } 2696ca3d3a14SMatthew G. Knepley 2697bb9467b5SJed Brown /*@C 2698bb7acecfSBarry Smith DMGlobalToLocalHookAdd - adds a callback to be run when `DMGlobalToLocal()` is called 2699baf369e7SPeter Brune 270020f4b53cSBarry Smith Logically Collective 2701baf369e7SPeter Brune 27024165533cSJose E. Roman Input Parameters: 2703bb7acecfSBarry Smith + dm - the `DM` 2704bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMGlobalToLocalBegin()` 2705bb7acecfSBarry Smith . endhook - function to run after `DMGlobalToLocalEnd()` has completed 270620f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2707baf369e7SPeter Brune 270820f4b53cSBarry Smith Calling sequence of `beginhook`: 2709a4e35b19SJacob Faibussowitsch + dm - global `DM` 2710baf369e7SPeter Brune . g - global vector 2711baf369e7SPeter Brune . mode - mode 2712baf369e7SPeter Brune . l - local vector 2713baf369e7SPeter Brune - ctx - optional user-defined function context 2714baf369e7SPeter Brune 271520f4b53cSBarry Smith Calling sequence of `endhook`: 2716a4e35b19SJacob Faibussowitsch + dm - global `DM` 2717a4e35b19SJacob Faibussowitsch . g - global vector 2718a4e35b19SJacob Faibussowitsch . mode - mode 2719a4e35b19SJacob Faibussowitsch . l - local vector 2720baf369e7SPeter Brune - ctx - optional user-defined function context 2721baf369e7SPeter Brune 2722baf369e7SPeter Brune Level: advanced 2723baf369e7SPeter Brune 2724bb7acecfSBarry Smith Note: 2725bb7acecfSBarry Smith The hook may be used to provide, for example, values that represent boundary conditions in the local vectors that do not exist on the global vector. 2726bb7acecfSBarry Smith 27271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocal()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2728baf369e7SPeter Brune @*/ 2729a4e35b19SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), PetscErrorCode (*endhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), void *ctx) 2730d71ae5a4SJacob Faibussowitsch { 2731baf369e7SPeter Brune DMGlobalToLocalHookLink link, *p; 2732baf369e7SPeter Brune 2733baf369e7SPeter Brune PetscFunctionBegin; 2734baf369e7SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2735baf369e7SPeter Brune for (p = &dm->gtolhook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 27369566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2737baf369e7SPeter Brune link->beginhook = beginhook; 2738baf369e7SPeter Brune link->endhook = endhook; 2739baf369e7SPeter Brune link->ctx = ctx; 27400298fd71SBarry Smith link->next = NULL; 2741baf369e7SPeter Brune *p = link; 27423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2743baf369e7SPeter Brune } 2744baf369e7SPeter Brune 2745d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGlobalToLocalHook_Constraints(DM dm, Vec g, InsertMode mode, Vec l, void *ctx) 2746d71ae5a4SJacob Faibussowitsch { 27474c274da1SToby Isaac Mat cMat; 274879769bd5SJed Brown Vec cVec, cBias; 27494c274da1SToby Isaac PetscSection section, cSec; 27504c274da1SToby Isaac PetscInt pStart, pEnd, p, dof; 27514c274da1SToby Isaac 27524c274da1SToby Isaac PetscFunctionBegin; 2753a4e35b19SJacob Faibussowitsch (void)g; 2754a4e35b19SJacob Faibussowitsch (void)ctx; 27554c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 27569566063dSJacob Faibussowitsch PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, &cBias)); 27574c274da1SToby Isaac if (cMat && (mode == INSERT_VALUES || mode == INSERT_ALL_VALUES || mode == INSERT_BC_VALUES)) { 27585db9a05bSToby Isaac PetscInt nRows; 27595db9a05bSToby Isaac 27609566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 27613ba16761SJacob Faibussowitsch if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS); 27629566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 27639566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 27649566063dSJacob Faibussowitsch PetscCall(MatMult(cMat, l, cVec)); 27659566063dSJacob Faibussowitsch if (cBias) PetscCall(VecAXPY(cVec, 1., cBias)); 27669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 27674c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 27689566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 27694c274da1SToby Isaac if (dof) { 27704c274da1SToby Isaac PetscScalar *vals; 27719566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(cVec, cSec, p, &vals)); 27729566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(l, section, p, vals, INSERT_ALL_VALUES)); 27734c274da1SToby Isaac } 27744c274da1SToby Isaac } 27759566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 27764c274da1SToby Isaac } 27773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27784c274da1SToby Isaac } 27794c274da1SToby Isaac 278047c6ae99SBarry Smith /*@ 278101729b5cSPatrick Sanan DMGlobalToLocal - update local vectors from global vector 278201729b5cSPatrick Sanan 278320f4b53cSBarry Smith Neighbor-wise Collective 278401729b5cSPatrick Sanan 278501729b5cSPatrick Sanan Input Parameters: 2786bb7acecfSBarry Smith + dm - the `DM` object 278701729b5cSPatrick Sanan . g - the global vector 2788bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 278901729b5cSPatrick Sanan - l - the local vector 279001729b5cSPatrick Sanan 279120f4b53cSBarry Smith Level: beginner 279220f4b53cSBarry Smith 279301729b5cSPatrick Sanan Notes: 2794bb7acecfSBarry Smith The communication involved in this update can be overlapped with computation by instead using 2795bb7acecfSBarry Smith `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()`. 2796bb7acecfSBarry Smith 2797bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 279801729b5cSPatrick Sanan 27991cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocalHookAdd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, 280060225df5SJacob Faibussowitsch `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, 2801bb7acecfSBarry Smith `DMGlobalToLocalBegin()` `DMGlobalToLocalEnd()` 280201729b5cSPatrick Sanan @*/ 2803d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocal(DM dm, Vec g, InsertMode mode, Vec l) 2804d71ae5a4SJacob Faibussowitsch { 280501729b5cSPatrick Sanan PetscFunctionBegin; 28069566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, g, mode, l)); 28079566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, g, mode, l)); 28083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 280901729b5cSPatrick Sanan } 281001729b5cSPatrick Sanan 281101729b5cSPatrick Sanan /*@ 281247c6ae99SBarry Smith DMGlobalToLocalBegin - Begins updating local vectors from global vector 281347c6ae99SBarry Smith 281420f4b53cSBarry Smith Neighbor-wise Collective 281547c6ae99SBarry Smith 281647c6ae99SBarry Smith Input Parameters: 2817bb7acecfSBarry Smith + dm - the `DM` object 281847c6ae99SBarry Smith . g - the global vector 2819bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 282047c6ae99SBarry Smith - l - the local vector 282147c6ae99SBarry Smith 282201729b5cSPatrick Sanan Level: intermediate 282347c6ae99SBarry Smith 2824bb7acecfSBarry Smith Notes: 2825bb7acecfSBarry Smith The operation is completed with `DMGlobalToLocalEnd()` 2826bb7acecfSBarry Smith 2827bb7acecfSBarry Smith One can perform local computations between the `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` to overlap communication and computation 2828bb7acecfSBarry Smith 2829bb7acecfSBarry Smith `DMGlobalToLocal()` is a short form of `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` 2830bb7acecfSBarry Smith 2831bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 2832bb7acecfSBarry Smith 283360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()` 283447c6ae99SBarry Smith @*/ 2835d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 2836d71ae5a4SJacob Faibussowitsch { 28377128ae9fSMatthew G Knepley PetscSF sf; 2838baf369e7SPeter Brune DMGlobalToLocalHookLink link; 283947c6ae99SBarry Smith 284047c6ae99SBarry Smith PetscFunctionBegin; 2841171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2842baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 28431baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, g, mode, l, link->ctx)); 2844baf369e7SPeter Brune } 28459566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 28467128ae9fSMatthew G Knepley if (sf) { 2847ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2848ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2849d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 28507128ae9fSMatthew G Knepley 28517a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 28529566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 28539566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 28549566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(sf, MPIU_SCALAR, gmtype, gArray, lmtype, lArray, MPI_REPLACE)); 28559566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 28569566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 28577128ae9fSMatthew G Knepley } else { 2858fa1e479aSStefano Zampini PetscUseTypeMethod(dm, globaltolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 28597128ae9fSMatthew G Knepley } 28603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 286147c6ae99SBarry Smith } 286247c6ae99SBarry Smith 286347c6ae99SBarry Smith /*@ 286447c6ae99SBarry Smith DMGlobalToLocalEnd - Ends updating local vectors from global vector 286547c6ae99SBarry Smith 286620f4b53cSBarry Smith Neighbor-wise Collective 286747c6ae99SBarry Smith 286847c6ae99SBarry Smith Input Parameters: 2869bb7acecfSBarry Smith + dm - the `DM` object 287047c6ae99SBarry Smith . g - the global vector 2871bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 287247c6ae99SBarry Smith - l - the local vector 287347c6ae99SBarry Smith 287401729b5cSPatrick Sanan Level: intermediate 287547c6ae99SBarry Smith 2876bb7acecfSBarry Smith Note: 2877bb7acecfSBarry Smith See `DMGlobalToLocalBegin()` for details. 2878bb7acecfSBarry Smith 287960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()` 288047c6ae99SBarry Smith @*/ 2881d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 2882d71ae5a4SJacob Faibussowitsch { 28837128ae9fSMatthew G Knepley PetscSF sf; 2884ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2885ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2886ca3d3a14SMatthew G. Knepley PetscBool transform; 2887baf369e7SPeter Brune DMGlobalToLocalHookLink link; 2888d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 288947c6ae99SBarry Smith 289047c6ae99SBarry Smith PetscFunctionBegin; 2891171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 28929566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 28939566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 28947128ae9fSMatthew G Knepley if (sf) { 28957a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 28967128ae9fSMatthew G Knepley 28979566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 28989566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 28999566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, gArray, lArray, MPI_REPLACE)); 29009566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 29019566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 29029566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexGlobalToLocalBasis(dm, l)); 29037128ae9fSMatthew G Knepley } else { 2904fa1e479aSStefano Zampini PetscUseTypeMethod(dm, globaltolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 29057128ae9fSMatthew G Knepley } 29069566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalHook_Constraints(dm, g, mode, l, NULL)); 2907baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 29089566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 2909baf369e7SPeter Brune } 29103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 291147c6ae99SBarry Smith } 291247c6ae99SBarry Smith 2913d4d07f1eSToby Isaac /*@C 2914d4d07f1eSToby Isaac DMLocalToGlobalHookAdd - adds a callback to be run when a local to global is called 2915d4d07f1eSToby Isaac 291620f4b53cSBarry Smith Logically Collective 2917d4d07f1eSToby Isaac 29184165533cSJose E. Roman Input Parameters: 2919bb7acecfSBarry Smith + dm - the `DM` 2920bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMLocalToGlobalBegin()` 2921bb7acecfSBarry Smith . endhook - function to run after `DMLocalToGlobalEnd()` has completed 292220f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2923d4d07f1eSToby Isaac 292420f4b53cSBarry Smith Calling sequence of `beginhook`: 2925a4e35b19SJacob Faibussowitsch + global - global `DM` 2926d4d07f1eSToby Isaac . l - local vector 2927d4d07f1eSToby Isaac . mode - mode 2928d4d07f1eSToby Isaac . g - global vector 2929d4d07f1eSToby Isaac - ctx - optional user-defined function context 2930d4d07f1eSToby Isaac 293120f4b53cSBarry Smith Calling sequence of `endhook`: 2932bb7acecfSBarry Smith + global - global `DM` 2933d4d07f1eSToby Isaac . l - local vector 2934d4d07f1eSToby Isaac . mode - mode 2935d4d07f1eSToby Isaac . g - global vector 2936d4d07f1eSToby Isaac - ctx - optional user-defined function context 2937d4d07f1eSToby Isaac 2938d4d07f1eSToby Isaac Level: advanced 2939d4d07f1eSToby Isaac 29401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMRefineHookAdd()`, `DMGlobalToLocalHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2941d4d07f1eSToby Isaac @*/ 2942a4e35b19SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), PetscErrorCode (*endhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), void *ctx) 2943d71ae5a4SJacob Faibussowitsch { 2944d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, *p; 2945d4d07f1eSToby Isaac 2946d4d07f1eSToby Isaac PetscFunctionBegin; 2947d4d07f1eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2948d4d07f1eSToby Isaac for (p = &dm->ltoghook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 29499566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2950d4d07f1eSToby Isaac link->beginhook = beginhook; 2951d4d07f1eSToby Isaac link->endhook = endhook; 2952d4d07f1eSToby Isaac link->ctx = ctx; 2953d4d07f1eSToby Isaac link->next = NULL; 2954d4d07f1eSToby Isaac *p = link; 29553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2956d4d07f1eSToby Isaac } 2957d4d07f1eSToby Isaac 2958d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMLocalToGlobalHook_Constraints(DM dm, Vec l, InsertMode mode, Vec g, void *ctx) 2959d71ae5a4SJacob Faibussowitsch { 29604c274da1SToby Isaac PetscFunctionBegin; 2961a4e35b19SJacob Faibussowitsch (void)g; 2962a4e35b19SJacob Faibussowitsch (void)ctx; 29634c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29642b6b7d09SToby Isaac if (mode == ADD_VALUES || mode == ADD_ALL_VALUES || mode == ADD_BC_VALUES) { 29652b6b7d09SToby Isaac Mat cMat; 29662b6b7d09SToby Isaac Vec cVec; 29675db9a05bSToby Isaac PetscInt nRows; 29682b6b7d09SToby Isaac PetscSection section, cSec; 29692b6b7d09SToby Isaac PetscInt pStart, pEnd, p, dof; 29702b6b7d09SToby Isaac 29712b6b7d09SToby Isaac PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, NULL)); 29722b6b7d09SToby Isaac if (!cMat) PetscFunctionReturn(PETSC_SUCCESS); 29735db9a05bSToby Isaac 29749566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 29753ba16761SJacob Faibussowitsch if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS); 29769566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 29779566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 29789566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 29794c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 29809566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 29814c274da1SToby Isaac if (dof) { 29824c274da1SToby Isaac PetscInt d; 29834c274da1SToby Isaac PetscScalar *vals; 29849566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(l, section, p, &vals)); 29859566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(cVec, cSec, p, vals, mode)); 29864c274da1SToby Isaac /* for this to be the true transpose, we have to zero the values that 29874c274da1SToby Isaac * we just extracted */ 2988ad540459SPierre Jolivet for (d = 0; d < dof; d++) vals[d] = 0.; 29894c274da1SToby Isaac } 29904c274da1SToby Isaac } 29919566063dSJacob Faibussowitsch PetscCall(MatMultTransposeAdd(cMat, cVec, l, l)); 29929566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 29934c274da1SToby Isaac } 29943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29954c274da1SToby Isaac } 299601729b5cSPatrick Sanan /*@ 299701729b5cSPatrick Sanan DMLocalToGlobal - updates global vectors from local vectors 299801729b5cSPatrick Sanan 299920f4b53cSBarry Smith Neighbor-wise Collective 300001729b5cSPatrick Sanan 300101729b5cSPatrick Sanan Input Parameters: 3002bb7acecfSBarry Smith + dm - the `DM` object 300301729b5cSPatrick Sanan . l - the local vector 3004bb7acecfSBarry Smith . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 300501729b5cSPatrick Sanan - g - the global vector 300601729b5cSPatrick Sanan 300720f4b53cSBarry Smith Level: beginner 300820f4b53cSBarry Smith 300901729b5cSPatrick Sanan Notes: 301001729b5cSPatrick Sanan The communication involved in this update can be overlapped with computation by using 3011bb7acecfSBarry Smith `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()`. 301201729b5cSPatrick Sanan 3013bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 3014bb7acecfSBarry Smith 3015bb7acecfSBarry Smith `INSERT_VALUES` is not supported for `DMDA`; in that case simply compute the values directly into a global vector instead of a local one. 3016bb7acecfSBarry Smith 3017bb7acecfSBarry Smith Use `DMLocalToGlobalHookAdd()` to add additional operations that are performed on the data during the update process 301801729b5cSPatrick Sanan 30191cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`, `DMLocalToGlobalHookAdd()`, `DMGlobaToLocallHookAdd()` 302001729b5cSPatrick Sanan @*/ 3021d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobal(DM dm, Vec l, InsertMode mode, Vec g) 3022d71ae5a4SJacob Faibussowitsch { 302301729b5cSPatrick Sanan PetscFunctionBegin; 30249566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, l, mode, g)); 30259566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, l, mode, g)); 30263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 302701729b5cSPatrick Sanan } 30284c274da1SToby Isaac 302947c6ae99SBarry Smith /*@ 303001729b5cSPatrick Sanan DMLocalToGlobalBegin - begins updating global vectors from local vectors 30319a42bb27SBarry Smith 303220f4b53cSBarry Smith Neighbor-wise Collective 30339a42bb27SBarry Smith 30349a42bb27SBarry Smith Input Parameters: 3035bb7acecfSBarry Smith + dm - the `DM` object 3036f6813fd5SJed Brown . l - the local vector 3037aa624791SPierre Jolivet . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 30381eb28f2eSBarry Smith - g - the global vector 30399a42bb27SBarry Smith 304020f4b53cSBarry Smith Level: intermediate 304120f4b53cSBarry Smith 304295452b02SPatrick Sanan Notes: 3043bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 3044bb7acecfSBarry Smith 3045bb7acecfSBarry Smith `INSERT_VALUES is` not supported for `DMDA`, in that case simply compute the values directly into a global vector instead of a local one. 3046bb7acecfSBarry Smith 3047bb7acecfSBarry Smith Use `DMLocalToGlobalEnd()` to complete the communication process. 3048bb7acecfSBarry Smith 3049bb7acecfSBarry Smith `DMLocalToGlobal()` is a short form of `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()` 3050bb7acecfSBarry Smith 3051bb7acecfSBarry Smith `DMLocalToGlobalHookAdd()` may be used to provide additional operations that are performed during the update process. 30529a42bb27SBarry Smith 30531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()` 30549a42bb27SBarry Smith @*/ 3055d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalBegin(DM dm, Vec l, InsertMode mode, Vec g) 3056d71ae5a4SJacob Faibussowitsch { 30577128ae9fSMatthew G Knepley PetscSF sf; 305884330215SMatthew G. Knepley PetscSection s, gs; 3059d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3060ca3d3a14SMatthew G. Knepley Vec tmpl; 3061ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3062ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3063fa88e482SJed Brown PetscBool isInsert, transform, l_inplace = PETSC_FALSE, g_inplace = PETSC_FALSE; 3064d0295fc0SJunchao Zhang PetscMemType lmtype = PETSC_MEMTYPE_HOST, gmtype = PETSC_MEMTYPE_HOST; 30659a42bb27SBarry Smith 30669a42bb27SBarry Smith PetscFunctionBegin; 3067171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3068d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 30691baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, l, mode, g, link->ctx)); 3070d4d07f1eSToby Isaac } 30719566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalHook_Constraints(dm, l, mode, g, NULL)); 30729566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 30739566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 30747128ae9fSMatthew G Knepley switch (mode) { 30757128ae9fSMatthew G Knepley case INSERT_VALUES: 30767128ae9fSMatthew G Knepley case INSERT_ALL_VALUES: 3077d71ae5a4SJacob Faibussowitsch case INSERT_BC_VALUES: 3078d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3079d71ae5a4SJacob Faibussowitsch break; 30807128ae9fSMatthew G Knepley case ADD_VALUES: 30817128ae9fSMatthew G Knepley case ADD_ALL_VALUES: 3082d71ae5a4SJacob Faibussowitsch case ADD_BC_VALUES: 3083d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3084d71ae5a4SJacob Faibussowitsch break; 3085d71ae5a4SJacob Faibussowitsch default: 3086d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 30877128ae9fSMatthew G Knepley } 3088ca3d3a14SMatthew G. Knepley if ((sf && !isInsert) || (s && isInsert)) { 30899566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3090ca3d3a14SMatthew G. Knepley if (transform) { 30919566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 30929566063dSJacob Faibussowitsch PetscCall(VecCopy(l, tmpl)); 30939566063dSJacob Faibussowitsch PetscCall(DMPlexLocalToGlobalBasis(dm, tmpl)); 30949566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3095fa88e482SJed Brown } else if (isInsert) { 30969566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l, &lArray)); 3097fa88e482SJed Brown } else { 30989566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, &lmtype)); 3099fa88e482SJed Brown l_inplace = PETSC_TRUE; 3100ca3d3a14SMatthew G. Knepley } 3101fa88e482SJed Brown if (s && isInsert) { 31029566063dSJacob Faibussowitsch PetscCall(VecGetArray(g, &gArray)); 3103fa88e482SJed Brown } else { 31049566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, &gmtype)); 3105fa88e482SJed Brown g_inplace = PETSC_TRUE; 3106fa88e482SJed Brown } 3107ca3d3a14SMatthew G. Knepley if (sf && !isInsert) { 31089566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(sf, MPIU_SCALAR, lmtype, lArray, gmtype, gArray, MPIU_SUM)); 310984330215SMatthew G. Knepley } else if (s && isInsert) { 311084330215SMatthew G. Knepley PetscInt gStart, pStart, pEnd, p; 311184330215SMatthew G. Knepley 31129566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gs)); 31139566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 31149566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(g, &gStart, NULL)); 311584330215SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 3116b3b16f48SMatthew G. Knepley PetscInt dof, gdof, cdof, gcdof, off, goff, d, e; 311784330215SMatthew G. Knepley 31189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s, p, &dof)); 31199566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(gs, p, &gdof)); 31209566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s, p, &cdof)); 31219566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(gs, p, &gcdof)); 31229566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(s, p, &off)); 31239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(gs, p, &goff)); 3124b3b16f48SMatthew G. Knepley /* Ignore off-process data and points with no global data */ 312503442857SMatthew G. Knepley if (!gdof || goff < 0) continue; 31267a8be351SBarry Smith PetscCheck(dof == gdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 3127b3b16f48SMatthew G. Knepley /* If no constraints are enforced in the global vector */ 3128b3b16f48SMatthew G. Knepley if (!gcdof) { 312984330215SMatthew G. Knepley for (d = 0; d < dof; ++d) gArray[goff - gStart + d] = lArray[off + d]; 3130b3b16f48SMatthew G. Knepley /* If constraints are enforced in the global vector */ 3131b3b16f48SMatthew G. Knepley } else if (cdof == gcdof) { 313284330215SMatthew G. Knepley const PetscInt *cdofs; 313384330215SMatthew G. Knepley PetscInt cind = 0; 313484330215SMatthew G. Knepley 31359566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(s, p, &cdofs)); 3136b3b16f48SMatthew G. Knepley for (d = 0, e = 0; d < dof; ++d) { 31379371c9d4SSatish Balay if ((cind < cdof) && (d == cdofs[cind])) { 31389371c9d4SSatish Balay ++cind; 31399371c9d4SSatish Balay continue; 31409371c9d4SSatish Balay } 3141b3b16f48SMatthew G. Knepley gArray[goff - gStart + e++] = lArray[off + d]; 314284330215SMatthew G. Knepley } 31437a8be351SBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 314484330215SMatthew G. Knepley } 3145ca3d3a14SMatthew G. Knepley } 3146fa88e482SJed Brown if (g_inplace) { 31479566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 3148fa88e482SJed Brown } else { 31499566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(g, &gArray)); 3150fa88e482SJed Brown } 3151ca3d3a14SMatthew G. Knepley if (transform) { 31529566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 31539566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3154fa88e482SJed Brown } else if (l_inplace) { 31559566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3156ca3d3a14SMatthew G. Knepley } else { 31579566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l, &lArray)); 3158ca3d3a14SMatthew G. Knepley } 31597128ae9fSMatthew G Knepley } else { 3160fa1e479aSStefano Zampini PetscUseTypeMethod(dm, localtoglobalbegin, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g); 31617128ae9fSMatthew G Knepley } 31623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31639a42bb27SBarry Smith } 31649a42bb27SBarry Smith 31659a42bb27SBarry Smith /*@ 31669a42bb27SBarry Smith DMLocalToGlobalEnd - updates global vectors from local vectors 316747c6ae99SBarry Smith 316820f4b53cSBarry Smith Neighbor-wise Collective 316947c6ae99SBarry Smith 317047c6ae99SBarry Smith Input Parameters: 3171bb7acecfSBarry Smith + dm - the `DM` object 3172f6813fd5SJed Brown . l - the local vector 3173bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 3174f6813fd5SJed Brown - g - the global vector 317547c6ae99SBarry Smith 317601729b5cSPatrick Sanan Level: intermediate 317747c6ae99SBarry Smith 3178bb7acecfSBarry Smith Note: 3179bb7acecfSBarry Smith See `DMLocalToGlobalBegin()` for full details 3180bb7acecfSBarry Smith 318160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()` 318247c6ae99SBarry Smith @*/ 3183d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalEnd(DM dm, Vec l, InsertMode mode, Vec g) 3184d71ae5a4SJacob Faibussowitsch { 31857128ae9fSMatthew G Knepley PetscSF sf; 318684330215SMatthew G. Knepley PetscSection s; 3187d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3188ca3d3a14SMatthew G. Knepley PetscBool isInsert, transform; 318947c6ae99SBarry Smith 319047c6ae99SBarry Smith PetscFunctionBegin; 3191171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 31929566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 31939566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 31947128ae9fSMatthew G Knepley switch (mode) { 31957128ae9fSMatthew G Knepley case INSERT_VALUES: 3196d71ae5a4SJacob Faibussowitsch case INSERT_ALL_VALUES: 3197d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3198d71ae5a4SJacob Faibussowitsch break; 31997128ae9fSMatthew G Knepley case ADD_VALUES: 3200d71ae5a4SJacob Faibussowitsch case ADD_ALL_VALUES: 3201d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3202d71ae5a4SJacob Faibussowitsch break; 3203d71ae5a4SJacob Faibussowitsch default: 3204d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 32057128ae9fSMatthew G Knepley } 320684330215SMatthew G. Knepley if (sf && !isInsert) { 3207ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3208ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3209ca3d3a14SMatthew G. Knepley Vec tmpl; 321084330215SMatthew G. Knepley 32119566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3212ca3d3a14SMatthew G. Knepley if (transform) { 32139566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 32149566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3215ca3d3a14SMatthew G. Knepley } else { 32169566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, NULL)); 3217ca3d3a14SMatthew G. Knepley } 32189566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, NULL)); 32199566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_SCALAR, lArray, gArray, MPIU_SUM)); 3220ca3d3a14SMatthew G. Knepley if (transform) { 32219566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 32229566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3223ca3d3a14SMatthew G. Knepley } else { 32249566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3225ca3d3a14SMatthew G. Knepley } 32269566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 322784330215SMatthew G. Knepley } else if (s && isInsert) { 32287128ae9fSMatthew G Knepley } else { 3229fa1e479aSStefano Zampini PetscUseTypeMethod(dm, localtoglobalend, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g); 32307128ae9fSMatthew G Knepley } 3231d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 32329566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 3233d4d07f1eSToby Isaac } 32343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 323547c6ae99SBarry Smith } 323647c6ae99SBarry Smith 3237f089877aSRichard Tran Mills /*@ 3238a4e35b19SJacob Faibussowitsch DMLocalToLocalBegin - Begins the process of mapping values from a local vector (that include 3239a4e35b19SJacob Faibussowitsch ghost points that contain irrelevant values) to another local vector where the ghost points 3240a4e35b19SJacob Faibussowitsch in the second are set correctly from values on other MPI ranks. 3241f089877aSRichard Tran Mills 324220f4b53cSBarry Smith Neighbor-wise Collective 3243f089877aSRichard Tran Mills 3244f089877aSRichard Tran Mills Input Parameters: 3245bb7acecfSBarry Smith + dm - the `DM` object 3246bc0a1609SRichard Tran Mills . g - the original local vector 3247bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3248f089877aSRichard Tran Mills 3249bc0a1609SRichard Tran Mills Output Parameter: 3250bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3251f089877aSRichard Tran Mills 3252f089877aSRichard Tran Mills Level: intermediate 3253f089877aSRichard Tran Mills 325473ff1848SBarry Smith Note: 3255a4e35b19SJacob Faibussowitsch Must be followed by `DMLocalToLocalEnd()`. 3256a4e35b19SJacob Faibussowitsch 325760225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3258f089877aSRichard Tran Mills @*/ 3259d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 3260d71ae5a4SJacob Faibussowitsch { 3261f089877aSRichard Tran Mills PetscFunctionBegin; 3262f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32639f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 32649f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 32659f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 32663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3267f089877aSRichard Tran Mills } 3268f089877aSRichard Tran Mills 3269f089877aSRichard Tran Mills /*@ 3270bb7acecfSBarry Smith DMLocalToLocalEnd - Maps from a local vector to another local vector where the ghost 3271bb7acecfSBarry Smith points in the second are set correctly. Must be preceded by `DMLocalToLocalBegin()`. 3272f089877aSRichard Tran Mills 327320f4b53cSBarry Smith Neighbor-wise Collective 3274f089877aSRichard Tran Mills 3275f089877aSRichard Tran Mills Input Parameters: 327660225df5SJacob Faibussowitsch + dm - the `DM` object 3277bc0a1609SRichard Tran Mills . g - the original local vector 3278bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3279f089877aSRichard Tran Mills 3280bc0a1609SRichard Tran Mills Output Parameter: 3281bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3282f089877aSRichard Tran Mills 3283f089877aSRichard Tran Mills Level: intermediate 3284f089877aSRichard Tran Mills 328560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3286f089877aSRichard Tran Mills @*/ 3287d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 3288d71ae5a4SJacob Faibussowitsch { 3289f089877aSRichard Tran Mills PetscFunctionBegin; 3290f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32919f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 32929f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 32939f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 32943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3295f089877aSRichard Tran Mills } 3296f089877aSRichard Tran Mills 329747c6ae99SBarry Smith /*@ 3298bb7acecfSBarry Smith DMCoarsen - Coarsens a `DM` object using a standard, non-adaptive coarsening of the underlying mesh 329947c6ae99SBarry Smith 330020f4b53cSBarry Smith Collective 330147c6ae99SBarry Smith 3302d8d19677SJose E. Roman Input Parameters: 3303bb7acecfSBarry Smith + dm - the `DM` object 330420f4b53cSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`) 330547c6ae99SBarry Smith 330647c6ae99SBarry Smith Output Parameter: 3307bb7acecfSBarry Smith . dmc - the coarsened `DM` 330847c6ae99SBarry Smith 330947c6ae99SBarry Smith Level: developer 331047c6ae99SBarry Smith 331173ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`, 331273ff1848SBarry Smith `DMCoarsenHookAdd()`, `DMCoarsenHookRemove()` 331347c6ae99SBarry Smith @*/ 3314d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsen(DM dm, MPI_Comm comm, DM *dmc) 3315d71ae5a4SJacob Faibussowitsch { 3316b17ce1afSJed Brown DMCoarsenHookLink link; 331747c6ae99SBarry Smith 331847c6ae99SBarry Smith PetscFunctionBegin; 3319171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 33209566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Coarsen, dm, 0, 0, 0)); 3321dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, coarsen, comm, dmc); 3322b9d85ea2SLisandro Dalcin if (*dmc) { 3323a3574896SRichard Tran Mills (*dmc)->bind_below = dm->bind_below; /* Propagate this from parent DM; otherwise -dm_bind_below will be useless for multigrid cases. */ 33249566063dSJacob Faibussowitsch PetscCall(DMSetCoarseDM(dm, *dmc)); 332543842a1eSJed Brown (*dmc)->ops->creatematrix = dm->ops->creatematrix; 33269566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmc)); 3327644e2e5bSBarry Smith (*dmc)->ctx = dm->ctx; 33280598a293SJed Brown (*dmc)->levelup = dm->levelup; 3329656b349aSBarry Smith (*dmc)->leveldown = dm->leveldown + 1; 33309566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmc, dm->mattype)); 3331b17ce1afSJed Brown for (link = dm->coarsenhook; link; link = link->next) { 33329566063dSJacob Faibussowitsch if (link->coarsenhook) PetscCall((*link->coarsenhook)(dm, *dmc, link->ctx)); 3333b17ce1afSJed Brown } 3334b9d85ea2SLisandro Dalcin } 33359566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Coarsen, dm, 0, 0, 0)); 33367a8be351SBarry Smith PetscCheck(*dmc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "NULL coarse mesh produced"); 33373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3338b17ce1afSJed Brown } 3339b17ce1afSJed Brown 3340bb9467b5SJed Brown /*@C 3341b17ce1afSJed Brown DMCoarsenHookAdd - adds a callback to be run when restricting a nonlinear problem to the coarse grid 3342b17ce1afSJed Brown 334320f4b53cSBarry Smith Logically Collective; No Fortran Support 3344b17ce1afSJed Brown 33454165533cSJose E. Roman Input Parameters: 3346bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3347b17ce1afSJed Brown . coarsenhook - function to run when setting up a coarser level 3348bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels (called once per `SNESSolve()`) 334920f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3350b17ce1afSJed Brown 335120f4b53cSBarry Smith Calling sequence of `coarsenhook`: 3352bb7acecfSBarry Smith + fine - fine level `DM` 3353bb7acecfSBarry Smith . coarse - coarse level `DM` to restrict problem to 3354b17ce1afSJed Brown - ctx - optional user-defined function context 3355b17ce1afSJed Brown 335620f4b53cSBarry Smith Calling sequence of `restricthook`: 3357bb7acecfSBarry Smith + fine - fine level `DM` 3358bb7acecfSBarry Smith . mrestrict - matrix restricting a fine-level solution to the coarse grid, usually the transpose of the interpolation 3359c833c3b5SJed Brown . rscale - scaling vector for restriction 3360c833c3b5SJed Brown . inject - matrix restricting by injection 3361b17ce1afSJed Brown . coarse - coarse level DM to update 3362b17ce1afSJed Brown - ctx - optional user-defined function context 3363b17ce1afSJed Brown 3364b17ce1afSJed Brown Level: advanced 3365b17ce1afSJed Brown 3366b17ce1afSJed Brown Notes: 3367bb7acecfSBarry Smith This function is only needed if auxiliary data, attached to the `DM` with `PetscObjectCompose()`, needs to be set up or passed from the fine `DM` to the coarse `DM`. 3368b17ce1afSJed Brown 3369b17ce1afSJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 3370b17ce1afSJed Brown 3371b17ce1afSJed Brown In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3372bb7acecfSBarry Smith extract the finest level information from its context (instead of from the `SNES`). 3373b17ce1afSJed Brown 3374bb7acecfSBarry Smith The hooks are automatically called by `DMRestrict()` 3375bb7acecfSBarry Smith 33761cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3377b17ce1afSJed Brown @*/ 3378a4e35b19SJacob Faibussowitsch PetscErrorCode DMCoarsenHookAdd(DM fine, PetscErrorCode (*coarsenhook)(DM fine, DM coarse, void *ctx), PetscErrorCode (*restricthook)(DM fine, Mat mrestrict, Vec rscale, Mat inject, DM coarse, void *ctx), void *ctx) 3379d71ae5a4SJacob Faibussowitsch { 3380b17ce1afSJed Brown DMCoarsenHookLink link, *p; 3381b17ce1afSJed Brown 3382b17ce1afSJed Brown PetscFunctionBegin; 3383b17ce1afSJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 33841e3d8eccSJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 33853ba16761SJacob Faibussowitsch if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 33861e3d8eccSJed Brown } 33879566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 3388b17ce1afSJed Brown link->coarsenhook = coarsenhook; 3389b17ce1afSJed Brown link->restricthook = restricthook; 3390b17ce1afSJed Brown link->ctx = ctx; 33910298fd71SBarry Smith link->next = NULL; 3392b17ce1afSJed Brown *p = link; 33933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3394b17ce1afSJed Brown } 3395b17ce1afSJed Brown 3396dc822a44SJed Brown /*@C 3397bb7acecfSBarry Smith DMCoarsenHookRemove - remove a callback set with `DMCoarsenHookAdd()` 3398dc822a44SJed Brown 339920f4b53cSBarry Smith Logically Collective; No Fortran Support 3400dc822a44SJed Brown 34014165533cSJose E. Roman Input Parameters: 3402bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3403dc822a44SJed Brown . coarsenhook - function to run when setting up a coarser level 3404bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels 340520f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3406dc822a44SJed Brown 3407dc822a44SJed Brown Level: advanced 3408dc822a44SJed Brown 340973ff1848SBarry Smith Notes: 341073ff1848SBarry Smith This function does nothing if the `coarsenhook` is not in the list. 341173ff1848SBarry Smith 341273ff1848SBarry Smith See `DMCoarsenHookAdd()` for the calling sequence of `coarsenhook` and `restricthook` 3413dc822a44SJed Brown 34141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3415dc822a44SJed Brown @*/ 3416d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookRemove(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx) 3417d71ae5a4SJacob Faibussowitsch { 3418dc822a44SJed Brown DMCoarsenHookLink link, *p; 3419dc822a44SJed Brown 3420dc822a44SJed Brown PetscFunctionBegin; 3421dc822a44SJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 3422dc822a44SJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3423dc822a44SJed Brown if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3424dc822a44SJed Brown link = *p; 3425dc822a44SJed Brown *p = link->next; 34269566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3427dc822a44SJed Brown break; 3428dc822a44SJed Brown } 3429dc822a44SJed Brown } 34303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3431dc822a44SJed Brown } 3432dc822a44SJed Brown 3433b17ce1afSJed Brown /*@ 3434bb7acecfSBarry Smith DMRestrict - restricts user-defined problem data to a coarser `DM` by running hooks registered by `DMCoarsenHookAdd()` 3435b17ce1afSJed Brown 3436b17ce1afSJed Brown Collective if any hooks are 3437b17ce1afSJed Brown 34384165533cSJose E. Roman Input Parameters: 3439bb7acecfSBarry Smith + fine - finer `DM` from which the data is obtained 3440bb7acecfSBarry Smith . restrct - restriction matrix, apply using `MatRestrict()`, usually the transpose of the interpolation 3441e91eccc2SStefano Zampini . rscale - scaling vector for restriction 3442bb7acecfSBarry Smith . inject - injection matrix, also use `MatRestrict()` 344320f4b53cSBarry Smith - coarse - coarser `DM` to update 3444b17ce1afSJed Brown 3445b17ce1afSJed Brown Level: developer 3446b17ce1afSJed Brown 344773ff1848SBarry Smith Developer Note: 3448bb7acecfSBarry Smith Though this routine is called `DMRestrict()` the hooks are added with `DMCoarsenHookAdd()`, a consistent terminology would be better 3449bb7acecfSBarry Smith 34501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMInterpolate()`, `DMRefineHookAdd()` 3451b17ce1afSJed Brown @*/ 3452d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestrict(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse) 3453d71ae5a4SJacob Faibussowitsch { 3454b17ce1afSJed Brown DMCoarsenHookLink link; 3455b17ce1afSJed Brown 3456b17ce1afSJed Brown PetscFunctionBegin; 3457b17ce1afSJed Brown for (link = fine->coarsenhook; link; link = link->next) { 34581baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(fine, restrct, rscale, inject, coarse, link->ctx)); 3459b17ce1afSJed Brown } 34603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 346147c6ae99SBarry Smith } 346247c6ae99SBarry Smith 3463bb9467b5SJed Brown /*@C 346473ff1848SBarry Smith DMSubDomainHookAdd - adds a callback to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()` 34655dbd56e3SPeter Brune 346620f4b53cSBarry Smith Logically Collective; No Fortran Support 34675dbd56e3SPeter Brune 34684165533cSJose E. Roman Input Parameters: 3469bb7acecfSBarry Smith + global - global `DM` 3470bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 34715dbd56e3SPeter Brune . restricthook - function to run to update data on block solve (at the beginning of the block solve) 347220f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 34735dbd56e3SPeter Brune 347420f4b53cSBarry Smith Calling sequence of `ddhook`: 3475bb7acecfSBarry Smith + global - global `DM` 347673ff1848SBarry Smith . block - subdomain `DM` 3477ec4806b8SPeter Brune - ctx - optional user-defined function context 3478ec4806b8SPeter Brune 347920f4b53cSBarry Smith Calling sequence of `restricthook`: 3480bb7acecfSBarry Smith + global - global `DM` 348173ff1848SBarry Smith . out - scatter to the outer (with ghost and overlap points) sub vector 348273ff1848SBarry Smith . in - scatter to sub vector values only owned locally 348373ff1848SBarry Smith . block - subdomain `DM` 34845dbd56e3SPeter Brune - ctx - optional user-defined function context 34855dbd56e3SPeter Brune 34865dbd56e3SPeter Brune Level: advanced 34875dbd56e3SPeter Brune 34885dbd56e3SPeter Brune Notes: 348973ff1848SBarry Smith This function can be used if auxiliary data needs to be set up on subdomain `DM`s. 34905dbd56e3SPeter Brune 34915dbd56e3SPeter Brune If this function is called multiple times, the hooks will be run in the order they are added. 34925dbd56e3SPeter Brune 34935dbd56e3SPeter Brune In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3494bb7acecfSBarry Smith extract the global information from its context (instead of from the `SNES`). 34955dbd56e3SPeter Brune 349673ff1848SBarry Smith Developer Note: 349773ff1848SBarry Smith It is unclear what "block solve" means within the definition of `restricthook` 349873ff1848SBarry Smith 349973ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`, `DMCreateDomainDecomposition()` 35005dbd56e3SPeter Brune @*/ 3501a4e35b19SJacob Faibussowitsch PetscErrorCode DMSubDomainHookAdd(DM global, PetscErrorCode (*ddhook)(DM global, DM block, void *ctx), PetscErrorCode (*restricthook)(DM global, VecScatter out, VecScatter in, DM block, void *ctx), void *ctx) 3502d71ae5a4SJacob Faibussowitsch { 3503be081cd6SPeter Brune DMSubDomainHookLink link, *p; 35045dbd56e3SPeter Brune 35055dbd56e3SPeter Brune PetscFunctionBegin; 35065dbd56e3SPeter Brune PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3507b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 35083ba16761SJacob Faibussowitsch if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 3509b3a6b972SJed Brown } 35109566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 35115dbd56e3SPeter Brune link->restricthook = restricthook; 3512be081cd6SPeter Brune link->ddhook = ddhook; 35135dbd56e3SPeter Brune link->ctx = ctx; 35140298fd71SBarry Smith link->next = NULL; 35155dbd56e3SPeter Brune *p = link; 35163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35175dbd56e3SPeter Brune } 35185dbd56e3SPeter Brune 3519b3a6b972SJed Brown /*@C 352073ff1848SBarry Smith DMSubDomainHookRemove - remove a callback from the list to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()` 3521b3a6b972SJed Brown 352220f4b53cSBarry Smith Logically Collective; No Fortran Support 3523b3a6b972SJed Brown 35244165533cSJose E. Roman Input Parameters: 3525bb7acecfSBarry Smith + global - global `DM` 3526bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 3527b3a6b972SJed Brown . restricthook - function to run to update data on block solve (at the beginning of the block solve) 352820f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3529b3a6b972SJed Brown 3530b3a6b972SJed Brown Level: advanced 3531b3a6b972SJed Brown 353273ff1848SBarry Smith Note: 353373ff1848SBarry Smith See `DMSubDomainHookAdd()` for the calling sequences of `ddhook` and `restricthook` 353473ff1848SBarry Smith 353573ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`, 353673ff1848SBarry Smith `DMCreateDomainDecomposition()` 3537b3a6b972SJed Brown @*/ 3538d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookRemove(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx) 3539d71ae5a4SJacob Faibussowitsch { 3540b3a6b972SJed Brown DMSubDomainHookLink link, *p; 3541b3a6b972SJed Brown 3542b3a6b972SJed Brown PetscFunctionBegin; 3543b3a6b972SJed Brown PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3544b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3545b3a6b972SJed Brown if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3546b3a6b972SJed Brown link = *p; 3547b3a6b972SJed Brown *p = link->next; 35489566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3549b3a6b972SJed Brown break; 3550b3a6b972SJed Brown } 3551b3a6b972SJed Brown } 35523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3553b3a6b972SJed Brown } 3554b3a6b972SJed Brown 35555dbd56e3SPeter Brune /*@ 355673ff1848SBarry Smith DMSubDomainRestrict - restricts user-defined problem data to a subdomain `DM` by running hooks registered by `DMSubDomainHookAdd()` 35575dbd56e3SPeter Brune 35585dbd56e3SPeter Brune Collective if any hooks are 35595dbd56e3SPeter Brune 35604165533cSJose E. Roman Input Parameters: 3561a4e35b19SJacob Faibussowitsch + global - The global `DM` to use as a base 3562a4e35b19SJacob Faibussowitsch . oscatter - The scatter from domain global vector filling subdomain global vector with overlap 3563a4e35b19SJacob Faibussowitsch . gscatter - The scatter from domain global vector filling subdomain local vector with ghosts 3564a4e35b19SJacob Faibussowitsch - subdm - The subdomain `DM` to update 35655dbd56e3SPeter Brune 35665dbd56e3SPeter Brune Level: developer 35675dbd56e3SPeter Brune 356873ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMCreateDomainDecomposition()` 35695dbd56e3SPeter Brune @*/ 3570d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainRestrict(DM global, VecScatter oscatter, VecScatter gscatter, DM subdm) 3571d71ae5a4SJacob Faibussowitsch { 3572be081cd6SPeter Brune DMSubDomainHookLink link; 35735dbd56e3SPeter Brune 35745dbd56e3SPeter Brune PetscFunctionBegin; 3575be081cd6SPeter Brune for (link = global->subdomainhook; link; link = link->next) { 35761baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(global, oscatter, gscatter, subdm, link->ctx)); 35775dbd56e3SPeter Brune } 35783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35795dbd56e3SPeter Brune } 35805dbd56e3SPeter Brune 35815fe1f584SPeter Brune /*@ 3582bb7acecfSBarry Smith DMGetCoarsenLevel - Gets the number of coarsenings that have generated this `DM`. 35835fe1f584SPeter Brune 35845fe1f584SPeter Brune Not Collective 35855fe1f584SPeter Brune 35865fe1f584SPeter Brune Input Parameter: 3587bb7acecfSBarry Smith . dm - the `DM` object 35885fe1f584SPeter Brune 35895fe1f584SPeter Brune Output Parameter: 35906a7d9d85SPeter Brune . level - number of coarsenings 35915fe1f584SPeter Brune 35925fe1f584SPeter Brune Level: developer 35935fe1f584SPeter Brune 35941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMSetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 35955fe1f584SPeter Brune @*/ 3596d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarsenLevel(DM dm, PetscInt *level) 3597d71ae5a4SJacob Faibussowitsch { 35985fe1f584SPeter Brune PetscFunctionBegin; 35995fe1f584SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36004f572ea9SToby Isaac PetscAssertPointer(level, 2); 36015fe1f584SPeter Brune *level = dm->leveldown; 36023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36035fe1f584SPeter Brune } 36045fe1f584SPeter Brune 36059a64c4a8SMatthew G. Knepley /*@ 3606bb7acecfSBarry Smith DMSetCoarsenLevel - Sets the number of coarsenings that have generated this `DM`. 36079a64c4a8SMatthew G. Knepley 360820f4b53cSBarry Smith Collective 36099a64c4a8SMatthew G. Knepley 36109a64c4a8SMatthew G. Knepley Input Parameters: 3611bb7acecfSBarry Smith + dm - the `DM` object 36129a64c4a8SMatthew G. Knepley - level - number of coarsenings 36139a64c4a8SMatthew G. Knepley 36149a64c4a8SMatthew G. Knepley Level: developer 36159a64c4a8SMatthew G. Knepley 3616bb7acecfSBarry Smith Note: 3617bb7acecfSBarry Smith This is rarely used directly, the information is automatically set when a `DM` is created with `DMCoarsen()` 3618bb7acecfSBarry Smith 361942747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 36209a64c4a8SMatthew G. Knepley @*/ 3621d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarsenLevel(DM dm, PetscInt level) 3622d71ae5a4SJacob Faibussowitsch { 36239a64c4a8SMatthew G. Knepley PetscFunctionBegin; 36249a64c4a8SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36259a64c4a8SMatthew G. Knepley dm->leveldown = level; 36263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36279a64c4a8SMatthew G. Knepley } 36289a64c4a8SMatthew G. Knepley 3629cc4c1da9SBarry Smith /*@ 3630bb7acecfSBarry Smith DMRefineHierarchy - Refines a `DM` object, all levels at once 363147c6ae99SBarry Smith 363220f4b53cSBarry Smith Collective 363347c6ae99SBarry Smith 3634d8d19677SJose E. Roman Input Parameters: 3635bb7acecfSBarry Smith + dm - the `DM` object 363647c6ae99SBarry Smith - nlevels - the number of levels of refinement 363747c6ae99SBarry Smith 363847c6ae99SBarry Smith Output Parameter: 3639bb7acecfSBarry Smith . dmf - the refined `DM` hierarchy 364047c6ae99SBarry Smith 364147c6ae99SBarry Smith Level: developer 364247c6ae99SBarry Smith 36431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMCoarsenHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 364447c6ae99SBarry Smith @*/ 3645d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHierarchy(DM dm, PetscInt nlevels, DM dmf[]) 3646d71ae5a4SJacob Faibussowitsch { 364747c6ae99SBarry Smith PetscFunctionBegin; 3648171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36497a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 36503ba16761SJacob Faibussowitsch if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS); 36514f572ea9SToby Isaac PetscAssertPointer(dmf, 3); 3652213acdd3SPierre Jolivet if (dm->ops->refine && !dm->ops->refinehierarchy) { 365347c6ae99SBarry Smith PetscInt i; 365447c6ae99SBarry Smith 36559566063dSJacob Faibussowitsch PetscCall(DMRefine(dm, PetscObjectComm((PetscObject)dm), &dmf[0])); 365648a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMRefine(dmf[i - 1], PetscObjectComm((PetscObject)dm), &dmf[i])); 3657213acdd3SPierre Jolivet } else PetscUseTypeMethod(dm, refinehierarchy, nlevels, dmf); 36583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 365947c6ae99SBarry Smith } 366047c6ae99SBarry Smith 3661cc4c1da9SBarry Smith /*@ 3662bb7acecfSBarry Smith DMCoarsenHierarchy - Coarsens a `DM` object, all levels at once 366347c6ae99SBarry Smith 366420f4b53cSBarry Smith Collective 366547c6ae99SBarry Smith 3666d8d19677SJose E. Roman Input Parameters: 3667bb7acecfSBarry Smith + dm - the `DM` object 366847c6ae99SBarry Smith - nlevels - the number of levels of coarsening 366947c6ae99SBarry Smith 367047c6ae99SBarry Smith Output Parameter: 3671bb7acecfSBarry Smith . dmc - the coarsened `DM` hierarchy 367247c6ae99SBarry Smith 367347c6ae99SBarry Smith Level: developer 367447c6ae99SBarry Smith 36751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMRefineHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 367647c6ae99SBarry Smith @*/ 3677d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHierarchy(DM dm, PetscInt nlevels, DM dmc[]) 3678d71ae5a4SJacob Faibussowitsch { 367947c6ae99SBarry Smith PetscFunctionBegin; 3680171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36817a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 36823ba16761SJacob Faibussowitsch if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS); 36834f572ea9SToby Isaac PetscAssertPointer(dmc, 3); 3684213acdd3SPierre Jolivet if (dm->ops->coarsen && !dm->ops->coarsenhierarchy) { 368547c6ae99SBarry Smith PetscInt i; 368647c6ae99SBarry Smith 36879566063dSJacob Faibussowitsch PetscCall(DMCoarsen(dm, PetscObjectComm((PetscObject)dm), &dmc[0])); 368848a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMCoarsen(dmc[i - 1], PetscObjectComm((PetscObject)dm), &dmc[i])); 3689213acdd3SPierre Jolivet } else PetscUseTypeMethod(dm, coarsenhierarchy, nlevels, dmc); 36903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 369147c6ae99SBarry Smith } 369247c6ae99SBarry Smith 36931a266240SBarry Smith /*@C 3694bb7acecfSBarry Smith DMSetApplicationContextDestroy - Sets a user function that will be called to destroy the application context when the `DM` is destroyed 36951a266240SBarry Smith 3696bb7acecfSBarry Smith Logically Collective if the function is collective 36971a266240SBarry Smith 36981a266240SBarry Smith Input Parameters: 3699bb7acecfSBarry Smith + dm - the `DM` object 370049abdd8aSBarry Smith - destroy - the destroy function, see `PetscCtxDestroyFn` for the calling sequence 37011a266240SBarry Smith 37021a266240SBarry Smith Level: intermediate 37031a266240SBarry Smith 370449abdd8aSBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, 370549abdd8aSBarry Smith `DMGetApplicationContext()`, `PetscCtxDestroyFn` 3706f07f9ceaSJed Brown @*/ 370749abdd8aSBarry Smith PetscErrorCode DMSetApplicationContextDestroy(DM dm, PetscCtxDestroyFn *destroy) 3708d71ae5a4SJacob Faibussowitsch { 37091a266240SBarry Smith PetscFunctionBegin; 3710171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37111a266240SBarry Smith dm->ctxdestroy = destroy; 37123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 37131a266240SBarry Smith } 37141a266240SBarry Smith 3715b07ff414SBarry Smith /*@ 3716bb7acecfSBarry Smith DMSetApplicationContext - Set a user context into a `DM` object 371747c6ae99SBarry Smith 371847c6ae99SBarry Smith Not Collective 371947c6ae99SBarry Smith 372047c6ae99SBarry Smith Input Parameters: 3721bb7acecfSBarry Smith + dm - the `DM` object 372247c6ae99SBarry Smith - ctx - the user context 372347c6ae99SBarry Smith 372447c6ae99SBarry Smith Level: intermediate 372547c6ae99SBarry Smith 3726e33b3f0fSStefano Zampini Notes: 372735cb6cd3SPierre Jolivet A user context is a way to pass problem specific information that is accessible whenever the `DM` is available 3728e33b3f0fSStefano Zampini In a multilevel solver, the user context is shared by all the `DM` in the hierarchy; it is thus not advisable 3729e33b3f0fSStefano Zampini to store objects that represent discretized quantities inside the context. 3730bb7acecfSBarry Smith 373160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 373247c6ae99SBarry Smith @*/ 3733d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContext(DM dm, void *ctx) 3734d71ae5a4SJacob Faibussowitsch { 373547c6ae99SBarry Smith PetscFunctionBegin; 3736171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 373747c6ae99SBarry Smith dm->ctx = ctx; 37383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 373947c6ae99SBarry Smith } 374047c6ae99SBarry Smith 374147c6ae99SBarry Smith /*@ 3742bb7acecfSBarry Smith DMGetApplicationContext - Gets a user context from a `DM` object 374347c6ae99SBarry Smith 374447c6ae99SBarry Smith Not Collective 374547c6ae99SBarry Smith 374647c6ae99SBarry Smith Input Parameter: 3747bb7acecfSBarry Smith . dm - the `DM` object 374847c6ae99SBarry Smith 374947c6ae99SBarry Smith Output Parameter: 375047c6ae99SBarry Smith . ctx - the user context 375147c6ae99SBarry Smith 375247c6ae99SBarry Smith Level: intermediate 375347c6ae99SBarry Smith 3754bb7acecfSBarry Smith Note: 375535cb6cd3SPierre Jolivet A user context is a way to pass problem specific information that is accessible whenever the `DM` is available 3756bb7acecfSBarry Smith 375742747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 375847c6ae99SBarry Smith @*/ 3759d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetApplicationContext(DM dm, void *ctx) 3760d71ae5a4SJacob Faibussowitsch { 376147c6ae99SBarry Smith PetscFunctionBegin; 3762171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37631b2093e4SBarry Smith *(void **)ctx = dm->ctx; 37643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 376547c6ae99SBarry Smith } 376647c6ae99SBarry Smith 376708da532bSDmitry Karpeev /*@C 3768bb7acecfSBarry Smith DMSetVariableBounds - sets a function to compute the lower and upper bound vectors for `SNESVI`. 376908da532bSDmitry Karpeev 377020f4b53cSBarry Smith Logically Collective 377108da532bSDmitry Karpeev 3772d8d19677SJose E. Roman Input Parameters: 377308da532bSDmitry Karpeev + dm - the DM object 377420f4b53cSBarry Smith - f - the function that computes variable bounds used by SNESVI (use `NULL` to cancel a previous function that was set) 377508da532bSDmitry Karpeev 377608da532bSDmitry Karpeev Level: intermediate 377708da532bSDmitry Karpeev 37781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`, 3779db781477SPatrick Sanan `DMSetJacobian()` 378008da532bSDmitry Karpeev @*/ 3781d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVariableBounds(DM dm, PetscErrorCode (*f)(DM, Vec, Vec)) 3782d71ae5a4SJacob Faibussowitsch { 378308da532bSDmitry Karpeev PetscFunctionBegin; 37845a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 378508da532bSDmitry Karpeev dm->ops->computevariablebounds = f; 37863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 378708da532bSDmitry Karpeev } 378808da532bSDmitry Karpeev 378908da532bSDmitry Karpeev /*@ 3790bb7acecfSBarry Smith DMHasVariableBounds - does the `DM` object have a variable bounds function? 379108da532bSDmitry Karpeev 379208da532bSDmitry Karpeev Not Collective 379308da532bSDmitry Karpeev 379408da532bSDmitry Karpeev Input Parameter: 3795bb7acecfSBarry Smith . dm - the `DM` object to destroy 379608da532bSDmitry Karpeev 379708da532bSDmitry Karpeev Output Parameter: 3798bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the variable bounds function exists 379908da532bSDmitry Karpeev 380008da532bSDmitry Karpeev Level: developer 380108da532bSDmitry Karpeev 38021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 380308da532bSDmitry Karpeev @*/ 3804d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasVariableBounds(DM dm, PetscBool *flg) 3805d71ae5a4SJacob Faibussowitsch { 380608da532bSDmitry Karpeev PetscFunctionBegin; 38075a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38084f572ea9SToby Isaac PetscAssertPointer(flg, 2); 380908da532bSDmitry Karpeev *flg = (dm->ops->computevariablebounds) ? PETSC_TRUE : PETSC_FALSE; 38103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 381108da532bSDmitry Karpeev } 381208da532bSDmitry Karpeev 3813cc4c1da9SBarry Smith /*@ 3814bb7acecfSBarry Smith DMComputeVariableBounds - compute variable bounds used by `SNESVI`. 381508da532bSDmitry Karpeev 381620f4b53cSBarry Smith Logically Collective 381708da532bSDmitry Karpeev 3818f899ff85SJose E. Roman Input Parameter: 3819bb7acecfSBarry Smith . dm - the `DM` object 382008da532bSDmitry Karpeev 382160225df5SJacob Faibussowitsch Output Parameters: 382208da532bSDmitry Karpeev + xl - lower bound 382308da532bSDmitry Karpeev - xu - upper bound 382408da532bSDmitry Karpeev 3825907376e6SBarry Smith Level: advanced 3826907376e6SBarry Smith 382720f4b53cSBarry Smith Note: 382895452b02SPatrick Sanan This is generally not called by users. It calls the function provided by the user with DMSetVariableBounds() 382908da532bSDmitry Karpeev 38301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 383108da532bSDmitry Karpeev @*/ 3832d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeVariableBounds(DM dm, Vec xl, Vec xu) 3833d71ae5a4SJacob Faibussowitsch { 383408da532bSDmitry Karpeev PetscFunctionBegin; 38355a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 383608da532bSDmitry Karpeev PetscValidHeaderSpecific(xl, VEC_CLASSID, 2); 38375a84ad33SLisandro Dalcin PetscValidHeaderSpecific(xu, VEC_CLASSID, 3); 3838dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, computevariablebounds, xl, xu); 38393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 384008da532bSDmitry Karpeev } 384108da532bSDmitry Karpeev 3842b0ae01b7SPeter Brune /*@ 3843bb7acecfSBarry Smith DMHasColoring - does the `DM` object have a method of providing a coloring? 3844b0ae01b7SPeter Brune 3845b0ae01b7SPeter Brune Not Collective 3846b0ae01b7SPeter Brune 3847b0ae01b7SPeter Brune Input Parameter: 3848b0ae01b7SPeter Brune . dm - the DM object 3849b0ae01b7SPeter Brune 3850b0ae01b7SPeter Brune Output Parameter: 3851bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateColoring()`. 3852b0ae01b7SPeter Brune 3853b0ae01b7SPeter Brune Level: developer 3854b0ae01b7SPeter Brune 38551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateColoring()` 3856b0ae01b7SPeter Brune @*/ 3857d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasColoring(DM dm, PetscBool *flg) 3858d71ae5a4SJacob Faibussowitsch { 3859b0ae01b7SPeter Brune PetscFunctionBegin; 38605a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38614f572ea9SToby Isaac PetscAssertPointer(flg, 2); 3862b0ae01b7SPeter Brune *flg = (dm->ops->getcoloring) ? PETSC_TRUE : PETSC_FALSE; 38633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3864b0ae01b7SPeter Brune } 3865b0ae01b7SPeter Brune 38663ad4599aSBarry Smith /*@ 3867bb7acecfSBarry Smith DMHasCreateRestriction - does the `DM` object have a method of providing a restriction? 38683ad4599aSBarry Smith 38693ad4599aSBarry Smith Not Collective 38703ad4599aSBarry Smith 38713ad4599aSBarry Smith Input Parameter: 3872bb7acecfSBarry Smith . dm - the `DM` object 38733ad4599aSBarry Smith 38743ad4599aSBarry Smith Output Parameter: 3875bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateRestriction()`. 38763ad4599aSBarry Smith 38773ad4599aSBarry Smith Level: developer 38783ad4599aSBarry Smith 38791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateRestriction()`, `DMHasCreateInterpolation()`, `DMHasCreateInjection()` 38803ad4599aSBarry Smith @*/ 3881d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateRestriction(DM dm, PetscBool *flg) 3882d71ae5a4SJacob Faibussowitsch { 38833ad4599aSBarry Smith PetscFunctionBegin; 38845a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38854f572ea9SToby Isaac PetscAssertPointer(flg, 2); 38863ad4599aSBarry Smith *flg = (dm->ops->createrestriction) ? PETSC_TRUE : PETSC_FALSE; 38873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 38883ad4599aSBarry Smith } 38893ad4599aSBarry Smith 3890a7058e45SLawrence Mitchell /*@ 3891bb7acecfSBarry Smith DMHasCreateInjection - does the `DM` object have a method of providing an injection? 3892a7058e45SLawrence Mitchell 3893a7058e45SLawrence Mitchell Not Collective 3894a7058e45SLawrence Mitchell 3895a7058e45SLawrence Mitchell Input Parameter: 3896bb7acecfSBarry Smith . dm - the `DM` object 3897a7058e45SLawrence Mitchell 3898a7058e45SLawrence Mitchell Output Parameter: 3899bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateInjection()`. 3900a7058e45SLawrence Mitchell 3901a7058e45SLawrence Mitchell Level: developer 3902a7058e45SLawrence Mitchell 39031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateInjection()`, `DMHasCreateRestriction()`, `DMHasCreateInterpolation()` 3904a7058e45SLawrence Mitchell @*/ 3905d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateInjection(DM dm, PetscBool *flg) 3906d71ae5a4SJacob Faibussowitsch { 3907a7058e45SLawrence Mitchell PetscFunctionBegin; 39085a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39094f572ea9SToby Isaac PetscAssertPointer(flg, 2); 3910dbbe0bcdSBarry Smith if (dm->ops->hascreateinjection) PetscUseTypeMethod(dm, hascreateinjection, flg); 3911ad540459SPierre Jolivet else *flg = (dm->ops->createinjection) ? PETSC_TRUE : PETSC_FALSE; 39123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3913a7058e45SLawrence Mitchell } 3914a7058e45SLawrence Mitchell 39150298fd71SBarry Smith PetscFunctionList DMList = NULL; 3916264ace61SBarry Smith PetscBool DMRegisterAllCalled = PETSC_FALSE; 3917264ace61SBarry Smith 3918cc4c1da9SBarry Smith /*@ 3919bb7acecfSBarry Smith DMSetType - Builds a `DM`, for a particular `DM` implementation. 3920264ace61SBarry Smith 392120f4b53cSBarry Smith Collective 3922264ace61SBarry Smith 3923264ace61SBarry Smith Input Parameters: 3924bb7acecfSBarry Smith + dm - The `DM` object 3925bb7acecfSBarry Smith - method - The name of the `DMType`, for example `DMDA`, `DMPLEX` 3926264ace61SBarry Smith 3927264ace61SBarry Smith Options Database Key: 3928bb7acecfSBarry Smith . -dm_type <type> - Sets the `DM` type; use -help for a list of available types 3929264ace61SBarry Smith 3930264ace61SBarry Smith Level: intermediate 3931264ace61SBarry Smith 3932bb7acecfSBarry Smith Note: 39330462cc06SPierre Jolivet Of the `DM` is constructed by directly calling a function to construct a particular `DM`, for example, `DMDACreate2d()` or `DMPlexCreateBoxMesh()` 3934bb7acecfSBarry Smith 39351cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMGetType()`, `DMCreate()`, `DMDACreate2d()` 3936264ace61SBarry Smith @*/ 3937d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetType(DM dm, DMType method) 3938d71ae5a4SJacob Faibussowitsch { 3939264ace61SBarry Smith PetscErrorCode (*r)(DM); 3940264ace61SBarry Smith PetscBool match; 3941264ace61SBarry Smith 3942264ace61SBarry Smith PetscFunctionBegin; 3943264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39449566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, method, &match)); 39453ba16761SJacob Faibussowitsch if (match) PetscFunctionReturn(PETSC_SUCCESS); 3946264ace61SBarry Smith 39479566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 39489566063dSJacob Faibussowitsch PetscCall(PetscFunctionListFind(DMList, method, &r)); 39497a8be351SBarry Smith PetscCheck(r, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown DM type: %s", method); 3950264ace61SBarry Smith 3951dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, destroy); 39529566063dSJacob Faibussowitsch PetscCall(PetscMemzero(dm->ops, sizeof(*dm->ops))); 39539566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)dm, method)); 39549566063dSJacob Faibussowitsch PetscCall((*r)(dm)); 39553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3956264ace61SBarry Smith } 3957264ace61SBarry Smith 3958cc4c1da9SBarry Smith /*@ 3959bb7acecfSBarry Smith DMGetType - Gets the `DM` type name (as a string) from the `DM`. 3960264ace61SBarry Smith 3961264ace61SBarry Smith Not Collective 3962264ace61SBarry Smith 3963264ace61SBarry Smith Input Parameter: 3964bb7acecfSBarry Smith . dm - The `DM` 3965264ace61SBarry Smith 3966264ace61SBarry Smith Output Parameter: 3967bb7acecfSBarry Smith . type - The `DMType` name 3968264ace61SBarry Smith 3969264ace61SBarry Smith Level: intermediate 3970264ace61SBarry Smith 39711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMSetType()`, `DMCreate()` 3972264ace61SBarry Smith @*/ 3973d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetType(DM dm, DMType *type) 3974d71ae5a4SJacob Faibussowitsch { 3975264ace61SBarry Smith PetscFunctionBegin; 3976264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39774f572ea9SToby Isaac PetscAssertPointer(type, 2); 39789566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 3979264ace61SBarry Smith *type = ((PetscObject)dm)->type_name; 39803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3981264ace61SBarry Smith } 3982264ace61SBarry Smith 39835d83a8b1SBarry Smith /*@ 3984bb7acecfSBarry Smith DMConvert - Converts a `DM` to another `DM`, either of the same or different type. 398567a56275SMatthew G Knepley 398620f4b53cSBarry Smith Collective 398767a56275SMatthew G Knepley 398867a56275SMatthew G Knepley Input Parameters: 3989bb7acecfSBarry Smith + dm - the `DM` 3990bb7acecfSBarry Smith - newtype - new `DM` type (use "same" for the same type) 399167a56275SMatthew G Knepley 399267a56275SMatthew G Knepley Output Parameter: 3993bb7acecfSBarry Smith . M - pointer to new `DM` 399467a56275SMatthew G Knepley 399520f4b53cSBarry Smith Level: intermediate 399620f4b53cSBarry Smith 399773ff1848SBarry Smith Note: 3998bb7acecfSBarry Smith Cannot be used to convert a sequential `DM` to a parallel or a parallel to sequential, 3999bb7acecfSBarry Smith the MPI communicator of the generated `DM` is always the same as the communicator 4000bb7acecfSBarry Smith of the input `DM`. 400167a56275SMatthew G Knepley 40021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMCreate()`, `DMClone()` 400367a56275SMatthew G Knepley @*/ 4004d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConvert(DM dm, DMType newtype, DM *M) 4005d71ae5a4SJacob Faibussowitsch { 400667a56275SMatthew G Knepley DM B; 400767a56275SMatthew G Knepley char convname[256]; 4008c067b6caSMatthew G. Knepley PetscBool sametype /*, issame */; 400967a56275SMatthew G Knepley 401067a56275SMatthew G Knepley PetscFunctionBegin; 401167a56275SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 401267a56275SMatthew G Knepley PetscValidType(dm, 1); 40134f572ea9SToby Isaac PetscAssertPointer(M, 3); 40149566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, newtype, &sametype)); 40159566063dSJacob Faibussowitsch /* PetscCall(PetscStrcmp(newtype, "same", &issame)); */ 4016c067b6caSMatthew G. Knepley if (sametype) { 4017c067b6caSMatthew G. Knepley *M = dm; 40189566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 40193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4020c067b6caSMatthew G. Knepley } else { 40210298fd71SBarry Smith PetscErrorCode (*conv)(DM, DMType, DM *) = NULL; 402267a56275SMatthew G Knepley 402367a56275SMatthew G Knepley /* 402467a56275SMatthew G Knepley Order of precedence: 402567a56275SMatthew G Knepley 1) See if a specialized converter is known to the current DM. 402667a56275SMatthew G Knepley 2) See if a specialized converter is known to the desired DM class. 402767a56275SMatthew G Knepley 3) See if a good general converter is registered for the desired class 402867a56275SMatthew G Knepley 4) See if a good general converter is known for the current matrix. 402967a56275SMatthew G Knepley 5) Use a really basic converter. 403067a56275SMatthew G Knepley */ 403167a56275SMatthew G Knepley 403267a56275SMatthew G Knepley /* 1) See if a specialized converter is known to the current DM and the desired class */ 40339566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 40349566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 40359566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 40369566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 40379566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 40389566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)dm, convname, &conv)); 403967a56275SMatthew G Knepley if (conv) goto foundconv; 404067a56275SMatthew G Knepley 404167a56275SMatthew G Knepley /* 2) See if a specialized converter is known to the desired DM class. */ 40429566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &B)); 40439566063dSJacob Faibussowitsch PetscCall(DMSetType(B, newtype)); 40449566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 40459566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 40469566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 40479566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 40489566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 40499566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)B, convname, &conv)); 405067a56275SMatthew G Knepley if (conv) { 40519566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 405267a56275SMatthew G Knepley goto foundconv; 405367a56275SMatthew G Knepley } 405467a56275SMatthew G Knepley 405567a56275SMatthew G Knepley #if 0 405667a56275SMatthew G Knepley /* 3) See if a good general converter is registered for the desired class */ 405767a56275SMatthew G Knepley conv = B->ops->convertfrom; 40589566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 405967a56275SMatthew G Knepley if (conv) goto foundconv; 406067a56275SMatthew G Knepley 406167a56275SMatthew G Knepley /* 4) See if a good general converter is known for the current matrix */ 406267a56275SMatthew G Knepley if (dm->ops->convert) { 406367a56275SMatthew G Knepley conv = dm->ops->convert; 406467a56275SMatthew G Knepley } 406567a56275SMatthew G Knepley if (conv) goto foundconv; 406667a56275SMatthew G Knepley #endif 406767a56275SMatthew G Knepley 406867a56275SMatthew G Knepley /* 5) Use a really basic converter. */ 406998921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No conversion possible between DM types %s and %s", ((PetscObject)dm)->type_name, newtype); 407067a56275SMatthew G Knepley 407167a56275SMatthew G Knepley foundconv: 40729566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Convert, dm, 0, 0, 0)); 40739566063dSJacob Faibussowitsch PetscCall((*conv)(dm, newtype, M)); 407412fa691eSMatthew G. Knepley /* Things that are independent of DM type: We should consult DMClone() here */ 407590b157c4SStefano Zampini { 40764fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 40776858538eSMatthew G. Knepley 40784fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 40794fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*M, maxCell, Lstart, L)); 4080c8a6034eSMark (*M)->prealloc_only = dm->prealloc_only; 40819566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->vectype)); 40829566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*M)->vectype)); 40839566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->mattype)); 40849566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*M)->mattype)); 408512fa691eSMatthew G. Knepley } 40869566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Convert, dm, 0, 0, 0)); 408767a56275SMatthew G Knepley } 40889566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)*M)); 40893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 409067a56275SMatthew G Knepley } 4091264ace61SBarry Smith 4092264ace61SBarry Smith /*--------------------------------------------------------------------------------------------------------------------*/ 4093264ace61SBarry Smith 4094264ace61SBarry Smith /*@C 4095bb7acecfSBarry Smith DMRegister - Adds a new `DM` type implementation 40961c84c290SBarry Smith 4097cc4c1da9SBarry Smith Not Collective, No Fortran Support 40981c84c290SBarry Smith 40991c84c290SBarry Smith Input Parameters: 410020f4b53cSBarry Smith + sname - The name of a new user-defined creation routine 410120f4b53cSBarry Smith - function - The creation routine itself 410220f4b53cSBarry Smith 410320f4b53cSBarry Smith Level: advanced 41041c84c290SBarry Smith 410573ff1848SBarry Smith Note: 410620f4b53cSBarry Smith `DMRegister()` may be called multiple times to add several user-defined `DM`s 41071c84c290SBarry Smith 410860225df5SJacob Faibussowitsch Example Usage: 41091c84c290SBarry Smith .vb 4110bdf89e91SBarry Smith DMRegister("my_da", MyDMCreate); 41111c84c290SBarry Smith .ve 41121c84c290SBarry Smith 411320f4b53cSBarry Smith Then, your `DM` type can be chosen with the procedural interface via 41141c84c290SBarry Smith .vb 41151c84c290SBarry Smith DMCreate(MPI_Comm, DM *); 41161c84c290SBarry Smith DMSetType(DM,"my_da"); 41171c84c290SBarry Smith .ve 41181c84c290SBarry Smith or at runtime via the option 41191c84c290SBarry Smith .vb 41201c84c290SBarry Smith -da_type my_da 41211c84c290SBarry Smith .ve 4122264ace61SBarry Smith 41231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMSetType()`, `DMRegisterAll()`, `DMRegisterDestroy()` 4124264ace61SBarry Smith @*/ 4125d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRegister(const char sname[], PetscErrorCode (*function)(DM)) 4126d71ae5a4SJacob Faibussowitsch { 4127264ace61SBarry Smith PetscFunctionBegin; 41289566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 41299566063dSJacob Faibussowitsch PetscCall(PetscFunctionListAdd(&DMList, sname, function)); 41303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4131264ace61SBarry Smith } 4132264ace61SBarry Smith 4133ffeef943SBarry Smith /*@ 4134bb7acecfSBarry Smith DMLoad - Loads a DM that has been stored in binary with `DMView()`. 4135b859378eSBarry Smith 413620f4b53cSBarry Smith Collective 4137b859378eSBarry Smith 4138b859378eSBarry Smith Input Parameters: 4139bb7acecfSBarry Smith + newdm - the newly loaded `DM`, this needs to have been created with `DMCreate()` or 4140bb7acecfSBarry Smith some related function before a call to `DMLoad()`. 4141bb7acecfSBarry Smith - viewer - binary file viewer, obtained from `PetscViewerBinaryOpen()` or 4142bb7acecfSBarry Smith `PETSCVIEWERHDF5` file viewer, obtained from `PetscViewerHDF5Open()` 4143b859378eSBarry Smith 4144b859378eSBarry Smith Level: intermediate 4145b859378eSBarry Smith 4146b859378eSBarry Smith Notes: 414755849f57SBarry Smith The type is determined by the data in the file, any type set into the DM before this call is ignored. 4148b859378eSBarry Smith 4149bb7acecfSBarry Smith Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` format, one can save multiple `DMPLEX` 4150bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 4151bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 4152cd7e8a5eSksagiyam 41531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewerBinaryOpen()`, `DMView()`, `MatLoad()`, `VecLoad()` 4154b859378eSBarry Smith @*/ 4155d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLoad(DM newdm, PetscViewer viewer) 4156d71ae5a4SJacob Faibussowitsch { 41579331c7a4SMatthew G. Knepley PetscBool isbinary, ishdf5; 4158b859378eSBarry Smith 4159b859378eSBarry Smith PetscFunctionBegin; 4160b859378eSBarry Smith PetscValidHeaderSpecific(newdm, DM_CLASSID, 1); 4161b859378eSBarry Smith PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 41629566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckReadable(viewer)); 41639566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 41649566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 41659566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Load, viewer, 0, 0, 0)); 41669331c7a4SMatthew G. Knepley if (isbinary) { 41679331c7a4SMatthew G. Knepley PetscInt classid; 41689331c7a4SMatthew G. Knepley char type[256]; 4169b859378eSBarry Smith 41709566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &classid, 1, NULL, PETSC_INT)); 4171835f2295SStefano Zampini PetscCheck(classid == DM_FILE_CLASSID, PetscObjectComm((PetscObject)newdm), PETSC_ERR_ARG_WRONG, "Not DM next in file, classid found %" PetscInt_FMT, classid); 41729566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, type, 256, NULL, PETSC_CHAR)); 41739566063dSJacob Faibussowitsch PetscCall(DMSetType(newdm, type)); 4174dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 41759331c7a4SMatthew G. Knepley } else if (ishdf5) { 4176dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 41779331c7a4SMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerBinaryOpen() or PetscViewerHDF5Open()"); 41789566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Load, viewer, 0, 0, 0)); 41793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4180b859378eSBarry Smith } 4181b859378eSBarry Smith 41824ee01570SBarry Smith /* FEM Support */ 41837da65231SMatthew G Knepley 41842ecf6ec3SMatthew G. Knepley PetscErrorCode DMPrintCellIndices(PetscInt c, const char name[], PetscInt len, const PetscInt x[]) 41852ecf6ec3SMatthew G. Knepley { 41862ecf6ec3SMatthew G. Knepley PetscInt f; 41872ecf6ec3SMatthew G. Knepley 41882ecf6ec3SMatthew G. Knepley PetscFunctionBegin; 41892ecf6ec3SMatthew G. Knepley PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 41902ecf6ec3SMatthew G. Knepley for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %" PetscInt_FMT " |\n", x[f])); 41912ecf6ec3SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 41922ecf6ec3SMatthew G. Knepley } 41932ecf6ec3SMatthew G. Knepley 4194d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellVector(PetscInt c, const char name[], PetscInt len, const PetscScalar x[]) 4195d71ae5a4SJacob Faibussowitsch { 41961d47ebbbSSatish Balay PetscInt f; 41971b30c384SMatthew G Knepley 41987da65231SMatthew G Knepley PetscFunctionBegin; 419963a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 420048a46eb9SPierre Jolivet for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %g |\n", (double)PetscRealPart(x[f]))); 42013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42027da65231SMatthew G Knepley } 42037da65231SMatthew G Knepley 42045962854dSMatthew G. Knepley PetscErrorCode DMPrintCellVectorReal(PetscInt c, const char name[], PetscInt len, const PetscReal x[]) 42055962854dSMatthew G. Knepley { 42065962854dSMatthew G. Knepley PetscInt f; 42075962854dSMatthew G. Knepley 42085962854dSMatthew G. Knepley PetscFunctionBegin; 42095962854dSMatthew G. Knepley PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 42105962854dSMatthew G. Knepley for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %g |\n", (double)x[f])); 42115962854dSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 42125962854dSMatthew G. Knepley } 42135962854dSMatthew G. Knepley 4214d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellMatrix(PetscInt c, const char name[], PetscInt rows, PetscInt cols, const PetscScalar A[]) 4215d71ae5a4SJacob Faibussowitsch { 42161b30c384SMatthew G Knepley PetscInt f, g; 42177da65231SMatthew G Knepley 42187da65231SMatthew G Knepley PetscFunctionBegin; 421963a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 42201d47ebbbSSatish Balay for (f = 0; f < rows; ++f) { 42219566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |")); 422248a46eb9SPierre Jolivet for (g = 0; g < cols; ++g) PetscCall(PetscPrintf(PETSC_COMM_SELF, " % 9.5g", (double)PetscRealPart(A[f * cols + g]))); 42239566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |\n")); 42247da65231SMatthew G Knepley } 42253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42267da65231SMatthew G Knepley } 4227e7c4fc90SDmitry Karpeev 4228d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintLocalVec(DM dm, const char name[], PetscReal tol, Vec X) 4229d71ae5a4SJacob Faibussowitsch { 42300c5b8624SToby Isaac PetscInt localSize, bs; 42310c5b8624SToby Isaac PetscMPIInt size; 42320c5b8624SToby Isaac Vec x, xglob; 42330c5b8624SToby Isaac const PetscScalar *xarray; 4234e759306cSMatthew G. Knepley 4235e759306cSMatthew G. Knepley PetscFunctionBegin; 42369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 42379566063dSJacob Faibussowitsch PetscCall(VecDuplicate(X, &x)); 42389566063dSJacob Faibussowitsch PetscCall(VecCopy(X, x)); 423993ec0da9SPierre Jolivet PetscCall(VecFilter(x, tol)); 42409566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "%s:\n", name)); 42410c5b8624SToby Isaac if (size > 1) { 42429566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(x, &localSize)); 42439566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xarray)); 42449566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize(x, &bs)); 42459566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)dm), bs, localSize, PETSC_DETERMINE, xarray, &xglob)); 42460c5b8624SToby Isaac } else { 42470c5b8624SToby Isaac xglob = x; 42480c5b8624SToby Isaac } 42499566063dSJacob Faibussowitsch PetscCall(VecView(xglob, PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)dm)))); 42500c5b8624SToby Isaac if (size > 1) { 42519566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xglob)); 42529566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xarray)); 42530c5b8624SToby Isaac } 42549566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 42553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4256e759306cSMatthew G. Knepley } 4257e759306cSMatthew G. Knepley 425888ed4aceSMatthew G Knepley /*@ 4259bb7acecfSBarry Smith DMGetSection - Get the `PetscSection` encoding the local data layout for the `DM`. This is equivalent to `DMGetLocalSection()`. Deprecated in v3.12 4260061576a5SJed Brown 4261061576a5SJed Brown Input Parameter: 4262bb7acecfSBarry Smith . dm - The `DM` 4263061576a5SJed Brown 4264061576a5SJed Brown Output Parameter: 4265bb7acecfSBarry Smith . section - The `PetscSection` 4266061576a5SJed Brown 426720f4b53cSBarry Smith Options Database Key: 4268bb7acecfSBarry Smith . -dm_petscsection_view - View the `PetscSection` created by the `DM` 4269061576a5SJed Brown 4270061576a5SJed Brown Level: advanced 4271061576a5SJed Brown 4272061576a5SJed Brown Notes: 4273bb7acecfSBarry Smith Use `DMGetLocalSection()` in new code. 4274061576a5SJed Brown 4275bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 4276061576a5SJed Brown 42771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetLocalSection()`, `DMSetLocalSection()`, `DMGetGlobalSection()` 4278061576a5SJed Brown @*/ 4279d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSection(DM dm, PetscSection *section) 4280d71ae5a4SJacob Faibussowitsch { 4281061576a5SJed Brown PetscFunctionBegin; 42829566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, section)); 42833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4284061576a5SJed Brown } 4285061576a5SJed Brown 4286061576a5SJed Brown /*@ 4287bb7acecfSBarry Smith DMGetLocalSection - Get the `PetscSection` encoding the local data layout for the `DM`. 428888ed4aceSMatthew G Knepley 428988ed4aceSMatthew G Knepley Input Parameter: 4290bb7acecfSBarry Smith . dm - The `DM` 429188ed4aceSMatthew G Knepley 429288ed4aceSMatthew G Knepley Output Parameter: 4293bb7acecfSBarry Smith . section - The `PetscSection` 429488ed4aceSMatthew G Knepley 429520f4b53cSBarry Smith Options Database Key: 4296bb7acecfSBarry Smith . -dm_petscsection_view - View the section created by the `DM` 4297e5893cccSMatthew G. Knepley 429888ed4aceSMatthew G Knepley Level: intermediate 429988ed4aceSMatthew G Knepley 4300bb7acecfSBarry Smith Note: 4301bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 430288ed4aceSMatthew G Knepley 43031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetGlobalSection()` 430488ed4aceSMatthew G Knepley @*/ 4305d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalSection(DM dm, PetscSection *section) 4306d71ae5a4SJacob Faibussowitsch { 430788ed4aceSMatthew G Knepley PetscFunctionBegin; 430888ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 43094f572ea9SToby Isaac PetscAssertPointer(section, 2); 43101bb6d2a8SBarry Smith if (!dm->localSection && dm->ops->createlocalsection) { 4311e5e52638SMatthew G. Knepley PetscInt d; 4312e5e52638SMatthew G. Knepley 431345480ffeSMatthew G. Knepley if (dm->setfromoptionscalled) { 431445480ffeSMatthew G. Knepley PetscObject obj = (PetscObject)dm; 431545480ffeSMatthew G. Knepley PetscViewer viewer; 431645480ffeSMatthew G. Knepley PetscViewerFormat format; 431745480ffeSMatthew G. Knepley PetscBool flg; 431845480ffeSMatthew G. Knepley 4319648c30bcSBarry Smith PetscCall(PetscOptionsCreateViewer(PetscObjectComm(obj), obj->options, obj->prefix, "-dm_petscds_view", &viewer, &format, &flg)); 43209566063dSJacob Faibussowitsch if (flg) PetscCall(PetscViewerPushFormat(viewer, format)); 432145480ffeSMatthew G. Knepley for (d = 0; d < dm->Nds; ++d) { 43229566063dSJacob Faibussowitsch PetscCall(PetscDSSetFromOptions(dm->probs[d].ds)); 43239566063dSJacob Faibussowitsch if (flg) PetscCall(PetscDSView(dm->probs[d].ds, viewer)); 432445480ffeSMatthew G. Knepley } 432545480ffeSMatthew G. Knepley if (flg) { 43269566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 43279566063dSJacob Faibussowitsch PetscCall(PetscViewerPopFormat(viewer)); 4328648c30bcSBarry Smith PetscCall(PetscViewerDestroy(&viewer)); 432945480ffeSMatthew G. Knepley } 433045480ffeSMatthew G. Knepley } 4331dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalsection); 43329566063dSJacob Faibussowitsch if (dm->localSection) PetscCall(PetscObjectViewFromOptions((PetscObject)dm->localSection, NULL, "-dm_petscsection_view")); 43332f0f8703SMatthew G. Knepley } 43341bb6d2a8SBarry Smith *section = dm->localSection; 43353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 433688ed4aceSMatthew G Knepley } 433788ed4aceSMatthew G Knepley 433888ed4aceSMatthew G Knepley /*@ 4339bb7acecfSBarry Smith DMSetSection - Set the `PetscSection` encoding the local data layout for the `DM`. This is equivalent to `DMSetLocalSection()`. Deprecated in v3.12 4340061576a5SJed Brown 4341061576a5SJed Brown Input Parameters: 4342bb7acecfSBarry Smith + dm - The `DM` 4343bb7acecfSBarry Smith - section - The `PetscSection` 4344061576a5SJed Brown 4345061576a5SJed Brown Level: advanced 4346061576a5SJed Brown 4347061576a5SJed Brown Notes: 4348bb7acecfSBarry Smith Use `DMSetLocalSection()` in new code. 4349061576a5SJed Brown 4350bb7acecfSBarry Smith Any existing `PetscSection` will be destroyed 4351061576a5SJed Brown 43521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()`, `DMSetGlobalSection()` 4353061576a5SJed Brown @*/ 4354d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSection(DM dm, PetscSection section) 4355d71ae5a4SJacob Faibussowitsch { 4356061576a5SJed Brown PetscFunctionBegin; 43579566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm, section)); 43583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4359061576a5SJed Brown } 4360061576a5SJed Brown 4361061576a5SJed Brown /*@ 4362bb7acecfSBarry Smith DMSetLocalSection - Set the `PetscSection` encoding the local data layout for the `DM`. 436388ed4aceSMatthew G Knepley 436488ed4aceSMatthew G Knepley Input Parameters: 4365bb7acecfSBarry Smith + dm - The `DM` 4366bb7acecfSBarry Smith - section - The `PetscSection` 436788ed4aceSMatthew G Knepley 436888ed4aceSMatthew G Knepley Level: intermediate 436988ed4aceSMatthew G Knepley 4370bb7acecfSBarry Smith Note: 4371bb7acecfSBarry Smith Any existing Section will be destroyed 437288ed4aceSMatthew G Knepley 43731cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMSetGlobalSection()` 437488ed4aceSMatthew G Knepley @*/ 4375d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLocalSection(DM dm, PetscSection section) 4376d71ae5a4SJacob Faibussowitsch { 4377c473ab19SMatthew G. Knepley PetscInt numFields = 0; 4378af122d2aSMatthew G Knepley PetscInt f; 437988ed4aceSMatthew G Knepley 438088ed4aceSMatthew G Knepley PetscFunctionBegin; 438188ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4382b9d85ea2SLisandro Dalcin if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 43839566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 43849566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->localSection)); 43851bb6d2a8SBarry Smith dm->localSection = section; 43869566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(dm->localSection, &numFields)); 4387af122d2aSMatthew G Knepley if (numFields) { 43889566063dSJacob Faibussowitsch PetscCall(DMSetNumFields(dm, numFields)); 4389af122d2aSMatthew G Knepley for (f = 0; f < numFields; ++f) { 43900f21e855SMatthew G. Knepley PetscObject disc; 4391af122d2aSMatthew G Knepley const char *name; 4392af122d2aSMatthew G Knepley 43939566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(dm->localSection, f, &name)); 43949566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &disc)); 43959566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName(disc, name)); 4396af122d2aSMatthew G Knepley } 4397af122d2aSMatthew G Knepley } 439850350c8eSStefano Zampini /* The global section and the SectionSF will be rebuilt 439950350c8eSStefano Zampini in the next call to DMGetGlobalSection() and DMGetSectionSF(). */ 44009566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 440150350c8eSStefano Zampini PetscCall(PetscSFDestroy(&dm->sectionSF)); 440252947b74SStefano Zampini PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 440350350c8eSStefano Zampini 440450350c8eSStefano Zampini /* Clear scratch vectors */ 440550350c8eSStefano Zampini PetscCall(DMClearGlobalVectors(dm)); 440650350c8eSStefano Zampini PetscCall(DMClearLocalVectors(dm)); 440750350c8eSStefano Zampini PetscCall(DMClearNamedGlobalVectors(dm)); 440850350c8eSStefano Zampini PetscCall(DMClearNamedLocalVectors(dm)); 44093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 441088ed4aceSMatthew G Knepley } 441188ed4aceSMatthew G Knepley 4412adc21957SMatthew G. Knepley /*@C 4413d8b4a066SPierre Jolivet DMCreateSectionPermutation - Create a permutation of the `PetscSection` chart and optionally a block structure. 4414adc21957SMatthew G. Knepley 4415adc21957SMatthew G. Knepley Input Parameter: 4416adc21957SMatthew G. Knepley . dm - The `DM` 4417adc21957SMatthew G. Knepley 44189cde84edSJose E. Roman Output Parameters: 4419adc21957SMatthew G. Knepley + perm - A permutation of the mesh points in the chart 4420b6971eaeSBarry Smith - blockStarts - A high bit is set for the point that begins every block, or `NULL` for default blocking 4421adc21957SMatthew G. Knepley 4422adc21957SMatthew G. Knepley Level: developer 4423adc21957SMatthew G. Knepley 4424adc21957SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMGetGlobalSection()` 4425adc21957SMatthew G. Knepley @*/ 4426adc21957SMatthew G. Knepley PetscErrorCode DMCreateSectionPermutation(DM dm, IS *perm, PetscBT *blockStarts) 4427adc21957SMatthew G. Knepley { 4428adc21957SMatthew G. Knepley PetscFunctionBegin; 4429adc21957SMatthew G. Knepley *perm = NULL; 4430adc21957SMatthew G. Knepley *blockStarts = NULL; 4431adc21957SMatthew G. Knepley PetscTryTypeMethod(dm, createsectionpermutation, perm, blockStarts); 4432adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 4433adc21957SMatthew G. Knepley } 4434adc21957SMatthew G. Knepley 44359435951eSToby Isaac /*@ 4436bb7acecfSBarry Smith DMGetDefaultConstraints - Get the `PetscSection` and `Mat` that specify the local constraint interpolation. See `DMSetDefaultConstraints()` for a description of the purpose of constraint interpolation. 44379435951eSToby Isaac 443820f4b53cSBarry Smith not Collective 4439e228b242SToby Isaac 44409435951eSToby Isaac Input Parameter: 4441bb7acecfSBarry Smith . dm - The `DM` 44429435951eSToby Isaac 4443d8d19677SJose E. Roman Output Parameters: 444420f4b53cSBarry Smith + section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Returns `NULL` if there are no local constraints. 444520f4b53cSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section. Returns `NULL` if there are no local constraints. 444679769bd5SJed Brown - bias - Vector containing bias to be added to constrained dofs 44479435951eSToby Isaac 44489435951eSToby Isaac Level: advanced 44499435951eSToby Isaac 4450bb7acecfSBarry Smith Note: 4451bb7acecfSBarry Smith This gets borrowed references, so the user should not destroy the `PetscSection`, `Mat`, or `Vec`. 44529435951eSToby Isaac 44531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDefaultConstraints()` 44549435951eSToby Isaac @*/ 4455d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDefaultConstraints(DM dm, PetscSection *section, Mat *mat, Vec *bias) 4456d71ae5a4SJacob Faibussowitsch { 44579435951eSToby Isaac PetscFunctionBegin; 44589435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4459dbbe0bcdSBarry Smith if (!dm->defaultConstraint.section && !dm->defaultConstraint.mat && dm->ops->createdefaultconstraints) PetscUseTypeMethod(dm, createdefaultconstraints); 44603b8ba7d1SJed Brown if (section) *section = dm->defaultConstraint.section; 44613b8ba7d1SJed Brown if (mat) *mat = dm->defaultConstraint.mat; 446279769bd5SJed Brown if (bias) *bias = dm->defaultConstraint.bias; 44633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44649435951eSToby Isaac } 44659435951eSToby Isaac 44669435951eSToby Isaac /*@ 4467bb7acecfSBarry Smith DMSetDefaultConstraints - Set the `PetscSection` and `Mat` that specify the local constraint interpolation. 44689435951eSToby Isaac 446920f4b53cSBarry Smith Collective 4470e228b242SToby Isaac 44719435951eSToby Isaac Input Parameters: 4472bb7acecfSBarry Smith + dm - The `DM` 4473bb7acecfSBarry Smith . section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 447420f4b53cSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section: `NULL` indicates no constraints. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 447520f4b53cSBarry Smith - bias - A bias vector to be added to constrained values in the local vector. `NULL` indicates no bias. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 44769435951eSToby Isaac 44779435951eSToby Isaac Level: advanced 44789435951eSToby Isaac 447920f4b53cSBarry Smith Notes: 448020f4b53cSBarry Smith If a constraint matrix is specified, then it is applied during `DMGlobalToLocalEnd()` when mode is `INSERT_VALUES`, `INSERT_BC_VALUES`, or `INSERT_ALL_VALUES`. Without a constraint matrix, the local vector l returned by `DMGlobalToLocalEnd()` contains values that have been scattered from a global vector without modification; with a constraint matrix A, l is modified by computing c = A * l + bias, l[s[i]] = c[i], where the scatter s is defined by the `PetscSection` returned by `DMGetDefaultConstraints()`. 448120f4b53cSBarry Smith 448220f4b53cSBarry Smith If a constraint matrix is specified, then its adjoint is applied during `DMLocalToGlobalBegin()` when mode is `ADD_VALUES`, `ADD_BC_VALUES`, or `ADD_ALL_VALUES`. Without a constraint matrix, the local vector l is accumulated into a global vector without modification; with a constraint matrix A, l is first modified by computing c[i] = l[s[i]], l[s[i]] = 0, l = l + A'*c, which is the adjoint of the operation described above. Any bias, if specified, is ignored when accumulating. 448320f4b53cSBarry Smith 4484bb7acecfSBarry Smith This increments the references of the `PetscSection`, `Mat`, and `Vec`, so they user can destroy them. 44859435951eSToby Isaac 44861cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDefaultConstraints()` 44879435951eSToby Isaac @*/ 4488d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDefaultConstraints(DM dm, PetscSection section, Mat mat, Vec bias) 4489d71ae5a4SJacob Faibussowitsch { 4490e228b242SToby Isaac PetscMPIInt result; 44919435951eSToby Isaac 44929435951eSToby Isaac PetscFunctionBegin; 44939435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4494e228b242SToby Isaac if (section) { 4495e228b242SToby Isaac PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 44969566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)section), &result)); 44977a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint section must have local communicator"); 4498e228b242SToby Isaac } 4499e228b242SToby Isaac if (mat) { 4500e228b242SToby Isaac PetscValidHeaderSpecific(mat, MAT_CLASSID, 3); 45019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)mat), &result)); 45027a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint matrix must have local communicator"); 4503e228b242SToby Isaac } 450479769bd5SJed Brown if (bias) { 450579769bd5SJed Brown PetscValidHeaderSpecific(bias, VEC_CLASSID, 4); 45069566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)bias), &result)); 450779769bd5SJed Brown PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint bias must have local communicator"); 450879769bd5SJed Brown } 45099566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 45109566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->defaultConstraint.section)); 45113b8ba7d1SJed Brown dm->defaultConstraint.section = section; 45129566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mat)); 45139566063dSJacob Faibussowitsch PetscCall(MatDestroy(&dm->defaultConstraint.mat)); 45143b8ba7d1SJed Brown dm->defaultConstraint.mat = mat; 45159566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)bias)); 45169566063dSJacob Faibussowitsch PetscCall(VecDestroy(&dm->defaultConstraint.bias)); 451779769bd5SJed Brown dm->defaultConstraint.bias = bias; 45183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 45199435951eSToby Isaac } 45209435951eSToby Isaac 4521497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 4522507e4973SMatthew G. Knepley /* 4523bb7acecfSBarry Smith DMDefaultSectionCheckConsistency - Check the consistentcy of the global and local sections. Generates and error if they are not consistent. 4524507e4973SMatthew G. Knepley 4525507e4973SMatthew G. Knepley Input Parameters: 4526bb7acecfSBarry Smith + dm - The `DM` 4527bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4528bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 4529507e4973SMatthew G. Knepley 4530507e4973SMatthew G. Knepley Level: intermediate 4531507e4973SMatthew G. Knepley 45321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()` 4533507e4973SMatthew G. Knepley */ 4534d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(DM dm, PetscSection localSection, PetscSection globalSection) 4535d71ae5a4SJacob Faibussowitsch { 4536507e4973SMatthew G. Knepley MPI_Comm comm; 4537507e4973SMatthew G. Knepley PetscLayout layout; 4538507e4973SMatthew G. Knepley const PetscInt *ranges; 4539507e4973SMatthew G. Knepley PetscInt pStart, pEnd, p, nroots; 4540507e4973SMatthew G. Knepley PetscMPIInt size, rank; 4541507e4973SMatthew G. Knepley PetscBool valid = PETSC_TRUE, gvalid; 4542507e4973SMatthew G. Knepley 4543507e4973SMatthew G. Knepley PetscFunctionBegin; 45449566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 4545507e4973SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45469566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 45479566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 45489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(globalSection, &pStart, &pEnd)); 45499566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &nroots)); 45509566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &layout)); 45519566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(layout, 1)); 45529566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(layout, nroots)); 45539566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(layout)); 45549566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(layout, &ranges)); 4555507e4973SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 4556f741bcd2SMatthew G. Knepley PetscInt dof, cdof, off, gdof, gcdof, goff, gsize, d; 4557507e4973SMatthew G. Knepley 45589566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(localSection, p, &dof)); 45599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(localSection, p, &off)); 45609566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(localSection, p, &cdof)); 45619566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(globalSection, p, &gdof)); 45629566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(globalSection, p, &gcdof)); 45639566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalSection, p, &goff)); 4564507e4973SMatthew G. Knepley if (!gdof) continue; /* Censored point */ 45659371c9d4SSatish Balay if ((gdof < 0 ? -(gdof + 1) : gdof) != dof) { 45669371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local dof %" PetscInt_FMT "\n", rank, gdof, p, dof)); 45679371c9d4SSatish Balay valid = PETSC_FALSE; 45689371c9d4SSatish Balay } 45699371c9d4SSatish Balay if (gcdof && (gcdof != cdof)) { 45709371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global constraints %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local constraints %" PetscInt_FMT "\n", rank, gcdof, p, cdof)); 45719371c9d4SSatish Balay valid = PETSC_FALSE; 45729371c9d4SSatish Balay } 4573507e4973SMatthew G. Knepley if (gdof < 0) { 4574507e4973SMatthew G. Knepley gsize = gdof < 0 ? -(gdof + 1) - gcdof : gdof - gcdof; 4575507e4973SMatthew G. Knepley for (d = 0; d < gsize; ++d) { 4576507e4973SMatthew G. Knepley PetscInt offset = -(goff + 1) + d, r; 4577507e4973SMatthew G. Knepley 45789566063dSJacob Faibussowitsch PetscCall(PetscFindInt(offset, size + 1, ranges, &r)); 4579507e4973SMatthew G. Knepley if (r < 0) r = -(r + 2); 45809371c9d4SSatish Balay if ((r < 0) || (r >= size)) { 45819371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Point %" PetscInt_FMT " mapped to invalid process %" PetscInt_FMT " (%" PetscInt_FMT ", %" PetscInt_FMT ")\n", rank, p, r, gdof, goff)); 45829371c9d4SSatish Balay valid = PETSC_FALSE; 45839371c9d4SSatish Balay break; 45849371c9d4SSatish Balay } 4585507e4973SMatthew G. Knepley } 4586507e4973SMatthew G. Knepley } 4587507e4973SMatthew G. Knepley } 45889566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&layout)); 45899566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, NULL)); 4590462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&valid, &gvalid, 1, MPIU_BOOL, MPI_LAND, comm)); 4591507e4973SMatthew G. Knepley if (!gvalid) { 45929566063dSJacob Faibussowitsch PetscCall(DMView(dm, NULL)); 4593507e4973SMatthew G. Knepley SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Inconsistent local and global sections"); 4594507e4973SMatthew G. Knepley } 45953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4596507e4973SMatthew G. Knepley } 4597f741bcd2SMatthew G. Knepley #endif 4598507e4973SMatthew G. Knepley 45995f06a3ddSJed Brown static PetscErrorCode DMGetIsoperiodicPointSF_Internal(DM dm, PetscSF *sf) 46006725e60dSJed Brown { 46016725e60dSJed Brown PetscErrorCode (*f)(DM, PetscSF *); 46024d86920dSPierre Jolivet 46036725e60dSJed Brown PetscFunctionBegin; 46046725e60dSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46054f572ea9SToby Isaac PetscAssertPointer(sf, 2); 46065f06a3ddSJed Brown PetscCall(PetscObjectQueryFunction((PetscObject)dm, "DMGetIsoperiodicPointSF_C", &f)); 46076725e60dSJed Brown if (f) PetscCall(f(dm, sf)); 46086725e60dSJed Brown else *sf = dm->sf; 46093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 46106725e60dSJed Brown } 46116725e60dSJed Brown 461288ed4aceSMatthew G Knepley /*@ 4613bb7acecfSBarry Smith DMGetGlobalSection - Get the `PetscSection` encoding the global data layout for the `DM`. 461488ed4aceSMatthew G Knepley 461520f4b53cSBarry Smith Collective 46168b1ab98fSJed Brown 461788ed4aceSMatthew G Knepley Input Parameter: 4618bb7acecfSBarry Smith . dm - The `DM` 461988ed4aceSMatthew G Knepley 462088ed4aceSMatthew G Knepley Output Parameter: 4621bb7acecfSBarry Smith . section - The `PetscSection` 462288ed4aceSMatthew G Knepley 462388ed4aceSMatthew G Knepley Level: intermediate 462488ed4aceSMatthew G Knepley 4625bb7acecfSBarry Smith Note: 4626bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 462788ed4aceSMatthew G Knepley 46281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()` 462988ed4aceSMatthew G Knepley @*/ 4630d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetGlobalSection(DM dm, PetscSection *section) 4631d71ae5a4SJacob Faibussowitsch { 463288ed4aceSMatthew G Knepley PetscFunctionBegin; 463388ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46344f572ea9SToby Isaac PetscAssertPointer(section, 2); 46351bb6d2a8SBarry Smith if (!dm->globalSection) { 4636fd59a867SMatthew G. Knepley PetscSection s; 46376725e60dSJed Brown PetscSF sf; 4638fd59a867SMatthew G. Knepley 46399566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 46407a8be351SBarry Smith PetscCheck(s, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a default PetscSection in order to create a global PetscSection"); 46417a8be351SBarry Smith PetscCheck(dm->sf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a point PetscSF in order to create a global PetscSection"); 46425f06a3ddSJed Brown PetscCall(DMGetIsoperiodicPointSF_Internal(dm, &sf)); 4643eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionCreateGlobalSection(s, sf, PETSC_TRUE, PETSC_FALSE, PETSC_FALSE, &dm->globalSection)); 46449566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&dm->map)); 46459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetValueLayout(PetscObjectComm((PetscObject)dm), dm->globalSection, &dm->map)); 46469566063dSJacob Faibussowitsch PetscCall(PetscSectionViewFromOptions(dm->globalSection, NULL, "-global_section_view")); 464788ed4aceSMatthew G Knepley } 46481bb6d2a8SBarry Smith *section = dm->globalSection; 46493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 465088ed4aceSMatthew G Knepley } 465188ed4aceSMatthew G Knepley 4652b21d0597SMatthew G Knepley /*@ 4653bb7acecfSBarry Smith DMSetGlobalSection - Set the `PetscSection` encoding the global data layout for the `DM`. 4654b21d0597SMatthew G Knepley 4655b21d0597SMatthew G Knepley Input Parameters: 4656bb7acecfSBarry Smith + dm - The `DM` 46572fe279fdSBarry Smith - section - The PetscSection, or `NULL` 4658b21d0597SMatthew G Knepley 4659b21d0597SMatthew G Knepley Level: intermediate 4660b21d0597SMatthew G Knepley 4661bb7acecfSBarry Smith Note: 4662bb7acecfSBarry Smith Any existing `PetscSection` will be destroyed 4663b21d0597SMatthew G Knepley 46641cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetGlobalSection()`, `DMSetLocalSection()` 4665b21d0597SMatthew G Knepley @*/ 4666d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetGlobalSection(DM dm, PetscSection section) 4667d71ae5a4SJacob Faibussowitsch { 4668b21d0597SMatthew G Knepley PetscFunctionBegin; 4669b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46705080bbdbSMatthew G Knepley if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 46719566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 46729566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 46731bb6d2a8SBarry Smith dm->globalSection = section; 4674497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 46759566063dSJacob Faibussowitsch if (section) PetscCall(DMDefaultSectionCheckConsistency_Internal(dm, dm->localSection, section)); 4676507e4973SMatthew G. Knepley #endif 467750350c8eSStefano Zampini /* Clear global scratch vectors and sectionSF */ 467850350c8eSStefano Zampini PetscCall(PetscSFDestroy(&dm->sectionSF)); 467952947b74SStefano Zampini PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 468050350c8eSStefano Zampini PetscCall(DMClearGlobalVectors(dm)); 468150350c8eSStefano Zampini PetscCall(DMClearNamedGlobalVectors(dm)); 46823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4683b21d0597SMatthew G Knepley } 4684b21d0597SMatthew G Knepley 468588ed4aceSMatthew G Knepley /*@ 4686bb7acecfSBarry Smith DMGetSectionSF - Get the `PetscSF` encoding the parallel dof overlap for the `DM`. If it has not been set, 4687bb7acecfSBarry Smith it is created from the default `PetscSection` layouts in the `DM`. 468888ed4aceSMatthew G Knepley 468988ed4aceSMatthew G Knepley Input Parameter: 4690bb7acecfSBarry Smith . dm - The `DM` 469188ed4aceSMatthew G Knepley 469288ed4aceSMatthew G Knepley Output Parameter: 4693bb7acecfSBarry Smith . sf - The `PetscSF` 469488ed4aceSMatthew G Knepley 469588ed4aceSMatthew G Knepley Level: intermediate 469688ed4aceSMatthew G Knepley 4697bb7acecfSBarry Smith Note: 4698bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 469988ed4aceSMatthew G Knepley 47001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetSectionSF()`, `DMCreateSectionSF()` 470188ed4aceSMatthew G Knepley @*/ 4702d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSectionSF(DM dm, PetscSF *sf) 4703d71ae5a4SJacob Faibussowitsch { 470488ed4aceSMatthew G Knepley PetscInt nroots; 470588ed4aceSMatthew G Knepley 470688ed4aceSMatthew G Knepley PetscFunctionBegin; 470788ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47084f572ea9SToby Isaac PetscAssertPointer(sf, 2); 470948a46eb9SPierre Jolivet if (!dm->sectionSF) PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 47109566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sectionSF, &nroots, NULL, NULL, NULL)); 471188ed4aceSMatthew G Knepley if (nroots < 0) { 471288ed4aceSMatthew G Knepley PetscSection section, gSection; 471388ed4aceSMatthew G Knepley 47149566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 471531ea6d37SMatthew G Knepley if (section) { 47169566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gSection)); 47179566063dSJacob Faibussowitsch PetscCall(DMCreateSectionSF(dm, section, gSection)); 471831ea6d37SMatthew G Knepley } else { 47190298fd71SBarry Smith *sf = NULL; 47203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 472131ea6d37SMatthew G Knepley } 472288ed4aceSMatthew G Knepley } 47231bb6d2a8SBarry Smith *sf = dm->sectionSF; 47243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 472588ed4aceSMatthew G Knepley } 472688ed4aceSMatthew G Knepley 472788ed4aceSMatthew G Knepley /*@ 4728bb7acecfSBarry Smith DMSetSectionSF - Set the `PetscSF` encoding the parallel dof overlap for the `DM` 472988ed4aceSMatthew G Knepley 473088ed4aceSMatthew G Knepley Input Parameters: 4731bb7acecfSBarry Smith + dm - The `DM` 4732bb7acecfSBarry Smith - sf - The `PetscSF` 473388ed4aceSMatthew G Knepley 473488ed4aceSMatthew G Knepley Level: intermediate 473588ed4aceSMatthew G Knepley 4736bb7acecfSBarry Smith Note: 4737bb7acecfSBarry Smith Any previous `PetscSF` is destroyed 473888ed4aceSMatthew G Knepley 47391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMCreateSectionSF()` 474088ed4aceSMatthew G Knepley @*/ 4741d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSectionSF(DM dm, PetscSF sf) 4742d71ae5a4SJacob Faibussowitsch { 474388ed4aceSMatthew G Knepley PetscFunctionBegin; 474488ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4745b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 47469566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 47479566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sectionSF)); 47481bb6d2a8SBarry Smith dm->sectionSF = sf; 47493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 475088ed4aceSMatthew G Knepley } 475188ed4aceSMatthew G Knepley 4752cc4c1da9SBarry Smith /*@ 4753bb7acecfSBarry Smith DMCreateSectionSF - Create the `PetscSF` encoding the parallel dof overlap for the `DM` based upon the `PetscSection`s 475488ed4aceSMatthew G Knepley describing the data layout. 475588ed4aceSMatthew G Knepley 475688ed4aceSMatthew G Knepley Input Parameters: 4757bb7acecfSBarry Smith + dm - The `DM` 4758bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4759bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 476088ed4aceSMatthew G Knepley 47611bb6d2a8SBarry Smith Level: developer 47621bb6d2a8SBarry Smith 4763bb7acecfSBarry Smith Note: 4764bb7acecfSBarry Smith One usually uses `DMGetSectionSF()` to obtain the `PetscSF` 4765bb7acecfSBarry Smith 476673ff1848SBarry Smith Developer Note: 4767bb7acecfSBarry Smith Since this routine has for arguments the two sections from the `DM` and puts the resulting `PetscSF` 4768bb7acecfSBarry Smith directly into the `DM`, perhaps this function should not take the local and global sections as 4769b6971eaeSBarry Smith input and should just obtain them from the `DM`? Plus PETSc creation functions return the thing 4770b6971eaeSBarry Smith they create, this returns nothing 47711bb6d2a8SBarry Smith 47721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMGetLocalSection()`, `DMGetGlobalSection()` 477388ed4aceSMatthew G Knepley @*/ 4774d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSectionSF(DM dm, PetscSection localSection, PetscSection globalSection) 4775d71ae5a4SJacob Faibussowitsch { 477688ed4aceSMatthew G Knepley PetscFunctionBegin; 477788ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47789566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphSection(dm->sectionSF, localSection, globalSection)); 47793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 478088ed4aceSMatthew G Knepley } 4781af122d2aSMatthew G Knepley 4782b21d0597SMatthew G Knepley /*@ 4783bb7acecfSBarry Smith DMGetPointSF - Get the `PetscSF` encoding the parallel section point overlap for the `DM`. 4784bb7acecfSBarry Smith 4785bb7acecfSBarry Smith Not collective but the resulting `PetscSF` is collective 4786b21d0597SMatthew G Knepley 4787b21d0597SMatthew G Knepley Input Parameter: 4788bb7acecfSBarry Smith . dm - The `DM` 4789b21d0597SMatthew G Knepley 4790b21d0597SMatthew G Knepley Output Parameter: 4791bb7acecfSBarry Smith . sf - The `PetscSF` 4792b21d0597SMatthew G Knepley 4793b21d0597SMatthew G Knepley Level: intermediate 4794b21d0597SMatthew G Knepley 4795bb7acecfSBarry Smith Note: 4796bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 4797b21d0597SMatthew G Knepley 47981cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4799b21d0597SMatthew G Knepley @*/ 4800d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetPointSF(DM dm, PetscSF *sf) 4801d71ae5a4SJacob Faibussowitsch { 4802b21d0597SMatthew G Knepley PetscFunctionBegin; 4803b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48044f572ea9SToby Isaac PetscAssertPointer(sf, 2); 4805b21d0597SMatthew G Knepley *sf = dm->sf; 48063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4807b21d0597SMatthew G Knepley } 4808b21d0597SMatthew G Knepley 4809057b4bcdSMatthew G Knepley /*@ 4810bb7acecfSBarry Smith DMSetPointSF - Set the `PetscSF` encoding the parallel section point overlap for the `DM`. 4811bb7acecfSBarry Smith 481220f4b53cSBarry Smith Collective 4813057b4bcdSMatthew G Knepley 4814057b4bcdSMatthew G Knepley Input Parameters: 4815bb7acecfSBarry Smith + dm - The `DM` 4816bb7acecfSBarry Smith - sf - The `PetscSF` 4817057b4bcdSMatthew G Knepley 4818057b4bcdSMatthew G Knepley Level: intermediate 4819057b4bcdSMatthew G Knepley 48201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4821057b4bcdSMatthew G Knepley @*/ 4822d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetPointSF(DM dm, PetscSF sf) 4823d71ae5a4SJacob Faibussowitsch { 4824057b4bcdSMatthew G Knepley PetscFunctionBegin; 4825057b4bcdSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4826b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 48279566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 48289566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sf)); 4829057b4bcdSMatthew G Knepley dm->sf = sf; 48303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4831057b4bcdSMatthew G Knepley } 4832057b4bcdSMatthew G Knepley 48334f37162bSMatthew G. Knepley /*@ 4834bb7acecfSBarry Smith DMGetNaturalSF - Get the `PetscSF` encoding the map back to the original mesh ordering 48354f37162bSMatthew G. Knepley 48364f37162bSMatthew G. Knepley Input Parameter: 4837bb7acecfSBarry Smith . dm - The `DM` 48384f37162bSMatthew G. Knepley 48394f37162bSMatthew G. Knepley Output Parameter: 4840bb7acecfSBarry Smith . sf - The `PetscSF` 48414f37162bSMatthew G. Knepley 48424f37162bSMatthew G. Knepley Level: intermediate 48434f37162bSMatthew G. Knepley 4844bb7acecfSBarry Smith Note: 4845bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 48464f37162bSMatthew G. Knepley 48471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 48484f37162bSMatthew G. Knepley @*/ 4849d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNaturalSF(DM dm, PetscSF *sf) 4850d71ae5a4SJacob Faibussowitsch { 48514f37162bSMatthew G. Knepley PetscFunctionBegin; 48524f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48534f572ea9SToby Isaac PetscAssertPointer(sf, 2); 48544f37162bSMatthew G. Knepley *sf = dm->sfNatural; 48553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48564f37162bSMatthew G. Knepley } 48574f37162bSMatthew G. Knepley 48584f37162bSMatthew G. Knepley /*@ 48594f37162bSMatthew G. Knepley DMSetNaturalSF - Set the PetscSF encoding the map back to the original mesh ordering 48604f37162bSMatthew G. Knepley 48614f37162bSMatthew G. Knepley Input Parameters: 48624f37162bSMatthew G. Knepley + dm - The DM 48634f37162bSMatthew G. Knepley - sf - The PetscSF 48644f37162bSMatthew G. Knepley 48654f37162bSMatthew G. Knepley Level: intermediate 48664f37162bSMatthew G. Knepley 48671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 48684f37162bSMatthew G. Knepley @*/ 4869d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNaturalSF(DM dm, PetscSF sf) 4870d71ae5a4SJacob Faibussowitsch { 48714f37162bSMatthew G. Knepley PetscFunctionBegin; 48724f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48734f37162bSMatthew G. Knepley if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 48749566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 48759566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sfNatural)); 48764f37162bSMatthew G. Knepley dm->sfNatural = sf; 48773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48784f37162bSMatthew G. Knepley } 48794f37162bSMatthew G. Knepley 4880d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetDefaultAdjacency_Private(DM dm, PetscInt f, PetscObject disc) 4881d71ae5a4SJacob Faibussowitsch { 488234aa8a36SMatthew G. Knepley PetscClassId id; 488334aa8a36SMatthew G. Knepley 488434aa8a36SMatthew G. Knepley PetscFunctionBegin; 48859566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 488634aa8a36SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 48879566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 488834aa8a36SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 48899566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_TRUE, PETSC_FALSE)); 489017c1d62eSMatthew G. Knepley } else { 48919566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 489234aa8a36SMatthew G. Knepley } 48933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 489434aa8a36SMatthew G. Knepley } 489534aa8a36SMatthew G. Knepley 4896d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFieldEnlarge_Static(DM dm, PetscInt NfNew) 4897d71ae5a4SJacob Faibussowitsch { 489844a7f3ddSMatthew G. Knepley RegionField *tmpr; 489944a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf, f; 490044a7f3ddSMatthew G. Knepley 490144a7f3ddSMatthew G. Knepley PetscFunctionBegin; 49023ba16761SJacob Faibussowitsch if (Nf >= NfNew) PetscFunctionReturn(PETSC_SUCCESS); 49039566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NfNew, &tmpr)); 490444a7f3ddSMatthew G. Knepley for (f = 0; f < Nf; ++f) tmpr[f] = dm->fields[f]; 49059371c9d4SSatish Balay for (f = Nf; f < NfNew; ++f) { 49069371c9d4SSatish Balay tmpr[f].disc = NULL; 49079371c9d4SSatish Balay tmpr[f].label = NULL; 49089371c9d4SSatish Balay tmpr[f].avoidTensor = PETSC_FALSE; 49099371c9d4SSatish Balay } 49109566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 491144a7f3ddSMatthew G. Knepley dm->Nf = NfNew; 491244a7f3ddSMatthew G. Knepley dm->fields = tmpr; 49133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 491444a7f3ddSMatthew G. Knepley } 491544a7f3ddSMatthew G. Knepley 491644a7f3ddSMatthew G. Knepley /*@ 491720f4b53cSBarry Smith DMClearFields - Remove all fields from the `DM` 491844a7f3ddSMatthew G. Knepley 491920f4b53cSBarry Smith Logically Collective 492044a7f3ddSMatthew G. Knepley 492144a7f3ddSMatthew G. Knepley Input Parameter: 492220f4b53cSBarry Smith . dm - The `DM` 492344a7f3ddSMatthew G. Knepley 492444a7f3ddSMatthew G. Knepley Level: intermediate 492544a7f3ddSMatthew G. Knepley 49261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetNumFields()`, `DMSetField()` 492744a7f3ddSMatthew G. Knepley @*/ 4928d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearFields(DM dm) 4929d71ae5a4SJacob Faibussowitsch { 493044a7f3ddSMatthew G. Knepley PetscInt f; 493144a7f3ddSMatthew G. Knepley 493244a7f3ddSMatthew G. Knepley PetscFunctionBegin; 493344a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 493444a7f3ddSMatthew G. Knepley for (f = 0; f < dm->Nf; ++f) { 49359566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 49369566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 493744a7f3ddSMatthew G. Knepley } 49389566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 493944a7f3ddSMatthew G. Knepley dm->fields = NULL; 494044a7f3ddSMatthew G. Knepley dm->Nf = 0; 49413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 494244a7f3ddSMatthew G. Knepley } 494344a7f3ddSMatthew G. Knepley 4944689b5837SMatthew G. Knepley /*@ 494520f4b53cSBarry Smith DMGetNumFields - Get the number of fields in the `DM` 4946689b5837SMatthew G. Knepley 494720f4b53cSBarry Smith Not Collective 4948689b5837SMatthew G. Knepley 4949689b5837SMatthew G. Knepley Input Parameter: 495020f4b53cSBarry Smith . dm - The `DM` 4951689b5837SMatthew G. Knepley 4952689b5837SMatthew G. Knepley Output Parameter: 495360225df5SJacob Faibussowitsch . numFields - The number of fields 4954689b5837SMatthew G. Knepley 4955689b5837SMatthew G. Knepley Level: intermediate 4956689b5837SMatthew G. Knepley 49571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNumFields()`, `DMSetField()` 4958689b5837SMatthew G. Knepley @*/ 4959d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumFields(DM dm, PetscInt *numFields) 4960d71ae5a4SJacob Faibussowitsch { 49610f21e855SMatthew G. Knepley PetscFunctionBegin; 49620f21e855SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49634f572ea9SToby Isaac PetscAssertPointer(numFields, 2); 496444a7f3ddSMatthew G. Knepley *numFields = dm->Nf; 49653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4966af122d2aSMatthew G Knepley } 4967af122d2aSMatthew G Knepley 4968689b5837SMatthew G. Knepley /*@ 496920f4b53cSBarry Smith DMSetNumFields - Set the number of fields in the `DM` 4970689b5837SMatthew G. Knepley 497120f4b53cSBarry Smith Logically Collective 4972689b5837SMatthew G. Knepley 4973689b5837SMatthew G. Knepley Input Parameters: 497420f4b53cSBarry Smith + dm - The `DM` 497560225df5SJacob Faibussowitsch - numFields - The number of fields 4976689b5837SMatthew G. Knepley 4977689b5837SMatthew G. Knepley Level: intermediate 4978689b5837SMatthew G. Knepley 49791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetField()` 4980689b5837SMatthew G. Knepley @*/ 4981d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNumFields(DM dm, PetscInt numFields) 4982d71ae5a4SJacob Faibussowitsch { 49830f21e855SMatthew G. Knepley PetscInt Nf, f; 4984af122d2aSMatthew G Knepley 4985af122d2aSMatthew G Knepley PetscFunctionBegin; 4986af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49879566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 49880f21e855SMatthew G. Knepley for (f = Nf; f < numFields; ++f) { 49890f21e855SMatthew G. Knepley PetscContainer obj; 49900f21e855SMatthew G. Knepley 49919566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject)dm), &obj)); 49929566063dSJacob Faibussowitsch PetscCall(DMAddField(dm, NULL, (PetscObject)obj)); 49939566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&obj)); 4994af122d2aSMatthew G Knepley } 49953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4996af122d2aSMatthew G Knepley } 4997af122d2aSMatthew G Knepley 4998c1929be8SMatthew G. Knepley /*@ 4999bb7acecfSBarry Smith DMGetField - Return the `DMLabel` and discretization object for a given `DM` field 5000c1929be8SMatthew G. Knepley 500120f4b53cSBarry Smith Not Collective 5002c1929be8SMatthew G. Knepley 5003c1929be8SMatthew G. Knepley Input Parameters: 5004bb7acecfSBarry Smith + dm - The `DM` 5005c1929be8SMatthew G. Knepley - f - The field number 5006c1929be8SMatthew G. Knepley 500744a7f3ddSMatthew G. Knepley Output Parameters: 500820f4b53cSBarry Smith + label - The label indicating the support of the field, or `NULL` for the entire mesh (pass in `NULL` if not needed) 500920f4b53cSBarry Smith - disc - The discretization object (pass in `NULL` if not needed) 5010c1929be8SMatthew G. Knepley 501144a7f3ddSMatthew G. Knepley Level: intermediate 5012c1929be8SMatthew G. Knepley 50131cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()` 5014c1929be8SMatthew G. Knepley @*/ 5015d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetField(DM dm, PetscInt f, DMLabel *label, PetscObject *disc) 5016d71ae5a4SJacob Faibussowitsch { 5017af122d2aSMatthew G Knepley PetscFunctionBegin; 5018af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 50194f572ea9SToby Isaac PetscAssertPointer(disc, 4); 50207a8be351SBarry Smith PetscCheck((f >= 0) && (f < dm->Nf), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, dm->Nf); 502144a7f3ddSMatthew G. Knepley if (label) *label = dm->fields[f].label; 5022bb7acecfSBarry Smith if (disc) *disc = dm->fields[f].disc; 50233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5024decb47aaSMatthew G. Knepley } 5025decb47aaSMatthew G. Knepley 5026083401c6SMatthew G. Knepley /* Does not clear the DS */ 5027d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField_Internal(DM dm, PetscInt f, DMLabel label, PetscObject disc) 5028d71ae5a4SJacob Faibussowitsch { 5029083401c6SMatthew G. Knepley PetscFunctionBegin; 50309566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, f + 1)); 50319566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 50329566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 5033083401c6SMatthew G. Knepley dm->fields[f].label = label; 5034bb7acecfSBarry Smith dm->fields[f].disc = disc; 50359566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 5036835f2295SStefano Zampini PetscCall(PetscObjectReference(disc)); 50373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5038083401c6SMatthew G. Knepley } 5039083401c6SMatthew G. Knepley 5040ffeef943SBarry Smith /*@ 5041bb7acecfSBarry Smith DMSetField - Set the discretization object for a given `DM` field. Usually one would call `DMAddField()` which automatically handles 5042bb7acecfSBarry Smith the field numbering. 5043c1929be8SMatthew G. Knepley 504420f4b53cSBarry Smith Logically Collective 5045c1929be8SMatthew G. Knepley 5046c1929be8SMatthew G. Knepley Input Parameters: 5047bb7acecfSBarry Smith + dm - The `DM` 5048c1929be8SMatthew G. Knepley . f - The field number 504920f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh 5050bb7acecfSBarry Smith - disc - The discretization object 5051c1929be8SMatthew G. Knepley 505244a7f3ddSMatthew G. Knepley Level: intermediate 5053c1929be8SMatthew G. Knepley 50541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()` 5055c1929be8SMatthew G. Knepley @*/ 5056d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField(DM dm, PetscInt f, DMLabel label, PetscObject disc) 5057d71ae5a4SJacob Faibussowitsch { 5058decb47aaSMatthew G. Knepley PetscFunctionBegin; 5059decb47aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5060e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 5061bb7acecfSBarry Smith PetscValidHeader(disc, 4); 50627a8be351SBarry Smith PetscCheck(f >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be non-negative", f); 5063bb7acecfSBarry Smith PetscCall(DMSetField_Internal(dm, f, label, disc)); 5064bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, f, disc)); 50659566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 50663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 506744a7f3ddSMatthew G. Knepley } 506844a7f3ddSMatthew G. Knepley 5069ffeef943SBarry Smith /*@ 5070bb7acecfSBarry Smith DMAddField - Add a field to a `DM` object. A field is a function space defined by of a set of discretization points (geometric entities) 5071bb7acecfSBarry Smith and a discretization object that defines the function space associated with those points. 507244a7f3ddSMatthew G. Knepley 507320f4b53cSBarry Smith Logically Collective 507444a7f3ddSMatthew G. Knepley 507544a7f3ddSMatthew G. Knepley Input Parameters: 5076bb7acecfSBarry Smith + dm - The `DM` 507720f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh 5078bb7acecfSBarry Smith - disc - The discretization object 507944a7f3ddSMatthew G. Knepley 508044a7f3ddSMatthew G. Knepley Level: intermediate 508144a7f3ddSMatthew G. Knepley 5082bb7acecfSBarry Smith Notes: 5083bb7acecfSBarry Smith The label already exists or will be added to the `DM` with `DMSetLabel()`. 5084bb7acecfSBarry Smith 5085da81f932SPierre Jolivet For example, a piecewise continuous pressure field can be defined by coefficients at the cell centers of a mesh and piecewise constant functions 5086bb7acecfSBarry Smith within each cell. Thus a specific function in the space is defined by the combination of a `Vec` containing the coefficients, a `DM` defining the 5087bb7acecfSBarry Smith geometry entities, a `DMLabel` indicating a subset of those geometric entities, and a discretization object, such as a `PetscFE`. 5088bb7acecfSBarry Smith 50891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLabel()`, `DMSetField()`, `DMGetField()`, `PetscFE` 509044a7f3ddSMatthew G. Knepley @*/ 5091d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddField(DM dm, DMLabel label, PetscObject disc) 5092d71ae5a4SJacob Faibussowitsch { 509344a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf; 509444a7f3ddSMatthew G. Knepley 509544a7f3ddSMatthew G. Knepley PetscFunctionBegin; 509644a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5097064a246eSJacob Faibussowitsch if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 5098bb7acecfSBarry Smith PetscValidHeader(disc, 3); 50999566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, Nf + 1)); 510044a7f3ddSMatthew G. Knepley dm->fields[Nf].label = label; 5101bb7acecfSBarry Smith dm->fields[Nf].disc = disc; 51029566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 5103835f2295SStefano Zampini PetscCall(PetscObjectReference(disc)); 5104bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, Nf, disc)); 51059566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 51063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5107af122d2aSMatthew G Knepley } 51086636e97aSMatthew G Knepley 5109e5e52638SMatthew G. Knepley /*@ 5110e0b68406SMatthew Knepley DMSetFieldAvoidTensor - Set flag to avoid defining the field on tensor cells 5111e0b68406SMatthew Knepley 511220f4b53cSBarry Smith Logically Collective 5113e0b68406SMatthew Knepley 5114e0b68406SMatthew Knepley Input Parameters: 5115bb7acecfSBarry Smith + dm - The `DM` 5116e0b68406SMatthew Knepley . f - The field index 5117bb7acecfSBarry Smith - avoidTensor - `PETSC_TRUE` to skip defining the field on tensor cells 5118e0b68406SMatthew Knepley 5119e0b68406SMatthew Knepley Level: intermediate 5120e0b68406SMatthew Knepley 51211cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()` 5122e0b68406SMatthew Knepley @*/ 5123d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFieldAvoidTensor(DM dm, PetscInt f, PetscBool avoidTensor) 5124d71ae5a4SJacob Faibussowitsch { 5125e0b68406SMatthew Knepley PetscFunctionBegin; 512663a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5127e0b68406SMatthew Knepley dm->fields[f].avoidTensor = avoidTensor; 51283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5129e0b68406SMatthew Knepley } 5130e0b68406SMatthew Knepley 5131e0b68406SMatthew Knepley /*@ 5132e0b68406SMatthew Knepley DMGetFieldAvoidTensor - Get flag to avoid defining the field on tensor cells 5133e0b68406SMatthew Knepley 513420f4b53cSBarry Smith Not Collective 5135e0b68406SMatthew Knepley 5136e0b68406SMatthew Knepley Input Parameters: 5137bb7acecfSBarry Smith + dm - The `DM` 5138e0b68406SMatthew Knepley - f - The field index 5139e0b68406SMatthew Knepley 5140e0b68406SMatthew Knepley Output Parameter: 5141e0b68406SMatthew Knepley . avoidTensor - The flag to avoid defining the field on tensor cells 5142e0b68406SMatthew Knepley 5143e0b68406SMatthew Knepley Level: intermediate 5144e0b68406SMatthew Knepley 514560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`, `DMGetField()`, `DMSetFieldAvoidTensor()` 5146e0b68406SMatthew Knepley @*/ 5147d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFieldAvoidTensor(DM dm, PetscInt f, PetscBool *avoidTensor) 5148d71ae5a4SJacob Faibussowitsch { 5149e0b68406SMatthew Knepley PetscFunctionBegin; 515063a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5151e0b68406SMatthew Knepley *avoidTensor = dm->fields[f].avoidTensor; 51523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5153e0b68406SMatthew Knepley } 5154e0b68406SMatthew Knepley 5155e0b68406SMatthew Knepley /*@ 5156bb7acecfSBarry Smith DMCopyFields - Copy the discretizations for the `DM` into another `DM` 5157e5e52638SMatthew G. Knepley 515820f4b53cSBarry Smith Collective 5159e5e52638SMatthew G. Knepley 5160bb4b53efSMatthew G. Knepley Input Parameters: 5161bb4b53efSMatthew G. Knepley + dm - The `DM` 5162bb4b53efSMatthew G. Knepley . minDegree - Minimum degree for a discretization, or `PETSC_DETERMINE` for no limit 5163bb4b53efSMatthew G. Knepley - maxDegree - Maximum degree for a discretization, or `PETSC_DETERMINE` for no limit 5164e5e52638SMatthew G. Knepley 5165e5e52638SMatthew G. Knepley Output Parameter: 5166bb7acecfSBarry Smith . newdm - The `DM` 5167e5e52638SMatthew G. Knepley 5168e5e52638SMatthew G. Knepley Level: advanced 5169e5e52638SMatthew G. Knepley 51701cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetField()`, `DMSetField()`, `DMAddField()`, `DMCopyDS()`, `DMGetDS()`, `DMGetCellDS()` 5171e5e52638SMatthew G. Knepley @*/ 5172bb4b53efSMatthew G. Knepley PetscErrorCode DMCopyFields(DM dm, PetscInt minDegree, PetscInt maxDegree, DM newdm) 5173d71ae5a4SJacob Faibussowitsch { 5174e5e52638SMatthew G. Knepley PetscInt Nf, f; 5175e5e52638SMatthew G. Knepley 5176e5e52638SMatthew G. Knepley PetscFunctionBegin; 51773ba16761SJacob Faibussowitsch if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS); 51789566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 51799566063dSJacob Faibussowitsch PetscCall(DMClearFields(newdm)); 5180e5e52638SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5181e5e52638SMatthew G. Knepley DMLabel label; 5182e5e52638SMatthew G. Knepley PetscObject field; 5183bb4b53efSMatthew G. Knepley PetscClassId id; 518434aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 5185e5e52638SMatthew G. Knepley 51869566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, &label, &field)); 5187bb4b53efSMatthew G. Knepley PetscCall(PetscObjectGetClassId(field, &id)); 5188bb4b53efSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 5189bb4b53efSMatthew G. Knepley PetscFE newfe; 5190bb4b53efSMatthew G. Knepley 5191bb4b53efSMatthew G. Knepley PetscCall(PetscFELimitDegree((PetscFE)field, minDegree, maxDegree, &newfe)); 5192bb4b53efSMatthew G. Knepley PetscCall(DMSetField(newdm, f, label, (PetscObject)newfe)); 5193bb4b53efSMatthew G. Knepley PetscCall(PetscFEDestroy(&newfe)); 5194bb4b53efSMatthew G. Knepley } else { 51959566063dSJacob Faibussowitsch PetscCall(DMSetField(newdm, f, label, field)); 5196bb4b53efSMatthew G. Knepley } 51979566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, f, &useCone, &useClosure)); 51989566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(newdm, f, useCone, useClosure)); 519934aa8a36SMatthew G. Knepley } 52003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 520134aa8a36SMatthew G. Knepley } 520234aa8a36SMatthew G. Knepley 520334aa8a36SMatthew G. Knepley /*@ 520434aa8a36SMatthew G. Knepley DMGetAdjacency - Returns the flags for determining variable influence 520534aa8a36SMatthew G. Knepley 520620f4b53cSBarry Smith Not Collective 520734aa8a36SMatthew G. Knepley 520834aa8a36SMatthew G. Knepley Input Parameters: 520920f4b53cSBarry Smith + dm - The `DM` object 521020f4b53cSBarry Smith - f - The field number, or `PETSC_DEFAULT` for the default adjacency 521134aa8a36SMatthew G. Knepley 5212d8d19677SJose E. Roman Output Parameters: 521334aa8a36SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 521434aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 521534aa8a36SMatthew G. Knepley 521634aa8a36SMatthew G. Knepley Level: developer 521734aa8a36SMatthew G. Knepley 521820f4b53cSBarry Smith Notes: 521920f4b53cSBarry Smith .vb 522020f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 522120f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 522220f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 522320f4b53cSBarry Smith .ve 522420f4b53cSBarry Smith Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 522520f4b53cSBarry Smith 52261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetAdjacency()`, `DMGetField()`, `DMSetField()` 522734aa8a36SMatthew G. Knepley @*/ 5228d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAdjacency(DM dm, PetscInt f, PetscBool *useCone, PetscBool *useClosure) 5229d71ae5a4SJacob Faibussowitsch { 523034aa8a36SMatthew G. Knepley PetscFunctionBegin; 523134aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 52324f572ea9SToby Isaac if (useCone) PetscAssertPointer(useCone, 3); 52334f572ea9SToby Isaac if (useClosure) PetscAssertPointer(useClosure, 4); 523434aa8a36SMatthew G. Knepley if (f < 0) { 523534aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->adjacency[0]; 523634aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->adjacency[1]; 523734aa8a36SMatthew G. Knepley } else { 523834aa8a36SMatthew G. Knepley PetscInt Nf; 523934aa8a36SMatthew G. Knepley 52409566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 52417a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 524234aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->fields[f].adjacency[0]; 524334aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->fields[f].adjacency[1]; 524434aa8a36SMatthew G. Knepley } 52453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 524634aa8a36SMatthew G. Knepley } 524734aa8a36SMatthew G. Knepley 524834aa8a36SMatthew G. Knepley /*@ 524934aa8a36SMatthew G. Knepley DMSetAdjacency - Set the flags for determining variable influence 525034aa8a36SMatthew G. Knepley 525120f4b53cSBarry Smith Not Collective 525234aa8a36SMatthew G. Knepley 525334aa8a36SMatthew G. Knepley Input Parameters: 525420f4b53cSBarry Smith + dm - The `DM` object 525534aa8a36SMatthew G. Knepley . f - The field number 525634aa8a36SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 525734aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 525834aa8a36SMatthew G. Knepley 525934aa8a36SMatthew G. Knepley Level: developer 526034aa8a36SMatthew G. Knepley 526120f4b53cSBarry Smith Notes: 526220f4b53cSBarry Smith .vb 526320f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 526420f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 526520f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 526620f4b53cSBarry Smith .ve 526720f4b53cSBarry Smith Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 526820f4b53cSBarry Smith 52691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetAdjacency()`, `DMGetField()`, `DMSetField()` 527034aa8a36SMatthew G. Knepley @*/ 5271d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAdjacency(DM dm, PetscInt f, PetscBool useCone, PetscBool useClosure) 5272d71ae5a4SJacob Faibussowitsch { 527334aa8a36SMatthew G. Knepley PetscFunctionBegin; 527434aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 527534aa8a36SMatthew G. Knepley if (f < 0) { 527634aa8a36SMatthew G. Knepley dm->adjacency[0] = useCone; 527734aa8a36SMatthew G. Knepley dm->adjacency[1] = useClosure; 527834aa8a36SMatthew G. Knepley } else { 527934aa8a36SMatthew G. Knepley PetscInt Nf; 528034aa8a36SMatthew G. Knepley 52819566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 52827a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 528334aa8a36SMatthew G. Knepley dm->fields[f].adjacency[0] = useCone; 528434aa8a36SMatthew G. Knepley dm->fields[f].adjacency[1] = useClosure; 5285e5e52638SMatthew G. Knepley } 52863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5287e5e52638SMatthew G. Knepley } 5288e5e52638SMatthew G. Knepley 5289b0441da4SMatthew G. Knepley /*@ 5290b0441da4SMatthew G. Knepley DMGetBasicAdjacency - Returns the flags for determining variable influence, using either the default or field 0 if it is defined 5291b0441da4SMatthew G. Knepley 5292b0441da4SMatthew G. Knepley Not collective 5293b0441da4SMatthew G. Knepley 5294f899ff85SJose E. Roman Input Parameter: 529520f4b53cSBarry Smith . dm - The `DM` object 5296b0441da4SMatthew G. Knepley 5297d8d19677SJose E. Roman Output Parameters: 5298b0441da4SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 5299b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5300b0441da4SMatthew G. Knepley 5301b0441da4SMatthew G. Knepley Level: developer 5302b0441da4SMatthew G. Knepley 530320f4b53cSBarry Smith Notes: 530420f4b53cSBarry Smith .vb 530520f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 530620f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 530720f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 530820f4b53cSBarry Smith .ve 530920f4b53cSBarry Smith 53101cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5311b0441da4SMatthew G. Knepley @*/ 5312d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasicAdjacency(DM dm, PetscBool *useCone, PetscBool *useClosure) 5313d71ae5a4SJacob Faibussowitsch { 5314b0441da4SMatthew G. Knepley PetscInt Nf; 5315b0441da4SMatthew G. Knepley 5316b0441da4SMatthew G. Knepley PetscFunctionBegin; 5317b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 53184f572ea9SToby Isaac if (useCone) PetscAssertPointer(useCone, 2); 53194f572ea9SToby Isaac if (useClosure) PetscAssertPointer(useClosure, 3); 53209566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5321b0441da4SMatthew G. Knepley if (!Nf) { 53229566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5323b0441da4SMatthew G. Knepley } else { 53249566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, 0, useCone, useClosure)); 5325b0441da4SMatthew G. Knepley } 53263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5327b0441da4SMatthew G. Knepley } 5328b0441da4SMatthew G. Knepley 5329b0441da4SMatthew G. Knepley /*@ 5330b0441da4SMatthew G. Knepley DMSetBasicAdjacency - Set the flags for determining variable influence, using either the default or field 0 if it is defined 5331b0441da4SMatthew G. Knepley 533220f4b53cSBarry Smith Not Collective 5333b0441da4SMatthew G. Knepley 5334b0441da4SMatthew G. Knepley Input Parameters: 533520f4b53cSBarry Smith + dm - The `DM` object 5336b0441da4SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 5337b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5338b0441da4SMatthew G. Knepley 5339b0441da4SMatthew G. Knepley Level: developer 5340b0441da4SMatthew G. Knepley 534120f4b53cSBarry Smith Notes: 534220f4b53cSBarry Smith .vb 534320f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 534420f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 534520f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 534620f4b53cSBarry Smith .ve 534720f4b53cSBarry Smith 53481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5349b0441da4SMatthew G. Knepley @*/ 5350d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetBasicAdjacency(DM dm, PetscBool useCone, PetscBool useClosure) 5351d71ae5a4SJacob Faibussowitsch { 5352b0441da4SMatthew G. Knepley PetscInt Nf; 5353b0441da4SMatthew G. Knepley 5354b0441da4SMatthew G. Knepley PetscFunctionBegin; 5355b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 53569566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5357b0441da4SMatthew G. Knepley if (!Nf) { 53589566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5359b0441da4SMatthew G. Knepley } else { 53609566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, 0, useCone, useClosure)); 5361e5e52638SMatthew G. Knepley } 53623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5363e5e52638SMatthew G. Knepley } 5364e5e52638SMatthew G. Knepley 5365d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompleteBCLabels_Internal(DM dm) 5366d71ae5a4SJacob Faibussowitsch { 5367799db056SMatthew G. Knepley DM plex; 5368799db056SMatthew G. Knepley DMLabel *labels, *glabels; 5369799db056SMatthew G. Knepley const char **names; 5370799db056SMatthew G. Knepley char *sendNames, *recvNames; 5371799db056SMatthew G. Knepley PetscInt Nds, s, maxLabels = 0, maxLen = 0, gmaxLen, Nl = 0, gNl, l, gl, m; 5372799db056SMatthew G. Knepley size_t len; 5373799db056SMatthew G. Knepley MPI_Comm comm; 5374799db056SMatthew G. Knepley PetscMPIInt rank, size, p, *counts, *displs; 5375783e2ec8SMatthew G. Knepley 5376783e2ec8SMatthew G. Knepley PetscFunctionBegin; 5377799db056SMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 5378799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(comm, &size)); 5379799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5380799db056SMatthew G. Knepley PetscCall(DMGetNumDS(dm, &Nds)); 5381799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5382799db056SMatthew G. Knepley PetscDS dsBC; 5383799db056SMatthew G. Knepley PetscInt numBd; 5384799db056SMatthew G. Knepley 538507218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL)); 5386799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5387799db056SMatthew G. Knepley maxLabels += numBd; 5388799db056SMatthew G. Knepley } 5389799db056SMatthew G. Knepley PetscCall(PetscCalloc1(maxLabels, &labels)); 5390799db056SMatthew G. Knepley /* Get list of labels to be completed */ 5391799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5392799db056SMatthew G. Knepley PetscDS dsBC; 5393799db056SMatthew G. Knepley PetscInt numBd, bd; 5394799db056SMatthew G. Knepley 539507218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL)); 5396799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5397799db056SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 5398799db056SMatthew G. Knepley DMLabel label; 5399799db056SMatthew G. Knepley PetscInt field; 5400799db056SMatthew G. Knepley PetscObject obj; 5401799db056SMatthew G. Knepley PetscClassId id; 5402799db056SMatthew G. Knepley 5403799db056SMatthew G. Knepley PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 54049566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 54059566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 5406799db056SMatthew G. Knepley if (!(id == PETSCFE_CLASSID) || !label) continue; 54079371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 54089371c9d4SSatish Balay if (labels[l] == label) break; 5409799db056SMatthew G. Knepley if (l == Nl) labels[Nl++] = label; 5410783e2ec8SMatthew G. Knepley } 5411799db056SMatthew G. Knepley } 5412799db056SMatthew G. Knepley /* Get label names */ 5413799db056SMatthew G. Knepley PetscCall(PetscMalloc1(Nl, &names)); 5414799db056SMatthew G. Knepley for (l = 0; l < Nl; ++l) PetscCall(PetscObjectGetName((PetscObject)labels[l], &names[l])); 54159371c9d4SSatish Balay for (l = 0; l < Nl; ++l) { 54169371c9d4SSatish Balay PetscCall(PetscStrlen(names[l], &len)); 54179371c9d4SSatish Balay maxLen = PetscMax(maxLen, (PetscInt)len + 2); 54189371c9d4SSatish Balay } 5419799db056SMatthew G. Knepley PetscCall(PetscFree(labels)); 5420462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&maxLen, &gmaxLen, 1, MPIU_INT, MPI_MAX, comm)); 5421799db056SMatthew G. Knepley PetscCall(PetscCalloc1(Nl * gmaxLen, &sendNames)); 5422c6a7a370SJeremy L Thompson for (l = 0; l < Nl; ++l) PetscCall(PetscStrncpy(&sendNames[gmaxLen * l], names[l], gmaxLen)); 5423799db056SMatthew G. Knepley PetscCall(PetscFree(names)); 5424799db056SMatthew G. Knepley /* Put all names on all processes */ 5425799db056SMatthew G. Knepley PetscCall(PetscCalloc2(size, &counts, size + 1, &displs)); 5426799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgather(&Nl, 1, MPI_INT, counts, 1, MPI_INT, comm)); 5427799db056SMatthew G. Knepley for (p = 0; p < size; ++p) displs[p + 1] = displs[p] + counts[p]; 5428799db056SMatthew G. Knepley gNl = displs[size]; 54299371c9d4SSatish Balay for (p = 0; p < size; ++p) { 54309371c9d4SSatish Balay counts[p] *= gmaxLen; 54319371c9d4SSatish Balay displs[p] *= gmaxLen; 54329371c9d4SSatish Balay } 5433799db056SMatthew G. Knepley PetscCall(PetscCalloc2(gNl * gmaxLen, &recvNames, gNl, &glabels)); 5434799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgatherv(sendNames, counts[rank], MPI_CHAR, recvNames, counts, displs, MPI_CHAR, comm)); 5435799db056SMatthew G. Knepley PetscCall(PetscFree2(counts, displs)); 5436799db056SMatthew G. Knepley PetscCall(PetscFree(sendNames)); 5437799db056SMatthew G. Knepley for (l = 0, gl = 0; l < gNl; ++l) { 5438799db056SMatthew G. Knepley PetscCall(DMGetLabel(dm, &recvNames[l * gmaxLen], &glabels[gl])); 5439799db056SMatthew G. Knepley PetscCheck(glabels[gl], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Label %s missing on rank %d", &recvNames[l * gmaxLen], rank); 54409371c9d4SSatish Balay for (m = 0; m < gl; ++m) 54415d6b2bfcSJames Wright if (glabels[m] == glabels[gl]) goto next_label; 54429566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 5443799db056SMatthew G. Knepley PetscCall(DMPlexLabelComplete(plex, glabels[gl])); 54449566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 5445799db056SMatthew G. Knepley ++gl; 54465d6b2bfcSJames Wright next_label: 54475d6b2bfcSJames Wright continue; 5448783e2ec8SMatthew G. Knepley } 5449799db056SMatthew G. Knepley PetscCall(PetscFree2(recvNames, glabels)); 54503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5451783e2ec8SMatthew G. Knepley } 5452783e2ec8SMatthew G. Knepley 5453d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDSEnlarge_Static(DM dm, PetscInt NdsNew) 5454d71ae5a4SJacob Faibussowitsch { 5455e5e52638SMatthew G. Knepley DMSpace *tmpd; 5456e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5457e5e52638SMatthew G. Knepley 5458e5e52638SMatthew G. Knepley PetscFunctionBegin; 54593ba16761SJacob Faibussowitsch if (Nds >= NdsNew) PetscFunctionReturn(PETSC_SUCCESS); 54609566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NdsNew, &tmpd)); 5461e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) tmpd[s] = dm->probs[s]; 54629371c9d4SSatish Balay for (s = Nds; s < NdsNew; ++s) { 54639371c9d4SSatish Balay tmpd[s].ds = NULL; 54649371c9d4SSatish Balay tmpd[s].label = NULL; 54659371c9d4SSatish Balay tmpd[s].fields = NULL; 54669371c9d4SSatish Balay } 54679566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5468e5e52638SMatthew G. Knepley dm->Nds = NdsNew; 5469e5e52638SMatthew G. Knepley dm->probs = tmpd; 54703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5471e5e52638SMatthew G. Knepley } 5472e5e52638SMatthew G. Knepley 5473e5e52638SMatthew G. Knepley /*@ 547420f4b53cSBarry Smith DMGetNumDS - Get the number of discrete systems in the `DM` 5475e5e52638SMatthew G. Knepley 547620f4b53cSBarry Smith Not Collective 5477e5e52638SMatthew G. Knepley 5478e5e52638SMatthew G. Knepley Input Parameter: 547920f4b53cSBarry Smith . dm - The `DM` 5480e5e52638SMatthew G. Knepley 5481e5e52638SMatthew G. Knepley Output Parameter: 548220f4b53cSBarry Smith . Nds - The number of `PetscDS` objects 5483e5e52638SMatthew G. Knepley 5484e5e52638SMatthew G. Knepley Level: intermediate 5485e5e52638SMatthew G. Knepley 54861cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMGetCellDS()` 5487e5e52638SMatthew G. Knepley @*/ 5488d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumDS(DM dm, PetscInt *Nds) 5489d71ae5a4SJacob Faibussowitsch { 5490e5e52638SMatthew G. Knepley PetscFunctionBegin; 5491e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 54924f572ea9SToby Isaac PetscAssertPointer(Nds, 2); 5493e5e52638SMatthew G. Knepley *Nds = dm->Nds; 54943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5495e5e52638SMatthew G. Knepley } 5496e5e52638SMatthew G. Knepley 5497e5e52638SMatthew G. Knepley /*@ 549820f4b53cSBarry Smith DMClearDS - Remove all discrete systems from the `DM` 5499e5e52638SMatthew G. Knepley 550020f4b53cSBarry Smith Logically Collective 5501e5e52638SMatthew G. Knepley 5502e5e52638SMatthew G. Knepley Input Parameter: 550320f4b53cSBarry Smith . dm - The `DM` 5504e5e52638SMatthew G. Knepley 5505e5e52638SMatthew G. Knepley Level: intermediate 5506e5e52638SMatthew G. Knepley 55071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumDS()`, `DMGetDS()`, `DMSetField()` 5508e5e52638SMatthew G. Knepley @*/ 5509d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearDS(DM dm) 5510d71ae5a4SJacob Faibussowitsch { 5511e5e52638SMatthew G. Knepley PetscInt s; 5512e5e52638SMatthew G. Knepley 5513e5e52638SMatthew G. Knepley PetscFunctionBegin; 5514e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5515e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 55169566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 551707218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[s].dsIn)); 55189566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[s].label)); 55199566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[s].fields)); 5520e5e52638SMatthew G. Knepley } 55219566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5522e5e52638SMatthew G. Knepley dm->probs = NULL; 5523e5e52638SMatthew G. Knepley dm->Nds = 0; 55243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5525e5e52638SMatthew G. Knepley } 5526e5e52638SMatthew G. Knepley 5527e5e52638SMatthew G. Knepley /*@ 552820f4b53cSBarry Smith DMGetDS - Get the default `PetscDS` 5529e5e52638SMatthew G. Knepley 553020f4b53cSBarry Smith Not Collective 5531e5e52638SMatthew G. Knepley 5532e5e52638SMatthew G. Knepley Input Parameter: 553320f4b53cSBarry Smith . dm - The `DM` 5534e5e52638SMatthew G. Knepley 5535e5e52638SMatthew G. Knepley Output Parameter: 553607218a29SMatthew G. Knepley . ds - The default `PetscDS` 5537e5e52638SMatthew G. Knepley 5538e5e52638SMatthew G. Knepley Level: intermediate 5539e5e52638SMatthew G. Knepley 55401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCellDS()`, `DMGetRegionDS()` 5541e5e52638SMatthew G. Knepley @*/ 554207218a29SMatthew G. Knepley PetscErrorCode DMGetDS(DM dm, PetscDS *ds) 5543d71ae5a4SJacob Faibussowitsch { 5544e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5545e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 55464f572ea9SToby Isaac PetscAssertPointer(ds, 2); 554707218a29SMatthew G. Knepley PetscCheck(dm->Nds > 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Need to call DMCreateDS() before calling DMGetDS()"); 554807218a29SMatthew G. Knepley *ds = dm->probs[0].ds; 55493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5550e5e52638SMatthew G. Knepley } 5551e5e52638SMatthew G. Knepley 5552e5e52638SMatthew G. Knepley /*@ 555320f4b53cSBarry Smith DMGetCellDS - Get the `PetscDS` defined on a given cell 5554e5e52638SMatthew G. Knepley 555520f4b53cSBarry Smith Not Collective 5556e5e52638SMatthew G. Knepley 5557e5e52638SMatthew G. Knepley Input Parameters: 555820f4b53cSBarry Smith + dm - The `DM` 555920f4b53cSBarry Smith - point - Cell for the `PetscDS` 5560e5e52638SMatthew G. Knepley 556107218a29SMatthew G. Knepley Output Parameters: 556207218a29SMatthew G. Knepley + ds - The `PetscDS` defined on the given cell 556307218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or NULL if the same ds 5564e5e52638SMatthew G. Knepley 5565e5e52638SMatthew G. Knepley Level: developer 5566e5e52638SMatthew G. Knepley 55671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMSetRegionDS()` 5568e5e52638SMatthew G. Knepley @*/ 556907218a29SMatthew G. Knepley PetscErrorCode DMGetCellDS(DM dm, PetscInt point, PetscDS *ds, PetscDS *dsIn) 5570d71ae5a4SJacob Faibussowitsch { 557107218a29SMatthew G. Knepley PetscDS dsDef = NULL; 5572e5e52638SMatthew G. Knepley PetscInt s; 5573e5e52638SMatthew G. Knepley 5574e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5575e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 55764f572ea9SToby Isaac if (ds) PetscAssertPointer(ds, 3); 55774f572ea9SToby Isaac if (dsIn) PetscAssertPointer(dsIn, 4); 557863a3b9bcSJacob Faibussowitsch PetscCheck(point >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Mesh point cannot be negative: %" PetscInt_FMT, point); 557907218a29SMatthew G. Knepley if (ds) *ds = NULL; 558007218a29SMatthew G. Knepley if (dsIn) *dsIn = NULL; 5581e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 5582e5e52638SMatthew G. Knepley PetscInt val; 5583e5e52638SMatthew G. Knepley 55849371c9d4SSatish Balay if (!dm->probs[s].label) { 558507218a29SMatthew G. Knepley dsDef = dm->probs[s].ds; 55869371c9d4SSatish Balay } else { 55879566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(dm->probs[s].label, point, &val)); 55889371c9d4SSatish Balay if (val >= 0) { 558907218a29SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 559007218a29SMatthew G. Knepley if (dsIn) *dsIn = dm->probs[s].dsIn; 55919371c9d4SSatish Balay break; 55929371c9d4SSatish Balay } 5593e5e52638SMatthew G. Knepley } 5594e5e52638SMatthew G. Knepley } 559507218a29SMatthew G. Knepley if (ds && !*ds) *ds = dsDef; 55963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5597e5e52638SMatthew G. Knepley } 5598e5e52638SMatthew G. Knepley 5599e5e52638SMatthew G. Knepley /*@ 560020f4b53cSBarry Smith DMGetRegionDS - Get the `PetscDS` for a given mesh region, defined by a `DMLabel` 5601e5e52638SMatthew G. Knepley 560220f4b53cSBarry Smith Not Collective 5603e5e52638SMatthew G. Knepley 5604e5e52638SMatthew G. Knepley Input Parameters: 560520f4b53cSBarry Smith + dm - The `DM` 560620f4b53cSBarry Smith - label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh 5607e5e52638SMatthew G. Knepley 5608b3cf3223SMatthew G. Knepley Output Parameters: 560920f4b53cSBarry Smith + fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` 561007218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` 561107218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input in the given region, or `NULL` 5612e5e52638SMatthew G. Knepley 5613e5e52638SMatthew G. Knepley Level: advanced 5614e5e52638SMatthew G. Knepley 561520f4b53cSBarry Smith Note: 561620f4b53cSBarry Smith If a non-`NULL` label is given, but there is no `PetscDS` on that specific label, 561720f4b53cSBarry Smith the `PetscDS` for the full domain (if present) is returned. Returns with 561807218a29SMatthew G. Knepley fields = `NULL` and ds = `NULL` if there is no `PetscDS` for the full domain. 561920f4b53cSBarry Smith 56201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5621e5e52638SMatthew G. Knepley @*/ 562207218a29SMatthew G. Knepley PetscErrorCode DMGetRegionDS(DM dm, DMLabel label, IS *fields, PetscDS *ds, PetscDS *dsIn) 5623d71ae5a4SJacob Faibussowitsch { 5624e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5625e5e52638SMatthew G. Knepley 5626e5e52638SMatthew G. Knepley PetscFunctionBegin; 5627e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5628e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 56299371c9d4SSatish Balay if (fields) { 56304f572ea9SToby Isaac PetscAssertPointer(fields, 3); 56319371c9d4SSatish Balay *fields = NULL; 56329371c9d4SSatish Balay } 56339371c9d4SSatish Balay if (ds) { 56344f572ea9SToby Isaac PetscAssertPointer(ds, 4); 56359371c9d4SSatish Balay *ds = NULL; 56369371c9d4SSatish Balay } 563707218a29SMatthew G. Knepley if (dsIn) { 56384f572ea9SToby Isaac PetscAssertPointer(dsIn, 5); 563907218a29SMatthew G. Knepley *dsIn = NULL; 564007218a29SMatthew G. Knepley } 5641e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5642154ca461SJed Brown if (dm->probs[s].label == label || !dm->probs[s].label) { 5643b3cf3223SMatthew G. Knepley if (fields) *fields = dm->probs[s].fields; 5644b3cf3223SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 564507218a29SMatthew G. Knepley if (dsIn) *dsIn = dm->probs[s].dsIn; 56463ba16761SJacob Faibussowitsch if (dm->probs[s].label) PetscFunctionReturn(PETSC_SUCCESS); 5647b3cf3223SMatthew G. Knepley } 5648e5e52638SMatthew G. Knepley } 56493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5650e5e52638SMatthew G. Knepley } 5651e5e52638SMatthew G. Knepley 5652e5e52638SMatthew G. Knepley /*@ 5653bb7acecfSBarry Smith DMSetRegionDS - Set the `PetscDS` for a given mesh region, defined by a `DMLabel` 5654083401c6SMatthew G. Knepley 565520f4b53cSBarry Smith Collective 5656083401c6SMatthew G. Knepley 5657083401c6SMatthew G. Knepley Input Parameters: 5658bb7acecfSBarry Smith + dm - The `DM` 565920f4b53cSBarry Smith . label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh 566007218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` for all fields 566107218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region 566207218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS` 5663083401c6SMatthew G. Knepley 566420f4b53cSBarry Smith Level: advanced 566520f4b53cSBarry Smith 5666bb7acecfSBarry Smith Note: 5667bb7acecfSBarry Smith If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`. If the `PetscDS` is replaced, 5668083401c6SMatthew G. Knepley the fields argument is ignored. 5669083401c6SMatthew G. Knepley 56701cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionNumDS()`, `DMGetDS()`, `DMGetCellDS()` 5671083401c6SMatthew G. Knepley @*/ 567207218a29SMatthew G. Knepley PetscErrorCode DMSetRegionDS(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 5673d71ae5a4SJacob Faibussowitsch { 5674083401c6SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5675083401c6SMatthew G. Knepley 5676083401c6SMatthew G. Knepley PetscFunctionBegin; 5677083401c6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5678083401c6SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 567907218a29SMatthew G. Knepley if (fields) PetscValidHeaderSpecific(fields, IS_CLASSID, 3); 5680064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 4); 568107218a29SMatthew G. Knepley if (dsIn) PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 5); 5682083401c6SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5683083401c6SMatthew G. Knepley if (dm->probs[s].label == label) { 56849566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 568507218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[s].dsIn)); 5686083401c6SMatthew G. Knepley dm->probs[s].ds = ds; 568707218a29SMatthew G. Knepley dm->probs[s].dsIn = dsIn; 56883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5689083401c6SMatthew G. Knepley } 5690083401c6SMatthew G. Knepley } 56919566063dSJacob Faibussowitsch PetscCall(DMDSEnlarge_Static(dm, Nds + 1)); 56929566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 56939566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 56949566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 569507218a29SMatthew G. Knepley PetscCall(PetscObjectReference((PetscObject)dsIn)); 5696083401c6SMatthew G. Knepley if (!label) { 5697083401c6SMatthew G. Knepley /* Put the NULL label at the front, so it is returned as the default */ 5698083401c6SMatthew G. Knepley for (s = Nds - 1; s >= 0; --s) dm->probs[s + 1] = dm->probs[s]; 5699083401c6SMatthew G. Knepley Nds = 0; 5700083401c6SMatthew G. Knepley } 5701083401c6SMatthew G. Knepley dm->probs[Nds].label = label; 5702083401c6SMatthew G. Knepley dm->probs[Nds].fields = fields; 5703083401c6SMatthew G. Knepley dm->probs[Nds].ds = ds; 570407218a29SMatthew G. Knepley dm->probs[Nds].dsIn = dsIn; 57053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5706083401c6SMatthew G. Knepley } 5707083401c6SMatthew G. Knepley 5708083401c6SMatthew G. Knepley /*@ 570920f4b53cSBarry Smith DMGetRegionNumDS - Get the `PetscDS` for a given mesh region, defined by the region number 5710e5e52638SMatthew G. Knepley 571120f4b53cSBarry Smith Not Collective 5712e5e52638SMatthew G. Knepley 5713e5e52638SMatthew G. Knepley Input Parameters: 571420f4b53cSBarry Smith + dm - The `DM` 5715e5e52638SMatthew G. Knepley - num - The region number, in [0, Nds) 5716e5e52638SMatthew G. Knepley 5717e5e52638SMatthew G. Knepley Output Parameters: 571820f4b53cSBarry Smith + label - The region label, or `NULL` 571920f4b53cSBarry Smith . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` 572007218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` 572107218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input in the given region, or `NULL` 5722e5e52638SMatthew G. Knepley 5723e5e52638SMatthew G. Knepley Level: advanced 5724e5e52638SMatthew G. Knepley 57251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5726e5e52638SMatthew G. Knepley @*/ 572707218a29SMatthew G. Knepley PetscErrorCode DMGetRegionNumDS(DM dm, PetscInt num, DMLabel *label, IS *fields, PetscDS *ds, PetscDS *dsIn) 5728d71ae5a4SJacob Faibussowitsch { 5729e5e52638SMatthew G. Knepley PetscInt Nds; 5730e5e52638SMatthew G. Knepley 5731e5e52638SMatthew G. Knepley PetscFunctionBegin; 5732e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 57339566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 573463a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 5735e5e52638SMatthew G. Knepley if (label) { 57364f572ea9SToby Isaac PetscAssertPointer(label, 3); 5737e5e52638SMatthew G. Knepley *label = dm->probs[num].label; 5738e5e52638SMatthew G. Knepley } 5739b3cf3223SMatthew G. Knepley if (fields) { 57404f572ea9SToby Isaac PetscAssertPointer(fields, 4); 5741b3cf3223SMatthew G. Knepley *fields = dm->probs[num].fields; 5742b3cf3223SMatthew G. Knepley } 5743e5e52638SMatthew G. Knepley if (ds) { 57444f572ea9SToby Isaac PetscAssertPointer(ds, 5); 5745e5e52638SMatthew G. Knepley *ds = dm->probs[num].ds; 5746e5e52638SMatthew G. Knepley } 574707218a29SMatthew G. Knepley if (dsIn) { 57484f572ea9SToby Isaac PetscAssertPointer(dsIn, 6); 574907218a29SMatthew G. Knepley *dsIn = dm->probs[num].dsIn; 575007218a29SMatthew G. Knepley } 57513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5752e5e52638SMatthew G. Knepley } 5753e5e52638SMatthew G. Knepley 5754e5e52638SMatthew G. Knepley /*@ 575520f4b53cSBarry Smith DMSetRegionNumDS - Set the `PetscDS` for a given mesh region, defined by the region number 5756e5e52638SMatthew G. Knepley 575720f4b53cSBarry Smith Not Collective 5758e5e52638SMatthew G. Knepley 5759e5e52638SMatthew G. Knepley Input Parameters: 576020f4b53cSBarry Smith + dm - The `DM` 5761083401c6SMatthew G. Knepley . num - The region number, in [0, Nds) 576220f4b53cSBarry Smith . label - The region label, or `NULL` 576307218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` to prevent setting 576407218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` to prevent setting 576507218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS` 5766e5e52638SMatthew G. Knepley 5767e5e52638SMatthew G. Knepley Level: advanced 5768e5e52638SMatthew G. Knepley 57691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5770e5e52638SMatthew G. Knepley @*/ 577107218a29SMatthew G. Knepley PetscErrorCode DMSetRegionNumDS(DM dm, PetscInt num, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 5772d71ae5a4SJacob Faibussowitsch { 5773083401c6SMatthew G. Knepley PetscInt Nds; 5774e5e52638SMatthew G. Knepley 5775e5e52638SMatthew G. Knepley PetscFunctionBegin; 5776e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5777ad540459SPierre Jolivet if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 57789566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 577963a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 57809566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 57819566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[num].label)); 5782083401c6SMatthew G. Knepley dm->probs[num].label = label; 5783083401c6SMatthew G. Knepley if (fields) { 5784083401c6SMatthew G. Knepley PetscValidHeaderSpecific(fields, IS_CLASSID, 4); 57859566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 57869566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[num].fields)); 5787083401c6SMatthew G. Knepley dm->probs[num].fields = fields; 5788e5e52638SMatthew G. Knepley } 5789083401c6SMatthew G. Knepley if (ds) { 5790083401c6SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 5); 57919566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 57929566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[num].ds)); 5793083401c6SMatthew G. Knepley dm->probs[num].ds = ds; 5794083401c6SMatthew G. Knepley } 579507218a29SMatthew G. Knepley if (dsIn) { 579607218a29SMatthew G. Knepley PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 6); 579707218a29SMatthew G. Knepley PetscCall(PetscObjectReference((PetscObject)dsIn)); 579807218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[num].dsIn)); 579907218a29SMatthew G. Knepley dm->probs[num].dsIn = dsIn; 580007218a29SMatthew G. Knepley } 58013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5802e5e52638SMatthew G. Knepley } 5803e5e52638SMatthew G. Knepley 5804e5e52638SMatthew G. Knepley /*@ 580520f4b53cSBarry Smith DMFindRegionNum - Find the region number for a given `PetscDS`, or -1 if it is not found. 58061d3af9e0SMatthew G. Knepley 580720f4b53cSBarry Smith Not Collective 58081d3af9e0SMatthew G. Knepley 58091d3af9e0SMatthew G. Knepley Input Parameters: 581020f4b53cSBarry Smith + dm - The `DM` 581120f4b53cSBarry Smith - ds - The `PetscDS` defined on the given region 58121d3af9e0SMatthew G. Knepley 58131d3af9e0SMatthew G. Knepley Output Parameter: 58141d3af9e0SMatthew G. Knepley . num - The region number, in [0, Nds), or -1 if not found 58151d3af9e0SMatthew G. Knepley 58161d3af9e0SMatthew G. Knepley Level: advanced 58171d3af9e0SMatthew G. Knepley 58181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 58191d3af9e0SMatthew G. Knepley @*/ 5820d71ae5a4SJacob Faibussowitsch PetscErrorCode DMFindRegionNum(DM dm, PetscDS ds, PetscInt *num) 5821d71ae5a4SJacob Faibussowitsch { 58221d3af9e0SMatthew G. Knepley PetscInt Nds, n; 58231d3af9e0SMatthew G. Knepley 58241d3af9e0SMatthew G. Knepley PetscFunctionBegin; 58251d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 58261d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 2); 58274f572ea9SToby Isaac PetscAssertPointer(num, 3); 58289566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 58299371c9d4SSatish Balay for (n = 0; n < Nds; ++n) 58309371c9d4SSatish Balay if (ds == dm->probs[n].ds) break; 58311d3af9e0SMatthew G. Knepley if (n >= Nds) *num = -1; 58321d3af9e0SMatthew G. Knepley else *num = n; 58333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58341d3af9e0SMatthew G. Knepley } 58351d3af9e0SMatthew G. Knepley 5836cc4c1da9SBarry Smith /*@ 5837bb7acecfSBarry Smith DMCreateFEDefault - Create a `PetscFE` based on the celltype for the mesh 58382df84da0SMatthew G. Knepley 583920f4b53cSBarry Smith Not Collective 58402df84da0SMatthew G. Knepley 5841f1a722f8SMatthew G. Knepley Input Parameters: 5842bb7acecfSBarry Smith + dm - The `DM` 58432df84da0SMatthew G. Knepley . Nc - The number of components for the field 584420f4b53cSBarry Smith . prefix - The options prefix for the output `PetscFE`, or `NULL` 5845bb7acecfSBarry Smith - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree 58462df84da0SMatthew G. Knepley 58472df84da0SMatthew G. Knepley Output Parameter: 5848bb7acecfSBarry Smith . fem - The `PetscFE` 58492df84da0SMatthew G. Knepley 585020f4b53cSBarry Smith Level: intermediate 585120f4b53cSBarry Smith 5852bb7acecfSBarry Smith Note: 5853bb7acecfSBarry Smith This is a convenience method that just calls `PetscFECreateByCell()` underneath. 58542df84da0SMatthew G. Knepley 58551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscFECreateByCell()`, `DMAddField()`, `DMCreateDS()`, `DMGetCellDS()`, `DMGetRegionDS()` 58562df84da0SMatthew G. Knepley @*/ 5857d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFEDefault(DM dm, PetscInt Nc, const char prefix[], PetscInt qorder, PetscFE *fem) 5858d71ae5a4SJacob Faibussowitsch { 58592df84da0SMatthew G. Knepley DMPolytopeType ct; 58602df84da0SMatthew G. Knepley PetscInt dim, cStart; 58612df84da0SMatthew G. Knepley 58622df84da0SMatthew G. Knepley PetscFunctionBegin; 58632df84da0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 58642df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 2); 58654f572ea9SToby Isaac if (prefix) PetscAssertPointer(prefix, 3); 58662df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, qorder, 4); 58674f572ea9SToby Isaac PetscAssertPointer(fem, 5); 58689566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 58699566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 58709566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 58719566063dSJacob Faibussowitsch PetscCall(PetscFECreateByCell(PETSC_COMM_SELF, dim, Nc, ct, prefix, qorder, fem)); 58723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58732df84da0SMatthew G. Knepley } 58742df84da0SMatthew G. Knepley 58751d3af9e0SMatthew G. Knepley /*@ 5876bb7acecfSBarry Smith DMCreateDS - Create the discrete systems for the `DM` based upon the fields added to the `DM` 5877e5e52638SMatthew G. Knepley 587820f4b53cSBarry Smith Collective 5879e5e52638SMatthew G. Knepley 5880e5e52638SMatthew G. Knepley Input Parameter: 5881bb7acecfSBarry Smith . dm - The `DM` 5882e5e52638SMatthew G. Knepley 588320f4b53cSBarry Smith Options Database Key: 5884bb7acecfSBarry Smith . -dm_petscds_view - View all the `PetscDS` objects in this `DM` 588545480ffeSMatthew G. Knepley 588620f4b53cSBarry Smith Level: intermediate 588720f4b53cSBarry Smith 58881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetField`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 5889e5e52638SMatthew G. Knepley @*/ 5890d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDS(DM dm) 5891d71ae5a4SJacob Faibussowitsch { 5892e5e52638SMatthew G. Knepley MPI_Comm comm; 5893083401c6SMatthew G. Knepley PetscDS dsDef; 5894083401c6SMatthew G. Knepley DMLabel *labelSet; 5895f9244615SMatthew G. Knepley PetscInt dE, Nf = dm->Nf, f, s, Nl, l, Ndef, k; 5896f9244615SMatthew G. Knepley PetscBool doSetup = PETSC_TRUE, flg; 5897e5e52638SMatthew G. Knepley 5898e5e52638SMatthew G. Knepley PetscFunctionBegin; 5899e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 59003ba16761SJacob Faibussowitsch if (!dm->fields) PetscFunctionReturn(PETSC_SUCCESS); 59019566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 59029566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dE)); 5903083401c6SMatthew G. Knepley /* Determine how many regions we have */ 59049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nf, &labelSet)); 5905083401c6SMatthew G. Knepley Nl = 0; 5906083401c6SMatthew G. Knepley Ndef = 0; 5907083401c6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5908083401c6SMatthew G. Knepley DMLabel label = dm->fields[f].label; 5909083401c6SMatthew G. Knepley PetscInt l; 5910083401c6SMatthew G. Knepley 5911f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 5912f918ec44SMatthew G. Knepley /* Move CEED context to discretizations */ 5913f918ec44SMatthew G. Knepley { 5914f918ec44SMatthew G. Knepley PetscClassId id; 5915f918ec44SMatthew G. Knepley 59169566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(dm->fields[f].disc, &id)); 5917f918ec44SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 5918f918ec44SMatthew G. Knepley Ceed ceed; 5919f918ec44SMatthew G. Knepley 59209566063dSJacob Faibussowitsch PetscCall(DMGetCeed(dm, &ceed)); 59219566063dSJacob Faibussowitsch PetscCall(PetscFESetCeed((PetscFE)dm->fields[f].disc, ceed)); 5922f918ec44SMatthew G. Knepley } 5923f918ec44SMatthew G. Knepley } 5924f918ec44SMatthew G. Knepley #endif 59259371c9d4SSatish Balay if (!label) { 59269371c9d4SSatish Balay ++Ndef; 59279371c9d4SSatish Balay continue; 59289371c9d4SSatish Balay } 59299371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 59309371c9d4SSatish Balay if (label == labelSet[l]) break; 5931083401c6SMatthew G. Knepley if (l < Nl) continue; 5932083401c6SMatthew G. Knepley labelSet[Nl++] = label; 5933083401c6SMatthew G. Knepley } 5934083401c6SMatthew G. Knepley /* Create default DS if there are no labels to intersect with */ 593507218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL)); 5936083401c6SMatthew G. Knepley if (!dsDef && Ndef && !Nl) { 5937b3cf3223SMatthew G. Knepley IS fields; 5938b3cf3223SMatthew G. Knepley PetscInt *fld, nf; 5939b3cf3223SMatthew G. Knepley 59409371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59419371c9d4SSatish Balay if (!dm->fields[f].label) ++nf; 59427a8be351SBarry Smith PetscCheck(nf, comm, PETSC_ERR_PLIB, "All fields have labels, but we are trying to create a default DS"); 59439566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 59449371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59459371c9d4SSatish Balay if (!dm->fields[f].label) fld[nf++] = f; 59469566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 59479566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 59489566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 59499566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 595088f0c812SMatthew G. Knepley 59519566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 595207218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, NULL, fields, dsDef, NULL)); 59539566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 59549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fields)); 59552df9ee95SMatthew G. Knepley } 595607218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL)); 59579566063dSJacob Faibussowitsch if (dsDef) PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 5958083401c6SMatthew G. Knepley /* Intersect labels with default fields */ 5959083401c6SMatthew G. Knepley if (Ndef && Nl) { 59600122748bSMatthew G. Knepley DM plex; 5961083401c6SMatthew G. Knepley DMLabel cellLabel; 5962083401c6SMatthew G. Knepley IS fieldIS, allcellIS, defcellIS = NULL; 5963083401c6SMatthew G. Knepley PetscInt *fields; 5964083401c6SMatthew G. Knepley const PetscInt *cells; 5965083401c6SMatthew G. Knepley PetscInt depth, nf = 0, n, c; 59660122748bSMatthew G. Knepley 59679566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 59689566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(plex, &depth)); 59699566063dSJacob Faibussowitsch PetscCall(DMGetStratumIS(plex, "dim", depth, &allcellIS)); 59709566063dSJacob Faibussowitsch if (!allcellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &allcellIS)); 59715fedec97SMatthew G. Knepley /* TODO This looks like it only works for one label */ 5972083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 5973083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 5974083401c6SMatthew G. Knepley IS pointIS; 5975083401c6SMatthew G. Knepley 59769566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 59779566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, 1, &pointIS)); 59789566063dSJacob Faibussowitsch PetscCall(ISDifference(allcellIS, pointIS, &defcellIS)); 59799566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 5980083401c6SMatthew G. Knepley } 59819566063dSJacob Faibussowitsch PetscCall(ISDestroy(&allcellIS)); 5982083401c6SMatthew G. Knepley 59839566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "defaultCells", &cellLabel)); 59849566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(defcellIS, &n)); 59859566063dSJacob Faibussowitsch PetscCall(ISGetIndices(defcellIS, &cells)); 59869566063dSJacob Faibussowitsch for (c = 0; c < n; ++c) PetscCall(DMLabelSetValue(cellLabel, cells[c], 1)); 59879566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(defcellIS, &cells)); 59889566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 59899566063dSJacob Faibussowitsch PetscCall(DMPlexLabelComplete(plex, cellLabel)); 5990083401c6SMatthew G. Knepley 59919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ndef, &fields)); 59929371c9d4SSatish Balay for (f = 0; f < Nf; ++f) 59939371c9d4SSatish Balay if (!dm->fields[f].label) fields[nf++] = f; 59949566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fieldIS)); 59959566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fieldIS, "dm_fields_")); 59969566063dSJacob Faibussowitsch PetscCall(ISSetType(fieldIS, ISGENERAL)); 59979566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fieldIS, nf, fields, PETSC_OWN_POINTER)); 5998083401c6SMatthew G. Knepley 59999566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 600007218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, cellLabel, fieldIS, dsDef, NULL)); 60019566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 60029566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&cellLabel)); 60039566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 60049566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fieldIS)); 60059566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 6006083401c6SMatthew G. Knepley } 6007083401c6SMatthew G. Knepley /* Create label DSes 6008083401c6SMatthew G. Knepley - WE ONLY SUPPORT IDENTICAL OR DISJOINT LABELS 6009083401c6SMatthew G. Knepley */ 6010083401c6SMatthew G. Knepley /* TODO Should check that labels are disjoint */ 6011083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 6012083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 601307218a29SMatthew G. Knepley PetscDS ds, dsIn = NULL; 6014083401c6SMatthew G. Knepley IS fields; 6015083401c6SMatthew G. Knepley PetscInt *fld, nf; 6016083401c6SMatthew G. Knepley 60179566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 60189371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 60199371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) ++nf; 60209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 60219371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 60229371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) fld[nf++] = f; 60239566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 60249566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 60259566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 60269566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 60279566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(ds, dE)); 6028083401c6SMatthew G. Knepley { 6029083401c6SMatthew G. Knepley DMPolytopeType ct; 6030083401c6SMatthew G. Knepley PetscInt lStart, lEnd; 60315fedec97SMatthew G. Knepley PetscBool isCohesiveLocal = PETSC_FALSE, isCohesive; 60320122748bSMatthew G. Knepley 60339566063dSJacob Faibussowitsch PetscCall(DMLabelGetBounds(label, &lStart, &lEnd)); 6034665f567fSMatthew G. Knepley if (lStart >= 0) { 60359566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, lStart, &ct)); 6036412e9a14SMatthew G. Knepley switch (ct) { 6037412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 6038412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 6039412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 6040d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_QUAD_PRISM_TENSOR: 6041d71ae5a4SJacob Faibussowitsch isCohesiveLocal = PETSC_TRUE; 6042d71ae5a4SJacob Faibussowitsch break; 6043d71ae5a4SJacob Faibussowitsch default: 6044d71ae5a4SJacob Faibussowitsch break; 6045412e9a14SMatthew G. Knepley } 6046665f567fSMatthew G. Knepley } 6047462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&isCohesiveLocal, &isCohesive, 1, MPIU_BOOL, MPI_LOR, comm)); 604807218a29SMatthew G. Knepley if (isCohesive) { 604907218a29SMatthew G. Knepley PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsIn)); 605007218a29SMatthew G. Knepley PetscCall(PetscDSSetCoordinateDimension(dsIn, dE)); 605107218a29SMatthew G. Knepley } 60525fedec97SMatthew G. Knepley for (f = 0, nf = 0; f < Nf; ++f) { 60535fedec97SMatthew G. Knepley if (label == dm->fields[f].label || !dm->fields[f].label) { 60545fedec97SMatthew G. Knepley if (label == dm->fields[f].label) { 60559566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, nf, NULL)); 60569566063dSJacob Faibussowitsch PetscCall(PetscDSSetCohesive(ds, nf, isCohesive)); 605707218a29SMatthew G. Knepley if (dsIn) { 605807218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, nf, NULL)); 605907218a29SMatthew G. Knepley PetscCall(PetscDSSetCohesive(dsIn, nf, isCohesive)); 606007218a29SMatthew G. Knepley } 60615fedec97SMatthew G. Knepley } 60625fedec97SMatthew G. Knepley ++nf; 60635fedec97SMatthew G. Knepley } 60645fedec97SMatthew G. Knepley } 6065e5e52638SMatthew G. Knepley } 606607218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, label, fields, ds, dsIn)); 606707218a29SMatthew G. Knepley PetscCall(ISDestroy(&fields)); 60689566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 606907218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dsIn)); 6070e5e52638SMatthew G. Knepley } 60719566063dSJacob Faibussowitsch PetscCall(PetscFree(labelSet)); 6072e5e52638SMatthew G. Knepley /* Set fields in DSes */ 6073083401c6SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 6074083401c6SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 607507218a29SMatthew G. Knepley PetscDS dsIn = dm->probs[s].dsIn; 6076083401c6SMatthew G. Knepley IS fields = dm->probs[s].fields; 6077083401c6SMatthew G. Knepley const PetscInt *fld; 60785fedec97SMatthew G. Knepley PetscInt nf, dsnf; 60795fedec97SMatthew G. Knepley PetscBool isCohesive; 6080e5e52638SMatthew G. Knepley 60819566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsnf)); 60829566063dSJacob Faibussowitsch PetscCall(PetscDSIsCohesive(ds, &isCohesive)); 60839566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(fields, &nf)); 60849566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fields, &fld)); 6085083401c6SMatthew G. Knepley for (f = 0; f < nf; ++f) { 6086083401c6SMatthew G. Knepley PetscObject disc = dm->fields[fld[f]].disc; 60875fedec97SMatthew G. Knepley PetscBool isCohesiveField; 6088e5e52638SMatthew G. Knepley PetscClassId id; 6089e5e52638SMatthew G. Knepley 60905fedec97SMatthew G. Knepley /* Handle DS with no fields */ 60919566063dSJacob Faibussowitsch if (dsnf) PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField)); 60925fedec97SMatthew G. Knepley /* If this is a cohesive cell, then regular fields need the lower dimensional discretization */ 609307218a29SMatthew G. Knepley if (isCohesive) { 609407218a29SMatthew G. Knepley if (!isCohesiveField) { 609507218a29SMatthew G. Knepley PetscObject bdDisc; 609607218a29SMatthew G. Knepley 609707218a29SMatthew G. Knepley PetscCall(PetscFEGetHeightSubspace((PetscFE)disc, 1, (PetscFE *)&bdDisc)); 609807218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(ds, f, bdDisc)); 609907218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, f, disc)); 610007218a29SMatthew G. Knepley } else { 61019566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, f, disc)); 610207218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, f, disc)); 610307218a29SMatthew G. Knepley } 610407218a29SMatthew G. Knepley } else { 610507218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(ds, f, disc)); 610607218a29SMatthew G. Knepley } 6107083401c6SMatthew G. Knepley /* We allow people to have placeholder fields and construct the Section by hand */ 61089566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 6109e5e52638SMatthew G. Knepley if ((id != PETSCFE_CLASSID) && (id != PETSCFV_CLASSID)) doSetup = PETSC_FALSE; 6110e5e52638SMatthew G. Knepley } 61119566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fields, &fld)); 6112e5e52638SMatthew G. Knepley } 6113f9244615SMatthew G. Knepley /* Allow k-jet tabulation */ 61149566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)dm)->prefix, "-dm_ds_jet_degree", &k, &flg)); 6115f9244615SMatthew G. Knepley if (flg) { 61163b4aee56SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 61173b4aee56SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 611807218a29SMatthew G. Knepley PetscDS dsIn = dm->probs[s].dsIn; 61193b4aee56SMatthew G. Knepley PetscInt Nf, f; 61203b4aee56SMatthew G. Knepley 61219566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 612207218a29SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 612307218a29SMatthew G. Knepley PetscCall(PetscDSSetJetDegree(ds, f, k)); 612407218a29SMatthew G. Knepley if (dsIn) PetscCall(PetscDSSetJetDegree(dsIn, f, k)); 612507218a29SMatthew G. Knepley } 61263b4aee56SMatthew G. Knepley } 6127f9244615SMatthew G. Knepley } 6128e5e52638SMatthew G. Knepley /* Setup DSes */ 6129e5e52638SMatthew G. Knepley if (doSetup) { 613007218a29SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 6131cf1363e4SMatthew G. Knepley if (dm->setfromoptionscalled) { 6132cf1363e4SMatthew G. Knepley PetscCall(PetscDSSetFromOptions(dm->probs[s].ds)); 6133cf1363e4SMatthew G. Knepley if (dm->probs[s].dsIn) PetscCall(PetscDSSetFromOptions(dm->probs[s].dsIn)); 6134cf1363e4SMatthew G. Knepley } 613507218a29SMatthew G. Knepley PetscCall(PetscDSSetUp(dm->probs[s].ds)); 613607218a29SMatthew G. Knepley if (dm->probs[s].dsIn) PetscCall(PetscDSSetUp(dm->probs[s].dsIn)); 613707218a29SMatthew G. Knepley } 6138e5e52638SMatthew G. Knepley } 61393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6140e5e52638SMatthew G. Knepley } 6141e5e52638SMatthew G. Knepley 6142e5e52638SMatthew G. Knepley /*@ 6143d2b2dc1eSMatthew G. Knepley DMUseTensorOrder - Use a tensor product closure ordering for the default section 6144d2b2dc1eSMatthew G. Knepley 6145d2b2dc1eSMatthew G. Knepley Input Parameters: 6146d2b2dc1eSMatthew G. Knepley + dm - The DM 6147d2b2dc1eSMatthew G. Knepley - tensor - Flag for tensor order 6148d2b2dc1eSMatthew G. Knepley 6149d2b2dc1eSMatthew G. Knepley Level: developer 6150d2b2dc1eSMatthew G. Knepley 6151d2b2dc1eSMatthew G. Knepley .seealso: `DMPlexSetClosurePermutationTensor()`, `PetscSectionResetClosurePermutation()` 6152d2b2dc1eSMatthew G. Knepley @*/ 6153d2b2dc1eSMatthew G. Knepley PetscErrorCode DMUseTensorOrder(DM dm, PetscBool tensor) 6154d2b2dc1eSMatthew G. Knepley { 6155d2b2dc1eSMatthew G. Knepley PetscInt Nf; 6156d2b2dc1eSMatthew G. Knepley PetscBool reorder = PETSC_TRUE, isPlex; 6157d2b2dc1eSMatthew G. Knepley 6158d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 6159d2b2dc1eSMatthew G. Knepley PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 6160d2b2dc1eSMatthew G. Knepley PetscCall(DMGetNumFields(dm, &Nf)); 6161d2b2dc1eSMatthew G. Knepley for (PetscInt f = 0; f < Nf; ++f) { 6162d2b2dc1eSMatthew G. Knepley PetscObject obj; 6163d2b2dc1eSMatthew G. Knepley PetscClassId id; 6164d2b2dc1eSMatthew G. Knepley 6165d2b2dc1eSMatthew G. Knepley PetscCall(DMGetField(dm, f, NULL, &obj)); 6166d2b2dc1eSMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 6167d2b2dc1eSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 6168d2b2dc1eSMatthew G. Knepley PetscSpace sp; 6169d2b2dc1eSMatthew G. Knepley PetscBool tensor; 6170d2b2dc1eSMatthew G. Knepley 6171d2b2dc1eSMatthew G. Knepley PetscCall(PetscFEGetBasisSpace((PetscFE)obj, &sp)); 6172d2b2dc1eSMatthew G. Knepley PetscCall(PetscSpacePolynomialGetTensor(sp, &tensor)); 6173d2b2dc1eSMatthew G. Knepley reorder = reorder && tensor ? PETSC_TRUE : PETSC_FALSE; 6174d2b2dc1eSMatthew G. Knepley } else reorder = PETSC_FALSE; 6175d2b2dc1eSMatthew G. Knepley } 6176d2b2dc1eSMatthew G. Knepley if (tensor) { 6177d2b2dc1eSMatthew G. Knepley if (reorder && isPlex) PetscCall(DMPlexSetClosurePermutationTensor(dm, PETSC_DETERMINE, NULL)); 6178d2b2dc1eSMatthew G. Knepley } else { 6179d2b2dc1eSMatthew G. Knepley PetscSection s; 6180d2b2dc1eSMatthew G. Knepley 6181d2b2dc1eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm, &s)); 6182d2b2dc1eSMatthew G. Knepley if (s) PetscCall(PetscSectionResetClosurePermutation(s)); 6183d2b2dc1eSMatthew G. Knepley } 6184d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 6185d2b2dc1eSMatthew G. Knepley } 6186d2b2dc1eSMatthew G. Knepley 6187d2b2dc1eSMatthew G. Knepley /*@ 6188bb7acecfSBarry Smith DMComputeExactSolution - Compute the exact solution for a given `DM`, using the `PetscDS` information. 61897f96f943SMatthew G. Knepley 619020f4b53cSBarry Smith Collective 6191f2cacb80SMatthew G. Knepley 61927f96f943SMatthew G. Knepley Input Parameters: 6193bb7acecfSBarry Smith + dm - The `DM` 61947f96f943SMatthew G. Knepley - time - The time 61957f96f943SMatthew G. Knepley 61967f96f943SMatthew G. Knepley Output Parameters: 619720f4b53cSBarry Smith + u - The vector will be filled with exact solution values, or `NULL` 619820f4b53cSBarry Smith - u_t - The vector will be filled with the time derivative of exact solution values, or `NULL` 619920f4b53cSBarry Smith 620020f4b53cSBarry Smith Level: developer 62017f96f943SMatthew G. Knepley 6202bb7acecfSBarry Smith Note: 6203bb7acecfSBarry Smith The user must call `PetscDSSetExactSolution()` before using this routine 62047f96f943SMatthew G. Knepley 62051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscDSSetExactSolution()` 62067f96f943SMatthew G. Knepley @*/ 6207d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeExactSolution(DM dm, PetscReal time, Vec u, Vec u_t) 6208d71ae5a4SJacob Faibussowitsch { 62097f96f943SMatthew G. Knepley PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 62107f96f943SMatthew G. Knepley void **ectxs; 6211f60fa741SMatthew G. Knepley Vec locu, locu_t; 62127f96f943SMatthew G. Knepley PetscInt Nf, Nds, s; 62137f96f943SMatthew G. Knepley 62147f96f943SMatthew G. Knepley PetscFunctionBegin; 6215f2cacb80SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6216f60fa741SMatthew G. Knepley if (u) { 6217f60fa741SMatthew G. Knepley PetscValidHeaderSpecific(u, VEC_CLASSID, 3); 6218f60fa741SMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &locu)); 6219f60fa741SMatthew G. Knepley PetscCall(VecSet(locu, 0.)); 6220f60fa741SMatthew G. Knepley } 6221f60fa741SMatthew G. Knepley if (u_t) { 6222f60fa741SMatthew G. Knepley PetscValidHeaderSpecific(u_t, VEC_CLASSID, 4); 6223f60fa741SMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &locu_t)); 6224f60fa741SMatthew G. Knepley PetscCall(VecSet(locu_t, 0.)); 6225f60fa741SMatthew G. Knepley } 62269566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 62279566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(Nf, &exacts, Nf, &ectxs)); 62289566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 62297f96f943SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 62307f96f943SMatthew G. Knepley PetscDS ds; 62317f96f943SMatthew G. Knepley DMLabel label; 62327f96f943SMatthew G. Knepley IS fieldIS; 62337f96f943SMatthew G. Knepley const PetscInt *fields, id = 1; 62347f96f943SMatthew G. Knepley PetscInt dsNf, f; 62357f96f943SMatthew G. Knepley 623607218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 62379566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 62389566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fieldIS, &fields)); 62399566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 62409566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6241f2cacb80SMatthew G. Knepley if (u) { 6242f60fa741SMatthew G. Knepley for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolution(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]])); 6243f60fa741SMatthew G. Knepley if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu)); 6244f60fa741SMatthew G. Knepley else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu)); 62457f96f943SMatthew G. Knepley } 6246f2cacb80SMatthew G. Knepley if (u_t) { 62479566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 62489566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6249f60fa741SMatthew G. Knepley for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolutionTimeDerivative(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]])); 6250f60fa741SMatthew G. Knepley if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu_t)); 6251f60fa741SMatthew G. Knepley else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu_t)); 6252f2cacb80SMatthew G. Knepley } 62539566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fieldIS, &fields)); 6254f2cacb80SMatthew G. Knepley } 6255f2cacb80SMatthew G. Knepley if (u) { 62569566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution")); 62579566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u, "exact_")); 6258f2cacb80SMatthew G. Knepley } 6259f2cacb80SMatthew G. Knepley if (u_t) { 62609566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution Time Derivative")); 62619566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u_t, "exact_t_")); 6262f2cacb80SMatthew G. Knepley } 62639566063dSJacob Faibussowitsch PetscCall(PetscFree2(exacts, ectxs)); 6264f60fa741SMatthew G. Knepley if (u) { 6265f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, locu, INSERT_ALL_VALUES, u)); 6266f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, locu, INSERT_ALL_VALUES, u)); 6267f60fa741SMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &locu)); 6268f60fa741SMatthew G. Knepley } 6269f60fa741SMatthew G. Knepley if (u_t) { 6270f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, locu_t, INSERT_ALL_VALUES, u_t)); 6271f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, locu_t, INSERT_ALL_VALUES, u_t)); 6272f60fa741SMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &locu_t)); 6273f60fa741SMatthew G. Knepley } 62743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 62757f96f943SMatthew G. Knepley } 62767f96f943SMatthew G. Knepley 6277bb4b53efSMatthew G. Knepley static PetscErrorCode DMTransferDS_Internal(DM dm, DMLabel label, IS fields, PetscInt minDegree, PetscInt maxDegree, PetscDS ds, PetscDS dsIn) 6278d71ae5a4SJacob Faibussowitsch { 627907218a29SMatthew G. Knepley PetscDS dsNew, dsInNew = NULL; 628045480ffeSMatthew G. Knepley 628145480ffeSMatthew G. Knepley PetscFunctionBegin; 62829566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)ds), &dsNew)); 6283bb4b53efSMatthew G. Knepley PetscCall(PetscDSCopy(ds, minDegree, maxDegree, dm, dsNew)); 628407218a29SMatthew G. Knepley if (dsIn) { 628507218a29SMatthew G. Knepley PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)dsIn), &dsInNew)); 6286bb4b53efSMatthew G. Knepley PetscCall(PetscDSCopy(dsIn, minDegree, maxDegree, dm, dsInNew)); 628745480ffeSMatthew G. Knepley } 628807218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, label, fields, dsNew, dsInNew)); 62899566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsNew)); 629007218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dsInNew)); 62913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 629245480ffeSMatthew G. Knepley } 629345480ffeSMatthew G. Knepley 62947f96f943SMatthew G. Knepley /*@ 6295bb7acecfSBarry Smith DMCopyDS - Copy the discrete systems for the `DM` into another `DM` 6296e5e52638SMatthew G. Knepley 629720f4b53cSBarry Smith Collective 6298e5e52638SMatthew G. Knepley 6299bb4b53efSMatthew G. Knepley Input Parameters: 6300bb4b53efSMatthew G. Knepley + dm - The `DM` 6301bb4b53efSMatthew G. Knepley . minDegree - Minimum degree for a discretization, or `PETSC_DETERMINE` for no limit 6302bb4b53efSMatthew G. Knepley - maxDegree - Maximum degree for a discretization, or `PETSC_DETERMINE` for no limit 6303e5e52638SMatthew G. Knepley 6304e5e52638SMatthew G. Knepley Output Parameter: 6305bb7acecfSBarry Smith . newdm - The `DM` 6306e5e52638SMatthew G. Knepley 6307e5e52638SMatthew G. Knepley Level: advanced 6308e5e52638SMatthew G. Knepley 63091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 6310e5e52638SMatthew G. Knepley @*/ 6311bb4b53efSMatthew G. Knepley PetscErrorCode DMCopyDS(DM dm, PetscInt minDegree, PetscInt maxDegree, DM newdm) 6312d71ae5a4SJacob Faibussowitsch { 6313e5e52638SMatthew G. Knepley PetscInt Nds, s; 6314e5e52638SMatthew G. Knepley 6315e5e52638SMatthew G. Knepley PetscFunctionBegin; 63163ba16761SJacob Faibussowitsch if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS); 63179566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 63189566063dSJacob Faibussowitsch PetscCall(DMClearDS(newdm)); 6319e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 6320e5e52638SMatthew G. Knepley DMLabel label; 6321b3cf3223SMatthew G. Knepley IS fields; 632207218a29SMatthew G. Knepley PetscDS ds, dsIn, newds; 6323783e2ec8SMatthew G. Knepley PetscInt Nbd, bd; 6324e5e52638SMatthew G. Knepley 632507218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fields, &ds, &dsIn)); 6326b8025e53SMatthew G. Knepley /* TODO: We need to change all keys from labels in the old DM to labels in the new DM */ 6327bb4b53efSMatthew G. Knepley PetscCall(DMTransferDS_Internal(newdm, label, fields, minDegree, maxDegree, ds, dsIn)); 6328d5b43468SJose E. Roman /* Complete new labels in the new DS */ 632907218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(newdm, label, NULL, &newds, NULL)); 63309566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(newds, &Nbd)); 6331783e2ec8SMatthew G. Knepley for (bd = 0; bd < Nbd; ++bd) { 6332b8025e53SMatthew G. Knepley PetscWeakForm wf; 633345480ffeSMatthew G. Knepley DMLabel label; 6334783e2ec8SMatthew G. Knepley PetscInt field; 6335783e2ec8SMatthew G. Knepley 63369566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(newds, bd, &wf, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 63379566063dSJacob Faibussowitsch PetscCall(PetscWeakFormReplaceLabel(wf, label)); 6338783e2ec8SMatthew G. Knepley } 6339e5e52638SMatthew G. Knepley } 6340799db056SMatthew G. Knepley PetscCall(DMCompleteBCLabels_Internal(newdm)); 63413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6342e5e52638SMatthew G. Knepley } 6343e5e52638SMatthew G. Knepley 6344e5e52638SMatthew G. Knepley /*@ 6345bb7acecfSBarry Smith DMCopyDisc - Copy the fields and discrete systems for the `DM` into another `DM` 6346e5e52638SMatthew G. Knepley 634720f4b53cSBarry Smith Collective 6348e5e52638SMatthew G. Knepley 6349e5e52638SMatthew G. Knepley Input Parameter: 6350bb7acecfSBarry Smith . dm - The `DM` 6351e5e52638SMatthew G. Knepley 6352e5e52638SMatthew G. Knepley Output Parameter: 6353bb7acecfSBarry Smith . newdm - The `DM` 6354e5e52638SMatthew G. Knepley 6355e5e52638SMatthew G. Knepley Level: advanced 6356e5e52638SMatthew G. Knepley 635773ff1848SBarry Smith Developer Note: 6358bb7acecfSBarry Smith Really ugly name, nothing in PETSc is called a `Disc` plus it is an ugly abbreviation 6359bb7acecfSBarry Smith 63601cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMCopyDS()` 6361e5e52638SMatthew G. Knepley @*/ 6362d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDisc(DM dm, DM newdm) 6363d71ae5a4SJacob Faibussowitsch { 6364e5e52638SMatthew G. Knepley PetscFunctionBegin; 6365bb4b53efSMatthew G. Knepley PetscCall(DMCopyFields(dm, PETSC_DETERMINE, PETSC_DETERMINE, newdm)); 6366bb4b53efSMatthew G. Knepley PetscCall(DMCopyDS(dm, PETSC_DETERMINE, PETSC_DETERMINE, newdm)); 63673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6368e5e52638SMatthew G. Knepley } 6369e5e52638SMatthew G. Knepley 6370c73cfb54SMatthew G. Knepley /*@ 6371bb7acecfSBarry Smith DMGetDimension - Return the topological dimension of the `DM` 6372c73cfb54SMatthew G. Knepley 637320f4b53cSBarry Smith Not Collective 6374c73cfb54SMatthew G. Knepley 6375c73cfb54SMatthew G. Knepley Input Parameter: 6376bb7acecfSBarry Smith . dm - The `DM` 6377c73cfb54SMatthew G. Knepley 6378c73cfb54SMatthew G. Knepley Output Parameter: 6379c73cfb54SMatthew G. Knepley . dim - The topological dimension 6380c73cfb54SMatthew G. Knepley 6381c73cfb54SMatthew G. Knepley Level: beginner 6382c73cfb54SMatthew G. Knepley 63831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDimension()`, `DMCreate()` 6384c73cfb54SMatthew G. Knepley @*/ 6385d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimension(DM dm, PetscInt *dim) 6386d71ae5a4SJacob Faibussowitsch { 6387c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6388c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 63894f572ea9SToby Isaac PetscAssertPointer(dim, 2); 6390c73cfb54SMatthew G. Knepley *dim = dm->dim; 63913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6392c73cfb54SMatthew G. Knepley } 6393c73cfb54SMatthew G. Knepley 6394c73cfb54SMatthew G. Knepley /*@ 6395bb7acecfSBarry Smith DMSetDimension - Set the topological dimension of the `DM` 6396c73cfb54SMatthew G. Knepley 639720f4b53cSBarry Smith Collective 6398c73cfb54SMatthew G. Knepley 6399c73cfb54SMatthew G. Knepley Input Parameters: 6400bb7acecfSBarry Smith + dm - The `DM` 6401c73cfb54SMatthew G. Knepley - dim - The topological dimension 6402c73cfb54SMatthew G. Knepley 6403c73cfb54SMatthew G. Knepley Level: beginner 6404c73cfb54SMatthew G. Knepley 64051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDimension()`, `DMCreate()` 6406c73cfb54SMatthew G. Knepley @*/ 6407d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDimension(DM dm, PetscInt dim) 6408d71ae5a4SJacob Faibussowitsch { 6409e5e52638SMatthew G. Knepley PetscDS ds; 641045480ffeSMatthew G. Knepley PetscInt Nds, n; 6411f17e8794SMatthew G. Knepley 6412c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6413c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6414c73cfb54SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, dim, 2); 6415c73cfb54SMatthew G. Knepley dm->dim = dim; 6416d17bd122SMatthew G. Knepley if (dm->dim >= 0) { 64179566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 641845480ffeSMatthew G. Knepley for (n = 0; n < Nds; ++n) { 641907218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, n, NULL, NULL, &ds, NULL)); 64209566063dSJacob Faibussowitsch if (ds->dimEmbed < 0) PetscCall(PetscDSSetCoordinateDimension(ds, dim)); 642145480ffeSMatthew G. Knepley } 6422d17bd122SMatthew G. Knepley } 64233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6424c73cfb54SMatthew G. Knepley } 6425c73cfb54SMatthew G. Knepley 6426793f3fe5SMatthew G. Knepley /*@ 6427793f3fe5SMatthew G. Knepley DMGetDimPoints - Get the half-open interval for all points of a given dimension 6428793f3fe5SMatthew G. Knepley 642920f4b53cSBarry Smith Collective 6430793f3fe5SMatthew G. Knepley 6431793f3fe5SMatthew G. Knepley Input Parameters: 6432bb7acecfSBarry Smith + dm - the `DM` 6433793f3fe5SMatthew G. Knepley - dim - the dimension 6434793f3fe5SMatthew G. Knepley 6435793f3fe5SMatthew G. Knepley Output Parameters: 6436793f3fe5SMatthew G. Knepley + pStart - The first point of the given dimension 6437aa049354SPatrick Sanan - pEnd - The first point following points of the given dimension 6438793f3fe5SMatthew G. Knepley 643920f4b53cSBarry Smith Level: intermediate 644020f4b53cSBarry Smith 6441793f3fe5SMatthew G. Knepley Note: 6442793f3fe5SMatthew G. Knepley The points are vertices in the Hasse diagram encoding the topology. This is explained in 6443a8d69d7bSBarry Smith https://arxiv.org/abs/0908.4427. If no points exist of this dimension in the storage scheme, 6444793f3fe5SMatthew G. Knepley then the interval is empty. 6445793f3fe5SMatthew G. Knepley 64461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPLEX`, `DMPlexGetDepthStratum()`, `DMPlexGetHeightStratum()` 6447793f3fe5SMatthew G. Knepley @*/ 6448d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimPoints(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd) 6449d71ae5a4SJacob Faibussowitsch { 6450793f3fe5SMatthew G. Knepley PetscInt d; 6451793f3fe5SMatthew G. Knepley 6452793f3fe5SMatthew G. Knepley PetscFunctionBegin; 6453793f3fe5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64549566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &d)); 64557a8be351SBarry Smith PetscCheck((dim >= 0) && (dim <= d), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %" PetscInt_FMT, dim); 6456dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getdimpoints, dim, pStart, pEnd); 64573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6458793f3fe5SMatthew G. Knepley } 6459793f3fe5SMatthew G. Knepley 64606636e97aSMatthew G Knepley /*@ 6461bb7acecfSBarry Smith DMGetOutputDM - Retrieve the `DM` associated with the layout for output 6462f4d763aaSMatthew G. Knepley 646320f4b53cSBarry Smith Collective 64648f700142SStefano Zampini 6465f4d763aaSMatthew G. Knepley Input Parameter: 6466bb7acecfSBarry Smith . dm - The original `DM` 6467f4d763aaSMatthew G. Knepley 6468f4d763aaSMatthew G. Knepley Output Parameter: 6469bb7acecfSBarry Smith . odm - The `DM` which provides the layout for output 6470f4d763aaSMatthew G. Knepley 6471f4d763aaSMatthew G. Knepley Level: intermediate 6472f4d763aaSMatthew G. Knepley 6473bb7acecfSBarry Smith Note: 6474bb7acecfSBarry Smith In some situations the vector obtained with `DMCreateGlobalVector()` excludes points for degrees of freedom that are associated with fixed (Dirichelet) boundary 6475bb7acecfSBarry Smith conditions since the algebraic solver does not solve for those variables. The output `DM` includes these excluded points and its global vector contains the 6476bb7acecfSBarry Smith locations for those dof so that they can be output to a file or other viewer along with the unconstrained dof. 6477bb7acecfSBarry Smith 64781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`, `DMGetGlobalSection()`, `DMCreateGlobalVector()`, `PetscSectionHasConstraints()`, `DMSetGlobalSection()` 6479f4d763aaSMatthew G. Knepley @*/ 6480d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputDM(DM dm, DM *odm) 6481d71ae5a4SJacob Faibussowitsch { 6482c26acbdeSMatthew G. Knepley PetscSection section; 6483eb9d3e4dSMatthew G. Knepley IS perm; 6484eb9d3e4dSMatthew G. Knepley PetscBool hasConstraints, newDM, gnewDM; 648514f150ffSMatthew G. Knepley 648614f150ffSMatthew G. Knepley PetscFunctionBegin; 648714f150ffSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64884f572ea9SToby Isaac PetscAssertPointer(odm, 2); 64899566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 64909566063dSJacob Faibussowitsch PetscCall(PetscSectionHasConstraints(section, &hasConstraints)); 6491eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionGetPermutation(section, &perm)); 6492eb9d3e4dSMatthew G. Knepley newDM = hasConstraints || perm ? PETSC_TRUE : PETSC_FALSE; 6493462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&newDM, &gnewDM, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm))); 6494eb9d3e4dSMatthew G. Knepley if (!gnewDM) { 6495c26acbdeSMatthew G. Knepley *odm = dm; 64963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6497c26acbdeSMatthew G. Knepley } 649814f150ffSMatthew G. Knepley if (!dm->dmBC) { 6499c26acbdeSMatthew G. Knepley PetscSection newSection, gsection; 650014f150ffSMatthew G. Knepley PetscSF sf; 6501eb9d3e4dSMatthew G. Knepley PetscBool usePerm = dm->ignorePermOutput ? PETSC_FALSE : PETSC_TRUE; 650214f150ffSMatthew G. Knepley 65039566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->dmBC)); 65049566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, dm->dmBC)); 65059566063dSJacob Faibussowitsch PetscCall(PetscSectionClone(section, &newSection)); 65069566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm->dmBC, newSection)); 65079566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newSection)); 65089566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm->dmBC, &sf)); 6509eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionCreateGlobalSection(section, sf, usePerm, PETSC_TRUE, PETSC_FALSE, &gsection)); 65109566063dSJacob Faibussowitsch PetscCall(DMSetGlobalSection(dm->dmBC, gsection)); 65119566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&gsection)); 651214f150ffSMatthew G. Knepley } 651314f150ffSMatthew G. Knepley *odm = dm->dmBC; 65143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 651514f150ffSMatthew G. Knepley } 6516f4d763aaSMatthew G. Knepley 6517f4d763aaSMatthew G. Knepley /*@ 6518cdb7a50dSMatthew G. Knepley DMGetOutputSequenceNumber - Retrieve the sequence number/value for output 6519f4d763aaSMatthew G. Knepley 6520f4d763aaSMatthew G. Knepley Input Parameter: 6521bb7acecfSBarry Smith . dm - The original `DM` 6522f4d763aaSMatthew G. Knepley 6523cdb7a50dSMatthew G. Knepley Output Parameters: 6524cdb7a50dSMatthew G. Knepley + num - The output sequence number 6525cdb7a50dSMatthew G. Knepley - val - The output sequence value 6526f4d763aaSMatthew G. Knepley 6527f4d763aaSMatthew G. Knepley Level: intermediate 6528f4d763aaSMatthew G. Knepley 6529bb7acecfSBarry Smith Note: 6530bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6531bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6532bb7acecfSBarry Smith 653373ff1848SBarry Smith Developer Note: 6534bb7acecfSBarry Smith The `DM` serves as a convenient place to store the current iteration value. The iteration is not 6535bb7acecfSBarry Smith not directly related to the `DM`. 6536f4d763aaSMatthew G. Knepley 65371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()` 6538f4d763aaSMatthew G. Knepley @*/ 6539d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputSequenceNumber(DM dm, PetscInt *num, PetscReal *val) 6540d71ae5a4SJacob Faibussowitsch { 6541f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6542f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 65439371c9d4SSatish Balay if (num) { 65444f572ea9SToby Isaac PetscAssertPointer(num, 2); 65459371c9d4SSatish Balay *num = dm->outputSequenceNum; 65469371c9d4SSatish Balay } 65479371c9d4SSatish Balay if (val) { 65484f572ea9SToby Isaac PetscAssertPointer(val, 3); 65499371c9d4SSatish Balay *val = dm->outputSequenceVal; 65509371c9d4SSatish Balay } 65513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6552f4d763aaSMatthew G. Knepley } 6553f4d763aaSMatthew G. Knepley 6554f4d763aaSMatthew G. Knepley /*@ 6555cdb7a50dSMatthew G. Knepley DMSetOutputSequenceNumber - Set the sequence number/value for output 6556f4d763aaSMatthew G. Knepley 6557f4d763aaSMatthew G. Knepley Input Parameters: 6558bb7acecfSBarry Smith + dm - The original `DM` 6559cdb7a50dSMatthew G. Knepley . num - The output sequence number 6560cdb7a50dSMatthew G. Knepley - val - The output sequence value 6561f4d763aaSMatthew G. Knepley 6562f4d763aaSMatthew G. Knepley Level: intermediate 6563f4d763aaSMatthew G. Knepley 6564bb7acecfSBarry Smith Note: 6565bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6566bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6567f4d763aaSMatthew G. Knepley 65681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()` 6569f4d763aaSMatthew G. Knepley @*/ 6570d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOutputSequenceNumber(DM dm, PetscInt num, PetscReal val) 6571d71ae5a4SJacob Faibussowitsch { 6572f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6573f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6574f4d763aaSMatthew G. Knepley dm->outputSequenceNum = num; 6575cdb7a50dSMatthew G. Knepley dm->outputSequenceVal = val; 65763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6577cdb7a50dSMatthew G. Knepley } 6578cdb7a50dSMatthew G. Knepley 65795d83a8b1SBarry Smith /*@ 6580bb7acecfSBarry Smith DMOutputSequenceLoad - Retrieve the sequence value from a `PetscViewer` 6581cdb7a50dSMatthew G. Knepley 6582cdb7a50dSMatthew G. Knepley Input Parameters: 6583bb7acecfSBarry Smith + dm - The original `DM` 6584b2033f5dSMatthew G. Knepley . viewer - The `PetscViewer` to get it from 6585cdb7a50dSMatthew G. Knepley . name - The sequence name 6586cdb7a50dSMatthew G. Knepley - num - The output sequence number 6587cdb7a50dSMatthew G. Knepley 6588cdb7a50dSMatthew G. Knepley Output Parameter: 6589cdb7a50dSMatthew G. Knepley . val - The output sequence value 6590cdb7a50dSMatthew G. Knepley 6591cdb7a50dSMatthew G. Knepley Level: intermediate 6592cdb7a50dSMatthew G. Knepley 6593bb7acecfSBarry Smith Note: 6594bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6595bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6596bb7acecfSBarry Smith 659773ff1848SBarry Smith Developer Note: 6598bb7acecfSBarry Smith It is unclear at the user API level why a `DM` is needed as input 6599cdb7a50dSMatthew G. Knepley 66001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()` 6601cdb7a50dSMatthew G. Knepley @*/ 6602b2033f5dSMatthew G. Knepley PetscErrorCode DMOutputSequenceLoad(DM dm, PetscViewer viewer, const char name[], PetscInt num, PetscReal *val) 6603d71ae5a4SJacob Faibussowitsch { 6604cdb7a50dSMatthew G. Knepley PetscBool ishdf5; 6605cdb7a50dSMatthew G. Knepley 6606cdb7a50dSMatthew G. Knepley PetscFunctionBegin; 6607cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6608cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 6609b2033f5dSMatthew G. Knepley PetscAssertPointer(name, 3); 66104f572ea9SToby Isaac PetscAssertPointer(val, 5); 66119566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 6612cdb7a50dSMatthew G. Knepley if (ishdf5) { 6613cdb7a50dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 6614cdb7a50dSMatthew G. Knepley PetscScalar value; 6615cdb7a50dSMatthew G. Knepley 66169566063dSJacob Faibussowitsch PetscCall(DMSequenceLoad_HDF5_Internal(dm, name, num, &value, viewer)); 66174aeb217fSMatthew G. Knepley *val = PetscRealPart(value); 6618cdb7a50dSMatthew G. Knepley #endif 6619cdb7a50dSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()"); 66203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6621f4d763aaSMatthew G. Knepley } 66228e4ac7eaSMatthew G. Knepley 66238e4ac7eaSMatthew G. Knepley /*@ 6624b2033f5dSMatthew G. Knepley DMGetOutputSequenceLength - Retrieve the number of sequence values from a `PetscViewer` 6625b2033f5dSMatthew G. Knepley 6626b2033f5dSMatthew G. Knepley Input Parameters: 6627b2033f5dSMatthew G. Knepley + dm - The original `DM` 6628b2033f5dSMatthew G. Knepley . viewer - The `PetscViewer` to get it from 6629b2033f5dSMatthew G. Knepley - name - The sequence name 6630b2033f5dSMatthew G. Knepley 6631b2033f5dSMatthew G. Knepley Output Parameter: 6632b2033f5dSMatthew G. Knepley . len - The length of the output sequence 6633b2033f5dSMatthew G. Knepley 6634b2033f5dSMatthew G. Knepley Level: intermediate 6635b2033f5dSMatthew G. Knepley 6636b2033f5dSMatthew G. Knepley Note: 6637b2033f5dSMatthew G. Knepley This is intended for output that should appear in sequence, for instance 6638b2033f5dSMatthew G. Knepley a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6639b2033f5dSMatthew G. Knepley 6640b2033f5dSMatthew G. Knepley Developer Note: 6641b2033f5dSMatthew G. Knepley It is unclear at the user API level why a `DM` is needed as input 6642b2033f5dSMatthew G. Knepley 6643b2033f5dSMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()` 6644b2033f5dSMatthew G. Knepley @*/ 6645b2033f5dSMatthew G. Knepley PetscErrorCode DMGetOutputSequenceLength(DM dm, PetscViewer viewer, const char name[], PetscInt *len) 6646b2033f5dSMatthew G. Knepley { 6647b2033f5dSMatthew G. Knepley PetscBool ishdf5; 6648b2033f5dSMatthew G. Knepley 6649b2033f5dSMatthew G. Knepley PetscFunctionBegin; 6650b2033f5dSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6651b2033f5dSMatthew G. Knepley PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 6652b2033f5dSMatthew G. Knepley PetscAssertPointer(name, 3); 6653b2033f5dSMatthew G. Knepley PetscAssertPointer(len, 4); 6654b2033f5dSMatthew G. Knepley PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 6655b2033f5dSMatthew G. Knepley if (ishdf5) { 6656b2033f5dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 6657b2033f5dSMatthew G. Knepley PetscCall(DMSequenceGetLength_HDF5_Internal(dm, name, len, viewer)); 6658b2033f5dSMatthew G. Knepley #endif 6659b2033f5dSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()"); 6660b2033f5dSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 6661b2033f5dSMatthew G. Knepley } 6662b2033f5dSMatthew G. Knepley 6663b2033f5dSMatthew G. Knepley /*@ 6664bb7acecfSBarry Smith DMGetUseNatural - Get the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 66658e4ac7eaSMatthew G. Knepley 666620f4b53cSBarry Smith Not Collective 66678e4ac7eaSMatthew G. Knepley 66688e4ac7eaSMatthew G. Knepley Input Parameter: 6669bb7acecfSBarry Smith . dm - The `DM` 66708e4ac7eaSMatthew G. Knepley 66718e4ac7eaSMatthew G. Knepley Output Parameter: 6672bb7acecfSBarry Smith . useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 66738e4ac7eaSMatthew G. Knepley 66748e4ac7eaSMatthew G. Knepley Level: beginner 66758e4ac7eaSMatthew G. Knepley 66761cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetUseNatural()`, `DMCreate()` 66778e4ac7eaSMatthew G. Knepley @*/ 6678d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetUseNatural(DM dm, PetscBool *useNatural) 6679d71ae5a4SJacob Faibussowitsch { 66808e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 66818e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 66824f572ea9SToby Isaac PetscAssertPointer(useNatural, 2); 66838e4ac7eaSMatthew G. Knepley *useNatural = dm->useNatural; 66843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 66858e4ac7eaSMatthew G. Knepley } 66868e4ac7eaSMatthew G. Knepley 66878e4ac7eaSMatthew G. Knepley /*@ 6688bb7acecfSBarry Smith DMSetUseNatural - Set the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 66898e4ac7eaSMatthew G. Knepley 669020f4b53cSBarry Smith Collective 66918e4ac7eaSMatthew G. Knepley 66928e4ac7eaSMatthew G. Knepley Input Parameters: 6693bb7acecfSBarry Smith + dm - The `DM` 6694bb7acecfSBarry Smith - useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 66958e4ac7eaSMatthew G. Knepley 669673ff1848SBarry Smith Level: beginner 669773ff1848SBarry Smith 6698bb7acecfSBarry Smith Note: 6699bb7acecfSBarry Smith This also causes the map to be build after `DMCreateSubDM()` and `DMCreateSuperDM()` 67005d3b26e6SMatthew G. Knepley 67011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetUseNatural()`, `DMCreate()`, `DMPlexDistribute()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 67028e4ac7eaSMatthew G. Knepley @*/ 6703d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUseNatural(DM dm, PetscBool useNatural) 6704d71ae5a4SJacob Faibussowitsch { 67058e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 67068e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67078833efb5SBlaise Bourdin PetscValidLogicalCollectiveBool(dm, useNatural, 2); 67088e4ac7eaSMatthew G. Knepley dm->useNatural = useNatural; 67093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 67108e4ac7eaSMatthew G. Knepley } 6711c58f1c22SToby Isaac 6712cc4c1da9SBarry Smith /*@ 6713bb7acecfSBarry Smith DMCreateLabel - Create a label of the given name if it does not already exist in the `DM` 6714c58f1c22SToby Isaac 6715c58f1c22SToby Isaac Not Collective 6716c58f1c22SToby Isaac 6717c58f1c22SToby Isaac Input Parameters: 6718bb7acecfSBarry Smith + dm - The `DM` object 6719c58f1c22SToby Isaac - name - The label name 6720c58f1c22SToby Isaac 6721c58f1c22SToby Isaac Level: intermediate 6722c58f1c22SToby Isaac 67231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6724c58f1c22SToby Isaac @*/ 6725d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabel(DM dm, const char name[]) 6726d71ae5a4SJacob Faibussowitsch { 67275d80c0bfSVaclav Hapla PetscBool flg; 67285d80c0bfSVaclav Hapla DMLabel label; 6729c58f1c22SToby Isaac 6730c58f1c22SToby Isaac PetscFunctionBegin; 6731c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67324f572ea9SToby Isaac PetscAssertPointer(name, 2); 67339566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 6734c58f1c22SToby Isaac if (!flg) { 67359566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 67369566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 67379566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 6738c58f1c22SToby Isaac } 67393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6740c58f1c22SToby Isaac } 6741c58f1c22SToby Isaac 6742cc4c1da9SBarry Smith /*@ 6743bb7acecfSBarry Smith DMCreateLabelAtIndex - Create a label of the given name at the given index. If it already exists in the `DM`, move it to this index. 67440fdc7489SMatthew Knepley 67450fdc7489SMatthew Knepley Not Collective 67460fdc7489SMatthew Knepley 67470fdc7489SMatthew Knepley Input Parameters: 6748bb7acecfSBarry Smith + dm - The `DM` object 67490fdc7489SMatthew Knepley . l - The index for the label 67500fdc7489SMatthew Knepley - name - The label name 67510fdc7489SMatthew Knepley 67520fdc7489SMatthew Knepley Level: intermediate 67530fdc7489SMatthew Knepley 67541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateLabel()`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 67550fdc7489SMatthew Knepley @*/ 6756d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabelAtIndex(DM dm, PetscInt l, const char name[]) 6757d71ae5a4SJacob Faibussowitsch { 67580fdc7489SMatthew Knepley DMLabelLink orig, prev = NULL; 67590fdc7489SMatthew Knepley DMLabel label; 67600fdc7489SMatthew Knepley PetscInt Nl, m; 67610fdc7489SMatthew Knepley PetscBool flg, match; 67620fdc7489SMatthew Knepley const char *lname; 67630fdc7489SMatthew Knepley 67640fdc7489SMatthew Knepley PetscFunctionBegin; 67650fdc7489SMatthew Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67664f572ea9SToby Isaac PetscAssertPointer(name, 3); 67679566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 67680fdc7489SMatthew Knepley if (!flg) { 67699566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 67709566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 67719566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 67720fdc7489SMatthew Knepley } 67739566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 677463a3b9bcSJacob Faibussowitsch PetscCheck(l < Nl, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label index %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", l, Nl); 67750fdc7489SMatthew Knepley for (m = 0, orig = dm->labels; m < Nl; ++m, prev = orig, orig = orig->next) { 67769566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)orig->label, &lname)); 67779566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &match)); 67780fdc7489SMatthew Knepley if (match) break; 67790fdc7489SMatthew Knepley } 67803ba16761SJacob Faibussowitsch if (m == l) PetscFunctionReturn(PETSC_SUCCESS); 67810fdc7489SMatthew Knepley if (!m) dm->labels = orig->next; 67820fdc7489SMatthew Knepley else prev->next = orig->next; 67830fdc7489SMatthew Knepley if (!l) { 67840fdc7489SMatthew Knepley orig->next = dm->labels; 67850fdc7489SMatthew Knepley dm->labels = orig; 67860fdc7489SMatthew Knepley } else { 6787fbccb6d4SPierre Jolivet for (m = 0, prev = dm->labels; m < l - 1; ++m, prev = prev->next); 67880fdc7489SMatthew Knepley orig->next = prev->next; 67890fdc7489SMatthew Knepley prev->next = orig; 67900fdc7489SMatthew Knepley } 67913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 67920fdc7489SMatthew Knepley } 67930fdc7489SMatthew Knepley 6794cc4c1da9SBarry Smith /*@ 6795bb7acecfSBarry Smith DMGetLabelValue - Get the value in a `DMLabel` for the given point, with -1 as the default 6796c58f1c22SToby Isaac 6797c58f1c22SToby Isaac Not Collective 6798c58f1c22SToby Isaac 6799c58f1c22SToby Isaac Input Parameters: 6800bb7acecfSBarry Smith + dm - The `DM` object 6801c58f1c22SToby Isaac . name - The label name 6802c58f1c22SToby Isaac - point - The mesh point 6803c58f1c22SToby Isaac 6804c58f1c22SToby Isaac Output Parameter: 6805c58f1c22SToby Isaac . value - The label value for this point, or -1 if the point is not in the label 6806c58f1c22SToby Isaac 6807c58f1c22SToby Isaac Level: beginner 6808c58f1c22SToby Isaac 68091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6810c58f1c22SToby Isaac @*/ 6811d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelValue(DM dm, const char name[], PetscInt point, PetscInt *value) 6812d71ae5a4SJacob Faibussowitsch { 6813c58f1c22SToby Isaac DMLabel label; 6814c58f1c22SToby Isaac 6815c58f1c22SToby Isaac PetscFunctionBegin; 6816c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68174f572ea9SToby Isaac PetscAssertPointer(name, 2); 68189566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 68197a8be351SBarry Smith PetscCheck(label, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No label named %s was found", name); 68209566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, value)); 68213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6822c58f1c22SToby Isaac } 6823c58f1c22SToby Isaac 6824cc4c1da9SBarry Smith /*@ 6825bb7acecfSBarry Smith DMSetLabelValue - Add a point to a `DMLabel` with given value 6826c58f1c22SToby Isaac 6827c58f1c22SToby Isaac Not Collective 6828c58f1c22SToby Isaac 6829c58f1c22SToby Isaac Input Parameters: 6830bb7acecfSBarry Smith + dm - The `DM` object 6831c58f1c22SToby Isaac . name - The label name 6832c58f1c22SToby Isaac . point - The mesh point 6833c58f1c22SToby Isaac - value - The label value for this point 6834c58f1c22SToby Isaac 6835c58f1c22SToby Isaac Output Parameter: 6836c58f1c22SToby Isaac 6837c58f1c22SToby Isaac Level: beginner 6838c58f1c22SToby Isaac 68391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelSetValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 6840c58f1c22SToby Isaac @*/ 6841d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6842d71ae5a4SJacob Faibussowitsch { 6843c58f1c22SToby Isaac DMLabel label; 6844c58f1c22SToby Isaac 6845c58f1c22SToby Isaac PetscFunctionBegin; 6846c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68474f572ea9SToby Isaac PetscAssertPointer(name, 2); 68489566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6849c58f1c22SToby Isaac if (!label) { 68509566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 68519566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6852c58f1c22SToby Isaac } 68539566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, value)); 68543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6855c58f1c22SToby Isaac } 6856c58f1c22SToby Isaac 6857cc4c1da9SBarry Smith /*@ 6858bb7acecfSBarry Smith DMClearLabelValue - Remove a point from a `DMLabel` with given value 6859c58f1c22SToby Isaac 6860c58f1c22SToby Isaac Not Collective 6861c58f1c22SToby Isaac 6862c58f1c22SToby Isaac Input Parameters: 6863bb7acecfSBarry Smith + dm - The `DM` object 6864c58f1c22SToby Isaac . name - The label name 6865c58f1c22SToby Isaac . point - The mesh point 6866c58f1c22SToby Isaac - value - The label value for this point 6867c58f1c22SToby Isaac 6868c58f1c22SToby Isaac Level: beginner 6869c58f1c22SToby Isaac 68701cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelClearValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6871c58f1c22SToby Isaac @*/ 6872d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6873d71ae5a4SJacob Faibussowitsch { 6874c58f1c22SToby Isaac DMLabel label; 6875c58f1c22SToby Isaac 6876c58f1c22SToby Isaac PetscFunctionBegin; 6877c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68784f572ea9SToby Isaac PetscAssertPointer(name, 2); 68799566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 68803ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 68819566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, value)); 68823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6883c58f1c22SToby Isaac } 6884c58f1c22SToby Isaac 6885cc4c1da9SBarry Smith /*@ 6886bb7acecfSBarry Smith DMGetLabelSize - Get the value of `DMLabelGetNumValues()` of a `DMLabel` in the `DM` 6887c58f1c22SToby Isaac 6888c58f1c22SToby Isaac Not Collective 6889c58f1c22SToby Isaac 6890c58f1c22SToby Isaac Input Parameters: 6891bb7acecfSBarry Smith + dm - The `DM` object 6892c58f1c22SToby Isaac - name - The label name 6893c58f1c22SToby Isaac 6894c58f1c22SToby Isaac Output Parameter: 6895c58f1c22SToby Isaac . size - The number of different integer ids, or 0 if the label does not exist 6896c58f1c22SToby Isaac 6897c58f1c22SToby Isaac Level: beginner 6898c58f1c22SToby Isaac 689973ff1848SBarry Smith Developer Note: 6900bb7acecfSBarry Smith This should be renamed to something like `DMGetLabelNumValues()` or removed. 6901bb7acecfSBarry Smith 69021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetNumValues()`, `DMSetLabelValue()`, `DMGetLabel()` 6903c58f1c22SToby Isaac @*/ 6904d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelSize(DM dm, const char name[], PetscInt *size) 6905d71ae5a4SJacob Faibussowitsch { 6906c58f1c22SToby Isaac DMLabel label; 6907c58f1c22SToby Isaac 6908c58f1c22SToby Isaac PetscFunctionBegin; 6909c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69104f572ea9SToby Isaac PetscAssertPointer(name, 2); 69114f572ea9SToby Isaac PetscAssertPointer(size, 3); 69129566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6913c58f1c22SToby Isaac *size = 0; 69143ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69159566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, size)); 69163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6917c58f1c22SToby Isaac } 6918c58f1c22SToby Isaac 6919cc4c1da9SBarry Smith /*@ 6920bb7acecfSBarry Smith DMGetLabelIdIS - Get the `DMLabelGetValueIS()` from a `DMLabel` in the `DM` 6921c58f1c22SToby Isaac 6922c58f1c22SToby Isaac Not Collective 6923c58f1c22SToby Isaac 6924c58f1c22SToby Isaac Input Parameters: 692560225df5SJacob Faibussowitsch + dm - The `DM` object 6926c58f1c22SToby Isaac - name - The label name 6927c58f1c22SToby Isaac 6928c58f1c22SToby Isaac Output Parameter: 692920f4b53cSBarry Smith . ids - The integer ids, or `NULL` if the label does not exist 6930c58f1c22SToby Isaac 6931c58f1c22SToby Isaac Level: beginner 6932c58f1c22SToby Isaac 69331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValueIS()`, `DMGetLabelSize()` 6934c58f1c22SToby Isaac @*/ 6935d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelIdIS(DM dm, const char name[], IS *ids) 6936d71ae5a4SJacob Faibussowitsch { 6937c58f1c22SToby Isaac DMLabel label; 6938c58f1c22SToby Isaac 6939c58f1c22SToby Isaac PetscFunctionBegin; 6940c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69414f572ea9SToby Isaac PetscAssertPointer(name, 2); 69424f572ea9SToby Isaac PetscAssertPointer(ids, 3); 69439566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6944c58f1c22SToby Isaac *ids = NULL; 6945dab2e251SBlaise Bourdin if (label) { 69469566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, ids)); 6947dab2e251SBlaise Bourdin } else { 6948dab2e251SBlaise Bourdin /* returning an empty IS */ 69499566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_USE_POINTER, ids)); 6950dab2e251SBlaise Bourdin } 69513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6952c58f1c22SToby Isaac } 6953c58f1c22SToby Isaac 6954cc4c1da9SBarry Smith /*@ 6955c58f1c22SToby Isaac DMGetStratumSize - Get the number of points in a label stratum 6956c58f1c22SToby Isaac 6957c58f1c22SToby Isaac Not Collective 6958c58f1c22SToby Isaac 6959c58f1c22SToby Isaac Input Parameters: 6960bb7acecfSBarry Smith + dm - The `DM` object 6961b6971eaeSBarry Smith . name - The label name of the stratum 6962c58f1c22SToby Isaac - value - The stratum value 6963c58f1c22SToby Isaac 6964c58f1c22SToby Isaac Output Parameter: 6965bb7acecfSBarry Smith . size - The number of points, also called the stratum size 6966c58f1c22SToby Isaac 6967c58f1c22SToby Isaac Level: beginner 6968c58f1c22SToby Isaac 69691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumSize()`, `DMGetLabelSize()`, `DMGetLabelIds()` 6970c58f1c22SToby Isaac @*/ 6971d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumSize(DM dm, const char name[], PetscInt value, PetscInt *size) 6972d71ae5a4SJacob Faibussowitsch { 6973c58f1c22SToby Isaac DMLabel label; 6974c58f1c22SToby Isaac 6975c58f1c22SToby Isaac PetscFunctionBegin; 6976c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69774f572ea9SToby Isaac PetscAssertPointer(name, 2); 69784f572ea9SToby Isaac PetscAssertPointer(size, 4); 69799566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6980c58f1c22SToby Isaac *size = 0; 69813ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69829566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, value, size)); 69833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6984c58f1c22SToby Isaac } 6985c58f1c22SToby Isaac 6986cc4c1da9SBarry Smith /*@ 6987c58f1c22SToby Isaac DMGetStratumIS - Get the points in a label stratum 6988c58f1c22SToby Isaac 6989c58f1c22SToby Isaac Not Collective 6990c58f1c22SToby Isaac 6991c58f1c22SToby Isaac Input Parameters: 6992bb7acecfSBarry Smith + dm - The `DM` object 6993c58f1c22SToby Isaac . name - The label name 6994c58f1c22SToby Isaac - value - The stratum value 6995c58f1c22SToby Isaac 6996c58f1c22SToby Isaac Output Parameter: 699720f4b53cSBarry Smith . points - The stratum points, or `NULL` if the label does not exist or does not have that value 6998c58f1c22SToby Isaac 6999c58f1c22SToby Isaac Level: beginner 7000c58f1c22SToby Isaac 70011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumIS()`, `DMGetStratumSize()` 7002c58f1c22SToby Isaac @*/ 7003d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumIS(DM dm, const char name[], PetscInt value, IS *points) 7004d71ae5a4SJacob Faibussowitsch { 7005c58f1c22SToby Isaac DMLabel label; 7006c58f1c22SToby Isaac 7007c58f1c22SToby Isaac PetscFunctionBegin; 7008c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70094f572ea9SToby Isaac PetscAssertPointer(name, 2); 70104f572ea9SToby Isaac PetscAssertPointer(points, 4); 70119566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 7012c58f1c22SToby Isaac *points = NULL; 70133ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 70149566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, value, points)); 70153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7016c58f1c22SToby Isaac } 7017c58f1c22SToby Isaac 7018cc4c1da9SBarry Smith /*@ 70199044fa66SMatthew G. Knepley DMSetStratumIS - Set the points in a label stratum 70204de306b1SToby Isaac 70214de306b1SToby Isaac Not Collective 70224de306b1SToby Isaac 70234de306b1SToby Isaac Input Parameters: 7024bb7acecfSBarry Smith + dm - The `DM` object 70254de306b1SToby Isaac . name - The label name 70264de306b1SToby Isaac . value - The stratum value 70274de306b1SToby Isaac - points - The stratum points 70284de306b1SToby Isaac 70294de306b1SToby Isaac Level: beginner 70304de306b1SToby Isaac 70311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMClearLabelStratum()`, `DMLabelClearStratum()`, `DMLabelSetStratumIS()`, `DMGetStratumSize()` 70324de306b1SToby Isaac @*/ 7033d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetStratumIS(DM dm, const char name[], PetscInt value, IS points) 7034d71ae5a4SJacob Faibussowitsch { 70354de306b1SToby Isaac DMLabel label; 70364de306b1SToby Isaac 70374de306b1SToby Isaac PetscFunctionBegin; 70384de306b1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70394f572ea9SToby Isaac PetscAssertPointer(name, 2); 7040292bffcbSToby Isaac PetscValidHeaderSpecific(points, IS_CLASSID, 4); 70419566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 70423ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 70439566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(label, value, points)); 70443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70454de306b1SToby Isaac } 70464de306b1SToby Isaac 7047cc4c1da9SBarry Smith /*@ 7048bb7acecfSBarry Smith DMClearLabelStratum - Remove all points from a stratum from a `DMLabel` 7049c58f1c22SToby Isaac 7050c58f1c22SToby Isaac Not Collective 7051c58f1c22SToby Isaac 7052c58f1c22SToby Isaac Input Parameters: 7053bb7acecfSBarry Smith + dm - The `DM` object 7054c58f1c22SToby Isaac . name - The label name 7055c58f1c22SToby Isaac - value - The label value for this point 7056c58f1c22SToby Isaac 7057c58f1c22SToby Isaac Output Parameter: 7058c58f1c22SToby Isaac 7059c58f1c22SToby Isaac Level: beginner 7060c58f1c22SToby Isaac 70611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMLabelClearStratum()`, `DMSetLabelValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 7062c58f1c22SToby Isaac @*/ 7063d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelStratum(DM dm, const char name[], PetscInt value) 7064d71ae5a4SJacob Faibussowitsch { 7065c58f1c22SToby Isaac DMLabel label; 7066c58f1c22SToby Isaac 7067c58f1c22SToby Isaac PetscFunctionBegin; 7068c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70694f572ea9SToby Isaac PetscAssertPointer(name, 2); 70709566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 70713ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 70729566063dSJacob Faibussowitsch PetscCall(DMLabelClearStratum(label, value)); 70733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7074c58f1c22SToby Isaac } 7075c58f1c22SToby Isaac 7076c58f1c22SToby Isaac /*@ 7077bb7acecfSBarry Smith DMGetNumLabels - Return the number of labels defined by on the `DM` 7078c58f1c22SToby Isaac 7079c58f1c22SToby Isaac Not Collective 7080c58f1c22SToby Isaac 7081c58f1c22SToby Isaac Input Parameter: 7082bb7acecfSBarry Smith . dm - The `DM` object 7083c58f1c22SToby Isaac 7084c58f1c22SToby Isaac Output Parameter: 7085c58f1c22SToby Isaac . numLabels - the number of Labels 7086c58f1c22SToby Isaac 7087c58f1c22SToby Isaac Level: intermediate 7088c58f1c22SToby Isaac 70891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabelName()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7090c58f1c22SToby Isaac @*/ 7091d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumLabels(DM dm, PetscInt *numLabels) 7092d71ae5a4SJacob Faibussowitsch { 70935d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7094c58f1c22SToby Isaac PetscInt n = 0; 7095c58f1c22SToby Isaac 7096c58f1c22SToby Isaac PetscFunctionBegin; 7097c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70984f572ea9SToby Isaac PetscAssertPointer(numLabels, 2); 70999371c9d4SSatish Balay while (next) { 71009371c9d4SSatish Balay ++n; 71019371c9d4SSatish Balay next = next->next; 71029371c9d4SSatish Balay } 7103c58f1c22SToby Isaac *numLabels = n; 71043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7105c58f1c22SToby Isaac } 7106c58f1c22SToby Isaac 7107cc4c1da9SBarry Smith /*@ 7108c58f1c22SToby Isaac DMGetLabelName - Return the name of nth label 7109c58f1c22SToby Isaac 7110c58f1c22SToby Isaac Not Collective 7111c58f1c22SToby Isaac 7112c58f1c22SToby Isaac Input Parameters: 7113bb7acecfSBarry Smith + dm - The `DM` object 7114c58f1c22SToby Isaac - n - the label number 7115c58f1c22SToby Isaac 7116c58f1c22SToby Isaac Output Parameter: 7117c58f1c22SToby Isaac . name - the label name 7118c58f1c22SToby Isaac 7119c58f1c22SToby Isaac Level: intermediate 7120c58f1c22SToby Isaac 712173ff1848SBarry Smith Developer Note: 7122bb7acecfSBarry Smith Some of the functions that appropriate on labels using their number have the suffix ByNum, others do not. 7123bb7acecfSBarry Smith 71241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7125c58f1c22SToby Isaac @*/ 7126cc4c1da9SBarry Smith PetscErrorCode DMGetLabelName(DM dm, PetscInt n, const char *name[]) 7127d71ae5a4SJacob Faibussowitsch { 71285d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7129c58f1c22SToby Isaac PetscInt l = 0; 7130c58f1c22SToby Isaac 7131c58f1c22SToby Isaac PetscFunctionBegin; 7132c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71334f572ea9SToby Isaac PetscAssertPointer(name, 3); 7134c58f1c22SToby Isaac while (next) { 7135c58f1c22SToby Isaac if (l == n) { 71369566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, name)); 71373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7138c58f1c22SToby Isaac } 7139c58f1c22SToby Isaac ++l; 7140c58f1c22SToby Isaac next = next->next; 7141c58f1c22SToby Isaac } 714263a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 7143c58f1c22SToby Isaac } 7144c58f1c22SToby Isaac 7145cc4c1da9SBarry Smith /*@ 7146bb7acecfSBarry Smith DMHasLabel - Determine whether the `DM` has a label of a given name 7147c58f1c22SToby Isaac 7148c58f1c22SToby Isaac Not Collective 7149c58f1c22SToby Isaac 7150c58f1c22SToby Isaac Input Parameters: 7151bb7acecfSBarry Smith + dm - The `DM` object 7152c58f1c22SToby Isaac - name - The label name 7153c58f1c22SToby Isaac 7154c58f1c22SToby Isaac Output Parameter: 7155bb7acecfSBarry Smith . hasLabel - `PETSC_TRUE` if the label is present 7156c58f1c22SToby Isaac 7157c58f1c22SToby Isaac Level: intermediate 7158c58f1c22SToby Isaac 71591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabel()`, `DMGetLabelByNum()`, `DMCreateLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7160c58f1c22SToby Isaac @*/ 7161d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasLabel(DM dm, const char name[], PetscBool *hasLabel) 7162d71ae5a4SJacob Faibussowitsch { 71635d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7164d67d17b1SMatthew G. Knepley const char *lname; 7165c58f1c22SToby Isaac 7166c58f1c22SToby Isaac PetscFunctionBegin; 7167c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71684f572ea9SToby Isaac PetscAssertPointer(name, 2); 71694f572ea9SToby Isaac PetscAssertPointer(hasLabel, 3); 7170c58f1c22SToby Isaac *hasLabel = PETSC_FALSE; 7171c58f1c22SToby Isaac while (next) { 71729566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 71739566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, hasLabel)); 7174c58f1c22SToby Isaac if (*hasLabel) break; 7175c58f1c22SToby Isaac next = next->next; 7176c58f1c22SToby Isaac } 71773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7178c58f1c22SToby Isaac } 7179c58f1c22SToby Isaac 7180a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown 7181cc4c1da9SBarry Smith /*@ 718220f4b53cSBarry Smith DMGetLabel - Return the label of a given name, or `NULL`, from a `DM` 7183c58f1c22SToby Isaac 7184c58f1c22SToby Isaac Not Collective 7185c58f1c22SToby Isaac 7186c58f1c22SToby Isaac Input Parameters: 7187bb7acecfSBarry Smith + dm - The `DM` object 7188c58f1c22SToby Isaac - name - The label name 7189c58f1c22SToby Isaac 7190c58f1c22SToby Isaac Output Parameter: 719120f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent 7192c58f1c22SToby Isaac 7193bb7acecfSBarry Smith Default labels in a `DMPLEX`: 7194bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 7195bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 7196bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 7197bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 7198bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 7199bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 72006d7c9049SMatthew G. Knepley 7201c58f1c22SToby Isaac Level: intermediate 7202c58f1c22SToby Isaac 720360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMHasLabel()`, `DMGetLabelByNum()`, `DMAddLabel()`, `DMCreateLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 7204c58f1c22SToby Isaac @*/ 7205d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabel(DM dm, const char name[], DMLabel *label) 7206d71ae5a4SJacob Faibussowitsch { 72075d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7208c58f1c22SToby Isaac PetscBool hasLabel; 7209d67d17b1SMatthew G. Knepley const char *lname; 7210c58f1c22SToby Isaac 7211c58f1c22SToby Isaac PetscFunctionBegin; 7212c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72134f572ea9SToby Isaac PetscAssertPointer(name, 2); 72144f572ea9SToby Isaac PetscAssertPointer(label, 3); 7215c58f1c22SToby Isaac *label = NULL; 7216c58f1c22SToby Isaac while (next) { 72179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 72189566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 7219c58f1c22SToby Isaac if (hasLabel) { 7220c58f1c22SToby Isaac *label = next->label; 7221c58f1c22SToby Isaac break; 7222c58f1c22SToby Isaac } 7223c58f1c22SToby Isaac next = next->next; 7224c58f1c22SToby Isaac } 72253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7226c58f1c22SToby Isaac } 7227c58f1c22SToby Isaac 7228cc4c1da9SBarry Smith /*@ 7229bb7acecfSBarry Smith DMGetLabelByNum - Return the nth label on a `DM` 7230c58f1c22SToby Isaac 7231c58f1c22SToby Isaac Not Collective 7232c58f1c22SToby Isaac 7233c58f1c22SToby Isaac Input Parameters: 7234bb7acecfSBarry Smith + dm - The `DM` object 7235c58f1c22SToby Isaac - n - the label number 7236c58f1c22SToby Isaac 7237c58f1c22SToby Isaac Output Parameter: 7238c58f1c22SToby Isaac . label - the label 7239c58f1c22SToby Isaac 7240c58f1c22SToby Isaac Level: intermediate 7241c58f1c22SToby Isaac 72421cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7243c58f1c22SToby Isaac @*/ 7244d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelByNum(DM dm, PetscInt n, DMLabel *label) 7245d71ae5a4SJacob Faibussowitsch { 72465d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7247c58f1c22SToby Isaac PetscInt l = 0; 7248c58f1c22SToby Isaac 7249c58f1c22SToby Isaac PetscFunctionBegin; 7250c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72514f572ea9SToby Isaac PetscAssertPointer(label, 3); 7252c58f1c22SToby Isaac while (next) { 7253c58f1c22SToby Isaac if (l == n) { 7254c58f1c22SToby Isaac *label = next->label; 72553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7256c58f1c22SToby Isaac } 7257c58f1c22SToby Isaac ++l; 7258c58f1c22SToby Isaac next = next->next; 7259c58f1c22SToby Isaac } 726063a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 7261c58f1c22SToby Isaac } 7262c58f1c22SToby Isaac 7263cc4c1da9SBarry Smith /*@ 7264bb7acecfSBarry Smith DMAddLabel - Add the label to this `DM` 7265c58f1c22SToby Isaac 7266c58f1c22SToby Isaac Not Collective 7267c58f1c22SToby Isaac 7268c58f1c22SToby Isaac Input Parameters: 7269bb7acecfSBarry Smith + dm - The `DM` object 7270bb7acecfSBarry Smith - label - The `DMLabel` 7271c58f1c22SToby Isaac 7272c58f1c22SToby Isaac Level: developer 7273c58f1c22SToby Isaac 727460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7275c58f1c22SToby Isaac @*/ 7276d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddLabel(DM dm, DMLabel label) 7277d71ae5a4SJacob Faibussowitsch { 72785d80c0bfSVaclav Hapla DMLabelLink l, *p, tmpLabel; 7279c58f1c22SToby Isaac PetscBool hasLabel; 7280d67d17b1SMatthew G. Knepley const char *lname; 72815d80c0bfSVaclav Hapla PetscBool flg; 7282c58f1c22SToby Isaac 7283c58f1c22SToby Isaac PetscFunctionBegin; 7284c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72859566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &lname)); 72869566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, lname, &hasLabel)); 72877a8be351SBarry Smith PetscCheck(!hasLabel, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in this DM", lname); 72889566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(1, &tmpLabel)); 7289c58f1c22SToby Isaac tmpLabel->label = label; 7290c58f1c22SToby Isaac tmpLabel->output = PETSC_TRUE; 72915d80c0bfSVaclav Hapla for (p = &dm->labels; (l = *p); p = &l->next) { } 72925d80c0bfSVaclav Hapla *p = tmpLabel; 72939566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 72949566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 72955d80c0bfSVaclav Hapla if (flg) dm->depthLabel = label; 72969566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 7297ba2698f1SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 72983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7299c58f1c22SToby Isaac } 7300c58f1c22SToby Isaac 7301a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown 7302cc4c1da9SBarry Smith /*@ 73034a7ee7d0SMatthew G. Knepley DMSetLabel - Replaces the label of a given name, or ignores it if the name is not present 73044a7ee7d0SMatthew G. Knepley 73054a7ee7d0SMatthew G. Knepley Not Collective 73064a7ee7d0SMatthew G. Knepley 73074a7ee7d0SMatthew G. Knepley Input Parameters: 7308bb7acecfSBarry Smith + dm - The `DM` object 7309bb7acecfSBarry Smith - label - The `DMLabel`, having the same name, to substitute 73104a7ee7d0SMatthew G. Knepley 7311bb7acecfSBarry Smith Default labels in a `DMPLEX`: 7312bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 7313bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 7314bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 7315bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 7316bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 7317bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 73184a7ee7d0SMatthew G. Knepley 73194a7ee7d0SMatthew G. Knepley Level: intermediate 73204a7ee7d0SMatthew G. Knepley 73211cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 73224a7ee7d0SMatthew G. Knepley @*/ 7323d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabel(DM dm, DMLabel label) 7324d71ae5a4SJacob Faibussowitsch { 73254a7ee7d0SMatthew G. Knepley DMLabelLink next = dm->labels; 73264a7ee7d0SMatthew G. Knepley PetscBool hasLabel, flg; 73274a7ee7d0SMatthew G. Knepley const char *name, *lname; 73284a7ee7d0SMatthew G. Knepley 73294a7ee7d0SMatthew G. Knepley PetscFunctionBegin; 73304a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73314a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 73329566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 73334a7ee7d0SMatthew G. Knepley while (next) { 73349566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 73359566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 73364a7ee7d0SMatthew G. Knepley if (hasLabel) { 73379566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 73389566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 73394a7ee7d0SMatthew G. Knepley if (flg) dm->depthLabel = label; 73409566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 73414a7ee7d0SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 73429566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 73434a7ee7d0SMatthew G. Knepley next->label = label; 73444a7ee7d0SMatthew G. Knepley break; 73454a7ee7d0SMatthew G. Knepley } 73464a7ee7d0SMatthew G. Knepley next = next->next; 73474a7ee7d0SMatthew G. Knepley } 73483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 73494a7ee7d0SMatthew G. Knepley } 73504a7ee7d0SMatthew G. Knepley 7351cc4c1da9SBarry Smith /*@ 7352bb7acecfSBarry Smith DMRemoveLabel - Remove the label given by name from this `DM` 7353c58f1c22SToby Isaac 7354c58f1c22SToby Isaac Not Collective 7355c58f1c22SToby Isaac 7356c58f1c22SToby Isaac Input Parameters: 7357bb7acecfSBarry Smith + dm - The `DM` object 7358c58f1c22SToby Isaac - name - The label name 7359c58f1c22SToby Isaac 7360c58f1c22SToby Isaac Output Parameter: 736120f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent. Pass in `NULL` to call `DMLabelDestroy()` on the label, otherwise the 7362bb7acecfSBarry Smith caller is responsible for calling `DMLabelDestroy()`. 7363c58f1c22SToby Isaac 7364c58f1c22SToby Isaac Level: developer 7365c58f1c22SToby Isaac 73661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabelBySelf()` 7367c58f1c22SToby Isaac @*/ 7368d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabel(DM dm, const char name[], DMLabel *label) 7369d71ae5a4SJacob Faibussowitsch { 737095d578d6SVaclav Hapla DMLabelLink link, *pnext; 7371c58f1c22SToby Isaac PetscBool hasLabel; 7372d67d17b1SMatthew G. Knepley const char *lname; 7373c58f1c22SToby Isaac 7374c58f1c22SToby Isaac PetscFunctionBegin; 7375c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73764f572ea9SToby Isaac PetscAssertPointer(name, 2); 7377e5472504SVaclav Hapla if (label) { 73784f572ea9SToby Isaac PetscAssertPointer(label, 3); 7379c58f1c22SToby Isaac *label = NULL; 7380e5472504SVaclav Hapla } 73815d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 73829566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)link->label, &lname)); 73839566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 7384c58f1c22SToby Isaac if (hasLabel) { 738595d578d6SVaclav Hapla *pnext = link->next; /* Remove from list */ 73869566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &hasLabel)); 738795d578d6SVaclav Hapla if (hasLabel) dm->depthLabel = NULL; 73889566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &hasLabel)); 7389ba2698f1SMatthew G. Knepley if (hasLabel) dm->celltypeLabel = NULL; 739095d578d6SVaclav Hapla if (label) *label = link->label; 73919566063dSJacob Faibussowitsch else PetscCall(DMLabelDestroy(&link->label)); 73929566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7393c58f1c22SToby Isaac break; 7394c58f1c22SToby Isaac } 7395c58f1c22SToby Isaac } 73963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7397c58f1c22SToby Isaac } 7398c58f1c22SToby Isaac 7399306894acSVaclav Hapla /*@ 7400bb7acecfSBarry Smith DMRemoveLabelBySelf - Remove the label from this `DM` 7401306894acSVaclav Hapla 7402306894acSVaclav Hapla Not Collective 7403306894acSVaclav Hapla 7404306894acSVaclav Hapla Input Parameters: 7405bb7acecfSBarry Smith + dm - The `DM` object 7406bb7acecfSBarry Smith . label - The `DMLabel` to be removed from the `DM` 740720f4b53cSBarry Smith - failNotFound - Should it fail if the label is not found in the `DM`? 7408306894acSVaclav Hapla 7409306894acSVaclav Hapla Level: developer 7410306894acSVaclav Hapla 7411bb7acecfSBarry Smith Note: 7412306894acSVaclav Hapla Only exactly the same instance is removed if found, name match is ignored. 7413bb7acecfSBarry Smith If the `DM` has an exclusive reference to the label, the label gets destroyed and 7414306894acSVaclav Hapla *label nullified. 7415306894acSVaclav Hapla 74161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()` `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabel()` 7417306894acSVaclav Hapla @*/ 7418d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabelBySelf(DM dm, DMLabel *label, PetscBool failNotFound) 7419d71ae5a4SJacob Faibussowitsch { 742043e45a93SVaclav Hapla DMLabelLink link, *pnext; 7421306894acSVaclav Hapla PetscBool hasLabel = PETSC_FALSE; 7422306894acSVaclav Hapla 7423306894acSVaclav Hapla PetscFunctionBegin; 7424306894acSVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 74254f572ea9SToby Isaac PetscAssertPointer(label, 2); 74263ba16761SJacob Faibussowitsch if (!*label && !failNotFound) PetscFunctionReturn(PETSC_SUCCESS); 7427306894acSVaclav Hapla PetscValidHeaderSpecific(*label, DMLABEL_CLASSID, 2); 7428306894acSVaclav Hapla PetscValidLogicalCollectiveBool(dm, failNotFound, 3); 74295d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 743043e45a93SVaclav Hapla if (*label == link->label) { 7431306894acSVaclav Hapla hasLabel = PETSC_TRUE; 743243e45a93SVaclav Hapla *pnext = link->next; /* Remove from list */ 7433306894acSVaclav Hapla if (*label == dm->depthLabel) dm->depthLabel = NULL; 7434ba2698f1SMatthew G. Knepley if (*label == dm->celltypeLabel) dm->celltypeLabel = NULL; 743543e45a93SVaclav Hapla if (((PetscObject)link->label)->refct < 2) *label = NULL; /* nullify if exclusive reference */ 74369566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&link->label)); 74379566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7438306894acSVaclav Hapla break; 7439306894acSVaclav Hapla } 7440306894acSVaclav Hapla } 74417a8be351SBarry Smith PetscCheck(hasLabel || !failNotFound, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Given label not found in DM"); 74423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7443306894acSVaclav Hapla } 7444306894acSVaclav Hapla 7445cc4c1da9SBarry Smith /*@ 7446c58f1c22SToby Isaac DMGetLabelOutput - Get the output flag for a given label 7447c58f1c22SToby Isaac 7448c58f1c22SToby Isaac Not Collective 7449c58f1c22SToby Isaac 7450c58f1c22SToby Isaac Input Parameters: 7451bb7acecfSBarry Smith + dm - The `DM` object 7452c58f1c22SToby Isaac - name - The label name 7453c58f1c22SToby Isaac 7454c58f1c22SToby Isaac Output Parameter: 7455c58f1c22SToby Isaac . output - The flag for output 7456c58f1c22SToby Isaac 7457c58f1c22SToby Isaac Level: developer 7458c58f1c22SToby Isaac 74591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMSetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7460c58f1c22SToby Isaac @*/ 7461d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelOutput(DM dm, const char name[], PetscBool *output) 7462d71ae5a4SJacob Faibussowitsch { 74635d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7464d67d17b1SMatthew G. Knepley const char *lname; 7465c58f1c22SToby Isaac 7466c58f1c22SToby Isaac PetscFunctionBegin; 7467c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 74684f572ea9SToby Isaac PetscAssertPointer(name, 2); 74694f572ea9SToby Isaac PetscAssertPointer(output, 3); 7470c58f1c22SToby Isaac while (next) { 7471c58f1c22SToby Isaac PetscBool flg; 7472c58f1c22SToby Isaac 74739566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 74749566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 74759371c9d4SSatish Balay if (flg) { 74769371c9d4SSatish Balay *output = next->output; 74773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 74789371c9d4SSatish Balay } 7479c58f1c22SToby Isaac next = next->next; 7480c58f1c22SToby Isaac } 748198921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7482c58f1c22SToby Isaac } 7483c58f1c22SToby Isaac 7484cc4c1da9SBarry Smith /*@ 7485bb7acecfSBarry Smith DMSetLabelOutput - Set if a given label should be saved to a `PetscViewer` in calls to `DMView()` 7486c58f1c22SToby Isaac 7487c58f1c22SToby Isaac Not Collective 7488c58f1c22SToby Isaac 7489c58f1c22SToby Isaac Input Parameters: 7490bb7acecfSBarry Smith + dm - The `DM` object 7491c58f1c22SToby Isaac . name - The label name 7492bb7acecfSBarry Smith - output - `PETSC_TRUE` to save the label to the viewer 7493c58f1c22SToby Isaac 7494c58f1c22SToby Isaac Level: developer 7495c58f1c22SToby Isaac 74961cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetOutputFlag()`, `DMGetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7497c58f1c22SToby Isaac @*/ 7498d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelOutput(DM dm, const char name[], PetscBool output) 7499d71ae5a4SJacob Faibussowitsch { 75005d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7501d67d17b1SMatthew G. Knepley const char *lname; 7502c58f1c22SToby Isaac 7503c58f1c22SToby Isaac PetscFunctionBegin; 7504c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 75054f572ea9SToby Isaac PetscAssertPointer(name, 2); 7506c58f1c22SToby Isaac while (next) { 7507c58f1c22SToby Isaac PetscBool flg; 7508c58f1c22SToby Isaac 75099566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 75109566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 75119371c9d4SSatish Balay if (flg) { 75129371c9d4SSatish Balay next->output = output; 75133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 75149371c9d4SSatish Balay } 7515c58f1c22SToby Isaac next = next->next; 7516c58f1c22SToby Isaac } 751798921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7518c58f1c22SToby Isaac } 7519c58f1c22SToby Isaac 7520c58f1c22SToby Isaac /*@ 7521bb7acecfSBarry Smith DMCopyLabels - Copy labels from one `DM` mesh to another `DM` with a superset of the points 7522c58f1c22SToby Isaac 752320f4b53cSBarry Smith Collective 7524c58f1c22SToby Isaac 7525d8d19677SJose E. Roman Input Parameters: 7526bb7acecfSBarry Smith + dmA - The `DM` object with initial labels 7527bb7acecfSBarry Smith . dmB - The `DM` object to which labels are copied 7528bb7acecfSBarry Smith . mode - Copy labels by pointers (`PETSC_OWN_POINTER`) or duplicate them (`PETSC_COPY_VALUES`) 7529bb7acecfSBarry Smith . all - Copy all labels including "depth", "dim", and "celltype" (`PETSC_TRUE`) which are otherwise ignored (`PETSC_FALSE`) 7530bb7acecfSBarry Smith - emode - How to behave when a `DMLabel` in the source and destination `DM`s with the same name is encountered (see `DMCopyLabelsMode`) 7531c58f1c22SToby Isaac 7532c58f1c22SToby Isaac Level: intermediate 7533c58f1c22SToby Isaac 7534bb7acecfSBarry Smith Note: 75352cbb9b06SVaclav Hapla This is typically used when interpolating or otherwise adding to a mesh, or testing. 7536c58f1c22SToby Isaac 75371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode` 7538c58f1c22SToby Isaac @*/ 7539d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyLabels(DM dmA, DM dmB, PetscCopyMode mode, PetscBool all, DMCopyLabelsMode emode) 7540d71ae5a4SJacob Faibussowitsch { 75412cbb9b06SVaclav Hapla DMLabel label, labelNew, labelOld; 7542c58f1c22SToby Isaac const char *name; 7543c58f1c22SToby Isaac PetscBool flg; 75445d80c0bfSVaclav Hapla DMLabelLink link; 7545c58f1c22SToby Isaac 75465d80c0bfSVaclav Hapla PetscFunctionBegin; 75475d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 75485d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 75495d80c0bfSVaclav Hapla PetscValidLogicalCollectiveEnum(dmA, mode, 3); 75505d80c0bfSVaclav Hapla PetscValidLogicalCollectiveBool(dmA, all, 4); 75517a8be351SBarry Smith PetscCheck(mode != PETSC_USE_POINTER, PetscObjectComm((PetscObject)dmA), PETSC_ERR_SUP, "PETSC_USE_POINTER not supported for objects"); 75523ba16761SJacob Faibussowitsch if (dmA == dmB) PetscFunctionReturn(PETSC_SUCCESS); 75535d80c0bfSVaclav Hapla for (link = dmA->labels; link; link = link->next) { 75545d80c0bfSVaclav Hapla label = link->label; 75559566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 75565d80c0bfSVaclav Hapla if (!all) { 75579566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &flg)); 7558c58f1c22SToby Isaac if (flg) continue; 75599566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "dim", &flg)); 75607d5acc75SStefano Zampini if (flg) continue; 75619566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &flg)); 7562ba2698f1SMatthew G. Knepley if (flg) continue; 75635d80c0bfSVaclav Hapla } 75649566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmB, name, &labelOld)); 75652cbb9b06SVaclav Hapla if (labelOld) { 75662cbb9b06SVaclav Hapla switch (emode) { 7567d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_KEEP: 7568d71ae5a4SJacob Faibussowitsch continue; 7569d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_REPLACE: 7570d71ae5a4SJacob Faibussowitsch PetscCall(DMRemoveLabelBySelf(dmB, &labelOld, PETSC_TRUE)); 7571d71ae5a4SJacob Faibussowitsch break; 7572d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_FAIL: 7573d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in destination DM", name); 7574d71ae5a4SJacob Faibussowitsch default: 7575d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Unhandled DMCopyLabelsMode %d", (int)emode); 75762cbb9b06SVaclav Hapla } 75772cbb9b06SVaclav Hapla } 75785d80c0bfSVaclav Hapla if (mode == PETSC_COPY_VALUES) { 75799566063dSJacob Faibussowitsch PetscCall(DMLabelDuplicate(label, &labelNew)); 75805d80c0bfSVaclav Hapla } else { 75815d80c0bfSVaclav Hapla labelNew = label; 75825d80c0bfSVaclav Hapla } 75839566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dmB, labelNew)); 75849566063dSJacob Faibussowitsch if (mode == PETSC_COPY_VALUES) PetscCall(DMLabelDestroy(&labelNew)); 7585c58f1c22SToby Isaac } 75863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7587c58f1c22SToby Isaac } 7588461a15a0SLisandro Dalcin 7589609dae6eSVaclav Hapla /*@C 7590b4028c23SStefano Zampini DMCompareLabels - Compare labels between two `DM` objects 7591609dae6eSVaclav Hapla 759220f4b53cSBarry Smith Collective; No Fortran Support 7593609dae6eSVaclav Hapla 7594609dae6eSVaclav Hapla Input Parameters: 7595bb7acecfSBarry Smith + dm0 - First `DM` object 7596bb7acecfSBarry Smith - dm1 - Second `DM` object 7597609dae6eSVaclav Hapla 7598a4e35b19SJacob Faibussowitsch Output Parameters: 75995efe38ccSVaclav Hapla + equal - (Optional) Flag whether labels of dm0 and dm1 are the same 760020f4b53cSBarry Smith - message - (Optional) Message describing the difference, or `NULL` if there is no difference 7601609dae6eSVaclav Hapla 7602609dae6eSVaclav Hapla Level: intermediate 7603609dae6eSVaclav Hapla 7604609dae6eSVaclav Hapla Notes: 7605bb7acecfSBarry Smith The output flag equal will be the same on all processes. 7606bb7acecfSBarry Smith 760720f4b53cSBarry Smith If equal is passed as `NULL` and difference is found, an error is thrown on all processes. 7608bb7acecfSBarry Smith 760920f4b53cSBarry Smith Make sure to pass equal is `NULL` on all processes or none of them. 7610609dae6eSVaclav Hapla 76115efe38ccSVaclav Hapla The output message is set independently on each rank. 7612bb7acecfSBarry Smith 7613bb7acecfSBarry Smith message must be freed with `PetscFree()` 7614bb7acecfSBarry Smith 761520f4b53cSBarry Smith If message is passed as `NULL` and a difference is found, the difference description is printed to stderr in synchronized manner. 7616bb7acecfSBarry Smith 761720f4b53cSBarry Smith Make sure to pass message as `NULL` on all processes or no processes. 7618609dae6eSVaclav Hapla 7619609dae6eSVaclav Hapla Labels are matched by name. If the number of labels and their names are equal, 7620bb7acecfSBarry Smith `DMLabelCompare()` is used to compare each pair of labels with the same name. 7621609dae6eSVaclav Hapla 7622cc4c1da9SBarry Smith Developer Note: 7623cc4c1da9SBarry Smith Can automatically generate the Fortran stub because `message` must be freed with `PetscFree()` 7624cc4c1da9SBarry Smith 76251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`, `DMLabelCompare()` 7626609dae6eSVaclav Hapla @*/ 7627d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompareLabels(DM dm0, DM dm1, PetscBool *equal, char **message) 7628d71ae5a4SJacob Faibussowitsch { 76295efe38ccSVaclav Hapla PetscInt n, i; 7630609dae6eSVaclav Hapla char msg[PETSC_MAX_PATH_LEN] = ""; 76315efe38ccSVaclav Hapla PetscBool eq; 7632609dae6eSVaclav Hapla MPI_Comm comm; 76335efe38ccSVaclav Hapla PetscMPIInt rank; 7634609dae6eSVaclav Hapla 7635609dae6eSVaclav Hapla PetscFunctionBegin; 7636609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm0, DM_CLASSID, 1); 7637609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm1, DM_CLASSID, 2); 7638609dae6eSVaclav Hapla PetscCheckSameComm(dm0, 1, dm1, 2); 76394f572ea9SToby Isaac if (equal) PetscAssertPointer(equal, 3); 76404f572ea9SToby Isaac if (message) PetscAssertPointer(message, 4); 76419566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm0, &comm)); 76429566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 76435efe38ccSVaclav Hapla { 76445efe38ccSVaclav Hapla PetscInt n1; 76455efe38ccSVaclav Hapla 76469566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm0, &n)); 76479566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm1, &n1)); 76485efe38ccSVaclav Hapla eq = (PetscBool)(n == n1); 764948a46eb9SPierre Jolivet if (!eq) PetscCall(PetscSNPrintf(msg, sizeof(msg), "Number of labels in dm0 = %" PetscInt_FMT " != %" PetscInt_FMT " = Number of labels in dm1", n, n1)); 7650462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 76515efe38ccSVaclav Hapla if (!eq) goto finish; 76525efe38ccSVaclav Hapla } 76535efe38ccSVaclav Hapla for (i = 0; i < n; i++) { 7654609dae6eSVaclav Hapla DMLabel l0, l1; 7655609dae6eSVaclav Hapla const char *name; 7656609dae6eSVaclav Hapla char *msgInner; 7657609dae6eSVaclav Hapla 7658609dae6eSVaclav Hapla /* Ignore label order */ 76599566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm0, i, &l0)); 76609566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)l0, &name)); 76619566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm1, name, &l1)); 7662609dae6eSVaclav Hapla if (!l1) { 766363a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(msg, sizeof(msg), "Label \"%s\" (#%" PetscInt_FMT " in dm0) not found in dm1", name, i)); 76645efe38ccSVaclav Hapla eq = PETSC_FALSE; 76655efe38ccSVaclav Hapla break; 7666609dae6eSVaclav Hapla } 76679566063dSJacob Faibussowitsch PetscCall(DMLabelCompare(comm, l0, l1, &eq, &msgInner)); 76689566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(msg, msgInner, sizeof(msg))); 76699566063dSJacob Faibussowitsch PetscCall(PetscFree(msgInner)); 76705efe38ccSVaclav Hapla if (!eq) break; 7671609dae6eSVaclav Hapla } 7672462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 7673609dae6eSVaclav Hapla finish: 76745efe38ccSVaclav Hapla /* If message output arg not set, print to stderr */ 7675609dae6eSVaclav Hapla if (message) { 7676609dae6eSVaclav Hapla *message = NULL; 767748a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscStrallocpy(msg, message)); 76785efe38ccSVaclav Hapla } else { 767948a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscSynchronizedFPrintf(comm, PETSC_STDERR, "[%d] %s\n", rank, msg)); 76809566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, PETSC_STDERR)); 76815efe38ccSVaclav Hapla } 76825efe38ccSVaclav Hapla /* If same output arg not ser and labels are not equal, throw error */ 76835efe38ccSVaclav Hapla if (equal) *equal = eq; 76847a8be351SBarry Smith else PetscCheck(eq, comm, PETSC_ERR_ARG_INCOMP, "DMLabels are not the same in dm0 and dm1"); 76853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7686609dae6eSVaclav Hapla } 7687609dae6eSVaclav Hapla 7688d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue_Fast(DM dm, DMLabel *label, const char name[], PetscInt point, PetscInt value) 7689d71ae5a4SJacob Faibussowitsch { 7690461a15a0SLisandro Dalcin PetscFunctionBegin; 76914f572ea9SToby Isaac PetscAssertPointer(label, 2); 7692461a15a0SLisandro Dalcin if (!*label) { 76939566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 76949566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, label)); 7695461a15a0SLisandro Dalcin } 76969566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(*label, point, value)); 76973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7698461a15a0SLisandro Dalcin } 7699461a15a0SLisandro Dalcin 77000fdc7489SMatthew Knepley /* 77010fdc7489SMatthew Knepley Many mesh programs, such as Triangle and TetGen, allow only a single label for each mesh point. Therefore, we would 77020fdc7489SMatthew Knepley like to encode all label IDs using a single, universal label. We can do this by assigning an integer to every 77030fdc7489SMatthew Knepley (label, id) pair in the DM. 77040fdc7489SMatthew Knepley 77050fdc7489SMatthew Knepley However, a mesh point can have multiple labels, so we must separate all these values. We will assign a bit range to 77060fdc7489SMatthew Knepley each label. 77070fdc7489SMatthew Knepley */ 7708d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreate(DM dm, DMUniversalLabel *universal) 7709d71ae5a4SJacob Faibussowitsch { 77100fdc7489SMatthew Knepley DMUniversalLabel ul; 77110fdc7489SMatthew Knepley PetscBool *active; 77120fdc7489SMatthew Knepley PetscInt pStart, pEnd, p, Nl, l, m; 77130fdc7489SMatthew Knepley 77140fdc7489SMatthew Knepley PetscFunctionBegin; 77159566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &ul)); 77169566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "universal", &ul->label)); 77179566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 77189566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Nl, &active)); 77190fdc7489SMatthew Knepley ul->Nl = 0; 77200fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 77210fdc7489SMatthew Knepley PetscBool isdepth, iscelltype; 77220fdc7489SMatthew Knepley const char *name; 77230fdc7489SMatthew Knepley 77249566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 77259566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "depth", 6, &isdepth)); 77269566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "celltype", 9, &iscelltype)); 77270fdc7489SMatthew Knepley active[l] = !(isdepth || iscelltype) ? PETSC_TRUE : PETSC_FALSE; 77280fdc7489SMatthew Knepley if (active[l]) ++ul->Nl; 77290fdc7489SMatthew Knepley } 77309566063dSJacob Faibussowitsch PetscCall(PetscCalloc5(ul->Nl, &ul->names, ul->Nl, &ul->indices, ul->Nl + 1, &ul->offsets, ul->Nl + 1, &ul->bits, ul->Nl, &ul->masks)); 77310fdc7489SMatthew Knepley ul->Nv = 0; 77320fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 77330fdc7489SMatthew Knepley DMLabel label; 77340fdc7489SMatthew Knepley PetscInt nv; 77350fdc7489SMatthew Knepley const char *name; 77360fdc7489SMatthew Knepley 77370fdc7489SMatthew Knepley if (!active[l]) continue; 77389566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 77399566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 77409566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 77419566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(name, &ul->names[m])); 77420fdc7489SMatthew Knepley ul->indices[m] = l; 77430fdc7489SMatthew Knepley ul->Nv += nv; 77440fdc7489SMatthew Knepley ul->offsets[m + 1] = nv; 77450fdc7489SMatthew Knepley ul->bits[m + 1] = PetscCeilReal(PetscLog2Real(nv + 1)); 77460fdc7489SMatthew Knepley ++m; 77470fdc7489SMatthew Knepley } 77480fdc7489SMatthew Knepley for (l = 1; l <= ul->Nl; ++l) { 77490fdc7489SMatthew Knepley ul->offsets[l] = ul->offsets[l - 1] + ul->offsets[l]; 77500fdc7489SMatthew Knepley ul->bits[l] = ul->bits[l - 1] + ul->bits[l]; 77510fdc7489SMatthew Knepley } 77520fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 77530fdc7489SMatthew Knepley PetscInt b; 77540fdc7489SMatthew Knepley 77550fdc7489SMatthew Knepley ul->masks[l] = 0; 77560fdc7489SMatthew Knepley for (b = ul->bits[l]; b < ul->bits[l + 1]; ++b) ul->masks[l] |= 1 << b; 77570fdc7489SMatthew Knepley } 77589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ul->Nv, &ul->values)); 77590fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 77600fdc7489SMatthew Knepley DMLabel label; 77610fdc7489SMatthew Knepley IS valueIS; 77620fdc7489SMatthew Knepley const PetscInt *varr; 77630fdc7489SMatthew Knepley PetscInt nv, v; 77640fdc7489SMatthew Knepley 77650fdc7489SMatthew Knepley if (!active[l]) continue; 77669566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 77679566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 77689566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 77699566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &varr)); 7770ad540459SPierre Jolivet for (v = 0; v < nv; ++v) ul->values[ul->offsets[m] + v] = varr[v]; 77719566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &varr)); 77729566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 77739566063dSJacob Faibussowitsch PetscCall(PetscSortInt(nv, &ul->values[ul->offsets[m]])); 77740fdc7489SMatthew Knepley ++m; 77750fdc7489SMatthew Knepley } 77769566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 77770fdc7489SMatthew Knepley for (p = pStart; p < pEnd; ++p) { 77780fdc7489SMatthew Knepley PetscInt uval = 0; 77790fdc7489SMatthew Knepley PetscBool marked = PETSC_FALSE; 77800fdc7489SMatthew Knepley 77810fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 77820fdc7489SMatthew Knepley DMLabel label; 77830649b39aSStefano Zampini PetscInt val, defval, loc, nv; 77840fdc7489SMatthew Knepley 77850fdc7489SMatthew Knepley if (!active[l]) continue; 77869566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 77879566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, p, &val)); 77889566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defval)); 77899371c9d4SSatish Balay if (val == defval) { 77909371c9d4SSatish Balay ++m; 77919371c9d4SSatish Balay continue; 77929371c9d4SSatish Balay } 77930649b39aSStefano Zampini nv = ul->offsets[m + 1] - ul->offsets[m]; 77940fdc7489SMatthew Knepley marked = PETSC_TRUE; 77959566063dSJacob Faibussowitsch PetscCall(PetscFindInt(val, nv, &ul->values[ul->offsets[m]], &loc)); 779663a3b9bcSJacob Faibussowitsch PetscCheck(loc >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Label value %" PetscInt_FMT " not found in compression array", val); 77970fdc7489SMatthew Knepley uval += (loc + 1) << ul->bits[m]; 77980fdc7489SMatthew Knepley ++m; 77990fdc7489SMatthew Knepley } 78009566063dSJacob Faibussowitsch if (marked) PetscCall(DMLabelSetValue(ul->label, p, uval)); 78010fdc7489SMatthew Knepley } 78029566063dSJacob Faibussowitsch PetscCall(PetscFree(active)); 78030fdc7489SMatthew Knepley *universal = ul; 78043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78050fdc7489SMatthew Knepley } 78060fdc7489SMatthew Knepley 7807d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelDestroy(DMUniversalLabel *universal) 7808d71ae5a4SJacob Faibussowitsch { 78090fdc7489SMatthew Knepley PetscInt l; 78100fdc7489SMatthew Knepley 78110fdc7489SMatthew Knepley PetscFunctionBegin; 78129566063dSJacob Faibussowitsch for (l = 0; l < (*universal)->Nl; ++l) PetscCall(PetscFree((*universal)->names[l])); 78139566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&(*universal)->label)); 78149566063dSJacob Faibussowitsch PetscCall(PetscFree5((*universal)->names, (*universal)->indices, (*universal)->offsets, (*universal)->bits, (*universal)->masks)); 78159566063dSJacob Faibussowitsch PetscCall(PetscFree((*universal)->values)); 78169566063dSJacob Faibussowitsch PetscCall(PetscFree(*universal)); 78170fdc7489SMatthew Knepley *universal = NULL; 78183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78190fdc7489SMatthew Knepley } 78200fdc7489SMatthew Knepley 7821d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelGetLabel(DMUniversalLabel ul, DMLabel *ulabel) 7822d71ae5a4SJacob Faibussowitsch { 78230fdc7489SMatthew Knepley PetscFunctionBegin; 78244f572ea9SToby Isaac PetscAssertPointer(ulabel, 2); 78250fdc7489SMatthew Knepley *ulabel = ul->label; 78263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78270fdc7489SMatthew Knepley } 78280fdc7489SMatthew Knepley 7829d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreateLabels(DMUniversalLabel ul, PetscBool preserveOrder, DM dm) 7830d71ae5a4SJacob Faibussowitsch { 78310fdc7489SMatthew Knepley PetscInt Nl = ul->Nl, l; 78320fdc7489SMatthew Knepley 78330fdc7489SMatthew Knepley PetscFunctionBegin; 7834064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dm, DM_CLASSID, 3); 78350fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 78369566063dSJacob Faibussowitsch if (preserveOrder) PetscCall(DMCreateLabelAtIndex(dm, ul->indices[l], ul->names[l])); 78379566063dSJacob Faibussowitsch else PetscCall(DMCreateLabel(dm, ul->names[l])); 78380fdc7489SMatthew Knepley } 78390fdc7489SMatthew Knepley if (preserveOrder) { 78400fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 78410fdc7489SMatthew Knepley const char *name; 78420fdc7489SMatthew Knepley PetscBool match; 78430fdc7489SMatthew Knepley 78449566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, ul->indices[l], &name)); 78459566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, ul->names[l], &match)); 784663a3b9bcSJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Label %" PetscInt_FMT " name %s does not match new name %s", l, name, ul->names[l]); 78470fdc7489SMatthew Knepley } 78480fdc7489SMatthew Knepley } 78493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78500fdc7489SMatthew Knepley } 78510fdc7489SMatthew Knepley 7852d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelSetLabelValue(DMUniversalLabel ul, DM dm, PetscBool useIndex, PetscInt p, PetscInt value) 7853d71ae5a4SJacob Faibussowitsch { 78540fdc7489SMatthew Knepley PetscInt l; 78550fdc7489SMatthew Knepley 78560fdc7489SMatthew Knepley PetscFunctionBegin; 78570fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 78580fdc7489SMatthew Knepley DMLabel label; 78590fdc7489SMatthew Knepley PetscInt lval = (value & ul->masks[l]) >> ul->bits[l]; 78600fdc7489SMatthew Knepley 78610fdc7489SMatthew Knepley if (lval) { 78629566063dSJacob Faibussowitsch if (useIndex) PetscCall(DMGetLabelByNum(dm, ul->indices[l], &label)); 78639566063dSJacob Faibussowitsch else PetscCall(DMGetLabel(dm, ul->names[l], &label)); 78649566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, ul->values[ul->offsets[l] + lval - 1])); 78650fdc7489SMatthew Knepley } 78660fdc7489SMatthew Knepley } 78673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78680fdc7489SMatthew Knepley } 7869a8fb8f29SToby Isaac 7870a8fb8f29SToby Isaac /*@ 7871bb7acecfSBarry Smith DMGetCoarseDM - Get the coarse `DM`from which this `DM` was obtained by refinement 7872bb7acecfSBarry Smith 787320f4b53cSBarry Smith Not Collective 7874a8fb8f29SToby Isaac 7875a8fb8f29SToby Isaac Input Parameter: 7876bb7acecfSBarry Smith . dm - The `DM` object 7877a8fb8f29SToby Isaac 7878a8fb8f29SToby Isaac Output Parameter: 7879bb7acecfSBarry Smith . cdm - The coarse `DM` 7880a8fb8f29SToby Isaac 7881a8fb8f29SToby Isaac Level: intermediate 7882a8fb8f29SToby Isaac 78831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetCoarseDM()`, `DMCoarsen()` 7884a8fb8f29SToby Isaac @*/ 7885d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarseDM(DM dm, DM *cdm) 7886d71ae5a4SJacob Faibussowitsch { 7887a8fb8f29SToby Isaac PetscFunctionBegin; 7888a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 78894f572ea9SToby Isaac PetscAssertPointer(cdm, 2); 7890a8fb8f29SToby Isaac *cdm = dm->coarseMesh; 78913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7892a8fb8f29SToby Isaac } 7893a8fb8f29SToby Isaac 7894a8fb8f29SToby Isaac /*@ 7895bb7acecfSBarry Smith DMSetCoarseDM - Set the coarse `DM` from which this `DM` was obtained by refinement 7896a8fb8f29SToby Isaac 7897a8fb8f29SToby Isaac Input Parameters: 7898bb7acecfSBarry Smith + dm - The `DM` object 7899bb7acecfSBarry Smith - cdm - The coarse `DM` 7900a8fb8f29SToby Isaac 7901a8fb8f29SToby Isaac Level: intermediate 7902a8fb8f29SToby Isaac 7903bb7acecfSBarry Smith Note: 7904bb7acecfSBarry Smith Normally this is set automatically by `DMRefine()` 7905bb7acecfSBarry Smith 79061cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCoarseDM()`, `DMCoarsen()`, `DMSetRefine()`, `DMSetFineDM()` 7907a8fb8f29SToby Isaac @*/ 7908d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarseDM(DM dm, DM cdm) 7909d71ae5a4SJacob Faibussowitsch { 7910a8fb8f29SToby Isaac PetscFunctionBegin; 7911a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7912a8fb8f29SToby Isaac if (cdm) PetscValidHeaderSpecific(cdm, DM_CLASSID, 2); 791389d734beSBarry Smith if (dm == cdm) cdm = NULL; 79149566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)cdm)); 79159566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->coarseMesh)); 7916a8fb8f29SToby Isaac dm->coarseMesh = cdm; 79173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7918a8fb8f29SToby Isaac } 7919a8fb8f29SToby Isaac 792088bdff64SToby Isaac /*@ 7921bb7acecfSBarry Smith DMGetFineDM - Get the fine mesh from which this `DM` was obtained by coarsening 792288bdff64SToby Isaac 792388bdff64SToby Isaac Input Parameter: 7924bb7acecfSBarry Smith . dm - The `DM` object 792588bdff64SToby Isaac 792688bdff64SToby Isaac Output Parameter: 7927bb7acecfSBarry Smith . fdm - The fine `DM` 792888bdff64SToby Isaac 792988bdff64SToby Isaac Level: intermediate 793088bdff64SToby Isaac 79311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetFineDM()`, `DMCoarsen()`, `DMRefine()` 793288bdff64SToby Isaac @*/ 7933d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFineDM(DM dm, DM *fdm) 7934d71ae5a4SJacob Faibussowitsch { 793588bdff64SToby Isaac PetscFunctionBegin; 793688bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 79374f572ea9SToby Isaac PetscAssertPointer(fdm, 2); 793888bdff64SToby Isaac *fdm = dm->fineMesh; 79393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 794088bdff64SToby Isaac } 794188bdff64SToby Isaac 794288bdff64SToby Isaac /*@ 7943bb7acecfSBarry Smith DMSetFineDM - Set the fine mesh from which this was obtained by coarsening 794488bdff64SToby Isaac 794588bdff64SToby Isaac Input Parameters: 7946bb7acecfSBarry Smith + dm - The `DM` object 7947bb7acecfSBarry Smith - fdm - The fine `DM` 794888bdff64SToby Isaac 7949bb7acecfSBarry Smith Level: developer 795088bdff64SToby Isaac 7951bb7acecfSBarry Smith Note: 7952bb7acecfSBarry Smith Normally this is set automatically by `DMCoarsen()` 7953bb7acecfSBarry Smith 79541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFineDM()`, `DMCoarsen()`, `DMRefine()` 795588bdff64SToby Isaac @*/ 7956d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFineDM(DM dm, DM fdm) 7957d71ae5a4SJacob Faibussowitsch { 795888bdff64SToby Isaac PetscFunctionBegin; 795988bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 796088bdff64SToby Isaac if (fdm) PetscValidHeaderSpecific(fdm, DM_CLASSID, 2); 796189d734beSBarry Smith if (dm == fdm) fdm = NULL; 79629566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fdm)); 79639566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->fineMesh)); 796488bdff64SToby Isaac dm->fineMesh = fdm; 79653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 796688bdff64SToby Isaac } 796788bdff64SToby Isaac 7968a6ba4734SToby Isaac /*@C 7969bb7acecfSBarry Smith DMAddBoundary - Add a boundary condition to a model represented by a `DM` 7970a6ba4734SToby Isaac 797120f4b53cSBarry Smith Collective 7972783e2ec8SMatthew G. Knepley 7973a6ba4734SToby Isaac Input Parameters: 7974bb7acecfSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 7975bb7acecfSBarry Smith . type - The type of condition, e.g. `DM_BC_ESSENTIAL_ANALYTIC`, `DM_BC_ESSENTIAL_FIELD` (Dirichlet), or `DM_BC_NATURAL` (Neumann) 7976a6ba4734SToby Isaac . name - The BC name 797745480ffeSMatthew G. Knepley . label - The label defining constrained points 7978bb7acecfSBarry Smith . Nv - The number of `DMLabel` values for constrained points 797945480ffeSMatthew G. Knepley . values - An array of values for constrained points 7980a6ba4734SToby Isaac . field - The field to constrain 798145480ffeSMatthew G. Knepley . Nc - The number of constrained field components (0 will constrain all fields) 7982a6ba4734SToby Isaac . comps - An array of constrained component numbers 7983a6ba4734SToby Isaac . bcFunc - A pointwise function giving boundary values 798456cf3b9cSMatthew G. Knepley . bcFunc_t - A pointwise function giving the time deriative of the boundary values, or NULL 7985a6ba4734SToby Isaac - ctx - An optional user context for bcFunc 7986a6ba4734SToby Isaac 798745480ffeSMatthew G. Knepley Output Parameter: 798845480ffeSMatthew G. Knepley . bd - (Optional) Boundary number 798945480ffeSMatthew G. Knepley 7990a6ba4734SToby Isaac Options Database Keys: 7991a6ba4734SToby Isaac + -bc_<boundary name> <num> - Overrides the boundary ids 7992a6ba4734SToby Isaac - -bc_<boundary name>_comp <num> - Overrides the boundary components 7993a6ba4734SToby Isaac 799420f4b53cSBarry Smith Level: intermediate 799520f4b53cSBarry Smith 7996bb7acecfSBarry Smith Notes: 7997aeebefc2SPierre Jolivet Both bcFunc and bcFunc_t will depend on the boundary condition type. If the type if `DM_BC_ESSENTIAL`, then the calling sequence is\: 799873ff1848SBarry Smith .vb 799973ff1848SBarry Smith void bcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[]) 800073ff1848SBarry Smith .ve 800156cf3b9cSMatthew G. Knepley 8002a4e35b19SJacob Faibussowitsch If the type is `DM_BC_ESSENTIAL_FIELD` or other _FIELD value, then the calling sequence is\: 800356cf3b9cSMatthew G. Knepley 800420f4b53cSBarry Smith .vb 800520f4b53cSBarry Smith void bcFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux, 800620f4b53cSBarry Smith const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 800720f4b53cSBarry Smith const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 800820f4b53cSBarry Smith PetscReal time, const PetscReal x[], PetscScalar bcval[]) 800920f4b53cSBarry Smith .ve 801056cf3b9cSMatthew G. Knepley + dim - the spatial dimension 801156cf3b9cSMatthew G. Knepley . Nf - the number of fields 801256cf3b9cSMatthew G. Knepley . uOff - the offset into u[] and u_t[] for each field 801356cf3b9cSMatthew G. Knepley . uOff_x - the offset into u_x[] for each field 801456cf3b9cSMatthew G. Knepley . u - each field evaluated at the current point 801556cf3b9cSMatthew G. Knepley . u_t - the time derivative of each field evaluated at the current point 801656cf3b9cSMatthew G. Knepley . u_x - the gradient of each field evaluated at the current point 801756cf3b9cSMatthew G. Knepley . aOff - the offset into a[] and a_t[] for each auxiliary field 801856cf3b9cSMatthew G. Knepley . aOff_x - the offset into a_x[] for each auxiliary field 801956cf3b9cSMatthew G. Knepley . a - each auxiliary field evaluated at the current point 802056cf3b9cSMatthew G. Knepley . a_t - the time derivative of each auxiliary field evaluated at the current point 802156cf3b9cSMatthew G. Knepley . a_x - the gradient of auxiliary each field evaluated at the current point 802256cf3b9cSMatthew G. Knepley . t - current time 802356cf3b9cSMatthew G. Knepley . x - coordinates of the current point 802456cf3b9cSMatthew G. Knepley . numConstants - number of constant parameters 802556cf3b9cSMatthew G. Knepley . constants - constant parameters 802656cf3b9cSMatthew G. Knepley - bcval - output values at the current point 802756cf3b9cSMatthew G. Knepley 80281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DSGetBoundary()`, `PetscDSAddBoundary()` 8029a6ba4734SToby Isaac @*/ 8030d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddBoundary(DM dm, DMBoundaryConditionType type, const char name[], DMLabel label, PetscInt Nv, const PetscInt values[], PetscInt field, PetscInt Nc, const PetscInt comps[], void (*bcFunc)(void), void (*bcFunc_t)(void), void *ctx, PetscInt *bd) 8031d71ae5a4SJacob Faibussowitsch { 8032e5e52638SMatthew G. Knepley PetscDS ds; 8033a6ba4734SToby Isaac 8034a6ba4734SToby Isaac PetscFunctionBegin; 8035a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8036783e2ec8SMatthew G. Knepley PetscValidLogicalCollectiveEnum(dm, type, 2); 803745480ffeSMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 4); 803845480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nv, 5); 803945480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, field, 7); 804045480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 8); 804101a5d20dSJed Brown PetscCheck(!dm->localSection, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot add boundary to DM after creating local section"); 80429566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 8043799db056SMatthew G. Knepley /* Complete label */ 8044799db056SMatthew G. Knepley if (label) { 8045799db056SMatthew G. Knepley PetscObject obj; 8046799db056SMatthew G. Knepley PetscClassId id; 8047799db056SMatthew G. Knepley 8048799db056SMatthew G. Knepley PetscCall(DMGetField(dm, field, NULL, &obj)); 8049799db056SMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 8050799db056SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 8051799db056SMatthew G. Knepley DM plex; 8052799db056SMatthew G. Knepley 8053799db056SMatthew G. Knepley PetscCall(DMConvert(dm, DMPLEX, &plex)); 8054799db056SMatthew G. Knepley if (plex) PetscCall(DMPlexLabelComplete(plex, label)); 8055799db056SMatthew G. Knepley PetscCall(DMDestroy(&plex)); 8056799db056SMatthew G. Knepley } 8057799db056SMatthew G. Knepley } 80589566063dSJacob Faibussowitsch PetscCall(PetscDSAddBoundary(ds, type, name, label, Nv, values, field, Nc, comps, bcFunc, bcFunc_t, ctx, bd)); 80593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8060a6ba4734SToby Isaac } 8061a6ba4734SToby Isaac 806245480ffeSMatthew G. Knepley /* TODO Remove this since now the structures are the same */ 8063d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPopulateBoundary(DM dm) 8064d71ae5a4SJacob Faibussowitsch { 8065e5e52638SMatthew G. Knepley PetscDS ds; 8066dff059c6SToby Isaac DMBoundary *lastnext; 8067e6f8dbb6SToby Isaac DSBoundary dsbound; 8068e6f8dbb6SToby Isaac 8069e6f8dbb6SToby Isaac PetscFunctionBegin; 80709566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 8071e5e52638SMatthew G. Knepley dsbound = ds->boundary; 807247a1f5adSToby Isaac if (dm->boundary) { 807347a1f5adSToby Isaac DMBoundary next = dm->boundary; 807447a1f5adSToby Isaac 807547a1f5adSToby Isaac /* quick check to see if the PetscDS has changed */ 80763ba16761SJacob Faibussowitsch if (next->dsboundary == dsbound) PetscFunctionReturn(PETSC_SUCCESS); 807747a1f5adSToby Isaac /* the PetscDS has changed: tear down and rebuild */ 807847a1f5adSToby Isaac while (next) { 807947a1f5adSToby Isaac DMBoundary b = next; 808047a1f5adSToby Isaac 808147a1f5adSToby Isaac next = b->next; 80829566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 8083a6ba4734SToby Isaac } 808447a1f5adSToby Isaac dm->boundary = NULL; 8085a6ba4734SToby Isaac } 808647a1f5adSToby Isaac 8087f4f49eeaSPierre Jolivet lastnext = &dm->boundary; 8088e6f8dbb6SToby Isaac while (dsbound) { 8089e6f8dbb6SToby Isaac DMBoundary dmbound; 8090e6f8dbb6SToby Isaac 80919566063dSJacob Faibussowitsch PetscCall(PetscNew(&dmbound)); 8092e6f8dbb6SToby Isaac dmbound->dsboundary = dsbound; 809345480ffeSMatthew G. Knepley dmbound->label = dsbound->label; 809447a1f5adSToby Isaac /* push on the back instead of the front so that it is in the same order as in the PetscDS */ 8095dff059c6SToby Isaac *lastnext = dmbound; 8096f4f49eeaSPierre Jolivet lastnext = &dmbound->next; 8097dff059c6SToby Isaac dsbound = dsbound->next; 8098a6ba4734SToby Isaac } 80993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8100a6ba4734SToby Isaac } 8101a6ba4734SToby Isaac 8102bb7acecfSBarry Smith /* TODO: missing manual page */ 8103d71ae5a4SJacob Faibussowitsch PetscErrorCode DMIsBoundaryPoint(DM dm, PetscInt point, PetscBool *isBd) 8104d71ae5a4SJacob Faibussowitsch { 8105b95f2879SToby Isaac DMBoundary b; 8106a6ba4734SToby Isaac 8107a6ba4734SToby Isaac PetscFunctionBegin; 8108a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 81094f572ea9SToby Isaac PetscAssertPointer(isBd, 3); 8110a6ba4734SToby Isaac *isBd = PETSC_FALSE; 81119566063dSJacob Faibussowitsch PetscCall(DMPopulateBoundary(dm)); 8112b95f2879SToby Isaac b = dm->boundary; 811357508eceSPierre Jolivet while (b && !*isBd) { 8114e6f8dbb6SToby Isaac DMLabel label = b->label; 8115e6f8dbb6SToby Isaac DSBoundary dsb = b->dsboundary; 8116a6ba4734SToby Isaac PetscInt i; 8117a6ba4734SToby Isaac 811845480ffeSMatthew G. Knepley if (label) { 811957508eceSPierre Jolivet for (i = 0; i < dsb->Nv && !*isBd; ++i) PetscCall(DMLabelStratumHasPoint(label, dsb->values[i], point, isBd)); 8120a6ba4734SToby Isaac } 8121a6ba4734SToby Isaac b = b->next; 8122a6ba4734SToby Isaac } 81233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8124a6ba4734SToby Isaac } 81254d6f44ffSToby Isaac 81264d6f44ffSToby Isaac /*@C 8127bb7acecfSBarry Smith DMProjectFunction - This projects the given function into the function space provided by a `DM`, putting the coefficients in a global vector. 8128a6e0b375SMatthew G. Knepley 812920f4b53cSBarry Smith Collective 81304d6f44ffSToby Isaac 81314d6f44ffSToby Isaac Input Parameters: 8132bb7acecfSBarry Smith + dm - The `DM` 81330709b2feSToby Isaac . time - The time 81344d6f44ffSToby Isaac . funcs - The coordinate functions to evaluate, one per field 81354d6f44ffSToby Isaac . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 81364d6f44ffSToby Isaac - mode - The insertion mode for values 81374d6f44ffSToby Isaac 81384d6f44ffSToby Isaac Output Parameter: 81394d6f44ffSToby Isaac . X - vector 81404d6f44ffSToby Isaac 814120f4b53cSBarry Smith Calling sequence of `funcs`: 81424d6f44ffSToby Isaac + dim - The spatial dimension 81438ec8862eSJed Brown . time - The time at which to sample 81444d6f44ffSToby Isaac . x - The coordinates 814577b739a6SMatthew Knepley . Nc - The number of components 81464d6f44ffSToby Isaac . u - The output field values 81474d6f44ffSToby Isaac - ctx - optional user-defined function context 81484d6f44ffSToby Isaac 81494d6f44ffSToby Isaac Level: developer 81504d6f44ffSToby Isaac 8151bb7acecfSBarry Smith Developer Notes: 8152bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8153bb7acecfSBarry Smith 8154bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8155bb7acecfSBarry Smith 81561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 81574d6f44ffSToby Isaac @*/ 8158a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunction(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X) 8159d71ae5a4SJacob Faibussowitsch { 81604d6f44ffSToby Isaac Vec localX; 81614d6f44ffSToby Isaac 81624d6f44ffSToby Isaac PetscFunctionBegin; 81634d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8164708be2fdSJed Brown PetscCall(PetscLogEventBegin(DM_ProjectFunction, dm, X, 0, 0)); 81659566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 8166f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 81679566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, mode, localX)); 81689566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 81699566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 81709566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 8171708be2fdSJed Brown PetscCall(PetscLogEventEnd(DM_ProjectFunction, dm, X, 0, 0)); 81723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 81734d6f44ffSToby Isaac } 81744d6f44ffSToby Isaac 8175a6e0b375SMatthew G. Knepley /*@C 8176bb7acecfSBarry Smith DMProjectFunctionLocal - This projects the given function into the function space provided by a `DM`, putting the coefficients in a local vector. 8177a6e0b375SMatthew G. Knepley 817820f4b53cSBarry Smith Not Collective 8179a6e0b375SMatthew G. Knepley 8180a6e0b375SMatthew G. Knepley Input Parameters: 8181bb7acecfSBarry Smith + dm - The `DM` 8182a6e0b375SMatthew G. Knepley . time - The time 8183a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8184a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 8185a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8186a6e0b375SMatthew G. Knepley 8187a6e0b375SMatthew G. Knepley Output Parameter: 8188a6e0b375SMatthew G. Knepley . localX - vector 8189a6e0b375SMatthew G. Knepley 819020f4b53cSBarry Smith Calling sequence of `funcs`: 8191a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8192a4e35b19SJacob Faibussowitsch . time - The current timestep 8193a6e0b375SMatthew G. Knepley . x - The coordinates 819477b739a6SMatthew Knepley . Nc - The number of components 8195a6e0b375SMatthew G. Knepley . u - The output field values 8196a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8197a6e0b375SMatthew G. Knepley 8198a6e0b375SMatthew G. Knepley Level: developer 8199a6e0b375SMatthew G. Knepley 8200bb7acecfSBarry Smith Developer Notes: 8201bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8202bb7acecfSBarry Smith 8203bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8204bb7acecfSBarry Smith 82051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 8206a6e0b375SMatthew G. Knepley @*/ 8207a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX) 8208d71ae5a4SJacob Faibussowitsch { 82094d6f44ffSToby Isaac PetscFunctionBegin; 82104d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8211064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 8212fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfunctionlocal, time, funcs, ctxs, mode, localX); 82133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82144d6f44ffSToby Isaac } 82154d6f44ffSToby Isaac 8216a6e0b375SMatthew G. Knepley /*@C 8217bb7acecfSBarry Smith DMProjectFunctionLabel - This projects the given function into the function space provided by the `DM`, putting the coefficients in a global vector, setting values only for points in the given label. 8218a6e0b375SMatthew G. Knepley 821920f4b53cSBarry Smith Collective 8220a6e0b375SMatthew G. Knepley 8221a6e0b375SMatthew G. Knepley Input Parameters: 8222bb7acecfSBarry Smith + dm - The `DM` 8223a6e0b375SMatthew G. Knepley . time - The time 8224a4e35b19SJacob Faibussowitsch . numIds - The number of ids 8225a4e35b19SJacob Faibussowitsch . ids - The ids 8226a4e35b19SJacob Faibussowitsch . Nc - The number of components 8227a4e35b19SJacob Faibussowitsch . comps - The components 8228bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8229a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8230bb7acecfSBarry Smith . ctxs - Optional array of contexts to pass to each coordinate function. ctxs may be null. 8231a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8232a6e0b375SMatthew G. Knepley 8233a6e0b375SMatthew G. Knepley Output Parameter: 8234a6e0b375SMatthew G. Knepley . X - vector 8235a6e0b375SMatthew G. Knepley 823620f4b53cSBarry Smith Calling sequence of `funcs`: 8237a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8238a4e35b19SJacob Faibussowitsch . time - The current timestep 8239a6e0b375SMatthew G. Knepley . x - The coordinates 824077b739a6SMatthew Knepley . Nc - The number of components 8241a6e0b375SMatthew G. Knepley . u - The output field values 8242a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8243a6e0b375SMatthew G. Knepley 8244a6e0b375SMatthew G. Knepley Level: developer 8245a6e0b375SMatthew G. Knepley 8246bb7acecfSBarry Smith Developer Notes: 8247bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8248bb7acecfSBarry Smith 8249bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8250bb7acecfSBarry Smith 82511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`, `DMComputeL2Diff()` 8252a6e0b375SMatthew G. Knepley @*/ 8253a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X) 8254d71ae5a4SJacob Faibussowitsch { 82552c53366bSMatthew G. Knepley Vec localX; 82562c53366bSMatthew G. Knepley 82572c53366bSMatthew G. Knepley PetscFunctionBegin; 82582c53366bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 82599566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 8260f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 82619566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX)); 82629566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 82639566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 82649566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 82653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82662c53366bSMatthew G. Knepley } 82672c53366bSMatthew G. Knepley 8268a6e0b375SMatthew G. Knepley /*@C 8269bb7acecfSBarry Smith DMProjectFunctionLabelLocal - This projects the given function into the function space provided by the `DM`, putting the coefficients in a local vector, setting values only for points in the given label. 8270a6e0b375SMatthew G. Knepley 827120f4b53cSBarry Smith Not Collective 8272a6e0b375SMatthew G. Knepley 8273a6e0b375SMatthew G. Knepley Input Parameters: 8274bb7acecfSBarry Smith + dm - The `DM` 8275a6e0b375SMatthew G. Knepley . time - The time 8276bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8277a4e35b19SJacob Faibussowitsch . numIds - The number of ids 8278a4e35b19SJacob Faibussowitsch . ids - The ids 8279a4e35b19SJacob Faibussowitsch . Nc - The number of components 8280a4e35b19SJacob Faibussowitsch . comps - The components 8281a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8282a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 8283a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8284a6e0b375SMatthew G. Knepley 8285a6e0b375SMatthew G. Knepley Output Parameter: 8286a6e0b375SMatthew G. Knepley . localX - vector 8287a6e0b375SMatthew G. Knepley 828820f4b53cSBarry Smith Calling sequence of `funcs`: 8289a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8290a4e35b19SJacob Faibussowitsch . time - The current time 8291a6e0b375SMatthew G. Knepley . x - The coordinates 829277b739a6SMatthew Knepley . Nc - The number of components 8293a6e0b375SMatthew G. Knepley . u - The output field values 8294a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8295a6e0b375SMatthew G. Knepley 8296a6e0b375SMatthew G. Knepley Level: developer 8297a6e0b375SMatthew G. Knepley 8298bb7acecfSBarry Smith Developer Notes: 8299bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8300bb7acecfSBarry Smith 8301bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8302bb7acecfSBarry Smith 83031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 8304a6e0b375SMatthew G. Knepley @*/ 8305a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX) 8306d71ae5a4SJacob Faibussowitsch { 83074d6f44ffSToby Isaac PetscFunctionBegin; 83084d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8309064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8310fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfunctionlabellocal, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX); 83113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 83124d6f44ffSToby Isaac } 83132716604bSToby Isaac 8314a6e0b375SMatthew G. Knepley /*@C 8315bb7acecfSBarry Smith DMProjectFieldLocal - This projects the given function of the input fields into the function space provided by the `DM`, putting the coefficients in a local vector. 8316a6e0b375SMatthew G. Knepley 831720f4b53cSBarry Smith Not Collective 8318a6e0b375SMatthew G. Knepley 8319a6e0b375SMatthew G. Knepley Input Parameters: 8320bb7acecfSBarry Smith + dm - The `DM` 8321a6e0b375SMatthew G. Knepley . time - The time 832220f4b53cSBarry Smith . localU - The input field vector; may be `NULL` if projection is defined purely by coordinates 8323a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8324a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8325a6e0b375SMatthew G. Knepley 8326a6e0b375SMatthew G. Knepley Output Parameter: 8327a6e0b375SMatthew G. Knepley . localX - The output vector 8328a6e0b375SMatthew G. Knepley 832920f4b53cSBarry Smith Calling sequence of `funcs`: 8330a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8331a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8332a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8333a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8334a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8335a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8336a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8337a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8338a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8339a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8340a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8341a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8342a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8343a6e0b375SMatthew G. Knepley . t - The current time 8344a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8345a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8346a6e0b375SMatthew G. Knepley . constants - The value of each constant 8347a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8348a6e0b375SMatthew G. Knepley 834973ff1848SBarry Smith Level: intermediate 835073ff1848SBarry Smith 8351bb7acecfSBarry Smith Note: 8352bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8353bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8354bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8355a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8356a6e0b375SMatthew G. Knepley 8357bb7acecfSBarry Smith Developer Notes: 8358bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8359bb7acecfSBarry Smith 8360bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8361bb7acecfSBarry Smith 8362a4e35b19SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, 8363a4e35b19SJacob Faibussowitsch `DMProjectFunction()`, `DMComputeL2Diff()` 8364a6e0b375SMatthew G. Knepley @*/ 8365a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLocal(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8366d71ae5a4SJacob Faibussowitsch { 83678c6c5593SMatthew G. Knepley PetscFunctionBegin; 83688c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8369eb8f539aSJed Brown if (localU) PetscValidHeaderSpecific(localU, VEC_CLASSID, 3); 83708c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 8371fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfieldlocal, time, localU, funcs, mode, localX); 83723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 83738c6c5593SMatthew G. Knepley } 83748c6c5593SMatthew G. Knepley 8375a6e0b375SMatthew G. Knepley /*@C 8376a6e0b375SMatthew G. Knepley DMProjectFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain specified by the label. 8377a6e0b375SMatthew G. Knepley 837820f4b53cSBarry Smith Not Collective 8379a6e0b375SMatthew G. Knepley 8380a6e0b375SMatthew G. Knepley Input Parameters: 8381bb7acecfSBarry Smith + dm - The `DM` 8382a6e0b375SMatthew G. Knepley . time - The time 8383bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8384a6e0b375SMatthew G. Knepley . numIds - The number of label ids to use 8385a6e0b375SMatthew G. Knepley . ids - The label ids to use for marking 8386bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 838720f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8388a6e0b375SMatthew G. Knepley . localU - The input field vector 8389a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8390a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8391a6e0b375SMatthew G. Knepley 8392a6e0b375SMatthew G. Knepley Output Parameter: 8393a6e0b375SMatthew G. Knepley . localX - The output vector 8394a6e0b375SMatthew G. Knepley 839520f4b53cSBarry Smith Calling sequence of `funcs`: 8396a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8397a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8398a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8399a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8400a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8401a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8402a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8403a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8404a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8405a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8406a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8407a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8408a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8409a6e0b375SMatthew G. Knepley . t - The current time 8410a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8411a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8412a6e0b375SMatthew G. Knepley . constants - The value of each constant 8413a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8414a6e0b375SMatthew G. Knepley 841573ff1848SBarry Smith Level: intermediate 841673ff1848SBarry Smith 8417bb7acecfSBarry Smith Note: 8418bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8419bb7acecfSBarry Smith The input `DM`, attached to localU, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8420bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8421a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8422a6e0b375SMatthew G. Knepley 8423bb7acecfSBarry Smith Developer Notes: 8424bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8425bb7acecfSBarry Smith 8426bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8427bb7acecfSBarry Smith 84281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabel()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8429a6e0b375SMatthew G. Knepley @*/ 8430a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8431d71ae5a4SJacob Faibussowitsch { 84328c6c5593SMatthew G. Knepley PetscFunctionBegin; 84338c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8434064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8435064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8436fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX); 84373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 84388c6c5593SMatthew G. Knepley } 84398c6c5593SMatthew G. Knepley 84402716604bSToby Isaac /*@C 8441d29d7c6eSMatthew G. Knepley DMProjectFieldLabel - This projects the given function of the input fields into the function space provided, putting the coefficients in a global vector, calculating only over the portion of the domain specified by the label. 8442d29d7c6eSMatthew G. Knepley 844320f4b53cSBarry Smith Not Collective 8444d29d7c6eSMatthew G. Knepley 8445d29d7c6eSMatthew G. Knepley Input Parameters: 8446bb7acecfSBarry Smith + dm - The `DM` 8447d29d7c6eSMatthew G. Knepley . time - The time 8448bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8449d29d7c6eSMatthew G. Knepley . numIds - The number of label ids to use 8450d29d7c6eSMatthew G. Knepley . ids - The label ids to use for marking 8451bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 845220f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8453d29d7c6eSMatthew G. Knepley . U - The input field vector 8454d29d7c6eSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8455d29d7c6eSMatthew G. Knepley - mode - The insertion mode for values 8456d29d7c6eSMatthew G. Knepley 8457d29d7c6eSMatthew G. Knepley Output Parameter: 8458d29d7c6eSMatthew G. Knepley . X - The output vector 8459d29d7c6eSMatthew G. Knepley 846020f4b53cSBarry Smith Calling sequence of `funcs`: 8461d29d7c6eSMatthew G. Knepley + dim - The spatial dimension 8462d29d7c6eSMatthew G. Knepley . Nf - The number of input fields 8463d29d7c6eSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8464d29d7c6eSMatthew G. Knepley . uOff - The offset of each field in u[] 8465d29d7c6eSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8466d29d7c6eSMatthew G. Knepley . u - The field values at this point in space 8467d29d7c6eSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8468d29d7c6eSMatthew G. Knepley . u_x - The field derivatives at this point in space 8469d29d7c6eSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8470d29d7c6eSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8471d29d7c6eSMatthew G. Knepley . a - The auxiliary field values at this point in space 8472d29d7c6eSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8473d29d7c6eSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8474d29d7c6eSMatthew G. Knepley . t - The current time 8475d29d7c6eSMatthew G. Knepley . x - The coordinates of this point 8476d29d7c6eSMatthew G. Knepley . numConstants - The number of constants 8477d29d7c6eSMatthew G. Knepley . constants - The value of each constant 8478d29d7c6eSMatthew G. Knepley - f - The value of the function at this point in space 8479d29d7c6eSMatthew G. Knepley 848073ff1848SBarry Smith Level: intermediate 848173ff1848SBarry Smith 8482bb7acecfSBarry Smith Note: 8483bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8484bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8485bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8486d29d7c6eSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8487d29d7c6eSMatthew G. Knepley 8488bb7acecfSBarry Smith Developer Notes: 8489bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8490bb7acecfSBarry Smith 8491bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8492bb7acecfSBarry Smith 84931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8494d29d7c6eSMatthew G. Knepley @*/ 8495a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec U, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec X) 8496d71ae5a4SJacob Faibussowitsch { 8497d29d7c6eSMatthew G. Knepley DM dmIn; 8498d29d7c6eSMatthew G. Knepley Vec localU, localX; 8499d29d7c6eSMatthew G. Knepley 8500d29d7c6eSMatthew G. Knepley PetscFunctionBegin; 8501d29d7c6eSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8502d29d7c6eSMatthew G. Knepley PetscCall(VecGetDM(U, &dmIn)); 8503d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dmIn, &localU)); 8504d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &localX)); 8505f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 850672fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalBegin(dmIn, U, mode, localU)); 850772fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalEnd(dmIn, U, mode, localU)); 8508d29d7c6eSMatthew G. Knepley PetscCall(DMProjectFieldLabelLocal(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX)); 8509d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 8510d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 8511d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &localX)); 8512d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dmIn, &localU)); 85133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8514d29d7c6eSMatthew G. Knepley } 8515d29d7c6eSMatthew G. Knepley 8516d29d7c6eSMatthew G. Knepley /*@C 8517ece3a9fcSMatthew G. Knepley DMProjectBdFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain boundary specified by the label. 8518ece3a9fcSMatthew G. Knepley 851920f4b53cSBarry Smith Not Collective 8520ece3a9fcSMatthew G. Knepley 8521ece3a9fcSMatthew G. Knepley Input Parameters: 8522bb7acecfSBarry Smith + dm - The `DM` 8523ece3a9fcSMatthew G. Knepley . time - The time 8524bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain boundary to output 8525ece3a9fcSMatthew G. Knepley . numIds - The number of label ids to use 8526ece3a9fcSMatthew G. Knepley . ids - The label ids to use for marking 8527bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 852820f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8529ece3a9fcSMatthew G. Knepley . localU - The input field vector 8530ece3a9fcSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8531ece3a9fcSMatthew G. Knepley - mode - The insertion mode for values 8532ece3a9fcSMatthew G. Knepley 8533ece3a9fcSMatthew G. Knepley Output Parameter: 8534ece3a9fcSMatthew G. Knepley . localX - The output vector 8535ece3a9fcSMatthew G. Knepley 853620f4b53cSBarry Smith Calling sequence of `funcs`: 8537ece3a9fcSMatthew G. Knepley + dim - The spatial dimension 8538ece3a9fcSMatthew G. Knepley . Nf - The number of input fields 8539ece3a9fcSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8540ece3a9fcSMatthew G. Knepley . uOff - The offset of each field in u[] 8541ece3a9fcSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8542ece3a9fcSMatthew G. Knepley . u - The field values at this point in space 8543ece3a9fcSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8544ece3a9fcSMatthew G. Knepley . u_x - The field derivatives at this point in space 8545ece3a9fcSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8546ece3a9fcSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8547ece3a9fcSMatthew G. Knepley . a - The auxiliary field values at this point in space 8548ece3a9fcSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8549ece3a9fcSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8550ece3a9fcSMatthew G. Knepley . t - The current time 8551ece3a9fcSMatthew G. Knepley . x - The coordinates of this point 8552ece3a9fcSMatthew G. Knepley . n - The face normal 8553ece3a9fcSMatthew G. Knepley . numConstants - The number of constants 8554ece3a9fcSMatthew G. Knepley . constants - The value of each constant 8555ece3a9fcSMatthew G. Knepley - f - The value of the function at this point in space 8556ece3a9fcSMatthew G. Knepley 855773ff1848SBarry Smith Level: intermediate 855873ff1848SBarry Smith 8559ece3a9fcSMatthew G. Knepley Note: 8560bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8561bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8562bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8563ece3a9fcSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8564ece3a9fcSMatthew G. Knepley 8565bb7acecfSBarry Smith Developer Notes: 8566bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8567bb7acecfSBarry Smith 8568bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8569bb7acecfSBarry Smith 85701cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8571ece3a9fcSMatthew G. Knepley @*/ 8572a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectBdFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8573d71ae5a4SJacob Faibussowitsch { 8574ece3a9fcSMatthew G. Knepley PetscFunctionBegin; 8575ece3a9fcSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8576064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8577064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8578fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectbdfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX); 85793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8580ece3a9fcSMatthew G. Knepley } 8581ece3a9fcSMatthew G. Knepley 8582ece3a9fcSMatthew G. Knepley /*@C 85832716604bSToby Isaac DMComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 85842716604bSToby Isaac 858520f4b53cSBarry Smith Collective 8586bb7acecfSBarry Smith 85872716604bSToby Isaac Input Parameters: 8588bb7acecfSBarry Smith + dm - The `DM` 85890709b2feSToby Isaac . time - The time 85902716604bSToby Isaac . funcs - The functions to evaluate for each field component 85912716604bSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8592574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 85932716604bSToby Isaac 85942716604bSToby Isaac Output Parameter: 85952716604bSToby Isaac . diff - The diff ||u - u_h||_2 85962716604bSToby Isaac 85972716604bSToby Isaac Level: developer 85982716604bSToby Isaac 8599bb7acecfSBarry Smith Developer Notes: 8600bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8601bb7acecfSBarry Smith 8602bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8603bb7acecfSBarry Smith 86041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 86052716604bSToby Isaac @*/ 8606d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 8607d71ae5a4SJacob Faibussowitsch { 86082716604bSToby Isaac PetscFunctionBegin; 86092716604bSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8610b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8611fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2diff, time, funcs, ctxs, X, diff); 86123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 86132716604bSToby Isaac } 8614b698f381SToby Isaac 8615b698f381SToby Isaac /*@C 8616b698f381SToby Isaac DMComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h. 8617b698f381SToby Isaac 861820f4b53cSBarry Smith Collective 8619d083f849SBarry Smith 8620b698f381SToby Isaac Input Parameters: 8621bb7acecfSBarry Smith + dm - The `DM` 8622a4e35b19SJacob Faibussowitsch . time - The time 8623b698f381SToby Isaac . funcs - The gradient functions to evaluate for each field component 8624b698f381SToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8625574a98acSMatthew G. Knepley . X - The coefficient vector u_h, a global vector 8626b698f381SToby Isaac - n - The vector to project along 8627b698f381SToby Isaac 8628b698f381SToby Isaac Output Parameter: 8629b698f381SToby Isaac . diff - The diff ||(grad u - grad u_h) . n||_2 8630b698f381SToby Isaac 8631b698f381SToby Isaac Level: developer 8632b698f381SToby Isaac 8633bb7acecfSBarry Smith Developer Notes: 8634bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8635bb7acecfSBarry Smith 8636bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8637bb7acecfSBarry Smith 86381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMComputeL2FieldDiff()` 8639b698f381SToby Isaac @*/ 8640d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 8641d71ae5a4SJacob Faibussowitsch { 8642b698f381SToby Isaac PetscFunctionBegin; 8643b698f381SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8644b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8645fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2gradientdiff, time, funcs, ctxs, X, n, diff); 86463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8647b698f381SToby Isaac } 8648b698f381SToby Isaac 86492a16baeaSToby Isaac /*@C 86502a16baeaSToby Isaac DMComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components. 86512a16baeaSToby Isaac 865220f4b53cSBarry Smith Collective 8653d083f849SBarry Smith 86542a16baeaSToby Isaac Input Parameters: 8655bb7acecfSBarry Smith + dm - The `DM` 86562a16baeaSToby Isaac . time - The time 86572a16baeaSToby Isaac . funcs - The functions to evaluate for each field component 86582a16baeaSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8659574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 86602a16baeaSToby Isaac 86612a16baeaSToby Isaac Output Parameter: 86622a16baeaSToby Isaac . diff - The array of differences, ||u^f - u^f_h||_2 86632a16baeaSToby Isaac 86642a16baeaSToby Isaac Level: developer 86652a16baeaSToby Isaac 8666bb7acecfSBarry Smith Developer Notes: 8667bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8668bb7acecfSBarry Smith 8669bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8670bb7acecfSBarry Smith 867142747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2GradientDiff()` 86722a16baeaSToby Isaac @*/ 8673d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[]) 8674d71ae5a4SJacob Faibussowitsch { 86752a16baeaSToby Isaac PetscFunctionBegin; 86762a16baeaSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 86772a16baeaSToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8678fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2fielddiff, time, funcs, ctxs, X, diff); 86793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 86802a16baeaSToby Isaac } 86812a16baeaSToby Isaac 8682df0b854cSToby Isaac /*@C 8683bb7acecfSBarry Smith DMGetNeighbors - Gets an array containing the MPI ranks of all the processes neighbors 8684502a2867SDave May 8685502a2867SDave May Not Collective 8686502a2867SDave May 8687502a2867SDave May Input Parameter: 8688bb7acecfSBarry Smith . dm - The `DM` 8689502a2867SDave May 86900a19bb7dSprj- Output Parameters: 86910a19bb7dSprj- + nranks - the number of neighbours 86920a19bb7dSprj- - ranks - the neighbors ranks 8693502a2867SDave May 86949bdbcad8SBarry Smith Level: beginner 86959bdbcad8SBarry Smith 8696bb7acecfSBarry Smith Note: 8697bb7acecfSBarry Smith Do not free the array, it is freed when the `DM` is destroyed. 8698502a2867SDave May 86991cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDAGetNeighbors()`, `PetscSFGetRootRanks()` 8700502a2867SDave May @*/ 8701d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNeighbors(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[]) 8702d71ae5a4SJacob Faibussowitsch { 8703502a2867SDave May PetscFunctionBegin; 8704502a2867SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8705fa1e479aSStefano Zampini PetscUseTypeMethod(dm, getneighbors, nranks, ranks); 87063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8707502a2867SDave May } 8708502a2867SDave May 8709531c7667SBarry Smith #include <petsc/private/matimpl.h> /* Needed because of coloring->ctype below */ 8710531c7667SBarry Smith 8711531c7667SBarry Smith /* 8712531c7667SBarry Smith Converts the input vector to a ghosted vector and then calls the standard coloring code. 87132b6f951bSStefano Zampini This must be a different function because it requires DM which is not defined in the Mat library 8714531c7667SBarry Smith */ 871566976f2fSJacob Faibussowitsch static PetscErrorCode MatFDColoringApply_AIJDM(Mat J, MatFDColoring coloring, Vec x1, void *sctx) 8716d71ae5a4SJacob Faibussowitsch { 8717531c7667SBarry Smith PetscFunctionBegin; 8718531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8719531c7667SBarry Smith Vec x1local; 8720531c7667SBarry Smith DM dm; 87219566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 87227a8be351SBarry Smith PetscCheck(dm, PetscObjectComm((PetscObject)J), PETSC_ERR_ARG_INCOMP, "IS_COLORING_LOCAL requires a DM"); 87239566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &x1local)); 87249566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, x1, INSERT_VALUES, x1local)); 87259566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, x1, INSERT_VALUES, x1local)); 8726531c7667SBarry Smith x1 = x1local; 8727531c7667SBarry Smith } 87289566063dSJacob Faibussowitsch PetscCall(MatFDColoringApply_AIJ(J, coloring, x1, sctx)); 8729531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8730531c7667SBarry Smith DM dm; 87319566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 87329566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &x1)); 8733531c7667SBarry Smith } 87343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8735531c7667SBarry Smith } 8736531c7667SBarry Smith 8737531c7667SBarry Smith /*@ 8738bb7acecfSBarry Smith MatFDColoringUseDM - allows a `MatFDColoring` object to use the `DM` associated with the matrix to compute a `IS_COLORING_LOCAL` coloring 8739531c7667SBarry Smith 8740a4e35b19SJacob Faibussowitsch Input Parameters: 8741a4e35b19SJacob Faibussowitsch + coloring - The matrix to get the `DM` from 8742a4e35b19SJacob Faibussowitsch - fdcoloring - the `MatFDColoring` object 8743531c7667SBarry Smith 87449bdbcad8SBarry Smith Level: advanced 87459bdbcad8SBarry Smith 874673ff1848SBarry Smith Developer Note: 874773ff1848SBarry Smith This routine exists because the PETSc `Mat` library does not know about the `DM` objects 8748531c7667SBarry Smith 87491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatFDColoring`, `MatFDColoringCreate()`, `ISColoringType` 8750531c7667SBarry Smith @*/ 8751d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringUseDM(Mat coloring, MatFDColoring fdcoloring) 8752d71ae5a4SJacob Faibussowitsch { 8753531c7667SBarry Smith PetscFunctionBegin; 8754531c7667SBarry Smith coloring->ops->fdcoloringapply = MatFDColoringApply_AIJDM; 87553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8756531c7667SBarry Smith } 87578320bc6fSPatrick Sanan 87588320bc6fSPatrick Sanan /*@ 8759bb7acecfSBarry Smith DMGetCompatibility - determine if two `DM`s are compatible 87608320bc6fSPatrick Sanan 87618320bc6fSPatrick Sanan Collective 87628320bc6fSPatrick Sanan 87638320bc6fSPatrick Sanan Input Parameters: 8764bb7acecfSBarry Smith + dm1 - the first `DM` 8765bb7acecfSBarry Smith - dm2 - the second `DM` 87668320bc6fSPatrick Sanan 87678320bc6fSPatrick Sanan Output Parameters: 8768bb7acecfSBarry Smith + compatible - whether or not the two `DM`s are compatible 8769bb7acecfSBarry Smith - set - whether or not the compatible value was actually determined and set 87708320bc6fSPatrick Sanan 877120f4b53cSBarry Smith Level: advanced 877220f4b53cSBarry Smith 87738320bc6fSPatrick Sanan Notes: 8774bb7acecfSBarry Smith Two `DM`s are deemed compatible if they represent the same parallel decomposition 87753d862458SPatrick Sanan of the same topology. This implies that the section (field data) on one 87768320bc6fSPatrick Sanan "makes sense" with respect to the topology and parallel decomposition of the other. 8777bb7acecfSBarry Smith Loosely speaking, compatible `DM`s represent the same domain and parallel 87783d862458SPatrick Sanan decomposition, but hold different data. 87798320bc6fSPatrick Sanan 87808320bc6fSPatrick Sanan Typically, one would confirm compatibility if intending to simultaneously iterate 8781bb7acecfSBarry Smith over a pair of vectors obtained from different `DM`s. 87828320bc6fSPatrick Sanan 8783bb7acecfSBarry Smith For example, two `DMDA` objects are compatible if they have the same local 87848320bc6fSPatrick Sanan and global sizes and the same stencil width. They can have different numbers 87858320bc6fSPatrick Sanan of degrees of freedom per node. Thus, one could use the node numbering from 8786bb7acecfSBarry Smith either `DM` in bounds for a loop over vectors derived from either `DM`. 87878320bc6fSPatrick Sanan 8788bb7acecfSBarry Smith Consider the operation of summing data living on a 2-dof `DMDA` to data living 8789bb7acecfSBarry Smith on a 1-dof `DMDA`, which should be compatible, as in the following snippet. 87908320bc6fSPatrick Sanan .vb 87918320bc6fSPatrick Sanan ... 87929566063dSJacob Faibussowitsch PetscCall(DMGetCompatibility(da1,da2,&compatible,&set)); 87938320bc6fSPatrick Sanan if (set && compatible) { 87949566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da1,vec1,&arr1)); 87959566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da2,vec2,&arr2)); 87969566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da1,&x,&y,NULL,&m,&n,NULL)); 87978320bc6fSPatrick Sanan for (j=y; j<y+n; ++j) { 87988320bc6fSPatrick Sanan for (i=x; i<x+m, ++i) { 87998320bc6fSPatrick Sanan arr1[j][i][0] = arr2[j][i][0] + arr2[j][i][1]; 88008320bc6fSPatrick Sanan } 88018320bc6fSPatrick Sanan } 88029566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da1,vec1,&arr1)); 88039566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da2,vec2,&arr2)); 88048320bc6fSPatrick Sanan } else { 88058320bc6fSPatrick Sanan SETERRQ(PetscObjectComm((PetscObject)da1,PETSC_ERR_ARG_INCOMP,"DMDA objects incompatible"); 88068320bc6fSPatrick Sanan } 88078320bc6fSPatrick Sanan ... 88088320bc6fSPatrick Sanan .ve 88098320bc6fSPatrick Sanan 8810bb7acecfSBarry Smith Checking compatibility might be expensive for a given implementation of `DM`, 88118320bc6fSPatrick Sanan or might be impossible to unambiguously confirm or deny. For this reason, 88128320bc6fSPatrick Sanan this function may decline to determine compatibility, and hence users should 88138320bc6fSPatrick Sanan always check the "set" output parameter. 88148320bc6fSPatrick Sanan 8815bb7acecfSBarry Smith A `DM` is always compatible with itself. 88168320bc6fSPatrick Sanan 8817bb7acecfSBarry Smith In the current implementation, `DM`s which live on "unequal" communicators 88188320bc6fSPatrick Sanan (MPI_UNEQUAL in the terminology of MPI_Comm_compare()) are always deemed 88198320bc6fSPatrick Sanan incompatible. 88208320bc6fSPatrick Sanan 88218320bc6fSPatrick Sanan This function is labeled "Collective," as information about all subdomains 8822bb7acecfSBarry Smith is required on each rank. However, in `DM` implementations which store all this 88238320bc6fSPatrick Sanan information locally, this function may be merely "Logically Collective". 88248320bc6fSPatrick Sanan 882573ff1848SBarry Smith Developer Note: 8826bb7acecfSBarry Smith Compatibility is assumed to be a symmetric concept; `DM` A is compatible with `DM` B 88273d862458SPatrick Sanan iff B is compatible with A. Thus, this function checks the implementations 8828a5bc1bf3SBarry Smith of both dm and dmc (if they are of different types), attempting to determine 8829bb7acecfSBarry Smith compatibility. It is left to `DM` implementers to ensure that symmetry is 88308320bc6fSPatrick Sanan preserved. The simplest way to do this is, when implementing type-specific 88313d862458SPatrick Sanan logic for this function, is to check for existing logic in the implementation 8832bb7acecfSBarry Smith of other `DM` types and let *set = PETSC_FALSE if found. 88338320bc6fSPatrick Sanan 88341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreateCompatibleDMDA()`, `DMStagCreateCompatibleDMStag()` 88358320bc6fSPatrick Sanan @*/ 8836d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCompatibility(DM dm1, DM dm2, PetscBool *compatible, PetscBool *set) 8837d71ae5a4SJacob Faibussowitsch { 88388320bc6fSPatrick Sanan PetscMPIInt compareResult; 88398320bc6fSPatrick Sanan DMType type, type2; 88408320bc6fSPatrick Sanan PetscBool sameType; 88418320bc6fSPatrick Sanan 88428320bc6fSPatrick Sanan PetscFunctionBegin; 8843a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dm1, DM_CLASSID, 1); 88448320bc6fSPatrick Sanan PetscValidHeaderSpecific(dm2, DM_CLASSID, 2); 88458320bc6fSPatrick Sanan 88468320bc6fSPatrick Sanan /* Declare a DM compatible with itself */ 8847a5bc1bf3SBarry Smith if (dm1 == dm2) { 88488320bc6fSPatrick Sanan *set = PETSC_TRUE; 88498320bc6fSPatrick Sanan *compatible = PETSC_TRUE; 88503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 88518320bc6fSPatrick Sanan } 88528320bc6fSPatrick Sanan 88538320bc6fSPatrick Sanan /* Declare a DM incompatible with a DM that lives on an "unequal" 88548320bc6fSPatrick Sanan communicator. Note that this does not preclude compatibility with 88558320bc6fSPatrick Sanan DMs living on "congruent" or "similar" communicators, but this must be 88568320bc6fSPatrick Sanan determined by the implementation-specific logic */ 88579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)dm1), PetscObjectComm((PetscObject)dm2), &compareResult)); 88588320bc6fSPatrick Sanan if (compareResult == MPI_UNEQUAL) { 88598320bc6fSPatrick Sanan *set = PETSC_TRUE; 88608320bc6fSPatrick Sanan *compatible = PETSC_FALSE; 88613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 88628320bc6fSPatrick Sanan } 88638320bc6fSPatrick Sanan 88648320bc6fSPatrick Sanan /* Pass to the implementation-specific routine, if one exists. */ 8865a5bc1bf3SBarry Smith if (dm1->ops->getcompatibility) { 8866dbbe0bcdSBarry Smith PetscUseTypeMethod(dm1, getcompatibility, dm2, compatible, set); 88673ba16761SJacob Faibussowitsch if (*set) PetscFunctionReturn(PETSC_SUCCESS); 88688320bc6fSPatrick Sanan } 88698320bc6fSPatrick Sanan 8870a5bc1bf3SBarry Smith /* If dm1 and dm2 are of different types, then attempt to check compatibility 88718320bc6fSPatrick Sanan with an implementation of this function from dm2 */ 88729566063dSJacob Faibussowitsch PetscCall(DMGetType(dm1, &type)); 88739566063dSJacob Faibussowitsch PetscCall(DMGetType(dm2, &type2)); 88749566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(type, type2, &sameType)); 88758320bc6fSPatrick Sanan if (!sameType && dm2->ops->getcompatibility) { 8876dbbe0bcdSBarry Smith PetscUseTypeMethod(dm2, getcompatibility, dm1, compatible, set); /* Note argument order */ 88778320bc6fSPatrick Sanan } else { 88788320bc6fSPatrick Sanan *set = PETSC_FALSE; 88798320bc6fSPatrick Sanan } 88803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 88818320bc6fSPatrick Sanan } 8882c0f0dcc3SMatthew G. Knepley 8883c0f0dcc3SMatthew G. Knepley /*@C 8884bb7acecfSBarry Smith DMMonitorSet - Sets an additional monitor function that is to be used after a solve to monitor discretization performance. 8885c0f0dcc3SMatthew G. Knepley 888620f4b53cSBarry Smith Logically Collective 8887c0f0dcc3SMatthew G. Knepley 8888c0f0dcc3SMatthew G. Knepley Input Parameters: 888960225df5SJacob Faibussowitsch + dm - the `DM` 8890c0f0dcc3SMatthew G. Knepley . f - the monitor function 889120f4b53cSBarry Smith . mctx - [optional] user-defined context for private data for the monitor routine (use `NULL` if no context is desired) 889249abdd8aSBarry Smith - monitordestroy - [optional] routine that frees monitor context (may be `NULL`), see `PetscCtxDestroyFn` for the calling sequence 8893c0f0dcc3SMatthew G. Knepley 889420f4b53cSBarry Smith Options Database Key: 889560225df5SJacob Faibussowitsch . -dm_monitor_cancel - cancels all monitors that have been hardwired into a code by calls to `DMMonitorSet()`, but 8896c0f0dcc3SMatthew G. Knepley does not cancel those set via the options database. 8897c0f0dcc3SMatthew G. Knepley 88989bdbcad8SBarry Smith Level: intermediate 88999bdbcad8SBarry Smith 8900bb7acecfSBarry Smith Note: 8901c0f0dcc3SMatthew G. Knepley Several different monitoring routines may be set by calling 8902bb7acecfSBarry Smith `DMMonitorSet()` multiple times or with `DMMonitorSetFromOptions()`; all will be called in the 8903c0f0dcc3SMatthew G. Knepley order in which they were set. 8904c0f0dcc3SMatthew G. Knepley 890573ff1848SBarry Smith Fortran Note: 8906bb7acecfSBarry Smith Only a single monitor function can be set for each `DM` object 8907bb7acecfSBarry Smith 890873ff1848SBarry Smith Developer Note: 8909bb7acecfSBarry Smith This API has a generic name but seems specific to a very particular aspect of the use of `DM` 8910c0f0dcc3SMatthew G. Knepley 891149abdd8aSBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorCancel()`, `DMMonitorSetFromOptions()`, `DMMonitor()`, `PetscCtxDestroyFn` 8912c0f0dcc3SMatthew G. Knepley @*/ 891349abdd8aSBarry Smith PetscErrorCode DMMonitorSet(DM dm, PetscErrorCode (*f)(DM, void *), void *mctx, PetscCtxDestroyFn *monitordestroy) 8914d71ae5a4SJacob Faibussowitsch { 8915c0f0dcc3SMatthew G. Knepley PetscInt m; 8916c0f0dcc3SMatthew G. Knepley 8917c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8918c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8919c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 8920c0f0dcc3SMatthew G. Knepley PetscBool identical; 8921c0f0dcc3SMatthew G. Knepley 89229566063dSJacob Faibussowitsch PetscCall(PetscMonitorCompare((PetscErrorCode (*)(void))f, mctx, monitordestroy, (PetscErrorCode (*)(void))dm->monitor[m], dm->monitorcontext[m], dm->monitordestroy[m], &identical)); 89233ba16761SJacob Faibussowitsch if (identical) PetscFunctionReturn(PETSC_SUCCESS); 8924c0f0dcc3SMatthew G. Knepley } 89257a8be351SBarry Smith PetscCheck(dm->numbermonitors < MAXDMMONITORS, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many monitors set"); 8926c0f0dcc3SMatthew G. Knepley dm->monitor[dm->numbermonitors] = f; 8927c0f0dcc3SMatthew G. Knepley dm->monitordestroy[dm->numbermonitors] = monitordestroy; 8928835f2295SStefano Zampini dm->monitorcontext[dm->numbermonitors++] = mctx; 89293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8930c0f0dcc3SMatthew G. Knepley } 8931c0f0dcc3SMatthew G. Knepley 8932c0f0dcc3SMatthew G. Knepley /*@ 8933bb7acecfSBarry Smith DMMonitorCancel - Clears all the monitor functions for a `DM` object. 8934c0f0dcc3SMatthew G. Knepley 893520f4b53cSBarry Smith Logically Collective 8936c0f0dcc3SMatthew G. Knepley 8937c0f0dcc3SMatthew G. Knepley Input Parameter: 8938c0f0dcc3SMatthew G. Knepley . dm - the DM 8939c0f0dcc3SMatthew G. Knepley 8940c0f0dcc3SMatthew G. Knepley Options Database Key: 8941c0f0dcc3SMatthew G. Knepley . -dm_monitor_cancel - cancels all monitors that have been hardwired 8942bb7acecfSBarry Smith into a code by calls to `DMonitorSet()`, but does not cancel those 8943c0f0dcc3SMatthew G. Knepley set via the options database 8944c0f0dcc3SMatthew G. Knepley 89459bdbcad8SBarry Smith Level: intermediate 89469bdbcad8SBarry Smith 8947bb7acecfSBarry Smith Note: 8948bb7acecfSBarry Smith There is no way to clear one specific monitor from a `DM` object. 8949c0f0dcc3SMatthew G. Knepley 89501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`, `DMMonitor()` 8951c0f0dcc3SMatthew G. Knepley @*/ 8952d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorCancel(DM dm) 8953d71ae5a4SJacob Faibussowitsch { 8954c0f0dcc3SMatthew G. Knepley PetscInt m; 8955c0f0dcc3SMatthew G. Knepley 8956c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8957c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8958c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 89599566063dSJacob Faibussowitsch if (dm->monitordestroy[m]) PetscCall((*dm->monitordestroy[m])(&dm->monitorcontext[m])); 8960c0f0dcc3SMatthew G. Knepley } 8961c0f0dcc3SMatthew G. Knepley dm->numbermonitors = 0; 89623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8963c0f0dcc3SMatthew G. Knepley } 8964c0f0dcc3SMatthew G. Knepley 8965c0f0dcc3SMatthew G. Knepley /*@C 8966c0f0dcc3SMatthew G. Knepley DMMonitorSetFromOptions - Sets a monitor function and viewer appropriate for the type indicated by the user 8967c0f0dcc3SMatthew G. Knepley 896820f4b53cSBarry Smith Collective 8969c0f0dcc3SMatthew G. Knepley 8970c0f0dcc3SMatthew G. Knepley Input Parameters: 8971bb7acecfSBarry Smith + dm - `DM` object you wish to monitor 8972c0f0dcc3SMatthew G. Knepley . name - the monitor type one is seeking 8973c0f0dcc3SMatthew G. Knepley . help - message indicating what monitoring is done 8974c0f0dcc3SMatthew G. Knepley . manual - manual page for the monitor 897549abdd8aSBarry Smith . monitor - the monitor function, this must use a `PetscViewerFormat` as its context 8976bb7acecfSBarry Smith - monitorsetup - a function that is called once ONLY if the user selected this monitor that may set additional features of the `DM` or `PetscViewer` objects 8977c0f0dcc3SMatthew G. Knepley 8978c0f0dcc3SMatthew G. Knepley Output Parameter: 8979c0f0dcc3SMatthew G. Knepley . flg - Flag set if the monitor was created 8980c0f0dcc3SMatthew G. Knepley 8981c0f0dcc3SMatthew G. Knepley Level: developer 8982c0f0dcc3SMatthew G. Knepley 8983648c30bcSBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscOptionsCreateViewer()`, `PetscOptionsGetReal()`, `PetscOptionsHasName()`, `PetscOptionsGetString()`, 8984db781477SPatrick Sanan `PetscOptionsGetIntArray()`, `PetscOptionsGetRealArray()`, `PetscOptionsBool()` 898560225df5SJacob Faibussowitsch `PetscOptionsInt()`, `PetscOptionsString()`, `PetscOptionsReal()`, 8986db781477SPatrick Sanan `PetscOptionsName()`, `PetscOptionsBegin()`, `PetscOptionsEnd()`, `PetscOptionsHeadBegin()`, 8987c2e3fba1SPatrick Sanan `PetscOptionsStringArray()`, `PetscOptionsRealArray()`, `PetscOptionsScalar()`, 8988db781477SPatrick Sanan `PetscOptionsBoolGroupBegin()`, `PetscOptionsBoolGroup()`, `PetscOptionsBoolGroupEnd()`, 8989bb7acecfSBarry Smith `PetscOptionsFList()`, `PetscOptionsEList()`, `DMMonitor()`, `DMMonitorSet()` 8990c0f0dcc3SMatthew G. Knepley @*/ 8991d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSetFromOptions(DM dm, const char name[], const char help[], const char manual[], PetscErrorCode (*monitor)(DM, void *), PetscErrorCode (*monitorsetup)(DM, PetscViewerAndFormat *), PetscBool *flg) 8992d71ae5a4SJacob Faibussowitsch { 8993c0f0dcc3SMatthew G. Knepley PetscViewer viewer; 8994c0f0dcc3SMatthew G. Knepley PetscViewerFormat format; 8995c0f0dcc3SMatthew G. Knepley 8996c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8997c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8998648c30bcSBarry Smith PetscCall(PetscOptionsCreateViewer(PetscObjectComm((PetscObject)dm), ((PetscObject)dm)->options, ((PetscObject)dm)->prefix, name, &viewer, &format, flg)); 8999c0f0dcc3SMatthew G. Knepley if (*flg) { 9000c0f0dcc3SMatthew G. Knepley PetscViewerAndFormat *vf; 9001c0f0dcc3SMatthew G. Knepley 90029566063dSJacob Faibussowitsch PetscCall(PetscViewerAndFormatCreate(viewer, format, &vf)); 9003648c30bcSBarry Smith PetscCall(PetscViewerDestroy(&viewer)); 90049566063dSJacob Faibussowitsch if (monitorsetup) PetscCall((*monitorsetup)(dm, vf)); 9005835f2295SStefano Zampini PetscCall(DMMonitorSet(dm, monitor, vf, (PetscCtxDestroyFn *)PetscViewerAndFormatDestroy)); 9006c0f0dcc3SMatthew G. Knepley } 90073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9008c0f0dcc3SMatthew G. Knepley } 9009c0f0dcc3SMatthew G. Knepley 9010c0f0dcc3SMatthew G. Knepley /*@ 9011c0f0dcc3SMatthew G. Knepley DMMonitor - runs the user provided monitor routines, if they exist 9012c0f0dcc3SMatthew G. Knepley 901320f4b53cSBarry Smith Collective 9014c0f0dcc3SMatthew G. Knepley 90152fe279fdSBarry Smith Input Parameter: 9016bb7acecfSBarry Smith . dm - The `DM` 9017c0f0dcc3SMatthew G. Knepley 9018c0f0dcc3SMatthew G. Knepley Level: developer 9019c0f0dcc3SMatthew G. Knepley 902073ff1848SBarry Smith Developer Note: 9021a4e35b19SJacob Faibussowitsch Note should indicate when during the life of the `DM` the monitor is run. It appears to be 9022a4e35b19SJacob Faibussowitsch related to the discretization process seems rather specialized since some `DM` have no 9023a4e35b19SJacob Faibussowitsch concept of discretization. 9024bb7acecfSBarry Smith 90251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()` 9026c0f0dcc3SMatthew G. Knepley @*/ 9027d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitor(DM dm) 9028d71ae5a4SJacob Faibussowitsch { 9029c0f0dcc3SMatthew G. Knepley PetscInt m; 9030c0f0dcc3SMatthew G. Knepley 9031c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 90323ba16761SJacob Faibussowitsch if (!dm) PetscFunctionReturn(PETSC_SUCCESS); 9033c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 903448a46eb9SPierre Jolivet for (m = 0; m < dm->numbermonitors; ++m) PetscCall((*dm->monitor[m])(dm, dm->monitorcontext[m])); 90353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9036c0f0dcc3SMatthew G. Knepley } 90372e4af2aeSMatthew G. Knepley 90382e4af2aeSMatthew G. Knepley /*@ 9039bb7acecfSBarry Smith DMComputeError - Computes the error assuming the user has provided the exact solution functions 90402e4af2aeSMatthew G. Knepley 904120f4b53cSBarry Smith Collective 90422e4af2aeSMatthew G. Knepley 90432e4af2aeSMatthew G. Knepley Input Parameters: 9044bb7acecfSBarry Smith + dm - The `DM` 90456b867d5aSJose E. Roman - sol - The solution vector 90462e4af2aeSMatthew G. Knepley 90476b867d5aSJose E. Roman Input/Output Parameter: 904820f4b53cSBarry Smith . errors - An array of length Nf, the number of fields, or `NULL` for no output; on output 90496b867d5aSJose E. Roman contains the error in each field 90506b867d5aSJose E. Roman 90516b867d5aSJose E. Roman Output Parameter: 905220f4b53cSBarry Smith . errorVec - A vector to hold the cellwise error (may be `NULL`) 905320f4b53cSBarry Smith 905420f4b53cSBarry Smith Level: developer 90552e4af2aeSMatthew G. Knepley 9056bb7acecfSBarry Smith Note: 9057bb7acecfSBarry Smith The exact solutions come from the `PetscDS` object, and the time comes from `DMGetOutputSequenceNumber()`. 90582e4af2aeSMatthew G. Knepley 90591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMGetRegionNumDS()`, `PetscDSGetExactSolution()`, `DMGetOutputSequenceNumber()` 90602e4af2aeSMatthew G. Knepley @*/ 9061d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeError(DM dm, Vec sol, PetscReal errors[], Vec *errorVec) 9062d71ae5a4SJacob Faibussowitsch { 90632e4af2aeSMatthew G. Knepley PetscErrorCode (**exactSol)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *); 90642e4af2aeSMatthew G. Knepley void **ctxs; 90652e4af2aeSMatthew G. Knepley PetscReal time; 90662e4af2aeSMatthew G. Knepley PetscInt Nf, f, Nds, s; 90672e4af2aeSMatthew G. Knepley 90682e4af2aeSMatthew G. Knepley PetscFunctionBegin; 90699566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 90709566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &exactSol, Nf, &ctxs)); 90719566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 90722e4af2aeSMatthew G. Knepley for (s = 0; s < Nds; ++s) { 90732e4af2aeSMatthew G. Knepley PetscDS ds; 90742e4af2aeSMatthew G. Knepley DMLabel label; 90752e4af2aeSMatthew G. Knepley IS fieldIS; 90762e4af2aeSMatthew G. Knepley const PetscInt *fields; 90772e4af2aeSMatthew G. Knepley PetscInt dsNf; 90782e4af2aeSMatthew G. Knepley 907907218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 90809566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 90819566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISGetIndices(fieldIS, &fields)); 90822e4af2aeSMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 90832e4af2aeSMatthew G. Knepley const PetscInt field = fields[f]; 90849566063dSJacob Faibussowitsch PetscCall(PetscDSGetExactSolution(ds, field, &exactSol[field], &ctxs[field])); 90852e4af2aeSMatthew G. Knepley } 90869566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISRestoreIndices(fieldIS, &fields)); 90872e4af2aeSMatthew G. Knepley } 9088ad540459SPierre Jolivet for (f = 0; f < Nf; ++f) PetscCheck(exactSol[f], PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "DS must contain exact solution functions in order to calculate error, missing for field %" PetscInt_FMT, f); 90899566063dSJacob Faibussowitsch PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time)); 90909566063dSJacob Faibussowitsch if (errors) PetscCall(DMComputeL2FieldDiff(dm, time, exactSol, ctxs, sol, errors)); 90912e4af2aeSMatthew G. Knepley if (errorVec) { 90922e4af2aeSMatthew G. Knepley DM edm; 90932e4af2aeSMatthew G. Knepley DMPolytopeType ct; 90942e4af2aeSMatthew G. Knepley PetscBool simplex; 90952e4af2aeSMatthew G. Knepley PetscInt dim, cStart, Nf; 90962e4af2aeSMatthew G. Knepley 90979566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &edm)); 90989566063dSJacob Faibussowitsch PetscCall(DMGetDimension(edm, &dim)); 90999566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 91009566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 91012e4af2aeSMatthew G. Knepley simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE; 91029566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 91032e4af2aeSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 91042e4af2aeSMatthew G. Knepley PetscFE fe, efe; 91052e4af2aeSMatthew G. Knepley PetscQuadrature q; 91062e4af2aeSMatthew G. Knepley const char *name; 91072e4af2aeSMatthew G. Knepley 91089566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe)); 91099566063dSJacob Faibussowitsch PetscCall(PetscFECreateLagrange(PETSC_COMM_SELF, dim, Nf, simplex, 0, PETSC_DETERMINE, &efe)); 91109566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)fe, &name)); 91119566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)efe, name)); 91129566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 91139566063dSJacob Faibussowitsch PetscCall(PetscFESetQuadrature(efe, q)); 91149566063dSJacob Faibussowitsch PetscCall(DMSetField(edm, f, NULL, (PetscObject)efe)); 91159566063dSJacob Faibussowitsch PetscCall(PetscFEDestroy(&efe)); 91162e4af2aeSMatthew G. Knepley } 91179566063dSJacob Faibussowitsch PetscCall(DMCreateDS(edm)); 91182e4af2aeSMatthew G. Knepley 91199566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(edm, errorVec)); 91209566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*errorVec, "Error")); 91219566063dSJacob Faibussowitsch PetscCall(DMPlexComputeL2DiffVec(dm, time, exactSol, ctxs, sol, *errorVec)); 91229566063dSJacob Faibussowitsch PetscCall(DMDestroy(&edm)); 91232e4af2aeSMatthew G. Knepley } 91249566063dSJacob Faibussowitsch PetscCall(PetscFree2(exactSol, ctxs)); 91253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91262e4af2aeSMatthew G. Knepley } 91279a2a23afSMatthew G. Knepley 91289a2a23afSMatthew G. Knepley /*@ 9129bb7acecfSBarry Smith DMGetNumAuxiliaryVec - Get the number of auxiliary vectors associated with this `DM` 91309a2a23afSMatthew G. Knepley 913120f4b53cSBarry Smith Not Collective 91329a2a23afSMatthew G. Knepley 91339a2a23afSMatthew G. Knepley Input Parameter: 9134bb7acecfSBarry Smith . dm - The `DM` 91359a2a23afSMatthew G. Knepley 91369a2a23afSMatthew G. Knepley Output Parameter: 9137a5b23f4aSJose E. Roman . numAux - The number of auxiliary data vectors 91389a2a23afSMatthew G. Knepley 91399a2a23afSMatthew G. Knepley Level: advanced 91409a2a23afSMatthew G. Knepley 9141e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMGetAuxiliaryVec()` 91429a2a23afSMatthew G. Knepley @*/ 9143d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumAuxiliaryVec(DM dm, PetscInt *numAux) 9144d71ae5a4SJacob Faibussowitsch { 91459a2a23afSMatthew G. Knepley PetscFunctionBegin; 91469a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 91479566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetSize(dm->auxData, numAux)); 91483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91499a2a23afSMatthew G. Knepley } 91509a2a23afSMatthew G. Knepley 91519a2a23afSMatthew G. Knepley /*@ 9152ac17215fSMatthew G. Knepley DMGetAuxiliaryVec - Get the auxiliary vector for region specified by the given label and value, and equation part 91539a2a23afSMatthew G. Knepley 915420f4b53cSBarry Smith Not Collective 91559a2a23afSMatthew G. Knepley 91569a2a23afSMatthew G. Knepley Input Parameters: 9157bb7acecfSBarry Smith + dm - The `DM` 9158bb7acecfSBarry Smith . label - The `DMLabel` 9159ac17215fSMatthew G. Knepley . value - The label value indicating the region 9160ac17215fSMatthew G. Knepley - part - The equation part, or 0 if unused 91619a2a23afSMatthew G. Knepley 91629a2a23afSMatthew G. Knepley Output Parameter: 9163bb7acecfSBarry Smith . aux - The `Vec` holding auxiliary field data 91649a2a23afSMatthew G. Knepley 91659bdbcad8SBarry Smith Level: advanced 91669bdbcad8SBarry Smith 9167bb7acecfSBarry Smith Note: 9168bb7acecfSBarry Smith If no auxiliary vector is found for this (label, value), (NULL, 0, 0) is checked as well. 916904c51a94SMatthew G. Knepley 9170e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryLabels()` 91719a2a23afSMatthew G. Knepley @*/ 9172d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec *aux) 9173d71ae5a4SJacob Faibussowitsch { 9174ac17215fSMatthew G. Knepley PetscHashAuxKey key, wild = {NULL, 0, 0}; 917504c51a94SMatthew G. Knepley PetscBool has; 91769a2a23afSMatthew G. Knepley 91779a2a23afSMatthew G. Knepley PetscFunctionBegin; 91789a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 91799a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 91809a2a23afSMatthew G. Knepley key.label = label; 91819a2a23afSMatthew G. Knepley key.value = value; 9182ac17215fSMatthew G. Knepley key.part = part; 91839566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxHas(dm->auxData, key, &has)); 91849566063dSJacob Faibussowitsch if (has) PetscCall(PetscHMapAuxGet(dm->auxData, key, aux)); 91859566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxGet(dm->auxData, wild, aux)); 91863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91879a2a23afSMatthew G. Knepley } 91889a2a23afSMatthew G. Knepley 91899a2a23afSMatthew G. Knepley /*@ 9190bb7acecfSBarry Smith DMSetAuxiliaryVec - Set an auxiliary vector for region specified by the given label and value, and equation part 91919a2a23afSMatthew G. Knepley 919220f4b53cSBarry Smith Not Collective because auxiliary vectors are not parallel 91939a2a23afSMatthew G. Knepley 91949a2a23afSMatthew G. Knepley Input Parameters: 9195bb7acecfSBarry Smith + dm - The `DM` 9196bb7acecfSBarry Smith . label - The `DMLabel` 91979a2a23afSMatthew G. Knepley . value - The label value indicating the region 9198ac17215fSMatthew G. Knepley . part - The equation part, or 0 if unused 9199bb7acecfSBarry Smith - aux - The `Vec` holding auxiliary field data 92009a2a23afSMatthew G. Knepley 92019a2a23afSMatthew G. Knepley Level: advanced 92029a2a23afSMatthew G. Knepley 9203e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMCopyAuxiliaryVec()` 92049a2a23afSMatthew G. Knepley @*/ 9205d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec aux) 9206d71ae5a4SJacob Faibussowitsch { 92079a2a23afSMatthew G. Knepley Vec old; 92089a2a23afSMatthew G. Knepley PetscHashAuxKey key; 92099a2a23afSMatthew G. Knepley 92109a2a23afSMatthew G. Knepley PetscFunctionBegin; 92119a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 92129a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 92139a2a23afSMatthew G. Knepley key.label = label; 92149a2a23afSMatthew G. Knepley key.value = value; 9215ac17215fSMatthew G. Knepley key.part = part; 92169566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGet(dm->auxData, key, &old)); 92179566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)aux)); 92189566063dSJacob Faibussowitsch if (!aux) PetscCall(PetscHMapAuxDel(dm->auxData, key)); 92199566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxSet(dm->auxData, key, aux)); 9220d705d0eaSStefano Zampini PetscCall(VecDestroy(&old)); 92213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92229a2a23afSMatthew G. Knepley } 92239a2a23afSMatthew G. Knepley 9224cc4c1da9SBarry Smith /*@ 9225bb7acecfSBarry Smith DMGetAuxiliaryLabels - Get the labels, values, and parts for all auxiliary vectors in this `DM` 92269a2a23afSMatthew G. Knepley 922720f4b53cSBarry Smith Not Collective 92289a2a23afSMatthew G. Knepley 92299a2a23afSMatthew G. Knepley Input Parameter: 9230bb7acecfSBarry Smith . dm - The `DM` 92319a2a23afSMatthew G. Knepley 92329a2a23afSMatthew G. Knepley Output Parameters: 9233bb7acecfSBarry Smith + labels - The `DMLabel`s for each `Vec` 9234bb7acecfSBarry Smith . values - The label values for each `Vec` 9235bb7acecfSBarry Smith - parts - The equation parts for each `Vec` 92369a2a23afSMatthew G. Knepley 92379bdbcad8SBarry Smith Level: advanced 92389bdbcad8SBarry Smith 9239bb7acecfSBarry Smith Note: 9240bb7acecfSBarry Smith The arrays passed in must be at least as large as `DMGetNumAuxiliaryVec()`. 92419a2a23afSMatthew G. Knepley 9242e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMCopyAuxiliaryVec()` 92439a2a23afSMatthew G. Knepley @*/ 9244d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryLabels(DM dm, DMLabel labels[], PetscInt values[], PetscInt parts[]) 9245d71ae5a4SJacob Faibussowitsch { 92469a2a23afSMatthew G. Knepley PetscHashAuxKey *keys; 92479a2a23afSMatthew G. Knepley PetscInt n, i, off = 0; 92489a2a23afSMatthew G. Knepley 92499a2a23afSMatthew G. Knepley PetscFunctionBegin; 92509a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 92514f572ea9SToby Isaac PetscAssertPointer(labels, 2); 92524f572ea9SToby Isaac PetscAssertPointer(values, 3); 92534f572ea9SToby Isaac PetscAssertPointer(parts, 4); 92549566063dSJacob Faibussowitsch PetscCall(DMGetNumAuxiliaryVec(dm, &n)); 92559566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &keys)); 92569566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetKeys(dm->auxData, &off, keys)); 92579371c9d4SSatish Balay for (i = 0; i < n; ++i) { 92589371c9d4SSatish Balay labels[i] = keys[i].label; 92599371c9d4SSatish Balay values[i] = keys[i].value; 92609371c9d4SSatish Balay parts[i] = keys[i].part; 92619371c9d4SSatish Balay } 92629566063dSJacob Faibussowitsch PetscCall(PetscFree(keys)); 92633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92649a2a23afSMatthew G. Knepley } 92659a2a23afSMatthew G. Knepley 92669a2a23afSMatthew G. Knepley /*@ 9267bb7acecfSBarry Smith DMCopyAuxiliaryVec - Copy the auxiliary vector data on a `DM` to a new `DM` 92689a2a23afSMatthew G. Knepley 926920f4b53cSBarry Smith Not Collective 92709a2a23afSMatthew G. Knepley 92719a2a23afSMatthew G. Knepley Input Parameter: 9272bb7acecfSBarry Smith . dm - The `DM` 92739a2a23afSMatthew G. Knepley 92749a2a23afSMatthew G. Knepley Output Parameter: 9275bb7acecfSBarry Smith . dmNew - The new `DM`, now with the same auxiliary data 92769a2a23afSMatthew G. Knepley 92779a2a23afSMatthew G. Knepley Level: advanced 92789a2a23afSMatthew G. Knepley 9279bb7acecfSBarry Smith Note: 9280bb7acecfSBarry Smith This is a shallow copy of the auxiliary vectors 9281bb7acecfSBarry Smith 9282e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 92839a2a23afSMatthew G. Knepley @*/ 9284d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyAuxiliaryVec(DM dm, DM dmNew) 9285d71ae5a4SJacob Faibussowitsch { 92869a2a23afSMatthew G. Knepley PetscFunctionBegin; 92879a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9288d705d0eaSStefano Zampini PetscValidHeaderSpecific(dmNew, DM_CLASSID, 2); 9289d705d0eaSStefano Zampini if (dm == dmNew) PetscFunctionReturn(PETSC_SUCCESS); 9290e4d5475eSStefano Zampini PetscCall(DMClearAuxiliaryVec(dmNew)); 9291e4d5475eSStefano Zampini 9292e4d5475eSStefano Zampini PetscCall(PetscHMapAuxDestroy(&dmNew->auxData)); 92939566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDuplicate(dm->auxData, &dmNew->auxData)); 9294d705d0eaSStefano Zampini { 9295d705d0eaSStefano Zampini Vec *auxData; 9296d705d0eaSStefano Zampini PetscInt n, i, off = 0; 9297d705d0eaSStefano Zampini 9298d705d0eaSStefano Zampini PetscCall(PetscHMapAuxGetSize(dmNew->auxData, &n)); 9299d705d0eaSStefano Zampini PetscCall(PetscMalloc1(n, &auxData)); 9300d705d0eaSStefano Zampini PetscCall(PetscHMapAuxGetVals(dmNew->auxData, &off, auxData)); 9301d705d0eaSStefano Zampini for (i = 0; i < n; ++i) PetscCall(PetscObjectReference((PetscObject)auxData[i])); 9302d705d0eaSStefano Zampini PetscCall(PetscFree(auxData)); 9303e4d5475eSStefano Zampini } 9304e4d5475eSStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 9305e4d5475eSStefano Zampini } 9306e4d5475eSStefano Zampini 9307e4d5475eSStefano Zampini /*@ 9308e4d5475eSStefano Zampini DMClearAuxiliaryVec - Destroys the auxiliary vector information and creates a new empty one 9309e4d5475eSStefano Zampini 9310e4d5475eSStefano Zampini Not Collective 9311e4d5475eSStefano Zampini 9312e4d5475eSStefano Zampini Input Parameter: 9313e4d5475eSStefano Zampini . dm - The `DM` 9314e4d5475eSStefano Zampini 9315e4d5475eSStefano Zampini Level: advanced 9316e4d5475eSStefano Zampini 9317e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMCopyAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 9318e4d5475eSStefano Zampini @*/ 9319e4d5475eSStefano Zampini PetscErrorCode DMClearAuxiliaryVec(DM dm) 9320e4d5475eSStefano Zampini { 9321e4d5475eSStefano Zampini Vec *auxData; 9322e4d5475eSStefano Zampini PetscInt n, i, off = 0; 9323e4d5475eSStefano Zampini 9324e4d5475eSStefano Zampini PetscFunctionBegin; 9325e4d5475eSStefano Zampini PetscCall(PetscHMapAuxGetSize(dm->auxData, &n)); 9326d705d0eaSStefano Zampini PetscCall(PetscMalloc1(n, &auxData)); 9327e4d5475eSStefano Zampini PetscCall(PetscHMapAuxGetVals(dm->auxData, &off, auxData)); 9328d705d0eaSStefano Zampini for (i = 0; i < n; ++i) PetscCall(VecDestroy(&auxData[i])); 9329d705d0eaSStefano Zampini PetscCall(PetscFree(auxData)); 9330e4d5475eSStefano Zampini PetscCall(PetscHMapAuxDestroy(&dm->auxData)); 9331e4d5475eSStefano Zampini PetscCall(PetscHMapAuxCreate(&dm->auxData)); 93323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 93339a2a23afSMatthew G. Knepley } 9334b5a892a1SMatthew G. Knepley 9335cc4c1da9SBarry Smith /*@ 9336bb7acecfSBarry Smith DMPolytopeMatchOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9337b5a892a1SMatthew G. Knepley 933820f4b53cSBarry Smith Not Collective 9339b5a892a1SMatthew G. Knepley 9340b5a892a1SMatthew G. Knepley Input Parameters: 9341bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9342b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9343b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9344b5a892a1SMatthew G. Knepley 9345b5a892a1SMatthew G. Knepley Output Parameters: 9346bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9347b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9348b5a892a1SMatthew G. Knepley 9349b5a892a1SMatthew G. Knepley Level: advanced 9350b5a892a1SMatthew G. Knepley 9351bb7acecfSBarry Smith Note: 9352bb7acecfSBarry Smith An arrangement is a face order combined with an orientation for each face 9353bb7acecfSBarry Smith 935485036b15SMatthew G. Knepley Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2 9355bb7acecfSBarry Smith that labels each arrangement (face ordering plus orientation for each face). 9356bb7acecfSBarry Smith 9357bb7acecfSBarry Smith See `DMPolytopeMatchVertexOrientation()` to find a new vertex orientation that takes the source vertex arrangement to the target vertex arrangement 9358bb7acecfSBarry Smith 93591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetVertexOrientation()` 9360b5a892a1SMatthew G. Knepley @*/ 9361d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt, PetscBool *found) 9362d71ae5a4SJacob Faibussowitsch { 9363b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetConeSize(ct); 936485036b15SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2; 9365b5a892a1SMatthew G. Knepley PetscInt o, c; 9366b5a892a1SMatthew G. Knepley 9367b5a892a1SMatthew G. Knepley PetscFunctionBegin; 93689371c9d4SSatish Balay if (!nO) { 93699371c9d4SSatish Balay *ornt = 0; 93709371c9d4SSatish Balay *found = PETSC_TRUE; 93713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 93729371c9d4SSatish Balay } 9373b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 937485036b15SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangement(ct, o); 9375b5a892a1SMatthew G. Knepley 93769371c9d4SSatish Balay for (c = 0; c < cS; ++c) 93779371c9d4SSatish Balay if (sourceCone[arr[c * 2]] != targetCone[c]) break; 93789371c9d4SSatish Balay if (c == cS) { 93799371c9d4SSatish Balay *ornt = o; 93809371c9d4SSatish Balay break; 93819371c9d4SSatish Balay } 9382b5a892a1SMatthew G. Knepley } 9383b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 93843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9385b5a892a1SMatthew G. Knepley } 9386b5a892a1SMatthew G. Knepley 9387cc4c1da9SBarry Smith /*@ 9388bb7acecfSBarry Smith DMPolytopeGetOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9389b5a892a1SMatthew G. Knepley 939020f4b53cSBarry Smith Not Collective 9391b5a892a1SMatthew G. Knepley 9392b5a892a1SMatthew G. Knepley Input Parameters: 9393bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9394b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9395b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9396b5a892a1SMatthew G. Knepley 93972fe279fdSBarry Smith Output Parameter: 9398bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9399b5a892a1SMatthew G. Knepley 9400b5a892a1SMatthew G. Knepley Level: advanced 9401b5a892a1SMatthew G. Knepley 9402bb7acecfSBarry Smith Note: 9403bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchOrientation()` except it will generate an error if no suitable orientation can be found. 9404bb7acecfSBarry Smith 940573ff1848SBarry Smith Developer Note: 9406bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchOrientation()` and error if none is found 9407bb7acecfSBarry Smith 94081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchOrientation()`, `DMPolytopeGetVertexOrientation()`, `DMPolytopeMatchVertexOrientation()` 9409b5a892a1SMatthew G. Knepley @*/ 9410d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9411d71ae5a4SJacob Faibussowitsch { 9412b5a892a1SMatthew G. Knepley PetscBool found; 9413b5a892a1SMatthew G. Knepley 9414b5a892a1SMatthew G. Knepley PetscFunctionBegin; 94159566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchOrientation(ct, sourceCone, targetCone, ornt, &found)); 94167a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 94173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9418b5a892a1SMatthew G. Knepley } 9419b5a892a1SMatthew G. Knepley 9420cc4c1da9SBarry Smith /*@ 9421bb7acecfSBarry Smith DMPolytopeMatchVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9422b5a892a1SMatthew G. Knepley 942320f4b53cSBarry Smith Not Collective 9424b5a892a1SMatthew G. Knepley 9425b5a892a1SMatthew G. Knepley Input Parameters: 9426bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9427b5a892a1SMatthew G. Knepley . sourceVert - The source arrangement of vertices 9428b5a892a1SMatthew G. Knepley - targetVert - The target arrangement of vertices 9429b5a892a1SMatthew G. Knepley 9430b5a892a1SMatthew G. Knepley Output Parameters: 9431bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9432b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9433b5a892a1SMatthew G. Knepley 9434b5a892a1SMatthew G. Knepley Level: advanced 9435b5a892a1SMatthew G. Knepley 943673ff1848SBarry Smith Notes: 9437bb7acecfSBarry Smith An arrangement is a vertex order 9438bb7acecfSBarry Smith 943985036b15SMatthew G. Knepley Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2 9440bb7acecfSBarry Smith that labels each arrangement (vertex ordering). 9441bb7acecfSBarry Smith 9442bb7acecfSBarry Smith See `DMPolytopeMatchOrientation()` to find a new face orientation that takes the source face arrangement to the target face arrangement 9443bb7acecfSBarry Smith 944485036b15SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchOrientation()`, `DMPolytopeTypeGetNumVertices()`, `DMPolytopeTypeGetVertexArrangement()` 9445b5a892a1SMatthew G. Knepley @*/ 9446d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchVertexOrientation(DMPolytopeType ct, const PetscInt sourceVert[], const PetscInt targetVert[], PetscInt *ornt, PetscBool *found) 9447d71ae5a4SJacob Faibussowitsch { 9448b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetNumVertices(ct); 944985036b15SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2; 9450b5a892a1SMatthew G. Knepley PetscInt o, c; 9451b5a892a1SMatthew G. Knepley 9452b5a892a1SMatthew G. Knepley PetscFunctionBegin; 94539371c9d4SSatish Balay if (!nO) { 94549371c9d4SSatish Balay *ornt = 0; 94559371c9d4SSatish Balay *found = PETSC_TRUE; 94563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 94579371c9d4SSatish Balay } 9458b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 945985036b15SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetVertexArrangement(ct, o); 9460b5a892a1SMatthew G. Knepley 94619371c9d4SSatish Balay for (c = 0; c < cS; ++c) 94629371c9d4SSatish Balay if (sourceVert[arr[c]] != targetVert[c]) break; 94639371c9d4SSatish Balay if (c == cS) { 94649371c9d4SSatish Balay *ornt = o; 94659371c9d4SSatish Balay break; 94669371c9d4SSatish Balay } 9467b5a892a1SMatthew G. Knepley } 9468b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 94693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9470b5a892a1SMatthew G. Knepley } 9471b5a892a1SMatthew G. Knepley 9472cc4c1da9SBarry Smith /*@ 9473bb7acecfSBarry Smith DMPolytopeGetVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9474b5a892a1SMatthew G. Knepley 947520f4b53cSBarry Smith Not Collective 9476b5a892a1SMatthew G. Knepley 9477b5a892a1SMatthew G. Knepley Input Parameters: 9478bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9479b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of vertices 9480b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of vertices 9481b5a892a1SMatthew G. Knepley 94822fe279fdSBarry Smith Output Parameter: 9483bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9484b5a892a1SMatthew G. Knepley 9485b5a892a1SMatthew G. Knepley Level: advanced 9486b5a892a1SMatthew G. Knepley 9487bb7acecfSBarry Smith Note: 9488bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchVertexOrientation()` except it errors if not orientation is possible. 9489bb7acecfSBarry Smith 949073ff1848SBarry Smith Developer Note: 9491bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchVertexOrientation()` and error if none is found 9492bb7acecfSBarry Smith 94931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetOrientation()` 9494b5a892a1SMatthew G. Knepley @*/ 9495d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetVertexOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9496d71ae5a4SJacob Faibussowitsch { 9497b5a892a1SMatthew G. Knepley PetscBool found; 9498b5a892a1SMatthew G. Knepley 9499b5a892a1SMatthew G. Knepley PetscFunctionBegin; 95009566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchVertexOrientation(ct, sourceCone, targetCone, ornt, &found)); 95017a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 95023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9503b5a892a1SMatthew G. Knepley } 9504012bc364SMatthew G. Knepley 9505cc4c1da9SBarry Smith /*@ 9506012bc364SMatthew G. Knepley DMPolytopeInCellTest - Check whether a point lies inside the reference cell of given type 9507012bc364SMatthew G. Knepley 950820f4b53cSBarry Smith Not Collective 9509012bc364SMatthew G. Knepley 9510012bc364SMatthew G. Knepley Input Parameters: 9511bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9512012bc364SMatthew G. Knepley - point - Coordinates of the point 9513012bc364SMatthew G. Knepley 95142fe279fdSBarry Smith Output Parameter: 9515012bc364SMatthew G. Knepley . inside - Flag indicating whether the point is inside the reference cell of given type 9516012bc364SMatthew G. Knepley 9517012bc364SMatthew G. Knepley Level: advanced 9518012bc364SMatthew G. Knepley 95191cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMLocatePoints()` 9520012bc364SMatthew G. Knepley @*/ 9521d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeInCellTest(DMPolytopeType ct, const PetscReal point[], PetscBool *inside) 9522d71ae5a4SJacob Faibussowitsch { 9523012bc364SMatthew G. Knepley PetscReal sum = 0.0; 9524012bc364SMatthew G. Knepley PetscInt d; 9525012bc364SMatthew G. Knepley 9526012bc364SMatthew G. Knepley PetscFunctionBegin; 9527012bc364SMatthew G. Knepley *inside = PETSC_TRUE; 9528012bc364SMatthew G. Knepley switch (ct) { 9529012bc364SMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 9530012bc364SMatthew G. Knepley case DM_POLYTOPE_TETRAHEDRON: 9531012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) { 95329371c9d4SSatish Balay if (point[d] < -1.0) { 95339371c9d4SSatish Balay *inside = PETSC_FALSE; 95349371c9d4SSatish Balay break; 95359371c9d4SSatish Balay } 9536012bc364SMatthew G. Knepley sum += point[d]; 9537012bc364SMatthew G. Knepley } 95389371c9d4SSatish Balay if (sum > PETSC_SMALL) { 95399371c9d4SSatish Balay *inside = PETSC_FALSE; 95409371c9d4SSatish Balay break; 95419371c9d4SSatish Balay } 9542012bc364SMatthew G. Knepley break; 9543012bc364SMatthew G. Knepley case DM_POLYTOPE_QUADRILATERAL: 9544012bc364SMatthew G. Knepley case DM_POLYTOPE_HEXAHEDRON: 9545012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) 95469371c9d4SSatish Balay if (PetscAbsReal(point[d]) > 1. + PETSC_SMALL) { 95479371c9d4SSatish Balay *inside = PETSC_FALSE; 9548012bc364SMatthew G. Knepley break; 95499371c9d4SSatish Balay } 95509371c9d4SSatish Balay break; 9551d71ae5a4SJacob Faibussowitsch default: 9552d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported polytope type %s", DMPolytopeTypes[ct]); 9553012bc364SMatthew G. Knepley } 95543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9555012bc364SMatthew G. Knepley } 9556adc21957SMatthew G. Knepley 9557adc21957SMatthew G. Knepley /*@ 9558adc21957SMatthew G. Knepley DMReorderSectionSetDefault - Set flag indicating whether the local section should be reordered by default 9559adc21957SMatthew G. Knepley 9560adc21957SMatthew G. Knepley Logically collective 9561adc21957SMatthew G. Knepley 9562adc21957SMatthew G. Knepley Input Parameters: 9563adc21957SMatthew G. Knepley + dm - The DM 9564adc21957SMatthew G. Knepley - reorder - Flag for reordering 9565adc21957SMatthew G. Knepley 9566adc21957SMatthew G. Knepley Level: intermediate 9567adc21957SMatthew G. Knepley 9568adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetDefault()` 9569adc21957SMatthew G. Knepley @*/ 9570adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetDefault(DM dm, DMReorderDefaultFlag reorder) 9571adc21957SMatthew G. Knepley { 9572adc21957SMatthew G. Knepley PetscFunctionBegin; 9573adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9574adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionSetDefault_C", (DM, DMReorderDefaultFlag), (dm, reorder)); 9575adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9576adc21957SMatthew G. Knepley } 9577adc21957SMatthew G. Knepley 9578adc21957SMatthew G. Knepley /*@ 9579adc21957SMatthew G. Knepley DMReorderSectionGetDefault - Get flag indicating whether the local section should be reordered by default 9580adc21957SMatthew G. Knepley 9581adc21957SMatthew G. Knepley Not collective 9582adc21957SMatthew G. Knepley 9583adc21957SMatthew G. Knepley Input Parameter: 9584adc21957SMatthew G. Knepley . dm - The DM 9585adc21957SMatthew G. Knepley 9586adc21957SMatthew G. Knepley Output Parameter: 9587adc21957SMatthew G. Knepley . reorder - Flag for reordering 9588adc21957SMatthew G. Knepley 9589adc21957SMatthew G. Knepley Level: intermediate 9590adc21957SMatthew G. Knepley 9591adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()` 9592adc21957SMatthew G. Knepley @*/ 9593adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetDefault(DM dm, DMReorderDefaultFlag *reorder) 9594adc21957SMatthew G. Knepley { 9595adc21957SMatthew G. Knepley PetscFunctionBegin; 9596adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9597adc21957SMatthew G. Knepley PetscAssertPointer(reorder, 2); 9598adc21957SMatthew G. Knepley *reorder = DM_REORDER_DEFAULT_NOTSET; 9599adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionGetDefault_C", (DM, DMReorderDefaultFlag *), (dm, reorder)); 9600adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9601adc21957SMatthew G. Knepley } 9602adc21957SMatthew G. Knepley 9603cc4c1da9SBarry Smith /*@ 9604adc21957SMatthew G. Knepley DMReorderSectionSetType - Set the type of local section reordering 9605adc21957SMatthew G. Knepley 9606adc21957SMatthew G. Knepley Logically collective 9607adc21957SMatthew G. Knepley 9608adc21957SMatthew G. Knepley Input Parameters: 9609adc21957SMatthew G. Knepley + dm - The DM 9610adc21957SMatthew G. Knepley - reorder - The reordering method 9611adc21957SMatthew G. Knepley 9612adc21957SMatthew G. Knepley Level: intermediate 9613adc21957SMatthew G. Knepley 9614adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetType()`, `DMReorderSectionSetDefault()` 9615adc21957SMatthew G. Knepley @*/ 9616adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetType(DM dm, MatOrderingType reorder) 9617adc21957SMatthew G. Knepley { 9618adc21957SMatthew G. Knepley PetscFunctionBegin; 9619adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9620adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionSetType_C", (DM, MatOrderingType), (dm, reorder)); 9621adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9622adc21957SMatthew G. Knepley } 9623adc21957SMatthew G. Knepley 9624cc4c1da9SBarry Smith /*@ 9625adc21957SMatthew G. Knepley DMReorderSectionGetType - Get the reordering type for the local section 9626adc21957SMatthew G. Knepley 9627adc21957SMatthew G. Knepley Not collective 9628adc21957SMatthew G. Knepley 9629adc21957SMatthew G. Knepley Input Parameter: 9630adc21957SMatthew G. Knepley . dm - The DM 9631adc21957SMatthew G. Knepley 9632adc21957SMatthew G. Knepley Output Parameter: 9633adc21957SMatthew G. Knepley . reorder - The reordering method 9634adc21957SMatthew G. Knepley 9635adc21957SMatthew G. Knepley Level: intermediate 9636adc21957SMatthew G. Knepley 9637adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()`, `DMReorderSectionGetDefault()` 9638adc21957SMatthew G. Knepley @*/ 9639adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetType(DM dm, MatOrderingType *reorder) 9640adc21957SMatthew G. Knepley { 9641adc21957SMatthew G. Knepley PetscFunctionBegin; 9642adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9643adc21957SMatthew G. Knepley PetscAssertPointer(reorder, 2); 9644adc21957SMatthew G. Knepley *reorder = NULL; 9645adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionGetType_C", (DM, MatOrderingType *), (dm, reorder)); 9646adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9647adc21957SMatthew G. Knepley } 9648