1d0295fc0SJunchao Zhang #include <petscvec.h> 2af0996ceSBarry Smith #include <petsc/private/dmimpl.h> /*I "petscdm.h" I*/ 3c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 4e6f8dbb6SToby Isaac #include <petsc/private/petscdsimpl.h> /*I "petscds.h" I*/ 53e922f36SToby Isaac #include <petscdmplex.h> 6d2b2dc1eSMatthew G. Knepley #include <petscdmceed.h> 7f19dbd58SToby Isaac #include <petscdmfield.h> 80c312b8eSJed Brown #include <petscsf.h> 92764a2aaSMatthew G. Knepley #include <petscds.h> 1047c6ae99SBarry Smith 11f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 12f918ec44SMatthew G. Knepley #include <petscfeceed.h> 13f918ec44SMatthew G. Knepley #endif 14f918ec44SMatthew G. Knepley 15732e2eb9SMatthew G Knepley PetscClassId DM_CLASSID; 16d67d17b1SMatthew G. Knepley PetscClassId DMLABEL_CLASSID; 1742d0c57aSJames Wright PetscLogEvent DM_Convert, DM_GlobalToLocal, DM_LocalToGlobal, DM_LocalToLocal, DM_LocatePoints, DM_Coarsen, DM_Refine, DM_CreateInterpolation, DM_CreateRestriction, DM_CreateInjection, DM_CreateMatrix, DM_CreateMassMatrix, DM_Load, DM_View, DM_AdaptInterpolator, DM_ProjectFunction; 1867a56275SMatthew G Knepley 19ea78f98cSLisandro Dalcin const char *const DMBoundaryTypes[] = {"NONE", "GHOSTED", "MIRROR", "PERIODIC", "TWIST", "DMBoundaryType", "DM_BOUNDARY_", NULL}; 20d1b3049bSMatthew G. Knepley const char *const DMBoundaryConditionTypes[] = {"INVALID", "ESSENTIAL", "NATURAL", "INVALID", "INVALID", "ESSENTIAL_FIELD", "NATURAL_FIELD", "INVALID", "INVALID", "ESSENTIAL_BD_FIELD", "NATURAL_RIEMANN", "DMBoundaryConditionType", "DM_BC_", NULL}; 210e762ea3SJed Brown const char *const DMBlockingTypes[] = {"TOPOLOGICAL_POINT", "FIELD_NODE", "DMBlockingType", "DM_BLOCKING_", NULL}; 22476787b7SMatthew G. Knepley const char *const DMPolytopeTypes[] = 23476787b7SMatthew G. Knepley {"vertex", "segment", "tensor_segment", "triangle", "quadrilateral", "tensor_quad", "tetrahedron", "hexahedron", "triangular_prism", "tensor_triangular_prism", "tensor_quadrilateral_prism", "pyramid", "FV_ghost_cell", "interior_ghost_cell", 24476787b7SMatthew G. Knepley "unknown", "unknown_cell", "unknown_face", "invalid", "DMPolytopeType", "DM_POLYTOPE_", NULL}; 252cbb9b06SVaclav Hapla const char *const DMCopyLabelsModes[] = {"replace", "keep", "fail", "DMCopyLabelsMode", "DM_COPY_LABELS_", NULL}; 2660c22052SBarry Smith 27a4121054SBarry Smith /*@ 28bb7acecfSBarry Smith DMCreate - Creates an empty `DM` object. `DM`s are the abstract objects in PETSc that mediate between meshes and discretizations and the 290b4b7b1cSBarry Smith algebraic solvers, time integrators, and optimization algorithms in PETSc. 30a4121054SBarry Smith 31d083f849SBarry Smith Collective 32a4121054SBarry Smith 33a4121054SBarry Smith Input Parameter: 34bb7acecfSBarry Smith . comm - The communicator for the `DM` object 35a4121054SBarry Smith 36a4121054SBarry Smith Output Parameter: 37bb7acecfSBarry Smith . dm - The `DM` object 38a4121054SBarry Smith 39a4121054SBarry Smith Level: beginner 40a4121054SBarry Smith 41bb7acecfSBarry Smith Notes: 42bb7acecfSBarry Smith See `DMType` for a brief summary of available `DM`. 43bb7acecfSBarry Smith 44bb7acecfSBarry Smith The type must then be set with `DMSetType()`. If you never call `DMSetType()` it will generate an 450b4b7b1cSBarry Smith error when you try to use the `dm`. 460b4b7b1cSBarry Smith 470b4b7b1cSBarry Smith `DM` is an orphan initialism or orphan acronym, the letters have no meaning and never did. 48bb7acecfSBarry Smith 491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMType`, `DMDACreate()`, `DMDA`, `DMSLICED`, `DMCOMPOSITE`, `DMPLEX`, `DMMOAB`, `DMNETWORK` 50a4121054SBarry Smith @*/ 51d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreate(MPI_Comm comm, DM *dm) 52d71ae5a4SJacob Faibussowitsch { 53a4121054SBarry Smith DM v; 54e5e52638SMatthew G. Knepley PetscDS ds; 55a4121054SBarry Smith 56a4121054SBarry Smith PetscFunctionBegin; 574f572ea9SToby Isaac PetscAssertPointer(dm, 2); 58377f809aSBarry Smith 599566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 609566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(v, DM_CLASSID, "DM", "Distribution Manager", "DM", comm, DMDestroy, DMView)); 6162e5d2d2SJDBetteridge ((PetscObject)v)->non_cyclic_references = &DMCountNonCyclicReferences; 6249be4549SMatthew G. Knepley v->setupcalled = PETSC_FALSE; 6349be4549SMatthew G. Knepley v->setfromoptionscalled = PETSC_FALSE; 640298fd71SBarry Smith v->ltogmap = NULL; 65a4ea9b21SRichard Tran Mills v->bind_below = 0; 661411c6eeSJed Brown v->bs = 1; 67171400e9SBarry Smith v->coloringtype = IS_COLORING_GLOBAL; 689566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sf)); 699566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sectionSF)); 70c58f1c22SToby Isaac v->labels = NULL; 7134aa8a36SMatthew G. Knepley v->adjacency[0] = PETSC_FALSE; 7234aa8a36SMatthew G. Knepley v->adjacency[1] = PETSC_TRUE; 73c58f1c22SToby Isaac v->depthLabel = NULL; 74ba2698f1SMatthew G. Knepley v->celltypeLabel = NULL; 751bb6d2a8SBarry Smith v->localSection = NULL; 761bb6d2a8SBarry Smith v->globalSection = NULL; 773b8ba7d1SJed Brown v->defaultConstraint.section = NULL; 783b8ba7d1SJed Brown v->defaultConstraint.mat = NULL; 7979769bd5SJed Brown v->defaultConstraint.bias = NULL; 806858538eSMatthew G. Knepley v->coordinates[0].dim = PETSC_DEFAULT; 816858538eSMatthew G. Knepley v->coordinates[1].dim = PETSC_DEFAULT; 826858538eSMatthew G. Knepley v->sparseLocalize = PETSC_TRUE; 8396173672SStefano Zampini v->dim = PETSC_DETERMINE; 84435a35e8SMatthew G Knepley { 85435a35e8SMatthew G Knepley PetscInt i; 86435a35e8SMatthew G Knepley for (i = 0; i < 10; ++i) { 870298fd71SBarry Smith v->nullspaceConstructors[i] = NULL; 88f9d4088aSMatthew G. Knepley v->nearnullspaceConstructors[i] = NULL; 89435a35e8SMatthew G Knepley } 90435a35e8SMatthew G Knepley } 919566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 9207218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(v, NULL, NULL, ds, NULL)); 939566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 949566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxCreate(&v->auxData)); 9514f150ffSMatthew G. Knepley v->dmBC = NULL; 96a8fb8f29SToby Isaac v->coarseMesh = NULL; 97f4d763aaSMatthew G. Knepley v->outputSequenceNum = -1; 98cdb7a50dSMatthew G. Knepley v->outputSequenceVal = 0.0; 999566063dSJacob Faibussowitsch PetscCall(DMSetVecType(v, VECSTANDARD)); 1009566063dSJacob Faibussowitsch PetscCall(DMSetMatType(v, MATAIJ)); 1014a7a4c06SLawrence Mitchell 1021411c6eeSJed Brown *dm = v; 1033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 104a4121054SBarry Smith } 105a4121054SBarry Smith 10638221697SMatthew G. Knepley /*@ 107bb7acecfSBarry Smith DMClone - Creates a `DM` object with the same topology as the original. 10838221697SMatthew G. Knepley 109d083f849SBarry Smith Collective 11038221697SMatthew G. Knepley 11138221697SMatthew G. Knepley Input Parameter: 112bb7acecfSBarry Smith . dm - The original `DM` object 11338221697SMatthew G. Knepley 11438221697SMatthew G. Knepley Output Parameter: 115bb7acecfSBarry Smith . newdm - The new `DM` object 11638221697SMatthew G. Knepley 11738221697SMatthew G. Knepley Level: beginner 11838221697SMatthew G. Knepley 1191cb8cacdSPatrick Sanan Notes: 120bb7acecfSBarry Smith For some `DM` implementations this is a shallow clone, the result of which may share (reference counted) information with its parent. For example, 121bb7acecfSBarry Smith `DMClone()` applied to a `DMPLEX` object will result in a new `DMPLEX` that shares the topology with the original `DMPLEX`. It does not 122bb7acecfSBarry Smith share the `PetscSection` of the original `DM`. 1231bb6d2a8SBarry Smith 124bb7acecfSBarry Smith The clone is considered set up if the original has been set up. 12589706ed2SPatrick Sanan 126bb7acecfSBarry Smith Use `DMConvert()` for a general way to create new `DM` from a given `DM` 127bb7acecfSBarry Smith 12860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMSetType()`, `DMSetLocalSection()`, `DMSetGlobalSection()`, `DMPLEX`, `DMConvert()` 12938221697SMatthew G. Knepley @*/ 130d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClone(DM dm, DM *newdm) 131d71ae5a4SJacob Faibussowitsch { 13238221697SMatthew G. Knepley PetscSF sf; 13338221697SMatthew G. Knepley Vec coords; 13438221697SMatthew G. Knepley void *ctx; 135ec196627SMatthew G. Knepley MatOrderingType otype; 136ec196627SMatthew G. Knepley DMReorderDefaultFlag flg; 1376858538eSMatthew G. Knepley PetscInt dim, cdim, i; 13838221697SMatthew G. Knepley 13938221697SMatthew G. Knepley PetscFunctionBegin; 14038221697SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1414f572ea9SToby Isaac PetscAssertPointer(newdm, 2); 1429566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), newdm)); 1439566063dSJacob Faibussowitsch PetscCall(DMCopyLabels(dm, *newdm, PETSC_COPY_VALUES, PETSC_TRUE, DM_COPY_LABELS_FAIL)); 144ddf8437dSMatthew G. Knepley (*newdm)->leveldown = dm->leveldown; 145ddf8437dSMatthew G. Knepley (*newdm)->levelup = dm->levelup; 146c8a6034eSMark (*newdm)->prealloc_only = dm->prealloc_only; 147fc214432SJed Brown (*newdm)->prealloc_skip = dm->prealloc_skip; 1489566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->vectype)); 1499566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*newdm)->vectype)); 1509566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->mattype)); 1519566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*newdm)->mattype)); 1529566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 1539566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*newdm, dim)); 154dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, clone, newdm); 1553f22bcbcSToby Isaac (*newdm)->setupcalled = dm->setupcalled; 1569566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 1579566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*newdm, sf)); 1589566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dm, &ctx)); 1599566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(*newdm, ctx)); 160ec196627SMatthew G. Knepley PetscCall(DMReorderSectionGetDefault(dm, &flg)); 161ec196627SMatthew G. Knepley PetscCall(DMReorderSectionSetDefault(*newdm, flg)); 162ec196627SMatthew G. Knepley PetscCall(DMReorderSectionGetType(dm, &otype)); 163ec196627SMatthew G. Knepley PetscCall(DMReorderSectionSetType(*newdm, otype)); 1646858538eSMatthew G. Knepley for (i = 0; i < 2; ++i) { 1656858538eSMatthew G. Knepley if (dm->coordinates[i].dm) { 166be4c1c3eSMatthew G. Knepley DM ncdm; 167be4c1c3eSMatthew G. Knepley PetscSection cs; 1685a0206caSToby Isaac PetscInt pEnd = -1, pEndMax = -1; 169be4c1c3eSMatthew G. Knepley 1706858538eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm->coordinates[i].dm, &cs)); 1719566063dSJacob Faibussowitsch if (cs) PetscCall(PetscSectionGetChart(cs, NULL, &pEnd)); 172462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&pEnd, &pEndMax, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 1735a0206caSToby Isaac if (pEndMax >= 0) { 1746858538eSMatthew G. Knepley PetscCall(DMClone(dm->coordinates[i].dm, &ncdm)); 1756858538eSMatthew G. Knepley PetscCall(DMCopyDisc(dm->coordinates[i].dm, ncdm)); 1769566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(ncdm, cs)); 1775e50ca95SJames Wright if (dm->coordinates[i].dm->periodic.setup) { 1785e50ca95SJames Wright ncdm->periodic.setup = dm->coordinates[i].dm->periodic.setup; 1795e50ca95SJames Wright PetscCall(ncdm->periodic.setup(ncdm)); 1805e50ca95SJames Wright } 1816858538eSMatthew G. Knepley if (i) PetscCall(DMSetCellCoordinateDM(*newdm, ncdm)); 1826858538eSMatthew G. Knepley else PetscCall(DMSetCoordinateDM(*newdm, ncdm)); 1839566063dSJacob Faibussowitsch PetscCall(DMDestroy(&ncdm)); 184be4c1c3eSMatthew G. Knepley } 185be4c1c3eSMatthew G. Knepley } 1866858538eSMatthew G. Knepley } 1879566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 1889566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*newdm, cdim)); 1899566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coords)); 19038221697SMatthew G. Knepley if (coords) { 1919566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(*newdm, coords)); 19238221697SMatthew G. Knepley } else { 1939566063dSJacob Faibussowitsch PetscCall(DMGetCoordinates(dm, &coords)); 1949566063dSJacob Faibussowitsch if (coords) PetscCall(DMSetCoordinates(*newdm, coords)); 19538221697SMatthew G. Knepley } 1966858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinatesLocal(dm, &coords)); 1976858538eSMatthew G. Knepley if (coords) { 1986858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinatesLocal(*newdm, coords)); 1996858538eSMatthew G. Knepley } else { 2006858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinates(dm, &coords)); 2016858538eSMatthew G. Knepley if (coords) PetscCall(DMSetCellCoordinates(*newdm, coords)); 2026858538eSMatthew G. Knepley } 20390b157c4SStefano Zampini { 2044fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 2056858538eSMatthew G. Knepley 2064fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 2074fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*newdm, maxCell, Lstart, L)); 208c6b900c6SMatthew G. Knepley } 20934aa8a36SMatthew G. Knepley { 21034aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 21134aa8a36SMatthew G. Knepley 2129566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, &useCone, &useClosure)); 2139566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(*newdm, PETSC_DEFAULT, useCone, useClosure)); 21434aa8a36SMatthew G. Knepley } 2153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21638221697SMatthew G. Knepley } 21738221697SMatthew G. Knepley 2185d83a8b1SBarry Smith /*@ 2195d83a8b1SBarry Smith DMSetVecType - Sets the type of vector to be created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 2209a42bb27SBarry Smith 22120f4b53cSBarry Smith Logically Collective 2229a42bb27SBarry Smith 223147403d9SBarry Smith Input Parameters: 22432546409SMatthew G. Knepley + dm - initial distributed array 225bb7acecfSBarry Smith - ctype - the vector type, for example `VECSTANDARD`, `VECCUDA`, or `VECVIENNACL` 2269a42bb27SBarry Smith 22720f4b53cSBarry Smith Options Database Key: 228147403d9SBarry Smith . -dm_vec_type ctype - the type of vector to create 2299a42bb27SBarry Smith 2309a42bb27SBarry Smith Level: intermediate 2319a42bb27SBarry Smith 23260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMGetVecType()`, `DMSetMatType()`, `DMGetMatType()`, 233bb7acecfSBarry Smith `VECSTANDARD`, `VECCUDA`, `VECVIENNACL`, `DMCreateLocalVector()`, `DMCreateGlobalVector()` 2349a42bb27SBarry Smith @*/ 23532546409SMatthew G. Knepley PetscErrorCode DMSetVecType(DM dm, VecType ctype) 236d71ae5a4SJacob Faibussowitsch { 23732546409SMatthew G. Knepley char *tmp; 23832546409SMatthew G. Knepley 2399a42bb27SBarry Smith PetscFunctionBegin; 24032546409SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 24132546409SMatthew G. Knepley PetscAssertPointer(ctype, 2); 24232546409SMatthew G. Knepley tmp = (char *)dm->vectype; 24332546409SMatthew G. Knepley PetscCall(PetscStrallocpy(ctype, (char **)&dm->vectype)); 24432546409SMatthew G. Knepley PetscCall(PetscFree(tmp)); 2453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2469a42bb27SBarry Smith } 2479a42bb27SBarry Smith 2485d83a8b1SBarry Smith /*@ 249bb7acecfSBarry Smith DMGetVecType - Gets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 250c0dedaeaSBarry Smith 25120f4b53cSBarry Smith Logically Collective 252c0dedaeaSBarry Smith 253c0dedaeaSBarry Smith Input Parameter: 254c0dedaeaSBarry Smith . da - initial distributed array 255c0dedaeaSBarry Smith 256c0dedaeaSBarry Smith Output Parameter: 257c0dedaeaSBarry Smith . ctype - the vector type 258c0dedaeaSBarry Smith 259c0dedaeaSBarry Smith Level: intermediate 260c0dedaeaSBarry Smith 26160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMSetMatType()`, `DMGetMatType()`, `DMSetVecType()` 262c0dedaeaSBarry Smith @*/ 263d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetVecType(DM da, VecType *ctype) 264d71ae5a4SJacob Faibussowitsch { 265c0dedaeaSBarry Smith PetscFunctionBegin; 266c0dedaeaSBarry Smith PetscValidHeaderSpecific(da, DM_CLASSID, 1); 267c0dedaeaSBarry Smith *ctype = da->vectype; 2683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 269c0dedaeaSBarry Smith } 270c0dedaeaSBarry Smith 2715f1ad066SMatthew G Knepley /*@ 272bb7acecfSBarry Smith VecGetDM - Gets the `DM` defining the data layout of the vector 2735f1ad066SMatthew G Knepley 27420f4b53cSBarry Smith Not Collective 2755f1ad066SMatthew G Knepley 2765f1ad066SMatthew G Knepley Input Parameter: 277bb7acecfSBarry Smith . v - The `Vec` 2785f1ad066SMatthew G Knepley 2795f1ad066SMatthew G Knepley Output Parameter: 280bb7acecfSBarry Smith . dm - The `DM` 2815f1ad066SMatthew G Knepley 2825f1ad066SMatthew G Knepley Level: intermediate 2835f1ad066SMatthew G Knepley 284bb7acecfSBarry Smith Note: 285bb7acecfSBarry Smith A `Vec` may not have a `DM` associated with it. 286bb7acecfSBarry Smith 2871cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecSetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 2885f1ad066SMatthew G Knepley @*/ 289d71ae5a4SJacob Faibussowitsch PetscErrorCode VecGetDM(Vec v, DM *dm) 290d71ae5a4SJacob Faibussowitsch { 2915f1ad066SMatthew G Knepley PetscFunctionBegin; 2925f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 2934f572ea9SToby Isaac PetscAssertPointer(dm, 2); 2949566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)v, "__PETSc_dm", (PetscObject *)dm)); 2953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2965f1ad066SMatthew G Knepley } 2975f1ad066SMatthew G Knepley 2985f1ad066SMatthew G Knepley /*@ 299bb7acecfSBarry Smith VecSetDM - Sets the `DM` defining the data layout of the vector. 3005f1ad066SMatthew G Knepley 30120f4b53cSBarry Smith Not Collective 3025f1ad066SMatthew G Knepley 3035f1ad066SMatthew G Knepley Input Parameters: 304bb7acecfSBarry Smith + v - The `Vec` 305bb7acecfSBarry Smith - dm - The `DM` 3065f1ad066SMatthew G Knepley 30720f4b53cSBarry Smith Level: developer 30820f4b53cSBarry Smith 30973ff1848SBarry Smith Notes: 310bb7acecfSBarry Smith This is rarely used, generally one uses `DMGetLocalVector()` or `DMGetGlobalVector()` to create a vector associated with a given `DM` 311d9805387SMatthew G. Knepley 312bb7acecfSBarry Smith This is NOT the same as `DMCreateGlobalVector()` since it does not change the view methods or perform other customization, but merely sets the `DM` member. 313bb7acecfSBarry Smith 3141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecGetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 3155f1ad066SMatthew G Knepley @*/ 316d71ae5a4SJacob Faibussowitsch PetscErrorCode VecSetDM(Vec v, DM dm) 317d71ae5a4SJacob Faibussowitsch { 3185f1ad066SMatthew G Knepley PetscFunctionBegin; 3195f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 320d7f50e27SLisandro Dalcin if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 3219566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)v, "__PETSc_dm", (PetscObject)dm)); 3223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3235f1ad066SMatthew G Knepley } 3245f1ad066SMatthew G Knepley 325cc4c1da9SBarry Smith /*@ 326bb7acecfSBarry Smith DMSetISColoringType - Sets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 3278f1509bcSBarry Smith 32820f4b53cSBarry Smith Logically Collective 3298f1509bcSBarry Smith 3308f1509bcSBarry Smith Input Parameters: 331bb7acecfSBarry Smith + dm - the `DM` context 3328f1509bcSBarry Smith - ctype - the matrix type 3338f1509bcSBarry Smith 33420f4b53cSBarry Smith Options Database Key: 3358f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3368f1509bcSBarry Smith 3378f1509bcSBarry Smith Level: intermediate 3388f1509bcSBarry Smith 3391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 340bb7acecfSBarry Smith `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3418f1509bcSBarry Smith @*/ 342d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetISColoringType(DM dm, ISColoringType ctype) 343d71ae5a4SJacob Faibussowitsch { 3448f1509bcSBarry Smith PetscFunctionBegin; 3458f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3468f1509bcSBarry Smith dm->coloringtype = ctype; 3473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3488f1509bcSBarry Smith } 3498f1509bcSBarry Smith 350cc4c1da9SBarry Smith /*@ 351bb7acecfSBarry Smith DMGetISColoringType - Gets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 352521d9a4cSLisandro Dalcin 35320f4b53cSBarry Smith Logically Collective 354521d9a4cSLisandro Dalcin 355521d9a4cSLisandro Dalcin Input Parameter: 356bb7acecfSBarry Smith . dm - the `DM` context 3578f1509bcSBarry Smith 3588f1509bcSBarry Smith Output Parameter: 3598f1509bcSBarry Smith . ctype - the matrix type 3608f1509bcSBarry Smith 36120f4b53cSBarry Smith Options Database Key: 3628f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3638f1509bcSBarry Smith 3648f1509bcSBarry Smith Level: intermediate 3658f1509bcSBarry Smith 3661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 36742747ad1SJacob Faibussowitsch `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3688f1509bcSBarry Smith @*/ 369d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetISColoringType(DM dm, ISColoringType *ctype) 370d71ae5a4SJacob Faibussowitsch { 3718f1509bcSBarry Smith PetscFunctionBegin; 3728f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3738f1509bcSBarry Smith *ctype = dm->coloringtype; 3743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3758f1509bcSBarry Smith } 3768f1509bcSBarry Smith 377cc4c1da9SBarry Smith /*@ 378bb7acecfSBarry Smith DMSetMatType - Sets the type of matrix created with `DMCreateMatrix()` 3798f1509bcSBarry Smith 38020f4b53cSBarry Smith Logically Collective 3818f1509bcSBarry Smith 3828f1509bcSBarry Smith Input Parameters: 383bb7acecfSBarry Smith + dm - the `DM` context 384bb7acecfSBarry Smith - ctype - the matrix type, for example `MATMPIAIJ` 385521d9a4cSLisandro Dalcin 38620f4b53cSBarry Smith Options Database Key: 387bb7acecfSBarry Smith . -dm_mat_type ctype - the type of the matrix to create, for example mpiaij 388521d9a4cSLisandro Dalcin 389521d9a4cSLisandro Dalcin Level: intermediate 390521d9a4cSLisandro Dalcin 39142747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatType`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMGetMatType()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()` 392521d9a4cSLisandro Dalcin @*/ 393d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatType(DM dm, MatType ctype) 394d71ae5a4SJacob Faibussowitsch { 39532546409SMatthew G. Knepley char *tmp; 39632546409SMatthew G. Knepley 397521d9a4cSLisandro Dalcin PetscFunctionBegin; 398521d9a4cSLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39932546409SMatthew G. Knepley PetscAssertPointer(ctype, 2); 40032546409SMatthew G. Knepley tmp = (char *)dm->mattype; 4019566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(ctype, (char **)&dm->mattype)); 40232546409SMatthew G. Knepley PetscCall(PetscFree(tmp)); 4033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 404521d9a4cSLisandro Dalcin } 405521d9a4cSLisandro Dalcin 406cc4c1da9SBarry Smith /*@ 40720f4b53cSBarry Smith DMGetMatType - Gets the type of matrix that would be created with `DMCreateMatrix()` 408c0dedaeaSBarry Smith 40920f4b53cSBarry Smith Logically Collective 410c0dedaeaSBarry Smith 411c0dedaeaSBarry Smith Input Parameter: 412bb7acecfSBarry Smith . dm - the `DM` context 413c0dedaeaSBarry Smith 414c0dedaeaSBarry Smith Output Parameter: 415c0dedaeaSBarry Smith . ctype - the matrix type 416c0dedaeaSBarry Smith 417c0dedaeaSBarry Smith Level: intermediate 418c0dedaeaSBarry Smith 41942747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMSetMatType()` 420c0dedaeaSBarry Smith @*/ 421d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetMatType(DM dm, MatType *ctype) 422d71ae5a4SJacob Faibussowitsch { 423c0dedaeaSBarry Smith PetscFunctionBegin; 424c0dedaeaSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 425c0dedaeaSBarry Smith *ctype = dm->mattype; 4263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 427c0dedaeaSBarry Smith } 428c0dedaeaSBarry Smith 429c688c046SMatthew G Knepley /*@ 430bb7acecfSBarry Smith MatGetDM - Gets the `DM` defining the data layout of the matrix 431c688c046SMatthew G Knepley 43220f4b53cSBarry Smith Not Collective 433c688c046SMatthew G Knepley 434c688c046SMatthew G Knepley Input Parameter: 435bb7acecfSBarry Smith . A - The `Mat` 436c688c046SMatthew G Knepley 437c688c046SMatthew G Knepley Output Parameter: 438bb7acecfSBarry Smith . dm - The `DM` 439c688c046SMatthew G Knepley 440c688c046SMatthew G Knepley Level: intermediate 441c688c046SMatthew G Knepley 442bb7acecfSBarry Smith Note: 443bb7acecfSBarry Smith A matrix may not have a `DM` associated with it 444bb7acecfSBarry Smith 44573ff1848SBarry Smith Developer Note: 446bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with the `Mat` through a `PetscObjectCompose()` operation 4478f1509bcSBarry Smith 4481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatSetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 449c688c046SMatthew G Knepley @*/ 450d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDM(Mat A, DM *dm) 451d71ae5a4SJacob Faibussowitsch { 452c688c046SMatthew G Knepley PetscFunctionBegin; 453c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4544f572ea9SToby Isaac PetscAssertPointer(dm, 2); 4559566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_dm", (PetscObject *)dm)); 4563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 457c688c046SMatthew G Knepley } 458c688c046SMatthew G Knepley 459c688c046SMatthew G Knepley /*@ 460bb7acecfSBarry Smith MatSetDM - Sets the `DM` defining the data layout of the matrix 461c688c046SMatthew G Knepley 46220f4b53cSBarry Smith Not Collective 463c688c046SMatthew G Knepley 464c688c046SMatthew G Knepley Input Parameters: 46520f4b53cSBarry Smith + A - The `Mat` 46620f4b53cSBarry Smith - dm - The `DM` 467c688c046SMatthew G Knepley 468bb7acecfSBarry Smith Level: developer 469c688c046SMatthew G Knepley 470bb7acecfSBarry Smith Note: 471bb7acecfSBarry Smith This is rarely used in practice, rather `DMCreateMatrix()` is used to create a matrix associated with a particular `DM` 472bb7acecfSBarry Smith 47373ff1848SBarry Smith Developer Note: 474bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with 475bb7acecfSBarry Smith the `Mat` through a `PetscObjectCompose()` operation 4768f1509bcSBarry Smith 4771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatGetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 478c688c046SMatthew G Knepley @*/ 479d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetDM(Mat A, DM dm) 480d71ae5a4SJacob Faibussowitsch { 481c688c046SMatthew G Knepley PetscFunctionBegin; 482c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4838865f1eaSKarl Rupp if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 4849566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_dm", (PetscObject)dm)); 4853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 486c688c046SMatthew G Knepley } 487c688c046SMatthew G Knepley 488cc4c1da9SBarry Smith /*@ 489bb7acecfSBarry Smith DMSetOptionsPrefix - Sets the prefix prepended to all option names when searching through the options database 4909a42bb27SBarry Smith 49120f4b53cSBarry Smith Logically Collective 4929a42bb27SBarry Smith 493d8d19677SJose E. Roman Input Parameters: 49460225df5SJacob Faibussowitsch + dm - the `DM` context 495bb7acecfSBarry Smith - prefix - the prefix to prepend 4969a42bb27SBarry Smith 49720f4b53cSBarry Smith Level: advanced 49820f4b53cSBarry Smith 49920f4b53cSBarry Smith Note: 5009a42bb27SBarry Smith A hyphen (-) must NOT be given at the beginning of the prefix name. 5019a42bb27SBarry Smith The first character of all runtime options is AUTOMATICALLY the hyphen. 5029a42bb27SBarry Smith 5031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscObjectSetOptionsPrefix()`, `DMSetFromOptions()` 5049a42bb27SBarry Smith @*/ 505d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOptionsPrefix(DM dm, const char prefix[]) 506d71ae5a4SJacob Faibussowitsch { 5079a42bb27SBarry Smith PetscFunctionBegin; 5089a42bb27SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5099566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, prefix)); 5101baa6e33SBarry Smith if (dm->sf) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sf, prefix)); 5111baa6e33SBarry Smith if (dm->sectionSF) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sectionSF, prefix)); 5123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5139a42bb27SBarry Smith } 5149a42bb27SBarry Smith 515cc4c1da9SBarry Smith /*@ 516da81f932SPierre Jolivet DMAppendOptionsPrefix - Appends an additional string to an already existing prefix used for searching for 517bb7acecfSBarry Smith `DM` options in the options database. 51831697293SDave May 51920f4b53cSBarry Smith Logically Collective 52031697293SDave May 52131697293SDave May Input Parameters: 522bb7acecfSBarry Smith + dm - the `DM` context 523bb7acecfSBarry Smith - prefix - the string to append to the current prefix 52431697293SDave May 52520f4b53cSBarry Smith Level: advanced 52620f4b53cSBarry Smith 52720f4b53cSBarry Smith Note: 528bb7acecfSBarry Smith If the `DM` does not currently have an options prefix then this value is used alone as the prefix as if `DMSetOptionsPrefix()` had been called. 52931697293SDave May A hyphen (-) must NOT be given at the beginning of the prefix name. 53031697293SDave May The first character of all runtime options is AUTOMATICALLY the hyphen. 53131697293SDave May 5321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMGetOptionsPrefix()`, `PetscObjectAppendOptionsPrefix()`, `DMSetFromOptions()` 53331697293SDave May @*/ 534d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAppendOptionsPrefix(DM dm, const char prefix[]) 535d71ae5a4SJacob Faibussowitsch { 53631697293SDave May PetscFunctionBegin; 53731697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5389566063dSJacob Faibussowitsch PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, prefix)); 5393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 54031697293SDave May } 54131697293SDave May 542cc4c1da9SBarry Smith /*@ 54331697293SDave May DMGetOptionsPrefix - Gets the prefix used for searching for all 544bb7acecfSBarry Smith DM options in the options database. 54531697293SDave May 54631697293SDave May Not Collective 54731697293SDave May 5482fe279fdSBarry Smith Input Parameter: 549bb7acecfSBarry Smith . dm - the `DM` context 55031697293SDave May 5512fe279fdSBarry Smith Output Parameter: 55231697293SDave May . prefix - pointer to the prefix string used is returned 55331697293SDave May 55431697293SDave May Level: advanced 55531697293SDave May 55673ff1848SBarry Smith Fortran Note: 55720f4b53cSBarry Smith Pass in a string 'prefix' of 55820f4b53cSBarry Smith sufficient length to hold the prefix. 55920f4b53cSBarry Smith 5601cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMAppendOptionsPrefix()`, `DMSetFromOptions()` 56131697293SDave May @*/ 562d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOptionsPrefix(DM dm, const char *prefix[]) 563d71ae5a4SJacob Faibussowitsch { 56431697293SDave May PetscFunctionBegin; 56531697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5669566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, prefix)); 5673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56831697293SDave May } 56931697293SDave May 57062e5d2d2SJDBetteridge static PetscErrorCode DMCountNonCyclicReferences_Internal(DM dm, PetscBool recurseCoarse, PetscBool recurseFine, PetscInt *ncrefct) 571d71ae5a4SJacob Faibussowitsch { 5726eb26441SStefano Zampini PetscInt refct = ((PetscObject)dm)->refct; 57388bdff64SToby Isaac 57488bdff64SToby Isaac PetscFunctionBegin; 575aab5bcd8SJed Brown *ncrefct = 0; 57688bdff64SToby Isaac if (dm->coarseMesh && dm->coarseMesh->fineMesh == dm) { 57788bdff64SToby Isaac refct--; 57888bdff64SToby Isaac if (recurseCoarse) { 57988bdff64SToby Isaac PetscInt coarseCount; 58088bdff64SToby Isaac 58162e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->coarseMesh, PETSC_TRUE, PETSC_FALSE, &coarseCount)); 58288bdff64SToby Isaac refct += coarseCount; 58388bdff64SToby Isaac } 58488bdff64SToby Isaac } 58588bdff64SToby Isaac if (dm->fineMesh && dm->fineMesh->coarseMesh == dm) { 58688bdff64SToby Isaac refct--; 58788bdff64SToby Isaac if (recurseFine) { 58888bdff64SToby Isaac PetscInt fineCount; 58988bdff64SToby Isaac 59062e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->fineMesh, PETSC_FALSE, PETSC_TRUE, &fineCount)); 59188bdff64SToby Isaac refct += fineCount; 59288bdff64SToby Isaac } 59388bdff64SToby Isaac } 59488bdff64SToby Isaac *ncrefct = refct; 5953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 59688bdff64SToby Isaac } 59788bdff64SToby Isaac 59862e5d2d2SJDBetteridge /* Generic wrapper for DMCountNonCyclicReferences_Internal() */ 59962e5d2d2SJDBetteridge PetscErrorCode DMCountNonCyclicReferences(PetscObject dm, PetscInt *ncrefct) 60062e5d2d2SJDBetteridge { 60162e5d2d2SJDBetteridge PetscFunctionBegin; 60262e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal((DM)dm, PETSC_TRUE, PETSC_TRUE, ncrefct)); 6033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 60462e5d2d2SJDBetteridge } 60562e5d2d2SJDBetteridge 606d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyLabelLinkList_Internal(DM dm) 607d71ae5a4SJacob Faibussowitsch { 6085d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 609354557abSToby Isaac 610354557abSToby Isaac PetscFunctionBegin; 611354557abSToby Isaac /* destroy the labels */ 612354557abSToby Isaac while (next) { 613354557abSToby Isaac DMLabelLink tmp = next->next; 614354557abSToby Isaac 6155d80c0bfSVaclav Hapla if (next->label == dm->depthLabel) dm->depthLabel = NULL; 616ba2698f1SMatthew G. Knepley if (next->label == dm->celltypeLabel) dm->celltypeLabel = NULL; 6179566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 6189566063dSJacob Faibussowitsch PetscCall(PetscFree(next)); 619354557abSToby Isaac next = tmp; 620354557abSToby Isaac } 6215d80c0bfSVaclav Hapla dm->labels = NULL; 6223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 623354557abSToby Isaac } 624354557abSToby Isaac 62566976f2fSJacob Faibussowitsch static PetscErrorCode DMDestroyCoordinates_Private(DMCoordinates *c) 626d71ae5a4SJacob Faibussowitsch { 6276858538eSMatthew G. Knepley PetscFunctionBegin; 6286858538eSMatthew G. Knepley c->dim = PETSC_DEFAULT; 6296858538eSMatthew G. Knepley PetscCall(DMDestroy(&c->dm)); 6306858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->x)); 6316858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->xl)); 6326858538eSMatthew G. Knepley PetscCall(DMFieldDestroy(&c->field)); 6333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6346858538eSMatthew G. Knepley } 6356858538eSMatthew G. Knepley 6360764c050SBarry Smith /*@ 637bb7acecfSBarry Smith DMDestroy - Destroys a `DM`. 63847c6ae99SBarry Smith 63920f4b53cSBarry Smith Collective 64047c6ae99SBarry Smith 64147c6ae99SBarry Smith Input Parameter: 642bb7acecfSBarry Smith . dm - the `DM` object to destroy 64347c6ae99SBarry Smith 64447c6ae99SBarry Smith Level: developer 64547c6ae99SBarry Smith 6461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMType`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 64747c6ae99SBarry Smith @*/ 648d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroy(DM *dm) 649d71ae5a4SJacob Faibussowitsch { 6506eb26441SStefano Zampini PetscInt cnt; 65147c6ae99SBarry Smith 65247c6ae99SBarry Smith PetscFunctionBegin; 6533ba16761SJacob Faibussowitsch if (!*dm) PetscFunctionReturn(PETSC_SUCCESS); 654f4f49eeaSPierre Jolivet PetscValidHeaderSpecific(*dm, DM_CLASSID, 1); 65587e657c6SBarry Smith 65688bdff64SToby Isaac /* count all non-cyclic references in the doubly-linked list of coarse<->fine meshes */ 65762e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(*dm, PETSC_TRUE, PETSC_TRUE, &cnt)); 658f4f49eeaSPierre Jolivet --((PetscObject)*dm)->refct; 6599371c9d4SSatish Balay if (--cnt > 0) { 6609371c9d4SSatish Balay *dm = NULL; 6613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6629371c9d4SSatish Balay } 663f4f49eeaSPierre Jolivet if (((PetscObject)*dm)->refct < 0) PetscFunctionReturn(PETSC_SUCCESS); 664f4f49eeaSPierre Jolivet ((PetscObject)*dm)->refct = 0; 6656eb26441SStefano Zampini 6669566063dSJacob Faibussowitsch PetscCall(DMClearGlobalVectors(*dm)); 6679566063dSJacob Faibussowitsch PetscCall(DMClearLocalVectors(*dm)); 668974ca4ecSStefano Zampini PetscCall(DMClearNamedGlobalVectors(*dm)); 669974ca4ecSStefano Zampini PetscCall(DMClearNamedLocalVectors(*dm)); 6702348bcf4SPeter Brune 671b17ce1afSJed Brown /* Destroy the list of hooks */ 672c833c3b5SJed Brown { 673c833c3b5SJed Brown DMCoarsenHookLink link, next; 674b17ce1afSJed Brown for (link = (*dm)->coarsenhook; link; link = next) { 675b17ce1afSJed Brown next = link->next; 6769566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 677b17ce1afSJed Brown } 6780298fd71SBarry Smith (*dm)->coarsenhook = NULL; 679c833c3b5SJed Brown } 680c833c3b5SJed Brown { 681c833c3b5SJed Brown DMRefineHookLink link, next; 682c833c3b5SJed Brown for (link = (*dm)->refinehook; link; link = next) { 683c833c3b5SJed Brown next = link->next; 6849566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 685c833c3b5SJed Brown } 6860298fd71SBarry Smith (*dm)->refinehook = NULL; 687c833c3b5SJed Brown } 688be081cd6SPeter Brune { 689be081cd6SPeter Brune DMSubDomainHookLink link, next; 690be081cd6SPeter Brune for (link = (*dm)->subdomainhook; link; link = next) { 691be081cd6SPeter Brune next = link->next; 6929566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 693be081cd6SPeter Brune } 6940298fd71SBarry Smith (*dm)->subdomainhook = NULL; 695be081cd6SPeter Brune } 696baf369e7SPeter Brune { 697baf369e7SPeter Brune DMGlobalToLocalHookLink link, next; 698baf369e7SPeter Brune for (link = (*dm)->gtolhook; link; link = next) { 699baf369e7SPeter Brune next = link->next; 7009566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 701baf369e7SPeter Brune } 7020298fd71SBarry Smith (*dm)->gtolhook = NULL; 703baf369e7SPeter Brune } 704d4d07f1eSToby Isaac { 705d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, next; 706d4d07f1eSToby Isaac for (link = (*dm)->ltoghook; link; link = next) { 707d4d07f1eSToby Isaac next = link->next; 7089566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 709d4d07f1eSToby Isaac } 710d4d07f1eSToby Isaac (*dm)->ltoghook = NULL; 711d4d07f1eSToby Isaac } 712aa1993deSMatthew G Knepley /* Destroy the work arrays */ 713aa1993deSMatthew G Knepley { 714aa1993deSMatthew G Knepley DMWorkLink link, next; 715835f2295SStefano Zampini PetscCheck(!(*dm)->workout, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Work array still checked out %p %p", (void *)(*dm)->workout, (*dm)->workout->mem); 716aa1993deSMatthew G Knepley for (link = (*dm)->workin; link; link = next) { 717aa1993deSMatthew G Knepley next = link->next; 7189566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 7199566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 720aa1993deSMatthew G Knepley } 7210298fd71SBarry Smith (*dm)->workin = NULL; 722aa1993deSMatthew G Knepley } 723c58f1c22SToby Isaac /* destroy the labels */ 7249566063dSJacob Faibussowitsch PetscCall(DMDestroyLabelLinkList_Internal(*dm)); 725f4cdcedcSVaclav Hapla /* destroy the fields */ 7269566063dSJacob Faibussowitsch PetscCall(DMClearFields(*dm)); 727f4cdcedcSVaclav Hapla /* destroy the boundaries */ 728e6f8dbb6SToby Isaac { 729e6f8dbb6SToby Isaac DMBoundary next = (*dm)->boundary; 730e6f8dbb6SToby Isaac while (next) { 731e6f8dbb6SToby Isaac DMBoundary b = next; 732e6f8dbb6SToby Isaac 733e6f8dbb6SToby Isaac next = b->next; 7349566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 735e6f8dbb6SToby Isaac } 736e6f8dbb6SToby Isaac } 737b17ce1afSJed Brown 7389566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmksp)); 7399566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmsnes)); 7409566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmts)); 74152536dc3SBarry Smith 74248a46eb9SPierre Jolivet if ((*dm)->ctx && (*dm)->ctxdestroy) PetscCall((*(*dm)->ctxdestroy)(&(*dm)->ctx)); 7439566063dSJacob Faibussowitsch PetscCall(MatFDColoringDestroy(&(*dm)->fd)); 7449566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&(*dm)->ltogmap)); 7459566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->vectype)); 7469566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->mattype)); 74788ed4aceSMatthew G Knepley 7489566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->localSection)); 7499566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->globalSection)); 750adc21957SMatthew G. Knepley PetscCall(PetscFree((*dm)->reorderSectionType)); 7519566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&(*dm)->map)); 7529566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->defaultConstraint.section)); 7539566063dSJacob Faibussowitsch PetscCall(MatDestroy(&(*dm)->defaultConstraint.mat)); 7549566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sf)); 7559566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sectionSF)); 75648a46eb9SPierre Jolivet if ((*dm)->sfNatural) PetscCall(PetscSFDestroy(&(*dm)->sfNatural)); 7579566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)(*dm)->sfMigration)); 758e4d5475eSStefano Zampini PetscCall(DMClearAuxiliaryVec(*dm)); 7599566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDestroy(&(*dm)->auxData)); 76048a46eb9SPierre Jolivet if ((*dm)->coarseMesh && (*dm)->coarseMesh->fineMesh == *dm) PetscCall(DMSetFineDM((*dm)->coarseMesh, NULL)); 7616eb26441SStefano Zampini 7629566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->coarseMesh)); 76348a46eb9SPierre Jolivet if ((*dm)->fineMesh && (*dm)->fineMesh->coarseMesh == *dm) PetscCall(DMSetCoarseDM((*dm)->fineMesh, NULL)); 7649566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->fineMesh)); 7654fb89dddSMatthew G. Knepley PetscCall(PetscFree((*dm)->Lstart)); 7669566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->L)); 7679566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->maxCell)); 7686858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[0])); 7696858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[1])); 7709566063dSJacob Faibussowitsch if ((*dm)->transformDestroy) PetscCall((*(*dm)->transformDestroy)(*dm, (*dm)->transformCtx)); 7719566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->transformDM)); 7729566063dSJacob Faibussowitsch PetscCall(VecDestroy(&(*dm)->transform)); 773ddedc8f6SJames Wright for (PetscInt i = 0; i < (*dm)->periodic.num_affines; i++) { 774ddedc8f6SJames Wright PetscCall(VecScatterDestroy(&(*dm)->periodic.affine_to_local[i])); 775ddedc8f6SJames Wright PetscCall(VecDestroy(&(*dm)->periodic.affine[i])); 776ddedc8f6SJames Wright } 777ddedc8f6SJames Wright if ((*dm)->periodic.num_affines > 0) PetscCall(PetscFree2((*dm)->periodic.affine_to_local, (*dm)->periodic.affine)); 7786636e97aSMatthew G Knepley 7799566063dSJacob Faibussowitsch PetscCall(DMClearDS(*dm)); 7809566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->dmBC)); 781e04113cfSBarry Smith /* if memory was published with SAWs then destroy it */ 7829566063dSJacob Faibussowitsch PetscCall(PetscObjectSAWsViewOff((PetscObject)*dm)); 783732e2eb9SMatthew G Knepley 784213acdd3SPierre Jolivet PetscTryTypeMethod(*dm, destroy); 7859566063dSJacob Faibussowitsch PetscCall(DMMonitorCancel(*dm)); 786d2b2dc1eSMatthew G. Knepley PetscCall(DMCeedDestroy(&(*dm)->dmceed)); 787f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 7889566063dSJacob Faibussowitsch PetscCallCEED(CeedElemRestrictionDestroy(&(*dm)->ceedERestrict)); 7899566063dSJacob Faibussowitsch PetscCallCEED(CeedDestroy(&(*dm)->ceed)); 790f918ec44SMatthew G. Knepley #endif 791435a35e8SMatthew G Knepley /* We do not destroy (*dm)->data here so that we can reference count backend objects */ 7929566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(dm)); 7933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 79447c6ae99SBarry Smith } 79547c6ae99SBarry Smith 796d7bf68aeSBarry Smith /*@ 797bb7acecfSBarry Smith DMSetUp - sets up the data structures inside a `DM` object 798d7bf68aeSBarry Smith 79920f4b53cSBarry Smith Collective 800d7bf68aeSBarry Smith 801d7bf68aeSBarry Smith Input Parameter: 802bb7acecfSBarry Smith . dm - the `DM` object to setup 803d7bf68aeSBarry Smith 804bb7acecfSBarry Smith Level: intermediate 805d7bf68aeSBarry Smith 806bb7acecfSBarry Smith Note: 807bb7acecfSBarry Smith This is usually called after various parameter setting operations and `DMSetFromOptions()` are called on the `DM` 808bb7acecfSBarry Smith 8091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 810d7bf68aeSBarry Smith @*/ 811d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUp(DM dm) 812d71ae5a4SJacob Faibussowitsch { 813d7bf68aeSBarry Smith PetscFunctionBegin; 814171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8153ba16761SJacob Faibussowitsch if (dm->setupcalled) PetscFunctionReturn(PETSC_SUCCESS); 816dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setup); 8178387afaaSJed Brown dm->setupcalled = PETSC_TRUE; 8183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 819d7bf68aeSBarry Smith } 820d7bf68aeSBarry Smith 821d7bf68aeSBarry Smith /*@ 822bb7acecfSBarry Smith DMSetFromOptions - sets parameters in a `DM` from the options database 823d7bf68aeSBarry Smith 82420f4b53cSBarry Smith Collective 825d7bf68aeSBarry Smith 826d7bf68aeSBarry Smith Input Parameter: 827bb7acecfSBarry Smith . dm - the `DM` object to set options for 828d7bf68aeSBarry Smith 82920f4b53cSBarry Smith Options Database Keys: 830bb7acecfSBarry Smith + -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 831bb7acecfSBarry Smith . -dm_vec_type <type> - type of vector to create inside `DM` 832bb7acecfSBarry Smith . -dm_mat_type <type> - type of matrix to create inside `DM` 833a4ea9b21SRichard Tran Mills . -dm_is_coloring_type - <global or local> 83420f4b53cSBarry Smith . -dm_bind_below <n> - bind (force execution on CPU) for `Vec` and `Mat` objects with local size (number of vector entries or matrix rows) below n; currently only supported for `DMDA` 83522d6dc08SStefano Zampini . -dm_plex_option_phases <ph0_, ph1_, ...> - List of prefixes for option processing phases 83620f4b53cSBarry Smith . -dm_plex_filename <str> - File containing a mesh 8379318fe57SMatthew G. Knepley . -dm_plex_boundary_filename <str> - File containing a mesh boundary 838cd7e8a5eSksagiyam . -dm_plex_name <str> - Name of the mesh in the file 8395dca41c3SJed Brown . -dm_plex_shape <shape> - The domain shape, such as `BOX`, `SPHERE`, etc. 8409318fe57SMatthew G. Knepley . -dm_plex_cell <ct> - Cell shape 8419318fe57SMatthew G. Knepley . -dm_plex_reference_cell_domain <bool> - Use a reference cell domain 8429318fe57SMatthew G. Knepley . -dm_plex_dim <dim> - Set the topological dimension 843bb7acecfSBarry Smith . -dm_plex_simplex <bool> - `PETSC_TRUE` for simplex elements, `PETSC_FALSE` for tensor elements 844bb7acecfSBarry Smith . -dm_plex_interpolate <bool> - `PETSC_TRUE` turns on topological interpolation (creating edges and faces) 845b9da1bb3SMatthew G. Knepley . -dm_plex_orient <bool> - `PETSC_TRUE` turns on topological orientation (flipping edges and faces) 8469318fe57SMatthew G. Knepley . -dm_plex_scale <sc> - Scale factor for mesh coordinates 847be664eb1SMatthew G. Knepley . -dm_coord_remap <bool> - Map coordinates using a function 848ac9d17c7SMatthew G. Knepley . -dm_plex_coordinate_dim <dim> - Change the coordinate dimension of a mesh (usually given with cdm_ prefix) 849be664eb1SMatthew G. Knepley . -dm_coord_map <mapname> - Select a builtin coordinate map 850be664eb1SMatthew G. Knepley . -dm_coord_map_params <p0,p1,p2,...> - Set coordinate mapping parameters 8519318fe57SMatthew G. Knepley . -dm_plex_box_faces <m,n,p> - Number of faces along each dimension 8529318fe57SMatthew G. Knepley . -dm_plex_box_lower <x,y,z> - Specify lower-left-bottom coordinates for the box 8539318fe57SMatthew G. Knepley . -dm_plex_box_upper <x,y,z> - Specify upper-right-top coordinates for the box 854bb7acecfSBarry Smith . -dm_plex_box_bd <bx,by,bz> - Specify the `DMBoundaryType` for each direction 8559318fe57SMatthew G. Knepley . -dm_plex_sphere_radius <r> - The sphere radius 8569318fe57SMatthew G. Knepley . -dm_plex_ball_radius <r> - Radius of the ball 8579318fe57SMatthew G. Knepley . -dm_plex_cylinder_bd <bz> - Boundary type in the z direction 8589318fe57SMatthew G. Knepley . -dm_plex_cylinder_num_wedges <n> - Number of wedges around the cylinder 859bdf63967SMatthew G. Knepley . -dm_plex_reorder <order> - Reorder the mesh using the specified algorithm 8609318fe57SMatthew G. Knepley . -dm_refine_pre <n> - The number of refinements before distribution 8619318fe57SMatthew G. Knepley . -dm_refine_uniform_pre <bool> - Flag for uniform refinement before distribution 8629318fe57SMatthew G. Knepley . -dm_refine_volume_limit_pre <v> - The maximum cell volume after refinement before distribution 8639318fe57SMatthew G. Knepley . -dm_refine <n> - The number of refinements after distribution 864bdf63967SMatthew G. Knepley . -dm_extrude <l> - Activate extrusion and specify the number of layers to extrude 865d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thickness <t> - The total thickness of extruded layers 866d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_use_tensor <bool> - Use tensor cells when extruding 867d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_symmetric <bool> - Extrude layers symmetrically about the surface 868d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_normal <n0,...,nd> - Specify the extrusion direction 869d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thicknesses <t0,...,tl> - Specify thickness of each layer 870909dfd52SMatthew G. Knepley . -dm_plex_create_fv_ghost_cells - Flag to create finite volume ghost cells on the boundary 871909dfd52SMatthew G. Knepley . -dm_plex_fv_ghost_cells_label <name> - Label name for ghost cells boundary 8729318fe57SMatthew G. Knepley . -dm_distribute <bool> - Flag to redistribute a mesh among processes 8739318fe57SMatthew G. Knepley . -dm_distribute_overlap <n> - The size of the overlap halo 8749318fe57SMatthew G. Knepley . -dm_plex_adj_cone <bool> - Set adjacency direction 87520f4b53cSBarry Smith . -dm_plex_adj_closure <bool> - Set adjacency size 876d2b2dc1eSMatthew G. Knepley . -dm_plex_use_ceed <bool> - Use LibCEED as the FEM backend 87720f4b53cSBarry Smith . -dm_plex_check_symmetry - Check that the adjacency information in the mesh is symmetric - `DMPlexCheckSymmetry()` 878bb7acecfSBarry Smith . -dm_plex_check_skeleton - Check that each cell has the correct number of vertices (only for homogeneous simplex or tensor meshes) - `DMPlexCheckSkeleton()` 879bb7acecfSBarry Smith . -dm_plex_check_faces - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type - `DMPlexCheckFaces()` 880bb7acecfSBarry Smith . -dm_plex_check_geometry - Check that cells have positive volume - `DMPlexCheckGeometry()` 881bb7acecfSBarry Smith . -dm_plex_check_pointsf - Check some necessary conditions for `PointSF` - `DMPlexCheckPointSF()` 882bb7acecfSBarry Smith . -dm_plex_check_interface_cones - Check points on inter-partition interfaces have conforming order of cone points - `DMPlexCheckInterfaceCones()` 883384a6580SVaclav Hapla - -dm_plex_check_all - Perform all the checks above 884d7bf68aeSBarry Smith 88595eb5ee5SVaclav Hapla Level: intermediate 88695eb5ee5SVaclav Hapla 8878e704042SBarry Smith Note: 8888e704042SBarry Smith For some `DMType` such as `DMDA` this cannot be called after `DMSetUp()` has been called. 8898e704042SBarry Smith 8901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 891bb7acecfSBarry Smith `DMPlexCheckSymmetry()`, `DMPlexCheckSkeleton()`, `DMPlexCheckFaces()`, `DMPlexCheckGeometry()`, `DMPlexCheckPointSF()`, `DMPlexCheckInterfaceCones()`, 8928e704042SBarry Smith `DMSetOptionsPrefix()`, `DMType`, `DMPLEX`, `DMDA`, `DMSetUp()` 893d7bf68aeSBarry Smith @*/ 894d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFromOptions(DM dm) 895d71ae5a4SJacob Faibussowitsch { 8967781c08eSBarry Smith char typeName[256]; 897ca266f36SBarry Smith PetscBool flg; 898d7bf68aeSBarry Smith 899d7bf68aeSBarry Smith PetscFunctionBegin; 900171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 90149be4549SMatthew G. Knepley dm->setfromoptionscalled = PETSC_TRUE; 9029566063dSJacob Faibussowitsch if (dm->sf) PetscCall(PetscSFSetFromOptions(dm->sf)); 9039566063dSJacob Faibussowitsch if (dm->sectionSF) PetscCall(PetscSFSetFromOptions(dm->sectionSF)); 904dd4c3f67SMatthew G. Knepley if (dm->coordinates[0].dm) PetscCall(DMSetFromOptions(dm->coordinates[0].dm)); 905d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)dm); 9069566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_preallocate_only", "only preallocate matrix, but do not set column indices", "DMSetMatrixPreallocateOnly", dm->prealloc_only, &dm->prealloc_only, NULL)); 9079566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_vec_type", "Vector type used for created vectors", "DMSetVecType", VecList, dm->vectype, typeName, 256, &flg)); 9081baa6e33SBarry Smith if (flg) PetscCall(DMSetVecType(dm, typeName)); 9099566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_mat_type", "Matrix type used for created matrices", "DMSetMatType", MatList, dm->mattype ? dm->mattype : typeName, typeName, sizeof(typeName), &flg)); 9101baa6e33SBarry Smith if (flg) PetscCall(DMSetMatType(dm, typeName)); 911863027abSJed Brown PetscCall(PetscOptionsEnum("-dm_blocking_type", "Topological point or field node blocking", "DMSetBlockingType", DMBlockingTypes, (PetscEnum)dm->blocking_type, (PetscEnum *)&dm->blocking_type, NULL)); 9129566063dSJacob Faibussowitsch PetscCall(PetscOptionsEnum("-dm_is_coloring_type", "Global or local coloring of Jacobian", "DMSetISColoringType", ISColoringTypes, (PetscEnum)dm->coloringtype, (PetscEnum *)&dm->coloringtype, NULL)); 9139566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-dm_bind_below", "Set the size threshold (in entries) below which the Vec is bound to the CPU", "VecBindToCPU", dm->bind_below, &dm->bind_below, &flg)); 914eb9d3e4dSMatthew G. Knepley PetscCall(PetscOptionsBool("-dm_ignore_perm_output", "Ignore the local section permutation on output", "DMGetOutputDM", dm->ignorePermOutput, &dm->ignorePermOutput, NULL)); 915dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setfromoptions, PetscOptionsObject); 916f9ba7244SBarry Smith /* process any options handlers added with PetscObjectAddOptionsHandler() */ 917dbbe0bcdSBarry Smith PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)dm, PetscOptionsObject)); 918d0609cedSBarry Smith PetscOptionsEnd(); 9193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 920d7bf68aeSBarry Smith } 921d7bf68aeSBarry Smith 922ffeef943SBarry Smith /*@ 923bb7acecfSBarry Smith DMViewFromOptions - View a `DM` in a particular way based on a request in the options database 924fe2efc57SMark 92520f4b53cSBarry Smith Collective 926fe2efc57SMark 927fe2efc57SMark Input Parameters: 928bb7acecfSBarry Smith + dm - the `DM` object 929ce78bad3SBarry Smith . obj - optional object that provides the prefix for the options database (if `NULL` then the prefix in `obj` is used) 93060225df5SJacob Faibussowitsch - name - option string that is used to activate viewing 931fe2efc57SMark 932fe2efc57SMark Level: intermediate 933bb7acecfSBarry Smith 934bb7acecfSBarry Smith Note: 935bb7acecfSBarry Smith See `PetscObjectViewFromOptions()` for a list of values that can be provided in the options database to determine how the `DM` is viewed 936bb7acecfSBarry Smith 93760225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `PetscObjectViewFromOptions()`, `DMCreate()` 938fe2efc57SMark @*/ 939ce78bad3SBarry Smith PetscErrorCode DMViewFromOptions(DM dm, PeOp PetscObject obj, const char name[]) 940d71ae5a4SJacob Faibussowitsch { 941fe2efc57SMark PetscFunctionBegin; 942fe2efc57SMark PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9439566063dSJacob Faibussowitsch PetscCall(PetscObjectViewFromOptions((PetscObject)dm, obj, name)); 9443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 945fe2efc57SMark } 946fe2efc57SMark 947ffeef943SBarry Smith /*@ 948bb7acecfSBarry Smith DMView - Views a `DM`. Depending on the `PetscViewer` and its `PetscViewerFormat` it may print some ASCII information about the `DM` to the screen or a file or 949bb7acecfSBarry Smith save the `DM` in a binary file to be loaded later or create a visualization of the `DM` 95047c6ae99SBarry Smith 95120f4b53cSBarry Smith Collective 95247c6ae99SBarry Smith 953d8d19677SJose E. Roman Input Parameters: 954bb7acecfSBarry Smith + dm - the `DM` object to view 95547c6ae99SBarry Smith - v - the viewer 95647c6ae99SBarry Smith 957c8a418c4SMatthew G. Knepley Options Database Keys: 958c8a418c4SMatthew G. Knepley + -view_pyvista_warp <f> - Warps the mesh by the active scalar with factor f 959c8a418c4SMatthew G. Knepley - -view_pyvista_clip <xl,xu,yl,yu,zl,zu> - Defines the clipping box 960c8a418c4SMatthew G. Knepley 96120f4b53cSBarry Smith Level: beginner 96220f4b53cSBarry Smith 96349c89c76SBlaise Bourdin Notes: 96449c89c76SBlaise Bourdin 96549c89c76SBlaise Bourdin `PetscViewer` = `PETSCVIEWERHDF5` i.e. HDF5 format can be used with `PETSC_VIEWER_HDF5_PETSC` as the `PetscViewerFormat` to save multiple `DMPLEX` 966bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 967bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 968cd7e8a5eSksagiyam 96949c89c76SBlaise Bourdin `PetscViewer` = `PETSCVIEWEREXODUSII` i.e. ExodusII format assumes that element blocks (mapped to "Cell sets" labels) 97049c89c76SBlaise Bourdin consists of sequentially numbered cells. 97149c89c76SBlaise Bourdin 97249c89c76SBlaise Bourdin If `dm` has been distributed, only the part of the `DM` on MPI rank 0 (including "ghost" cells and vertices) will be written. 97349c89c76SBlaise Bourdin 974c8a418c4SMatthew G. Knepley Only TRI, TET, QUAD, and HEX cells are supported in ExodusII. 97549c89c76SBlaise Bourdin 97649c89c76SBlaise Bourdin `DMPLEX` only represents geometry while most post-processing software expect that a mesh also provides information on the discretization space. This function assumes that the file represents Lagrange finite elements of order 1 or 2. 97749c89c76SBlaise Bourdin The order of the mesh shall be set using `PetscViewerExodusIISetOrder()` 97849c89c76SBlaise Bourdin 979d7c1f440SPierre Jolivet Variable names can be set and queried using `PetscViewerExodusII[Set/Get][Nodal/Zonal]VariableNames[s]`. 98049c89c76SBlaise Bourdin 9811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewer`, `PetscViewerFormat`, `PetscViewerSetFormat()`, `DMDestroy()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMLoad()`, `PetscObjectSetName()` 98247c6ae99SBarry Smith @*/ 983d71ae5a4SJacob Faibussowitsch PetscErrorCode DMView(DM dm, PetscViewer v) 984d71ae5a4SJacob Faibussowitsch { 98532c0f0efSBarry Smith PetscBool isbinary; 98676a8abe0SBarry Smith PetscMPIInt size; 98776a8abe0SBarry Smith PetscViewerFormat format; 98847c6ae99SBarry Smith 98947c6ae99SBarry Smith PetscFunctionBegin; 990171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 99148a46eb9SPierre Jolivet if (!v) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &v)); 992b1b135c8SBarry Smith PetscValidHeaderSpecific(v, PETSC_VIEWER_CLASSID, 2); 99374903a4fSStefano Zampini /* Ideally, we would like to have this test on. 99474903a4fSStefano Zampini However, it currently breaks socket viz via GLVis. 99574903a4fSStefano Zampini During DMView(parallel_mesh,glvis_viewer), each 99674903a4fSStefano Zampini process opens a sequential ASCII socket to visualize 99774903a4fSStefano Zampini the local mesh, and PetscObjectView(dm,local_socket) 99874903a4fSStefano Zampini is internally called inside VecView_GLVis, incurring 99974903a4fSStefano Zampini in an error here */ 100074903a4fSStefano Zampini /* PetscCheckSameComm(dm,1,v,2); */ 10019566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckWritable(v)); 1002b1b135c8SBarry Smith 100342d0c57aSJames Wright PetscCall(PetscLogEventBegin(DM_View, v, 0, 0, 0)); 10049566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(v, &format)); 10059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 10063ba16761SJacob Faibussowitsch if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(PETSC_SUCCESS); 10079566063dSJacob Faibussowitsch PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)dm, v)); 10089566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)v, PETSCVIEWERBINARY, &isbinary)); 100932c0f0efSBarry Smith if (isbinary) { 101055849f57SBarry Smith PetscInt classid = DM_FILE_CLASSID; 101132c0f0efSBarry Smith char type[256]; 101232c0f0efSBarry Smith 10139566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, &classid, 1, PETSC_INT)); 1014c6a7a370SJeremy L Thompson PetscCall(PetscStrncpy(type, ((PetscObject)dm)->type_name, sizeof(type))); 10159566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, type, 256, PETSC_CHAR)); 101632c0f0efSBarry Smith } 1017dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, view, v); 101842d0c57aSJames Wright PetscCall(PetscLogEventEnd(DM_View, v, 0, 0, 0)); 10193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 102047c6ae99SBarry Smith } 102147c6ae99SBarry Smith 102247c6ae99SBarry Smith /*@ 1023bb7acecfSBarry Smith DMCreateGlobalVector - Creates a global vector from a `DM` object. A global vector is a parallel vector that has no duplicate values shared between MPI ranks, 1024bb7acecfSBarry Smith that is it has no ghost locations. 102547c6ae99SBarry Smith 102620f4b53cSBarry Smith Collective 102747c6ae99SBarry Smith 102847c6ae99SBarry Smith Input Parameter: 1029bb7acecfSBarry Smith . dm - the `DM` object 103047c6ae99SBarry Smith 103147c6ae99SBarry Smith Output Parameter: 103247c6ae99SBarry Smith . vec - the global vector 103347c6ae99SBarry Smith 1034073dac72SJed Brown Level: beginner 103547c6ae99SBarry Smith 10361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1037bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 103847c6ae99SBarry Smith @*/ 1039d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateGlobalVector(DM dm, Vec *vec) 1040d71ae5a4SJacob Faibussowitsch { 104147c6ae99SBarry Smith PetscFunctionBegin; 1042171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10434f572ea9SToby Isaac PetscAssertPointer(vec, 2); 1044dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createglobalvector, vec); 104576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1046c6b011d8SStefano Zampini DM vdm; 1047c6b011d8SStefano Zampini 10489566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10497a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1050c6b011d8SStefano Zampini } 10513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 105247c6ae99SBarry Smith } 105347c6ae99SBarry Smith 105447c6ae99SBarry Smith /*@ 1055bb7acecfSBarry Smith DMCreateLocalVector - Creates a local vector from a `DM` object. 105647c6ae99SBarry Smith 105747c6ae99SBarry Smith Not Collective 105847c6ae99SBarry Smith 105947c6ae99SBarry Smith Input Parameter: 1060bb7acecfSBarry Smith . dm - the `DM` object 106147c6ae99SBarry Smith 106247c6ae99SBarry Smith Output Parameter: 106347c6ae99SBarry Smith . vec - the local vector 106447c6ae99SBarry Smith 1065073dac72SJed Brown Level: beginner 106647c6ae99SBarry Smith 106720f4b53cSBarry Smith Note: 1068bb7acecfSBarry Smith A local vector usually has ghost locations that contain values that are owned by different MPI ranks. A global vector has no ghost locations. 1069bb7acecfSBarry Smith 10701cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 1071bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 107247c6ae99SBarry Smith @*/ 1073d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLocalVector(DM dm, Vec *vec) 1074d71ae5a4SJacob Faibussowitsch { 107547c6ae99SBarry Smith PetscFunctionBegin; 1076171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10774f572ea9SToby Isaac PetscAssertPointer(vec, 2); 1078dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalvector, vec); 107976bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1080c6b011d8SStefano Zampini DM vdm; 1081c6b011d8SStefano Zampini 10829566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10837a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_LIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1084c6b011d8SStefano Zampini } 10853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 108647c6ae99SBarry Smith } 108747c6ae99SBarry Smith 10881411c6eeSJed Brown /*@ 1089bb7acecfSBarry Smith DMGetLocalToGlobalMapping - Accesses the local-to-global mapping in a `DM`. 10901411c6eeSJed Brown 109120f4b53cSBarry Smith Collective 10921411c6eeSJed Brown 10931411c6eeSJed Brown Input Parameter: 1094bb7acecfSBarry Smith . dm - the `DM` that provides the mapping 10951411c6eeSJed Brown 10961411c6eeSJed Brown Output Parameter: 10971411c6eeSJed Brown . ltog - the mapping 10981411c6eeSJed Brown 1099bb7acecfSBarry Smith Level: advanced 11001411c6eeSJed Brown 11011411c6eeSJed Brown Notes: 1102bb7acecfSBarry Smith The global to local mapping allows one to set values into the global vector or matrix using `VecSetValuesLocal()` and `MatSetValuesLocal()` 11031411c6eeSJed Brown 1104bb7acecfSBarry Smith Vectors obtained with `DMCreateGlobalVector()` and matrices obtained with `DMCreateMatrix()` already contain the global mapping so you do 1105bb7acecfSBarry Smith need to use this function with those objects. 1106bb7acecfSBarry Smith 1107bb7acecfSBarry Smith This mapping can then be used by `VecSetLocalToGlobalMapping()` or `MatSetLocalToGlobalMapping()`. 1108bb7acecfSBarry Smith 110960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `VecSetLocalToGlobalMapping()`, `MatSetLocalToGlobalMapping()`, 1110bb7acecfSBarry Smith `DMCreateMatrix()` 11111411c6eeSJed Brown @*/ 1112d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalToGlobalMapping(DM dm, ISLocalToGlobalMapping *ltog) 1113d71ae5a4SJacob Faibussowitsch { 11140be3e97aSMatthew G. Knepley PetscInt bs = -1, bsLocal[2], bsMinMax[2]; 11151411c6eeSJed Brown 11161411c6eeSJed Brown PetscFunctionBegin; 11171411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11184f572ea9SToby Isaac PetscAssertPointer(ltog, 2); 11191411c6eeSJed Brown if (!dm->ltogmap) { 112037d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 112137d0c07bSMatthew G Knepley 11229566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 112337d0c07bSMatthew G Knepley if (section) { 1124a974ec88SMatthew G. Knepley const PetscInt *cdofs; 112537d0c07bSMatthew G Knepley PetscInt *ltog; 1126ccf3bd66SMatthew G. Knepley PetscInt pStart, pEnd, n, p, k, l; 112737d0c07bSMatthew G Knepley 11289566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 11299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 11309566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(section, &n)); 11319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, <og)); /* We want the local+overlap size */ 113237d0c07bSMatthew G Knepley for (p = pStart, l = 0; p < pEnd; ++p) { 1133e6befd46SJed Brown PetscInt bdof, cdof, dof, off, c, cind; 113437d0c07bSMatthew G Knepley 113537d0c07bSMatthew G Knepley /* Should probably use constrained dofs */ 11369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, p, &dof)); 11379566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(section, p, &cdof)); 11389566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(section, p, &cdofs)); 11399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &off)); 11401a7dc684SMatthew G. Knepley /* If you have dofs, and constraints, and they are unequal, we set the blocksize to 1 */ 11411a7dc684SMatthew G. Knepley bdof = cdof && (dof - cdof) ? 1 : dof; 1142ad540459SPierre Jolivet if (dof) bs = bs < 0 ? bdof : PetscGCD(bs, bdof); 11435227eafbSStefano Zampini 1144e6befd46SJed Brown for (c = 0, cind = 0; c < dof; ++c, ++l) { 11455227eafbSStefano Zampini if (cind < cdof && c == cdofs[cind]) { 1146e6befd46SJed Brown ltog[l] = off < 0 ? off - c : -(off + c + 1); 1147e6befd46SJed Brown cind++; 1148e6befd46SJed Brown } else { 11495227eafbSStefano Zampini ltog[l] = (off < 0 ? -(off + 1) : off) + c - cind; 1150e6befd46SJed Brown } 115137d0c07bSMatthew G Knepley } 115237d0c07bSMatthew G Knepley } 1153bff27382SMatthew G. Knepley /* Must have same blocksize on all procs (some might have no points) */ 11541690c2aeSBarry Smith bsLocal[0] = bs < 0 ? PETSC_INT_MAX : bs; 11559371c9d4SSatish Balay bsLocal[1] = bs; 11569566063dSJacob Faibussowitsch PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)dm), bsLocal, bsMinMax)); 11579371c9d4SSatish Balay if (bsMinMax[0] != bsMinMax[1]) { 11589371c9d4SSatish Balay bs = 1; 11599371c9d4SSatish Balay } else { 11609371c9d4SSatish Balay bs = bsMinMax[0]; 11619371c9d4SSatish Balay } 11627591dbb2SMatthew G. Knepley bs = bs < 0 ? 1 : bs; 11637591dbb2SMatthew G. Knepley /* Must reduce indices by blocksize */ 1164ccf3bd66SMatthew G. Knepley if (bs > 1) { 1165ca469d19SJed Brown for (l = 0, k = 0; l < n; l += bs, ++k) { 1166ca469d19SJed Brown // Integer division of negative values truncates toward zero(!), not toward negative infinity 1167ca469d19SJed Brown ltog[k] = ltog[l] >= 0 ? ltog[l] / bs : -(-(ltog[l] + 1) / bs + 1); 1168ca469d19SJed Brown } 1169ccf3bd66SMatthew G. Knepley n /= bs; 1170ccf3bd66SMatthew G. Knepley } 11719566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm), bs, n, ltog, PETSC_OWN_POINTER, &dm->ltogmap)); 1172dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, getlocaltoglobalmapping); 117337d0c07bSMatthew G Knepley } 11741411c6eeSJed Brown *ltog = dm->ltogmap; 11753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11761411c6eeSJed Brown } 11771411c6eeSJed Brown 11781411c6eeSJed Brown /*@ 1179bb7acecfSBarry Smith DMGetBlockSize - Gets the inherent block size associated with a `DM` 11801411c6eeSJed Brown 11811411c6eeSJed Brown Not Collective 11821411c6eeSJed Brown 11831411c6eeSJed Brown Input Parameter: 1184bb7acecfSBarry Smith . dm - the `DM` with block structure 11851411c6eeSJed Brown 11861411c6eeSJed Brown Output Parameter: 11871411c6eeSJed Brown . bs - the block size, 1 implies no exploitable block structure 11881411c6eeSJed Brown 11891411c6eeSJed Brown Level: intermediate 11901411c6eeSJed Brown 119173ff1848SBarry Smith Notes: 1192bb7acecfSBarry Smith This might be the number of degrees of freedom at each grid point for a structured grid. 1193bb7acecfSBarry Smith 1194bb7acecfSBarry Smith Complex `DM` that represent multiphysics or staggered grids or mixed-methods do not generally have a single inherent block size, but 1195bb7acecfSBarry Smith rather different locations in the vectors may have a different block size. 1196bb7acecfSBarry Smith 11971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISCreateBlock()`, `VecSetBlockSize()`, `MatSetBlockSize()`, `DMGetLocalToGlobalMapping()` 11981411c6eeSJed Brown @*/ 1199d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBlockSize(DM dm, PetscInt *bs) 1200d71ae5a4SJacob Faibussowitsch { 12011411c6eeSJed Brown PetscFunctionBegin; 12021411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 12034f572ea9SToby Isaac PetscAssertPointer(bs, 2); 12047a8be351SBarry Smith PetscCheck(dm->bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM does not have enough information to provide a block size yet"); 12051411c6eeSJed Brown *bs = dm->bs; 12063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12071411c6eeSJed Brown } 12081411c6eeSJed Brown 1209ffeef943SBarry Smith /*@ 1210bb7acecfSBarry Smith DMCreateInterpolation - Gets the interpolation matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1211bb7acecfSBarry Smith `DMCreateGlobalVector()` on the coarse `DM` to similar vectors on the fine grid `DM`. 121247c6ae99SBarry Smith 121320f4b53cSBarry Smith Collective 121447c6ae99SBarry Smith 1215d8d19677SJose E. Roman Input Parameters: 1216bb7acecfSBarry Smith + dmc - the `DM` object 1217bb7acecfSBarry Smith - dmf - the second, finer `DM` object 121847c6ae99SBarry Smith 1219d8d19677SJose E. Roman Output Parameters: 122047c6ae99SBarry Smith + mat - the interpolation 1221b6971eaeSBarry Smith - vec - the scaling (optional, pass `NULL` if not needed), see `DMCreateInterpolationScale()` 122247c6ae99SBarry Smith 122347c6ae99SBarry Smith Level: developer 122447c6ae99SBarry Smith 122595452b02SPatrick Sanan Notes: 1226bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1227bb7acecfSBarry Smith DMCoarsen(). The coordinates set into the `DMDA` are completely ignored in computing the interpolation. 1228d52bd9f3SBarry Smith 1229bb7acecfSBarry Smith For `DMDA` objects you can use this interpolation (more precisely the interpolation from the `DMGetCoordinateDM()`) to interpolate the mesh coordinate 1230bb7acecfSBarry Smith vectors EXCEPT in the periodic case where it does not make sense since the coordinate vectors are not periodic. 123185afcc9aSBarry Smith 12321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolationScale()` 123347c6ae99SBarry Smith @*/ 1234d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolation(DM dmc, DM dmf, Mat *mat, Vec *vec) 1235d71ae5a4SJacob Faibussowitsch { 123647c6ae99SBarry Smith PetscFunctionBegin; 1237a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1238a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 12394f572ea9SToby Isaac PetscAssertPointer(mat, 3); 12409566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInterpolation, dmc, dmf, 0, 0)); 1241dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createinterpolation, dmf, mat, vec); 12429566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInterpolation, dmc, dmf, 0, 0)); 12433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 124447c6ae99SBarry Smith } 124547c6ae99SBarry Smith 12463ad4599aSBarry Smith /*@ 1247a4e35b19SJacob Faibussowitsch DMCreateInterpolationScale - Forms L = 1/(R*1) where 1 is the vector of all ones, and R is 1248a4e35b19SJacob Faibussowitsch the transpose of the interpolation between the `DM`. 12492ed6491fSPatrick Sanan 12502ed6491fSPatrick Sanan Input Parameters: 1251bb7acecfSBarry Smith + dac - `DM` that defines a coarse mesh 1252bb7acecfSBarry Smith . daf - `DM` that defines a fine mesh 12532ed6491fSPatrick Sanan - mat - the restriction (or interpolation operator) from fine to coarse 12542ed6491fSPatrick Sanan 12552ed6491fSPatrick Sanan Output Parameter: 12562ed6491fSPatrick Sanan . scale - the scaled vector 12572ed6491fSPatrick Sanan 1258bb7acecfSBarry Smith Level: advanced 12592ed6491fSPatrick Sanan 126073ff1848SBarry Smith Note: 1261a4e35b19SJacob Faibussowitsch xcoarse = diag(L)*R*xfine preserves scale and is thus suitable for state (versus residual) 1262a4e35b19SJacob Faibussowitsch restriction. In other words xcoarse is the coarse representation of xfine. 1263a4e35b19SJacob Faibussowitsch 126473ff1848SBarry Smith Developer Note: 1265bb7acecfSBarry Smith If the fine-scale `DMDA` has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()` 1266e9c74fd6SRichard Tran Mills on the restriction/interpolation operator to set the bindingpropagates flag to true. 1267e9c74fd6SRichard Tran Mills 126860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatRestrict()`, `MatInterpolate()`, `DMCreateInterpolation()`, `DMCreateRestriction()`, `DMCreateGlobalVector()` 12692ed6491fSPatrick Sanan @*/ 1270d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolationScale(DM dac, DM daf, Mat mat, Vec *scale) 1271d71ae5a4SJacob Faibussowitsch { 12722ed6491fSPatrick Sanan Vec fine; 12732ed6491fSPatrick Sanan PetscScalar one = 1.0; 12749704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 1275e9c74fd6SRichard Tran Mills PetscBool bindingpropagates, isbound; 12769704db99SRichard Tran Mills #endif 12772ed6491fSPatrick Sanan 12782ed6491fSPatrick Sanan PetscFunctionBegin; 12799566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(daf, &fine)); 12809566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(dac, scale)); 12819566063dSJacob Faibussowitsch PetscCall(VecSet(fine, one)); 12829704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 12839704db99SRichard Tran Mills /* If the 'fine' Vec is bound to the CPU, it makes sense to bind 'mat' as well. 12849704db99SRichard Tran Mills * Note that we only do this for the CUDA case, right now, but if we add support for MatMultTranspose() via ViennaCL, 12859704db99SRichard Tran Mills * we'll need to do it for that case, too.*/ 12869566063dSJacob Faibussowitsch PetscCall(VecGetBindingPropagates(fine, &bindingpropagates)); 1287e9c74fd6SRichard Tran Mills if (bindingpropagates) { 12889566063dSJacob Faibussowitsch PetscCall(MatSetBindingPropagates(mat, PETSC_TRUE)); 12899566063dSJacob Faibussowitsch PetscCall(VecBoundToCPU(fine, &isbound)); 12909566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mat, isbound)); 129183aa49f4SRichard Tran Mills } 12929704db99SRichard Tran Mills #endif 12939566063dSJacob Faibussowitsch PetscCall(MatRestrict(mat, fine, *scale)); 12949566063dSJacob Faibussowitsch PetscCall(VecDestroy(&fine)); 12959566063dSJacob Faibussowitsch PetscCall(VecReciprocal(*scale)); 12963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12972ed6491fSPatrick Sanan } 12982ed6491fSPatrick Sanan 12992ed6491fSPatrick Sanan /*@ 1300bb7acecfSBarry Smith DMCreateRestriction - Gets restriction matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1301bb7acecfSBarry Smith `DMCreateGlobalVector()` on the fine `DM` to similar vectors on the coarse grid `DM`. 13023ad4599aSBarry Smith 130320f4b53cSBarry Smith Collective 13043ad4599aSBarry Smith 1305d8d19677SJose E. Roman Input Parameters: 1306bb7acecfSBarry Smith + dmc - the `DM` object 1307bb7acecfSBarry Smith - dmf - the second, finer `DM` object 13083ad4599aSBarry Smith 13093ad4599aSBarry Smith Output Parameter: 13103ad4599aSBarry Smith . mat - the restriction 13113ad4599aSBarry Smith 13123ad4599aSBarry Smith Level: developer 13133ad4599aSBarry Smith 1314bb7acecfSBarry Smith Note: 1315bb7acecfSBarry Smith This only works for `DMSTAG`. For many situations either the transpose of the operator obtained with `DMCreateInterpolation()` or that 1316bb7acecfSBarry Smith matrix multiplied by the vector obtained with `DMCreateInterpolationScale()` provides the desired object. 13173ad4599aSBarry Smith 13181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRestrict()`, `DMInterpolate()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateInterpolation()` 13193ad4599aSBarry Smith @*/ 1320d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateRestriction(DM dmc, DM dmf, Mat *mat) 1321d71ae5a4SJacob Faibussowitsch { 13223ad4599aSBarry Smith PetscFunctionBegin; 1323a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1324a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 13254f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13269566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateRestriction, dmc, dmf, 0, 0)); 1327dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createrestriction, dmf, mat); 13289566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateRestriction, dmc, dmf, 0, 0)); 13293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13303ad4599aSBarry Smith } 13313ad4599aSBarry Smith 133247c6ae99SBarry Smith /*@ 1333a4e35b19SJacob Faibussowitsch DMCreateInjection - Gets injection matrix between two `DM` objects. 133447c6ae99SBarry Smith 133520f4b53cSBarry Smith Collective 133647c6ae99SBarry Smith 1337d8d19677SJose E. Roman Input Parameters: 1338bb7acecfSBarry Smith + dac - the `DM` object 1339bb7acecfSBarry Smith - daf - the second, finer `DM` object 134047c6ae99SBarry Smith 134147c6ae99SBarry Smith Output Parameter: 13426dbf9973SLawrence Mitchell . mat - the injection 134347c6ae99SBarry Smith 134447c6ae99SBarry Smith Level: developer 134547c6ae99SBarry Smith 1346a4e35b19SJacob Faibussowitsch Notes: 1347a4e35b19SJacob Faibussowitsch This is an operator that applied to a vector obtained with `DMCreateGlobalVector()` on the 1348a4e35b19SJacob Faibussowitsch fine grid maps the values to a vector on the vector on the coarse `DM` by simply selecting 1349a4e35b19SJacob Faibussowitsch the values on the coarse grid points. This compares to the operator obtained by 1350a4e35b19SJacob Faibussowitsch `DMCreateRestriction()` or the transpose of the operator obtained by 1351a4e35b19SJacob Faibussowitsch `DMCreateInterpolation()` that uses a "local weighted average" of the values around the 1352a4e35b19SJacob Faibussowitsch coarse grid point as the coarse grid value. 1353a4e35b19SJacob Faibussowitsch 1354bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1355bb7acecfSBarry Smith `DMCoarsen()`. The coordinates set into the `DMDA` are completely ignored in computing the injection. 135685afcc9aSBarry Smith 13571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateInterpolation()`, 1358bb7acecfSBarry Smith `DMCreateRestriction()`, `MatRestrict()`, `MatInterpolate()` 135947c6ae99SBarry Smith @*/ 1360d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInjection(DM dac, DM daf, Mat *mat) 1361d71ae5a4SJacob Faibussowitsch { 136247c6ae99SBarry Smith PetscFunctionBegin; 1363a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dac, DM_CLASSID, 1); 1364a5bc1bf3SBarry Smith PetscValidHeaderSpecific(daf, DM_CLASSID, 2); 13654f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13669566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInjection, dac, daf, 0, 0)); 1367dbbe0bcdSBarry Smith PetscUseTypeMethod(dac, createinjection, daf, mat); 13689566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInjection, dac, daf, 0, 0)); 13693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 137047c6ae99SBarry Smith } 137147c6ae99SBarry Smith 1372b412c318SBarry Smith /*@ 1373bb7acecfSBarry Smith DMCreateMassMatrix - Gets the mass matrix between two `DM` objects, M_ij = \int \phi_i \psi_j where the \phi are Galerkin basis functions for a 1374bb7acecfSBarry Smith a Galerkin finite element model on the `DM` 1375bd041c0cSMatthew G. Knepley 137620f4b53cSBarry Smith Collective 1377bd041c0cSMatthew G. Knepley 1378d8d19677SJose E. Roman Input Parameters: 1379bb7acecfSBarry Smith + dmc - the target `DM` object 13808c1c0954SStefano Zampini - dmf - the source `DM` object, can be `NULL` 1381bd041c0cSMatthew G. Knepley 1382bd041c0cSMatthew G. Knepley Output Parameter: 1383b4937a87SMatthew G. Knepley . mat - the mass matrix 1384bd041c0cSMatthew G. Knepley 1385bd041c0cSMatthew G. Knepley Level: developer 1386bd041c0cSMatthew G. Knepley 1387bb7acecfSBarry Smith Notes: 1388bb7acecfSBarry Smith For `DMPLEX` the finite element model for the `DM` must have been already provided. 1389bb7acecfSBarry Smith 13908c1c0954SStefano Zampini if `dmc` is `dmf` or `NULL`, then x^t M x is an approximation to the L2 norm of the vector x which is obtained by `DMCreateGlobalVector()` 1391bb7acecfSBarry Smith 139242747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrixLumped()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1393bd041c0cSMatthew G. Knepley @*/ 1394d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrix(DM dmc, DM dmf, Mat *mat) 1395d71ae5a4SJacob Faibussowitsch { 1396bd041c0cSMatthew G. Knepley PetscFunctionBegin; 1397b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 13988c1c0954SStefano Zampini if (!dmf) dmf = dmc; 1399b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 14004f572ea9SToby Isaac PetscAssertPointer(mat, 3); 14018c1c0954SStefano Zampini PetscCall(PetscLogEventBegin(DM_CreateMassMatrix, dmc, dmf, 0, 0)); 1402dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createmassmatrix, dmf, mat); 14038c1c0954SStefano Zampini PetscCall(PetscLogEventEnd(DM_CreateMassMatrix, dmc, dmf, 0, 0)); 14043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1405b4937a87SMatthew G. Knepley } 1406b4937a87SMatthew G. Knepley 1407b4937a87SMatthew G. Knepley /*@ 1408bb7acecfSBarry Smith DMCreateMassMatrixLumped - Gets the lumped mass matrix for a given `DM` 1409b4937a87SMatthew G. Knepley 141020f4b53cSBarry Smith Collective 1411b4937a87SMatthew G. Knepley 1412b4937a87SMatthew G. Knepley Input Parameter: 1413bb7acecfSBarry Smith . dm - the `DM` object 1414b4937a87SMatthew G. Knepley 14157dcfde4dSJose E. Roman Output Parameters: 14168e9849d2SStefano Zampini + llm - the local lumped mass matrix, which is a diagonal matrix, represented as a vector 14178e9849d2SStefano Zampini - lm - the global lumped mass matrix, which is a diagonal matrix, represented as a vector 1418b4937a87SMatthew G. Knepley 1419b4937a87SMatthew G. Knepley Level: developer 1420b4937a87SMatthew G. Knepley 1421bb7acecfSBarry Smith Note: 1422bb7acecfSBarry Smith See `DMCreateMassMatrix()` for how to create the non-lumped version of the mass matrix. 1423bb7acecfSBarry Smith 142460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrix()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1425b4937a87SMatthew G. Knepley @*/ 14268e9849d2SStefano Zampini PetscErrorCode DMCreateMassMatrixLumped(DM dm, Vec *llm, Vec *lm) 1427d71ae5a4SJacob Faibussowitsch { 1428b4937a87SMatthew G. Knepley PetscFunctionBegin; 1429b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14308e9849d2SStefano Zampini if (llm) PetscAssertPointer(llm, 2); 14318e9849d2SStefano Zampini if (lm) PetscAssertPointer(lm, 3); 14328e9849d2SStefano Zampini if (llm || lm) PetscUseTypeMethod(dm, createmassmatrixlumped, llm, lm); 14333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1434bd041c0cSMatthew G. Knepley } 1435bd041c0cSMatthew G. Knepley 1436bd041c0cSMatthew G. Knepley /*@ 1437bb7acecfSBarry Smith DMCreateColoring - Gets coloring of a graph associated with the `DM`. Often the graph represents the operator matrix associated with the discretization 1438bb7acecfSBarry Smith of a PDE on the `DM`. 143947c6ae99SBarry Smith 144020f4b53cSBarry Smith Collective 144147c6ae99SBarry Smith 1442d8d19677SJose E. Roman Input Parameters: 1443bb7acecfSBarry Smith + dm - the `DM` object 1444bb7acecfSBarry Smith - ctype - `IS_COLORING_LOCAL` or `IS_COLORING_GLOBAL` 144547c6ae99SBarry Smith 144647c6ae99SBarry Smith Output Parameter: 144747c6ae99SBarry Smith . coloring - the coloring 144847c6ae99SBarry Smith 14491bf8429eSBarry Smith Level: developer 14501bf8429eSBarry Smith 1451ec5066bdSBarry Smith Notes: 1452bb7acecfSBarry Smith Coloring of matrices can also be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 1453bb7acecfSBarry Smith matrix comes from (what this function provides). In general using the mesh produces a more optimal coloring (fewer colors). 1454ec5066bdSBarry Smith 1455bb7acecfSBarry Smith This produces a coloring with the distance of 2, see `MatSetColoringDistance()` which can be used for efficiently computing Jacobians with `MatFDColoringCreate()` 14561bf8429eSBarry Smith For `DMDA` in three dimensions with periodic boundary conditions the number of grid points in each dimension must be divisible by 2*stencil_width + 1, 14571bf8429eSBarry Smith otherwise an error will be generated. 1458ec5066bdSBarry Smith 14591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISColoring`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatType()`, `MatColoring`, `MatFDColoringCreate()` 1460aab9d709SJed Brown @*/ 1461d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateColoring(DM dm, ISColoringType ctype, ISColoring *coloring) 1462d71ae5a4SJacob Faibussowitsch { 146347c6ae99SBarry Smith PetscFunctionBegin; 1464171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14654f572ea9SToby Isaac PetscAssertPointer(coloring, 3); 1466dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getcoloring, ctype, coloring); 14673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 146847c6ae99SBarry Smith } 146947c6ae99SBarry Smith 1470b412c318SBarry Smith /*@ 1471bb7acecfSBarry Smith DMCreateMatrix - Gets an empty matrix for a `DM` that is most commonly used to store the Jacobian of a discrete PDE operator. 147247c6ae99SBarry Smith 147320f4b53cSBarry Smith Collective 147447c6ae99SBarry Smith 147547c6ae99SBarry Smith Input Parameter: 1476bb7acecfSBarry Smith . dm - the `DM` object 147747c6ae99SBarry Smith 147847c6ae99SBarry Smith Output Parameter: 147947c6ae99SBarry Smith . mat - the empty Jacobian 148047c6ae99SBarry Smith 148120f4b53cSBarry Smith Options Database Key: 1482bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 1483f27dd7c6SMatthew G. Knepley 148420f4b53cSBarry Smith Level: beginner 148520f4b53cSBarry Smith 148695452b02SPatrick Sanan Notes: 148795452b02SPatrick Sanan This properly preallocates the number of nonzeros in the sparse matrix so you 148894013140SBarry Smith do not need to do it yourself. 148994013140SBarry Smith 149094013140SBarry Smith By default it also sets the nonzero structure and puts in the zero entries. To prevent setting 1491bb7acecfSBarry Smith the nonzero pattern call `DMSetMatrixPreallocateOnly()` 149294013140SBarry Smith 1493bb7acecfSBarry Smith For `DMDA`, when you call `MatView()` on this matrix it is displayed using the global natural ordering, NOT in the ordering used 149494013140SBarry Smith internally by PETSc. 149594013140SBarry Smith 1496bb7acecfSBarry Smith For `DMDA`, in general it is easiest to use `MatSetValuesStencil()` or `MatSetValuesLocal()` to put values into the matrix because 1497bb7acecfSBarry Smith `MatSetValues()` requires the indices for the global numbering for the `DMDA` which is complic`ated to compute 149894013140SBarry Smith 14991cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMSetMatType()`, `DMCreateMassMatrix()` 1500aab9d709SJed Brown @*/ 1501d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMatrix(DM dm, Mat *mat) 1502d71ae5a4SJacob Faibussowitsch { 150347c6ae99SBarry Smith PetscFunctionBegin; 1504171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 15054f572ea9SToby Isaac PetscAssertPointer(mat, 2); 15069566063dSJacob Faibussowitsch PetscCall(MatInitializePackage()); 15079566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateMatrix, 0, 0, 0, 0)); 1508dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, creatematrix, mat); 150976bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1510c6b011d8SStefano Zampini DM mdm; 1511c6b011d8SStefano Zampini 15129566063dSJacob Faibussowitsch PetscCall(MatGetDM(*mat, &mdm)); 15137a8be351SBarry Smith PetscCheck(mdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the matrix", ((PetscObject)dm)->type_name); 1514c6b011d8SStefano Zampini } 1515e571a35bSMatthew G. Knepley /* Handle nullspace and near nullspace */ 1516e5e52638SMatthew G. Knepley if (dm->Nf) { 1517e571a35bSMatthew G. Knepley MatNullSpace nullSpace; 1518649ef022SMatthew Knepley PetscInt Nf, f; 1519e571a35bSMatthew G. Knepley 15209566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 1521649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1522649ef022SMatthew Knepley if (dm->nullspaceConstructors[f]) { 15239566063dSJacob Faibussowitsch PetscCall((*dm->nullspaceConstructors[f])(dm, f, f, &nullSpace)); 15249566063dSJacob Faibussowitsch PetscCall(MatSetNullSpace(*mat, nullSpace)); 15259566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1526649ef022SMatthew Knepley break; 1527e571a35bSMatthew G. Knepley } 1528649ef022SMatthew Knepley } 1529649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1530649ef022SMatthew Knepley if (dm->nearnullspaceConstructors[f]) { 15319566063dSJacob Faibussowitsch PetscCall((*dm->nearnullspaceConstructors[f])(dm, f, f, &nullSpace)); 15329566063dSJacob Faibussowitsch PetscCall(MatSetNearNullSpace(*mat, nullSpace)); 15339566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1534e571a35bSMatthew G. Knepley } 1535e571a35bSMatthew G. Knepley } 1536e571a35bSMatthew G. Knepley } 15379566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateMatrix, 0, 0, 0, 0)); 15383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 153947c6ae99SBarry Smith } 154047c6ae99SBarry Smith 1541732e2eb9SMatthew G Knepley /*@ 1542a4e35b19SJacob Faibussowitsch DMSetMatrixPreallocateSkip - When `DMCreateMatrix()` is called the matrix sizes and 1543a4e35b19SJacob Faibussowitsch `ISLocalToGlobalMapping` will be properly set, but the data structures to store values in the 1544a4e35b19SJacob Faibussowitsch matrices will not be preallocated. 1545aa0f6e3cSJed Brown 154620f4b53cSBarry Smith Logically Collective 1547aa0f6e3cSJed Brown 1548aa0f6e3cSJed Brown Input Parameters: 1549bb7acecfSBarry Smith + dm - the `DM` 1550bb7acecfSBarry Smith - skip - `PETSC_TRUE` to skip preallocation 1551aa0f6e3cSJed Brown 1552aa0f6e3cSJed Brown Level: developer 1553aa0f6e3cSJed Brown 155473ff1848SBarry Smith Note: 1555a4e35b19SJacob Faibussowitsch This is most useful to reduce initialization costs when `MatSetPreallocationCOO()` and 1556a4e35b19SJacob Faibussowitsch `MatSetValuesCOO()` will be used. 1557a4e35b19SJacob Faibussowitsch 15581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateOnly()` 1559aa0f6e3cSJed Brown @*/ 1560d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateSkip(DM dm, PetscBool skip) 1561d71ae5a4SJacob Faibussowitsch { 1562aa0f6e3cSJed Brown PetscFunctionBegin; 1563aa0f6e3cSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1564aa0f6e3cSJed Brown dm->prealloc_skip = skip; 15653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1566aa0f6e3cSJed Brown } 1567aa0f6e3cSJed Brown 1568aa0f6e3cSJed Brown /*@ 1569bb7acecfSBarry Smith DMSetMatrixPreallocateOnly - When `DMCreateMatrix()` is called the matrix will be properly 1570732e2eb9SMatthew G Knepley preallocated but the nonzero structure and zero values will not be set. 1571732e2eb9SMatthew G Knepley 157220f4b53cSBarry Smith Logically Collective 1573732e2eb9SMatthew G Knepley 1574d8d19677SJose E. Roman Input Parameters: 1575bb7acecfSBarry Smith + dm - the `DM` 1576bb7acecfSBarry Smith - only - `PETSC_TRUE` if only want preallocation 1577732e2eb9SMatthew G Knepley 157820f4b53cSBarry Smith Options Database Key: 1579bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()`, `DMCreateMassMatrix()`, but do not fill it with zeros 1580f27dd7c6SMatthew G. Knepley 158120f4b53cSBarry Smith Level: developer 158220f4b53cSBarry Smith 15831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateSkip()` 1584732e2eb9SMatthew G Knepley @*/ 1585d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateOnly(DM dm, PetscBool only) 1586d71ae5a4SJacob Faibussowitsch { 1587732e2eb9SMatthew G Knepley PetscFunctionBegin; 1588732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1589732e2eb9SMatthew G Knepley dm->prealloc_only = only; 15903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1591732e2eb9SMatthew G Knepley } 1592732e2eb9SMatthew G Knepley 1593b06ff27eSHong Zhang /*@ 15940b4b7b1cSBarry Smith DMSetMatrixStructureOnly - When `DMCreateMatrix()` is called, the matrix nonzero structure will be created 1595bb7acecfSBarry Smith but the array for numerical values will not be allocated. 1596b06ff27eSHong Zhang 159720f4b53cSBarry Smith Logically Collective 1598b06ff27eSHong Zhang 1599d8d19677SJose E. Roman Input Parameters: 1600bb7acecfSBarry Smith + dm - the `DM` 16010b4b7b1cSBarry Smith - only - `PETSC_TRUE` if you only want matrix nonzero structure 1602b06ff27eSHong Zhang 1603b06ff27eSHong Zhang Level: developer 1604bb7acecfSBarry Smith 16051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMSetMatrixPreallocateSkip()` 1606b06ff27eSHong Zhang @*/ 1607d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixStructureOnly(DM dm, PetscBool only) 1608d71ae5a4SJacob Faibussowitsch { 1609b06ff27eSHong Zhang PetscFunctionBegin; 1610b06ff27eSHong Zhang PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1611b06ff27eSHong Zhang dm->structure_only = only; 16123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1613b06ff27eSHong Zhang } 1614b06ff27eSHong Zhang 1615863027abSJed Brown /*@ 1616863027abSJed Brown DMSetBlockingType - set the blocking granularity to be used for variable block size `DMCreateMatrix()` is called 1617863027abSJed Brown 161820f4b53cSBarry Smith Logically Collective 1619863027abSJed Brown 1620863027abSJed Brown Input Parameters: 1621863027abSJed Brown + dm - the `DM` 1622863027abSJed Brown - btype - block by topological point or field node 1623863027abSJed Brown 162420f4b53cSBarry Smith Options Database Key: 16250e762ea3SJed Brown . -dm_blocking_type [topological_point, field_node] - use topological point blocking or field node blocking 1626863027abSJed Brown 162720f4b53cSBarry Smith Level: advanced 162820f4b53cSBarry Smith 16291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()` 1630863027abSJed Brown @*/ 1631863027abSJed Brown PetscErrorCode DMSetBlockingType(DM dm, DMBlockingType btype) 1632863027abSJed Brown { 1633863027abSJed Brown PetscFunctionBegin; 1634863027abSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1635863027abSJed Brown dm->blocking_type = btype; 16363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1637863027abSJed Brown } 1638863027abSJed Brown 1639863027abSJed Brown /*@ 1640863027abSJed Brown DMGetBlockingType - get the blocking granularity to be used for variable block size `DMCreateMatrix()` is called 1641863027abSJed Brown 1642863027abSJed Brown Not Collective 1643863027abSJed Brown 16442fe279fdSBarry Smith Input Parameter: 1645863027abSJed Brown . dm - the `DM` 1646863027abSJed Brown 16472fe279fdSBarry Smith Output Parameter: 1648863027abSJed Brown . btype - block by topological point or field node 1649863027abSJed Brown 1650863027abSJed Brown Level: advanced 1651863027abSJed Brown 16521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()` 1653863027abSJed Brown @*/ 1654863027abSJed Brown PetscErrorCode DMGetBlockingType(DM dm, DMBlockingType *btype) 1655863027abSJed Brown { 1656863027abSJed Brown PetscFunctionBegin; 1657863027abSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16584f572ea9SToby Isaac PetscAssertPointer(btype, 2); 1659863027abSJed Brown *btype = dm->blocking_type; 16603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1661863027abSJed Brown } 1662863027abSJed Brown 1663a89ea682SMatthew G Knepley /*@C 1664bb7acecfSBarry Smith DMGetWorkArray - Gets a work array guaranteed to be at least the input size, restore with `DMRestoreWorkArray()` 1665a89ea682SMatthew G Knepley 1666a89ea682SMatthew G Knepley Not Collective 1667a89ea682SMatthew G Knepley 1668a89ea682SMatthew G Knepley Input Parameters: 1669bb7acecfSBarry Smith + dm - the `DM` object 1670a5b23f4aSJose E. Roman . count - The minimum size 167120f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, or `MPIU_INT`) 1672a89ea682SMatthew G Knepley 1673a89ea682SMatthew G Knepley Output Parameter: 167460225df5SJacob Faibussowitsch . mem - the work array 1675a89ea682SMatthew G Knepley 1676a89ea682SMatthew G Knepley Level: developer 1677a89ea682SMatthew G Knepley 167873ff1848SBarry Smith Notes: 1679da81f932SPierre Jolivet A `DM` may stash the array between instantiations so using this routine may be more efficient than calling `PetscMalloc()` 1680bb7acecfSBarry Smith 1681bb7acecfSBarry Smith The array may contain nonzero values 1682bb7acecfSBarry Smith 16831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMRestoreWorkArray()`, `PetscMalloc()` 1684a89ea682SMatthew G Knepley @*/ 1685d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1686d71ae5a4SJacob Faibussowitsch { 1687aa1993deSMatthew G Knepley DMWorkLink link; 168869291d52SBarry Smith PetscMPIInt dsize; 1689a89ea682SMatthew G Knepley 1690a89ea682SMatthew G Knepley PetscFunctionBegin; 1691a89ea682SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16924f572ea9SToby Isaac PetscAssertPointer(mem, 4); 1693442f3b32SStefano Zampini if (!count) { 1694442f3b32SStefano Zampini *(void **)mem = NULL; 1695442f3b32SStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 1696442f3b32SStefano Zampini } 1697aa1993deSMatthew G Knepley if (dm->workin) { 1698aa1993deSMatthew G Knepley link = dm->workin; 1699aa1993deSMatthew G Knepley dm->workin = dm->workin->next; 1700aa1993deSMatthew G Knepley } else { 17014dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&link)); 1702a89ea682SMatthew G Knepley } 1703b77fa653SStefano Zampini /* Avoid MPI_Type_size for most used datatypes 1704b77fa653SStefano Zampini Get size directly */ 1705b77fa653SStefano Zampini if (dtype == MPIU_INT) dsize = sizeof(PetscInt); 1706b77fa653SStefano Zampini else if (dtype == MPIU_REAL) dsize = sizeof(PetscReal); 1707b77fa653SStefano Zampini #if defined(PETSC_USE_64BIT_INDICES) 1708b77fa653SStefano Zampini else if (dtype == MPI_INT) dsize = sizeof(int); 1709b77fa653SStefano Zampini #endif 1710b77fa653SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1711b77fa653SStefano Zampini else if (dtype == MPIU_SCALAR) dsize = sizeof(PetscScalar); 1712b77fa653SStefano Zampini #endif 1713b77fa653SStefano Zampini else PetscCallMPI(MPI_Type_size(dtype, &dsize)); 1714b77fa653SStefano Zampini 17155056fcd2SBarry Smith if (((size_t)dsize * count) > link->bytes) { 17169566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 17179566063dSJacob Faibussowitsch PetscCall(PetscMalloc(dsize * count, &link->mem)); 1718854ce69bSBarry Smith link->bytes = dsize * count; 1719aa1993deSMatthew G Knepley } 1720aa1993deSMatthew G Knepley link->next = dm->workout; 1721aa1993deSMatthew G Knepley dm->workout = link; 1722aa1993deSMatthew G Knepley *(void **)mem = link->mem; 17233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1724a89ea682SMatthew G Knepley } 1725a89ea682SMatthew G Knepley 1726aa1993deSMatthew G Knepley /*@C 1727bb7acecfSBarry Smith DMRestoreWorkArray - Restores a work array obtained with `DMCreateWorkArray()` 1728aa1993deSMatthew G Knepley 1729aa1993deSMatthew G Knepley Not Collective 1730aa1993deSMatthew G Knepley 1731aa1993deSMatthew G Knepley Input Parameters: 1732bb7acecfSBarry Smith + dm - the `DM` object 1733a5b23f4aSJose E. Roman . count - The minimum size 173420f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, `MPIU_INT` 1735aa1993deSMatthew G Knepley 1736aa1993deSMatthew G Knepley Output Parameter: 173760225df5SJacob Faibussowitsch . mem - the work array 1738aa1993deSMatthew G Knepley 1739aa1993deSMatthew G Knepley Level: developer 1740aa1993deSMatthew G Knepley 174173ff1848SBarry Smith Developer Note: 1742bb7acecfSBarry Smith count and dtype are ignored, they are only needed for `DMGetWorkArray()` 1743147403d9SBarry Smith 17441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMGetWorkArray()` 1745aa1993deSMatthew G Knepley @*/ 1746d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestoreWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1747d71ae5a4SJacob Faibussowitsch { 1748aa1993deSMatthew G Knepley DMWorkLink *p, link; 1749aa1993deSMatthew G Knepley 1750aa1993deSMatthew G Knepley PetscFunctionBegin; 17514f572ea9SToby Isaac PetscAssertPointer(mem, 4); 1752a4e35b19SJacob Faibussowitsch (void)count; 1753a4e35b19SJacob Faibussowitsch (void)dtype; 1754442f3b32SStefano Zampini if (!*(void **)mem) PetscFunctionReturn(PETSC_SUCCESS); 1755aa1993deSMatthew G Knepley for (p = &dm->workout; (link = *p); p = &link->next) { 1756aa1993deSMatthew G Knepley if (link->mem == *(void **)mem) { 1757aa1993deSMatthew G Knepley *p = link->next; 1758aa1993deSMatthew G Knepley link->next = dm->workin; 1759aa1993deSMatthew G Knepley dm->workin = link; 17600298fd71SBarry Smith *(void **)mem = NULL; 17613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1762aa1993deSMatthew G Knepley } 1763aa1993deSMatthew G Knepley } 1764aa1993deSMatthew G Knepley SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Array was not checked out"); 1765aa1993deSMatthew G Knepley } 1766e7c4fc90SDmitry Karpeev 17678cda7954SMatthew G. Knepley /*@C 1768bb7acecfSBarry Smith DMSetNullSpaceConstructor - Provide a callback function which constructs the nullspace for a given field, defined with `DMAddField()`, when function spaces 1769bb7acecfSBarry Smith are joined or split, such as in `DMCreateSubDM()` 17708cda7954SMatthew G. Knepley 177120f4b53cSBarry Smith Logically Collective; No Fortran Support 17728cda7954SMatthew G. Knepley 17738cda7954SMatthew G. Knepley Input Parameters: 1774bb7acecfSBarry Smith + dm - The `DM` 17758cda7954SMatthew G. Knepley . field - The field number for the nullspace 17768cda7954SMatthew G. Knepley - nullsp - A callback to create the nullspace 17778cda7954SMatthew G. Knepley 177820f4b53cSBarry Smith Calling sequence of `nullsp`: 1779bb7acecfSBarry Smith + dm - The present `DM` 1780bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1781147403d9SBarry Smith . field - The field number in dm 1782147403d9SBarry Smith - nullSpace - The nullspace for the given field 17838cda7954SMatthew G. Knepley 178449762cbcSSatish Balay Level: intermediate 178549762cbcSSatish Balay 17861cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1787147403d9SBarry Smith @*/ 1788a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1789d71ae5a4SJacob Faibussowitsch { 1790435a35e8SMatthew G Knepley PetscFunctionBegin; 1791435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17927a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1793435a35e8SMatthew G Knepley dm->nullspaceConstructors[field] = nullsp; 17943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1795435a35e8SMatthew G Knepley } 1796435a35e8SMatthew G Knepley 17978cda7954SMatthew G. Knepley /*@C 1798bb7acecfSBarry Smith DMGetNullSpaceConstructor - Return the callback function which constructs the nullspace for a given field, defined with `DMAddField()` 17998cda7954SMatthew G. Knepley 180020f4b53cSBarry Smith Not Collective; No Fortran Support 18018cda7954SMatthew G. Knepley 18028cda7954SMatthew G. Knepley Input Parameters: 1803bb7acecfSBarry Smith + dm - The `DM` 18048cda7954SMatthew G. Knepley - field - The field number for the nullspace 18058cda7954SMatthew G. Knepley 18068cda7954SMatthew G. Knepley Output Parameter: 18078cda7954SMatthew G. Knepley . nullsp - A callback to create the nullspace 18088cda7954SMatthew G. Knepley 180920f4b53cSBarry Smith Calling sequence of `nullsp`: 1810147403d9SBarry Smith + dm - The present DM 1811147403d9SBarry Smith . origField - The field number given above, in the original DM 1812147403d9SBarry Smith . field - The field number in dm 1813147403d9SBarry Smith - nullSpace - The nullspace for the given field 18148cda7954SMatthew G. Knepley 181549762cbcSSatish Balay Level: intermediate 181649762cbcSSatish Balay 18171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1818147403d9SBarry Smith @*/ 1819a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1820d71ae5a4SJacob Faibussowitsch { 18210a50eb56SMatthew G. Knepley PetscFunctionBegin; 18220a50eb56SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18234f572ea9SToby Isaac PetscAssertPointer(nullsp, 3); 18247a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 18250a50eb56SMatthew G. Knepley *nullsp = dm->nullspaceConstructors[field]; 18263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18270a50eb56SMatthew G. Knepley } 18280a50eb56SMatthew G. Knepley 18298cda7954SMatthew G. Knepley /*@C 1830bb7acecfSBarry Smith DMSetNearNullSpaceConstructor - Provide a callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 18318cda7954SMatthew G. Knepley 183220f4b53cSBarry Smith Logically Collective; No Fortran Support 18338cda7954SMatthew G. Knepley 18348cda7954SMatthew G. Knepley Input Parameters: 1835bb7acecfSBarry Smith + dm - The `DM` 18368cda7954SMatthew G. Knepley . field - The field number for the nullspace 18378cda7954SMatthew G. Knepley - nullsp - A callback to create the near-nullspace 18388cda7954SMatthew G. Knepley 183920f4b53cSBarry Smith Calling sequence of `nullsp`: 1840bb7acecfSBarry Smith + dm - The present `DM` 1841bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1842147403d9SBarry Smith . field - The field number in dm 1843147403d9SBarry Smith - nullSpace - The nullspace for the given field 18448cda7954SMatthew G. Knepley 184549762cbcSSatish Balay Level: intermediate 184649762cbcSSatish Balay 18471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`, 1848bb7acecfSBarry Smith `MatNullSpace` 1849147403d9SBarry Smith @*/ 1850a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1851d71ae5a4SJacob Faibussowitsch { 1852f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1853f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18547a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1855f9d4088aSMatthew G. Knepley dm->nearnullspaceConstructors[field] = nullsp; 18563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1857f9d4088aSMatthew G. Knepley } 1858f9d4088aSMatthew G. Knepley 18598cda7954SMatthew G. Knepley /*@C 1860bb7acecfSBarry Smith DMGetNearNullSpaceConstructor - Return the callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 18618cda7954SMatthew G. Knepley 186220f4b53cSBarry Smith Not Collective; No Fortran Support 18638cda7954SMatthew G. Knepley 18648cda7954SMatthew G. Knepley Input Parameters: 1865bb7acecfSBarry Smith + dm - The `DM` 18668cda7954SMatthew G. Knepley - field - The field number for the nullspace 18678cda7954SMatthew G. Knepley 18688cda7954SMatthew G. Knepley Output Parameter: 18698cda7954SMatthew G. Knepley . nullsp - A callback to create the near-nullspace 18708cda7954SMatthew G. Knepley 187120f4b53cSBarry Smith Calling sequence of `nullsp`: 1872bb7acecfSBarry Smith + dm - The present `DM` 1873bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1874147403d9SBarry Smith . field - The field number in dm 1875147403d9SBarry Smith - nullSpace - The nullspace for the given field 18768cda7954SMatthew G. Knepley 187749762cbcSSatish Balay Level: intermediate 187849762cbcSSatish Balay 18791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, 1880bb7acecfSBarry Smith `MatNullSpace`, `DMCreateSuperDM()` 1881147403d9SBarry Smith @*/ 1882a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1883d71ae5a4SJacob Faibussowitsch { 1884f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1885f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18864f572ea9SToby Isaac PetscAssertPointer(nullsp, 3); 18877a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1888f9d4088aSMatthew G. Knepley *nullsp = dm->nearnullspaceConstructors[field]; 18893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1890f9d4088aSMatthew G. Knepley } 1891f9d4088aSMatthew G. Knepley 18924f3b5142SJed Brown /*@C 1893bb7acecfSBarry Smith DMCreateFieldIS - Creates a set of `IS` objects with the global indices of dofs for each field defined with `DMAddField()` 18944d343eeaSMatthew G Knepley 189520f4b53cSBarry Smith Not Collective; No Fortran Support 18964d343eeaSMatthew G Knepley 18974d343eeaSMatthew G Knepley Input Parameter: 1898bb7acecfSBarry Smith . dm - the `DM` object 18994d343eeaSMatthew G Knepley 19004d343eeaSMatthew G Knepley Output Parameters: 190120f4b53cSBarry Smith + numFields - The number of fields (or `NULL` if not requested) 1902ce78bad3SBarry Smith . fieldNames - The name of each field (or `NULL` if not requested) 190320f4b53cSBarry Smith - fields - The global indices for each field (or `NULL` if not requested) 19044d343eeaSMatthew G Knepley 19054d343eeaSMatthew G Knepley Level: intermediate 19064d343eeaSMatthew G Knepley 1907bb7acecfSBarry Smith Note: 190873ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `fieldNames` should be freed with 190973ff1848SBarry Smith `PetscFree()`, every entry of `fields` should be destroyed with `ISDestroy()`, and both arrays should be freed with 1910bb7acecfSBarry Smith `PetscFree()`. 191121c9b008SJed Brown 191273ff1848SBarry Smith Developer Note: 1913bb7acecfSBarry Smith It is not clear why both this function and `DMCreateFieldDecomposition()` exist. Having two seems redundant and confusing. This function should 1914bb7acecfSBarry Smith likely be removed. 1915bb7acecfSBarry Smith 19161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1917bb7acecfSBarry Smith `DMCreateFieldDecomposition()` 19184d343eeaSMatthew G Knepley @*/ 1919ce78bad3SBarry Smith PetscErrorCode DMCreateFieldIS(DM dm, PetscInt *numFields, char ***fieldNames, IS *fields[]) 1920d71ae5a4SJacob Faibussowitsch { 192137d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 19224d343eeaSMatthew G Knepley 19234d343eeaSMatthew G Knepley PetscFunctionBegin; 19244d343eeaSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 192569ca1f37SDmitry Karpeev if (numFields) { 19264f572ea9SToby Isaac PetscAssertPointer(numFields, 2); 192769ca1f37SDmitry Karpeev *numFields = 0; 192869ca1f37SDmitry Karpeev } 192937d0c07bSMatthew G Knepley if (fieldNames) { 19304f572ea9SToby Isaac PetscAssertPointer(fieldNames, 3); 19310298fd71SBarry Smith *fieldNames = NULL; 193269ca1f37SDmitry Karpeev } 193369ca1f37SDmitry Karpeev if (fields) { 19344f572ea9SToby Isaac PetscAssertPointer(fields, 4); 19350298fd71SBarry Smith *fields = NULL; 193669ca1f37SDmitry Karpeev } 19379566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 193837d0c07bSMatthew G Knepley if (section) { 19393a544194SStefano Zampini PetscInt *fieldSizes, *fieldNc, **fieldIndices; 194037d0c07bSMatthew G Knepley PetscInt nF, f, pStart, pEnd, p; 194137d0c07bSMatthew G Knepley 19429566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 19439566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &nF)); 19449566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nF, &fieldSizes, nF, &fieldNc, nF, &fieldIndices)); 19459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd)); 194637d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 194737d0c07bSMatthew G Knepley fieldSizes[f] = 0; 19489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &fieldNc[f])); 194937d0c07bSMatthew G Knepley } 195037d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 195137d0c07bSMatthew G Knepley PetscInt gdof; 195237d0c07bSMatthew G Knepley 19539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 195437d0c07bSMatthew G Knepley if (gdof > 0) { 195537d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19563a544194SStefano Zampini PetscInt fdof, fcdof, fpdof; 195737d0c07bSMatthew G Knepley 19589566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 19603a544194SStefano Zampini fpdof = fdof - fcdof; 19613a544194SStefano Zampini if (fpdof && fpdof != fieldNc[f]) { 19623a544194SStefano Zampini /* Layout does not admit a pointwise block size */ 19633a544194SStefano Zampini fieldNc[f] = 1; 19643a544194SStefano Zampini } 19653a544194SStefano Zampini fieldSizes[f] += fpdof; 196637d0c07bSMatthew G Knepley } 196737d0c07bSMatthew G Knepley } 196837d0c07bSMatthew G Knepley } 196937d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(fieldSizes[f], &fieldIndices[f])); 197137d0c07bSMatthew G Knepley fieldSizes[f] = 0; 197237d0c07bSMatthew G Knepley } 197337d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 197437d0c07bSMatthew G Knepley PetscInt gdof, goff; 197537d0c07bSMatthew G Knepley 19769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 197737d0c07bSMatthew G Knepley if (gdof > 0) { 19789566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &goff)); 197937d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 198037d0c07bSMatthew G Knepley PetscInt fdof, fcdof, fc; 198137d0c07bSMatthew G Knepley 19829566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19839566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 1984ad540459SPierre Jolivet for (fc = 0; fc < fdof - fcdof; ++fc, ++fieldSizes[f]) fieldIndices[f][fieldSizes[f]] = goff++; 198537d0c07bSMatthew G Knepley } 198637d0c07bSMatthew G Knepley } 198737d0c07bSMatthew G Knepley } 19888865f1eaSKarl Rupp if (numFields) *numFields = nF; 198937d0c07bSMatthew G Knepley if (fieldNames) { 19909566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fieldNames)); 199137d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 199237d0c07bSMatthew G Knepley const char *fieldName; 199337d0c07bSMatthew G Knepley 19949566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 1995835f2295SStefano Zampini PetscCall(PetscStrallocpy(fieldName, &(*fieldNames)[f])); 199637d0c07bSMatthew G Knepley } 199737d0c07bSMatthew G Knepley } 199837d0c07bSMatthew G Knepley if (fields) { 19999566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fields)); 200037d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 20013a544194SStefano Zampini PetscInt bs, in[2], out[2]; 20023a544194SStefano Zampini 20039566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), fieldSizes[f], fieldIndices[f], PETSC_OWN_POINTER, &(*fields)[f])); 20043a544194SStefano Zampini in[0] = -fieldNc[f]; 20053a544194SStefano Zampini in[1] = fieldNc[f]; 2006462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 20073a544194SStefano Zampini bs = (-out[0] == out[1]) ? out[1] : 1; 20089566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize((*fields)[f], bs)); 200937d0c07bSMatthew G Knepley } 201037d0c07bSMatthew G Knepley } 20119566063dSJacob Faibussowitsch PetscCall(PetscFree3(fieldSizes, fieldNc, fieldIndices)); 2012dbbe0bcdSBarry Smith } else PetscTryTypeMethod(dm, createfieldis, numFields, fieldNames, fields); 20133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20144d343eeaSMatthew G Knepley } 20154d343eeaSMatthew G Knepley 201616621825SDmitry Karpeev /*@C 2017bb7acecfSBarry Smith DMCreateFieldDecomposition - Returns a list of `IS` objects defining a decomposition of a problem into subproblems 2018a4e35b19SJacob Faibussowitsch corresponding to different fields. 2019e7c4fc90SDmitry Karpeev 202020f4b53cSBarry Smith Not Collective; No Fortran Support 2021e7c4fc90SDmitry Karpeev 2022e7c4fc90SDmitry Karpeev Input Parameter: 2023bb7acecfSBarry Smith . dm - the `DM` object 2024e7c4fc90SDmitry Karpeev 2025e7c4fc90SDmitry Karpeev Output Parameters: 202620f4b53cSBarry Smith + len - The number of fields (or `NULL` if not requested) 202720f4b53cSBarry Smith . namelist - The name for each field (or `NULL` if not requested) 202820f4b53cSBarry Smith . islist - The global indices for each field (or `NULL` if not requested) 202920f4b53cSBarry Smith - dmlist - The `DM`s for each field subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined) 2030e7c4fc90SDmitry Karpeev 2031e7c4fc90SDmitry Karpeev Level: intermediate 2032e7c4fc90SDmitry Karpeev 2033a4e35b19SJacob Faibussowitsch Notes: 2034a4e35b19SJacob Faibussowitsch Each `IS` contains the global indices of the dofs of the corresponding field, defined by 2035a4e35b19SJacob Faibussowitsch `DMAddField()`. The optional list of `DM`s define the `DM` for each subproblem. 2036a4e35b19SJacob Faibussowitsch 2037a4e35b19SJacob Faibussowitsch The same as `DMCreateFieldIS()` but also returns a `DM` for each field. 2038a4e35b19SJacob Faibussowitsch 203973ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with 204073ff1848SBarry Smith `PetscFree()`, every entry of `islist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`, 2041bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 2042e7c4fc90SDmitry Karpeev 204360225df5SJacob Faibussowitsch Developer Notes: 2044bb7acecfSBarry Smith It is not clear why this function and `DMCreateFieldIS()` exist. Having two seems redundant and confusing. 2045bb7acecfSBarry Smith 204673ff1848SBarry Smith Unlike `DMRefine()`, `DMCoarsen()`, and `DMCreateDomainDecomposition()` this provides no mechanism to provide hooks that are called after the 204773ff1848SBarry Smith decomposition is computed. 204873ff1848SBarry Smith 204973ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMCreateFieldIS()`, `DMCreateSubDM()`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()` 2050e7c4fc90SDmitry Karpeev @*/ 2051ce78bad3SBarry Smith PetscErrorCode DMCreateFieldDecomposition(DM dm, PetscInt *len, char ***namelist, IS *islist[], DM *dmlist[]) 2052d71ae5a4SJacob Faibussowitsch { 2053e7c4fc90SDmitry Karpeev PetscFunctionBegin; 2054e7c4fc90SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 20558865f1eaSKarl Rupp if (len) { 20564f572ea9SToby Isaac PetscAssertPointer(len, 2); 20578865f1eaSKarl Rupp *len = 0; 20588865f1eaSKarl Rupp } 20598865f1eaSKarl Rupp if (namelist) { 20604f572ea9SToby Isaac PetscAssertPointer(namelist, 3); 2061ea78f98cSLisandro Dalcin *namelist = NULL; 20628865f1eaSKarl Rupp } 20638865f1eaSKarl Rupp if (islist) { 20644f572ea9SToby Isaac PetscAssertPointer(islist, 4); 2065ea78f98cSLisandro Dalcin *islist = NULL; 20668865f1eaSKarl Rupp } 20678865f1eaSKarl Rupp if (dmlist) { 20684f572ea9SToby Isaac PetscAssertPointer(dmlist, 5); 2069ea78f98cSLisandro Dalcin *dmlist = NULL; 20708865f1eaSKarl Rupp } 2071f3f0edfdSDmitry Karpeev /* 2072f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2073f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2074f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2075f3f0edfdSDmitry Karpeev */ 20767a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 207716621825SDmitry Karpeev if (!dm->ops->createfielddecomposition) { 2078435a35e8SMatthew G Knepley PetscSection section; 2079435a35e8SMatthew G Knepley PetscInt numFields, f; 2080435a35e8SMatthew G Knepley 20819566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 20829566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(section, &numFields)); 2083435a35e8SMatthew G Knepley if (section && numFields && dm->ops->createsubdm) { 2084f25d98f1SMatthew G. Knepley if (len) *len = numFields; 20859566063dSJacob Faibussowitsch if (namelist) PetscCall(PetscMalloc1(numFields, namelist)); 20869566063dSJacob Faibussowitsch if (islist) PetscCall(PetscMalloc1(numFields, islist)); 20879566063dSJacob Faibussowitsch if (dmlist) PetscCall(PetscMalloc1(numFields, dmlist)); 2088435a35e8SMatthew G Knepley for (f = 0; f < numFields; ++f) { 2089435a35e8SMatthew G Knepley const char *fieldName; 2090435a35e8SMatthew G Knepley 20919566063dSJacob Faibussowitsch PetscCall(DMCreateSubDM(dm, 1, &f, islist ? &(*islist)[f] : NULL, dmlist ? &(*dmlist)[f] : NULL)); 209203dc3394SMatthew G. Knepley if (namelist) { 20939566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 2094835f2295SStefano Zampini PetscCall(PetscStrallocpy(fieldName, &(*namelist)[f])); 2095435a35e8SMatthew G Knepley } 209603dc3394SMatthew G. Knepley } 2097435a35e8SMatthew G Knepley } else { 20989566063dSJacob Faibussowitsch PetscCall(DMCreateFieldIS(dm, len, namelist, islist)); 2099e7c4fc90SDmitry Karpeev /* By default there are no DMs associated with subproblems. */ 21000298fd71SBarry Smith if (dmlist) *dmlist = NULL; 2101e7c4fc90SDmitry Karpeev } 2102dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, createfielddecomposition, len, namelist, islist, dmlist); 21033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 210416621825SDmitry Karpeev } 210516621825SDmitry Karpeev 21065d83a8b1SBarry Smith /*@ 210720f4b53cSBarry Smith DMCreateSubDM - Returns an `IS` and `DM` encapsulating a subproblem defined by the fields passed in. 210820f4b53cSBarry Smith The fields are defined by `DMCreateFieldIS()`. 2109435a35e8SMatthew G Knepley 2110435a35e8SMatthew G Knepley Not collective 2111435a35e8SMatthew G Knepley 2112435a35e8SMatthew G Knepley Input Parameters: 2113bb7acecfSBarry Smith + dm - The `DM` object 2114bb7acecfSBarry Smith . numFields - The number of fields to select 21152adcc780SMatthew G. Knepley - fields - The field numbers of the selected fields 2116435a35e8SMatthew G Knepley 2117435a35e8SMatthew G Knepley Output Parameters: 2118b6971eaeSBarry Smith + is - The global indices for all the degrees of freedom in the new sub `DM`, use `NULL` if not needed 2119b6971eaeSBarry Smith - subdm - The `DM` for the subproblem, use `NULL` if not needed 2120435a35e8SMatthew G Knepley 212120f4b53cSBarry Smith Level: intermediate 212220f4b53cSBarry Smith 2123bb7acecfSBarry Smith Note: 2124bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 21255d3b26e6SMatthew G. Knepley 212660225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateFieldIS()`, `DMCreateFieldDecomposition()`, `DMAddField()`, `DMCreateSuperDM()`, `IS`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 2127435a35e8SMatthew G Knepley @*/ 2128d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSubDM(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm) 2129d71ae5a4SJacob Faibussowitsch { 2130435a35e8SMatthew G Knepley PetscFunctionBegin; 2131435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 21324f572ea9SToby Isaac PetscAssertPointer(fields, 3); 21334f572ea9SToby Isaac if (is) PetscAssertPointer(is, 4); 21344f572ea9SToby Isaac if (subdm) PetscAssertPointer(subdm, 5); 2135dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createsubdm, numFields, fields, is, subdm); 21363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2137435a35e8SMatthew G Knepley } 2138435a35e8SMatthew G Knepley 21392adcc780SMatthew G. Knepley /*@C 2140ce78bad3SBarry Smith DMCreateSuperDM - Returns an arrays of `IS` and a single `DM` encapsulating a superproblem defined by multiple `DM`s passed in. 21412adcc780SMatthew G. Knepley 21422adcc780SMatthew G. Knepley Not collective 21432adcc780SMatthew G. Knepley 2144d8d19677SJose E. Roman Input Parameters: 2145bb7acecfSBarry Smith + dms - The `DM` objects 2146bb7acecfSBarry Smith - n - The number of `DM`s 21472adcc780SMatthew G. Knepley 21482adcc780SMatthew G. Knepley Output Parameters: 2149ce78bad3SBarry Smith + is - The global indices for each of subproblem within the super `DM`, or `NULL`, its length is `n` 2150bb7acecfSBarry Smith - superdm - The `DM` for the superproblem 21512adcc780SMatthew G. Knepley 215220f4b53cSBarry Smith Level: intermediate 215320f4b53cSBarry Smith 2154bb7acecfSBarry Smith Note: 2155bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 21565d3b26e6SMatthew G. Knepley 215773ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateSubDM()`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`, `DMCreateDomainDecomposition()` 21582adcc780SMatthew G. Knepley @*/ 21595d83a8b1SBarry Smith PetscErrorCode DMCreateSuperDM(DM dms[], PetscInt n, IS *is[], DM *superdm) 2160d71ae5a4SJacob Faibussowitsch { 21612adcc780SMatthew G. Knepley PetscInt i; 21622adcc780SMatthew G. Knepley 21632adcc780SMatthew G. Knepley PetscFunctionBegin; 21644f572ea9SToby Isaac PetscAssertPointer(dms, 1); 2165ad540459SPierre Jolivet for (i = 0; i < n; ++i) PetscValidHeaderSpecific(dms[i], DM_CLASSID, 1); 21664f572ea9SToby Isaac if (is) PetscAssertPointer(is, 3); 21674f572ea9SToby Isaac PetscAssertPointer(superdm, 4); 2168bb7acecfSBarry Smith PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of DMs must be nonnegative: %" PetscInt_FMT, n); 2169bb7acecfSBarry Smith if (n) { 2170b9d85ea2SLisandro Dalcin DM dm = dms[0]; 217100045ab3SPierre Jolivet PetscCheck(dm->ops->createsuperdm, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No method createsuperdm for DM of type %s", ((PetscObject)dm)->type_name); 2172dbbe0bcdSBarry Smith PetscCall((*dm->ops->createsuperdm)(dms, n, is, superdm)); 21732adcc780SMatthew G. Knepley } 21743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21752adcc780SMatthew G. Knepley } 21762adcc780SMatthew G. Knepley 217716621825SDmitry Karpeev /*@C 2178a4e35b19SJacob Faibussowitsch DMCreateDomainDecomposition - Returns lists of `IS` objects defining a decomposition of a 2179a4e35b19SJacob Faibussowitsch problem into subproblems corresponding to restrictions to pairs of nested subdomains. 218016621825SDmitry Karpeev 218120f4b53cSBarry Smith Not Collective 218216621825SDmitry Karpeev 218316621825SDmitry Karpeev Input Parameter: 2184bb7acecfSBarry Smith . dm - the `DM` object 218516621825SDmitry Karpeev 218616621825SDmitry Karpeev Output Parameters: 2187ce78bad3SBarry Smith + n - The number of subproblems in the domain decomposition (or `NULL` if not requested), also the length of the four arrays below 218820f4b53cSBarry Smith . namelist - The name for each subdomain (or `NULL` if not requested) 218973ff1848SBarry Smith . innerislist - The global indices for each inner subdomain (or `NULL`, if not requested) 219073ff1848SBarry Smith . outerislist - The global indices for each outer subdomain (or `NULL`, if not requested) 219173ff1848SBarry Smith - dmlist - The `DM`s for each subdomain subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined) 219216621825SDmitry Karpeev 219316621825SDmitry Karpeev Level: intermediate 219416621825SDmitry Karpeev 219573ff1848SBarry Smith Notes: 2196a4e35b19SJacob Faibussowitsch Each `IS` contains the global indices of the dofs of the corresponding subdomains with in the 2197a4e35b19SJacob Faibussowitsch dofs of the original `DM`. The inner subdomains conceptually define a nonoverlapping 2198a4e35b19SJacob Faibussowitsch covering, while outer subdomains can overlap. 2199a4e35b19SJacob Faibussowitsch 2200a4e35b19SJacob Faibussowitsch The optional list of `DM`s define a `DM` for each subproblem. 2201a4e35b19SJacob Faibussowitsch 220273ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with 220373ff1848SBarry Smith `PetscFree()`, every entry of `innerislist` and `outerislist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`, 2204bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 220516621825SDmitry Karpeev 2206a4e35b19SJacob Faibussowitsch Developer Notes: 220720f4b53cSBarry Smith The `dmlist` is for the inner subdomains or the outer subdomains or all subdomains? 2208bb7acecfSBarry Smith 220973ff1848SBarry Smith The names are inconsistent, the hooks use `DMSubDomainHook` which is nothing like `DMCreateDomainDecomposition()` while `DMRefineHook` is used for `DMRefine()`. 221073ff1848SBarry Smith 221173ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateFieldDecomposition()`, `DMDestroy()`, `DMCreateDomainDecompositionScatters()`, `DMView()`, `DMCreateInterpolation()`, 221273ff1848SBarry Smith `DMSubDomainHookAdd()`, `DMSubDomainHookRemove()`,`DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()` 221316621825SDmitry Karpeev @*/ 2214ce78bad3SBarry Smith PetscErrorCode DMCreateDomainDecomposition(DM dm, PetscInt *n, char ***namelist, IS *innerislist[], IS *outerislist[], DM *dmlist[]) 2215d71ae5a4SJacob Faibussowitsch { 2216be081cd6SPeter Brune DMSubDomainHookLink link; 2217be081cd6SPeter Brune PetscInt i, l; 221816621825SDmitry Karpeev 221916621825SDmitry Karpeev PetscFunctionBegin; 222016621825SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 22219371c9d4SSatish Balay if (n) { 22224f572ea9SToby Isaac PetscAssertPointer(n, 2); 22239371c9d4SSatish Balay *n = 0; 22249371c9d4SSatish Balay } 22259371c9d4SSatish Balay if (namelist) { 22264f572ea9SToby Isaac PetscAssertPointer(namelist, 3); 22279371c9d4SSatish Balay *namelist = NULL; 22289371c9d4SSatish Balay } 22299371c9d4SSatish Balay if (innerislist) { 22304f572ea9SToby Isaac PetscAssertPointer(innerislist, 4); 22319371c9d4SSatish Balay *innerislist = NULL; 22329371c9d4SSatish Balay } 22339371c9d4SSatish Balay if (outerislist) { 22344f572ea9SToby Isaac PetscAssertPointer(outerislist, 5); 22359371c9d4SSatish Balay *outerislist = NULL; 22369371c9d4SSatish Balay } 22379371c9d4SSatish Balay if (dmlist) { 22384f572ea9SToby Isaac PetscAssertPointer(dmlist, 6); 22399371c9d4SSatish Balay *dmlist = NULL; 22409371c9d4SSatish Balay } 2241f3f0edfdSDmitry Karpeev /* 2242f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2243f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2244f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2245f3f0edfdSDmitry Karpeev */ 22467a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 224716621825SDmitry Karpeev if (dm->ops->createdomaindecomposition) { 2248dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createdomaindecomposition, &l, namelist, innerislist, outerislist, dmlist); 224914a18fd3SPeter Brune /* copy subdomain hooks and context over to the subdomain DMs */ 2250f891f5b9SPatrick Sanan if (dmlist && *dmlist) { 2251be081cd6SPeter Brune for (i = 0; i < l; i++) { 2252be081cd6SPeter Brune for (link = dm->subdomainhook; link; link = link->next) { 22539566063dSJacob Faibussowitsch if (link->ddhook) PetscCall((*link->ddhook)(dm, (*dmlist)[i], link->ctx)); 2254be081cd6SPeter Brune } 2255648262bbSPatrick Sanan if (dm->ctx) (*dmlist)[i]->ctx = dm->ctx; 2256e7c4fc90SDmitry Karpeev } 225714a18fd3SPeter Brune } 2258bb7acecfSBarry Smith if (n) *n = l; 225914a18fd3SPeter Brune } 22603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2261e30e807fSPeter Brune } 2262e30e807fSPeter Brune 2263e30e807fSPeter Brune /*@C 226473ff1848SBarry Smith DMCreateDomainDecompositionScatters - Returns scatters to the subdomain vectors from the global vector for subdomains created with 226573ff1848SBarry Smith `DMCreateDomainDecomposition()` 2266e30e807fSPeter Brune 226720f4b53cSBarry Smith Not Collective 2268e30e807fSPeter Brune 2269e30e807fSPeter Brune Input Parameters: 2270bb7acecfSBarry Smith + dm - the `DM` object 227173ff1848SBarry Smith . n - the number of subdomains 2272e30e807fSPeter Brune - subdms - the local subdomains 2273e30e807fSPeter Brune 2274e30e807fSPeter Brune Output Parameters: 22756b867d5aSJose E. Roman + iscat - scatter from global vector to nonoverlapping global vector entries on subdomain 2276e30e807fSPeter Brune . oscat - scatter from global vector to overlapping global vector entries on subdomain 2277e30e807fSPeter Brune - gscat - scatter from global vector to local vector on subdomain (fills in ghosts) 2278e30e807fSPeter Brune 227920f4b53cSBarry Smith Level: developer 228020f4b53cSBarry Smith 2281bb7acecfSBarry Smith Note: 2282bb7acecfSBarry Smith This is an alternative to the iis and ois arguments in `DMCreateDomainDecomposition()` that allow for the solution 2283e30e807fSPeter Brune of general nonlinear problems with overlapping subdomain methods. While merely having index sets that enable subsets 2284e30e807fSPeter Brune of the residual equations to be created is fine for linear problems, nonlinear problems require local assembly of 2285e30e807fSPeter Brune solution and residual data. 2286e30e807fSPeter Brune 228773ff1848SBarry Smith Developer Note: 2288a4e35b19SJacob Faibussowitsch Can the subdms input be anything or are they exactly the `DM` obtained from 2289a4e35b19SJacob Faibussowitsch `DMCreateDomainDecomposition()`? 2290bb7acecfSBarry Smith 22911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 2292e30e807fSPeter Brune @*/ 22935d83a8b1SBarry Smith PetscErrorCode DMCreateDomainDecompositionScatters(DM dm, PetscInt n, DM *subdms, VecScatter *iscat[], VecScatter *oscat[], VecScatter *gscat[]) 2294d71ae5a4SJacob Faibussowitsch { 2295e30e807fSPeter Brune PetscFunctionBegin; 2296e30e807fSPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 22974f572ea9SToby Isaac PetscAssertPointer(subdms, 3); 2298dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createddscatters, n, subdms, iscat, oscat, gscat); 22993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2300e7c4fc90SDmitry Karpeev } 2301e7c4fc90SDmitry Karpeev 230247c6ae99SBarry Smith /*@ 2303bb7acecfSBarry Smith DMRefine - Refines a `DM` object using a standard nonadaptive refinement of the underlying mesh 230447c6ae99SBarry Smith 230520f4b53cSBarry Smith Collective 230647c6ae99SBarry Smith 2307d8d19677SJose E. Roman Input Parameters: 2308bb7acecfSBarry Smith + dm - the `DM` object 2309bb7acecfSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`) 231047c6ae99SBarry Smith 231147c6ae99SBarry Smith Output Parameter: 231220f4b53cSBarry Smith . dmf - the refined `DM`, or `NULL` 2313ae0a1c52SMatthew G Knepley 231420f4b53cSBarry Smith Options Database Key: 2315412e9a14SMatthew G. Knepley . -dm_plex_cell_refiner <strategy> - chooses the refinement strategy, e.g. regular, tohex 2316412e9a14SMatthew G. Knepley 231747c6ae99SBarry Smith Level: developer 231847c6ae99SBarry Smith 231920f4b53cSBarry Smith Note: 232020f4b53cSBarry Smith If no refinement was done, the return value is `NULL` 232120f4b53cSBarry Smith 232273ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`, 232373ff1848SBarry Smith `DMRefineHookAdd()`, `DMRefineHookRemove()` 232447c6ae99SBarry Smith @*/ 2325d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefine(DM dm, MPI_Comm comm, DM *dmf) 2326d71ae5a4SJacob Faibussowitsch { 2327c833c3b5SJed Brown DMRefineHookLink link; 232847c6ae99SBarry Smith 232947c6ae99SBarry Smith PetscFunctionBegin; 2330732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 23319566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Refine, dm, 0, 0, 0)); 2332dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, refine, comm, dmf); 23334057135bSMatthew G Knepley if (*dmf) { 233443842a1eSJed Brown (*dmf)->ops->creatematrix = dm->ops->creatematrix; 23358865f1eaSKarl Rupp 23369566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmf)); 23378865f1eaSKarl Rupp 2338644e2e5bSBarry Smith (*dmf)->ctx = dm->ctx; 23390598a293SJed Brown (*dmf)->leveldown = dm->leveldown; 2340656b349aSBarry Smith (*dmf)->levelup = dm->levelup + 1; 23418865f1eaSKarl Rupp 23429566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmf, dm->mattype)); 2343c833c3b5SJed Brown for (link = dm->refinehook; link; link = link->next) { 23441baa6e33SBarry Smith if (link->refinehook) PetscCall((*link->refinehook)(dm, *dmf, link->ctx)); 2345c833c3b5SJed Brown } 2346c833c3b5SJed Brown } 23479566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Refine, dm, 0, 0, 0)); 23483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2349c833c3b5SJed Brown } 2350c833c3b5SJed Brown 2351bb9467b5SJed Brown /*@C 2352c833c3b5SJed Brown DMRefineHookAdd - adds a callback to be run when interpolating a nonlinear problem to a finer grid 2353c833c3b5SJed Brown 235420f4b53cSBarry Smith Logically Collective; No Fortran Support 2355c833c3b5SJed Brown 23564165533cSJose E. Roman Input Parameters: 2357bb7acecfSBarry Smith + coarse - `DM` on which to run a hook when interpolating to a finer level 2358bb7acecfSBarry Smith . refinehook - function to run when setting up the finer level 2359f826b5fcSPierre Jolivet . interphook - function to run to update data on finer levels (once per `SNESSolve()`) 236020f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2361c833c3b5SJed Brown 236220f4b53cSBarry Smith Calling sequence of `refinehook`: 2363bb7acecfSBarry Smith + coarse - coarse level `DM` 2364bb7acecfSBarry Smith . fine - fine level `DM` to interpolate problem to 2365c833c3b5SJed Brown - ctx - optional user-defined function context 2366c833c3b5SJed Brown 236720f4b53cSBarry Smith Calling sequence of `interphook`: 2368bb7acecfSBarry Smith + coarse - coarse level `DM` 2369c833c3b5SJed Brown . interp - matrix interpolating a coarse-level solution to the finer grid 2370bb7acecfSBarry Smith . fine - fine level `DM` to update 2371c833c3b5SJed Brown - ctx - optional user-defined function context 2372c833c3b5SJed Brown 2373c833c3b5SJed Brown Level: advanced 2374c833c3b5SJed Brown 2375c833c3b5SJed Brown Notes: 2376bb7acecfSBarry Smith This function is only needed if auxiliary data that is attached to the `DM`s via, for example, `PetscObjectCompose()`, needs to be 2377bb7acecfSBarry Smith passed to fine grids while grid sequencing. 2378bb7acecfSBarry Smith 2379bb7acecfSBarry Smith The actual interpolation is done when `DMInterpolate()` is called. 2380c833c3b5SJed Brown 2381c833c3b5SJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 2382c833c3b5SJed Brown 23831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2384c833c3b5SJed Brown @*/ 2385a4e35b19SJacob Faibussowitsch PetscErrorCode DMRefineHookAdd(DM coarse, PetscErrorCode (*refinehook)(DM coarse, DM fine, void *ctx), PetscErrorCode (*interphook)(DM coarse, Mat interp, DM fine, void *ctx), void *ctx) 2386d71ae5a4SJacob Faibussowitsch { 2387c833c3b5SJed Brown DMRefineHookLink link, *p; 2388c833c3b5SJed Brown 2389c833c3b5SJed Brown PetscFunctionBegin; 2390c833c3b5SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 23913d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 23923ba16761SJacob Faibussowitsch if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 23933d8e3701SJed Brown } 23949566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2395c833c3b5SJed Brown link->refinehook = refinehook; 2396c833c3b5SJed Brown link->interphook = interphook; 2397c833c3b5SJed Brown link->ctx = ctx; 23980298fd71SBarry Smith link->next = NULL; 2399c833c3b5SJed Brown *p = link; 24003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2401c833c3b5SJed Brown } 2402c833c3b5SJed Brown 24033d8e3701SJed Brown /*@C 2404bb7acecfSBarry Smith DMRefineHookRemove - remove a callback from the list of hooks, that have been set with `DMRefineHookAdd()`, to be run when interpolating 2405bb7acecfSBarry Smith a nonlinear problem to a finer grid 24063d8e3701SJed Brown 240720f4b53cSBarry Smith Logically Collective; No Fortran Support 24083d8e3701SJed Brown 24094165533cSJose E. Roman Input Parameters: 2410bb7acecfSBarry Smith + coarse - the `DM` on which to run a hook when restricting to a coarser level 2411bb7acecfSBarry Smith . refinehook - function to run when setting up a finer level 2412bb7acecfSBarry Smith . interphook - function to run to update data on finer levels 241320f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 24143d8e3701SJed Brown 24153d8e3701SJed Brown Level: advanced 24163d8e3701SJed Brown 2417bb7acecfSBarry Smith Note: 24183d8e3701SJed Brown This function does nothing if the hook is not in the list. 24193d8e3701SJed Brown 24201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `DMCoarsenHookRemove()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 24213d8e3701SJed Brown @*/ 2422d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookRemove(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx) 2423d71ae5a4SJacob Faibussowitsch { 24243d8e3701SJed Brown DMRefineHookLink link, *p; 24253d8e3701SJed Brown 24263d8e3701SJed Brown PetscFunctionBegin; 24273d8e3701SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 24283d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 24293d8e3701SJed Brown if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) { 24303d8e3701SJed Brown link = *p; 24313d8e3701SJed Brown *p = link->next; 24329566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 24333d8e3701SJed Brown break; 24343d8e3701SJed Brown } 24353d8e3701SJed Brown } 24363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24373d8e3701SJed Brown } 24383d8e3701SJed Brown 2439c833c3b5SJed Brown /*@ 2440bb7acecfSBarry Smith DMInterpolate - interpolates user-defined problem data attached to a `DM` to a finer `DM` by running hooks registered by `DMRefineHookAdd()` 2441c833c3b5SJed Brown 2442c833c3b5SJed Brown Collective if any hooks are 2443c833c3b5SJed Brown 24444165533cSJose E. Roman Input Parameters: 2445bb7acecfSBarry Smith + coarse - coarser `DM` to use as a base 2446bb7acecfSBarry Smith . interp - interpolation matrix, apply using `MatInterpolate()` 2447bb7acecfSBarry Smith - fine - finer `DM` to update 2448c833c3b5SJed Brown 2449c833c3b5SJed Brown Level: developer 2450c833c3b5SJed Brown 245173ff1848SBarry Smith Developer Note: 2452bb7acecfSBarry Smith This routine is called `DMInterpolate()` while the hook is called `DMRefineHookAdd()`. It would be better to have an 2453bb7acecfSBarry Smith an API with consistent terminology. 2454bb7acecfSBarry Smith 24551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `MatInterpolate()` 2456c833c3b5SJed Brown @*/ 2457d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolate(DM coarse, Mat interp, DM fine) 2458d71ae5a4SJacob Faibussowitsch { 2459c833c3b5SJed Brown DMRefineHookLink link; 2460c833c3b5SJed Brown 2461c833c3b5SJed Brown PetscFunctionBegin; 2462c833c3b5SJed Brown for (link = fine->refinehook; link; link = link->next) { 24631baa6e33SBarry Smith if (link->interphook) PetscCall((*link->interphook)(coarse, interp, fine, link->ctx)); 24644057135bSMatthew G Knepley } 24653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 246647c6ae99SBarry Smith } 246747c6ae99SBarry Smith 2468eb3f98d2SBarry Smith /*@ 24691f3379b2SToby Isaac DMInterpolateSolution - Interpolates a solution from a coarse mesh to a fine mesh. 24701f3379b2SToby Isaac 247120f4b53cSBarry Smith Collective 24721f3379b2SToby Isaac 24734165533cSJose E. Roman Input Parameters: 2474bb7acecfSBarry Smith + coarse - coarse `DM` 2475bb7acecfSBarry Smith . fine - fine `DM` 2476bb7acecfSBarry Smith . interp - (optional) the matrix computed by `DMCreateInterpolation()`. Implementations may not need this, but if it 2477bb7acecfSBarry Smith is available it can avoid some recomputation. If it is provided, `MatInterpolate()` will be used if 2478bb7acecfSBarry Smith the coarse `DM` does not have a specialized implementation. 24791f3379b2SToby Isaac - coarseSol - solution on the coarse mesh 24801f3379b2SToby Isaac 24814165533cSJose E. Roman Output Parameter: 24821f3379b2SToby Isaac . fineSol - the interpolation of coarseSol to the fine mesh 24831f3379b2SToby Isaac 24841f3379b2SToby Isaac Level: developer 24851f3379b2SToby Isaac 2486bb7acecfSBarry Smith Note: 2487bb7acecfSBarry Smith This function exists because the interpolation of a solution vector between meshes is not always a linear 24881f3379b2SToby Isaac map. For example, if a boundary value problem has an inhomogeneous Dirichlet boundary condition that is compressed 24891f3379b2SToby Isaac out of the solution vector. Or if interpolation is inherently a nonlinear operation, such as a method using 24901f3379b2SToby Isaac slope-limiting reconstruction. 24911f3379b2SToby Isaac 249273ff1848SBarry Smith Developer Note: 2493bb7acecfSBarry Smith This doesn't just interpolate "solutions" so its API name is questionable. 2494bb7acecfSBarry Smith 24951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMInterpolate()`, `DMCreateInterpolation()` 24961f3379b2SToby Isaac @*/ 2497d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolateSolution(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol) 2498d71ae5a4SJacob Faibussowitsch { 24991f3379b2SToby Isaac PetscErrorCode (*interpsol)(DM, DM, Mat, Vec, Vec) = NULL; 25001f3379b2SToby Isaac 25011f3379b2SToby Isaac PetscFunctionBegin; 25021f3379b2SToby Isaac PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 25031f3379b2SToby Isaac if (interp) PetscValidHeaderSpecific(interp, MAT_CLASSID, 3); 25041f3379b2SToby Isaac PetscValidHeaderSpecific(coarseSol, VEC_CLASSID, 4); 25051f3379b2SToby Isaac PetscValidHeaderSpecific(fineSol, VEC_CLASSID, 5); 25061f3379b2SToby Isaac 25079566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)coarse, "DMInterpolateSolution_C", &interpsol)); 25081f3379b2SToby Isaac if (interpsol) { 25099566063dSJacob Faibussowitsch PetscCall((*interpsol)(coarse, fine, interp, coarseSol, fineSol)); 25101f3379b2SToby Isaac } else if (interp) { 25119566063dSJacob Faibussowitsch PetscCall(MatInterpolate(interp, coarseSol, fineSol)); 251298921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)coarse), PETSC_ERR_SUP, "DM %s does not implement DMInterpolateSolution()", ((PetscObject)coarse)->type_name); 25133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25141f3379b2SToby Isaac } 25151f3379b2SToby Isaac 25161f3379b2SToby Isaac /*@ 2517bb7acecfSBarry Smith DMGetRefineLevel - Gets the number of refinements that have generated this `DM` from some initial `DM`. 2518eb3f98d2SBarry Smith 2519eb3f98d2SBarry Smith Not Collective 2520eb3f98d2SBarry Smith 2521eb3f98d2SBarry Smith Input Parameter: 2522bb7acecfSBarry Smith . dm - the `DM` object 2523eb3f98d2SBarry Smith 2524eb3f98d2SBarry Smith Output Parameter: 2525eb3f98d2SBarry Smith . level - number of refinements 2526eb3f98d2SBarry Smith 2527eb3f98d2SBarry Smith Level: developer 2528eb3f98d2SBarry Smith 2529bb7acecfSBarry Smith Note: 2530bb7acecfSBarry Smith This can be used, by example, to set the number of coarser levels associated with this `DM` for a multigrid solver. 2531bb7acecfSBarry Smith 25321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2533eb3f98d2SBarry Smith @*/ 2534d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRefineLevel(DM dm, PetscInt *level) 2535d71ae5a4SJacob Faibussowitsch { 2536eb3f98d2SBarry Smith PetscFunctionBegin; 2537eb3f98d2SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2538eb3f98d2SBarry Smith *level = dm->levelup; 25393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2540eb3f98d2SBarry Smith } 2541eb3f98d2SBarry Smith 2542fef3a512SBarry Smith /*@ 2543bb7acecfSBarry Smith DMSetRefineLevel - Sets the number of refinements that have generated this `DM`. 2544fef3a512SBarry Smith 2545fef3a512SBarry Smith Not Collective 2546fef3a512SBarry Smith 2547d8d19677SJose E. Roman Input Parameters: 2548bb7acecfSBarry Smith + dm - the `DM` object 2549fef3a512SBarry Smith - level - number of refinements 2550fef3a512SBarry Smith 2551fef3a512SBarry Smith Level: advanced 2552fef3a512SBarry Smith 255395452b02SPatrick Sanan Notes: 2554bb7acecfSBarry Smith This value is used by `PCMG` to determine how many multigrid levels to use 2555fef3a512SBarry Smith 2556bb7acecfSBarry Smith The values are usually set automatically by the process that is causing the refinements of an initial `DM` by calling this routine. 2557bb7acecfSBarry Smith 25581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRefineLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2559fef3a512SBarry Smith @*/ 2560d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRefineLevel(DM dm, PetscInt level) 2561d71ae5a4SJacob Faibussowitsch { 2562fef3a512SBarry Smith PetscFunctionBegin; 2563fef3a512SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2564fef3a512SBarry Smith dm->levelup = level; 25653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2566fef3a512SBarry Smith } 2567fef3a512SBarry Smith 2568d410b0cfSMatthew G. Knepley /*@ 2569bb7acecfSBarry Smith DMExtrude - Extrude a `DM` object from a surface 2570d410b0cfSMatthew G. Knepley 257120f4b53cSBarry Smith Collective 2572d410b0cfSMatthew G. Knepley 2573f1a722f8SMatthew G. Knepley Input Parameters: 2574bb7acecfSBarry Smith + dm - the `DM` object 2575d410b0cfSMatthew G. Knepley - layers - the number of extruded cell layers 2576d410b0cfSMatthew G. Knepley 2577d410b0cfSMatthew G. Knepley Output Parameter: 257820f4b53cSBarry Smith . dme - the extruded `DM`, or `NULL` 2579d410b0cfSMatthew G. Knepley 2580d410b0cfSMatthew G. Knepley Level: developer 2581d410b0cfSMatthew G. Knepley 258220f4b53cSBarry Smith Note: 258320f4b53cSBarry Smith If no extrusion was done, the return value is `NULL` 258420f4b53cSBarry Smith 25851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()` 2586d410b0cfSMatthew G. Knepley @*/ 2587d71ae5a4SJacob Faibussowitsch PetscErrorCode DMExtrude(DM dm, PetscInt layers, DM *dme) 2588d71ae5a4SJacob Faibussowitsch { 2589d410b0cfSMatthew G. Knepley PetscFunctionBegin; 2590d410b0cfSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2591dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, extrude, layers, dme); 2592d410b0cfSMatthew G. Knepley if (*dme) { 2593d410b0cfSMatthew G. Knepley (*dme)->ops->creatematrix = dm->ops->creatematrix; 25949566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dme)); 2595d410b0cfSMatthew G. Knepley (*dme)->ctx = dm->ctx; 25969566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dme, dm->mattype)); 2597d410b0cfSMatthew G. Knepley } 25983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2599d410b0cfSMatthew G. Knepley } 2600d410b0cfSMatthew G. Knepley 2601d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformDM_Internal(DM dm, DM *tdm) 2602d71ae5a4SJacob Faibussowitsch { 2603ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2604ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26054f572ea9SToby Isaac PetscAssertPointer(tdm, 2); 2606ca3d3a14SMatthew G. Knepley *tdm = dm->transformDM; 26073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2608ca3d3a14SMatthew G. Knepley } 2609ca3d3a14SMatthew G. Knepley 2610d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformVec_Internal(DM dm, Vec *tv) 2611d71ae5a4SJacob Faibussowitsch { 2612ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2613ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26144f572ea9SToby Isaac PetscAssertPointer(tv, 2); 2615ca3d3a14SMatthew G. Knepley *tv = dm->transform; 26163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2617ca3d3a14SMatthew G. Knepley } 2618ca3d3a14SMatthew G. Knepley 2619ca3d3a14SMatthew G. Knepley /*@ 2620bb7acecfSBarry Smith DMHasBasisTransform - Whether the `DM` employs a basis transformation from functions in global vectors to functions in local vectors 2621ca3d3a14SMatthew G. Knepley 2622ca3d3a14SMatthew G. Knepley Input Parameter: 262320f4b53cSBarry Smith . dm - The `DM` 2624ca3d3a14SMatthew G. Knepley 2625ca3d3a14SMatthew G. Knepley Output Parameter: 262620f4b53cSBarry Smith . flg - `PETSC_TRUE` if a basis transformation should be done 2627ca3d3a14SMatthew G. Knepley 2628ca3d3a14SMatthew G. Knepley Level: developer 2629ca3d3a14SMatthew G. Knepley 26301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`, `DMPlexCreateBasisRotation()` 2631ca3d3a14SMatthew G. Knepley @*/ 2632d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasBasisTransform(DM dm, PetscBool *flg) 2633d71ae5a4SJacob Faibussowitsch { 2634ca3d3a14SMatthew G. Knepley Vec tv; 2635ca3d3a14SMatthew G. Knepley 2636ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2637ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26384f572ea9SToby Isaac PetscAssertPointer(flg, 2); 26399566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 2640ca3d3a14SMatthew G. Knepley *flg = tv ? PETSC_TRUE : PETSC_FALSE; 26413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2642ca3d3a14SMatthew G. Knepley } 2643ca3d3a14SMatthew G. Knepley 2644d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConstructBasisTransform_Internal(DM dm) 2645d71ae5a4SJacob Faibussowitsch { 2646ca3d3a14SMatthew G. Knepley PetscSection s, ts; 2647ca3d3a14SMatthew G. Knepley PetscScalar *ta; 2648ca3d3a14SMatthew G. Knepley PetscInt cdim, pStart, pEnd, p, Nf, f, Nc, dof; 2649ca3d3a14SMatthew G. Knepley 2650ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 26519566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 26529566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 26539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 26549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 26559566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->transformDM)); 26569566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm->transformDM, &ts)); 26579566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(ts, Nf)); 26589566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(ts, pStart, pEnd)); 2659ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26609566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(s, f, &Nc)); 2661ca3d3a14SMatthew G. Knepley /* We could start to label fields by their transformation properties */ 2662ca3d3a14SMatthew G. Knepley if (Nc != cdim) continue; 2663ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 26649566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, p, f, &dof)); 2665ca3d3a14SMatthew G. Knepley if (!dof) continue; 26669566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(ts, p, f, PetscSqr(cdim))); 26679566063dSJacob Faibussowitsch PetscCall(PetscSectionAddDof(ts, p, PetscSqr(cdim))); 2668ca3d3a14SMatthew G. Knepley } 2669ca3d3a14SMatthew G. Knepley } 26709566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(ts)); 26719566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(dm->transformDM, &dm->transform)); 26729566063dSJacob Faibussowitsch PetscCall(VecGetArray(dm->transform, &ta)); 2673ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 2674ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof)); 2676ca3d3a14SMatthew G. Knepley if (dof) { 2677ca3d3a14SMatthew G. Knepley PetscReal x[3] = {0.0, 0.0, 0.0}; 2678ca3d3a14SMatthew G. Knepley PetscScalar *tva; 2679ca3d3a14SMatthew G. Knepley const PetscScalar *A; 2680ca3d3a14SMatthew G. Knepley 2681ca3d3a14SMatthew G. Knepley /* TODO Get quadrature point for this dual basis vector for coordinate */ 26829566063dSJacob Faibussowitsch PetscCall((*dm->transformGetMatrix)(dm, x, PETSC_TRUE, &A, dm->transformCtx)); 26839566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm->transformDM, p, f, ta, (void *)&tva)); 26849566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tva, A, PetscSqr(cdim))); 2685ca3d3a14SMatthew G. Knepley } 2686ca3d3a14SMatthew G. Knepley } 2687ca3d3a14SMatthew G. Knepley } 26889566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(dm->transform, &ta)); 26893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2690ca3d3a14SMatthew G. Knepley } 2691ca3d3a14SMatthew G. Knepley 2692d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyTransform(DM dm, DM newdm) 2693d71ae5a4SJacob Faibussowitsch { 2694ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2695ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2696ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(newdm, DM_CLASSID, 2); 2697ca3d3a14SMatthew G. Knepley newdm->transformCtx = dm->transformCtx; 2698ca3d3a14SMatthew G. Knepley newdm->transformSetUp = dm->transformSetUp; 2699ca3d3a14SMatthew G. Knepley newdm->transformDestroy = NULL; 2700ca3d3a14SMatthew G. Knepley newdm->transformGetMatrix = dm->transformGetMatrix; 27019566063dSJacob Faibussowitsch if (newdm->transformSetUp) PetscCall(DMConstructBasisTransform_Internal(newdm)); 27023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2703ca3d3a14SMatthew G. Knepley } 2704ca3d3a14SMatthew G. Knepley 2705bb9467b5SJed Brown /*@C 2706bb7acecfSBarry Smith DMGlobalToLocalHookAdd - adds a callback to be run when `DMGlobalToLocal()` is called 2707baf369e7SPeter Brune 270820f4b53cSBarry Smith Logically Collective 2709baf369e7SPeter Brune 27104165533cSJose E. Roman Input Parameters: 2711bb7acecfSBarry Smith + dm - the `DM` 2712bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMGlobalToLocalBegin()` 2713bb7acecfSBarry Smith . endhook - function to run after `DMGlobalToLocalEnd()` has completed 271420f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2715baf369e7SPeter Brune 271620f4b53cSBarry Smith Calling sequence of `beginhook`: 2717a4e35b19SJacob Faibussowitsch + dm - global `DM` 2718baf369e7SPeter Brune . g - global vector 2719baf369e7SPeter Brune . mode - mode 2720baf369e7SPeter Brune . l - local vector 2721baf369e7SPeter Brune - ctx - optional user-defined function context 2722baf369e7SPeter Brune 272320f4b53cSBarry Smith Calling sequence of `endhook`: 2724a4e35b19SJacob Faibussowitsch + dm - global `DM` 2725a4e35b19SJacob Faibussowitsch . g - global vector 2726a4e35b19SJacob Faibussowitsch . mode - mode 2727a4e35b19SJacob Faibussowitsch . l - local vector 2728baf369e7SPeter Brune - ctx - optional user-defined function context 2729baf369e7SPeter Brune 2730baf369e7SPeter Brune Level: advanced 2731baf369e7SPeter Brune 2732bb7acecfSBarry Smith Note: 2733bb7acecfSBarry Smith The hook may be used to provide, for example, values that represent boundary conditions in the local vectors that do not exist on the global vector. 2734bb7acecfSBarry Smith 27351cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocal()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2736baf369e7SPeter Brune @*/ 2737a4e35b19SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), PetscErrorCode (*endhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), void *ctx) 2738d71ae5a4SJacob Faibussowitsch { 2739baf369e7SPeter Brune DMGlobalToLocalHookLink link, *p; 2740baf369e7SPeter Brune 2741baf369e7SPeter Brune PetscFunctionBegin; 2742baf369e7SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2743baf369e7SPeter Brune for (p = &dm->gtolhook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 27449566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2745baf369e7SPeter Brune link->beginhook = beginhook; 2746baf369e7SPeter Brune link->endhook = endhook; 2747baf369e7SPeter Brune link->ctx = ctx; 27480298fd71SBarry Smith link->next = NULL; 2749baf369e7SPeter Brune *p = link; 27503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2751baf369e7SPeter Brune } 2752baf369e7SPeter Brune 2753d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGlobalToLocalHook_Constraints(DM dm, Vec g, InsertMode mode, Vec l, void *ctx) 2754d71ae5a4SJacob Faibussowitsch { 27554c274da1SToby Isaac Mat cMat; 275679769bd5SJed Brown Vec cVec, cBias; 27574c274da1SToby Isaac PetscSection section, cSec; 27584c274da1SToby Isaac PetscInt pStart, pEnd, p, dof; 27594c274da1SToby Isaac 27604c274da1SToby Isaac PetscFunctionBegin; 2761a4e35b19SJacob Faibussowitsch (void)g; 2762a4e35b19SJacob Faibussowitsch (void)ctx; 27634c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 27649566063dSJacob Faibussowitsch PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, &cBias)); 27654c274da1SToby Isaac if (cMat && (mode == INSERT_VALUES || mode == INSERT_ALL_VALUES || mode == INSERT_BC_VALUES)) { 27665db9a05bSToby Isaac PetscInt nRows; 27675db9a05bSToby Isaac 27689566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 27693ba16761SJacob Faibussowitsch if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS); 27709566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 27719566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 27729566063dSJacob Faibussowitsch PetscCall(MatMult(cMat, l, cVec)); 27739566063dSJacob Faibussowitsch if (cBias) PetscCall(VecAXPY(cVec, 1., cBias)); 27749566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 27754c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 27769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 27774c274da1SToby Isaac if (dof) { 27784c274da1SToby Isaac PetscScalar *vals; 27799566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(cVec, cSec, p, &vals)); 27809566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(l, section, p, vals, INSERT_ALL_VALUES)); 27814c274da1SToby Isaac } 27824c274da1SToby Isaac } 27839566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 27844c274da1SToby Isaac } 27853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27864c274da1SToby Isaac } 27874c274da1SToby Isaac 278847c6ae99SBarry Smith /*@ 278901729b5cSPatrick Sanan DMGlobalToLocal - update local vectors from global vector 279001729b5cSPatrick Sanan 279120f4b53cSBarry Smith Neighbor-wise Collective 279201729b5cSPatrick Sanan 279301729b5cSPatrick Sanan Input Parameters: 2794bb7acecfSBarry Smith + dm - the `DM` object 279501729b5cSPatrick Sanan . g - the global vector 2796bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 279701729b5cSPatrick Sanan - l - the local vector 279801729b5cSPatrick Sanan 279920f4b53cSBarry Smith Level: beginner 280020f4b53cSBarry Smith 280101729b5cSPatrick Sanan Notes: 2802bb7acecfSBarry Smith The communication involved in this update can be overlapped with computation by instead using 2803bb7acecfSBarry Smith `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()`. 2804bb7acecfSBarry Smith 2805bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 280601729b5cSPatrick Sanan 28071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocalHookAdd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, 280860225df5SJacob Faibussowitsch `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, 2809bb7acecfSBarry Smith `DMGlobalToLocalBegin()` `DMGlobalToLocalEnd()` 281001729b5cSPatrick Sanan @*/ 2811d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocal(DM dm, Vec g, InsertMode mode, Vec l) 2812d71ae5a4SJacob Faibussowitsch { 281301729b5cSPatrick Sanan PetscFunctionBegin; 28149566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, g, mode, l)); 28159566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, g, mode, l)); 28163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 281701729b5cSPatrick Sanan } 281801729b5cSPatrick Sanan 281901729b5cSPatrick Sanan /*@ 282047c6ae99SBarry Smith DMGlobalToLocalBegin - Begins updating local vectors from global vector 282147c6ae99SBarry Smith 282220f4b53cSBarry Smith Neighbor-wise Collective 282347c6ae99SBarry Smith 282447c6ae99SBarry Smith Input Parameters: 2825bb7acecfSBarry Smith + dm - the `DM` object 282647c6ae99SBarry Smith . g - the global vector 2827bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 282847c6ae99SBarry Smith - l - the local vector 282947c6ae99SBarry Smith 283001729b5cSPatrick Sanan Level: intermediate 283147c6ae99SBarry Smith 2832bb7acecfSBarry Smith Notes: 2833bb7acecfSBarry Smith The operation is completed with `DMGlobalToLocalEnd()` 2834bb7acecfSBarry Smith 2835bb7acecfSBarry Smith One can perform local computations between the `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` to overlap communication and computation 2836bb7acecfSBarry Smith 2837bb7acecfSBarry Smith `DMGlobalToLocal()` is a short form of `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` 2838bb7acecfSBarry Smith 2839bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 2840bb7acecfSBarry Smith 284160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()` 284247c6ae99SBarry Smith @*/ 2843d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 2844d71ae5a4SJacob Faibussowitsch { 28457128ae9fSMatthew G Knepley PetscSF sf; 2846baf369e7SPeter Brune DMGlobalToLocalHookLink link; 284747c6ae99SBarry Smith 284847c6ae99SBarry Smith PetscFunctionBegin; 2849171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2850baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 28511baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, g, mode, l, link->ctx)); 2852baf369e7SPeter Brune } 28539566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 28547128ae9fSMatthew G Knepley if (sf) { 2855ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2856ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2857d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 28587128ae9fSMatthew G Knepley 28597a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 28609566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 28619566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 28629566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(sf, MPIU_SCALAR, gmtype, gArray, lmtype, lArray, MPI_REPLACE)); 28639566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 28649566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 28657128ae9fSMatthew G Knepley } else { 2866fa1e479aSStefano Zampini PetscUseTypeMethod(dm, globaltolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 28677128ae9fSMatthew G Knepley } 28683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 286947c6ae99SBarry Smith } 287047c6ae99SBarry Smith 287147c6ae99SBarry Smith /*@ 287247c6ae99SBarry Smith DMGlobalToLocalEnd - Ends updating local vectors from global vector 287347c6ae99SBarry Smith 287420f4b53cSBarry Smith Neighbor-wise Collective 287547c6ae99SBarry Smith 287647c6ae99SBarry Smith Input Parameters: 2877bb7acecfSBarry Smith + dm - the `DM` object 287847c6ae99SBarry Smith . g - the global vector 2879bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 288047c6ae99SBarry Smith - l - the local vector 288147c6ae99SBarry Smith 288201729b5cSPatrick Sanan Level: intermediate 288347c6ae99SBarry Smith 2884bb7acecfSBarry Smith Note: 2885bb7acecfSBarry Smith See `DMGlobalToLocalBegin()` for details. 2886bb7acecfSBarry Smith 288760225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()` 288847c6ae99SBarry Smith @*/ 2889d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 2890d71ae5a4SJacob Faibussowitsch { 28917128ae9fSMatthew G Knepley PetscSF sf; 2892ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2893ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2894ca3d3a14SMatthew G. Knepley PetscBool transform; 2895baf369e7SPeter Brune DMGlobalToLocalHookLink link; 2896d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 289747c6ae99SBarry Smith 289847c6ae99SBarry Smith PetscFunctionBegin; 2899171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29009566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 29019566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 29027128ae9fSMatthew G Knepley if (sf) { 29037a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 29047128ae9fSMatthew G Knepley 29059566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 29069566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 29079566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, gArray, lArray, MPI_REPLACE)); 29089566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 29099566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 29109566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexGlobalToLocalBasis(dm, l)); 29117128ae9fSMatthew G Knepley } else { 2912fa1e479aSStefano Zampini PetscUseTypeMethod(dm, globaltolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 29137128ae9fSMatthew G Knepley } 29149566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalHook_Constraints(dm, g, mode, l, NULL)); 2915baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 29169566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 2917baf369e7SPeter Brune } 29183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 291947c6ae99SBarry Smith } 292047c6ae99SBarry Smith 2921d4d07f1eSToby Isaac /*@C 2922d4d07f1eSToby Isaac DMLocalToGlobalHookAdd - adds a callback to be run when a local to global is called 2923d4d07f1eSToby Isaac 292420f4b53cSBarry Smith Logically Collective 2925d4d07f1eSToby Isaac 29264165533cSJose E. Roman Input Parameters: 2927bb7acecfSBarry Smith + dm - the `DM` 2928bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMLocalToGlobalBegin()` 2929bb7acecfSBarry Smith . endhook - function to run after `DMLocalToGlobalEnd()` has completed 293020f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2931d4d07f1eSToby Isaac 293220f4b53cSBarry Smith Calling sequence of `beginhook`: 2933a4e35b19SJacob Faibussowitsch + global - global `DM` 2934d4d07f1eSToby Isaac . l - local vector 2935d4d07f1eSToby Isaac . mode - mode 2936d4d07f1eSToby Isaac . g - global vector 2937d4d07f1eSToby Isaac - ctx - optional user-defined function context 2938d4d07f1eSToby Isaac 293920f4b53cSBarry Smith Calling sequence of `endhook`: 2940bb7acecfSBarry Smith + global - global `DM` 2941d4d07f1eSToby Isaac . l - local vector 2942d4d07f1eSToby Isaac . mode - mode 2943d4d07f1eSToby Isaac . g - global vector 2944d4d07f1eSToby Isaac - ctx - optional user-defined function context 2945d4d07f1eSToby Isaac 2946d4d07f1eSToby Isaac Level: advanced 2947d4d07f1eSToby Isaac 29481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMRefineHookAdd()`, `DMGlobalToLocalHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2949d4d07f1eSToby Isaac @*/ 2950a4e35b19SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), PetscErrorCode (*endhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), void *ctx) 2951d71ae5a4SJacob Faibussowitsch { 2952d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, *p; 2953d4d07f1eSToby Isaac 2954d4d07f1eSToby Isaac PetscFunctionBegin; 2955d4d07f1eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2956d4d07f1eSToby Isaac for (p = &dm->ltoghook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 29579566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2958d4d07f1eSToby Isaac link->beginhook = beginhook; 2959d4d07f1eSToby Isaac link->endhook = endhook; 2960d4d07f1eSToby Isaac link->ctx = ctx; 2961d4d07f1eSToby Isaac link->next = NULL; 2962d4d07f1eSToby Isaac *p = link; 29633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2964d4d07f1eSToby Isaac } 2965d4d07f1eSToby Isaac 2966d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMLocalToGlobalHook_Constraints(DM dm, Vec l, InsertMode mode, Vec g, void *ctx) 2967d71ae5a4SJacob Faibussowitsch { 29684c274da1SToby Isaac PetscFunctionBegin; 2969a4e35b19SJacob Faibussowitsch (void)g; 2970a4e35b19SJacob Faibussowitsch (void)ctx; 29714c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29722b6b7d09SToby Isaac if (mode == ADD_VALUES || mode == ADD_ALL_VALUES || mode == ADD_BC_VALUES) { 29732b6b7d09SToby Isaac Mat cMat; 29742b6b7d09SToby Isaac Vec cVec; 29755db9a05bSToby Isaac PetscInt nRows; 29762b6b7d09SToby Isaac PetscSection section, cSec; 29772b6b7d09SToby Isaac PetscInt pStart, pEnd, p, dof; 29782b6b7d09SToby Isaac 29792b6b7d09SToby Isaac PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, NULL)); 29802b6b7d09SToby Isaac if (!cMat) PetscFunctionReturn(PETSC_SUCCESS); 29815db9a05bSToby Isaac 29829566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 29833ba16761SJacob Faibussowitsch if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS); 29849566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 29859566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 29869566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 29874c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 29889566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 29894c274da1SToby Isaac if (dof) { 29904c274da1SToby Isaac PetscInt d; 29914c274da1SToby Isaac PetscScalar *vals; 29929566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(l, section, p, &vals)); 29939566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(cVec, cSec, p, vals, mode)); 29944c274da1SToby Isaac /* for this to be the true transpose, we have to zero the values that 29954c274da1SToby Isaac * we just extracted */ 2996ad540459SPierre Jolivet for (d = 0; d < dof; d++) vals[d] = 0.; 29974c274da1SToby Isaac } 29984c274da1SToby Isaac } 29999566063dSJacob Faibussowitsch PetscCall(MatMultTransposeAdd(cMat, cVec, l, l)); 30009566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 30014c274da1SToby Isaac } 30023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30034c274da1SToby Isaac } 300401729b5cSPatrick Sanan /*@ 300501729b5cSPatrick Sanan DMLocalToGlobal - updates global vectors from local vectors 300601729b5cSPatrick Sanan 300720f4b53cSBarry Smith Neighbor-wise Collective 300801729b5cSPatrick Sanan 300901729b5cSPatrick Sanan Input Parameters: 3010bb7acecfSBarry Smith + dm - the `DM` object 301101729b5cSPatrick Sanan . l - the local vector 3012bb7acecfSBarry Smith . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 301301729b5cSPatrick Sanan - g - the global vector 301401729b5cSPatrick Sanan 301520f4b53cSBarry Smith Level: beginner 301620f4b53cSBarry Smith 301701729b5cSPatrick Sanan Notes: 301801729b5cSPatrick Sanan The communication involved in this update can be overlapped with computation by using 3019bb7acecfSBarry Smith `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()`. 302001729b5cSPatrick Sanan 3021bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 3022bb7acecfSBarry Smith 3023bb7acecfSBarry Smith `INSERT_VALUES` is not supported for `DMDA`; in that case simply compute the values directly into a global vector instead of a local one. 3024bb7acecfSBarry Smith 3025bb7acecfSBarry Smith Use `DMLocalToGlobalHookAdd()` to add additional operations that are performed on the data during the update process 302601729b5cSPatrick Sanan 30271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`, `DMLocalToGlobalHookAdd()`, `DMGlobaToLocallHookAdd()` 302801729b5cSPatrick Sanan @*/ 3029d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobal(DM dm, Vec l, InsertMode mode, Vec g) 3030d71ae5a4SJacob Faibussowitsch { 303101729b5cSPatrick Sanan PetscFunctionBegin; 30329566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, l, mode, g)); 30339566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, l, mode, g)); 30343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 303501729b5cSPatrick Sanan } 30364c274da1SToby Isaac 303747c6ae99SBarry Smith /*@ 303801729b5cSPatrick Sanan DMLocalToGlobalBegin - begins updating global vectors from local vectors 30399a42bb27SBarry Smith 304020f4b53cSBarry Smith Neighbor-wise Collective 30419a42bb27SBarry Smith 30429a42bb27SBarry Smith Input Parameters: 3043bb7acecfSBarry Smith + dm - the `DM` object 3044f6813fd5SJed Brown . l - the local vector 3045aa624791SPierre Jolivet . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 30461eb28f2eSBarry Smith - g - the global vector 30479a42bb27SBarry Smith 304820f4b53cSBarry Smith Level: intermediate 304920f4b53cSBarry Smith 305095452b02SPatrick Sanan Notes: 3051bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 3052bb7acecfSBarry Smith 3053bb7acecfSBarry Smith `INSERT_VALUES is` not supported for `DMDA`, in that case simply compute the values directly into a global vector instead of a local one. 3054bb7acecfSBarry Smith 3055bb7acecfSBarry Smith Use `DMLocalToGlobalEnd()` to complete the communication process. 3056bb7acecfSBarry Smith 3057bb7acecfSBarry Smith `DMLocalToGlobal()` is a short form of `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()` 3058bb7acecfSBarry Smith 3059bb7acecfSBarry Smith `DMLocalToGlobalHookAdd()` may be used to provide additional operations that are performed during the update process. 30609a42bb27SBarry Smith 30611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()` 30629a42bb27SBarry Smith @*/ 3063d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalBegin(DM dm, Vec l, InsertMode mode, Vec g) 3064d71ae5a4SJacob Faibussowitsch { 30657128ae9fSMatthew G Knepley PetscSF sf; 306684330215SMatthew G. Knepley PetscSection s, gs; 3067d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3068ca3d3a14SMatthew G. Knepley Vec tmpl; 3069ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3070ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3071fa88e482SJed Brown PetscBool isInsert, transform, l_inplace = PETSC_FALSE, g_inplace = PETSC_FALSE; 3072d0295fc0SJunchao Zhang PetscMemType lmtype = PETSC_MEMTYPE_HOST, gmtype = PETSC_MEMTYPE_HOST; 30739a42bb27SBarry Smith 30749a42bb27SBarry Smith PetscFunctionBegin; 3075171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3076d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 30771baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, l, mode, g, link->ctx)); 3078d4d07f1eSToby Isaac } 30799566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalHook_Constraints(dm, l, mode, g, NULL)); 30809566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 30819566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 30827128ae9fSMatthew G Knepley switch (mode) { 30837128ae9fSMatthew G Knepley case INSERT_VALUES: 30847128ae9fSMatthew G Knepley case INSERT_ALL_VALUES: 3085d71ae5a4SJacob Faibussowitsch case INSERT_BC_VALUES: 3086d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3087d71ae5a4SJacob Faibussowitsch break; 30887128ae9fSMatthew G Knepley case ADD_VALUES: 30897128ae9fSMatthew G Knepley case ADD_ALL_VALUES: 3090d71ae5a4SJacob Faibussowitsch case ADD_BC_VALUES: 3091d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3092d71ae5a4SJacob Faibussowitsch break; 3093d71ae5a4SJacob Faibussowitsch default: 3094d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 30957128ae9fSMatthew G Knepley } 3096ca3d3a14SMatthew G. Knepley if ((sf && !isInsert) || (s && isInsert)) { 30979566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3098ca3d3a14SMatthew G. Knepley if (transform) { 30999566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 31009566063dSJacob Faibussowitsch PetscCall(VecCopy(l, tmpl)); 31019566063dSJacob Faibussowitsch PetscCall(DMPlexLocalToGlobalBasis(dm, tmpl)); 31029566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3103fa88e482SJed Brown } else if (isInsert) { 31049566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l, &lArray)); 3105fa88e482SJed Brown } else { 31069566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, &lmtype)); 3107fa88e482SJed Brown l_inplace = PETSC_TRUE; 3108ca3d3a14SMatthew G. Knepley } 3109fa88e482SJed Brown if (s && isInsert) { 31109566063dSJacob Faibussowitsch PetscCall(VecGetArray(g, &gArray)); 3111fa88e482SJed Brown } else { 31129566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, &gmtype)); 3113fa88e482SJed Brown g_inplace = PETSC_TRUE; 3114fa88e482SJed Brown } 3115ca3d3a14SMatthew G. Knepley if (sf && !isInsert) { 31169566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(sf, MPIU_SCALAR, lmtype, lArray, gmtype, gArray, MPIU_SUM)); 311784330215SMatthew G. Knepley } else if (s && isInsert) { 311884330215SMatthew G. Knepley PetscInt gStart, pStart, pEnd, p; 311984330215SMatthew G. Knepley 31209566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gs)); 31219566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 31229566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(g, &gStart, NULL)); 312384330215SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 3124b3b16f48SMatthew G. Knepley PetscInt dof, gdof, cdof, gcdof, off, goff, d, e; 312584330215SMatthew G. Knepley 31269566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s, p, &dof)); 31279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(gs, p, &gdof)); 31289566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s, p, &cdof)); 31299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(gs, p, &gcdof)); 31309566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(s, p, &off)); 31319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(gs, p, &goff)); 3132b3b16f48SMatthew G. Knepley /* Ignore off-process data and points with no global data */ 313303442857SMatthew G. Knepley if (!gdof || goff < 0) continue; 31347a8be351SBarry Smith PetscCheck(dof == gdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 3135b3b16f48SMatthew G. Knepley /* If no constraints are enforced in the global vector */ 3136b3b16f48SMatthew G. Knepley if (!gcdof) { 313784330215SMatthew G. Knepley for (d = 0; d < dof; ++d) gArray[goff - gStart + d] = lArray[off + d]; 3138b3b16f48SMatthew G. Knepley /* If constraints are enforced in the global vector */ 3139b3b16f48SMatthew G. Knepley } else if (cdof == gcdof) { 314084330215SMatthew G. Knepley const PetscInt *cdofs; 314184330215SMatthew G. Knepley PetscInt cind = 0; 314284330215SMatthew G. Knepley 31439566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(s, p, &cdofs)); 3144b3b16f48SMatthew G. Knepley for (d = 0, e = 0; d < dof; ++d) { 31459371c9d4SSatish Balay if ((cind < cdof) && (d == cdofs[cind])) { 31469371c9d4SSatish Balay ++cind; 31479371c9d4SSatish Balay continue; 31489371c9d4SSatish Balay } 3149b3b16f48SMatthew G. Knepley gArray[goff - gStart + e++] = lArray[off + d]; 315084330215SMatthew G. Knepley } 31517a8be351SBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 315284330215SMatthew G. Knepley } 3153ca3d3a14SMatthew G. Knepley } 3154fa88e482SJed Brown if (g_inplace) { 31559566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 3156fa88e482SJed Brown } else { 31579566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(g, &gArray)); 3158fa88e482SJed Brown } 3159ca3d3a14SMatthew G. Knepley if (transform) { 31609566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 31619566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3162fa88e482SJed Brown } else if (l_inplace) { 31639566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3164ca3d3a14SMatthew G. Knepley } else { 31659566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l, &lArray)); 3166ca3d3a14SMatthew G. Knepley } 31677128ae9fSMatthew G Knepley } else { 3168fa1e479aSStefano Zampini PetscUseTypeMethod(dm, localtoglobalbegin, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g); 31697128ae9fSMatthew G Knepley } 31703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31719a42bb27SBarry Smith } 31729a42bb27SBarry Smith 31739a42bb27SBarry Smith /*@ 31749a42bb27SBarry Smith DMLocalToGlobalEnd - updates global vectors from local vectors 317547c6ae99SBarry Smith 317620f4b53cSBarry Smith Neighbor-wise Collective 317747c6ae99SBarry Smith 317847c6ae99SBarry Smith Input Parameters: 3179bb7acecfSBarry Smith + dm - the `DM` object 3180f6813fd5SJed Brown . l - the local vector 3181bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 3182f6813fd5SJed Brown - g - the global vector 318347c6ae99SBarry Smith 318401729b5cSPatrick Sanan Level: intermediate 318547c6ae99SBarry Smith 3186bb7acecfSBarry Smith Note: 3187bb7acecfSBarry Smith See `DMLocalToGlobalBegin()` for full details 3188bb7acecfSBarry Smith 318960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()` 319047c6ae99SBarry Smith @*/ 3191d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalEnd(DM dm, Vec l, InsertMode mode, Vec g) 3192d71ae5a4SJacob Faibussowitsch { 31937128ae9fSMatthew G Knepley PetscSF sf; 319484330215SMatthew G. Knepley PetscSection s; 3195d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3196ca3d3a14SMatthew G. Knepley PetscBool isInsert, transform; 319747c6ae99SBarry Smith 319847c6ae99SBarry Smith PetscFunctionBegin; 3199171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32009566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 32019566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 32027128ae9fSMatthew G Knepley switch (mode) { 32037128ae9fSMatthew G Knepley case INSERT_VALUES: 3204d71ae5a4SJacob Faibussowitsch case INSERT_ALL_VALUES: 3205d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3206d71ae5a4SJacob Faibussowitsch break; 32077128ae9fSMatthew G Knepley case ADD_VALUES: 3208d71ae5a4SJacob Faibussowitsch case ADD_ALL_VALUES: 3209d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3210d71ae5a4SJacob Faibussowitsch break; 3211d71ae5a4SJacob Faibussowitsch default: 3212d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 32137128ae9fSMatthew G Knepley } 321484330215SMatthew G. Knepley if (sf && !isInsert) { 3215ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3216ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3217ca3d3a14SMatthew G. Knepley Vec tmpl; 321884330215SMatthew G. Knepley 32199566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3220ca3d3a14SMatthew G. Knepley if (transform) { 32219566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 32229566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3223ca3d3a14SMatthew G. Knepley } else { 32249566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, NULL)); 3225ca3d3a14SMatthew G. Knepley } 32269566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, NULL)); 32279566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_SCALAR, lArray, gArray, MPIU_SUM)); 3228ca3d3a14SMatthew G. Knepley if (transform) { 32299566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 32309566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3231ca3d3a14SMatthew G. Knepley } else { 32329566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3233ca3d3a14SMatthew G. Knepley } 32349566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 323584330215SMatthew G. Knepley } else if (s && isInsert) { 32367128ae9fSMatthew G Knepley } else { 3237fa1e479aSStefano Zampini PetscUseTypeMethod(dm, localtoglobalend, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g); 32387128ae9fSMatthew G Knepley } 3239d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 32409566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 3241d4d07f1eSToby Isaac } 32423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 324347c6ae99SBarry Smith } 324447c6ae99SBarry Smith 3245f089877aSRichard Tran Mills /*@ 3246a4e35b19SJacob Faibussowitsch DMLocalToLocalBegin - Begins the process of mapping values from a local vector (that include 3247a4e35b19SJacob Faibussowitsch ghost points that contain irrelevant values) to another local vector where the ghost points 3248a4e35b19SJacob Faibussowitsch in the second are set correctly from values on other MPI ranks. 3249f089877aSRichard Tran Mills 325020f4b53cSBarry Smith Neighbor-wise Collective 3251f089877aSRichard Tran Mills 3252f089877aSRichard Tran Mills Input Parameters: 3253bb7acecfSBarry Smith + dm - the `DM` object 3254bc0a1609SRichard Tran Mills . g - the original local vector 3255bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3256f089877aSRichard Tran Mills 3257bc0a1609SRichard Tran Mills Output Parameter: 3258bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3259f089877aSRichard Tran Mills 3260f089877aSRichard Tran Mills Level: intermediate 3261f089877aSRichard Tran Mills 326273ff1848SBarry Smith Note: 3263a4e35b19SJacob Faibussowitsch Must be followed by `DMLocalToLocalEnd()`. 3264a4e35b19SJacob Faibussowitsch 326560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3266f089877aSRichard Tran Mills @*/ 3267d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 3268d71ae5a4SJacob Faibussowitsch { 3269f089877aSRichard Tran Mills PetscFunctionBegin; 3270f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32719f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 32729f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 32739f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 32743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3275f089877aSRichard Tran Mills } 3276f089877aSRichard Tran Mills 3277f089877aSRichard Tran Mills /*@ 3278bb7acecfSBarry Smith DMLocalToLocalEnd - Maps from a local vector to another local vector where the ghost 3279bb7acecfSBarry Smith points in the second are set correctly. Must be preceded by `DMLocalToLocalBegin()`. 3280f089877aSRichard Tran Mills 328120f4b53cSBarry Smith Neighbor-wise Collective 3282f089877aSRichard Tran Mills 3283f089877aSRichard Tran Mills Input Parameters: 328460225df5SJacob Faibussowitsch + dm - the `DM` object 3285bc0a1609SRichard Tran Mills . g - the original local vector 3286bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3287f089877aSRichard Tran Mills 3288bc0a1609SRichard Tran Mills Output Parameter: 3289bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3290f089877aSRichard Tran Mills 3291f089877aSRichard Tran Mills Level: intermediate 3292f089877aSRichard Tran Mills 329360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3294f089877aSRichard Tran Mills @*/ 3295d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 3296d71ae5a4SJacob Faibussowitsch { 3297f089877aSRichard Tran Mills PetscFunctionBegin; 3298f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32999f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 33009f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 33019f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 33023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3303f089877aSRichard Tran Mills } 3304f089877aSRichard Tran Mills 330547c6ae99SBarry Smith /*@ 3306bb7acecfSBarry Smith DMCoarsen - Coarsens a `DM` object using a standard, non-adaptive coarsening of the underlying mesh 330747c6ae99SBarry Smith 330820f4b53cSBarry Smith Collective 330947c6ae99SBarry Smith 3310d8d19677SJose E. Roman Input Parameters: 3311bb7acecfSBarry Smith + dm - the `DM` object 331220f4b53cSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`) 331347c6ae99SBarry Smith 331447c6ae99SBarry Smith Output Parameter: 3315bb7acecfSBarry Smith . dmc - the coarsened `DM` 331647c6ae99SBarry Smith 331747c6ae99SBarry Smith Level: developer 331847c6ae99SBarry Smith 331973ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`, 332073ff1848SBarry Smith `DMCoarsenHookAdd()`, `DMCoarsenHookRemove()` 332147c6ae99SBarry Smith @*/ 3322d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsen(DM dm, MPI_Comm comm, DM *dmc) 3323d71ae5a4SJacob Faibussowitsch { 3324b17ce1afSJed Brown DMCoarsenHookLink link; 332547c6ae99SBarry Smith 332647c6ae99SBarry Smith PetscFunctionBegin; 3327171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 33289566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Coarsen, dm, 0, 0, 0)); 3329dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, coarsen, comm, dmc); 3330b9d85ea2SLisandro Dalcin if (*dmc) { 3331a3574896SRichard Tran Mills (*dmc)->bind_below = dm->bind_below; /* Propagate this from parent DM; otherwise -dm_bind_below will be useless for multigrid cases. */ 33329566063dSJacob Faibussowitsch PetscCall(DMSetCoarseDM(dm, *dmc)); 333343842a1eSJed Brown (*dmc)->ops->creatematrix = dm->ops->creatematrix; 33349566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmc)); 3335644e2e5bSBarry Smith (*dmc)->ctx = dm->ctx; 33360598a293SJed Brown (*dmc)->levelup = dm->levelup; 3337656b349aSBarry Smith (*dmc)->leveldown = dm->leveldown + 1; 33389566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmc, dm->mattype)); 3339b17ce1afSJed Brown for (link = dm->coarsenhook; link; link = link->next) { 33409566063dSJacob Faibussowitsch if (link->coarsenhook) PetscCall((*link->coarsenhook)(dm, *dmc, link->ctx)); 3341b17ce1afSJed Brown } 3342b9d85ea2SLisandro Dalcin } 33439566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Coarsen, dm, 0, 0, 0)); 33447a8be351SBarry Smith PetscCheck(*dmc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "NULL coarse mesh produced"); 33453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3346b17ce1afSJed Brown } 3347b17ce1afSJed Brown 3348bb9467b5SJed Brown /*@C 3349b17ce1afSJed Brown DMCoarsenHookAdd - adds a callback to be run when restricting a nonlinear problem to the coarse grid 3350b17ce1afSJed Brown 335120f4b53cSBarry Smith Logically Collective; No Fortran Support 3352b17ce1afSJed Brown 33534165533cSJose E. Roman Input Parameters: 3354bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3355b17ce1afSJed Brown . coarsenhook - function to run when setting up a coarser level 3356bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels (called once per `SNESSolve()`) 335720f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3358b17ce1afSJed Brown 335920f4b53cSBarry Smith Calling sequence of `coarsenhook`: 3360bb7acecfSBarry Smith + fine - fine level `DM` 3361bb7acecfSBarry Smith . coarse - coarse level `DM` to restrict problem to 3362b17ce1afSJed Brown - ctx - optional user-defined function context 3363b17ce1afSJed Brown 336420f4b53cSBarry Smith Calling sequence of `restricthook`: 3365bb7acecfSBarry Smith + fine - fine level `DM` 3366bb7acecfSBarry Smith . mrestrict - matrix restricting a fine-level solution to the coarse grid, usually the transpose of the interpolation 3367c833c3b5SJed Brown . rscale - scaling vector for restriction 3368c833c3b5SJed Brown . inject - matrix restricting by injection 3369b17ce1afSJed Brown . coarse - coarse level DM to update 3370b17ce1afSJed Brown - ctx - optional user-defined function context 3371b17ce1afSJed Brown 3372b17ce1afSJed Brown Level: advanced 3373b17ce1afSJed Brown 3374b17ce1afSJed Brown Notes: 3375bb7acecfSBarry Smith This function is only needed if auxiliary data, attached to the `DM` with `PetscObjectCompose()`, needs to be set up or passed from the fine `DM` to the coarse `DM`. 3376b17ce1afSJed Brown 3377b17ce1afSJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 3378b17ce1afSJed Brown 3379b17ce1afSJed Brown In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3380bb7acecfSBarry Smith extract the finest level information from its context (instead of from the `SNES`). 3381b17ce1afSJed Brown 3382bb7acecfSBarry Smith The hooks are automatically called by `DMRestrict()` 3383bb7acecfSBarry Smith 33841cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3385b17ce1afSJed Brown @*/ 3386a4e35b19SJacob Faibussowitsch PetscErrorCode DMCoarsenHookAdd(DM fine, PetscErrorCode (*coarsenhook)(DM fine, DM coarse, void *ctx), PetscErrorCode (*restricthook)(DM fine, Mat mrestrict, Vec rscale, Mat inject, DM coarse, void *ctx), void *ctx) 3387d71ae5a4SJacob Faibussowitsch { 3388b17ce1afSJed Brown DMCoarsenHookLink link, *p; 3389b17ce1afSJed Brown 3390b17ce1afSJed Brown PetscFunctionBegin; 3391b17ce1afSJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 33921e3d8eccSJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 33933ba16761SJacob Faibussowitsch if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 33941e3d8eccSJed Brown } 33959566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 3396b17ce1afSJed Brown link->coarsenhook = coarsenhook; 3397b17ce1afSJed Brown link->restricthook = restricthook; 3398b17ce1afSJed Brown link->ctx = ctx; 33990298fd71SBarry Smith link->next = NULL; 3400b17ce1afSJed Brown *p = link; 34013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3402b17ce1afSJed Brown } 3403b17ce1afSJed Brown 3404dc822a44SJed Brown /*@C 3405bb7acecfSBarry Smith DMCoarsenHookRemove - remove a callback set with `DMCoarsenHookAdd()` 3406dc822a44SJed Brown 340720f4b53cSBarry Smith Logically Collective; No Fortran Support 3408dc822a44SJed Brown 34094165533cSJose E. Roman Input Parameters: 3410bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3411dc822a44SJed Brown . coarsenhook - function to run when setting up a coarser level 3412bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels 341320f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3414dc822a44SJed Brown 3415dc822a44SJed Brown Level: advanced 3416dc822a44SJed Brown 341773ff1848SBarry Smith Notes: 341873ff1848SBarry Smith This function does nothing if the `coarsenhook` is not in the list. 341973ff1848SBarry Smith 342073ff1848SBarry Smith See `DMCoarsenHookAdd()` for the calling sequence of `coarsenhook` and `restricthook` 3421dc822a44SJed Brown 34221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3423dc822a44SJed Brown @*/ 3424d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookRemove(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx) 3425d71ae5a4SJacob Faibussowitsch { 3426dc822a44SJed Brown DMCoarsenHookLink link, *p; 3427dc822a44SJed Brown 3428dc822a44SJed Brown PetscFunctionBegin; 3429dc822a44SJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 3430dc822a44SJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3431dc822a44SJed Brown if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3432dc822a44SJed Brown link = *p; 3433dc822a44SJed Brown *p = link->next; 34349566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3435dc822a44SJed Brown break; 3436dc822a44SJed Brown } 3437dc822a44SJed Brown } 34383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3439dc822a44SJed Brown } 3440dc822a44SJed Brown 3441b17ce1afSJed Brown /*@ 3442bb7acecfSBarry Smith DMRestrict - restricts user-defined problem data to a coarser `DM` by running hooks registered by `DMCoarsenHookAdd()` 3443b17ce1afSJed Brown 3444b17ce1afSJed Brown Collective if any hooks are 3445b17ce1afSJed Brown 34464165533cSJose E. Roman Input Parameters: 3447bb7acecfSBarry Smith + fine - finer `DM` from which the data is obtained 3448bb7acecfSBarry Smith . restrct - restriction matrix, apply using `MatRestrict()`, usually the transpose of the interpolation 3449e91eccc2SStefano Zampini . rscale - scaling vector for restriction 3450bb7acecfSBarry Smith . inject - injection matrix, also use `MatRestrict()` 345120f4b53cSBarry Smith - coarse - coarser `DM` to update 3452b17ce1afSJed Brown 3453b17ce1afSJed Brown Level: developer 3454b17ce1afSJed Brown 345573ff1848SBarry Smith Developer Note: 3456bb7acecfSBarry Smith Though this routine is called `DMRestrict()` the hooks are added with `DMCoarsenHookAdd()`, a consistent terminology would be better 3457bb7acecfSBarry Smith 34581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMInterpolate()`, `DMRefineHookAdd()` 3459b17ce1afSJed Brown @*/ 3460d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestrict(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse) 3461d71ae5a4SJacob Faibussowitsch { 3462b17ce1afSJed Brown DMCoarsenHookLink link; 3463b17ce1afSJed Brown 3464b17ce1afSJed Brown PetscFunctionBegin; 3465b17ce1afSJed Brown for (link = fine->coarsenhook; link; link = link->next) { 34661baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(fine, restrct, rscale, inject, coarse, link->ctx)); 3467b17ce1afSJed Brown } 34683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 346947c6ae99SBarry Smith } 347047c6ae99SBarry Smith 3471bb9467b5SJed Brown /*@C 347273ff1848SBarry Smith DMSubDomainHookAdd - adds a callback to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()` 34735dbd56e3SPeter Brune 347420f4b53cSBarry Smith Logically Collective; No Fortran Support 34755dbd56e3SPeter Brune 34764165533cSJose E. Roman Input Parameters: 3477bb7acecfSBarry Smith + global - global `DM` 3478bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 34795dbd56e3SPeter Brune . restricthook - function to run to update data on block solve (at the beginning of the block solve) 348020f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 34815dbd56e3SPeter Brune 348220f4b53cSBarry Smith Calling sequence of `ddhook`: 3483bb7acecfSBarry Smith + global - global `DM` 348473ff1848SBarry Smith . block - subdomain `DM` 3485ec4806b8SPeter Brune - ctx - optional user-defined function context 3486ec4806b8SPeter Brune 348720f4b53cSBarry Smith Calling sequence of `restricthook`: 3488bb7acecfSBarry Smith + global - global `DM` 348973ff1848SBarry Smith . out - scatter to the outer (with ghost and overlap points) sub vector 349073ff1848SBarry Smith . in - scatter to sub vector values only owned locally 349173ff1848SBarry Smith . block - subdomain `DM` 34925dbd56e3SPeter Brune - ctx - optional user-defined function context 34935dbd56e3SPeter Brune 34945dbd56e3SPeter Brune Level: advanced 34955dbd56e3SPeter Brune 34965dbd56e3SPeter Brune Notes: 349773ff1848SBarry Smith This function can be used if auxiliary data needs to be set up on subdomain `DM`s. 34985dbd56e3SPeter Brune 34995dbd56e3SPeter Brune If this function is called multiple times, the hooks will be run in the order they are added. 35005dbd56e3SPeter Brune 35015dbd56e3SPeter Brune In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3502bb7acecfSBarry Smith extract the global information from its context (instead of from the `SNES`). 35035dbd56e3SPeter Brune 350473ff1848SBarry Smith Developer Note: 350573ff1848SBarry Smith It is unclear what "block solve" means within the definition of `restricthook` 350673ff1848SBarry Smith 350773ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`, `DMCreateDomainDecomposition()` 35085dbd56e3SPeter Brune @*/ 3509a4e35b19SJacob Faibussowitsch PetscErrorCode DMSubDomainHookAdd(DM global, PetscErrorCode (*ddhook)(DM global, DM block, void *ctx), PetscErrorCode (*restricthook)(DM global, VecScatter out, VecScatter in, DM block, void *ctx), void *ctx) 3510d71ae5a4SJacob Faibussowitsch { 3511be081cd6SPeter Brune DMSubDomainHookLink link, *p; 35125dbd56e3SPeter Brune 35135dbd56e3SPeter Brune PetscFunctionBegin; 35145dbd56e3SPeter Brune PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3515b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 35163ba16761SJacob Faibussowitsch if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 3517b3a6b972SJed Brown } 35189566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 35195dbd56e3SPeter Brune link->restricthook = restricthook; 3520be081cd6SPeter Brune link->ddhook = ddhook; 35215dbd56e3SPeter Brune link->ctx = ctx; 35220298fd71SBarry Smith link->next = NULL; 35235dbd56e3SPeter Brune *p = link; 35243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35255dbd56e3SPeter Brune } 35265dbd56e3SPeter Brune 3527b3a6b972SJed Brown /*@C 352873ff1848SBarry Smith DMSubDomainHookRemove - remove a callback from the list to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()` 3529b3a6b972SJed Brown 353020f4b53cSBarry Smith Logically Collective; No Fortran Support 3531b3a6b972SJed Brown 35324165533cSJose E. Roman Input Parameters: 3533bb7acecfSBarry Smith + global - global `DM` 3534bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 3535b3a6b972SJed Brown . restricthook - function to run to update data on block solve (at the beginning of the block solve) 353620f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3537b3a6b972SJed Brown 3538b3a6b972SJed Brown Level: advanced 3539b3a6b972SJed Brown 354073ff1848SBarry Smith Note: 354173ff1848SBarry Smith See `DMSubDomainHookAdd()` for the calling sequences of `ddhook` and `restricthook` 354273ff1848SBarry Smith 354373ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`, 354473ff1848SBarry Smith `DMCreateDomainDecomposition()` 3545b3a6b972SJed Brown @*/ 3546d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookRemove(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx) 3547d71ae5a4SJacob Faibussowitsch { 3548b3a6b972SJed Brown DMSubDomainHookLink link, *p; 3549b3a6b972SJed Brown 3550b3a6b972SJed Brown PetscFunctionBegin; 3551b3a6b972SJed Brown PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3552b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3553b3a6b972SJed Brown if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3554b3a6b972SJed Brown link = *p; 3555b3a6b972SJed Brown *p = link->next; 35569566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3557b3a6b972SJed Brown break; 3558b3a6b972SJed Brown } 3559b3a6b972SJed Brown } 35603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3561b3a6b972SJed Brown } 3562b3a6b972SJed Brown 35635dbd56e3SPeter Brune /*@ 356473ff1848SBarry Smith DMSubDomainRestrict - restricts user-defined problem data to a subdomain `DM` by running hooks registered by `DMSubDomainHookAdd()` 35655dbd56e3SPeter Brune 35665dbd56e3SPeter Brune Collective if any hooks are 35675dbd56e3SPeter Brune 35684165533cSJose E. Roman Input Parameters: 3569a4e35b19SJacob Faibussowitsch + global - The global `DM` to use as a base 3570a4e35b19SJacob Faibussowitsch . oscatter - The scatter from domain global vector filling subdomain global vector with overlap 3571a4e35b19SJacob Faibussowitsch . gscatter - The scatter from domain global vector filling subdomain local vector with ghosts 3572a4e35b19SJacob Faibussowitsch - subdm - The subdomain `DM` to update 35735dbd56e3SPeter Brune 35745dbd56e3SPeter Brune Level: developer 35755dbd56e3SPeter Brune 357673ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMCreateDomainDecomposition()` 35775dbd56e3SPeter Brune @*/ 3578d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainRestrict(DM global, VecScatter oscatter, VecScatter gscatter, DM subdm) 3579d71ae5a4SJacob Faibussowitsch { 3580be081cd6SPeter Brune DMSubDomainHookLink link; 35815dbd56e3SPeter Brune 35825dbd56e3SPeter Brune PetscFunctionBegin; 3583be081cd6SPeter Brune for (link = global->subdomainhook; link; link = link->next) { 35841baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(global, oscatter, gscatter, subdm, link->ctx)); 35855dbd56e3SPeter Brune } 35863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35875dbd56e3SPeter Brune } 35885dbd56e3SPeter Brune 35895fe1f584SPeter Brune /*@ 3590bb7acecfSBarry Smith DMGetCoarsenLevel - Gets the number of coarsenings that have generated this `DM`. 35915fe1f584SPeter Brune 35925fe1f584SPeter Brune Not Collective 35935fe1f584SPeter Brune 35945fe1f584SPeter Brune Input Parameter: 3595bb7acecfSBarry Smith . dm - the `DM` object 35965fe1f584SPeter Brune 35975fe1f584SPeter Brune Output Parameter: 35986a7d9d85SPeter Brune . level - number of coarsenings 35995fe1f584SPeter Brune 36005fe1f584SPeter Brune Level: developer 36015fe1f584SPeter Brune 36021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMSetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 36035fe1f584SPeter Brune @*/ 3604d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarsenLevel(DM dm, PetscInt *level) 3605d71ae5a4SJacob Faibussowitsch { 36065fe1f584SPeter Brune PetscFunctionBegin; 36075fe1f584SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36084f572ea9SToby Isaac PetscAssertPointer(level, 2); 36095fe1f584SPeter Brune *level = dm->leveldown; 36103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36115fe1f584SPeter Brune } 36125fe1f584SPeter Brune 36139a64c4a8SMatthew G. Knepley /*@ 3614bb7acecfSBarry Smith DMSetCoarsenLevel - Sets the number of coarsenings that have generated this `DM`. 36159a64c4a8SMatthew G. Knepley 361620f4b53cSBarry Smith Collective 36179a64c4a8SMatthew G. Knepley 36189a64c4a8SMatthew G. Knepley Input Parameters: 3619bb7acecfSBarry Smith + dm - the `DM` object 36209a64c4a8SMatthew G. Knepley - level - number of coarsenings 36219a64c4a8SMatthew G. Knepley 36229a64c4a8SMatthew G. Knepley Level: developer 36239a64c4a8SMatthew G. Knepley 3624bb7acecfSBarry Smith Note: 3625bb7acecfSBarry Smith This is rarely used directly, the information is automatically set when a `DM` is created with `DMCoarsen()` 3626bb7acecfSBarry Smith 362742747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 36289a64c4a8SMatthew G. Knepley @*/ 3629d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarsenLevel(DM dm, PetscInt level) 3630d71ae5a4SJacob Faibussowitsch { 36319a64c4a8SMatthew G. Knepley PetscFunctionBegin; 36329a64c4a8SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36339a64c4a8SMatthew G. Knepley dm->leveldown = level; 36343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36359a64c4a8SMatthew G. Knepley } 36369a64c4a8SMatthew G. Knepley 3637cc4c1da9SBarry Smith /*@ 3638bb7acecfSBarry Smith DMRefineHierarchy - Refines a `DM` object, all levels at once 363947c6ae99SBarry Smith 364020f4b53cSBarry Smith Collective 364147c6ae99SBarry Smith 3642d8d19677SJose E. Roman Input Parameters: 3643bb7acecfSBarry Smith + dm - the `DM` object 364447c6ae99SBarry Smith - nlevels - the number of levels of refinement 364547c6ae99SBarry Smith 364647c6ae99SBarry Smith Output Parameter: 3647bb7acecfSBarry Smith . dmf - the refined `DM` hierarchy 364847c6ae99SBarry Smith 364947c6ae99SBarry Smith Level: developer 365047c6ae99SBarry Smith 36511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMCoarsenHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 365247c6ae99SBarry Smith @*/ 3653d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHierarchy(DM dm, PetscInt nlevels, DM dmf[]) 3654d71ae5a4SJacob Faibussowitsch { 365547c6ae99SBarry Smith PetscFunctionBegin; 3656171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36577a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 36583ba16761SJacob Faibussowitsch if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS); 36594f572ea9SToby Isaac PetscAssertPointer(dmf, 3); 3660213acdd3SPierre Jolivet if (dm->ops->refine && !dm->ops->refinehierarchy) { 366147c6ae99SBarry Smith PetscInt i; 366247c6ae99SBarry Smith 36639566063dSJacob Faibussowitsch PetscCall(DMRefine(dm, PetscObjectComm((PetscObject)dm), &dmf[0])); 366448a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMRefine(dmf[i - 1], PetscObjectComm((PetscObject)dm), &dmf[i])); 3665213acdd3SPierre Jolivet } else PetscUseTypeMethod(dm, refinehierarchy, nlevels, dmf); 36663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 366747c6ae99SBarry Smith } 366847c6ae99SBarry Smith 3669cc4c1da9SBarry Smith /*@ 3670bb7acecfSBarry Smith DMCoarsenHierarchy - Coarsens a `DM` object, all levels at once 367147c6ae99SBarry Smith 367220f4b53cSBarry Smith Collective 367347c6ae99SBarry Smith 3674d8d19677SJose E. Roman Input Parameters: 3675bb7acecfSBarry Smith + dm - the `DM` object 367647c6ae99SBarry Smith - nlevels - the number of levels of coarsening 367747c6ae99SBarry Smith 367847c6ae99SBarry Smith Output Parameter: 3679bb7acecfSBarry Smith . dmc - the coarsened `DM` hierarchy 368047c6ae99SBarry Smith 368147c6ae99SBarry Smith Level: developer 368247c6ae99SBarry Smith 36831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMRefineHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 368447c6ae99SBarry Smith @*/ 3685d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHierarchy(DM dm, PetscInt nlevels, DM dmc[]) 3686d71ae5a4SJacob Faibussowitsch { 368747c6ae99SBarry Smith PetscFunctionBegin; 3688171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36897a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 36903ba16761SJacob Faibussowitsch if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS); 36914f572ea9SToby Isaac PetscAssertPointer(dmc, 3); 3692213acdd3SPierre Jolivet if (dm->ops->coarsen && !dm->ops->coarsenhierarchy) { 369347c6ae99SBarry Smith PetscInt i; 369447c6ae99SBarry Smith 36959566063dSJacob Faibussowitsch PetscCall(DMCoarsen(dm, PetscObjectComm((PetscObject)dm), &dmc[0])); 369648a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMCoarsen(dmc[i - 1], PetscObjectComm((PetscObject)dm), &dmc[i])); 3697213acdd3SPierre Jolivet } else PetscUseTypeMethod(dm, coarsenhierarchy, nlevels, dmc); 36983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 369947c6ae99SBarry Smith } 370047c6ae99SBarry Smith 37011a266240SBarry Smith /*@C 3702bb7acecfSBarry Smith DMSetApplicationContextDestroy - Sets a user function that will be called to destroy the application context when the `DM` is destroyed 37031a266240SBarry Smith 3704bb7acecfSBarry Smith Logically Collective if the function is collective 37051a266240SBarry Smith 37061a266240SBarry Smith Input Parameters: 3707bb7acecfSBarry Smith + dm - the `DM` object 370849abdd8aSBarry Smith - destroy - the destroy function, see `PetscCtxDestroyFn` for the calling sequence 37091a266240SBarry Smith 37101a266240SBarry Smith Level: intermediate 37111a266240SBarry Smith 371249abdd8aSBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, 371349abdd8aSBarry Smith `DMGetApplicationContext()`, `PetscCtxDestroyFn` 3714f07f9ceaSJed Brown @*/ 371549abdd8aSBarry Smith PetscErrorCode DMSetApplicationContextDestroy(DM dm, PetscCtxDestroyFn *destroy) 3716d71ae5a4SJacob Faibussowitsch { 37171a266240SBarry Smith PetscFunctionBegin; 3718171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37191a266240SBarry Smith dm->ctxdestroy = destroy; 37203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 37211a266240SBarry Smith } 37221a266240SBarry Smith 3723b07ff414SBarry Smith /*@ 3724bb7acecfSBarry Smith DMSetApplicationContext - Set a user context into a `DM` object 372547c6ae99SBarry Smith 372647c6ae99SBarry Smith Not Collective 372747c6ae99SBarry Smith 372847c6ae99SBarry Smith Input Parameters: 3729bb7acecfSBarry Smith + dm - the `DM` object 373047c6ae99SBarry Smith - ctx - the user context 373147c6ae99SBarry Smith 373247c6ae99SBarry Smith Level: intermediate 373347c6ae99SBarry Smith 3734ce78bad3SBarry Smith Note: 373535cb6cd3SPierre Jolivet A user context is a way to pass problem specific information that is accessible whenever the `DM` is available 3736e33b3f0fSStefano Zampini In a multilevel solver, the user context is shared by all the `DM` in the hierarchy; it is thus not advisable 3737e33b3f0fSStefano Zampini to store objects that represent discretized quantities inside the context. 3738bb7acecfSBarry Smith 3739ce78bad3SBarry Smith Fortran Note: 3740ce78bad3SBarry Smith This only works when `ctx` is a Fortran derived type (it cannot be a `PetscObject`), we recommend writing a Fortran interface definition for this 3741ce78bad3SBarry Smith function that tells the Fortran compiler the derived data type that is passed in as the `ctx` argument. See `DMGetApplicationContext()` for 3742ce78bad3SBarry Smith an example. 3743ce78bad3SBarry Smith 374460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 374547c6ae99SBarry Smith @*/ 3746d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContext(DM dm, void *ctx) 3747d71ae5a4SJacob Faibussowitsch { 374847c6ae99SBarry Smith PetscFunctionBegin; 3749171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 375047c6ae99SBarry Smith dm->ctx = ctx; 37513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 375247c6ae99SBarry Smith } 375347c6ae99SBarry Smith 375447c6ae99SBarry Smith /*@ 3755ce78bad3SBarry Smith DMGetApplicationContext - Gets a user context from a `DM` object provided with `DMSetApplicationContext()` 375647c6ae99SBarry Smith 375747c6ae99SBarry Smith Not Collective 375847c6ae99SBarry Smith 375947c6ae99SBarry Smith Input Parameter: 3760bb7acecfSBarry Smith . dm - the `DM` object 376147c6ae99SBarry Smith 376247c6ae99SBarry Smith Output Parameter: 3763ce78bad3SBarry Smith . ctx - a pointer to the user context 376447c6ae99SBarry Smith 376547c6ae99SBarry Smith Level: intermediate 376647c6ae99SBarry Smith 3767bb7acecfSBarry Smith Note: 376835cb6cd3SPierre Jolivet A user context is a way to pass problem specific information that is accessible whenever the `DM` is available 3769bb7acecfSBarry Smith 3770ce78bad3SBarry Smith Fortran Notes: 3771ce78bad3SBarry Smith This only works when the context is a Fortran derived type (it cannot be a `PetscObject`) and you **must** write a Fortran interface definition for this 3772ce78bad3SBarry Smith function that tells the Fortran compiler the derived data type that is returned as the `ctx` argument. For example, 3773ce78bad3SBarry Smith .vb 3774ce78bad3SBarry Smith Interface DMGetApplicationContext 3775ce78bad3SBarry Smith Subroutine DMGetApplicationContext(dm,ctx,ierr) 3776ce78bad3SBarry Smith #include <petsc/finclude/petscdm.h> 3777ce78bad3SBarry Smith use petscdm 3778ce78bad3SBarry Smith DM dm 3779ce78bad3SBarry Smith type(tUsertype), pointer :: ctx 3780ce78bad3SBarry Smith PetscErrorCode ierr 3781ce78bad3SBarry Smith End Subroutine 3782ce78bad3SBarry Smith End Interface DMGetApplicationContext 3783ce78bad3SBarry Smith .ve 3784ce78bad3SBarry Smith 3785*bfe80ac4SPierre Jolivet The prototype for `ctx` must be 3786ce78bad3SBarry Smith .vb 3787ce78bad3SBarry Smith type(tUsertype), pointer :: ctx 3788ce78bad3SBarry Smith .ve 3789ce78bad3SBarry Smith 379042747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 379147c6ae99SBarry Smith @*/ 3792ce78bad3SBarry Smith PetscErrorCode DMGetApplicationContext(DM dm, PeCtx ctx) 3793d71ae5a4SJacob Faibussowitsch { 379447c6ae99SBarry Smith PetscFunctionBegin; 3795171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37961b2093e4SBarry Smith *(void **)ctx = dm->ctx; 37973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 379847c6ae99SBarry Smith } 379947c6ae99SBarry Smith 380008da532bSDmitry Karpeev /*@C 3801bb7acecfSBarry Smith DMSetVariableBounds - sets a function to compute the lower and upper bound vectors for `SNESVI`. 380208da532bSDmitry Karpeev 380320f4b53cSBarry Smith Logically Collective 380408da532bSDmitry Karpeev 3805d8d19677SJose E. Roman Input Parameters: 380608da532bSDmitry Karpeev + dm - the DM object 3807ce78bad3SBarry Smith - f - the function that computes variable bounds used by `SNESVI` (use `NULL` to cancel a previous function that was set) 380808da532bSDmitry Karpeev 380908da532bSDmitry Karpeev Level: intermediate 381008da532bSDmitry Karpeev 3811ce78bad3SBarry Smith Developer Note: 3812ce78bad3SBarry Smith Should be called `DMSetComputeVIBounds()` or something similar 3813ce78bad3SBarry Smith 38141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`, 3815db781477SPatrick Sanan `DMSetJacobian()` 381608da532bSDmitry Karpeev @*/ 3817d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVariableBounds(DM dm, PetscErrorCode (*f)(DM, Vec, Vec)) 3818d71ae5a4SJacob Faibussowitsch { 381908da532bSDmitry Karpeev PetscFunctionBegin; 38205a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 382108da532bSDmitry Karpeev dm->ops->computevariablebounds = f; 38223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 382308da532bSDmitry Karpeev } 382408da532bSDmitry Karpeev 382508da532bSDmitry Karpeev /*@ 3826bb7acecfSBarry Smith DMHasVariableBounds - does the `DM` object have a variable bounds function? 382708da532bSDmitry Karpeev 382808da532bSDmitry Karpeev Not Collective 382908da532bSDmitry Karpeev 383008da532bSDmitry Karpeev Input Parameter: 3831bb7acecfSBarry Smith . dm - the `DM` object to destroy 383208da532bSDmitry Karpeev 383308da532bSDmitry Karpeev Output Parameter: 3834bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the variable bounds function exists 383508da532bSDmitry Karpeev 383608da532bSDmitry Karpeev Level: developer 383708da532bSDmitry Karpeev 38381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 383908da532bSDmitry Karpeev @*/ 3840d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasVariableBounds(DM dm, PetscBool *flg) 3841d71ae5a4SJacob Faibussowitsch { 384208da532bSDmitry Karpeev PetscFunctionBegin; 38435a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38444f572ea9SToby Isaac PetscAssertPointer(flg, 2); 384508da532bSDmitry Karpeev *flg = (dm->ops->computevariablebounds) ? PETSC_TRUE : PETSC_FALSE; 38463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 384708da532bSDmitry Karpeev } 384808da532bSDmitry Karpeev 3849cc4c1da9SBarry Smith /*@ 3850bb7acecfSBarry Smith DMComputeVariableBounds - compute variable bounds used by `SNESVI`. 385108da532bSDmitry Karpeev 385220f4b53cSBarry Smith Logically Collective 385308da532bSDmitry Karpeev 3854f899ff85SJose E. Roman Input Parameter: 3855bb7acecfSBarry Smith . dm - the `DM` object 385608da532bSDmitry Karpeev 385760225df5SJacob Faibussowitsch Output Parameters: 385808da532bSDmitry Karpeev + xl - lower bound 385908da532bSDmitry Karpeev - xu - upper bound 386008da532bSDmitry Karpeev 3861907376e6SBarry Smith Level: advanced 3862907376e6SBarry Smith 386320f4b53cSBarry Smith Note: 386495452b02SPatrick Sanan This is generally not called by users. It calls the function provided by the user with DMSetVariableBounds() 386508da532bSDmitry Karpeev 38661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 386708da532bSDmitry Karpeev @*/ 3868d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeVariableBounds(DM dm, Vec xl, Vec xu) 3869d71ae5a4SJacob Faibussowitsch { 387008da532bSDmitry Karpeev PetscFunctionBegin; 38715a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 387208da532bSDmitry Karpeev PetscValidHeaderSpecific(xl, VEC_CLASSID, 2); 38735a84ad33SLisandro Dalcin PetscValidHeaderSpecific(xu, VEC_CLASSID, 3); 3874dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, computevariablebounds, xl, xu); 38753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 387608da532bSDmitry Karpeev } 387708da532bSDmitry Karpeev 3878b0ae01b7SPeter Brune /*@ 3879bb7acecfSBarry Smith DMHasColoring - does the `DM` object have a method of providing a coloring? 3880b0ae01b7SPeter Brune 3881b0ae01b7SPeter Brune Not Collective 3882b0ae01b7SPeter Brune 3883b0ae01b7SPeter Brune Input Parameter: 3884b0ae01b7SPeter Brune . dm - the DM object 3885b0ae01b7SPeter Brune 3886b0ae01b7SPeter Brune Output Parameter: 3887bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateColoring()`. 3888b0ae01b7SPeter Brune 3889b0ae01b7SPeter Brune Level: developer 3890b0ae01b7SPeter Brune 38911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateColoring()` 3892b0ae01b7SPeter Brune @*/ 3893d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasColoring(DM dm, PetscBool *flg) 3894d71ae5a4SJacob Faibussowitsch { 3895b0ae01b7SPeter Brune PetscFunctionBegin; 38965a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38974f572ea9SToby Isaac PetscAssertPointer(flg, 2); 3898b0ae01b7SPeter Brune *flg = (dm->ops->getcoloring) ? PETSC_TRUE : PETSC_FALSE; 38993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3900b0ae01b7SPeter Brune } 3901b0ae01b7SPeter Brune 39023ad4599aSBarry Smith /*@ 3903bb7acecfSBarry Smith DMHasCreateRestriction - does the `DM` object have a method of providing a restriction? 39043ad4599aSBarry Smith 39053ad4599aSBarry Smith Not Collective 39063ad4599aSBarry Smith 39073ad4599aSBarry Smith Input Parameter: 3908bb7acecfSBarry Smith . dm - the `DM` object 39093ad4599aSBarry Smith 39103ad4599aSBarry Smith Output Parameter: 3911bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateRestriction()`. 39123ad4599aSBarry Smith 39133ad4599aSBarry Smith Level: developer 39143ad4599aSBarry Smith 39151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateRestriction()`, `DMHasCreateInterpolation()`, `DMHasCreateInjection()` 39163ad4599aSBarry Smith @*/ 3917d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateRestriction(DM dm, PetscBool *flg) 3918d71ae5a4SJacob Faibussowitsch { 39193ad4599aSBarry Smith PetscFunctionBegin; 39205a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39214f572ea9SToby Isaac PetscAssertPointer(flg, 2); 39223ad4599aSBarry Smith *flg = (dm->ops->createrestriction) ? PETSC_TRUE : PETSC_FALSE; 39233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 39243ad4599aSBarry Smith } 39253ad4599aSBarry Smith 3926a7058e45SLawrence Mitchell /*@ 3927bb7acecfSBarry Smith DMHasCreateInjection - does the `DM` object have a method of providing an injection? 3928a7058e45SLawrence Mitchell 3929a7058e45SLawrence Mitchell Not Collective 3930a7058e45SLawrence Mitchell 3931a7058e45SLawrence Mitchell Input Parameter: 3932bb7acecfSBarry Smith . dm - the `DM` object 3933a7058e45SLawrence Mitchell 3934a7058e45SLawrence Mitchell Output Parameter: 3935bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateInjection()`. 3936a7058e45SLawrence Mitchell 3937a7058e45SLawrence Mitchell Level: developer 3938a7058e45SLawrence Mitchell 39391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateInjection()`, `DMHasCreateRestriction()`, `DMHasCreateInterpolation()` 3940a7058e45SLawrence Mitchell @*/ 3941d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateInjection(DM dm, PetscBool *flg) 3942d71ae5a4SJacob Faibussowitsch { 3943a7058e45SLawrence Mitchell PetscFunctionBegin; 39445a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39454f572ea9SToby Isaac PetscAssertPointer(flg, 2); 3946dbbe0bcdSBarry Smith if (dm->ops->hascreateinjection) PetscUseTypeMethod(dm, hascreateinjection, flg); 3947ad540459SPierre Jolivet else *flg = (dm->ops->createinjection) ? PETSC_TRUE : PETSC_FALSE; 39483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3949a7058e45SLawrence Mitchell } 3950a7058e45SLawrence Mitchell 39510298fd71SBarry Smith PetscFunctionList DMList = NULL; 3952264ace61SBarry Smith PetscBool DMRegisterAllCalled = PETSC_FALSE; 3953264ace61SBarry Smith 3954cc4c1da9SBarry Smith /*@ 3955bb7acecfSBarry Smith DMSetType - Builds a `DM`, for a particular `DM` implementation. 3956264ace61SBarry Smith 395720f4b53cSBarry Smith Collective 3958264ace61SBarry Smith 3959264ace61SBarry Smith Input Parameters: 3960bb7acecfSBarry Smith + dm - The `DM` object 3961bb7acecfSBarry Smith - method - The name of the `DMType`, for example `DMDA`, `DMPLEX` 3962264ace61SBarry Smith 3963264ace61SBarry Smith Options Database Key: 3964bb7acecfSBarry Smith . -dm_type <type> - Sets the `DM` type; use -help for a list of available types 3965264ace61SBarry Smith 3966264ace61SBarry Smith Level: intermediate 3967264ace61SBarry Smith 3968bb7acecfSBarry Smith Note: 39690462cc06SPierre Jolivet Of the `DM` is constructed by directly calling a function to construct a particular `DM`, for example, `DMDACreate2d()` or `DMPlexCreateBoxMesh()` 3970bb7acecfSBarry Smith 39711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMGetType()`, `DMCreate()`, `DMDACreate2d()` 3972264ace61SBarry Smith @*/ 3973d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetType(DM dm, DMType method) 3974d71ae5a4SJacob Faibussowitsch { 3975264ace61SBarry Smith PetscErrorCode (*r)(DM); 3976264ace61SBarry Smith PetscBool match; 3977264ace61SBarry Smith 3978264ace61SBarry Smith PetscFunctionBegin; 3979264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39809566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, method, &match)); 39813ba16761SJacob Faibussowitsch if (match) PetscFunctionReturn(PETSC_SUCCESS); 3982264ace61SBarry Smith 39839566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 39849566063dSJacob Faibussowitsch PetscCall(PetscFunctionListFind(DMList, method, &r)); 39857a8be351SBarry Smith PetscCheck(r, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown DM type: %s", method); 3986264ace61SBarry Smith 3987dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, destroy); 39889566063dSJacob Faibussowitsch PetscCall(PetscMemzero(dm->ops, sizeof(*dm->ops))); 39899566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)dm, method)); 39909566063dSJacob Faibussowitsch PetscCall((*r)(dm)); 39913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3992264ace61SBarry Smith } 3993264ace61SBarry Smith 3994cc4c1da9SBarry Smith /*@ 3995bb7acecfSBarry Smith DMGetType - Gets the `DM` type name (as a string) from the `DM`. 3996264ace61SBarry Smith 3997264ace61SBarry Smith Not Collective 3998264ace61SBarry Smith 3999264ace61SBarry Smith Input Parameter: 4000bb7acecfSBarry Smith . dm - The `DM` 4001264ace61SBarry Smith 4002264ace61SBarry Smith Output Parameter: 4003bb7acecfSBarry Smith . type - The `DMType` name 4004264ace61SBarry Smith 4005264ace61SBarry Smith Level: intermediate 4006264ace61SBarry Smith 40071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMSetType()`, `DMCreate()` 4008264ace61SBarry Smith @*/ 4009d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetType(DM dm, DMType *type) 4010d71ae5a4SJacob Faibussowitsch { 4011264ace61SBarry Smith PetscFunctionBegin; 4012264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 40134f572ea9SToby Isaac PetscAssertPointer(type, 2); 40149566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 4015264ace61SBarry Smith *type = ((PetscObject)dm)->type_name; 40163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4017264ace61SBarry Smith } 4018264ace61SBarry Smith 40195d83a8b1SBarry Smith /*@ 4020bb7acecfSBarry Smith DMConvert - Converts a `DM` to another `DM`, either of the same or different type. 402167a56275SMatthew G Knepley 402220f4b53cSBarry Smith Collective 402367a56275SMatthew G Knepley 402467a56275SMatthew G Knepley Input Parameters: 4025bb7acecfSBarry Smith + dm - the `DM` 4026bb7acecfSBarry Smith - newtype - new `DM` type (use "same" for the same type) 402767a56275SMatthew G Knepley 402867a56275SMatthew G Knepley Output Parameter: 4029bb7acecfSBarry Smith . M - pointer to new `DM` 403067a56275SMatthew G Knepley 403120f4b53cSBarry Smith Level: intermediate 403220f4b53cSBarry Smith 403373ff1848SBarry Smith Note: 4034bb7acecfSBarry Smith Cannot be used to convert a sequential `DM` to a parallel or a parallel to sequential, 4035bb7acecfSBarry Smith the MPI communicator of the generated `DM` is always the same as the communicator 4036bb7acecfSBarry Smith of the input `DM`. 403767a56275SMatthew G Knepley 40381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMCreate()`, `DMClone()` 403967a56275SMatthew G Knepley @*/ 4040d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConvert(DM dm, DMType newtype, DM *M) 4041d71ae5a4SJacob Faibussowitsch { 404267a56275SMatthew G Knepley DM B; 404367a56275SMatthew G Knepley char convname[256]; 4044c067b6caSMatthew G. Knepley PetscBool sametype /*, issame */; 404567a56275SMatthew G Knepley 404667a56275SMatthew G Knepley PetscFunctionBegin; 404767a56275SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 404867a56275SMatthew G Knepley PetscValidType(dm, 1); 40494f572ea9SToby Isaac PetscAssertPointer(M, 3); 40509566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, newtype, &sametype)); 40519566063dSJacob Faibussowitsch /* PetscCall(PetscStrcmp(newtype, "same", &issame)); */ 4052c067b6caSMatthew G. Knepley if (sametype) { 4053c067b6caSMatthew G. Knepley *M = dm; 40549566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 40553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4056c067b6caSMatthew G. Knepley } else { 40570298fd71SBarry Smith PetscErrorCode (*conv)(DM, DMType, DM *) = NULL; 405867a56275SMatthew G Knepley 405967a56275SMatthew G Knepley /* 406067a56275SMatthew G Knepley Order of precedence: 406167a56275SMatthew G Knepley 1) See if a specialized converter is known to the current DM. 406267a56275SMatthew G Knepley 2) See if a specialized converter is known to the desired DM class. 406367a56275SMatthew G Knepley 3) See if a good general converter is registered for the desired class 406467a56275SMatthew G Knepley 4) See if a good general converter is known for the current matrix. 406567a56275SMatthew G Knepley 5) Use a really basic converter. 406667a56275SMatthew G Knepley */ 406767a56275SMatthew G Knepley 406867a56275SMatthew G Knepley /* 1) See if a specialized converter is known to the current DM and the desired class */ 40699566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 40709566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 40719566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 40729566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 40739566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 40749566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)dm, convname, &conv)); 407567a56275SMatthew G Knepley if (conv) goto foundconv; 407667a56275SMatthew G Knepley 407767a56275SMatthew G Knepley /* 2) See if a specialized converter is known to the desired DM class. */ 40789566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &B)); 40799566063dSJacob Faibussowitsch PetscCall(DMSetType(B, newtype)); 40809566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 40819566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 40829566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 40839566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 40849566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 40859566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)B, convname, &conv)); 408667a56275SMatthew G Knepley if (conv) { 40879566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 408867a56275SMatthew G Knepley goto foundconv; 408967a56275SMatthew G Knepley } 409067a56275SMatthew G Knepley 409167a56275SMatthew G Knepley #if 0 409267a56275SMatthew G Knepley /* 3) See if a good general converter is registered for the desired class */ 409367a56275SMatthew G Knepley conv = B->ops->convertfrom; 40949566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 409567a56275SMatthew G Knepley if (conv) goto foundconv; 409667a56275SMatthew G Knepley 409767a56275SMatthew G Knepley /* 4) See if a good general converter is known for the current matrix */ 409867a56275SMatthew G Knepley if (dm->ops->convert) { 409967a56275SMatthew G Knepley conv = dm->ops->convert; 410067a56275SMatthew G Knepley } 410167a56275SMatthew G Knepley if (conv) goto foundconv; 410267a56275SMatthew G Knepley #endif 410367a56275SMatthew G Knepley 410467a56275SMatthew G Knepley /* 5) Use a really basic converter. */ 410598921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No conversion possible between DM types %s and %s", ((PetscObject)dm)->type_name, newtype); 410667a56275SMatthew G Knepley 410767a56275SMatthew G Knepley foundconv: 41089566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Convert, dm, 0, 0, 0)); 41099566063dSJacob Faibussowitsch PetscCall((*conv)(dm, newtype, M)); 411012fa691eSMatthew G. Knepley /* Things that are independent of DM type: We should consult DMClone() here */ 411190b157c4SStefano Zampini { 41124fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 41136858538eSMatthew G. Knepley 41144fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 41154fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*M, maxCell, Lstart, L)); 4116c8a6034eSMark (*M)->prealloc_only = dm->prealloc_only; 41179566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->vectype)); 41189566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*M)->vectype)); 41199566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->mattype)); 41209566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*M)->mattype)); 412112fa691eSMatthew G. Knepley } 41229566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Convert, dm, 0, 0, 0)); 412367a56275SMatthew G Knepley } 41249566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)*M)); 41253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 412667a56275SMatthew G Knepley } 4127264ace61SBarry Smith 4128264ace61SBarry Smith /*@C 4129bb7acecfSBarry Smith DMRegister - Adds a new `DM` type implementation 41301c84c290SBarry Smith 4131cc4c1da9SBarry Smith Not Collective, No Fortran Support 41321c84c290SBarry Smith 41331c84c290SBarry Smith Input Parameters: 413420f4b53cSBarry Smith + sname - The name of a new user-defined creation routine 413520f4b53cSBarry Smith - function - The creation routine itself 413620f4b53cSBarry Smith 413720f4b53cSBarry Smith Level: advanced 41381c84c290SBarry Smith 413973ff1848SBarry Smith Note: 414020f4b53cSBarry Smith `DMRegister()` may be called multiple times to add several user-defined `DM`s 41411c84c290SBarry Smith 414260225df5SJacob Faibussowitsch Example Usage: 41431c84c290SBarry Smith .vb 4144bdf89e91SBarry Smith DMRegister("my_da", MyDMCreate); 41451c84c290SBarry Smith .ve 41461c84c290SBarry Smith 414720f4b53cSBarry Smith Then, your `DM` type can be chosen with the procedural interface via 41481c84c290SBarry Smith .vb 41491c84c290SBarry Smith DMCreate(MPI_Comm, DM *); 41501c84c290SBarry Smith DMSetType(DM,"my_da"); 41511c84c290SBarry Smith .ve 41521c84c290SBarry Smith or at runtime via the option 41531c84c290SBarry Smith .vb 41541c84c290SBarry Smith -da_type my_da 41551c84c290SBarry Smith .ve 4156264ace61SBarry Smith 41571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMSetType()`, `DMRegisterAll()`, `DMRegisterDestroy()` 4158264ace61SBarry Smith @*/ 4159d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRegister(const char sname[], PetscErrorCode (*function)(DM)) 4160d71ae5a4SJacob Faibussowitsch { 4161264ace61SBarry Smith PetscFunctionBegin; 41629566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 41639566063dSJacob Faibussowitsch PetscCall(PetscFunctionListAdd(&DMList, sname, function)); 41643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4165264ace61SBarry Smith } 4166264ace61SBarry Smith 4167ffeef943SBarry Smith /*@ 4168bb7acecfSBarry Smith DMLoad - Loads a DM that has been stored in binary with `DMView()`. 4169b859378eSBarry Smith 417020f4b53cSBarry Smith Collective 4171b859378eSBarry Smith 4172b859378eSBarry Smith Input Parameters: 4173bb7acecfSBarry Smith + newdm - the newly loaded `DM`, this needs to have been created with `DMCreate()` or 4174bb7acecfSBarry Smith some related function before a call to `DMLoad()`. 4175bb7acecfSBarry Smith - viewer - binary file viewer, obtained from `PetscViewerBinaryOpen()` or 4176bb7acecfSBarry Smith `PETSCVIEWERHDF5` file viewer, obtained from `PetscViewerHDF5Open()` 4177b859378eSBarry Smith 4178b859378eSBarry Smith Level: intermediate 4179b859378eSBarry Smith 4180b859378eSBarry Smith Notes: 418155849f57SBarry Smith The type is determined by the data in the file, any type set into the DM before this call is ignored. 4182b859378eSBarry Smith 4183bb7acecfSBarry Smith Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` format, one can save multiple `DMPLEX` 4184bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 4185bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 4186cd7e8a5eSksagiyam 41871cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewerBinaryOpen()`, `DMView()`, `MatLoad()`, `VecLoad()` 4188b859378eSBarry Smith @*/ 4189d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLoad(DM newdm, PetscViewer viewer) 4190d71ae5a4SJacob Faibussowitsch { 41919331c7a4SMatthew G. Knepley PetscBool isbinary, ishdf5; 4192b859378eSBarry Smith 4193b859378eSBarry Smith PetscFunctionBegin; 4194b859378eSBarry Smith PetscValidHeaderSpecific(newdm, DM_CLASSID, 1); 4195b859378eSBarry Smith PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 41969566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckReadable(viewer)); 41979566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 41989566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 41999566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Load, viewer, 0, 0, 0)); 42009331c7a4SMatthew G. Knepley if (isbinary) { 42019331c7a4SMatthew G. Knepley PetscInt classid; 42029331c7a4SMatthew G. Knepley char type[256]; 4203b859378eSBarry Smith 42049566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &classid, 1, NULL, PETSC_INT)); 4205835f2295SStefano Zampini PetscCheck(classid == DM_FILE_CLASSID, PetscObjectComm((PetscObject)newdm), PETSC_ERR_ARG_WRONG, "Not DM next in file, classid found %" PetscInt_FMT, classid); 42069566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, type, 256, NULL, PETSC_CHAR)); 42079566063dSJacob Faibussowitsch PetscCall(DMSetType(newdm, type)); 4208dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 42099331c7a4SMatthew G. Knepley } else if (ishdf5) { 4210dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 42119331c7a4SMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerBinaryOpen() or PetscViewerHDF5Open()"); 42129566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Load, viewer, 0, 0, 0)); 42133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4214b859378eSBarry Smith } 4215b859378eSBarry Smith 42164ee01570SBarry Smith /* FEM Support */ 42177da65231SMatthew G Knepley 42182ecf6ec3SMatthew G. Knepley PetscErrorCode DMPrintCellIndices(PetscInt c, const char name[], PetscInt len, const PetscInt x[]) 42192ecf6ec3SMatthew G. Knepley { 42202ecf6ec3SMatthew G. Knepley PetscInt f; 42212ecf6ec3SMatthew G. Knepley 42222ecf6ec3SMatthew G. Knepley PetscFunctionBegin; 42232ecf6ec3SMatthew G. Knepley PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 42242ecf6ec3SMatthew G. Knepley for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %" PetscInt_FMT " |\n", x[f])); 42252ecf6ec3SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 42262ecf6ec3SMatthew G. Knepley } 42272ecf6ec3SMatthew G. Knepley 4228d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellVector(PetscInt c, const char name[], PetscInt len, const PetscScalar x[]) 4229d71ae5a4SJacob Faibussowitsch { 42301d47ebbbSSatish Balay PetscInt f; 42311b30c384SMatthew G Knepley 42327da65231SMatthew G Knepley PetscFunctionBegin; 423363a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 423448a46eb9SPierre Jolivet for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %g |\n", (double)PetscRealPart(x[f]))); 42353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42367da65231SMatthew G Knepley } 42377da65231SMatthew G Knepley 42385962854dSMatthew G. Knepley PetscErrorCode DMPrintCellVectorReal(PetscInt c, const char name[], PetscInt len, const PetscReal x[]) 42395962854dSMatthew G. Knepley { 42405962854dSMatthew G. Knepley PetscInt f; 42415962854dSMatthew G. Knepley 42425962854dSMatthew G. Knepley PetscFunctionBegin; 42435962854dSMatthew G. Knepley PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 42445962854dSMatthew G. Knepley for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %g |\n", (double)x[f])); 42455962854dSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 42465962854dSMatthew G. Knepley } 42475962854dSMatthew G. Knepley 4248d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellMatrix(PetscInt c, const char name[], PetscInt rows, PetscInt cols, const PetscScalar A[]) 4249d71ae5a4SJacob Faibussowitsch { 42501b30c384SMatthew G Knepley PetscInt f, g; 42517da65231SMatthew G Knepley 42527da65231SMatthew G Knepley PetscFunctionBegin; 425363a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 42541d47ebbbSSatish Balay for (f = 0; f < rows; ++f) { 42559566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |")); 425648a46eb9SPierre Jolivet for (g = 0; g < cols; ++g) PetscCall(PetscPrintf(PETSC_COMM_SELF, " % 9.5g", (double)PetscRealPart(A[f * cols + g]))); 42579566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |\n")); 42587da65231SMatthew G Knepley } 42593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42607da65231SMatthew G Knepley } 4261e7c4fc90SDmitry Karpeev 4262d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintLocalVec(DM dm, const char name[], PetscReal tol, Vec X) 4263d71ae5a4SJacob Faibussowitsch { 42640c5b8624SToby Isaac PetscInt localSize, bs; 42650c5b8624SToby Isaac PetscMPIInt size; 42660c5b8624SToby Isaac Vec x, xglob; 42670c5b8624SToby Isaac const PetscScalar *xarray; 4268e759306cSMatthew G. Knepley 4269e759306cSMatthew G. Knepley PetscFunctionBegin; 42709566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 42719566063dSJacob Faibussowitsch PetscCall(VecDuplicate(X, &x)); 42729566063dSJacob Faibussowitsch PetscCall(VecCopy(X, x)); 427393ec0da9SPierre Jolivet PetscCall(VecFilter(x, tol)); 42749566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "%s:\n", name)); 42750c5b8624SToby Isaac if (size > 1) { 42769566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(x, &localSize)); 42779566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xarray)); 42789566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize(x, &bs)); 42799566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)dm), bs, localSize, PETSC_DETERMINE, xarray, &xglob)); 42800c5b8624SToby Isaac } else { 42810c5b8624SToby Isaac xglob = x; 42820c5b8624SToby Isaac } 42839566063dSJacob Faibussowitsch PetscCall(VecView(xglob, PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)dm)))); 42840c5b8624SToby Isaac if (size > 1) { 42859566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xglob)); 42869566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xarray)); 42870c5b8624SToby Isaac } 42889566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 42893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4290e759306cSMatthew G. Knepley } 4291e759306cSMatthew G. Knepley 429288ed4aceSMatthew G Knepley /*@ 4293bb7acecfSBarry Smith DMGetLocalSection - Get the `PetscSection` encoding the local data layout for the `DM`. 429488ed4aceSMatthew G Knepley 429588ed4aceSMatthew G Knepley Input Parameter: 4296bb7acecfSBarry Smith . dm - The `DM` 429788ed4aceSMatthew G Knepley 429888ed4aceSMatthew G Knepley Output Parameter: 4299bb7acecfSBarry Smith . section - The `PetscSection` 430088ed4aceSMatthew G Knepley 430120f4b53cSBarry Smith Options Database Key: 4302bb7acecfSBarry Smith . -dm_petscsection_view - View the section created by the `DM` 4303e5893cccSMatthew G. Knepley 430488ed4aceSMatthew G Knepley Level: intermediate 430588ed4aceSMatthew G Knepley 4306bb7acecfSBarry Smith Note: 4307bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 430888ed4aceSMatthew G Knepley 43091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetGlobalSection()` 431088ed4aceSMatthew G Knepley @*/ 4311d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalSection(DM dm, PetscSection *section) 4312d71ae5a4SJacob Faibussowitsch { 431388ed4aceSMatthew G Knepley PetscFunctionBegin; 431488ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 43154f572ea9SToby Isaac PetscAssertPointer(section, 2); 43161bb6d2a8SBarry Smith if (!dm->localSection && dm->ops->createlocalsection) { 4317e5e52638SMatthew G. Knepley PetscInt d; 4318e5e52638SMatthew G. Knepley 431945480ffeSMatthew G. Knepley if (dm->setfromoptionscalled) { 432045480ffeSMatthew G. Knepley PetscObject obj = (PetscObject)dm; 432145480ffeSMatthew G. Knepley PetscViewer viewer; 432245480ffeSMatthew G. Knepley PetscViewerFormat format; 432345480ffeSMatthew G. Knepley PetscBool flg; 432445480ffeSMatthew G. Knepley 4325648c30bcSBarry Smith PetscCall(PetscOptionsCreateViewer(PetscObjectComm(obj), obj->options, obj->prefix, "-dm_petscds_view", &viewer, &format, &flg)); 43269566063dSJacob Faibussowitsch if (flg) PetscCall(PetscViewerPushFormat(viewer, format)); 432745480ffeSMatthew G. Knepley for (d = 0; d < dm->Nds; ++d) { 43289566063dSJacob Faibussowitsch PetscCall(PetscDSSetFromOptions(dm->probs[d].ds)); 43299566063dSJacob Faibussowitsch if (flg) PetscCall(PetscDSView(dm->probs[d].ds, viewer)); 433045480ffeSMatthew G. Knepley } 433145480ffeSMatthew G. Knepley if (flg) { 43329566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 43339566063dSJacob Faibussowitsch PetscCall(PetscViewerPopFormat(viewer)); 4334648c30bcSBarry Smith PetscCall(PetscViewerDestroy(&viewer)); 433545480ffeSMatthew G. Knepley } 433645480ffeSMatthew G. Knepley } 4337dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalsection); 43389566063dSJacob Faibussowitsch if (dm->localSection) PetscCall(PetscObjectViewFromOptions((PetscObject)dm->localSection, NULL, "-dm_petscsection_view")); 43392f0f8703SMatthew G. Knepley } 43401bb6d2a8SBarry Smith *section = dm->localSection; 43413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 434288ed4aceSMatthew G Knepley } 434388ed4aceSMatthew G Knepley 434488ed4aceSMatthew G Knepley /*@ 4345bb7acecfSBarry Smith DMSetLocalSection - Set the `PetscSection` encoding the local data layout for the `DM`. 434688ed4aceSMatthew G Knepley 434788ed4aceSMatthew G Knepley Input Parameters: 4348bb7acecfSBarry Smith + dm - The `DM` 4349bb7acecfSBarry Smith - section - The `PetscSection` 435088ed4aceSMatthew G Knepley 435188ed4aceSMatthew G Knepley Level: intermediate 435288ed4aceSMatthew G Knepley 4353bb7acecfSBarry Smith Note: 4354bb7acecfSBarry Smith Any existing Section will be destroyed 435588ed4aceSMatthew G Knepley 43561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMSetGlobalSection()` 435788ed4aceSMatthew G Knepley @*/ 4358d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLocalSection(DM dm, PetscSection section) 4359d71ae5a4SJacob Faibussowitsch { 4360c473ab19SMatthew G. Knepley PetscInt numFields = 0; 4361af122d2aSMatthew G Knepley PetscInt f; 436288ed4aceSMatthew G Knepley 436388ed4aceSMatthew G Knepley PetscFunctionBegin; 436488ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4365b9d85ea2SLisandro Dalcin if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 43669566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 43679566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->localSection)); 43681bb6d2a8SBarry Smith dm->localSection = section; 43699566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(dm->localSection, &numFields)); 4370af122d2aSMatthew G Knepley if (numFields) { 43719566063dSJacob Faibussowitsch PetscCall(DMSetNumFields(dm, numFields)); 4372af122d2aSMatthew G Knepley for (f = 0; f < numFields; ++f) { 43730f21e855SMatthew G. Knepley PetscObject disc; 4374af122d2aSMatthew G Knepley const char *name; 4375af122d2aSMatthew G Knepley 43769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(dm->localSection, f, &name)); 43779566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &disc)); 43789566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName(disc, name)); 4379af122d2aSMatthew G Knepley } 4380af122d2aSMatthew G Knepley } 438150350c8eSStefano Zampini /* The global section and the SectionSF will be rebuilt 438250350c8eSStefano Zampini in the next call to DMGetGlobalSection() and DMGetSectionSF(). */ 43839566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 438450350c8eSStefano Zampini PetscCall(PetscSFDestroy(&dm->sectionSF)); 438552947b74SStefano Zampini PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 438650350c8eSStefano Zampini 438750350c8eSStefano Zampini /* Clear scratch vectors */ 438850350c8eSStefano Zampini PetscCall(DMClearGlobalVectors(dm)); 438950350c8eSStefano Zampini PetscCall(DMClearLocalVectors(dm)); 439050350c8eSStefano Zampini PetscCall(DMClearNamedGlobalVectors(dm)); 439150350c8eSStefano Zampini PetscCall(DMClearNamedLocalVectors(dm)); 43923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 439388ed4aceSMatthew G Knepley } 439488ed4aceSMatthew G Knepley 4395adc21957SMatthew G. Knepley /*@C 4396d8b4a066SPierre Jolivet DMCreateSectionPermutation - Create a permutation of the `PetscSection` chart and optionally a block structure. 4397adc21957SMatthew G. Knepley 4398adc21957SMatthew G. Knepley Input Parameter: 4399adc21957SMatthew G. Knepley . dm - The `DM` 4400adc21957SMatthew G. Knepley 44019cde84edSJose E. Roman Output Parameters: 4402adc21957SMatthew G. Knepley + perm - A permutation of the mesh points in the chart 4403b6971eaeSBarry Smith - blockStarts - A high bit is set for the point that begins every block, or `NULL` for default blocking 4404adc21957SMatthew G. Knepley 4405adc21957SMatthew G. Knepley Level: developer 4406adc21957SMatthew G. Knepley 4407adc21957SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMGetGlobalSection()` 4408adc21957SMatthew G. Knepley @*/ 4409adc21957SMatthew G. Knepley PetscErrorCode DMCreateSectionPermutation(DM dm, IS *perm, PetscBT *blockStarts) 4410adc21957SMatthew G. Knepley { 4411adc21957SMatthew G. Knepley PetscFunctionBegin; 4412adc21957SMatthew G. Knepley *perm = NULL; 4413adc21957SMatthew G. Knepley *blockStarts = NULL; 4414adc21957SMatthew G. Knepley PetscTryTypeMethod(dm, createsectionpermutation, perm, blockStarts); 4415adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 4416adc21957SMatthew G. Knepley } 4417adc21957SMatthew G. Knepley 44189435951eSToby Isaac /*@ 4419bb7acecfSBarry Smith DMGetDefaultConstraints - Get the `PetscSection` and `Mat` that specify the local constraint interpolation. See `DMSetDefaultConstraints()` for a description of the purpose of constraint interpolation. 44209435951eSToby Isaac 442120f4b53cSBarry Smith not Collective 4422e228b242SToby Isaac 44239435951eSToby Isaac Input Parameter: 4424bb7acecfSBarry Smith . dm - The `DM` 44259435951eSToby Isaac 4426d8d19677SJose E. Roman Output Parameters: 442720f4b53cSBarry Smith + section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Returns `NULL` if there are no local constraints. 442820f4b53cSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section. Returns `NULL` if there are no local constraints. 442979769bd5SJed Brown - bias - Vector containing bias to be added to constrained dofs 44309435951eSToby Isaac 44319435951eSToby Isaac Level: advanced 44329435951eSToby Isaac 4433bb7acecfSBarry Smith Note: 4434bb7acecfSBarry Smith This gets borrowed references, so the user should not destroy the `PetscSection`, `Mat`, or `Vec`. 44359435951eSToby Isaac 44361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDefaultConstraints()` 44379435951eSToby Isaac @*/ 4438d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDefaultConstraints(DM dm, PetscSection *section, Mat *mat, Vec *bias) 4439d71ae5a4SJacob Faibussowitsch { 44409435951eSToby Isaac PetscFunctionBegin; 44419435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4442dbbe0bcdSBarry Smith if (!dm->defaultConstraint.section && !dm->defaultConstraint.mat && dm->ops->createdefaultconstraints) PetscUseTypeMethod(dm, createdefaultconstraints); 44433b8ba7d1SJed Brown if (section) *section = dm->defaultConstraint.section; 44443b8ba7d1SJed Brown if (mat) *mat = dm->defaultConstraint.mat; 444579769bd5SJed Brown if (bias) *bias = dm->defaultConstraint.bias; 44463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44479435951eSToby Isaac } 44489435951eSToby Isaac 44499435951eSToby Isaac /*@ 4450bb7acecfSBarry Smith DMSetDefaultConstraints - Set the `PetscSection` and `Mat` that specify the local constraint interpolation. 44519435951eSToby Isaac 445220f4b53cSBarry Smith Collective 4453e228b242SToby Isaac 44549435951eSToby Isaac Input Parameters: 4455bb7acecfSBarry Smith + dm - The `DM` 4456bb7acecfSBarry Smith . section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 445720f4b53cSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section: `NULL` indicates no constraints. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 445820f4b53cSBarry Smith - bias - A bias vector to be added to constrained values in the local vector. `NULL` indicates no bias. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 44599435951eSToby Isaac 44609435951eSToby Isaac Level: advanced 44619435951eSToby Isaac 446220f4b53cSBarry Smith Notes: 446320f4b53cSBarry Smith If a constraint matrix is specified, then it is applied during `DMGlobalToLocalEnd()` when mode is `INSERT_VALUES`, `INSERT_BC_VALUES`, or `INSERT_ALL_VALUES`. Without a constraint matrix, the local vector l returned by `DMGlobalToLocalEnd()` contains values that have been scattered from a global vector without modification; with a constraint matrix A, l is modified by computing c = A * l + bias, l[s[i]] = c[i], where the scatter s is defined by the `PetscSection` returned by `DMGetDefaultConstraints()`. 446420f4b53cSBarry Smith 446520f4b53cSBarry Smith If a constraint matrix is specified, then its adjoint is applied during `DMLocalToGlobalBegin()` when mode is `ADD_VALUES`, `ADD_BC_VALUES`, or `ADD_ALL_VALUES`. Without a constraint matrix, the local vector l is accumulated into a global vector without modification; with a constraint matrix A, l is first modified by computing c[i] = l[s[i]], l[s[i]] = 0, l = l + A'*c, which is the adjoint of the operation described above. Any bias, if specified, is ignored when accumulating. 446620f4b53cSBarry Smith 4467bb7acecfSBarry Smith This increments the references of the `PetscSection`, `Mat`, and `Vec`, so they user can destroy them. 44689435951eSToby Isaac 44691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDefaultConstraints()` 44709435951eSToby Isaac @*/ 4471d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDefaultConstraints(DM dm, PetscSection section, Mat mat, Vec bias) 4472d71ae5a4SJacob Faibussowitsch { 4473e228b242SToby Isaac PetscMPIInt result; 44749435951eSToby Isaac 44759435951eSToby Isaac PetscFunctionBegin; 44769435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4477e228b242SToby Isaac if (section) { 4478e228b242SToby Isaac PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 44799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)section), &result)); 44807a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint section must have local communicator"); 4481e228b242SToby Isaac } 4482e228b242SToby Isaac if (mat) { 4483e228b242SToby Isaac PetscValidHeaderSpecific(mat, MAT_CLASSID, 3); 44849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)mat), &result)); 44857a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint matrix must have local communicator"); 4486e228b242SToby Isaac } 448779769bd5SJed Brown if (bias) { 448879769bd5SJed Brown PetscValidHeaderSpecific(bias, VEC_CLASSID, 4); 44899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)bias), &result)); 449079769bd5SJed Brown PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint bias must have local communicator"); 449179769bd5SJed Brown } 44929566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 44939566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->defaultConstraint.section)); 44943b8ba7d1SJed Brown dm->defaultConstraint.section = section; 44959566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mat)); 44969566063dSJacob Faibussowitsch PetscCall(MatDestroy(&dm->defaultConstraint.mat)); 44973b8ba7d1SJed Brown dm->defaultConstraint.mat = mat; 44989566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)bias)); 44999566063dSJacob Faibussowitsch PetscCall(VecDestroy(&dm->defaultConstraint.bias)); 450079769bd5SJed Brown dm->defaultConstraint.bias = bias; 45013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 45029435951eSToby Isaac } 45039435951eSToby Isaac 4504497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 4505507e4973SMatthew G. Knepley /* 4506bb7acecfSBarry Smith DMDefaultSectionCheckConsistency - Check the consistentcy of the global and local sections. Generates and error if they are not consistent. 4507507e4973SMatthew G. Knepley 4508507e4973SMatthew G. Knepley Input Parameters: 4509bb7acecfSBarry Smith + dm - The `DM` 4510bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4511bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 4512507e4973SMatthew G. Knepley 4513507e4973SMatthew G. Knepley Level: intermediate 4514507e4973SMatthew G. Knepley 45151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()` 4516507e4973SMatthew G. Knepley */ 4517d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(DM dm, PetscSection localSection, PetscSection globalSection) 4518d71ae5a4SJacob Faibussowitsch { 4519507e4973SMatthew G. Knepley MPI_Comm comm; 4520507e4973SMatthew G. Knepley PetscLayout layout; 4521507e4973SMatthew G. Knepley const PetscInt *ranges; 4522507e4973SMatthew G. Knepley PetscInt pStart, pEnd, p, nroots; 4523507e4973SMatthew G. Knepley PetscMPIInt size, rank; 4524507e4973SMatthew G. Knepley PetscBool valid = PETSC_TRUE, gvalid; 4525507e4973SMatthew G. Knepley 4526507e4973SMatthew G. Knepley PetscFunctionBegin; 45279566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 4528507e4973SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45299566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 45309566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 45319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(globalSection, &pStart, &pEnd)); 45329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &nroots)); 45339566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &layout)); 45349566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(layout, 1)); 45359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(layout, nroots)); 45369566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(layout)); 45379566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(layout, &ranges)); 4538507e4973SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 4539f741bcd2SMatthew G. Knepley PetscInt dof, cdof, off, gdof, gcdof, goff, gsize, d; 4540507e4973SMatthew G. Knepley 45419566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(localSection, p, &dof)); 45429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(localSection, p, &off)); 45439566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(localSection, p, &cdof)); 45449566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(globalSection, p, &gdof)); 45459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(globalSection, p, &gcdof)); 45469566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalSection, p, &goff)); 4547507e4973SMatthew G. Knepley if (!gdof) continue; /* Censored point */ 45489371c9d4SSatish Balay if ((gdof < 0 ? -(gdof + 1) : gdof) != dof) { 45499371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local dof %" PetscInt_FMT "\n", rank, gdof, p, dof)); 45509371c9d4SSatish Balay valid = PETSC_FALSE; 45519371c9d4SSatish Balay } 45529371c9d4SSatish Balay if (gcdof && (gcdof != cdof)) { 45539371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global constraints %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local constraints %" PetscInt_FMT "\n", rank, gcdof, p, cdof)); 45549371c9d4SSatish Balay valid = PETSC_FALSE; 45559371c9d4SSatish Balay } 4556507e4973SMatthew G. Knepley if (gdof < 0) { 4557507e4973SMatthew G. Knepley gsize = gdof < 0 ? -(gdof + 1) - gcdof : gdof - gcdof; 4558507e4973SMatthew G. Knepley for (d = 0; d < gsize; ++d) { 4559507e4973SMatthew G. Knepley PetscInt offset = -(goff + 1) + d, r; 4560507e4973SMatthew G. Knepley 45619566063dSJacob Faibussowitsch PetscCall(PetscFindInt(offset, size + 1, ranges, &r)); 4562507e4973SMatthew G. Knepley if (r < 0) r = -(r + 2); 45639371c9d4SSatish Balay if ((r < 0) || (r >= size)) { 45649371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Point %" PetscInt_FMT " mapped to invalid process %" PetscInt_FMT " (%" PetscInt_FMT ", %" PetscInt_FMT ")\n", rank, p, r, gdof, goff)); 45659371c9d4SSatish Balay valid = PETSC_FALSE; 45669371c9d4SSatish Balay break; 45679371c9d4SSatish Balay } 4568507e4973SMatthew G. Knepley } 4569507e4973SMatthew G. Knepley } 4570507e4973SMatthew G. Knepley } 45719566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&layout)); 45729566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, NULL)); 4573462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&valid, &gvalid, 1, MPIU_BOOL, MPI_LAND, comm)); 4574507e4973SMatthew G. Knepley if (!gvalid) { 45759566063dSJacob Faibussowitsch PetscCall(DMView(dm, NULL)); 4576507e4973SMatthew G. Knepley SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Inconsistent local and global sections"); 4577507e4973SMatthew G. Knepley } 45783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4579507e4973SMatthew G. Knepley } 4580f741bcd2SMatthew G. Knepley #endif 4581507e4973SMatthew G. Knepley 458290df3356SJames Wright PetscErrorCode DMGetIsoperiodicPointSF_Internal(DM dm, PetscSF *sf) 45836725e60dSJed Brown { 45846725e60dSJed Brown PetscErrorCode (*f)(DM, PetscSF *); 45854d86920dSPierre Jolivet 45866725e60dSJed Brown PetscFunctionBegin; 45876725e60dSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45884f572ea9SToby Isaac PetscAssertPointer(sf, 2); 45895f06a3ddSJed Brown PetscCall(PetscObjectQueryFunction((PetscObject)dm, "DMGetIsoperiodicPointSF_C", &f)); 45906725e60dSJed Brown if (f) PetscCall(f(dm, sf)); 45916725e60dSJed Brown else *sf = dm->sf; 45923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 45936725e60dSJed Brown } 45946725e60dSJed Brown 459588ed4aceSMatthew G Knepley /*@ 4596bb7acecfSBarry Smith DMGetGlobalSection - Get the `PetscSection` encoding the global data layout for the `DM`. 459788ed4aceSMatthew G Knepley 459820f4b53cSBarry Smith Collective 45998b1ab98fSJed Brown 460088ed4aceSMatthew G Knepley Input Parameter: 4601bb7acecfSBarry Smith . dm - The `DM` 460288ed4aceSMatthew G Knepley 460388ed4aceSMatthew G Knepley Output Parameter: 4604bb7acecfSBarry Smith . section - The `PetscSection` 460588ed4aceSMatthew G Knepley 460688ed4aceSMatthew G Knepley Level: intermediate 460788ed4aceSMatthew G Knepley 4608bb7acecfSBarry Smith Note: 4609bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 461088ed4aceSMatthew G Knepley 46111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()` 461288ed4aceSMatthew G Knepley @*/ 4613d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetGlobalSection(DM dm, PetscSection *section) 4614d71ae5a4SJacob Faibussowitsch { 461588ed4aceSMatthew G Knepley PetscFunctionBegin; 461688ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46174f572ea9SToby Isaac PetscAssertPointer(section, 2); 46181bb6d2a8SBarry Smith if (!dm->globalSection) { 4619fd59a867SMatthew G. Knepley PetscSection s; 46206725e60dSJed Brown PetscSF sf; 4621fd59a867SMatthew G. Knepley 46229566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 46237a8be351SBarry Smith PetscCheck(s, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a default PetscSection in order to create a global PetscSection"); 46247a8be351SBarry Smith PetscCheck(dm->sf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a point PetscSF in order to create a global PetscSection"); 46255f06a3ddSJed Brown PetscCall(DMGetIsoperiodicPointSF_Internal(dm, &sf)); 4626eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionCreateGlobalSection(s, sf, PETSC_TRUE, PETSC_FALSE, PETSC_FALSE, &dm->globalSection)); 46279566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&dm->map)); 46289566063dSJacob Faibussowitsch PetscCall(PetscSectionGetValueLayout(PetscObjectComm((PetscObject)dm), dm->globalSection, &dm->map)); 46299566063dSJacob Faibussowitsch PetscCall(PetscSectionViewFromOptions(dm->globalSection, NULL, "-global_section_view")); 463088ed4aceSMatthew G Knepley } 46311bb6d2a8SBarry Smith *section = dm->globalSection; 46323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 463388ed4aceSMatthew G Knepley } 463488ed4aceSMatthew G Knepley 4635b21d0597SMatthew G Knepley /*@ 4636bb7acecfSBarry Smith DMSetGlobalSection - Set the `PetscSection` encoding the global data layout for the `DM`. 4637b21d0597SMatthew G Knepley 4638b21d0597SMatthew G Knepley Input Parameters: 4639bb7acecfSBarry Smith + dm - The `DM` 46402fe279fdSBarry Smith - section - The PetscSection, or `NULL` 4641b21d0597SMatthew G Knepley 4642b21d0597SMatthew G Knepley Level: intermediate 4643b21d0597SMatthew G Knepley 4644bb7acecfSBarry Smith Note: 4645bb7acecfSBarry Smith Any existing `PetscSection` will be destroyed 4646b21d0597SMatthew G Knepley 46471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetGlobalSection()`, `DMSetLocalSection()` 4648b21d0597SMatthew G Knepley @*/ 4649d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetGlobalSection(DM dm, PetscSection section) 4650d71ae5a4SJacob Faibussowitsch { 4651b21d0597SMatthew G Knepley PetscFunctionBegin; 4652b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46535080bbdbSMatthew G Knepley if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 46549566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 46559566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 46561bb6d2a8SBarry Smith dm->globalSection = section; 4657497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 46589566063dSJacob Faibussowitsch if (section) PetscCall(DMDefaultSectionCheckConsistency_Internal(dm, dm->localSection, section)); 4659507e4973SMatthew G. Knepley #endif 466050350c8eSStefano Zampini /* Clear global scratch vectors and sectionSF */ 466150350c8eSStefano Zampini PetscCall(PetscSFDestroy(&dm->sectionSF)); 466252947b74SStefano Zampini PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 466350350c8eSStefano Zampini PetscCall(DMClearGlobalVectors(dm)); 466450350c8eSStefano Zampini PetscCall(DMClearNamedGlobalVectors(dm)); 46653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4666b21d0597SMatthew G Knepley } 4667b21d0597SMatthew G Knepley 466888ed4aceSMatthew G Knepley /*@ 4669bb7acecfSBarry Smith DMGetSectionSF - Get the `PetscSF` encoding the parallel dof overlap for the `DM`. If it has not been set, 4670bb7acecfSBarry Smith it is created from the default `PetscSection` layouts in the `DM`. 467188ed4aceSMatthew G Knepley 467288ed4aceSMatthew G Knepley Input Parameter: 4673bb7acecfSBarry Smith . dm - The `DM` 467488ed4aceSMatthew G Knepley 467588ed4aceSMatthew G Knepley Output Parameter: 4676bb7acecfSBarry Smith . sf - The `PetscSF` 467788ed4aceSMatthew G Knepley 467888ed4aceSMatthew G Knepley Level: intermediate 467988ed4aceSMatthew G Knepley 4680bb7acecfSBarry Smith Note: 4681bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 468288ed4aceSMatthew G Knepley 46831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetSectionSF()`, `DMCreateSectionSF()` 468488ed4aceSMatthew G Knepley @*/ 4685d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSectionSF(DM dm, PetscSF *sf) 4686d71ae5a4SJacob Faibussowitsch { 468788ed4aceSMatthew G Knepley PetscInt nroots; 468888ed4aceSMatthew G Knepley 468988ed4aceSMatthew G Knepley PetscFunctionBegin; 469088ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46914f572ea9SToby Isaac PetscAssertPointer(sf, 2); 469248a46eb9SPierre Jolivet if (!dm->sectionSF) PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 46939566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sectionSF, &nroots, NULL, NULL, NULL)); 469488ed4aceSMatthew G Knepley if (nroots < 0) { 469588ed4aceSMatthew G Knepley PetscSection section, gSection; 469688ed4aceSMatthew G Knepley 46979566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 469831ea6d37SMatthew G Knepley if (section) { 46999566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gSection)); 47009566063dSJacob Faibussowitsch PetscCall(DMCreateSectionSF(dm, section, gSection)); 470131ea6d37SMatthew G Knepley } else { 47020298fd71SBarry Smith *sf = NULL; 47033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 470431ea6d37SMatthew G Knepley } 470588ed4aceSMatthew G Knepley } 47061bb6d2a8SBarry Smith *sf = dm->sectionSF; 47073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 470888ed4aceSMatthew G Knepley } 470988ed4aceSMatthew G Knepley 471088ed4aceSMatthew G Knepley /*@ 4711bb7acecfSBarry Smith DMSetSectionSF - Set the `PetscSF` encoding the parallel dof overlap for the `DM` 471288ed4aceSMatthew G Knepley 471388ed4aceSMatthew G Knepley Input Parameters: 4714bb7acecfSBarry Smith + dm - The `DM` 4715bb7acecfSBarry Smith - sf - The `PetscSF` 471688ed4aceSMatthew G Knepley 471788ed4aceSMatthew G Knepley Level: intermediate 471888ed4aceSMatthew G Knepley 4719bb7acecfSBarry Smith Note: 4720bb7acecfSBarry Smith Any previous `PetscSF` is destroyed 472188ed4aceSMatthew G Knepley 47221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMCreateSectionSF()` 472388ed4aceSMatthew G Knepley @*/ 4724d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSectionSF(DM dm, PetscSF sf) 4725d71ae5a4SJacob Faibussowitsch { 472688ed4aceSMatthew G Knepley PetscFunctionBegin; 472788ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4728b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 47299566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 47309566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sectionSF)); 47311bb6d2a8SBarry Smith dm->sectionSF = sf; 47323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 473388ed4aceSMatthew G Knepley } 473488ed4aceSMatthew G Knepley 4735cc4c1da9SBarry Smith /*@ 4736bb7acecfSBarry Smith DMCreateSectionSF - Create the `PetscSF` encoding the parallel dof overlap for the `DM` based upon the `PetscSection`s 473788ed4aceSMatthew G Knepley describing the data layout. 473888ed4aceSMatthew G Knepley 473988ed4aceSMatthew G Knepley Input Parameters: 4740bb7acecfSBarry Smith + dm - The `DM` 4741bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4742bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 474388ed4aceSMatthew G Knepley 47441bb6d2a8SBarry Smith Level: developer 47451bb6d2a8SBarry Smith 4746bb7acecfSBarry Smith Note: 4747bb7acecfSBarry Smith One usually uses `DMGetSectionSF()` to obtain the `PetscSF` 4748bb7acecfSBarry Smith 474973ff1848SBarry Smith Developer Note: 4750bb7acecfSBarry Smith Since this routine has for arguments the two sections from the `DM` and puts the resulting `PetscSF` 4751bb7acecfSBarry Smith directly into the `DM`, perhaps this function should not take the local and global sections as 4752b6971eaeSBarry Smith input and should just obtain them from the `DM`? Plus PETSc creation functions return the thing 4753b6971eaeSBarry Smith they create, this returns nothing 47541bb6d2a8SBarry Smith 47551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMGetLocalSection()`, `DMGetGlobalSection()` 475688ed4aceSMatthew G Knepley @*/ 4757d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSectionSF(DM dm, PetscSection localSection, PetscSection globalSection) 4758d71ae5a4SJacob Faibussowitsch { 475988ed4aceSMatthew G Knepley PetscFunctionBegin; 476088ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47619566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphSection(dm->sectionSF, localSection, globalSection)); 47623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 476388ed4aceSMatthew G Knepley } 4764af122d2aSMatthew G Knepley 4765b21d0597SMatthew G Knepley /*@ 4766bb7acecfSBarry Smith DMGetPointSF - Get the `PetscSF` encoding the parallel section point overlap for the `DM`. 4767bb7acecfSBarry Smith 4768bb7acecfSBarry Smith Not collective but the resulting `PetscSF` is collective 4769b21d0597SMatthew G Knepley 4770b21d0597SMatthew G Knepley Input Parameter: 4771bb7acecfSBarry Smith . dm - The `DM` 4772b21d0597SMatthew G Knepley 4773b21d0597SMatthew G Knepley Output Parameter: 4774bb7acecfSBarry Smith . sf - The `PetscSF` 4775b21d0597SMatthew G Knepley 4776b21d0597SMatthew G Knepley Level: intermediate 4777b21d0597SMatthew G Knepley 4778bb7acecfSBarry Smith Note: 4779bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 4780b21d0597SMatthew G Knepley 47811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4782b21d0597SMatthew G Knepley @*/ 4783d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetPointSF(DM dm, PetscSF *sf) 4784d71ae5a4SJacob Faibussowitsch { 4785b21d0597SMatthew G Knepley PetscFunctionBegin; 4786b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47874f572ea9SToby Isaac PetscAssertPointer(sf, 2); 4788b21d0597SMatthew G Knepley *sf = dm->sf; 47893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4790b21d0597SMatthew G Knepley } 4791b21d0597SMatthew G Knepley 4792057b4bcdSMatthew G Knepley /*@ 4793bb7acecfSBarry Smith DMSetPointSF - Set the `PetscSF` encoding the parallel section point overlap for the `DM`. 4794bb7acecfSBarry Smith 479520f4b53cSBarry Smith Collective 4796057b4bcdSMatthew G Knepley 4797057b4bcdSMatthew G Knepley Input Parameters: 4798bb7acecfSBarry Smith + dm - The `DM` 4799bb7acecfSBarry Smith - sf - The `PetscSF` 4800057b4bcdSMatthew G Knepley 4801057b4bcdSMatthew G Knepley Level: intermediate 4802057b4bcdSMatthew G Knepley 48031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4804057b4bcdSMatthew G Knepley @*/ 4805d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetPointSF(DM dm, PetscSF sf) 4806d71ae5a4SJacob Faibussowitsch { 4807057b4bcdSMatthew G Knepley PetscFunctionBegin; 4808057b4bcdSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4809b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 48109566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 48119566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sf)); 4812057b4bcdSMatthew G Knepley dm->sf = sf; 48133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4814057b4bcdSMatthew G Knepley } 4815057b4bcdSMatthew G Knepley 48164f37162bSMatthew G. Knepley /*@ 4817bb7acecfSBarry Smith DMGetNaturalSF - Get the `PetscSF` encoding the map back to the original mesh ordering 48184f37162bSMatthew G. Knepley 48194f37162bSMatthew G. Knepley Input Parameter: 4820bb7acecfSBarry Smith . dm - The `DM` 48214f37162bSMatthew G. Knepley 48224f37162bSMatthew G. Knepley Output Parameter: 4823bb7acecfSBarry Smith . sf - The `PetscSF` 48244f37162bSMatthew G. Knepley 48254f37162bSMatthew G. Knepley Level: intermediate 48264f37162bSMatthew G. Knepley 4827bb7acecfSBarry Smith Note: 4828bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 48294f37162bSMatthew G. Knepley 48301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 48314f37162bSMatthew G. Knepley @*/ 4832d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNaturalSF(DM dm, PetscSF *sf) 4833d71ae5a4SJacob Faibussowitsch { 48344f37162bSMatthew G. Knepley PetscFunctionBegin; 48354f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48364f572ea9SToby Isaac PetscAssertPointer(sf, 2); 48374f37162bSMatthew G. Knepley *sf = dm->sfNatural; 48383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48394f37162bSMatthew G. Knepley } 48404f37162bSMatthew G. Knepley 48414f37162bSMatthew G. Knepley /*@ 48424f37162bSMatthew G. Knepley DMSetNaturalSF - Set the PetscSF encoding the map back to the original mesh ordering 48434f37162bSMatthew G. Knepley 48444f37162bSMatthew G. Knepley Input Parameters: 48454f37162bSMatthew G. Knepley + dm - The DM 48464f37162bSMatthew G. Knepley - sf - The PetscSF 48474f37162bSMatthew G. Knepley 48484f37162bSMatthew G. Knepley Level: intermediate 48494f37162bSMatthew G. Knepley 48501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 48514f37162bSMatthew G. Knepley @*/ 4852d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNaturalSF(DM dm, PetscSF sf) 4853d71ae5a4SJacob Faibussowitsch { 48544f37162bSMatthew G. Knepley PetscFunctionBegin; 48554f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48564f37162bSMatthew G. Knepley if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 48579566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 48589566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sfNatural)); 48594f37162bSMatthew G. Knepley dm->sfNatural = sf; 48603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48614f37162bSMatthew G. Knepley } 48624f37162bSMatthew G. Knepley 4863d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetDefaultAdjacency_Private(DM dm, PetscInt f, PetscObject disc) 4864d71ae5a4SJacob Faibussowitsch { 486534aa8a36SMatthew G. Knepley PetscClassId id; 486634aa8a36SMatthew G. Knepley 486734aa8a36SMatthew G. Knepley PetscFunctionBegin; 48689566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 486934aa8a36SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 48709566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 487134aa8a36SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 48729566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_TRUE, PETSC_FALSE)); 487317c1d62eSMatthew G. Knepley } else { 48749566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 487534aa8a36SMatthew G. Knepley } 48763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 487734aa8a36SMatthew G. Knepley } 487834aa8a36SMatthew G. Knepley 4879d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFieldEnlarge_Static(DM dm, PetscInt NfNew) 4880d71ae5a4SJacob Faibussowitsch { 488144a7f3ddSMatthew G. Knepley RegionField *tmpr; 488244a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf, f; 488344a7f3ddSMatthew G. Knepley 488444a7f3ddSMatthew G. Knepley PetscFunctionBegin; 48853ba16761SJacob Faibussowitsch if (Nf >= NfNew) PetscFunctionReturn(PETSC_SUCCESS); 48869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NfNew, &tmpr)); 488744a7f3ddSMatthew G. Knepley for (f = 0; f < Nf; ++f) tmpr[f] = dm->fields[f]; 48889371c9d4SSatish Balay for (f = Nf; f < NfNew; ++f) { 48899371c9d4SSatish Balay tmpr[f].disc = NULL; 48909371c9d4SSatish Balay tmpr[f].label = NULL; 48919371c9d4SSatish Balay tmpr[f].avoidTensor = PETSC_FALSE; 48929371c9d4SSatish Balay } 48939566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 489444a7f3ddSMatthew G. Knepley dm->Nf = NfNew; 489544a7f3ddSMatthew G. Knepley dm->fields = tmpr; 48963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 489744a7f3ddSMatthew G. Knepley } 489844a7f3ddSMatthew G. Knepley 489944a7f3ddSMatthew G. Knepley /*@ 490020f4b53cSBarry Smith DMClearFields - Remove all fields from the `DM` 490144a7f3ddSMatthew G. Knepley 490220f4b53cSBarry Smith Logically Collective 490344a7f3ddSMatthew G. Knepley 490444a7f3ddSMatthew G. Knepley Input Parameter: 490520f4b53cSBarry Smith . dm - The `DM` 490644a7f3ddSMatthew G. Knepley 490744a7f3ddSMatthew G. Knepley Level: intermediate 490844a7f3ddSMatthew G. Knepley 49091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetNumFields()`, `DMSetField()` 491044a7f3ddSMatthew G. Knepley @*/ 4911d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearFields(DM dm) 4912d71ae5a4SJacob Faibussowitsch { 491344a7f3ddSMatthew G. Knepley PetscInt f; 491444a7f3ddSMatthew G. Knepley 491544a7f3ddSMatthew G. Knepley PetscFunctionBegin; 491644a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 491744a7f3ddSMatthew G. Knepley for (f = 0; f < dm->Nf; ++f) { 49189566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 49199566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 492044a7f3ddSMatthew G. Knepley } 49219566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 492244a7f3ddSMatthew G. Knepley dm->fields = NULL; 492344a7f3ddSMatthew G. Knepley dm->Nf = 0; 49243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 492544a7f3ddSMatthew G. Knepley } 492644a7f3ddSMatthew G. Knepley 4927689b5837SMatthew G. Knepley /*@ 492820f4b53cSBarry Smith DMGetNumFields - Get the number of fields in the `DM` 4929689b5837SMatthew G. Knepley 493020f4b53cSBarry Smith Not Collective 4931689b5837SMatthew G. Knepley 4932689b5837SMatthew G. Knepley Input Parameter: 493320f4b53cSBarry Smith . dm - The `DM` 4934689b5837SMatthew G. Knepley 4935689b5837SMatthew G. Knepley Output Parameter: 493660225df5SJacob Faibussowitsch . numFields - The number of fields 4937689b5837SMatthew G. Knepley 4938689b5837SMatthew G. Knepley Level: intermediate 4939689b5837SMatthew G. Knepley 49401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNumFields()`, `DMSetField()` 4941689b5837SMatthew G. Knepley @*/ 4942d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumFields(DM dm, PetscInt *numFields) 4943d71ae5a4SJacob Faibussowitsch { 49440f21e855SMatthew G. Knepley PetscFunctionBegin; 49450f21e855SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49464f572ea9SToby Isaac PetscAssertPointer(numFields, 2); 494744a7f3ddSMatthew G. Knepley *numFields = dm->Nf; 49483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4949af122d2aSMatthew G Knepley } 4950af122d2aSMatthew G Knepley 4951689b5837SMatthew G. Knepley /*@ 495220f4b53cSBarry Smith DMSetNumFields - Set the number of fields in the `DM` 4953689b5837SMatthew G. Knepley 495420f4b53cSBarry Smith Logically Collective 4955689b5837SMatthew G. Knepley 4956689b5837SMatthew G. Knepley Input Parameters: 495720f4b53cSBarry Smith + dm - The `DM` 495860225df5SJacob Faibussowitsch - numFields - The number of fields 4959689b5837SMatthew G. Knepley 4960689b5837SMatthew G. Knepley Level: intermediate 4961689b5837SMatthew G. Knepley 49621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetField()` 4963689b5837SMatthew G. Knepley @*/ 4964d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNumFields(DM dm, PetscInt numFields) 4965d71ae5a4SJacob Faibussowitsch { 49660f21e855SMatthew G. Knepley PetscInt Nf, f; 4967af122d2aSMatthew G Knepley 4968af122d2aSMatthew G Knepley PetscFunctionBegin; 4969af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49709566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 49710f21e855SMatthew G. Knepley for (f = Nf; f < numFields; ++f) { 49720f21e855SMatthew G. Knepley PetscContainer obj; 49730f21e855SMatthew G. Knepley 49749566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject)dm), &obj)); 49759566063dSJacob Faibussowitsch PetscCall(DMAddField(dm, NULL, (PetscObject)obj)); 49769566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&obj)); 4977af122d2aSMatthew G Knepley } 49783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4979af122d2aSMatthew G Knepley } 4980af122d2aSMatthew G Knepley 4981c1929be8SMatthew G. Knepley /*@ 4982bb7acecfSBarry Smith DMGetField - Return the `DMLabel` and discretization object for a given `DM` field 4983c1929be8SMatthew G. Knepley 498420f4b53cSBarry Smith Not Collective 4985c1929be8SMatthew G. Knepley 4986c1929be8SMatthew G. Knepley Input Parameters: 4987bb7acecfSBarry Smith + dm - The `DM` 4988c1929be8SMatthew G. Knepley - f - The field number 4989c1929be8SMatthew G. Knepley 499044a7f3ddSMatthew G. Knepley Output Parameters: 499120f4b53cSBarry Smith + label - The label indicating the support of the field, or `NULL` for the entire mesh (pass in `NULL` if not needed) 499220f4b53cSBarry Smith - disc - The discretization object (pass in `NULL` if not needed) 4993c1929be8SMatthew G. Knepley 499444a7f3ddSMatthew G. Knepley Level: intermediate 4995c1929be8SMatthew G. Knepley 49961cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()` 4997c1929be8SMatthew G. Knepley @*/ 4998d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetField(DM dm, PetscInt f, DMLabel *label, PetscObject *disc) 4999d71ae5a4SJacob Faibussowitsch { 5000af122d2aSMatthew G Knepley PetscFunctionBegin; 5001af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 50024f572ea9SToby Isaac PetscAssertPointer(disc, 4); 50037a8be351SBarry Smith PetscCheck((f >= 0) && (f < dm->Nf), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, dm->Nf); 500444a7f3ddSMatthew G. Knepley if (label) *label = dm->fields[f].label; 5005bb7acecfSBarry Smith if (disc) *disc = dm->fields[f].disc; 50063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5007decb47aaSMatthew G. Knepley } 5008decb47aaSMatthew G. Knepley 5009083401c6SMatthew G. Knepley /* Does not clear the DS */ 5010d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField_Internal(DM dm, PetscInt f, DMLabel label, PetscObject disc) 5011d71ae5a4SJacob Faibussowitsch { 5012083401c6SMatthew G. Knepley PetscFunctionBegin; 50139566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, f + 1)); 50149566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 50159566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 5016083401c6SMatthew G. Knepley dm->fields[f].label = label; 5017bb7acecfSBarry Smith dm->fields[f].disc = disc; 50189566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 5019835f2295SStefano Zampini PetscCall(PetscObjectReference(disc)); 50203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5021083401c6SMatthew G. Knepley } 5022083401c6SMatthew G. Knepley 5023ffeef943SBarry Smith /*@ 5024bb7acecfSBarry Smith DMSetField - Set the discretization object for a given `DM` field. Usually one would call `DMAddField()` which automatically handles 5025bb7acecfSBarry Smith the field numbering. 5026c1929be8SMatthew G. Knepley 502720f4b53cSBarry Smith Logically Collective 5028c1929be8SMatthew G. Knepley 5029c1929be8SMatthew G. Knepley Input Parameters: 5030bb7acecfSBarry Smith + dm - The `DM` 5031c1929be8SMatthew G. Knepley . f - The field number 503220f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh 5033bb7acecfSBarry Smith - disc - The discretization object 5034c1929be8SMatthew G. Knepley 503544a7f3ddSMatthew G. Knepley Level: intermediate 5036c1929be8SMatthew G. Knepley 50371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()` 5038c1929be8SMatthew G. Knepley @*/ 5039d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField(DM dm, PetscInt f, DMLabel label, PetscObject disc) 5040d71ae5a4SJacob Faibussowitsch { 5041decb47aaSMatthew G. Knepley PetscFunctionBegin; 5042decb47aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5043e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 5044bb7acecfSBarry Smith PetscValidHeader(disc, 4); 50457a8be351SBarry Smith PetscCheck(f >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be non-negative", f); 5046bb7acecfSBarry Smith PetscCall(DMSetField_Internal(dm, f, label, disc)); 5047bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, f, disc)); 50489566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 50493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 505044a7f3ddSMatthew G. Knepley } 505144a7f3ddSMatthew G. Knepley 5052ffeef943SBarry Smith /*@ 5053bb7acecfSBarry Smith DMAddField - Add a field to a `DM` object. A field is a function space defined by of a set of discretization points (geometric entities) 5054bb7acecfSBarry Smith and a discretization object that defines the function space associated with those points. 505544a7f3ddSMatthew G. Knepley 505620f4b53cSBarry Smith Logically Collective 505744a7f3ddSMatthew G. Knepley 505844a7f3ddSMatthew G. Knepley Input Parameters: 5059bb7acecfSBarry Smith + dm - The `DM` 506020f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh 5061bb7acecfSBarry Smith - disc - The discretization object 506244a7f3ddSMatthew G. Knepley 506344a7f3ddSMatthew G. Knepley Level: intermediate 506444a7f3ddSMatthew G. Knepley 5065bb7acecfSBarry Smith Notes: 5066bb7acecfSBarry Smith The label already exists or will be added to the `DM` with `DMSetLabel()`. 5067bb7acecfSBarry Smith 5068da81f932SPierre Jolivet For example, a piecewise continuous pressure field can be defined by coefficients at the cell centers of a mesh and piecewise constant functions 5069bb7acecfSBarry Smith within each cell. Thus a specific function in the space is defined by the combination of a `Vec` containing the coefficients, a `DM` defining the 5070bb7acecfSBarry Smith geometry entities, a `DMLabel` indicating a subset of those geometric entities, and a discretization object, such as a `PetscFE`. 5071bb7acecfSBarry Smith 5072ce78bad3SBarry Smith Fortran Note: 5073ce78bad3SBarry Smith Use the argument `PetscObjectCast(disc)` as the second argument 5074ce78bad3SBarry Smith 50751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLabel()`, `DMSetField()`, `DMGetField()`, `PetscFE` 507644a7f3ddSMatthew G. Knepley @*/ 5077d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddField(DM dm, DMLabel label, PetscObject disc) 5078d71ae5a4SJacob Faibussowitsch { 507944a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf; 508044a7f3ddSMatthew G. Knepley 508144a7f3ddSMatthew G. Knepley PetscFunctionBegin; 508244a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5083064a246eSJacob Faibussowitsch if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 5084bb7acecfSBarry Smith PetscValidHeader(disc, 3); 50859566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, Nf + 1)); 508644a7f3ddSMatthew G. Knepley dm->fields[Nf].label = label; 5087bb7acecfSBarry Smith dm->fields[Nf].disc = disc; 50889566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 5089835f2295SStefano Zampini PetscCall(PetscObjectReference(disc)); 5090bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, Nf, disc)); 50919566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 50923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5093af122d2aSMatthew G Knepley } 50946636e97aSMatthew G Knepley 5095e5e52638SMatthew G. Knepley /*@ 5096e0b68406SMatthew Knepley DMSetFieldAvoidTensor - Set flag to avoid defining the field on tensor cells 5097e0b68406SMatthew Knepley 509820f4b53cSBarry Smith Logically Collective 5099e0b68406SMatthew Knepley 5100e0b68406SMatthew Knepley Input Parameters: 5101bb7acecfSBarry Smith + dm - The `DM` 5102e0b68406SMatthew Knepley . f - The field index 5103bb7acecfSBarry Smith - avoidTensor - `PETSC_TRUE` to skip defining the field on tensor cells 5104e0b68406SMatthew Knepley 5105e0b68406SMatthew Knepley Level: intermediate 5106e0b68406SMatthew Knepley 51071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()` 5108e0b68406SMatthew Knepley @*/ 5109d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFieldAvoidTensor(DM dm, PetscInt f, PetscBool avoidTensor) 5110d71ae5a4SJacob Faibussowitsch { 5111e0b68406SMatthew Knepley PetscFunctionBegin; 511263a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5113e0b68406SMatthew Knepley dm->fields[f].avoidTensor = avoidTensor; 51143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5115e0b68406SMatthew Knepley } 5116e0b68406SMatthew Knepley 5117e0b68406SMatthew Knepley /*@ 5118e0b68406SMatthew Knepley DMGetFieldAvoidTensor - Get flag to avoid defining the field on tensor cells 5119e0b68406SMatthew Knepley 512020f4b53cSBarry Smith Not Collective 5121e0b68406SMatthew Knepley 5122e0b68406SMatthew Knepley Input Parameters: 5123bb7acecfSBarry Smith + dm - The `DM` 5124e0b68406SMatthew Knepley - f - The field index 5125e0b68406SMatthew Knepley 5126e0b68406SMatthew Knepley Output Parameter: 5127e0b68406SMatthew Knepley . avoidTensor - The flag to avoid defining the field on tensor cells 5128e0b68406SMatthew Knepley 5129e0b68406SMatthew Knepley Level: intermediate 5130e0b68406SMatthew Knepley 513160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`, `DMGetField()`, `DMSetFieldAvoidTensor()` 5132e0b68406SMatthew Knepley @*/ 5133d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFieldAvoidTensor(DM dm, PetscInt f, PetscBool *avoidTensor) 5134d71ae5a4SJacob Faibussowitsch { 5135e0b68406SMatthew Knepley PetscFunctionBegin; 513663a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5137e0b68406SMatthew Knepley *avoidTensor = dm->fields[f].avoidTensor; 51383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5139e0b68406SMatthew Knepley } 5140e0b68406SMatthew Knepley 5141e0b68406SMatthew Knepley /*@ 5142bb7acecfSBarry Smith DMCopyFields - Copy the discretizations for the `DM` into another `DM` 5143e5e52638SMatthew G. Knepley 514420f4b53cSBarry Smith Collective 5145e5e52638SMatthew G. Knepley 5146bb4b53efSMatthew G. Knepley Input Parameters: 5147bb4b53efSMatthew G. Knepley + dm - The `DM` 5148bb4b53efSMatthew G. Knepley . minDegree - Minimum degree for a discretization, or `PETSC_DETERMINE` for no limit 5149bb4b53efSMatthew G. Knepley - maxDegree - Maximum degree for a discretization, or `PETSC_DETERMINE` for no limit 5150e5e52638SMatthew G. Knepley 5151e5e52638SMatthew G. Knepley Output Parameter: 5152bb7acecfSBarry Smith . newdm - The `DM` 5153e5e52638SMatthew G. Knepley 5154e5e52638SMatthew G. Knepley Level: advanced 5155e5e52638SMatthew G. Knepley 51561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetField()`, `DMSetField()`, `DMAddField()`, `DMCopyDS()`, `DMGetDS()`, `DMGetCellDS()` 5157e5e52638SMatthew G. Knepley @*/ 5158bb4b53efSMatthew G. Knepley PetscErrorCode DMCopyFields(DM dm, PetscInt minDegree, PetscInt maxDegree, DM newdm) 5159d71ae5a4SJacob Faibussowitsch { 5160e5e52638SMatthew G. Knepley PetscInt Nf, f; 5161e5e52638SMatthew G. Knepley 5162e5e52638SMatthew G. Knepley PetscFunctionBegin; 51633ba16761SJacob Faibussowitsch if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS); 51649566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 51659566063dSJacob Faibussowitsch PetscCall(DMClearFields(newdm)); 5166e5e52638SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5167e5e52638SMatthew G. Knepley DMLabel label; 5168e5e52638SMatthew G. Knepley PetscObject field; 5169bb4b53efSMatthew G. Knepley PetscClassId id; 517034aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 5171e5e52638SMatthew G. Knepley 51729566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, &label, &field)); 5173bb4b53efSMatthew G. Knepley PetscCall(PetscObjectGetClassId(field, &id)); 5174bb4b53efSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 5175bb4b53efSMatthew G. Knepley PetscFE newfe; 5176bb4b53efSMatthew G. Knepley 5177bb4b53efSMatthew G. Knepley PetscCall(PetscFELimitDegree((PetscFE)field, minDegree, maxDegree, &newfe)); 5178bb4b53efSMatthew G. Knepley PetscCall(DMSetField(newdm, f, label, (PetscObject)newfe)); 5179bb4b53efSMatthew G. Knepley PetscCall(PetscFEDestroy(&newfe)); 5180bb4b53efSMatthew G. Knepley } else { 51819566063dSJacob Faibussowitsch PetscCall(DMSetField(newdm, f, label, field)); 5182bb4b53efSMatthew G. Knepley } 51839566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, f, &useCone, &useClosure)); 51849566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(newdm, f, useCone, useClosure)); 518534aa8a36SMatthew G. Knepley } 51863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 518734aa8a36SMatthew G. Knepley } 518834aa8a36SMatthew G. Knepley 518934aa8a36SMatthew G. Knepley /*@ 519034aa8a36SMatthew G. Knepley DMGetAdjacency - Returns the flags for determining variable influence 519134aa8a36SMatthew G. Knepley 519220f4b53cSBarry Smith Not Collective 519334aa8a36SMatthew G. Knepley 519434aa8a36SMatthew G. Knepley Input Parameters: 519520f4b53cSBarry Smith + dm - The `DM` object 519620f4b53cSBarry Smith - f - The field number, or `PETSC_DEFAULT` for the default adjacency 519734aa8a36SMatthew G. Knepley 5198d8d19677SJose E. Roman Output Parameters: 519934aa8a36SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 520034aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 520134aa8a36SMatthew G. Knepley 520234aa8a36SMatthew G. Knepley Level: developer 520334aa8a36SMatthew G. Knepley 520420f4b53cSBarry Smith Notes: 520520f4b53cSBarry Smith .vb 520620f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 520720f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 520820f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 520920f4b53cSBarry Smith .ve 521020f4b53cSBarry Smith Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 521120f4b53cSBarry Smith 52121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetAdjacency()`, `DMGetField()`, `DMSetField()` 521334aa8a36SMatthew G. Knepley @*/ 5214d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAdjacency(DM dm, PetscInt f, PetscBool *useCone, PetscBool *useClosure) 5215d71ae5a4SJacob Faibussowitsch { 521634aa8a36SMatthew G. Knepley PetscFunctionBegin; 521734aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 52184f572ea9SToby Isaac if (useCone) PetscAssertPointer(useCone, 3); 52194f572ea9SToby Isaac if (useClosure) PetscAssertPointer(useClosure, 4); 522034aa8a36SMatthew G. Knepley if (f < 0) { 522134aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->adjacency[0]; 522234aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->adjacency[1]; 522334aa8a36SMatthew G. Knepley } else { 522434aa8a36SMatthew G. Knepley PetscInt Nf; 522534aa8a36SMatthew G. Knepley 52269566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 52277a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 522834aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->fields[f].adjacency[0]; 522934aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->fields[f].adjacency[1]; 523034aa8a36SMatthew G. Knepley } 52313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 523234aa8a36SMatthew G. Knepley } 523334aa8a36SMatthew G. Knepley 523434aa8a36SMatthew G. Knepley /*@ 523534aa8a36SMatthew G. Knepley DMSetAdjacency - Set the flags for determining variable influence 523634aa8a36SMatthew G. Knepley 523720f4b53cSBarry Smith Not Collective 523834aa8a36SMatthew G. Knepley 523934aa8a36SMatthew G. Knepley Input Parameters: 524020f4b53cSBarry Smith + dm - The `DM` object 524134aa8a36SMatthew G. Knepley . f - The field number 524234aa8a36SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 524334aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 524434aa8a36SMatthew G. Knepley 524534aa8a36SMatthew G. Knepley Level: developer 524634aa8a36SMatthew G. Knepley 524720f4b53cSBarry Smith Notes: 524820f4b53cSBarry Smith .vb 524920f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 525020f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 525120f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 525220f4b53cSBarry Smith .ve 525320f4b53cSBarry Smith Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 525420f4b53cSBarry Smith 52551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetAdjacency()`, `DMGetField()`, `DMSetField()` 525634aa8a36SMatthew G. Knepley @*/ 5257d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAdjacency(DM dm, PetscInt f, PetscBool useCone, PetscBool useClosure) 5258d71ae5a4SJacob Faibussowitsch { 525934aa8a36SMatthew G. Knepley PetscFunctionBegin; 526034aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 526134aa8a36SMatthew G. Knepley if (f < 0) { 526234aa8a36SMatthew G. Knepley dm->adjacency[0] = useCone; 526334aa8a36SMatthew G. Knepley dm->adjacency[1] = useClosure; 526434aa8a36SMatthew G. Knepley } else { 526534aa8a36SMatthew G. Knepley PetscInt Nf; 526634aa8a36SMatthew G. Knepley 52679566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 52687a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 526934aa8a36SMatthew G. Knepley dm->fields[f].adjacency[0] = useCone; 527034aa8a36SMatthew G. Knepley dm->fields[f].adjacency[1] = useClosure; 5271e5e52638SMatthew G. Knepley } 52723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5273e5e52638SMatthew G. Knepley } 5274e5e52638SMatthew G. Knepley 5275b0441da4SMatthew G. Knepley /*@ 5276b0441da4SMatthew G. Knepley DMGetBasicAdjacency - Returns the flags for determining variable influence, using either the default or field 0 if it is defined 5277b0441da4SMatthew G. Knepley 5278b0441da4SMatthew G. Knepley Not collective 5279b0441da4SMatthew G. Knepley 5280f899ff85SJose E. Roman Input Parameter: 528120f4b53cSBarry Smith . dm - The `DM` object 5282b0441da4SMatthew G. Knepley 5283d8d19677SJose E. Roman Output Parameters: 5284b0441da4SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 5285b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5286b0441da4SMatthew G. Knepley 5287b0441da4SMatthew G. Knepley Level: developer 5288b0441da4SMatthew G. Knepley 528920f4b53cSBarry Smith Notes: 529020f4b53cSBarry Smith .vb 529120f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 529220f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 529320f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 529420f4b53cSBarry Smith .ve 529520f4b53cSBarry Smith 52961cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5297b0441da4SMatthew G. Knepley @*/ 5298d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasicAdjacency(DM dm, PetscBool *useCone, PetscBool *useClosure) 5299d71ae5a4SJacob Faibussowitsch { 5300b0441da4SMatthew G. Knepley PetscInt Nf; 5301b0441da4SMatthew G. Knepley 5302b0441da4SMatthew G. Knepley PetscFunctionBegin; 5303b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 53044f572ea9SToby Isaac if (useCone) PetscAssertPointer(useCone, 2); 53054f572ea9SToby Isaac if (useClosure) PetscAssertPointer(useClosure, 3); 53069566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5307b0441da4SMatthew G. Knepley if (!Nf) { 53089566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5309b0441da4SMatthew G. Knepley } else { 53109566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, 0, useCone, useClosure)); 5311b0441da4SMatthew G. Knepley } 53123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5313b0441da4SMatthew G. Knepley } 5314b0441da4SMatthew G. Knepley 5315b0441da4SMatthew G. Knepley /*@ 5316b0441da4SMatthew G. Knepley DMSetBasicAdjacency - Set the flags for determining variable influence, using either the default or field 0 if it is defined 5317b0441da4SMatthew G. Knepley 531820f4b53cSBarry Smith Not Collective 5319b0441da4SMatthew G. Knepley 5320b0441da4SMatthew G. Knepley Input Parameters: 532120f4b53cSBarry Smith + dm - The `DM` object 5322b0441da4SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 5323b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5324b0441da4SMatthew G. Knepley 5325b0441da4SMatthew G. Knepley Level: developer 5326b0441da4SMatthew G. Knepley 532720f4b53cSBarry Smith Notes: 532820f4b53cSBarry Smith .vb 532920f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 533020f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 533120f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 533220f4b53cSBarry Smith .ve 533320f4b53cSBarry Smith 53341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5335b0441da4SMatthew G. Knepley @*/ 5336d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetBasicAdjacency(DM dm, PetscBool useCone, PetscBool useClosure) 5337d71ae5a4SJacob Faibussowitsch { 5338b0441da4SMatthew G. Knepley PetscInt Nf; 5339b0441da4SMatthew G. Knepley 5340b0441da4SMatthew G. Knepley PetscFunctionBegin; 5341b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 53429566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5343b0441da4SMatthew G. Knepley if (!Nf) { 53449566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5345b0441da4SMatthew G. Knepley } else { 53469566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, 0, useCone, useClosure)); 5347e5e52638SMatthew G. Knepley } 53483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5349e5e52638SMatthew G. Knepley } 5350e5e52638SMatthew G. Knepley 5351d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompleteBCLabels_Internal(DM dm) 5352d71ae5a4SJacob Faibussowitsch { 5353799db056SMatthew G. Knepley DM plex; 5354799db056SMatthew G. Knepley DMLabel *labels, *glabels; 5355799db056SMatthew G. Knepley const char **names; 5356799db056SMatthew G. Knepley char *sendNames, *recvNames; 5357799db056SMatthew G. Knepley PetscInt Nds, s, maxLabels = 0, maxLen = 0, gmaxLen, Nl = 0, gNl, l, gl, m; 5358799db056SMatthew G. Knepley size_t len; 5359799db056SMatthew G. Knepley MPI_Comm comm; 5360799db056SMatthew G. Knepley PetscMPIInt rank, size, p, *counts, *displs; 5361783e2ec8SMatthew G. Knepley 5362783e2ec8SMatthew G. Knepley PetscFunctionBegin; 5363799db056SMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 5364799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(comm, &size)); 5365799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5366799db056SMatthew G. Knepley PetscCall(DMGetNumDS(dm, &Nds)); 5367799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5368799db056SMatthew G. Knepley PetscDS dsBC; 5369799db056SMatthew G. Knepley PetscInt numBd; 5370799db056SMatthew G. Knepley 537107218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL)); 5372799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5373799db056SMatthew G. Knepley maxLabels += numBd; 5374799db056SMatthew G. Knepley } 5375799db056SMatthew G. Knepley PetscCall(PetscCalloc1(maxLabels, &labels)); 5376799db056SMatthew G. Knepley /* Get list of labels to be completed */ 5377799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5378799db056SMatthew G. Knepley PetscDS dsBC; 5379799db056SMatthew G. Knepley PetscInt numBd, bd; 5380799db056SMatthew G. Knepley 538107218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL)); 5382799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5383799db056SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 5384799db056SMatthew G. Knepley DMLabel label; 5385799db056SMatthew G. Knepley PetscInt field; 5386799db056SMatthew G. Knepley PetscObject obj; 5387799db056SMatthew G. Knepley PetscClassId id; 5388799db056SMatthew G. Knepley 5389799db056SMatthew G. Knepley PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 53909566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 53919566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 5392fa74d514SMatthew G. Knepley if (id != PETSCFE_CLASSID || !label) continue; 53939371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 53949371c9d4SSatish Balay if (labels[l] == label) break; 5395799db056SMatthew G. Knepley if (l == Nl) labels[Nl++] = label; 5396783e2ec8SMatthew G. Knepley } 5397799db056SMatthew G. Knepley } 5398799db056SMatthew G. Knepley /* Get label names */ 5399799db056SMatthew G. Knepley PetscCall(PetscMalloc1(Nl, &names)); 5400799db056SMatthew G. Knepley for (l = 0; l < Nl; ++l) PetscCall(PetscObjectGetName((PetscObject)labels[l], &names[l])); 54019371c9d4SSatish Balay for (l = 0; l < Nl; ++l) { 54029371c9d4SSatish Balay PetscCall(PetscStrlen(names[l], &len)); 54039371c9d4SSatish Balay maxLen = PetscMax(maxLen, (PetscInt)len + 2); 54049371c9d4SSatish Balay } 5405799db056SMatthew G. Knepley PetscCall(PetscFree(labels)); 5406462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&maxLen, &gmaxLen, 1, MPIU_INT, MPI_MAX, comm)); 5407799db056SMatthew G. Knepley PetscCall(PetscCalloc1(Nl * gmaxLen, &sendNames)); 5408c6a7a370SJeremy L Thompson for (l = 0; l < Nl; ++l) PetscCall(PetscStrncpy(&sendNames[gmaxLen * l], names[l], gmaxLen)); 5409799db056SMatthew G. Knepley PetscCall(PetscFree(names)); 5410799db056SMatthew G. Knepley /* Put all names on all processes */ 5411799db056SMatthew G. Knepley PetscCall(PetscCalloc2(size, &counts, size + 1, &displs)); 5412799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgather(&Nl, 1, MPI_INT, counts, 1, MPI_INT, comm)); 5413799db056SMatthew G. Knepley for (p = 0; p < size; ++p) displs[p + 1] = displs[p] + counts[p]; 5414799db056SMatthew G. Knepley gNl = displs[size]; 54159371c9d4SSatish Balay for (p = 0; p < size; ++p) { 54169371c9d4SSatish Balay counts[p] *= gmaxLen; 54179371c9d4SSatish Balay displs[p] *= gmaxLen; 54189371c9d4SSatish Balay } 5419799db056SMatthew G. Knepley PetscCall(PetscCalloc2(gNl * gmaxLen, &recvNames, gNl, &glabels)); 5420799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgatherv(sendNames, counts[rank], MPI_CHAR, recvNames, counts, displs, MPI_CHAR, comm)); 5421799db056SMatthew G. Knepley PetscCall(PetscFree2(counts, displs)); 5422799db056SMatthew G. Knepley PetscCall(PetscFree(sendNames)); 5423799db056SMatthew G. Knepley for (l = 0, gl = 0; l < gNl; ++l) { 5424799db056SMatthew G. Knepley PetscCall(DMGetLabel(dm, &recvNames[l * gmaxLen], &glabels[gl])); 5425799db056SMatthew G. Knepley PetscCheck(glabels[gl], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Label %s missing on rank %d", &recvNames[l * gmaxLen], rank); 54269371c9d4SSatish Balay for (m = 0; m < gl; ++m) 54275d6b2bfcSJames Wright if (glabels[m] == glabels[gl]) goto next_label; 54289566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 5429799db056SMatthew G. Knepley PetscCall(DMPlexLabelComplete(plex, glabels[gl])); 54309566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 5431799db056SMatthew G. Knepley ++gl; 54325d6b2bfcSJames Wright next_label: 54335d6b2bfcSJames Wright continue; 5434783e2ec8SMatthew G. Knepley } 5435799db056SMatthew G. Knepley PetscCall(PetscFree2(recvNames, glabels)); 54363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5437783e2ec8SMatthew G. Knepley } 5438783e2ec8SMatthew G. Knepley 5439d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDSEnlarge_Static(DM dm, PetscInt NdsNew) 5440d71ae5a4SJacob Faibussowitsch { 5441e5e52638SMatthew G. Knepley DMSpace *tmpd; 5442e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5443e5e52638SMatthew G. Knepley 5444e5e52638SMatthew G. Knepley PetscFunctionBegin; 54453ba16761SJacob Faibussowitsch if (Nds >= NdsNew) PetscFunctionReturn(PETSC_SUCCESS); 54469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NdsNew, &tmpd)); 5447e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) tmpd[s] = dm->probs[s]; 54489371c9d4SSatish Balay for (s = Nds; s < NdsNew; ++s) { 54499371c9d4SSatish Balay tmpd[s].ds = NULL; 54509371c9d4SSatish Balay tmpd[s].label = NULL; 54519371c9d4SSatish Balay tmpd[s].fields = NULL; 54529371c9d4SSatish Balay } 54539566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5454e5e52638SMatthew G. Knepley dm->Nds = NdsNew; 5455e5e52638SMatthew G. Knepley dm->probs = tmpd; 54563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5457e5e52638SMatthew G. Knepley } 5458e5e52638SMatthew G. Knepley 5459e5e52638SMatthew G. Knepley /*@ 546020f4b53cSBarry Smith DMGetNumDS - Get the number of discrete systems in the `DM` 5461e5e52638SMatthew G. Knepley 546220f4b53cSBarry Smith Not Collective 5463e5e52638SMatthew G. Knepley 5464e5e52638SMatthew G. Knepley Input Parameter: 546520f4b53cSBarry Smith . dm - The `DM` 5466e5e52638SMatthew G. Knepley 5467e5e52638SMatthew G. Knepley Output Parameter: 546820f4b53cSBarry Smith . Nds - The number of `PetscDS` objects 5469e5e52638SMatthew G. Knepley 5470e5e52638SMatthew G. Knepley Level: intermediate 5471e5e52638SMatthew G. Knepley 54721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMGetCellDS()` 5473e5e52638SMatthew G. Knepley @*/ 5474d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumDS(DM dm, PetscInt *Nds) 5475d71ae5a4SJacob Faibussowitsch { 5476e5e52638SMatthew G. Knepley PetscFunctionBegin; 5477e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 54784f572ea9SToby Isaac PetscAssertPointer(Nds, 2); 5479e5e52638SMatthew G. Knepley *Nds = dm->Nds; 54803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5481e5e52638SMatthew G. Knepley } 5482e5e52638SMatthew G. Knepley 5483e5e52638SMatthew G. Knepley /*@ 548420f4b53cSBarry Smith DMClearDS - Remove all discrete systems from the `DM` 5485e5e52638SMatthew G. Knepley 548620f4b53cSBarry Smith Logically Collective 5487e5e52638SMatthew G. Knepley 5488e5e52638SMatthew G. Knepley Input Parameter: 548920f4b53cSBarry Smith . dm - The `DM` 5490e5e52638SMatthew G. Knepley 5491e5e52638SMatthew G. Knepley Level: intermediate 5492e5e52638SMatthew G. Knepley 54931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumDS()`, `DMGetDS()`, `DMSetField()` 5494e5e52638SMatthew G. Knepley @*/ 5495d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearDS(DM dm) 5496d71ae5a4SJacob Faibussowitsch { 5497e5e52638SMatthew G. Knepley PetscInt s; 5498e5e52638SMatthew G. Knepley 5499e5e52638SMatthew G. Knepley PetscFunctionBegin; 5500e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5501e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 55029566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 550307218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[s].dsIn)); 55049566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[s].label)); 55059566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[s].fields)); 5506e5e52638SMatthew G. Knepley } 55079566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5508e5e52638SMatthew G. Knepley dm->probs = NULL; 5509e5e52638SMatthew G. Knepley dm->Nds = 0; 55103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5511e5e52638SMatthew G. Knepley } 5512e5e52638SMatthew G. Knepley 5513e5e52638SMatthew G. Knepley /*@ 551420f4b53cSBarry Smith DMGetDS - Get the default `PetscDS` 5515e5e52638SMatthew G. Knepley 551620f4b53cSBarry Smith Not Collective 5517e5e52638SMatthew G. Knepley 5518e5e52638SMatthew G. Knepley Input Parameter: 551920f4b53cSBarry Smith . dm - The `DM` 5520e5e52638SMatthew G. Knepley 5521e5e52638SMatthew G. Knepley Output Parameter: 552207218a29SMatthew G. Knepley . ds - The default `PetscDS` 5523e5e52638SMatthew G. Knepley 5524e5e52638SMatthew G. Knepley Level: intermediate 5525e5e52638SMatthew G. Knepley 5526ce78bad3SBarry Smith Note: 5527ce78bad3SBarry Smith The `ds` is owned by the `dm` and should not be destroyed directly. 5528ce78bad3SBarry Smith 55291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCellDS()`, `DMGetRegionDS()` 5530e5e52638SMatthew G. Knepley @*/ 553107218a29SMatthew G. Knepley PetscErrorCode DMGetDS(DM dm, PetscDS *ds) 5532d71ae5a4SJacob Faibussowitsch { 5533e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5534e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 55354f572ea9SToby Isaac PetscAssertPointer(ds, 2); 553607218a29SMatthew G. Knepley PetscCheck(dm->Nds > 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Need to call DMCreateDS() before calling DMGetDS()"); 553707218a29SMatthew G. Knepley *ds = dm->probs[0].ds; 55383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5539e5e52638SMatthew G. Knepley } 5540e5e52638SMatthew G. Knepley 5541e5e52638SMatthew G. Knepley /*@ 554220f4b53cSBarry Smith DMGetCellDS - Get the `PetscDS` defined on a given cell 5543e5e52638SMatthew G. Knepley 554420f4b53cSBarry Smith Not Collective 5545e5e52638SMatthew G. Knepley 5546e5e52638SMatthew G. Knepley Input Parameters: 554720f4b53cSBarry Smith + dm - The `DM` 554820f4b53cSBarry Smith - point - Cell for the `PetscDS` 5549e5e52638SMatthew G. Knepley 555007218a29SMatthew G. Knepley Output Parameters: 555107218a29SMatthew G. Knepley + ds - The `PetscDS` defined on the given cell 555207218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or NULL if the same ds 5553e5e52638SMatthew G. Knepley 5554e5e52638SMatthew G. Knepley Level: developer 5555e5e52638SMatthew G. Knepley 55561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMSetRegionDS()` 5557e5e52638SMatthew G. Knepley @*/ 555807218a29SMatthew G. Knepley PetscErrorCode DMGetCellDS(DM dm, PetscInt point, PetscDS *ds, PetscDS *dsIn) 5559d71ae5a4SJacob Faibussowitsch { 556007218a29SMatthew G. Knepley PetscDS dsDef = NULL; 5561e5e52638SMatthew G. Knepley PetscInt s; 5562e5e52638SMatthew G. Knepley 5563e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5564e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 55654f572ea9SToby Isaac if (ds) PetscAssertPointer(ds, 3); 55664f572ea9SToby Isaac if (dsIn) PetscAssertPointer(dsIn, 4); 556763a3b9bcSJacob Faibussowitsch PetscCheck(point >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Mesh point cannot be negative: %" PetscInt_FMT, point); 556807218a29SMatthew G. Knepley if (ds) *ds = NULL; 556907218a29SMatthew G. Knepley if (dsIn) *dsIn = NULL; 5570e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 5571e5e52638SMatthew G. Knepley PetscInt val; 5572e5e52638SMatthew G. Knepley 55739371c9d4SSatish Balay if (!dm->probs[s].label) { 557407218a29SMatthew G. Knepley dsDef = dm->probs[s].ds; 55759371c9d4SSatish Balay } else { 55769566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(dm->probs[s].label, point, &val)); 55779371c9d4SSatish Balay if (val >= 0) { 557807218a29SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 557907218a29SMatthew G. Knepley if (dsIn) *dsIn = dm->probs[s].dsIn; 55809371c9d4SSatish Balay break; 55819371c9d4SSatish Balay } 5582e5e52638SMatthew G. Knepley } 5583e5e52638SMatthew G. Knepley } 558407218a29SMatthew G. Knepley if (ds && !*ds) *ds = dsDef; 55853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5586e5e52638SMatthew G. Knepley } 5587e5e52638SMatthew G. Knepley 5588e5e52638SMatthew G. Knepley /*@ 558920f4b53cSBarry Smith DMGetRegionDS - Get the `PetscDS` for a given mesh region, defined by a `DMLabel` 5590e5e52638SMatthew G. Knepley 559120f4b53cSBarry Smith Not Collective 5592e5e52638SMatthew G. Knepley 5593e5e52638SMatthew G. Knepley Input Parameters: 559420f4b53cSBarry Smith + dm - The `DM` 559520f4b53cSBarry Smith - label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh 5596e5e52638SMatthew G. Knepley 5597b3cf3223SMatthew G. Knepley Output Parameters: 559820f4b53cSBarry Smith + fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` 559907218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` 560007218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input in the given region, or `NULL` 5601e5e52638SMatthew G. Knepley 5602e5e52638SMatthew G. Knepley Level: advanced 5603e5e52638SMatthew G. Knepley 560420f4b53cSBarry Smith Note: 560520f4b53cSBarry Smith If a non-`NULL` label is given, but there is no `PetscDS` on that specific label, 560620f4b53cSBarry Smith the `PetscDS` for the full domain (if present) is returned. Returns with 560707218a29SMatthew G. Knepley fields = `NULL` and ds = `NULL` if there is no `PetscDS` for the full domain. 560820f4b53cSBarry Smith 56091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5610e5e52638SMatthew G. Knepley @*/ 561107218a29SMatthew G. Knepley PetscErrorCode DMGetRegionDS(DM dm, DMLabel label, IS *fields, PetscDS *ds, PetscDS *dsIn) 5612d71ae5a4SJacob Faibussowitsch { 5613e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5614e5e52638SMatthew G. Knepley 5615e5e52638SMatthew G. Knepley PetscFunctionBegin; 5616e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5617e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 56189371c9d4SSatish Balay if (fields) { 56194f572ea9SToby Isaac PetscAssertPointer(fields, 3); 56209371c9d4SSatish Balay *fields = NULL; 56219371c9d4SSatish Balay } 56229371c9d4SSatish Balay if (ds) { 56234f572ea9SToby Isaac PetscAssertPointer(ds, 4); 56249371c9d4SSatish Balay *ds = NULL; 56259371c9d4SSatish Balay } 562607218a29SMatthew G. Knepley if (dsIn) { 56274f572ea9SToby Isaac PetscAssertPointer(dsIn, 5); 562807218a29SMatthew G. Knepley *dsIn = NULL; 562907218a29SMatthew G. Knepley } 5630e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5631154ca461SJed Brown if (dm->probs[s].label == label || !dm->probs[s].label) { 5632b3cf3223SMatthew G. Knepley if (fields) *fields = dm->probs[s].fields; 5633b3cf3223SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 563407218a29SMatthew G. Knepley if (dsIn) *dsIn = dm->probs[s].dsIn; 56353ba16761SJacob Faibussowitsch if (dm->probs[s].label) PetscFunctionReturn(PETSC_SUCCESS); 5636b3cf3223SMatthew G. Knepley } 5637e5e52638SMatthew G. Knepley } 56383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5639e5e52638SMatthew G. Knepley } 5640e5e52638SMatthew G. Knepley 5641e5e52638SMatthew G. Knepley /*@ 5642bb7acecfSBarry Smith DMSetRegionDS - Set the `PetscDS` for a given mesh region, defined by a `DMLabel` 5643083401c6SMatthew G. Knepley 564420f4b53cSBarry Smith Collective 5645083401c6SMatthew G. Knepley 5646083401c6SMatthew G. Knepley Input Parameters: 5647bb7acecfSBarry Smith + dm - The `DM` 564820f4b53cSBarry Smith . label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh 564907218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` for all fields 565007218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region 565107218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS` 5652083401c6SMatthew G. Knepley 565320f4b53cSBarry Smith Level: advanced 565420f4b53cSBarry Smith 5655bb7acecfSBarry Smith Note: 5656bb7acecfSBarry Smith If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`. If the `PetscDS` is replaced, 5657083401c6SMatthew G. Knepley the fields argument is ignored. 5658083401c6SMatthew G. Knepley 56591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionNumDS()`, `DMGetDS()`, `DMGetCellDS()` 5660083401c6SMatthew G. Knepley @*/ 566107218a29SMatthew G. Knepley PetscErrorCode DMSetRegionDS(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 5662d71ae5a4SJacob Faibussowitsch { 5663083401c6SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5664083401c6SMatthew G. Knepley 5665083401c6SMatthew G. Knepley PetscFunctionBegin; 5666083401c6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5667083401c6SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 566807218a29SMatthew G. Knepley if (fields) PetscValidHeaderSpecific(fields, IS_CLASSID, 3); 5669064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 4); 567007218a29SMatthew G. Knepley if (dsIn) PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 5); 5671083401c6SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5672083401c6SMatthew G. Knepley if (dm->probs[s].label == label) { 56739566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 567407218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[s].dsIn)); 5675083401c6SMatthew G. Knepley dm->probs[s].ds = ds; 567607218a29SMatthew G. Knepley dm->probs[s].dsIn = dsIn; 56773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5678083401c6SMatthew G. Knepley } 5679083401c6SMatthew G. Knepley } 56809566063dSJacob Faibussowitsch PetscCall(DMDSEnlarge_Static(dm, Nds + 1)); 56819566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 56829566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 56839566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 568407218a29SMatthew G. Knepley PetscCall(PetscObjectReference((PetscObject)dsIn)); 5685083401c6SMatthew G. Knepley if (!label) { 5686083401c6SMatthew G. Knepley /* Put the NULL label at the front, so it is returned as the default */ 5687083401c6SMatthew G. Knepley for (s = Nds - 1; s >= 0; --s) dm->probs[s + 1] = dm->probs[s]; 5688083401c6SMatthew G. Knepley Nds = 0; 5689083401c6SMatthew G. Knepley } 5690083401c6SMatthew G. Knepley dm->probs[Nds].label = label; 5691083401c6SMatthew G. Knepley dm->probs[Nds].fields = fields; 5692083401c6SMatthew G. Knepley dm->probs[Nds].ds = ds; 569307218a29SMatthew G. Knepley dm->probs[Nds].dsIn = dsIn; 56943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5695083401c6SMatthew G. Knepley } 5696083401c6SMatthew G. Knepley 5697083401c6SMatthew G. Knepley /*@ 569820f4b53cSBarry Smith DMGetRegionNumDS - Get the `PetscDS` for a given mesh region, defined by the region number 5699e5e52638SMatthew G. Knepley 570020f4b53cSBarry Smith Not Collective 5701e5e52638SMatthew G. Knepley 5702e5e52638SMatthew G. Knepley Input Parameters: 570320f4b53cSBarry Smith + dm - The `DM` 5704e5e52638SMatthew G. Knepley - num - The region number, in [0, Nds) 5705e5e52638SMatthew G. Knepley 5706e5e52638SMatthew G. Knepley Output Parameters: 570720f4b53cSBarry Smith + label - The region label, or `NULL` 570820f4b53cSBarry Smith . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` 570907218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` 571007218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input in the given region, or `NULL` 5711e5e52638SMatthew G. Knepley 5712e5e52638SMatthew G. Knepley Level: advanced 5713e5e52638SMatthew G. Knepley 57141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5715e5e52638SMatthew G. Knepley @*/ 571607218a29SMatthew G. Knepley PetscErrorCode DMGetRegionNumDS(DM dm, PetscInt num, DMLabel *label, IS *fields, PetscDS *ds, PetscDS *dsIn) 5717d71ae5a4SJacob Faibussowitsch { 5718e5e52638SMatthew G. Knepley PetscInt Nds; 5719e5e52638SMatthew G. Knepley 5720e5e52638SMatthew G. Knepley PetscFunctionBegin; 5721e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 57229566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 572363a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 5724e5e52638SMatthew G. Knepley if (label) { 57254f572ea9SToby Isaac PetscAssertPointer(label, 3); 5726e5e52638SMatthew G. Knepley *label = dm->probs[num].label; 5727e5e52638SMatthew G. Knepley } 5728b3cf3223SMatthew G. Knepley if (fields) { 57294f572ea9SToby Isaac PetscAssertPointer(fields, 4); 5730b3cf3223SMatthew G. Knepley *fields = dm->probs[num].fields; 5731b3cf3223SMatthew G. Knepley } 5732e5e52638SMatthew G. Knepley if (ds) { 57334f572ea9SToby Isaac PetscAssertPointer(ds, 5); 5734e5e52638SMatthew G. Knepley *ds = dm->probs[num].ds; 5735e5e52638SMatthew G. Knepley } 573607218a29SMatthew G. Knepley if (dsIn) { 57374f572ea9SToby Isaac PetscAssertPointer(dsIn, 6); 573807218a29SMatthew G. Knepley *dsIn = dm->probs[num].dsIn; 573907218a29SMatthew G. Knepley } 57403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5741e5e52638SMatthew G. Knepley } 5742e5e52638SMatthew G. Knepley 5743e5e52638SMatthew G. Knepley /*@ 574420f4b53cSBarry Smith DMSetRegionNumDS - Set the `PetscDS` for a given mesh region, defined by the region number 5745e5e52638SMatthew G. Knepley 574620f4b53cSBarry Smith Not Collective 5747e5e52638SMatthew G. Knepley 5748e5e52638SMatthew G. Knepley Input Parameters: 574920f4b53cSBarry Smith + dm - The `DM` 5750083401c6SMatthew G. Knepley . num - The region number, in [0, Nds) 575120f4b53cSBarry Smith . label - The region label, or `NULL` 575207218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` to prevent setting 575307218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` to prevent setting 575407218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS` 5755e5e52638SMatthew G. Knepley 5756e5e52638SMatthew G. Knepley Level: advanced 5757e5e52638SMatthew G. Knepley 57581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5759e5e52638SMatthew G. Knepley @*/ 576007218a29SMatthew G. Knepley PetscErrorCode DMSetRegionNumDS(DM dm, PetscInt num, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 5761d71ae5a4SJacob Faibussowitsch { 5762083401c6SMatthew G. Knepley PetscInt Nds; 5763e5e52638SMatthew G. Knepley 5764e5e52638SMatthew G. Knepley PetscFunctionBegin; 5765e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5766ad540459SPierre Jolivet if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 57679566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 576863a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 57699566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 57709566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[num].label)); 5771083401c6SMatthew G. Knepley dm->probs[num].label = label; 5772083401c6SMatthew G. Knepley if (fields) { 5773083401c6SMatthew G. Knepley PetscValidHeaderSpecific(fields, IS_CLASSID, 4); 57749566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 57759566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[num].fields)); 5776083401c6SMatthew G. Knepley dm->probs[num].fields = fields; 5777e5e52638SMatthew G. Knepley } 5778083401c6SMatthew G. Knepley if (ds) { 5779083401c6SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 5); 57809566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 57819566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[num].ds)); 5782083401c6SMatthew G. Knepley dm->probs[num].ds = ds; 5783083401c6SMatthew G. Knepley } 578407218a29SMatthew G. Knepley if (dsIn) { 578507218a29SMatthew G. Knepley PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 6); 578607218a29SMatthew G. Knepley PetscCall(PetscObjectReference((PetscObject)dsIn)); 578707218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[num].dsIn)); 578807218a29SMatthew G. Knepley dm->probs[num].dsIn = dsIn; 578907218a29SMatthew G. Knepley } 57903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5791e5e52638SMatthew G. Knepley } 5792e5e52638SMatthew G. Knepley 5793e5e52638SMatthew G. Knepley /*@ 579420f4b53cSBarry Smith DMFindRegionNum - Find the region number for a given `PetscDS`, or -1 if it is not found. 57951d3af9e0SMatthew G. Knepley 579620f4b53cSBarry Smith Not Collective 57971d3af9e0SMatthew G. Knepley 57981d3af9e0SMatthew G. Knepley Input Parameters: 579920f4b53cSBarry Smith + dm - The `DM` 580020f4b53cSBarry Smith - ds - The `PetscDS` defined on the given region 58011d3af9e0SMatthew G. Knepley 58021d3af9e0SMatthew G. Knepley Output Parameter: 58031d3af9e0SMatthew G. Knepley . num - The region number, in [0, Nds), or -1 if not found 58041d3af9e0SMatthew G. Knepley 58051d3af9e0SMatthew G. Knepley Level: advanced 58061d3af9e0SMatthew G. Knepley 58071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 58081d3af9e0SMatthew G. Knepley @*/ 5809d71ae5a4SJacob Faibussowitsch PetscErrorCode DMFindRegionNum(DM dm, PetscDS ds, PetscInt *num) 5810d71ae5a4SJacob Faibussowitsch { 58111d3af9e0SMatthew G. Knepley PetscInt Nds, n; 58121d3af9e0SMatthew G. Knepley 58131d3af9e0SMatthew G. Knepley PetscFunctionBegin; 58141d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 58151d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 2); 58164f572ea9SToby Isaac PetscAssertPointer(num, 3); 58179566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 58189371c9d4SSatish Balay for (n = 0; n < Nds; ++n) 58199371c9d4SSatish Balay if (ds == dm->probs[n].ds) break; 58201d3af9e0SMatthew G. Knepley if (n >= Nds) *num = -1; 58211d3af9e0SMatthew G. Knepley else *num = n; 58223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58231d3af9e0SMatthew G. Knepley } 58241d3af9e0SMatthew G. Knepley 5825cc4c1da9SBarry Smith /*@ 5826bb7acecfSBarry Smith DMCreateFEDefault - Create a `PetscFE` based on the celltype for the mesh 58272df84da0SMatthew G. Knepley 582820f4b53cSBarry Smith Not Collective 58292df84da0SMatthew G. Knepley 5830f1a722f8SMatthew G. Knepley Input Parameters: 5831bb7acecfSBarry Smith + dm - The `DM` 58322df84da0SMatthew G. Knepley . Nc - The number of components for the field 583320f4b53cSBarry Smith . prefix - The options prefix for the output `PetscFE`, or `NULL` 5834bb7acecfSBarry Smith - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree 58352df84da0SMatthew G. Knepley 58362df84da0SMatthew G. Knepley Output Parameter: 5837bb7acecfSBarry Smith . fem - The `PetscFE` 58382df84da0SMatthew G. Knepley 583920f4b53cSBarry Smith Level: intermediate 584020f4b53cSBarry Smith 5841bb7acecfSBarry Smith Note: 5842bb7acecfSBarry Smith This is a convenience method that just calls `PetscFECreateByCell()` underneath. 58432df84da0SMatthew G. Knepley 58441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscFECreateByCell()`, `DMAddField()`, `DMCreateDS()`, `DMGetCellDS()`, `DMGetRegionDS()` 58452df84da0SMatthew G. Knepley @*/ 5846d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFEDefault(DM dm, PetscInt Nc, const char prefix[], PetscInt qorder, PetscFE *fem) 5847d71ae5a4SJacob Faibussowitsch { 58482df84da0SMatthew G. Knepley DMPolytopeType ct; 58492df84da0SMatthew G. Knepley PetscInt dim, cStart; 58502df84da0SMatthew G. Knepley 58512df84da0SMatthew G. Knepley PetscFunctionBegin; 58522df84da0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 58532df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 2); 58544f572ea9SToby Isaac if (prefix) PetscAssertPointer(prefix, 3); 58552df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, qorder, 4); 58564f572ea9SToby Isaac PetscAssertPointer(fem, 5); 58579566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 58589566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 58599566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 58609566063dSJacob Faibussowitsch PetscCall(PetscFECreateByCell(PETSC_COMM_SELF, dim, Nc, ct, prefix, qorder, fem)); 58613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58622df84da0SMatthew G. Knepley } 58632df84da0SMatthew G. Knepley 58641d3af9e0SMatthew G. Knepley /*@ 5865bb7acecfSBarry Smith DMCreateDS - Create the discrete systems for the `DM` based upon the fields added to the `DM` 5866e5e52638SMatthew G. Knepley 586720f4b53cSBarry Smith Collective 5868e5e52638SMatthew G. Knepley 5869e5e52638SMatthew G. Knepley Input Parameter: 5870bb7acecfSBarry Smith . dm - The `DM` 5871e5e52638SMatthew G. Knepley 587220f4b53cSBarry Smith Options Database Key: 5873bb7acecfSBarry Smith . -dm_petscds_view - View all the `PetscDS` objects in this `DM` 587445480ffeSMatthew G. Knepley 587520f4b53cSBarry Smith Level: intermediate 587620f4b53cSBarry Smith 5877ce78bad3SBarry Smith Developer Note: 5878ce78bad3SBarry Smith The name of this function is wrong. Create functions always return the created object as one of the arguments. 5879ce78bad3SBarry Smith 58801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetField`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 5881e5e52638SMatthew G. Knepley @*/ 5882d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDS(DM dm) 5883d71ae5a4SJacob Faibussowitsch { 5884e5e52638SMatthew G. Knepley MPI_Comm comm; 5885083401c6SMatthew G. Knepley PetscDS dsDef; 5886083401c6SMatthew G. Knepley DMLabel *labelSet; 5887f9244615SMatthew G. Knepley PetscInt dE, Nf = dm->Nf, f, s, Nl, l, Ndef, k; 5888f9244615SMatthew G. Knepley PetscBool doSetup = PETSC_TRUE, flg; 5889e5e52638SMatthew G. Knepley 5890e5e52638SMatthew G. Knepley PetscFunctionBegin; 5891e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 58923ba16761SJacob Faibussowitsch if (!dm->fields) PetscFunctionReturn(PETSC_SUCCESS); 58939566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 58949566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dE)); 5895083401c6SMatthew G. Knepley /* Determine how many regions we have */ 58969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nf, &labelSet)); 5897083401c6SMatthew G. Knepley Nl = 0; 5898083401c6SMatthew G. Knepley Ndef = 0; 5899083401c6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5900083401c6SMatthew G. Knepley DMLabel label = dm->fields[f].label; 5901083401c6SMatthew G. Knepley PetscInt l; 5902083401c6SMatthew G. Knepley 5903f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 5904f918ec44SMatthew G. Knepley /* Move CEED context to discretizations */ 5905f918ec44SMatthew G. Knepley { 5906f918ec44SMatthew G. Knepley PetscClassId id; 5907f918ec44SMatthew G. Knepley 59089566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(dm->fields[f].disc, &id)); 5909f918ec44SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 5910f918ec44SMatthew G. Knepley Ceed ceed; 5911f918ec44SMatthew G. Knepley 59129566063dSJacob Faibussowitsch PetscCall(DMGetCeed(dm, &ceed)); 59139566063dSJacob Faibussowitsch PetscCall(PetscFESetCeed((PetscFE)dm->fields[f].disc, ceed)); 5914f918ec44SMatthew G. Knepley } 5915f918ec44SMatthew G. Knepley } 5916f918ec44SMatthew G. Knepley #endif 59179371c9d4SSatish Balay if (!label) { 59189371c9d4SSatish Balay ++Ndef; 59199371c9d4SSatish Balay continue; 59209371c9d4SSatish Balay } 59219371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 59229371c9d4SSatish Balay if (label == labelSet[l]) break; 5923083401c6SMatthew G. Knepley if (l < Nl) continue; 5924083401c6SMatthew G. Knepley labelSet[Nl++] = label; 5925083401c6SMatthew G. Knepley } 5926083401c6SMatthew G. Knepley /* Create default DS if there are no labels to intersect with */ 592707218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL)); 5928083401c6SMatthew G. Knepley if (!dsDef && Ndef && !Nl) { 5929b3cf3223SMatthew G. Knepley IS fields; 5930b3cf3223SMatthew G. Knepley PetscInt *fld, nf; 5931b3cf3223SMatthew G. Knepley 59329371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59339371c9d4SSatish Balay if (!dm->fields[f].label) ++nf; 59347a8be351SBarry Smith PetscCheck(nf, comm, PETSC_ERR_PLIB, "All fields have labels, but we are trying to create a default DS"); 59359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 59369371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59379371c9d4SSatish Balay if (!dm->fields[f].label) fld[nf++] = f; 59389566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 59399566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 59409566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 59419566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 594288f0c812SMatthew G. Knepley 59439566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 594407218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, NULL, fields, dsDef, NULL)); 59459566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 59469566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fields)); 59472df9ee95SMatthew G. Knepley } 594807218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL)); 59499566063dSJacob Faibussowitsch if (dsDef) PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 5950083401c6SMatthew G. Knepley /* Intersect labels with default fields */ 5951083401c6SMatthew G. Knepley if (Ndef && Nl) { 59520122748bSMatthew G. Knepley DM plex; 5953083401c6SMatthew G. Knepley DMLabel cellLabel; 5954083401c6SMatthew G. Knepley IS fieldIS, allcellIS, defcellIS = NULL; 5955083401c6SMatthew G. Knepley PetscInt *fields; 5956083401c6SMatthew G. Knepley const PetscInt *cells; 5957083401c6SMatthew G. Knepley PetscInt depth, nf = 0, n, c; 59580122748bSMatthew G. Knepley 59599566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 59609566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(plex, &depth)); 59619566063dSJacob Faibussowitsch PetscCall(DMGetStratumIS(plex, "dim", depth, &allcellIS)); 59629566063dSJacob Faibussowitsch if (!allcellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &allcellIS)); 59635fedec97SMatthew G. Knepley /* TODO This looks like it only works for one label */ 5964083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 5965083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 5966083401c6SMatthew G. Knepley IS pointIS; 5967083401c6SMatthew G. Knepley 59689566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 59699566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, 1, &pointIS)); 59709566063dSJacob Faibussowitsch PetscCall(ISDifference(allcellIS, pointIS, &defcellIS)); 59719566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 5972083401c6SMatthew G. Knepley } 59739566063dSJacob Faibussowitsch PetscCall(ISDestroy(&allcellIS)); 5974083401c6SMatthew G. Knepley 59759566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "defaultCells", &cellLabel)); 59769566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(defcellIS, &n)); 59779566063dSJacob Faibussowitsch PetscCall(ISGetIndices(defcellIS, &cells)); 59789566063dSJacob Faibussowitsch for (c = 0; c < n; ++c) PetscCall(DMLabelSetValue(cellLabel, cells[c], 1)); 59799566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(defcellIS, &cells)); 59809566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 59819566063dSJacob Faibussowitsch PetscCall(DMPlexLabelComplete(plex, cellLabel)); 5982083401c6SMatthew G. Knepley 59839566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ndef, &fields)); 59849371c9d4SSatish Balay for (f = 0; f < Nf; ++f) 59859371c9d4SSatish Balay if (!dm->fields[f].label) fields[nf++] = f; 59869566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fieldIS)); 59879566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fieldIS, "dm_fields_")); 59889566063dSJacob Faibussowitsch PetscCall(ISSetType(fieldIS, ISGENERAL)); 59899566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fieldIS, nf, fields, PETSC_OWN_POINTER)); 5990083401c6SMatthew G. Knepley 59919566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 599207218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, cellLabel, fieldIS, dsDef, NULL)); 59939566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 59949566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&cellLabel)); 59959566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 59969566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fieldIS)); 59979566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 5998083401c6SMatthew G. Knepley } 5999083401c6SMatthew G. Knepley /* Create label DSes 6000083401c6SMatthew G. Knepley - WE ONLY SUPPORT IDENTICAL OR DISJOINT LABELS 6001083401c6SMatthew G. Knepley */ 6002083401c6SMatthew G. Knepley /* TODO Should check that labels are disjoint */ 6003083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 6004083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 600507218a29SMatthew G. Knepley PetscDS ds, dsIn = NULL; 6006083401c6SMatthew G. Knepley IS fields; 6007083401c6SMatthew G. Knepley PetscInt *fld, nf; 6008083401c6SMatthew G. Knepley 60099566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 60109371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 60119371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) ++nf; 60129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 60139371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 60149371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) fld[nf++] = f; 60159566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 60169566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 60179566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 60189566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 60199566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(ds, dE)); 6020083401c6SMatthew G. Knepley { 6021083401c6SMatthew G. Knepley DMPolytopeType ct; 6022083401c6SMatthew G. Knepley PetscInt lStart, lEnd; 60235fedec97SMatthew G. Knepley PetscBool isCohesiveLocal = PETSC_FALSE, isCohesive; 60240122748bSMatthew G. Knepley 60259566063dSJacob Faibussowitsch PetscCall(DMLabelGetBounds(label, &lStart, &lEnd)); 6026665f567fSMatthew G. Knepley if (lStart >= 0) { 60279566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, lStart, &ct)); 6028412e9a14SMatthew G. Knepley switch (ct) { 6029412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 6030412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 6031412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 6032d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_QUAD_PRISM_TENSOR: 6033d71ae5a4SJacob Faibussowitsch isCohesiveLocal = PETSC_TRUE; 6034d71ae5a4SJacob Faibussowitsch break; 6035d71ae5a4SJacob Faibussowitsch default: 6036d71ae5a4SJacob Faibussowitsch break; 6037412e9a14SMatthew G. Knepley } 6038665f567fSMatthew G. Knepley } 6039462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&isCohesiveLocal, &isCohesive, 1, MPIU_BOOL, MPI_LOR, comm)); 604007218a29SMatthew G. Knepley if (isCohesive) { 604107218a29SMatthew G. Knepley PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsIn)); 604207218a29SMatthew G. Knepley PetscCall(PetscDSSetCoordinateDimension(dsIn, dE)); 604307218a29SMatthew G. Knepley } 60445fedec97SMatthew G. Knepley for (f = 0, nf = 0; f < Nf; ++f) { 60455fedec97SMatthew G. Knepley if (label == dm->fields[f].label || !dm->fields[f].label) { 60465fedec97SMatthew G. Knepley if (label == dm->fields[f].label) { 60479566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, nf, NULL)); 60489566063dSJacob Faibussowitsch PetscCall(PetscDSSetCohesive(ds, nf, isCohesive)); 604907218a29SMatthew G. Knepley if (dsIn) { 605007218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, nf, NULL)); 605107218a29SMatthew G. Knepley PetscCall(PetscDSSetCohesive(dsIn, nf, isCohesive)); 605207218a29SMatthew G. Knepley } 60535fedec97SMatthew G. Knepley } 60545fedec97SMatthew G. Knepley ++nf; 60555fedec97SMatthew G. Knepley } 60565fedec97SMatthew G. Knepley } 6057e5e52638SMatthew G. Knepley } 605807218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, label, fields, ds, dsIn)); 605907218a29SMatthew G. Knepley PetscCall(ISDestroy(&fields)); 60609566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 606107218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dsIn)); 6062e5e52638SMatthew G. Knepley } 60639566063dSJacob Faibussowitsch PetscCall(PetscFree(labelSet)); 6064e5e52638SMatthew G. Knepley /* Set fields in DSes */ 6065083401c6SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 6066083401c6SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 606707218a29SMatthew G. Knepley PetscDS dsIn = dm->probs[s].dsIn; 6068083401c6SMatthew G. Knepley IS fields = dm->probs[s].fields; 6069083401c6SMatthew G. Knepley const PetscInt *fld; 60705fedec97SMatthew G. Knepley PetscInt nf, dsnf; 60715fedec97SMatthew G. Knepley PetscBool isCohesive; 6072e5e52638SMatthew G. Knepley 60739566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsnf)); 60749566063dSJacob Faibussowitsch PetscCall(PetscDSIsCohesive(ds, &isCohesive)); 60759566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(fields, &nf)); 60769566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fields, &fld)); 6077083401c6SMatthew G. Knepley for (f = 0; f < nf; ++f) { 6078083401c6SMatthew G. Knepley PetscObject disc = dm->fields[fld[f]].disc; 60795fedec97SMatthew G. Knepley PetscBool isCohesiveField; 6080e5e52638SMatthew G. Knepley PetscClassId id; 6081e5e52638SMatthew G. Knepley 60825fedec97SMatthew G. Knepley /* Handle DS with no fields */ 60839566063dSJacob Faibussowitsch if (dsnf) PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField)); 60845fedec97SMatthew G. Knepley /* If this is a cohesive cell, then regular fields need the lower dimensional discretization */ 608507218a29SMatthew G. Knepley if (isCohesive) { 608607218a29SMatthew G. Knepley if (!isCohesiveField) { 608707218a29SMatthew G. Knepley PetscObject bdDisc; 608807218a29SMatthew G. Knepley 608907218a29SMatthew G. Knepley PetscCall(PetscFEGetHeightSubspace((PetscFE)disc, 1, (PetscFE *)&bdDisc)); 609007218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(ds, f, bdDisc)); 609107218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, f, disc)); 609207218a29SMatthew G. Knepley } else { 60939566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, f, disc)); 609407218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, f, disc)); 609507218a29SMatthew G. Knepley } 609607218a29SMatthew G. Knepley } else { 609707218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(ds, f, disc)); 609807218a29SMatthew G. Knepley } 6099083401c6SMatthew G. Knepley /* We allow people to have placeholder fields and construct the Section by hand */ 61009566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 6101e5e52638SMatthew G. Knepley if ((id != PETSCFE_CLASSID) && (id != PETSCFV_CLASSID)) doSetup = PETSC_FALSE; 6102e5e52638SMatthew G. Knepley } 61039566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fields, &fld)); 6104e5e52638SMatthew G. Knepley } 6105f9244615SMatthew G. Knepley /* Allow k-jet tabulation */ 61069566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)dm)->prefix, "-dm_ds_jet_degree", &k, &flg)); 6107f9244615SMatthew G. Knepley if (flg) { 61083b4aee56SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 61093b4aee56SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 611007218a29SMatthew G. Knepley PetscDS dsIn = dm->probs[s].dsIn; 61113b4aee56SMatthew G. Knepley PetscInt Nf, f; 61123b4aee56SMatthew G. Knepley 61139566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 611407218a29SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 611507218a29SMatthew G. Knepley PetscCall(PetscDSSetJetDegree(ds, f, k)); 611607218a29SMatthew G. Knepley if (dsIn) PetscCall(PetscDSSetJetDegree(dsIn, f, k)); 611707218a29SMatthew G. Knepley } 61183b4aee56SMatthew G. Knepley } 6119f9244615SMatthew G. Knepley } 6120e5e52638SMatthew G. Knepley /* Setup DSes */ 6121e5e52638SMatthew G. Knepley if (doSetup) { 612207218a29SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 6123cf1363e4SMatthew G. Knepley if (dm->setfromoptionscalled) { 6124cf1363e4SMatthew G. Knepley PetscCall(PetscDSSetFromOptions(dm->probs[s].ds)); 6125cf1363e4SMatthew G. Knepley if (dm->probs[s].dsIn) PetscCall(PetscDSSetFromOptions(dm->probs[s].dsIn)); 6126cf1363e4SMatthew G. Knepley } 612707218a29SMatthew G. Knepley PetscCall(PetscDSSetUp(dm->probs[s].ds)); 612807218a29SMatthew G. Knepley if (dm->probs[s].dsIn) PetscCall(PetscDSSetUp(dm->probs[s].dsIn)); 612907218a29SMatthew G. Knepley } 6130e5e52638SMatthew G. Knepley } 61313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6132e5e52638SMatthew G. Knepley } 6133e5e52638SMatthew G. Knepley 6134e5e52638SMatthew G. Knepley /*@ 6135d2b2dc1eSMatthew G. Knepley DMUseTensorOrder - Use a tensor product closure ordering for the default section 6136d2b2dc1eSMatthew G. Knepley 6137d2b2dc1eSMatthew G. Knepley Input Parameters: 6138d2b2dc1eSMatthew G. Knepley + dm - The DM 6139d2b2dc1eSMatthew G. Knepley - tensor - Flag for tensor order 6140d2b2dc1eSMatthew G. Knepley 6141d2b2dc1eSMatthew G. Knepley Level: developer 6142d2b2dc1eSMatthew G. Knepley 6143d2b2dc1eSMatthew G. Knepley .seealso: `DMPlexSetClosurePermutationTensor()`, `PetscSectionResetClosurePermutation()` 6144d2b2dc1eSMatthew G. Knepley @*/ 6145d2b2dc1eSMatthew G. Knepley PetscErrorCode DMUseTensorOrder(DM dm, PetscBool tensor) 6146d2b2dc1eSMatthew G. Knepley { 6147d2b2dc1eSMatthew G. Knepley PetscInt Nf; 6148d2b2dc1eSMatthew G. Knepley PetscBool reorder = PETSC_TRUE, isPlex; 6149d2b2dc1eSMatthew G. Knepley 6150d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 6151d2b2dc1eSMatthew G. Knepley PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 6152d2b2dc1eSMatthew G. Knepley PetscCall(DMGetNumFields(dm, &Nf)); 6153d2b2dc1eSMatthew G. Knepley for (PetscInt f = 0; f < Nf; ++f) { 6154d2b2dc1eSMatthew G. Knepley PetscObject obj; 6155d2b2dc1eSMatthew G. Knepley PetscClassId id; 6156d2b2dc1eSMatthew G. Knepley 6157d2b2dc1eSMatthew G. Knepley PetscCall(DMGetField(dm, f, NULL, &obj)); 6158d2b2dc1eSMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 6159d2b2dc1eSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 6160d2b2dc1eSMatthew G. Knepley PetscSpace sp; 6161d2b2dc1eSMatthew G. Knepley PetscBool tensor; 6162d2b2dc1eSMatthew G. Knepley 6163d2b2dc1eSMatthew G. Knepley PetscCall(PetscFEGetBasisSpace((PetscFE)obj, &sp)); 6164d2b2dc1eSMatthew G. Knepley PetscCall(PetscSpacePolynomialGetTensor(sp, &tensor)); 6165d2b2dc1eSMatthew G. Knepley reorder = reorder && tensor ? PETSC_TRUE : PETSC_FALSE; 6166d2b2dc1eSMatthew G. Knepley } else reorder = PETSC_FALSE; 6167d2b2dc1eSMatthew G. Knepley } 6168d2b2dc1eSMatthew G. Knepley if (tensor) { 6169d2b2dc1eSMatthew G. Knepley if (reorder && isPlex) PetscCall(DMPlexSetClosurePermutationTensor(dm, PETSC_DETERMINE, NULL)); 6170d2b2dc1eSMatthew G. Knepley } else { 6171d2b2dc1eSMatthew G. Knepley PetscSection s; 6172d2b2dc1eSMatthew G. Knepley 6173d2b2dc1eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm, &s)); 6174d2b2dc1eSMatthew G. Knepley if (s) PetscCall(PetscSectionResetClosurePermutation(s)); 6175d2b2dc1eSMatthew G. Knepley } 6176d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 6177d2b2dc1eSMatthew G. Knepley } 6178d2b2dc1eSMatthew G. Knepley 6179d2b2dc1eSMatthew G. Knepley /*@ 6180bb7acecfSBarry Smith DMComputeExactSolution - Compute the exact solution for a given `DM`, using the `PetscDS` information. 61817f96f943SMatthew G. Knepley 618220f4b53cSBarry Smith Collective 6183f2cacb80SMatthew G. Knepley 61847f96f943SMatthew G. Knepley Input Parameters: 6185bb7acecfSBarry Smith + dm - The `DM` 61867f96f943SMatthew G. Knepley - time - The time 61877f96f943SMatthew G. Knepley 61887f96f943SMatthew G. Knepley Output Parameters: 618920f4b53cSBarry Smith + u - The vector will be filled with exact solution values, or `NULL` 619020f4b53cSBarry Smith - u_t - The vector will be filled with the time derivative of exact solution values, or `NULL` 619120f4b53cSBarry Smith 619220f4b53cSBarry Smith Level: developer 61937f96f943SMatthew G. Knepley 6194bb7acecfSBarry Smith Note: 6195bb7acecfSBarry Smith The user must call `PetscDSSetExactSolution()` before using this routine 61967f96f943SMatthew G. Knepley 61971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscDSSetExactSolution()` 61987f96f943SMatthew G. Knepley @*/ 6199d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeExactSolution(DM dm, PetscReal time, Vec u, Vec u_t) 6200d71ae5a4SJacob Faibussowitsch { 62017f96f943SMatthew G. Knepley PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 62027f96f943SMatthew G. Knepley void **ectxs; 6203f60fa741SMatthew G. Knepley Vec locu, locu_t; 62047f96f943SMatthew G. Knepley PetscInt Nf, Nds, s; 62057f96f943SMatthew G. Knepley 62067f96f943SMatthew G. Knepley PetscFunctionBegin; 6207f2cacb80SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6208f60fa741SMatthew G. Knepley if (u) { 6209f60fa741SMatthew G. Knepley PetscValidHeaderSpecific(u, VEC_CLASSID, 3); 6210f60fa741SMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &locu)); 6211f60fa741SMatthew G. Knepley PetscCall(VecSet(locu, 0.)); 6212f60fa741SMatthew G. Knepley } 6213f60fa741SMatthew G. Knepley if (u_t) { 6214f60fa741SMatthew G. Knepley PetscValidHeaderSpecific(u_t, VEC_CLASSID, 4); 6215f60fa741SMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &locu_t)); 6216f60fa741SMatthew G. Knepley PetscCall(VecSet(locu_t, 0.)); 6217f60fa741SMatthew G. Knepley } 62189566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 62199566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(Nf, &exacts, Nf, &ectxs)); 62209566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 62217f96f943SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 62227f96f943SMatthew G. Knepley PetscDS ds; 62237f96f943SMatthew G. Knepley DMLabel label; 62247f96f943SMatthew G. Knepley IS fieldIS; 62257f96f943SMatthew G. Knepley const PetscInt *fields, id = 1; 62267f96f943SMatthew G. Knepley PetscInt dsNf, f; 62277f96f943SMatthew G. Knepley 622807218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 62299566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 62309566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fieldIS, &fields)); 62319566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 62329566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6233f2cacb80SMatthew G. Knepley if (u) { 6234f60fa741SMatthew G. Knepley for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolution(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]])); 6235f60fa741SMatthew G. Knepley if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu)); 6236f60fa741SMatthew G. Knepley else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu)); 62377f96f943SMatthew G. Knepley } 6238f2cacb80SMatthew G. Knepley if (u_t) { 62399566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 62409566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6241f60fa741SMatthew G. Knepley for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolutionTimeDerivative(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]])); 6242f60fa741SMatthew G. Knepley if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu_t)); 6243f60fa741SMatthew G. Knepley else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu_t)); 6244f2cacb80SMatthew G. Knepley } 62459566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fieldIS, &fields)); 6246f2cacb80SMatthew G. Knepley } 6247f2cacb80SMatthew G. Knepley if (u) { 62489566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution")); 62499566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u, "exact_")); 6250f2cacb80SMatthew G. Knepley } 6251f2cacb80SMatthew G. Knepley if (u_t) { 62529566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution Time Derivative")); 62539566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u_t, "exact_t_")); 6254f2cacb80SMatthew G. Knepley } 62559566063dSJacob Faibussowitsch PetscCall(PetscFree2(exacts, ectxs)); 6256f60fa741SMatthew G. Knepley if (u) { 6257f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, locu, INSERT_ALL_VALUES, u)); 6258f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, locu, INSERT_ALL_VALUES, u)); 6259f60fa741SMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &locu)); 6260f60fa741SMatthew G. Knepley } 6261f60fa741SMatthew G. Knepley if (u_t) { 6262f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, locu_t, INSERT_ALL_VALUES, u_t)); 6263f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, locu_t, INSERT_ALL_VALUES, u_t)); 6264f60fa741SMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &locu_t)); 6265f60fa741SMatthew G. Knepley } 62663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 62677f96f943SMatthew G. Knepley } 62687f96f943SMatthew G. Knepley 6269bb4b53efSMatthew G. Knepley static PetscErrorCode DMTransferDS_Internal(DM dm, DMLabel label, IS fields, PetscInt minDegree, PetscInt maxDegree, PetscDS ds, PetscDS dsIn) 6270d71ae5a4SJacob Faibussowitsch { 627107218a29SMatthew G. Knepley PetscDS dsNew, dsInNew = NULL; 627245480ffeSMatthew G. Knepley 627345480ffeSMatthew G. Knepley PetscFunctionBegin; 62749566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)ds), &dsNew)); 6275bb4b53efSMatthew G. Knepley PetscCall(PetscDSCopy(ds, minDegree, maxDegree, dm, dsNew)); 627607218a29SMatthew G. Knepley if (dsIn) { 627707218a29SMatthew G. Knepley PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)dsIn), &dsInNew)); 6278bb4b53efSMatthew G. Knepley PetscCall(PetscDSCopy(dsIn, minDegree, maxDegree, dm, dsInNew)); 627945480ffeSMatthew G. Knepley } 628007218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, label, fields, dsNew, dsInNew)); 62819566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsNew)); 628207218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dsInNew)); 62833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 628445480ffeSMatthew G. Knepley } 628545480ffeSMatthew G. Knepley 62867f96f943SMatthew G. Knepley /*@ 6287bb7acecfSBarry Smith DMCopyDS - Copy the discrete systems for the `DM` into another `DM` 6288e5e52638SMatthew G. Knepley 628920f4b53cSBarry Smith Collective 6290e5e52638SMatthew G. Knepley 6291bb4b53efSMatthew G. Knepley Input Parameters: 6292bb4b53efSMatthew G. Knepley + dm - The `DM` 6293bb4b53efSMatthew G. Knepley . minDegree - Minimum degree for a discretization, or `PETSC_DETERMINE` for no limit 6294bb4b53efSMatthew G. Knepley - maxDegree - Maximum degree for a discretization, or `PETSC_DETERMINE` for no limit 6295e5e52638SMatthew G. Knepley 6296e5e52638SMatthew G. Knepley Output Parameter: 6297bb7acecfSBarry Smith . newdm - The `DM` 6298e5e52638SMatthew G. Knepley 6299e5e52638SMatthew G. Knepley Level: advanced 6300e5e52638SMatthew G. Knepley 63011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 6302e5e52638SMatthew G. Knepley @*/ 6303bb4b53efSMatthew G. Knepley PetscErrorCode DMCopyDS(DM dm, PetscInt minDegree, PetscInt maxDegree, DM newdm) 6304d71ae5a4SJacob Faibussowitsch { 6305e5e52638SMatthew G. Knepley PetscInt Nds, s; 6306e5e52638SMatthew G. Knepley 6307e5e52638SMatthew G. Knepley PetscFunctionBegin; 63083ba16761SJacob Faibussowitsch if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS); 63099566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 63109566063dSJacob Faibussowitsch PetscCall(DMClearDS(newdm)); 6311e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 6312e5e52638SMatthew G. Knepley DMLabel label; 6313b3cf3223SMatthew G. Knepley IS fields; 631407218a29SMatthew G. Knepley PetscDS ds, dsIn, newds; 6315783e2ec8SMatthew G. Knepley PetscInt Nbd, bd; 6316e5e52638SMatthew G. Knepley 631707218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fields, &ds, &dsIn)); 6318b8025e53SMatthew G. Knepley /* TODO: We need to change all keys from labels in the old DM to labels in the new DM */ 6319bb4b53efSMatthew G. Knepley PetscCall(DMTransferDS_Internal(newdm, label, fields, minDegree, maxDegree, ds, dsIn)); 6320d5b43468SJose E. Roman /* Complete new labels in the new DS */ 632107218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(newdm, label, NULL, &newds, NULL)); 63229566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(newds, &Nbd)); 6323783e2ec8SMatthew G. Knepley for (bd = 0; bd < Nbd; ++bd) { 6324b8025e53SMatthew G. Knepley PetscWeakForm wf; 632545480ffeSMatthew G. Knepley DMLabel label; 6326783e2ec8SMatthew G. Knepley PetscInt field; 6327783e2ec8SMatthew G. Knepley 63289566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(newds, bd, &wf, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 63299566063dSJacob Faibussowitsch PetscCall(PetscWeakFormReplaceLabel(wf, label)); 6330783e2ec8SMatthew G. Knepley } 6331e5e52638SMatthew G. Knepley } 6332799db056SMatthew G. Knepley PetscCall(DMCompleteBCLabels_Internal(newdm)); 63333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6334e5e52638SMatthew G. Knepley } 6335e5e52638SMatthew G. Knepley 6336e5e52638SMatthew G. Knepley /*@ 6337bb7acecfSBarry Smith DMCopyDisc - Copy the fields and discrete systems for the `DM` into another `DM` 6338e5e52638SMatthew G. Knepley 633920f4b53cSBarry Smith Collective 6340e5e52638SMatthew G. Knepley 6341e5e52638SMatthew G. Knepley Input Parameter: 6342bb7acecfSBarry Smith . dm - The `DM` 6343e5e52638SMatthew G. Knepley 6344e5e52638SMatthew G. Knepley Output Parameter: 6345bb7acecfSBarry Smith . newdm - The `DM` 6346e5e52638SMatthew G. Knepley 6347e5e52638SMatthew G. Knepley Level: advanced 6348e5e52638SMatthew G. Knepley 634973ff1848SBarry Smith Developer Note: 6350bb7acecfSBarry Smith Really ugly name, nothing in PETSc is called a `Disc` plus it is an ugly abbreviation 6351bb7acecfSBarry Smith 63521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMCopyDS()` 6353e5e52638SMatthew G. Knepley @*/ 6354d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDisc(DM dm, DM newdm) 6355d71ae5a4SJacob Faibussowitsch { 6356e5e52638SMatthew G. Knepley PetscFunctionBegin; 6357bb4b53efSMatthew G. Knepley PetscCall(DMCopyFields(dm, PETSC_DETERMINE, PETSC_DETERMINE, newdm)); 6358bb4b53efSMatthew G. Knepley PetscCall(DMCopyDS(dm, PETSC_DETERMINE, PETSC_DETERMINE, newdm)); 63593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6360e5e52638SMatthew G. Knepley } 6361e5e52638SMatthew G. Knepley 6362c73cfb54SMatthew G. Knepley /*@ 6363bb7acecfSBarry Smith DMGetDimension - Return the topological dimension of the `DM` 6364c73cfb54SMatthew G. Knepley 636520f4b53cSBarry Smith Not Collective 6366c73cfb54SMatthew G. Knepley 6367c73cfb54SMatthew G. Knepley Input Parameter: 6368bb7acecfSBarry Smith . dm - The `DM` 6369c73cfb54SMatthew G. Knepley 6370c73cfb54SMatthew G. Knepley Output Parameter: 6371c73cfb54SMatthew G. Knepley . dim - The topological dimension 6372c73cfb54SMatthew G. Knepley 6373c73cfb54SMatthew G. Knepley Level: beginner 6374c73cfb54SMatthew G. Knepley 63751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDimension()`, `DMCreate()` 6376c73cfb54SMatthew G. Knepley @*/ 6377d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimension(DM dm, PetscInt *dim) 6378d71ae5a4SJacob Faibussowitsch { 6379c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6380c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 63814f572ea9SToby Isaac PetscAssertPointer(dim, 2); 6382c73cfb54SMatthew G. Knepley *dim = dm->dim; 63833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6384c73cfb54SMatthew G. Knepley } 6385c73cfb54SMatthew G. Knepley 6386c73cfb54SMatthew G. Knepley /*@ 6387bb7acecfSBarry Smith DMSetDimension - Set the topological dimension of the `DM` 6388c73cfb54SMatthew G. Knepley 638920f4b53cSBarry Smith Collective 6390c73cfb54SMatthew G. Knepley 6391c73cfb54SMatthew G. Knepley Input Parameters: 6392bb7acecfSBarry Smith + dm - The `DM` 6393c73cfb54SMatthew G. Knepley - dim - The topological dimension 6394c73cfb54SMatthew G. Knepley 6395c73cfb54SMatthew G. Knepley Level: beginner 6396c73cfb54SMatthew G. Knepley 63971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDimension()`, `DMCreate()` 6398c73cfb54SMatthew G. Knepley @*/ 6399d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDimension(DM dm, PetscInt dim) 6400d71ae5a4SJacob Faibussowitsch { 6401e5e52638SMatthew G. Knepley PetscDS ds; 640245480ffeSMatthew G. Knepley PetscInt Nds, n; 6403f17e8794SMatthew G. Knepley 6404c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6405c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6406c73cfb54SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, dim, 2); 6407c73cfb54SMatthew G. Knepley dm->dim = dim; 6408d17bd122SMatthew G. Knepley if (dm->dim >= 0) { 64099566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 641045480ffeSMatthew G. Knepley for (n = 0; n < Nds; ++n) { 641107218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, n, NULL, NULL, &ds, NULL)); 64129566063dSJacob Faibussowitsch if (ds->dimEmbed < 0) PetscCall(PetscDSSetCoordinateDimension(ds, dim)); 641345480ffeSMatthew G. Knepley } 6414d17bd122SMatthew G. Knepley } 64153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6416c73cfb54SMatthew G. Knepley } 6417c73cfb54SMatthew G. Knepley 6418793f3fe5SMatthew G. Knepley /*@ 6419793f3fe5SMatthew G. Knepley DMGetDimPoints - Get the half-open interval for all points of a given dimension 6420793f3fe5SMatthew G. Knepley 642120f4b53cSBarry Smith Collective 6422793f3fe5SMatthew G. Knepley 6423793f3fe5SMatthew G. Knepley Input Parameters: 6424bb7acecfSBarry Smith + dm - the `DM` 6425793f3fe5SMatthew G. Knepley - dim - the dimension 6426793f3fe5SMatthew G. Knepley 6427793f3fe5SMatthew G. Knepley Output Parameters: 6428793f3fe5SMatthew G. Knepley + pStart - The first point of the given dimension 6429aa049354SPatrick Sanan - pEnd - The first point following points of the given dimension 6430793f3fe5SMatthew G. Knepley 643120f4b53cSBarry Smith Level: intermediate 643220f4b53cSBarry Smith 6433793f3fe5SMatthew G. Knepley Note: 6434793f3fe5SMatthew G. Knepley The points are vertices in the Hasse diagram encoding the topology. This is explained in 6435a8d69d7bSBarry Smith https://arxiv.org/abs/0908.4427. If no points exist of this dimension in the storage scheme, 6436793f3fe5SMatthew G. Knepley then the interval is empty. 6437793f3fe5SMatthew G. Knepley 64381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPLEX`, `DMPlexGetDepthStratum()`, `DMPlexGetHeightStratum()` 6439793f3fe5SMatthew G. Knepley @*/ 6440d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimPoints(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd) 6441d71ae5a4SJacob Faibussowitsch { 6442793f3fe5SMatthew G. Knepley PetscInt d; 6443793f3fe5SMatthew G. Knepley 6444793f3fe5SMatthew G. Knepley PetscFunctionBegin; 6445793f3fe5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64469566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &d)); 64477a8be351SBarry Smith PetscCheck((dim >= 0) && (dim <= d), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %" PetscInt_FMT, dim); 6448dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getdimpoints, dim, pStart, pEnd); 64493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6450793f3fe5SMatthew G. Knepley } 6451793f3fe5SMatthew G. Knepley 64526636e97aSMatthew G Knepley /*@ 6453bb7acecfSBarry Smith DMGetOutputDM - Retrieve the `DM` associated with the layout for output 6454f4d763aaSMatthew G. Knepley 645520f4b53cSBarry Smith Collective 64568f700142SStefano Zampini 6457f4d763aaSMatthew G. Knepley Input Parameter: 6458bb7acecfSBarry Smith . dm - The original `DM` 6459f4d763aaSMatthew G. Knepley 6460f4d763aaSMatthew G. Knepley Output Parameter: 6461bb7acecfSBarry Smith . odm - The `DM` which provides the layout for output 6462f4d763aaSMatthew G. Knepley 6463f4d763aaSMatthew G. Knepley Level: intermediate 6464f4d763aaSMatthew G. Knepley 6465bb7acecfSBarry Smith Note: 6466bb7acecfSBarry Smith In some situations the vector obtained with `DMCreateGlobalVector()` excludes points for degrees of freedom that are associated with fixed (Dirichelet) boundary 6467bb7acecfSBarry Smith conditions since the algebraic solver does not solve for those variables. The output `DM` includes these excluded points and its global vector contains the 6468bb7acecfSBarry Smith locations for those dof so that they can be output to a file or other viewer along with the unconstrained dof. 6469bb7acecfSBarry Smith 64701cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`, `DMGetGlobalSection()`, `DMCreateGlobalVector()`, `PetscSectionHasConstraints()`, `DMSetGlobalSection()` 6471f4d763aaSMatthew G. Knepley @*/ 6472d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputDM(DM dm, DM *odm) 6473d71ae5a4SJacob Faibussowitsch { 6474c26acbdeSMatthew G. Knepley PetscSection section; 6475eb9d3e4dSMatthew G. Knepley IS perm; 6476eb9d3e4dSMatthew G. Knepley PetscBool hasConstraints, newDM, gnewDM; 647792a26154SJames Wright PetscInt num_face_sfs = 0; 647814f150ffSMatthew G. Knepley 647914f150ffSMatthew G. Knepley PetscFunctionBegin; 648014f150ffSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64814f572ea9SToby Isaac PetscAssertPointer(odm, 2); 64829566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 64839566063dSJacob Faibussowitsch PetscCall(PetscSectionHasConstraints(section, &hasConstraints)); 6484eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionGetPermutation(section, &perm)); 648592a26154SJames Wright PetscCall(DMPlexGetIsoperiodicFaceSF(dm, &num_face_sfs, NULL)); 648692a26154SJames Wright newDM = hasConstraints || perm || (num_face_sfs > 0) ? PETSC_TRUE : PETSC_FALSE; 6487462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&newDM, &gnewDM, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm))); 6488eb9d3e4dSMatthew G. Knepley if (!gnewDM) { 6489c26acbdeSMatthew G. Knepley *odm = dm; 64903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6491c26acbdeSMatthew G. Knepley } 649214f150ffSMatthew G. Knepley if (!dm->dmBC) { 6493c26acbdeSMatthew G. Knepley PetscSection newSection, gsection; 649492a26154SJames Wright PetscSF sf, sfNatural; 6495eb9d3e4dSMatthew G. Knepley PetscBool usePerm = dm->ignorePermOutput ? PETSC_FALSE : PETSC_TRUE; 649614f150ffSMatthew G. Knepley 64979566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->dmBC)); 64989566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, dm->dmBC)); 64999566063dSJacob Faibussowitsch PetscCall(PetscSectionClone(section, &newSection)); 65009566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm->dmBC, newSection)); 65019566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newSection)); 650292a26154SJames Wright PetscCall(DMGetNaturalSF(dm, &sfNatural)); 650392a26154SJames Wright PetscCall(DMSetNaturalSF(dm->dmBC, sfNatural)); 65049566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm->dmBC, &sf)); 6505eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionCreateGlobalSection(section, sf, usePerm, PETSC_TRUE, PETSC_FALSE, &gsection)); 65069566063dSJacob Faibussowitsch PetscCall(DMSetGlobalSection(dm->dmBC, gsection)); 65079566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&gsection)); 650814f150ffSMatthew G. Knepley } 650914f150ffSMatthew G. Knepley *odm = dm->dmBC; 65103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 651114f150ffSMatthew G. Knepley } 6512f4d763aaSMatthew G. Knepley 6513f4d763aaSMatthew G. Knepley /*@ 6514cdb7a50dSMatthew G. Knepley DMGetOutputSequenceNumber - Retrieve the sequence number/value for output 6515f4d763aaSMatthew G. Knepley 6516f4d763aaSMatthew G. Knepley Input Parameter: 6517bb7acecfSBarry Smith . dm - The original `DM` 6518f4d763aaSMatthew G. Knepley 6519cdb7a50dSMatthew G. Knepley Output Parameters: 6520cdb7a50dSMatthew G. Knepley + num - The output sequence number 6521cdb7a50dSMatthew G. Knepley - val - The output sequence value 6522f4d763aaSMatthew G. Knepley 6523f4d763aaSMatthew G. Knepley Level: intermediate 6524f4d763aaSMatthew G. Knepley 6525bb7acecfSBarry Smith Note: 6526bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6527bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6528bb7acecfSBarry Smith 652973ff1848SBarry Smith Developer Note: 6530bb7acecfSBarry Smith The `DM` serves as a convenient place to store the current iteration value. The iteration is not 6531bb7acecfSBarry Smith not directly related to the `DM`. 6532f4d763aaSMatthew G. Knepley 65331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()` 6534f4d763aaSMatthew G. Knepley @*/ 6535d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputSequenceNumber(DM dm, PetscInt *num, PetscReal *val) 6536d71ae5a4SJacob Faibussowitsch { 6537f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6538f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 65399371c9d4SSatish Balay if (num) { 65404f572ea9SToby Isaac PetscAssertPointer(num, 2); 65419371c9d4SSatish Balay *num = dm->outputSequenceNum; 65429371c9d4SSatish Balay } 65439371c9d4SSatish Balay if (val) { 65444f572ea9SToby Isaac PetscAssertPointer(val, 3); 65459371c9d4SSatish Balay *val = dm->outputSequenceVal; 65469371c9d4SSatish Balay } 65473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6548f4d763aaSMatthew G. Knepley } 6549f4d763aaSMatthew G. Knepley 6550f4d763aaSMatthew G. Knepley /*@ 6551cdb7a50dSMatthew G. Knepley DMSetOutputSequenceNumber - Set the sequence number/value for output 6552f4d763aaSMatthew G. Knepley 6553f4d763aaSMatthew G. Knepley Input Parameters: 6554bb7acecfSBarry Smith + dm - The original `DM` 6555cdb7a50dSMatthew G. Knepley . num - The output sequence number 6556cdb7a50dSMatthew G. Knepley - val - The output sequence value 6557f4d763aaSMatthew G. Knepley 6558f4d763aaSMatthew G. Knepley Level: intermediate 6559f4d763aaSMatthew G. Knepley 6560bb7acecfSBarry Smith Note: 6561bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6562bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6563f4d763aaSMatthew G. Knepley 65641cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()` 6565f4d763aaSMatthew G. Knepley @*/ 6566d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOutputSequenceNumber(DM dm, PetscInt num, PetscReal val) 6567d71ae5a4SJacob Faibussowitsch { 6568f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6569f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6570f4d763aaSMatthew G. Knepley dm->outputSequenceNum = num; 6571cdb7a50dSMatthew G. Knepley dm->outputSequenceVal = val; 65723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6573cdb7a50dSMatthew G. Knepley } 6574cdb7a50dSMatthew G. Knepley 65755d83a8b1SBarry Smith /*@ 6576bb7acecfSBarry Smith DMOutputSequenceLoad - Retrieve the sequence value from a `PetscViewer` 6577cdb7a50dSMatthew G. Knepley 6578cdb7a50dSMatthew G. Knepley Input Parameters: 6579bb7acecfSBarry Smith + dm - The original `DM` 6580b2033f5dSMatthew G. Knepley . viewer - The `PetscViewer` to get it from 6581cdb7a50dSMatthew G. Knepley . name - The sequence name 6582cdb7a50dSMatthew G. Knepley - num - The output sequence number 6583cdb7a50dSMatthew G. Knepley 6584cdb7a50dSMatthew G. Knepley Output Parameter: 6585cdb7a50dSMatthew G. Knepley . val - The output sequence value 6586cdb7a50dSMatthew G. Knepley 6587cdb7a50dSMatthew G. Knepley Level: intermediate 6588cdb7a50dSMatthew G. Knepley 6589bb7acecfSBarry Smith Note: 6590bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6591bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6592bb7acecfSBarry Smith 659373ff1848SBarry Smith Developer Note: 6594bb7acecfSBarry Smith It is unclear at the user API level why a `DM` is needed as input 6595cdb7a50dSMatthew G. Knepley 65961cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()` 6597cdb7a50dSMatthew G. Knepley @*/ 6598b2033f5dSMatthew G. Knepley PetscErrorCode DMOutputSequenceLoad(DM dm, PetscViewer viewer, const char name[], PetscInt num, PetscReal *val) 6599d71ae5a4SJacob Faibussowitsch { 6600cdb7a50dSMatthew G. Knepley PetscBool ishdf5; 6601cdb7a50dSMatthew G. Knepley 6602cdb7a50dSMatthew G. Knepley PetscFunctionBegin; 6603cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6604cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 6605b2033f5dSMatthew G. Knepley PetscAssertPointer(name, 3); 66064f572ea9SToby Isaac PetscAssertPointer(val, 5); 66079566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 6608cdb7a50dSMatthew G. Knepley if (ishdf5) { 6609cdb7a50dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 6610cdb7a50dSMatthew G. Knepley PetscScalar value; 6611cdb7a50dSMatthew G. Knepley 66129566063dSJacob Faibussowitsch PetscCall(DMSequenceLoad_HDF5_Internal(dm, name, num, &value, viewer)); 66134aeb217fSMatthew G. Knepley *val = PetscRealPart(value); 6614cdb7a50dSMatthew G. Knepley #endif 6615cdb7a50dSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()"); 66163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6617f4d763aaSMatthew G. Knepley } 66188e4ac7eaSMatthew G. Knepley 66198e4ac7eaSMatthew G. Knepley /*@ 6620b2033f5dSMatthew G. Knepley DMGetOutputSequenceLength - Retrieve the number of sequence values from a `PetscViewer` 6621b2033f5dSMatthew G. Knepley 6622b2033f5dSMatthew G. Knepley Input Parameters: 6623b2033f5dSMatthew G. Knepley + dm - The original `DM` 6624b2033f5dSMatthew G. Knepley . viewer - The `PetscViewer` to get it from 6625b2033f5dSMatthew G. Knepley - name - The sequence name 6626b2033f5dSMatthew G. Knepley 6627b2033f5dSMatthew G. Knepley Output Parameter: 6628b2033f5dSMatthew G. Knepley . len - The length of the output sequence 6629b2033f5dSMatthew G. Knepley 6630b2033f5dSMatthew G. Knepley Level: intermediate 6631b2033f5dSMatthew G. Knepley 6632b2033f5dSMatthew G. Knepley Note: 6633b2033f5dSMatthew G. Knepley This is intended for output that should appear in sequence, for instance 6634b2033f5dSMatthew G. Knepley a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6635b2033f5dSMatthew G. Knepley 6636b2033f5dSMatthew G. Knepley Developer Note: 6637b2033f5dSMatthew G. Knepley It is unclear at the user API level why a `DM` is needed as input 6638b2033f5dSMatthew G. Knepley 6639b2033f5dSMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()` 6640b2033f5dSMatthew G. Knepley @*/ 6641b2033f5dSMatthew G. Knepley PetscErrorCode DMGetOutputSequenceLength(DM dm, PetscViewer viewer, const char name[], PetscInt *len) 6642b2033f5dSMatthew G. Knepley { 6643b2033f5dSMatthew G. Knepley PetscBool ishdf5; 6644b2033f5dSMatthew G. Knepley 6645b2033f5dSMatthew G. Knepley PetscFunctionBegin; 6646b2033f5dSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6647b2033f5dSMatthew G. Knepley PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 6648b2033f5dSMatthew G. Knepley PetscAssertPointer(name, 3); 6649b2033f5dSMatthew G. Knepley PetscAssertPointer(len, 4); 6650b2033f5dSMatthew G. Knepley PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 6651b2033f5dSMatthew G. Knepley if (ishdf5) { 6652b2033f5dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 6653b2033f5dSMatthew G. Knepley PetscCall(DMSequenceGetLength_HDF5_Internal(dm, name, len, viewer)); 6654b2033f5dSMatthew G. Knepley #endif 6655b2033f5dSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()"); 6656b2033f5dSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 6657b2033f5dSMatthew G. Knepley } 6658b2033f5dSMatthew G. Knepley 6659b2033f5dSMatthew G. Knepley /*@ 6660bb7acecfSBarry Smith DMGetUseNatural - Get the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 66618e4ac7eaSMatthew G. Knepley 666220f4b53cSBarry Smith Not Collective 66638e4ac7eaSMatthew G. Knepley 66648e4ac7eaSMatthew G. Knepley Input Parameter: 6665bb7acecfSBarry Smith . dm - The `DM` 66668e4ac7eaSMatthew G. Knepley 66678e4ac7eaSMatthew G. Knepley Output Parameter: 6668bb7acecfSBarry Smith . useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 66698e4ac7eaSMatthew G. Knepley 66708e4ac7eaSMatthew G. Knepley Level: beginner 66718e4ac7eaSMatthew G. Knepley 66721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetUseNatural()`, `DMCreate()` 66738e4ac7eaSMatthew G. Knepley @*/ 6674d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetUseNatural(DM dm, PetscBool *useNatural) 6675d71ae5a4SJacob Faibussowitsch { 66768e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 66778e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 66784f572ea9SToby Isaac PetscAssertPointer(useNatural, 2); 66798e4ac7eaSMatthew G. Knepley *useNatural = dm->useNatural; 66803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 66818e4ac7eaSMatthew G. Knepley } 66828e4ac7eaSMatthew G. Knepley 66838e4ac7eaSMatthew G. Knepley /*@ 6684bb7acecfSBarry Smith DMSetUseNatural - Set the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 66858e4ac7eaSMatthew G. Knepley 668620f4b53cSBarry Smith Collective 66878e4ac7eaSMatthew G. Knepley 66888e4ac7eaSMatthew G. Knepley Input Parameters: 6689bb7acecfSBarry Smith + dm - The `DM` 6690bb7acecfSBarry Smith - useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 66918e4ac7eaSMatthew G. Knepley 669273ff1848SBarry Smith Level: beginner 669373ff1848SBarry Smith 6694bb7acecfSBarry Smith Note: 6695bb7acecfSBarry Smith This also causes the map to be build after `DMCreateSubDM()` and `DMCreateSuperDM()` 66965d3b26e6SMatthew G. Knepley 66971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetUseNatural()`, `DMCreate()`, `DMPlexDistribute()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 66988e4ac7eaSMatthew G. Knepley @*/ 6699d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUseNatural(DM dm, PetscBool useNatural) 6700d71ae5a4SJacob Faibussowitsch { 67018e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 67028e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67038833efb5SBlaise Bourdin PetscValidLogicalCollectiveBool(dm, useNatural, 2); 67048e4ac7eaSMatthew G. Knepley dm->useNatural = useNatural; 67053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 67068e4ac7eaSMatthew G. Knepley } 6707c58f1c22SToby Isaac 6708cc4c1da9SBarry Smith /*@ 6709bb7acecfSBarry Smith DMCreateLabel - Create a label of the given name if it does not already exist in the `DM` 6710c58f1c22SToby Isaac 6711c58f1c22SToby Isaac Not Collective 6712c58f1c22SToby Isaac 6713c58f1c22SToby Isaac Input Parameters: 6714bb7acecfSBarry Smith + dm - The `DM` object 6715c58f1c22SToby Isaac - name - The label name 6716c58f1c22SToby Isaac 6717c58f1c22SToby Isaac Level: intermediate 6718c58f1c22SToby Isaac 67191cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6720c58f1c22SToby Isaac @*/ 6721d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabel(DM dm, const char name[]) 6722d71ae5a4SJacob Faibussowitsch { 67235d80c0bfSVaclav Hapla PetscBool flg; 67245d80c0bfSVaclav Hapla DMLabel label; 6725c58f1c22SToby Isaac 6726c58f1c22SToby Isaac PetscFunctionBegin; 6727c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67284f572ea9SToby Isaac PetscAssertPointer(name, 2); 67299566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 6730c58f1c22SToby Isaac if (!flg) { 67319566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 67329566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 67339566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 6734c58f1c22SToby Isaac } 67353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6736c58f1c22SToby Isaac } 6737c58f1c22SToby Isaac 6738cc4c1da9SBarry Smith /*@ 6739bb7acecfSBarry Smith DMCreateLabelAtIndex - Create a label of the given name at the given index. If it already exists in the `DM`, move it to this index. 67400fdc7489SMatthew Knepley 67410fdc7489SMatthew Knepley Not Collective 67420fdc7489SMatthew Knepley 67430fdc7489SMatthew Knepley Input Parameters: 6744bb7acecfSBarry Smith + dm - The `DM` object 67450fdc7489SMatthew Knepley . l - The index for the label 67460fdc7489SMatthew Knepley - name - The label name 67470fdc7489SMatthew Knepley 67480fdc7489SMatthew Knepley Level: intermediate 67490fdc7489SMatthew Knepley 67501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateLabel()`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 67510fdc7489SMatthew Knepley @*/ 6752d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabelAtIndex(DM dm, PetscInt l, const char name[]) 6753d71ae5a4SJacob Faibussowitsch { 67540fdc7489SMatthew Knepley DMLabelLink orig, prev = NULL; 67550fdc7489SMatthew Knepley DMLabel label; 67560fdc7489SMatthew Knepley PetscInt Nl, m; 67570fdc7489SMatthew Knepley PetscBool flg, match; 67580fdc7489SMatthew Knepley const char *lname; 67590fdc7489SMatthew Knepley 67600fdc7489SMatthew Knepley PetscFunctionBegin; 67610fdc7489SMatthew Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67624f572ea9SToby Isaac PetscAssertPointer(name, 3); 67639566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 67640fdc7489SMatthew Knepley if (!flg) { 67659566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 67669566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 67679566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 67680fdc7489SMatthew Knepley } 67699566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 677063a3b9bcSJacob Faibussowitsch PetscCheck(l < Nl, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label index %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", l, Nl); 67710fdc7489SMatthew Knepley for (m = 0, orig = dm->labels; m < Nl; ++m, prev = orig, orig = orig->next) { 67729566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)orig->label, &lname)); 67739566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &match)); 67740fdc7489SMatthew Knepley if (match) break; 67750fdc7489SMatthew Knepley } 67763ba16761SJacob Faibussowitsch if (m == l) PetscFunctionReturn(PETSC_SUCCESS); 67770fdc7489SMatthew Knepley if (!m) dm->labels = orig->next; 67780fdc7489SMatthew Knepley else prev->next = orig->next; 67790fdc7489SMatthew Knepley if (!l) { 67800fdc7489SMatthew Knepley orig->next = dm->labels; 67810fdc7489SMatthew Knepley dm->labels = orig; 67820fdc7489SMatthew Knepley } else { 6783fbccb6d4SPierre Jolivet for (m = 0, prev = dm->labels; m < l - 1; ++m, prev = prev->next); 67840fdc7489SMatthew Knepley orig->next = prev->next; 67850fdc7489SMatthew Knepley prev->next = orig; 67860fdc7489SMatthew Knepley } 67873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 67880fdc7489SMatthew Knepley } 67890fdc7489SMatthew Knepley 6790cc4c1da9SBarry Smith /*@ 6791bb7acecfSBarry Smith DMGetLabelValue - Get the value in a `DMLabel` for the given point, with -1 as the default 6792c58f1c22SToby Isaac 6793c58f1c22SToby Isaac Not Collective 6794c58f1c22SToby Isaac 6795c58f1c22SToby Isaac Input Parameters: 6796bb7acecfSBarry Smith + dm - The `DM` object 6797c58f1c22SToby Isaac . name - The label name 6798c58f1c22SToby Isaac - point - The mesh point 6799c58f1c22SToby Isaac 6800c58f1c22SToby Isaac Output Parameter: 6801c58f1c22SToby Isaac . value - The label value for this point, or -1 if the point is not in the label 6802c58f1c22SToby Isaac 6803c58f1c22SToby Isaac Level: beginner 6804c58f1c22SToby Isaac 68051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6806c58f1c22SToby Isaac @*/ 6807d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelValue(DM dm, const char name[], PetscInt point, PetscInt *value) 6808d71ae5a4SJacob Faibussowitsch { 6809c58f1c22SToby Isaac DMLabel label; 6810c58f1c22SToby Isaac 6811c58f1c22SToby Isaac PetscFunctionBegin; 6812c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68134f572ea9SToby Isaac PetscAssertPointer(name, 2); 68149566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 68157a8be351SBarry Smith PetscCheck(label, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No label named %s was found", name); 68169566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, value)); 68173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6818c58f1c22SToby Isaac } 6819c58f1c22SToby Isaac 6820cc4c1da9SBarry Smith /*@ 6821bb7acecfSBarry Smith DMSetLabelValue - Add a point to a `DMLabel` with given value 6822c58f1c22SToby Isaac 6823c58f1c22SToby Isaac Not Collective 6824c58f1c22SToby Isaac 6825c58f1c22SToby Isaac Input Parameters: 6826bb7acecfSBarry Smith + dm - The `DM` object 6827c58f1c22SToby Isaac . name - The label name 6828c58f1c22SToby Isaac . point - The mesh point 6829c58f1c22SToby Isaac - value - The label value for this point 6830c58f1c22SToby Isaac 6831c58f1c22SToby Isaac Output Parameter: 6832c58f1c22SToby Isaac 6833c58f1c22SToby Isaac Level: beginner 6834c58f1c22SToby Isaac 68351cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelSetValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 6836c58f1c22SToby Isaac @*/ 6837d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6838d71ae5a4SJacob Faibussowitsch { 6839c58f1c22SToby Isaac DMLabel label; 6840c58f1c22SToby Isaac 6841c58f1c22SToby Isaac PetscFunctionBegin; 6842c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68434f572ea9SToby Isaac PetscAssertPointer(name, 2); 68449566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6845c58f1c22SToby Isaac if (!label) { 68469566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 68479566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6848c58f1c22SToby Isaac } 68499566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, value)); 68503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6851c58f1c22SToby Isaac } 6852c58f1c22SToby Isaac 6853cc4c1da9SBarry Smith /*@ 6854bb7acecfSBarry Smith DMClearLabelValue - Remove a point from a `DMLabel` with given value 6855c58f1c22SToby Isaac 6856c58f1c22SToby Isaac Not Collective 6857c58f1c22SToby Isaac 6858c58f1c22SToby Isaac Input Parameters: 6859bb7acecfSBarry Smith + dm - The `DM` object 6860c58f1c22SToby Isaac . name - The label name 6861c58f1c22SToby Isaac . point - The mesh point 6862c58f1c22SToby Isaac - value - The label value for this point 6863c58f1c22SToby Isaac 6864c58f1c22SToby Isaac Level: beginner 6865c58f1c22SToby Isaac 68661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelClearValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6867c58f1c22SToby Isaac @*/ 6868d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6869d71ae5a4SJacob Faibussowitsch { 6870c58f1c22SToby Isaac DMLabel label; 6871c58f1c22SToby Isaac 6872c58f1c22SToby Isaac PetscFunctionBegin; 6873c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68744f572ea9SToby Isaac PetscAssertPointer(name, 2); 68759566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 68763ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 68779566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, value)); 68783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6879c58f1c22SToby Isaac } 6880c58f1c22SToby Isaac 6881cc4c1da9SBarry Smith /*@ 6882bb7acecfSBarry Smith DMGetLabelSize - Get the value of `DMLabelGetNumValues()` of a `DMLabel` in the `DM` 6883c58f1c22SToby Isaac 6884c58f1c22SToby Isaac Not Collective 6885c58f1c22SToby Isaac 6886c58f1c22SToby Isaac Input Parameters: 6887bb7acecfSBarry Smith + dm - The `DM` object 6888c58f1c22SToby Isaac - name - The label name 6889c58f1c22SToby Isaac 6890c58f1c22SToby Isaac Output Parameter: 6891c58f1c22SToby Isaac . size - The number of different integer ids, or 0 if the label does not exist 6892c58f1c22SToby Isaac 6893c58f1c22SToby Isaac Level: beginner 6894c58f1c22SToby Isaac 689573ff1848SBarry Smith Developer Note: 6896bb7acecfSBarry Smith This should be renamed to something like `DMGetLabelNumValues()` or removed. 6897bb7acecfSBarry Smith 68981cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetNumValues()`, `DMSetLabelValue()`, `DMGetLabel()` 6899c58f1c22SToby Isaac @*/ 6900d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelSize(DM dm, const char name[], PetscInt *size) 6901d71ae5a4SJacob Faibussowitsch { 6902c58f1c22SToby Isaac DMLabel label; 6903c58f1c22SToby Isaac 6904c58f1c22SToby Isaac PetscFunctionBegin; 6905c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69064f572ea9SToby Isaac PetscAssertPointer(name, 2); 69074f572ea9SToby Isaac PetscAssertPointer(size, 3); 69089566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6909c58f1c22SToby Isaac *size = 0; 69103ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69119566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, size)); 69123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6913c58f1c22SToby Isaac } 6914c58f1c22SToby Isaac 6915cc4c1da9SBarry Smith /*@ 6916bb7acecfSBarry Smith DMGetLabelIdIS - Get the `DMLabelGetValueIS()` from a `DMLabel` in the `DM` 6917c58f1c22SToby Isaac 6918c58f1c22SToby Isaac Not Collective 6919c58f1c22SToby Isaac 6920c58f1c22SToby Isaac Input Parameters: 692160225df5SJacob Faibussowitsch + dm - The `DM` object 6922c58f1c22SToby Isaac - name - The label name 6923c58f1c22SToby Isaac 6924c58f1c22SToby Isaac Output Parameter: 692520f4b53cSBarry Smith . ids - The integer ids, or `NULL` if the label does not exist 6926c58f1c22SToby Isaac 6927c58f1c22SToby Isaac Level: beginner 6928c58f1c22SToby Isaac 69291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValueIS()`, `DMGetLabelSize()` 6930c58f1c22SToby Isaac @*/ 6931d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelIdIS(DM dm, const char name[], IS *ids) 6932d71ae5a4SJacob Faibussowitsch { 6933c58f1c22SToby Isaac DMLabel label; 6934c58f1c22SToby Isaac 6935c58f1c22SToby Isaac PetscFunctionBegin; 6936c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69374f572ea9SToby Isaac PetscAssertPointer(name, 2); 69384f572ea9SToby Isaac PetscAssertPointer(ids, 3); 69399566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6940c58f1c22SToby Isaac *ids = NULL; 6941dab2e251SBlaise Bourdin if (label) { 69429566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, ids)); 6943dab2e251SBlaise Bourdin } else { 6944dab2e251SBlaise Bourdin /* returning an empty IS */ 69459566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_USE_POINTER, ids)); 6946dab2e251SBlaise Bourdin } 69473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6948c58f1c22SToby Isaac } 6949c58f1c22SToby Isaac 6950cc4c1da9SBarry Smith /*@ 6951c58f1c22SToby Isaac DMGetStratumSize - Get the number of points in a label stratum 6952c58f1c22SToby Isaac 6953c58f1c22SToby Isaac Not Collective 6954c58f1c22SToby Isaac 6955c58f1c22SToby Isaac Input Parameters: 6956bb7acecfSBarry Smith + dm - The `DM` object 6957b6971eaeSBarry Smith . name - The label name of the stratum 6958c58f1c22SToby Isaac - value - The stratum value 6959c58f1c22SToby Isaac 6960c58f1c22SToby Isaac Output Parameter: 6961bb7acecfSBarry Smith . size - The number of points, also called the stratum size 6962c58f1c22SToby Isaac 6963c58f1c22SToby Isaac Level: beginner 6964c58f1c22SToby Isaac 69651cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumSize()`, `DMGetLabelSize()`, `DMGetLabelIds()` 6966c58f1c22SToby Isaac @*/ 6967d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumSize(DM dm, const char name[], PetscInt value, PetscInt *size) 6968d71ae5a4SJacob Faibussowitsch { 6969c58f1c22SToby Isaac DMLabel label; 6970c58f1c22SToby Isaac 6971c58f1c22SToby Isaac PetscFunctionBegin; 6972c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69734f572ea9SToby Isaac PetscAssertPointer(name, 2); 69744f572ea9SToby Isaac PetscAssertPointer(size, 4); 69759566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6976c58f1c22SToby Isaac *size = 0; 69773ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69789566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, value, size)); 69793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6980c58f1c22SToby Isaac } 6981c58f1c22SToby Isaac 6982cc4c1da9SBarry Smith /*@ 6983c58f1c22SToby Isaac DMGetStratumIS - Get the points in a label stratum 6984c58f1c22SToby Isaac 6985c58f1c22SToby Isaac Not Collective 6986c58f1c22SToby Isaac 6987c58f1c22SToby Isaac Input Parameters: 6988bb7acecfSBarry Smith + dm - The `DM` object 6989c58f1c22SToby Isaac . name - The label name 6990c58f1c22SToby Isaac - value - The stratum value 6991c58f1c22SToby Isaac 6992c58f1c22SToby Isaac Output Parameter: 699320f4b53cSBarry Smith . points - The stratum points, or `NULL` if the label does not exist or does not have that value 6994c58f1c22SToby Isaac 6995c58f1c22SToby Isaac Level: beginner 6996c58f1c22SToby Isaac 69971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumIS()`, `DMGetStratumSize()` 6998c58f1c22SToby Isaac @*/ 6999d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumIS(DM dm, const char name[], PetscInt value, IS *points) 7000d71ae5a4SJacob Faibussowitsch { 7001c58f1c22SToby Isaac DMLabel label; 7002c58f1c22SToby Isaac 7003c58f1c22SToby Isaac PetscFunctionBegin; 7004c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70054f572ea9SToby Isaac PetscAssertPointer(name, 2); 70064f572ea9SToby Isaac PetscAssertPointer(points, 4); 70079566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 7008c58f1c22SToby Isaac *points = NULL; 70093ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 70109566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, value, points)); 70113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7012c58f1c22SToby Isaac } 7013c58f1c22SToby Isaac 7014cc4c1da9SBarry Smith /*@ 70159044fa66SMatthew G. Knepley DMSetStratumIS - Set the points in a label stratum 70164de306b1SToby Isaac 70174de306b1SToby Isaac Not Collective 70184de306b1SToby Isaac 70194de306b1SToby Isaac Input Parameters: 7020bb7acecfSBarry Smith + dm - The `DM` object 70214de306b1SToby Isaac . name - The label name 70224de306b1SToby Isaac . value - The stratum value 70234de306b1SToby Isaac - points - The stratum points 70244de306b1SToby Isaac 70254de306b1SToby Isaac Level: beginner 70264de306b1SToby Isaac 70271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMClearLabelStratum()`, `DMLabelClearStratum()`, `DMLabelSetStratumIS()`, `DMGetStratumSize()` 70284de306b1SToby Isaac @*/ 7029d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetStratumIS(DM dm, const char name[], PetscInt value, IS points) 7030d71ae5a4SJacob Faibussowitsch { 70314de306b1SToby Isaac DMLabel label; 70324de306b1SToby Isaac 70334de306b1SToby Isaac PetscFunctionBegin; 70344de306b1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70354f572ea9SToby Isaac PetscAssertPointer(name, 2); 7036292bffcbSToby Isaac PetscValidHeaderSpecific(points, IS_CLASSID, 4); 70379566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 70383ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 70399566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(label, value, points)); 70403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70414de306b1SToby Isaac } 70424de306b1SToby Isaac 7043cc4c1da9SBarry Smith /*@ 7044bb7acecfSBarry Smith DMClearLabelStratum - Remove all points from a stratum from a `DMLabel` 7045c58f1c22SToby Isaac 7046c58f1c22SToby Isaac Not Collective 7047c58f1c22SToby Isaac 7048c58f1c22SToby Isaac Input Parameters: 7049bb7acecfSBarry Smith + dm - The `DM` object 7050c58f1c22SToby Isaac . name - The label name 7051c58f1c22SToby Isaac - value - The label value for this point 7052c58f1c22SToby Isaac 7053c58f1c22SToby Isaac Output Parameter: 7054c58f1c22SToby Isaac 7055c58f1c22SToby Isaac Level: beginner 7056c58f1c22SToby Isaac 70571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMLabelClearStratum()`, `DMSetLabelValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 7058c58f1c22SToby Isaac @*/ 7059d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelStratum(DM dm, const char name[], PetscInt value) 7060d71ae5a4SJacob Faibussowitsch { 7061c58f1c22SToby Isaac DMLabel label; 7062c58f1c22SToby Isaac 7063c58f1c22SToby Isaac PetscFunctionBegin; 7064c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70654f572ea9SToby Isaac PetscAssertPointer(name, 2); 70669566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 70673ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 70689566063dSJacob Faibussowitsch PetscCall(DMLabelClearStratum(label, value)); 70693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7070c58f1c22SToby Isaac } 7071c58f1c22SToby Isaac 7072c58f1c22SToby Isaac /*@ 7073bb7acecfSBarry Smith DMGetNumLabels - Return the number of labels defined by on the `DM` 7074c58f1c22SToby Isaac 7075c58f1c22SToby Isaac Not Collective 7076c58f1c22SToby Isaac 7077c58f1c22SToby Isaac Input Parameter: 7078bb7acecfSBarry Smith . dm - The `DM` object 7079c58f1c22SToby Isaac 7080c58f1c22SToby Isaac Output Parameter: 7081c58f1c22SToby Isaac . numLabels - the number of Labels 7082c58f1c22SToby Isaac 7083c58f1c22SToby Isaac Level: intermediate 7084c58f1c22SToby Isaac 70851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabelName()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7086c58f1c22SToby Isaac @*/ 7087d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumLabels(DM dm, PetscInt *numLabels) 7088d71ae5a4SJacob Faibussowitsch { 70895d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7090c58f1c22SToby Isaac PetscInt n = 0; 7091c58f1c22SToby Isaac 7092c58f1c22SToby Isaac PetscFunctionBegin; 7093c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70944f572ea9SToby Isaac PetscAssertPointer(numLabels, 2); 70959371c9d4SSatish Balay while (next) { 70969371c9d4SSatish Balay ++n; 70979371c9d4SSatish Balay next = next->next; 70989371c9d4SSatish Balay } 7099c58f1c22SToby Isaac *numLabels = n; 71003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7101c58f1c22SToby Isaac } 7102c58f1c22SToby Isaac 7103cc4c1da9SBarry Smith /*@ 7104c58f1c22SToby Isaac DMGetLabelName - Return the name of nth label 7105c58f1c22SToby Isaac 7106c58f1c22SToby Isaac Not Collective 7107c58f1c22SToby Isaac 7108c58f1c22SToby Isaac Input Parameters: 7109bb7acecfSBarry Smith + dm - The `DM` object 7110c58f1c22SToby Isaac - n - the label number 7111c58f1c22SToby Isaac 7112c58f1c22SToby Isaac Output Parameter: 7113c58f1c22SToby Isaac . name - the label name 7114c58f1c22SToby Isaac 7115c58f1c22SToby Isaac Level: intermediate 7116c58f1c22SToby Isaac 711773ff1848SBarry Smith Developer Note: 7118bb7acecfSBarry Smith Some of the functions that appropriate on labels using their number have the suffix ByNum, others do not. 7119bb7acecfSBarry Smith 71201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7121c58f1c22SToby Isaac @*/ 7122cc4c1da9SBarry Smith PetscErrorCode DMGetLabelName(DM dm, PetscInt n, const char *name[]) 7123d71ae5a4SJacob Faibussowitsch { 71245d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7125c58f1c22SToby Isaac PetscInt l = 0; 7126c58f1c22SToby Isaac 7127c58f1c22SToby Isaac PetscFunctionBegin; 7128c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71294f572ea9SToby Isaac PetscAssertPointer(name, 3); 7130c58f1c22SToby Isaac while (next) { 7131c58f1c22SToby Isaac if (l == n) { 71329566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, name)); 71333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7134c58f1c22SToby Isaac } 7135c58f1c22SToby Isaac ++l; 7136c58f1c22SToby Isaac next = next->next; 7137c58f1c22SToby Isaac } 713863a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 7139c58f1c22SToby Isaac } 7140c58f1c22SToby Isaac 7141cc4c1da9SBarry Smith /*@ 7142bb7acecfSBarry Smith DMHasLabel - Determine whether the `DM` has a label of a given name 7143c58f1c22SToby Isaac 7144c58f1c22SToby Isaac Not Collective 7145c58f1c22SToby Isaac 7146c58f1c22SToby Isaac Input Parameters: 7147bb7acecfSBarry Smith + dm - The `DM` object 7148c58f1c22SToby Isaac - name - The label name 7149c58f1c22SToby Isaac 7150c58f1c22SToby Isaac Output Parameter: 7151bb7acecfSBarry Smith . hasLabel - `PETSC_TRUE` if the label is present 7152c58f1c22SToby Isaac 7153c58f1c22SToby Isaac Level: intermediate 7154c58f1c22SToby Isaac 71551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabel()`, `DMGetLabelByNum()`, `DMCreateLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7156c58f1c22SToby Isaac @*/ 7157d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasLabel(DM dm, const char name[], PetscBool *hasLabel) 7158d71ae5a4SJacob Faibussowitsch { 71595d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7160d67d17b1SMatthew G. Knepley const char *lname; 7161c58f1c22SToby Isaac 7162c58f1c22SToby Isaac PetscFunctionBegin; 7163c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71644f572ea9SToby Isaac PetscAssertPointer(name, 2); 71654f572ea9SToby Isaac PetscAssertPointer(hasLabel, 3); 7166c58f1c22SToby Isaac *hasLabel = PETSC_FALSE; 7167c58f1c22SToby Isaac while (next) { 71689566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 71699566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, hasLabel)); 7170c58f1c22SToby Isaac if (*hasLabel) break; 7171c58f1c22SToby Isaac next = next->next; 7172c58f1c22SToby Isaac } 71733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7174c58f1c22SToby Isaac } 7175c58f1c22SToby Isaac 7176a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown 7177cc4c1da9SBarry Smith /*@ 717820f4b53cSBarry Smith DMGetLabel - Return the label of a given name, or `NULL`, from a `DM` 7179c58f1c22SToby Isaac 7180c58f1c22SToby Isaac Not Collective 7181c58f1c22SToby Isaac 7182c58f1c22SToby Isaac Input Parameters: 7183bb7acecfSBarry Smith + dm - The `DM` object 7184c58f1c22SToby Isaac - name - The label name 7185c58f1c22SToby Isaac 7186c58f1c22SToby Isaac Output Parameter: 718720f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent 7188c58f1c22SToby Isaac 7189bb7acecfSBarry Smith Default labels in a `DMPLEX`: 7190bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 7191bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 7192bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 7193bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 7194bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 7195bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 71966d7c9049SMatthew G. Knepley 7197c58f1c22SToby Isaac Level: intermediate 7198c58f1c22SToby Isaac 719960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMHasLabel()`, `DMGetLabelByNum()`, `DMAddLabel()`, `DMCreateLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 7200c58f1c22SToby Isaac @*/ 7201d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabel(DM dm, const char name[], DMLabel *label) 7202d71ae5a4SJacob Faibussowitsch { 72035d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7204c58f1c22SToby Isaac PetscBool hasLabel; 7205d67d17b1SMatthew G. Knepley const char *lname; 7206c58f1c22SToby Isaac 7207c58f1c22SToby Isaac PetscFunctionBegin; 7208c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72094f572ea9SToby Isaac PetscAssertPointer(name, 2); 72104f572ea9SToby Isaac PetscAssertPointer(label, 3); 7211c58f1c22SToby Isaac *label = NULL; 7212c58f1c22SToby Isaac while (next) { 72139566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 72149566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 7215c58f1c22SToby Isaac if (hasLabel) { 7216c58f1c22SToby Isaac *label = next->label; 7217c58f1c22SToby Isaac break; 7218c58f1c22SToby Isaac } 7219c58f1c22SToby Isaac next = next->next; 7220c58f1c22SToby Isaac } 72213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7222c58f1c22SToby Isaac } 7223c58f1c22SToby Isaac 7224cc4c1da9SBarry Smith /*@ 7225bb7acecfSBarry Smith DMGetLabelByNum - Return the nth label on a `DM` 7226c58f1c22SToby Isaac 7227c58f1c22SToby Isaac Not Collective 7228c58f1c22SToby Isaac 7229c58f1c22SToby Isaac Input Parameters: 7230bb7acecfSBarry Smith + dm - The `DM` object 7231c58f1c22SToby Isaac - n - the label number 7232c58f1c22SToby Isaac 7233c58f1c22SToby Isaac Output Parameter: 7234c58f1c22SToby Isaac . label - the label 7235c58f1c22SToby Isaac 7236c58f1c22SToby Isaac Level: intermediate 7237c58f1c22SToby Isaac 72381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7239c58f1c22SToby Isaac @*/ 7240d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelByNum(DM dm, PetscInt n, DMLabel *label) 7241d71ae5a4SJacob Faibussowitsch { 72425d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7243c58f1c22SToby Isaac PetscInt l = 0; 7244c58f1c22SToby Isaac 7245c58f1c22SToby Isaac PetscFunctionBegin; 7246c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72474f572ea9SToby Isaac PetscAssertPointer(label, 3); 7248c58f1c22SToby Isaac while (next) { 7249c58f1c22SToby Isaac if (l == n) { 7250c58f1c22SToby Isaac *label = next->label; 72513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7252c58f1c22SToby Isaac } 7253c58f1c22SToby Isaac ++l; 7254c58f1c22SToby Isaac next = next->next; 7255c58f1c22SToby Isaac } 725663a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 7257c58f1c22SToby Isaac } 7258c58f1c22SToby Isaac 7259cc4c1da9SBarry Smith /*@ 7260bb7acecfSBarry Smith DMAddLabel - Add the label to this `DM` 7261c58f1c22SToby Isaac 7262c58f1c22SToby Isaac Not Collective 7263c58f1c22SToby Isaac 7264c58f1c22SToby Isaac Input Parameters: 7265bb7acecfSBarry Smith + dm - The `DM` object 7266bb7acecfSBarry Smith - label - The `DMLabel` 7267c58f1c22SToby Isaac 7268c58f1c22SToby Isaac Level: developer 7269c58f1c22SToby Isaac 727060225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7271c58f1c22SToby Isaac @*/ 7272d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddLabel(DM dm, DMLabel label) 7273d71ae5a4SJacob Faibussowitsch { 72745d80c0bfSVaclav Hapla DMLabelLink l, *p, tmpLabel; 7275c58f1c22SToby Isaac PetscBool hasLabel; 7276d67d17b1SMatthew G. Knepley const char *lname; 72775d80c0bfSVaclav Hapla PetscBool flg; 7278c58f1c22SToby Isaac 7279c58f1c22SToby Isaac PetscFunctionBegin; 7280c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72819566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &lname)); 72829566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, lname, &hasLabel)); 72837a8be351SBarry Smith PetscCheck(!hasLabel, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in this DM", lname); 72849566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(1, &tmpLabel)); 7285c58f1c22SToby Isaac tmpLabel->label = label; 7286c58f1c22SToby Isaac tmpLabel->output = PETSC_TRUE; 72875d80c0bfSVaclav Hapla for (p = &dm->labels; (l = *p); p = &l->next) { } 72885d80c0bfSVaclav Hapla *p = tmpLabel; 72899566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 72909566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 72915d80c0bfSVaclav Hapla if (flg) dm->depthLabel = label; 72929566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 7293ba2698f1SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 72943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7295c58f1c22SToby Isaac } 7296c58f1c22SToby Isaac 7297a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown 7298cc4c1da9SBarry Smith /*@ 72994a7ee7d0SMatthew G. Knepley DMSetLabel - Replaces the label of a given name, or ignores it if the name is not present 73004a7ee7d0SMatthew G. Knepley 73014a7ee7d0SMatthew G. Knepley Not Collective 73024a7ee7d0SMatthew G. Knepley 73034a7ee7d0SMatthew G. Knepley Input Parameters: 7304bb7acecfSBarry Smith + dm - The `DM` object 7305bb7acecfSBarry Smith - label - The `DMLabel`, having the same name, to substitute 73064a7ee7d0SMatthew G. Knepley 7307bb7acecfSBarry Smith Default labels in a `DMPLEX`: 7308bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 7309bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 7310bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 7311bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 7312bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 7313bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 73144a7ee7d0SMatthew G. Knepley 73154a7ee7d0SMatthew G. Knepley Level: intermediate 73164a7ee7d0SMatthew G. Knepley 73171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 73184a7ee7d0SMatthew G. Knepley @*/ 7319d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabel(DM dm, DMLabel label) 7320d71ae5a4SJacob Faibussowitsch { 73214a7ee7d0SMatthew G. Knepley DMLabelLink next = dm->labels; 73224a7ee7d0SMatthew G. Knepley PetscBool hasLabel, flg; 73234a7ee7d0SMatthew G. Knepley const char *name, *lname; 73244a7ee7d0SMatthew G. Knepley 73254a7ee7d0SMatthew G. Knepley PetscFunctionBegin; 73264a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73274a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 73289566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 73294a7ee7d0SMatthew G. Knepley while (next) { 73309566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 73319566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 73324a7ee7d0SMatthew G. Knepley if (hasLabel) { 73339566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 73349566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 73354a7ee7d0SMatthew G. Knepley if (flg) dm->depthLabel = label; 73369566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 73374a7ee7d0SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 73389566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 73394a7ee7d0SMatthew G. Knepley next->label = label; 73404a7ee7d0SMatthew G. Knepley break; 73414a7ee7d0SMatthew G. Knepley } 73424a7ee7d0SMatthew G. Knepley next = next->next; 73434a7ee7d0SMatthew G. Knepley } 73443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 73454a7ee7d0SMatthew G. Knepley } 73464a7ee7d0SMatthew G. Knepley 7347cc4c1da9SBarry Smith /*@ 7348bb7acecfSBarry Smith DMRemoveLabel - Remove the label given by name from this `DM` 7349c58f1c22SToby Isaac 7350c58f1c22SToby Isaac Not Collective 7351c58f1c22SToby Isaac 7352c58f1c22SToby Isaac Input Parameters: 7353bb7acecfSBarry Smith + dm - The `DM` object 7354c58f1c22SToby Isaac - name - The label name 7355c58f1c22SToby Isaac 7356c58f1c22SToby Isaac Output Parameter: 735720f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent. Pass in `NULL` to call `DMLabelDestroy()` on the label, otherwise the 7358bb7acecfSBarry Smith caller is responsible for calling `DMLabelDestroy()`. 7359c58f1c22SToby Isaac 7360c58f1c22SToby Isaac Level: developer 7361c58f1c22SToby Isaac 73621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabelBySelf()` 7363c58f1c22SToby Isaac @*/ 7364d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabel(DM dm, const char name[], DMLabel *label) 7365d71ae5a4SJacob Faibussowitsch { 736695d578d6SVaclav Hapla DMLabelLink link, *pnext; 7367c58f1c22SToby Isaac PetscBool hasLabel; 7368d67d17b1SMatthew G. Knepley const char *lname; 7369c58f1c22SToby Isaac 7370c58f1c22SToby Isaac PetscFunctionBegin; 7371c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73724f572ea9SToby Isaac PetscAssertPointer(name, 2); 7373e5472504SVaclav Hapla if (label) { 73744f572ea9SToby Isaac PetscAssertPointer(label, 3); 7375c58f1c22SToby Isaac *label = NULL; 7376e5472504SVaclav Hapla } 73775d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 73789566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)link->label, &lname)); 73799566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 7380c58f1c22SToby Isaac if (hasLabel) { 738195d578d6SVaclav Hapla *pnext = link->next; /* Remove from list */ 73829566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &hasLabel)); 738395d578d6SVaclav Hapla if (hasLabel) dm->depthLabel = NULL; 73849566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &hasLabel)); 7385ba2698f1SMatthew G. Knepley if (hasLabel) dm->celltypeLabel = NULL; 738695d578d6SVaclav Hapla if (label) *label = link->label; 73879566063dSJacob Faibussowitsch else PetscCall(DMLabelDestroy(&link->label)); 73889566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7389c58f1c22SToby Isaac break; 7390c58f1c22SToby Isaac } 7391c58f1c22SToby Isaac } 73923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7393c58f1c22SToby Isaac } 7394c58f1c22SToby Isaac 7395306894acSVaclav Hapla /*@ 7396bb7acecfSBarry Smith DMRemoveLabelBySelf - Remove the label from this `DM` 7397306894acSVaclav Hapla 7398306894acSVaclav Hapla Not Collective 7399306894acSVaclav Hapla 7400306894acSVaclav Hapla Input Parameters: 7401bb7acecfSBarry Smith + dm - The `DM` object 7402bb7acecfSBarry Smith . label - The `DMLabel` to be removed from the `DM` 740320f4b53cSBarry Smith - failNotFound - Should it fail if the label is not found in the `DM`? 7404306894acSVaclav Hapla 7405306894acSVaclav Hapla Level: developer 7406306894acSVaclav Hapla 7407bb7acecfSBarry Smith Note: 7408306894acSVaclav Hapla Only exactly the same instance is removed if found, name match is ignored. 7409bb7acecfSBarry Smith If the `DM` has an exclusive reference to the label, the label gets destroyed and 7410306894acSVaclav Hapla *label nullified. 7411306894acSVaclav Hapla 74121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()` `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabel()` 7413306894acSVaclav Hapla @*/ 7414d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabelBySelf(DM dm, DMLabel *label, PetscBool failNotFound) 7415d71ae5a4SJacob Faibussowitsch { 741643e45a93SVaclav Hapla DMLabelLink link, *pnext; 7417306894acSVaclav Hapla PetscBool hasLabel = PETSC_FALSE; 7418306894acSVaclav Hapla 7419306894acSVaclav Hapla PetscFunctionBegin; 7420306894acSVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 74214f572ea9SToby Isaac PetscAssertPointer(label, 2); 74223ba16761SJacob Faibussowitsch if (!*label && !failNotFound) PetscFunctionReturn(PETSC_SUCCESS); 7423306894acSVaclav Hapla PetscValidHeaderSpecific(*label, DMLABEL_CLASSID, 2); 7424306894acSVaclav Hapla PetscValidLogicalCollectiveBool(dm, failNotFound, 3); 74255d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 742643e45a93SVaclav Hapla if (*label == link->label) { 7427306894acSVaclav Hapla hasLabel = PETSC_TRUE; 742843e45a93SVaclav Hapla *pnext = link->next; /* Remove from list */ 7429306894acSVaclav Hapla if (*label == dm->depthLabel) dm->depthLabel = NULL; 7430ba2698f1SMatthew G. Knepley if (*label == dm->celltypeLabel) dm->celltypeLabel = NULL; 743143e45a93SVaclav Hapla if (((PetscObject)link->label)->refct < 2) *label = NULL; /* nullify if exclusive reference */ 74329566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&link->label)); 74339566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7434306894acSVaclav Hapla break; 7435306894acSVaclav Hapla } 7436306894acSVaclav Hapla } 74377a8be351SBarry Smith PetscCheck(hasLabel || !failNotFound, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Given label not found in DM"); 74383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7439306894acSVaclav Hapla } 7440306894acSVaclav Hapla 7441cc4c1da9SBarry Smith /*@ 7442c58f1c22SToby Isaac DMGetLabelOutput - Get the output flag for a given label 7443c58f1c22SToby Isaac 7444c58f1c22SToby Isaac Not Collective 7445c58f1c22SToby Isaac 7446c58f1c22SToby Isaac Input Parameters: 7447bb7acecfSBarry Smith + dm - The `DM` object 7448c58f1c22SToby Isaac - name - The label name 7449c58f1c22SToby Isaac 7450c58f1c22SToby Isaac Output Parameter: 7451c58f1c22SToby Isaac . output - The flag for output 7452c58f1c22SToby Isaac 7453c58f1c22SToby Isaac Level: developer 7454c58f1c22SToby Isaac 74551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMSetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7456c58f1c22SToby Isaac @*/ 7457d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelOutput(DM dm, const char name[], PetscBool *output) 7458d71ae5a4SJacob Faibussowitsch { 74595d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7460d67d17b1SMatthew G. Knepley const char *lname; 7461c58f1c22SToby Isaac 7462c58f1c22SToby Isaac PetscFunctionBegin; 7463c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 74644f572ea9SToby Isaac PetscAssertPointer(name, 2); 74654f572ea9SToby Isaac PetscAssertPointer(output, 3); 7466c58f1c22SToby Isaac while (next) { 7467c58f1c22SToby Isaac PetscBool flg; 7468c58f1c22SToby Isaac 74699566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 74709566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 74719371c9d4SSatish Balay if (flg) { 74729371c9d4SSatish Balay *output = next->output; 74733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 74749371c9d4SSatish Balay } 7475c58f1c22SToby Isaac next = next->next; 7476c58f1c22SToby Isaac } 747798921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7478c58f1c22SToby Isaac } 7479c58f1c22SToby Isaac 7480cc4c1da9SBarry Smith /*@ 7481bb7acecfSBarry Smith DMSetLabelOutput - Set if a given label should be saved to a `PetscViewer` in calls to `DMView()` 7482c58f1c22SToby Isaac 7483c58f1c22SToby Isaac Not Collective 7484c58f1c22SToby Isaac 7485c58f1c22SToby Isaac Input Parameters: 7486bb7acecfSBarry Smith + dm - The `DM` object 7487c58f1c22SToby Isaac . name - The label name 7488bb7acecfSBarry Smith - output - `PETSC_TRUE` to save the label to the viewer 7489c58f1c22SToby Isaac 7490c58f1c22SToby Isaac Level: developer 7491c58f1c22SToby Isaac 74921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetOutputFlag()`, `DMGetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7493c58f1c22SToby Isaac @*/ 7494d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelOutput(DM dm, const char name[], PetscBool output) 7495d71ae5a4SJacob Faibussowitsch { 74965d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7497d67d17b1SMatthew G. Knepley const char *lname; 7498c58f1c22SToby Isaac 7499c58f1c22SToby Isaac PetscFunctionBegin; 7500c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 75014f572ea9SToby Isaac PetscAssertPointer(name, 2); 7502c58f1c22SToby Isaac while (next) { 7503c58f1c22SToby Isaac PetscBool flg; 7504c58f1c22SToby Isaac 75059566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 75069566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 75079371c9d4SSatish Balay if (flg) { 75089371c9d4SSatish Balay next->output = output; 75093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 75109371c9d4SSatish Balay } 7511c58f1c22SToby Isaac next = next->next; 7512c58f1c22SToby Isaac } 751398921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7514c58f1c22SToby Isaac } 7515c58f1c22SToby Isaac 7516c58f1c22SToby Isaac /*@ 7517bb7acecfSBarry Smith DMCopyLabels - Copy labels from one `DM` mesh to another `DM` with a superset of the points 7518c58f1c22SToby Isaac 751920f4b53cSBarry Smith Collective 7520c58f1c22SToby Isaac 7521d8d19677SJose E. Roman Input Parameters: 7522bb7acecfSBarry Smith + dmA - The `DM` object with initial labels 7523bb7acecfSBarry Smith . dmB - The `DM` object to which labels are copied 7524bb7acecfSBarry Smith . mode - Copy labels by pointers (`PETSC_OWN_POINTER`) or duplicate them (`PETSC_COPY_VALUES`) 7525bb7acecfSBarry Smith . all - Copy all labels including "depth", "dim", and "celltype" (`PETSC_TRUE`) which are otherwise ignored (`PETSC_FALSE`) 7526bb7acecfSBarry Smith - emode - How to behave when a `DMLabel` in the source and destination `DM`s with the same name is encountered (see `DMCopyLabelsMode`) 7527c58f1c22SToby Isaac 7528c58f1c22SToby Isaac Level: intermediate 7529c58f1c22SToby Isaac 7530bb7acecfSBarry Smith Note: 75312cbb9b06SVaclav Hapla This is typically used when interpolating or otherwise adding to a mesh, or testing. 7532c58f1c22SToby Isaac 75331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode` 7534c58f1c22SToby Isaac @*/ 7535d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyLabels(DM dmA, DM dmB, PetscCopyMode mode, PetscBool all, DMCopyLabelsMode emode) 7536d71ae5a4SJacob Faibussowitsch { 75372cbb9b06SVaclav Hapla DMLabel label, labelNew, labelOld; 7538c58f1c22SToby Isaac const char *name; 7539c58f1c22SToby Isaac PetscBool flg; 75405d80c0bfSVaclav Hapla DMLabelLink link; 7541c58f1c22SToby Isaac 75425d80c0bfSVaclav Hapla PetscFunctionBegin; 75435d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 75445d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 75455d80c0bfSVaclav Hapla PetscValidLogicalCollectiveEnum(dmA, mode, 3); 75465d80c0bfSVaclav Hapla PetscValidLogicalCollectiveBool(dmA, all, 4); 75477a8be351SBarry Smith PetscCheck(mode != PETSC_USE_POINTER, PetscObjectComm((PetscObject)dmA), PETSC_ERR_SUP, "PETSC_USE_POINTER not supported for objects"); 75483ba16761SJacob Faibussowitsch if (dmA == dmB) PetscFunctionReturn(PETSC_SUCCESS); 75495d80c0bfSVaclav Hapla for (link = dmA->labels; link; link = link->next) { 75505d80c0bfSVaclav Hapla label = link->label; 75519566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 75525d80c0bfSVaclav Hapla if (!all) { 75539566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &flg)); 7554c58f1c22SToby Isaac if (flg) continue; 75559566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "dim", &flg)); 75567d5acc75SStefano Zampini if (flg) continue; 75579566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &flg)); 7558ba2698f1SMatthew G. Knepley if (flg) continue; 75595d80c0bfSVaclav Hapla } 75609566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmB, name, &labelOld)); 75612cbb9b06SVaclav Hapla if (labelOld) { 75622cbb9b06SVaclav Hapla switch (emode) { 7563d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_KEEP: 7564d71ae5a4SJacob Faibussowitsch continue; 7565d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_REPLACE: 7566d71ae5a4SJacob Faibussowitsch PetscCall(DMRemoveLabelBySelf(dmB, &labelOld, PETSC_TRUE)); 7567d71ae5a4SJacob Faibussowitsch break; 7568d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_FAIL: 7569d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in destination DM", name); 7570d71ae5a4SJacob Faibussowitsch default: 7571d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Unhandled DMCopyLabelsMode %d", (int)emode); 75722cbb9b06SVaclav Hapla } 75732cbb9b06SVaclav Hapla } 75745d80c0bfSVaclav Hapla if (mode == PETSC_COPY_VALUES) { 75759566063dSJacob Faibussowitsch PetscCall(DMLabelDuplicate(label, &labelNew)); 75765d80c0bfSVaclav Hapla } else { 75775d80c0bfSVaclav Hapla labelNew = label; 75785d80c0bfSVaclav Hapla } 75799566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dmB, labelNew)); 75809566063dSJacob Faibussowitsch if (mode == PETSC_COPY_VALUES) PetscCall(DMLabelDestroy(&labelNew)); 7581c58f1c22SToby Isaac } 75823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7583c58f1c22SToby Isaac } 7584461a15a0SLisandro Dalcin 7585609dae6eSVaclav Hapla /*@C 7586b4028c23SStefano Zampini DMCompareLabels - Compare labels between two `DM` objects 7587609dae6eSVaclav Hapla 758820f4b53cSBarry Smith Collective; No Fortran Support 7589609dae6eSVaclav Hapla 7590609dae6eSVaclav Hapla Input Parameters: 7591bb7acecfSBarry Smith + dm0 - First `DM` object 7592bb7acecfSBarry Smith - dm1 - Second `DM` object 7593609dae6eSVaclav Hapla 7594a4e35b19SJacob Faibussowitsch Output Parameters: 7595ce78bad3SBarry Smith + equal - (Optional) Flag whether labels of `dm0` and `dm1` are the same 759620f4b53cSBarry Smith - message - (Optional) Message describing the difference, or `NULL` if there is no difference 7597609dae6eSVaclav Hapla 7598609dae6eSVaclav Hapla Level: intermediate 7599609dae6eSVaclav Hapla 7600609dae6eSVaclav Hapla Notes: 7601bb7acecfSBarry Smith The output flag equal will be the same on all processes. 7602bb7acecfSBarry Smith 760320f4b53cSBarry Smith If equal is passed as `NULL` and difference is found, an error is thrown on all processes. 7604bb7acecfSBarry Smith 760520f4b53cSBarry Smith Make sure to pass equal is `NULL` on all processes or none of them. 7606609dae6eSVaclav Hapla 76075efe38ccSVaclav Hapla The output message is set independently on each rank. 7608bb7acecfSBarry Smith 7609bb7acecfSBarry Smith message must be freed with `PetscFree()` 7610bb7acecfSBarry Smith 7611ce78bad3SBarry Smith If message is passed as `NULL` and a difference is found, the difference description is printed to `stderr` in synchronized manner. 7612bb7acecfSBarry Smith 761320f4b53cSBarry Smith Make sure to pass message as `NULL` on all processes or no processes. 7614609dae6eSVaclav Hapla 7615609dae6eSVaclav Hapla Labels are matched by name. If the number of labels and their names are equal, 7616bb7acecfSBarry Smith `DMLabelCompare()` is used to compare each pair of labels with the same name. 7617609dae6eSVaclav Hapla 7618cc4c1da9SBarry Smith Developer Note: 7619ce78bad3SBarry Smith Cannot automatically generate the Fortran stub because `message` must be freed with `PetscFree()` 7620cc4c1da9SBarry Smith 76211cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`, `DMLabelCompare()` 7622609dae6eSVaclav Hapla @*/ 7623ce78bad3SBarry Smith PetscErrorCode DMCompareLabels(DM dm0, DM dm1, PetscBool *equal, char *message[]) PeNS 7624d71ae5a4SJacob Faibussowitsch { 76255efe38ccSVaclav Hapla PetscInt n, i; 7626609dae6eSVaclav Hapla char msg[PETSC_MAX_PATH_LEN] = ""; 76275efe38ccSVaclav Hapla PetscBool eq; 7628609dae6eSVaclav Hapla MPI_Comm comm; 76295efe38ccSVaclav Hapla PetscMPIInt rank; 7630609dae6eSVaclav Hapla 7631609dae6eSVaclav Hapla PetscFunctionBegin; 7632609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm0, DM_CLASSID, 1); 7633609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm1, DM_CLASSID, 2); 7634609dae6eSVaclav Hapla PetscCheckSameComm(dm0, 1, dm1, 2); 76354f572ea9SToby Isaac if (equal) PetscAssertPointer(equal, 3); 76364f572ea9SToby Isaac if (message) PetscAssertPointer(message, 4); 76379566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm0, &comm)); 76389566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 76395efe38ccSVaclav Hapla { 76405efe38ccSVaclav Hapla PetscInt n1; 76415efe38ccSVaclav Hapla 76429566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm0, &n)); 76439566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm1, &n1)); 76445efe38ccSVaclav Hapla eq = (PetscBool)(n == n1); 764548a46eb9SPierre Jolivet if (!eq) PetscCall(PetscSNPrintf(msg, sizeof(msg), "Number of labels in dm0 = %" PetscInt_FMT " != %" PetscInt_FMT " = Number of labels in dm1", n, n1)); 7646462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 76475efe38ccSVaclav Hapla if (!eq) goto finish; 76485efe38ccSVaclav Hapla } 76495efe38ccSVaclav Hapla for (i = 0; i < n; i++) { 7650609dae6eSVaclav Hapla DMLabel l0, l1; 7651609dae6eSVaclav Hapla const char *name; 7652609dae6eSVaclav Hapla char *msgInner; 7653609dae6eSVaclav Hapla 7654609dae6eSVaclav Hapla /* Ignore label order */ 76559566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm0, i, &l0)); 76569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)l0, &name)); 76579566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm1, name, &l1)); 7658609dae6eSVaclav Hapla if (!l1) { 765963a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(msg, sizeof(msg), "Label \"%s\" (#%" PetscInt_FMT " in dm0) not found in dm1", name, i)); 76605efe38ccSVaclav Hapla eq = PETSC_FALSE; 76615efe38ccSVaclav Hapla break; 7662609dae6eSVaclav Hapla } 76639566063dSJacob Faibussowitsch PetscCall(DMLabelCompare(comm, l0, l1, &eq, &msgInner)); 76649566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(msg, msgInner, sizeof(msg))); 76659566063dSJacob Faibussowitsch PetscCall(PetscFree(msgInner)); 76665efe38ccSVaclav Hapla if (!eq) break; 7667609dae6eSVaclav Hapla } 7668462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 7669609dae6eSVaclav Hapla finish: 76705efe38ccSVaclav Hapla /* If message output arg not set, print to stderr */ 7671609dae6eSVaclav Hapla if (message) { 7672609dae6eSVaclav Hapla *message = NULL; 767348a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscStrallocpy(msg, message)); 76745efe38ccSVaclav Hapla } else { 767548a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscSynchronizedFPrintf(comm, PETSC_STDERR, "[%d] %s\n", rank, msg)); 76769566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, PETSC_STDERR)); 76775efe38ccSVaclav Hapla } 76785efe38ccSVaclav Hapla /* If same output arg not ser and labels are not equal, throw error */ 76795efe38ccSVaclav Hapla if (equal) *equal = eq; 76807a8be351SBarry Smith else PetscCheck(eq, comm, PETSC_ERR_ARG_INCOMP, "DMLabels are not the same in dm0 and dm1"); 76813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7682609dae6eSVaclav Hapla } 7683609dae6eSVaclav Hapla 7684d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue_Fast(DM dm, DMLabel *label, const char name[], PetscInt point, PetscInt value) 7685d71ae5a4SJacob Faibussowitsch { 7686461a15a0SLisandro Dalcin PetscFunctionBegin; 76874f572ea9SToby Isaac PetscAssertPointer(label, 2); 7688461a15a0SLisandro Dalcin if (!*label) { 76899566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 76909566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, label)); 7691461a15a0SLisandro Dalcin } 76929566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(*label, point, value)); 76933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7694461a15a0SLisandro Dalcin } 7695461a15a0SLisandro Dalcin 76960fdc7489SMatthew Knepley /* 76970fdc7489SMatthew Knepley Many mesh programs, such as Triangle and TetGen, allow only a single label for each mesh point. Therefore, we would 76980fdc7489SMatthew Knepley like to encode all label IDs using a single, universal label. We can do this by assigning an integer to every 76990fdc7489SMatthew Knepley (label, id) pair in the DM. 77000fdc7489SMatthew Knepley 77010fdc7489SMatthew Knepley However, a mesh point can have multiple labels, so we must separate all these values. We will assign a bit range to 77020fdc7489SMatthew Knepley each label. 77030fdc7489SMatthew Knepley */ 7704d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreate(DM dm, DMUniversalLabel *universal) 7705d71ae5a4SJacob Faibussowitsch { 77060fdc7489SMatthew Knepley DMUniversalLabel ul; 77070fdc7489SMatthew Knepley PetscBool *active; 77080fdc7489SMatthew Knepley PetscInt pStart, pEnd, p, Nl, l, m; 77090fdc7489SMatthew Knepley 77100fdc7489SMatthew Knepley PetscFunctionBegin; 77119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &ul)); 77129566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "universal", &ul->label)); 77139566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 77149566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Nl, &active)); 77150fdc7489SMatthew Knepley ul->Nl = 0; 77160fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 77170fdc7489SMatthew Knepley PetscBool isdepth, iscelltype; 77180fdc7489SMatthew Knepley const char *name; 77190fdc7489SMatthew Knepley 77209566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 77219566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "depth", 6, &isdepth)); 77229566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "celltype", 9, &iscelltype)); 77230fdc7489SMatthew Knepley active[l] = !(isdepth || iscelltype) ? PETSC_TRUE : PETSC_FALSE; 77240fdc7489SMatthew Knepley if (active[l]) ++ul->Nl; 77250fdc7489SMatthew Knepley } 77269566063dSJacob Faibussowitsch PetscCall(PetscCalloc5(ul->Nl, &ul->names, ul->Nl, &ul->indices, ul->Nl + 1, &ul->offsets, ul->Nl + 1, &ul->bits, ul->Nl, &ul->masks)); 77270fdc7489SMatthew Knepley ul->Nv = 0; 77280fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 77290fdc7489SMatthew Knepley DMLabel label; 77300fdc7489SMatthew Knepley PetscInt nv; 77310fdc7489SMatthew Knepley const char *name; 77320fdc7489SMatthew Knepley 77330fdc7489SMatthew Knepley if (!active[l]) continue; 77349566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 77359566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 77369566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 77379566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(name, &ul->names[m])); 77380fdc7489SMatthew Knepley ul->indices[m] = l; 77390fdc7489SMatthew Knepley ul->Nv += nv; 77400fdc7489SMatthew Knepley ul->offsets[m + 1] = nv; 77410fdc7489SMatthew Knepley ul->bits[m + 1] = PetscCeilReal(PetscLog2Real(nv + 1)); 77420fdc7489SMatthew Knepley ++m; 77430fdc7489SMatthew Knepley } 77440fdc7489SMatthew Knepley for (l = 1; l <= ul->Nl; ++l) { 77450fdc7489SMatthew Knepley ul->offsets[l] = ul->offsets[l - 1] + ul->offsets[l]; 77460fdc7489SMatthew Knepley ul->bits[l] = ul->bits[l - 1] + ul->bits[l]; 77470fdc7489SMatthew Knepley } 77480fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 77490fdc7489SMatthew Knepley PetscInt b; 77500fdc7489SMatthew Knepley 77510fdc7489SMatthew Knepley ul->masks[l] = 0; 77520fdc7489SMatthew Knepley for (b = ul->bits[l]; b < ul->bits[l + 1]; ++b) ul->masks[l] |= 1 << b; 77530fdc7489SMatthew Knepley } 77549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ul->Nv, &ul->values)); 77550fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 77560fdc7489SMatthew Knepley DMLabel label; 77570fdc7489SMatthew Knepley IS valueIS; 77580fdc7489SMatthew Knepley const PetscInt *varr; 77590fdc7489SMatthew Knepley PetscInt nv, v; 77600fdc7489SMatthew Knepley 77610fdc7489SMatthew Knepley if (!active[l]) continue; 77629566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 77639566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 77649566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 77659566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &varr)); 7766ad540459SPierre Jolivet for (v = 0; v < nv; ++v) ul->values[ul->offsets[m] + v] = varr[v]; 77679566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &varr)); 77689566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 77699566063dSJacob Faibussowitsch PetscCall(PetscSortInt(nv, &ul->values[ul->offsets[m]])); 77700fdc7489SMatthew Knepley ++m; 77710fdc7489SMatthew Knepley } 77729566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 77730fdc7489SMatthew Knepley for (p = pStart; p < pEnd; ++p) { 77740fdc7489SMatthew Knepley PetscInt uval = 0; 77750fdc7489SMatthew Knepley PetscBool marked = PETSC_FALSE; 77760fdc7489SMatthew Knepley 77770fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 77780fdc7489SMatthew Knepley DMLabel label; 77790649b39aSStefano Zampini PetscInt val, defval, loc, nv; 77800fdc7489SMatthew Knepley 77810fdc7489SMatthew Knepley if (!active[l]) continue; 77829566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 77839566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, p, &val)); 77849566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defval)); 77859371c9d4SSatish Balay if (val == defval) { 77869371c9d4SSatish Balay ++m; 77879371c9d4SSatish Balay continue; 77889371c9d4SSatish Balay } 77890649b39aSStefano Zampini nv = ul->offsets[m + 1] - ul->offsets[m]; 77900fdc7489SMatthew Knepley marked = PETSC_TRUE; 77919566063dSJacob Faibussowitsch PetscCall(PetscFindInt(val, nv, &ul->values[ul->offsets[m]], &loc)); 779263a3b9bcSJacob Faibussowitsch PetscCheck(loc >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Label value %" PetscInt_FMT " not found in compression array", val); 77930fdc7489SMatthew Knepley uval += (loc + 1) << ul->bits[m]; 77940fdc7489SMatthew Knepley ++m; 77950fdc7489SMatthew Knepley } 77969566063dSJacob Faibussowitsch if (marked) PetscCall(DMLabelSetValue(ul->label, p, uval)); 77970fdc7489SMatthew Knepley } 77989566063dSJacob Faibussowitsch PetscCall(PetscFree(active)); 77990fdc7489SMatthew Knepley *universal = ul; 78003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78010fdc7489SMatthew Knepley } 78020fdc7489SMatthew Knepley 7803d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelDestroy(DMUniversalLabel *universal) 7804d71ae5a4SJacob Faibussowitsch { 78050fdc7489SMatthew Knepley PetscInt l; 78060fdc7489SMatthew Knepley 78070fdc7489SMatthew Knepley PetscFunctionBegin; 78089566063dSJacob Faibussowitsch for (l = 0; l < (*universal)->Nl; ++l) PetscCall(PetscFree((*universal)->names[l])); 78099566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&(*universal)->label)); 78109566063dSJacob Faibussowitsch PetscCall(PetscFree5((*universal)->names, (*universal)->indices, (*universal)->offsets, (*universal)->bits, (*universal)->masks)); 78119566063dSJacob Faibussowitsch PetscCall(PetscFree((*universal)->values)); 78129566063dSJacob Faibussowitsch PetscCall(PetscFree(*universal)); 78130fdc7489SMatthew Knepley *universal = NULL; 78143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78150fdc7489SMatthew Knepley } 78160fdc7489SMatthew Knepley 7817d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelGetLabel(DMUniversalLabel ul, DMLabel *ulabel) 7818d71ae5a4SJacob Faibussowitsch { 78190fdc7489SMatthew Knepley PetscFunctionBegin; 78204f572ea9SToby Isaac PetscAssertPointer(ulabel, 2); 78210fdc7489SMatthew Knepley *ulabel = ul->label; 78223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78230fdc7489SMatthew Knepley } 78240fdc7489SMatthew Knepley 7825d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreateLabels(DMUniversalLabel ul, PetscBool preserveOrder, DM dm) 7826d71ae5a4SJacob Faibussowitsch { 78270fdc7489SMatthew Knepley PetscInt Nl = ul->Nl, l; 78280fdc7489SMatthew Knepley 78290fdc7489SMatthew Knepley PetscFunctionBegin; 7830064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dm, DM_CLASSID, 3); 78310fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 78329566063dSJacob Faibussowitsch if (preserveOrder) PetscCall(DMCreateLabelAtIndex(dm, ul->indices[l], ul->names[l])); 78339566063dSJacob Faibussowitsch else PetscCall(DMCreateLabel(dm, ul->names[l])); 78340fdc7489SMatthew Knepley } 78350fdc7489SMatthew Knepley if (preserveOrder) { 78360fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 78370fdc7489SMatthew Knepley const char *name; 78380fdc7489SMatthew Knepley PetscBool match; 78390fdc7489SMatthew Knepley 78409566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, ul->indices[l], &name)); 78419566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, ul->names[l], &match)); 784263a3b9bcSJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Label %" PetscInt_FMT " name %s does not match new name %s", l, name, ul->names[l]); 78430fdc7489SMatthew Knepley } 78440fdc7489SMatthew Knepley } 78453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78460fdc7489SMatthew Knepley } 78470fdc7489SMatthew Knepley 7848d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelSetLabelValue(DMUniversalLabel ul, DM dm, PetscBool useIndex, PetscInt p, PetscInt value) 7849d71ae5a4SJacob Faibussowitsch { 78500fdc7489SMatthew Knepley PetscInt l; 78510fdc7489SMatthew Knepley 78520fdc7489SMatthew Knepley PetscFunctionBegin; 78530fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 78540fdc7489SMatthew Knepley DMLabel label; 78550fdc7489SMatthew Knepley PetscInt lval = (value & ul->masks[l]) >> ul->bits[l]; 78560fdc7489SMatthew Knepley 78570fdc7489SMatthew Knepley if (lval) { 78589566063dSJacob Faibussowitsch if (useIndex) PetscCall(DMGetLabelByNum(dm, ul->indices[l], &label)); 78599566063dSJacob Faibussowitsch else PetscCall(DMGetLabel(dm, ul->names[l], &label)); 78609566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, ul->values[ul->offsets[l] + lval - 1])); 78610fdc7489SMatthew Knepley } 78620fdc7489SMatthew Knepley } 78633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78640fdc7489SMatthew Knepley } 7865a8fb8f29SToby Isaac 7866a8fb8f29SToby Isaac /*@ 7867bb7acecfSBarry Smith DMGetCoarseDM - Get the coarse `DM`from which this `DM` was obtained by refinement 7868bb7acecfSBarry Smith 786920f4b53cSBarry Smith Not Collective 7870a8fb8f29SToby Isaac 7871a8fb8f29SToby Isaac Input Parameter: 7872bb7acecfSBarry Smith . dm - The `DM` object 7873a8fb8f29SToby Isaac 7874a8fb8f29SToby Isaac Output Parameter: 7875bb7acecfSBarry Smith . cdm - The coarse `DM` 7876a8fb8f29SToby Isaac 7877a8fb8f29SToby Isaac Level: intermediate 7878a8fb8f29SToby Isaac 78791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetCoarseDM()`, `DMCoarsen()` 7880a8fb8f29SToby Isaac @*/ 7881d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarseDM(DM dm, DM *cdm) 7882d71ae5a4SJacob Faibussowitsch { 7883a8fb8f29SToby Isaac PetscFunctionBegin; 7884a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 78854f572ea9SToby Isaac PetscAssertPointer(cdm, 2); 7886a8fb8f29SToby Isaac *cdm = dm->coarseMesh; 78873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7888a8fb8f29SToby Isaac } 7889a8fb8f29SToby Isaac 7890a8fb8f29SToby Isaac /*@ 7891bb7acecfSBarry Smith DMSetCoarseDM - Set the coarse `DM` from which this `DM` was obtained by refinement 7892a8fb8f29SToby Isaac 7893a8fb8f29SToby Isaac Input Parameters: 7894bb7acecfSBarry Smith + dm - The `DM` object 7895bb7acecfSBarry Smith - cdm - The coarse `DM` 7896a8fb8f29SToby Isaac 7897a8fb8f29SToby Isaac Level: intermediate 7898a8fb8f29SToby Isaac 7899bb7acecfSBarry Smith Note: 7900bb7acecfSBarry Smith Normally this is set automatically by `DMRefine()` 7901bb7acecfSBarry Smith 79021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCoarseDM()`, `DMCoarsen()`, `DMSetRefine()`, `DMSetFineDM()` 7903a8fb8f29SToby Isaac @*/ 7904d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarseDM(DM dm, DM cdm) 7905d71ae5a4SJacob Faibussowitsch { 7906a8fb8f29SToby Isaac PetscFunctionBegin; 7907a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7908a8fb8f29SToby Isaac if (cdm) PetscValidHeaderSpecific(cdm, DM_CLASSID, 2); 790989d734beSBarry Smith if (dm == cdm) cdm = NULL; 79109566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)cdm)); 79119566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->coarseMesh)); 7912a8fb8f29SToby Isaac dm->coarseMesh = cdm; 79133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7914a8fb8f29SToby Isaac } 7915a8fb8f29SToby Isaac 791688bdff64SToby Isaac /*@ 7917bb7acecfSBarry Smith DMGetFineDM - Get the fine mesh from which this `DM` was obtained by coarsening 791888bdff64SToby Isaac 791988bdff64SToby Isaac Input Parameter: 7920bb7acecfSBarry Smith . dm - The `DM` object 792188bdff64SToby Isaac 792288bdff64SToby Isaac Output Parameter: 7923bb7acecfSBarry Smith . fdm - The fine `DM` 792488bdff64SToby Isaac 792588bdff64SToby Isaac Level: intermediate 792688bdff64SToby Isaac 79271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetFineDM()`, `DMCoarsen()`, `DMRefine()` 792888bdff64SToby Isaac @*/ 7929d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFineDM(DM dm, DM *fdm) 7930d71ae5a4SJacob Faibussowitsch { 793188bdff64SToby Isaac PetscFunctionBegin; 793288bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 79334f572ea9SToby Isaac PetscAssertPointer(fdm, 2); 793488bdff64SToby Isaac *fdm = dm->fineMesh; 79353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 793688bdff64SToby Isaac } 793788bdff64SToby Isaac 793888bdff64SToby Isaac /*@ 7939bb7acecfSBarry Smith DMSetFineDM - Set the fine mesh from which this was obtained by coarsening 794088bdff64SToby Isaac 794188bdff64SToby Isaac Input Parameters: 7942bb7acecfSBarry Smith + dm - The `DM` object 7943bb7acecfSBarry Smith - fdm - The fine `DM` 794488bdff64SToby Isaac 7945bb7acecfSBarry Smith Level: developer 794688bdff64SToby Isaac 7947bb7acecfSBarry Smith Note: 7948bb7acecfSBarry Smith Normally this is set automatically by `DMCoarsen()` 7949bb7acecfSBarry Smith 79501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFineDM()`, `DMCoarsen()`, `DMRefine()` 795188bdff64SToby Isaac @*/ 7952d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFineDM(DM dm, DM fdm) 7953d71ae5a4SJacob Faibussowitsch { 795488bdff64SToby Isaac PetscFunctionBegin; 795588bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 795688bdff64SToby Isaac if (fdm) PetscValidHeaderSpecific(fdm, DM_CLASSID, 2); 795789d734beSBarry Smith if (dm == fdm) fdm = NULL; 79589566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fdm)); 79599566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->fineMesh)); 796088bdff64SToby Isaac dm->fineMesh = fdm; 79613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 796288bdff64SToby Isaac } 796388bdff64SToby Isaac 7964a6ba4734SToby Isaac /*@C 7965bb7acecfSBarry Smith DMAddBoundary - Add a boundary condition to a model represented by a `DM` 7966a6ba4734SToby Isaac 796720f4b53cSBarry Smith Collective 7968783e2ec8SMatthew G. Knepley 7969a6ba4734SToby Isaac Input Parameters: 7970bb7acecfSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 7971bb7acecfSBarry Smith . type - The type of condition, e.g. `DM_BC_ESSENTIAL_ANALYTIC`, `DM_BC_ESSENTIAL_FIELD` (Dirichlet), or `DM_BC_NATURAL` (Neumann) 7972a6ba4734SToby Isaac . name - The BC name 797345480ffeSMatthew G. Knepley . label - The label defining constrained points 7974bb7acecfSBarry Smith . Nv - The number of `DMLabel` values for constrained points 797545480ffeSMatthew G. Knepley . values - An array of values for constrained points 7976a6ba4734SToby Isaac . field - The field to constrain 7977258f4e96SStefano Zampini . Nc - The number of constrained field components (0 will constrain all components) 7978a6ba4734SToby Isaac . comps - An array of constrained component numbers 7979a6ba4734SToby Isaac . bcFunc - A pointwise function giving boundary values 798056cf3b9cSMatthew G. Knepley . bcFunc_t - A pointwise function giving the time deriative of the boundary values, or NULL 7981a6ba4734SToby Isaac - ctx - An optional user context for bcFunc 7982a6ba4734SToby Isaac 798345480ffeSMatthew G. Knepley Output Parameter: 798445480ffeSMatthew G. Knepley . bd - (Optional) Boundary number 798545480ffeSMatthew G. Knepley 7986a6ba4734SToby Isaac Options Database Keys: 7987a6ba4734SToby Isaac + -bc_<boundary name> <num> - Overrides the boundary ids 7988a6ba4734SToby Isaac - -bc_<boundary name>_comp <num> - Overrides the boundary components 7989a6ba4734SToby Isaac 799020f4b53cSBarry Smith Level: intermediate 799120f4b53cSBarry Smith 7992bb7acecfSBarry Smith Notes: 7993fa74d514SMatthew G. Knepley If the `DM` is of type `DMPLEX` and the field is of type `PetscFE`, then this function completes the label using `DMPlexLabelComplete()`. 7994fa74d514SMatthew G. Knepley 7995aeebefc2SPierre Jolivet Both bcFunc and bcFunc_t will depend on the boundary condition type. If the type if `DM_BC_ESSENTIAL`, then the calling sequence is\: 799673ff1848SBarry Smith .vb 799773ff1848SBarry Smith void bcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[]) 799873ff1848SBarry Smith .ve 799956cf3b9cSMatthew G. Knepley 8000a4e35b19SJacob Faibussowitsch If the type is `DM_BC_ESSENTIAL_FIELD` or other _FIELD value, then the calling sequence is\: 800156cf3b9cSMatthew G. Knepley 800220f4b53cSBarry Smith .vb 800320f4b53cSBarry Smith void bcFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux, 800420f4b53cSBarry Smith const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 800520f4b53cSBarry Smith const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 800620f4b53cSBarry Smith PetscReal time, const PetscReal x[], PetscScalar bcval[]) 800720f4b53cSBarry Smith .ve 800856cf3b9cSMatthew G. Knepley + dim - the spatial dimension 800956cf3b9cSMatthew G. Knepley . Nf - the number of fields 801056cf3b9cSMatthew G. Knepley . uOff - the offset into u[] and u_t[] for each field 801156cf3b9cSMatthew G. Knepley . uOff_x - the offset into u_x[] for each field 801256cf3b9cSMatthew G. Knepley . u - each field evaluated at the current point 801356cf3b9cSMatthew G. Knepley . u_t - the time derivative of each field evaluated at the current point 801456cf3b9cSMatthew G. Knepley . u_x - the gradient of each field evaluated at the current point 801556cf3b9cSMatthew G. Knepley . aOff - the offset into a[] and a_t[] for each auxiliary field 801656cf3b9cSMatthew G. Knepley . aOff_x - the offset into a_x[] for each auxiliary field 801756cf3b9cSMatthew G. Knepley . a - each auxiliary field evaluated at the current point 801856cf3b9cSMatthew G. Knepley . a_t - the time derivative of each auxiliary field evaluated at the current point 801956cf3b9cSMatthew G. Knepley . a_x - the gradient of auxiliary each field evaluated at the current point 802056cf3b9cSMatthew G. Knepley . t - current time 802156cf3b9cSMatthew G. Knepley . x - coordinates of the current point 802256cf3b9cSMatthew G. Knepley . numConstants - number of constant parameters 802356cf3b9cSMatthew G. Knepley . constants - constant parameters 802456cf3b9cSMatthew G. Knepley - bcval - output values at the current point 802556cf3b9cSMatthew G. Knepley 80261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DSGetBoundary()`, `PetscDSAddBoundary()` 8027a6ba4734SToby Isaac @*/ 8028d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddBoundary(DM dm, DMBoundaryConditionType type, const char name[], DMLabel label, PetscInt Nv, const PetscInt values[], PetscInt field, PetscInt Nc, const PetscInt comps[], void (*bcFunc)(void), void (*bcFunc_t)(void), void *ctx, PetscInt *bd) 8029d71ae5a4SJacob Faibussowitsch { 8030e5e52638SMatthew G. Knepley PetscDS ds; 8031a6ba4734SToby Isaac 8032a6ba4734SToby Isaac PetscFunctionBegin; 8033a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8034783e2ec8SMatthew G. Knepley PetscValidLogicalCollectiveEnum(dm, type, 2); 803545480ffeSMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 4); 803645480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nv, 5); 803745480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, field, 7); 803845480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 8); 803901a5d20dSJed Brown PetscCheck(!dm->localSection, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot add boundary to DM after creating local section"); 80409566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 8041799db056SMatthew G. Knepley /* Complete label */ 8042799db056SMatthew G. Knepley if (label) { 8043799db056SMatthew G. Knepley PetscObject obj; 8044799db056SMatthew G. Knepley PetscClassId id; 8045799db056SMatthew G. Knepley 8046799db056SMatthew G. Knepley PetscCall(DMGetField(dm, field, NULL, &obj)); 8047799db056SMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 8048799db056SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 8049799db056SMatthew G. Knepley DM plex; 8050799db056SMatthew G. Knepley 8051799db056SMatthew G. Knepley PetscCall(DMConvert(dm, DMPLEX, &plex)); 8052799db056SMatthew G. Knepley if (plex) PetscCall(DMPlexLabelComplete(plex, label)); 8053799db056SMatthew G. Knepley PetscCall(DMDestroy(&plex)); 8054799db056SMatthew G. Knepley } 8055799db056SMatthew G. Knepley } 80569566063dSJacob Faibussowitsch PetscCall(PetscDSAddBoundary(ds, type, name, label, Nv, values, field, Nc, comps, bcFunc, bcFunc_t, ctx, bd)); 80573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8058a6ba4734SToby Isaac } 8059a6ba4734SToby Isaac 806045480ffeSMatthew G. Knepley /* TODO Remove this since now the structures are the same */ 8061d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPopulateBoundary(DM dm) 8062d71ae5a4SJacob Faibussowitsch { 8063e5e52638SMatthew G. Knepley PetscDS ds; 8064dff059c6SToby Isaac DMBoundary *lastnext; 8065e6f8dbb6SToby Isaac DSBoundary dsbound; 8066e6f8dbb6SToby Isaac 8067e6f8dbb6SToby Isaac PetscFunctionBegin; 80689566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 8069e5e52638SMatthew G. Knepley dsbound = ds->boundary; 807047a1f5adSToby Isaac if (dm->boundary) { 807147a1f5adSToby Isaac DMBoundary next = dm->boundary; 807247a1f5adSToby Isaac 807347a1f5adSToby Isaac /* quick check to see if the PetscDS has changed */ 80743ba16761SJacob Faibussowitsch if (next->dsboundary == dsbound) PetscFunctionReturn(PETSC_SUCCESS); 807547a1f5adSToby Isaac /* the PetscDS has changed: tear down and rebuild */ 807647a1f5adSToby Isaac while (next) { 807747a1f5adSToby Isaac DMBoundary b = next; 807847a1f5adSToby Isaac 807947a1f5adSToby Isaac next = b->next; 80809566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 8081a6ba4734SToby Isaac } 808247a1f5adSToby Isaac dm->boundary = NULL; 8083a6ba4734SToby Isaac } 808447a1f5adSToby Isaac 8085f4f49eeaSPierre Jolivet lastnext = &dm->boundary; 8086e6f8dbb6SToby Isaac while (dsbound) { 8087e6f8dbb6SToby Isaac DMBoundary dmbound; 8088e6f8dbb6SToby Isaac 80899566063dSJacob Faibussowitsch PetscCall(PetscNew(&dmbound)); 8090e6f8dbb6SToby Isaac dmbound->dsboundary = dsbound; 809145480ffeSMatthew G. Knepley dmbound->label = dsbound->label; 809247a1f5adSToby Isaac /* push on the back instead of the front so that it is in the same order as in the PetscDS */ 8093dff059c6SToby Isaac *lastnext = dmbound; 8094f4f49eeaSPierre Jolivet lastnext = &dmbound->next; 8095dff059c6SToby Isaac dsbound = dsbound->next; 8096a6ba4734SToby Isaac } 80973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8098a6ba4734SToby Isaac } 8099a6ba4734SToby Isaac 8100bb7acecfSBarry Smith /* TODO: missing manual page */ 8101d71ae5a4SJacob Faibussowitsch PetscErrorCode DMIsBoundaryPoint(DM dm, PetscInt point, PetscBool *isBd) 8102d71ae5a4SJacob Faibussowitsch { 8103b95f2879SToby Isaac DMBoundary b; 8104a6ba4734SToby Isaac 8105a6ba4734SToby Isaac PetscFunctionBegin; 8106a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 81074f572ea9SToby Isaac PetscAssertPointer(isBd, 3); 8108a6ba4734SToby Isaac *isBd = PETSC_FALSE; 81099566063dSJacob Faibussowitsch PetscCall(DMPopulateBoundary(dm)); 8110b95f2879SToby Isaac b = dm->boundary; 811157508eceSPierre Jolivet while (b && !*isBd) { 8112e6f8dbb6SToby Isaac DMLabel label = b->label; 8113e6f8dbb6SToby Isaac DSBoundary dsb = b->dsboundary; 8114a6ba4734SToby Isaac PetscInt i; 8115a6ba4734SToby Isaac 811645480ffeSMatthew G. Knepley if (label) { 811757508eceSPierre Jolivet for (i = 0; i < dsb->Nv && !*isBd; ++i) PetscCall(DMLabelStratumHasPoint(label, dsb->values[i], point, isBd)); 8118a6ba4734SToby Isaac } 8119a6ba4734SToby Isaac b = b->next; 8120a6ba4734SToby Isaac } 81213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8122a6ba4734SToby Isaac } 81234d6f44ffSToby Isaac 81244d6f44ffSToby Isaac /*@C 8125bb7acecfSBarry Smith DMProjectFunction - This projects the given function into the function space provided by a `DM`, putting the coefficients in a global vector. 8126a6e0b375SMatthew G. Knepley 812720f4b53cSBarry Smith Collective 81284d6f44ffSToby Isaac 81294d6f44ffSToby Isaac Input Parameters: 8130bb7acecfSBarry Smith + dm - The `DM` 81310709b2feSToby Isaac . time - The time 81324d6f44ffSToby Isaac . funcs - The coordinate functions to evaluate, one per field 81334d6f44ffSToby Isaac . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 81344d6f44ffSToby Isaac - mode - The insertion mode for values 81354d6f44ffSToby Isaac 81364d6f44ffSToby Isaac Output Parameter: 81374d6f44ffSToby Isaac . X - vector 81384d6f44ffSToby Isaac 813920f4b53cSBarry Smith Calling sequence of `funcs`: 81404d6f44ffSToby Isaac + dim - The spatial dimension 81418ec8862eSJed Brown . time - The time at which to sample 81424d6f44ffSToby Isaac . x - The coordinates 814377b739a6SMatthew Knepley . Nc - The number of components 81444d6f44ffSToby Isaac . u - The output field values 81454d6f44ffSToby Isaac - ctx - optional user-defined function context 81464d6f44ffSToby Isaac 81474d6f44ffSToby Isaac Level: developer 81484d6f44ffSToby Isaac 8149bb7acecfSBarry Smith Developer Notes: 8150bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8151bb7acecfSBarry Smith 8152bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8153bb7acecfSBarry Smith 81541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 81554d6f44ffSToby Isaac @*/ 8156a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunction(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X) 8157d71ae5a4SJacob Faibussowitsch { 81584d6f44ffSToby Isaac Vec localX; 81594d6f44ffSToby Isaac 81604d6f44ffSToby Isaac PetscFunctionBegin; 81614d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8162708be2fdSJed Brown PetscCall(PetscLogEventBegin(DM_ProjectFunction, dm, X, 0, 0)); 81639566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 8164f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 81659566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, mode, localX)); 81669566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 81679566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 81689566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 8169708be2fdSJed Brown PetscCall(PetscLogEventEnd(DM_ProjectFunction, dm, X, 0, 0)); 81703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 81714d6f44ffSToby Isaac } 81724d6f44ffSToby Isaac 8173a6e0b375SMatthew G. Knepley /*@C 8174bb7acecfSBarry Smith DMProjectFunctionLocal - This projects the given function into the function space provided by a `DM`, putting the coefficients in a local vector. 8175a6e0b375SMatthew G. Knepley 817620f4b53cSBarry Smith Not Collective 8177a6e0b375SMatthew G. Knepley 8178a6e0b375SMatthew G. Knepley Input Parameters: 8179bb7acecfSBarry Smith + dm - The `DM` 8180a6e0b375SMatthew G. Knepley . time - The time 8181a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8182a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 8183a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8184a6e0b375SMatthew G. Knepley 8185a6e0b375SMatthew G. Knepley Output Parameter: 8186a6e0b375SMatthew G. Knepley . localX - vector 8187a6e0b375SMatthew G. Knepley 818820f4b53cSBarry Smith Calling sequence of `funcs`: 8189a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8190a4e35b19SJacob Faibussowitsch . time - The current timestep 8191a6e0b375SMatthew G. Knepley . x - The coordinates 819277b739a6SMatthew Knepley . Nc - The number of components 8193a6e0b375SMatthew G. Knepley . u - The output field values 8194a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8195a6e0b375SMatthew G. Knepley 8196a6e0b375SMatthew G. Knepley Level: developer 8197a6e0b375SMatthew G. Knepley 8198bb7acecfSBarry Smith Developer Notes: 8199bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8200bb7acecfSBarry Smith 8201bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8202bb7acecfSBarry Smith 82031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 8204a6e0b375SMatthew G. Knepley @*/ 8205a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX) 8206d71ae5a4SJacob Faibussowitsch { 82074d6f44ffSToby Isaac PetscFunctionBegin; 82084d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8209064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 8210fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfunctionlocal, time, funcs, ctxs, mode, localX); 82113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82124d6f44ffSToby Isaac } 82134d6f44ffSToby Isaac 8214a6e0b375SMatthew G. Knepley /*@C 8215bb7acecfSBarry Smith DMProjectFunctionLabel - This projects the given function into the function space provided by the `DM`, putting the coefficients in a global vector, setting values only for points in the given label. 8216a6e0b375SMatthew G. Knepley 821720f4b53cSBarry Smith Collective 8218a6e0b375SMatthew G. Knepley 8219a6e0b375SMatthew G. Knepley Input Parameters: 8220bb7acecfSBarry Smith + dm - The `DM` 8221a6e0b375SMatthew G. Knepley . time - The time 8222a4e35b19SJacob Faibussowitsch . numIds - The number of ids 8223a4e35b19SJacob Faibussowitsch . ids - The ids 8224a4e35b19SJacob Faibussowitsch . Nc - The number of components 8225a4e35b19SJacob Faibussowitsch . comps - The components 8226bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8227a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8228bb7acecfSBarry Smith . ctxs - Optional array of contexts to pass to each coordinate function. ctxs may be null. 8229a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8230a6e0b375SMatthew G. Knepley 8231a6e0b375SMatthew G. Knepley Output Parameter: 8232a6e0b375SMatthew G. Knepley . X - vector 8233a6e0b375SMatthew G. Knepley 823420f4b53cSBarry Smith Calling sequence of `funcs`: 8235a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8236a4e35b19SJacob Faibussowitsch . time - The current timestep 8237a6e0b375SMatthew G. Knepley . x - The coordinates 823877b739a6SMatthew Knepley . Nc - The number of components 8239a6e0b375SMatthew G. Knepley . u - The output field values 8240a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8241a6e0b375SMatthew G. Knepley 8242a6e0b375SMatthew G. Knepley Level: developer 8243a6e0b375SMatthew G. Knepley 8244bb7acecfSBarry Smith Developer Notes: 8245bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8246bb7acecfSBarry Smith 8247bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8248bb7acecfSBarry Smith 82491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`, `DMComputeL2Diff()` 8250a6e0b375SMatthew G. Knepley @*/ 8251a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X) 8252d71ae5a4SJacob Faibussowitsch { 82532c53366bSMatthew G. Knepley Vec localX; 82542c53366bSMatthew G. Knepley 82552c53366bSMatthew G. Knepley PetscFunctionBegin; 82562c53366bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 82579566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 8258f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 82599566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX)); 82609566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 82619566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 82629566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 82633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82642c53366bSMatthew G. Knepley } 82652c53366bSMatthew G. Knepley 8266a6e0b375SMatthew G. Knepley /*@C 8267bb7acecfSBarry Smith DMProjectFunctionLabelLocal - This projects the given function into the function space provided by the `DM`, putting the coefficients in a local vector, setting values only for points in the given label. 8268a6e0b375SMatthew G. Knepley 826920f4b53cSBarry Smith Not Collective 8270a6e0b375SMatthew G. Knepley 8271a6e0b375SMatthew G. Knepley Input Parameters: 8272bb7acecfSBarry Smith + dm - The `DM` 8273a6e0b375SMatthew G. Knepley . time - The time 8274bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8275a4e35b19SJacob Faibussowitsch . numIds - The number of ids 8276a4e35b19SJacob Faibussowitsch . ids - The ids 8277a4e35b19SJacob Faibussowitsch . Nc - The number of components 8278a4e35b19SJacob Faibussowitsch . comps - The components 8279a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8280a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 8281a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8282a6e0b375SMatthew G. Knepley 8283a6e0b375SMatthew G. Knepley Output Parameter: 8284a6e0b375SMatthew G. Knepley . localX - vector 8285a6e0b375SMatthew G. Knepley 828620f4b53cSBarry Smith Calling sequence of `funcs`: 8287a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8288a4e35b19SJacob Faibussowitsch . time - The current time 8289a6e0b375SMatthew G. Knepley . x - The coordinates 829077b739a6SMatthew Knepley . Nc - The number of components 8291a6e0b375SMatthew G. Knepley . u - The output field values 8292a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8293a6e0b375SMatthew G. Knepley 8294a6e0b375SMatthew G. Knepley Level: developer 8295a6e0b375SMatthew G. Knepley 8296bb7acecfSBarry Smith Developer Notes: 8297bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8298bb7acecfSBarry Smith 8299bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8300bb7acecfSBarry Smith 83011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 8302a6e0b375SMatthew G. Knepley @*/ 8303a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX) 8304d71ae5a4SJacob Faibussowitsch { 83054d6f44ffSToby Isaac PetscFunctionBegin; 83064d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8307064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8308fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfunctionlabellocal, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX); 83093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 83104d6f44ffSToby Isaac } 83112716604bSToby Isaac 8312a6e0b375SMatthew G. Knepley /*@C 8313bb7acecfSBarry Smith DMProjectFieldLocal - This projects the given function of the input fields into the function space provided by the `DM`, putting the coefficients in a local vector. 8314a6e0b375SMatthew G. Knepley 831520f4b53cSBarry Smith Not Collective 8316a6e0b375SMatthew G. Knepley 8317a6e0b375SMatthew G. Knepley Input Parameters: 8318bb7acecfSBarry Smith + dm - The `DM` 8319a6e0b375SMatthew G. Knepley . time - The time 832020f4b53cSBarry Smith . localU - The input field vector; may be `NULL` if projection is defined purely by coordinates 8321a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8322a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8323a6e0b375SMatthew G. Knepley 8324a6e0b375SMatthew G. Knepley Output Parameter: 8325a6e0b375SMatthew G. Knepley . localX - The output vector 8326a6e0b375SMatthew G. Knepley 832720f4b53cSBarry Smith Calling sequence of `funcs`: 8328a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8329a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8330a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8331a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8332a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8333a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8334a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8335a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8336a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8337a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8338a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8339a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8340a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8341a6e0b375SMatthew G. Knepley . t - The current time 8342a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8343a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8344a6e0b375SMatthew G. Knepley . constants - The value of each constant 8345a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8346a6e0b375SMatthew G. Knepley 834773ff1848SBarry Smith Level: intermediate 834873ff1848SBarry Smith 8349bb7acecfSBarry Smith Note: 8350bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8351bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8352bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8353a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8354a6e0b375SMatthew G. Knepley 8355bb7acecfSBarry Smith Developer Notes: 8356bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8357bb7acecfSBarry Smith 8358bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8359bb7acecfSBarry Smith 8360a4e35b19SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, 8361a4e35b19SJacob Faibussowitsch `DMProjectFunction()`, `DMComputeL2Diff()` 8362a6e0b375SMatthew G. Knepley @*/ 8363a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLocal(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8364d71ae5a4SJacob Faibussowitsch { 83658c6c5593SMatthew G. Knepley PetscFunctionBegin; 83668c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8367eb8f539aSJed Brown if (localU) PetscValidHeaderSpecific(localU, VEC_CLASSID, 3); 83688c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 8369fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfieldlocal, time, localU, funcs, mode, localX); 83703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 83718c6c5593SMatthew G. Knepley } 83728c6c5593SMatthew G. Knepley 8373a6e0b375SMatthew G. Knepley /*@C 8374a6e0b375SMatthew G. Knepley DMProjectFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain specified by the label. 8375a6e0b375SMatthew G. Knepley 837620f4b53cSBarry Smith Not Collective 8377a6e0b375SMatthew G. Knepley 8378a6e0b375SMatthew G. Knepley Input Parameters: 8379bb7acecfSBarry Smith + dm - The `DM` 8380a6e0b375SMatthew G. Knepley . time - The time 8381bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8382a6e0b375SMatthew G. Knepley . numIds - The number of label ids to use 8383a6e0b375SMatthew G. Knepley . ids - The label ids to use for marking 8384bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 838520f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8386a6e0b375SMatthew G. Knepley . localU - The input field vector 8387a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8388a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8389a6e0b375SMatthew G. Knepley 8390a6e0b375SMatthew G. Knepley Output Parameter: 8391a6e0b375SMatthew G. Knepley . localX - The output vector 8392a6e0b375SMatthew G. Knepley 839320f4b53cSBarry Smith Calling sequence of `funcs`: 8394a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8395a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8396a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8397a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8398a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8399a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8400a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8401a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8402a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8403a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8404a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8405a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8406a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8407a6e0b375SMatthew G. Knepley . t - The current time 8408a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8409a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8410a6e0b375SMatthew G. Knepley . constants - The value of each constant 8411a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8412a6e0b375SMatthew G. Knepley 841373ff1848SBarry Smith Level: intermediate 841473ff1848SBarry Smith 8415bb7acecfSBarry Smith Note: 8416bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8417bb7acecfSBarry Smith The input `DM`, attached to localU, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8418bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8419a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8420a6e0b375SMatthew G. Knepley 8421bb7acecfSBarry Smith Developer Notes: 8422bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8423bb7acecfSBarry Smith 8424bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8425bb7acecfSBarry Smith 84261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabel()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8427a6e0b375SMatthew G. Knepley @*/ 8428a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8429d71ae5a4SJacob Faibussowitsch { 84308c6c5593SMatthew G. Knepley PetscFunctionBegin; 84318c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8432064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8433064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8434fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX); 84353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 84368c6c5593SMatthew G. Knepley } 84378c6c5593SMatthew G. Knepley 84382716604bSToby Isaac /*@C 8439d29d7c6eSMatthew G. Knepley DMProjectFieldLabel - This projects the given function of the input fields into the function space provided, putting the coefficients in a global vector, calculating only over the portion of the domain specified by the label. 8440d29d7c6eSMatthew G. Knepley 844120f4b53cSBarry Smith Not Collective 8442d29d7c6eSMatthew G. Knepley 8443d29d7c6eSMatthew G. Knepley Input Parameters: 8444bb7acecfSBarry Smith + dm - The `DM` 8445d29d7c6eSMatthew G. Knepley . time - The time 8446bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8447d29d7c6eSMatthew G. Knepley . numIds - The number of label ids to use 8448d29d7c6eSMatthew G. Knepley . ids - The label ids to use for marking 8449bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 845020f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8451d29d7c6eSMatthew G. Knepley . U - The input field vector 8452d29d7c6eSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8453d29d7c6eSMatthew G. Knepley - mode - The insertion mode for values 8454d29d7c6eSMatthew G. Knepley 8455d29d7c6eSMatthew G. Knepley Output Parameter: 8456d29d7c6eSMatthew G. Knepley . X - The output vector 8457d29d7c6eSMatthew G. Knepley 845820f4b53cSBarry Smith Calling sequence of `funcs`: 8459d29d7c6eSMatthew G. Knepley + dim - The spatial dimension 8460d29d7c6eSMatthew G. Knepley . Nf - The number of input fields 8461d29d7c6eSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8462d29d7c6eSMatthew G. Knepley . uOff - The offset of each field in u[] 8463d29d7c6eSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8464d29d7c6eSMatthew G. Knepley . u - The field values at this point in space 8465d29d7c6eSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8466d29d7c6eSMatthew G. Knepley . u_x - The field derivatives at this point in space 8467d29d7c6eSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8468d29d7c6eSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8469d29d7c6eSMatthew G. Knepley . a - The auxiliary field values at this point in space 8470d29d7c6eSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8471d29d7c6eSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8472d29d7c6eSMatthew G. Knepley . t - The current time 8473d29d7c6eSMatthew G. Knepley . x - The coordinates of this point 8474d29d7c6eSMatthew G. Knepley . numConstants - The number of constants 8475d29d7c6eSMatthew G. Knepley . constants - The value of each constant 8476d29d7c6eSMatthew G. Knepley - f - The value of the function at this point in space 8477d29d7c6eSMatthew G. Knepley 847873ff1848SBarry Smith Level: intermediate 847973ff1848SBarry Smith 8480bb7acecfSBarry Smith Note: 8481bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8482bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8483bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8484d29d7c6eSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8485d29d7c6eSMatthew G. Knepley 8486bb7acecfSBarry Smith Developer Notes: 8487bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8488bb7acecfSBarry Smith 8489bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8490bb7acecfSBarry Smith 84911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8492d29d7c6eSMatthew G. Knepley @*/ 8493a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec U, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec X) 8494d71ae5a4SJacob Faibussowitsch { 8495d29d7c6eSMatthew G. Knepley DM dmIn; 8496d29d7c6eSMatthew G. Knepley Vec localU, localX; 8497d29d7c6eSMatthew G. Knepley 8498d29d7c6eSMatthew G. Knepley PetscFunctionBegin; 8499d29d7c6eSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8500d29d7c6eSMatthew G. Knepley PetscCall(VecGetDM(U, &dmIn)); 8501d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dmIn, &localU)); 8502d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &localX)); 8503f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 850472fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalBegin(dmIn, U, mode, localU)); 850572fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalEnd(dmIn, U, mode, localU)); 8506d29d7c6eSMatthew G. Knepley PetscCall(DMProjectFieldLabelLocal(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX)); 8507d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 8508d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 8509d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &localX)); 8510d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dmIn, &localU)); 85113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8512d29d7c6eSMatthew G. Knepley } 8513d29d7c6eSMatthew G. Knepley 8514d29d7c6eSMatthew G. Knepley /*@C 8515ece3a9fcSMatthew G. Knepley DMProjectBdFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain boundary specified by the label. 8516ece3a9fcSMatthew G. Knepley 851720f4b53cSBarry Smith Not Collective 8518ece3a9fcSMatthew G. Knepley 8519ece3a9fcSMatthew G. Knepley Input Parameters: 8520bb7acecfSBarry Smith + dm - The `DM` 8521ece3a9fcSMatthew G. Knepley . time - The time 8522bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain boundary to output 8523ece3a9fcSMatthew G. Knepley . numIds - The number of label ids to use 8524ece3a9fcSMatthew G. Knepley . ids - The label ids to use for marking 8525bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 852620f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8527ece3a9fcSMatthew G. Knepley . localU - The input field vector 8528ece3a9fcSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8529ece3a9fcSMatthew G. Knepley - mode - The insertion mode for values 8530ece3a9fcSMatthew G. Knepley 8531ece3a9fcSMatthew G. Knepley Output Parameter: 8532ece3a9fcSMatthew G. Knepley . localX - The output vector 8533ece3a9fcSMatthew G. Knepley 853420f4b53cSBarry Smith Calling sequence of `funcs`: 8535ece3a9fcSMatthew G. Knepley + dim - The spatial dimension 8536ece3a9fcSMatthew G. Knepley . Nf - The number of input fields 8537ece3a9fcSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8538ece3a9fcSMatthew G. Knepley . uOff - The offset of each field in u[] 8539ece3a9fcSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8540ece3a9fcSMatthew G. Knepley . u - The field values at this point in space 8541ece3a9fcSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8542ece3a9fcSMatthew G. Knepley . u_x - The field derivatives at this point in space 8543ece3a9fcSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8544ece3a9fcSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8545ece3a9fcSMatthew G. Knepley . a - The auxiliary field values at this point in space 8546ece3a9fcSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8547ece3a9fcSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8548ece3a9fcSMatthew G. Knepley . t - The current time 8549ece3a9fcSMatthew G. Knepley . x - The coordinates of this point 8550ece3a9fcSMatthew G. Knepley . n - The face normal 8551ece3a9fcSMatthew G. Knepley . numConstants - The number of constants 8552ece3a9fcSMatthew G. Knepley . constants - The value of each constant 8553ece3a9fcSMatthew G. Knepley - f - The value of the function at this point in space 8554ece3a9fcSMatthew G. Knepley 855573ff1848SBarry Smith Level: intermediate 855673ff1848SBarry Smith 8557ece3a9fcSMatthew G. Knepley Note: 8558bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8559bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8560bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8561ece3a9fcSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8562ece3a9fcSMatthew G. Knepley 8563bb7acecfSBarry Smith Developer Notes: 8564bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8565bb7acecfSBarry Smith 8566bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8567bb7acecfSBarry Smith 85681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8569ece3a9fcSMatthew G. Knepley @*/ 8570a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectBdFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8571d71ae5a4SJacob Faibussowitsch { 8572ece3a9fcSMatthew G. Knepley PetscFunctionBegin; 8573ece3a9fcSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8574064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8575064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8576fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectbdfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX); 85773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8578ece3a9fcSMatthew G. Knepley } 8579ece3a9fcSMatthew G. Knepley 8580ece3a9fcSMatthew G. Knepley /*@C 85812716604bSToby Isaac DMComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 85822716604bSToby Isaac 858320f4b53cSBarry Smith Collective 8584bb7acecfSBarry Smith 85852716604bSToby Isaac Input Parameters: 8586bb7acecfSBarry Smith + dm - The `DM` 85870709b2feSToby Isaac . time - The time 85882716604bSToby Isaac . funcs - The functions to evaluate for each field component 85892716604bSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8590574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 85912716604bSToby Isaac 85922716604bSToby Isaac Output Parameter: 85932716604bSToby Isaac . diff - The diff ||u - u_h||_2 85942716604bSToby Isaac 85952716604bSToby Isaac Level: developer 85962716604bSToby Isaac 8597bb7acecfSBarry Smith Developer Notes: 8598bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8599bb7acecfSBarry Smith 8600bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8601bb7acecfSBarry Smith 86021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 86032716604bSToby Isaac @*/ 8604d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 8605d71ae5a4SJacob Faibussowitsch { 86062716604bSToby Isaac PetscFunctionBegin; 86072716604bSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8608b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8609fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2diff, time, funcs, ctxs, X, diff); 86103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 86112716604bSToby Isaac } 8612b698f381SToby Isaac 8613b698f381SToby Isaac /*@C 8614b698f381SToby Isaac DMComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h. 8615b698f381SToby Isaac 861620f4b53cSBarry Smith Collective 8617d083f849SBarry Smith 8618b698f381SToby Isaac Input Parameters: 8619bb7acecfSBarry Smith + dm - The `DM` 8620a4e35b19SJacob Faibussowitsch . time - The time 8621b698f381SToby Isaac . funcs - The gradient functions to evaluate for each field component 8622b698f381SToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8623574a98acSMatthew G. Knepley . X - The coefficient vector u_h, a global vector 8624b698f381SToby Isaac - n - The vector to project along 8625b698f381SToby Isaac 8626b698f381SToby Isaac Output Parameter: 8627b698f381SToby Isaac . diff - The diff ||(grad u - grad u_h) . n||_2 8628b698f381SToby Isaac 8629b698f381SToby Isaac Level: developer 8630b698f381SToby Isaac 8631bb7acecfSBarry Smith Developer Notes: 8632bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8633bb7acecfSBarry Smith 8634bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8635bb7acecfSBarry Smith 86361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMComputeL2FieldDiff()` 8637b698f381SToby Isaac @*/ 8638d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 8639d71ae5a4SJacob Faibussowitsch { 8640b698f381SToby Isaac PetscFunctionBegin; 8641b698f381SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8642b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8643fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2gradientdiff, time, funcs, ctxs, X, n, diff); 86443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8645b698f381SToby Isaac } 8646b698f381SToby Isaac 86472a16baeaSToby Isaac /*@C 86482a16baeaSToby Isaac DMComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components. 86492a16baeaSToby Isaac 865020f4b53cSBarry Smith Collective 8651d083f849SBarry Smith 86522a16baeaSToby Isaac Input Parameters: 8653bb7acecfSBarry Smith + dm - The `DM` 86542a16baeaSToby Isaac . time - The time 86552a16baeaSToby Isaac . funcs - The functions to evaluate for each field component 86562a16baeaSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8657574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 86582a16baeaSToby Isaac 86592a16baeaSToby Isaac Output Parameter: 86602a16baeaSToby Isaac . diff - The array of differences, ||u^f - u^f_h||_2 86612a16baeaSToby Isaac 86622a16baeaSToby Isaac Level: developer 86632a16baeaSToby Isaac 8664bb7acecfSBarry Smith Developer Notes: 8665bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8666bb7acecfSBarry Smith 8667bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8668bb7acecfSBarry Smith 866942747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2GradientDiff()` 86702a16baeaSToby Isaac @*/ 8671d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[]) 8672d71ae5a4SJacob Faibussowitsch { 86732a16baeaSToby Isaac PetscFunctionBegin; 86742a16baeaSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 86752a16baeaSToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8676fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2fielddiff, time, funcs, ctxs, X, diff); 86773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 86782a16baeaSToby Isaac } 86792a16baeaSToby Isaac 8680df0b854cSToby Isaac /*@C 8681bb7acecfSBarry Smith DMGetNeighbors - Gets an array containing the MPI ranks of all the processes neighbors 8682502a2867SDave May 8683502a2867SDave May Not Collective 8684502a2867SDave May 8685502a2867SDave May Input Parameter: 8686bb7acecfSBarry Smith . dm - The `DM` 8687502a2867SDave May 86880a19bb7dSprj- Output Parameters: 86890a19bb7dSprj- + nranks - the number of neighbours 86900a19bb7dSprj- - ranks - the neighbors ranks 8691502a2867SDave May 86929bdbcad8SBarry Smith Level: beginner 86939bdbcad8SBarry Smith 8694bb7acecfSBarry Smith Note: 8695bb7acecfSBarry Smith Do not free the array, it is freed when the `DM` is destroyed. 8696502a2867SDave May 86971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDAGetNeighbors()`, `PetscSFGetRootRanks()` 8698502a2867SDave May @*/ 8699d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNeighbors(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[]) 8700d71ae5a4SJacob Faibussowitsch { 8701502a2867SDave May PetscFunctionBegin; 8702502a2867SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8703fa1e479aSStefano Zampini PetscUseTypeMethod(dm, getneighbors, nranks, ranks); 87043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8705502a2867SDave May } 8706502a2867SDave May 8707531c7667SBarry Smith #include <petsc/private/matimpl.h> /* Needed because of coloring->ctype below */ 8708531c7667SBarry Smith 8709531c7667SBarry Smith /* 8710531c7667SBarry Smith Converts the input vector to a ghosted vector and then calls the standard coloring code. 87112b6f951bSStefano Zampini This must be a different function because it requires DM which is not defined in the Mat library 8712531c7667SBarry Smith */ 871366976f2fSJacob Faibussowitsch static PetscErrorCode MatFDColoringApply_AIJDM(Mat J, MatFDColoring coloring, Vec x1, void *sctx) 8714d71ae5a4SJacob Faibussowitsch { 8715531c7667SBarry Smith PetscFunctionBegin; 8716531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8717531c7667SBarry Smith Vec x1local; 8718531c7667SBarry Smith DM dm; 87199566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 87207a8be351SBarry Smith PetscCheck(dm, PetscObjectComm((PetscObject)J), PETSC_ERR_ARG_INCOMP, "IS_COLORING_LOCAL requires a DM"); 87219566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &x1local)); 87229566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, x1, INSERT_VALUES, x1local)); 87239566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, x1, INSERT_VALUES, x1local)); 8724531c7667SBarry Smith x1 = x1local; 8725531c7667SBarry Smith } 87269566063dSJacob Faibussowitsch PetscCall(MatFDColoringApply_AIJ(J, coloring, x1, sctx)); 8727531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8728531c7667SBarry Smith DM dm; 87299566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 87309566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &x1)); 8731531c7667SBarry Smith } 87323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8733531c7667SBarry Smith } 8734531c7667SBarry Smith 8735531c7667SBarry Smith /*@ 8736bb7acecfSBarry Smith MatFDColoringUseDM - allows a `MatFDColoring` object to use the `DM` associated with the matrix to compute a `IS_COLORING_LOCAL` coloring 8737531c7667SBarry Smith 8738a4e35b19SJacob Faibussowitsch Input Parameters: 8739a4e35b19SJacob Faibussowitsch + coloring - The matrix to get the `DM` from 8740a4e35b19SJacob Faibussowitsch - fdcoloring - the `MatFDColoring` object 8741531c7667SBarry Smith 87429bdbcad8SBarry Smith Level: advanced 87439bdbcad8SBarry Smith 874473ff1848SBarry Smith Developer Note: 874573ff1848SBarry Smith This routine exists because the PETSc `Mat` library does not know about the `DM` objects 8746531c7667SBarry Smith 87471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatFDColoring`, `MatFDColoringCreate()`, `ISColoringType` 8748531c7667SBarry Smith @*/ 8749d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringUseDM(Mat coloring, MatFDColoring fdcoloring) 8750d71ae5a4SJacob Faibussowitsch { 8751531c7667SBarry Smith PetscFunctionBegin; 8752531c7667SBarry Smith coloring->ops->fdcoloringapply = MatFDColoringApply_AIJDM; 87533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8754531c7667SBarry Smith } 87558320bc6fSPatrick Sanan 87568320bc6fSPatrick Sanan /*@ 8757bb7acecfSBarry Smith DMGetCompatibility - determine if two `DM`s are compatible 87588320bc6fSPatrick Sanan 87598320bc6fSPatrick Sanan Collective 87608320bc6fSPatrick Sanan 87618320bc6fSPatrick Sanan Input Parameters: 8762bb7acecfSBarry Smith + dm1 - the first `DM` 8763bb7acecfSBarry Smith - dm2 - the second `DM` 87648320bc6fSPatrick Sanan 87658320bc6fSPatrick Sanan Output Parameters: 8766bb7acecfSBarry Smith + compatible - whether or not the two `DM`s are compatible 8767bb7acecfSBarry Smith - set - whether or not the compatible value was actually determined and set 87688320bc6fSPatrick Sanan 876920f4b53cSBarry Smith Level: advanced 877020f4b53cSBarry Smith 87718320bc6fSPatrick Sanan Notes: 8772bb7acecfSBarry Smith Two `DM`s are deemed compatible if they represent the same parallel decomposition 87733d862458SPatrick Sanan of the same topology. This implies that the section (field data) on one 87748320bc6fSPatrick Sanan "makes sense" with respect to the topology and parallel decomposition of the other. 8775bb7acecfSBarry Smith Loosely speaking, compatible `DM`s represent the same domain and parallel 87763d862458SPatrick Sanan decomposition, but hold different data. 87778320bc6fSPatrick Sanan 87788320bc6fSPatrick Sanan Typically, one would confirm compatibility if intending to simultaneously iterate 8779bb7acecfSBarry Smith over a pair of vectors obtained from different `DM`s. 87808320bc6fSPatrick Sanan 8781bb7acecfSBarry Smith For example, two `DMDA` objects are compatible if they have the same local 87828320bc6fSPatrick Sanan and global sizes and the same stencil width. They can have different numbers 87838320bc6fSPatrick Sanan of degrees of freedom per node. Thus, one could use the node numbering from 8784bb7acecfSBarry Smith either `DM` in bounds for a loop over vectors derived from either `DM`. 87858320bc6fSPatrick Sanan 8786bb7acecfSBarry Smith Consider the operation of summing data living on a 2-dof `DMDA` to data living 8787bb7acecfSBarry Smith on a 1-dof `DMDA`, which should be compatible, as in the following snippet. 87888320bc6fSPatrick Sanan .vb 87898320bc6fSPatrick Sanan ... 87909566063dSJacob Faibussowitsch PetscCall(DMGetCompatibility(da1,da2,&compatible,&set)); 87918320bc6fSPatrick Sanan if (set && compatible) { 87929566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da1,vec1,&arr1)); 87939566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da2,vec2,&arr2)); 87949566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da1,&x,&y,NULL,&m,&n,NULL)); 87958320bc6fSPatrick Sanan for (j=y; j<y+n; ++j) { 87968320bc6fSPatrick Sanan for (i=x; i<x+m, ++i) { 87978320bc6fSPatrick Sanan arr1[j][i][0] = arr2[j][i][0] + arr2[j][i][1]; 87988320bc6fSPatrick Sanan } 87998320bc6fSPatrick Sanan } 88009566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da1,vec1,&arr1)); 88019566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da2,vec2,&arr2)); 88028320bc6fSPatrick Sanan } else { 88038320bc6fSPatrick Sanan SETERRQ(PetscObjectComm((PetscObject)da1,PETSC_ERR_ARG_INCOMP,"DMDA objects incompatible"); 88048320bc6fSPatrick Sanan } 88058320bc6fSPatrick Sanan ... 88068320bc6fSPatrick Sanan .ve 88078320bc6fSPatrick Sanan 8808bb7acecfSBarry Smith Checking compatibility might be expensive for a given implementation of `DM`, 88098320bc6fSPatrick Sanan or might be impossible to unambiguously confirm or deny. For this reason, 88108320bc6fSPatrick Sanan this function may decline to determine compatibility, and hence users should 88118320bc6fSPatrick Sanan always check the "set" output parameter. 88128320bc6fSPatrick Sanan 8813bb7acecfSBarry Smith A `DM` is always compatible with itself. 88148320bc6fSPatrick Sanan 8815bb7acecfSBarry Smith In the current implementation, `DM`s which live on "unequal" communicators 88168320bc6fSPatrick Sanan (MPI_UNEQUAL in the terminology of MPI_Comm_compare()) are always deemed 88178320bc6fSPatrick Sanan incompatible. 88188320bc6fSPatrick Sanan 88198320bc6fSPatrick Sanan This function is labeled "Collective," as information about all subdomains 8820bb7acecfSBarry Smith is required on each rank. However, in `DM` implementations which store all this 88218320bc6fSPatrick Sanan information locally, this function may be merely "Logically Collective". 88228320bc6fSPatrick Sanan 882373ff1848SBarry Smith Developer Note: 8824bb7acecfSBarry Smith Compatibility is assumed to be a symmetric concept; `DM` A is compatible with `DM` B 88253d862458SPatrick Sanan iff B is compatible with A. Thus, this function checks the implementations 8826a5bc1bf3SBarry Smith of both dm and dmc (if they are of different types), attempting to determine 8827bb7acecfSBarry Smith compatibility. It is left to `DM` implementers to ensure that symmetry is 88288320bc6fSPatrick Sanan preserved. The simplest way to do this is, when implementing type-specific 88293d862458SPatrick Sanan logic for this function, is to check for existing logic in the implementation 8830bb7acecfSBarry Smith of other `DM` types and let *set = PETSC_FALSE if found. 88318320bc6fSPatrick Sanan 88321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreateCompatibleDMDA()`, `DMStagCreateCompatibleDMStag()` 88338320bc6fSPatrick Sanan @*/ 8834d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCompatibility(DM dm1, DM dm2, PetscBool *compatible, PetscBool *set) 8835d71ae5a4SJacob Faibussowitsch { 88368320bc6fSPatrick Sanan PetscMPIInt compareResult; 88378320bc6fSPatrick Sanan DMType type, type2; 88388320bc6fSPatrick Sanan PetscBool sameType; 88398320bc6fSPatrick Sanan 88408320bc6fSPatrick Sanan PetscFunctionBegin; 8841a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dm1, DM_CLASSID, 1); 88428320bc6fSPatrick Sanan PetscValidHeaderSpecific(dm2, DM_CLASSID, 2); 88438320bc6fSPatrick Sanan 88448320bc6fSPatrick Sanan /* Declare a DM compatible with itself */ 8845a5bc1bf3SBarry Smith if (dm1 == dm2) { 88468320bc6fSPatrick Sanan *set = PETSC_TRUE; 88478320bc6fSPatrick Sanan *compatible = PETSC_TRUE; 88483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 88498320bc6fSPatrick Sanan } 88508320bc6fSPatrick Sanan 88518320bc6fSPatrick Sanan /* Declare a DM incompatible with a DM that lives on an "unequal" 88528320bc6fSPatrick Sanan communicator. Note that this does not preclude compatibility with 88538320bc6fSPatrick Sanan DMs living on "congruent" or "similar" communicators, but this must be 88548320bc6fSPatrick Sanan determined by the implementation-specific logic */ 88559566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)dm1), PetscObjectComm((PetscObject)dm2), &compareResult)); 88568320bc6fSPatrick Sanan if (compareResult == MPI_UNEQUAL) { 88578320bc6fSPatrick Sanan *set = PETSC_TRUE; 88588320bc6fSPatrick Sanan *compatible = PETSC_FALSE; 88593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 88608320bc6fSPatrick Sanan } 88618320bc6fSPatrick Sanan 88628320bc6fSPatrick Sanan /* Pass to the implementation-specific routine, if one exists. */ 8863a5bc1bf3SBarry Smith if (dm1->ops->getcompatibility) { 8864dbbe0bcdSBarry Smith PetscUseTypeMethod(dm1, getcompatibility, dm2, compatible, set); 88653ba16761SJacob Faibussowitsch if (*set) PetscFunctionReturn(PETSC_SUCCESS); 88668320bc6fSPatrick Sanan } 88678320bc6fSPatrick Sanan 8868a5bc1bf3SBarry Smith /* If dm1 and dm2 are of different types, then attempt to check compatibility 88698320bc6fSPatrick Sanan with an implementation of this function from dm2 */ 88709566063dSJacob Faibussowitsch PetscCall(DMGetType(dm1, &type)); 88719566063dSJacob Faibussowitsch PetscCall(DMGetType(dm2, &type2)); 88729566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(type, type2, &sameType)); 88738320bc6fSPatrick Sanan if (!sameType && dm2->ops->getcompatibility) { 8874dbbe0bcdSBarry Smith PetscUseTypeMethod(dm2, getcompatibility, dm1, compatible, set); /* Note argument order */ 88758320bc6fSPatrick Sanan } else { 88768320bc6fSPatrick Sanan *set = PETSC_FALSE; 88778320bc6fSPatrick Sanan } 88783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 88798320bc6fSPatrick Sanan } 8880c0f0dcc3SMatthew G. Knepley 8881c0f0dcc3SMatthew G. Knepley /*@C 8882bb7acecfSBarry Smith DMMonitorSet - Sets an additional monitor function that is to be used after a solve to monitor discretization performance. 8883c0f0dcc3SMatthew G. Knepley 888420f4b53cSBarry Smith Logically Collective 8885c0f0dcc3SMatthew G. Knepley 8886c0f0dcc3SMatthew G. Knepley Input Parameters: 888760225df5SJacob Faibussowitsch + dm - the `DM` 8888c0f0dcc3SMatthew G. Knepley . f - the monitor function 888920f4b53cSBarry Smith . mctx - [optional] user-defined context for private data for the monitor routine (use `NULL` if no context is desired) 889049abdd8aSBarry Smith - monitordestroy - [optional] routine that frees monitor context (may be `NULL`), see `PetscCtxDestroyFn` for the calling sequence 8891c0f0dcc3SMatthew G. Knepley 889220f4b53cSBarry Smith Options Database Key: 889360225df5SJacob Faibussowitsch . -dm_monitor_cancel - cancels all monitors that have been hardwired into a code by calls to `DMMonitorSet()`, but 8894c0f0dcc3SMatthew G. Knepley does not cancel those set via the options database. 8895c0f0dcc3SMatthew G. Knepley 88969bdbcad8SBarry Smith Level: intermediate 88979bdbcad8SBarry Smith 8898bb7acecfSBarry Smith Note: 8899c0f0dcc3SMatthew G. Knepley Several different monitoring routines may be set by calling 8900bb7acecfSBarry Smith `DMMonitorSet()` multiple times or with `DMMonitorSetFromOptions()`; all will be called in the 8901c0f0dcc3SMatthew G. Knepley order in which they were set. 8902c0f0dcc3SMatthew G. Knepley 890373ff1848SBarry Smith Fortran Note: 8904bb7acecfSBarry Smith Only a single monitor function can be set for each `DM` object 8905bb7acecfSBarry Smith 890673ff1848SBarry Smith Developer Note: 8907bb7acecfSBarry Smith This API has a generic name but seems specific to a very particular aspect of the use of `DM` 8908c0f0dcc3SMatthew G. Knepley 890949abdd8aSBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorCancel()`, `DMMonitorSetFromOptions()`, `DMMonitor()`, `PetscCtxDestroyFn` 8910c0f0dcc3SMatthew G. Knepley @*/ 891149abdd8aSBarry Smith PetscErrorCode DMMonitorSet(DM dm, PetscErrorCode (*f)(DM, void *), void *mctx, PetscCtxDestroyFn *monitordestroy) 8912d71ae5a4SJacob Faibussowitsch { 8913c0f0dcc3SMatthew G. Knepley PetscInt m; 8914c0f0dcc3SMatthew G. Knepley 8915c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8916c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8917c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 8918c0f0dcc3SMatthew G. Knepley PetscBool identical; 8919c0f0dcc3SMatthew G. Knepley 89209566063dSJacob Faibussowitsch PetscCall(PetscMonitorCompare((PetscErrorCode (*)(void))f, mctx, monitordestroy, (PetscErrorCode (*)(void))dm->monitor[m], dm->monitorcontext[m], dm->monitordestroy[m], &identical)); 89213ba16761SJacob Faibussowitsch if (identical) PetscFunctionReturn(PETSC_SUCCESS); 8922c0f0dcc3SMatthew G. Knepley } 89237a8be351SBarry Smith PetscCheck(dm->numbermonitors < MAXDMMONITORS, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many monitors set"); 8924c0f0dcc3SMatthew G. Knepley dm->monitor[dm->numbermonitors] = f; 8925c0f0dcc3SMatthew G. Knepley dm->monitordestroy[dm->numbermonitors] = monitordestroy; 8926835f2295SStefano Zampini dm->monitorcontext[dm->numbermonitors++] = mctx; 89273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8928c0f0dcc3SMatthew G. Knepley } 8929c0f0dcc3SMatthew G. Knepley 8930c0f0dcc3SMatthew G. Knepley /*@ 8931bb7acecfSBarry Smith DMMonitorCancel - Clears all the monitor functions for a `DM` object. 8932c0f0dcc3SMatthew G. Knepley 893320f4b53cSBarry Smith Logically Collective 8934c0f0dcc3SMatthew G. Knepley 8935c0f0dcc3SMatthew G. Knepley Input Parameter: 8936c0f0dcc3SMatthew G. Knepley . dm - the DM 8937c0f0dcc3SMatthew G. Knepley 8938c0f0dcc3SMatthew G. Knepley Options Database Key: 8939c0f0dcc3SMatthew G. Knepley . -dm_monitor_cancel - cancels all monitors that have been hardwired 8940bb7acecfSBarry Smith into a code by calls to `DMonitorSet()`, but does not cancel those 8941c0f0dcc3SMatthew G. Knepley set via the options database 8942c0f0dcc3SMatthew G. Knepley 89439bdbcad8SBarry Smith Level: intermediate 89449bdbcad8SBarry Smith 8945bb7acecfSBarry Smith Note: 8946bb7acecfSBarry Smith There is no way to clear one specific monitor from a `DM` object. 8947c0f0dcc3SMatthew G. Knepley 89481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`, `DMMonitor()` 8949c0f0dcc3SMatthew G. Knepley @*/ 8950d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorCancel(DM dm) 8951d71ae5a4SJacob Faibussowitsch { 8952c0f0dcc3SMatthew G. Knepley PetscInt m; 8953c0f0dcc3SMatthew G. Knepley 8954c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8955c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8956c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 89579566063dSJacob Faibussowitsch if (dm->monitordestroy[m]) PetscCall((*dm->monitordestroy[m])(&dm->monitorcontext[m])); 8958c0f0dcc3SMatthew G. Knepley } 8959c0f0dcc3SMatthew G. Knepley dm->numbermonitors = 0; 89603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8961c0f0dcc3SMatthew G. Knepley } 8962c0f0dcc3SMatthew G. Knepley 8963c0f0dcc3SMatthew G. Knepley /*@C 8964c0f0dcc3SMatthew G. Knepley DMMonitorSetFromOptions - Sets a monitor function and viewer appropriate for the type indicated by the user 8965c0f0dcc3SMatthew G. Knepley 896620f4b53cSBarry Smith Collective 8967c0f0dcc3SMatthew G. Knepley 8968c0f0dcc3SMatthew G. Knepley Input Parameters: 8969bb7acecfSBarry Smith + dm - `DM` object you wish to monitor 8970c0f0dcc3SMatthew G. Knepley . name - the monitor type one is seeking 8971c0f0dcc3SMatthew G. Knepley . help - message indicating what monitoring is done 8972c0f0dcc3SMatthew G. Knepley . manual - manual page for the monitor 897349abdd8aSBarry Smith . monitor - the monitor function, this must use a `PetscViewerFormat` as its context 8974bb7acecfSBarry Smith - monitorsetup - a function that is called once ONLY if the user selected this monitor that may set additional features of the `DM` or `PetscViewer` objects 8975c0f0dcc3SMatthew G. Knepley 8976c0f0dcc3SMatthew G. Knepley Output Parameter: 8977c0f0dcc3SMatthew G. Knepley . flg - Flag set if the monitor was created 8978c0f0dcc3SMatthew G. Knepley 8979c0f0dcc3SMatthew G. Knepley Level: developer 8980c0f0dcc3SMatthew G. Knepley 8981648c30bcSBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscOptionsCreateViewer()`, `PetscOptionsGetReal()`, `PetscOptionsHasName()`, `PetscOptionsGetString()`, 8982db781477SPatrick Sanan `PetscOptionsGetIntArray()`, `PetscOptionsGetRealArray()`, `PetscOptionsBool()` 898360225df5SJacob Faibussowitsch `PetscOptionsInt()`, `PetscOptionsString()`, `PetscOptionsReal()`, 8984db781477SPatrick Sanan `PetscOptionsName()`, `PetscOptionsBegin()`, `PetscOptionsEnd()`, `PetscOptionsHeadBegin()`, 8985c2e3fba1SPatrick Sanan `PetscOptionsStringArray()`, `PetscOptionsRealArray()`, `PetscOptionsScalar()`, 8986db781477SPatrick Sanan `PetscOptionsBoolGroupBegin()`, `PetscOptionsBoolGroup()`, `PetscOptionsBoolGroupEnd()`, 8987bb7acecfSBarry Smith `PetscOptionsFList()`, `PetscOptionsEList()`, `DMMonitor()`, `DMMonitorSet()` 8988c0f0dcc3SMatthew G. Knepley @*/ 8989d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSetFromOptions(DM dm, const char name[], const char help[], const char manual[], PetscErrorCode (*monitor)(DM, void *), PetscErrorCode (*monitorsetup)(DM, PetscViewerAndFormat *), PetscBool *flg) 8990d71ae5a4SJacob Faibussowitsch { 8991c0f0dcc3SMatthew G. Knepley PetscViewer viewer; 8992c0f0dcc3SMatthew G. Knepley PetscViewerFormat format; 8993c0f0dcc3SMatthew G. Knepley 8994c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8995c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8996648c30bcSBarry Smith PetscCall(PetscOptionsCreateViewer(PetscObjectComm((PetscObject)dm), ((PetscObject)dm)->options, ((PetscObject)dm)->prefix, name, &viewer, &format, flg)); 8997c0f0dcc3SMatthew G. Knepley if (*flg) { 8998c0f0dcc3SMatthew G. Knepley PetscViewerAndFormat *vf; 8999c0f0dcc3SMatthew G. Knepley 90009566063dSJacob Faibussowitsch PetscCall(PetscViewerAndFormatCreate(viewer, format, &vf)); 9001648c30bcSBarry Smith PetscCall(PetscViewerDestroy(&viewer)); 90029566063dSJacob Faibussowitsch if (monitorsetup) PetscCall((*monitorsetup)(dm, vf)); 9003835f2295SStefano Zampini PetscCall(DMMonitorSet(dm, monitor, vf, (PetscCtxDestroyFn *)PetscViewerAndFormatDestroy)); 9004c0f0dcc3SMatthew G. Knepley } 90053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9006c0f0dcc3SMatthew G. Knepley } 9007c0f0dcc3SMatthew G. Knepley 9008c0f0dcc3SMatthew G. Knepley /*@ 9009c0f0dcc3SMatthew G. Knepley DMMonitor - runs the user provided monitor routines, if they exist 9010c0f0dcc3SMatthew G. Knepley 901120f4b53cSBarry Smith Collective 9012c0f0dcc3SMatthew G. Knepley 90132fe279fdSBarry Smith Input Parameter: 9014bb7acecfSBarry Smith . dm - The `DM` 9015c0f0dcc3SMatthew G. Knepley 9016c0f0dcc3SMatthew G. Knepley Level: developer 9017c0f0dcc3SMatthew G. Knepley 901873ff1848SBarry Smith Developer Note: 9019a4e35b19SJacob Faibussowitsch Note should indicate when during the life of the `DM` the monitor is run. It appears to be 9020a4e35b19SJacob Faibussowitsch related to the discretization process seems rather specialized since some `DM` have no 9021a4e35b19SJacob Faibussowitsch concept of discretization. 9022bb7acecfSBarry Smith 90231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()` 9024c0f0dcc3SMatthew G. Knepley @*/ 9025d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitor(DM dm) 9026d71ae5a4SJacob Faibussowitsch { 9027c0f0dcc3SMatthew G. Knepley PetscInt m; 9028c0f0dcc3SMatthew G. Knepley 9029c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 90303ba16761SJacob Faibussowitsch if (!dm) PetscFunctionReturn(PETSC_SUCCESS); 9031c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 903248a46eb9SPierre Jolivet for (m = 0; m < dm->numbermonitors; ++m) PetscCall((*dm->monitor[m])(dm, dm->monitorcontext[m])); 90333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9034c0f0dcc3SMatthew G. Knepley } 90352e4af2aeSMatthew G. Knepley 90362e4af2aeSMatthew G. Knepley /*@ 9037bb7acecfSBarry Smith DMComputeError - Computes the error assuming the user has provided the exact solution functions 90382e4af2aeSMatthew G. Knepley 903920f4b53cSBarry Smith Collective 90402e4af2aeSMatthew G. Knepley 90412e4af2aeSMatthew G. Knepley Input Parameters: 9042bb7acecfSBarry Smith + dm - The `DM` 90436b867d5aSJose E. Roman - sol - The solution vector 90442e4af2aeSMatthew G. Knepley 90456b867d5aSJose E. Roman Input/Output Parameter: 904620f4b53cSBarry Smith . errors - An array of length Nf, the number of fields, or `NULL` for no output; on output 90476b867d5aSJose E. Roman contains the error in each field 90486b867d5aSJose E. Roman 90496b867d5aSJose E. Roman Output Parameter: 905020f4b53cSBarry Smith . errorVec - A vector to hold the cellwise error (may be `NULL`) 905120f4b53cSBarry Smith 905220f4b53cSBarry Smith Level: developer 90532e4af2aeSMatthew G. Knepley 9054bb7acecfSBarry Smith Note: 9055bb7acecfSBarry Smith The exact solutions come from the `PetscDS` object, and the time comes from `DMGetOutputSequenceNumber()`. 90562e4af2aeSMatthew G. Knepley 90571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMGetRegionNumDS()`, `PetscDSGetExactSolution()`, `DMGetOutputSequenceNumber()` 90582e4af2aeSMatthew G. Knepley @*/ 9059d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeError(DM dm, Vec sol, PetscReal errors[], Vec *errorVec) 9060d71ae5a4SJacob Faibussowitsch { 90612e4af2aeSMatthew G. Knepley PetscErrorCode (**exactSol)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *); 90622e4af2aeSMatthew G. Knepley void **ctxs; 90632e4af2aeSMatthew G. Knepley PetscReal time; 90642e4af2aeSMatthew G. Knepley PetscInt Nf, f, Nds, s; 90652e4af2aeSMatthew G. Knepley 90662e4af2aeSMatthew G. Knepley PetscFunctionBegin; 90679566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 90689566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &exactSol, Nf, &ctxs)); 90699566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 90702e4af2aeSMatthew G. Knepley for (s = 0; s < Nds; ++s) { 90712e4af2aeSMatthew G. Knepley PetscDS ds; 90722e4af2aeSMatthew G. Knepley DMLabel label; 90732e4af2aeSMatthew G. Knepley IS fieldIS; 90742e4af2aeSMatthew G. Knepley const PetscInt *fields; 90752e4af2aeSMatthew G. Knepley PetscInt dsNf; 90762e4af2aeSMatthew G. Knepley 907707218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 90789566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 90799566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISGetIndices(fieldIS, &fields)); 90802e4af2aeSMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 90812e4af2aeSMatthew G. Knepley const PetscInt field = fields[f]; 90829566063dSJacob Faibussowitsch PetscCall(PetscDSGetExactSolution(ds, field, &exactSol[field], &ctxs[field])); 90832e4af2aeSMatthew G. Knepley } 90849566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISRestoreIndices(fieldIS, &fields)); 90852e4af2aeSMatthew G. Knepley } 9086ad540459SPierre Jolivet for (f = 0; f < Nf; ++f) PetscCheck(exactSol[f], PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "DS must contain exact solution functions in order to calculate error, missing for field %" PetscInt_FMT, f); 90879566063dSJacob Faibussowitsch PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time)); 90889566063dSJacob Faibussowitsch if (errors) PetscCall(DMComputeL2FieldDiff(dm, time, exactSol, ctxs, sol, errors)); 90892e4af2aeSMatthew G. Knepley if (errorVec) { 90902e4af2aeSMatthew G. Knepley DM edm; 90912e4af2aeSMatthew G. Knepley DMPolytopeType ct; 90922e4af2aeSMatthew G. Knepley PetscBool simplex; 90932e4af2aeSMatthew G. Knepley PetscInt dim, cStart, Nf; 90942e4af2aeSMatthew G. Knepley 90959566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &edm)); 90969566063dSJacob Faibussowitsch PetscCall(DMGetDimension(edm, &dim)); 90979566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 90989566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 90992e4af2aeSMatthew G. Knepley simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE; 91009566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 91012e4af2aeSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 91022e4af2aeSMatthew G. Knepley PetscFE fe, efe; 91032e4af2aeSMatthew G. Knepley PetscQuadrature q; 91042e4af2aeSMatthew G. Knepley const char *name; 91052e4af2aeSMatthew G. Knepley 91069566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe)); 91079566063dSJacob Faibussowitsch PetscCall(PetscFECreateLagrange(PETSC_COMM_SELF, dim, Nf, simplex, 0, PETSC_DETERMINE, &efe)); 91089566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)fe, &name)); 91099566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)efe, name)); 91109566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 91119566063dSJacob Faibussowitsch PetscCall(PetscFESetQuadrature(efe, q)); 91129566063dSJacob Faibussowitsch PetscCall(DMSetField(edm, f, NULL, (PetscObject)efe)); 91139566063dSJacob Faibussowitsch PetscCall(PetscFEDestroy(&efe)); 91142e4af2aeSMatthew G. Knepley } 91159566063dSJacob Faibussowitsch PetscCall(DMCreateDS(edm)); 91162e4af2aeSMatthew G. Knepley 91179566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(edm, errorVec)); 91189566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*errorVec, "Error")); 91199566063dSJacob Faibussowitsch PetscCall(DMPlexComputeL2DiffVec(dm, time, exactSol, ctxs, sol, *errorVec)); 91209566063dSJacob Faibussowitsch PetscCall(DMDestroy(&edm)); 91212e4af2aeSMatthew G. Knepley } 91229566063dSJacob Faibussowitsch PetscCall(PetscFree2(exactSol, ctxs)); 91233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91242e4af2aeSMatthew G. Knepley } 91259a2a23afSMatthew G. Knepley 91269a2a23afSMatthew G. Knepley /*@ 9127bb7acecfSBarry Smith DMGetNumAuxiliaryVec - Get the number of auxiliary vectors associated with this `DM` 91289a2a23afSMatthew G. Knepley 912920f4b53cSBarry Smith Not Collective 91309a2a23afSMatthew G. Knepley 91319a2a23afSMatthew G. Knepley Input Parameter: 9132bb7acecfSBarry Smith . dm - The `DM` 91339a2a23afSMatthew G. Knepley 91349a2a23afSMatthew G. Knepley Output Parameter: 9135a5b23f4aSJose E. Roman . numAux - The number of auxiliary data vectors 91369a2a23afSMatthew G. Knepley 91379a2a23afSMatthew G. Knepley Level: advanced 91389a2a23afSMatthew G. Knepley 9139e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMGetAuxiliaryVec()` 91409a2a23afSMatthew G. Knepley @*/ 9141d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumAuxiliaryVec(DM dm, PetscInt *numAux) 9142d71ae5a4SJacob Faibussowitsch { 91439a2a23afSMatthew G. Knepley PetscFunctionBegin; 91449a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 91459566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetSize(dm->auxData, numAux)); 91463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91479a2a23afSMatthew G. Knepley } 91489a2a23afSMatthew G. Knepley 91499a2a23afSMatthew G. Knepley /*@ 9150ac17215fSMatthew G. Knepley DMGetAuxiliaryVec - Get the auxiliary vector for region specified by the given label and value, and equation part 91519a2a23afSMatthew G. Knepley 915220f4b53cSBarry Smith Not Collective 91539a2a23afSMatthew G. Knepley 91549a2a23afSMatthew G. Knepley Input Parameters: 9155bb7acecfSBarry Smith + dm - The `DM` 9156bb7acecfSBarry Smith . label - The `DMLabel` 9157ac17215fSMatthew G. Knepley . value - The label value indicating the region 9158ac17215fSMatthew G. Knepley - part - The equation part, or 0 if unused 91599a2a23afSMatthew G. Knepley 91609a2a23afSMatthew G. Knepley Output Parameter: 9161bb7acecfSBarry Smith . aux - The `Vec` holding auxiliary field data 91629a2a23afSMatthew G. Knepley 91639bdbcad8SBarry Smith Level: advanced 91649bdbcad8SBarry Smith 9165bb7acecfSBarry Smith Note: 9166bb7acecfSBarry Smith If no auxiliary vector is found for this (label, value), (NULL, 0, 0) is checked as well. 916704c51a94SMatthew G. Knepley 9168e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryLabels()` 91699a2a23afSMatthew G. Knepley @*/ 9170d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec *aux) 9171d71ae5a4SJacob Faibussowitsch { 9172ac17215fSMatthew G. Knepley PetscHashAuxKey key, wild = {NULL, 0, 0}; 917304c51a94SMatthew G. Knepley PetscBool has; 91749a2a23afSMatthew G. Knepley 91759a2a23afSMatthew G. Knepley PetscFunctionBegin; 91769a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 91779a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 91789a2a23afSMatthew G. Knepley key.label = label; 91799a2a23afSMatthew G. Knepley key.value = value; 9180ac17215fSMatthew G. Knepley key.part = part; 91819566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxHas(dm->auxData, key, &has)); 91829566063dSJacob Faibussowitsch if (has) PetscCall(PetscHMapAuxGet(dm->auxData, key, aux)); 91839566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxGet(dm->auxData, wild, aux)); 91843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91859a2a23afSMatthew G. Knepley } 91869a2a23afSMatthew G. Knepley 91879a2a23afSMatthew G. Knepley /*@ 9188bb7acecfSBarry Smith DMSetAuxiliaryVec - Set an auxiliary vector for region specified by the given label and value, and equation part 91899a2a23afSMatthew G. Knepley 919020f4b53cSBarry Smith Not Collective because auxiliary vectors are not parallel 91919a2a23afSMatthew G. Knepley 91929a2a23afSMatthew G. Knepley Input Parameters: 9193bb7acecfSBarry Smith + dm - The `DM` 9194bb7acecfSBarry Smith . label - The `DMLabel` 91959a2a23afSMatthew G. Knepley . value - The label value indicating the region 9196ac17215fSMatthew G. Knepley . part - The equation part, or 0 if unused 9197bb7acecfSBarry Smith - aux - The `Vec` holding auxiliary field data 91989a2a23afSMatthew G. Knepley 91999a2a23afSMatthew G. Knepley Level: advanced 92009a2a23afSMatthew G. Knepley 9201e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMCopyAuxiliaryVec()` 92029a2a23afSMatthew G. Knepley @*/ 9203d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec aux) 9204d71ae5a4SJacob Faibussowitsch { 92059a2a23afSMatthew G. Knepley Vec old; 92069a2a23afSMatthew G. Knepley PetscHashAuxKey key; 92079a2a23afSMatthew G. Knepley 92089a2a23afSMatthew G. Knepley PetscFunctionBegin; 92099a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 92109a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 92119a2a23afSMatthew G. Knepley key.label = label; 92129a2a23afSMatthew G. Knepley key.value = value; 9213ac17215fSMatthew G. Knepley key.part = part; 92149566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGet(dm->auxData, key, &old)); 92159566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)aux)); 92169566063dSJacob Faibussowitsch if (!aux) PetscCall(PetscHMapAuxDel(dm->auxData, key)); 92179566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxSet(dm->auxData, key, aux)); 9218d705d0eaSStefano Zampini PetscCall(VecDestroy(&old)); 92193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92209a2a23afSMatthew G. Knepley } 92219a2a23afSMatthew G. Knepley 9222cc4c1da9SBarry Smith /*@ 9223bb7acecfSBarry Smith DMGetAuxiliaryLabels - Get the labels, values, and parts for all auxiliary vectors in this `DM` 92249a2a23afSMatthew G. Knepley 922520f4b53cSBarry Smith Not Collective 92269a2a23afSMatthew G. Knepley 92279a2a23afSMatthew G. Knepley Input Parameter: 9228bb7acecfSBarry Smith . dm - The `DM` 92299a2a23afSMatthew G. Knepley 92309a2a23afSMatthew G. Knepley Output Parameters: 9231bb7acecfSBarry Smith + labels - The `DMLabel`s for each `Vec` 9232bb7acecfSBarry Smith . values - The label values for each `Vec` 9233bb7acecfSBarry Smith - parts - The equation parts for each `Vec` 92349a2a23afSMatthew G. Knepley 92359bdbcad8SBarry Smith Level: advanced 92369bdbcad8SBarry Smith 9237bb7acecfSBarry Smith Note: 9238bb7acecfSBarry Smith The arrays passed in must be at least as large as `DMGetNumAuxiliaryVec()`. 92399a2a23afSMatthew G. Knepley 9240e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMCopyAuxiliaryVec()` 92419a2a23afSMatthew G. Knepley @*/ 9242d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryLabels(DM dm, DMLabel labels[], PetscInt values[], PetscInt parts[]) 9243d71ae5a4SJacob Faibussowitsch { 92449a2a23afSMatthew G. Knepley PetscHashAuxKey *keys; 92459a2a23afSMatthew G. Knepley PetscInt n, i, off = 0; 92469a2a23afSMatthew G. Knepley 92479a2a23afSMatthew G. Knepley PetscFunctionBegin; 92489a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 92494f572ea9SToby Isaac PetscAssertPointer(labels, 2); 92504f572ea9SToby Isaac PetscAssertPointer(values, 3); 92514f572ea9SToby Isaac PetscAssertPointer(parts, 4); 92529566063dSJacob Faibussowitsch PetscCall(DMGetNumAuxiliaryVec(dm, &n)); 92539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &keys)); 92549566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetKeys(dm->auxData, &off, keys)); 92559371c9d4SSatish Balay for (i = 0; i < n; ++i) { 92569371c9d4SSatish Balay labels[i] = keys[i].label; 92579371c9d4SSatish Balay values[i] = keys[i].value; 92589371c9d4SSatish Balay parts[i] = keys[i].part; 92599371c9d4SSatish Balay } 92609566063dSJacob Faibussowitsch PetscCall(PetscFree(keys)); 92613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92629a2a23afSMatthew G. Knepley } 92639a2a23afSMatthew G. Knepley 92649a2a23afSMatthew G. Knepley /*@ 9265bb7acecfSBarry Smith DMCopyAuxiliaryVec - Copy the auxiliary vector data on a `DM` to a new `DM` 92669a2a23afSMatthew G. Knepley 926720f4b53cSBarry Smith Not Collective 92689a2a23afSMatthew G. Knepley 92699a2a23afSMatthew G. Knepley Input Parameter: 9270bb7acecfSBarry Smith . dm - The `DM` 92719a2a23afSMatthew G. Knepley 92729a2a23afSMatthew G. Knepley Output Parameter: 9273bb7acecfSBarry Smith . dmNew - The new `DM`, now with the same auxiliary data 92749a2a23afSMatthew G. Knepley 92759a2a23afSMatthew G. Knepley Level: advanced 92769a2a23afSMatthew G. Knepley 9277bb7acecfSBarry Smith Note: 9278bb7acecfSBarry Smith This is a shallow copy of the auxiliary vectors 9279bb7acecfSBarry Smith 9280e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 92819a2a23afSMatthew G. Knepley @*/ 9282d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyAuxiliaryVec(DM dm, DM dmNew) 9283d71ae5a4SJacob Faibussowitsch { 92849a2a23afSMatthew G. Knepley PetscFunctionBegin; 92859a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9286d705d0eaSStefano Zampini PetscValidHeaderSpecific(dmNew, DM_CLASSID, 2); 9287d705d0eaSStefano Zampini if (dm == dmNew) PetscFunctionReturn(PETSC_SUCCESS); 9288e4d5475eSStefano Zampini PetscCall(DMClearAuxiliaryVec(dmNew)); 9289e4d5475eSStefano Zampini 9290e4d5475eSStefano Zampini PetscCall(PetscHMapAuxDestroy(&dmNew->auxData)); 92919566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDuplicate(dm->auxData, &dmNew->auxData)); 9292d705d0eaSStefano Zampini { 9293d705d0eaSStefano Zampini Vec *auxData; 9294d705d0eaSStefano Zampini PetscInt n, i, off = 0; 9295d705d0eaSStefano Zampini 9296d705d0eaSStefano Zampini PetscCall(PetscHMapAuxGetSize(dmNew->auxData, &n)); 9297d705d0eaSStefano Zampini PetscCall(PetscMalloc1(n, &auxData)); 9298d705d0eaSStefano Zampini PetscCall(PetscHMapAuxGetVals(dmNew->auxData, &off, auxData)); 9299d705d0eaSStefano Zampini for (i = 0; i < n; ++i) PetscCall(PetscObjectReference((PetscObject)auxData[i])); 9300d705d0eaSStefano Zampini PetscCall(PetscFree(auxData)); 9301e4d5475eSStefano Zampini } 9302e4d5475eSStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 9303e4d5475eSStefano Zampini } 9304e4d5475eSStefano Zampini 9305e4d5475eSStefano Zampini /*@ 9306e4d5475eSStefano Zampini DMClearAuxiliaryVec - Destroys the auxiliary vector information and creates a new empty one 9307e4d5475eSStefano Zampini 9308e4d5475eSStefano Zampini Not Collective 9309e4d5475eSStefano Zampini 9310e4d5475eSStefano Zampini Input Parameter: 9311e4d5475eSStefano Zampini . dm - The `DM` 9312e4d5475eSStefano Zampini 9313e4d5475eSStefano Zampini Level: advanced 9314e4d5475eSStefano Zampini 9315e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMCopyAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 9316e4d5475eSStefano Zampini @*/ 9317e4d5475eSStefano Zampini PetscErrorCode DMClearAuxiliaryVec(DM dm) 9318e4d5475eSStefano Zampini { 9319e4d5475eSStefano Zampini Vec *auxData; 9320e4d5475eSStefano Zampini PetscInt n, i, off = 0; 9321e4d5475eSStefano Zampini 9322e4d5475eSStefano Zampini PetscFunctionBegin; 9323e4d5475eSStefano Zampini PetscCall(PetscHMapAuxGetSize(dm->auxData, &n)); 9324d705d0eaSStefano Zampini PetscCall(PetscMalloc1(n, &auxData)); 9325e4d5475eSStefano Zampini PetscCall(PetscHMapAuxGetVals(dm->auxData, &off, auxData)); 9326d705d0eaSStefano Zampini for (i = 0; i < n; ++i) PetscCall(VecDestroy(&auxData[i])); 9327d705d0eaSStefano Zampini PetscCall(PetscFree(auxData)); 9328e4d5475eSStefano Zampini PetscCall(PetscHMapAuxDestroy(&dm->auxData)); 9329e4d5475eSStefano Zampini PetscCall(PetscHMapAuxCreate(&dm->auxData)); 93303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 93319a2a23afSMatthew G. Knepley } 9332b5a892a1SMatthew G. Knepley 9333cc4c1da9SBarry Smith /*@ 9334bb7acecfSBarry Smith DMPolytopeMatchOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9335b5a892a1SMatthew G. Knepley 933620f4b53cSBarry Smith Not Collective 9337b5a892a1SMatthew G. Knepley 9338b5a892a1SMatthew G. Knepley Input Parameters: 9339bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9340b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9341b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9342b5a892a1SMatthew G. Knepley 9343b5a892a1SMatthew G. Knepley Output Parameters: 9344bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9345b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9346b5a892a1SMatthew G. Knepley 9347b5a892a1SMatthew G. Knepley Level: advanced 9348b5a892a1SMatthew G. Knepley 9349bb7acecfSBarry Smith Note: 9350bb7acecfSBarry Smith An arrangement is a face order combined with an orientation for each face 9351bb7acecfSBarry Smith 935285036b15SMatthew G. Knepley Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2 9353bb7acecfSBarry Smith that labels each arrangement (face ordering plus orientation for each face). 9354bb7acecfSBarry Smith 9355bb7acecfSBarry Smith See `DMPolytopeMatchVertexOrientation()` to find a new vertex orientation that takes the source vertex arrangement to the target vertex arrangement 9356bb7acecfSBarry Smith 93571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetVertexOrientation()` 9358b5a892a1SMatthew G. Knepley @*/ 9359d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt, PetscBool *found) 9360d71ae5a4SJacob Faibussowitsch { 9361b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetConeSize(ct); 936285036b15SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2; 9363b5a892a1SMatthew G. Knepley PetscInt o, c; 9364b5a892a1SMatthew G. Knepley 9365b5a892a1SMatthew G. Knepley PetscFunctionBegin; 93669371c9d4SSatish Balay if (!nO) { 93679371c9d4SSatish Balay *ornt = 0; 93689371c9d4SSatish Balay *found = PETSC_TRUE; 93693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 93709371c9d4SSatish Balay } 9371b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 937285036b15SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangement(ct, o); 9373b5a892a1SMatthew G. Knepley 93749371c9d4SSatish Balay for (c = 0; c < cS; ++c) 93759371c9d4SSatish Balay if (sourceCone[arr[c * 2]] != targetCone[c]) break; 93769371c9d4SSatish Balay if (c == cS) { 93779371c9d4SSatish Balay *ornt = o; 93789371c9d4SSatish Balay break; 93799371c9d4SSatish Balay } 9380b5a892a1SMatthew G. Knepley } 9381b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 93823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9383b5a892a1SMatthew G. Knepley } 9384b5a892a1SMatthew G. Knepley 9385cc4c1da9SBarry Smith /*@ 9386bb7acecfSBarry Smith DMPolytopeGetOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9387b5a892a1SMatthew G. Knepley 938820f4b53cSBarry Smith Not Collective 9389b5a892a1SMatthew G. Knepley 9390b5a892a1SMatthew G. Knepley Input Parameters: 9391bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9392b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9393b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9394b5a892a1SMatthew G. Knepley 93952fe279fdSBarry Smith Output Parameter: 9396bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9397b5a892a1SMatthew G. Knepley 9398b5a892a1SMatthew G. Knepley Level: advanced 9399b5a892a1SMatthew G. Knepley 9400bb7acecfSBarry Smith Note: 9401bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchOrientation()` except it will generate an error if no suitable orientation can be found. 9402bb7acecfSBarry Smith 940373ff1848SBarry Smith Developer Note: 9404bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchOrientation()` and error if none is found 9405bb7acecfSBarry Smith 94061cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchOrientation()`, `DMPolytopeGetVertexOrientation()`, `DMPolytopeMatchVertexOrientation()` 9407b5a892a1SMatthew G. Knepley @*/ 9408d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9409d71ae5a4SJacob Faibussowitsch { 9410b5a892a1SMatthew G. Knepley PetscBool found; 9411b5a892a1SMatthew G. Knepley 9412b5a892a1SMatthew G. Knepley PetscFunctionBegin; 94139566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchOrientation(ct, sourceCone, targetCone, ornt, &found)); 94147a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 94153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9416b5a892a1SMatthew G. Knepley } 9417b5a892a1SMatthew G. Knepley 9418cc4c1da9SBarry Smith /*@ 9419bb7acecfSBarry Smith DMPolytopeMatchVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9420b5a892a1SMatthew G. Knepley 942120f4b53cSBarry Smith Not Collective 9422b5a892a1SMatthew G. Knepley 9423b5a892a1SMatthew G. Knepley Input Parameters: 9424bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9425b5a892a1SMatthew G. Knepley . sourceVert - The source arrangement of vertices 9426b5a892a1SMatthew G. Knepley - targetVert - The target arrangement of vertices 9427b5a892a1SMatthew G. Knepley 9428b5a892a1SMatthew G. Knepley Output Parameters: 9429bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9430b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9431b5a892a1SMatthew G. Knepley 9432b5a892a1SMatthew G. Knepley Level: advanced 9433b5a892a1SMatthew G. Knepley 943473ff1848SBarry Smith Notes: 9435bb7acecfSBarry Smith An arrangement is a vertex order 9436bb7acecfSBarry Smith 943785036b15SMatthew G. Knepley Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2 9438bb7acecfSBarry Smith that labels each arrangement (vertex ordering). 9439bb7acecfSBarry Smith 9440bb7acecfSBarry Smith See `DMPolytopeMatchOrientation()` to find a new face orientation that takes the source face arrangement to the target face arrangement 9441bb7acecfSBarry Smith 944285036b15SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchOrientation()`, `DMPolytopeTypeGetNumVertices()`, `DMPolytopeTypeGetVertexArrangement()` 9443b5a892a1SMatthew G. Knepley @*/ 9444d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchVertexOrientation(DMPolytopeType ct, const PetscInt sourceVert[], const PetscInt targetVert[], PetscInt *ornt, PetscBool *found) 9445d71ae5a4SJacob Faibussowitsch { 9446b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetNumVertices(ct); 944785036b15SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2; 9448b5a892a1SMatthew G. Knepley PetscInt o, c; 9449b5a892a1SMatthew G. Knepley 9450b5a892a1SMatthew G. Knepley PetscFunctionBegin; 94519371c9d4SSatish Balay if (!nO) { 94529371c9d4SSatish Balay *ornt = 0; 94539371c9d4SSatish Balay *found = PETSC_TRUE; 94543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 94559371c9d4SSatish Balay } 9456b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 945785036b15SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetVertexArrangement(ct, o); 9458b5a892a1SMatthew G. Knepley 94599371c9d4SSatish Balay for (c = 0; c < cS; ++c) 94609371c9d4SSatish Balay if (sourceVert[arr[c]] != targetVert[c]) break; 94619371c9d4SSatish Balay if (c == cS) { 94629371c9d4SSatish Balay *ornt = o; 94639371c9d4SSatish Balay break; 94649371c9d4SSatish Balay } 9465b5a892a1SMatthew G. Knepley } 9466b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 94673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9468b5a892a1SMatthew G. Knepley } 9469b5a892a1SMatthew G. Knepley 9470cc4c1da9SBarry Smith /*@ 9471bb7acecfSBarry Smith DMPolytopeGetVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9472b5a892a1SMatthew G. Knepley 947320f4b53cSBarry Smith Not Collective 9474b5a892a1SMatthew G. Knepley 9475b5a892a1SMatthew G. Knepley Input Parameters: 9476bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9477b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of vertices 9478b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of vertices 9479b5a892a1SMatthew G. Knepley 94802fe279fdSBarry Smith Output Parameter: 9481bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9482b5a892a1SMatthew G. Knepley 9483b5a892a1SMatthew G. Knepley Level: advanced 9484b5a892a1SMatthew G. Knepley 9485bb7acecfSBarry Smith Note: 9486bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchVertexOrientation()` except it errors if not orientation is possible. 9487bb7acecfSBarry Smith 948873ff1848SBarry Smith Developer Note: 9489bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchVertexOrientation()` and error if none is found 9490bb7acecfSBarry Smith 94911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetOrientation()` 9492b5a892a1SMatthew G. Knepley @*/ 9493d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetVertexOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9494d71ae5a4SJacob Faibussowitsch { 9495b5a892a1SMatthew G. Knepley PetscBool found; 9496b5a892a1SMatthew G. Knepley 9497b5a892a1SMatthew G. Knepley PetscFunctionBegin; 94989566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchVertexOrientation(ct, sourceCone, targetCone, ornt, &found)); 94997a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 95003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9501b5a892a1SMatthew G. Knepley } 9502012bc364SMatthew G. Knepley 9503cc4c1da9SBarry Smith /*@ 9504012bc364SMatthew G. Knepley DMPolytopeInCellTest - Check whether a point lies inside the reference cell of given type 9505012bc364SMatthew G. Knepley 950620f4b53cSBarry Smith Not Collective 9507012bc364SMatthew G. Knepley 9508012bc364SMatthew G. Knepley Input Parameters: 9509bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9510012bc364SMatthew G. Knepley - point - Coordinates of the point 9511012bc364SMatthew G. Knepley 95122fe279fdSBarry Smith Output Parameter: 9513012bc364SMatthew G. Knepley . inside - Flag indicating whether the point is inside the reference cell of given type 9514012bc364SMatthew G. Knepley 9515012bc364SMatthew G. Knepley Level: advanced 9516012bc364SMatthew G. Knepley 95171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMLocatePoints()` 9518012bc364SMatthew G. Knepley @*/ 9519d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeInCellTest(DMPolytopeType ct, const PetscReal point[], PetscBool *inside) 9520d71ae5a4SJacob Faibussowitsch { 9521012bc364SMatthew G. Knepley PetscReal sum = 0.0; 9522012bc364SMatthew G. Knepley PetscInt d; 9523012bc364SMatthew G. Knepley 9524012bc364SMatthew G. Knepley PetscFunctionBegin; 9525012bc364SMatthew G. Knepley *inside = PETSC_TRUE; 9526012bc364SMatthew G. Knepley switch (ct) { 9527012bc364SMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 9528012bc364SMatthew G. Knepley case DM_POLYTOPE_TETRAHEDRON: 9529012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) { 95309371c9d4SSatish Balay if (point[d] < -1.0) { 95319371c9d4SSatish Balay *inside = PETSC_FALSE; 95329371c9d4SSatish Balay break; 95339371c9d4SSatish Balay } 9534012bc364SMatthew G. Knepley sum += point[d]; 9535012bc364SMatthew G. Knepley } 95369371c9d4SSatish Balay if (sum > PETSC_SMALL) { 95379371c9d4SSatish Balay *inside = PETSC_FALSE; 95389371c9d4SSatish Balay break; 95399371c9d4SSatish Balay } 9540012bc364SMatthew G. Knepley break; 9541012bc364SMatthew G. Knepley case DM_POLYTOPE_QUADRILATERAL: 9542012bc364SMatthew G. Knepley case DM_POLYTOPE_HEXAHEDRON: 9543012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) 95449371c9d4SSatish Balay if (PetscAbsReal(point[d]) > 1. + PETSC_SMALL) { 95459371c9d4SSatish Balay *inside = PETSC_FALSE; 9546012bc364SMatthew G. Knepley break; 95479371c9d4SSatish Balay } 95489371c9d4SSatish Balay break; 9549d71ae5a4SJacob Faibussowitsch default: 9550d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported polytope type %s", DMPolytopeTypes[ct]); 9551012bc364SMatthew G. Knepley } 95523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9553012bc364SMatthew G. Knepley } 9554adc21957SMatthew G. Knepley 9555adc21957SMatthew G. Knepley /*@ 9556adc21957SMatthew G. Knepley DMReorderSectionSetDefault - Set flag indicating whether the local section should be reordered by default 9557adc21957SMatthew G. Knepley 9558adc21957SMatthew G. Knepley Logically collective 9559adc21957SMatthew G. Knepley 9560adc21957SMatthew G. Knepley Input Parameters: 9561adc21957SMatthew G. Knepley + dm - The DM 9562adc21957SMatthew G. Knepley - reorder - Flag for reordering 9563adc21957SMatthew G. Knepley 9564adc21957SMatthew G. Knepley Level: intermediate 9565adc21957SMatthew G. Knepley 9566adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetDefault()` 9567adc21957SMatthew G. Knepley @*/ 9568adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetDefault(DM dm, DMReorderDefaultFlag reorder) 9569adc21957SMatthew G. Knepley { 9570adc21957SMatthew G. Knepley PetscFunctionBegin; 9571adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9572adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionSetDefault_C", (DM, DMReorderDefaultFlag), (dm, reorder)); 9573adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9574adc21957SMatthew G. Knepley } 9575adc21957SMatthew G. Knepley 9576adc21957SMatthew G. Knepley /*@ 9577adc21957SMatthew G. Knepley DMReorderSectionGetDefault - Get flag indicating whether the local section should be reordered by default 9578adc21957SMatthew G. Knepley 9579adc21957SMatthew G. Knepley Not collective 9580adc21957SMatthew G. Knepley 9581adc21957SMatthew G. Knepley Input Parameter: 9582adc21957SMatthew G. Knepley . dm - The DM 9583adc21957SMatthew G. Knepley 9584adc21957SMatthew G. Knepley Output Parameter: 9585adc21957SMatthew G. Knepley . reorder - Flag for reordering 9586adc21957SMatthew G. Knepley 9587adc21957SMatthew G. Knepley Level: intermediate 9588adc21957SMatthew G. Knepley 9589adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()` 9590adc21957SMatthew G. Knepley @*/ 9591adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetDefault(DM dm, DMReorderDefaultFlag *reorder) 9592adc21957SMatthew G. Knepley { 9593adc21957SMatthew G. Knepley PetscFunctionBegin; 9594adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9595adc21957SMatthew G. Knepley PetscAssertPointer(reorder, 2); 9596adc21957SMatthew G. Knepley *reorder = DM_REORDER_DEFAULT_NOTSET; 9597adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionGetDefault_C", (DM, DMReorderDefaultFlag *), (dm, reorder)); 9598adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9599adc21957SMatthew G. Knepley } 9600adc21957SMatthew G. Knepley 9601cc4c1da9SBarry Smith /*@ 9602adc21957SMatthew G. Knepley DMReorderSectionSetType - Set the type of local section reordering 9603adc21957SMatthew G. Knepley 9604adc21957SMatthew G. Knepley Logically collective 9605adc21957SMatthew G. Knepley 9606adc21957SMatthew G. Knepley Input Parameters: 9607adc21957SMatthew G. Knepley + dm - The DM 9608adc21957SMatthew G. Knepley - reorder - The reordering method 9609adc21957SMatthew G. Knepley 9610adc21957SMatthew G. Knepley Level: intermediate 9611adc21957SMatthew G. Knepley 9612adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetType()`, `DMReorderSectionSetDefault()` 9613adc21957SMatthew G. Knepley @*/ 9614adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetType(DM dm, MatOrderingType reorder) 9615adc21957SMatthew G. Knepley { 9616adc21957SMatthew G. Knepley PetscFunctionBegin; 9617adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9618adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionSetType_C", (DM, MatOrderingType), (dm, reorder)); 9619adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9620adc21957SMatthew G. Knepley } 9621adc21957SMatthew G. Knepley 9622cc4c1da9SBarry Smith /*@ 9623adc21957SMatthew G. Knepley DMReorderSectionGetType - Get the reordering type for the local section 9624adc21957SMatthew G. Knepley 9625adc21957SMatthew G. Knepley Not collective 9626adc21957SMatthew G. Knepley 9627adc21957SMatthew G. Knepley Input Parameter: 9628adc21957SMatthew G. Knepley . dm - The DM 9629adc21957SMatthew G. Knepley 9630adc21957SMatthew G. Knepley Output Parameter: 9631adc21957SMatthew G. Knepley . reorder - The reordering method 9632adc21957SMatthew G. Knepley 9633adc21957SMatthew G. Knepley Level: intermediate 9634adc21957SMatthew G. Knepley 9635adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()`, `DMReorderSectionGetDefault()` 9636adc21957SMatthew G. Knepley @*/ 9637adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetType(DM dm, MatOrderingType *reorder) 9638adc21957SMatthew G. Knepley { 9639adc21957SMatthew G. Knepley PetscFunctionBegin; 9640adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9641adc21957SMatthew G. Knepley PetscAssertPointer(reorder, 2); 9642adc21957SMatthew G. Knepley *reorder = NULL; 9643adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionGetType_C", (DM, MatOrderingType *), (dm, reorder)); 9644adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9645adc21957SMatthew G. Knepley } 9646