xref: /petsc/src/dm/interface/dm.c (revision bfe80ac4a46d58cb7760074b25f5e81b2f541d8a)
1d0295fc0SJunchao Zhang #include <petscvec.h>
2af0996ceSBarry Smith #include <petsc/private/dmimpl.h>      /*I      "petscdm.h"          I*/
3c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I      "petscdmlabel.h"     I*/
4e6f8dbb6SToby Isaac #include <petsc/private/petscdsimpl.h> /*I      "petscds.h"     I*/
53e922f36SToby Isaac #include <petscdmplex.h>
6d2b2dc1eSMatthew G. Knepley #include <petscdmceed.h>
7f19dbd58SToby Isaac #include <petscdmfield.h>
80c312b8eSJed Brown #include <petscsf.h>
92764a2aaSMatthew G. Knepley #include <petscds.h>
1047c6ae99SBarry Smith 
11f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED
12f918ec44SMatthew G. Knepley   #include <petscfeceed.h>
13f918ec44SMatthew G. Knepley #endif
14f918ec44SMatthew G. Knepley 
15732e2eb9SMatthew G Knepley PetscClassId DM_CLASSID;
16d67d17b1SMatthew G. Knepley PetscClassId DMLABEL_CLASSID;
1742d0c57aSJames Wright PetscLogEvent DM_Convert, DM_GlobalToLocal, DM_LocalToGlobal, DM_LocalToLocal, DM_LocatePoints, DM_Coarsen, DM_Refine, DM_CreateInterpolation, DM_CreateRestriction, DM_CreateInjection, DM_CreateMatrix, DM_CreateMassMatrix, DM_Load, DM_View, DM_AdaptInterpolator, DM_ProjectFunction;
1867a56275SMatthew G Knepley 
19ea78f98cSLisandro Dalcin const char *const DMBoundaryTypes[]          = {"NONE", "GHOSTED", "MIRROR", "PERIODIC", "TWIST", "DMBoundaryType", "DM_BOUNDARY_", NULL};
20d1b3049bSMatthew G. Knepley const char *const DMBoundaryConditionTypes[] = {"INVALID", "ESSENTIAL", "NATURAL", "INVALID", "INVALID", "ESSENTIAL_FIELD", "NATURAL_FIELD", "INVALID", "INVALID", "ESSENTIAL_BD_FIELD", "NATURAL_RIEMANN", "DMBoundaryConditionType", "DM_BC_", NULL};
210e762ea3SJed Brown const char *const DMBlockingTypes[]          = {"TOPOLOGICAL_POINT", "FIELD_NODE", "DMBlockingType", "DM_BLOCKING_", NULL};
22476787b7SMatthew G. Knepley const char *const DMPolytopeTypes[] =
23476787b7SMatthew G. Knepley   {"vertex",  "segment",      "tensor_segment", "triangle", "quadrilateral",  "tensor_quad",  "tetrahedron", "hexahedron", "triangular_prism", "tensor_triangular_prism", "tensor_quadrilateral_prism", "pyramid", "FV_ghost_cell", "interior_ghost_cell",
24476787b7SMatthew G. Knepley    "unknown", "unknown_cell", "unknown_face",   "invalid",  "DMPolytopeType", "DM_POLYTOPE_", NULL};
252cbb9b06SVaclav Hapla const char *const DMCopyLabelsModes[] = {"replace", "keep", "fail", "DMCopyLabelsMode", "DM_COPY_LABELS_", NULL};
2660c22052SBarry Smith 
27a4121054SBarry Smith /*@
28bb7acecfSBarry Smith   DMCreate - Creates an empty `DM` object. `DM`s are the abstract objects in PETSc that mediate between meshes and discretizations and the
290b4b7b1cSBarry Smith   algebraic solvers, time integrators, and optimization algorithms in PETSc.
30a4121054SBarry Smith 
31d083f849SBarry Smith   Collective
32a4121054SBarry Smith 
33a4121054SBarry Smith   Input Parameter:
34bb7acecfSBarry Smith . comm - The communicator for the `DM` object
35a4121054SBarry Smith 
36a4121054SBarry Smith   Output Parameter:
37bb7acecfSBarry Smith . dm - The `DM` object
38a4121054SBarry Smith 
39a4121054SBarry Smith   Level: beginner
40a4121054SBarry Smith 
41bb7acecfSBarry Smith   Notes:
42bb7acecfSBarry Smith   See `DMType` for a brief summary of available `DM`.
43bb7acecfSBarry Smith 
44bb7acecfSBarry Smith   The type must then be set with `DMSetType()`. If you never call `DMSetType()` it will generate an
450b4b7b1cSBarry Smith   error when you try to use the `dm`.
460b4b7b1cSBarry Smith 
470b4b7b1cSBarry Smith   `DM` is an orphan initialism or orphan acronym, the letters have no meaning and never did.
48bb7acecfSBarry Smith 
491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMType`, `DMDACreate()`, `DMDA`, `DMSLICED`, `DMCOMPOSITE`, `DMPLEX`, `DMMOAB`, `DMNETWORK`
50a4121054SBarry Smith @*/
51d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreate(MPI_Comm comm, DM *dm)
52d71ae5a4SJacob Faibussowitsch {
53a4121054SBarry Smith   DM      v;
54e5e52638SMatthew G. Knepley   PetscDS ds;
55a4121054SBarry Smith 
56a4121054SBarry Smith   PetscFunctionBegin;
574f572ea9SToby Isaac   PetscAssertPointer(dm, 2);
58377f809aSBarry Smith 
599566063dSJacob Faibussowitsch   PetscCall(DMInitializePackage());
609566063dSJacob Faibussowitsch   PetscCall(PetscHeaderCreate(v, DM_CLASSID, "DM", "Distribution Manager", "DM", comm, DMDestroy, DMView));
6162e5d2d2SJDBetteridge   ((PetscObject)v)->non_cyclic_references = &DMCountNonCyclicReferences;
6249be4549SMatthew G. Knepley   v->setupcalled                          = PETSC_FALSE;
6349be4549SMatthew G. Knepley   v->setfromoptionscalled                 = PETSC_FALSE;
640298fd71SBarry Smith   v->ltogmap                              = NULL;
65a4ea9b21SRichard Tran Mills   v->bind_below                           = 0;
661411c6eeSJed Brown   v->bs                                   = 1;
67171400e9SBarry Smith   v->coloringtype                         = IS_COLORING_GLOBAL;
689566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &v->sf));
699566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &v->sectionSF));
70c58f1c22SToby Isaac   v->labels                    = NULL;
7134aa8a36SMatthew G. Knepley   v->adjacency[0]              = PETSC_FALSE;
7234aa8a36SMatthew G. Knepley   v->adjacency[1]              = PETSC_TRUE;
73c58f1c22SToby Isaac   v->depthLabel                = NULL;
74ba2698f1SMatthew G. Knepley   v->celltypeLabel             = NULL;
751bb6d2a8SBarry Smith   v->localSection              = NULL;
761bb6d2a8SBarry Smith   v->globalSection             = NULL;
773b8ba7d1SJed Brown   v->defaultConstraint.section = NULL;
783b8ba7d1SJed Brown   v->defaultConstraint.mat     = NULL;
7979769bd5SJed Brown   v->defaultConstraint.bias    = NULL;
806858538eSMatthew G. Knepley   v->coordinates[0].dim        = PETSC_DEFAULT;
816858538eSMatthew G. Knepley   v->coordinates[1].dim        = PETSC_DEFAULT;
826858538eSMatthew G. Knepley   v->sparseLocalize            = PETSC_TRUE;
8396173672SStefano Zampini   v->dim                       = PETSC_DETERMINE;
84435a35e8SMatthew G Knepley   {
85435a35e8SMatthew G Knepley     PetscInt i;
86435a35e8SMatthew G Knepley     for (i = 0; i < 10; ++i) {
870298fd71SBarry Smith       v->nullspaceConstructors[i]     = NULL;
88f9d4088aSMatthew G. Knepley       v->nearnullspaceConstructors[i] = NULL;
89435a35e8SMatthew G Knepley     }
90435a35e8SMatthew G Knepley   }
919566063dSJacob Faibussowitsch   PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds));
9207218a29SMatthew G. Knepley   PetscCall(DMSetRegionDS(v, NULL, NULL, ds, NULL));
939566063dSJacob Faibussowitsch   PetscCall(PetscDSDestroy(&ds));
949566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxCreate(&v->auxData));
9514f150ffSMatthew G. Knepley   v->dmBC              = NULL;
96a8fb8f29SToby Isaac   v->coarseMesh        = NULL;
97f4d763aaSMatthew G. Knepley   v->outputSequenceNum = -1;
98cdb7a50dSMatthew G. Knepley   v->outputSequenceVal = 0.0;
999566063dSJacob Faibussowitsch   PetscCall(DMSetVecType(v, VECSTANDARD));
1009566063dSJacob Faibussowitsch   PetscCall(DMSetMatType(v, MATAIJ));
1014a7a4c06SLawrence Mitchell 
1021411c6eeSJed Brown   *dm = v;
1033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
104a4121054SBarry Smith }
105a4121054SBarry Smith 
10638221697SMatthew G. Knepley /*@
107bb7acecfSBarry Smith   DMClone - Creates a `DM` object with the same topology as the original.
10838221697SMatthew G. Knepley 
109d083f849SBarry Smith   Collective
11038221697SMatthew G. Knepley 
11138221697SMatthew G. Knepley   Input Parameter:
112bb7acecfSBarry Smith . dm - The original `DM` object
11338221697SMatthew G. Knepley 
11438221697SMatthew G. Knepley   Output Parameter:
115bb7acecfSBarry Smith . newdm - The new `DM` object
11638221697SMatthew G. Knepley 
11738221697SMatthew G. Knepley   Level: beginner
11838221697SMatthew G. Knepley 
1191cb8cacdSPatrick Sanan   Notes:
120bb7acecfSBarry Smith   For some `DM` implementations this is a shallow clone, the result of which may share (reference counted) information with its parent. For example,
121bb7acecfSBarry Smith   `DMClone()` applied to a `DMPLEX` object will result in a new `DMPLEX` that shares the topology with the original `DMPLEX`. It does not
122bb7acecfSBarry Smith   share the `PetscSection` of the original `DM`.
1231bb6d2a8SBarry Smith 
124bb7acecfSBarry Smith   The clone is considered set up if the original has been set up.
12589706ed2SPatrick Sanan 
126bb7acecfSBarry Smith   Use `DMConvert()` for a general way to create new `DM` from a given `DM`
127bb7acecfSBarry Smith 
12860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMSetType()`, `DMSetLocalSection()`, `DMSetGlobalSection()`, `DMPLEX`, `DMConvert()`
12938221697SMatthew G. Knepley @*/
130d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClone(DM dm, DM *newdm)
131d71ae5a4SJacob Faibussowitsch {
13238221697SMatthew G. Knepley   PetscSF              sf;
13338221697SMatthew G. Knepley   Vec                  coords;
13438221697SMatthew G. Knepley   void                *ctx;
135ec196627SMatthew G. Knepley   MatOrderingType      otype;
136ec196627SMatthew G. Knepley   DMReorderDefaultFlag flg;
1376858538eSMatthew G. Knepley   PetscInt             dim, cdim, i;
13838221697SMatthew G. Knepley 
13938221697SMatthew G. Knepley   PetscFunctionBegin;
14038221697SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1414f572ea9SToby Isaac   PetscAssertPointer(newdm, 2);
1429566063dSJacob Faibussowitsch   PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), newdm));
1439566063dSJacob Faibussowitsch   PetscCall(DMCopyLabels(dm, *newdm, PETSC_COPY_VALUES, PETSC_TRUE, DM_COPY_LABELS_FAIL));
144ddf8437dSMatthew G. Knepley   (*newdm)->leveldown     = dm->leveldown;
145ddf8437dSMatthew G. Knepley   (*newdm)->levelup       = dm->levelup;
146c8a6034eSMark   (*newdm)->prealloc_only = dm->prealloc_only;
147fc214432SJed Brown   (*newdm)->prealloc_skip = dm->prealloc_skip;
1489566063dSJacob Faibussowitsch   PetscCall(PetscFree((*newdm)->vectype));
1499566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*newdm)->vectype));
1509566063dSJacob Faibussowitsch   PetscCall(PetscFree((*newdm)->mattype));
1519566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*newdm)->mattype));
1529566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
1539566063dSJacob Faibussowitsch   PetscCall(DMSetDimension(*newdm, dim));
154dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, clone, newdm);
1553f22bcbcSToby Isaac   (*newdm)->setupcalled = dm->setupcalled;
1569566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sf));
1579566063dSJacob Faibussowitsch   PetscCall(DMSetPointSF(*newdm, sf));
1589566063dSJacob Faibussowitsch   PetscCall(DMGetApplicationContext(dm, &ctx));
1599566063dSJacob Faibussowitsch   PetscCall(DMSetApplicationContext(*newdm, ctx));
160ec196627SMatthew G. Knepley   PetscCall(DMReorderSectionGetDefault(dm, &flg));
161ec196627SMatthew G. Knepley   PetscCall(DMReorderSectionSetDefault(*newdm, flg));
162ec196627SMatthew G. Knepley   PetscCall(DMReorderSectionGetType(dm, &otype));
163ec196627SMatthew G. Knepley   PetscCall(DMReorderSectionSetType(*newdm, otype));
1646858538eSMatthew G. Knepley   for (i = 0; i < 2; ++i) {
1656858538eSMatthew G. Knepley     if (dm->coordinates[i].dm) {
166be4c1c3eSMatthew G. Knepley       DM           ncdm;
167be4c1c3eSMatthew G. Knepley       PetscSection cs;
1685a0206caSToby Isaac       PetscInt     pEnd = -1, pEndMax = -1;
169be4c1c3eSMatthew G. Knepley 
1706858538eSMatthew G. Knepley       PetscCall(DMGetLocalSection(dm->coordinates[i].dm, &cs));
1719566063dSJacob Faibussowitsch       if (cs) PetscCall(PetscSectionGetChart(cs, NULL, &pEnd));
172462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&pEnd, &pEndMax, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm)));
1735a0206caSToby Isaac       if (pEndMax >= 0) {
1746858538eSMatthew G. Knepley         PetscCall(DMClone(dm->coordinates[i].dm, &ncdm));
1756858538eSMatthew G. Knepley         PetscCall(DMCopyDisc(dm->coordinates[i].dm, ncdm));
1769566063dSJacob Faibussowitsch         PetscCall(DMSetLocalSection(ncdm, cs));
1775e50ca95SJames Wright         if (dm->coordinates[i].dm->periodic.setup) {
1785e50ca95SJames Wright           ncdm->periodic.setup = dm->coordinates[i].dm->periodic.setup;
1795e50ca95SJames Wright           PetscCall(ncdm->periodic.setup(ncdm));
1805e50ca95SJames Wright         }
1816858538eSMatthew G. Knepley         if (i) PetscCall(DMSetCellCoordinateDM(*newdm, ncdm));
1826858538eSMatthew G. Knepley         else PetscCall(DMSetCoordinateDM(*newdm, ncdm));
1839566063dSJacob Faibussowitsch         PetscCall(DMDestroy(&ncdm));
184be4c1c3eSMatthew G. Knepley       }
185be4c1c3eSMatthew G. Knepley     }
1866858538eSMatthew G. Knepley   }
1879566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
1889566063dSJacob Faibussowitsch   PetscCall(DMSetCoordinateDim(*newdm, cdim));
1899566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinatesLocal(dm, &coords));
19038221697SMatthew G. Knepley   if (coords) {
1919566063dSJacob Faibussowitsch     PetscCall(DMSetCoordinatesLocal(*newdm, coords));
19238221697SMatthew G. Knepley   } else {
1939566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinates(dm, &coords));
1949566063dSJacob Faibussowitsch     if (coords) PetscCall(DMSetCoordinates(*newdm, coords));
19538221697SMatthew G. Knepley   }
1966858538eSMatthew G. Knepley   PetscCall(DMGetCellCoordinatesLocal(dm, &coords));
1976858538eSMatthew G. Knepley   if (coords) {
1986858538eSMatthew G. Knepley     PetscCall(DMSetCellCoordinatesLocal(*newdm, coords));
1996858538eSMatthew G. Knepley   } else {
2006858538eSMatthew G. Knepley     PetscCall(DMGetCellCoordinates(dm, &coords));
2016858538eSMatthew G. Knepley     if (coords) PetscCall(DMSetCellCoordinates(*newdm, coords));
2026858538eSMatthew G. Knepley   }
20390b157c4SStefano Zampini   {
2044fb89dddSMatthew G. Knepley     const PetscReal *maxCell, *Lstart, *L;
2056858538eSMatthew G. Knepley 
2064fb89dddSMatthew G. Knepley     PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
2074fb89dddSMatthew G. Knepley     PetscCall(DMSetPeriodicity(*newdm, maxCell, Lstart, L));
208c6b900c6SMatthew G. Knepley   }
20934aa8a36SMatthew G. Knepley   {
21034aa8a36SMatthew G. Knepley     PetscBool useCone, useClosure;
21134aa8a36SMatthew G. Knepley 
2129566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, &useCone, &useClosure));
2139566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(*newdm, PETSC_DEFAULT, useCone, useClosure));
21434aa8a36SMatthew G. Knepley   }
2153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21638221697SMatthew G. Knepley }
21738221697SMatthew G. Knepley 
2185d83a8b1SBarry Smith /*@
2195d83a8b1SBarry Smith   DMSetVecType - Sets the type of vector to be created with `DMCreateLocalVector()` and `DMCreateGlobalVector()`
2209a42bb27SBarry Smith 
22120f4b53cSBarry Smith   Logically Collective
2229a42bb27SBarry Smith 
223147403d9SBarry Smith   Input Parameters:
22432546409SMatthew G. Knepley + dm    - initial distributed array
225bb7acecfSBarry Smith - ctype - the vector type, for example `VECSTANDARD`, `VECCUDA`, or `VECVIENNACL`
2269a42bb27SBarry Smith 
22720f4b53cSBarry Smith   Options Database Key:
228147403d9SBarry Smith . -dm_vec_type ctype - the type of vector to create
2299a42bb27SBarry Smith 
2309a42bb27SBarry Smith   Level: intermediate
2319a42bb27SBarry Smith 
23260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMGetVecType()`, `DMSetMatType()`, `DMGetMatType()`,
233bb7acecfSBarry Smith           `VECSTANDARD`, `VECCUDA`, `VECVIENNACL`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`
2349a42bb27SBarry Smith @*/
23532546409SMatthew G. Knepley PetscErrorCode DMSetVecType(DM dm, VecType ctype)
236d71ae5a4SJacob Faibussowitsch {
23732546409SMatthew G. Knepley   char *tmp;
23832546409SMatthew G. Knepley 
2399a42bb27SBarry Smith   PetscFunctionBegin;
24032546409SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
24132546409SMatthew G. Knepley   PetscAssertPointer(ctype, 2);
24232546409SMatthew G. Knepley   tmp = (char *)dm->vectype;
24332546409SMatthew G. Knepley   PetscCall(PetscStrallocpy(ctype, (char **)&dm->vectype));
24432546409SMatthew G. Knepley   PetscCall(PetscFree(tmp));
2453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2469a42bb27SBarry Smith }
2479a42bb27SBarry Smith 
2485d83a8b1SBarry Smith /*@
249bb7acecfSBarry Smith   DMGetVecType - Gets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()`
250c0dedaeaSBarry Smith 
25120f4b53cSBarry Smith   Logically Collective
252c0dedaeaSBarry Smith 
253c0dedaeaSBarry Smith   Input Parameter:
254c0dedaeaSBarry Smith . da - initial distributed array
255c0dedaeaSBarry Smith 
256c0dedaeaSBarry Smith   Output Parameter:
257c0dedaeaSBarry Smith . ctype - the vector type
258c0dedaeaSBarry Smith 
259c0dedaeaSBarry Smith   Level: intermediate
260c0dedaeaSBarry Smith 
26160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMSetMatType()`, `DMGetMatType()`, `DMSetVecType()`
262c0dedaeaSBarry Smith @*/
263d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetVecType(DM da, VecType *ctype)
264d71ae5a4SJacob Faibussowitsch {
265c0dedaeaSBarry Smith   PetscFunctionBegin;
266c0dedaeaSBarry Smith   PetscValidHeaderSpecific(da, DM_CLASSID, 1);
267c0dedaeaSBarry Smith   *ctype = da->vectype;
2683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
269c0dedaeaSBarry Smith }
270c0dedaeaSBarry Smith 
2715f1ad066SMatthew G Knepley /*@
272bb7acecfSBarry Smith   VecGetDM - Gets the `DM` defining the data layout of the vector
2735f1ad066SMatthew G Knepley 
27420f4b53cSBarry Smith   Not Collective
2755f1ad066SMatthew G Knepley 
2765f1ad066SMatthew G Knepley   Input Parameter:
277bb7acecfSBarry Smith . v - The `Vec`
2785f1ad066SMatthew G Knepley 
2795f1ad066SMatthew G Knepley   Output Parameter:
280bb7acecfSBarry Smith . dm - The `DM`
2815f1ad066SMatthew G Knepley 
2825f1ad066SMatthew G Knepley   Level: intermediate
2835f1ad066SMatthew G Knepley 
284bb7acecfSBarry Smith   Note:
285bb7acecfSBarry Smith   A `Vec` may not have a `DM` associated with it.
286bb7acecfSBarry Smith 
2871cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecSetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()`
2885f1ad066SMatthew G Knepley @*/
289d71ae5a4SJacob Faibussowitsch PetscErrorCode VecGetDM(Vec v, DM *dm)
290d71ae5a4SJacob Faibussowitsch {
2915f1ad066SMatthew G Knepley   PetscFunctionBegin;
2925f1ad066SMatthew G Knepley   PetscValidHeaderSpecific(v, VEC_CLASSID, 1);
2934f572ea9SToby Isaac   PetscAssertPointer(dm, 2);
2949566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)v, "__PETSc_dm", (PetscObject *)dm));
2953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2965f1ad066SMatthew G Knepley }
2975f1ad066SMatthew G Knepley 
2985f1ad066SMatthew G Knepley /*@
299bb7acecfSBarry Smith   VecSetDM - Sets the `DM` defining the data layout of the vector.
3005f1ad066SMatthew G Knepley 
30120f4b53cSBarry Smith   Not Collective
3025f1ad066SMatthew G Knepley 
3035f1ad066SMatthew G Knepley   Input Parameters:
304bb7acecfSBarry Smith + v  - The `Vec`
305bb7acecfSBarry Smith - dm - The `DM`
3065f1ad066SMatthew G Knepley 
30720f4b53cSBarry Smith   Level: developer
30820f4b53cSBarry Smith 
30973ff1848SBarry Smith   Notes:
310bb7acecfSBarry Smith   This is rarely used, generally one uses `DMGetLocalVector()` or  `DMGetGlobalVector()` to create a vector associated with a given `DM`
311d9805387SMatthew G. Knepley 
312bb7acecfSBarry Smith   This is NOT the same as `DMCreateGlobalVector()` since it does not change the view methods or perform other customization, but merely sets the `DM` member.
313bb7acecfSBarry Smith 
3141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecGetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()`
3155f1ad066SMatthew G Knepley @*/
316d71ae5a4SJacob Faibussowitsch PetscErrorCode VecSetDM(Vec v, DM dm)
317d71ae5a4SJacob Faibussowitsch {
3185f1ad066SMatthew G Knepley   PetscFunctionBegin;
3195f1ad066SMatthew G Knepley   PetscValidHeaderSpecific(v, VEC_CLASSID, 1);
320d7f50e27SLisandro Dalcin   if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2);
3219566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)v, "__PETSc_dm", (PetscObject)dm));
3223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3235f1ad066SMatthew G Knepley }
3245f1ad066SMatthew G Knepley 
325cc4c1da9SBarry Smith /*@
326bb7acecfSBarry Smith   DMSetISColoringType - Sets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM`
3278f1509bcSBarry Smith 
32820f4b53cSBarry Smith   Logically Collective
3298f1509bcSBarry Smith 
3308f1509bcSBarry Smith   Input Parameters:
331bb7acecfSBarry Smith + dm    - the `DM` context
3328f1509bcSBarry Smith - ctype - the matrix type
3338f1509bcSBarry Smith 
33420f4b53cSBarry Smith   Options Database Key:
3358f1509bcSBarry Smith . -dm_is_coloring_type - global or local
3368f1509bcSBarry Smith 
3378f1509bcSBarry Smith   Level: intermediate
3388f1509bcSBarry Smith 
3391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`,
340bb7acecfSBarry Smith           `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL`
3418f1509bcSBarry Smith @*/
342d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetISColoringType(DM dm, ISColoringType ctype)
343d71ae5a4SJacob Faibussowitsch {
3448f1509bcSBarry Smith   PetscFunctionBegin;
3458f1509bcSBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3468f1509bcSBarry Smith   dm->coloringtype = ctype;
3473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3488f1509bcSBarry Smith }
3498f1509bcSBarry Smith 
350cc4c1da9SBarry Smith /*@
351bb7acecfSBarry Smith   DMGetISColoringType - Gets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM`
352521d9a4cSLisandro Dalcin 
35320f4b53cSBarry Smith   Logically Collective
354521d9a4cSLisandro Dalcin 
355521d9a4cSLisandro Dalcin   Input Parameter:
356bb7acecfSBarry Smith . dm - the `DM` context
3578f1509bcSBarry Smith 
3588f1509bcSBarry Smith   Output Parameter:
3598f1509bcSBarry Smith . ctype - the matrix type
3608f1509bcSBarry Smith 
36120f4b53cSBarry Smith   Options Database Key:
3628f1509bcSBarry Smith . -dm_is_coloring_type - global or local
3638f1509bcSBarry Smith 
3648f1509bcSBarry Smith   Level: intermediate
3658f1509bcSBarry Smith 
3661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`,
36742747ad1SJacob Faibussowitsch           `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL`
3688f1509bcSBarry Smith @*/
369d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetISColoringType(DM dm, ISColoringType *ctype)
370d71ae5a4SJacob Faibussowitsch {
3718f1509bcSBarry Smith   PetscFunctionBegin;
3728f1509bcSBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3738f1509bcSBarry Smith   *ctype = dm->coloringtype;
3743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3758f1509bcSBarry Smith }
3768f1509bcSBarry Smith 
377cc4c1da9SBarry Smith /*@
378bb7acecfSBarry Smith   DMSetMatType - Sets the type of matrix created with `DMCreateMatrix()`
3798f1509bcSBarry Smith 
38020f4b53cSBarry Smith   Logically Collective
3818f1509bcSBarry Smith 
3828f1509bcSBarry Smith   Input Parameters:
383bb7acecfSBarry Smith + dm    - the `DM` context
384bb7acecfSBarry Smith - ctype - the matrix type, for example `MATMPIAIJ`
385521d9a4cSLisandro Dalcin 
38620f4b53cSBarry Smith   Options Database Key:
387bb7acecfSBarry Smith . -dm_mat_type ctype - the type of the matrix to create, for example mpiaij
388521d9a4cSLisandro Dalcin 
389521d9a4cSLisandro Dalcin   Level: intermediate
390521d9a4cSLisandro Dalcin 
39142747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatType`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMGetMatType()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()`
392521d9a4cSLisandro Dalcin @*/
393d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatType(DM dm, MatType ctype)
394d71ae5a4SJacob Faibussowitsch {
39532546409SMatthew G. Knepley   char *tmp;
39632546409SMatthew G. Knepley 
397521d9a4cSLisandro Dalcin   PetscFunctionBegin;
398521d9a4cSLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
39932546409SMatthew G. Knepley   PetscAssertPointer(ctype, 2);
40032546409SMatthew G. Knepley   tmp = (char *)dm->mattype;
4019566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(ctype, (char **)&dm->mattype));
40232546409SMatthew G. Knepley   PetscCall(PetscFree(tmp));
4033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
404521d9a4cSLisandro Dalcin }
405521d9a4cSLisandro Dalcin 
406cc4c1da9SBarry Smith /*@
40720f4b53cSBarry Smith   DMGetMatType - Gets the type of matrix that would be created with `DMCreateMatrix()`
408c0dedaeaSBarry Smith 
40920f4b53cSBarry Smith   Logically Collective
410c0dedaeaSBarry Smith 
411c0dedaeaSBarry Smith   Input Parameter:
412bb7acecfSBarry Smith . dm - the `DM` context
413c0dedaeaSBarry Smith 
414c0dedaeaSBarry Smith   Output Parameter:
415c0dedaeaSBarry Smith . ctype - the matrix type
416c0dedaeaSBarry Smith 
417c0dedaeaSBarry Smith   Level: intermediate
418c0dedaeaSBarry Smith 
41942747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMSetMatType()`
420c0dedaeaSBarry Smith @*/
421d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetMatType(DM dm, MatType *ctype)
422d71ae5a4SJacob Faibussowitsch {
423c0dedaeaSBarry Smith   PetscFunctionBegin;
424c0dedaeaSBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
425c0dedaeaSBarry Smith   *ctype = dm->mattype;
4263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
427c0dedaeaSBarry Smith }
428c0dedaeaSBarry Smith 
429c688c046SMatthew G Knepley /*@
430bb7acecfSBarry Smith   MatGetDM - Gets the `DM` defining the data layout of the matrix
431c688c046SMatthew G Knepley 
43220f4b53cSBarry Smith   Not Collective
433c688c046SMatthew G Knepley 
434c688c046SMatthew G Knepley   Input Parameter:
435bb7acecfSBarry Smith . A - The `Mat`
436c688c046SMatthew G Knepley 
437c688c046SMatthew G Knepley   Output Parameter:
438bb7acecfSBarry Smith . dm - The `DM`
439c688c046SMatthew G Knepley 
440c688c046SMatthew G Knepley   Level: intermediate
441c688c046SMatthew G Knepley 
442bb7acecfSBarry Smith   Note:
443bb7acecfSBarry Smith   A matrix may not have a `DM` associated with it
444bb7acecfSBarry Smith 
44573ff1848SBarry Smith   Developer Note:
446bb7acecfSBarry Smith   Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with the `Mat` through a `PetscObjectCompose()` operation
4478f1509bcSBarry Smith 
4481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatSetDM()`, `DMCreateMatrix()`, `DMSetMatType()`
449c688c046SMatthew G Knepley @*/
450d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDM(Mat A, DM *dm)
451d71ae5a4SJacob Faibussowitsch {
452c688c046SMatthew G Knepley   PetscFunctionBegin;
453c688c046SMatthew G Knepley   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
4544f572ea9SToby Isaac   PetscAssertPointer(dm, 2);
4559566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_dm", (PetscObject *)dm));
4563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
457c688c046SMatthew G Knepley }
458c688c046SMatthew G Knepley 
459c688c046SMatthew G Knepley /*@
460bb7acecfSBarry Smith   MatSetDM - Sets the `DM` defining the data layout of the matrix
461c688c046SMatthew G Knepley 
46220f4b53cSBarry Smith   Not Collective
463c688c046SMatthew G Knepley 
464c688c046SMatthew G Knepley   Input Parameters:
46520f4b53cSBarry Smith + A  - The `Mat`
46620f4b53cSBarry Smith - dm - The `DM`
467c688c046SMatthew G Knepley 
468bb7acecfSBarry Smith   Level: developer
469c688c046SMatthew G Knepley 
470bb7acecfSBarry Smith   Note:
471bb7acecfSBarry Smith   This is rarely used in practice, rather `DMCreateMatrix()` is used to create a matrix associated with a particular `DM`
472bb7acecfSBarry Smith 
47373ff1848SBarry Smith   Developer Note:
474bb7acecfSBarry Smith   Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with
475bb7acecfSBarry Smith   the `Mat` through a `PetscObjectCompose()` operation
4768f1509bcSBarry Smith 
4771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatGetDM()`, `DMCreateMatrix()`, `DMSetMatType()`
478c688c046SMatthew G Knepley @*/
479d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetDM(Mat A, DM dm)
480d71ae5a4SJacob Faibussowitsch {
481c688c046SMatthew G Knepley   PetscFunctionBegin;
482c688c046SMatthew G Knepley   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
4838865f1eaSKarl Rupp   if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2);
4849566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_dm", (PetscObject)dm));
4853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
486c688c046SMatthew G Knepley }
487c688c046SMatthew G Knepley 
488cc4c1da9SBarry Smith /*@
489bb7acecfSBarry Smith   DMSetOptionsPrefix - Sets the prefix prepended to all option names when searching through the options database
4909a42bb27SBarry Smith 
49120f4b53cSBarry Smith   Logically Collective
4929a42bb27SBarry Smith 
493d8d19677SJose E. Roman   Input Parameters:
49460225df5SJacob Faibussowitsch + dm     - the `DM` context
495bb7acecfSBarry Smith - prefix - the prefix to prepend
4969a42bb27SBarry Smith 
49720f4b53cSBarry Smith   Level: advanced
49820f4b53cSBarry Smith 
49920f4b53cSBarry Smith   Note:
5009a42bb27SBarry Smith   A hyphen (-) must NOT be given at the beginning of the prefix name.
5019a42bb27SBarry Smith   The first character of all runtime options is AUTOMATICALLY the hyphen.
5029a42bb27SBarry Smith 
5031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscObjectSetOptionsPrefix()`, `DMSetFromOptions()`
5049a42bb27SBarry Smith @*/
505d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOptionsPrefix(DM dm, const char prefix[])
506d71ae5a4SJacob Faibussowitsch {
5079a42bb27SBarry Smith   PetscFunctionBegin;
5089a42bb27SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5099566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, prefix));
5101baa6e33SBarry Smith   if (dm->sf) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sf, prefix));
5111baa6e33SBarry Smith   if (dm->sectionSF) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sectionSF, prefix));
5123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5139a42bb27SBarry Smith }
5149a42bb27SBarry Smith 
515cc4c1da9SBarry Smith /*@
516da81f932SPierre Jolivet   DMAppendOptionsPrefix - Appends an additional string to an already existing prefix used for searching for
517bb7acecfSBarry Smith   `DM` options in the options database.
51831697293SDave May 
51920f4b53cSBarry Smith   Logically Collective
52031697293SDave May 
52131697293SDave May   Input Parameters:
522bb7acecfSBarry Smith + dm     - the `DM` context
523bb7acecfSBarry Smith - prefix - the string to append to the current prefix
52431697293SDave May 
52520f4b53cSBarry Smith   Level: advanced
52620f4b53cSBarry Smith 
52720f4b53cSBarry Smith   Note:
528bb7acecfSBarry Smith   If the `DM` does not currently have an options prefix then this value is used alone as the prefix as if `DMSetOptionsPrefix()` had been called.
52931697293SDave May   A hyphen (-) must NOT be given at the beginning of the prefix name.
53031697293SDave May   The first character of all runtime options is AUTOMATICALLY the hyphen.
53131697293SDave May 
5321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMGetOptionsPrefix()`, `PetscObjectAppendOptionsPrefix()`, `DMSetFromOptions()`
53331697293SDave May @*/
534d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAppendOptionsPrefix(DM dm, const char prefix[])
535d71ae5a4SJacob Faibussowitsch {
53631697293SDave May   PetscFunctionBegin;
53731697293SDave May   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5389566063dSJacob Faibussowitsch   PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, prefix));
5393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
54031697293SDave May }
54131697293SDave May 
542cc4c1da9SBarry Smith /*@
54331697293SDave May   DMGetOptionsPrefix - Gets the prefix used for searching for all
544bb7acecfSBarry Smith   DM options in the options database.
54531697293SDave May 
54631697293SDave May   Not Collective
54731697293SDave May 
5482fe279fdSBarry Smith   Input Parameter:
549bb7acecfSBarry Smith . dm - the `DM` context
55031697293SDave May 
5512fe279fdSBarry Smith   Output Parameter:
55231697293SDave May . prefix - pointer to the prefix string used is returned
55331697293SDave May 
55431697293SDave May   Level: advanced
55531697293SDave May 
55673ff1848SBarry Smith   Fortran Note:
55720f4b53cSBarry Smith   Pass in a string 'prefix' of
55820f4b53cSBarry Smith   sufficient length to hold the prefix.
55920f4b53cSBarry Smith 
5601cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMAppendOptionsPrefix()`, `DMSetFromOptions()`
56131697293SDave May @*/
562d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOptionsPrefix(DM dm, const char *prefix[])
563d71ae5a4SJacob Faibussowitsch {
56431697293SDave May   PetscFunctionBegin;
56531697293SDave May   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5669566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, prefix));
5673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56831697293SDave May }
56931697293SDave May 
57062e5d2d2SJDBetteridge static PetscErrorCode DMCountNonCyclicReferences_Internal(DM dm, PetscBool recurseCoarse, PetscBool recurseFine, PetscInt *ncrefct)
571d71ae5a4SJacob Faibussowitsch {
5726eb26441SStefano Zampini   PetscInt refct = ((PetscObject)dm)->refct;
57388bdff64SToby Isaac 
57488bdff64SToby Isaac   PetscFunctionBegin;
575aab5bcd8SJed Brown   *ncrefct = 0;
57688bdff64SToby Isaac   if (dm->coarseMesh && dm->coarseMesh->fineMesh == dm) {
57788bdff64SToby Isaac     refct--;
57888bdff64SToby Isaac     if (recurseCoarse) {
57988bdff64SToby Isaac       PetscInt coarseCount;
58088bdff64SToby Isaac 
58162e5d2d2SJDBetteridge       PetscCall(DMCountNonCyclicReferences_Internal(dm->coarseMesh, PETSC_TRUE, PETSC_FALSE, &coarseCount));
58288bdff64SToby Isaac       refct += coarseCount;
58388bdff64SToby Isaac     }
58488bdff64SToby Isaac   }
58588bdff64SToby Isaac   if (dm->fineMesh && dm->fineMesh->coarseMesh == dm) {
58688bdff64SToby Isaac     refct--;
58788bdff64SToby Isaac     if (recurseFine) {
58888bdff64SToby Isaac       PetscInt fineCount;
58988bdff64SToby Isaac 
59062e5d2d2SJDBetteridge       PetscCall(DMCountNonCyclicReferences_Internal(dm->fineMesh, PETSC_FALSE, PETSC_TRUE, &fineCount));
59188bdff64SToby Isaac       refct += fineCount;
59288bdff64SToby Isaac     }
59388bdff64SToby Isaac   }
59488bdff64SToby Isaac   *ncrefct = refct;
5953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
59688bdff64SToby Isaac }
59788bdff64SToby Isaac 
59862e5d2d2SJDBetteridge /* Generic wrapper for DMCountNonCyclicReferences_Internal() */
59962e5d2d2SJDBetteridge PetscErrorCode DMCountNonCyclicReferences(PetscObject dm, PetscInt *ncrefct)
60062e5d2d2SJDBetteridge {
60162e5d2d2SJDBetteridge   PetscFunctionBegin;
60262e5d2d2SJDBetteridge   PetscCall(DMCountNonCyclicReferences_Internal((DM)dm, PETSC_TRUE, PETSC_TRUE, ncrefct));
6033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
60462e5d2d2SJDBetteridge }
60562e5d2d2SJDBetteridge 
606d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyLabelLinkList_Internal(DM dm)
607d71ae5a4SJacob Faibussowitsch {
6085d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
609354557abSToby Isaac 
610354557abSToby Isaac   PetscFunctionBegin;
611354557abSToby Isaac   /* destroy the labels */
612354557abSToby Isaac   while (next) {
613354557abSToby Isaac     DMLabelLink tmp = next->next;
614354557abSToby Isaac 
6155d80c0bfSVaclav Hapla     if (next->label == dm->depthLabel) dm->depthLabel = NULL;
616ba2698f1SMatthew G. Knepley     if (next->label == dm->celltypeLabel) dm->celltypeLabel = NULL;
6179566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&next->label));
6189566063dSJacob Faibussowitsch     PetscCall(PetscFree(next));
619354557abSToby Isaac     next = tmp;
620354557abSToby Isaac   }
6215d80c0bfSVaclav Hapla   dm->labels = NULL;
6223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
623354557abSToby Isaac }
624354557abSToby Isaac 
62566976f2fSJacob Faibussowitsch static PetscErrorCode DMDestroyCoordinates_Private(DMCoordinates *c)
626d71ae5a4SJacob Faibussowitsch {
6276858538eSMatthew G. Knepley   PetscFunctionBegin;
6286858538eSMatthew G. Knepley   c->dim = PETSC_DEFAULT;
6296858538eSMatthew G. Knepley   PetscCall(DMDestroy(&c->dm));
6306858538eSMatthew G. Knepley   PetscCall(VecDestroy(&c->x));
6316858538eSMatthew G. Knepley   PetscCall(VecDestroy(&c->xl));
6326858538eSMatthew G. Knepley   PetscCall(DMFieldDestroy(&c->field));
6333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6346858538eSMatthew G. Knepley }
6356858538eSMatthew G. Knepley 
6360764c050SBarry Smith /*@
637bb7acecfSBarry Smith   DMDestroy - Destroys a `DM`.
63847c6ae99SBarry Smith 
63920f4b53cSBarry Smith   Collective
64047c6ae99SBarry Smith 
64147c6ae99SBarry Smith   Input Parameter:
642bb7acecfSBarry Smith . dm - the `DM` object to destroy
64347c6ae99SBarry Smith 
64447c6ae99SBarry Smith   Level: developer
64547c6ae99SBarry Smith 
6461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMType`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
64747c6ae99SBarry Smith @*/
648d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroy(DM *dm)
649d71ae5a4SJacob Faibussowitsch {
6506eb26441SStefano Zampini   PetscInt cnt;
65147c6ae99SBarry Smith 
65247c6ae99SBarry Smith   PetscFunctionBegin;
6533ba16761SJacob Faibussowitsch   if (!*dm) PetscFunctionReturn(PETSC_SUCCESS);
654f4f49eeaSPierre Jolivet   PetscValidHeaderSpecific(*dm, DM_CLASSID, 1);
65587e657c6SBarry Smith 
65688bdff64SToby Isaac   /* count all non-cyclic references in the doubly-linked list of coarse<->fine meshes */
65762e5d2d2SJDBetteridge   PetscCall(DMCountNonCyclicReferences_Internal(*dm, PETSC_TRUE, PETSC_TRUE, &cnt));
658f4f49eeaSPierre Jolivet   --((PetscObject)*dm)->refct;
6599371c9d4SSatish Balay   if (--cnt > 0) {
6609371c9d4SSatish Balay     *dm = NULL;
6613ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
6629371c9d4SSatish Balay   }
663f4f49eeaSPierre Jolivet   if (((PetscObject)*dm)->refct < 0) PetscFunctionReturn(PETSC_SUCCESS);
664f4f49eeaSPierre Jolivet   ((PetscObject)*dm)->refct = 0;
6656eb26441SStefano Zampini 
6669566063dSJacob Faibussowitsch   PetscCall(DMClearGlobalVectors(*dm));
6679566063dSJacob Faibussowitsch   PetscCall(DMClearLocalVectors(*dm));
668974ca4ecSStefano Zampini   PetscCall(DMClearNamedGlobalVectors(*dm));
669974ca4ecSStefano Zampini   PetscCall(DMClearNamedLocalVectors(*dm));
6702348bcf4SPeter Brune 
671b17ce1afSJed Brown   /* Destroy the list of hooks */
672c833c3b5SJed Brown   {
673c833c3b5SJed Brown     DMCoarsenHookLink link, next;
674b17ce1afSJed Brown     for (link = (*dm)->coarsenhook; link; link = next) {
675b17ce1afSJed Brown       next = link->next;
6769566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
677b17ce1afSJed Brown     }
6780298fd71SBarry Smith     (*dm)->coarsenhook = NULL;
679c833c3b5SJed Brown   }
680c833c3b5SJed Brown   {
681c833c3b5SJed Brown     DMRefineHookLink link, next;
682c833c3b5SJed Brown     for (link = (*dm)->refinehook; link; link = next) {
683c833c3b5SJed Brown       next = link->next;
6849566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
685c833c3b5SJed Brown     }
6860298fd71SBarry Smith     (*dm)->refinehook = NULL;
687c833c3b5SJed Brown   }
688be081cd6SPeter Brune   {
689be081cd6SPeter Brune     DMSubDomainHookLink link, next;
690be081cd6SPeter Brune     for (link = (*dm)->subdomainhook; link; link = next) {
691be081cd6SPeter Brune       next = link->next;
6929566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
693be081cd6SPeter Brune     }
6940298fd71SBarry Smith     (*dm)->subdomainhook = NULL;
695be081cd6SPeter Brune   }
696baf369e7SPeter Brune   {
697baf369e7SPeter Brune     DMGlobalToLocalHookLink link, next;
698baf369e7SPeter Brune     for (link = (*dm)->gtolhook; link; link = next) {
699baf369e7SPeter Brune       next = link->next;
7009566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
701baf369e7SPeter Brune     }
7020298fd71SBarry Smith     (*dm)->gtolhook = NULL;
703baf369e7SPeter Brune   }
704d4d07f1eSToby Isaac   {
705d4d07f1eSToby Isaac     DMLocalToGlobalHookLink link, next;
706d4d07f1eSToby Isaac     for (link = (*dm)->ltoghook; link; link = next) {
707d4d07f1eSToby Isaac       next = link->next;
7089566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
709d4d07f1eSToby Isaac     }
710d4d07f1eSToby Isaac     (*dm)->ltoghook = NULL;
711d4d07f1eSToby Isaac   }
712aa1993deSMatthew G Knepley   /* Destroy the work arrays */
713aa1993deSMatthew G Knepley   {
714aa1993deSMatthew G Knepley     DMWorkLink link, next;
715835f2295SStefano Zampini     PetscCheck(!(*dm)->workout, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Work array still checked out %p %p", (void *)(*dm)->workout, (*dm)->workout->mem);
716aa1993deSMatthew G Knepley     for (link = (*dm)->workin; link; link = next) {
717aa1993deSMatthew G Knepley       next = link->next;
7189566063dSJacob Faibussowitsch       PetscCall(PetscFree(link->mem));
7199566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
720aa1993deSMatthew G Knepley     }
7210298fd71SBarry Smith     (*dm)->workin = NULL;
722aa1993deSMatthew G Knepley   }
723c58f1c22SToby Isaac   /* destroy the labels */
7249566063dSJacob Faibussowitsch   PetscCall(DMDestroyLabelLinkList_Internal(*dm));
725f4cdcedcSVaclav Hapla   /* destroy the fields */
7269566063dSJacob Faibussowitsch   PetscCall(DMClearFields(*dm));
727f4cdcedcSVaclav Hapla   /* destroy the boundaries */
728e6f8dbb6SToby Isaac   {
729e6f8dbb6SToby Isaac     DMBoundary next = (*dm)->boundary;
730e6f8dbb6SToby Isaac     while (next) {
731e6f8dbb6SToby Isaac       DMBoundary b = next;
732e6f8dbb6SToby Isaac 
733e6f8dbb6SToby Isaac       next = b->next;
7349566063dSJacob Faibussowitsch       PetscCall(PetscFree(b));
735e6f8dbb6SToby Isaac     }
736e6f8dbb6SToby Isaac   }
737b17ce1afSJed Brown 
7389566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&(*dm)->dmksp));
7399566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&(*dm)->dmsnes));
7409566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&(*dm)->dmts));
74152536dc3SBarry Smith 
74248a46eb9SPierre Jolivet   if ((*dm)->ctx && (*dm)->ctxdestroy) PetscCall((*(*dm)->ctxdestroy)(&(*dm)->ctx));
7439566063dSJacob Faibussowitsch   PetscCall(MatFDColoringDestroy(&(*dm)->fd));
7449566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&(*dm)->ltogmap));
7459566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->vectype));
7469566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->mattype));
74788ed4aceSMatthew G Knepley 
7489566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&(*dm)->localSection));
7499566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&(*dm)->globalSection));
750adc21957SMatthew G. Knepley   PetscCall(PetscFree((*dm)->reorderSectionType));
7519566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&(*dm)->map));
7529566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&(*dm)->defaultConstraint.section));
7539566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&(*dm)->defaultConstraint.mat));
7549566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&(*dm)->sf));
7559566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&(*dm)->sectionSF));
75648a46eb9SPierre Jolivet   if ((*dm)->sfNatural) PetscCall(PetscSFDestroy(&(*dm)->sfNatural));
7579566063dSJacob Faibussowitsch   PetscCall(PetscObjectDereference((PetscObject)(*dm)->sfMigration));
758e4d5475eSStefano Zampini   PetscCall(DMClearAuxiliaryVec(*dm));
7599566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxDestroy(&(*dm)->auxData));
76048a46eb9SPierre Jolivet   if ((*dm)->coarseMesh && (*dm)->coarseMesh->fineMesh == *dm) PetscCall(DMSetFineDM((*dm)->coarseMesh, NULL));
7616eb26441SStefano Zampini 
7629566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->coarseMesh));
76348a46eb9SPierre Jolivet   if ((*dm)->fineMesh && (*dm)->fineMesh->coarseMesh == *dm) PetscCall(DMSetCoarseDM((*dm)->fineMesh, NULL));
7649566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->fineMesh));
7654fb89dddSMatthew G. Knepley   PetscCall(PetscFree((*dm)->Lstart));
7669566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->L));
7679566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->maxCell));
7686858538eSMatthew G. Knepley   PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[0]));
7696858538eSMatthew G. Knepley   PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[1]));
7709566063dSJacob Faibussowitsch   if ((*dm)->transformDestroy) PetscCall((*(*dm)->transformDestroy)(*dm, (*dm)->transformCtx));
7719566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->transformDM));
7729566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&(*dm)->transform));
773ddedc8f6SJames Wright   for (PetscInt i = 0; i < (*dm)->periodic.num_affines; i++) {
774ddedc8f6SJames Wright     PetscCall(VecScatterDestroy(&(*dm)->periodic.affine_to_local[i]));
775ddedc8f6SJames Wright     PetscCall(VecDestroy(&(*dm)->periodic.affine[i]));
776ddedc8f6SJames Wright   }
777ddedc8f6SJames Wright   if ((*dm)->periodic.num_affines > 0) PetscCall(PetscFree2((*dm)->periodic.affine_to_local, (*dm)->periodic.affine));
7786636e97aSMatthew G Knepley 
7799566063dSJacob Faibussowitsch   PetscCall(DMClearDS(*dm));
7809566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->dmBC));
781e04113cfSBarry Smith   /* if memory was published with SAWs then destroy it */
7829566063dSJacob Faibussowitsch   PetscCall(PetscObjectSAWsViewOff((PetscObject)*dm));
783732e2eb9SMatthew G Knepley 
784213acdd3SPierre Jolivet   PetscTryTypeMethod(*dm, destroy);
7859566063dSJacob Faibussowitsch   PetscCall(DMMonitorCancel(*dm));
786d2b2dc1eSMatthew G. Knepley   PetscCall(DMCeedDestroy(&(*dm)->dmceed));
787f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED
7889566063dSJacob Faibussowitsch   PetscCallCEED(CeedElemRestrictionDestroy(&(*dm)->ceedERestrict));
7899566063dSJacob Faibussowitsch   PetscCallCEED(CeedDestroy(&(*dm)->ceed));
790f918ec44SMatthew G. Knepley #endif
791435a35e8SMatthew G Knepley   /* We do not destroy (*dm)->data here so that we can reference count backend objects */
7929566063dSJacob Faibussowitsch   PetscCall(PetscHeaderDestroy(dm));
7933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
79447c6ae99SBarry Smith }
79547c6ae99SBarry Smith 
796d7bf68aeSBarry Smith /*@
797bb7acecfSBarry Smith   DMSetUp - sets up the data structures inside a `DM` object
798d7bf68aeSBarry Smith 
79920f4b53cSBarry Smith   Collective
800d7bf68aeSBarry Smith 
801d7bf68aeSBarry Smith   Input Parameter:
802bb7acecfSBarry Smith . dm - the `DM` object to setup
803d7bf68aeSBarry Smith 
804bb7acecfSBarry Smith   Level: intermediate
805d7bf68aeSBarry Smith 
806bb7acecfSBarry Smith   Note:
807bb7acecfSBarry Smith   This is usually called after various parameter setting operations and `DMSetFromOptions()` are called on the `DM`
808bb7acecfSBarry Smith 
8091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
810d7bf68aeSBarry Smith @*/
811d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUp(DM dm)
812d71ae5a4SJacob Faibussowitsch {
813d7bf68aeSBarry Smith   PetscFunctionBegin;
814171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8153ba16761SJacob Faibussowitsch   if (dm->setupcalled) PetscFunctionReturn(PETSC_SUCCESS);
816dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, setup);
8178387afaaSJed Brown   dm->setupcalled = PETSC_TRUE;
8183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
819d7bf68aeSBarry Smith }
820d7bf68aeSBarry Smith 
821d7bf68aeSBarry Smith /*@
822bb7acecfSBarry Smith   DMSetFromOptions - sets parameters in a `DM` from the options database
823d7bf68aeSBarry Smith 
82420f4b53cSBarry Smith   Collective
825d7bf68aeSBarry Smith 
826d7bf68aeSBarry Smith   Input Parameter:
827bb7acecfSBarry Smith . dm - the `DM` object to set options for
828d7bf68aeSBarry Smith 
82920f4b53cSBarry Smith   Options Database Keys:
830bb7acecfSBarry Smith + -dm_preallocate_only                               - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros
831bb7acecfSBarry Smith . -dm_vec_type <type>                                - type of vector to create inside `DM`
832bb7acecfSBarry Smith . -dm_mat_type <type>                                - type of matrix to create inside `DM`
833a4ea9b21SRichard Tran Mills . -dm_is_coloring_type                               - <global or local>
83420f4b53cSBarry Smith . -dm_bind_below <n>                                 - bind (force execution on CPU) for `Vec` and `Mat` objects with local size (number of vector entries or matrix rows) below n; currently only supported for `DMDA`
83522d6dc08SStefano Zampini . -dm_plex_option_phases <ph0_, ph1_, ...>           - List of prefixes for option processing phases
83620f4b53cSBarry Smith . -dm_plex_filename <str>                            - File containing a mesh
8379318fe57SMatthew G. Knepley . -dm_plex_boundary_filename <str>                   - File containing a mesh boundary
838cd7e8a5eSksagiyam . -dm_plex_name <str>                                - Name of the mesh in the file
8395dca41c3SJed Brown . -dm_plex_shape <shape>                             - The domain shape, such as `BOX`, `SPHERE`, etc.
8409318fe57SMatthew G. Knepley . -dm_plex_cell <ct>                                 - Cell shape
8419318fe57SMatthew G. Knepley . -dm_plex_reference_cell_domain <bool>              - Use a reference cell domain
8429318fe57SMatthew G. Knepley . -dm_plex_dim <dim>                                 - Set the topological dimension
843bb7acecfSBarry Smith . -dm_plex_simplex <bool>                            - `PETSC_TRUE` for simplex elements, `PETSC_FALSE` for tensor elements
844bb7acecfSBarry Smith . -dm_plex_interpolate <bool>                        - `PETSC_TRUE` turns on topological interpolation (creating edges and faces)
845b9da1bb3SMatthew G. Knepley . -dm_plex_orient <bool>                             - `PETSC_TRUE` turns on topological orientation (flipping edges and faces)
8469318fe57SMatthew G. Knepley . -dm_plex_scale <sc>                                - Scale factor for mesh coordinates
847be664eb1SMatthew G. Knepley . -dm_coord_remap <bool>                             - Map coordinates using a function
848ac9d17c7SMatthew G. Knepley . -dm_plex_coordinate_dim <dim>                      - Change the coordinate dimension of a mesh (usually given with cdm_ prefix)
849be664eb1SMatthew G. Knepley . -dm_coord_map <mapname>                            - Select a builtin coordinate map
850be664eb1SMatthew G. Knepley . -dm_coord_map_params <p0,p1,p2,...>                - Set coordinate mapping parameters
8519318fe57SMatthew G. Knepley . -dm_plex_box_faces <m,n,p>                         - Number of faces along each dimension
8529318fe57SMatthew G. Knepley . -dm_plex_box_lower <x,y,z>                         - Specify lower-left-bottom coordinates for the box
8539318fe57SMatthew G. Knepley . -dm_plex_box_upper <x,y,z>                         - Specify upper-right-top coordinates for the box
854bb7acecfSBarry Smith . -dm_plex_box_bd <bx,by,bz>                         - Specify the `DMBoundaryType` for each direction
8559318fe57SMatthew G. Knepley . -dm_plex_sphere_radius <r>                         - The sphere radius
8569318fe57SMatthew G. Knepley . -dm_plex_ball_radius <r>                           - Radius of the ball
8579318fe57SMatthew G. Knepley . -dm_plex_cylinder_bd <bz>                          - Boundary type in the z direction
8589318fe57SMatthew G. Knepley . -dm_plex_cylinder_num_wedges <n>                   - Number of wedges around the cylinder
859bdf63967SMatthew G. Knepley . -dm_plex_reorder <order>                           - Reorder the mesh using the specified algorithm
8609318fe57SMatthew G. Knepley . -dm_refine_pre <n>                                 - The number of refinements before distribution
8619318fe57SMatthew G. Knepley . -dm_refine_uniform_pre <bool>                      - Flag for uniform refinement before distribution
8629318fe57SMatthew G. Knepley . -dm_refine_volume_limit_pre <v>                    - The maximum cell volume after refinement before distribution
8639318fe57SMatthew G. Knepley . -dm_refine <n>                                     - The number of refinements after distribution
864bdf63967SMatthew G. Knepley . -dm_extrude <l>                                    - Activate extrusion and specify the number of layers to extrude
865d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thickness <t>           - The total thickness of extruded layers
866d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_use_tensor <bool>       - Use tensor cells when extruding
867d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_symmetric <bool>        - Extrude layers symmetrically about the surface
868d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_normal <n0,...,nd>      - Specify the extrusion direction
869d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thicknesses <t0,...,tl> - Specify thickness of each layer
870909dfd52SMatthew G. Knepley . -dm_plex_create_fv_ghost_cells                     - Flag to create finite volume ghost cells on the boundary
871909dfd52SMatthew G. Knepley . -dm_plex_fv_ghost_cells_label <name>               - Label name for ghost cells boundary
8729318fe57SMatthew G. Knepley . -dm_distribute <bool>                              - Flag to redistribute a mesh among processes
8739318fe57SMatthew G. Knepley . -dm_distribute_overlap <n>                         - The size of the overlap halo
8749318fe57SMatthew G. Knepley . -dm_plex_adj_cone <bool>                           - Set adjacency direction
87520f4b53cSBarry Smith . -dm_plex_adj_closure <bool>                        - Set adjacency size
876d2b2dc1eSMatthew G. Knepley . -dm_plex_use_ceed <bool>                           - Use LibCEED as the FEM backend
87720f4b53cSBarry Smith . -dm_plex_check_symmetry                            - Check that the adjacency information in the mesh is symmetric - `DMPlexCheckSymmetry()`
878bb7acecfSBarry Smith . -dm_plex_check_skeleton                            - Check that each cell has the correct number of vertices (only for homogeneous simplex or tensor meshes) - `DMPlexCheckSkeleton()`
879bb7acecfSBarry Smith . -dm_plex_check_faces                               - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type - `DMPlexCheckFaces()`
880bb7acecfSBarry Smith . -dm_plex_check_geometry                            - Check that cells have positive volume - `DMPlexCheckGeometry()`
881bb7acecfSBarry Smith . -dm_plex_check_pointsf                             - Check some necessary conditions for `PointSF` - `DMPlexCheckPointSF()`
882bb7acecfSBarry Smith . -dm_plex_check_interface_cones                     - Check points on inter-partition interfaces have conforming order of cone points - `DMPlexCheckInterfaceCones()`
883384a6580SVaclav Hapla - -dm_plex_check_all                                 - Perform all the checks above
884d7bf68aeSBarry Smith 
88595eb5ee5SVaclav Hapla   Level: intermediate
88695eb5ee5SVaclav Hapla 
8878e704042SBarry Smith   Note:
8888e704042SBarry Smith   For some `DMType` such as `DMDA` this cannot be called after `DMSetUp()` has been called.
8898e704042SBarry Smith 
8901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
891bb7acecfSBarry Smith          `DMPlexCheckSymmetry()`, `DMPlexCheckSkeleton()`, `DMPlexCheckFaces()`, `DMPlexCheckGeometry()`, `DMPlexCheckPointSF()`, `DMPlexCheckInterfaceCones()`,
8928e704042SBarry Smith          `DMSetOptionsPrefix()`, `DMType`, `DMPLEX`, `DMDA`, `DMSetUp()`
893d7bf68aeSBarry Smith @*/
894d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFromOptions(DM dm)
895d71ae5a4SJacob Faibussowitsch {
8967781c08eSBarry Smith   char      typeName[256];
897ca266f36SBarry Smith   PetscBool flg;
898d7bf68aeSBarry Smith 
899d7bf68aeSBarry Smith   PetscFunctionBegin;
900171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
90149be4549SMatthew G. Knepley   dm->setfromoptionscalled = PETSC_TRUE;
9029566063dSJacob Faibussowitsch   if (dm->sf) PetscCall(PetscSFSetFromOptions(dm->sf));
9039566063dSJacob Faibussowitsch   if (dm->sectionSF) PetscCall(PetscSFSetFromOptions(dm->sectionSF));
904dd4c3f67SMatthew G. Knepley   if (dm->coordinates[0].dm) PetscCall(DMSetFromOptions(dm->coordinates[0].dm));
905d0609cedSBarry Smith   PetscObjectOptionsBegin((PetscObject)dm);
9069566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-dm_preallocate_only", "only preallocate matrix, but do not set column indices", "DMSetMatrixPreallocateOnly", dm->prealloc_only, &dm->prealloc_only, NULL));
9079566063dSJacob Faibussowitsch   PetscCall(PetscOptionsFList("-dm_vec_type", "Vector type used for created vectors", "DMSetVecType", VecList, dm->vectype, typeName, 256, &flg));
9081baa6e33SBarry Smith   if (flg) PetscCall(DMSetVecType(dm, typeName));
9099566063dSJacob Faibussowitsch   PetscCall(PetscOptionsFList("-dm_mat_type", "Matrix type used for created matrices", "DMSetMatType", MatList, dm->mattype ? dm->mattype : typeName, typeName, sizeof(typeName), &flg));
9101baa6e33SBarry Smith   if (flg) PetscCall(DMSetMatType(dm, typeName));
911863027abSJed Brown   PetscCall(PetscOptionsEnum("-dm_blocking_type", "Topological point or field node blocking", "DMSetBlockingType", DMBlockingTypes, (PetscEnum)dm->blocking_type, (PetscEnum *)&dm->blocking_type, NULL));
9129566063dSJacob Faibussowitsch   PetscCall(PetscOptionsEnum("-dm_is_coloring_type", "Global or local coloring of Jacobian", "DMSetISColoringType", ISColoringTypes, (PetscEnum)dm->coloringtype, (PetscEnum *)&dm->coloringtype, NULL));
9139566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt("-dm_bind_below", "Set the size threshold (in entries) below which the Vec is bound to the CPU", "VecBindToCPU", dm->bind_below, &dm->bind_below, &flg));
914eb9d3e4dSMatthew G. Knepley   PetscCall(PetscOptionsBool("-dm_ignore_perm_output", "Ignore the local section permutation on output", "DMGetOutputDM", dm->ignorePermOutput, &dm->ignorePermOutput, NULL));
915dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, setfromoptions, PetscOptionsObject);
916f9ba7244SBarry Smith   /* process any options handlers added with PetscObjectAddOptionsHandler() */
917dbbe0bcdSBarry Smith   PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)dm, PetscOptionsObject));
918d0609cedSBarry Smith   PetscOptionsEnd();
9193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
920d7bf68aeSBarry Smith }
921d7bf68aeSBarry Smith 
922ffeef943SBarry Smith /*@
923bb7acecfSBarry Smith   DMViewFromOptions - View a `DM` in a particular way based on a request in the options database
924fe2efc57SMark 
92520f4b53cSBarry Smith   Collective
926fe2efc57SMark 
927fe2efc57SMark   Input Parameters:
928bb7acecfSBarry Smith + dm   - the `DM` object
929ce78bad3SBarry Smith . obj  - optional object that provides the prefix for the options database (if `NULL` then the prefix in `obj` is used)
93060225df5SJacob Faibussowitsch - name - option string that is used to activate viewing
931fe2efc57SMark 
932fe2efc57SMark   Level: intermediate
933bb7acecfSBarry Smith 
934bb7acecfSBarry Smith   Note:
935bb7acecfSBarry Smith   See `PetscObjectViewFromOptions()` for a list of values that can be provided in the options database to determine how the `DM` is viewed
936bb7acecfSBarry Smith 
93760225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `PetscObjectViewFromOptions()`, `DMCreate()`
938fe2efc57SMark @*/
939ce78bad3SBarry Smith PetscErrorCode DMViewFromOptions(DM dm, PeOp PetscObject obj, const char name[])
940d71ae5a4SJacob Faibussowitsch {
941fe2efc57SMark   PetscFunctionBegin;
942fe2efc57SMark   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9439566063dSJacob Faibussowitsch   PetscCall(PetscObjectViewFromOptions((PetscObject)dm, obj, name));
9443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
945fe2efc57SMark }
946fe2efc57SMark 
947ffeef943SBarry Smith /*@
948bb7acecfSBarry Smith   DMView - Views a `DM`. Depending on the `PetscViewer` and its `PetscViewerFormat` it may print some ASCII information about the `DM` to the screen or a file or
949bb7acecfSBarry Smith   save the `DM` in a binary file to be loaded later or create a visualization of the `DM`
95047c6ae99SBarry Smith 
95120f4b53cSBarry Smith   Collective
95247c6ae99SBarry Smith 
953d8d19677SJose E. Roman   Input Parameters:
954bb7acecfSBarry Smith + dm - the `DM` object to view
95547c6ae99SBarry Smith - v  - the viewer
95647c6ae99SBarry Smith 
957c8a418c4SMatthew G. Knepley   Options Database Keys:
958c8a418c4SMatthew G. Knepley + -view_pyvista_warp <f>                 - Warps the mesh by the active scalar with factor f
959c8a418c4SMatthew G. Knepley - -view_pyvista_clip <xl,xu,yl,yu,zl,zu> - Defines the clipping box
960c8a418c4SMatthew G. Knepley 
96120f4b53cSBarry Smith   Level: beginner
96220f4b53cSBarry Smith 
96349c89c76SBlaise Bourdin   Notes:
96449c89c76SBlaise Bourdin 
96549c89c76SBlaise Bourdin   `PetscViewer` = `PETSCVIEWERHDF5` i.e. HDF5 format can be used with `PETSC_VIEWER_HDF5_PETSC` as the `PetscViewerFormat` to save multiple `DMPLEX`
966bb7acecfSBarry Smith   meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()`
967bb7acecfSBarry Smith   before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object.
968cd7e8a5eSksagiyam 
96949c89c76SBlaise Bourdin   `PetscViewer` = `PETSCVIEWEREXODUSII` i.e. ExodusII format assumes that element blocks (mapped to "Cell sets" labels)
97049c89c76SBlaise Bourdin   consists of sequentially numbered cells.
97149c89c76SBlaise Bourdin 
97249c89c76SBlaise Bourdin   If `dm` has been distributed, only the part of the `DM` on MPI rank 0 (including "ghost" cells and vertices) will be written.
97349c89c76SBlaise Bourdin 
974c8a418c4SMatthew G. Knepley   Only TRI, TET, QUAD, and HEX cells are supported in ExodusII.
97549c89c76SBlaise Bourdin 
97649c89c76SBlaise Bourdin   `DMPLEX` only represents geometry while most post-processing software expect that a mesh also provides information on the discretization space. This function assumes that the file represents Lagrange finite elements of order 1 or 2.
97749c89c76SBlaise Bourdin   The order of the mesh shall be set using `PetscViewerExodusIISetOrder()`
97849c89c76SBlaise Bourdin 
979d7c1f440SPierre Jolivet   Variable names can be set and queried using `PetscViewerExodusII[Set/Get][Nodal/Zonal]VariableNames[s]`.
98049c89c76SBlaise Bourdin 
9811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewer`, `PetscViewerFormat`, `PetscViewerSetFormat()`, `DMDestroy()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMLoad()`, `PetscObjectSetName()`
98247c6ae99SBarry Smith @*/
983d71ae5a4SJacob Faibussowitsch PetscErrorCode DMView(DM dm, PetscViewer v)
984d71ae5a4SJacob Faibussowitsch {
98532c0f0efSBarry Smith   PetscBool         isbinary;
98676a8abe0SBarry Smith   PetscMPIInt       size;
98776a8abe0SBarry Smith   PetscViewerFormat format;
98847c6ae99SBarry Smith 
98947c6ae99SBarry Smith   PetscFunctionBegin;
990171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
99148a46eb9SPierre Jolivet   if (!v) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &v));
992b1b135c8SBarry Smith   PetscValidHeaderSpecific(v, PETSC_VIEWER_CLASSID, 2);
99374903a4fSStefano Zampini   /* Ideally, we would like to have this test on.
99474903a4fSStefano Zampini      However, it currently breaks socket viz via GLVis.
99574903a4fSStefano Zampini      During DMView(parallel_mesh,glvis_viewer), each
99674903a4fSStefano Zampini      process opens a sequential ASCII socket to visualize
99774903a4fSStefano Zampini      the local mesh, and PetscObjectView(dm,local_socket)
99874903a4fSStefano Zampini      is internally called inside VecView_GLVis, incurring
99974903a4fSStefano Zampini      in an error here */
100074903a4fSStefano Zampini   /* PetscCheckSameComm(dm,1,v,2); */
10019566063dSJacob Faibussowitsch   PetscCall(PetscViewerCheckWritable(v));
1002b1b135c8SBarry Smith 
100342d0c57aSJames Wright   PetscCall(PetscLogEventBegin(DM_View, v, 0, 0, 0));
10049566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(v, &format));
10059566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
10063ba16761SJacob Faibussowitsch   if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(PETSC_SUCCESS);
10079566063dSJacob Faibussowitsch   PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)dm, v));
10089566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)v, PETSCVIEWERBINARY, &isbinary));
100932c0f0efSBarry Smith   if (isbinary) {
101055849f57SBarry Smith     PetscInt classid = DM_FILE_CLASSID;
101132c0f0efSBarry Smith     char     type[256];
101232c0f0efSBarry Smith 
10139566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryWrite(v, &classid, 1, PETSC_INT));
1014c6a7a370SJeremy L Thompson     PetscCall(PetscStrncpy(type, ((PetscObject)dm)->type_name, sizeof(type)));
10159566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryWrite(v, type, 256, PETSC_CHAR));
101632c0f0efSBarry Smith   }
1017dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, view, v);
101842d0c57aSJames Wright   PetscCall(PetscLogEventEnd(DM_View, v, 0, 0, 0));
10193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
102047c6ae99SBarry Smith }
102147c6ae99SBarry Smith 
102247c6ae99SBarry Smith /*@
1023bb7acecfSBarry Smith   DMCreateGlobalVector - Creates a global vector from a `DM` object. A global vector is a parallel vector that has no duplicate values shared between MPI ranks,
1024bb7acecfSBarry Smith   that is it has no ghost locations.
102547c6ae99SBarry Smith 
102620f4b53cSBarry Smith   Collective
102747c6ae99SBarry Smith 
102847c6ae99SBarry Smith   Input Parameter:
1029bb7acecfSBarry Smith . dm - the `DM` object
103047c6ae99SBarry Smith 
103147c6ae99SBarry Smith   Output Parameter:
103247c6ae99SBarry Smith . vec - the global vector
103347c6ae99SBarry Smith 
1034073dac72SJed Brown   Level: beginner
103547c6ae99SBarry Smith 
10361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
1037bb7acecfSBarry Smith          `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()`
103847c6ae99SBarry Smith @*/
1039d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateGlobalVector(DM dm, Vec *vec)
1040d71ae5a4SJacob Faibussowitsch {
104147c6ae99SBarry Smith   PetscFunctionBegin;
1042171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10434f572ea9SToby Isaac   PetscAssertPointer(vec, 2);
1044dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createglobalvector, vec);
104576bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1046c6b011d8SStefano Zampini     DM vdm;
1047c6b011d8SStefano Zampini 
10489566063dSJacob Faibussowitsch     PetscCall(VecGetDM(*vec, &vdm));
10497a8be351SBarry Smith     PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name);
1050c6b011d8SStefano Zampini   }
10513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
105247c6ae99SBarry Smith }
105347c6ae99SBarry Smith 
105447c6ae99SBarry Smith /*@
1055bb7acecfSBarry Smith   DMCreateLocalVector - Creates a local vector from a `DM` object.
105647c6ae99SBarry Smith 
105747c6ae99SBarry Smith   Not Collective
105847c6ae99SBarry Smith 
105947c6ae99SBarry Smith   Input Parameter:
1060bb7acecfSBarry Smith . dm - the `DM` object
106147c6ae99SBarry Smith 
106247c6ae99SBarry Smith   Output Parameter:
106347c6ae99SBarry Smith . vec - the local vector
106447c6ae99SBarry Smith 
1065073dac72SJed Brown   Level: beginner
106647c6ae99SBarry Smith 
106720f4b53cSBarry Smith   Note:
1068bb7acecfSBarry Smith   A local vector usually has ghost locations that contain values that are owned by different MPI ranks. A global vector has no ghost locations.
1069bb7acecfSBarry Smith 
10701cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
1071bb7acecfSBarry Smith          `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()`
107247c6ae99SBarry Smith @*/
1073d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLocalVector(DM dm, Vec *vec)
1074d71ae5a4SJacob Faibussowitsch {
107547c6ae99SBarry Smith   PetscFunctionBegin;
1076171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10774f572ea9SToby Isaac   PetscAssertPointer(vec, 2);
1078dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createlocalvector, vec);
107976bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1080c6b011d8SStefano Zampini     DM vdm;
1081c6b011d8SStefano Zampini 
10829566063dSJacob Faibussowitsch     PetscCall(VecGetDM(*vec, &vdm));
10837a8be351SBarry Smith     PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_LIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name);
1084c6b011d8SStefano Zampini   }
10853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
108647c6ae99SBarry Smith }
108747c6ae99SBarry Smith 
10881411c6eeSJed Brown /*@
1089bb7acecfSBarry Smith   DMGetLocalToGlobalMapping - Accesses the local-to-global mapping in a `DM`.
10901411c6eeSJed Brown 
109120f4b53cSBarry Smith   Collective
10921411c6eeSJed Brown 
10931411c6eeSJed Brown   Input Parameter:
1094bb7acecfSBarry Smith . dm - the `DM` that provides the mapping
10951411c6eeSJed Brown 
10961411c6eeSJed Brown   Output Parameter:
10971411c6eeSJed Brown . ltog - the mapping
10981411c6eeSJed Brown 
1099bb7acecfSBarry Smith   Level: advanced
11001411c6eeSJed Brown 
11011411c6eeSJed Brown   Notes:
1102bb7acecfSBarry Smith   The global to local mapping allows one to set values into the global vector or matrix using `VecSetValuesLocal()` and `MatSetValuesLocal()`
11031411c6eeSJed Brown 
1104bb7acecfSBarry Smith   Vectors obtained with  `DMCreateGlobalVector()` and matrices obtained with `DMCreateMatrix()` already contain the global mapping so you do
1105bb7acecfSBarry Smith   need to use this function with those objects.
1106bb7acecfSBarry Smith 
1107bb7acecfSBarry Smith   This mapping can then be used by `VecSetLocalToGlobalMapping()` or `MatSetLocalToGlobalMapping()`.
1108bb7acecfSBarry Smith 
110960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `VecSetLocalToGlobalMapping()`, `MatSetLocalToGlobalMapping()`,
1110bb7acecfSBarry Smith           `DMCreateMatrix()`
11111411c6eeSJed Brown @*/
1112d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalToGlobalMapping(DM dm, ISLocalToGlobalMapping *ltog)
1113d71ae5a4SJacob Faibussowitsch {
11140be3e97aSMatthew G. Knepley   PetscInt bs = -1, bsLocal[2], bsMinMax[2];
11151411c6eeSJed Brown 
11161411c6eeSJed Brown   PetscFunctionBegin;
11171411c6eeSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11184f572ea9SToby Isaac   PetscAssertPointer(ltog, 2);
11191411c6eeSJed Brown   if (!dm->ltogmap) {
112037d0c07bSMatthew G Knepley     PetscSection section, sectionGlobal;
112137d0c07bSMatthew G Knepley 
11229566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
112337d0c07bSMatthew G Knepley     if (section) {
1124a974ec88SMatthew G. Knepley       const PetscInt *cdofs;
112537d0c07bSMatthew G Knepley       PetscInt       *ltog;
1126ccf3bd66SMatthew G. Knepley       PetscInt        pStart, pEnd, n, p, k, l;
112737d0c07bSMatthew G Knepley 
11289566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalSection(dm, &sectionGlobal));
11299566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
11309566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetStorageSize(section, &n));
11319566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &ltog)); /* We want the local+overlap size */
113237d0c07bSMatthew G Knepley       for (p = pStart, l = 0; p < pEnd; ++p) {
1133e6befd46SJed Brown         PetscInt bdof, cdof, dof, off, c, cind;
113437d0c07bSMatthew G Knepley 
113537d0c07bSMatthew G Knepley         /* Should probably use constrained dofs */
11369566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(section, p, &dof));
11379566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintDof(section, p, &cdof));
11389566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintIndices(section, p, &cdofs));
11399566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(sectionGlobal, p, &off));
11401a7dc684SMatthew G. Knepley         /* If you have dofs, and constraints, and they are unequal, we set the blocksize to 1 */
11411a7dc684SMatthew G. Knepley         bdof = cdof && (dof - cdof) ? 1 : dof;
1142ad540459SPierre Jolivet         if (dof) bs = bs < 0 ? bdof : PetscGCD(bs, bdof);
11435227eafbSStefano Zampini 
1144e6befd46SJed Brown         for (c = 0, cind = 0; c < dof; ++c, ++l) {
11455227eafbSStefano Zampini           if (cind < cdof && c == cdofs[cind]) {
1146e6befd46SJed Brown             ltog[l] = off < 0 ? off - c : -(off + c + 1);
1147e6befd46SJed Brown             cind++;
1148e6befd46SJed Brown           } else {
11495227eafbSStefano Zampini             ltog[l] = (off < 0 ? -(off + 1) : off) + c - cind;
1150e6befd46SJed Brown           }
115137d0c07bSMatthew G Knepley         }
115237d0c07bSMatthew G Knepley       }
1153bff27382SMatthew G. Knepley       /* Must have same blocksize on all procs (some might have no points) */
11541690c2aeSBarry Smith       bsLocal[0] = bs < 0 ? PETSC_INT_MAX : bs;
11559371c9d4SSatish Balay       bsLocal[1] = bs;
11569566063dSJacob Faibussowitsch       PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)dm), bsLocal, bsMinMax));
11579371c9d4SSatish Balay       if (bsMinMax[0] != bsMinMax[1]) {
11589371c9d4SSatish Balay         bs = 1;
11599371c9d4SSatish Balay       } else {
11609371c9d4SSatish Balay         bs = bsMinMax[0];
11619371c9d4SSatish Balay       }
11627591dbb2SMatthew G. Knepley       bs = bs < 0 ? 1 : bs;
11637591dbb2SMatthew G. Knepley       /* Must reduce indices by blocksize */
1164ccf3bd66SMatthew G. Knepley       if (bs > 1) {
1165ca469d19SJed Brown         for (l = 0, k = 0; l < n; l += bs, ++k) {
1166ca469d19SJed Brown           // Integer division of negative values truncates toward zero(!), not toward negative infinity
1167ca469d19SJed Brown           ltog[k] = ltog[l] >= 0 ? ltog[l] / bs : -(-(ltog[l] + 1) / bs + 1);
1168ca469d19SJed Brown         }
1169ccf3bd66SMatthew G. Knepley         n /= bs;
1170ccf3bd66SMatthew G. Knepley       }
11719566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm), bs, n, ltog, PETSC_OWN_POINTER, &dm->ltogmap));
1172dbbe0bcdSBarry Smith     } else PetscUseTypeMethod(dm, getlocaltoglobalmapping);
117337d0c07bSMatthew G Knepley   }
11741411c6eeSJed Brown   *ltog = dm->ltogmap;
11753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11761411c6eeSJed Brown }
11771411c6eeSJed Brown 
11781411c6eeSJed Brown /*@
1179bb7acecfSBarry Smith   DMGetBlockSize - Gets the inherent block size associated with a `DM`
11801411c6eeSJed Brown 
11811411c6eeSJed Brown   Not Collective
11821411c6eeSJed Brown 
11831411c6eeSJed Brown   Input Parameter:
1184bb7acecfSBarry Smith . dm - the `DM` with block structure
11851411c6eeSJed Brown 
11861411c6eeSJed Brown   Output Parameter:
11871411c6eeSJed Brown . bs - the block size, 1 implies no exploitable block structure
11881411c6eeSJed Brown 
11891411c6eeSJed Brown   Level: intermediate
11901411c6eeSJed Brown 
119173ff1848SBarry Smith   Notes:
1192bb7acecfSBarry Smith   This might be the number of degrees of freedom at each grid point for a structured grid.
1193bb7acecfSBarry Smith 
1194bb7acecfSBarry Smith   Complex `DM` that represent multiphysics or staggered grids or mixed-methods do not generally have a single inherent block size, but
1195bb7acecfSBarry Smith   rather different locations in the vectors may have a different block size.
1196bb7acecfSBarry Smith 
11971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISCreateBlock()`, `VecSetBlockSize()`, `MatSetBlockSize()`, `DMGetLocalToGlobalMapping()`
11981411c6eeSJed Brown @*/
1199d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBlockSize(DM dm, PetscInt *bs)
1200d71ae5a4SJacob Faibussowitsch {
12011411c6eeSJed Brown   PetscFunctionBegin;
12021411c6eeSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
12034f572ea9SToby Isaac   PetscAssertPointer(bs, 2);
12047a8be351SBarry Smith   PetscCheck(dm->bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM does not have enough information to provide a block size yet");
12051411c6eeSJed Brown   *bs = dm->bs;
12063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12071411c6eeSJed Brown }
12081411c6eeSJed Brown 
1209ffeef943SBarry Smith /*@
1210bb7acecfSBarry Smith   DMCreateInterpolation - Gets the interpolation matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by
1211bb7acecfSBarry Smith   `DMCreateGlobalVector()` on the coarse `DM` to similar vectors on the fine grid `DM`.
121247c6ae99SBarry Smith 
121320f4b53cSBarry Smith   Collective
121447c6ae99SBarry Smith 
1215d8d19677SJose E. Roman   Input Parameters:
1216bb7acecfSBarry Smith + dmc - the `DM` object
1217bb7acecfSBarry Smith - dmf - the second, finer `DM` object
121847c6ae99SBarry Smith 
1219d8d19677SJose E. Roman   Output Parameters:
122047c6ae99SBarry Smith + mat - the interpolation
1221b6971eaeSBarry Smith - vec - the scaling (optional, pass `NULL` if not needed), see `DMCreateInterpolationScale()`
122247c6ae99SBarry Smith 
122347c6ae99SBarry Smith   Level: developer
122447c6ae99SBarry Smith 
122595452b02SPatrick Sanan   Notes:
1226bb7acecfSBarry Smith   For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by
1227bb7acecfSBarry Smith   DMCoarsen(). The coordinates set into the `DMDA` are completely ignored in computing the interpolation.
1228d52bd9f3SBarry Smith 
1229bb7acecfSBarry Smith   For `DMDA` objects you can use this interpolation (more precisely the interpolation from the `DMGetCoordinateDM()`) to interpolate the mesh coordinate
1230bb7acecfSBarry Smith   vectors EXCEPT in the periodic case where it does not make sense since the coordinate vectors are not periodic.
123185afcc9aSBarry Smith 
12321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolationScale()`
123347c6ae99SBarry Smith @*/
1234d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolation(DM dmc, DM dmf, Mat *mat, Vec *vec)
1235d71ae5a4SJacob Faibussowitsch {
123647c6ae99SBarry Smith   PetscFunctionBegin;
1237a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
1238a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
12394f572ea9SToby Isaac   PetscAssertPointer(mat, 3);
12409566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateInterpolation, dmc, dmf, 0, 0));
1241dbbe0bcdSBarry Smith   PetscUseTypeMethod(dmc, createinterpolation, dmf, mat, vec);
12429566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateInterpolation, dmc, dmf, 0, 0));
12433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
124447c6ae99SBarry Smith }
124547c6ae99SBarry Smith 
12463ad4599aSBarry Smith /*@
1247a4e35b19SJacob Faibussowitsch   DMCreateInterpolationScale - Forms L = 1/(R*1) where 1 is the vector of all ones, and R is
1248a4e35b19SJacob Faibussowitsch   the transpose of the interpolation between the `DM`.
12492ed6491fSPatrick Sanan 
12502ed6491fSPatrick Sanan   Input Parameters:
1251bb7acecfSBarry Smith + dac - `DM` that defines a coarse mesh
1252bb7acecfSBarry Smith . daf - `DM` that defines a fine mesh
12532ed6491fSPatrick Sanan - mat - the restriction (or interpolation operator) from fine to coarse
12542ed6491fSPatrick Sanan 
12552ed6491fSPatrick Sanan   Output Parameter:
12562ed6491fSPatrick Sanan . scale - the scaled vector
12572ed6491fSPatrick Sanan 
1258bb7acecfSBarry Smith   Level: advanced
12592ed6491fSPatrick Sanan 
126073ff1848SBarry Smith   Note:
1261a4e35b19SJacob Faibussowitsch   xcoarse = diag(L)*R*xfine preserves scale and is thus suitable for state (versus residual)
1262a4e35b19SJacob Faibussowitsch   restriction. In other words xcoarse is the coarse representation of xfine.
1263a4e35b19SJacob Faibussowitsch 
126473ff1848SBarry Smith   Developer Note:
1265bb7acecfSBarry Smith   If the fine-scale `DMDA` has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()`
1266e9c74fd6SRichard Tran Mills   on the restriction/interpolation operator to set the bindingpropagates flag to true.
1267e9c74fd6SRichard Tran Mills 
126860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatRestrict()`, `MatInterpolate()`, `DMCreateInterpolation()`, `DMCreateRestriction()`, `DMCreateGlobalVector()`
12692ed6491fSPatrick Sanan @*/
1270d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolationScale(DM dac, DM daf, Mat mat, Vec *scale)
1271d71ae5a4SJacob Faibussowitsch {
12722ed6491fSPatrick Sanan   Vec         fine;
12732ed6491fSPatrick Sanan   PetscScalar one = 1.0;
12749704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA)
1275e9c74fd6SRichard Tran Mills   PetscBool bindingpropagates, isbound;
12769704db99SRichard Tran Mills #endif
12772ed6491fSPatrick Sanan 
12782ed6491fSPatrick Sanan   PetscFunctionBegin;
12799566063dSJacob Faibussowitsch   PetscCall(DMCreateGlobalVector(daf, &fine));
12809566063dSJacob Faibussowitsch   PetscCall(DMCreateGlobalVector(dac, scale));
12819566063dSJacob Faibussowitsch   PetscCall(VecSet(fine, one));
12829704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA)
12839704db99SRichard Tran Mills   /* If the 'fine' Vec is bound to the CPU, it makes sense to bind 'mat' as well.
12849704db99SRichard Tran Mills    * Note that we only do this for the CUDA case, right now, but if we add support for MatMultTranspose() via ViennaCL,
12859704db99SRichard Tran Mills    * we'll need to do it for that case, too.*/
12869566063dSJacob Faibussowitsch   PetscCall(VecGetBindingPropagates(fine, &bindingpropagates));
1287e9c74fd6SRichard Tran Mills   if (bindingpropagates) {
12889566063dSJacob Faibussowitsch     PetscCall(MatSetBindingPropagates(mat, PETSC_TRUE));
12899566063dSJacob Faibussowitsch     PetscCall(VecBoundToCPU(fine, &isbound));
12909566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(mat, isbound));
129183aa49f4SRichard Tran Mills   }
12929704db99SRichard Tran Mills #endif
12939566063dSJacob Faibussowitsch   PetscCall(MatRestrict(mat, fine, *scale));
12949566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&fine));
12959566063dSJacob Faibussowitsch   PetscCall(VecReciprocal(*scale));
12963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12972ed6491fSPatrick Sanan }
12982ed6491fSPatrick Sanan 
12992ed6491fSPatrick Sanan /*@
1300bb7acecfSBarry Smith   DMCreateRestriction - Gets restriction matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by
1301bb7acecfSBarry Smith   `DMCreateGlobalVector()` on the fine `DM` to similar vectors on the coarse grid `DM`.
13023ad4599aSBarry Smith 
130320f4b53cSBarry Smith   Collective
13043ad4599aSBarry Smith 
1305d8d19677SJose E. Roman   Input Parameters:
1306bb7acecfSBarry Smith + dmc - the `DM` object
1307bb7acecfSBarry Smith - dmf - the second, finer `DM` object
13083ad4599aSBarry Smith 
13093ad4599aSBarry Smith   Output Parameter:
13103ad4599aSBarry Smith . mat - the restriction
13113ad4599aSBarry Smith 
13123ad4599aSBarry Smith   Level: developer
13133ad4599aSBarry Smith 
1314bb7acecfSBarry Smith   Note:
1315bb7acecfSBarry Smith   This only works for `DMSTAG`. For many situations either the transpose of the operator obtained with `DMCreateInterpolation()` or that
1316bb7acecfSBarry Smith   matrix multiplied by the vector obtained with `DMCreateInterpolationScale()` provides the desired object.
13173ad4599aSBarry Smith 
13181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRestrict()`, `DMInterpolate()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateInterpolation()`
13193ad4599aSBarry Smith @*/
1320d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateRestriction(DM dmc, DM dmf, Mat *mat)
1321d71ae5a4SJacob Faibussowitsch {
13223ad4599aSBarry Smith   PetscFunctionBegin;
1323a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
1324a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
13254f572ea9SToby Isaac   PetscAssertPointer(mat, 3);
13269566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateRestriction, dmc, dmf, 0, 0));
1327dbbe0bcdSBarry Smith   PetscUseTypeMethod(dmc, createrestriction, dmf, mat);
13289566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateRestriction, dmc, dmf, 0, 0));
13293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13303ad4599aSBarry Smith }
13313ad4599aSBarry Smith 
133247c6ae99SBarry Smith /*@
1333a4e35b19SJacob Faibussowitsch   DMCreateInjection - Gets injection matrix between two `DM` objects.
133447c6ae99SBarry Smith 
133520f4b53cSBarry Smith   Collective
133647c6ae99SBarry Smith 
1337d8d19677SJose E. Roman   Input Parameters:
1338bb7acecfSBarry Smith + dac - the `DM` object
1339bb7acecfSBarry Smith - daf - the second, finer `DM` object
134047c6ae99SBarry Smith 
134147c6ae99SBarry Smith   Output Parameter:
13426dbf9973SLawrence Mitchell . mat - the injection
134347c6ae99SBarry Smith 
134447c6ae99SBarry Smith   Level: developer
134547c6ae99SBarry Smith 
1346a4e35b19SJacob Faibussowitsch   Notes:
1347a4e35b19SJacob Faibussowitsch   This is an operator that applied to a vector obtained with `DMCreateGlobalVector()` on the
1348a4e35b19SJacob Faibussowitsch   fine grid maps the values to a vector on the vector on the coarse `DM` by simply selecting
1349a4e35b19SJacob Faibussowitsch   the values on the coarse grid points. This compares to the operator obtained by
1350a4e35b19SJacob Faibussowitsch   `DMCreateRestriction()` or the transpose of the operator obtained by
1351a4e35b19SJacob Faibussowitsch   `DMCreateInterpolation()` that uses a "local weighted average" of the values around the
1352a4e35b19SJacob Faibussowitsch   coarse grid point as the coarse grid value.
1353a4e35b19SJacob Faibussowitsch 
1354bb7acecfSBarry Smith   For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by
1355bb7acecfSBarry Smith   `DMCoarsen()`. The coordinates set into the `DMDA` are completely ignored in computing the injection.
135685afcc9aSBarry Smith 
13571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateInterpolation()`,
1358bb7acecfSBarry Smith           `DMCreateRestriction()`, `MatRestrict()`, `MatInterpolate()`
135947c6ae99SBarry Smith @*/
1360d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInjection(DM dac, DM daf, Mat *mat)
1361d71ae5a4SJacob Faibussowitsch {
136247c6ae99SBarry Smith   PetscFunctionBegin;
1363a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dac, DM_CLASSID, 1);
1364a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(daf, DM_CLASSID, 2);
13654f572ea9SToby Isaac   PetscAssertPointer(mat, 3);
13669566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateInjection, dac, daf, 0, 0));
1367dbbe0bcdSBarry Smith   PetscUseTypeMethod(dac, createinjection, daf, mat);
13689566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateInjection, dac, daf, 0, 0));
13693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
137047c6ae99SBarry Smith }
137147c6ae99SBarry Smith 
1372b412c318SBarry Smith /*@
1373bb7acecfSBarry Smith   DMCreateMassMatrix - Gets the mass matrix between two `DM` objects, M_ij = \int \phi_i \psi_j where the \phi are Galerkin basis functions for a
1374bb7acecfSBarry Smith   a Galerkin finite element model on the `DM`
1375bd041c0cSMatthew G. Knepley 
137620f4b53cSBarry Smith   Collective
1377bd041c0cSMatthew G. Knepley 
1378d8d19677SJose E. Roman   Input Parameters:
1379bb7acecfSBarry Smith + dmc - the target `DM` object
13808c1c0954SStefano Zampini - dmf - the source `DM` object, can be `NULL`
1381bd041c0cSMatthew G. Knepley 
1382bd041c0cSMatthew G. Knepley   Output Parameter:
1383b4937a87SMatthew G. Knepley . mat - the mass matrix
1384bd041c0cSMatthew G. Knepley 
1385bd041c0cSMatthew G. Knepley   Level: developer
1386bd041c0cSMatthew G. Knepley 
1387bb7acecfSBarry Smith   Notes:
1388bb7acecfSBarry Smith   For `DMPLEX` the finite element model for the `DM` must have been already provided.
1389bb7acecfSBarry Smith 
13908c1c0954SStefano Zampini   if `dmc` is `dmf` or `NULL`, then x^t M x is an approximation to the L2 norm of the vector x which is obtained by `DMCreateGlobalVector()`
1391bb7acecfSBarry Smith 
139242747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrixLumped()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()`
1393bd041c0cSMatthew G. Knepley @*/
1394d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrix(DM dmc, DM dmf, Mat *mat)
1395d71ae5a4SJacob Faibussowitsch {
1396bd041c0cSMatthew G. Knepley   PetscFunctionBegin;
1397b4937a87SMatthew G. Knepley   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
13988c1c0954SStefano Zampini   if (!dmf) dmf = dmc;
1399b4937a87SMatthew G. Knepley   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
14004f572ea9SToby Isaac   PetscAssertPointer(mat, 3);
14018c1c0954SStefano Zampini   PetscCall(PetscLogEventBegin(DM_CreateMassMatrix, dmc, dmf, 0, 0));
1402dbbe0bcdSBarry Smith   PetscUseTypeMethod(dmc, createmassmatrix, dmf, mat);
14038c1c0954SStefano Zampini   PetscCall(PetscLogEventEnd(DM_CreateMassMatrix, dmc, dmf, 0, 0));
14043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1405b4937a87SMatthew G. Knepley }
1406b4937a87SMatthew G. Knepley 
1407b4937a87SMatthew G. Knepley /*@
1408bb7acecfSBarry Smith   DMCreateMassMatrixLumped - Gets the lumped mass matrix for a given `DM`
1409b4937a87SMatthew G. Knepley 
141020f4b53cSBarry Smith   Collective
1411b4937a87SMatthew G. Knepley 
1412b4937a87SMatthew G. Knepley   Input Parameter:
1413bb7acecfSBarry Smith . dm - the `DM` object
1414b4937a87SMatthew G. Knepley 
14157dcfde4dSJose E. Roman   Output Parameters:
14168e9849d2SStefano Zampini + llm - the local lumped mass matrix, which is a diagonal matrix, represented as a vector
14178e9849d2SStefano Zampini - lm  - the global lumped mass matrix, which is a diagonal matrix, represented as a vector
1418b4937a87SMatthew G. Knepley 
1419b4937a87SMatthew G. Knepley   Level: developer
1420b4937a87SMatthew G. Knepley 
1421bb7acecfSBarry Smith   Note:
1422bb7acecfSBarry Smith   See `DMCreateMassMatrix()` for how to create the non-lumped version of the mass matrix.
1423bb7acecfSBarry Smith 
142460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrix()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()`
1425b4937a87SMatthew G. Knepley @*/
14268e9849d2SStefano Zampini PetscErrorCode DMCreateMassMatrixLumped(DM dm, Vec *llm, Vec *lm)
1427d71ae5a4SJacob Faibussowitsch {
1428b4937a87SMatthew G. Knepley   PetscFunctionBegin;
1429b4937a87SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14308e9849d2SStefano Zampini   if (llm) PetscAssertPointer(llm, 2);
14318e9849d2SStefano Zampini   if (lm) PetscAssertPointer(lm, 3);
14328e9849d2SStefano Zampini   if (llm || lm) PetscUseTypeMethod(dm, createmassmatrixlumped, llm, lm);
14333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1434bd041c0cSMatthew G. Knepley }
1435bd041c0cSMatthew G. Knepley 
1436bd041c0cSMatthew G. Knepley /*@
1437bb7acecfSBarry Smith   DMCreateColoring - Gets coloring of a graph associated with the `DM`. Often the graph represents the operator matrix associated with the discretization
1438bb7acecfSBarry Smith   of a PDE on the `DM`.
143947c6ae99SBarry Smith 
144020f4b53cSBarry Smith   Collective
144147c6ae99SBarry Smith 
1442d8d19677SJose E. Roman   Input Parameters:
1443bb7acecfSBarry Smith + dm    - the `DM` object
1444bb7acecfSBarry Smith - ctype - `IS_COLORING_LOCAL` or `IS_COLORING_GLOBAL`
144547c6ae99SBarry Smith 
144647c6ae99SBarry Smith   Output Parameter:
144747c6ae99SBarry Smith . coloring - the coloring
144847c6ae99SBarry Smith 
14491bf8429eSBarry Smith   Level: developer
14501bf8429eSBarry Smith 
1451ec5066bdSBarry Smith   Notes:
1452bb7acecfSBarry Smith   Coloring of matrices can also be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
1453bb7acecfSBarry Smith   matrix comes from (what this function provides). In general using the mesh produces a more optimal coloring (fewer colors).
1454ec5066bdSBarry Smith 
1455bb7acecfSBarry Smith   This produces a coloring with the distance of 2, see `MatSetColoringDistance()` which can be used for efficiently computing Jacobians with `MatFDColoringCreate()`
14561bf8429eSBarry Smith   For `DMDA` in three dimensions with periodic boundary conditions the number of grid points in each dimension must be divisible by 2*stencil_width + 1,
14571bf8429eSBarry Smith   otherwise an error will be generated.
1458ec5066bdSBarry Smith 
14591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISColoring`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatType()`, `MatColoring`, `MatFDColoringCreate()`
1460aab9d709SJed Brown @*/
1461d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateColoring(DM dm, ISColoringType ctype, ISColoring *coloring)
1462d71ae5a4SJacob Faibussowitsch {
146347c6ae99SBarry Smith   PetscFunctionBegin;
1464171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14654f572ea9SToby Isaac   PetscAssertPointer(coloring, 3);
1466dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, getcoloring, ctype, coloring);
14673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
146847c6ae99SBarry Smith }
146947c6ae99SBarry Smith 
1470b412c318SBarry Smith /*@
1471bb7acecfSBarry Smith   DMCreateMatrix - Gets an empty matrix for a `DM` that is most commonly used to store the Jacobian of a discrete PDE operator.
147247c6ae99SBarry Smith 
147320f4b53cSBarry Smith   Collective
147447c6ae99SBarry Smith 
147547c6ae99SBarry Smith   Input Parameter:
1476bb7acecfSBarry Smith . dm - the `DM` object
147747c6ae99SBarry Smith 
147847c6ae99SBarry Smith   Output Parameter:
147947c6ae99SBarry Smith . mat - the empty Jacobian
148047c6ae99SBarry Smith 
148120f4b53cSBarry Smith   Options Database Key:
1482bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros
1483f27dd7c6SMatthew G. Knepley 
148420f4b53cSBarry Smith   Level: beginner
148520f4b53cSBarry Smith 
148695452b02SPatrick Sanan   Notes:
148795452b02SPatrick Sanan   This properly preallocates the number of nonzeros in the sparse matrix so you
148894013140SBarry Smith   do not need to do it yourself.
148994013140SBarry Smith 
149094013140SBarry Smith   By default it also sets the nonzero structure and puts in the zero entries. To prevent setting
1491bb7acecfSBarry Smith   the nonzero pattern call `DMSetMatrixPreallocateOnly()`
149294013140SBarry Smith 
1493bb7acecfSBarry Smith   For `DMDA`, when you call `MatView()` on this matrix it is displayed using the global natural ordering, NOT in the ordering used
149494013140SBarry Smith   internally by PETSc.
149594013140SBarry Smith 
1496bb7acecfSBarry Smith   For `DMDA`, in general it is easiest to use `MatSetValuesStencil()` or `MatSetValuesLocal()` to put values into the matrix because
1497bb7acecfSBarry Smith   `MatSetValues()` requires the indices for the global numbering for the `DMDA` which is complic`ated to compute
149894013140SBarry Smith 
14991cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMSetMatType()`, `DMCreateMassMatrix()`
1500aab9d709SJed Brown @*/
1501d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMatrix(DM dm, Mat *mat)
1502d71ae5a4SJacob Faibussowitsch {
150347c6ae99SBarry Smith   PetscFunctionBegin;
1504171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
15054f572ea9SToby Isaac   PetscAssertPointer(mat, 2);
15069566063dSJacob Faibussowitsch   PetscCall(MatInitializePackage());
15079566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateMatrix, 0, 0, 0, 0));
1508dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, creatematrix, mat);
150976bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1510c6b011d8SStefano Zampini     DM mdm;
1511c6b011d8SStefano Zampini 
15129566063dSJacob Faibussowitsch     PetscCall(MatGetDM(*mat, &mdm));
15137a8be351SBarry Smith     PetscCheck(mdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the matrix", ((PetscObject)dm)->type_name);
1514c6b011d8SStefano Zampini   }
1515e571a35bSMatthew G. Knepley   /* Handle nullspace and near nullspace */
1516e5e52638SMatthew G. Knepley   if (dm->Nf) {
1517e571a35bSMatthew G. Knepley     MatNullSpace nullSpace;
1518649ef022SMatthew Knepley     PetscInt     Nf, f;
1519e571a35bSMatthew G. Knepley 
15209566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
1521649ef022SMatthew Knepley     for (f = 0; f < Nf; ++f) {
1522649ef022SMatthew Knepley       if (dm->nullspaceConstructors[f]) {
15239566063dSJacob Faibussowitsch         PetscCall((*dm->nullspaceConstructors[f])(dm, f, f, &nullSpace));
15249566063dSJacob Faibussowitsch         PetscCall(MatSetNullSpace(*mat, nullSpace));
15259566063dSJacob Faibussowitsch         PetscCall(MatNullSpaceDestroy(&nullSpace));
1526649ef022SMatthew Knepley         break;
1527e571a35bSMatthew G. Knepley       }
1528649ef022SMatthew Knepley     }
1529649ef022SMatthew Knepley     for (f = 0; f < Nf; ++f) {
1530649ef022SMatthew Knepley       if (dm->nearnullspaceConstructors[f]) {
15319566063dSJacob Faibussowitsch         PetscCall((*dm->nearnullspaceConstructors[f])(dm, f, f, &nullSpace));
15329566063dSJacob Faibussowitsch         PetscCall(MatSetNearNullSpace(*mat, nullSpace));
15339566063dSJacob Faibussowitsch         PetscCall(MatNullSpaceDestroy(&nullSpace));
1534e571a35bSMatthew G. Knepley       }
1535e571a35bSMatthew G. Knepley     }
1536e571a35bSMatthew G. Knepley   }
15379566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateMatrix, 0, 0, 0, 0));
15383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
153947c6ae99SBarry Smith }
154047c6ae99SBarry Smith 
1541732e2eb9SMatthew G Knepley /*@
1542a4e35b19SJacob Faibussowitsch   DMSetMatrixPreallocateSkip - When `DMCreateMatrix()` is called the matrix sizes and
1543a4e35b19SJacob Faibussowitsch   `ISLocalToGlobalMapping` will be properly set, but the data structures to store values in the
1544a4e35b19SJacob Faibussowitsch   matrices will not be preallocated.
1545aa0f6e3cSJed Brown 
154620f4b53cSBarry Smith   Logically Collective
1547aa0f6e3cSJed Brown 
1548aa0f6e3cSJed Brown   Input Parameters:
1549bb7acecfSBarry Smith + dm   - the `DM`
1550bb7acecfSBarry Smith - skip - `PETSC_TRUE` to skip preallocation
1551aa0f6e3cSJed Brown 
1552aa0f6e3cSJed Brown   Level: developer
1553aa0f6e3cSJed Brown 
155473ff1848SBarry Smith   Note:
1555a4e35b19SJacob Faibussowitsch   This is most useful to reduce initialization costs when `MatSetPreallocationCOO()` and
1556a4e35b19SJacob Faibussowitsch   `MatSetValuesCOO()` will be used.
1557a4e35b19SJacob Faibussowitsch 
15581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateOnly()`
1559aa0f6e3cSJed Brown @*/
1560d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateSkip(DM dm, PetscBool skip)
1561d71ae5a4SJacob Faibussowitsch {
1562aa0f6e3cSJed Brown   PetscFunctionBegin;
1563aa0f6e3cSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1564aa0f6e3cSJed Brown   dm->prealloc_skip = skip;
15653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1566aa0f6e3cSJed Brown }
1567aa0f6e3cSJed Brown 
1568aa0f6e3cSJed Brown /*@
1569bb7acecfSBarry Smith   DMSetMatrixPreallocateOnly - When `DMCreateMatrix()` is called the matrix will be properly
1570732e2eb9SMatthew G Knepley   preallocated but the nonzero structure and zero values will not be set.
1571732e2eb9SMatthew G Knepley 
157220f4b53cSBarry Smith   Logically Collective
1573732e2eb9SMatthew G Knepley 
1574d8d19677SJose E. Roman   Input Parameters:
1575bb7acecfSBarry Smith + dm   - the `DM`
1576bb7acecfSBarry Smith - only - `PETSC_TRUE` if only want preallocation
1577732e2eb9SMatthew G Knepley 
157820f4b53cSBarry Smith   Options Database Key:
1579bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()`, `DMCreateMassMatrix()`, but do not fill it with zeros
1580f27dd7c6SMatthew G. Knepley 
158120f4b53cSBarry Smith   Level: developer
158220f4b53cSBarry Smith 
15831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateSkip()`
1584732e2eb9SMatthew G Knepley @*/
1585d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateOnly(DM dm, PetscBool only)
1586d71ae5a4SJacob Faibussowitsch {
1587732e2eb9SMatthew G Knepley   PetscFunctionBegin;
1588732e2eb9SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1589732e2eb9SMatthew G Knepley   dm->prealloc_only = only;
15903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1591732e2eb9SMatthew G Knepley }
1592732e2eb9SMatthew G Knepley 
1593b06ff27eSHong Zhang /*@
15940b4b7b1cSBarry Smith   DMSetMatrixStructureOnly - When `DMCreateMatrix()` is called, the matrix nonzero structure will be created
1595bb7acecfSBarry Smith   but the array for numerical values will not be allocated.
1596b06ff27eSHong Zhang 
159720f4b53cSBarry Smith   Logically Collective
1598b06ff27eSHong Zhang 
1599d8d19677SJose E. Roman   Input Parameters:
1600bb7acecfSBarry Smith + dm   - the `DM`
16010b4b7b1cSBarry Smith - only - `PETSC_TRUE` if you only want matrix nonzero structure
1602b06ff27eSHong Zhang 
1603b06ff27eSHong Zhang   Level: developer
1604bb7acecfSBarry Smith 
16051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMSetMatrixPreallocateSkip()`
1606b06ff27eSHong Zhang @*/
1607d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixStructureOnly(DM dm, PetscBool only)
1608d71ae5a4SJacob Faibussowitsch {
1609b06ff27eSHong Zhang   PetscFunctionBegin;
1610b06ff27eSHong Zhang   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1611b06ff27eSHong Zhang   dm->structure_only = only;
16123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1613b06ff27eSHong Zhang }
1614b06ff27eSHong Zhang 
1615863027abSJed Brown /*@
1616863027abSJed Brown   DMSetBlockingType - set the blocking granularity to be used for variable block size `DMCreateMatrix()` is called
1617863027abSJed Brown 
161820f4b53cSBarry Smith   Logically Collective
1619863027abSJed Brown 
1620863027abSJed Brown   Input Parameters:
1621863027abSJed Brown + dm    - the `DM`
1622863027abSJed Brown - btype - block by topological point or field node
1623863027abSJed Brown 
162420f4b53cSBarry Smith   Options Database Key:
16250e762ea3SJed Brown . -dm_blocking_type [topological_point, field_node] - use topological point blocking or field node blocking
1626863027abSJed Brown 
162720f4b53cSBarry Smith   Level: advanced
162820f4b53cSBarry Smith 
16291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()`
1630863027abSJed Brown @*/
1631863027abSJed Brown PetscErrorCode DMSetBlockingType(DM dm, DMBlockingType btype)
1632863027abSJed Brown {
1633863027abSJed Brown   PetscFunctionBegin;
1634863027abSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1635863027abSJed Brown   dm->blocking_type = btype;
16363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1637863027abSJed Brown }
1638863027abSJed Brown 
1639863027abSJed Brown /*@
1640863027abSJed Brown   DMGetBlockingType - get the blocking granularity to be used for variable block size `DMCreateMatrix()` is called
1641863027abSJed Brown 
1642863027abSJed Brown   Not Collective
1643863027abSJed Brown 
16442fe279fdSBarry Smith   Input Parameter:
1645863027abSJed Brown . dm - the `DM`
1646863027abSJed Brown 
16472fe279fdSBarry Smith   Output Parameter:
1648863027abSJed Brown . btype - block by topological point or field node
1649863027abSJed Brown 
1650863027abSJed Brown   Level: advanced
1651863027abSJed Brown 
16521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()`
1653863027abSJed Brown @*/
1654863027abSJed Brown PetscErrorCode DMGetBlockingType(DM dm, DMBlockingType *btype)
1655863027abSJed Brown {
1656863027abSJed Brown   PetscFunctionBegin;
1657863027abSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
16584f572ea9SToby Isaac   PetscAssertPointer(btype, 2);
1659863027abSJed Brown   *btype = dm->blocking_type;
16603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1661863027abSJed Brown }
1662863027abSJed Brown 
1663a89ea682SMatthew G Knepley /*@C
1664bb7acecfSBarry Smith   DMGetWorkArray - Gets a work array guaranteed to be at least the input size, restore with `DMRestoreWorkArray()`
1665a89ea682SMatthew G Knepley 
1666a89ea682SMatthew G Knepley   Not Collective
1667a89ea682SMatthew G Knepley 
1668a89ea682SMatthew G Knepley   Input Parameters:
1669bb7acecfSBarry Smith + dm    - the `DM` object
1670a5b23f4aSJose E. Roman . count - The minimum size
167120f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, or `MPIU_INT`)
1672a89ea682SMatthew G Knepley 
1673a89ea682SMatthew G Knepley   Output Parameter:
167460225df5SJacob Faibussowitsch . mem - the work array
1675a89ea682SMatthew G Knepley 
1676a89ea682SMatthew G Knepley   Level: developer
1677a89ea682SMatthew G Knepley 
167873ff1848SBarry Smith   Notes:
1679da81f932SPierre Jolivet   A `DM` may stash the array between instantiations so using this routine may be more efficient than calling `PetscMalloc()`
1680bb7acecfSBarry Smith 
1681bb7acecfSBarry Smith   The array may contain nonzero values
1682bb7acecfSBarry Smith 
16831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMRestoreWorkArray()`, `PetscMalloc()`
1684a89ea682SMatthew G Knepley @*/
1685d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem)
1686d71ae5a4SJacob Faibussowitsch {
1687aa1993deSMatthew G Knepley   DMWorkLink  link;
168869291d52SBarry Smith   PetscMPIInt dsize;
1689a89ea682SMatthew G Knepley 
1690a89ea682SMatthew G Knepley   PetscFunctionBegin;
1691a89ea682SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
16924f572ea9SToby Isaac   PetscAssertPointer(mem, 4);
1693442f3b32SStefano Zampini   if (!count) {
1694442f3b32SStefano Zampini     *(void **)mem = NULL;
1695442f3b32SStefano Zampini     PetscFunctionReturn(PETSC_SUCCESS);
1696442f3b32SStefano Zampini   }
1697aa1993deSMatthew G Knepley   if (dm->workin) {
1698aa1993deSMatthew G Knepley     link       = dm->workin;
1699aa1993deSMatthew G Knepley     dm->workin = dm->workin->next;
1700aa1993deSMatthew G Knepley   } else {
17014dfa11a4SJacob Faibussowitsch     PetscCall(PetscNew(&link));
1702a89ea682SMatthew G Knepley   }
1703b77fa653SStefano Zampini   /* Avoid MPI_Type_size for most used datatypes
1704b77fa653SStefano Zampini      Get size directly */
1705b77fa653SStefano Zampini   if (dtype == MPIU_INT) dsize = sizeof(PetscInt);
1706b77fa653SStefano Zampini   else if (dtype == MPIU_REAL) dsize = sizeof(PetscReal);
1707b77fa653SStefano Zampini #if defined(PETSC_USE_64BIT_INDICES)
1708b77fa653SStefano Zampini   else if (dtype == MPI_INT) dsize = sizeof(int);
1709b77fa653SStefano Zampini #endif
1710b77fa653SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1711b77fa653SStefano Zampini   else if (dtype == MPIU_SCALAR) dsize = sizeof(PetscScalar);
1712b77fa653SStefano Zampini #endif
1713b77fa653SStefano Zampini   else PetscCallMPI(MPI_Type_size(dtype, &dsize));
1714b77fa653SStefano Zampini 
17155056fcd2SBarry Smith   if (((size_t)dsize * count) > link->bytes) {
17169566063dSJacob Faibussowitsch     PetscCall(PetscFree(link->mem));
17179566063dSJacob Faibussowitsch     PetscCall(PetscMalloc(dsize * count, &link->mem));
1718854ce69bSBarry Smith     link->bytes = dsize * count;
1719aa1993deSMatthew G Knepley   }
1720aa1993deSMatthew G Knepley   link->next    = dm->workout;
1721aa1993deSMatthew G Knepley   dm->workout   = link;
1722aa1993deSMatthew G Knepley   *(void **)mem = link->mem;
17233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1724a89ea682SMatthew G Knepley }
1725a89ea682SMatthew G Knepley 
1726aa1993deSMatthew G Knepley /*@C
1727bb7acecfSBarry Smith   DMRestoreWorkArray - Restores a work array obtained with `DMCreateWorkArray()`
1728aa1993deSMatthew G Knepley 
1729aa1993deSMatthew G Knepley   Not Collective
1730aa1993deSMatthew G Knepley 
1731aa1993deSMatthew G Knepley   Input Parameters:
1732bb7acecfSBarry Smith + dm    - the `DM` object
1733a5b23f4aSJose E. Roman . count - The minimum size
173420f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, `MPIU_INT`
1735aa1993deSMatthew G Knepley 
1736aa1993deSMatthew G Knepley   Output Parameter:
173760225df5SJacob Faibussowitsch . mem - the work array
1738aa1993deSMatthew G Knepley 
1739aa1993deSMatthew G Knepley   Level: developer
1740aa1993deSMatthew G Knepley 
174173ff1848SBarry Smith   Developer Note:
1742bb7acecfSBarry Smith   count and dtype are ignored, they are only needed for `DMGetWorkArray()`
1743147403d9SBarry Smith 
17441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMGetWorkArray()`
1745aa1993deSMatthew G Knepley @*/
1746d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestoreWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem)
1747d71ae5a4SJacob Faibussowitsch {
1748aa1993deSMatthew G Knepley   DMWorkLink *p, link;
1749aa1993deSMatthew G Knepley 
1750aa1993deSMatthew G Knepley   PetscFunctionBegin;
17514f572ea9SToby Isaac   PetscAssertPointer(mem, 4);
1752a4e35b19SJacob Faibussowitsch   (void)count;
1753a4e35b19SJacob Faibussowitsch   (void)dtype;
1754442f3b32SStefano Zampini   if (!*(void **)mem) PetscFunctionReturn(PETSC_SUCCESS);
1755aa1993deSMatthew G Knepley   for (p = &dm->workout; (link = *p); p = &link->next) {
1756aa1993deSMatthew G Knepley     if (link->mem == *(void **)mem) {
1757aa1993deSMatthew G Knepley       *p            = link->next;
1758aa1993deSMatthew G Knepley       link->next    = dm->workin;
1759aa1993deSMatthew G Knepley       dm->workin    = link;
17600298fd71SBarry Smith       *(void **)mem = NULL;
17613ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1762aa1993deSMatthew G Knepley     }
1763aa1993deSMatthew G Knepley   }
1764aa1993deSMatthew G Knepley   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Array was not checked out");
1765aa1993deSMatthew G Knepley }
1766e7c4fc90SDmitry Karpeev 
17678cda7954SMatthew G. Knepley /*@C
1768bb7acecfSBarry Smith   DMSetNullSpaceConstructor - Provide a callback function which constructs the nullspace for a given field, defined with `DMAddField()`, when function spaces
1769bb7acecfSBarry Smith   are joined or split, such as in `DMCreateSubDM()`
17708cda7954SMatthew G. Knepley 
177120f4b53cSBarry Smith   Logically Collective; No Fortran Support
17728cda7954SMatthew G. Knepley 
17738cda7954SMatthew G. Knepley   Input Parameters:
1774bb7acecfSBarry Smith + dm     - The `DM`
17758cda7954SMatthew G. Knepley . field  - The field number for the nullspace
17768cda7954SMatthew G. Knepley - nullsp - A callback to create the nullspace
17778cda7954SMatthew G. Knepley 
177820f4b53cSBarry Smith   Calling sequence of `nullsp`:
1779bb7acecfSBarry Smith + dm        - The present `DM`
1780bb7acecfSBarry Smith . origField - The field number given above, in the original `DM`
1781147403d9SBarry Smith . field     - The field number in dm
1782147403d9SBarry Smith - nullSpace - The nullspace for the given field
17838cda7954SMatthew G. Knepley 
178449762cbcSSatish Balay   Level: intermediate
178549762cbcSSatish Balay 
17861cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
1787147403d9SBarry Smith @*/
1788a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1789d71ae5a4SJacob Faibussowitsch {
1790435a35e8SMatthew G Knepley   PetscFunctionBegin;
1791435a35e8SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
17927a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1793435a35e8SMatthew G Knepley   dm->nullspaceConstructors[field] = nullsp;
17943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1795435a35e8SMatthew G Knepley }
1796435a35e8SMatthew G Knepley 
17978cda7954SMatthew G. Knepley /*@C
1798bb7acecfSBarry Smith   DMGetNullSpaceConstructor - Return the callback function which constructs the nullspace for a given field, defined with `DMAddField()`
17998cda7954SMatthew G. Knepley 
180020f4b53cSBarry Smith   Not Collective; No Fortran Support
18018cda7954SMatthew G. Knepley 
18028cda7954SMatthew G. Knepley   Input Parameters:
1803bb7acecfSBarry Smith + dm    - The `DM`
18048cda7954SMatthew G. Knepley - field - The field number for the nullspace
18058cda7954SMatthew G. Knepley 
18068cda7954SMatthew G. Knepley   Output Parameter:
18078cda7954SMatthew G. Knepley . nullsp - A callback to create the nullspace
18088cda7954SMatthew G. Knepley 
180920f4b53cSBarry Smith   Calling sequence of `nullsp`:
1810147403d9SBarry Smith + dm        - The present DM
1811147403d9SBarry Smith . origField - The field number given above, in the original DM
1812147403d9SBarry Smith . field     - The field number in dm
1813147403d9SBarry Smith - nullSpace - The nullspace for the given field
18148cda7954SMatthew G. Knepley 
181549762cbcSSatish Balay   Level: intermediate
181649762cbcSSatish Balay 
18171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
1818147403d9SBarry Smith @*/
1819a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1820d71ae5a4SJacob Faibussowitsch {
18210a50eb56SMatthew G. Knepley   PetscFunctionBegin;
18220a50eb56SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
18234f572ea9SToby Isaac   PetscAssertPointer(nullsp, 3);
18247a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
18250a50eb56SMatthew G. Knepley   *nullsp = dm->nullspaceConstructors[field];
18263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18270a50eb56SMatthew G. Knepley }
18280a50eb56SMatthew G. Knepley 
18298cda7954SMatthew G. Knepley /*@C
1830bb7acecfSBarry Smith   DMSetNearNullSpaceConstructor - Provide a callback function which constructs the near-nullspace for a given field, defined with `DMAddField()`
18318cda7954SMatthew G. Knepley 
183220f4b53cSBarry Smith   Logically Collective; No Fortran Support
18338cda7954SMatthew G. Knepley 
18348cda7954SMatthew G. Knepley   Input Parameters:
1835bb7acecfSBarry Smith + dm     - The `DM`
18368cda7954SMatthew G. Knepley . field  - The field number for the nullspace
18378cda7954SMatthew G. Knepley - nullsp - A callback to create the near-nullspace
18388cda7954SMatthew G. Knepley 
183920f4b53cSBarry Smith   Calling sequence of `nullsp`:
1840bb7acecfSBarry Smith + dm        - The present `DM`
1841bb7acecfSBarry Smith . origField - The field number given above, in the original `DM`
1842147403d9SBarry Smith . field     - The field number in dm
1843147403d9SBarry Smith - nullSpace - The nullspace for the given field
18448cda7954SMatthew G. Knepley 
184549762cbcSSatish Balay   Level: intermediate
184649762cbcSSatish Balay 
18471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`,
1848bb7acecfSBarry Smith           `MatNullSpace`
1849147403d9SBarry Smith @*/
1850a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1851d71ae5a4SJacob Faibussowitsch {
1852f9d4088aSMatthew G. Knepley   PetscFunctionBegin;
1853f9d4088aSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
18547a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1855f9d4088aSMatthew G. Knepley   dm->nearnullspaceConstructors[field] = nullsp;
18563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1857f9d4088aSMatthew G. Knepley }
1858f9d4088aSMatthew G. Knepley 
18598cda7954SMatthew G. Knepley /*@C
1860bb7acecfSBarry Smith   DMGetNearNullSpaceConstructor - Return the callback function which constructs the near-nullspace for a given field, defined with `DMAddField()`
18618cda7954SMatthew G. Knepley 
186220f4b53cSBarry Smith   Not Collective; No Fortran Support
18638cda7954SMatthew G. Knepley 
18648cda7954SMatthew G. Knepley   Input Parameters:
1865bb7acecfSBarry Smith + dm    - The `DM`
18668cda7954SMatthew G. Knepley - field - The field number for the nullspace
18678cda7954SMatthew G. Knepley 
18688cda7954SMatthew G. Knepley   Output Parameter:
18698cda7954SMatthew G. Knepley . nullsp - A callback to create the near-nullspace
18708cda7954SMatthew G. Knepley 
187120f4b53cSBarry Smith   Calling sequence of `nullsp`:
1872bb7acecfSBarry Smith + dm        - The present `DM`
1873bb7acecfSBarry Smith . origField - The field number given above, in the original `DM`
1874147403d9SBarry Smith . field     - The field number in dm
1875147403d9SBarry Smith - nullSpace - The nullspace for the given field
18768cda7954SMatthew G. Knepley 
187749762cbcSSatish Balay   Level: intermediate
187849762cbcSSatish Balay 
18791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`,
1880bb7acecfSBarry Smith           `MatNullSpace`, `DMCreateSuperDM()`
1881147403d9SBarry Smith @*/
1882a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1883d71ae5a4SJacob Faibussowitsch {
1884f9d4088aSMatthew G. Knepley   PetscFunctionBegin;
1885f9d4088aSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
18864f572ea9SToby Isaac   PetscAssertPointer(nullsp, 3);
18877a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1888f9d4088aSMatthew G. Knepley   *nullsp = dm->nearnullspaceConstructors[field];
18893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1890f9d4088aSMatthew G. Knepley }
1891f9d4088aSMatthew G. Knepley 
18924f3b5142SJed Brown /*@C
1893bb7acecfSBarry Smith   DMCreateFieldIS - Creates a set of `IS` objects with the global indices of dofs for each field defined with `DMAddField()`
18944d343eeaSMatthew G Knepley 
189520f4b53cSBarry Smith   Not Collective; No Fortran Support
18964d343eeaSMatthew G Knepley 
18974d343eeaSMatthew G Knepley   Input Parameter:
1898bb7acecfSBarry Smith . dm - the `DM` object
18994d343eeaSMatthew G Knepley 
19004d343eeaSMatthew G Knepley   Output Parameters:
190120f4b53cSBarry Smith + numFields  - The number of fields (or `NULL` if not requested)
1902ce78bad3SBarry Smith . fieldNames - The name of each field (or `NULL` if not requested)
190320f4b53cSBarry Smith - fields     - The global indices for each field (or `NULL` if not requested)
19044d343eeaSMatthew G Knepley 
19054d343eeaSMatthew G Knepley   Level: intermediate
19064d343eeaSMatthew G Knepley 
1907bb7acecfSBarry Smith   Note:
190873ff1848SBarry Smith   The user is responsible for freeing all requested arrays. In particular, every entry of `fieldNames` should be freed with
190973ff1848SBarry Smith   `PetscFree()`, every entry of `fields` should be destroyed with `ISDestroy()`, and both arrays should be freed with
1910bb7acecfSBarry Smith   `PetscFree()`.
191121c9b008SJed Brown 
191273ff1848SBarry Smith   Developer Note:
1913bb7acecfSBarry Smith   It is not clear why both this function and `DMCreateFieldDecomposition()` exist. Having two seems redundant and confusing. This function should
1914bb7acecfSBarry Smith   likely be removed.
1915bb7acecfSBarry Smith 
19161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
1917bb7acecfSBarry Smith           `DMCreateFieldDecomposition()`
19184d343eeaSMatthew G Knepley @*/
1919ce78bad3SBarry Smith PetscErrorCode DMCreateFieldIS(DM dm, PetscInt *numFields, char ***fieldNames, IS *fields[])
1920d71ae5a4SJacob Faibussowitsch {
192137d0c07bSMatthew G Knepley   PetscSection section, sectionGlobal;
19224d343eeaSMatthew G Knepley 
19234d343eeaSMatthew G Knepley   PetscFunctionBegin;
19244d343eeaSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
192569ca1f37SDmitry Karpeev   if (numFields) {
19264f572ea9SToby Isaac     PetscAssertPointer(numFields, 2);
192769ca1f37SDmitry Karpeev     *numFields = 0;
192869ca1f37SDmitry Karpeev   }
192937d0c07bSMatthew G Knepley   if (fieldNames) {
19304f572ea9SToby Isaac     PetscAssertPointer(fieldNames, 3);
19310298fd71SBarry Smith     *fieldNames = NULL;
193269ca1f37SDmitry Karpeev   }
193369ca1f37SDmitry Karpeev   if (fields) {
19344f572ea9SToby Isaac     PetscAssertPointer(fields, 4);
19350298fd71SBarry Smith     *fields = NULL;
193669ca1f37SDmitry Karpeev   }
19379566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
193837d0c07bSMatthew G Knepley   if (section) {
19393a544194SStefano Zampini     PetscInt *fieldSizes, *fieldNc, **fieldIndices;
194037d0c07bSMatthew G Knepley     PetscInt  nF, f, pStart, pEnd, p;
194137d0c07bSMatthew G Knepley 
19429566063dSJacob Faibussowitsch     PetscCall(DMGetGlobalSection(dm, &sectionGlobal));
19439566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetNumFields(section, &nF));
19449566063dSJacob Faibussowitsch     PetscCall(PetscMalloc3(nF, &fieldSizes, nF, &fieldNc, nF, &fieldIndices));
19459566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd));
194637d0c07bSMatthew G Knepley     for (f = 0; f < nF; ++f) {
194737d0c07bSMatthew G Knepley       fieldSizes[f] = 0;
19489566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldComponents(section, f, &fieldNc[f]));
194937d0c07bSMatthew G Knepley     }
195037d0c07bSMatthew G Knepley     for (p = pStart; p < pEnd; ++p) {
195137d0c07bSMatthew G Knepley       PetscInt gdof;
195237d0c07bSMatthew G Knepley 
19539566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof));
195437d0c07bSMatthew G Knepley       if (gdof > 0) {
195537d0c07bSMatthew G Knepley         for (f = 0; f < nF; ++f) {
19563a544194SStefano Zampini           PetscInt fdof, fcdof, fpdof;
195737d0c07bSMatthew G Knepley 
19589566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof));
19599566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof));
19603a544194SStefano Zampini           fpdof = fdof - fcdof;
19613a544194SStefano Zampini           if (fpdof && fpdof != fieldNc[f]) {
19623a544194SStefano Zampini             /* Layout does not admit a pointwise block size */
19633a544194SStefano Zampini             fieldNc[f] = 1;
19643a544194SStefano Zampini           }
19653a544194SStefano Zampini           fieldSizes[f] += fpdof;
196637d0c07bSMatthew G Knepley         }
196737d0c07bSMatthew G Knepley       }
196837d0c07bSMatthew G Knepley     }
196937d0c07bSMatthew G Knepley     for (f = 0; f < nF; ++f) {
19709566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(fieldSizes[f], &fieldIndices[f]));
197137d0c07bSMatthew G Knepley       fieldSizes[f] = 0;
197237d0c07bSMatthew G Knepley     }
197337d0c07bSMatthew G Knepley     for (p = pStart; p < pEnd; ++p) {
197437d0c07bSMatthew G Knepley       PetscInt gdof, goff;
197537d0c07bSMatthew G Knepley 
19769566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof));
197737d0c07bSMatthew G Knepley       if (gdof > 0) {
19789566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(sectionGlobal, p, &goff));
197937d0c07bSMatthew G Knepley         for (f = 0; f < nF; ++f) {
198037d0c07bSMatthew G Knepley           PetscInt fdof, fcdof, fc;
198137d0c07bSMatthew G Knepley 
19829566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof));
19839566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof));
1984ad540459SPierre Jolivet           for (fc = 0; fc < fdof - fcdof; ++fc, ++fieldSizes[f]) fieldIndices[f][fieldSizes[f]] = goff++;
198537d0c07bSMatthew G Knepley         }
198637d0c07bSMatthew G Knepley       }
198737d0c07bSMatthew G Knepley     }
19888865f1eaSKarl Rupp     if (numFields) *numFields = nF;
198937d0c07bSMatthew G Knepley     if (fieldNames) {
19909566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nF, fieldNames));
199137d0c07bSMatthew G Knepley       for (f = 0; f < nF; ++f) {
199237d0c07bSMatthew G Knepley         const char *fieldName;
199337d0c07bSMatthew G Knepley 
19949566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetFieldName(section, f, &fieldName));
1995835f2295SStefano Zampini         PetscCall(PetscStrallocpy(fieldName, &(*fieldNames)[f]));
199637d0c07bSMatthew G Knepley       }
199737d0c07bSMatthew G Knepley     }
199837d0c07bSMatthew G Knepley     if (fields) {
19999566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nF, fields));
200037d0c07bSMatthew G Knepley       for (f = 0; f < nF; ++f) {
20013a544194SStefano Zampini         PetscInt bs, in[2], out[2];
20023a544194SStefano Zampini 
20039566063dSJacob Faibussowitsch         PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), fieldSizes[f], fieldIndices[f], PETSC_OWN_POINTER, &(*fields)[f]));
20043a544194SStefano Zampini         in[0] = -fieldNc[f];
20053a544194SStefano Zampini         in[1] = fieldNc[f];
2006462c564dSBarry Smith         PetscCallMPI(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm)));
20073a544194SStefano Zampini         bs = (-out[0] == out[1]) ? out[1] : 1;
20089566063dSJacob Faibussowitsch         PetscCall(ISSetBlockSize((*fields)[f], bs));
200937d0c07bSMatthew G Knepley       }
201037d0c07bSMatthew G Knepley     }
20119566063dSJacob Faibussowitsch     PetscCall(PetscFree3(fieldSizes, fieldNc, fieldIndices));
2012dbbe0bcdSBarry Smith   } else PetscTryTypeMethod(dm, createfieldis, numFields, fieldNames, fields);
20133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20144d343eeaSMatthew G Knepley }
20154d343eeaSMatthew G Knepley 
201616621825SDmitry Karpeev /*@C
2017bb7acecfSBarry Smith   DMCreateFieldDecomposition - Returns a list of `IS` objects defining a decomposition of a problem into subproblems
2018a4e35b19SJacob Faibussowitsch   corresponding to different fields.
2019e7c4fc90SDmitry Karpeev 
202020f4b53cSBarry Smith   Not Collective; No Fortran Support
2021e7c4fc90SDmitry Karpeev 
2022e7c4fc90SDmitry Karpeev   Input Parameter:
2023bb7acecfSBarry Smith . dm - the `DM` object
2024e7c4fc90SDmitry Karpeev 
2025e7c4fc90SDmitry Karpeev   Output Parameters:
202620f4b53cSBarry Smith + len      - The number of fields (or `NULL` if not requested)
202720f4b53cSBarry Smith . namelist - The name for each field (or `NULL` if not requested)
202820f4b53cSBarry Smith . islist   - The global indices for each field (or `NULL` if not requested)
202920f4b53cSBarry Smith - dmlist   - The `DM`s for each field subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined)
2030e7c4fc90SDmitry Karpeev 
2031e7c4fc90SDmitry Karpeev   Level: intermediate
2032e7c4fc90SDmitry Karpeev 
2033a4e35b19SJacob Faibussowitsch   Notes:
2034a4e35b19SJacob Faibussowitsch   Each `IS` contains the global indices of the dofs of the corresponding field, defined by
2035a4e35b19SJacob Faibussowitsch   `DMAddField()`. The optional list of `DM`s define the `DM` for each subproblem.
2036a4e35b19SJacob Faibussowitsch 
2037a4e35b19SJacob Faibussowitsch   The same as `DMCreateFieldIS()` but also returns a `DM` for each field.
2038a4e35b19SJacob Faibussowitsch 
203973ff1848SBarry Smith   The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with
204073ff1848SBarry Smith   `PetscFree()`, every entry of `islist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`,
2041bb7acecfSBarry Smith   and all of the arrays should be freed with `PetscFree()`.
2042e7c4fc90SDmitry Karpeev 
204360225df5SJacob Faibussowitsch   Developer Notes:
2044bb7acecfSBarry Smith   It is not clear why this function and `DMCreateFieldIS()` exist. Having two seems redundant and confusing.
2045bb7acecfSBarry Smith 
204673ff1848SBarry Smith   Unlike  `DMRefine()`, `DMCoarsen()`, and `DMCreateDomainDecomposition()` this provides no mechanism to provide hooks that are called after the
204773ff1848SBarry Smith   decomposition is computed.
204873ff1848SBarry Smith 
204973ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMCreateFieldIS()`, `DMCreateSubDM()`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`
2050e7c4fc90SDmitry Karpeev @*/
2051ce78bad3SBarry Smith PetscErrorCode DMCreateFieldDecomposition(DM dm, PetscInt *len, char ***namelist, IS *islist[], DM *dmlist[])
2052d71ae5a4SJacob Faibussowitsch {
2053e7c4fc90SDmitry Karpeev   PetscFunctionBegin;
2054e7c4fc90SDmitry Karpeev   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
20558865f1eaSKarl Rupp   if (len) {
20564f572ea9SToby Isaac     PetscAssertPointer(len, 2);
20578865f1eaSKarl Rupp     *len = 0;
20588865f1eaSKarl Rupp   }
20598865f1eaSKarl Rupp   if (namelist) {
20604f572ea9SToby Isaac     PetscAssertPointer(namelist, 3);
2061ea78f98cSLisandro Dalcin     *namelist = NULL;
20628865f1eaSKarl Rupp   }
20638865f1eaSKarl Rupp   if (islist) {
20644f572ea9SToby Isaac     PetscAssertPointer(islist, 4);
2065ea78f98cSLisandro Dalcin     *islist = NULL;
20668865f1eaSKarl Rupp   }
20678865f1eaSKarl Rupp   if (dmlist) {
20684f572ea9SToby Isaac     PetscAssertPointer(dmlist, 5);
2069ea78f98cSLisandro Dalcin     *dmlist = NULL;
20708865f1eaSKarl Rupp   }
2071f3f0edfdSDmitry Karpeev   /*
2072f3f0edfdSDmitry Karpeev    Is it a good idea to apply the following check across all impls?
2073f3f0edfdSDmitry Karpeev    Perhaps some impls can have a well-defined decomposition before DMSetUp?
2074f3f0edfdSDmitry Karpeev    This, however, follows the general principle that accessors are not well-behaved until the object is set up.
2075f3f0edfdSDmitry Karpeev    */
20767a8be351SBarry Smith   PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp");
207716621825SDmitry Karpeev   if (!dm->ops->createfielddecomposition) {
2078435a35e8SMatthew G Knepley     PetscSection section;
2079435a35e8SMatthew G Knepley     PetscInt     numFields, f;
2080435a35e8SMatthew G Knepley 
20819566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
20829566063dSJacob Faibussowitsch     if (section) PetscCall(PetscSectionGetNumFields(section, &numFields));
2083435a35e8SMatthew G Knepley     if (section && numFields && dm->ops->createsubdm) {
2084f25d98f1SMatthew G. Knepley       if (len) *len = numFields;
20859566063dSJacob Faibussowitsch       if (namelist) PetscCall(PetscMalloc1(numFields, namelist));
20869566063dSJacob Faibussowitsch       if (islist) PetscCall(PetscMalloc1(numFields, islist));
20879566063dSJacob Faibussowitsch       if (dmlist) PetscCall(PetscMalloc1(numFields, dmlist));
2088435a35e8SMatthew G Knepley       for (f = 0; f < numFields; ++f) {
2089435a35e8SMatthew G Knepley         const char *fieldName;
2090435a35e8SMatthew G Knepley 
20919566063dSJacob Faibussowitsch         PetscCall(DMCreateSubDM(dm, 1, &f, islist ? &(*islist)[f] : NULL, dmlist ? &(*dmlist)[f] : NULL));
209203dc3394SMatthew G. Knepley         if (namelist) {
20939566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldName(section, f, &fieldName));
2094835f2295SStefano Zampini           PetscCall(PetscStrallocpy(fieldName, &(*namelist)[f]));
2095435a35e8SMatthew G Knepley         }
209603dc3394SMatthew G. Knepley       }
2097435a35e8SMatthew G Knepley     } else {
20989566063dSJacob Faibussowitsch       PetscCall(DMCreateFieldIS(dm, len, namelist, islist));
2099e7c4fc90SDmitry Karpeev       /* By default there are no DMs associated with subproblems. */
21000298fd71SBarry Smith       if (dmlist) *dmlist = NULL;
2101e7c4fc90SDmitry Karpeev     }
2102dbbe0bcdSBarry Smith   } else PetscUseTypeMethod(dm, createfielddecomposition, len, namelist, islist, dmlist);
21033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
210416621825SDmitry Karpeev }
210516621825SDmitry Karpeev 
21065d83a8b1SBarry Smith /*@
210720f4b53cSBarry Smith   DMCreateSubDM - Returns an `IS` and `DM` encapsulating a subproblem defined by the fields passed in.
210820f4b53cSBarry Smith   The fields are defined by `DMCreateFieldIS()`.
2109435a35e8SMatthew G Knepley 
2110435a35e8SMatthew G Knepley   Not collective
2111435a35e8SMatthew G Knepley 
2112435a35e8SMatthew G Knepley   Input Parameters:
2113bb7acecfSBarry Smith + dm        - The `DM` object
2114bb7acecfSBarry Smith . numFields - The number of fields to select
21152adcc780SMatthew G. Knepley - fields    - The field numbers of the selected fields
2116435a35e8SMatthew G Knepley 
2117435a35e8SMatthew G Knepley   Output Parameters:
2118b6971eaeSBarry Smith + is    - The global indices for all the degrees of freedom in the new sub `DM`, use `NULL` if not needed
2119b6971eaeSBarry Smith - subdm - The `DM` for the subproblem, use `NULL` if not needed
2120435a35e8SMatthew G Knepley 
212120f4b53cSBarry Smith   Level: intermediate
212220f4b53cSBarry Smith 
2123bb7acecfSBarry Smith   Note:
2124bb7acecfSBarry Smith   You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed
21255d3b26e6SMatthew G. Knepley 
212660225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateFieldIS()`, `DMCreateFieldDecomposition()`, `DMAddField()`, `DMCreateSuperDM()`, `IS`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
2127435a35e8SMatthew G Knepley @*/
2128d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSubDM(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm)
2129d71ae5a4SJacob Faibussowitsch {
2130435a35e8SMatthew G Knepley   PetscFunctionBegin;
2131435a35e8SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
21324f572ea9SToby Isaac   PetscAssertPointer(fields, 3);
21334f572ea9SToby Isaac   if (is) PetscAssertPointer(is, 4);
21344f572ea9SToby Isaac   if (subdm) PetscAssertPointer(subdm, 5);
2135dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createsubdm, numFields, fields, is, subdm);
21363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2137435a35e8SMatthew G Knepley }
2138435a35e8SMatthew G Knepley 
21392adcc780SMatthew G. Knepley /*@C
2140ce78bad3SBarry Smith   DMCreateSuperDM - Returns an arrays of `IS` and a single `DM` encapsulating a superproblem defined by multiple `DM`s passed in.
21412adcc780SMatthew G. Knepley 
21422adcc780SMatthew G. Knepley   Not collective
21432adcc780SMatthew G. Knepley 
2144d8d19677SJose E. Roman   Input Parameters:
2145bb7acecfSBarry Smith + dms - The `DM` objects
2146bb7acecfSBarry Smith - n   - The number of `DM`s
21472adcc780SMatthew G. Knepley 
21482adcc780SMatthew G. Knepley   Output Parameters:
2149ce78bad3SBarry Smith + is      - The global indices for each of subproblem within the super `DM`, or `NULL`, its length is `n`
2150bb7acecfSBarry Smith - superdm - The `DM` for the superproblem
21512adcc780SMatthew G. Knepley 
215220f4b53cSBarry Smith   Level: intermediate
215320f4b53cSBarry Smith 
2154bb7acecfSBarry Smith   Note:
2155bb7acecfSBarry Smith   You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed
21565d3b26e6SMatthew G. Knepley 
215773ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateSubDM()`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`, `DMCreateDomainDecomposition()`
21582adcc780SMatthew G. Knepley @*/
21595d83a8b1SBarry Smith PetscErrorCode DMCreateSuperDM(DM dms[], PetscInt n, IS *is[], DM *superdm)
2160d71ae5a4SJacob Faibussowitsch {
21612adcc780SMatthew G. Knepley   PetscInt i;
21622adcc780SMatthew G. Knepley 
21632adcc780SMatthew G. Knepley   PetscFunctionBegin;
21644f572ea9SToby Isaac   PetscAssertPointer(dms, 1);
2165ad540459SPierre Jolivet   for (i = 0; i < n; ++i) PetscValidHeaderSpecific(dms[i], DM_CLASSID, 1);
21664f572ea9SToby Isaac   if (is) PetscAssertPointer(is, 3);
21674f572ea9SToby Isaac   PetscAssertPointer(superdm, 4);
2168bb7acecfSBarry Smith   PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of DMs must be nonnegative: %" PetscInt_FMT, n);
2169bb7acecfSBarry Smith   if (n) {
2170b9d85ea2SLisandro Dalcin     DM dm = dms[0];
217100045ab3SPierre Jolivet     PetscCheck(dm->ops->createsuperdm, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No method createsuperdm for DM of type %s", ((PetscObject)dm)->type_name);
2172dbbe0bcdSBarry Smith     PetscCall((*dm->ops->createsuperdm)(dms, n, is, superdm));
21732adcc780SMatthew G. Knepley   }
21743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21752adcc780SMatthew G. Knepley }
21762adcc780SMatthew G. Knepley 
217716621825SDmitry Karpeev /*@C
2178a4e35b19SJacob Faibussowitsch   DMCreateDomainDecomposition - Returns lists of `IS` objects defining a decomposition of a
2179a4e35b19SJacob Faibussowitsch   problem into subproblems corresponding to restrictions to pairs of nested subdomains.
218016621825SDmitry Karpeev 
218120f4b53cSBarry Smith   Not Collective
218216621825SDmitry Karpeev 
218316621825SDmitry Karpeev   Input Parameter:
2184bb7acecfSBarry Smith . dm - the `DM` object
218516621825SDmitry Karpeev 
218616621825SDmitry Karpeev   Output Parameters:
2187ce78bad3SBarry Smith + n           - The number of subproblems in the domain decomposition (or `NULL` if not requested), also the length of the four arrays below
218820f4b53cSBarry Smith . namelist    - The name for each subdomain (or `NULL` if not requested)
218973ff1848SBarry Smith . innerislist - The global indices for each inner subdomain (or `NULL`, if not requested)
219073ff1848SBarry Smith . outerislist - The global indices for each outer subdomain (or `NULL`, if not requested)
219173ff1848SBarry Smith - dmlist      - The `DM`s for each subdomain subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined)
219216621825SDmitry Karpeev 
219316621825SDmitry Karpeev   Level: intermediate
219416621825SDmitry Karpeev 
219573ff1848SBarry Smith   Notes:
2196a4e35b19SJacob Faibussowitsch   Each `IS` contains the global indices of the dofs of the corresponding subdomains with in the
2197a4e35b19SJacob Faibussowitsch   dofs of the original `DM`. The inner subdomains conceptually define a nonoverlapping
2198a4e35b19SJacob Faibussowitsch   covering, while outer subdomains can overlap.
2199a4e35b19SJacob Faibussowitsch 
2200a4e35b19SJacob Faibussowitsch   The optional list of `DM`s define a `DM` for each subproblem.
2201a4e35b19SJacob Faibussowitsch 
220273ff1848SBarry Smith   The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with
220373ff1848SBarry Smith   `PetscFree()`, every entry of `innerislist` and `outerislist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`,
2204bb7acecfSBarry Smith   and all of the arrays should be freed with `PetscFree()`.
220516621825SDmitry Karpeev 
2206a4e35b19SJacob Faibussowitsch   Developer Notes:
220720f4b53cSBarry Smith   The `dmlist` is for the inner subdomains or the outer subdomains or all subdomains?
2208bb7acecfSBarry Smith 
220973ff1848SBarry Smith   The names are inconsistent, the hooks use `DMSubDomainHook` which is nothing like `DMCreateDomainDecomposition()` while `DMRefineHook` is used for `DMRefine()`.
221073ff1848SBarry Smith 
221173ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateFieldDecomposition()`, `DMDestroy()`, `DMCreateDomainDecompositionScatters()`, `DMView()`, `DMCreateInterpolation()`,
221273ff1848SBarry Smith           `DMSubDomainHookAdd()`, `DMSubDomainHookRemove()`,`DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`
221316621825SDmitry Karpeev @*/
2214ce78bad3SBarry Smith PetscErrorCode DMCreateDomainDecomposition(DM dm, PetscInt *n, char ***namelist, IS *innerislist[], IS *outerislist[], DM *dmlist[])
2215d71ae5a4SJacob Faibussowitsch {
2216be081cd6SPeter Brune   DMSubDomainHookLink link;
2217be081cd6SPeter Brune   PetscInt            i, l;
221816621825SDmitry Karpeev 
221916621825SDmitry Karpeev   PetscFunctionBegin;
222016621825SDmitry Karpeev   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
22219371c9d4SSatish Balay   if (n) {
22224f572ea9SToby Isaac     PetscAssertPointer(n, 2);
22239371c9d4SSatish Balay     *n = 0;
22249371c9d4SSatish Balay   }
22259371c9d4SSatish Balay   if (namelist) {
22264f572ea9SToby Isaac     PetscAssertPointer(namelist, 3);
22279371c9d4SSatish Balay     *namelist = NULL;
22289371c9d4SSatish Balay   }
22299371c9d4SSatish Balay   if (innerislist) {
22304f572ea9SToby Isaac     PetscAssertPointer(innerislist, 4);
22319371c9d4SSatish Balay     *innerislist = NULL;
22329371c9d4SSatish Balay   }
22339371c9d4SSatish Balay   if (outerislist) {
22344f572ea9SToby Isaac     PetscAssertPointer(outerislist, 5);
22359371c9d4SSatish Balay     *outerislist = NULL;
22369371c9d4SSatish Balay   }
22379371c9d4SSatish Balay   if (dmlist) {
22384f572ea9SToby Isaac     PetscAssertPointer(dmlist, 6);
22399371c9d4SSatish Balay     *dmlist = NULL;
22409371c9d4SSatish Balay   }
2241f3f0edfdSDmitry Karpeev   /*
2242f3f0edfdSDmitry Karpeev    Is it a good idea to apply the following check across all impls?
2243f3f0edfdSDmitry Karpeev    Perhaps some impls can have a well-defined decomposition before DMSetUp?
2244f3f0edfdSDmitry Karpeev    This, however, follows the general principle that accessors are not well-behaved until the object is set up.
2245f3f0edfdSDmitry Karpeev    */
22467a8be351SBarry Smith   PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp");
224716621825SDmitry Karpeev   if (dm->ops->createdomaindecomposition) {
2248dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm, createdomaindecomposition, &l, namelist, innerislist, outerislist, dmlist);
224914a18fd3SPeter Brune     /* copy subdomain hooks and context over to the subdomain DMs */
2250f891f5b9SPatrick Sanan     if (dmlist && *dmlist) {
2251be081cd6SPeter Brune       for (i = 0; i < l; i++) {
2252be081cd6SPeter Brune         for (link = dm->subdomainhook; link; link = link->next) {
22539566063dSJacob Faibussowitsch           if (link->ddhook) PetscCall((*link->ddhook)(dm, (*dmlist)[i], link->ctx));
2254be081cd6SPeter Brune         }
2255648262bbSPatrick Sanan         if (dm->ctx) (*dmlist)[i]->ctx = dm->ctx;
2256e7c4fc90SDmitry Karpeev       }
225714a18fd3SPeter Brune     }
2258bb7acecfSBarry Smith     if (n) *n = l;
225914a18fd3SPeter Brune   }
22603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2261e30e807fSPeter Brune }
2262e30e807fSPeter Brune 
2263e30e807fSPeter Brune /*@C
226473ff1848SBarry Smith   DMCreateDomainDecompositionScatters - Returns scatters to the subdomain vectors from the global vector for subdomains created with
226573ff1848SBarry Smith   `DMCreateDomainDecomposition()`
2266e30e807fSPeter Brune 
226720f4b53cSBarry Smith   Not Collective
2268e30e807fSPeter Brune 
2269e30e807fSPeter Brune   Input Parameters:
2270bb7acecfSBarry Smith + dm     - the `DM` object
227173ff1848SBarry Smith . n      - the number of subdomains
2272e30e807fSPeter Brune - subdms - the local subdomains
2273e30e807fSPeter Brune 
2274e30e807fSPeter Brune   Output Parameters:
22756b867d5aSJose E. Roman + iscat - scatter from global vector to nonoverlapping global vector entries on subdomain
2276e30e807fSPeter Brune . oscat - scatter from global vector to overlapping global vector entries on subdomain
2277e30e807fSPeter Brune - gscat - scatter from global vector to local vector on subdomain (fills in ghosts)
2278e30e807fSPeter Brune 
227920f4b53cSBarry Smith   Level: developer
228020f4b53cSBarry Smith 
2281bb7acecfSBarry Smith   Note:
2282bb7acecfSBarry Smith   This is an alternative to the iis and ois arguments in `DMCreateDomainDecomposition()` that allow for the solution
2283e30e807fSPeter Brune   of general nonlinear problems with overlapping subdomain methods.  While merely having index sets that enable subsets
2284e30e807fSPeter Brune   of the residual equations to be created is fine for linear problems, nonlinear problems require local assembly of
2285e30e807fSPeter Brune   solution and residual data.
2286e30e807fSPeter Brune 
228773ff1848SBarry Smith   Developer Note:
2288a4e35b19SJacob Faibussowitsch   Can the subdms input be anything or are they exactly the `DM` obtained from
2289a4e35b19SJacob Faibussowitsch   `DMCreateDomainDecomposition()`?
2290bb7acecfSBarry Smith 
22911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`
2292e30e807fSPeter Brune @*/
22935d83a8b1SBarry Smith PetscErrorCode DMCreateDomainDecompositionScatters(DM dm, PetscInt n, DM *subdms, VecScatter *iscat[], VecScatter *oscat[], VecScatter *gscat[])
2294d71ae5a4SJacob Faibussowitsch {
2295e30e807fSPeter Brune   PetscFunctionBegin;
2296e30e807fSPeter Brune   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
22974f572ea9SToby Isaac   PetscAssertPointer(subdms, 3);
2298dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createddscatters, n, subdms, iscat, oscat, gscat);
22993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2300e7c4fc90SDmitry Karpeev }
2301e7c4fc90SDmitry Karpeev 
230247c6ae99SBarry Smith /*@
2303bb7acecfSBarry Smith   DMRefine - Refines a `DM` object using a standard nonadaptive refinement of the underlying mesh
230447c6ae99SBarry Smith 
230520f4b53cSBarry Smith   Collective
230647c6ae99SBarry Smith 
2307d8d19677SJose E. Roman   Input Parameters:
2308bb7acecfSBarry Smith + dm   - the `DM` object
2309bb7acecfSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`)
231047c6ae99SBarry Smith 
231147c6ae99SBarry Smith   Output Parameter:
231220f4b53cSBarry Smith . dmf - the refined `DM`, or `NULL`
2313ae0a1c52SMatthew G Knepley 
231420f4b53cSBarry Smith   Options Database Key:
2315412e9a14SMatthew G. Knepley . -dm_plex_cell_refiner <strategy> - chooses the refinement strategy, e.g. regular, tohex
2316412e9a14SMatthew G. Knepley 
231747c6ae99SBarry Smith   Level: developer
231847c6ae99SBarry Smith 
231920f4b53cSBarry Smith   Note:
232020f4b53cSBarry Smith   If no refinement was done, the return value is `NULL`
232120f4b53cSBarry Smith 
232273ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`,
232373ff1848SBarry Smith           `DMRefineHookAdd()`, `DMRefineHookRemove()`
232447c6ae99SBarry Smith @*/
2325d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefine(DM dm, MPI_Comm comm, DM *dmf)
2326d71ae5a4SJacob Faibussowitsch {
2327c833c3b5SJed Brown   DMRefineHookLink link;
232847c6ae99SBarry Smith 
232947c6ae99SBarry Smith   PetscFunctionBegin;
2330732e2eb9SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
23319566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_Refine, dm, 0, 0, 0));
2332dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, refine, comm, dmf);
23334057135bSMatthew G Knepley   if (*dmf) {
233443842a1eSJed Brown     (*dmf)->ops->creatematrix = dm->ops->creatematrix;
23358865f1eaSKarl Rupp 
23369566063dSJacob Faibussowitsch     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmf));
23378865f1eaSKarl Rupp 
2338644e2e5bSBarry Smith     (*dmf)->ctx       = dm->ctx;
23390598a293SJed Brown     (*dmf)->leveldown = dm->leveldown;
2340656b349aSBarry Smith     (*dmf)->levelup   = dm->levelup + 1;
23418865f1eaSKarl Rupp 
23429566063dSJacob Faibussowitsch     PetscCall(DMSetMatType(*dmf, dm->mattype));
2343c833c3b5SJed Brown     for (link = dm->refinehook; link; link = link->next) {
23441baa6e33SBarry Smith       if (link->refinehook) PetscCall((*link->refinehook)(dm, *dmf, link->ctx));
2345c833c3b5SJed Brown     }
2346c833c3b5SJed Brown   }
23479566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_Refine, dm, 0, 0, 0));
23483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2349c833c3b5SJed Brown }
2350c833c3b5SJed Brown 
2351bb9467b5SJed Brown /*@C
2352c833c3b5SJed Brown   DMRefineHookAdd - adds a callback to be run when interpolating a nonlinear problem to a finer grid
2353c833c3b5SJed Brown 
235420f4b53cSBarry Smith   Logically Collective; No Fortran Support
2355c833c3b5SJed Brown 
23564165533cSJose E. Roman   Input Parameters:
2357bb7acecfSBarry Smith + coarse     - `DM` on which to run a hook when interpolating to a finer level
2358bb7acecfSBarry Smith . refinehook - function to run when setting up the finer level
2359f826b5fcSPierre Jolivet . interphook - function to run to update data on finer levels (once per `SNESSolve()`)
236020f4b53cSBarry Smith - ctx        - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2361c833c3b5SJed Brown 
236220f4b53cSBarry Smith   Calling sequence of `refinehook`:
2363bb7acecfSBarry Smith + coarse - coarse level `DM`
2364bb7acecfSBarry Smith . fine   - fine level `DM` to interpolate problem to
2365c833c3b5SJed Brown - ctx    - optional user-defined function context
2366c833c3b5SJed Brown 
236720f4b53cSBarry Smith   Calling sequence of `interphook`:
2368bb7acecfSBarry Smith + coarse - coarse level `DM`
2369c833c3b5SJed Brown . interp - matrix interpolating a coarse-level solution to the finer grid
2370bb7acecfSBarry Smith . fine   - fine level `DM` to update
2371c833c3b5SJed Brown - ctx    - optional user-defined function context
2372c833c3b5SJed Brown 
2373c833c3b5SJed Brown   Level: advanced
2374c833c3b5SJed Brown 
2375c833c3b5SJed Brown   Notes:
2376bb7acecfSBarry Smith   This function is only needed if auxiliary data that is attached to the `DM`s via, for example, `PetscObjectCompose()`, needs to be
2377bb7acecfSBarry Smith   passed to fine grids while grid sequencing.
2378bb7acecfSBarry Smith 
2379bb7acecfSBarry Smith   The actual interpolation is done when `DMInterpolate()` is called.
2380c833c3b5SJed Brown 
2381c833c3b5SJed Brown   If this function is called multiple times, the hooks will be run in the order they are added.
2382c833c3b5SJed Brown 
23831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2384c833c3b5SJed Brown @*/
2385a4e35b19SJacob Faibussowitsch PetscErrorCode DMRefineHookAdd(DM coarse, PetscErrorCode (*refinehook)(DM coarse, DM fine, void *ctx), PetscErrorCode (*interphook)(DM coarse, Mat interp, DM fine, void *ctx), void *ctx)
2386d71ae5a4SJacob Faibussowitsch {
2387c833c3b5SJed Brown   DMRefineHookLink link, *p;
2388c833c3b5SJed Brown 
2389c833c3b5SJed Brown   PetscFunctionBegin;
2390c833c3b5SJed Brown   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
23913d8e3701SJed Brown   for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
23923ba16761SJacob Faibussowitsch     if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
23933d8e3701SJed Brown   }
23949566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
2395c833c3b5SJed Brown   link->refinehook = refinehook;
2396c833c3b5SJed Brown   link->interphook = interphook;
2397c833c3b5SJed Brown   link->ctx        = ctx;
23980298fd71SBarry Smith   link->next       = NULL;
2399c833c3b5SJed Brown   *p               = link;
24003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2401c833c3b5SJed Brown }
2402c833c3b5SJed Brown 
24033d8e3701SJed Brown /*@C
2404bb7acecfSBarry Smith   DMRefineHookRemove - remove a callback from the list of hooks, that have been set with `DMRefineHookAdd()`, to be run when interpolating
2405bb7acecfSBarry Smith   a nonlinear problem to a finer grid
24063d8e3701SJed Brown 
240720f4b53cSBarry Smith   Logically Collective; No Fortran Support
24083d8e3701SJed Brown 
24094165533cSJose E. Roman   Input Parameters:
2410bb7acecfSBarry Smith + coarse     - the `DM` on which to run a hook when restricting to a coarser level
2411bb7acecfSBarry Smith . refinehook - function to run when setting up a finer level
2412bb7acecfSBarry Smith . interphook - function to run to update data on finer levels
241320f4b53cSBarry Smith - ctx        - [optional] user-defined context for provide data for the hooks (may be `NULL`)
24143d8e3701SJed Brown 
24153d8e3701SJed Brown   Level: advanced
24163d8e3701SJed Brown 
2417bb7acecfSBarry Smith   Note:
24183d8e3701SJed Brown   This function does nothing if the hook is not in the list.
24193d8e3701SJed Brown 
24201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `DMCoarsenHookRemove()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
24213d8e3701SJed Brown @*/
2422d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookRemove(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx)
2423d71ae5a4SJacob Faibussowitsch {
24243d8e3701SJed Brown   DMRefineHookLink link, *p;
24253d8e3701SJed Brown 
24263d8e3701SJed Brown   PetscFunctionBegin;
24273d8e3701SJed Brown   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
24283d8e3701SJed Brown   for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Search the list of current hooks */
24293d8e3701SJed Brown     if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) {
24303d8e3701SJed Brown       link = *p;
24313d8e3701SJed Brown       *p   = link->next;
24329566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
24333d8e3701SJed Brown       break;
24343d8e3701SJed Brown     }
24353d8e3701SJed Brown   }
24363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24373d8e3701SJed Brown }
24383d8e3701SJed Brown 
2439c833c3b5SJed Brown /*@
2440bb7acecfSBarry Smith   DMInterpolate - interpolates user-defined problem data attached to a `DM` to a finer `DM` by running hooks registered by `DMRefineHookAdd()`
2441c833c3b5SJed Brown 
2442c833c3b5SJed Brown   Collective if any hooks are
2443c833c3b5SJed Brown 
24444165533cSJose E. Roman   Input Parameters:
2445bb7acecfSBarry Smith + coarse - coarser `DM` to use as a base
2446bb7acecfSBarry Smith . interp - interpolation matrix, apply using `MatInterpolate()`
2447bb7acecfSBarry Smith - fine   - finer `DM` to update
2448c833c3b5SJed Brown 
2449c833c3b5SJed Brown   Level: developer
2450c833c3b5SJed Brown 
245173ff1848SBarry Smith   Developer Note:
2452bb7acecfSBarry Smith   This routine is called `DMInterpolate()` while the hook is called `DMRefineHookAdd()`. It would be better to have an
2453bb7acecfSBarry Smith   an API with consistent terminology.
2454bb7acecfSBarry Smith 
24551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `MatInterpolate()`
2456c833c3b5SJed Brown @*/
2457d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolate(DM coarse, Mat interp, DM fine)
2458d71ae5a4SJacob Faibussowitsch {
2459c833c3b5SJed Brown   DMRefineHookLink link;
2460c833c3b5SJed Brown 
2461c833c3b5SJed Brown   PetscFunctionBegin;
2462c833c3b5SJed Brown   for (link = fine->refinehook; link; link = link->next) {
24631baa6e33SBarry Smith     if (link->interphook) PetscCall((*link->interphook)(coarse, interp, fine, link->ctx));
24644057135bSMatthew G Knepley   }
24653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
246647c6ae99SBarry Smith }
246747c6ae99SBarry Smith 
2468eb3f98d2SBarry Smith /*@
24691f3379b2SToby Isaac   DMInterpolateSolution - Interpolates a solution from a coarse mesh to a fine mesh.
24701f3379b2SToby Isaac 
247120f4b53cSBarry Smith   Collective
24721f3379b2SToby Isaac 
24734165533cSJose E. Roman   Input Parameters:
2474bb7acecfSBarry Smith + coarse    - coarse `DM`
2475bb7acecfSBarry Smith . fine      - fine `DM`
2476bb7acecfSBarry Smith . interp    - (optional) the matrix computed by `DMCreateInterpolation()`.  Implementations may not need this, but if it
2477bb7acecfSBarry Smith             is available it can avoid some recomputation.  If it is provided, `MatInterpolate()` will be used if
2478bb7acecfSBarry Smith             the coarse `DM` does not have a specialized implementation.
24791f3379b2SToby Isaac - coarseSol - solution on the coarse mesh
24801f3379b2SToby Isaac 
24814165533cSJose E. Roman   Output Parameter:
24821f3379b2SToby Isaac . fineSol - the interpolation of coarseSol to the fine mesh
24831f3379b2SToby Isaac 
24841f3379b2SToby Isaac   Level: developer
24851f3379b2SToby Isaac 
2486bb7acecfSBarry Smith   Note:
2487bb7acecfSBarry Smith   This function exists because the interpolation of a solution vector between meshes is not always a linear
24881f3379b2SToby Isaac   map.  For example, if a boundary value problem has an inhomogeneous Dirichlet boundary condition that is compressed
24891f3379b2SToby Isaac   out of the solution vector.  Or if interpolation is inherently a nonlinear operation, such as a method using
24901f3379b2SToby Isaac   slope-limiting reconstruction.
24911f3379b2SToby Isaac 
249273ff1848SBarry Smith   Developer Note:
2493bb7acecfSBarry Smith   This doesn't just interpolate "solutions" so its API name is questionable.
2494bb7acecfSBarry Smith 
24951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMInterpolate()`, `DMCreateInterpolation()`
24961f3379b2SToby Isaac @*/
2497d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolateSolution(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol)
2498d71ae5a4SJacob Faibussowitsch {
24991f3379b2SToby Isaac   PetscErrorCode (*interpsol)(DM, DM, Mat, Vec, Vec) = NULL;
25001f3379b2SToby Isaac 
25011f3379b2SToby Isaac   PetscFunctionBegin;
25021f3379b2SToby Isaac   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
25031f3379b2SToby Isaac   if (interp) PetscValidHeaderSpecific(interp, MAT_CLASSID, 3);
25041f3379b2SToby Isaac   PetscValidHeaderSpecific(coarseSol, VEC_CLASSID, 4);
25051f3379b2SToby Isaac   PetscValidHeaderSpecific(fineSol, VEC_CLASSID, 5);
25061f3379b2SToby Isaac 
25079566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)coarse, "DMInterpolateSolution_C", &interpsol));
25081f3379b2SToby Isaac   if (interpsol) {
25099566063dSJacob Faibussowitsch     PetscCall((*interpsol)(coarse, fine, interp, coarseSol, fineSol));
25101f3379b2SToby Isaac   } else if (interp) {
25119566063dSJacob Faibussowitsch     PetscCall(MatInterpolate(interp, coarseSol, fineSol));
251298921bdaSJacob Faibussowitsch   } else SETERRQ(PetscObjectComm((PetscObject)coarse), PETSC_ERR_SUP, "DM %s does not implement DMInterpolateSolution()", ((PetscObject)coarse)->type_name);
25133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25141f3379b2SToby Isaac }
25151f3379b2SToby Isaac 
25161f3379b2SToby Isaac /*@
2517bb7acecfSBarry Smith   DMGetRefineLevel - Gets the number of refinements that have generated this `DM` from some initial `DM`.
2518eb3f98d2SBarry Smith 
2519eb3f98d2SBarry Smith   Not Collective
2520eb3f98d2SBarry Smith 
2521eb3f98d2SBarry Smith   Input Parameter:
2522bb7acecfSBarry Smith . dm - the `DM` object
2523eb3f98d2SBarry Smith 
2524eb3f98d2SBarry Smith   Output Parameter:
2525eb3f98d2SBarry Smith . level - number of refinements
2526eb3f98d2SBarry Smith 
2527eb3f98d2SBarry Smith   Level: developer
2528eb3f98d2SBarry Smith 
2529bb7acecfSBarry Smith   Note:
2530bb7acecfSBarry Smith   This can be used, by example, to set the number of coarser levels associated with this `DM` for a multigrid solver.
2531bb7acecfSBarry Smith 
25321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
2533eb3f98d2SBarry Smith @*/
2534d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRefineLevel(DM dm, PetscInt *level)
2535d71ae5a4SJacob Faibussowitsch {
2536eb3f98d2SBarry Smith   PetscFunctionBegin;
2537eb3f98d2SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2538eb3f98d2SBarry Smith   *level = dm->levelup;
25393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2540eb3f98d2SBarry Smith }
2541eb3f98d2SBarry Smith 
2542fef3a512SBarry Smith /*@
2543bb7acecfSBarry Smith   DMSetRefineLevel - Sets the number of refinements that have generated this `DM`.
2544fef3a512SBarry Smith 
2545fef3a512SBarry Smith   Not Collective
2546fef3a512SBarry Smith 
2547d8d19677SJose E. Roman   Input Parameters:
2548bb7acecfSBarry Smith + dm    - the `DM` object
2549fef3a512SBarry Smith - level - number of refinements
2550fef3a512SBarry Smith 
2551fef3a512SBarry Smith   Level: advanced
2552fef3a512SBarry Smith 
255395452b02SPatrick Sanan   Notes:
2554bb7acecfSBarry Smith   This value is used by `PCMG` to determine how many multigrid levels to use
2555fef3a512SBarry Smith 
2556bb7acecfSBarry Smith   The values are usually set automatically by the process that is causing the refinements of an initial `DM` by calling this routine.
2557bb7acecfSBarry Smith 
25581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRefineLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
2559fef3a512SBarry Smith @*/
2560d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRefineLevel(DM dm, PetscInt level)
2561d71ae5a4SJacob Faibussowitsch {
2562fef3a512SBarry Smith   PetscFunctionBegin;
2563fef3a512SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2564fef3a512SBarry Smith   dm->levelup = level;
25653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2566fef3a512SBarry Smith }
2567fef3a512SBarry Smith 
2568d410b0cfSMatthew G. Knepley /*@
2569bb7acecfSBarry Smith   DMExtrude - Extrude a `DM` object from a surface
2570d410b0cfSMatthew G. Knepley 
257120f4b53cSBarry Smith   Collective
2572d410b0cfSMatthew G. Knepley 
2573f1a722f8SMatthew G. Knepley   Input Parameters:
2574bb7acecfSBarry Smith + dm     - the `DM` object
2575d410b0cfSMatthew G. Knepley - layers - the number of extruded cell layers
2576d410b0cfSMatthew G. Knepley 
2577d410b0cfSMatthew G. Knepley   Output Parameter:
257820f4b53cSBarry Smith . dme - the extruded `DM`, or `NULL`
2579d410b0cfSMatthew G. Knepley 
2580d410b0cfSMatthew G. Knepley   Level: developer
2581d410b0cfSMatthew G. Knepley 
258220f4b53cSBarry Smith   Note:
258320f4b53cSBarry Smith   If no extrusion was done, the return value is `NULL`
258420f4b53cSBarry Smith 
25851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`
2586d410b0cfSMatthew G. Knepley @*/
2587d71ae5a4SJacob Faibussowitsch PetscErrorCode DMExtrude(DM dm, PetscInt layers, DM *dme)
2588d71ae5a4SJacob Faibussowitsch {
2589d410b0cfSMatthew G. Knepley   PetscFunctionBegin;
2590d410b0cfSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2591dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, extrude, layers, dme);
2592d410b0cfSMatthew G. Knepley   if (*dme) {
2593d410b0cfSMatthew G. Knepley     (*dme)->ops->creatematrix = dm->ops->creatematrix;
25949566063dSJacob Faibussowitsch     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dme));
2595d410b0cfSMatthew G. Knepley     (*dme)->ctx = dm->ctx;
25969566063dSJacob Faibussowitsch     PetscCall(DMSetMatType(*dme, dm->mattype));
2597d410b0cfSMatthew G. Knepley   }
25983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2599d410b0cfSMatthew G. Knepley }
2600d410b0cfSMatthew G. Knepley 
2601d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformDM_Internal(DM dm, DM *tdm)
2602d71ae5a4SJacob Faibussowitsch {
2603ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2604ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
26054f572ea9SToby Isaac   PetscAssertPointer(tdm, 2);
2606ca3d3a14SMatthew G. Knepley   *tdm = dm->transformDM;
26073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2608ca3d3a14SMatthew G. Knepley }
2609ca3d3a14SMatthew G. Knepley 
2610d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformVec_Internal(DM dm, Vec *tv)
2611d71ae5a4SJacob Faibussowitsch {
2612ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2613ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
26144f572ea9SToby Isaac   PetscAssertPointer(tv, 2);
2615ca3d3a14SMatthew G. Knepley   *tv = dm->transform;
26163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2617ca3d3a14SMatthew G. Knepley }
2618ca3d3a14SMatthew G. Knepley 
2619ca3d3a14SMatthew G. Knepley /*@
2620bb7acecfSBarry Smith   DMHasBasisTransform - Whether the `DM` employs a basis transformation from functions in global vectors to functions in local vectors
2621ca3d3a14SMatthew G. Knepley 
2622ca3d3a14SMatthew G. Knepley   Input Parameter:
262320f4b53cSBarry Smith . dm - The `DM`
2624ca3d3a14SMatthew G. Knepley 
2625ca3d3a14SMatthew G. Knepley   Output Parameter:
262620f4b53cSBarry Smith . flg - `PETSC_TRUE` if a basis transformation should be done
2627ca3d3a14SMatthew G. Knepley 
2628ca3d3a14SMatthew G. Knepley   Level: developer
2629ca3d3a14SMatthew G. Knepley 
26301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`, `DMPlexCreateBasisRotation()`
2631ca3d3a14SMatthew G. Knepley @*/
2632d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasBasisTransform(DM dm, PetscBool *flg)
2633d71ae5a4SJacob Faibussowitsch {
2634ca3d3a14SMatthew G. Knepley   Vec tv;
2635ca3d3a14SMatthew G. Knepley 
2636ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2637ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
26384f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
26399566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
2640ca3d3a14SMatthew G. Knepley   *flg = tv ? PETSC_TRUE : PETSC_FALSE;
26413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2642ca3d3a14SMatthew G. Knepley }
2643ca3d3a14SMatthew G. Knepley 
2644d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConstructBasisTransform_Internal(DM dm)
2645d71ae5a4SJacob Faibussowitsch {
2646ca3d3a14SMatthew G. Knepley   PetscSection s, ts;
2647ca3d3a14SMatthew G. Knepley   PetscScalar *ta;
2648ca3d3a14SMatthew G. Knepley   PetscInt     cdim, pStart, pEnd, p, Nf, f, Nc, dof;
2649ca3d3a14SMatthew G. Knepley 
2650ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
26519566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
26529566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
26539566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
26549566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
26559566063dSJacob Faibussowitsch   PetscCall(DMClone(dm, &dm->transformDM));
26569566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm->transformDM, &ts));
26579566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetNumFields(ts, Nf));
26589566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(ts, pStart, pEnd));
2659ca3d3a14SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
26609566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetFieldComponents(s, f, &Nc));
2661ca3d3a14SMatthew G. Knepley     /* We could start to label fields by their transformation properties */
2662ca3d3a14SMatthew G. Knepley     if (Nc != cdim) continue;
2663ca3d3a14SMatthew G. Knepley     for (p = pStart; p < pEnd; ++p) {
26649566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(s, p, f, &dof));
2665ca3d3a14SMatthew G. Knepley       if (!dof) continue;
26669566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetFieldDof(ts, p, f, PetscSqr(cdim)));
26679566063dSJacob Faibussowitsch       PetscCall(PetscSectionAddDof(ts, p, PetscSqr(cdim)));
2668ca3d3a14SMatthew G. Knepley     }
2669ca3d3a14SMatthew G. Knepley   }
26709566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(ts));
26719566063dSJacob Faibussowitsch   PetscCall(DMCreateLocalVector(dm->transformDM, &dm->transform));
26729566063dSJacob Faibussowitsch   PetscCall(VecGetArray(dm->transform, &ta));
2673ca3d3a14SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
2674ca3d3a14SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
26759566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof));
2676ca3d3a14SMatthew G. Knepley       if (dof) {
2677ca3d3a14SMatthew G. Knepley         PetscReal          x[3] = {0.0, 0.0, 0.0};
2678ca3d3a14SMatthew G. Knepley         PetscScalar       *tva;
2679ca3d3a14SMatthew G. Knepley         const PetscScalar *A;
2680ca3d3a14SMatthew G. Knepley 
2681ca3d3a14SMatthew G. Knepley         /* TODO Get quadrature point for this dual basis vector for coordinate */
26829566063dSJacob Faibussowitsch         PetscCall((*dm->transformGetMatrix)(dm, x, PETSC_TRUE, &A, dm->transformCtx));
26839566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRef(dm->transformDM, p, f, ta, (void *)&tva));
26849566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(tva, A, PetscSqr(cdim)));
2685ca3d3a14SMatthew G. Knepley       }
2686ca3d3a14SMatthew G. Knepley     }
2687ca3d3a14SMatthew G. Knepley   }
26889566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(dm->transform, &ta));
26893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2690ca3d3a14SMatthew G. Knepley }
2691ca3d3a14SMatthew G. Knepley 
2692d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyTransform(DM dm, DM newdm)
2693d71ae5a4SJacob Faibussowitsch {
2694ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2695ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2696ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(newdm, DM_CLASSID, 2);
2697ca3d3a14SMatthew G. Knepley   newdm->transformCtx       = dm->transformCtx;
2698ca3d3a14SMatthew G. Knepley   newdm->transformSetUp     = dm->transformSetUp;
2699ca3d3a14SMatthew G. Knepley   newdm->transformDestroy   = NULL;
2700ca3d3a14SMatthew G. Knepley   newdm->transformGetMatrix = dm->transformGetMatrix;
27019566063dSJacob Faibussowitsch   if (newdm->transformSetUp) PetscCall(DMConstructBasisTransform_Internal(newdm));
27023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2703ca3d3a14SMatthew G. Knepley }
2704ca3d3a14SMatthew G. Knepley 
2705bb9467b5SJed Brown /*@C
2706bb7acecfSBarry Smith   DMGlobalToLocalHookAdd - adds a callback to be run when `DMGlobalToLocal()` is called
2707baf369e7SPeter Brune 
270820f4b53cSBarry Smith   Logically Collective
2709baf369e7SPeter Brune 
27104165533cSJose E. Roman   Input Parameters:
2711bb7acecfSBarry Smith + dm        - the `DM`
2712bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMGlobalToLocalBegin()`
2713bb7acecfSBarry Smith . endhook   - function to run after `DMGlobalToLocalEnd()` has completed
271420f4b53cSBarry Smith - ctx       - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2715baf369e7SPeter Brune 
271620f4b53cSBarry Smith   Calling sequence of `beginhook`:
2717a4e35b19SJacob Faibussowitsch + dm   - global `DM`
2718baf369e7SPeter Brune . g    - global vector
2719baf369e7SPeter Brune . mode - mode
2720baf369e7SPeter Brune . l    - local vector
2721baf369e7SPeter Brune - ctx  - optional user-defined function context
2722baf369e7SPeter Brune 
272320f4b53cSBarry Smith   Calling sequence of `endhook`:
2724a4e35b19SJacob Faibussowitsch + dm   - global `DM`
2725a4e35b19SJacob Faibussowitsch . g    - global vector
2726a4e35b19SJacob Faibussowitsch . mode - mode
2727a4e35b19SJacob Faibussowitsch . l    - local vector
2728baf369e7SPeter Brune - ctx  - optional user-defined function context
2729baf369e7SPeter Brune 
2730baf369e7SPeter Brune   Level: advanced
2731baf369e7SPeter Brune 
2732bb7acecfSBarry Smith   Note:
2733bb7acecfSBarry Smith   The hook may be used to provide, for example, values that represent boundary conditions in the local vectors that do not exist on the global vector.
2734bb7acecfSBarry Smith 
27351cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocal()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2736baf369e7SPeter Brune @*/
2737a4e35b19SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), PetscErrorCode (*endhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), void *ctx)
2738d71ae5a4SJacob Faibussowitsch {
2739baf369e7SPeter Brune   DMGlobalToLocalHookLink link, *p;
2740baf369e7SPeter Brune 
2741baf369e7SPeter Brune   PetscFunctionBegin;
2742baf369e7SPeter Brune   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2743baf369e7SPeter Brune   for (p = &dm->gtolhook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */
27449566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
2745baf369e7SPeter Brune   link->beginhook = beginhook;
2746baf369e7SPeter Brune   link->endhook   = endhook;
2747baf369e7SPeter Brune   link->ctx       = ctx;
27480298fd71SBarry Smith   link->next      = NULL;
2749baf369e7SPeter Brune   *p              = link;
27503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2751baf369e7SPeter Brune }
2752baf369e7SPeter Brune 
2753d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGlobalToLocalHook_Constraints(DM dm, Vec g, InsertMode mode, Vec l, void *ctx)
2754d71ae5a4SJacob Faibussowitsch {
27554c274da1SToby Isaac   Mat          cMat;
275679769bd5SJed Brown   Vec          cVec, cBias;
27574c274da1SToby Isaac   PetscSection section, cSec;
27584c274da1SToby Isaac   PetscInt     pStart, pEnd, p, dof;
27594c274da1SToby Isaac 
27604c274da1SToby Isaac   PetscFunctionBegin;
2761a4e35b19SJacob Faibussowitsch   (void)g;
2762a4e35b19SJacob Faibussowitsch   (void)ctx;
27634c274da1SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
27649566063dSJacob Faibussowitsch   PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, &cBias));
27654c274da1SToby Isaac   if (cMat && (mode == INSERT_VALUES || mode == INSERT_ALL_VALUES || mode == INSERT_BC_VALUES)) {
27665db9a05bSToby Isaac     PetscInt nRows;
27675db9a05bSToby Isaac 
27689566063dSJacob Faibussowitsch     PetscCall(MatGetSize(cMat, &nRows, NULL));
27693ba16761SJacob Faibussowitsch     if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS);
27709566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
27719566063dSJacob Faibussowitsch     PetscCall(MatCreateVecs(cMat, NULL, &cVec));
27729566063dSJacob Faibussowitsch     PetscCall(MatMult(cMat, l, cVec));
27739566063dSJacob Faibussowitsch     if (cBias) PetscCall(VecAXPY(cVec, 1., cBias));
27749566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd));
27754c274da1SToby Isaac     for (p = pStart; p < pEnd; p++) {
27769566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(cSec, p, &dof));
27774c274da1SToby Isaac       if (dof) {
27784c274da1SToby Isaac         PetscScalar *vals;
27799566063dSJacob Faibussowitsch         PetscCall(VecGetValuesSection(cVec, cSec, p, &vals));
27809566063dSJacob Faibussowitsch         PetscCall(VecSetValuesSection(l, section, p, vals, INSERT_ALL_VALUES));
27814c274da1SToby Isaac       }
27824c274da1SToby Isaac     }
27839566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&cVec));
27844c274da1SToby Isaac   }
27853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27864c274da1SToby Isaac }
27874c274da1SToby Isaac 
278847c6ae99SBarry Smith /*@
278901729b5cSPatrick Sanan   DMGlobalToLocal - update local vectors from global vector
279001729b5cSPatrick Sanan 
279120f4b53cSBarry Smith   Neighbor-wise Collective
279201729b5cSPatrick Sanan 
279301729b5cSPatrick Sanan   Input Parameters:
2794bb7acecfSBarry Smith + dm   - the `DM` object
279501729b5cSPatrick Sanan . g    - the global vector
2796bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES`
279701729b5cSPatrick Sanan - l    - the local vector
279801729b5cSPatrick Sanan 
279920f4b53cSBarry Smith   Level: beginner
280020f4b53cSBarry Smith 
280101729b5cSPatrick Sanan   Notes:
2802bb7acecfSBarry Smith   The communication involved in this update can be overlapped with computation by instead using
2803bb7acecfSBarry Smith   `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()`.
2804bb7acecfSBarry Smith 
2805bb7acecfSBarry Smith   `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process.
280601729b5cSPatrick Sanan 
28071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocalHookAdd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`,
280860225df5SJacob Faibussowitsch           `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`,
2809bb7acecfSBarry Smith           `DMGlobalToLocalBegin()` `DMGlobalToLocalEnd()`
281001729b5cSPatrick Sanan @*/
2811d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocal(DM dm, Vec g, InsertMode mode, Vec l)
2812d71ae5a4SJacob Faibussowitsch {
281301729b5cSPatrick Sanan   PetscFunctionBegin;
28149566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, g, mode, l));
28159566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, g, mode, l));
28163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
281701729b5cSPatrick Sanan }
281801729b5cSPatrick Sanan 
281901729b5cSPatrick Sanan /*@
282047c6ae99SBarry Smith   DMGlobalToLocalBegin - Begins updating local vectors from global vector
282147c6ae99SBarry Smith 
282220f4b53cSBarry Smith   Neighbor-wise Collective
282347c6ae99SBarry Smith 
282447c6ae99SBarry Smith   Input Parameters:
2825bb7acecfSBarry Smith + dm   - the `DM` object
282647c6ae99SBarry Smith . g    - the global vector
2827bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES`
282847c6ae99SBarry Smith - l    - the local vector
282947c6ae99SBarry Smith 
283001729b5cSPatrick Sanan   Level: intermediate
283147c6ae99SBarry Smith 
2832bb7acecfSBarry Smith   Notes:
2833bb7acecfSBarry Smith   The operation is completed with `DMGlobalToLocalEnd()`
2834bb7acecfSBarry Smith 
2835bb7acecfSBarry Smith   One can perform local computations between the `DMGlobalToLocalBegin()` and  `DMGlobalToLocalEnd()` to overlap communication and computation
2836bb7acecfSBarry Smith 
2837bb7acecfSBarry Smith   `DMGlobalToLocal()` is a short form of  `DMGlobalToLocalBegin()` and  `DMGlobalToLocalEnd()`
2838bb7acecfSBarry Smith 
2839bb7acecfSBarry Smith   `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process.
2840bb7acecfSBarry Smith 
284160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`
284247c6ae99SBarry Smith @*/
2843d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l)
2844d71ae5a4SJacob Faibussowitsch {
28457128ae9fSMatthew G Knepley   PetscSF                 sf;
2846baf369e7SPeter Brune   DMGlobalToLocalHookLink link;
284747c6ae99SBarry Smith 
284847c6ae99SBarry Smith   PetscFunctionBegin;
2849171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2850baf369e7SPeter Brune   for (link = dm->gtolhook; link; link = link->next) {
28511baa6e33SBarry Smith     if (link->beginhook) PetscCall((*link->beginhook)(dm, g, mode, l, link->ctx));
2852baf369e7SPeter Brune   }
28539566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
28547128ae9fSMatthew G Knepley   if (sf) {
2855ae5cfb4aSMatthew G. Knepley     const PetscScalar *gArray;
2856ae5cfb4aSMatthew G. Knepley     PetscScalar       *lArray;
2857d0295fc0SJunchao Zhang     PetscMemType       lmtype, gmtype;
28587128ae9fSMatthew G Knepley 
28597a8be351SBarry Smith     PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode);
28609566063dSJacob Faibussowitsch     PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype));
28619566063dSJacob Faibussowitsch     PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype));
28629566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastWithMemTypeBegin(sf, MPIU_SCALAR, gmtype, gArray, lmtype, lArray, MPI_REPLACE));
28639566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayAndMemType(l, &lArray));
28649566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayReadAndMemType(g, &gArray));
28657128ae9fSMatthew G Knepley   } else {
2866fa1e479aSStefano Zampini     PetscUseTypeMethod(dm, globaltolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
28677128ae9fSMatthew G Knepley   }
28683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
286947c6ae99SBarry Smith }
287047c6ae99SBarry Smith 
287147c6ae99SBarry Smith /*@
287247c6ae99SBarry Smith   DMGlobalToLocalEnd - Ends updating local vectors from global vector
287347c6ae99SBarry Smith 
287420f4b53cSBarry Smith   Neighbor-wise Collective
287547c6ae99SBarry Smith 
287647c6ae99SBarry Smith   Input Parameters:
2877bb7acecfSBarry Smith + dm   - the `DM` object
287847c6ae99SBarry Smith . g    - the global vector
2879bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES`
288047c6ae99SBarry Smith - l    - the local vector
288147c6ae99SBarry Smith 
288201729b5cSPatrick Sanan   Level: intermediate
288347c6ae99SBarry Smith 
2884bb7acecfSBarry Smith   Note:
2885bb7acecfSBarry Smith   See `DMGlobalToLocalBegin()` for details.
2886bb7acecfSBarry Smith 
288760225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`
288847c6ae99SBarry Smith @*/
2889d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l)
2890d71ae5a4SJacob Faibussowitsch {
28917128ae9fSMatthew G Knepley   PetscSF                 sf;
2892ae5cfb4aSMatthew G. Knepley   const PetscScalar      *gArray;
2893ae5cfb4aSMatthew G. Knepley   PetscScalar            *lArray;
2894ca3d3a14SMatthew G. Knepley   PetscBool               transform;
2895baf369e7SPeter Brune   DMGlobalToLocalHookLink link;
2896d0295fc0SJunchao Zhang   PetscMemType            lmtype, gmtype;
289747c6ae99SBarry Smith 
289847c6ae99SBarry Smith   PetscFunctionBegin;
2899171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
29009566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
29019566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
29027128ae9fSMatthew G Knepley   if (sf) {
29037a8be351SBarry Smith     PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode);
29047128ae9fSMatthew G Knepley 
29059566063dSJacob Faibussowitsch     PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype));
29069566063dSJacob Faibussowitsch     PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype));
29079566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, gArray, lArray, MPI_REPLACE));
29089566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayAndMemType(l, &lArray));
29099566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayReadAndMemType(g, &gArray));
29109566063dSJacob Faibussowitsch     if (transform) PetscCall(DMPlexGlobalToLocalBasis(dm, l));
29117128ae9fSMatthew G Knepley   } else {
2912fa1e479aSStefano Zampini     PetscUseTypeMethod(dm, globaltolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
29137128ae9fSMatthew G Knepley   }
29149566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalHook_Constraints(dm, g, mode, l, NULL));
2915baf369e7SPeter Brune   for (link = dm->gtolhook; link; link = link->next) {
29169566063dSJacob Faibussowitsch     if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx));
2917baf369e7SPeter Brune   }
29183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
291947c6ae99SBarry Smith }
292047c6ae99SBarry Smith 
2921d4d07f1eSToby Isaac /*@C
2922d4d07f1eSToby Isaac   DMLocalToGlobalHookAdd - adds a callback to be run when a local to global is called
2923d4d07f1eSToby Isaac 
292420f4b53cSBarry Smith   Logically Collective
2925d4d07f1eSToby Isaac 
29264165533cSJose E. Roman   Input Parameters:
2927bb7acecfSBarry Smith + dm        - the `DM`
2928bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMLocalToGlobalBegin()`
2929bb7acecfSBarry Smith . endhook   - function to run after `DMLocalToGlobalEnd()` has completed
293020f4b53cSBarry Smith - ctx       - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2931d4d07f1eSToby Isaac 
293220f4b53cSBarry Smith   Calling sequence of `beginhook`:
2933a4e35b19SJacob Faibussowitsch + global - global `DM`
2934d4d07f1eSToby Isaac . l      - local vector
2935d4d07f1eSToby Isaac . mode   - mode
2936d4d07f1eSToby Isaac . g      - global vector
2937d4d07f1eSToby Isaac - ctx    - optional user-defined function context
2938d4d07f1eSToby Isaac 
293920f4b53cSBarry Smith   Calling sequence of `endhook`:
2940bb7acecfSBarry Smith + global - global `DM`
2941d4d07f1eSToby Isaac . l      - local vector
2942d4d07f1eSToby Isaac . mode   - mode
2943d4d07f1eSToby Isaac . g      - global vector
2944d4d07f1eSToby Isaac - ctx    - optional user-defined function context
2945d4d07f1eSToby Isaac 
2946d4d07f1eSToby Isaac   Level: advanced
2947d4d07f1eSToby Isaac 
29481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMRefineHookAdd()`, `DMGlobalToLocalHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2949d4d07f1eSToby Isaac @*/
2950a4e35b19SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), PetscErrorCode (*endhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), void *ctx)
2951d71ae5a4SJacob Faibussowitsch {
2952d4d07f1eSToby Isaac   DMLocalToGlobalHookLink link, *p;
2953d4d07f1eSToby Isaac 
2954d4d07f1eSToby Isaac   PetscFunctionBegin;
2955d4d07f1eSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2956d4d07f1eSToby Isaac   for (p = &dm->ltoghook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */
29579566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
2958d4d07f1eSToby Isaac   link->beginhook = beginhook;
2959d4d07f1eSToby Isaac   link->endhook   = endhook;
2960d4d07f1eSToby Isaac   link->ctx       = ctx;
2961d4d07f1eSToby Isaac   link->next      = NULL;
2962d4d07f1eSToby Isaac   *p              = link;
29633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2964d4d07f1eSToby Isaac }
2965d4d07f1eSToby Isaac 
2966d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMLocalToGlobalHook_Constraints(DM dm, Vec l, InsertMode mode, Vec g, void *ctx)
2967d71ae5a4SJacob Faibussowitsch {
29684c274da1SToby Isaac   PetscFunctionBegin;
2969a4e35b19SJacob Faibussowitsch   (void)g;
2970a4e35b19SJacob Faibussowitsch   (void)ctx;
29714c274da1SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
29722b6b7d09SToby Isaac   if (mode == ADD_VALUES || mode == ADD_ALL_VALUES || mode == ADD_BC_VALUES) {
29732b6b7d09SToby Isaac     Mat          cMat;
29742b6b7d09SToby Isaac     Vec          cVec;
29755db9a05bSToby Isaac     PetscInt     nRows;
29762b6b7d09SToby Isaac     PetscSection section, cSec;
29772b6b7d09SToby Isaac     PetscInt     pStart, pEnd, p, dof;
29782b6b7d09SToby Isaac 
29792b6b7d09SToby Isaac     PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, NULL));
29802b6b7d09SToby Isaac     if (!cMat) PetscFunctionReturn(PETSC_SUCCESS);
29815db9a05bSToby Isaac 
29829566063dSJacob Faibussowitsch     PetscCall(MatGetSize(cMat, &nRows, NULL));
29833ba16761SJacob Faibussowitsch     if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS);
29849566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
29859566063dSJacob Faibussowitsch     PetscCall(MatCreateVecs(cMat, NULL, &cVec));
29869566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd));
29874c274da1SToby Isaac     for (p = pStart; p < pEnd; p++) {
29889566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(cSec, p, &dof));
29894c274da1SToby Isaac       if (dof) {
29904c274da1SToby Isaac         PetscInt     d;
29914c274da1SToby Isaac         PetscScalar *vals;
29929566063dSJacob Faibussowitsch         PetscCall(VecGetValuesSection(l, section, p, &vals));
29939566063dSJacob Faibussowitsch         PetscCall(VecSetValuesSection(cVec, cSec, p, vals, mode));
29944c274da1SToby Isaac         /* for this to be the true transpose, we have to zero the values that
29954c274da1SToby Isaac          * we just extracted */
2996ad540459SPierre Jolivet         for (d = 0; d < dof; d++) vals[d] = 0.;
29974c274da1SToby Isaac       }
29984c274da1SToby Isaac     }
29999566063dSJacob Faibussowitsch     PetscCall(MatMultTransposeAdd(cMat, cVec, l, l));
30009566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&cVec));
30014c274da1SToby Isaac   }
30023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30034c274da1SToby Isaac }
300401729b5cSPatrick Sanan /*@
300501729b5cSPatrick Sanan   DMLocalToGlobal - updates global vectors from local vectors
300601729b5cSPatrick Sanan 
300720f4b53cSBarry Smith   Neighbor-wise Collective
300801729b5cSPatrick Sanan 
300901729b5cSPatrick Sanan   Input Parameters:
3010bb7acecfSBarry Smith + dm   - the `DM` object
301101729b5cSPatrick Sanan . l    - the local vector
3012bb7acecfSBarry Smith . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point.
301301729b5cSPatrick Sanan - g    - the global vector
301401729b5cSPatrick Sanan 
301520f4b53cSBarry Smith   Level: beginner
301620f4b53cSBarry Smith 
301701729b5cSPatrick Sanan   Notes:
301801729b5cSPatrick Sanan   The communication involved in this update can be overlapped with computation by using
3019bb7acecfSBarry Smith   `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()`.
302001729b5cSPatrick Sanan 
3021bb7acecfSBarry Smith   In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation.
3022bb7acecfSBarry Smith 
3023bb7acecfSBarry Smith   `INSERT_VALUES` is not supported for `DMDA`; in that case simply compute the values directly into a global vector instead of a local one.
3024bb7acecfSBarry Smith 
3025bb7acecfSBarry Smith   Use `DMLocalToGlobalHookAdd()` to add additional operations that are performed on the data during the update process
302601729b5cSPatrick Sanan 
30271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`, `DMLocalToGlobalHookAdd()`, `DMGlobaToLocallHookAdd()`
302801729b5cSPatrick Sanan @*/
3029d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobal(DM dm, Vec l, InsertMode mode, Vec g)
3030d71ae5a4SJacob Faibussowitsch {
303101729b5cSPatrick Sanan   PetscFunctionBegin;
30329566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalBegin(dm, l, mode, g));
30339566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalEnd(dm, l, mode, g));
30343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
303501729b5cSPatrick Sanan }
30364c274da1SToby Isaac 
303747c6ae99SBarry Smith /*@
303801729b5cSPatrick Sanan   DMLocalToGlobalBegin - begins updating global vectors from local vectors
30399a42bb27SBarry Smith 
304020f4b53cSBarry Smith   Neighbor-wise Collective
30419a42bb27SBarry Smith 
30429a42bb27SBarry Smith   Input Parameters:
3043bb7acecfSBarry Smith + dm   - the `DM` object
3044f6813fd5SJed Brown . l    - the local vector
3045aa624791SPierre Jolivet . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point.
30461eb28f2eSBarry Smith - g    - the global vector
30479a42bb27SBarry Smith 
304820f4b53cSBarry Smith   Level: intermediate
304920f4b53cSBarry Smith 
305095452b02SPatrick Sanan   Notes:
3051bb7acecfSBarry Smith   In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation.
3052bb7acecfSBarry Smith 
3053bb7acecfSBarry Smith   `INSERT_VALUES is` not supported for `DMDA`, in that case simply compute the values directly into a global vector instead of a local one.
3054bb7acecfSBarry Smith 
3055bb7acecfSBarry Smith   Use `DMLocalToGlobalEnd()` to complete the communication process.
3056bb7acecfSBarry Smith 
3057bb7acecfSBarry Smith   `DMLocalToGlobal()` is a short form of  `DMLocalToGlobalBegin()` and  `DMLocalToGlobalEnd()`
3058bb7acecfSBarry Smith 
3059bb7acecfSBarry Smith   `DMLocalToGlobalHookAdd()` may be used to provide additional operations that are performed during the update process.
30609a42bb27SBarry Smith 
30611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`
30629a42bb27SBarry Smith @*/
3063d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalBegin(DM dm, Vec l, InsertMode mode, Vec g)
3064d71ae5a4SJacob Faibussowitsch {
30657128ae9fSMatthew G Knepley   PetscSF                 sf;
306684330215SMatthew G. Knepley   PetscSection            s, gs;
3067d4d07f1eSToby Isaac   DMLocalToGlobalHookLink link;
3068ca3d3a14SMatthew G. Knepley   Vec                     tmpl;
3069ae5cfb4aSMatthew G. Knepley   const PetscScalar      *lArray;
3070ae5cfb4aSMatthew G. Knepley   PetscScalar            *gArray;
3071fa88e482SJed Brown   PetscBool               isInsert, transform, l_inplace = PETSC_FALSE, g_inplace = PETSC_FALSE;
3072d0295fc0SJunchao Zhang   PetscMemType            lmtype = PETSC_MEMTYPE_HOST, gmtype = PETSC_MEMTYPE_HOST;
30739a42bb27SBarry Smith 
30749a42bb27SBarry Smith   PetscFunctionBegin;
3075171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3076d4d07f1eSToby Isaac   for (link = dm->ltoghook; link; link = link->next) {
30771baa6e33SBarry Smith     if (link->beginhook) PetscCall((*link->beginhook)(dm, l, mode, g, link->ctx));
3078d4d07f1eSToby Isaac   }
30799566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalHook_Constraints(dm, l, mode, g, NULL));
30809566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
30819566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
30827128ae9fSMatthew G Knepley   switch (mode) {
30837128ae9fSMatthew G Knepley   case INSERT_VALUES:
30847128ae9fSMatthew G Knepley   case INSERT_ALL_VALUES:
3085d71ae5a4SJacob Faibussowitsch   case INSERT_BC_VALUES:
3086d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_TRUE;
3087d71ae5a4SJacob Faibussowitsch     break;
30887128ae9fSMatthew G Knepley   case ADD_VALUES:
30897128ae9fSMatthew G Knepley   case ADD_ALL_VALUES:
3090d71ae5a4SJacob Faibussowitsch   case ADD_BC_VALUES:
3091d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_FALSE;
3092d71ae5a4SJacob Faibussowitsch     break;
3093d71ae5a4SJacob Faibussowitsch   default:
3094d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode);
30957128ae9fSMatthew G Knepley   }
3096ca3d3a14SMatthew G. Knepley   if ((sf && !isInsert) || (s && isInsert)) {
30979566063dSJacob Faibussowitsch     PetscCall(DMHasBasisTransform(dm, &transform));
3098ca3d3a14SMatthew G. Knepley     if (transform) {
30999566063dSJacob Faibussowitsch       PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
31009566063dSJacob Faibussowitsch       PetscCall(VecCopy(l, tmpl));
31019566063dSJacob Faibussowitsch       PetscCall(DMPlexLocalToGlobalBasis(dm, tmpl));
31029566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(tmpl, &lArray));
3103fa88e482SJed Brown     } else if (isInsert) {
31049566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(l, &lArray));
3105fa88e482SJed Brown     } else {
31069566063dSJacob Faibussowitsch       PetscCall(VecGetArrayReadAndMemType(l, &lArray, &lmtype));
3107fa88e482SJed Brown       l_inplace = PETSC_TRUE;
3108ca3d3a14SMatthew G. Knepley     }
3109fa88e482SJed Brown     if (s && isInsert) {
31109566063dSJacob Faibussowitsch       PetscCall(VecGetArray(g, &gArray));
3111fa88e482SJed Brown     } else {
31129566063dSJacob Faibussowitsch       PetscCall(VecGetArrayAndMemType(g, &gArray, &gmtype));
3113fa88e482SJed Brown       g_inplace = PETSC_TRUE;
3114fa88e482SJed Brown     }
3115ca3d3a14SMatthew G. Knepley     if (sf && !isInsert) {
31169566063dSJacob Faibussowitsch       PetscCall(PetscSFReduceWithMemTypeBegin(sf, MPIU_SCALAR, lmtype, lArray, gmtype, gArray, MPIU_SUM));
311784330215SMatthew G. Knepley     } else if (s && isInsert) {
311884330215SMatthew G. Knepley       PetscInt gStart, pStart, pEnd, p;
311984330215SMatthew G. Knepley 
31209566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalSection(dm, &gs));
31219566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
31229566063dSJacob Faibussowitsch       PetscCall(VecGetOwnershipRange(g, &gStart, NULL));
312384330215SMatthew G. Knepley       for (p = pStart; p < pEnd; ++p) {
3124b3b16f48SMatthew G. Knepley         PetscInt dof, gdof, cdof, gcdof, off, goff, d, e;
312584330215SMatthew G. Knepley 
31269566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(s, p, &dof));
31279566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(gs, p, &gdof));
31289566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintDof(s, p, &cdof));
31299566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintDof(gs, p, &gcdof));
31309566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(s, p, &off));
31319566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(gs, p, &goff));
3132b3b16f48SMatthew G. Knepley         /* Ignore off-process data and points with no global data */
313303442857SMatthew G. Knepley         if (!gdof || goff < 0) continue;
31347a8be351SBarry Smith         PetscCheck(dof == gdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof);
3135b3b16f48SMatthew G. Knepley         /* If no constraints are enforced in the global vector */
3136b3b16f48SMatthew G. Knepley         if (!gcdof) {
313784330215SMatthew G. Knepley           for (d = 0; d < dof; ++d) gArray[goff - gStart + d] = lArray[off + d];
3138b3b16f48SMatthew G. Knepley           /* If constraints are enforced in the global vector */
3139b3b16f48SMatthew G. Knepley         } else if (cdof == gcdof) {
314084330215SMatthew G. Knepley           const PetscInt *cdofs;
314184330215SMatthew G. Knepley           PetscInt        cind = 0;
314284330215SMatthew G. Knepley 
31439566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetConstraintIndices(s, p, &cdofs));
3144b3b16f48SMatthew G. Knepley           for (d = 0, e = 0; d < dof; ++d) {
31459371c9d4SSatish Balay             if ((cind < cdof) && (d == cdofs[cind])) {
31469371c9d4SSatish Balay               ++cind;
31479371c9d4SSatish Balay               continue;
31489371c9d4SSatish Balay             }
3149b3b16f48SMatthew G. Knepley             gArray[goff - gStart + e++] = lArray[off + d];
315084330215SMatthew G. Knepley           }
31517a8be351SBarry Smith         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof);
315284330215SMatthew G. Knepley       }
3153ca3d3a14SMatthew G. Knepley     }
3154fa88e482SJed Brown     if (g_inplace) {
31559566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayAndMemType(g, &gArray));
3156fa88e482SJed Brown     } else {
31579566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(g, &gArray));
3158fa88e482SJed Brown     }
3159ca3d3a14SMatthew G. Knepley     if (transform) {
31609566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(tmpl, &lArray));
31619566063dSJacob Faibussowitsch       PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
3162fa88e482SJed Brown     } else if (l_inplace) {
31639566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayReadAndMemType(l, &lArray));
3164ca3d3a14SMatthew G. Knepley     } else {
31659566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(l, &lArray));
3166ca3d3a14SMatthew G. Knepley     }
31677128ae9fSMatthew G Knepley   } else {
3168fa1e479aSStefano Zampini     PetscUseTypeMethod(dm, localtoglobalbegin, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g);
31697128ae9fSMatthew G Knepley   }
31703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31719a42bb27SBarry Smith }
31729a42bb27SBarry Smith 
31739a42bb27SBarry Smith /*@
31749a42bb27SBarry Smith   DMLocalToGlobalEnd - updates global vectors from local vectors
317547c6ae99SBarry Smith 
317620f4b53cSBarry Smith   Neighbor-wise Collective
317747c6ae99SBarry Smith 
317847c6ae99SBarry Smith   Input Parameters:
3179bb7acecfSBarry Smith + dm   - the `DM` object
3180f6813fd5SJed Brown . l    - the local vector
3181bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES`
3182f6813fd5SJed Brown - g    - the global vector
318347c6ae99SBarry Smith 
318401729b5cSPatrick Sanan   Level: intermediate
318547c6ae99SBarry Smith 
3186bb7acecfSBarry Smith   Note:
3187bb7acecfSBarry Smith   See `DMLocalToGlobalBegin()` for full details
3188bb7acecfSBarry Smith 
318960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`
319047c6ae99SBarry Smith @*/
3191d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalEnd(DM dm, Vec l, InsertMode mode, Vec g)
3192d71ae5a4SJacob Faibussowitsch {
31937128ae9fSMatthew G Knepley   PetscSF                 sf;
319484330215SMatthew G. Knepley   PetscSection            s;
3195d4d07f1eSToby Isaac   DMLocalToGlobalHookLink link;
3196ca3d3a14SMatthew G. Knepley   PetscBool               isInsert, transform;
319747c6ae99SBarry Smith 
319847c6ae99SBarry Smith   PetscFunctionBegin;
3199171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
32009566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
32019566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
32027128ae9fSMatthew G Knepley   switch (mode) {
32037128ae9fSMatthew G Knepley   case INSERT_VALUES:
3204d71ae5a4SJacob Faibussowitsch   case INSERT_ALL_VALUES:
3205d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_TRUE;
3206d71ae5a4SJacob Faibussowitsch     break;
32077128ae9fSMatthew G Knepley   case ADD_VALUES:
3208d71ae5a4SJacob Faibussowitsch   case ADD_ALL_VALUES:
3209d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_FALSE;
3210d71ae5a4SJacob Faibussowitsch     break;
3211d71ae5a4SJacob Faibussowitsch   default:
3212d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode);
32137128ae9fSMatthew G Knepley   }
321484330215SMatthew G. Knepley   if (sf && !isInsert) {
3215ae5cfb4aSMatthew G. Knepley     const PetscScalar *lArray;
3216ae5cfb4aSMatthew G. Knepley     PetscScalar       *gArray;
3217ca3d3a14SMatthew G. Knepley     Vec                tmpl;
321884330215SMatthew G. Knepley 
32199566063dSJacob Faibussowitsch     PetscCall(DMHasBasisTransform(dm, &transform));
3220ca3d3a14SMatthew G. Knepley     if (transform) {
32219566063dSJacob Faibussowitsch       PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
32229566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(tmpl, &lArray));
3223ca3d3a14SMatthew G. Knepley     } else {
32249566063dSJacob Faibussowitsch       PetscCall(VecGetArrayReadAndMemType(l, &lArray, NULL));
3225ca3d3a14SMatthew G. Knepley     }
32269566063dSJacob Faibussowitsch     PetscCall(VecGetArrayAndMemType(g, &gArray, NULL));
32279566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceEnd(sf, MPIU_SCALAR, lArray, gArray, MPIU_SUM));
3228ca3d3a14SMatthew G. Knepley     if (transform) {
32299566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(tmpl, &lArray));
32309566063dSJacob Faibussowitsch       PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
3231ca3d3a14SMatthew G. Knepley     } else {
32329566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayReadAndMemType(l, &lArray));
3233ca3d3a14SMatthew G. Knepley     }
32349566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayAndMemType(g, &gArray));
323584330215SMatthew G. Knepley   } else if (s && isInsert) {
32367128ae9fSMatthew G Knepley   } else {
3237fa1e479aSStefano Zampini     PetscUseTypeMethod(dm, localtoglobalend, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g);
32387128ae9fSMatthew G Knepley   }
3239d4d07f1eSToby Isaac   for (link = dm->ltoghook; link; link = link->next) {
32409566063dSJacob Faibussowitsch     if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx));
3241d4d07f1eSToby Isaac   }
32423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
324347c6ae99SBarry Smith }
324447c6ae99SBarry Smith 
3245f089877aSRichard Tran Mills /*@
3246a4e35b19SJacob Faibussowitsch   DMLocalToLocalBegin - Begins the process of mapping values from a local vector (that include
3247a4e35b19SJacob Faibussowitsch   ghost points that contain irrelevant values) to another local vector where the ghost points
3248a4e35b19SJacob Faibussowitsch   in the second are set correctly from values on other MPI ranks.
3249f089877aSRichard Tran Mills 
325020f4b53cSBarry Smith   Neighbor-wise Collective
3251f089877aSRichard Tran Mills 
3252f089877aSRichard Tran Mills   Input Parameters:
3253bb7acecfSBarry Smith + dm   - the `DM` object
3254bc0a1609SRichard Tran Mills . g    - the original local vector
3255bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES`
3256f089877aSRichard Tran Mills 
3257bc0a1609SRichard Tran Mills   Output Parameter:
3258bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values
3259f089877aSRichard Tran Mills 
3260f089877aSRichard Tran Mills   Level: intermediate
3261f089877aSRichard Tran Mills 
326273ff1848SBarry Smith   Note:
3263a4e35b19SJacob Faibussowitsch   Must be followed by `DMLocalToLocalEnd()`.
3264a4e35b19SJacob Faibussowitsch 
326560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`
3266f089877aSRichard Tran Mills @*/
3267d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l)
3268d71ae5a4SJacob Faibussowitsch {
3269f089877aSRichard Tran Mills   PetscFunctionBegin;
3270f089877aSRichard Tran Mills   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
32719f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(g, VEC_CLASSID, 2);
32729f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(l, VEC_CLASSID, 4);
32739f4ada15SMatthew G. Knepley   PetscUseTypeMethod(dm, localtolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
32743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3275f089877aSRichard Tran Mills }
3276f089877aSRichard Tran Mills 
3277f089877aSRichard Tran Mills /*@
3278bb7acecfSBarry Smith   DMLocalToLocalEnd - Maps from a local vector to another local vector where the ghost
3279bb7acecfSBarry Smith   points in the second are set correctly. Must be preceded by `DMLocalToLocalBegin()`.
3280f089877aSRichard Tran Mills 
328120f4b53cSBarry Smith   Neighbor-wise Collective
3282f089877aSRichard Tran Mills 
3283f089877aSRichard Tran Mills   Input Parameters:
328460225df5SJacob Faibussowitsch + dm   - the `DM` object
3285bc0a1609SRichard Tran Mills . g    - the original local vector
3286bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES`
3287f089877aSRichard Tran Mills 
3288bc0a1609SRichard Tran Mills   Output Parameter:
3289bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values
3290f089877aSRichard Tran Mills 
3291f089877aSRichard Tran Mills   Level: intermediate
3292f089877aSRichard Tran Mills 
329360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`
3294f089877aSRichard Tran Mills @*/
3295d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l)
3296d71ae5a4SJacob Faibussowitsch {
3297f089877aSRichard Tran Mills   PetscFunctionBegin;
3298f089877aSRichard Tran Mills   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
32999f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(g, VEC_CLASSID, 2);
33009f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(l, VEC_CLASSID, 4);
33019f4ada15SMatthew G. Knepley   PetscUseTypeMethod(dm, localtolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
33023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3303f089877aSRichard Tran Mills }
3304f089877aSRichard Tran Mills 
330547c6ae99SBarry Smith /*@
3306bb7acecfSBarry Smith   DMCoarsen - Coarsens a `DM` object using a standard, non-adaptive coarsening of the underlying mesh
330747c6ae99SBarry Smith 
330820f4b53cSBarry Smith   Collective
330947c6ae99SBarry Smith 
3310d8d19677SJose E. Roman   Input Parameters:
3311bb7acecfSBarry Smith + dm   - the `DM` object
331220f4b53cSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`)
331347c6ae99SBarry Smith 
331447c6ae99SBarry Smith   Output Parameter:
3315bb7acecfSBarry Smith . dmc - the coarsened `DM`
331647c6ae99SBarry Smith 
331747c6ae99SBarry Smith   Level: developer
331847c6ae99SBarry Smith 
331973ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`,
332073ff1848SBarry Smith           `DMCoarsenHookAdd()`, `DMCoarsenHookRemove()`
332147c6ae99SBarry Smith @*/
3322d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsen(DM dm, MPI_Comm comm, DM *dmc)
3323d71ae5a4SJacob Faibussowitsch {
3324b17ce1afSJed Brown   DMCoarsenHookLink link;
332547c6ae99SBarry Smith 
332647c6ae99SBarry Smith   PetscFunctionBegin;
3327171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
33289566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_Coarsen, dm, 0, 0, 0));
3329dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, coarsen, comm, dmc);
3330b9d85ea2SLisandro Dalcin   if (*dmc) {
3331a3574896SRichard Tran Mills     (*dmc)->bind_below = dm->bind_below; /* Propagate this from parent DM; otherwise -dm_bind_below will be useless for multigrid cases. */
33329566063dSJacob Faibussowitsch     PetscCall(DMSetCoarseDM(dm, *dmc));
333343842a1eSJed Brown     (*dmc)->ops->creatematrix = dm->ops->creatematrix;
33349566063dSJacob Faibussowitsch     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmc));
3335644e2e5bSBarry Smith     (*dmc)->ctx       = dm->ctx;
33360598a293SJed Brown     (*dmc)->levelup   = dm->levelup;
3337656b349aSBarry Smith     (*dmc)->leveldown = dm->leveldown + 1;
33389566063dSJacob Faibussowitsch     PetscCall(DMSetMatType(*dmc, dm->mattype));
3339b17ce1afSJed Brown     for (link = dm->coarsenhook; link; link = link->next) {
33409566063dSJacob Faibussowitsch       if (link->coarsenhook) PetscCall((*link->coarsenhook)(dm, *dmc, link->ctx));
3341b17ce1afSJed Brown     }
3342b9d85ea2SLisandro Dalcin   }
33439566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_Coarsen, dm, 0, 0, 0));
33447a8be351SBarry Smith   PetscCheck(*dmc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "NULL coarse mesh produced");
33453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3346b17ce1afSJed Brown }
3347b17ce1afSJed Brown 
3348bb9467b5SJed Brown /*@C
3349b17ce1afSJed Brown   DMCoarsenHookAdd - adds a callback to be run when restricting a nonlinear problem to the coarse grid
3350b17ce1afSJed Brown 
335120f4b53cSBarry Smith   Logically Collective; No Fortran Support
3352b17ce1afSJed Brown 
33534165533cSJose E. Roman   Input Parameters:
3354bb7acecfSBarry Smith + fine         - `DM` on which to run a hook when restricting to a coarser level
3355b17ce1afSJed Brown . coarsenhook  - function to run when setting up a coarser level
3356bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels (called once per `SNESSolve()`)
335720f4b53cSBarry Smith - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3358b17ce1afSJed Brown 
335920f4b53cSBarry Smith   Calling sequence of `coarsenhook`:
3360bb7acecfSBarry Smith + fine   - fine level `DM`
3361bb7acecfSBarry Smith . coarse - coarse level `DM` to restrict problem to
3362b17ce1afSJed Brown - ctx    - optional user-defined function context
3363b17ce1afSJed Brown 
336420f4b53cSBarry Smith   Calling sequence of `restricthook`:
3365bb7acecfSBarry Smith + fine      - fine level `DM`
3366bb7acecfSBarry Smith . mrestrict - matrix restricting a fine-level solution to the coarse grid, usually the transpose of the interpolation
3367c833c3b5SJed Brown . rscale    - scaling vector for restriction
3368c833c3b5SJed Brown . inject    - matrix restricting by injection
3369b17ce1afSJed Brown . coarse    - coarse level DM to update
3370b17ce1afSJed Brown - ctx       - optional user-defined function context
3371b17ce1afSJed Brown 
3372b17ce1afSJed Brown   Level: advanced
3373b17ce1afSJed Brown 
3374b17ce1afSJed Brown   Notes:
3375bb7acecfSBarry Smith   This function is only needed if auxiliary data, attached to the `DM` with `PetscObjectCompose()`, needs to be set up or passed from the fine `DM` to the coarse `DM`.
3376b17ce1afSJed Brown 
3377b17ce1afSJed Brown   If this function is called multiple times, the hooks will be run in the order they are added.
3378b17ce1afSJed Brown 
3379b17ce1afSJed Brown   In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to
3380bb7acecfSBarry Smith   extract the finest level information from its context (instead of from the `SNES`).
3381b17ce1afSJed Brown 
3382bb7acecfSBarry Smith   The hooks are automatically called by `DMRestrict()`
3383bb7acecfSBarry Smith 
33841cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
3385b17ce1afSJed Brown @*/
3386a4e35b19SJacob Faibussowitsch PetscErrorCode DMCoarsenHookAdd(DM fine, PetscErrorCode (*coarsenhook)(DM fine, DM coarse, void *ctx), PetscErrorCode (*restricthook)(DM fine, Mat mrestrict, Vec rscale, Mat inject, DM coarse, void *ctx), void *ctx)
3387d71ae5a4SJacob Faibussowitsch {
3388b17ce1afSJed Brown   DMCoarsenHookLink link, *p;
3389b17ce1afSJed Brown 
3390b17ce1afSJed Brown   PetscFunctionBegin;
3391b17ce1afSJed Brown   PetscValidHeaderSpecific(fine, DM_CLASSID, 1);
33921e3d8eccSJed Brown   for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
33933ba16761SJacob Faibussowitsch     if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
33941e3d8eccSJed Brown   }
33959566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
3396b17ce1afSJed Brown   link->coarsenhook  = coarsenhook;
3397b17ce1afSJed Brown   link->restricthook = restricthook;
3398b17ce1afSJed Brown   link->ctx          = ctx;
33990298fd71SBarry Smith   link->next         = NULL;
3400b17ce1afSJed Brown   *p                 = link;
34013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3402b17ce1afSJed Brown }
3403b17ce1afSJed Brown 
3404dc822a44SJed Brown /*@C
3405bb7acecfSBarry Smith   DMCoarsenHookRemove - remove a callback set with `DMCoarsenHookAdd()`
3406dc822a44SJed Brown 
340720f4b53cSBarry Smith   Logically Collective; No Fortran Support
3408dc822a44SJed Brown 
34094165533cSJose E. Roman   Input Parameters:
3410bb7acecfSBarry Smith + fine         - `DM` on which to run a hook when restricting to a coarser level
3411dc822a44SJed Brown . coarsenhook  - function to run when setting up a coarser level
3412bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels
341320f4b53cSBarry Smith - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3414dc822a44SJed Brown 
3415dc822a44SJed Brown   Level: advanced
3416dc822a44SJed Brown 
341773ff1848SBarry Smith   Notes:
341873ff1848SBarry Smith   This function does nothing if the `coarsenhook` is not in the list.
341973ff1848SBarry Smith 
342073ff1848SBarry Smith   See `DMCoarsenHookAdd()` for the calling sequence of `coarsenhook` and `restricthook`
3421dc822a44SJed Brown 
34221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
3423dc822a44SJed Brown @*/
3424d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookRemove(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx)
3425d71ae5a4SJacob Faibussowitsch {
3426dc822a44SJed Brown   DMCoarsenHookLink link, *p;
3427dc822a44SJed Brown 
3428dc822a44SJed Brown   PetscFunctionBegin;
3429dc822a44SJed Brown   PetscValidHeaderSpecific(fine, DM_CLASSID, 1);
3430dc822a44SJed Brown   for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Search the list of current hooks */
3431dc822a44SJed Brown     if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) {
3432dc822a44SJed Brown       link = *p;
3433dc822a44SJed Brown       *p   = link->next;
34349566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
3435dc822a44SJed Brown       break;
3436dc822a44SJed Brown     }
3437dc822a44SJed Brown   }
34383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3439dc822a44SJed Brown }
3440dc822a44SJed Brown 
3441b17ce1afSJed Brown /*@
3442bb7acecfSBarry Smith   DMRestrict - restricts user-defined problem data to a coarser `DM` by running hooks registered by `DMCoarsenHookAdd()`
3443b17ce1afSJed Brown 
3444b17ce1afSJed Brown   Collective if any hooks are
3445b17ce1afSJed Brown 
34464165533cSJose E. Roman   Input Parameters:
3447bb7acecfSBarry Smith + fine    - finer `DM` from which the data is obtained
3448bb7acecfSBarry Smith . restrct - restriction matrix, apply using `MatRestrict()`, usually the transpose of the interpolation
3449e91eccc2SStefano Zampini . rscale  - scaling vector for restriction
3450bb7acecfSBarry Smith . inject  - injection matrix, also use `MatRestrict()`
345120f4b53cSBarry Smith - coarse  - coarser `DM` to update
3452b17ce1afSJed Brown 
3453b17ce1afSJed Brown   Level: developer
3454b17ce1afSJed Brown 
345573ff1848SBarry Smith   Developer Note:
3456bb7acecfSBarry Smith   Though this routine is called `DMRestrict()` the hooks are added with `DMCoarsenHookAdd()`, a consistent terminology would be better
3457bb7acecfSBarry Smith 
34581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMInterpolate()`, `DMRefineHookAdd()`
3459b17ce1afSJed Brown @*/
3460d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestrict(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse)
3461d71ae5a4SJacob Faibussowitsch {
3462b17ce1afSJed Brown   DMCoarsenHookLink link;
3463b17ce1afSJed Brown 
3464b17ce1afSJed Brown   PetscFunctionBegin;
3465b17ce1afSJed Brown   for (link = fine->coarsenhook; link; link = link->next) {
34661baa6e33SBarry Smith     if (link->restricthook) PetscCall((*link->restricthook)(fine, restrct, rscale, inject, coarse, link->ctx));
3467b17ce1afSJed Brown   }
34683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
346947c6ae99SBarry Smith }
347047c6ae99SBarry Smith 
3471bb9467b5SJed Brown /*@C
347273ff1848SBarry Smith   DMSubDomainHookAdd - adds a callback to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()`
34735dbd56e3SPeter Brune 
347420f4b53cSBarry Smith   Logically Collective; No Fortran Support
34755dbd56e3SPeter Brune 
34764165533cSJose E. Roman   Input Parameters:
3477bb7acecfSBarry Smith + global       - global `DM`
3478bb7acecfSBarry Smith . ddhook       - function to run to pass data to the decomposition `DM` upon its creation
34795dbd56e3SPeter Brune . restricthook - function to run to update data on block solve (at the beginning of the block solve)
348020f4b53cSBarry Smith - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
34815dbd56e3SPeter Brune 
348220f4b53cSBarry Smith   Calling sequence of `ddhook`:
3483bb7acecfSBarry Smith + global - global `DM`
348473ff1848SBarry Smith . block  - subdomain `DM`
3485ec4806b8SPeter Brune - ctx    - optional user-defined function context
3486ec4806b8SPeter Brune 
348720f4b53cSBarry Smith   Calling sequence of `restricthook`:
3488bb7acecfSBarry Smith + global - global `DM`
348973ff1848SBarry Smith . out    - scatter to the outer (with ghost and overlap points) sub vector
349073ff1848SBarry Smith . in     - scatter to sub vector values only owned locally
349173ff1848SBarry Smith . block  - subdomain `DM`
34925dbd56e3SPeter Brune - ctx    - optional user-defined function context
34935dbd56e3SPeter Brune 
34945dbd56e3SPeter Brune   Level: advanced
34955dbd56e3SPeter Brune 
34965dbd56e3SPeter Brune   Notes:
349773ff1848SBarry Smith   This function can be used if auxiliary data needs to be set up on subdomain `DM`s.
34985dbd56e3SPeter Brune 
34995dbd56e3SPeter Brune   If this function is called multiple times, the hooks will be run in the order they are added.
35005dbd56e3SPeter Brune 
35015dbd56e3SPeter Brune   In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to
3502bb7acecfSBarry Smith   extract the global information from its context (instead of from the `SNES`).
35035dbd56e3SPeter Brune 
350473ff1848SBarry Smith   Developer Note:
350573ff1848SBarry Smith   It is unclear what "block solve" means within the definition of `restricthook`
350673ff1848SBarry Smith 
350773ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`, `DMCreateDomainDecomposition()`
35085dbd56e3SPeter Brune @*/
3509a4e35b19SJacob Faibussowitsch PetscErrorCode DMSubDomainHookAdd(DM global, PetscErrorCode (*ddhook)(DM global, DM block, void *ctx), PetscErrorCode (*restricthook)(DM global, VecScatter out, VecScatter in, DM block, void *ctx), void *ctx)
3510d71ae5a4SJacob Faibussowitsch {
3511be081cd6SPeter Brune   DMSubDomainHookLink link, *p;
35125dbd56e3SPeter Brune 
35135dbd56e3SPeter Brune   PetscFunctionBegin;
35145dbd56e3SPeter Brune   PetscValidHeaderSpecific(global, DM_CLASSID, 1);
3515b3a6b972SJed Brown   for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
35163ba16761SJacob Faibussowitsch     if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
3517b3a6b972SJed Brown   }
35189566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
35195dbd56e3SPeter Brune   link->restricthook = restricthook;
3520be081cd6SPeter Brune   link->ddhook       = ddhook;
35215dbd56e3SPeter Brune   link->ctx          = ctx;
35220298fd71SBarry Smith   link->next         = NULL;
35235dbd56e3SPeter Brune   *p                 = link;
35243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35255dbd56e3SPeter Brune }
35265dbd56e3SPeter Brune 
3527b3a6b972SJed Brown /*@C
352873ff1848SBarry Smith   DMSubDomainHookRemove - remove a callback from the list to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()`
3529b3a6b972SJed Brown 
353020f4b53cSBarry Smith   Logically Collective; No Fortran Support
3531b3a6b972SJed Brown 
35324165533cSJose E. Roman   Input Parameters:
3533bb7acecfSBarry Smith + global       - global `DM`
3534bb7acecfSBarry Smith . ddhook       - function to run to pass data to the decomposition `DM` upon its creation
3535b3a6b972SJed Brown . restricthook - function to run to update data on block solve (at the beginning of the block solve)
353620f4b53cSBarry Smith - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3537b3a6b972SJed Brown 
3538b3a6b972SJed Brown   Level: advanced
3539b3a6b972SJed Brown 
354073ff1848SBarry Smith   Note:
354173ff1848SBarry Smith   See `DMSubDomainHookAdd()` for the calling sequences of `ddhook` and `restricthook`
354273ff1848SBarry Smith 
354373ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`,
354473ff1848SBarry Smith           `DMCreateDomainDecomposition()`
3545b3a6b972SJed Brown @*/
3546d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookRemove(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx)
3547d71ae5a4SJacob Faibussowitsch {
3548b3a6b972SJed Brown   DMSubDomainHookLink link, *p;
3549b3a6b972SJed Brown 
3550b3a6b972SJed Brown   PetscFunctionBegin;
3551b3a6b972SJed Brown   PetscValidHeaderSpecific(global, DM_CLASSID, 1);
3552b3a6b972SJed Brown   for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Search the list of current hooks */
3553b3a6b972SJed Brown     if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) {
3554b3a6b972SJed Brown       link = *p;
3555b3a6b972SJed Brown       *p   = link->next;
35569566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
3557b3a6b972SJed Brown       break;
3558b3a6b972SJed Brown     }
3559b3a6b972SJed Brown   }
35603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3561b3a6b972SJed Brown }
3562b3a6b972SJed Brown 
35635dbd56e3SPeter Brune /*@
356473ff1848SBarry Smith   DMSubDomainRestrict - restricts user-defined problem data to a subdomain `DM` by running hooks registered by `DMSubDomainHookAdd()`
35655dbd56e3SPeter Brune 
35665dbd56e3SPeter Brune   Collective if any hooks are
35675dbd56e3SPeter Brune 
35684165533cSJose E. Roman   Input Parameters:
3569a4e35b19SJacob Faibussowitsch + global   - The global `DM` to use as a base
3570a4e35b19SJacob Faibussowitsch . oscatter - The scatter from domain global vector filling subdomain global vector with overlap
3571a4e35b19SJacob Faibussowitsch . gscatter - The scatter from domain global vector filling subdomain local vector with ghosts
3572a4e35b19SJacob Faibussowitsch - subdm    - The subdomain `DM` to update
35735dbd56e3SPeter Brune 
35745dbd56e3SPeter Brune   Level: developer
35755dbd56e3SPeter Brune 
357673ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMCreateDomainDecomposition()`
35775dbd56e3SPeter Brune @*/
3578d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainRestrict(DM global, VecScatter oscatter, VecScatter gscatter, DM subdm)
3579d71ae5a4SJacob Faibussowitsch {
3580be081cd6SPeter Brune   DMSubDomainHookLink link;
35815dbd56e3SPeter Brune 
35825dbd56e3SPeter Brune   PetscFunctionBegin;
3583be081cd6SPeter Brune   for (link = global->subdomainhook; link; link = link->next) {
35841baa6e33SBarry Smith     if (link->restricthook) PetscCall((*link->restricthook)(global, oscatter, gscatter, subdm, link->ctx));
35855dbd56e3SPeter Brune   }
35863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35875dbd56e3SPeter Brune }
35885dbd56e3SPeter Brune 
35895fe1f584SPeter Brune /*@
3590bb7acecfSBarry Smith   DMGetCoarsenLevel - Gets the number of coarsenings that have generated this `DM`.
35915fe1f584SPeter Brune 
35925fe1f584SPeter Brune   Not Collective
35935fe1f584SPeter Brune 
35945fe1f584SPeter Brune   Input Parameter:
3595bb7acecfSBarry Smith . dm - the `DM` object
35965fe1f584SPeter Brune 
35975fe1f584SPeter Brune   Output Parameter:
35986a7d9d85SPeter Brune . level - number of coarsenings
35995fe1f584SPeter Brune 
36005fe1f584SPeter Brune   Level: developer
36015fe1f584SPeter Brune 
36021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMSetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
36035fe1f584SPeter Brune @*/
3604d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarsenLevel(DM dm, PetscInt *level)
3605d71ae5a4SJacob Faibussowitsch {
36065fe1f584SPeter Brune   PetscFunctionBegin;
36075fe1f584SPeter Brune   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36084f572ea9SToby Isaac   PetscAssertPointer(level, 2);
36095fe1f584SPeter Brune   *level = dm->leveldown;
36103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
36115fe1f584SPeter Brune }
36125fe1f584SPeter Brune 
36139a64c4a8SMatthew G. Knepley /*@
3614bb7acecfSBarry Smith   DMSetCoarsenLevel - Sets the number of coarsenings that have generated this `DM`.
36159a64c4a8SMatthew G. Knepley 
361620f4b53cSBarry Smith   Collective
36179a64c4a8SMatthew G. Knepley 
36189a64c4a8SMatthew G. Knepley   Input Parameters:
3619bb7acecfSBarry Smith + dm    - the `DM` object
36209a64c4a8SMatthew G. Knepley - level - number of coarsenings
36219a64c4a8SMatthew G. Knepley 
36229a64c4a8SMatthew G. Knepley   Level: developer
36239a64c4a8SMatthew G. Knepley 
3624bb7acecfSBarry Smith   Note:
3625bb7acecfSBarry Smith   This is rarely used directly, the information is automatically set when a `DM` is created with `DMCoarsen()`
3626bb7acecfSBarry Smith 
362742747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
36289a64c4a8SMatthew G. Knepley @*/
3629d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarsenLevel(DM dm, PetscInt level)
3630d71ae5a4SJacob Faibussowitsch {
36319a64c4a8SMatthew G. Knepley   PetscFunctionBegin;
36329a64c4a8SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36339a64c4a8SMatthew G. Knepley   dm->leveldown = level;
36343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
36359a64c4a8SMatthew G. Knepley }
36369a64c4a8SMatthew G. Knepley 
3637cc4c1da9SBarry Smith /*@
3638bb7acecfSBarry Smith   DMRefineHierarchy - Refines a `DM` object, all levels at once
363947c6ae99SBarry Smith 
364020f4b53cSBarry Smith   Collective
364147c6ae99SBarry Smith 
3642d8d19677SJose E. Roman   Input Parameters:
3643bb7acecfSBarry Smith + dm      - the `DM` object
364447c6ae99SBarry Smith - nlevels - the number of levels of refinement
364547c6ae99SBarry Smith 
364647c6ae99SBarry Smith   Output Parameter:
3647bb7acecfSBarry Smith . dmf - the refined `DM` hierarchy
364847c6ae99SBarry Smith 
364947c6ae99SBarry Smith   Level: developer
365047c6ae99SBarry Smith 
36511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMCoarsenHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
365247c6ae99SBarry Smith @*/
3653d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHierarchy(DM dm, PetscInt nlevels, DM dmf[])
3654d71ae5a4SJacob Faibussowitsch {
365547c6ae99SBarry Smith   PetscFunctionBegin;
3656171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36577a8be351SBarry Smith   PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative");
36583ba16761SJacob Faibussowitsch   if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS);
36594f572ea9SToby Isaac   PetscAssertPointer(dmf, 3);
3660213acdd3SPierre Jolivet   if (dm->ops->refine && !dm->ops->refinehierarchy) {
366147c6ae99SBarry Smith     PetscInt i;
366247c6ae99SBarry Smith 
36639566063dSJacob Faibussowitsch     PetscCall(DMRefine(dm, PetscObjectComm((PetscObject)dm), &dmf[0]));
366448a46eb9SPierre Jolivet     for (i = 1; i < nlevels; i++) PetscCall(DMRefine(dmf[i - 1], PetscObjectComm((PetscObject)dm), &dmf[i]));
3665213acdd3SPierre Jolivet   } else PetscUseTypeMethod(dm, refinehierarchy, nlevels, dmf);
36663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
366747c6ae99SBarry Smith }
366847c6ae99SBarry Smith 
3669cc4c1da9SBarry Smith /*@
3670bb7acecfSBarry Smith   DMCoarsenHierarchy - Coarsens a `DM` object, all levels at once
367147c6ae99SBarry Smith 
367220f4b53cSBarry Smith   Collective
367347c6ae99SBarry Smith 
3674d8d19677SJose E. Roman   Input Parameters:
3675bb7acecfSBarry Smith + dm      - the `DM` object
367647c6ae99SBarry Smith - nlevels - the number of levels of coarsening
367747c6ae99SBarry Smith 
367847c6ae99SBarry Smith   Output Parameter:
3679bb7acecfSBarry Smith . dmc - the coarsened `DM` hierarchy
368047c6ae99SBarry Smith 
368147c6ae99SBarry Smith   Level: developer
368247c6ae99SBarry Smith 
36831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMRefineHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
368447c6ae99SBarry Smith @*/
3685d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHierarchy(DM dm, PetscInt nlevels, DM dmc[])
3686d71ae5a4SJacob Faibussowitsch {
368747c6ae99SBarry Smith   PetscFunctionBegin;
3688171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36897a8be351SBarry Smith   PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative");
36903ba16761SJacob Faibussowitsch   if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS);
36914f572ea9SToby Isaac   PetscAssertPointer(dmc, 3);
3692213acdd3SPierre Jolivet   if (dm->ops->coarsen && !dm->ops->coarsenhierarchy) {
369347c6ae99SBarry Smith     PetscInt i;
369447c6ae99SBarry Smith 
36959566063dSJacob Faibussowitsch     PetscCall(DMCoarsen(dm, PetscObjectComm((PetscObject)dm), &dmc[0]));
369648a46eb9SPierre Jolivet     for (i = 1; i < nlevels; i++) PetscCall(DMCoarsen(dmc[i - 1], PetscObjectComm((PetscObject)dm), &dmc[i]));
3697213acdd3SPierre Jolivet   } else PetscUseTypeMethod(dm, coarsenhierarchy, nlevels, dmc);
36983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
369947c6ae99SBarry Smith }
370047c6ae99SBarry Smith 
37011a266240SBarry Smith /*@C
3702bb7acecfSBarry Smith   DMSetApplicationContextDestroy - Sets a user function that will be called to destroy the application context when the `DM` is destroyed
37031a266240SBarry Smith 
3704bb7acecfSBarry Smith   Logically Collective if the function is collective
37051a266240SBarry Smith 
37061a266240SBarry Smith   Input Parameters:
3707bb7acecfSBarry Smith + dm      - the `DM` object
370849abdd8aSBarry Smith - destroy - the destroy function, see `PetscCtxDestroyFn` for the calling sequence
37091a266240SBarry Smith 
37101a266240SBarry Smith   Level: intermediate
37111a266240SBarry Smith 
371249abdd8aSBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`,
371349abdd8aSBarry Smith           `DMGetApplicationContext()`, `PetscCtxDestroyFn`
3714f07f9ceaSJed Brown @*/
371549abdd8aSBarry Smith PetscErrorCode DMSetApplicationContextDestroy(DM dm, PetscCtxDestroyFn *destroy)
3716d71ae5a4SJacob Faibussowitsch {
37171a266240SBarry Smith   PetscFunctionBegin;
3718171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
37191a266240SBarry Smith   dm->ctxdestroy = destroy;
37203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
37211a266240SBarry Smith }
37221a266240SBarry Smith 
3723b07ff414SBarry Smith /*@
3724bb7acecfSBarry Smith   DMSetApplicationContext - Set a user context into a `DM` object
372547c6ae99SBarry Smith 
372647c6ae99SBarry Smith   Not Collective
372747c6ae99SBarry Smith 
372847c6ae99SBarry Smith   Input Parameters:
3729bb7acecfSBarry Smith + dm  - the `DM` object
373047c6ae99SBarry Smith - ctx - the user context
373147c6ae99SBarry Smith 
373247c6ae99SBarry Smith   Level: intermediate
373347c6ae99SBarry Smith 
3734ce78bad3SBarry Smith   Note:
373535cb6cd3SPierre Jolivet   A user context is a way to pass problem specific information that is accessible whenever the `DM` is available
3736e33b3f0fSStefano Zampini   In a multilevel solver, the user context is shared by all the `DM` in the hierarchy; it is thus not advisable
3737e33b3f0fSStefano Zampini   to store objects that represent discretized quantities inside the context.
3738bb7acecfSBarry Smith 
3739ce78bad3SBarry Smith   Fortran Note:
3740ce78bad3SBarry Smith   This only works when `ctx` is a Fortran derived type (it cannot be a `PetscObject`), we recommend writing a Fortran interface definition for this
3741ce78bad3SBarry Smith   function that tells the Fortran compiler the derived data type that is passed in as the `ctx` argument. See `DMGetApplicationContext()` for
3742ce78bad3SBarry Smith   an example.
3743ce78bad3SBarry Smith 
374460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
374547c6ae99SBarry Smith @*/
3746d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContext(DM dm, void *ctx)
3747d71ae5a4SJacob Faibussowitsch {
374847c6ae99SBarry Smith   PetscFunctionBegin;
3749171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
375047c6ae99SBarry Smith   dm->ctx = ctx;
37513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
375247c6ae99SBarry Smith }
375347c6ae99SBarry Smith 
375447c6ae99SBarry Smith /*@
3755ce78bad3SBarry Smith   DMGetApplicationContext - Gets a user context from a `DM` object provided with `DMSetApplicationContext()`
375647c6ae99SBarry Smith 
375747c6ae99SBarry Smith   Not Collective
375847c6ae99SBarry Smith 
375947c6ae99SBarry Smith   Input Parameter:
3760bb7acecfSBarry Smith . dm - the `DM` object
376147c6ae99SBarry Smith 
376247c6ae99SBarry Smith   Output Parameter:
3763ce78bad3SBarry Smith . ctx - a pointer to the user context
376447c6ae99SBarry Smith 
376547c6ae99SBarry Smith   Level: intermediate
376647c6ae99SBarry Smith 
3767bb7acecfSBarry Smith   Note:
376835cb6cd3SPierre Jolivet   A user context is a way to pass problem specific information that is accessible whenever the `DM` is available
3769bb7acecfSBarry Smith 
3770ce78bad3SBarry Smith   Fortran Notes:
3771ce78bad3SBarry Smith   This only works when the context is a Fortran derived type (it cannot be a `PetscObject`) and you **must** write a Fortran interface definition for this
3772ce78bad3SBarry Smith   function that tells the Fortran compiler the derived data type that is returned as the `ctx` argument. For example,
3773ce78bad3SBarry Smith .vb
3774ce78bad3SBarry Smith   Interface DMGetApplicationContext
3775ce78bad3SBarry Smith     Subroutine DMGetApplicationContext(dm,ctx,ierr)
3776ce78bad3SBarry Smith   #include <petsc/finclude/petscdm.h>
3777ce78bad3SBarry Smith       use petscdm
3778ce78bad3SBarry Smith       DM dm
3779ce78bad3SBarry Smith       type(tUsertype), pointer :: ctx
3780ce78bad3SBarry Smith       PetscErrorCode ierr
3781ce78bad3SBarry Smith     End Subroutine
3782ce78bad3SBarry Smith   End Interface DMGetApplicationContext
3783ce78bad3SBarry Smith .ve
3784ce78bad3SBarry Smith 
3785*bfe80ac4SPierre Jolivet   The prototype for `ctx` must be
3786ce78bad3SBarry Smith .vb
3787ce78bad3SBarry Smith   type(tUsertype), pointer :: ctx
3788ce78bad3SBarry Smith .ve
3789ce78bad3SBarry Smith 
379042747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
379147c6ae99SBarry Smith @*/
3792ce78bad3SBarry Smith PetscErrorCode DMGetApplicationContext(DM dm, PeCtx ctx)
3793d71ae5a4SJacob Faibussowitsch {
379447c6ae99SBarry Smith   PetscFunctionBegin;
3795171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
37961b2093e4SBarry Smith   *(void **)ctx = dm->ctx;
37973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
379847c6ae99SBarry Smith }
379947c6ae99SBarry Smith 
380008da532bSDmitry Karpeev /*@C
3801bb7acecfSBarry Smith   DMSetVariableBounds - sets a function to compute the lower and upper bound vectors for `SNESVI`.
380208da532bSDmitry Karpeev 
380320f4b53cSBarry Smith   Logically Collective
380408da532bSDmitry Karpeev 
3805d8d19677SJose E. Roman   Input Parameters:
380608da532bSDmitry Karpeev + dm - the DM object
3807ce78bad3SBarry Smith - f  - the function that computes variable bounds used by `SNESVI` (use `NULL` to cancel a previous function that was set)
380808da532bSDmitry Karpeev 
380908da532bSDmitry Karpeev   Level: intermediate
381008da532bSDmitry Karpeev 
3811ce78bad3SBarry Smith   Developer Note:
3812ce78bad3SBarry Smith   Should be called `DMSetComputeVIBounds()` or something similar
3813ce78bad3SBarry Smith 
38141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`,
3815db781477SPatrick Sanan          `DMSetJacobian()`
381608da532bSDmitry Karpeev @*/
3817d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVariableBounds(DM dm, PetscErrorCode (*f)(DM, Vec, Vec))
3818d71ae5a4SJacob Faibussowitsch {
381908da532bSDmitry Karpeev   PetscFunctionBegin;
38205a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
382108da532bSDmitry Karpeev   dm->ops->computevariablebounds = f;
38223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
382308da532bSDmitry Karpeev }
382408da532bSDmitry Karpeev 
382508da532bSDmitry Karpeev /*@
3826bb7acecfSBarry Smith   DMHasVariableBounds - does the `DM` object have a variable bounds function?
382708da532bSDmitry Karpeev 
382808da532bSDmitry Karpeev   Not Collective
382908da532bSDmitry Karpeev 
383008da532bSDmitry Karpeev   Input Parameter:
3831bb7acecfSBarry Smith . dm - the `DM` object to destroy
383208da532bSDmitry Karpeev 
383308da532bSDmitry Karpeev   Output Parameter:
3834bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the variable bounds function exists
383508da532bSDmitry Karpeev 
383608da532bSDmitry Karpeev   Level: developer
383708da532bSDmitry Karpeev 
38381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
383908da532bSDmitry Karpeev @*/
3840d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasVariableBounds(DM dm, PetscBool *flg)
3841d71ae5a4SJacob Faibussowitsch {
384208da532bSDmitry Karpeev   PetscFunctionBegin;
38435a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
38444f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
384508da532bSDmitry Karpeev   *flg = (dm->ops->computevariablebounds) ? PETSC_TRUE : PETSC_FALSE;
38463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
384708da532bSDmitry Karpeev }
384808da532bSDmitry Karpeev 
3849cc4c1da9SBarry Smith /*@
3850bb7acecfSBarry Smith   DMComputeVariableBounds - compute variable bounds used by `SNESVI`.
385108da532bSDmitry Karpeev 
385220f4b53cSBarry Smith   Logically Collective
385308da532bSDmitry Karpeev 
3854f899ff85SJose E. Roman   Input Parameter:
3855bb7acecfSBarry Smith . dm - the `DM` object
385608da532bSDmitry Karpeev 
385760225df5SJacob Faibussowitsch   Output Parameters:
385808da532bSDmitry Karpeev + xl - lower bound
385908da532bSDmitry Karpeev - xu - upper bound
386008da532bSDmitry Karpeev 
3861907376e6SBarry Smith   Level: advanced
3862907376e6SBarry Smith 
386320f4b53cSBarry Smith   Note:
386495452b02SPatrick Sanan   This is generally not called by users. It calls the function provided by the user with DMSetVariableBounds()
386508da532bSDmitry Karpeev 
38661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
386708da532bSDmitry Karpeev @*/
3868d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeVariableBounds(DM dm, Vec xl, Vec xu)
3869d71ae5a4SJacob Faibussowitsch {
387008da532bSDmitry Karpeev   PetscFunctionBegin;
38715a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
387208da532bSDmitry Karpeev   PetscValidHeaderSpecific(xl, VEC_CLASSID, 2);
38735a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(xu, VEC_CLASSID, 3);
3874dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, computevariablebounds, xl, xu);
38753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
387608da532bSDmitry Karpeev }
387708da532bSDmitry Karpeev 
3878b0ae01b7SPeter Brune /*@
3879bb7acecfSBarry Smith   DMHasColoring - does the `DM` object have a method of providing a coloring?
3880b0ae01b7SPeter Brune 
3881b0ae01b7SPeter Brune   Not Collective
3882b0ae01b7SPeter Brune 
3883b0ae01b7SPeter Brune   Input Parameter:
3884b0ae01b7SPeter Brune . dm - the DM object
3885b0ae01b7SPeter Brune 
3886b0ae01b7SPeter Brune   Output Parameter:
3887bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateColoring()`.
3888b0ae01b7SPeter Brune 
3889b0ae01b7SPeter Brune   Level: developer
3890b0ae01b7SPeter Brune 
38911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateColoring()`
3892b0ae01b7SPeter Brune @*/
3893d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasColoring(DM dm, PetscBool *flg)
3894d71ae5a4SJacob Faibussowitsch {
3895b0ae01b7SPeter Brune   PetscFunctionBegin;
38965a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
38974f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
3898b0ae01b7SPeter Brune   *flg = (dm->ops->getcoloring) ? PETSC_TRUE : PETSC_FALSE;
38993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3900b0ae01b7SPeter Brune }
3901b0ae01b7SPeter Brune 
39023ad4599aSBarry Smith /*@
3903bb7acecfSBarry Smith   DMHasCreateRestriction - does the `DM` object have a method of providing a restriction?
39043ad4599aSBarry Smith 
39053ad4599aSBarry Smith   Not Collective
39063ad4599aSBarry Smith 
39073ad4599aSBarry Smith   Input Parameter:
3908bb7acecfSBarry Smith . dm - the `DM` object
39093ad4599aSBarry Smith 
39103ad4599aSBarry Smith   Output Parameter:
3911bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateRestriction()`.
39123ad4599aSBarry Smith 
39133ad4599aSBarry Smith   Level: developer
39143ad4599aSBarry Smith 
39151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateRestriction()`, `DMHasCreateInterpolation()`, `DMHasCreateInjection()`
39163ad4599aSBarry Smith @*/
3917d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateRestriction(DM dm, PetscBool *flg)
3918d71ae5a4SJacob Faibussowitsch {
39193ad4599aSBarry Smith   PetscFunctionBegin;
39205a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
39214f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
39223ad4599aSBarry Smith   *flg = (dm->ops->createrestriction) ? PETSC_TRUE : PETSC_FALSE;
39233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
39243ad4599aSBarry Smith }
39253ad4599aSBarry Smith 
3926a7058e45SLawrence Mitchell /*@
3927bb7acecfSBarry Smith   DMHasCreateInjection - does the `DM` object have a method of providing an injection?
3928a7058e45SLawrence Mitchell 
3929a7058e45SLawrence Mitchell   Not Collective
3930a7058e45SLawrence Mitchell 
3931a7058e45SLawrence Mitchell   Input Parameter:
3932bb7acecfSBarry Smith . dm - the `DM` object
3933a7058e45SLawrence Mitchell 
3934a7058e45SLawrence Mitchell   Output Parameter:
3935bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateInjection()`.
3936a7058e45SLawrence Mitchell 
3937a7058e45SLawrence Mitchell   Level: developer
3938a7058e45SLawrence Mitchell 
39391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateInjection()`, `DMHasCreateRestriction()`, `DMHasCreateInterpolation()`
3940a7058e45SLawrence Mitchell @*/
3941d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateInjection(DM dm, PetscBool *flg)
3942d71ae5a4SJacob Faibussowitsch {
3943a7058e45SLawrence Mitchell   PetscFunctionBegin;
39445a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
39454f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
3946dbbe0bcdSBarry Smith   if (dm->ops->hascreateinjection) PetscUseTypeMethod(dm, hascreateinjection, flg);
3947ad540459SPierre Jolivet   else *flg = (dm->ops->createinjection) ? PETSC_TRUE : PETSC_FALSE;
39483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3949a7058e45SLawrence Mitchell }
3950a7058e45SLawrence Mitchell 
39510298fd71SBarry Smith PetscFunctionList DMList              = NULL;
3952264ace61SBarry Smith PetscBool         DMRegisterAllCalled = PETSC_FALSE;
3953264ace61SBarry Smith 
3954cc4c1da9SBarry Smith /*@
3955bb7acecfSBarry Smith   DMSetType - Builds a `DM`, for a particular `DM` implementation.
3956264ace61SBarry Smith 
395720f4b53cSBarry Smith   Collective
3958264ace61SBarry Smith 
3959264ace61SBarry Smith   Input Parameters:
3960bb7acecfSBarry Smith + dm     - The `DM` object
3961bb7acecfSBarry Smith - method - The name of the `DMType`, for example `DMDA`, `DMPLEX`
3962264ace61SBarry Smith 
3963264ace61SBarry Smith   Options Database Key:
3964bb7acecfSBarry Smith . -dm_type <type> - Sets the `DM` type; use -help for a list of available types
3965264ace61SBarry Smith 
3966264ace61SBarry Smith   Level: intermediate
3967264ace61SBarry Smith 
3968bb7acecfSBarry Smith   Note:
39690462cc06SPierre Jolivet   Of the `DM` is constructed by directly calling a function to construct a particular `DM`, for example, `DMDACreate2d()` or `DMPlexCreateBoxMesh()`
3970bb7acecfSBarry Smith 
39711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMGetType()`, `DMCreate()`, `DMDACreate2d()`
3972264ace61SBarry Smith @*/
3973d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetType(DM dm, DMType method)
3974d71ae5a4SJacob Faibussowitsch {
3975264ace61SBarry Smith   PetscErrorCode (*r)(DM);
3976264ace61SBarry Smith   PetscBool match;
3977264ace61SBarry Smith 
3978264ace61SBarry Smith   PetscFunctionBegin;
3979264ace61SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
39809566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, method, &match));
39813ba16761SJacob Faibussowitsch   if (match) PetscFunctionReturn(PETSC_SUCCESS);
3982264ace61SBarry Smith 
39839566063dSJacob Faibussowitsch   PetscCall(DMRegisterAll());
39849566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListFind(DMList, method, &r));
39857a8be351SBarry Smith   PetscCheck(r, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown DM type: %s", method);
3986264ace61SBarry Smith 
3987dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, destroy);
39889566063dSJacob Faibussowitsch   PetscCall(PetscMemzero(dm->ops, sizeof(*dm->ops)));
39899566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)dm, method));
39909566063dSJacob Faibussowitsch   PetscCall((*r)(dm));
39913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3992264ace61SBarry Smith }
3993264ace61SBarry Smith 
3994cc4c1da9SBarry Smith /*@
3995bb7acecfSBarry Smith   DMGetType - Gets the `DM` type name (as a string) from the `DM`.
3996264ace61SBarry Smith 
3997264ace61SBarry Smith   Not Collective
3998264ace61SBarry Smith 
3999264ace61SBarry Smith   Input Parameter:
4000bb7acecfSBarry Smith . dm - The `DM`
4001264ace61SBarry Smith 
4002264ace61SBarry Smith   Output Parameter:
4003bb7acecfSBarry Smith . type - The `DMType` name
4004264ace61SBarry Smith 
4005264ace61SBarry Smith   Level: intermediate
4006264ace61SBarry Smith 
40071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMSetType()`, `DMCreate()`
4008264ace61SBarry Smith @*/
4009d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetType(DM dm, DMType *type)
4010d71ae5a4SJacob Faibussowitsch {
4011264ace61SBarry Smith   PetscFunctionBegin;
4012264ace61SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
40134f572ea9SToby Isaac   PetscAssertPointer(type, 2);
40149566063dSJacob Faibussowitsch   PetscCall(DMRegisterAll());
4015264ace61SBarry Smith   *type = ((PetscObject)dm)->type_name;
40163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4017264ace61SBarry Smith }
4018264ace61SBarry Smith 
40195d83a8b1SBarry Smith /*@
4020bb7acecfSBarry Smith   DMConvert - Converts a `DM` to another `DM`, either of the same or different type.
402167a56275SMatthew G Knepley 
402220f4b53cSBarry Smith   Collective
402367a56275SMatthew G Knepley 
402467a56275SMatthew G Knepley   Input Parameters:
4025bb7acecfSBarry Smith + dm      - the `DM`
4026bb7acecfSBarry Smith - newtype - new `DM` type (use "same" for the same type)
402767a56275SMatthew G Knepley 
402867a56275SMatthew G Knepley   Output Parameter:
4029bb7acecfSBarry Smith . M - pointer to new `DM`
403067a56275SMatthew G Knepley 
403120f4b53cSBarry Smith   Level: intermediate
403220f4b53cSBarry Smith 
403373ff1848SBarry Smith   Note:
4034bb7acecfSBarry Smith   Cannot be used to convert a sequential `DM` to a parallel or a parallel to sequential,
4035bb7acecfSBarry Smith   the MPI communicator of the generated `DM` is always the same as the communicator
4036bb7acecfSBarry Smith   of the input `DM`.
403767a56275SMatthew G Knepley 
40381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMCreate()`, `DMClone()`
403967a56275SMatthew G Knepley @*/
4040d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConvert(DM dm, DMType newtype, DM *M)
4041d71ae5a4SJacob Faibussowitsch {
404267a56275SMatthew G Knepley   DM        B;
404367a56275SMatthew G Knepley   char      convname[256];
4044c067b6caSMatthew G. Knepley   PetscBool sametype /*, issame */;
404567a56275SMatthew G Knepley 
404667a56275SMatthew G Knepley   PetscFunctionBegin;
404767a56275SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
404867a56275SMatthew G Knepley   PetscValidType(dm, 1);
40494f572ea9SToby Isaac   PetscAssertPointer(M, 3);
40509566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, newtype, &sametype));
40519566063dSJacob Faibussowitsch   /* PetscCall(PetscStrcmp(newtype, "same", &issame)); */
4052c067b6caSMatthew G. Knepley   if (sametype) {
4053c067b6caSMatthew G. Knepley     *M = dm;
40549566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
40553ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
4056c067b6caSMatthew G. Knepley   } else {
40570298fd71SBarry Smith     PetscErrorCode (*conv)(DM, DMType, DM *) = NULL;
405867a56275SMatthew G Knepley 
405967a56275SMatthew G Knepley     /*
406067a56275SMatthew G Knepley        Order of precedence:
406167a56275SMatthew G Knepley        1) See if a specialized converter is known to the current DM.
406267a56275SMatthew G Knepley        2) See if a specialized converter is known to the desired DM class.
406367a56275SMatthew G Knepley        3) See if a good general converter is registered for the desired class
406467a56275SMatthew G Knepley        4) See if a good general converter is known for the current matrix.
406567a56275SMatthew G Knepley        5) Use a really basic converter.
406667a56275SMatthew G Knepley     */
406767a56275SMatthew G Knepley 
406867a56275SMatthew G Knepley     /* 1) See if a specialized converter is known to the current DM and the desired class */
40699566063dSJacob Faibussowitsch     PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname)));
40709566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname)));
40719566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_", sizeof(convname)));
40729566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, newtype, sizeof(convname)));
40739566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_C", sizeof(convname)));
40749566063dSJacob Faibussowitsch     PetscCall(PetscObjectQueryFunction((PetscObject)dm, convname, &conv));
407567a56275SMatthew G Knepley     if (conv) goto foundconv;
407667a56275SMatthew G Knepley 
407767a56275SMatthew G Knepley     /* 2)  See if a specialized converter is known to the desired DM class. */
40789566063dSJacob Faibussowitsch     PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &B));
40799566063dSJacob Faibussowitsch     PetscCall(DMSetType(B, newtype));
40809566063dSJacob Faibussowitsch     PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname)));
40819566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname)));
40829566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_", sizeof(convname)));
40839566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, newtype, sizeof(convname)));
40849566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_C", sizeof(convname)));
40859566063dSJacob Faibussowitsch     PetscCall(PetscObjectQueryFunction((PetscObject)B, convname, &conv));
408667a56275SMatthew G Knepley     if (conv) {
40879566063dSJacob Faibussowitsch       PetscCall(DMDestroy(&B));
408867a56275SMatthew G Knepley       goto foundconv;
408967a56275SMatthew G Knepley     }
409067a56275SMatthew G Knepley 
409167a56275SMatthew G Knepley #if 0
409267a56275SMatthew G Knepley     /* 3) See if a good general converter is registered for the desired class */
409367a56275SMatthew G Knepley     conv = B->ops->convertfrom;
40949566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&B));
409567a56275SMatthew G Knepley     if (conv) goto foundconv;
409667a56275SMatthew G Knepley 
409767a56275SMatthew G Knepley     /* 4) See if a good general converter is known for the current matrix */
409867a56275SMatthew G Knepley     if (dm->ops->convert) {
409967a56275SMatthew G Knepley       conv = dm->ops->convert;
410067a56275SMatthew G Knepley     }
410167a56275SMatthew G Knepley     if (conv) goto foundconv;
410267a56275SMatthew G Knepley #endif
410367a56275SMatthew G Knepley 
410467a56275SMatthew G Knepley     /* 5) Use a really basic converter. */
410598921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No conversion possible between DM types %s and %s", ((PetscObject)dm)->type_name, newtype);
410667a56275SMatthew G Knepley 
410767a56275SMatthew G Knepley   foundconv:
41089566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(DM_Convert, dm, 0, 0, 0));
41099566063dSJacob Faibussowitsch     PetscCall((*conv)(dm, newtype, M));
411012fa691eSMatthew G. Knepley     /* Things that are independent of DM type: We should consult DMClone() here */
411190b157c4SStefano Zampini     {
41124fb89dddSMatthew G. Knepley       const PetscReal *maxCell, *Lstart, *L;
41136858538eSMatthew G. Knepley 
41144fb89dddSMatthew G. Knepley       PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
41154fb89dddSMatthew G. Knepley       PetscCall(DMSetPeriodicity(*M, maxCell, Lstart, L));
4116c8a6034eSMark       (*M)->prealloc_only = dm->prealloc_only;
41179566063dSJacob Faibussowitsch       PetscCall(PetscFree((*M)->vectype));
41189566063dSJacob Faibussowitsch       PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*M)->vectype));
41199566063dSJacob Faibussowitsch       PetscCall(PetscFree((*M)->mattype));
41209566063dSJacob Faibussowitsch       PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*M)->mattype));
412112fa691eSMatthew G. Knepley     }
41229566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(DM_Convert, dm, 0, 0, 0));
412367a56275SMatthew G Knepley   }
41249566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)*M));
41253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
412667a56275SMatthew G Knepley }
4127264ace61SBarry Smith 
4128264ace61SBarry Smith /*@C
4129bb7acecfSBarry Smith   DMRegister -  Adds a new `DM` type implementation
41301c84c290SBarry Smith 
4131cc4c1da9SBarry Smith   Not Collective, No Fortran Support
41321c84c290SBarry Smith 
41331c84c290SBarry Smith   Input Parameters:
413420f4b53cSBarry Smith + sname    - The name of a new user-defined creation routine
413520f4b53cSBarry Smith - function - The creation routine itself
413620f4b53cSBarry Smith 
413720f4b53cSBarry Smith   Level: advanced
41381c84c290SBarry Smith 
413973ff1848SBarry Smith   Note:
414020f4b53cSBarry Smith   `DMRegister()` may be called multiple times to add several user-defined `DM`s
41411c84c290SBarry Smith 
414260225df5SJacob Faibussowitsch   Example Usage:
41431c84c290SBarry Smith .vb
4144bdf89e91SBarry Smith     DMRegister("my_da", MyDMCreate);
41451c84c290SBarry Smith .ve
41461c84c290SBarry Smith 
414720f4b53cSBarry Smith   Then, your `DM` type can be chosen with the procedural interface via
41481c84c290SBarry Smith .vb
41491c84c290SBarry Smith     DMCreate(MPI_Comm, DM *);
41501c84c290SBarry Smith     DMSetType(DM,"my_da");
41511c84c290SBarry Smith .ve
41521c84c290SBarry Smith   or at runtime via the option
41531c84c290SBarry Smith .vb
41541c84c290SBarry Smith     -da_type my_da
41551c84c290SBarry Smith .ve
4156264ace61SBarry Smith 
41571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMSetType()`, `DMRegisterAll()`, `DMRegisterDestroy()`
4158264ace61SBarry Smith @*/
4159d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRegister(const char sname[], PetscErrorCode (*function)(DM))
4160d71ae5a4SJacob Faibussowitsch {
4161264ace61SBarry Smith   PetscFunctionBegin;
41629566063dSJacob Faibussowitsch   PetscCall(DMInitializePackage());
41639566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListAdd(&DMList, sname, function));
41643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4165264ace61SBarry Smith }
4166264ace61SBarry Smith 
4167ffeef943SBarry Smith /*@
4168bb7acecfSBarry Smith   DMLoad - Loads a DM that has been stored in binary  with `DMView()`.
4169b859378eSBarry Smith 
417020f4b53cSBarry Smith   Collective
4171b859378eSBarry Smith 
4172b859378eSBarry Smith   Input Parameters:
4173bb7acecfSBarry Smith + newdm  - the newly loaded `DM`, this needs to have been created with `DMCreate()` or
4174bb7acecfSBarry Smith            some related function before a call to `DMLoad()`.
4175bb7acecfSBarry Smith - viewer - binary file viewer, obtained from `PetscViewerBinaryOpen()` or
4176bb7acecfSBarry Smith            `PETSCVIEWERHDF5` file viewer, obtained from `PetscViewerHDF5Open()`
4177b859378eSBarry Smith 
4178b859378eSBarry Smith   Level: intermediate
4179b859378eSBarry Smith 
4180b859378eSBarry Smith   Notes:
418155849f57SBarry Smith   The type is determined by the data in the file, any type set into the DM before this call is ignored.
4182b859378eSBarry Smith 
4183bb7acecfSBarry Smith   Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` format, one can save multiple `DMPLEX`
4184bb7acecfSBarry Smith   meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()`
4185bb7acecfSBarry Smith   before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object.
4186cd7e8a5eSksagiyam 
41871cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewerBinaryOpen()`, `DMView()`, `MatLoad()`, `VecLoad()`
4188b859378eSBarry Smith @*/
4189d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLoad(DM newdm, PetscViewer viewer)
4190d71ae5a4SJacob Faibussowitsch {
41919331c7a4SMatthew G. Knepley   PetscBool isbinary, ishdf5;
4192b859378eSBarry Smith 
4193b859378eSBarry Smith   PetscFunctionBegin;
4194b859378eSBarry Smith   PetscValidHeaderSpecific(newdm, DM_CLASSID, 1);
4195b859378eSBarry Smith   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
41969566063dSJacob Faibussowitsch   PetscCall(PetscViewerCheckReadable(viewer));
41979566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
41989566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
41999566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_Load, viewer, 0, 0, 0));
42009331c7a4SMatthew G. Knepley   if (isbinary) {
42019331c7a4SMatthew G. Knepley     PetscInt classid;
42029331c7a4SMatthew G. Knepley     char     type[256];
4203b859378eSBarry Smith 
42049566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryRead(viewer, &classid, 1, NULL, PETSC_INT));
4205835f2295SStefano Zampini     PetscCheck(classid == DM_FILE_CLASSID, PetscObjectComm((PetscObject)newdm), PETSC_ERR_ARG_WRONG, "Not DM next in file, classid found %" PetscInt_FMT, classid);
42069566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryRead(viewer, type, 256, NULL, PETSC_CHAR));
42079566063dSJacob Faibussowitsch     PetscCall(DMSetType(newdm, type));
4208dbbe0bcdSBarry Smith     PetscTryTypeMethod(newdm, load, viewer);
42099331c7a4SMatthew G. Knepley   } else if (ishdf5) {
4210dbbe0bcdSBarry Smith     PetscTryTypeMethod(newdm, load, viewer);
42119331c7a4SMatthew G. Knepley   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerBinaryOpen() or PetscViewerHDF5Open()");
42129566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_Load, viewer, 0, 0, 0));
42133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4214b859378eSBarry Smith }
4215b859378eSBarry Smith 
42164ee01570SBarry Smith /* FEM Support */
42177da65231SMatthew G Knepley 
42182ecf6ec3SMatthew G. Knepley PetscErrorCode DMPrintCellIndices(PetscInt c, const char name[], PetscInt len, const PetscInt x[])
42192ecf6ec3SMatthew G. Knepley {
42202ecf6ec3SMatthew G. Knepley   PetscInt f;
42212ecf6ec3SMatthew G. Knepley 
42222ecf6ec3SMatthew G. Knepley   PetscFunctionBegin;
42232ecf6ec3SMatthew G. Knepley   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
42242ecf6ec3SMatthew G. Knepley   for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  | %" PetscInt_FMT " |\n", x[f]));
42252ecf6ec3SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
42262ecf6ec3SMatthew G. Knepley }
42272ecf6ec3SMatthew G. Knepley 
4228d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellVector(PetscInt c, const char name[], PetscInt len, const PetscScalar x[])
4229d71ae5a4SJacob Faibussowitsch {
42301d47ebbbSSatish Balay   PetscInt f;
42311b30c384SMatthew G Knepley 
42327da65231SMatthew G Knepley   PetscFunctionBegin;
423363a3b9bcSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
423448a46eb9SPierre Jolivet   for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  | %g |\n", (double)PetscRealPart(x[f])));
42353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42367da65231SMatthew G Knepley }
42377da65231SMatthew G Knepley 
42385962854dSMatthew G. Knepley PetscErrorCode DMPrintCellVectorReal(PetscInt c, const char name[], PetscInt len, const PetscReal x[])
42395962854dSMatthew G. Knepley {
42405962854dSMatthew G. Knepley   PetscInt f;
42415962854dSMatthew G. Knepley 
42425962854dSMatthew G. Knepley   PetscFunctionBegin;
42435962854dSMatthew G. Knepley   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
42445962854dSMatthew G. Knepley   for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  | %g |\n", (double)x[f]));
42455962854dSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
42465962854dSMatthew G. Knepley }
42475962854dSMatthew G. Knepley 
4248d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellMatrix(PetscInt c, const char name[], PetscInt rows, PetscInt cols, const PetscScalar A[])
4249d71ae5a4SJacob Faibussowitsch {
42501b30c384SMatthew G Knepley   PetscInt f, g;
42517da65231SMatthew G Knepley 
42527da65231SMatthew G Knepley   PetscFunctionBegin;
425363a3b9bcSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
42541d47ebbbSSatish Balay   for (f = 0; f < rows; ++f) {
42559566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PETSC_COMM_SELF, "  |"));
425648a46eb9SPierre Jolivet     for (g = 0; g < cols; ++g) PetscCall(PetscPrintf(PETSC_COMM_SELF, " % 9.5g", (double)PetscRealPart(A[f * cols + g])));
42579566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PETSC_COMM_SELF, " |\n"));
42587da65231SMatthew G Knepley   }
42593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42607da65231SMatthew G Knepley }
4261e7c4fc90SDmitry Karpeev 
4262d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintLocalVec(DM dm, const char name[], PetscReal tol, Vec X)
4263d71ae5a4SJacob Faibussowitsch {
42640c5b8624SToby Isaac   PetscInt           localSize, bs;
42650c5b8624SToby Isaac   PetscMPIInt        size;
42660c5b8624SToby Isaac   Vec                x, xglob;
42670c5b8624SToby Isaac   const PetscScalar *xarray;
4268e759306cSMatthew G. Knepley 
4269e759306cSMatthew G. Knepley   PetscFunctionBegin;
42709566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
42719566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(X, &x));
42729566063dSJacob Faibussowitsch   PetscCall(VecCopy(X, x));
427393ec0da9SPierre Jolivet   PetscCall(VecFilter(x, tol));
42749566063dSJacob Faibussowitsch   PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "%s:\n", name));
42750c5b8624SToby Isaac   if (size > 1) {
42769566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(x, &localSize));
42779566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xarray));
42789566063dSJacob Faibussowitsch     PetscCall(VecGetBlockSize(x, &bs));
42799566063dSJacob Faibussowitsch     PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)dm), bs, localSize, PETSC_DETERMINE, xarray, &xglob));
42800c5b8624SToby Isaac   } else {
42810c5b8624SToby Isaac     xglob = x;
42820c5b8624SToby Isaac   }
42839566063dSJacob Faibussowitsch   PetscCall(VecView(xglob, PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)dm))));
42840c5b8624SToby Isaac   if (size > 1) {
42859566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xglob));
42869566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xarray));
42870c5b8624SToby Isaac   }
42889566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
42893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4290e759306cSMatthew G. Knepley }
4291e759306cSMatthew G. Knepley 
429288ed4aceSMatthew G Knepley /*@
4293bb7acecfSBarry Smith   DMGetLocalSection - Get the `PetscSection` encoding the local data layout for the `DM`.
429488ed4aceSMatthew G Knepley 
429588ed4aceSMatthew G Knepley   Input Parameter:
4296bb7acecfSBarry Smith . dm - The `DM`
429788ed4aceSMatthew G Knepley 
429888ed4aceSMatthew G Knepley   Output Parameter:
4299bb7acecfSBarry Smith . section - The `PetscSection`
430088ed4aceSMatthew G Knepley 
430120f4b53cSBarry Smith   Options Database Key:
4302bb7acecfSBarry Smith . -dm_petscsection_view - View the section created by the `DM`
4303e5893cccSMatthew G. Knepley 
430488ed4aceSMatthew G Knepley   Level: intermediate
430588ed4aceSMatthew G Knepley 
4306bb7acecfSBarry Smith   Note:
4307bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
430888ed4aceSMatthew G Knepley 
43091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetGlobalSection()`
431088ed4aceSMatthew G Knepley @*/
4311d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalSection(DM dm, PetscSection *section)
4312d71ae5a4SJacob Faibussowitsch {
431388ed4aceSMatthew G Knepley   PetscFunctionBegin;
431488ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
43154f572ea9SToby Isaac   PetscAssertPointer(section, 2);
43161bb6d2a8SBarry Smith   if (!dm->localSection && dm->ops->createlocalsection) {
4317e5e52638SMatthew G. Knepley     PetscInt d;
4318e5e52638SMatthew G. Knepley 
431945480ffeSMatthew G. Knepley     if (dm->setfromoptionscalled) {
432045480ffeSMatthew G. Knepley       PetscObject       obj = (PetscObject)dm;
432145480ffeSMatthew G. Knepley       PetscViewer       viewer;
432245480ffeSMatthew G. Knepley       PetscViewerFormat format;
432345480ffeSMatthew G. Knepley       PetscBool         flg;
432445480ffeSMatthew G. Knepley 
4325648c30bcSBarry Smith       PetscCall(PetscOptionsCreateViewer(PetscObjectComm(obj), obj->options, obj->prefix, "-dm_petscds_view", &viewer, &format, &flg));
43269566063dSJacob Faibussowitsch       if (flg) PetscCall(PetscViewerPushFormat(viewer, format));
432745480ffeSMatthew G. Knepley       for (d = 0; d < dm->Nds; ++d) {
43289566063dSJacob Faibussowitsch         PetscCall(PetscDSSetFromOptions(dm->probs[d].ds));
43299566063dSJacob Faibussowitsch         if (flg) PetscCall(PetscDSView(dm->probs[d].ds, viewer));
433045480ffeSMatthew G. Knepley       }
433145480ffeSMatthew G. Knepley       if (flg) {
43329566063dSJacob Faibussowitsch         PetscCall(PetscViewerFlush(viewer));
43339566063dSJacob Faibussowitsch         PetscCall(PetscViewerPopFormat(viewer));
4334648c30bcSBarry Smith         PetscCall(PetscViewerDestroy(&viewer));
433545480ffeSMatthew G. Knepley       }
433645480ffeSMatthew G. Knepley     }
4337dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm, createlocalsection);
43389566063dSJacob Faibussowitsch     if (dm->localSection) PetscCall(PetscObjectViewFromOptions((PetscObject)dm->localSection, NULL, "-dm_petscsection_view"));
43392f0f8703SMatthew G. Knepley   }
43401bb6d2a8SBarry Smith   *section = dm->localSection;
43413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
434288ed4aceSMatthew G Knepley }
434388ed4aceSMatthew G Knepley 
434488ed4aceSMatthew G Knepley /*@
4345bb7acecfSBarry Smith   DMSetLocalSection - Set the `PetscSection` encoding the local data layout for the `DM`.
434688ed4aceSMatthew G Knepley 
434788ed4aceSMatthew G Knepley   Input Parameters:
4348bb7acecfSBarry Smith + dm      - The `DM`
4349bb7acecfSBarry Smith - section - The `PetscSection`
435088ed4aceSMatthew G Knepley 
435188ed4aceSMatthew G Knepley   Level: intermediate
435288ed4aceSMatthew G Knepley 
4353bb7acecfSBarry Smith   Note:
4354bb7acecfSBarry Smith   Any existing Section will be destroyed
435588ed4aceSMatthew G Knepley 
43561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMSetGlobalSection()`
435788ed4aceSMatthew G Knepley @*/
4358d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLocalSection(DM dm, PetscSection section)
4359d71ae5a4SJacob Faibussowitsch {
4360c473ab19SMatthew G. Knepley   PetscInt numFields = 0;
4361af122d2aSMatthew G Knepley   PetscInt f;
436288ed4aceSMatthew G Knepley 
436388ed4aceSMatthew G Knepley   PetscFunctionBegin;
436488ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4365b9d85ea2SLisandro Dalcin   if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
43669566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)section));
43679566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->localSection));
43681bb6d2a8SBarry Smith   dm->localSection = section;
43699566063dSJacob Faibussowitsch   if (section) PetscCall(PetscSectionGetNumFields(dm->localSection, &numFields));
4370af122d2aSMatthew G Knepley   if (numFields) {
43719566063dSJacob Faibussowitsch     PetscCall(DMSetNumFields(dm, numFields));
4372af122d2aSMatthew G Knepley     for (f = 0; f < numFields; ++f) {
43730f21e855SMatthew G. Knepley       PetscObject disc;
4374af122d2aSMatthew G Knepley       const char *name;
4375af122d2aSMatthew G Knepley 
43769566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldName(dm->localSection, f, &name));
43779566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, f, NULL, &disc));
43789566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName(disc, name));
4379af122d2aSMatthew G Knepley     }
4380af122d2aSMatthew G Knepley   }
438150350c8eSStefano Zampini   /* The global section and the SectionSF will be rebuilt
438250350c8eSStefano Zampini      in the next call to DMGetGlobalSection() and DMGetSectionSF(). */
43839566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->globalSection));
438450350c8eSStefano Zampini   PetscCall(PetscSFDestroy(&dm->sectionSF));
438552947b74SStefano Zampini   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF));
438650350c8eSStefano Zampini 
438750350c8eSStefano Zampini   /* Clear scratch vectors */
438850350c8eSStefano Zampini   PetscCall(DMClearGlobalVectors(dm));
438950350c8eSStefano Zampini   PetscCall(DMClearLocalVectors(dm));
439050350c8eSStefano Zampini   PetscCall(DMClearNamedGlobalVectors(dm));
439150350c8eSStefano Zampini   PetscCall(DMClearNamedLocalVectors(dm));
43923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
439388ed4aceSMatthew G Knepley }
439488ed4aceSMatthew G Knepley 
4395adc21957SMatthew G. Knepley /*@C
4396d8b4a066SPierre Jolivet   DMCreateSectionPermutation - Create a permutation of the `PetscSection` chart and optionally a block structure.
4397adc21957SMatthew G. Knepley 
4398adc21957SMatthew G. Knepley   Input Parameter:
4399adc21957SMatthew G. Knepley . dm - The `DM`
4400adc21957SMatthew G. Knepley 
44019cde84edSJose E. Roman   Output Parameters:
4402adc21957SMatthew G. Knepley + perm        - A permutation of the mesh points in the chart
4403b6971eaeSBarry Smith - blockStarts - A high bit is set for the point that begins every block, or `NULL` for default blocking
4404adc21957SMatthew G. Knepley 
4405adc21957SMatthew G. Knepley   Level: developer
4406adc21957SMatthew G. Knepley 
4407adc21957SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMGetGlobalSection()`
4408adc21957SMatthew G. Knepley @*/
4409adc21957SMatthew G. Knepley PetscErrorCode DMCreateSectionPermutation(DM dm, IS *perm, PetscBT *blockStarts)
4410adc21957SMatthew G. Knepley {
4411adc21957SMatthew G. Knepley   PetscFunctionBegin;
4412adc21957SMatthew G. Knepley   *perm        = NULL;
4413adc21957SMatthew G. Knepley   *blockStarts = NULL;
4414adc21957SMatthew G. Knepley   PetscTryTypeMethod(dm, createsectionpermutation, perm, blockStarts);
4415adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
4416adc21957SMatthew G. Knepley }
4417adc21957SMatthew G. Knepley 
44189435951eSToby Isaac /*@
4419bb7acecfSBarry Smith   DMGetDefaultConstraints - Get the `PetscSection` and `Mat` that specify the local constraint interpolation. See `DMSetDefaultConstraints()` for a description of the purpose of constraint interpolation.
44209435951eSToby Isaac 
442120f4b53cSBarry Smith   not Collective
4422e228b242SToby Isaac 
44239435951eSToby Isaac   Input Parameter:
4424bb7acecfSBarry Smith . dm - The `DM`
44259435951eSToby Isaac 
4426d8d19677SJose E. Roman   Output Parameters:
442720f4b53cSBarry Smith + section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section.  Returns `NULL` if there are no local constraints.
442820f4b53cSBarry Smith . mat     - The `Mat` that interpolates local constraints: its width should be the layout size of the default section.  Returns `NULL` if there are no local constraints.
442979769bd5SJed Brown - bias    - Vector containing bias to be added to constrained dofs
44309435951eSToby Isaac 
44319435951eSToby Isaac   Level: advanced
44329435951eSToby Isaac 
4433bb7acecfSBarry Smith   Note:
4434bb7acecfSBarry Smith   This gets borrowed references, so the user should not destroy the `PetscSection`, `Mat`, or `Vec`.
44359435951eSToby Isaac 
44361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDefaultConstraints()`
44379435951eSToby Isaac @*/
4438d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDefaultConstraints(DM dm, PetscSection *section, Mat *mat, Vec *bias)
4439d71ae5a4SJacob Faibussowitsch {
44409435951eSToby Isaac   PetscFunctionBegin;
44419435951eSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4442dbbe0bcdSBarry Smith   if (!dm->defaultConstraint.section && !dm->defaultConstraint.mat && dm->ops->createdefaultconstraints) PetscUseTypeMethod(dm, createdefaultconstraints);
44433b8ba7d1SJed Brown   if (section) *section = dm->defaultConstraint.section;
44443b8ba7d1SJed Brown   if (mat) *mat = dm->defaultConstraint.mat;
444579769bd5SJed Brown   if (bias) *bias = dm->defaultConstraint.bias;
44463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
44479435951eSToby Isaac }
44489435951eSToby Isaac 
44499435951eSToby Isaac /*@
4450bb7acecfSBarry Smith   DMSetDefaultConstraints - Set the `PetscSection` and `Mat` that specify the local constraint interpolation.
44519435951eSToby Isaac 
445220f4b53cSBarry Smith   Collective
4453e228b242SToby Isaac 
44549435951eSToby Isaac   Input Parameters:
4455bb7acecfSBarry Smith + dm      - The `DM`
4456bb7acecfSBarry Smith . section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
445720f4b53cSBarry Smith . mat     - The `Mat` that interpolates local constraints: its width should be the layout size of the default section:  `NULL` indicates no constraints.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
445820f4b53cSBarry Smith - bias    - A bias vector to be added to constrained values in the local vector.  `NULL` indicates no bias.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
44599435951eSToby Isaac 
44609435951eSToby Isaac   Level: advanced
44619435951eSToby Isaac 
446220f4b53cSBarry Smith   Notes:
446320f4b53cSBarry Smith   If a constraint matrix is specified, then it is applied during `DMGlobalToLocalEnd()` when mode is `INSERT_VALUES`, `INSERT_BC_VALUES`, or `INSERT_ALL_VALUES`.  Without a constraint matrix, the local vector l returned by `DMGlobalToLocalEnd()` contains values that have been scattered from a global vector without modification; with a constraint matrix A, l is modified by computing c = A * l + bias, l[s[i]] = c[i], where the scatter s is defined by the `PetscSection` returned by `DMGetDefaultConstraints()`.
446420f4b53cSBarry Smith 
446520f4b53cSBarry Smith   If a constraint matrix is specified, then its adjoint is applied during `DMLocalToGlobalBegin()` when mode is `ADD_VALUES`, `ADD_BC_VALUES`, or `ADD_ALL_VALUES`.  Without a constraint matrix, the local vector l is accumulated into a global vector without modification; with a constraint matrix A, l is first modified by computing c[i] = l[s[i]], l[s[i]] = 0, l = l + A'*c, which is the adjoint of the operation described above.  Any bias, if specified, is ignored when accumulating.
446620f4b53cSBarry Smith 
4467bb7acecfSBarry Smith   This increments the references of the `PetscSection`, `Mat`, and `Vec`, so they user can destroy them.
44689435951eSToby Isaac 
44691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDefaultConstraints()`
44709435951eSToby Isaac @*/
4471d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDefaultConstraints(DM dm, PetscSection section, Mat mat, Vec bias)
4472d71ae5a4SJacob Faibussowitsch {
4473e228b242SToby Isaac   PetscMPIInt result;
44749435951eSToby Isaac 
44759435951eSToby Isaac   PetscFunctionBegin;
44769435951eSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4477e228b242SToby Isaac   if (section) {
4478e228b242SToby Isaac     PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
44799566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)section), &result));
44807a8be351SBarry Smith     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint section must have local communicator");
4481e228b242SToby Isaac   }
4482e228b242SToby Isaac   if (mat) {
4483e228b242SToby Isaac     PetscValidHeaderSpecific(mat, MAT_CLASSID, 3);
44849566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)mat), &result));
44857a8be351SBarry Smith     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint matrix must have local communicator");
4486e228b242SToby Isaac   }
448779769bd5SJed Brown   if (bias) {
448879769bd5SJed Brown     PetscValidHeaderSpecific(bias, VEC_CLASSID, 4);
44899566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)bias), &result));
449079769bd5SJed Brown     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint bias must have local communicator");
449179769bd5SJed Brown   }
44929566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)section));
44939566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->defaultConstraint.section));
44943b8ba7d1SJed Brown   dm->defaultConstraint.section = section;
44959566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)mat));
44969566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&dm->defaultConstraint.mat));
44973b8ba7d1SJed Brown   dm->defaultConstraint.mat = mat;
44989566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)bias));
44999566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&dm->defaultConstraint.bias));
450079769bd5SJed Brown   dm->defaultConstraint.bias = bias;
45013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
45029435951eSToby Isaac }
45039435951eSToby Isaac 
4504497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG)
4505507e4973SMatthew G. Knepley /*
4506bb7acecfSBarry Smith   DMDefaultSectionCheckConsistency - Check the consistentcy of the global and local sections. Generates and error if they are not consistent.
4507507e4973SMatthew G. Knepley 
4508507e4973SMatthew G. Knepley   Input Parameters:
4509bb7acecfSBarry Smith + dm - The `DM`
4510bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout
4511bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout
4512507e4973SMatthew G. Knepley 
4513507e4973SMatthew G. Knepley   Level: intermediate
4514507e4973SMatthew G. Knepley 
45151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`
4516507e4973SMatthew G. Knepley */
4517d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(DM dm, PetscSection localSection, PetscSection globalSection)
4518d71ae5a4SJacob Faibussowitsch {
4519507e4973SMatthew G. Knepley   MPI_Comm        comm;
4520507e4973SMatthew G. Knepley   PetscLayout     layout;
4521507e4973SMatthew G. Knepley   const PetscInt *ranges;
4522507e4973SMatthew G. Knepley   PetscInt        pStart, pEnd, p, nroots;
4523507e4973SMatthew G. Knepley   PetscMPIInt     size, rank;
4524507e4973SMatthew G. Knepley   PetscBool       valid = PETSC_TRUE, gvalid;
4525507e4973SMatthew G. Knepley 
4526507e4973SMatthew G. Knepley   PetscFunctionBegin;
45279566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
4528507e4973SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
45299566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
45309566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
45319566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(globalSection, &pStart, &pEnd));
45329566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &nroots));
45339566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &layout));
45349566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(layout, 1));
45359566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(layout, nroots));
45369566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(layout));
45379566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(layout, &ranges));
4538507e4973SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
4539f741bcd2SMatthew G. Knepley     PetscInt dof, cdof, off, gdof, gcdof, goff, gsize, d;
4540507e4973SMatthew G. Knepley 
45419566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(localSection, p, &dof));
45429566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(localSection, p, &off));
45439566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetConstraintDof(localSection, p, &cdof));
45449566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(globalSection, p, &gdof));
45459566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetConstraintDof(globalSection, p, &gcdof));
45469566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(globalSection, p, &goff));
4547507e4973SMatthew G. Knepley     if (!gdof) continue; /* Censored point */
45489371c9d4SSatish Balay     if ((gdof < 0 ? -(gdof + 1) : gdof) != dof) {
45499371c9d4SSatish Balay       PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local dof %" PetscInt_FMT "\n", rank, gdof, p, dof));
45509371c9d4SSatish Balay       valid = PETSC_FALSE;
45519371c9d4SSatish Balay     }
45529371c9d4SSatish Balay     if (gcdof && (gcdof != cdof)) {
45539371c9d4SSatish Balay       PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global constraints %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local constraints %" PetscInt_FMT "\n", rank, gcdof, p, cdof));
45549371c9d4SSatish Balay       valid = PETSC_FALSE;
45559371c9d4SSatish Balay     }
4556507e4973SMatthew G. Knepley     if (gdof < 0) {
4557507e4973SMatthew G. Knepley       gsize = gdof < 0 ? -(gdof + 1) - gcdof : gdof - gcdof;
4558507e4973SMatthew G. Knepley       for (d = 0; d < gsize; ++d) {
4559507e4973SMatthew G. Knepley         PetscInt offset = -(goff + 1) + d, r;
4560507e4973SMatthew G. Knepley 
45619566063dSJacob Faibussowitsch         PetscCall(PetscFindInt(offset, size + 1, ranges, &r));
4562507e4973SMatthew G. Knepley         if (r < 0) r = -(r + 2);
45639371c9d4SSatish Balay         if ((r < 0) || (r >= size)) {
45649371c9d4SSatish Balay           PetscCall(PetscSynchronizedPrintf(comm, "[%d]Point %" PetscInt_FMT " mapped to invalid process %" PetscInt_FMT " (%" PetscInt_FMT ", %" PetscInt_FMT ")\n", rank, p, r, gdof, goff));
45659371c9d4SSatish Balay           valid = PETSC_FALSE;
45669371c9d4SSatish Balay           break;
45679371c9d4SSatish Balay         }
4568507e4973SMatthew G. Knepley       }
4569507e4973SMatthew G. Knepley     }
4570507e4973SMatthew G. Knepley   }
45719566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&layout));
45729566063dSJacob Faibussowitsch   PetscCall(PetscSynchronizedFlush(comm, NULL));
4573462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&valid, &gvalid, 1, MPIU_BOOL, MPI_LAND, comm));
4574507e4973SMatthew G. Knepley   if (!gvalid) {
45759566063dSJacob Faibussowitsch     PetscCall(DMView(dm, NULL));
4576507e4973SMatthew G. Knepley     SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Inconsistent local and global sections");
4577507e4973SMatthew G. Knepley   }
45783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4579507e4973SMatthew G. Knepley }
4580f741bcd2SMatthew G. Knepley #endif
4581507e4973SMatthew G. Knepley 
458290df3356SJames Wright PetscErrorCode DMGetIsoperiodicPointSF_Internal(DM dm, PetscSF *sf)
45836725e60dSJed Brown {
45846725e60dSJed Brown   PetscErrorCode (*f)(DM, PetscSF *);
45854d86920dSPierre Jolivet 
45866725e60dSJed Brown   PetscFunctionBegin;
45876725e60dSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
45884f572ea9SToby Isaac   PetscAssertPointer(sf, 2);
45895f06a3ddSJed Brown   PetscCall(PetscObjectQueryFunction((PetscObject)dm, "DMGetIsoperiodicPointSF_C", &f));
45906725e60dSJed Brown   if (f) PetscCall(f(dm, sf));
45916725e60dSJed Brown   else *sf = dm->sf;
45923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
45936725e60dSJed Brown }
45946725e60dSJed Brown 
459588ed4aceSMatthew G Knepley /*@
4596bb7acecfSBarry Smith   DMGetGlobalSection - Get the `PetscSection` encoding the global data layout for the `DM`.
459788ed4aceSMatthew G Knepley 
459820f4b53cSBarry Smith   Collective
45998b1ab98fSJed Brown 
460088ed4aceSMatthew G Knepley   Input Parameter:
4601bb7acecfSBarry Smith . dm - The `DM`
460288ed4aceSMatthew G Knepley 
460388ed4aceSMatthew G Knepley   Output Parameter:
4604bb7acecfSBarry Smith . section - The `PetscSection`
460588ed4aceSMatthew G Knepley 
460688ed4aceSMatthew G Knepley   Level: intermediate
460788ed4aceSMatthew G Knepley 
4608bb7acecfSBarry Smith   Note:
4609bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
461088ed4aceSMatthew G Knepley 
46111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()`
461288ed4aceSMatthew G Knepley @*/
4613d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetGlobalSection(DM dm, PetscSection *section)
4614d71ae5a4SJacob Faibussowitsch {
461588ed4aceSMatthew G Knepley   PetscFunctionBegin;
461688ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
46174f572ea9SToby Isaac   PetscAssertPointer(section, 2);
46181bb6d2a8SBarry Smith   if (!dm->globalSection) {
4619fd59a867SMatthew G. Knepley     PetscSection s;
46206725e60dSJed Brown     PetscSF      sf;
4621fd59a867SMatthew G. Knepley 
46229566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &s));
46237a8be351SBarry Smith     PetscCheck(s, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a default PetscSection in order to create a global PetscSection");
46247a8be351SBarry Smith     PetscCheck(dm->sf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a point PetscSF in order to create a global PetscSection");
46255f06a3ddSJed Brown     PetscCall(DMGetIsoperiodicPointSF_Internal(dm, &sf));
4626eb9d3e4dSMatthew G. Knepley     PetscCall(PetscSectionCreateGlobalSection(s, sf, PETSC_TRUE, PETSC_FALSE, PETSC_FALSE, &dm->globalSection));
46279566063dSJacob Faibussowitsch     PetscCall(PetscLayoutDestroy(&dm->map));
46289566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetValueLayout(PetscObjectComm((PetscObject)dm), dm->globalSection, &dm->map));
46299566063dSJacob Faibussowitsch     PetscCall(PetscSectionViewFromOptions(dm->globalSection, NULL, "-global_section_view"));
463088ed4aceSMatthew G Knepley   }
46311bb6d2a8SBarry Smith   *section = dm->globalSection;
46323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
463388ed4aceSMatthew G Knepley }
463488ed4aceSMatthew G Knepley 
4635b21d0597SMatthew G Knepley /*@
4636bb7acecfSBarry Smith   DMSetGlobalSection - Set the `PetscSection` encoding the global data layout for the `DM`.
4637b21d0597SMatthew G Knepley 
4638b21d0597SMatthew G Knepley   Input Parameters:
4639bb7acecfSBarry Smith + dm      - The `DM`
46402fe279fdSBarry Smith - section - The PetscSection, or `NULL`
4641b21d0597SMatthew G Knepley 
4642b21d0597SMatthew G Knepley   Level: intermediate
4643b21d0597SMatthew G Knepley 
4644bb7acecfSBarry Smith   Note:
4645bb7acecfSBarry Smith   Any existing `PetscSection` will be destroyed
4646b21d0597SMatthew G Knepley 
46471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetGlobalSection()`, `DMSetLocalSection()`
4648b21d0597SMatthew G Knepley @*/
4649d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetGlobalSection(DM dm, PetscSection section)
4650d71ae5a4SJacob Faibussowitsch {
4651b21d0597SMatthew G Knepley   PetscFunctionBegin;
4652b21d0597SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
46535080bbdbSMatthew G Knepley   if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
46549566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)section));
46559566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->globalSection));
46561bb6d2a8SBarry Smith   dm->globalSection = section;
4657497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG)
46589566063dSJacob Faibussowitsch   if (section) PetscCall(DMDefaultSectionCheckConsistency_Internal(dm, dm->localSection, section));
4659507e4973SMatthew G. Knepley #endif
466050350c8eSStefano Zampini   /* Clear global scratch vectors and sectionSF */
466150350c8eSStefano Zampini   PetscCall(PetscSFDestroy(&dm->sectionSF));
466252947b74SStefano Zampini   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF));
466350350c8eSStefano Zampini   PetscCall(DMClearGlobalVectors(dm));
466450350c8eSStefano Zampini   PetscCall(DMClearNamedGlobalVectors(dm));
46653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4666b21d0597SMatthew G Knepley }
4667b21d0597SMatthew G Knepley 
466888ed4aceSMatthew G Knepley /*@
4669bb7acecfSBarry Smith   DMGetSectionSF - Get the `PetscSF` encoding the parallel dof overlap for the `DM`. If it has not been set,
4670bb7acecfSBarry Smith   it is created from the default `PetscSection` layouts in the `DM`.
467188ed4aceSMatthew G Knepley 
467288ed4aceSMatthew G Knepley   Input Parameter:
4673bb7acecfSBarry Smith . dm - The `DM`
467488ed4aceSMatthew G Knepley 
467588ed4aceSMatthew G Knepley   Output Parameter:
4676bb7acecfSBarry Smith . sf - The `PetscSF`
467788ed4aceSMatthew G Knepley 
467888ed4aceSMatthew G Knepley   Level: intermediate
467988ed4aceSMatthew G Knepley 
4680bb7acecfSBarry Smith   Note:
4681bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
468288ed4aceSMatthew G Knepley 
46831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetSectionSF()`, `DMCreateSectionSF()`
468488ed4aceSMatthew G Knepley @*/
4685d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSectionSF(DM dm, PetscSF *sf)
4686d71ae5a4SJacob Faibussowitsch {
468788ed4aceSMatthew G Knepley   PetscInt nroots;
468888ed4aceSMatthew G Knepley 
468988ed4aceSMatthew G Knepley   PetscFunctionBegin;
469088ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
46914f572ea9SToby Isaac   PetscAssertPointer(sf, 2);
469248a46eb9SPierre Jolivet   if (!dm->sectionSF) PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF));
46939566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(dm->sectionSF, &nroots, NULL, NULL, NULL));
469488ed4aceSMatthew G Knepley   if (nroots < 0) {
469588ed4aceSMatthew G Knepley     PetscSection section, gSection;
469688ed4aceSMatthew G Knepley 
46979566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
469831ea6d37SMatthew G Knepley     if (section) {
46999566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalSection(dm, &gSection));
47009566063dSJacob Faibussowitsch       PetscCall(DMCreateSectionSF(dm, section, gSection));
470131ea6d37SMatthew G Knepley     } else {
47020298fd71SBarry Smith       *sf = NULL;
47033ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
470431ea6d37SMatthew G Knepley     }
470588ed4aceSMatthew G Knepley   }
47061bb6d2a8SBarry Smith   *sf = dm->sectionSF;
47073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
470888ed4aceSMatthew G Knepley }
470988ed4aceSMatthew G Knepley 
471088ed4aceSMatthew G Knepley /*@
4711bb7acecfSBarry Smith   DMSetSectionSF - Set the `PetscSF` encoding the parallel dof overlap for the `DM`
471288ed4aceSMatthew G Knepley 
471388ed4aceSMatthew G Knepley   Input Parameters:
4714bb7acecfSBarry Smith + dm - The `DM`
4715bb7acecfSBarry Smith - sf - The `PetscSF`
471688ed4aceSMatthew G Knepley 
471788ed4aceSMatthew G Knepley   Level: intermediate
471888ed4aceSMatthew G Knepley 
4719bb7acecfSBarry Smith   Note:
4720bb7acecfSBarry Smith   Any previous `PetscSF` is destroyed
472188ed4aceSMatthew G Knepley 
47221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMCreateSectionSF()`
472388ed4aceSMatthew G Knepley @*/
4724d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSectionSF(DM dm, PetscSF sf)
4725d71ae5a4SJacob Faibussowitsch {
472688ed4aceSMatthew G Knepley   PetscFunctionBegin;
472788ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4728b9d85ea2SLisandro Dalcin   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
47299566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)sf));
47309566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&dm->sectionSF));
47311bb6d2a8SBarry Smith   dm->sectionSF = sf;
47323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
473388ed4aceSMatthew G Knepley }
473488ed4aceSMatthew G Knepley 
4735cc4c1da9SBarry Smith /*@
4736bb7acecfSBarry Smith   DMCreateSectionSF - Create the `PetscSF` encoding the parallel dof overlap for the `DM` based upon the `PetscSection`s
473788ed4aceSMatthew G Knepley   describing the data layout.
473888ed4aceSMatthew G Knepley 
473988ed4aceSMatthew G Knepley   Input Parameters:
4740bb7acecfSBarry Smith + dm            - The `DM`
4741bb7acecfSBarry Smith . localSection  - `PetscSection` describing the local data layout
4742bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout
474388ed4aceSMatthew G Knepley 
47441bb6d2a8SBarry Smith   Level: developer
47451bb6d2a8SBarry Smith 
4746bb7acecfSBarry Smith   Note:
4747bb7acecfSBarry Smith   One usually uses `DMGetSectionSF()` to obtain the `PetscSF`
4748bb7acecfSBarry Smith 
474973ff1848SBarry Smith   Developer Note:
4750bb7acecfSBarry Smith   Since this routine has for arguments the two sections from the `DM` and puts the resulting `PetscSF`
4751bb7acecfSBarry Smith   directly into the `DM`, perhaps this function should not take the local and global sections as
4752b6971eaeSBarry Smith   input and should just obtain them from the `DM`? Plus PETSc creation functions return the thing
4753b6971eaeSBarry Smith   they create, this returns nothing
47541bb6d2a8SBarry Smith 
47551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMGetLocalSection()`, `DMGetGlobalSection()`
475688ed4aceSMatthew G Knepley @*/
4757d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSectionSF(DM dm, PetscSection localSection, PetscSection globalSection)
4758d71ae5a4SJacob Faibussowitsch {
475988ed4aceSMatthew G Knepley   PetscFunctionBegin;
476088ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
47619566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphSection(dm->sectionSF, localSection, globalSection));
47623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
476388ed4aceSMatthew G Knepley }
4764af122d2aSMatthew G Knepley 
4765b21d0597SMatthew G Knepley /*@
4766bb7acecfSBarry Smith   DMGetPointSF - Get the `PetscSF` encoding the parallel section point overlap for the `DM`.
4767bb7acecfSBarry Smith 
4768bb7acecfSBarry Smith   Not collective but the resulting `PetscSF` is collective
4769b21d0597SMatthew G Knepley 
4770b21d0597SMatthew G Knepley   Input Parameter:
4771bb7acecfSBarry Smith . dm - The `DM`
4772b21d0597SMatthew G Knepley 
4773b21d0597SMatthew G Knepley   Output Parameter:
4774bb7acecfSBarry Smith . sf - The `PetscSF`
4775b21d0597SMatthew G Knepley 
4776b21d0597SMatthew G Knepley   Level: intermediate
4777b21d0597SMatthew G Knepley 
4778bb7acecfSBarry Smith   Note:
4779bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
4780b21d0597SMatthew G Knepley 
47811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()`
4782b21d0597SMatthew G Knepley @*/
4783d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetPointSF(DM dm, PetscSF *sf)
4784d71ae5a4SJacob Faibussowitsch {
4785b21d0597SMatthew G Knepley   PetscFunctionBegin;
4786b21d0597SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
47874f572ea9SToby Isaac   PetscAssertPointer(sf, 2);
4788b21d0597SMatthew G Knepley   *sf = dm->sf;
47893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4790b21d0597SMatthew G Knepley }
4791b21d0597SMatthew G Knepley 
4792057b4bcdSMatthew G Knepley /*@
4793bb7acecfSBarry Smith   DMSetPointSF - Set the `PetscSF` encoding the parallel section point overlap for the `DM`.
4794bb7acecfSBarry Smith 
479520f4b53cSBarry Smith   Collective
4796057b4bcdSMatthew G Knepley 
4797057b4bcdSMatthew G Knepley   Input Parameters:
4798bb7acecfSBarry Smith + dm - The `DM`
4799bb7acecfSBarry Smith - sf - The `PetscSF`
4800057b4bcdSMatthew G Knepley 
4801057b4bcdSMatthew G Knepley   Level: intermediate
4802057b4bcdSMatthew G Knepley 
48031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()`
4804057b4bcdSMatthew G Knepley @*/
4805d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetPointSF(DM dm, PetscSF sf)
4806d71ae5a4SJacob Faibussowitsch {
4807057b4bcdSMatthew G Knepley   PetscFunctionBegin;
4808057b4bcdSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4809b9d85ea2SLisandro Dalcin   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
48109566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)sf));
48119566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&dm->sf));
4812057b4bcdSMatthew G Knepley   dm->sf = sf;
48133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4814057b4bcdSMatthew G Knepley }
4815057b4bcdSMatthew G Knepley 
48164f37162bSMatthew G. Knepley /*@
4817bb7acecfSBarry Smith   DMGetNaturalSF - Get the `PetscSF` encoding the map back to the original mesh ordering
48184f37162bSMatthew G. Knepley 
48194f37162bSMatthew G. Knepley   Input Parameter:
4820bb7acecfSBarry Smith . dm - The `DM`
48214f37162bSMatthew G. Knepley 
48224f37162bSMatthew G. Knepley   Output Parameter:
4823bb7acecfSBarry Smith . sf - The `PetscSF`
48244f37162bSMatthew G. Knepley 
48254f37162bSMatthew G. Knepley   Level: intermediate
48264f37162bSMatthew G. Knepley 
4827bb7acecfSBarry Smith   Note:
4828bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
48294f37162bSMatthew G. Knepley 
48301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()`
48314f37162bSMatthew G. Knepley @*/
4832d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNaturalSF(DM dm, PetscSF *sf)
4833d71ae5a4SJacob Faibussowitsch {
48344f37162bSMatthew G. Knepley   PetscFunctionBegin;
48354f37162bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
48364f572ea9SToby Isaac   PetscAssertPointer(sf, 2);
48374f37162bSMatthew G. Knepley   *sf = dm->sfNatural;
48383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48394f37162bSMatthew G. Knepley }
48404f37162bSMatthew G. Knepley 
48414f37162bSMatthew G. Knepley /*@
48424f37162bSMatthew G. Knepley   DMSetNaturalSF - Set the PetscSF encoding the map back to the original mesh ordering
48434f37162bSMatthew G. Knepley 
48444f37162bSMatthew G. Knepley   Input Parameters:
48454f37162bSMatthew G. Knepley + dm - The DM
48464f37162bSMatthew G. Knepley - sf - The PetscSF
48474f37162bSMatthew G. Knepley 
48484f37162bSMatthew G. Knepley   Level: intermediate
48494f37162bSMatthew G. Knepley 
48501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()`
48514f37162bSMatthew G. Knepley @*/
4852d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNaturalSF(DM dm, PetscSF sf)
4853d71ae5a4SJacob Faibussowitsch {
48544f37162bSMatthew G. Knepley   PetscFunctionBegin;
48554f37162bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
48564f37162bSMatthew G. Knepley   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
48579566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)sf));
48589566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&dm->sfNatural));
48594f37162bSMatthew G. Knepley   dm->sfNatural = sf;
48603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48614f37162bSMatthew G. Knepley }
48624f37162bSMatthew G. Knepley 
4863d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetDefaultAdjacency_Private(DM dm, PetscInt f, PetscObject disc)
4864d71ae5a4SJacob Faibussowitsch {
486534aa8a36SMatthew G. Knepley   PetscClassId id;
486634aa8a36SMatthew G. Knepley 
486734aa8a36SMatthew G. Knepley   PetscFunctionBegin;
48689566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetClassId(disc, &id));
486934aa8a36SMatthew G. Knepley   if (id == PETSCFE_CLASSID) {
48709566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE));
487134aa8a36SMatthew G. Knepley   } else if (id == PETSCFV_CLASSID) {
48729566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, f, PETSC_TRUE, PETSC_FALSE));
487317c1d62eSMatthew G. Knepley   } else {
48749566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE));
487534aa8a36SMatthew G. Knepley   }
48763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
487734aa8a36SMatthew G. Knepley }
487834aa8a36SMatthew G. Knepley 
4879d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFieldEnlarge_Static(DM dm, PetscInt NfNew)
4880d71ae5a4SJacob Faibussowitsch {
488144a7f3ddSMatthew G. Knepley   RegionField *tmpr;
488244a7f3ddSMatthew G. Knepley   PetscInt     Nf = dm->Nf, f;
488344a7f3ddSMatthew G. Knepley 
488444a7f3ddSMatthew G. Knepley   PetscFunctionBegin;
48853ba16761SJacob Faibussowitsch   if (Nf >= NfNew) PetscFunctionReturn(PETSC_SUCCESS);
48869566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(NfNew, &tmpr));
488744a7f3ddSMatthew G. Knepley   for (f = 0; f < Nf; ++f) tmpr[f] = dm->fields[f];
48889371c9d4SSatish Balay   for (f = Nf; f < NfNew; ++f) {
48899371c9d4SSatish Balay     tmpr[f].disc        = NULL;
48909371c9d4SSatish Balay     tmpr[f].label       = NULL;
48919371c9d4SSatish Balay     tmpr[f].avoidTensor = PETSC_FALSE;
48929371c9d4SSatish Balay   }
48939566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->fields));
489444a7f3ddSMatthew G. Knepley   dm->Nf     = NfNew;
489544a7f3ddSMatthew G. Knepley   dm->fields = tmpr;
48963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
489744a7f3ddSMatthew G. Knepley }
489844a7f3ddSMatthew G. Knepley 
489944a7f3ddSMatthew G. Knepley /*@
490020f4b53cSBarry Smith   DMClearFields - Remove all fields from the `DM`
490144a7f3ddSMatthew G. Knepley 
490220f4b53cSBarry Smith   Logically Collective
490344a7f3ddSMatthew G. Knepley 
490444a7f3ddSMatthew G. Knepley   Input Parameter:
490520f4b53cSBarry Smith . dm - The `DM`
490644a7f3ddSMatthew G. Knepley 
490744a7f3ddSMatthew G. Knepley   Level: intermediate
490844a7f3ddSMatthew G. Knepley 
49091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetNumFields()`, `DMSetField()`
491044a7f3ddSMatthew G. Knepley @*/
4911d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearFields(DM dm)
4912d71ae5a4SJacob Faibussowitsch {
491344a7f3ddSMatthew G. Knepley   PetscInt f;
491444a7f3ddSMatthew G. Knepley 
491544a7f3ddSMatthew G. Knepley   PetscFunctionBegin;
491644a7f3ddSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
491744a7f3ddSMatthew G. Knepley   for (f = 0; f < dm->Nf; ++f) {
49189566063dSJacob Faibussowitsch     PetscCall(PetscObjectDestroy(&dm->fields[f].disc));
49199566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&dm->fields[f].label));
492044a7f3ddSMatthew G. Knepley   }
49219566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->fields));
492244a7f3ddSMatthew G. Knepley   dm->fields = NULL;
492344a7f3ddSMatthew G. Knepley   dm->Nf     = 0;
49243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
492544a7f3ddSMatthew G. Knepley }
492644a7f3ddSMatthew G. Knepley 
4927689b5837SMatthew G. Knepley /*@
492820f4b53cSBarry Smith   DMGetNumFields - Get the number of fields in the `DM`
4929689b5837SMatthew G. Knepley 
493020f4b53cSBarry Smith   Not Collective
4931689b5837SMatthew G. Knepley 
4932689b5837SMatthew G. Knepley   Input Parameter:
493320f4b53cSBarry Smith . dm - The `DM`
4934689b5837SMatthew G. Knepley 
4935689b5837SMatthew G. Knepley   Output Parameter:
493660225df5SJacob Faibussowitsch . numFields - The number of fields
4937689b5837SMatthew G. Knepley 
4938689b5837SMatthew G. Knepley   Level: intermediate
4939689b5837SMatthew G. Knepley 
49401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNumFields()`, `DMSetField()`
4941689b5837SMatthew G. Knepley @*/
4942d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumFields(DM dm, PetscInt *numFields)
4943d71ae5a4SJacob Faibussowitsch {
49440f21e855SMatthew G. Knepley   PetscFunctionBegin;
49450f21e855SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
49464f572ea9SToby Isaac   PetscAssertPointer(numFields, 2);
494744a7f3ddSMatthew G. Knepley   *numFields = dm->Nf;
49483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4949af122d2aSMatthew G Knepley }
4950af122d2aSMatthew G Knepley 
4951689b5837SMatthew G. Knepley /*@
495220f4b53cSBarry Smith   DMSetNumFields - Set the number of fields in the `DM`
4953689b5837SMatthew G. Knepley 
495420f4b53cSBarry Smith   Logically Collective
4955689b5837SMatthew G. Knepley 
4956689b5837SMatthew G. Knepley   Input Parameters:
495720f4b53cSBarry Smith + dm        - The `DM`
495860225df5SJacob Faibussowitsch - numFields - The number of fields
4959689b5837SMatthew G. Knepley 
4960689b5837SMatthew G. Knepley   Level: intermediate
4961689b5837SMatthew G. Knepley 
49621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetField()`
4963689b5837SMatthew G. Knepley @*/
4964d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNumFields(DM dm, PetscInt numFields)
4965d71ae5a4SJacob Faibussowitsch {
49660f21e855SMatthew G. Knepley   PetscInt Nf, f;
4967af122d2aSMatthew G Knepley 
4968af122d2aSMatthew G Knepley   PetscFunctionBegin;
4969af122d2aSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
49709566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
49710f21e855SMatthew G. Knepley   for (f = Nf; f < numFields; ++f) {
49720f21e855SMatthew G. Knepley     PetscContainer obj;
49730f21e855SMatthew G. Knepley 
49749566063dSJacob Faibussowitsch     PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject)dm), &obj));
49759566063dSJacob Faibussowitsch     PetscCall(DMAddField(dm, NULL, (PetscObject)obj));
49769566063dSJacob Faibussowitsch     PetscCall(PetscContainerDestroy(&obj));
4977af122d2aSMatthew G Knepley   }
49783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4979af122d2aSMatthew G Knepley }
4980af122d2aSMatthew G Knepley 
4981c1929be8SMatthew G. Knepley /*@
4982bb7acecfSBarry Smith   DMGetField - Return the `DMLabel` and discretization object for a given `DM` field
4983c1929be8SMatthew G. Knepley 
498420f4b53cSBarry Smith   Not Collective
4985c1929be8SMatthew G. Knepley 
4986c1929be8SMatthew G. Knepley   Input Parameters:
4987bb7acecfSBarry Smith + dm - The `DM`
4988c1929be8SMatthew G. Knepley - f  - The field number
4989c1929be8SMatthew G. Knepley 
499044a7f3ddSMatthew G. Knepley   Output Parameters:
499120f4b53cSBarry Smith + label - The label indicating the support of the field, or `NULL` for the entire mesh (pass in `NULL` if not needed)
499220f4b53cSBarry Smith - disc  - The discretization object (pass in `NULL` if not needed)
4993c1929be8SMatthew G. Knepley 
499444a7f3ddSMatthew G. Knepley   Level: intermediate
4995c1929be8SMatthew G. Knepley 
49961cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`
4997c1929be8SMatthew G. Knepley @*/
4998d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetField(DM dm, PetscInt f, DMLabel *label, PetscObject *disc)
4999d71ae5a4SJacob Faibussowitsch {
5000af122d2aSMatthew G Knepley   PetscFunctionBegin;
5001af122d2aSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
50024f572ea9SToby Isaac   PetscAssertPointer(disc, 4);
50037a8be351SBarry Smith   PetscCheck((f >= 0) && (f < dm->Nf), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, dm->Nf);
500444a7f3ddSMatthew G. Knepley   if (label) *label = dm->fields[f].label;
5005bb7acecfSBarry Smith   if (disc) *disc = dm->fields[f].disc;
50063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5007decb47aaSMatthew G. Knepley }
5008decb47aaSMatthew G. Knepley 
5009083401c6SMatthew G. Knepley /* Does not clear the DS */
5010d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField_Internal(DM dm, PetscInt f, DMLabel label, PetscObject disc)
5011d71ae5a4SJacob Faibussowitsch {
5012083401c6SMatthew G. Knepley   PetscFunctionBegin;
50139566063dSJacob Faibussowitsch   PetscCall(DMFieldEnlarge_Static(dm, f + 1));
50149566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&dm->fields[f].label));
50159566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&dm->fields[f].disc));
5016083401c6SMatthew G. Knepley   dm->fields[f].label = label;
5017bb7acecfSBarry Smith   dm->fields[f].disc  = disc;
50189566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
5019835f2295SStefano Zampini   PetscCall(PetscObjectReference(disc));
50203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5021083401c6SMatthew G. Knepley }
5022083401c6SMatthew G. Knepley 
5023ffeef943SBarry Smith /*@
5024bb7acecfSBarry Smith   DMSetField - Set the discretization object for a given `DM` field. Usually one would call `DMAddField()` which automatically handles
5025bb7acecfSBarry Smith   the field numbering.
5026c1929be8SMatthew G. Knepley 
502720f4b53cSBarry Smith   Logically Collective
5028c1929be8SMatthew G. Knepley 
5029c1929be8SMatthew G. Knepley   Input Parameters:
5030bb7acecfSBarry Smith + dm    - The `DM`
5031c1929be8SMatthew G. Knepley . f     - The field number
503220f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh
5033bb7acecfSBarry Smith - disc  - The discretization object
5034c1929be8SMatthew G. Knepley 
503544a7f3ddSMatthew G. Knepley   Level: intermediate
5036c1929be8SMatthew G. Knepley 
50371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`
5038c1929be8SMatthew G. Knepley @*/
5039d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField(DM dm, PetscInt f, DMLabel label, PetscObject disc)
5040d71ae5a4SJacob Faibussowitsch {
5041decb47aaSMatthew G. Knepley   PetscFunctionBegin;
5042decb47aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5043e5e52638SMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3);
5044bb7acecfSBarry Smith   PetscValidHeader(disc, 4);
50457a8be351SBarry Smith   PetscCheck(f >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be non-negative", f);
5046bb7acecfSBarry Smith   PetscCall(DMSetField_Internal(dm, f, label, disc));
5047bb7acecfSBarry Smith   PetscCall(DMSetDefaultAdjacency_Private(dm, f, disc));
50489566063dSJacob Faibussowitsch   PetscCall(DMClearDS(dm));
50493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
505044a7f3ddSMatthew G. Knepley }
505144a7f3ddSMatthew G. Knepley 
5052ffeef943SBarry Smith /*@
5053bb7acecfSBarry Smith   DMAddField - Add a field to a `DM` object. A field is a function space defined by of a set of discretization points (geometric entities)
5054bb7acecfSBarry Smith   and a discretization object that defines the function space associated with those points.
505544a7f3ddSMatthew G. Knepley 
505620f4b53cSBarry Smith   Logically Collective
505744a7f3ddSMatthew G. Knepley 
505844a7f3ddSMatthew G. Knepley   Input Parameters:
5059bb7acecfSBarry Smith + dm    - The `DM`
506020f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh
5061bb7acecfSBarry Smith - disc  - The discretization object
506244a7f3ddSMatthew G. Knepley 
506344a7f3ddSMatthew G. Knepley   Level: intermediate
506444a7f3ddSMatthew G. Knepley 
5065bb7acecfSBarry Smith   Notes:
5066bb7acecfSBarry Smith   The label already exists or will be added to the `DM` with `DMSetLabel()`.
5067bb7acecfSBarry Smith 
5068da81f932SPierre Jolivet   For example, a piecewise continuous pressure field can be defined by coefficients at the cell centers of a mesh and piecewise constant functions
5069bb7acecfSBarry Smith   within each cell. Thus a specific function in the space is defined by the combination of a `Vec` containing the coefficients, a `DM` defining the
5070bb7acecfSBarry Smith   geometry entities, a `DMLabel` indicating a subset of those geometric entities, and a discretization object, such as a `PetscFE`.
5071bb7acecfSBarry Smith 
5072ce78bad3SBarry Smith   Fortran Note:
5073ce78bad3SBarry Smith   Use the argument `PetscObjectCast(disc)` as the second argument
5074ce78bad3SBarry Smith 
50751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLabel()`, `DMSetField()`, `DMGetField()`, `PetscFE`
507644a7f3ddSMatthew G. Knepley @*/
5077d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddField(DM dm, DMLabel label, PetscObject disc)
5078d71ae5a4SJacob Faibussowitsch {
507944a7f3ddSMatthew G. Knepley   PetscInt Nf = dm->Nf;
508044a7f3ddSMatthew G. Knepley 
508144a7f3ddSMatthew G. Knepley   PetscFunctionBegin;
508244a7f3ddSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5083064a246eSJacob Faibussowitsch   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
5084bb7acecfSBarry Smith   PetscValidHeader(disc, 3);
50859566063dSJacob Faibussowitsch   PetscCall(DMFieldEnlarge_Static(dm, Nf + 1));
508644a7f3ddSMatthew G. Knepley   dm->fields[Nf].label = label;
5087bb7acecfSBarry Smith   dm->fields[Nf].disc  = disc;
50889566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
5089835f2295SStefano Zampini   PetscCall(PetscObjectReference(disc));
5090bb7acecfSBarry Smith   PetscCall(DMSetDefaultAdjacency_Private(dm, Nf, disc));
50919566063dSJacob Faibussowitsch   PetscCall(DMClearDS(dm));
50923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5093af122d2aSMatthew G Knepley }
50946636e97aSMatthew G Knepley 
5095e5e52638SMatthew G. Knepley /*@
5096e0b68406SMatthew Knepley   DMSetFieldAvoidTensor - Set flag to avoid defining the field on tensor cells
5097e0b68406SMatthew Knepley 
509820f4b53cSBarry Smith   Logically Collective
5099e0b68406SMatthew Knepley 
5100e0b68406SMatthew Knepley   Input Parameters:
5101bb7acecfSBarry Smith + dm          - The `DM`
5102e0b68406SMatthew Knepley . f           - The field index
5103bb7acecfSBarry Smith - avoidTensor - `PETSC_TRUE` to skip defining the field on tensor cells
5104e0b68406SMatthew Knepley 
5105e0b68406SMatthew Knepley   Level: intermediate
5106e0b68406SMatthew Knepley 
51071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()`
5108e0b68406SMatthew Knepley @*/
5109d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFieldAvoidTensor(DM dm, PetscInt f, PetscBool avoidTensor)
5110d71ae5a4SJacob Faibussowitsch {
5111e0b68406SMatthew Knepley   PetscFunctionBegin;
511263a3b9bcSJacob Faibussowitsch   PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf);
5113e0b68406SMatthew Knepley   dm->fields[f].avoidTensor = avoidTensor;
51143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5115e0b68406SMatthew Knepley }
5116e0b68406SMatthew Knepley 
5117e0b68406SMatthew Knepley /*@
5118e0b68406SMatthew Knepley   DMGetFieldAvoidTensor - Get flag to avoid defining the field on tensor cells
5119e0b68406SMatthew Knepley 
512020f4b53cSBarry Smith   Not Collective
5121e0b68406SMatthew Knepley 
5122e0b68406SMatthew Knepley   Input Parameters:
5123bb7acecfSBarry Smith + dm - The `DM`
5124e0b68406SMatthew Knepley - f  - The field index
5125e0b68406SMatthew Knepley 
5126e0b68406SMatthew Knepley   Output Parameter:
5127e0b68406SMatthew Knepley . avoidTensor - The flag to avoid defining the field on tensor cells
5128e0b68406SMatthew Knepley 
5129e0b68406SMatthew Knepley   Level: intermediate
5130e0b68406SMatthew Knepley 
513160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`, `DMGetField()`, `DMSetFieldAvoidTensor()`
5132e0b68406SMatthew Knepley @*/
5133d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFieldAvoidTensor(DM dm, PetscInt f, PetscBool *avoidTensor)
5134d71ae5a4SJacob Faibussowitsch {
5135e0b68406SMatthew Knepley   PetscFunctionBegin;
513663a3b9bcSJacob Faibussowitsch   PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf);
5137e0b68406SMatthew Knepley   *avoidTensor = dm->fields[f].avoidTensor;
51383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5139e0b68406SMatthew Knepley }
5140e0b68406SMatthew Knepley 
5141e0b68406SMatthew Knepley /*@
5142bb7acecfSBarry Smith   DMCopyFields - Copy the discretizations for the `DM` into another `DM`
5143e5e52638SMatthew G. Knepley 
514420f4b53cSBarry Smith   Collective
5145e5e52638SMatthew G. Knepley 
5146bb4b53efSMatthew G. Knepley   Input Parameters:
5147bb4b53efSMatthew G. Knepley + dm        - The `DM`
5148bb4b53efSMatthew G. Knepley . minDegree - Minimum degree for a discretization, or `PETSC_DETERMINE` for no limit
5149bb4b53efSMatthew G. Knepley - maxDegree - Maximum degree for a discretization, or `PETSC_DETERMINE` for no limit
5150e5e52638SMatthew G. Knepley 
5151e5e52638SMatthew G. Knepley   Output Parameter:
5152bb7acecfSBarry Smith . newdm - The `DM`
5153e5e52638SMatthew G. Knepley 
5154e5e52638SMatthew G. Knepley   Level: advanced
5155e5e52638SMatthew G. Knepley 
51561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetField()`, `DMSetField()`, `DMAddField()`, `DMCopyDS()`, `DMGetDS()`, `DMGetCellDS()`
5157e5e52638SMatthew G. Knepley @*/
5158bb4b53efSMatthew G. Knepley PetscErrorCode DMCopyFields(DM dm, PetscInt minDegree, PetscInt maxDegree, DM newdm)
5159d71ae5a4SJacob Faibussowitsch {
5160e5e52638SMatthew G. Knepley   PetscInt Nf, f;
5161e5e52638SMatthew G. Knepley 
5162e5e52638SMatthew G. Knepley   PetscFunctionBegin;
51633ba16761SJacob Faibussowitsch   if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS);
51649566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
51659566063dSJacob Faibussowitsch   PetscCall(DMClearFields(newdm));
5166e5e52638SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
5167e5e52638SMatthew G. Knepley     DMLabel      label;
5168e5e52638SMatthew G. Knepley     PetscObject  field;
5169bb4b53efSMatthew G. Knepley     PetscClassId id;
517034aa8a36SMatthew G. Knepley     PetscBool    useCone, useClosure;
5171e5e52638SMatthew G. Knepley 
51729566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, f, &label, &field));
5173bb4b53efSMatthew G. Knepley     PetscCall(PetscObjectGetClassId(field, &id));
5174bb4b53efSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
5175bb4b53efSMatthew G. Knepley       PetscFE newfe;
5176bb4b53efSMatthew G. Knepley 
5177bb4b53efSMatthew G. Knepley       PetscCall(PetscFELimitDegree((PetscFE)field, minDegree, maxDegree, &newfe));
5178bb4b53efSMatthew G. Knepley       PetscCall(DMSetField(newdm, f, label, (PetscObject)newfe));
5179bb4b53efSMatthew G. Knepley       PetscCall(PetscFEDestroy(&newfe));
5180bb4b53efSMatthew G. Knepley     } else {
51819566063dSJacob Faibussowitsch       PetscCall(DMSetField(newdm, f, label, field));
5182bb4b53efSMatthew G. Knepley     }
51839566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, f, &useCone, &useClosure));
51849566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(newdm, f, useCone, useClosure));
518534aa8a36SMatthew G. Knepley   }
51863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
518734aa8a36SMatthew G. Knepley }
518834aa8a36SMatthew G. Knepley 
518934aa8a36SMatthew G. Knepley /*@
519034aa8a36SMatthew G. Knepley   DMGetAdjacency - Returns the flags for determining variable influence
519134aa8a36SMatthew G. Knepley 
519220f4b53cSBarry Smith   Not Collective
519334aa8a36SMatthew G. Knepley 
519434aa8a36SMatthew G. Knepley   Input Parameters:
519520f4b53cSBarry Smith + dm - The `DM` object
519620f4b53cSBarry Smith - f  - The field number, or `PETSC_DEFAULT` for the default adjacency
519734aa8a36SMatthew G. Knepley 
5198d8d19677SJose E. Roman   Output Parameters:
519934aa8a36SMatthew G. Knepley + useCone    - Flag for variable influence starting with the cone operation
520034aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
520134aa8a36SMatthew G. Knepley 
520234aa8a36SMatthew G. Knepley   Level: developer
520334aa8a36SMatthew G. Knepley 
520420f4b53cSBarry Smith   Notes:
520520f4b53cSBarry Smith .vb
520620f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
520720f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
520820f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
520920f4b53cSBarry Smith .ve
521020f4b53cSBarry Smith   Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another.
521120f4b53cSBarry Smith 
52121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetAdjacency()`, `DMGetField()`, `DMSetField()`
521334aa8a36SMatthew G. Knepley @*/
5214d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAdjacency(DM dm, PetscInt f, PetscBool *useCone, PetscBool *useClosure)
5215d71ae5a4SJacob Faibussowitsch {
521634aa8a36SMatthew G. Knepley   PetscFunctionBegin;
521734aa8a36SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
52184f572ea9SToby Isaac   if (useCone) PetscAssertPointer(useCone, 3);
52194f572ea9SToby Isaac   if (useClosure) PetscAssertPointer(useClosure, 4);
522034aa8a36SMatthew G. Knepley   if (f < 0) {
522134aa8a36SMatthew G. Knepley     if (useCone) *useCone = dm->adjacency[0];
522234aa8a36SMatthew G. Knepley     if (useClosure) *useClosure = dm->adjacency[1];
522334aa8a36SMatthew G. Knepley   } else {
522434aa8a36SMatthew G. Knepley     PetscInt Nf;
522534aa8a36SMatthew G. Knepley 
52269566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
52277a8be351SBarry Smith     PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf);
522834aa8a36SMatthew G. Knepley     if (useCone) *useCone = dm->fields[f].adjacency[0];
522934aa8a36SMatthew G. Knepley     if (useClosure) *useClosure = dm->fields[f].adjacency[1];
523034aa8a36SMatthew G. Knepley   }
52313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
523234aa8a36SMatthew G. Knepley }
523334aa8a36SMatthew G. Knepley 
523434aa8a36SMatthew G. Knepley /*@
523534aa8a36SMatthew G. Knepley   DMSetAdjacency - Set the flags for determining variable influence
523634aa8a36SMatthew G. Knepley 
523720f4b53cSBarry Smith   Not Collective
523834aa8a36SMatthew G. Knepley 
523934aa8a36SMatthew G. Knepley   Input Parameters:
524020f4b53cSBarry Smith + dm         - The `DM` object
524134aa8a36SMatthew G. Knepley . f          - The field number
524234aa8a36SMatthew G. Knepley . useCone    - Flag for variable influence starting with the cone operation
524334aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
524434aa8a36SMatthew G. Knepley 
524534aa8a36SMatthew G. Knepley   Level: developer
524634aa8a36SMatthew G. Knepley 
524720f4b53cSBarry Smith   Notes:
524820f4b53cSBarry Smith .vb
524920f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
525020f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
525120f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
525220f4b53cSBarry Smith .ve
525320f4b53cSBarry Smith   Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another.
525420f4b53cSBarry Smith 
52551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetAdjacency()`, `DMGetField()`, `DMSetField()`
525634aa8a36SMatthew G. Knepley @*/
5257d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAdjacency(DM dm, PetscInt f, PetscBool useCone, PetscBool useClosure)
5258d71ae5a4SJacob Faibussowitsch {
525934aa8a36SMatthew G. Knepley   PetscFunctionBegin;
526034aa8a36SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
526134aa8a36SMatthew G. Knepley   if (f < 0) {
526234aa8a36SMatthew G. Knepley     dm->adjacency[0] = useCone;
526334aa8a36SMatthew G. Knepley     dm->adjacency[1] = useClosure;
526434aa8a36SMatthew G. Knepley   } else {
526534aa8a36SMatthew G. Knepley     PetscInt Nf;
526634aa8a36SMatthew G. Knepley 
52679566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
52687a8be351SBarry Smith     PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf);
526934aa8a36SMatthew G. Knepley     dm->fields[f].adjacency[0] = useCone;
527034aa8a36SMatthew G. Knepley     dm->fields[f].adjacency[1] = useClosure;
5271e5e52638SMatthew G. Knepley   }
52723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5273e5e52638SMatthew G. Knepley }
5274e5e52638SMatthew G. Knepley 
5275b0441da4SMatthew G. Knepley /*@
5276b0441da4SMatthew G. Knepley   DMGetBasicAdjacency - Returns the flags for determining variable influence, using either the default or field 0 if it is defined
5277b0441da4SMatthew G. Knepley 
5278b0441da4SMatthew G. Knepley   Not collective
5279b0441da4SMatthew G. Knepley 
5280f899ff85SJose E. Roman   Input Parameter:
528120f4b53cSBarry Smith . dm - The `DM` object
5282b0441da4SMatthew G. Knepley 
5283d8d19677SJose E. Roman   Output Parameters:
5284b0441da4SMatthew G. Knepley + useCone    - Flag for variable influence starting with the cone operation
5285b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
5286b0441da4SMatthew G. Knepley 
5287b0441da4SMatthew G. Knepley   Level: developer
5288b0441da4SMatthew G. Knepley 
528920f4b53cSBarry Smith   Notes:
529020f4b53cSBarry Smith .vb
529120f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
529220f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
529320f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
529420f4b53cSBarry Smith .ve
529520f4b53cSBarry Smith 
52961cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetBasicAdjacency()`, `DMGetField()`, `DMSetField()`
5297b0441da4SMatthew G. Knepley @*/
5298d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasicAdjacency(DM dm, PetscBool *useCone, PetscBool *useClosure)
5299d71ae5a4SJacob Faibussowitsch {
5300b0441da4SMatthew G. Knepley   PetscInt Nf;
5301b0441da4SMatthew G. Knepley 
5302b0441da4SMatthew G. Knepley   PetscFunctionBegin;
5303b0441da4SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
53044f572ea9SToby Isaac   if (useCone) PetscAssertPointer(useCone, 2);
53054f572ea9SToby Isaac   if (useClosure) PetscAssertPointer(useClosure, 3);
53069566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
5307b0441da4SMatthew G. Knepley   if (!Nf) {
53089566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure));
5309b0441da4SMatthew G. Knepley   } else {
53109566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, 0, useCone, useClosure));
5311b0441da4SMatthew G. Knepley   }
53123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5313b0441da4SMatthew G. Knepley }
5314b0441da4SMatthew G. Knepley 
5315b0441da4SMatthew G. Knepley /*@
5316b0441da4SMatthew G. Knepley   DMSetBasicAdjacency - Set the flags for determining variable influence, using either the default or field 0 if it is defined
5317b0441da4SMatthew G. Knepley 
531820f4b53cSBarry Smith   Not Collective
5319b0441da4SMatthew G. Knepley 
5320b0441da4SMatthew G. Knepley   Input Parameters:
532120f4b53cSBarry Smith + dm         - The `DM` object
5322b0441da4SMatthew G. Knepley . useCone    - Flag for variable influence starting with the cone operation
5323b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
5324b0441da4SMatthew G. Knepley 
5325b0441da4SMatthew G. Knepley   Level: developer
5326b0441da4SMatthew G. Knepley 
532720f4b53cSBarry Smith   Notes:
532820f4b53cSBarry Smith .vb
532920f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
533020f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
533120f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
533220f4b53cSBarry Smith .ve
533320f4b53cSBarry Smith 
53341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetBasicAdjacency()`, `DMGetField()`, `DMSetField()`
5335b0441da4SMatthew G. Knepley @*/
5336d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetBasicAdjacency(DM dm, PetscBool useCone, PetscBool useClosure)
5337d71ae5a4SJacob Faibussowitsch {
5338b0441da4SMatthew G. Knepley   PetscInt Nf;
5339b0441da4SMatthew G. Knepley 
5340b0441da4SMatthew G. Knepley   PetscFunctionBegin;
5341b0441da4SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
53429566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
5343b0441da4SMatthew G. Knepley   if (!Nf) {
53449566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure));
5345b0441da4SMatthew G. Knepley   } else {
53469566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, 0, useCone, useClosure));
5347e5e52638SMatthew G. Knepley   }
53483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5349e5e52638SMatthew G. Knepley }
5350e5e52638SMatthew G. Knepley 
5351d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompleteBCLabels_Internal(DM dm)
5352d71ae5a4SJacob Faibussowitsch {
5353799db056SMatthew G. Knepley   DM           plex;
5354799db056SMatthew G. Knepley   DMLabel     *labels, *glabels;
5355799db056SMatthew G. Knepley   const char **names;
5356799db056SMatthew G. Knepley   char        *sendNames, *recvNames;
5357799db056SMatthew G. Knepley   PetscInt     Nds, s, maxLabels = 0, maxLen = 0, gmaxLen, Nl = 0, gNl, l, gl, m;
5358799db056SMatthew G. Knepley   size_t       len;
5359799db056SMatthew G. Knepley   MPI_Comm     comm;
5360799db056SMatthew G. Knepley   PetscMPIInt  rank, size, p, *counts, *displs;
5361783e2ec8SMatthew G. Knepley 
5362783e2ec8SMatthew G. Knepley   PetscFunctionBegin;
5363799db056SMatthew G. Knepley   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
5364799db056SMatthew G. Knepley   PetscCallMPI(MPI_Comm_size(comm, &size));
5365799db056SMatthew G. Knepley   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5366799db056SMatthew G. Knepley   PetscCall(DMGetNumDS(dm, &Nds));
5367799db056SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5368799db056SMatthew G. Knepley     PetscDS  dsBC;
5369799db056SMatthew G. Knepley     PetscInt numBd;
5370799db056SMatthew G. Knepley 
537107218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL));
5372799db056SMatthew G. Knepley     PetscCall(PetscDSGetNumBoundary(dsBC, &numBd));
5373799db056SMatthew G. Knepley     maxLabels += numBd;
5374799db056SMatthew G. Knepley   }
5375799db056SMatthew G. Knepley   PetscCall(PetscCalloc1(maxLabels, &labels));
5376799db056SMatthew G. Knepley   /* Get list of labels to be completed */
5377799db056SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5378799db056SMatthew G. Knepley     PetscDS  dsBC;
5379799db056SMatthew G. Knepley     PetscInt numBd, bd;
5380799db056SMatthew G. Knepley 
538107218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL));
5382799db056SMatthew G. Knepley     PetscCall(PetscDSGetNumBoundary(dsBC, &numBd));
5383799db056SMatthew G. Knepley     for (bd = 0; bd < numBd; ++bd) {
5384799db056SMatthew G. Knepley       DMLabel      label;
5385799db056SMatthew G. Knepley       PetscInt     field;
5386799db056SMatthew G. Knepley       PetscObject  obj;
5387799db056SMatthew G. Knepley       PetscClassId id;
5388799db056SMatthew G. Knepley 
5389799db056SMatthew G. Knepley       PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL));
53909566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, &obj));
53919566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
5392fa74d514SMatthew G. Knepley       if (id != PETSCFE_CLASSID || !label) continue;
53939371c9d4SSatish Balay       for (l = 0; l < Nl; ++l)
53949371c9d4SSatish Balay         if (labels[l] == label) break;
5395799db056SMatthew G. Knepley       if (l == Nl) labels[Nl++] = label;
5396783e2ec8SMatthew G. Knepley     }
5397799db056SMatthew G. Knepley   }
5398799db056SMatthew G. Knepley   /* Get label names */
5399799db056SMatthew G. Knepley   PetscCall(PetscMalloc1(Nl, &names));
5400799db056SMatthew G. Knepley   for (l = 0; l < Nl; ++l) PetscCall(PetscObjectGetName((PetscObject)labels[l], &names[l]));
54019371c9d4SSatish Balay   for (l = 0; l < Nl; ++l) {
54029371c9d4SSatish Balay     PetscCall(PetscStrlen(names[l], &len));
54039371c9d4SSatish Balay     maxLen = PetscMax(maxLen, (PetscInt)len + 2);
54049371c9d4SSatish Balay   }
5405799db056SMatthew G. Knepley   PetscCall(PetscFree(labels));
5406462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&maxLen, &gmaxLen, 1, MPIU_INT, MPI_MAX, comm));
5407799db056SMatthew G. Knepley   PetscCall(PetscCalloc1(Nl * gmaxLen, &sendNames));
5408c6a7a370SJeremy L Thompson   for (l = 0; l < Nl; ++l) PetscCall(PetscStrncpy(&sendNames[gmaxLen * l], names[l], gmaxLen));
5409799db056SMatthew G. Knepley   PetscCall(PetscFree(names));
5410799db056SMatthew G. Knepley   /* Put all names on all processes */
5411799db056SMatthew G. Knepley   PetscCall(PetscCalloc2(size, &counts, size + 1, &displs));
5412799db056SMatthew G. Knepley   PetscCallMPI(MPI_Allgather(&Nl, 1, MPI_INT, counts, 1, MPI_INT, comm));
5413799db056SMatthew G. Knepley   for (p = 0; p < size; ++p) displs[p + 1] = displs[p] + counts[p];
5414799db056SMatthew G. Knepley   gNl = displs[size];
54159371c9d4SSatish Balay   for (p = 0; p < size; ++p) {
54169371c9d4SSatish Balay     counts[p] *= gmaxLen;
54179371c9d4SSatish Balay     displs[p] *= gmaxLen;
54189371c9d4SSatish Balay   }
5419799db056SMatthew G. Knepley   PetscCall(PetscCalloc2(gNl * gmaxLen, &recvNames, gNl, &glabels));
5420799db056SMatthew G. Knepley   PetscCallMPI(MPI_Allgatherv(sendNames, counts[rank], MPI_CHAR, recvNames, counts, displs, MPI_CHAR, comm));
5421799db056SMatthew G. Knepley   PetscCall(PetscFree2(counts, displs));
5422799db056SMatthew G. Knepley   PetscCall(PetscFree(sendNames));
5423799db056SMatthew G. Knepley   for (l = 0, gl = 0; l < gNl; ++l) {
5424799db056SMatthew G. Knepley     PetscCall(DMGetLabel(dm, &recvNames[l * gmaxLen], &glabels[gl]));
5425799db056SMatthew G. Knepley     PetscCheck(glabels[gl], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Label %s missing on rank %d", &recvNames[l * gmaxLen], rank);
54269371c9d4SSatish Balay     for (m = 0; m < gl; ++m)
54275d6b2bfcSJames Wright       if (glabels[m] == glabels[gl]) goto next_label;
54289566063dSJacob Faibussowitsch     PetscCall(DMConvert(dm, DMPLEX, &plex));
5429799db056SMatthew G. Knepley     PetscCall(DMPlexLabelComplete(plex, glabels[gl]));
54309566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&plex));
5431799db056SMatthew G. Knepley     ++gl;
54325d6b2bfcSJames Wright   next_label:
54335d6b2bfcSJames Wright     continue;
5434783e2ec8SMatthew G. Knepley   }
5435799db056SMatthew G. Knepley   PetscCall(PetscFree2(recvNames, glabels));
54363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5437783e2ec8SMatthew G. Knepley }
5438783e2ec8SMatthew G. Knepley 
5439d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDSEnlarge_Static(DM dm, PetscInt NdsNew)
5440d71ae5a4SJacob Faibussowitsch {
5441e5e52638SMatthew G. Knepley   DMSpace *tmpd;
5442e5e52638SMatthew G. Knepley   PetscInt Nds = dm->Nds, s;
5443e5e52638SMatthew G. Knepley 
5444e5e52638SMatthew G. Knepley   PetscFunctionBegin;
54453ba16761SJacob Faibussowitsch   if (Nds >= NdsNew) PetscFunctionReturn(PETSC_SUCCESS);
54469566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(NdsNew, &tmpd));
5447e5e52638SMatthew G. Knepley   for (s = 0; s < Nds; ++s) tmpd[s] = dm->probs[s];
54489371c9d4SSatish Balay   for (s = Nds; s < NdsNew; ++s) {
54499371c9d4SSatish Balay     tmpd[s].ds     = NULL;
54509371c9d4SSatish Balay     tmpd[s].label  = NULL;
54519371c9d4SSatish Balay     tmpd[s].fields = NULL;
54529371c9d4SSatish Balay   }
54539566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->probs));
5454e5e52638SMatthew G. Knepley   dm->Nds   = NdsNew;
5455e5e52638SMatthew G. Knepley   dm->probs = tmpd;
54563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5457e5e52638SMatthew G. Knepley }
5458e5e52638SMatthew G. Knepley 
5459e5e52638SMatthew G. Knepley /*@
546020f4b53cSBarry Smith   DMGetNumDS - Get the number of discrete systems in the `DM`
5461e5e52638SMatthew G. Knepley 
546220f4b53cSBarry Smith   Not Collective
5463e5e52638SMatthew G. Knepley 
5464e5e52638SMatthew G. Knepley   Input Parameter:
546520f4b53cSBarry Smith . dm - The `DM`
5466e5e52638SMatthew G. Knepley 
5467e5e52638SMatthew G. Knepley   Output Parameter:
546820f4b53cSBarry Smith . Nds - The number of `PetscDS` objects
5469e5e52638SMatthew G. Knepley 
5470e5e52638SMatthew G. Knepley   Level: intermediate
5471e5e52638SMatthew G. Knepley 
54721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMGetCellDS()`
5473e5e52638SMatthew G. Knepley @*/
5474d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumDS(DM dm, PetscInt *Nds)
5475d71ae5a4SJacob Faibussowitsch {
5476e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5477e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
54784f572ea9SToby Isaac   PetscAssertPointer(Nds, 2);
5479e5e52638SMatthew G. Knepley   *Nds = dm->Nds;
54803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5481e5e52638SMatthew G. Knepley }
5482e5e52638SMatthew G. Knepley 
5483e5e52638SMatthew G. Knepley /*@
548420f4b53cSBarry Smith   DMClearDS - Remove all discrete systems from the `DM`
5485e5e52638SMatthew G. Knepley 
548620f4b53cSBarry Smith   Logically Collective
5487e5e52638SMatthew G. Knepley 
5488e5e52638SMatthew G. Knepley   Input Parameter:
548920f4b53cSBarry Smith . dm - The `DM`
5490e5e52638SMatthew G. Knepley 
5491e5e52638SMatthew G. Knepley   Level: intermediate
5492e5e52638SMatthew G. Knepley 
54931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumDS()`, `DMGetDS()`, `DMSetField()`
5494e5e52638SMatthew G. Knepley @*/
5495d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearDS(DM dm)
5496d71ae5a4SJacob Faibussowitsch {
5497e5e52638SMatthew G. Knepley   PetscInt s;
5498e5e52638SMatthew G. Knepley 
5499e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5500e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5501e5e52638SMatthew G. Knepley   for (s = 0; s < dm->Nds; ++s) {
55029566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dm->probs[s].ds));
550307218a29SMatthew G. Knepley     PetscCall(PetscDSDestroy(&dm->probs[s].dsIn));
55049566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&dm->probs[s].label));
55059566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&dm->probs[s].fields));
5506e5e52638SMatthew G. Knepley   }
55079566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->probs));
5508e5e52638SMatthew G. Knepley   dm->probs = NULL;
5509e5e52638SMatthew G. Knepley   dm->Nds   = 0;
55103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5511e5e52638SMatthew G. Knepley }
5512e5e52638SMatthew G. Knepley 
5513e5e52638SMatthew G. Knepley /*@
551420f4b53cSBarry Smith   DMGetDS - Get the default `PetscDS`
5515e5e52638SMatthew G. Knepley 
551620f4b53cSBarry Smith   Not Collective
5517e5e52638SMatthew G. Knepley 
5518e5e52638SMatthew G. Knepley   Input Parameter:
551920f4b53cSBarry Smith . dm - The `DM`
5520e5e52638SMatthew G. Knepley 
5521e5e52638SMatthew G. Knepley   Output Parameter:
552207218a29SMatthew G. Knepley . ds - The default `PetscDS`
5523e5e52638SMatthew G. Knepley 
5524e5e52638SMatthew G. Knepley   Level: intermediate
5525e5e52638SMatthew G. Knepley 
5526ce78bad3SBarry Smith   Note:
5527ce78bad3SBarry Smith   The `ds` is owned by the `dm` and should not be destroyed directly.
5528ce78bad3SBarry Smith 
55291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCellDS()`, `DMGetRegionDS()`
5530e5e52638SMatthew G. Knepley @*/
553107218a29SMatthew G. Knepley PetscErrorCode DMGetDS(DM dm, PetscDS *ds)
5532d71ae5a4SJacob Faibussowitsch {
5533e5e52638SMatthew G. Knepley   PetscFunctionBeginHot;
5534e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
55354f572ea9SToby Isaac   PetscAssertPointer(ds, 2);
553607218a29SMatthew G. Knepley   PetscCheck(dm->Nds > 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Need to call DMCreateDS() before calling DMGetDS()");
553707218a29SMatthew G. Knepley   *ds = dm->probs[0].ds;
55383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5539e5e52638SMatthew G. Knepley }
5540e5e52638SMatthew G. Knepley 
5541e5e52638SMatthew G. Knepley /*@
554220f4b53cSBarry Smith   DMGetCellDS - Get the `PetscDS` defined on a given cell
5543e5e52638SMatthew G. Knepley 
554420f4b53cSBarry Smith   Not Collective
5545e5e52638SMatthew G. Knepley 
5546e5e52638SMatthew G. Knepley   Input Parameters:
554720f4b53cSBarry Smith + dm    - The `DM`
554820f4b53cSBarry Smith - point - Cell for the `PetscDS`
5549e5e52638SMatthew G. Knepley 
555007218a29SMatthew G. Knepley   Output Parameters:
555107218a29SMatthew G. Knepley + ds   - The `PetscDS` defined on the given cell
555207218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or NULL if the same ds
5553e5e52638SMatthew G. Knepley 
5554e5e52638SMatthew G. Knepley   Level: developer
5555e5e52638SMatthew G. Knepley 
55561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMSetRegionDS()`
5557e5e52638SMatthew G. Knepley @*/
555807218a29SMatthew G. Knepley PetscErrorCode DMGetCellDS(DM dm, PetscInt point, PetscDS *ds, PetscDS *dsIn)
5559d71ae5a4SJacob Faibussowitsch {
556007218a29SMatthew G. Knepley   PetscDS  dsDef = NULL;
5561e5e52638SMatthew G. Knepley   PetscInt s;
5562e5e52638SMatthew G. Knepley 
5563e5e52638SMatthew G. Knepley   PetscFunctionBeginHot;
5564e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
55654f572ea9SToby Isaac   if (ds) PetscAssertPointer(ds, 3);
55664f572ea9SToby Isaac   if (dsIn) PetscAssertPointer(dsIn, 4);
556763a3b9bcSJacob Faibussowitsch   PetscCheck(point >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Mesh point cannot be negative: %" PetscInt_FMT, point);
556807218a29SMatthew G. Knepley   if (ds) *ds = NULL;
556907218a29SMatthew G. Knepley   if (dsIn) *dsIn = NULL;
5570e5e52638SMatthew G. Knepley   for (s = 0; s < dm->Nds; ++s) {
5571e5e52638SMatthew G. Knepley     PetscInt val;
5572e5e52638SMatthew G. Knepley 
55739371c9d4SSatish Balay     if (!dm->probs[s].label) {
557407218a29SMatthew G. Knepley       dsDef = dm->probs[s].ds;
55759371c9d4SSatish Balay     } else {
55769566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(dm->probs[s].label, point, &val));
55779371c9d4SSatish Balay       if (val >= 0) {
557807218a29SMatthew G. Knepley         if (ds) *ds = dm->probs[s].ds;
557907218a29SMatthew G. Knepley         if (dsIn) *dsIn = dm->probs[s].dsIn;
55809371c9d4SSatish Balay         break;
55819371c9d4SSatish Balay       }
5582e5e52638SMatthew G. Knepley     }
5583e5e52638SMatthew G. Knepley   }
558407218a29SMatthew G. Knepley   if (ds && !*ds) *ds = dsDef;
55853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5586e5e52638SMatthew G. Knepley }
5587e5e52638SMatthew G. Knepley 
5588e5e52638SMatthew G. Knepley /*@
558920f4b53cSBarry Smith   DMGetRegionDS - Get the `PetscDS` for a given mesh region, defined by a `DMLabel`
5590e5e52638SMatthew G. Knepley 
559120f4b53cSBarry Smith   Not Collective
5592e5e52638SMatthew G. Knepley 
5593e5e52638SMatthew G. Knepley   Input Parameters:
559420f4b53cSBarry Smith + dm    - The `DM`
559520f4b53cSBarry Smith - label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh
5596e5e52638SMatthew G. Knepley 
5597b3cf3223SMatthew G. Knepley   Output Parameters:
559820f4b53cSBarry Smith + fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL`
559907218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region, or `NULL`
560007218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input in the given region, or `NULL`
5601e5e52638SMatthew G. Knepley 
5602e5e52638SMatthew G. Knepley   Level: advanced
5603e5e52638SMatthew G. Knepley 
560420f4b53cSBarry Smith   Note:
560520f4b53cSBarry Smith   If a non-`NULL` label is given, but there is no `PetscDS` on that specific label,
560620f4b53cSBarry Smith   the `PetscDS` for the full domain (if present) is returned. Returns with
560707218a29SMatthew G. Knepley   fields = `NULL` and ds = `NULL` if there is no `PetscDS` for the full domain.
560820f4b53cSBarry Smith 
56091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5610e5e52638SMatthew G. Knepley @*/
561107218a29SMatthew G. Knepley PetscErrorCode DMGetRegionDS(DM dm, DMLabel label, IS *fields, PetscDS *ds, PetscDS *dsIn)
5612d71ae5a4SJacob Faibussowitsch {
5613e5e52638SMatthew G. Knepley   PetscInt Nds = dm->Nds, s;
5614e5e52638SMatthew G. Knepley 
5615e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5616e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5617e5e52638SMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
56189371c9d4SSatish Balay   if (fields) {
56194f572ea9SToby Isaac     PetscAssertPointer(fields, 3);
56209371c9d4SSatish Balay     *fields = NULL;
56219371c9d4SSatish Balay   }
56229371c9d4SSatish Balay   if (ds) {
56234f572ea9SToby Isaac     PetscAssertPointer(ds, 4);
56249371c9d4SSatish Balay     *ds = NULL;
56259371c9d4SSatish Balay   }
562607218a29SMatthew G. Knepley   if (dsIn) {
56274f572ea9SToby Isaac     PetscAssertPointer(dsIn, 5);
562807218a29SMatthew G. Knepley     *dsIn = NULL;
562907218a29SMatthew G. Knepley   }
5630e5e52638SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5631154ca461SJed Brown     if (dm->probs[s].label == label || !dm->probs[s].label) {
5632b3cf3223SMatthew G. Knepley       if (fields) *fields = dm->probs[s].fields;
5633b3cf3223SMatthew G. Knepley       if (ds) *ds = dm->probs[s].ds;
563407218a29SMatthew G. Knepley       if (dsIn) *dsIn = dm->probs[s].dsIn;
56353ba16761SJacob Faibussowitsch       if (dm->probs[s].label) PetscFunctionReturn(PETSC_SUCCESS);
5636b3cf3223SMatthew G. Knepley     }
5637e5e52638SMatthew G. Knepley   }
56383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5639e5e52638SMatthew G. Knepley }
5640e5e52638SMatthew G. Knepley 
5641e5e52638SMatthew G. Knepley /*@
5642bb7acecfSBarry Smith   DMSetRegionDS - Set the `PetscDS` for a given mesh region, defined by a `DMLabel`
5643083401c6SMatthew G. Knepley 
564420f4b53cSBarry Smith   Collective
5645083401c6SMatthew G. Knepley 
5646083401c6SMatthew G. Knepley   Input Parameters:
5647bb7acecfSBarry Smith + dm     - The `DM`
564820f4b53cSBarry Smith . label  - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh
564907218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` for all fields
565007218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region
565107218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS`
5652083401c6SMatthew G. Knepley 
565320f4b53cSBarry Smith   Level: advanced
565420f4b53cSBarry Smith 
5655bb7acecfSBarry Smith   Note:
5656bb7acecfSBarry Smith   If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`. If the `PetscDS` is replaced,
5657083401c6SMatthew G. Knepley   the fields argument is ignored.
5658083401c6SMatthew G. Knepley 
56591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionNumDS()`, `DMGetDS()`, `DMGetCellDS()`
5660083401c6SMatthew G. Knepley @*/
566107218a29SMatthew G. Knepley PetscErrorCode DMSetRegionDS(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn)
5662d71ae5a4SJacob Faibussowitsch {
5663083401c6SMatthew G. Knepley   PetscInt Nds = dm->Nds, s;
5664083401c6SMatthew G. Knepley 
5665083401c6SMatthew G. Knepley   PetscFunctionBegin;
5666083401c6SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5667083401c6SMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
566807218a29SMatthew G. Knepley   if (fields) PetscValidHeaderSpecific(fields, IS_CLASSID, 3);
5669064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 4);
567007218a29SMatthew G. Knepley   if (dsIn) PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 5);
5671083401c6SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5672083401c6SMatthew G. Knepley     if (dm->probs[s].label == label) {
56739566063dSJacob Faibussowitsch       PetscCall(PetscDSDestroy(&dm->probs[s].ds));
567407218a29SMatthew G. Knepley       PetscCall(PetscDSDestroy(&dm->probs[s].dsIn));
5675083401c6SMatthew G. Knepley       dm->probs[s].ds   = ds;
567607218a29SMatthew G. Knepley       dm->probs[s].dsIn = dsIn;
56773ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
5678083401c6SMatthew G. Knepley     }
5679083401c6SMatthew G. Knepley   }
56809566063dSJacob Faibussowitsch   PetscCall(DMDSEnlarge_Static(dm, Nds + 1));
56819566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
56829566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)fields));
56839566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)ds));
568407218a29SMatthew G. Knepley   PetscCall(PetscObjectReference((PetscObject)dsIn));
5685083401c6SMatthew G. Knepley   if (!label) {
5686083401c6SMatthew G. Knepley     /* Put the NULL label at the front, so it is returned as the default */
5687083401c6SMatthew G. Knepley     for (s = Nds - 1; s >= 0; --s) dm->probs[s + 1] = dm->probs[s];
5688083401c6SMatthew G. Knepley     Nds = 0;
5689083401c6SMatthew G. Knepley   }
5690083401c6SMatthew G. Knepley   dm->probs[Nds].label  = label;
5691083401c6SMatthew G. Knepley   dm->probs[Nds].fields = fields;
5692083401c6SMatthew G. Knepley   dm->probs[Nds].ds     = ds;
569307218a29SMatthew G. Knepley   dm->probs[Nds].dsIn   = dsIn;
56943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5695083401c6SMatthew G. Knepley }
5696083401c6SMatthew G. Knepley 
5697083401c6SMatthew G. Knepley /*@
569820f4b53cSBarry Smith   DMGetRegionNumDS - Get the `PetscDS` for a given mesh region, defined by the region number
5699e5e52638SMatthew G. Knepley 
570020f4b53cSBarry Smith   Not Collective
5701e5e52638SMatthew G. Knepley 
5702e5e52638SMatthew G. Knepley   Input Parameters:
570320f4b53cSBarry Smith + dm  - The `DM`
5704e5e52638SMatthew G. Knepley - num - The region number, in [0, Nds)
5705e5e52638SMatthew G. Knepley 
5706e5e52638SMatthew G. Knepley   Output Parameters:
570720f4b53cSBarry Smith + label  - The region label, or `NULL`
570820f4b53cSBarry Smith . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL`
570907218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region, or `NULL`
571007218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input in the given region, or `NULL`
5711e5e52638SMatthew G. Knepley 
5712e5e52638SMatthew G. Knepley   Level: advanced
5713e5e52638SMatthew G. Knepley 
57141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5715e5e52638SMatthew G. Knepley @*/
571607218a29SMatthew G. Knepley PetscErrorCode DMGetRegionNumDS(DM dm, PetscInt num, DMLabel *label, IS *fields, PetscDS *ds, PetscDS *dsIn)
5717d71ae5a4SJacob Faibussowitsch {
5718e5e52638SMatthew G. Knepley   PetscInt Nds;
5719e5e52638SMatthew G. Knepley 
5720e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5721e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
57229566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
572363a3b9bcSJacob Faibussowitsch   PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds);
5724e5e52638SMatthew G. Knepley   if (label) {
57254f572ea9SToby Isaac     PetscAssertPointer(label, 3);
5726e5e52638SMatthew G. Knepley     *label = dm->probs[num].label;
5727e5e52638SMatthew G. Knepley   }
5728b3cf3223SMatthew G. Knepley   if (fields) {
57294f572ea9SToby Isaac     PetscAssertPointer(fields, 4);
5730b3cf3223SMatthew G. Knepley     *fields = dm->probs[num].fields;
5731b3cf3223SMatthew G. Knepley   }
5732e5e52638SMatthew G. Knepley   if (ds) {
57334f572ea9SToby Isaac     PetscAssertPointer(ds, 5);
5734e5e52638SMatthew G. Knepley     *ds = dm->probs[num].ds;
5735e5e52638SMatthew G. Knepley   }
573607218a29SMatthew G. Knepley   if (dsIn) {
57374f572ea9SToby Isaac     PetscAssertPointer(dsIn, 6);
573807218a29SMatthew G. Knepley     *dsIn = dm->probs[num].dsIn;
573907218a29SMatthew G. Knepley   }
57403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5741e5e52638SMatthew G. Knepley }
5742e5e52638SMatthew G. Knepley 
5743e5e52638SMatthew G. Knepley /*@
574420f4b53cSBarry Smith   DMSetRegionNumDS - Set the `PetscDS` for a given mesh region, defined by the region number
5745e5e52638SMatthew G. Knepley 
574620f4b53cSBarry Smith   Not Collective
5747e5e52638SMatthew G. Knepley 
5748e5e52638SMatthew G. Knepley   Input Parameters:
574920f4b53cSBarry Smith + dm     - The `DM`
5750083401c6SMatthew G. Knepley . num    - The region number, in [0, Nds)
575120f4b53cSBarry Smith . label  - The region label, or `NULL`
575207218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` to prevent setting
575307218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region, or `NULL` to prevent setting
575407218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS`
5755e5e52638SMatthew G. Knepley 
5756e5e52638SMatthew G. Knepley   Level: advanced
5757e5e52638SMatthew G. Knepley 
57581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5759e5e52638SMatthew G. Knepley @*/
576007218a29SMatthew G. Knepley PetscErrorCode DMSetRegionNumDS(DM dm, PetscInt num, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn)
5761d71ae5a4SJacob Faibussowitsch {
5762083401c6SMatthew G. Knepley   PetscInt Nds;
5763e5e52638SMatthew G. Knepley 
5764e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5765e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5766ad540459SPierre Jolivet   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3);
57679566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
576863a3b9bcSJacob Faibussowitsch   PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds);
57699566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
57709566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&dm->probs[num].label));
5771083401c6SMatthew G. Knepley   dm->probs[num].label = label;
5772083401c6SMatthew G. Knepley   if (fields) {
5773083401c6SMatthew G. Knepley     PetscValidHeaderSpecific(fields, IS_CLASSID, 4);
57749566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)fields));
57759566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&dm->probs[num].fields));
5776083401c6SMatthew G. Knepley     dm->probs[num].fields = fields;
5777e5e52638SMatthew G. Knepley   }
5778083401c6SMatthew G. Knepley   if (ds) {
5779083401c6SMatthew G. Knepley     PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 5);
57809566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)ds));
57819566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dm->probs[num].ds));
5782083401c6SMatthew G. Knepley     dm->probs[num].ds = ds;
5783083401c6SMatthew G. Knepley   }
578407218a29SMatthew G. Knepley   if (dsIn) {
578507218a29SMatthew G. Knepley     PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 6);
578607218a29SMatthew G. Knepley     PetscCall(PetscObjectReference((PetscObject)dsIn));
578707218a29SMatthew G. Knepley     PetscCall(PetscDSDestroy(&dm->probs[num].dsIn));
578807218a29SMatthew G. Knepley     dm->probs[num].dsIn = dsIn;
578907218a29SMatthew G. Knepley   }
57903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5791e5e52638SMatthew G. Knepley }
5792e5e52638SMatthew G. Knepley 
5793e5e52638SMatthew G. Knepley /*@
579420f4b53cSBarry Smith   DMFindRegionNum - Find the region number for a given `PetscDS`, or -1 if it is not found.
57951d3af9e0SMatthew G. Knepley 
579620f4b53cSBarry Smith   Not Collective
57971d3af9e0SMatthew G. Knepley 
57981d3af9e0SMatthew G. Knepley   Input Parameters:
579920f4b53cSBarry Smith + dm - The `DM`
580020f4b53cSBarry Smith - ds - The `PetscDS` defined on the given region
58011d3af9e0SMatthew G. Knepley 
58021d3af9e0SMatthew G. Knepley   Output Parameter:
58031d3af9e0SMatthew G. Knepley . num - The region number, in [0, Nds), or -1 if not found
58041d3af9e0SMatthew G. Knepley 
58051d3af9e0SMatthew G. Knepley   Level: advanced
58061d3af9e0SMatthew G. Knepley 
58071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
58081d3af9e0SMatthew G. Knepley @*/
5809d71ae5a4SJacob Faibussowitsch PetscErrorCode DMFindRegionNum(DM dm, PetscDS ds, PetscInt *num)
5810d71ae5a4SJacob Faibussowitsch {
58111d3af9e0SMatthew G. Knepley   PetscInt Nds, n;
58121d3af9e0SMatthew G. Knepley 
58131d3af9e0SMatthew G. Knepley   PetscFunctionBegin;
58141d3af9e0SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
58151d3af9e0SMatthew G. Knepley   PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 2);
58164f572ea9SToby Isaac   PetscAssertPointer(num, 3);
58179566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
58189371c9d4SSatish Balay   for (n = 0; n < Nds; ++n)
58199371c9d4SSatish Balay     if (ds == dm->probs[n].ds) break;
58201d3af9e0SMatthew G. Knepley   if (n >= Nds) *num = -1;
58211d3af9e0SMatthew G. Knepley   else *num = n;
58223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
58231d3af9e0SMatthew G. Knepley }
58241d3af9e0SMatthew G. Knepley 
5825cc4c1da9SBarry Smith /*@
5826bb7acecfSBarry Smith   DMCreateFEDefault - Create a `PetscFE` based on the celltype for the mesh
58272df84da0SMatthew G. Knepley 
582820f4b53cSBarry Smith   Not Collective
58292df84da0SMatthew G. Knepley 
5830f1a722f8SMatthew G. Knepley   Input Parameters:
5831bb7acecfSBarry Smith + dm     - The `DM`
58322df84da0SMatthew G. Knepley . Nc     - The number of components for the field
583320f4b53cSBarry Smith . prefix - The options prefix for the output `PetscFE`, or `NULL`
5834bb7acecfSBarry Smith - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree
58352df84da0SMatthew G. Knepley 
58362df84da0SMatthew G. Knepley   Output Parameter:
5837bb7acecfSBarry Smith . fem - The `PetscFE`
58382df84da0SMatthew G. Knepley 
583920f4b53cSBarry Smith   Level: intermediate
584020f4b53cSBarry Smith 
5841bb7acecfSBarry Smith   Note:
5842bb7acecfSBarry Smith   This is a convenience method that just calls `PetscFECreateByCell()` underneath.
58432df84da0SMatthew G. Knepley 
58441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscFECreateByCell()`, `DMAddField()`, `DMCreateDS()`, `DMGetCellDS()`, `DMGetRegionDS()`
58452df84da0SMatthew G. Knepley @*/
5846d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFEDefault(DM dm, PetscInt Nc, const char prefix[], PetscInt qorder, PetscFE *fem)
5847d71ae5a4SJacob Faibussowitsch {
58482df84da0SMatthew G. Knepley   DMPolytopeType ct;
58492df84da0SMatthew G. Knepley   PetscInt       dim, cStart;
58502df84da0SMatthew G. Knepley 
58512df84da0SMatthew G. Knepley   PetscFunctionBegin;
58522df84da0SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
58532df84da0SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, Nc, 2);
58544f572ea9SToby Isaac   if (prefix) PetscAssertPointer(prefix, 3);
58552df84da0SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, qorder, 4);
58564f572ea9SToby Isaac   PetscAssertPointer(fem, 5);
58579566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
58589566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL));
58599566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCellType(dm, cStart, &ct));
58609566063dSJacob Faibussowitsch   PetscCall(PetscFECreateByCell(PETSC_COMM_SELF, dim, Nc, ct, prefix, qorder, fem));
58613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
58622df84da0SMatthew G. Knepley }
58632df84da0SMatthew G. Knepley 
58641d3af9e0SMatthew G. Knepley /*@
5865bb7acecfSBarry Smith   DMCreateDS - Create the discrete systems for the `DM` based upon the fields added to the `DM`
5866e5e52638SMatthew G. Knepley 
586720f4b53cSBarry Smith   Collective
5868e5e52638SMatthew G. Knepley 
5869e5e52638SMatthew G. Knepley   Input Parameter:
5870bb7acecfSBarry Smith . dm - The `DM`
5871e5e52638SMatthew G. Knepley 
587220f4b53cSBarry Smith   Options Database Key:
5873bb7acecfSBarry Smith . -dm_petscds_view - View all the `PetscDS` objects in this `DM`
587445480ffeSMatthew G. Knepley 
587520f4b53cSBarry Smith   Level: intermediate
587620f4b53cSBarry Smith 
5877ce78bad3SBarry Smith   Developer Note:
5878ce78bad3SBarry Smith   The name of this function is wrong. Create functions always return the created object as one of the arguments.
5879ce78bad3SBarry Smith 
58801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetField`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`
5881e5e52638SMatthew G. Knepley @*/
5882d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDS(DM dm)
5883d71ae5a4SJacob Faibussowitsch {
5884e5e52638SMatthew G. Knepley   MPI_Comm  comm;
5885083401c6SMatthew G. Knepley   PetscDS   dsDef;
5886083401c6SMatthew G. Knepley   DMLabel  *labelSet;
5887f9244615SMatthew G. Knepley   PetscInt  dE, Nf = dm->Nf, f, s, Nl, l, Ndef, k;
5888f9244615SMatthew G. Knepley   PetscBool doSetup = PETSC_TRUE, flg;
5889e5e52638SMatthew G. Knepley 
5890e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5891e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
58923ba16761SJacob Faibussowitsch   if (!dm->fields) PetscFunctionReturn(PETSC_SUCCESS);
58939566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
58949566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dE));
5895083401c6SMatthew G. Knepley   /* Determine how many regions we have */
58969566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Nf, &labelSet));
5897083401c6SMatthew G. Knepley   Nl   = 0;
5898083401c6SMatthew G. Knepley   Ndef = 0;
5899083401c6SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
5900083401c6SMatthew G. Knepley     DMLabel  label = dm->fields[f].label;
5901083401c6SMatthew G. Knepley     PetscInt l;
5902083401c6SMatthew G. Knepley 
5903f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED
5904f918ec44SMatthew G. Knepley     /* Move CEED context to discretizations */
5905f918ec44SMatthew G. Knepley     {
5906f918ec44SMatthew G. Knepley       PetscClassId id;
5907f918ec44SMatthew G. Knepley 
59089566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(dm->fields[f].disc, &id));
5909f918ec44SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
5910f918ec44SMatthew G. Knepley         Ceed ceed;
5911f918ec44SMatthew G. Knepley 
59129566063dSJacob Faibussowitsch         PetscCall(DMGetCeed(dm, &ceed));
59139566063dSJacob Faibussowitsch         PetscCall(PetscFESetCeed((PetscFE)dm->fields[f].disc, ceed));
5914f918ec44SMatthew G. Knepley       }
5915f918ec44SMatthew G. Knepley     }
5916f918ec44SMatthew G. Knepley #endif
59179371c9d4SSatish Balay     if (!label) {
59189371c9d4SSatish Balay       ++Ndef;
59199371c9d4SSatish Balay       continue;
59209371c9d4SSatish Balay     }
59219371c9d4SSatish Balay     for (l = 0; l < Nl; ++l)
59229371c9d4SSatish Balay       if (label == labelSet[l]) break;
5923083401c6SMatthew G. Knepley     if (l < Nl) continue;
5924083401c6SMatthew G. Knepley     labelSet[Nl++] = label;
5925083401c6SMatthew G. Knepley   }
5926083401c6SMatthew G. Knepley   /* Create default DS if there are no labels to intersect with */
592707218a29SMatthew G. Knepley   PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL));
5928083401c6SMatthew G. Knepley   if (!dsDef && Ndef && !Nl) {
5929b3cf3223SMatthew G. Knepley     IS        fields;
5930b3cf3223SMatthew G. Knepley     PetscInt *fld, nf;
5931b3cf3223SMatthew G. Knepley 
59329371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
59339371c9d4SSatish Balay       if (!dm->fields[f].label) ++nf;
59347a8be351SBarry Smith     PetscCheck(nf, comm, PETSC_ERR_PLIB, "All fields have labels, but we are trying to create a default DS");
59359566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nf, &fld));
59369371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
59379371c9d4SSatish Balay       if (!dm->fields[f].label) fld[nf++] = f;
59389566063dSJacob Faibussowitsch     PetscCall(ISCreate(PETSC_COMM_SELF, &fields));
59399566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_"));
59409566063dSJacob Faibussowitsch     PetscCall(ISSetType(fields, ISGENERAL));
59419566063dSJacob Faibussowitsch     PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER));
594288f0c812SMatthew G. Knepley 
59439566063dSJacob Faibussowitsch     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef));
594407218a29SMatthew G. Knepley     PetscCall(DMSetRegionDS(dm, NULL, fields, dsDef, NULL));
59459566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dsDef));
59469566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&fields));
59472df9ee95SMatthew G. Knepley   }
594807218a29SMatthew G. Knepley   PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL));
59499566063dSJacob Faibussowitsch   if (dsDef) PetscCall(PetscDSSetCoordinateDimension(dsDef, dE));
5950083401c6SMatthew G. Knepley   /* Intersect labels with default fields */
5951083401c6SMatthew G. Knepley   if (Ndef && Nl) {
59520122748bSMatthew G. Knepley     DM              plex;
5953083401c6SMatthew G. Knepley     DMLabel         cellLabel;
5954083401c6SMatthew G. Knepley     IS              fieldIS, allcellIS, defcellIS = NULL;
5955083401c6SMatthew G. Knepley     PetscInt       *fields;
5956083401c6SMatthew G. Knepley     const PetscInt *cells;
5957083401c6SMatthew G. Knepley     PetscInt        depth, nf = 0, n, c;
59580122748bSMatthew G. Knepley 
59599566063dSJacob Faibussowitsch     PetscCall(DMConvert(dm, DMPLEX, &plex));
59609566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepth(plex, &depth));
59619566063dSJacob Faibussowitsch     PetscCall(DMGetStratumIS(plex, "dim", depth, &allcellIS));
59629566063dSJacob Faibussowitsch     if (!allcellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &allcellIS));
59635fedec97SMatthew G. Knepley     /* TODO This looks like it only works for one label */
5964083401c6SMatthew G. Knepley     for (l = 0; l < Nl; ++l) {
5965083401c6SMatthew G. Knepley       DMLabel label = labelSet[l];
5966083401c6SMatthew G. Knepley       IS      pointIS;
5967083401c6SMatthew G. Knepley 
59689566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&defcellIS));
59699566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(label, 1, &pointIS));
59709566063dSJacob Faibussowitsch       PetscCall(ISDifference(allcellIS, pointIS, &defcellIS));
59719566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
5972083401c6SMatthew G. Knepley     }
59739566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&allcellIS));
5974083401c6SMatthew G. Knepley 
59759566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, "defaultCells", &cellLabel));
59769566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(defcellIS, &n));
59779566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(defcellIS, &cells));
59789566063dSJacob Faibussowitsch     for (c = 0; c < n; ++c) PetscCall(DMLabelSetValue(cellLabel, cells[c], 1));
59799566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(defcellIS, &cells));
59809566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&defcellIS));
59819566063dSJacob Faibussowitsch     PetscCall(DMPlexLabelComplete(plex, cellLabel));
5982083401c6SMatthew G. Knepley 
59839566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Ndef, &fields));
59849371c9d4SSatish Balay     for (f = 0; f < Nf; ++f)
59859371c9d4SSatish Balay       if (!dm->fields[f].label) fields[nf++] = f;
59869566063dSJacob Faibussowitsch     PetscCall(ISCreate(PETSC_COMM_SELF, &fieldIS));
59879566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fieldIS, "dm_fields_"));
59889566063dSJacob Faibussowitsch     PetscCall(ISSetType(fieldIS, ISGENERAL));
59899566063dSJacob Faibussowitsch     PetscCall(ISGeneralSetIndices(fieldIS, nf, fields, PETSC_OWN_POINTER));
5990083401c6SMatthew G. Knepley 
59919566063dSJacob Faibussowitsch     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef));
599207218a29SMatthew G. Knepley     PetscCall(DMSetRegionDS(dm, cellLabel, fieldIS, dsDef, NULL));
59939566063dSJacob Faibussowitsch     PetscCall(PetscDSSetCoordinateDimension(dsDef, dE));
59949566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&cellLabel));
59959566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dsDef));
59969566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&fieldIS));
59979566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&plex));
5998083401c6SMatthew G. Knepley   }
5999083401c6SMatthew G. Knepley   /* Create label DSes
6000083401c6SMatthew G. Knepley      - WE ONLY SUPPORT IDENTICAL OR DISJOINT LABELS
6001083401c6SMatthew G. Knepley   */
6002083401c6SMatthew G. Knepley   /* TODO Should check that labels are disjoint */
6003083401c6SMatthew G. Knepley   for (l = 0; l < Nl; ++l) {
6004083401c6SMatthew G. Knepley     DMLabel   label = labelSet[l];
600507218a29SMatthew G. Knepley     PetscDS   ds, dsIn = NULL;
6006083401c6SMatthew G. Knepley     IS        fields;
6007083401c6SMatthew G. Knepley     PetscInt *fld, nf;
6008083401c6SMatthew G. Knepley 
60099566063dSJacob Faibussowitsch     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds));
60109371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
60119371c9d4SSatish Balay       if (label == dm->fields[f].label || !dm->fields[f].label) ++nf;
60129566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nf, &fld));
60139371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
60149371c9d4SSatish Balay       if (label == dm->fields[f].label || !dm->fields[f].label) fld[nf++] = f;
60159566063dSJacob Faibussowitsch     PetscCall(ISCreate(PETSC_COMM_SELF, &fields));
60169566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_"));
60179566063dSJacob Faibussowitsch     PetscCall(ISSetType(fields, ISGENERAL));
60189566063dSJacob Faibussowitsch     PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER));
60199566063dSJacob Faibussowitsch     PetscCall(PetscDSSetCoordinateDimension(ds, dE));
6020083401c6SMatthew G. Knepley     {
6021083401c6SMatthew G. Knepley       DMPolytopeType ct;
6022083401c6SMatthew G. Knepley       PetscInt       lStart, lEnd;
60235fedec97SMatthew G. Knepley       PetscBool      isCohesiveLocal = PETSC_FALSE, isCohesive;
60240122748bSMatthew G. Knepley 
60259566063dSJacob Faibussowitsch       PetscCall(DMLabelGetBounds(label, &lStart, &lEnd));
6026665f567fSMatthew G. Knepley       if (lStart >= 0) {
60279566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCellType(dm, lStart, &ct));
6028412e9a14SMatthew G. Knepley         switch (ct) {
6029412e9a14SMatthew G. Knepley         case DM_POLYTOPE_POINT_PRISM_TENSOR:
6030412e9a14SMatthew G. Knepley         case DM_POLYTOPE_SEG_PRISM_TENSOR:
6031412e9a14SMatthew G. Knepley         case DM_POLYTOPE_TRI_PRISM_TENSOR:
6032d71ae5a4SJacob Faibussowitsch         case DM_POLYTOPE_QUAD_PRISM_TENSOR:
6033d71ae5a4SJacob Faibussowitsch           isCohesiveLocal = PETSC_TRUE;
6034d71ae5a4SJacob Faibussowitsch           break;
6035d71ae5a4SJacob Faibussowitsch         default:
6036d71ae5a4SJacob Faibussowitsch           break;
6037412e9a14SMatthew G. Knepley         }
6038665f567fSMatthew G. Knepley       }
6039462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&isCohesiveLocal, &isCohesive, 1, MPIU_BOOL, MPI_LOR, comm));
604007218a29SMatthew G. Knepley       if (isCohesive) {
604107218a29SMatthew G. Knepley         PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsIn));
604207218a29SMatthew G. Knepley         PetscCall(PetscDSSetCoordinateDimension(dsIn, dE));
604307218a29SMatthew G. Knepley       }
60445fedec97SMatthew G. Knepley       for (f = 0, nf = 0; f < Nf; ++f) {
60455fedec97SMatthew G. Knepley         if (label == dm->fields[f].label || !dm->fields[f].label) {
60465fedec97SMatthew G. Knepley           if (label == dm->fields[f].label) {
60479566063dSJacob Faibussowitsch             PetscCall(PetscDSSetDiscretization(ds, nf, NULL));
60489566063dSJacob Faibussowitsch             PetscCall(PetscDSSetCohesive(ds, nf, isCohesive));
604907218a29SMatthew G. Knepley             if (dsIn) {
605007218a29SMatthew G. Knepley               PetscCall(PetscDSSetDiscretization(dsIn, nf, NULL));
605107218a29SMatthew G. Knepley               PetscCall(PetscDSSetCohesive(dsIn, nf, isCohesive));
605207218a29SMatthew G. Knepley             }
60535fedec97SMatthew G. Knepley           }
60545fedec97SMatthew G. Knepley           ++nf;
60555fedec97SMatthew G. Knepley         }
60565fedec97SMatthew G. Knepley       }
6057e5e52638SMatthew G. Knepley     }
605807218a29SMatthew G. Knepley     PetscCall(DMSetRegionDS(dm, label, fields, ds, dsIn));
605907218a29SMatthew G. Knepley     PetscCall(ISDestroy(&fields));
60609566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&ds));
606107218a29SMatthew G. Knepley     PetscCall(PetscDSDestroy(&dsIn));
6062e5e52638SMatthew G. Knepley   }
60639566063dSJacob Faibussowitsch   PetscCall(PetscFree(labelSet));
6064e5e52638SMatthew G. Knepley   /* Set fields in DSes */
6065083401c6SMatthew G. Knepley   for (s = 0; s < dm->Nds; ++s) {
6066083401c6SMatthew G. Knepley     PetscDS         ds     = dm->probs[s].ds;
606707218a29SMatthew G. Knepley     PetscDS         dsIn   = dm->probs[s].dsIn;
6068083401c6SMatthew G. Knepley     IS              fields = dm->probs[s].fields;
6069083401c6SMatthew G. Knepley     const PetscInt *fld;
60705fedec97SMatthew G. Knepley     PetscInt        nf, dsnf;
60715fedec97SMatthew G. Knepley     PetscBool       isCohesive;
6072e5e52638SMatthew G. Knepley 
60739566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsnf));
60749566063dSJacob Faibussowitsch     PetscCall(PetscDSIsCohesive(ds, &isCohesive));
60759566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(fields, &nf));
60769566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(fields, &fld));
6077083401c6SMatthew G. Knepley     for (f = 0; f < nf; ++f) {
6078083401c6SMatthew G. Knepley       PetscObject  disc = dm->fields[fld[f]].disc;
60795fedec97SMatthew G. Knepley       PetscBool    isCohesiveField;
6080e5e52638SMatthew G. Knepley       PetscClassId id;
6081e5e52638SMatthew G. Knepley 
60825fedec97SMatthew G. Knepley       /* Handle DS with no fields */
60839566063dSJacob Faibussowitsch       if (dsnf) PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField));
60845fedec97SMatthew G. Knepley       /* If this is a cohesive cell, then regular fields need the lower dimensional discretization */
608507218a29SMatthew G. Knepley       if (isCohesive) {
608607218a29SMatthew G. Knepley         if (!isCohesiveField) {
608707218a29SMatthew G. Knepley           PetscObject bdDisc;
608807218a29SMatthew G. Knepley 
608907218a29SMatthew G. Knepley           PetscCall(PetscFEGetHeightSubspace((PetscFE)disc, 1, (PetscFE *)&bdDisc));
609007218a29SMatthew G. Knepley           PetscCall(PetscDSSetDiscretization(ds, f, bdDisc));
609107218a29SMatthew G. Knepley           PetscCall(PetscDSSetDiscretization(dsIn, f, disc));
609207218a29SMatthew G. Knepley         } else {
60939566063dSJacob Faibussowitsch           PetscCall(PetscDSSetDiscretization(ds, f, disc));
609407218a29SMatthew G. Knepley           PetscCall(PetscDSSetDiscretization(dsIn, f, disc));
609507218a29SMatthew G. Knepley         }
609607218a29SMatthew G. Knepley       } else {
609707218a29SMatthew G. Knepley         PetscCall(PetscDSSetDiscretization(ds, f, disc));
609807218a29SMatthew G. Knepley       }
6099083401c6SMatthew G. Knepley       /* We allow people to have placeholder fields and construct the Section by hand */
61009566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(disc, &id));
6101e5e52638SMatthew G. Knepley       if ((id != PETSCFE_CLASSID) && (id != PETSCFV_CLASSID)) doSetup = PETSC_FALSE;
6102e5e52638SMatthew G. Knepley     }
61039566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(fields, &fld));
6104e5e52638SMatthew G. Knepley   }
6105f9244615SMatthew G. Knepley   /* Allow k-jet tabulation */
61069566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)dm)->prefix, "-dm_ds_jet_degree", &k, &flg));
6107f9244615SMatthew G. Knepley   if (flg) {
61083b4aee56SMatthew G. Knepley     for (s = 0; s < dm->Nds; ++s) {
61093b4aee56SMatthew G. Knepley       PetscDS  ds   = dm->probs[s].ds;
611007218a29SMatthew G. Knepley       PetscDS  dsIn = dm->probs[s].dsIn;
61113b4aee56SMatthew G. Knepley       PetscInt Nf, f;
61123b4aee56SMatthew G. Knepley 
61139566063dSJacob Faibussowitsch       PetscCall(PetscDSGetNumFields(ds, &Nf));
611407218a29SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
611507218a29SMatthew G. Knepley         PetscCall(PetscDSSetJetDegree(ds, f, k));
611607218a29SMatthew G. Knepley         if (dsIn) PetscCall(PetscDSSetJetDegree(dsIn, f, k));
611707218a29SMatthew G. Knepley       }
61183b4aee56SMatthew G. Knepley     }
6119f9244615SMatthew G. Knepley   }
6120e5e52638SMatthew G. Knepley   /* Setup DSes */
6121e5e52638SMatthew G. Knepley   if (doSetup) {
612207218a29SMatthew G. Knepley     for (s = 0; s < dm->Nds; ++s) {
6123cf1363e4SMatthew G. Knepley       if (dm->setfromoptionscalled) {
6124cf1363e4SMatthew G. Knepley         PetscCall(PetscDSSetFromOptions(dm->probs[s].ds));
6125cf1363e4SMatthew G. Knepley         if (dm->probs[s].dsIn) PetscCall(PetscDSSetFromOptions(dm->probs[s].dsIn));
6126cf1363e4SMatthew G. Knepley       }
612707218a29SMatthew G. Knepley       PetscCall(PetscDSSetUp(dm->probs[s].ds));
612807218a29SMatthew G. Knepley       if (dm->probs[s].dsIn) PetscCall(PetscDSSetUp(dm->probs[s].dsIn));
612907218a29SMatthew G. Knepley     }
6130e5e52638SMatthew G. Knepley   }
61313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6132e5e52638SMatthew G. Knepley }
6133e5e52638SMatthew G. Knepley 
6134e5e52638SMatthew G. Knepley /*@
6135d2b2dc1eSMatthew G. Knepley   DMUseTensorOrder - Use a tensor product closure ordering for the default section
6136d2b2dc1eSMatthew G. Knepley 
6137d2b2dc1eSMatthew G. Knepley   Input Parameters:
6138d2b2dc1eSMatthew G. Knepley + dm     - The DM
6139d2b2dc1eSMatthew G. Knepley - tensor - Flag for tensor order
6140d2b2dc1eSMatthew G. Knepley 
6141d2b2dc1eSMatthew G. Knepley   Level: developer
6142d2b2dc1eSMatthew G. Knepley 
6143d2b2dc1eSMatthew G. Knepley .seealso: `DMPlexSetClosurePermutationTensor()`, `PetscSectionResetClosurePermutation()`
6144d2b2dc1eSMatthew G. Knepley @*/
6145d2b2dc1eSMatthew G. Knepley PetscErrorCode DMUseTensorOrder(DM dm, PetscBool tensor)
6146d2b2dc1eSMatthew G. Knepley {
6147d2b2dc1eSMatthew G. Knepley   PetscInt  Nf;
6148d2b2dc1eSMatthew G. Knepley   PetscBool reorder = PETSC_TRUE, isPlex;
6149d2b2dc1eSMatthew G. Knepley 
6150d2b2dc1eSMatthew G. Knepley   PetscFunctionBegin;
6151d2b2dc1eSMatthew G. Knepley   PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex));
6152d2b2dc1eSMatthew G. Knepley   PetscCall(DMGetNumFields(dm, &Nf));
6153d2b2dc1eSMatthew G. Knepley   for (PetscInt f = 0; f < Nf; ++f) {
6154d2b2dc1eSMatthew G. Knepley     PetscObject  obj;
6155d2b2dc1eSMatthew G. Knepley     PetscClassId id;
6156d2b2dc1eSMatthew G. Knepley 
6157d2b2dc1eSMatthew G. Knepley     PetscCall(DMGetField(dm, f, NULL, &obj));
6158d2b2dc1eSMatthew G. Knepley     PetscCall(PetscObjectGetClassId(obj, &id));
6159d2b2dc1eSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
6160d2b2dc1eSMatthew G. Knepley       PetscSpace sp;
6161d2b2dc1eSMatthew G. Knepley       PetscBool  tensor;
6162d2b2dc1eSMatthew G. Knepley 
6163d2b2dc1eSMatthew G. Knepley       PetscCall(PetscFEGetBasisSpace((PetscFE)obj, &sp));
6164d2b2dc1eSMatthew G. Knepley       PetscCall(PetscSpacePolynomialGetTensor(sp, &tensor));
6165d2b2dc1eSMatthew G. Knepley       reorder = reorder && tensor ? PETSC_TRUE : PETSC_FALSE;
6166d2b2dc1eSMatthew G. Knepley     } else reorder = PETSC_FALSE;
6167d2b2dc1eSMatthew G. Knepley   }
6168d2b2dc1eSMatthew G. Knepley   if (tensor) {
6169d2b2dc1eSMatthew G. Knepley     if (reorder && isPlex) PetscCall(DMPlexSetClosurePermutationTensor(dm, PETSC_DETERMINE, NULL));
6170d2b2dc1eSMatthew G. Knepley   } else {
6171d2b2dc1eSMatthew G. Knepley     PetscSection s;
6172d2b2dc1eSMatthew G. Knepley 
6173d2b2dc1eSMatthew G. Knepley     PetscCall(DMGetLocalSection(dm, &s));
6174d2b2dc1eSMatthew G. Knepley     if (s) PetscCall(PetscSectionResetClosurePermutation(s));
6175d2b2dc1eSMatthew G. Knepley   }
6176d2b2dc1eSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
6177d2b2dc1eSMatthew G. Knepley }
6178d2b2dc1eSMatthew G. Knepley 
6179d2b2dc1eSMatthew G. Knepley /*@
6180bb7acecfSBarry Smith   DMComputeExactSolution - Compute the exact solution for a given `DM`, using the `PetscDS` information.
61817f96f943SMatthew G. Knepley 
618220f4b53cSBarry Smith   Collective
6183f2cacb80SMatthew G. Knepley 
61847f96f943SMatthew G. Knepley   Input Parameters:
6185bb7acecfSBarry Smith + dm   - The `DM`
61867f96f943SMatthew G. Knepley - time - The time
61877f96f943SMatthew G. Knepley 
61887f96f943SMatthew G. Knepley   Output Parameters:
618920f4b53cSBarry Smith + u   - The vector will be filled with exact solution values, or `NULL`
619020f4b53cSBarry Smith - u_t - The vector will be filled with the time derivative of exact solution values, or `NULL`
619120f4b53cSBarry Smith 
619220f4b53cSBarry Smith   Level: developer
61937f96f943SMatthew G. Knepley 
6194bb7acecfSBarry Smith   Note:
6195bb7acecfSBarry Smith   The user must call `PetscDSSetExactSolution()` before using this routine
61967f96f943SMatthew G. Knepley 
61971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscDSSetExactSolution()`
61987f96f943SMatthew G. Knepley @*/
6199d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeExactSolution(DM dm, PetscReal time, Vec u, Vec u_t)
6200d71ae5a4SJacob Faibussowitsch {
62017f96f943SMatthew G. Knepley   PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx);
62027f96f943SMatthew G. Knepley   void   **ectxs;
6203f60fa741SMatthew G. Knepley   Vec      locu, locu_t;
62047f96f943SMatthew G. Knepley   PetscInt Nf, Nds, s;
62057f96f943SMatthew G. Knepley 
62067f96f943SMatthew G. Knepley   PetscFunctionBegin;
6207f2cacb80SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6208f60fa741SMatthew G. Knepley   if (u) {
6209f60fa741SMatthew G. Knepley     PetscValidHeaderSpecific(u, VEC_CLASSID, 3);
6210f60fa741SMatthew G. Knepley     PetscCall(DMGetLocalVector(dm, &locu));
6211f60fa741SMatthew G. Knepley     PetscCall(VecSet(locu, 0.));
6212f60fa741SMatthew G. Knepley   }
6213f60fa741SMatthew G. Knepley   if (u_t) {
6214f60fa741SMatthew G. Knepley     PetscValidHeaderSpecific(u_t, VEC_CLASSID, 4);
6215f60fa741SMatthew G. Knepley     PetscCall(DMGetLocalVector(dm, &locu_t));
6216f60fa741SMatthew G. Knepley     PetscCall(VecSet(locu_t, 0.));
6217f60fa741SMatthew G. Knepley   }
62189566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
62199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(Nf, &exacts, Nf, &ectxs));
62209566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
62217f96f943SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
62227f96f943SMatthew G. Knepley     PetscDS         ds;
62237f96f943SMatthew G. Knepley     DMLabel         label;
62247f96f943SMatthew G. Knepley     IS              fieldIS;
62257f96f943SMatthew G. Knepley     const PetscInt *fields, id = 1;
62267f96f943SMatthew G. Knepley     PetscInt        dsNf, f;
62277f96f943SMatthew G. Knepley 
622807218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL));
62299566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsNf));
62309566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(fieldIS, &fields));
62319566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(exacts, Nf));
62329566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ectxs, Nf));
6233f2cacb80SMatthew G. Knepley     if (u) {
6234f60fa741SMatthew G. Knepley       for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolution(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]]));
6235f60fa741SMatthew G. Knepley       if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu));
6236f60fa741SMatthew G. Knepley       else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu));
62377f96f943SMatthew G. Knepley     }
6238f2cacb80SMatthew G. Knepley     if (u_t) {
62399566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(exacts, Nf));
62409566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(ectxs, Nf));
6241f60fa741SMatthew G. Knepley       for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolutionTimeDerivative(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]]));
6242f60fa741SMatthew G. Knepley       if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu_t));
6243f60fa741SMatthew G. Knepley       else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu_t));
6244f2cacb80SMatthew G. Knepley     }
62459566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(fieldIS, &fields));
6246f2cacb80SMatthew G. Knepley   }
6247f2cacb80SMatthew G. Knepley   if (u) {
62489566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution"));
62499566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u, "exact_"));
6250f2cacb80SMatthew G. Knepley   }
6251f2cacb80SMatthew G. Knepley   if (u_t) {
62529566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution Time Derivative"));
62539566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u_t, "exact_t_"));
6254f2cacb80SMatthew G. Knepley   }
62559566063dSJacob Faibussowitsch   PetscCall(PetscFree2(exacts, ectxs));
6256f60fa741SMatthew G. Knepley   if (u) {
6257f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalBegin(dm, locu, INSERT_ALL_VALUES, u));
6258f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalEnd(dm, locu, INSERT_ALL_VALUES, u));
6259f60fa741SMatthew G. Knepley     PetscCall(DMRestoreLocalVector(dm, &locu));
6260f60fa741SMatthew G. Knepley   }
6261f60fa741SMatthew G. Knepley   if (u_t) {
6262f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalBegin(dm, locu_t, INSERT_ALL_VALUES, u_t));
6263f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalEnd(dm, locu_t, INSERT_ALL_VALUES, u_t));
6264f60fa741SMatthew G. Knepley     PetscCall(DMRestoreLocalVector(dm, &locu_t));
6265f60fa741SMatthew G. Knepley   }
62663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
62677f96f943SMatthew G. Knepley }
62687f96f943SMatthew G. Knepley 
6269bb4b53efSMatthew G. Knepley static PetscErrorCode DMTransferDS_Internal(DM dm, DMLabel label, IS fields, PetscInt minDegree, PetscInt maxDegree, PetscDS ds, PetscDS dsIn)
6270d71ae5a4SJacob Faibussowitsch {
627107218a29SMatthew G. Knepley   PetscDS dsNew, dsInNew = NULL;
627245480ffeSMatthew G. Knepley 
627345480ffeSMatthew G. Knepley   PetscFunctionBegin;
62749566063dSJacob Faibussowitsch   PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)ds), &dsNew));
6275bb4b53efSMatthew G. Knepley   PetscCall(PetscDSCopy(ds, minDegree, maxDegree, dm, dsNew));
627607218a29SMatthew G. Knepley   if (dsIn) {
627707218a29SMatthew G. Knepley     PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)dsIn), &dsInNew));
6278bb4b53efSMatthew G. Knepley     PetscCall(PetscDSCopy(dsIn, minDegree, maxDegree, dm, dsInNew));
627945480ffeSMatthew G. Knepley   }
628007218a29SMatthew G. Knepley   PetscCall(DMSetRegionDS(dm, label, fields, dsNew, dsInNew));
62819566063dSJacob Faibussowitsch   PetscCall(PetscDSDestroy(&dsNew));
628207218a29SMatthew G. Knepley   PetscCall(PetscDSDestroy(&dsInNew));
62833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
628445480ffeSMatthew G. Knepley }
628545480ffeSMatthew G. Knepley 
62867f96f943SMatthew G. Knepley /*@
6287bb7acecfSBarry Smith   DMCopyDS - Copy the discrete systems for the `DM` into another `DM`
6288e5e52638SMatthew G. Knepley 
628920f4b53cSBarry Smith   Collective
6290e5e52638SMatthew G. Knepley 
6291bb4b53efSMatthew G. Knepley   Input Parameters:
6292bb4b53efSMatthew G. Knepley + dm        - The `DM`
6293bb4b53efSMatthew G. Knepley . minDegree - Minimum degree for a discretization, or `PETSC_DETERMINE` for no limit
6294bb4b53efSMatthew G. Knepley - maxDegree - Maximum degree for a discretization, or `PETSC_DETERMINE` for no limit
6295e5e52638SMatthew G. Knepley 
6296e5e52638SMatthew G. Knepley   Output Parameter:
6297bb7acecfSBarry Smith . newdm - The `DM`
6298e5e52638SMatthew G. Knepley 
6299e5e52638SMatthew G. Knepley   Level: advanced
6300e5e52638SMatthew G. Knepley 
63011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`
6302e5e52638SMatthew G. Knepley @*/
6303bb4b53efSMatthew G. Knepley PetscErrorCode DMCopyDS(DM dm, PetscInt minDegree, PetscInt maxDegree, DM newdm)
6304d71ae5a4SJacob Faibussowitsch {
6305e5e52638SMatthew G. Knepley   PetscInt Nds, s;
6306e5e52638SMatthew G. Knepley 
6307e5e52638SMatthew G. Knepley   PetscFunctionBegin;
63083ba16761SJacob Faibussowitsch   if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS);
63099566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
63109566063dSJacob Faibussowitsch   PetscCall(DMClearDS(newdm));
6311e5e52638SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
6312e5e52638SMatthew G. Knepley     DMLabel  label;
6313b3cf3223SMatthew G. Knepley     IS       fields;
631407218a29SMatthew G. Knepley     PetscDS  ds, dsIn, newds;
6315783e2ec8SMatthew G. Knepley     PetscInt Nbd, bd;
6316e5e52638SMatthew G. Knepley 
631707218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fields, &ds, &dsIn));
6318b8025e53SMatthew G. Knepley     /* TODO: We need to change all keys from labels in the old DM to labels in the new DM */
6319bb4b53efSMatthew G. Knepley     PetscCall(DMTransferDS_Internal(newdm, label, fields, minDegree, maxDegree, ds, dsIn));
6320d5b43468SJose E. Roman     /* Complete new labels in the new DS */
632107218a29SMatthew G. Knepley     PetscCall(DMGetRegionDS(newdm, label, NULL, &newds, NULL));
63229566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumBoundary(newds, &Nbd));
6323783e2ec8SMatthew G. Knepley     for (bd = 0; bd < Nbd; ++bd) {
6324b8025e53SMatthew G. Knepley       PetscWeakForm wf;
632545480ffeSMatthew G. Knepley       DMLabel       label;
6326783e2ec8SMatthew G. Knepley       PetscInt      field;
6327783e2ec8SMatthew G. Knepley 
63289566063dSJacob Faibussowitsch       PetscCall(PetscDSGetBoundary(newds, bd, &wf, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL));
63299566063dSJacob Faibussowitsch       PetscCall(PetscWeakFormReplaceLabel(wf, label));
6330783e2ec8SMatthew G. Knepley     }
6331e5e52638SMatthew G. Knepley   }
6332799db056SMatthew G. Knepley   PetscCall(DMCompleteBCLabels_Internal(newdm));
63333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6334e5e52638SMatthew G. Knepley }
6335e5e52638SMatthew G. Knepley 
6336e5e52638SMatthew G. Knepley /*@
6337bb7acecfSBarry Smith   DMCopyDisc - Copy the fields and discrete systems for the `DM` into another `DM`
6338e5e52638SMatthew G. Knepley 
633920f4b53cSBarry Smith   Collective
6340e5e52638SMatthew G. Knepley 
6341e5e52638SMatthew G. Knepley   Input Parameter:
6342bb7acecfSBarry Smith . dm - The `DM`
6343e5e52638SMatthew G. Knepley 
6344e5e52638SMatthew G. Knepley   Output Parameter:
6345bb7acecfSBarry Smith . newdm - The `DM`
6346e5e52638SMatthew G. Knepley 
6347e5e52638SMatthew G. Knepley   Level: advanced
6348e5e52638SMatthew G. Knepley 
634973ff1848SBarry Smith   Developer Note:
6350bb7acecfSBarry Smith   Really ugly name, nothing in PETSc is called a `Disc` plus it is an ugly abbreviation
6351bb7acecfSBarry Smith 
63521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMCopyDS()`
6353e5e52638SMatthew G. Knepley @*/
6354d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDisc(DM dm, DM newdm)
6355d71ae5a4SJacob Faibussowitsch {
6356e5e52638SMatthew G. Knepley   PetscFunctionBegin;
6357bb4b53efSMatthew G. Knepley   PetscCall(DMCopyFields(dm, PETSC_DETERMINE, PETSC_DETERMINE, newdm));
6358bb4b53efSMatthew G. Knepley   PetscCall(DMCopyDS(dm, PETSC_DETERMINE, PETSC_DETERMINE, newdm));
63593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6360e5e52638SMatthew G. Knepley }
6361e5e52638SMatthew G. Knepley 
6362c73cfb54SMatthew G. Knepley /*@
6363bb7acecfSBarry Smith   DMGetDimension - Return the topological dimension of the `DM`
6364c73cfb54SMatthew G. Knepley 
636520f4b53cSBarry Smith   Not Collective
6366c73cfb54SMatthew G. Knepley 
6367c73cfb54SMatthew G. Knepley   Input Parameter:
6368bb7acecfSBarry Smith . dm - The `DM`
6369c73cfb54SMatthew G. Knepley 
6370c73cfb54SMatthew G. Knepley   Output Parameter:
6371c73cfb54SMatthew G. Knepley . dim - The topological dimension
6372c73cfb54SMatthew G. Knepley 
6373c73cfb54SMatthew G. Knepley   Level: beginner
6374c73cfb54SMatthew G. Knepley 
63751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDimension()`, `DMCreate()`
6376c73cfb54SMatthew G. Knepley @*/
6377d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimension(DM dm, PetscInt *dim)
6378d71ae5a4SJacob Faibussowitsch {
6379c73cfb54SMatthew G. Knepley   PetscFunctionBegin;
6380c73cfb54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
63814f572ea9SToby Isaac   PetscAssertPointer(dim, 2);
6382c73cfb54SMatthew G. Knepley   *dim = dm->dim;
63833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6384c73cfb54SMatthew G. Knepley }
6385c73cfb54SMatthew G. Knepley 
6386c73cfb54SMatthew G. Knepley /*@
6387bb7acecfSBarry Smith   DMSetDimension - Set the topological dimension of the `DM`
6388c73cfb54SMatthew G. Knepley 
638920f4b53cSBarry Smith   Collective
6390c73cfb54SMatthew G. Knepley 
6391c73cfb54SMatthew G. Knepley   Input Parameters:
6392bb7acecfSBarry Smith + dm  - The `DM`
6393c73cfb54SMatthew G. Knepley - dim - The topological dimension
6394c73cfb54SMatthew G. Knepley 
6395c73cfb54SMatthew G. Knepley   Level: beginner
6396c73cfb54SMatthew G. Knepley 
63971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDimension()`, `DMCreate()`
6398c73cfb54SMatthew G. Knepley @*/
6399d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDimension(DM dm, PetscInt dim)
6400d71ae5a4SJacob Faibussowitsch {
6401e5e52638SMatthew G. Knepley   PetscDS  ds;
640245480ffeSMatthew G. Knepley   PetscInt Nds, n;
6403f17e8794SMatthew G. Knepley 
6404c73cfb54SMatthew G. Knepley   PetscFunctionBegin;
6405c73cfb54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6406c73cfb54SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, dim, 2);
6407c73cfb54SMatthew G. Knepley   dm->dim = dim;
6408d17bd122SMatthew G. Knepley   if (dm->dim >= 0) {
64099566063dSJacob Faibussowitsch     PetscCall(DMGetNumDS(dm, &Nds));
641045480ffeSMatthew G. Knepley     for (n = 0; n < Nds; ++n) {
641107218a29SMatthew G. Knepley       PetscCall(DMGetRegionNumDS(dm, n, NULL, NULL, &ds, NULL));
64129566063dSJacob Faibussowitsch       if (ds->dimEmbed < 0) PetscCall(PetscDSSetCoordinateDimension(ds, dim));
641345480ffeSMatthew G. Knepley     }
6414d17bd122SMatthew G. Knepley   }
64153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6416c73cfb54SMatthew G. Knepley }
6417c73cfb54SMatthew G. Knepley 
6418793f3fe5SMatthew G. Knepley /*@
6419793f3fe5SMatthew G. Knepley   DMGetDimPoints - Get the half-open interval for all points of a given dimension
6420793f3fe5SMatthew G. Knepley 
642120f4b53cSBarry Smith   Collective
6422793f3fe5SMatthew G. Knepley 
6423793f3fe5SMatthew G. Knepley   Input Parameters:
6424bb7acecfSBarry Smith + dm  - the `DM`
6425793f3fe5SMatthew G. Knepley - dim - the dimension
6426793f3fe5SMatthew G. Knepley 
6427793f3fe5SMatthew G. Knepley   Output Parameters:
6428793f3fe5SMatthew G. Knepley + pStart - The first point of the given dimension
6429aa049354SPatrick Sanan - pEnd   - The first point following points of the given dimension
6430793f3fe5SMatthew G. Knepley 
643120f4b53cSBarry Smith   Level: intermediate
643220f4b53cSBarry Smith 
6433793f3fe5SMatthew G. Knepley   Note:
6434793f3fe5SMatthew G. Knepley   The points are vertices in the Hasse diagram encoding the topology. This is explained in
6435a8d69d7bSBarry Smith   https://arxiv.org/abs/0908.4427. If no points exist of this dimension in the storage scheme,
6436793f3fe5SMatthew G. Knepley   then the interval is empty.
6437793f3fe5SMatthew G. Knepley 
64381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPLEX`, `DMPlexGetDepthStratum()`, `DMPlexGetHeightStratum()`
6439793f3fe5SMatthew G. Knepley @*/
6440d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimPoints(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd)
6441d71ae5a4SJacob Faibussowitsch {
6442793f3fe5SMatthew G. Knepley   PetscInt d;
6443793f3fe5SMatthew G. Knepley 
6444793f3fe5SMatthew G. Knepley   PetscFunctionBegin;
6445793f3fe5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
64469566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &d));
64477a8be351SBarry Smith   PetscCheck((dim >= 0) && (dim <= d), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %" PetscInt_FMT, dim);
6448dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, getdimpoints, dim, pStart, pEnd);
64493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6450793f3fe5SMatthew G. Knepley }
6451793f3fe5SMatthew G. Knepley 
64526636e97aSMatthew G Knepley /*@
6453bb7acecfSBarry Smith   DMGetOutputDM - Retrieve the `DM` associated with the layout for output
6454f4d763aaSMatthew G. Knepley 
645520f4b53cSBarry Smith   Collective
64568f700142SStefano Zampini 
6457f4d763aaSMatthew G. Knepley   Input Parameter:
6458bb7acecfSBarry Smith . dm - The original `DM`
6459f4d763aaSMatthew G. Knepley 
6460f4d763aaSMatthew G. Knepley   Output Parameter:
6461bb7acecfSBarry Smith . odm - The `DM` which provides the layout for output
6462f4d763aaSMatthew G. Knepley 
6463f4d763aaSMatthew G. Knepley   Level: intermediate
6464f4d763aaSMatthew G. Knepley 
6465bb7acecfSBarry Smith   Note:
6466bb7acecfSBarry Smith   In some situations the vector obtained with `DMCreateGlobalVector()` excludes points for degrees of freedom that are associated with fixed (Dirichelet) boundary
6467bb7acecfSBarry Smith   conditions since the algebraic solver does not solve for those variables. The output `DM` includes these excluded points and its global vector contains the
6468bb7acecfSBarry Smith   locations for those dof so that they can be output to a file or other viewer along with the unconstrained dof.
6469bb7acecfSBarry Smith 
64701cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`, `DMGetGlobalSection()`, `DMCreateGlobalVector()`, `PetscSectionHasConstraints()`, `DMSetGlobalSection()`
6471f4d763aaSMatthew G. Knepley @*/
6472d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputDM(DM dm, DM *odm)
6473d71ae5a4SJacob Faibussowitsch {
6474c26acbdeSMatthew G. Knepley   PetscSection section;
6475eb9d3e4dSMatthew G. Knepley   IS           perm;
6476eb9d3e4dSMatthew G. Knepley   PetscBool    hasConstraints, newDM, gnewDM;
647792a26154SJames Wright   PetscInt     num_face_sfs = 0;
647814f150ffSMatthew G. Knepley 
647914f150ffSMatthew G. Knepley   PetscFunctionBegin;
648014f150ffSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
64814f572ea9SToby Isaac   PetscAssertPointer(odm, 2);
64829566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
64839566063dSJacob Faibussowitsch   PetscCall(PetscSectionHasConstraints(section, &hasConstraints));
6484eb9d3e4dSMatthew G. Knepley   PetscCall(PetscSectionGetPermutation(section, &perm));
648592a26154SJames Wright   PetscCall(DMPlexGetIsoperiodicFaceSF(dm, &num_face_sfs, NULL));
648692a26154SJames Wright   newDM = hasConstraints || perm || (num_face_sfs > 0) ? PETSC_TRUE : PETSC_FALSE;
6487462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&newDM, &gnewDM, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm)));
6488eb9d3e4dSMatthew G. Knepley   if (!gnewDM) {
6489c26acbdeSMatthew G. Knepley     *odm = dm;
64903ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
6491c26acbdeSMatthew G. Knepley   }
649214f150ffSMatthew G. Knepley   if (!dm->dmBC) {
6493c26acbdeSMatthew G. Knepley     PetscSection newSection, gsection;
649492a26154SJames Wright     PetscSF      sf, sfNatural;
6495eb9d3e4dSMatthew G. Knepley     PetscBool    usePerm = dm->ignorePermOutput ? PETSC_FALSE : PETSC_TRUE;
649614f150ffSMatthew G. Knepley 
64979566063dSJacob Faibussowitsch     PetscCall(DMClone(dm, &dm->dmBC));
64989566063dSJacob Faibussowitsch     PetscCall(DMCopyDisc(dm, dm->dmBC));
64999566063dSJacob Faibussowitsch     PetscCall(PetscSectionClone(section, &newSection));
65009566063dSJacob Faibussowitsch     PetscCall(DMSetLocalSection(dm->dmBC, newSection));
65019566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&newSection));
650292a26154SJames Wright     PetscCall(DMGetNaturalSF(dm, &sfNatural));
650392a26154SJames Wright     PetscCall(DMSetNaturalSF(dm->dmBC, sfNatural));
65049566063dSJacob Faibussowitsch     PetscCall(DMGetPointSF(dm->dmBC, &sf));
6505eb9d3e4dSMatthew G. Knepley     PetscCall(PetscSectionCreateGlobalSection(section, sf, usePerm, PETSC_TRUE, PETSC_FALSE, &gsection));
65069566063dSJacob Faibussowitsch     PetscCall(DMSetGlobalSection(dm->dmBC, gsection));
65079566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&gsection));
650814f150ffSMatthew G. Knepley   }
650914f150ffSMatthew G. Knepley   *odm = dm->dmBC;
65103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
651114f150ffSMatthew G. Knepley }
6512f4d763aaSMatthew G. Knepley 
6513f4d763aaSMatthew G. Knepley /*@
6514cdb7a50dSMatthew G. Knepley   DMGetOutputSequenceNumber - Retrieve the sequence number/value for output
6515f4d763aaSMatthew G. Knepley 
6516f4d763aaSMatthew G. Knepley   Input Parameter:
6517bb7acecfSBarry Smith . dm - The original `DM`
6518f4d763aaSMatthew G. Knepley 
6519cdb7a50dSMatthew G. Knepley   Output Parameters:
6520cdb7a50dSMatthew G. Knepley + num - The output sequence number
6521cdb7a50dSMatthew G. Knepley - val - The output sequence value
6522f4d763aaSMatthew G. Knepley 
6523f4d763aaSMatthew G. Knepley   Level: intermediate
6524f4d763aaSMatthew G. Knepley 
6525bb7acecfSBarry Smith   Note:
6526bb7acecfSBarry Smith   This is intended for output that should appear in sequence, for instance
6527bb7acecfSBarry Smith   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6528bb7acecfSBarry Smith 
652973ff1848SBarry Smith   Developer Note:
6530bb7acecfSBarry Smith   The `DM` serves as a convenient place to store the current iteration value. The iteration is not
6531bb7acecfSBarry Smith   not directly related to the `DM`.
6532f4d763aaSMatthew G. Knepley 
65331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`
6534f4d763aaSMatthew G. Knepley @*/
6535d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputSequenceNumber(DM dm, PetscInt *num, PetscReal *val)
6536d71ae5a4SJacob Faibussowitsch {
6537f4d763aaSMatthew G. Knepley   PetscFunctionBegin;
6538f4d763aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
65399371c9d4SSatish Balay   if (num) {
65404f572ea9SToby Isaac     PetscAssertPointer(num, 2);
65419371c9d4SSatish Balay     *num = dm->outputSequenceNum;
65429371c9d4SSatish Balay   }
65439371c9d4SSatish Balay   if (val) {
65444f572ea9SToby Isaac     PetscAssertPointer(val, 3);
65459371c9d4SSatish Balay     *val = dm->outputSequenceVal;
65469371c9d4SSatish Balay   }
65473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6548f4d763aaSMatthew G. Knepley }
6549f4d763aaSMatthew G. Knepley 
6550f4d763aaSMatthew G. Knepley /*@
6551cdb7a50dSMatthew G. Knepley   DMSetOutputSequenceNumber - Set the sequence number/value for output
6552f4d763aaSMatthew G. Knepley 
6553f4d763aaSMatthew G. Knepley   Input Parameters:
6554bb7acecfSBarry Smith + dm  - The original `DM`
6555cdb7a50dSMatthew G. Knepley . num - The output sequence number
6556cdb7a50dSMatthew G. Knepley - val - The output sequence value
6557f4d763aaSMatthew G. Knepley 
6558f4d763aaSMatthew G. Knepley   Level: intermediate
6559f4d763aaSMatthew G. Knepley 
6560bb7acecfSBarry Smith   Note:
6561bb7acecfSBarry Smith   This is intended for output that should appear in sequence, for instance
6562bb7acecfSBarry Smith   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6563f4d763aaSMatthew G. Knepley 
65641cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`
6565f4d763aaSMatthew G. Knepley @*/
6566d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOutputSequenceNumber(DM dm, PetscInt num, PetscReal val)
6567d71ae5a4SJacob Faibussowitsch {
6568f4d763aaSMatthew G. Knepley   PetscFunctionBegin;
6569f4d763aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6570f4d763aaSMatthew G. Knepley   dm->outputSequenceNum = num;
6571cdb7a50dSMatthew G. Knepley   dm->outputSequenceVal = val;
65723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6573cdb7a50dSMatthew G. Knepley }
6574cdb7a50dSMatthew G. Knepley 
65755d83a8b1SBarry Smith /*@
6576bb7acecfSBarry Smith   DMOutputSequenceLoad - Retrieve the sequence value from a `PetscViewer`
6577cdb7a50dSMatthew G. Knepley 
6578cdb7a50dSMatthew G. Knepley   Input Parameters:
6579bb7acecfSBarry Smith + dm     - The original `DM`
6580b2033f5dSMatthew G. Knepley . viewer - The `PetscViewer` to get it from
6581cdb7a50dSMatthew G. Knepley . name   - The sequence name
6582cdb7a50dSMatthew G. Knepley - num    - The output sequence number
6583cdb7a50dSMatthew G. Knepley 
6584cdb7a50dSMatthew G. Knepley   Output Parameter:
6585cdb7a50dSMatthew G. Knepley . val - The output sequence value
6586cdb7a50dSMatthew G. Knepley 
6587cdb7a50dSMatthew G. Knepley   Level: intermediate
6588cdb7a50dSMatthew G. Knepley 
6589bb7acecfSBarry Smith   Note:
6590bb7acecfSBarry Smith   This is intended for output that should appear in sequence, for instance
6591bb7acecfSBarry Smith   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6592bb7acecfSBarry Smith 
659373ff1848SBarry Smith   Developer Note:
6594bb7acecfSBarry Smith   It is unclear at the user API level why a `DM` is needed as input
6595cdb7a50dSMatthew G. Knepley 
65961cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()`
6597cdb7a50dSMatthew G. Knepley @*/
6598b2033f5dSMatthew G. Knepley PetscErrorCode DMOutputSequenceLoad(DM dm, PetscViewer viewer, const char name[], PetscInt num, PetscReal *val)
6599d71ae5a4SJacob Faibussowitsch {
6600cdb7a50dSMatthew G. Knepley   PetscBool ishdf5;
6601cdb7a50dSMatthew G. Knepley 
6602cdb7a50dSMatthew G. Knepley   PetscFunctionBegin;
6603cdb7a50dSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6604cdb7a50dSMatthew G. Knepley   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
6605b2033f5dSMatthew G. Knepley   PetscAssertPointer(name, 3);
66064f572ea9SToby Isaac   PetscAssertPointer(val, 5);
66079566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
6608cdb7a50dSMatthew G. Knepley   if (ishdf5) {
6609cdb7a50dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5)
6610cdb7a50dSMatthew G. Knepley     PetscScalar value;
6611cdb7a50dSMatthew G. Knepley 
66129566063dSJacob Faibussowitsch     PetscCall(DMSequenceLoad_HDF5_Internal(dm, name, num, &value, viewer));
66134aeb217fSMatthew G. Knepley     *val = PetscRealPart(value);
6614cdb7a50dSMatthew G. Knepley #endif
6615cdb7a50dSMatthew G. Knepley   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()");
66163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6617f4d763aaSMatthew G. Knepley }
66188e4ac7eaSMatthew G. Knepley 
66198e4ac7eaSMatthew G. Knepley /*@
6620b2033f5dSMatthew G. Knepley   DMGetOutputSequenceLength - Retrieve the number of sequence values from a `PetscViewer`
6621b2033f5dSMatthew G. Knepley 
6622b2033f5dSMatthew G. Knepley   Input Parameters:
6623b2033f5dSMatthew G. Knepley + dm     - The original `DM`
6624b2033f5dSMatthew G. Knepley . viewer - The `PetscViewer` to get it from
6625b2033f5dSMatthew G. Knepley - name   - The sequence name
6626b2033f5dSMatthew G. Knepley 
6627b2033f5dSMatthew G. Knepley   Output Parameter:
6628b2033f5dSMatthew G. Knepley . len - The length of the output sequence
6629b2033f5dSMatthew G. Knepley 
6630b2033f5dSMatthew G. Knepley   Level: intermediate
6631b2033f5dSMatthew G. Knepley 
6632b2033f5dSMatthew G. Knepley   Note:
6633b2033f5dSMatthew G. Knepley   This is intended for output that should appear in sequence, for instance
6634b2033f5dSMatthew G. Knepley   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6635b2033f5dSMatthew G. Knepley 
6636b2033f5dSMatthew G. Knepley   Developer Note:
6637b2033f5dSMatthew G. Knepley   It is unclear at the user API level why a `DM` is needed as input
6638b2033f5dSMatthew G. Knepley 
6639b2033f5dSMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()`
6640b2033f5dSMatthew G. Knepley @*/
6641b2033f5dSMatthew G. Knepley PetscErrorCode DMGetOutputSequenceLength(DM dm, PetscViewer viewer, const char name[], PetscInt *len)
6642b2033f5dSMatthew G. Knepley {
6643b2033f5dSMatthew G. Knepley   PetscBool ishdf5;
6644b2033f5dSMatthew G. Knepley 
6645b2033f5dSMatthew G. Knepley   PetscFunctionBegin;
6646b2033f5dSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6647b2033f5dSMatthew G. Knepley   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
6648b2033f5dSMatthew G. Knepley   PetscAssertPointer(name, 3);
6649b2033f5dSMatthew G. Knepley   PetscAssertPointer(len, 4);
6650b2033f5dSMatthew G. Knepley   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
6651b2033f5dSMatthew G. Knepley   if (ishdf5) {
6652b2033f5dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5)
6653b2033f5dSMatthew G. Knepley     PetscCall(DMSequenceGetLength_HDF5_Internal(dm, name, len, viewer));
6654b2033f5dSMatthew G. Knepley #endif
6655b2033f5dSMatthew G. Knepley   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()");
6656b2033f5dSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
6657b2033f5dSMatthew G. Knepley }
6658b2033f5dSMatthew G. Knepley 
6659b2033f5dSMatthew G. Knepley /*@
6660bb7acecfSBarry Smith   DMGetUseNatural - Get the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel
66618e4ac7eaSMatthew G. Knepley 
666220f4b53cSBarry Smith   Not Collective
66638e4ac7eaSMatthew G. Knepley 
66648e4ac7eaSMatthew G. Knepley   Input Parameter:
6665bb7acecfSBarry Smith . dm - The `DM`
66668e4ac7eaSMatthew G. Knepley 
66678e4ac7eaSMatthew G. Knepley   Output Parameter:
6668bb7acecfSBarry Smith . useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution
66698e4ac7eaSMatthew G. Knepley 
66708e4ac7eaSMatthew G. Knepley   Level: beginner
66718e4ac7eaSMatthew G. Knepley 
66721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetUseNatural()`, `DMCreate()`
66738e4ac7eaSMatthew G. Knepley @*/
6674d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetUseNatural(DM dm, PetscBool *useNatural)
6675d71ae5a4SJacob Faibussowitsch {
66768e4ac7eaSMatthew G. Knepley   PetscFunctionBegin;
66778e4ac7eaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
66784f572ea9SToby Isaac   PetscAssertPointer(useNatural, 2);
66798e4ac7eaSMatthew G. Knepley   *useNatural = dm->useNatural;
66803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
66818e4ac7eaSMatthew G. Knepley }
66828e4ac7eaSMatthew G. Knepley 
66838e4ac7eaSMatthew G. Knepley /*@
6684bb7acecfSBarry Smith   DMSetUseNatural - Set the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel
66858e4ac7eaSMatthew G. Knepley 
668620f4b53cSBarry Smith   Collective
66878e4ac7eaSMatthew G. Knepley 
66888e4ac7eaSMatthew G. Knepley   Input Parameters:
6689bb7acecfSBarry Smith + dm         - The `DM`
6690bb7acecfSBarry Smith - useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution
66918e4ac7eaSMatthew G. Knepley 
669273ff1848SBarry Smith   Level: beginner
669373ff1848SBarry Smith 
6694bb7acecfSBarry Smith   Note:
6695bb7acecfSBarry Smith   This also causes the map to be build after `DMCreateSubDM()` and `DMCreateSuperDM()`
66965d3b26e6SMatthew G. Knepley 
66971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetUseNatural()`, `DMCreate()`, `DMPlexDistribute()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
66988e4ac7eaSMatthew G. Knepley @*/
6699d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUseNatural(DM dm, PetscBool useNatural)
6700d71ae5a4SJacob Faibussowitsch {
67018e4ac7eaSMatthew G. Knepley   PetscFunctionBegin;
67028e4ac7eaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
67038833efb5SBlaise Bourdin   PetscValidLogicalCollectiveBool(dm, useNatural, 2);
67048e4ac7eaSMatthew G. Knepley   dm->useNatural = useNatural;
67053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
67068e4ac7eaSMatthew G. Knepley }
6707c58f1c22SToby Isaac 
6708cc4c1da9SBarry Smith /*@
6709bb7acecfSBarry Smith   DMCreateLabel - Create a label of the given name if it does not already exist in the `DM`
6710c58f1c22SToby Isaac 
6711c58f1c22SToby Isaac   Not Collective
6712c58f1c22SToby Isaac 
6713c58f1c22SToby Isaac   Input Parameters:
6714bb7acecfSBarry Smith + dm   - The `DM` object
6715c58f1c22SToby Isaac - name - The label name
6716c58f1c22SToby Isaac 
6717c58f1c22SToby Isaac   Level: intermediate
6718c58f1c22SToby Isaac 
67191cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6720c58f1c22SToby Isaac @*/
6721d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabel(DM dm, const char name[])
6722d71ae5a4SJacob Faibussowitsch {
67235d80c0bfSVaclav Hapla   PetscBool flg;
67245d80c0bfSVaclav Hapla   DMLabel   label;
6725c58f1c22SToby Isaac 
6726c58f1c22SToby Isaac   PetscFunctionBegin;
6727c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
67284f572ea9SToby Isaac   PetscAssertPointer(name, 2);
67299566063dSJacob Faibussowitsch   PetscCall(DMHasLabel(dm, name, &flg));
6730c58f1c22SToby Isaac   if (!flg) {
67319566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label));
67329566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dm, label));
67339566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&label));
6734c58f1c22SToby Isaac   }
67353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6736c58f1c22SToby Isaac }
6737c58f1c22SToby Isaac 
6738cc4c1da9SBarry Smith /*@
6739bb7acecfSBarry Smith   DMCreateLabelAtIndex - Create a label of the given name at the given index. If it already exists in the `DM`, move it to this index.
67400fdc7489SMatthew Knepley 
67410fdc7489SMatthew Knepley   Not Collective
67420fdc7489SMatthew Knepley 
67430fdc7489SMatthew Knepley   Input Parameters:
6744bb7acecfSBarry Smith + dm   - The `DM` object
67450fdc7489SMatthew Knepley . l    - The index for the label
67460fdc7489SMatthew Knepley - name - The label name
67470fdc7489SMatthew Knepley 
67480fdc7489SMatthew Knepley   Level: intermediate
67490fdc7489SMatthew Knepley 
67501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateLabel()`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
67510fdc7489SMatthew Knepley @*/
6752d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabelAtIndex(DM dm, PetscInt l, const char name[])
6753d71ae5a4SJacob Faibussowitsch {
67540fdc7489SMatthew Knepley   DMLabelLink orig, prev = NULL;
67550fdc7489SMatthew Knepley   DMLabel     label;
67560fdc7489SMatthew Knepley   PetscInt    Nl, m;
67570fdc7489SMatthew Knepley   PetscBool   flg, match;
67580fdc7489SMatthew Knepley   const char *lname;
67590fdc7489SMatthew Knepley 
67600fdc7489SMatthew Knepley   PetscFunctionBegin;
67610fdc7489SMatthew Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
67624f572ea9SToby Isaac   PetscAssertPointer(name, 3);
67639566063dSJacob Faibussowitsch   PetscCall(DMHasLabel(dm, name, &flg));
67640fdc7489SMatthew Knepley   if (!flg) {
67659566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label));
67669566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dm, label));
67679566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&label));
67680fdc7489SMatthew Knepley   }
67699566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(dm, &Nl));
677063a3b9bcSJacob Faibussowitsch   PetscCheck(l < Nl, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label index %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", l, Nl);
67710fdc7489SMatthew Knepley   for (m = 0, orig = dm->labels; m < Nl; ++m, prev = orig, orig = orig->next) {
67729566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)orig->label, &lname));
67739566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &match));
67740fdc7489SMatthew Knepley     if (match) break;
67750fdc7489SMatthew Knepley   }
67763ba16761SJacob Faibussowitsch   if (m == l) PetscFunctionReturn(PETSC_SUCCESS);
67770fdc7489SMatthew Knepley   if (!m) dm->labels = orig->next;
67780fdc7489SMatthew Knepley   else prev->next = orig->next;
67790fdc7489SMatthew Knepley   if (!l) {
67800fdc7489SMatthew Knepley     orig->next = dm->labels;
67810fdc7489SMatthew Knepley     dm->labels = orig;
67820fdc7489SMatthew Knepley   } else {
6783fbccb6d4SPierre Jolivet     for (m = 0, prev = dm->labels; m < l - 1; ++m, prev = prev->next);
67840fdc7489SMatthew Knepley     orig->next = prev->next;
67850fdc7489SMatthew Knepley     prev->next = orig;
67860fdc7489SMatthew Knepley   }
67873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
67880fdc7489SMatthew Knepley }
67890fdc7489SMatthew Knepley 
6790cc4c1da9SBarry Smith /*@
6791bb7acecfSBarry Smith   DMGetLabelValue - Get the value in a `DMLabel` for the given point, with -1 as the default
6792c58f1c22SToby Isaac 
6793c58f1c22SToby Isaac   Not Collective
6794c58f1c22SToby Isaac 
6795c58f1c22SToby Isaac   Input Parameters:
6796bb7acecfSBarry Smith + dm    - The `DM` object
6797c58f1c22SToby Isaac . name  - The label name
6798c58f1c22SToby Isaac - point - The mesh point
6799c58f1c22SToby Isaac 
6800c58f1c22SToby Isaac   Output Parameter:
6801c58f1c22SToby Isaac . value - The label value for this point, or -1 if the point is not in the label
6802c58f1c22SToby Isaac 
6803c58f1c22SToby Isaac   Level: beginner
6804c58f1c22SToby Isaac 
68051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6806c58f1c22SToby Isaac @*/
6807d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelValue(DM dm, const char name[], PetscInt point, PetscInt *value)
6808d71ae5a4SJacob Faibussowitsch {
6809c58f1c22SToby Isaac   DMLabel label;
6810c58f1c22SToby Isaac 
6811c58f1c22SToby Isaac   PetscFunctionBegin;
6812c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
68134f572ea9SToby Isaac   PetscAssertPointer(name, 2);
68149566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
68157a8be351SBarry Smith   PetscCheck(label, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No label named %s was found", name);
68169566063dSJacob Faibussowitsch   PetscCall(DMLabelGetValue(label, point, value));
68173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6818c58f1c22SToby Isaac }
6819c58f1c22SToby Isaac 
6820cc4c1da9SBarry Smith /*@
6821bb7acecfSBarry Smith   DMSetLabelValue - Add a point to a `DMLabel` with given value
6822c58f1c22SToby Isaac 
6823c58f1c22SToby Isaac   Not Collective
6824c58f1c22SToby Isaac 
6825c58f1c22SToby Isaac   Input Parameters:
6826bb7acecfSBarry Smith + dm    - The `DM` object
6827c58f1c22SToby Isaac . name  - The label name
6828c58f1c22SToby Isaac . point - The mesh point
6829c58f1c22SToby Isaac - value - The label value for this point
6830c58f1c22SToby Isaac 
6831c58f1c22SToby Isaac   Output Parameter:
6832c58f1c22SToby Isaac 
6833c58f1c22SToby Isaac   Level: beginner
6834c58f1c22SToby Isaac 
68351cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelSetValue()`, `DMGetStratumIS()`, `DMClearLabelValue()`
6836c58f1c22SToby Isaac @*/
6837d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue(DM dm, const char name[], PetscInt point, PetscInt value)
6838d71ae5a4SJacob Faibussowitsch {
6839c58f1c22SToby Isaac   DMLabel label;
6840c58f1c22SToby Isaac 
6841c58f1c22SToby Isaac   PetscFunctionBegin;
6842c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
68434f572ea9SToby Isaac   PetscAssertPointer(name, 2);
68449566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6845c58f1c22SToby Isaac   if (!label) {
68469566063dSJacob Faibussowitsch     PetscCall(DMCreateLabel(dm, name));
68479566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, name, &label));
6848c58f1c22SToby Isaac   }
68499566063dSJacob Faibussowitsch   PetscCall(DMLabelSetValue(label, point, value));
68503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6851c58f1c22SToby Isaac }
6852c58f1c22SToby Isaac 
6853cc4c1da9SBarry Smith /*@
6854bb7acecfSBarry Smith   DMClearLabelValue - Remove a point from a `DMLabel` with given value
6855c58f1c22SToby Isaac 
6856c58f1c22SToby Isaac   Not Collective
6857c58f1c22SToby Isaac 
6858c58f1c22SToby Isaac   Input Parameters:
6859bb7acecfSBarry Smith + dm    - The `DM` object
6860c58f1c22SToby Isaac . name  - The label name
6861c58f1c22SToby Isaac . point - The mesh point
6862c58f1c22SToby Isaac - value - The label value for this point
6863c58f1c22SToby Isaac 
6864c58f1c22SToby Isaac   Level: beginner
6865c58f1c22SToby Isaac 
68661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelClearValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6867c58f1c22SToby Isaac @*/
6868d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelValue(DM dm, const char name[], PetscInt point, PetscInt value)
6869d71ae5a4SJacob Faibussowitsch {
6870c58f1c22SToby Isaac   DMLabel label;
6871c58f1c22SToby Isaac 
6872c58f1c22SToby Isaac   PetscFunctionBegin;
6873c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
68744f572ea9SToby Isaac   PetscAssertPointer(name, 2);
68759566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
68763ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
68779566063dSJacob Faibussowitsch   PetscCall(DMLabelClearValue(label, point, value));
68783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6879c58f1c22SToby Isaac }
6880c58f1c22SToby Isaac 
6881cc4c1da9SBarry Smith /*@
6882bb7acecfSBarry Smith   DMGetLabelSize - Get the value of `DMLabelGetNumValues()` of a `DMLabel` in the `DM`
6883c58f1c22SToby Isaac 
6884c58f1c22SToby Isaac   Not Collective
6885c58f1c22SToby Isaac 
6886c58f1c22SToby Isaac   Input Parameters:
6887bb7acecfSBarry Smith + dm   - The `DM` object
6888c58f1c22SToby Isaac - name - The label name
6889c58f1c22SToby Isaac 
6890c58f1c22SToby Isaac   Output Parameter:
6891c58f1c22SToby Isaac . size - The number of different integer ids, or 0 if the label does not exist
6892c58f1c22SToby Isaac 
6893c58f1c22SToby Isaac   Level: beginner
6894c58f1c22SToby Isaac 
689573ff1848SBarry Smith   Developer Note:
6896bb7acecfSBarry Smith   This should be renamed to something like `DMGetLabelNumValues()` or removed.
6897bb7acecfSBarry Smith 
68981cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetNumValues()`, `DMSetLabelValue()`, `DMGetLabel()`
6899c58f1c22SToby Isaac @*/
6900d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelSize(DM dm, const char name[], PetscInt *size)
6901d71ae5a4SJacob Faibussowitsch {
6902c58f1c22SToby Isaac   DMLabel label;
6903c58f1c22SToby Isaac 
6904c58f1c22SToby Isaac   PetscFunctionBegin;
6905c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
69064f572ea9SToby Isaac   PetscAssertPointer(name, 2);
69074f572ea9SToby Isaac   PetscAssertPointer(size, 3);
69089566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6909c58f1c22SToby Isaac   *size = 0;
69103ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
69119566063dSJacob Faibussowitsch   PetscCall(DMLabelGetNumValues(label, size));
69123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6913c58f1c22SToby Isaac }
6914c58f1c22SToby Isaac 
6915cc4c1da9SBarry Smith /*@
6916bb7acecfSBarry Smith   DMGetLabelIdIS - Get the `DMLabelGetValueIS()` from a `DMLabel` in the `DM`
6917c58f1c22SToby Isaac 
6918c58f1c22SToby Isaac   Not Collective
6919c58f1c22SToby Isaac 
6920c58f1c22SToby Isaac   Input Parameters:
692160225df5SJacob Faibussowitsch + dm   - The `DM` object
6922c58f1c22SToby Isaac - name - The label name
6923c58f1c22SToby Isaac 
6924c58f1c22SToby Isaac   Output Parameter:
692520f4b53cSBarry Smith . ids - The integer ids, or `NULL` if the label does not exist
6926c58f1c22SToby Isaac 
6927c58f1c22SToby Isaac   Level: beginner
6928c58f1c22SToby Isaac 
69291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValueIS()`, `DMGetLabelSize()`
6930c58f1c22SToby Isaac @*/
6931d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelIdIS(DM dm, const char name[], IS *ids)
6932d71ae5a4SJacob Faibussowitsch {
6933c58f1c22SToby Isaac   DMLabel label;
6934c58f1c22SToby Isaac 
6935c58f1c22SToby Isaac   PetscFunctionBegin;
6936c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
69374f572ea9SToby Isaac   PetscAssertPointer(name, 2);
69384f572ea9SToby Isaac   PetscAssertPointer(ids, 3);
69399566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6940c58f1c22SToby Isaac   *ids = NULL;
6941dab2e251SBlaise Bourdin   if (label) {
69429566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValueIS(label, ids));
6943dab2e251SBlaise Bourdin   } else {
6944dab2e251SBlaise Bourdin     /* returning an empty IS */
69459566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_USE_POINTER, ids));
6946dab2e251SBlaise Bourdin   }
69473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6948c58f1c22SToby Isaac }
6949c58f1c22SToby Isaac 
6950cc4c1da9SBarry Smith /*@
6951c58f1c22SToby Isaac   DMGetStratumSize - Get the number of points in a label stratum
6952c58f1c22SToby Isaac 
6953c58f1c22SToby Isaac   Not Collective
6954c58f1c22SToby Isaac 
6955c58f1c22SToby Isaac   Input Parameters:
6956bb7acecfSBarry Smith + dm    - The `DM` object
6957b6971eaeSBarry Smith . name  - The label name of the stratum
6958c58f1c22SToby Isaac - value - The stratum value
6959c58f1c22SToby Isaac 
6960c58f1c22SToby Isaac   Output Parameter:
6961bb7acecfSBarry Smith . size - The number of points, also called the stratum size
6962c58f1c22SToby Isaac 
6963c58f1c22SToby Isaac   Level: beginner
6964c58f1c22SToby Isaac 
69651cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumSize()`, `DMGetLabelSize()`, `DMGetLabelIds()`
6966c58f1c22SToby Isaac @*/
6967d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumSize(DM dm, const char name[], PetscInt value, PetscInt *size)
6968d71ae5a4SJacob Faibussowitsch {
6969c58f1c22SToby Isaac   DMLabel label;
6970c58f1c22SToby Isaac 
6971c58f1c22SToby Isaac   PetscFunctionBegin;
6972c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
69734f572ea9SToby Isaac   PetscAssertPointer(name, 2);
69744f572ea9SToby Isaac   PetscAssertPointer(size, 4);
69759566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6976c58f1c22SToby Isaac   *size = 0;
69773ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
69789566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumSize(label, value, size));
69793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6980c58f1c22SToby Isaac }
6981c58f1c22SToby Isaac 
6982cc4c1da9SBarry Smith /*@
6983c58f1c22SToby Isaac   DMGetStratumIS - Get the points in a label stratum
6984c58f1c22SToby Isaac 
6985c58f1c22SToby Isaac   Not Collective
6986c58f1c22SToby Isaac 
6987c58f1c22SToby Isaac   Input Parameters:
6988bb7acecfSBarry Smith + dm    - The `DM` object
6989c58f1c22SToby Isaac . name  - The label name
6990c58f1c22SToby Isaac - value - The stratum value
6991c58f1c22SToby Isaac 
6992c58f1c22SToby Isaac   Output Parameter:
699320f4b53cSBarry Smith . points - The stratum points, or `NULL` if the label does not exist or does not have that value
6994c58f1c22SToby Isaac 
6995c58f1c22SToby Isaac   Level: beginner
6996c58f1c22SToby Isaac 
69971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumIS()`, `DMGetStratumSize()`
6998c58f1c22SToby Isaac @*/
6999d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumIS(DM dm, const char name[], PetscInt value, IS *points)
7000d71ae5a4SJacob Faibussowitsch {
7001c58f1c22SToby Isaac   DMLabel label;
7002c58f1c22SToby Isaac 
7003c58f1c22SToby Isaac   PetscFunctionBegin;
7004c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
70054f572ea9SToby Isaac   PetscAssertPointer(name, 2);
70064f572ea9SToby Isaac   PetscAssertPointer(points, 4);
70079566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
7008c58f1c22SToby Isaac   *points = NULL;
70093ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
70109566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(label, value, points));
70113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7012c58f1c22SToby Isaac }
7013c58f1c22SToby Isaac 
7014cc4c1da9SBarry Smith /*@
70159044fa66SMatthew G. Knepley   DMSetStratumIS - Set the points in a label stratum
70164de306b1SToby Isaac 
70174de306b1SToby Isaac   Not Collective
70184de306b1SToby Isaac 
70194de306b1SToby Isaac   Input Parameters:
7020bb7acecfSBarry Smith + dm     - The `DM` object
70214de306b1SToby Isaac . name   - The label name
70224de306b1SToby Isaac . value  - The stratum value
70234de306b1SToby Isaac - points - The stratum points
70244de306b1SToby Isaac 
70254de306b1SToby Isaac   Level: beginner
70264de306b1SToby Isaac 
70271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMClearLabelStratum()`, `DMLabelClearStratum()`, `DMLabelSetStratumIS()`, `DMGetStratumSize()`
70284de306b1SToby Isaac @*/
7029d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetStratumIS(DM dm, const char name[], PetscInt value, IS points)
7030d71ae5a4SJacob Faibussowitsch {
70314de306b1SToby Isaac   DMLabel label;
70324de306b1SToby Isaac 
70334de306b1SToby Isaac   PetscFunctionBegin;
70344de306b1SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
70354f572ea9SToby Isaac   PetscAssertPointer(name, 2);
7036292bffcbSToby Isaac   PetscValidHeaderSpecific(points, IS_CLASSID, 4);
70379566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
70383ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
70399566063dSJacob Faibussowitsch   PetscCall(DMLabelSetStratumIS(label, value, points));
70403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70414de306b1SToby Isaac }
70424de306b1SToby Isaac 
7043cc4c1da9SBarry Smith /*@
7044bb7acecfSBarry Smith   DMClearLabelStratum - Remove all points from a stratum from a `DMLabel`
7045c58f1c22SToby Isaac 
7046c58f1c22SToby Isaac   Not Collective
7047c58f1c22SToby Isaac 
7048c58f1c22SToby Isaac   Input Parameters:
7049bb7acecfSBarry Smith + dm    - The `DM` object
7050c58f1c22SToby Isaac . name  - The label name
7051c58f1c22SToby Isaac - value - The label value for this point
7052c58f1c22SToby Isaac 
7053c58f1c22SToby Isaac   Output Parameter:
7054c58f1c22SToby Isaac 
7055c58f1c22SToby Isaac   Level: beginner
7056c58f1c22SToby Isaac 
70571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMLabelClearStratum()`, `DMSetLabelValue()`, `DMGetStratumIS()`, `DMClearLabelValue()`
7058c58f1c22SToby Isaac @*/
7059d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelStratum(DM dm, const char name[], PetscInt value)
7060d71ae5a4SJacob Faibussowitsch {
7061c58f1c22SToby Isaac   DMLabel label;
7062c58f1c22SToby Isaac 
7063c58f1c22SToby Isaac   PetscFunctionBegin;
7064c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
70654f572ea9SToby Isaac   PetscAssertPointer(name, 2);
70669566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
70673ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
70689566063dSJacob Faibussowitsch   PetscCall(DMLabelClearStratum(label, value));
70693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7070c58f1c22SToby Isaac }
7071c58f1c22SToby Isaac 
7072c58f1c22SToby Isaac /*@
7073bb7acecfSBarry Smith   DMGetNumLabels - Return the number of labels defined by on the `DM`
7074c58f1c22SToby Isaac 
7075c58f1c22SToby Isaac   Not Collective
7076c58f1c22SToby Isaac 
7077c58f1c22SToby Isaac   Input Parameter:
7078bb7acecfSBarry Smith . dm - The `DM` object
7079c58f1c22SToby Isaac 
7080c58f1c22SToby Isaac   Output Parameter:
7081c58f1c22SToby Isaac . numLabels - the number of Labels
7082c58f1c22SToby Isaac 
7083c58f1c22SToby Isaac   Level: intermediate
7084c58f1c22SToby Isaac 
70851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabelName()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7086c58f1c22SToby Isaac @*/
7087d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumLabels(DM dm, PetscInt *numLabels)
7088d71ae5a4SJacob Faibussowitsch {
70895d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7090c58f1c22SToby Isaac   PetscInt    n    = 0;
7091c58f1c22SToby Isaac 
7092c58f1c22SToby Isaac   PetscFunctionBegin;
7093c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
70944f572ea9SToby Isaac   PetscAssertPointer(numLabels, 2);
70959371c9d4SSatish Balay   while (next) {
70969371c9d4SSatish Balay     ++n;
70979371c9d4SSatish Balay     next = next->next;
70989371c9d4SSatish Balay   }
7099c58f1c22SToby Isaac   *numLabels = n;
71003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7101c58f1c22SToby Isaac }
7102c58f1c22SToby Isaac 
7103cc4c1da9SBarry Smith /*@
7104c58f1c22SToby Isaac   DMGetLabelName - Return the name of nth label
7105c58f1c22SToby Isaac 
7106c58f1c22SToby Isaac   Not Collective
7107c58f1c22SToby Isaac 
7108c58f1c22SToby Isaac   Input Parameters:
7109bb7acecfSBarry Smith + dm - The `DM` object
7110c58f1c22SToby Isaac - n  - the label number
7111c58f1c22SToby Isaac 
7112c58f1c22SToby Isaac   Output Parameter:
7113c58f1c22SToby Isaac . name - the label name
7114c58f1c22SToby Isaac 
7115c58f1c22SToby Isaac   Level: intermediate
7116c58f1c22SToby Isaac 
711773ff1848SBarry Smith   Developer Note:
7118bb7acecfSBarry Smith   Some of the functions that appropriate on labels using their number have the suffix ByNum, others do not.
7119bb7acecfSBarry Smith 
71201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7121c58f1c22SToby Isaac @*/
7122cc4c1da9SBarry Smith PetscErrorCode DMGetLabelName(DM dm, PetscInt n, const char *name[])
7123d71ae5a4SJacob Faibussowitsch {
71245d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7125c58f1c22SToby Isaac   PetscInt    l    = 0;
7126c58f1c22SToby Isaac 
7127c58f1c22SToby Isaac   PetscFunctionBegin;
7128c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
71294f572ea9SToby Isaac   PetscAssertPointer(name, 3);
7130c58f1c22SToby Isaac   while (next) {
7131c58f1c22SToby Isaac     if (l == n) {
71329566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetName((PetscObject)next->label, name));
71333ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
7134c58f1c22SToby Isaac     }
7135c58f1c22SToby Isaac     ++l;
7136c58f1c22SToby Isaac     next = next->next;
7137c58f1c22SToby Isaac   }
713863a3b9bcSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n);
7139c58f1c22SToby Isaac }
7140c58f1c22SToby Isaac 
7141cc4c1da9SBarry Smith /*@
7142bb7acecfSBarry Smith   DMHasLabel - Determine whether the `DM` has a label of a given name
7143c58f1c22SToby Isaac 
7144c58f1c22SToby Isaac   Not Collective
7145c58f1c22SToby Isaac 
7146c58f1c22SToby Isaac   Input Parameters:
7147bb7acecfSBarry Smith + dm   - The `DM` object
7148c58f1c22SToby Isaac - name - The label name
7149c58f1c22SToby Isaac 
7150c58f1c22SToby Isaac   Output Parameter:
7151bb7acecfSBarry Smith . hasLabel - `PETSC_TRUE` if the label is present
7152c58f1c22SToby Isaac 
7153c58f1c22SToby Isaac   Level: intermediate
7154c58f1c22SToby Isaac 
71551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabel()`, `DMGetLabelByNum()`, `DMCreateLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7156c58f1c22SToby Isaac @*/
7157d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasLabel(DM dm, const char name[], PetscBool *hasLabel)
7158d71ae5a4SJacob Faibussowitsch {
71595d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7160d67d17b1SMatthew G. Knepley   const char *lname;
7161c58f1c22SToby Isaac 
7162c58f1c22SToby Isaac   PetscFunctionBegin;
7163c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
71644f572ea9SToby Isaac   PetscAssertPointer(name, 2);
71654f572ea9SToby Isaac   PetscAssertPointer(hasLabel, 3);
7166c58f1c22SToby Isaac   *hasLabel = PETSC_FALSE;
7167c58f1c22SToby Isaac   while (next) {
71689566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
71699566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, hasLabel));
7170c58f1c22SToby Isaac     if (*hasLabel) break;
7171c58f1c22SToby Isaac     next = next->next;
7172c58f1c22SToby Isaac   }
71733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7174c58f1c22SToby Isaac }
7175c58f1c22SToby Isaac 
7176a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown
7177cc4c1da9SBarry Smith /*@
717820f4b53cSBarry Smith   DMGetLabel - Return the label of a given name, or `NULL`, from a `DM`
7179c58f1c22SToby Isaac 
7180c58f1c22SToby Isaac   Not Collective
7181c58f1c22SToby Isaac 
7182c58f1c22SToby Isaac   Input Parameters:
7183bb7acecfSBarry Smith + dm   - The `DM` object
7184c58f1c22SToby Isaac - name - The label name
7185c58f1c22SToby Isaac 
7186c58f1c22SToby Isaac   Output Parameter:
718720f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent
7188c58f1c22SToby Isaac 
7189bb7acecfSBarry Smith   Default labels in a `DMPLEX`:
7190bb7acecfSBarry Smith + "depth"       - Holds the depth (co-dimension) of each mesh point
7191bb7acecfSBarry Smith . "celltype"    - Holds the topological type of each cell
7192bb7acecfSBarry Smith . "ghost"       - If the DM is distributed with overlap, this marks the cells and faces in the overlap
7193bb7acecfSBarry Smith . "Cell Sets"   - Mirrors the cell sets defined by GMsh and ExodusII
7194bb7acecfSBarry Smith . "Face Sets"   - Mirrors the face sets defined by GMsh and ExodusII
7195bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh
71966d7c9049SMatthew G. Knepley 
7197c58f1c22SToby Isaac   Level: intermediate
7198c58f1c22SToby Isaac 
719960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMHasLabel()`, `DMGetLabelByNum()`, `DMAddLabel()`, `DMCreateLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()`
7200c58f1c22SToby Isaac @*/
7201d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabel(DM dm, const char name[], DMLabel *label)
7202d71ae5a4SJacob Faibussowitsch {
72035d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7204c58f1c22SToby Isaac   PetscBool   hasLabel;
7205d67d17b1SMatthew G. Knepley   const char *lname;
7206c58f1c22SToby Isaac 
7207c58f1c22SToby Isaac   PetscFunctionBegin;
7208c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
72094f572ea9SToby Isaac   PetscAssertPointer(name, 2);
72104f572ea9SToby Isaac   PetscAssertPointer(label, 3);
7211c58f1c22SToby Isaac   *label = NULL;
7212c58f1c22SToby Isaac   while (next) {
72139566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
72149566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &hasLabel));
7215c58f1c22SToby Isaac     if (hasLabel) {
7216c58f1c22SToby Isaac       *label = next->label;
7217c58f1c22SToby Isaac       break;
7218c58f1c22SToby Isaac     }
7219c58f1c22SToby Isaac     next = next->next;
7220c58f1c22SToby Isaac   }
72213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7222c58f1c22SToby Isaac }
7223c58f1c22SToby Isaac 
7224cc4c1da9SBarry Smith /*@
7225bb7acecfSBarry Smith   DMGetLabelByNum - Return the nth label on a `DM`
7226c58f1c22SToby Isaac 
7227c58f1c22SToby Isaac   Not Collective
7228c58f1c22SToby Isaac 
7229c58f1c22SToby Isaac   Input Parameters:
7230bb7acecfSBarry Smith + dm - The `DM` object
7231c58f1c22SToby Isaac - n  - the label number
7232c58f1c22SToby Isaac 
7233c58f1c22SToby Isaac   Output Parameter:
7234c58f1c22SToby Isaac . label - the label
7235c58f1c22SToby Isaac 
7236c58f1c22SToby Isaac   Level: intermediate
7237c58f1c22SToby Isaac 
72381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7239c58f1c22SToby Isaac @*/
7240d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelByNum(DM dm, PetscInt n, DMLabel *label)
7241d71ae5a4SJacob Faibussowitsch {
72425d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7243c58f1c22SToby Isaac   PetscInt    l    = 0;
7244c58f1c22SToby Isaac 
7245c58f1c22SToby Isaac   PetscFunctionBegin;
7246c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
72474f572ea9SToby Isaac   PetscAssertPointer(label, 3);
7248c58f1c22SToby Isaac   while (next) {
7249c58f1c22SToby Isaac     if (l == n) {
7250c58f1c22SToby Isaac       *label = next->label;
72513ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
7252c58f1c22SToby Isaac     }
7253c58f1c22SToby Isaac     ++l;
7254c58f1c22SToby Isaac     next = next->next;
7255c58f1c22SToby Isaac   }
725663a3b9bcSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n);
7257c58f1c22SToby Isaac }
7258c58f1c22SToby Isaac 
7259cc4c1da9SBarry Smith /*@
7260bb7acecfSBarry Smith   DMAddLabel - Add the label to this `DM`
7261c58f1c22SToby Isaac 
7262c58f1c22SToby Isaac   Not Collective
7263c58f1c22SToby Isaac 
7264c58f1c22SToby Isaac   Input Parameters:
7265bb7acecfSBarry Smith + dm    - The `DM` object
7266bb7acecfSBarry Smith - label - The `DMLabel`
7267c58f1c22SToby Isaac 
7268c58f1c22SToby Isaac   Level: developer
7269c58f1c22SToby Isaac 
727060225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7271c58f1c22SToby Isaac @*/
7272d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddLabel(DM dm, DMLabel label)
7273d71ae5a4SJacob Faibussowitsch {
72745d80c0bfSVaclav Hapla   DMLabelLink l, *p, tmpLabel;
7275c58f1c22SToby Isaac   PetscBool   hasLabel;
7276d67d17b1SMatthew G. Knepley   const char *lname;
72775d80c0bfSVaclav Hapla   PetscBool   flg;
7278c58f1c22SToby Isaac 
7279c58f1c22SToby Isaac   PetscFunctionBegin;
7280c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
72819566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetName((PetscObject)label, &lname));
72829566063dSJacob Faibussowitsch   PetscCall(DMHasLabel(dm, lname, &hasLabel));
72837a8be351SBarry Smith   PetscCheck(!hasLabel, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in this DM", lname);
72849566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(1, &tmpLabel));
7285c58f1c22SToby Isaac   tmpLabel->label  = label;
7286c58f1c22SToby Isaac   tmpLabel->output = PETSC_TRUE;
72875d80c0bfSVaclav Hapla   for (p = &dm->labels; (l = *p); p = &l->next) { }
72885d80c0bfSVaclav Hapla   *p = tmpLabel;
72899566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
72909566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(lname, "depth", &flg));
72915d80c0bfSVaclav Hapla   if (flg) dm->depthLabel = label;
72929566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(lname, "celltype", &flg));
7293ba2698f1SMatthew G. Knepley   if (flg) dm->celltypeLabel = label;
72943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7295c58f1c22SToby Isaac }
7296c58f1c22SToby Isaac 
7297a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown
7298cc4c1da9SBarry Smith /*@
72994a7ee7d0SMatthew G. Knepley   DMSetLabel - Replaces the label of a given name, or ignores it if the name is not present
73004a7ee7d0SMatthew G. Knepley 
73014a7ee7d0SMatthew G. Knepley   Not Collective
73024a7ee7d0SMatthew G. Knepley 
73034a7ee7d0SMatthew G. Knepley   Input Parameters:
7304bb7acecfSBarry Smith + dm    - The `DM` object
7305bb7acecfSBarry Smith - label - The `DMLabel`, having the same name, to substitute
73064a7ee7d0SMatthew G. Knepley 
7307bb7acecfSBarry Smith   Default labels in a `DMPLEX`:
7308bb7acecfSBarry Smith + "depth"       - Holds the depth (co-dimension) of each mesh point
7309bb7acecfSBarry Smith . "celltype"    - Holds the topological type of each cell
7310bb7acecfSBarry Smith . "ghost"       - If the DM is distributed with overlap, this marks the cells and faces in the overlap
7311bb7acecfSBarry Smith . "Cell Sets"   - Mirrors the cell sets defined by GMsh and ExodusII
7312bb7acecfSBarry Smith . "Face Sets"   - Mirrors the face sets defined by GMsh and ExodusII
7313bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh
73144a7ee7d0SMatthew G. Knepley 
73154a7ee7d0SMatthew G. Knepley   Level: intermediate
73164a7ee7d0SMatthew G. Knepley 
73171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()`
73184a7ee7d0SMatthew G. Knepley @*/
7319d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabel(DM dm, DMLabel label)
7320d71ae5a4SJacob Faibussowitsch {
73214a7ee7d0SMatthew G. Knepley   DMLabelLink next = dm->labels;
73224a7ee7d0SMatthew G. Knepley   PetscBool   hasLabel, flg;
73234a7ee7d0SMatthew G. Knepley   const char *name, *lname;
73244a7ee7d0SMatthew G. Knepley 
73254a7ee7d0SMatthew G. Knepley   PetscFunctionBegin;
73264a7ee7d0SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
73274a7ee7d0SMatthew G. Knepley   PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
73289566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetName((PetscObject)label, &name));
73294a7ee7d0SMatthew G. Knepley   while (next) {
73309566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
73319566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &hasLabel));
73324a7ee7d0SMatthew G. Knepley     if (hasLabel) {
73339566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)label));
73349566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(lname, "depth", &flg));
73354a7ee7d0SMatthew G. Knepley       if (flg) dm->depthLabel = label;
73369566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(lname, "celltype", &flg));
73374a7ee7d0SMatthew G. Knepley       if (flg) dm->celltypeLabel = label;
73389566063dSJacob Faibussowitsch       PetscCall(DMLabelDestroy(&next->label));
73394a7ee7d0SMatthew G. Knepley       next->label = label;
73404a7ee7d0SMatthew G. Knepley       break;
73414a7ee7d0SMatthew G. Knepley     }
73424a7ee7d0SMatthew G. Knepley     next = next->next;
73434a7ee7d0SMatthew G. Knepley   }
73443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
73454a7ee7d0SMatthew G. Knepley }
73464a7ee7d0SMatthew G. Knepley 
7347cc4c1da9SBarry Smith /*@
7348bb7acecfSBarry Smith   DMRemoveLabel - Remove the label given by name from this `DM`
7349c58f1c22SToby Isaac 
7350c58f1c22SToby Isaac   Not Collective
7351c58f1c22SToby Isaac 
7352c58f1c22SToby Isaac   Input Parameters:
7353bb7acecfSBarry Smith + dm   - The `DM` object
7354c58f1c22SToby Isaac - name - The label name
7355c58f1c22SToby Isaac 
7356c58f1c22SToby Isaac   Output Parameter:
735720f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent. Pass in `NULL` to call `DMLabelDestroy()` on the label, otherwise the
7358bb7acecfSBarry Smith           caller is responsible for calling `DMLabelDestroy()`.
7359c58f1c22SToby Isaac 
7360c58f1c22SToby Isaac   Level: developer
7361c58f1c22SToby Isaac 
73621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabelBySelf()`
7363c58f1c22SToby Isaac @*/
7364d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabel(DM dm, const char name[], DMLabel *label)
7365d71ae5a4SJacob Faibussowitsch {
736695d578d6SVaclav Hapla   DMLabelLink link, *pnext;
7367c58f1c22SToby Isaac   PetscBool   hasLabel;
7368d67d17b1SMatthew G. Knepley   const char *lname;
7369c58f1c22SToby Isaac 
7370c58f1c22SToby Isaac   PetscFunctionBegin;
7371c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
73724f572ea9SToby Isaac   PetscAssertPointer(name, 2);
7373e5472504SVaclav Hapla   if (label) {
73744f572ea9SToby Isaac     PetscAssertPointer(label, 3);
7375c58f1c22SToby Isaac     *label = NULL;
7376e5472504SVaclav Hapla   }
73775d80c0bfSVaclav Hapla   for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) {
73789566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)link->label, &lname));
73799566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &hasLabel));
7380c58f1c22SToby Isaac     if (hasLabel) {
738195d578d6SVaclav Hapla       *pnext = link->next; /* Remove from list */
73829566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "depth", &hasLabel));
738395d578d6SVaclav Hapla       if (hasLabel) dm->depthLabel = NULL;
73849566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "celltype", &hasLabel));
7385ba2698f1SMatthew G. Knepley       if (hasLabel) dm->celltypeLabel = NULL;
738695d578d6SVaclav Hapla       if (label) *label = link->label;
73879566063dSJacob Faibussowitsch       else PetscCall(DMLabelDestroy(&link->label));
73889566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
7389c58f1c22SToby Isaac       break;
7390c58f1c22SToby Isaac     }
7391c58f1c22SToby Isaac   }
73923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7393c58f1c22SToby Isaac }
7394c58f1c22SToby Isaac 
7395306894acSVaclav Hapla /*@
7396bb7acecfSBarry Smith   DMRemoveLabelBySelf - Remove the label from this `DM`
7397306894acSVaclav Hapla 
7398306894acSVaclav Hapla   Not Collective
7399306894acSVaclav Hapla 
7400306894acSVaclav Hapla   Input Parameters:
7401bb7acecfSBarry Smith + dm           - The `DM` object
7402bb7acecfSBarry Smith . label        - The `DMLabel` to be removed from the `DM`
740320f4b53cSBarry Smith - failNotFound - Should it fail if the label is not found in the `DM`?
7404306894acSVaclav Hapla 
7405306894acSVaclav Hapla   Level: developer
7406306894acSVaclav Hapla 
7407bb7acecfSBarry Smith   Note:
7408306894acSVaclav Hapla   Only exactly the same instance is removed if found, name match is ignored.
7409bb7acecfSBarry Smith   If the `DM` has an exclusive reference to the label, the label gets destroyed and
7410306894acSVaclav Hapla   *label nullified.
7411306894acSVaclav Hapla 
74121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()` `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabel()`
7413306894acSVaclav Hapla @*/
7414d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabelBySelf(DM dm, DMLabel *label, PetscBool failNotFound)
7415d71ae5a4SJacob Faibussowitsch {
741643e45a93SVaclav Hapla   DMLabelLink link, *pnext;
7417306894acSVaclav Hapla   PetscBool   hasLabel = PETSC_FALSE;
7418306894acSVaclav Hapla 
7419306894acSVaclav Hapla   PetscFunctionBegin;
7420306894acSVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
74214f572ea9SToby Isaac   PetscAssertPointer(label, 2);
74223ba16761SJacob Faibussowitsch   if (!*label && !failNotFound) PetscFunctionReturn(PETSC_SUCCESS);
7423306894acSVaclav Hapla   PetscValidHeaderSpecific(*label, DMLABEL_CLASSID, 2);
7424306894acSVaclav Hapla   PetscValidLogicalCollectiveBool(dm, failNotFound, 3);
74255d80c0bfSVaclav Hapla   for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) {
742643e45a93SVaclav Hapla     if (*label == link->label) {
7427306894acSVaclav Hapla       hasLabel = PETSC_TRUE;
742843e45a93SVaclav Hapla       *pnext   = link->next; /* Remove from list */
7429306894acSVaclav Hapla       if (*label == dm->depthLabel) dm->depthLabel = NULL;
7430ba2698f1SMatthew G. Knepley       if (*label == dm->celltypeLabel) dm->celltypeLabel = NULL;
743143e45a93SVaclav Hapla       if (((PetscObject)link->label)->refct < 2) *label = NULL; /* nullify if exclusive reference */
74329566063dSJacob Faibussowitsch       PetscCall(DMLabelDestroy(&link->label));
74339566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
7434306894acSVaclav Hapla       break;
7435306894acSVaclav Hapla     }
7436306894acSVaclav Hapla   }
74377a8be351SBarry Smith   PetscCheck(hasLabel || !failNotFound, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Given label not found in DM");
74383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7439306894acSVaclav Hapla }
7440306894acSVaclav Hapla 
7441cc4c1da9SBarry Smith /*@
7442c58f1c22SToby Isaac   DMGetLabelOutput - Get the output flag for a given label
7443c58f1c22SToby Isaac 
7444c58f1c22SToby Isaac   Not Collective
7445c58f1c22SToby Isaac 
7446c58f1c22SToby Isaac   Input Parameters:
7447bb7acecfSBarry Smith + dm   - The `DM` object
7448c58f1c22SToby Isaac - name - The label name
7449c58f1c22SToby Isaac 
7450c58f1c22SToby Isaac   Output Parameter:
7451c58f1c22SToby Isaac . output - The flag for output
7452c58f1c22SToby Isaac 
7453c58f1c22SToby Isaac   Level: developer
7454c58f1c22SToby Isaac 
74551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMSetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7456c58f1c22SToby Isaac @*/
7457d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelOutput(DM dm, const char name[], PetscBool *output)
7458d71ae5a4SJacob Faibussowitsch {
74595d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7460d67d17b1SMatthew G. Knepley   const char *lname;
7461c58f1c22SToby Isaac 
7462c58f1c22SToby Isaac   PetscFunctionBegin;
7463c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
74644f572ea9SToby Isaac   PetscAssertPointer(name, 2);
74654f572ea9SToby Isaac   PetscAssertPointer(output, 3);
7466c58f1c22SToby Isaac   while (next) {
7467c58f1c22SToby Isaac     PetscBool flg;
7468c58f1c22SToby Isaac 
74699566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
74709566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &flg));
74719371c9d4SSatish Balay     if (flg) {
74729371c9d4SSatish Balay       *output = next->output;
74733ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
74749371c9d4SSatish Balay     }
7475c58f1c22SToby Isaac     next = next->next;
7476c58f1c22SToby Isaac   }
747798921bdaSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name);
7478c58f1c22SToby Isaac }
7479c58f1c22SToby Isaac 
7480cc4c1da9SBarry Smith /*@
7481bb7acecfSBarry Smith   DMSetLabelOutput - Set if a given label should be saved to a `PetscViewer` in calls to `DMView()`
7482c58f1c22SToby Isaac 
7483c58f1c22SToby Isaac   Not Collective
7484c58f1c22SToby Isaac 
7485c58f1c22SToby Isaac   Input Parameters:
7486bb7acecfSBarry Smith + dm     - The `DM` object
7487c58f1c22SToby Isaac . name   - The label name
7488bb7acecfSBarry Smith - output - `PETSC_TRUE` to save the label to the viewer
7489c58f1c22SToby Isaac 
7490c58f1c22SToby Isaac   Level: developer
7491c58f1c22SToby Isaac 
74921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetOutputFlag()`, `DMGetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7493c58f1c22SToby Isaac @*/
7494d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelOutput(DM dm, const char name[], PetscBool output)
7495d71ae5a4SJacob Faibussowitsch {
74965d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7497d67d17b1SMatthew G. Knepley   const char *lname;
7498c58f1c22SToby Isaac 
7499c58f1c22SToby Isaac   PetscFunctionBegin;
7500c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
75014f572ea9SToby Isaac   PetscAssertPointer(name, 2);
7502c58f1c22SToby Isaac   while (next) {
7503c58f1c22SToby Isaac     PetscBool flg;
7504c58f1c22SToby Isaac 
75059566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
75069566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &flg));
75079371c9d4SSatish Balay     if (flg) {
75089371c9d4SSatish Balay       next->output = output;
75093ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
75109371c9d4SSatish Balay     }
7511c58f1c22SToby Isaac     next = next->next;
7512c58f1c22SToby Isaac   }
751398921bdaSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name);
7514c58f1c22SToby Isaac }
7515c58f1c22SToby Isaac 
7516c58f1c22SToby Isaac /*@
7517bb7acecfSBarry Smith   DMCopyLabels - Copy labels from one `DM` mesh to another `DM` with a superset of the points
7518c58f1c22SToby Isaac 
751920f4b53cSBarry Smith   Collective
7520c58f1c22SToby Isaac 
7521d8d19677SJose E. Roman   Input Parameters:
7522bb7acecfSBarry Smith + dmA   - The `DM` object with initial labels
7523bb7acecfSBarry Smith . dmB   - The `DM` object to which labels are copied
7524bb7acecfSBarry Smith . mode  - Copy labels by pointers (`PETSC_OWN_POINTER`) or duplicate them (`PETSC_COPY_VALUES`)
7525bb7acecfSBarry Smith . all   - Copy all labels including "depth", "dim", and "celltype" (`PETSC_TRUE`) which are otherwise ignored (`PETSC_FALSE`)
7526bb7acecfSBarry Smith - emode - How to behave when a `DMLabel` in the source and destination `DM`s with the same name is encountered (see `DMCopyLabelsMode`)
7527c58f1c22SToby Isaac 
7528c58f1c22SToby Isaac   Level: intermediate
7529c58f1c22SToby Isaac 
7530bb7acecfSBarry Smith   Note:
75312cbb9b06SVaclav Hapla   This is typically used when interpolating or otherwise adding to a mesh, or testing.
7532c58f1c22SToby Isaac 
75331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`
7534c58f1c22SToby Isaac @*/
7535d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyLabels(DM dmA, DM dmB, PetscCopyMode mode, PetscBool all, DMCopyLabelsMode emode)
7536d71ae5a4SJacob Faibussowitsch {
75372cbb9b06SVaclav Hapla   DMLabel     label, labelNew, labelOld;
7538c58f1c22SToby Isaac   const char *name;
7539c58f1c22SToby Isaac   PetscBool   flg;
75405d80c0bfSVaclav Hapla   DMLabelLink link;
7541c58f1c22SToby Isaac 
75425d80c0bfSVaclav Hapla   PetscFunctionBegin;
75435d80c0bfSVaclav Hapla   PetscValidHeaderSpecific(dmA, DM_CLASSID, 1);
75445d80c0bfSVaclav Hapla   PetscValidHeaderSpecific(dmB, DM_CLASSID, 2);
75455d80c0bfSVaclav Hapla   PetscValidLogicalCollectiveEnum(dmA, mode, 3);
75465d80c0bfSVaclav Hapla   PetscValidLogicalCollectiveBool(dmA, all, 4);
75477a8be351SBarry Smith   PetscCheck(mode != PETSC_USE_POINTER, PetscObjectComm((PetscObject)dmA), PETSC_ERR_SUP, "PETSC_USE_POINTER not supported for objects");
75483ba16761SJacob Faibussowitsch   if (dmA == dmB) PetscFunctionReturn(PETSC_SUCCESS);
75495d80c0bfSVaclav Hapla   for (link = dmA->labels; link; link = link->next) {
75505d80c0bfSVaclav Hapla     label = link->label;
75519566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)label, &name));
75525d80c0bfSVaclav Hapla     if (!all) {
75539566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "depth", &flg));
7554c58f1c22SToby Isaac       if (flg) continue;
75559566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "dim", &flg));
75567d5acc75SStefano Zampini       if (flg) continue;
75579566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "celltype", &flg));
7558ba2698f1SMatthew G. Knepley       if (flg) continue;
75595d80c0bfSVaclav Hapla     }
75609566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dmB, name, &labelOld));
75612cbb9b06SVaclav Hapla     if (labelOld) {
75622cbb9b06SVaclav Hapla       switch (emode) {
7563d71ae5a4SJacob Faibussowitsch       case DM_COPY_LABELS_KEEP:
7564d71ae5a4SJacob Faibussowitsch         continue;
7565d71ae5a4SJacob Faibussowitsch       case DM_COPY_LABELS_REPLACE:
7566d71ae5a4SJacob Faibussowitsch         PetscCall(DMRemoveLabelBySelf(dmB, &labelOld, PETSC_TRUE));
7567d71ae5a4SJacob Faibussowitsch         break;
7568d71ae5a4SJacob Faibussowitsch       case DM_COPY_LABELS_FAIL:
7569d71ae5a4SJacob Faibussowitsch         SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in destination DM", name);
7570d71ae5a4SJacob Faibussowitsch       default:
7571d71ae5a4SJacob Faibussowitsch         SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Unhandled DMCopyLabelsMode %d", (int)emode);
75722cbb9b06SVaclav Hapla       }
75732cbb9b06SVaclav Hapla     }
75745d80c0bfSVaclav Hapla     if (mode == PETSC_COPY_VALUES) {
75759566063dSJacob Faibussowitsch       PetscCall(DMLabelDuplicate(label, &labelNew));
75765d80c0bfSVaclav Hapla     } else {
75775d80c0bfSVaclav Hapla       labelNew = label;
75785d80c0bfSVaclav Hapla     }
75799566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dmB, labelNew));
75809566063dSJacob Faibussowitsch     if (mode == PETSC_COPY_VALUES) PetscCall(DMLabelDestroy(&labelNew));
7581c58f1c22SToby Isaac   }
75823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7583c58f1c22SToby Isaac }
7584461a15a0SLisandro Dalcin 
7585609dae6eSVaclav Hapla /*@C
7586b4028c23SStefano Zampini   DMCompareLabels - Compare labels between two `DM` objects
7587609dae6eSVaclav Hapla 
758820f4b53cSBarry Smith   Collective; No Fortran Support
7589609dae6eSVaclav Hapla 
7590609dae6eSVaclav Hapla   Input Parameters:
7591bb7acecfSBarry Smith + dm0 - First `DM` object
7592bb7acecfSBarry Smith - dm1 - Second `DM` object
7593609dae6eSVaclav Hapla 
7594a4e35b19SJacob Faibussowitsch   Output Parameters:
7595ce78bad3SBarry Smith + equal   - (Optional) Flag whether labels of `dm0` and `dm1` are the same
759620f4b53cSBarry Smith - message - (Optional) Message describing the difference, or `NULL` if there is no difference
7597609dae6eSVaclav Hapla 
7598609dae6eSVaclav Hapla   Level: intermediate
7599609dae6eSVaclav Hapla 
7600609dae6eSVaclav Hapla   Notes:
7601bb7acecfSBarry Smith   The output flag equal will be the same on all processes.
7602bb7acecfSBarry Smith 
760320f4b53cSBarry Smith   If equal is passed as `NULL` and difference is found, an error is thrown on all processes.
7604bb7acecfSBarry Smith 
760520f4b53cSBarry Smith   Make sure to pass equal is `NULL` on all processes or none of them.
7606609dae6eSVaclav Hapla 
76075efe38ccSVaclav Hapla   The output message is set independently on each rank.
7608bb7acecfSBarry Smith 
7609bb7acecfSBarry Smith   message must be freed with `PetscFree()`
7610bb7acecfSBarry Smith 
7611ce78bad3SBarry Smith   If message is passed as `NULL` and a difference is found, the difference description is printed to `stderr` in synchronized manner.
7612bb7acecfSBarry Smith 
761320f4b53cSBarry Smith   Make sure to pass message as `NULL` on all processes or no processes.
7614609dae6eSVaclav Hapla 
7615609dae6eSVaclav Hapla   Labels are matched by name. If the number of labels and their names are equal,
7616bb7acecfSBarry Smith   `DMLabelCompare()` is used to compare each pair of labels with the same name.
7617609dae6eSVaclav Hapla 
7618cc4c1da9SBarry Smith   Developer Note:
7619ce78bad3SBarry Smith   Cannot automatically generate the Fortran stub because `message` must be freed with `PetscFree()`
7620cc4c1da9SBarry Smith 
76211cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`, `DMLabelCompare()`
7622609dae6eSVaclav Hapla @*/
7623ce78bad3SBarry Smith PetscErrorCode DMCompareLabels(DM dm0, DM dm1, PetscBool *equal, char *message[]) PeNS
7624d71ae5a4SJacob Faibussowitsch {
76255efe38ccSVaclav Hapla   PetscInt    n, i;
7626609dae6eSVaclav Hapla   char        msg[PETSC_MAX_PATH_LEN] = "";
76275efe38ccSVaclav Hapla   PetscBool   eq;
7628609dae6eSVaclav Hapla   MPI_Comm    comm;
76295efe38ccSVaclav Hapla   PetscMPIInt rank;
7630609dae6eSVaclav Hapla 
7631609dae6eSVaclav Hapla   PetscFunctionBegin;
7632609dae6eSVaclav Hapla   PetscValidHeaderSpecific(dm0, DM_CLASSID, 1);
7633609dae6eSVaclav Hapla   PetscValidHeaderSpecific(dm1, DM_CLASSID, 2);
7634609dae6eSVaclav Hapla   PetscCheckSameComm(dm0, 1, dm1, 2);
76354f572ea9SToby Isaac   if (equal) PetscAssertPointer(equal, 3);
76364f572ea9SToby Isaac   if (message) PetscAssertPointer(message, 4);
76379566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm0, &comm));
76389566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
76395efe38ccSVaclav Hapla   {
76405efe38ccSVaclav Hapla     PetscInt n1;
76415efe38ccSVaclav Hapla 
76429566063dSJacob Faibussowitsch     PetscCall(DMGetNumLabels(dm0, &n));
76439566063dSJacob Faibussowitsch     PetscCall(DMGetNumLabels(dm1, &n1));
76445efe38ccSVaclav Hapla     eq = (PetscBool)(n == n1);
764548a46eb9SPierre Jolivet     if (!eq) PetscCall(PetscSNPrintf(msg, sizeof(msg), "Number of labels in dm0 = %" PetscInt_FMT " != %" PetscInt_FMT " = Number of labels in dm1", n, n1));
7646462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm));
76475efe38ccSVaclav Hapla     if (!eq) goto finish;
76485efe38ccSVaclav Hapla   }
76495efe38ccSVaclav Hapla   for (i = 0; i < n; i++) {
7650609dae6eSVaclav Hapla     DMLabel     l0, l1;
7651609dae6eSVaclav Hapla     const char *name;
7652609dae6eSVaclav Hapla     char       *msgInner;
7653609dae6eSVaclav Hapla 
7654609dae6eSVaclav Hapla     /* Ignore label order */
76559566063dSJacob Faibussowitsch     PetscCall(DMGetLabelByNum(dm0, i, &l0));
76569566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)l0, &name));
76579566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm1, name, &l1));
7658609dae6eSVaclav Hapla     if (!l1) {
765963a3b9bcSJacob Faibussowitsch       PetscCall(PetscSNPrintf(msg, sizeof(msg), "Label \"%s\" (#%" PetscInt_FMT " in dm0) not found in dm1", name, i));
76605efe38ccSVaclav Hapla       eq = PETSC_FALSE;
76615efe38ccSVaclav Hapla       break;
7662609dae6eSVaclav Hapla     }
76639566063dSJacob Faibussowitsch     PetscCall(DMLabelCompare(comm, l0, l1, &eq, &msgInner));
76649566063dSJacob Faibussowitsch     PetscCall(PetscStrncpy(msg, msgInner, sizeof(msg)));
76659566063dSJacob Faibussowitsch     PetscCall(PetscFree(msgInner));
76665efe38ccSVaclav Hapla     if (!eq) break;
7667609dae6eSVaclav Hapla   }
7668462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm));
7669609dae6eSVaclav Hapla finish:
76705efe38ccSVaclav Hapla   /* If message output arg not set, print to stderr */
7671609dae6eSVaclav Hapla   if (message) {
7672609dae6eSVaclav Hapla     *message = NULL;
767348a46eb9SPierre Jolivet     if (msg[0]) PetscCall(PetscStrallocpy(msg, message));
76745efe38ccSVaclav Hapla   } else {
767548a46eb9SPierre Jolivet     if (msg[0]) PetscCall(PetscSynchronizedFPrintf(comm, PETSC_STDERR, "[%d] %s\n", rank, msg));
76769566063dSJacob Faibussowitsch     PetscCall(PetscSynchronizedFlush(comm, PETSC_STDERR));
76775efe38ccSVaclav Hapla   }
76785efe38ccSVaclav Hapla   /* If same output arg not ser and labels are not equal, throw error */
76795efe38ccSVaclav Hapla   if (equal) *equal = eq;
76807a8be351SBarry Smith   else PetscCheck(eq, comm, PETSC_ERR_ARG_INCOMP, "DMLabels are not the same in dm0 and dm1");
76813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7682609dae6eSVaclav Hapla }
7683609dae6eSVaclav Hapla 
7684d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue_Fast(DM dm, DMLabel *label, const char name[], PetscInt point, PetscInt value)
7685d71ae5a4SJacob Faibussowitsch {
7686461a15a0SLisandro Dalcin   PetscFunctionBegin;
76874f572ea9SToby Isaac   PetscAssertPointer(label, 2);
7688461a15a0SLisandro Dalcin   if (!*label) {
76899566063dSJacob Faibussowitsch     PetscCall(DMCreateLabel(dm, name));
76909566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, name, label));
7691461a15a0SLisandro Dalcin   }
76929566063dSJacob Faibussowitsch   PetscCall(DMLabelSetValue(*label, point, value));
76933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7694461a15a0SLisandro Dalcin }
7695461a15a0SLisandro Dalcin 
76960fdc7489SMatthew Knepley /*
76970fdc7489SMatthew Knepley   Many mesh programs, such as Triangle and TetGen, allow only a single label for each mesh point. Therefore, we would
76980fdc7489SMatthew Knepley   like to encode all label IDs using a single, universal label. We can do this by assigning an integer to every
76990fdc7489SMatthew Knepley   (label, id) pair in the DM.
77000fdc7489SMatthew Knepley 
77010fdc7489SMatthew Knepley   However, a mesh point can have multiple labels, so we must separate all these values. We will assign a bit range to
77020fdc7489SMatthew Knepley   each label.
77030fdc7489SMatthew Knepley */
7704d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreate(DM dm, DMUniversalLabel *universal)
7705d71ae5a4SJacob Faibussowitsch {
77060fdc7489SMatthew Knepley   DMUniversalLabel ul;
77070fdc7489SMatthew Knepley   PetscBool       *active;
77080fdc7489SMatthew Knepley   PetscInt         pStart, pEnd, p, Nl, l, m;
77090fdc7489SMatthew Knepley 
77100fdc7489SMatthew Knepley   PetscFunctionBegin;
77119566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(1, &ul));
77129566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "universal", &ul->label));
77139566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(dm, &Nl));
77149566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Nl, &active));
77150fdc7489SMatthew Knepley   ul->Nl = 0;
77160fdc7489SMatthew Knepley   for (l = 0; l < Nl; ++l) {
77170fdc7489SMatthew Knepley     PetscBool   isdepth, iscelltype;
77180fdc7489SMatthew Knepley     const char *name;
77190fdc7489SMatthew Knepley 
77209566063dSJacob Faibussowitsch     PetscCall(DMGetLabelName(dm, l, &name));
77219566063dSJacob Faibussowitsch     PetscCall(PetscStrncmp(name, "depth", 6, &isdepth));
77229566063dSJacob Faibussowitsch     PetscCall(PetscStrncmp(name, "celltype", 9, &iscelltype));
77230fdc7489SMatthew Knepley     active[l] = !(isdepth || iscelltype) ? PETSC_TRUE : PETSC_FALSE;
77240fdc7489SMatthew Knepley     if (active[l]) ++ul->Nl;
77250fdc7489SMatthew Knepley   }
77269566063dSJacob Faibussowitsch   PetscCall(PetscCalloc5(ul->Nl, &ul->names, ul->Nl, &ul->indices, ul->Nl + 1, &ul->offsets, ul->Nl + 1, &ul->bits, ul->Nl, &ul->masks));
77270fdc7489SMatthew Knepley   ul->Nv = 0;
77280fdc7489SMatthew Knepley   for (l = 0, m = 0; l < Nl; ++l) {
77290fdc7489SMatthew Knepley     DMLabel     label;
77300fdc7489SMatthew Knepley     PetscInt    nv;
77310fdc7489SMatthew Knepley     const char *name;
77320fdc7489SMatthew Knepley 
77330fdc7489SMatthew Knepley     if (!active[l]) continue;
77349566063dSJacob Faibussowitsch     PetscCall(DMGetLabelName(dm, l, &name));
77359566063dSJacob Faibussowitsch     PetscCall(DMGetLabelByNum(dm, l, &label));
77369566063dSJacob Faibussowitsch     PetscCall(DMLabelGetNumValues(label, &nv));
77379566063dSJacob Faibussowitsch     PetscCall(PetscStrallocpy(name, &ul->names[m]));
77380fdc7489SMatthew Knepley     ul->indices[m] = l;
77390fdc7489SMatthew Knepley     ul->Nv += nv;
77400fdc7489SMatthew Knepley     ul->offsets[m + 1] = nv;
77410fdc7489SMatthew Knepley     ul->bits[m + 1]    = PetscCeilReal(PetscLog2Real(nv + 1));
77420fdc7489SMatthew Knepley     ++m;
77430fdc7489SMatthew Knepley   }
77440fdc7489SMatthew Knepley   for (l = 1; l <= ul->Nl; ++l) {
77450fdc7489SMatthew Knepley     ul->offsets[l] = ul->offsets[l - 1] + ul->offsets[l];
77460fdc7489SMatthew Knepley     ul->bits[l]    = ul->bits[l - 1] + ul->bits[l];
77470fdc7489SMatthew Knepley   }
77480fdc7489SMatthew Knepley   for (l = 0; l < ul->Nl; ++l) {
77490fdc7489SMatthew Knepley     PetscInt b;
77500fdc7489SMatthew Knepley 
77510fdc7489SMatthew Knepley     ul->masks[l] = 0;
77520fdc7489SMatthew Knepley     for (b = ul->bits[l]; b < ul->bits[l + 1]; ++b) ul->masks[l] |= 1 << b;
77530fdc7489SMatthew Knepley   }
77549566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ul->Nv, &ul->values));
77550fdc7489SMatthew Knepley   for (l = 0, m = 0; l < Nl; ++l) {
77560fdc7489SMatthew Knepley     DMLabel         label;
77570fdc7489SMatthew Knepley     IS              valueIS;
77580fdc7489SMatthew Knepley     const PetscInt *varr;
77590fdc7489SMatthew Knepley     PetscInt        nv, v;
77600fdc7489SMatthew Knepley 
77610fdc7489SMatthew Knepley     if (!active[l]) continue;
77629566063dSJacob Faibussowitsch     PetscCall(DMGetLabelByNum(dm, l, &label));
77639566063dSJacob Faibussowitsch     PetscCall(DMLabelGetNumValues(label, &nv));
77649566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValueIS(label, &valueIS));
77659566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(valueIS, &varr));
7766ad540459SPierre Jolivet     for (v = 0; v < nv; ++v) ul->values[ul->offsets[m] + v] = varr[v];
77679566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(valueIS, &varr));
77689566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&valueIS));
77699566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(nv, &ul->values[ul->offsets[m]]));
77700fdc7489SMatthew Knepley     ++m;
77710fdc7489SMatthew Knepley   }
77729566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
77730fdc7489SMatthew Knepley   for (p = pStart; p < pEnd; ++p) {
77740fdc7489SMatthew Knepley     PetscInt  uval   = 0;
77750fdc7489SMatthew Knepley     PetscBool marked = PETSC_FALSE;
77760fdc7489SMatthew Knepley 
77770fdc7489SMatthew Knepley     for (l = 0, m = 0; l < Nl; ++l) {
77780fdc7489SMatthew Knepley       DMLabel  label;
77790649b39aSStefano Zampini       PetscInt val, defval, loc, nv;
77800fdc7489SMatthew Knepley 
77810fdc7489SMatthew Knepley       if (!active[l]) continue;
77829566063dSJacob Faibussowitsch       PetscCall(DMGetLabelByNum(dm, l, &label));
77839566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(label, p, &val));
77849566063dSJacob Faibussowitsch       PetscCall(DMLabelGetDefaultValue(label, &defval));
77859371c9d4SSatish Balay       if (val == defval) {
77869371c9d4SSatish Balay         ++m;
77879371c9d4SSatish Balay         continue;
77889371c9d4SSatish Balay       }
77890649b39aSStefano Zampini       nv     = ul->offsets[m + 1] - ul->offsets[m];
77900fdc7489SMatthew Knepley       marked = PETSC_TRUE;
77919566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(val, nv, &ul->values[ul->offsets[m]], &loc));
779263a3b9bcSJacob Faibussowitsch       PetscCheck(loc >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Label value %" PetscInt_FMT " not found in compression array", val);
77930fdc7489SMatthew Knepley       uval += (loc + 1) << ul->bits[m];
77940fdc7489SMatthew Knepley       ++m;
77950fdc7489SMatthew Knepley     }
77969566063dSJacob Faibussowitsch     if (marked) PetscCall(DMLabelSetValue(ul->label, p, uval));
77970fdc7489SMatthew Knepley   }
77989566063dSJacob Faibussowitsch   PetscCall(PetscFree(active));
77990fdc7489SMatthew Knepley   *universal = ul;
78003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
78010fdc7489SMatthew Knepley }
78020fdc7489SMatthew Knepley 
7803d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelDestroy(DMUniversalLabel *universal)
7804d71ae5a4SJacob Faibussowitsch {
78050fdc7489SMatthew Knepley   PetscInt l;
78060fdc7489SMatthew Knepley 
78070fdc7489SMatthew Knepley   PetscFunctionBegin;
78089566063dSJacob Faibussowitsch   for (l = 0; l < (*universal)->Nl; ++l) PetscCall(PetscFree((*universal)->names[l]));
78099566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&(*universal)->label));
78109566063dSJacob Faibussowitsch   PetscCall(PetscFree5((*universal)->names, (*universal)->indices, (*universal)->offsets, (*universal)->bits, (*universal)->masks));
78119566063dSJacob Faibussowitsch   PetscCall(PetscFree((*universal)->values));
78129566063dSJacob Faibussowitsch   PetscCall(PetscFree(*universal));
78130fdc7489SMatthew Knepley   *universal = NULL;
78143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
78150fdc7489SMatthew Knepley }
78160fdc7489SMatthew Knepley 
7817d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelGetLabel(DMUniversalLabel ul, DMLabel *ulabel)
7818d71ae5a4SJacob Faibussowitsch {
78190fdc7489SMatthew Knepley   PetscFunctionBegin;
78204f572ea9SToby Isaac   PetscAssertPointer(ulabel, 2);
78210fdc7489SMatthew Knepley   *ulabel = ul->label;
78223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
78230fdc7489SMatthew Knepley }
78240fdc7489SMatthew Knepley 
7825d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreateLabels(DMUniversalLabel ul, PetscBool preserveOrder, DM dm)
7826d71ae5a4SJacob Faibussowitsch {
78270fdc7489SMatthew Knepley   PetscInt Nl = ul->Nl, l;
78280fdc7489SMatthew Knepley 
78290fdc7489SMatthew Knepley   PetscFunctionBegin;
7830064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(dm, DM_CLASSID, 3);
78310fdc7489SMatthew Knepley   for (l = 0; l < Nl; ++l) {
78329566063dSJacob Faibussowitsch     if (preserveOrder) PetscCall(DMCreateLabelAtIndex(dm, ul->indices[l], ul->names[l]));
78339566063dSJacob Faibussowitsch     else PetscCall(DMCreateLabel(dm, ul->names[l]));
78340fdc7489SMatthew Knepley   }
78350fdc7489SMatthew Knepley   if (preserveOrder) {
78360fdc7489SMatthew Knepley     for (l = 0; l < ul->Nl; ++l) {
78370fdc7489SMatthew Knepley       const char *name;
78380fdc7489SMatthew Knepley       PetscBool   match;
78390fdc7489SMatthew Knepley 
78409566063dSJacob Faibussowitsch       PetscCall(DMGetLabelName(dm, ul->indices[l], &name));
78419566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, ul->names[l], &match));
784263a3b9bcSJacob Faibussowitsch       PetscCheck(match, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Label %" PetscInt_FMT " name %s does not match new name %s", l, name, ul->names[l]);
78430fdc7489SMatthew Knepley     }
78440fdc7489SMatthew Knepley   }
78453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
78460fdc7489SMatthew Knepley }
78470fdc7489SMatthew Knepley 
7848d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelSetLabelValue(DMUniversalLabel ul, DM dm, PetscBool useIndex, PetscInt p, PetscInt value)
7849d71ae5a4SJacob Faibussowitsch {
78500fdc7489SMatthew Knepley   PetscInt l;
78510fdc7489SMatthew Knepley 
78520fdc7489SMatthew Knepley   PetscFunctionBegin;
78530fdc7489SMatthew Knepley   for (l = 0; l < ul->Nl; ++l) {
78540fdc7489SMatthew Knepley     DMLabel  label;
78550fdc7489SMatthew Knepley     PetscInt lval = (value & ul->masks[l]) >> ul->bits[l];
78560fdc7489SMatthew Knepley 
78570fdc7489SMatthew Knepley     if (lval) {
78589566063dSJacob Faibussowitsch       if (useIndex) PetscCall(DMGetLabelByNum(dm, ul->indices[l], &label));
78599566063dSJacob Faibussowitsch       else PetscCall(DMGetLabel(dm, ul->names[l], &label));
78609566063dSJacob Faibussowitsch       PetscCall(DMLabelSetValue(label, p, ul->values[ul->offsets[l] + lval - 1]));
78610fdc7489SMatthew Knepley     }
78620fdc7489SMatthew Knepley   }
78633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
78640fdc7489SMatthew Knepley }
7865a8fb8f29SToby Isaac 
7866a8fb8f29SToby Isaac /*@
7867bb7acecfSBarry Smith   DMGetCoarseDM - Get the coarse `DM`from which this `DM` was obtained by refinement
7868bb7acecfSBarry Smith 
786920f4b53cSBarry Smith   Not Collective
7870a8fb8f29SToby Isaac 
7871a8fb8f29SToby Isaac   Input Parameter:
7872bb7acecfSBarry Smith . dm - The `DM` object
7873a8fb8f29SToby Isaac 
7874a8fb8f29SToby Isaac   Output Parameter:
7875bb7acecfSBarry Smith . cdm - The coarse `DM`
7876a8fb8f29SToby Isaac 
7877a8fb8f29SToby Isaac   Level: intermediate
7878a8fb8f29SToby Isaac 
78791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetCoarseDM()`, `DMCoarsen()`
7880a8fb8f29SToby Isaac @*/
7881d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarseDM(DM dm, DM *cdm)
7882d71ae5a4SJacob Faibussowitsch {
7883a8fb8f29SToby Isaac   PetscFunctionBegin;
7884a8fb8f29SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
78854f572ea9SToby Isaac   PetscAssertPointer(cdm, 2);
7886a8fb8f29SToby Isaac   *cdm = dm->coarseMesh;
78873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7888a8fb8f29SToby Isaac }
7889a8fb8f29SToby Isaac 
7890a8fb8f29SToby Isaac /*@
7891bb7acecfSBarry Smith   DMSetCoarseDM - Set the coarse `DM` from which this `DM` was obtained by refinement
7892a8fb8f29SToby Isaac 
7893a8fb8f29SToby Isaac   Input Parameters:
7894bb7acecfSBarry Smith + dm  - The `DM` object
7895bb7acecfSBarry Smith - cdm - The coarse `DM`
7896a8fb8f29SToby Isaac 
7897a8fb8f29SToby Isaac   Level: intermediate
7898a8fb8f29SToby Isaac 
7899bb7acecfSBarry Smith   Note:
7900bb7acecfSBarry Smith   Normally this is set automatically by `DMRefine()`
7901bb7acecfSBarry Smith 
79021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCoarseDM()`, `DMCoarsen()`, `DMSetRefine()`, `DMSetFineDM()`
7903a8fb8f29SToby Isaac @*/
7904d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarseDM(DM dm, DM cdm)
7905d71ae5a4SJacob Faibussowitsch {
7906a8fb8f29SToby Isaac   PetscFunctionBegin;
7907a8fb8f29SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7908a8fb8f29SToby Isaac   if (cdm) PetscValidHeaderSpecific(cdm, DM_CLASSID, 2);
790989d734beSBarry Smith   if (dm == cdm) cdm = NULL;
79109566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)cdm));
79119566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dm->coarseMesh));
7912a8fb8f29SToby Isaac   dm->coarseMesh = cdm;
79133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7914a8fb8f29SToby Isaac }
7915a8fb8f29SToby Isaac 
791688bdff64SToby Isaac /*@
7917bb7acecfSBarry Smith   DMGetFineDM - Get the fine mesh from which this `DM` was obtained by coarsening
791888bdff64SToby Isaac 
791988bdff64SToby Isaac   Input Parameter:
7920bb7acecfSBarry Smith . dm - The `DM` object
792188bdff64SToby Isaac 
792288bdff64SToby Isaac   Output Parameter:
7923bb7acecfSBarry Smith . fdm - The fine `DM`
792488bdff64SToby Isaac 
792588bdff64SToby Isaac   Level: intermediate
792688bdff64SToby Isaac 
79271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetFineDM()`, `DMCoarsen()`, `DMRefine()`
792888bdff64SToby Isaac @*/
7929d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFineDM(DM dm, DM *fdm)
7930d71ae5a4SJacob Faibussowitsch {
793188bdff64SToby Isaac   PetscFunctionBegin;
793288bdff64SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
79334f572ea9SToby Isaac   PetscAssertPointer(fdm, 2);
793488bdff64SToby Isaac   *fdm = dm->fineMesh;
79353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
793688bdff64SToby Isaac }
793788bdff64SToby Isaac 
793888bdff64SToby Isaac /*@
7939bb7acecfSBarry Smith   DMSetFineDM - Set the fine mesh from which this was obtained by coarsening
794088bdff64SToby Isaac 
794188bdff64SToby Isaac   Input Parameters:
7942bb7acecfSBarry Smith + dm  - The `DM` object
7943bb7acecfSBarry Smith - fdm - The fine `DM`
794488bdff64SToby Isaac 
7945bb7acecfSBarry Smith   Level: developer
794688bdff64SToby Isaac 
7947bb7acecfSBarry Smith   Note:
7948bb7acecfSBarry Smith   Normally this is set automatically by `DMCoarsen()`
7949bb7acecfSBarry Smith 
79501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFineDM()`, `DMCoarsen()`, `DMRefine()`
795188bdff64SToby Isaac @*/
7952d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFineDM(DM dm, DM fdm)
7953d71ae5a4SJacob Faibussowitsch {
795488bdff64SToby Isaac   PetscFunctionBegin;
795588bdff64SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
795688bdff64SToby Isaac   if (fdm) PetscValidHeaderSpecific(fdm, DM_CLASSID, 2);
795789d734beSBarry Smith   if (dm == fdm) fdm = NULL;
79589566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)fdm));
79599566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dm->fineMesh));
796088bdff64SToby Isaac   dm->fineMesh = fdm;
79613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
796288bdff64SToby Isaac }
796388bdff64SToby Isaac 
7964a6ba4734SToby Isaac /*@C
7965bb7acecfSBarry Smith   DMAddBoundary - Add a boundary condition to a model represented by a `DM`
7966a6ba4734SToby Isaac 
796720f4b53cSBarry Smith   Collective
7968783e2ec8SMatthew G. Knepley 
7969a6ba4734SToby Isaac   Input Parameters:
7970bb7acecfSBarry Smith + dm       - The `DM`, with a `PetscDS` that matches the problem being constrained
7971bb7acecfSBarry Smith . type     - The type of condition, e.g. `DM_BC_ESSENTIAL_ANALYTIC`, `DM_BC_ESSENTIAL_FIELD` (Dirichlet), or `DM_BC_NATURAL` (Neumann)
7972a6ba4734SToby Isaac . name     - The BC name
797345480ffeSMatthew G. Knepley . label    - The label defining constrained points
7974bb7acecfSBarry Smith . Nv       - The number of `DMLabel` values for constrained points
797545480ffeSMatthew G. Knepley . values   - An array of values for constrained points
7976a6ba4734SToby Isaac . field    - The field to constrain
7977258f4e96SStefano Zampini . Nc       - The number of constrained field components (0 will constrain all components)
7978a6ba4734SToby Isaac . comps    - An array of constrained component numbers
7979a6ba4734SToby Isaac . bcFunc   - A pointwise function giving boundary values
798056cf3b9cSMatthew G. Knepley . bcFunc_t - A pointwise function giving the time deriative of the boundary values, or NULL
7981a6ba4734SToby Isaac - ctx      - An optional user context for bcFunc
7982a6ba4734SToby Isaac 
798345480ffeSMatthew G. Knepley   Output Parameter:
798445480ffeSMatthew G. Knepley . bd - (Optional) Boundary number
798545480ffeSMatthew G. Knepley 
7986a6ba4734SToby Isaac   Options Database Keys:
7987a6ba4734SToby Isaac + -bc_<boundary name> <num>      - Overrides the boundary ids
7988a6ba4734SToby Isaac - -bc_<boundary name>_comp <num> - Overrides the boundary components
7989a6ba4734SToby Isaac 
799020f4b53cSBarry Smith   Level: intermediate
799120f4b53cSBarry Smith 
7992bb7acecfSBarry Smith   Notes:
7993fa74d514SMatthew G. Knepley   If the `DM` is of type `DMPLEX` and the field is of type `PetscFE`, then this function completes the label using `DMPlexLabelComplete()`.
7994fa74d514SMatthew G. Knepley 
7995aeebefc2SPierre Jolivet   Both bcFunc and bcFunc_t will depend on the boundary condition type. If the type if `DM_BC_ESSENTIAL`, then the calling sequence is\:
799673ff1848SBarry Smith .vb
799773ff1848SBarry Smith  void bcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[])
799873ff1848SBarry Smith .ve
799956cf3b9cSMatthew G. Knepley 
8000a4e35b19SJacob Faibussowitsch   If the type is `DM_BC_ESSENTIAL_FIELD` or other _FIELD value, then the calling sequence is\:
800156cf3b9cSMatthew G. Knepley 
800220f4b53cSBarry Smith .vb
800320f4b53cSBarry Smith   void bcFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux,
800420f4b53cSBarry Smith               const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
800520f4b53cSBarry Smith               const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
800620f4b53cSBarry Smith               PetscReal time, const PetscReal x[], PetscScalar bcval[])
800720f4b53cSBarry Smith .ve
800856cf3b9cSMatthew G. Knepley + dim - the spatial dimension
800956cf3b9cSMatthew G. Knepley . Nf - the number of fields
801056cf3b9cSMatthew G. Knepley . uOff - the offset into u[] and u_t[] for each field
801156cf3b9cSMatthew G. Knepley . uOff_x - the offset into u_x[] for each field
801256cf3b9cSMatthew G. Knepley . u - each field evaluated at the current point
801356cf3b9cSMatthew G. Knepley . u_t - the time derivative of each field evaluated at the current point
801456cf3b9cSMatthew G. Knepley . u_x - the gradient of each field evaluated at the current point
801556cf3b9cSMatthew G. Knepley . aOff - the offset into a[] and a_t[] for each auxiliary field
801656cf3b9cSMatthew G. Knepley . aOff_x - the offset into a_x[] for each auxiliary field
801756cf3b9cSMatthew G. Knepley . a - each auxiliary field evaluated at the current point
801856cf3b9cSMatthew G. Knepley . a_t - the time derivative of each auxiliary field evaluated at the current point
801956cf3b9cSMatthew G. Knepley . a_x - the gradient of auxiliary each field evaluated at the current point
802056cf3b9cSMatthew G. Knepley . t - current time
802156cf3b9cSMatthew G. Knepley . x - coordinates of the current point
802256cf3b9cSMatthew G. Knepley . numConstants - number of constant parameters
802356cf3b9cSMatthew G. Knepley . constants - constant parameters
802456cf3b9cSMatthew G. Knepley - bcval - output values at the current point
802556cf3b9cSMatthew G. Knepley 
80261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DSGetBoundary()`, `PetscDSAddBoundary()`
8027a6ba4734SToby Isaac @*/
8028d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddBoundary(DM dm, DMBoundaryConditionType type, const char name[], DMLabel label, PetscInt Nv, const PetscInt values[], PetscInt field, PetscInt Nc, const PetscInt comps[], void (*bcFunc)(void), void (*bcFunc_t)(void), void *ctx, PetscInt *bd)
8029d71ae5a4SJacob Faibussowitsch {
8030e5e52638SMatthew G. Knepley   PetscDS ds;
8031a6ba4734SToby Isaac 
8032a6ba4734SToby Isaac   PetscFunctionBegin;
8033a6ba4734SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8034783e2ec8SMatthew G. Knepley   PetscValidLogicalCollectiveEnum(dm, type, 2);
803545480ffeSMatthew G. Knepley   PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 4);
803645480ffeSMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, Nv, 5);
803745480ffeSMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, field, 7);
803845480ffeSMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, Nc, 8);
803901a5d20dSJed Brown   PetscCheck(!dm->localSection, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot add boundary to DM after creating local section");
80409566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &ds));
8041799db056SMatthew G. Knepley   /* Complete label */
8042799db056SMatthew G. Knepley   if (label) {
8043799db056SMatthew G. Knepley     PetscObject  obj;
8044799db056SMatthew G. Knepley     PetscClassId id;
8045799db056SMatthew G. Knepley 
8046799db056SMatthew G. Knepley     PetscCall(DMGetField(dm, field, NULL, &obj));
8047799db056SMatthew G. Knepley     PetscCall(PetscObjectGetClassId(obj, &id));
8048799db056SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
8049799db056SMatthew G. Knepley       DM plex;
8050799db056SMatthew G. Knepley 
8051799db056SMatthew G. Knepley       PetscCall(DMConvert(dm, DMPLEX, &plex));
8052799db056SMatthew G. Knepley       if (plex) PetscCall(DMPlexLabelComplete(plex, label));
8053799db056SMatthew G. Knepley       PetscCall(DMDestroy(&plex));
8054799db056SMatthew G. Knepley     }
8055799db056SMatthew G. Knepley   }
80569566063dSJacob Faibussowitsch   PetscCall(PetscDSAddBoundary(ds, type, name, label, Nv, values, field, Nc, comps, bcFunc, bcFunc_t, ctx, bd));
80573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8058a6ba4734SToby Isaac }
8059a6ba4734SToby Isaac 
806045480ffeSMatthew G. Knepley /* TODO Remove this since now the structures are the same */
8061d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPopulateBoundary(DM dm)
8062d71ae5a4SJacob Faibussowitsch {
8063e5e52638SMatthew G. Knepley   PetscDS     ds;
8064dff059c6SToby Isaac   DMBoundary *lastnext;
8065e6f8dbb6SToby Isaac   DSBoundary  dsbound;
8066e6f8dbb6SToby Isaac 
8067e6f8dbb6SToby Isaac   PetscFunctionBegin;
80689566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &ds));
8069e5e52638SMatthew G. Knepley   dsbound = ds->boundary;
807047a1f5adSToby Isaac   if (dm->boundary) {
807147a1f5adSToby Isaac     DMBoundary next = dm->boundary;
807247a1f5adSToby Isaac 
807347a1f5adSToby Isaac     /* quick check to see if the PetscDS has changed */
80743ba16761SJacob Faibussowitsch     if (next->dsboundary == dsbound) PetscFunctionReturn(PETSC_SUCCESS);
807547a1f5adSToby Isaac     /* the PetscDS has changed: tear down and rebuild */
807647a1f5adSToby Isaac     while (next) {
807747a1f5adSToby Isaac       DMBoundary b = next;
807847a1f5adSToby Isaac 
807947a1f5adSToby Isaac       next = b->next;
80809566063dSJacob Faibussowitsch       PetscCall(PetscFree(b));
8081a6ba4734SToby Isaac     }
808247a1f5adSToby Isaac     dm->boundary = NULL;
8083a6ba4734SToby Isaac   }
808447a1f5adSToby Isaac 
8085f4f49eeaSPierre Jolivet   lastnext = &dm->boundary;
8086e6f8dbb6SToby Isaac   while (dsbound) {
8087e6f8dbb6SToby Isaac     DMBoundary dmbound;
8088e6f8dbb6SToby Isaac 
80899566063dSJacob Faibussowitsch     PetscCall(PetscNew(&dmbound));
8090e6f8dbb6SToby Isaac     dmbound->dsboundary = dsbound;
809145480ffeSMatthew G. Knepley     dmbound->label      = dsbound->label;
809247a1f5adSToby Isaac     /* push on the back instead of the front so that it is in the same order as in the PetscDS */
8093dff059c6SToby Isaac     *lastnext = dmbound;
8094f4f49eeaSPierre Jolivet     lastnext  = &dmbound->next;
8095dff059c6SToby Isaac     dsbound   = dsbound->next;
8096a6ba4734SToby Isaac   }
80973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8098a6ba4734SToby Isaac }
8099a6ba4734SToby Isaac 
8100bb7acecfSBarry Smith /* TODO: missing manual page */
8101d71ae5a4SJacob Faibussowitsch PetscErrorCode DMIsBoundaryPoint(DM dm, PetscInt point, PetscBool *isBd)
8102d71ae5a4SJacob Faibussowitsch {
8103b95f2879SToby Isaac   DMBoundary b;
8104a6ba4734SToby Isaac 
8105a6ba4734SToby Isaac   PetscFunctionBegin;
8106a6ba4734SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
81074f572ea9SToby Isaac   PetscAssertPointer(isBd, 3);
8108a6ba4734SToby Isaac   *isBd = PETSC_FALSE;
81099566063dSJacob Faibussowitsch   PetscCall(DMPopulateBoundary(dm));
8110b95f2879SToby Isaac   b = dm->boundary;
811157508eceSPierre Jolivet   while (b && !*isBd) {
8112e6f8dbb6SToby Isaac     DMLabel    label = b->label;
8113e6f8dbb6SToby Isaac     DSBoundary dsb   = b->dsboundary;
8114a6ba4734SToby Isaac     PetscInt   i;
8115a6ba4734SToby Isaac 
811645480ffeSMatthew G. Knepley     if (label) {
811757508eceSPierre Jolivet       for (i = 0; i < dsb->Nv && !*isBd; ++i) PetscCall(DMLabelStratumHasPoint(label, dsb->values[i], point, isBd));
8118a6ba4734SToby Isaac     }
8119a6ba4734SToby Isaac     b = b->next;
8120a6ba4734SToby Isaac   }
81213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8122a6ba4734SToby Isaac }
81234d6f44ffSToby Isaac 
81244d6f44ffSToby Isaac /*@C
8125bb7acecfSBarry Smith   DMProjectFunction - This projects the given function into the function space provided by a `DM`, putting the coefficients in a global vector.
8126a6e0b375SMatthew G. Knepley 
812720f4b53cSBarry Smith   Collective
81284d6f44ffSToby Isaac 
81294d6f44ffSToby Isaac   Input Parameters:
8130bb7acecfSBarry Smith + dm    - The `DM`
81310709b2feSToby Isaac . time  - The time
81324d6f44ffSToby Isaac . funcs - The coordinate functions to evaluate, one per field
81334d6f44ffSToby Isaac . ctxs  - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
81344d6f44ffSToby Isaac - mode  - The insertion mode for values
81354d6f44ffSToby Isaac 
81364d6f44ffSToby Isaac   Output Parameter:
81374d6f44ffSToby Isaac . X - vector
81384d6f44ffSToby Isaac 
813920f4b53cSBarry Smith   Calling sequence of `funcs`:
81404d6f44ffSToby Isaac + dim  - The spatial dimension
81418ec8862eSJed Brown . time - The time at which to sample
81424d6f44ffSToby Isaac . x    - The coordinates
814377b739a6SMatthew Knepley . Nc   - The number of components
81444d6f44ffSToby Isaac . u    - The output field values
81454d6f44ffSToby Isaac - ctx  - optional user-defined function context
81464d6f44ffSToby Isaac 
81474d6f44ffSToby Isaac   Level: developer
81484d6f44ffSToby Isaac 
8149bb7acecfSBarry Smith   Developer Notes:
8150bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8151bb7acecfSBarry Smith 
8152bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8153bb7acecfSBarry Smith 
81541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
81554d6f44ffSToby Isaac @*/
8156a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunction(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X)
8157d71ae5a4SJacob Faibussowitsch {
81584d6f44ffSToby Isaac   Vec localX;
81594d6f44ffSToby Isaac 
81604d6f44ffSToby Isaac   PetscFunctionBegin;
81614d6f44ffSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8162708be2fdSJed Brown   PetscCall(PetscLogEventBegin(DM_ProjectFunction, dm, X, 0, 0));
81639566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
8164f60fa741SMatthew G. Knepley   PetscCall(VecSet(localX, 0.));
81659566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, mode, localX));
81669566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
81679566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
81689566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
8169708be2fdSJed Brown   PetscCall(PetscLogEventEnd(DM_ProjectFunction, dm, X, 0, 0));
81703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
81714d6f44ffSToby Isaac }
81724d6f44ffSToby Isaac 
8173a6e0b375SMatthew G. Knepley /*@C
8174bb7acecfSBarry Smith   DMProjectFunctionLocal - This projects the given function into the function space provided by a `DM`, putting the coefficients in a local vector.
8175a6e0b375SMatthew G. Knepley 
817620f4b53cSBarry Smith   Not Collective
8177a6e0b375SMatthew G. Knepley 
8178a6e0b375SMatthew G. Knepley   Input Parameters:
8179bb7acecfSBarry Smith + dm    - The `DM`
8180a6e0b375SMatthew G. Knepley . time  - The time
8181a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field
8182a6e0b375SMatthew G. Knepley . ctxs  - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
8183a6e0b375SMatthew G. Knepley - mode  - The insertion mode for values
8184a6e0b375SMatthew G. Knepley 
8185a6e0b375SMatthew G. Knepley   Output Parameter:
8186a6e0b375SMatthew G. Knepley . localX - vector
8187a6e0b375SMatthew G. Knepley 
818820f4b53cSBarry Smith   Calling sequence of `funcs`:
8189a6e0b375SMatthew G. Knepley + dim  - The spatial dimension
8190a4e35b19SJacob Faibussowitsch . time - The current timestep
8191a6e0b375SMatthew G. Knepley . x    - The coordinates
819277b739a6SMatthew Knepley . Nc   - The number of components
8193a6e0b375SMatthew G. Knepley . u    - The output field values
8194a6e0b375SMatthew G. Knepley - ctx  - optional user-defined function context
8195a6e0b375SMatthew G. Knepley 
8196a6e0b375SMatthew G. Knepley   Level: developer
8197a6e0b375SMatthew G. Knepley 
8198bb7acecfSBarry Smith   Developer Notes:
8199bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8200bb7acecfSBarry Smith 
8201bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8202bb7acecfSBarry Smith 
82031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
8204a6e0b375SMatthew G. Knepley @*/
8205a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX)
8206d71ae5a4SJacob Faibussowitsch {
82074d6f44ffSToby Isaac   PetscFunctionBegin;
82084d6f44ffSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8209064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 6);
8210fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectfunctionlocal, time, funcs, ctxs, mode, localX);
82113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
82124d6f44ffSToby Isaac }
82134d6f44ffSToby Isaac 
8214a6e0b375SMatthew G. Knepley /*@C
8215bb7acecfSBarry Smith   DMProjectFunctionLabel - This projects the given function into the function space provided by the `DM`, putting the coefficients in a global vector, setting values only for points in the given label.
8216a6e0b375SMatthew G. Knepley 
821720f4b53cSBarry Smith   Collective
8218a6e0b375SMatthew G. Knepley 
8219a6e0b375SMatthew G. Knepley   Input Parameters:
8220bb7acecfSBarry Smith + dm     - The `DM`
8221a6e0b375SMatthew G. Knepley . time   - The time
8222a4e35b19SJacob Faibussowitsch . numIds - The number of ids
8223a4e35b19SJacob Faibussowitsch . ids    - The ids
8224a4e35b19SJacob Faibussowitsch . Nc     - The number of components
8225a4e35b19SJacob Faibussowitsch . comps  - The components
8226bb7acecfSBarry Smith . label  - The `DMLabel` selecting the portion of the mesh for projection
8227a6e0b375SMatthew G. Knepley . funcs  - The coordinate functions to evaluate, one per field
8228bb7acecfSBarry Smith . ctxs   - Optional array of contexts to pass to each coordinate function.  ctxs may be null.
8229a6e0b375SMatthew G. Knepley - mode   - The insertion mode for values
8230a6e0b375SMatthew G. Knepley 
8231a6e0b375SMatthew G. Knepley   Output Parameter:
8232a6e0b375SMatthew G. Knepley . X - vector
8233a6e0b375SMatthew G. Knepley 
823420f4b53cSBarry Smith   Calling sequence of `funcs`:
8235a6e0b375SMatthew G. Knepley + dim  - The spatial dimension
8236a4e35b19SJacob Faibussowitsch . time - The current timestep
8237a6e0b375SMatthew G. Knepley . x    - The coordinates
823877b739a6SMatthew Knepley . Nc   - The number of components
8239a6e0b375SMatthew G. Knepley . u    - The output field values
8240a6e0b375SMatthew G. Knepley - ctx  - optional user-defined function context
8241a6e0b375SMatthew G. Knepley 
8242a6e0b375SMatthew G. Knepley   Level: developer
8243a6e0b375SMatthew G. Knepley 
8244bb7acecfSBarry Smith   Developer Notes:
8245bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8246bb7acecfSBarry Smith 
8247bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8248bb7acecfSBarry Smith 
82491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`, `DMComputeL2Diff()`
8250a6e0b375SMatthew G. Knepley @*/
8251a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X)
8252d71ae5a4SJacob Faibussowitsch {
82532c53366bSMatthew G. Knepley   Vec localX;
82542c53366bSMatthew G. Knepley 
82552c53366bSMatthew G. Knepley   PetscFunctionBegin;
82562c53366bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
82579566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
8258f60fa741SMatthew G. Knepley   PetscCall(VecSet(localX, 0.));
82599566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX));
82609566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
82619566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
82629566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
82633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
82642c53366bSMatthew G. Knepley }
82652c53366bSMatthew G. Knepley 
8266a6e0b375SMatthew G. Knepley /*@C
8267bb7acecfSBarry Smith   DMProjectFunctionLabelLocal - This projects the given function into the function space provided by the `DM`, putting the coefficients in a local vector, setting values only for points in the given label.
8268a6e0b375SMatthew G. Knepley 
826920f4b53cSBarry Smith   Not Collective
8270a6e0b375SMatthew G. Knepley 
8271a6e0b375SMatthew G. Knepley   Input Parameters:
8272bb7acecfSBarry Smith + dm     - The `DM`
8273a6e0b375SMatthew G. Knepley . time   - The time
8274bb7acecfSBarry Smith . label  - The `DMLabel` selecting the portion of the mesh for projection
8275a4e35b19SJacob Faibussowitsch . numIds - The number of ids
8276a4e35b19SJacob Faibussowitsch . ids    - The ids
8277a4e35b19SJacob Faibussowitsch . Nc     - The number of components
8278a4e35b19SJacob Faibussowitsch . comps  - The components
8279a6e0b375SMatthew G. Knepley . funcs  - The coordinate functions to evaluate, one per field
8280a6e0b375SMatthew G. Knepley . ctxs   - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
8281a6e0b375SMatthew G. Knepley - mode   - The insertion mode for values
8282a6e0b375SMatthew G. Knepley 
8283a6e0b375SMatthew G. Knepley   Output Parameter:
8284a6e0b375SMatthew G. Knepley . localX - vector
8285a6e0b375SMatthew G. Knepley 
828620f4b53cSBarry Smith   Calling sequence of `funcs`:
8287a6e0b375SMatthew G. Knepley + dim  - The spatial dimension
8288a4e35b19SJacob Faibussowitsch . time - The current time
8289a6e0b375SMatthew G. Knepley . x    - The coordinates
829077b739a6SMatthew Knepley . Nc   - The number of components
8291a6e0b375SMatthew G. Knepley . u    - The output field values
8292a6e0b375SMatthew G. Knepley - ctx  - optional user-defined function context
8293a6e0b375SMatthew G. Knepley 
8294a6e0b375SMatthew G. Knepley   Level: developer
8295a6e0b375SMatthew G. Knepley 
8296bb7acecfSBarry Smith   Developer Notes:
8297bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8298bb7acecfSBarry Smith 
8299bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8300bb7acecfSBarry Smith 
83011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
8302a6e0b375SMatthew G. Knepley @*/
8303a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX)
8304d71ae5a4SJacob Faibussowitsch {
83054d6f44ffSToby Isaac   PetscFunctionBegin;
83064d6f44ffSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8307064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
8308fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectfunctionlabellocal, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX);
83093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
83104d6f44ffSToby Isaac }
83112716604bSToby Isaac 
8312a6e0b375SMatthew G. Knepley /*@C
8313bb7acecfSBarry Smith   DMProjectFieldLocal - This projects the given function of the input fields into the function space provided by the `DM`, putting the coefficients in a local vector.
8314a6e0b375SMatthew G. Knepley 
831520f4b53cSBarry Smith   Not Collective
8316a6e0b375SMatthew G. Knepley 
8317a6e0b375SMatthew G. Knepley   Input Parameters:
8318bb7acecfSBarry Smith + dm     - The `DM`
8319a6e0b375SMatthew G. Knepley . time   - The time
832020f4b53cSBarry Smith . localU - The input field vector; may be `NULL` if projection is defined purely by coordinates
8321a6e0b375SMatthew G. Knepley . funcs  - The functions to evaluate, one per field
8322a6e0b375SMatthew G. Knepley - mode   - The insertion mode for values
8323a6e0b375SMatthew G. Knepley 
8324a6e0b375SMatthew G. Knepley   Output Parameter:
8325a6e0b375SMatthew G. Knepley . localX - The output vector
8326a6e0b375SMatthew G. Knepley 
832720f4b53cSBarry Smith   Calling sequence of `funcs`:
8328a6e0b375SMatthew G. Knepley + dim          - The spatial dimension
8329a6e0b375SMatthew G. Knepley . Nf           - The number of input fields
8330a6e0b375SMatthew G. Knepley . NfAux        - The number of input auxiliary fields
8331a6e0b375SMatthew G. Knepley . uOff         - The offset of each field in u[]
8332a6e0b375SMatthew G. Knepley . uOff_x       - The offset of each field in u_x[]
8333a6e0b375SMatthew G. Knepley . u            - The field values at this point in space
8334a6e0b375SMatthew G. Knepley . u_t          - The field time derivative at this point in space (or NULL)
8335a6e0b375SMatthew G. Knepley . u_x          - The field derivatives at this point in space
8336a6e0b375SMatthew G. Knepley . aOff         - The offset of each auxiliary field in u[]
8337a6e0b375SMatthew G. Knepley . aOff_x       - The offset of each auxiliary field in u_x[]
8338a6e0b375SMatthew G. Knepley . a            - The auxiliary field values at this point in space
8339a6e0b375SMatthew G. Knepley . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8340a6e0b375SMatthew G. Knepley . a_x          - The auxiliary field derivatives at this point in space
8341a6e0b375SMatthew G. Knepley . t            - The current time
8342a6e0b375SMatthew G. Knepley . x            - The coordinates of this point
8343a6e0b375SMatthew G. Knepley . numConstants - The number of constants
8344a6e0b375SMatthew G. Knepley . constants    - The value of each constant
8345a6e0b375SMatthew G. Knepley - f            - The value of the function at this point in space
8346a6e0b375SMatthew G. Knepley 
834773ff1848SBarry Smith   Level: intermediate
834873ff1848SBarry Smith 
8349bb7acecfSBarry Smith   Note:
8350bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8351bb7acecfSBarry Smith   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8352bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8353a6e0b375SMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8354a6e0b375SMatthew G. Knepley 
8355bb7acecfSBarry Smith   Developer Notes:
8356bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8357bb7acecfSBarry Smith 
8358bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8359bb7acecfSBarry Smith 
8360a4e35b19SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`,
8361a4e35b19SJacob Faibussowitsch `DMProjectFunction()`, `DMComputeL2Diff()`
8362a6e0b375SMatthew G. Knepley @*/
8363a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLocal(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX)
8364d71ae5a4SJacob Faibussowitsch {
83658c6c5593SMatthew G. Knepley   PetscFunctionBegin;
83668c6c5593SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8367eb8f539aSJed Brown   if (localU) PetscValidHeaderSpecific(localU, VEC_CLASSID, 3);
83688c6c5593SMatthew G. Knepley   PetscValidHeaderSpecific(localX, VEC_CLASSID, 6);
8369fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectfieldlocal, time, localU, funcs, mode, localX);
83703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
83718c6c5593SMatthew G. Knepley }
83728c6c5593SMatthew G. Knepley 
8373a6e0b375SMatthew G. Knepley /*@C
8374a6e0b375SMatthew G. Knepley   DMProjectFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain specified by the label.
8375a6e0b375SMatthew G. Knepley 
837620f4b53cSBarry Smith   Not Collective
8377a6e0b375SMatthew G. Knepley 
8378a6e0b375SMatthew G. Knepley   Input Parameters:
8379bb7acecfSBarry Smith + dm     - The `DM`
8380a6e0b375SMatthew G. Knepley . time   - The time
8381bb7acecfSBarry Smith . label  - The `DMLabel` marking the portion of the domain to output
8382a6e0b375SMatthew G. Knepley . numIds - The number of label ids to use
8383a6e0b375SMatthew G. Knepley . ids    - The label ids to use for marking
8384bb7acecfSBarry Smith . Nc     - The number of components to set in the output, or `PETSC_DETERMINE` for all components
838520f4b53cSBarry Smith . comps  - The components to set in the output, or `NULL` for all components
8386a6e0b375SMatthew G. Knepley . localU - The input field vector
8387a6e0b375SMatthew G. Knepley . funcs  - The functions to evaluate, one per field
8388a6e0b375SMatthew G. Knepley - mode   - The insertion mode for values
8389a6e0b375SMatthew G. Knepley 
8390a6e0b375SMatthew G. Knepley   Output Parameter:
8391a6e0b375SMatthew G. Knepley . localX - The output vector
8392a6e0b375SMatthew G. Knepley 
839320f4b53cSBarry Smith   Calling sequence of `funcs`:
8394a6e0b375SMatthew G. Knepley + dim          - The spatial dimension
8395a6e0b375SMatthew G. Knepley . Nf           - The number of input fields
8396a6e0b375SMatthew G. Knepley . NfAux        - The number of input auxiliary fields
8397a6e0b375SMatthew G. Knepley . uOff         - The offset of each field in u[]
8398a6e0b375SMatthew G. Knepley . uOff_x       - The offset of each field in u_x[]
8399a6e0b375SMatthew G. Knepley . u            - The field values at this point in space
8400a6e0b375SMatthew G. Knepley . u_t          - The field time derivative at this point in space (or NULL)
8401a6e0b375SMatthew G. Knepley . u_x          - The field derivatives at this point in space
8402a6e0b375SMatthew G. Knepley . aOff         - The offset of each auxiliary field in u[]
8403a6e0b375SMatthew G. Knepley . aOff_x       - The offset of each auxiliary field in u_x[]
8404a6e0b375SMatthew G. Knepley . a            - The auxiliary field values at this point in space
8405a6e0b375SMatthew G. Knepley . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8406a6e0b375SMatthew G. Knepley . a_x          - The auxiliary field derivatives at this point in space
8407a6e0b375SMatthew G. Knepley . t            - The current time
8408a6e0b375SMatthew G. Knepley . x            - The coordinates of this point
8409a6e0b375SMatthew G. Knepley . numConstants - The number of constants
8410a6e0b375SMatthew G. Knepley . constants    - The value of each constant
8411a6e0b375SMatthew G. Knepley - f            - The value of the function at this point in space
8412a6e0b375SMatthew G. Knepley 
841373ff1848SBarry Smith   Level: intermediate
841473ff1848SBarry Smith 
8415bb7acecfSBarry Smith   Note:
8416bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8417bb7acecfSBarry Smith   The input `DM`, attached to localU, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8418bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8419a6e0b375SMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8420a6e0b375SMatthew G. Knepley 
8421bb7acecfSBarry Smith   Developer Notes:
8422bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8423bb7acecfSBarry Smith 
8424bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8425bb7acecfSBarry Smith 
84261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabel()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8427a6e0b375SMatthew G. Knepley @*/
8428a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX)
8429d71ae5a4SJacob Faibussowitsch {
84308c6c5593SMatthew G. Knepley   PetscFunctionBegin;
84318c6c5593SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8432064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localU, VEC_CLASSID, 8);
8433064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
8434fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX);
84353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
84368c6c5593SMatthew G. Knepley }
84378c6c5593SMatthew G. Knepley 
84382716604bSToby Isaac /*@C
8439d29d7c6eSMatthew G. Knepley   DMProjectFieldLabel - This projects the given function of the input fields into the function space provided, putting the coefficients in a global vector, calculating only over the portion of the domain specified by the label.
8440d29d7c6eSMatthew G. Knepley 
844120f4b53cSBarry Smith   Not Collective
8442d29d7c6eSMatthew G. Knepley 
8443d29d7c6eSMatthew G. Knepley   Input Parameters:
8444bb7acecfSBarry Smith + dm     - The `DM`
8445d29d7c6eSMatthew G. Knepley . time   - The time
8446bb7acecfSBarry Smith . label  - The `DMLabel` marking the portion of the domain to output
8447d29d7c6eSMatthew G. Knepley . numIds - The number of label ids to use
8448d29d7c6eSMatthew G. Knepley . ids    - The label ids to use for marking
8449bb7acecfSBarry Smith . Nc     - The number of components to set in the output, or `PETSC_DETERMINE` for all components
845020f4b53cSBarry Smith . comps  - The components to set in the output, or `NULL` for all components
8451d29d7c6eSMatthew G. Knepley . U      - The input field vector
8452d29d7c6eSMatthew G. Knepley . funcs  - The functions to evaluate, one per field
8453d29d7c6eSMatthew G. Knepley - mode   - The insertion mode for values
8454d29d7c6eSMatthew G. Knepley 
8455d29d7c6eSMatthew G. Knepley   Output Parameter:
8456d29d7c6eSMatthew G. Knepley . X - The output vector
8457d29d7c6eSMatthew G. Knepley 
845820f4b53cSBarry Smith   Calling sequence of `funcs`:
8459d29d7c6eSMatthew G. Knepley + dim          - The spatial dimension
8460d29d7c6eSMatthew G. Knepley . Nf           - The number of input fields
8461d29d7c6eSMatthew G. Knepley . NfAux        - The number of input auxiliary fields
8462d29d7c6eSMatthew G. Knepley . uOff         - The offset of each field in u[]
8463d29d7c6eSMatthew G. Knepley . uOff_x       - The offset of each field in u_x[]
8464d29d7c6eSMatthew G. Knepley . u            - The field values at this point in space
8465d29d7c6eSMatthew G. Knepley . u_t          - The field time derivative at this point in space (or NULL)
8466d29d7c6eSMatthew G. Knepley . u_x          - The field derivatives at this point in space
8467d29d7c6eSMatthew G. Knepley . aOff         - The offset of each auxiliary field in u[]
8468d29d7c6eSMatthew G. Knepley . aOff_x       - The offset of each auxiliary field in u_x[]
8469d29d7c6eSMatthew G. Knepley . a            - The auxiliary field values at this point in space
8470d29d7c6eSMatthew G. Knepley . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8471d29d7c6eSMatthew G. Knepley . a_x          - The auxiliary field derivatives at this point in space
8472d29d7c6eSMatthew G. Knepley . t            - The current time
8473d29d7c6eSMatthew G. Knepley . x            - The coordinates of this point
8474d29d7c6eSMatthew G. Knepley . numConstants - The number of constants
8475d29d7c6eSMatthew G. Knepley . constants    - The value of each constant
8476d29d7c6eSMatthew G. Knepley - f            - The value of the function at this point in space
8477d29d7c6eSMatthew G. Knepley 
847873ff1848SBarry Smith   Level: intermediate
847973ff1848SBarry Smith 
8480bb7acecfSBarry Smith   Note:
8481bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8482bb7acecfSBarry Smith   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8483bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8484d29d7c6eSMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8485d29d7c6eSMatthew G. Knepley 
8486bb7acecfSBarry Smith   Developer Notes:
8487bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8488bb7acecfSBarry Smith 
8489bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8490bb7acecfSBarry Smith 
84911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8492d29d7c6eSMatthew G. Knepley @*/
8493a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec U, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec X)
8494d71ae5a4SJacob Faibussowitsch {
8495d29d7c6eSMatthew G. Knepley   DM  dmIn;
8496d29d7c6eSMatthew G. Knepley   Vec localU, localX;
8497d29d7c6eSMatthew G. Knepley 
8498d29d7c6eSMatthew G. Knepley   PetscFunctionBegin;
8499d29d7c6eSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8500d29d7c6eSMatthew G. Knepley   PetscCall(VecGetDM(U, &dmIn));
8501d29d7c6eSMatthew G. Knepley   PetscCall(DMGetLocalVector(dmIn, &localU));
8502d29d7c6eSMatthew G. Knepley   PetscCall(DMGetLocalVector(dm, &localX));
8503f60fa741SMatthew G. Knepley   PetscCall(VecSet(localX, 0.));
850472fc1ce5SMatthew G. Knepley   PetscCall(DMGlobalToLocalBegin(dmIn, U, mode, localU));
850572fc1ce5SMatthew G. Knepley   PetscCall(DMGlobalToLocalEnd(dmIn, U, mode, localU));
8506d29d7c6eSMatthew G. Knepley   PetscCall(DMProjectFieldLabelLocal(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX));
8507d29d7c6eSMatthew G. Knepley   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
8508d29d7c6eSMatthew G. Knepley   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
8509d29d7c6eSMatthew G. Knepley   PetscCall(DMRestoreLocalVector(dm, &localX));
8510d29d7c6eSMatthew G. Knepley   PetscCall(DMRestoreLocalVector(dmIn, &localU));
85113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8512d29d7c6eSMatthew G. Knepley }
8513d29d7c6eSMatthew G. Knepley 
8514d29d7c6eSMatthew G. Knepley /*@C
8515ece3a9fcSMatthew G. Knepley   DMProjectBdFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain boundary specified by the label.
8516ece3a9fcSMatthew G. Knepley 
851720f4b53cSBarry Smith   Not Collective
8518ece3a9fcSMatthew G. Knepley 
8519ece3a9fcSMatthew G. Knepley   Input Parameters:
8520bb7acecfSBarry Smith + dm     - The `DM`
8521ece3a9fcSMatthew G. Knepley . time   - The time
8522bb7acecfSBarry Smith . label  - The `DMLabel` marking the portion of the domain boundary to output
8523ece3a9fcSMatthew G. Knepley . numIds - The number of label ids to use
8524ece3a9fcSMatthew G. Knepley . ids    - The label ids to use for marking
8525bb7acecfSBarry Smith . Nc     - The number of components to set in the output, or `PETSC_DETERMINE` for all components
852620f4b53cSBarry Smith . comps  - The components to set in the output, or `NULL` for all components
8527ece3a9fcSMatthew G. Knepley . localU - The input field vector
8528ece3a9fcSMatthew G. Knepley . funcs  - The functions to evaluate, one per field
8529ece3a9fcSMatthew G. Knepley - mode   - The insertion mode for values
8530ece3a9fcSMatthew G. Knepley 
8531ece3a9fcSMatthew G. Knepley   Output Parameter:
8532ece3a9fcSMatthew G. Knepley . localX - The output vector
8533ece3a9fcSMatthew G. Knepley 
853420f4b53cSBarry Smith   Calling sequence of `funcs`:
8535ece3a9fcSMatthew G. Knepley + dim          - The spatial dimension
8536ece3a9fcSMatthew G. Knepley . Nf           - The number of input fields
8537ece3a9fcSMatthew G. Knepley . NfAux        - The number of input auxiliary fields
8538ece3a9fcSMatthew G. Knepley . uOff         - The offset of each field in u[]
8539ece3a9fcSMatthew G. Knepley . uOff_x       - The offset of each field in u_x[]
8540ece3a9fcSMatthew G. Knepley . u            - The field values at this point in space
8541ece3a9fcSMatthew G. Knepley . u_t          - The field time derivative at this point in space (or NULL)
8542ece3a9fcSMatthew G. Knepley . u_x          - The field derivatives at this point in space
8543ece3a9fcSMatthew G. Knepley . aOff         - The offset of each auxiliary field in u[]
8544ece3a9fcSMatthew G. Knepley . aOff_x       - The offset of each auxiliary field in u_x[]
8545ece3a9fcSMatthew G. Knepley . a            - The auxiliary field values at this point in space
8546ece3a9fcSMatthew G. Knepley . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8547ece3a9fcSMatthew G. Knepley . a_x          - The auxiliary field derivatives at this point in space
8548ece3a9fcSMatthew G. Knepley . t            - The current time
8549ece3a9fcSMatthew G. Knepley . x            - The coordinates of this point
8550ece3a9fcSMatthew G. Knepley . n            - The face normal
8551ece3a9fcSMatthew G. Knepley . numConstants - The number of constants
8552ece3a9fcSMatthew G. Knepley . constants    - The value of each constant
8553ece3a9fcSMatthew G. Knepley - f            - The value of the function at this point in space
8554ece3a9fcSMatthew G. Knepley 
855573ff1848SBarry Smith   Level: intermediate
855673ff1848SBarry Smith 
8557ece3a9fcSMatthew G. Knepley   Note:
8558bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8559bb7acecfSBarry Smith   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8560bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8561ece3a9fcSMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8562ece3a9fcSMatthew G. Knepley 
8563bb7acecfSBarry Smith   Developer Notes:
8564bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8565bb7acecfSBarry Smith 
8566bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8567bb7acecfSBarry Smith 
85681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8569ece3a9fcSMatthew G. Knepley @*/
8570a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectBdFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX)
8571d71ae5a4SJacob Faibussowitsch {
8572ece3a9fcSMatthew G. Knepley   PetscFunctionBegin;
8573ece3a9fcSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8574064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localU, VEC_CLASSID, 8);
8575064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
8576fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectbdfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX);
85773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8578ece3a9fcSMatthew G. Knepley }
8579ece3a9fcSMatthew G. Knepley 
8580ece3a9fcSMatthew G. Knepley /*@C
85812716604bSToby Isaac   DMComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h.
85822716604bSToby Isaac 
858320f4b53cSBarry Smith   Collective
8584bb7acecfSBarry Smith 
85852716604bSToby Isaac   Input Parameters:
8586bb7acecfSBarry Smith + dm    - The `DM`
85870709b2feSToby Isaac . time  - The time
85882716604bSToby Isaac . funcs - The functions to evaluate for each field component
85892716604bSToby Isaac . ctxs  - Optional array of contexts to pass to each function, or NULL.
8590574a98acSMatthew G. Knepley - X     - The coefficient vector u_h, a global vector
85912716604bSToby Isaac 
85922716604bSToby Isaac   Output Parameter:
85932716604bSToby Isaac . diff - The diff ||u - u_h||_2
85942716604bSToby Isaac 
85952716604bSToby Isaac   Level: developer
85962716604bSToby Isaac 
8597bb7acecfSBarry Smith   Developer Notes:
8598bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8599bb7acecfSBarry Smith 
8600bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8601bb7acecfSBarry Smith 
86021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
86032716604bSToby Isaac @*/
8604d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
8605d71ae5a4SJacob Faibussowitsch {
86062716604bSToby Isaac   PetscFunctionBegin;
86072716604bSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8608b698f381SToby Isaac   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
8609fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, computel2diff, time, funcs, ctxs, X, diff);
86103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
86112716604bSToby Isaac }
8612b698f381SToby Isaac 
8613b698f381SToby Isaac /*@C
8614b698f381SToby Isaac   DMComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h.
8615b698f381SToby Isaac 
861620f4b53cSBarry Smith   Collective
8617d083f849SBarry Smith 
8618b698f381SToby Isaac   Input Parameters:
8619bb7acecfSBarry Smith + dm    - The `DM`
8620a4e35b19SJacob Faibussowitsch . time  - The time
8621b698f381SToby Isaac . funcs - The gradient functions to evaluate for each field component
8622b698f381SToby Isaac . ctxs  - Optional array of contexts to pass to each function, or NULL.
8623574a98acSMatthew G. Knepley . X     - The coefficient vector u_h, a global vector
8624b698f381SToby Isaac - n     - The vector to project along
8625b698f381SToby Isaac 
8626b698f381SToby Isaac   Output Parameter:
8627b698f381SToby Isaac . diff - The diff ||(grad u - grad u_h) . n||_2
8628b698f381SToby Isaac 
8629b698f381SToby Isaac   Level: developer
8630b698f381SToby Isaac 
8631bb7acecfSBarry Smith   Developer Notes:
8632bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8633bb7acecfSBarry Smith 
8634bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8635bb7acecfSBarry Smith 
86361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMComputeL2FieldDiff()`
8637b698f381SToby Isaac @*/
8638d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff)
8639d71ae5a4SJacob Faibussowitsch {
8640b698f381SToby Isaac   PetscFunctionBegin;
8641b698f381SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8642b698f381SToby Isaac   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
8643fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, computel2gradientdiff, time, funcs, ctxs, X, n, diff);
86443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8645b698f381SToby Isaac }
8646b698f381SToby Isaac 
86472a16baeaSToby Isaac /*@C
86482a16baeaSToby Isaac   DMComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components.
86492a16baeaSToby Isaac 
865020f4b53cSBarry Smith   Collective
8651d083f849SBarry Smith 
86522a16baeaSToby Isaac   Input Parameters:
8653bb7acecfSBarry Smith + dm    - The `DM`
86542a16baeaSToby Isaac . time  - The time
86552a16baeaSToby Isaac . funcs - The functions to evaluate for each field component
86562a16baeaSToby Isaac . ctxs  - Optional array of contexts to pass to each function, or NULL.
8657574a98acSMatthew G. Knepley - X     - The coefficient vector u_h, a global vector
86582a16baeaSToby Isaac 
86592a16baeaSToby Isaac   Output Parameter:
86602a16baeaSToby Isaac . diff - The array of differences, ||u^f - u^f_h||_2
86612a16baeaSToby Isaac 
86622a16baeaSToby Isaac   Level: developer
86632a16baeaSToby Isaac 
8664bb7acecfSBarry Smith   Developer Notes:
8665bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8666bb7acecfSBarry Smith 
8667bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8668bb7acecfSBarry Smith 
866942747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2GradientDiff()`
86702a16baeaSToby Isaac @*/
8671d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[])
8672d71ae5a4SJacob Faibussowitsch {
86732a16baeaSToby Isaac   PetscFunctionBegin;
86742a16baeaSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
86752a16baeaSToby Isaac   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
8676fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, computel2fielddiff, time, funcs, ctxs, X, diff);
86773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
86782a16baeaSToby Isaac }
86792a16baeaSToby Isaac 
8680df0b854cSToby Isaac /*@C
8681bb7acecfSBarry Smith   DMGetNeighbors - Gets an array containing the MPI ranks of all the processes neighbors
8682502a2867SDave May 
8683502a2867SDave May   Not Collective
8684502a2867SDave May 
8685502a2867SDave May   Input Parameter:
8686bb7acecfSBarry Smith . dm - The `DM`
8687502a2867SDave May 
86880a19bb7dSprj-   Output Parameters:
86890a19bb7dSprj- + nranks - the number of neighbours
86900a19bb7dSprj- - ranks  - the neighbors ranks
8691502a2867SDave May 
86929bdbcad8SBarry Smith   Level: beginner
86939bdbcad8SBarry Smith 
8694bb7acecfSBarry Smith   Note:
8695bb7acecfSBarry Smith   Do not free the array, it is freed when the `DM` is destroyed.
8696502a2867SDave May 
86971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDAGetNeighbors()`, `PetscSFGetRootRanks()`
8698502a2867SDave May @*/
8699d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNeighbors(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[])
8700d71ae5a4SJacob Faibussowitsch {
8701502a2867SDave May   PetscFunctionBegin;
8702502a2867SDave May   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8703fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, getneighbors, nranks, ranks);
87043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8705502a2867SDave May }
8706502a2867SDave May 
8707531c7667SBarry Smith #include <petsc/private/matimpl.h> /* Needed because of coloring->ctype below */
8708531c7667SBarry Smith 
8709531c7667SBarry Smith /*
8710531c7667SBarry Smith     Converts the input vector to a ghosted vector and then calls the standard coloring code.
87112b6f951bSStefano Zampini     This must be a different function because it requires DM which is not defined in the Mat library
8712531c7667SBarry Smith */
871366976f2fSJacob Faibussowitsch static PetscErrorCode MatFDColoringApply_AIJDM(Mat J, MatFDColoring coloring, Vec x1, void *sctx)
8714d71ae5a4SJacob Faibussowitsch {
8715531c7667SBarry Smith   PetscFunctionBegin;
8716531c7667SBarry Smith   if (coloring->ctype == IS_COLORING_LOCAL) {
8717531c7667SBarry Smith     Vec x1local;
8718531c7667SBarry Smith     DM  dm;
87199566063dSJacob Faibussowitsch     PetscCall(MatGetDM(J, &dm));
87207a8be351SBarry Smith     PetscCheck(dm, PetscObjectComm((PetscObject)J), PETSC_ERR_ARG_INCOMP, "IS_COLORING_LOCAL requires a DM");
87219566063dSJacob Faibussowitsch     PetscCall(DMGetLocalVector(dm, &x1local));
87229566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalBegin(dm, x1, INSERT_VALUES, x1local));
87239566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalEnd(dm, x1, INSERT_VALUES, x1local));
8724531c7667SBarry Smith     x1 = x1local;
8725531c7667SBarry Smith   }
87269566063dSJacob Faibussowitsch   PetscCall(MatFDColoringApply_AIJ(J, coloring, x1, sctx));
8727531c7667SBarry Smith   if (coloring->ctype == IS_COLORING_LOCAL) {
8728531c7667SBarry Smith     DM dm;
87299566063dSJacob Faibussowitsch     PetscCall(MatGetDM(J, &dm));
87309566063dSJacob Faibussowitsch     PetscCall(DMRestoreLocalVector(dm, &x1));
8731531c7667SBarry Smith   }
87323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8733531c7667SBarry Smith }
8734531c7667SBarry Smith 
8735531c7667SBarry Smith /*@
8736bb7acecfSBarry Smith   MatFDColoringUseDM - allows a `MatFDColoring` object to use the `DM` associated with the matrix to compute a `IS_COLORING_LOCAL` coloring
8737531c7667SBarry Smith 
8738a4e35b19SJacob Faibussowitsch   Input Parameters:
8739a4e35b19SJacob Faibussowitsch + coloring   - The matrix to get the `DM` from
8740a4e35b19SJacob Faibussowitsch - fdcoloring - the `MatFDColoring` object
8741531c7667SBarry Smith 
87429bdbcad8SBarry Smith   Level: advanced
87439bdbcad8SBarry Smith 
874473ff1848SBarry Smith   Developer Note:
874573ff1848SBarry Smith   This routine exists because the PETSc `Mat` library does not know about the `DM` objects
8746531c7667SBarry Smith 
87471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatFDColoring`, `MatFDColoringCreate()`, `ISColoringType`
8748531c7667SBarry Smith @*/
8749d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringUseDM(Mat coloring, MatFDColoring fdcoloring)
8750d71ae5a4SJacob Faibussowitsch {
8751531c7667SBarry Smith   PetscFunctionBegin;
8752531c7667SBarry Smith   coloring->ops->fdcoloringapply = MatFDColoringApply_AIJDM;
87533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8754531c7667SBarry Smith }
87558320bc6fSPatrick Sanan 
87568320bc6fSPatrick Sanan /*@
8757bb7acecfSBarry Smith   DMGetCompatibility - determine if two `DM`s are compatible
87588320bc6fSPatrick Sanan 
87598320bc6fSPatrick Sanan   Collective
87608320bc6fSPatrick Sanan 
87618320bc6fSPatrick Sanan   Input Parameters:
8762bb7acecfSBarry Smith + dm1 - the first `DM`
8763bb7acecfSBarry Smith - dm2 - the second `DM`
87648320bc6fSPatrick Sanan 
87658320bc6fSPatrick Sanan   Output Parameters:
8766bb7acecfSBarry Smith + compatible - whether or not the two `DM`s are compatible
8767bb7acecfSBarry Smith - set        - whether or not the compatible value was actually determined and set
87688320bc6fSPatrick Sanan 
876920f4b53cSBarry Smith   Level: advanced
877020f4b53cSBarry Smith 
87718320bc6fSPatrick Sanan   Notes:
8772bb7acecfSBarry Smith   Two `DM`s are deemed compatible if they represent the same parallel decomposition
87733d862458SPatrick Sanan   of the same topology. This implies that the section (field data) on one
87748320bc6fSPatrick Sanan   "makes sense" with respect to the topology and parallel decomposition of the other.
8775bb7acecfSBarry Smith   Loosely speaking, compatible `DM`s represent the same domain and parallel
87763d862458SPatrick Sanan   decomposition, but hold different data.
87778320bc6fSPatrick Sanan 
87788320bc6fSPatrick Sanan   Typically, one would confirm compatibility if intending to simultaneously iterate
8779bb7acecfSBarry Smith   over a pair of vectors obtained from different `DM`s.
87808320bc6fSPatrick Sanan 
8781bb7acecfSBarry Smith   For example, two `DMDA` objects are compatible if they have the same local
87828320bc6fSPatrick Sanan   and global sizes and the same stencil width. They can have different numbers
87838320bc6fSPatrick Sanan   of degrees of freedom per node. Thus, one could use the node numbering from
8784bb7acecfSBarry Smith   either `DM` in bounds for a loop over vectors derived from either `DM`.
87858320bc6fSPatrick Sanan 
8786bb7acecfSBarry Smith   Consider the operation of summing data living on a 2-dof `DMDA` to data living
8787bb7acecfSBarry Smith   on a 1-dof `DMDA`, which should be compatible, as in the following snippet.
87888320bc6fSPatrick Sanan .vb
87898320bc6fSPatrick Sanan   ...
87909566063dSJacob Faibussowitsch   PetscCall(DMGetCompatibility(da1,da2,&compatible,&set));
87918320bc6fSPatrick Sanan   if (set && compatible)  {
87929566063dSJacob Faibussowitsch     PetscCall(DMDAVecGetArrayDOF(da1,vec1,&arr1));
87939566063dSJacob Faibussowitsch     PetscCall(DMDAVecGetArrayDOF(da2,vec2,&arr2));
87949566063dSJacob Faibussowitsch     PetscCall(DMDAGetCorners(da1,&x,&y,NULL,&m,&n,NULL));
87958320bc6fSPatrick Sanan     for (j=y; j<y+n; ++j) {
87968320bc6fSPatrick Sanan       for (i=x; i<x+m, ++i) {
87978320bc6fSPatrick Sanan         arr1[j][i][0] = arr2[j][i][0] + arr2[j][i][1];
87988320bc6fSPatrick Sanan       }
87998320bc6fSPatrick Sanan     }
88009566063dSJacob Faibussowitsch     PetscCall(DMDAVecRestoreArrayDOF(da1,vec1,&arr1));
88019566063dSJacob Faibussowitsch     PetscCall(DMDAVecRestoreArrayDOF(da2,vec2,&arr2));
88028320bc6fSPatrick Sanan   } else {
88038320bc6fSPatrick Sanan     SETERRQ(PetscObjectComm((PetscObject)da1,PETSC_ERR_ARG_INCOMP,"DMDA objects incompatible");
88048320bc6fSPatrick Sanan   }
88058320bc6fSPatrick Sanan   ...
88068320bc6fSPatrick Sanan .ve
88078320bc6fSPatrick Sanan 
8808bb7acecfSBarry Smith   Checking compatibility might be expensive for a given implementation of `DM`,
88098320bc6fSPatrick Sanan   or might be impossible to unambiguously confirm or deny. For this reason,
88108320bc6fSPatrick Sanan   this function may decline to determine compatibility, and hence users should
88118320bc6fSPatrick Sanan   always check the "set" output parameter.
88128320bc6fSPatrick Sanan 
8813bb7acecfSBarry Smith   A `DM` is always compatible with itself.
88148320bc6fSPatrick Sanan 
8815bb7acecfSBarry Smith   In the current implementation, `DM`s which live on "unequal" communicators
88168320bc6fSPatrick Sanan   (MPI_UNEQUAL in the terminology of MPI_Comm_compare()) are always deemed
88178320bc6fSPatrick Sanan   incompatible.
88188320bc6fSPatrick Sanan 
88198320bc6fSPatrick Sanan   This function is labeled "Collective," as information about all subdomains
8820bb7acecfSBarry Smith   is required on each rank. However, in `DM` implementations which store all this
88218320bc6fSPatrick Sanan   information locally, this function may be merely "Logically Collective".
88228320bc6fSPatrick Sanan 
882373ff1848SBarry Smith   Developer Note:
8824bb7acecfSBarry Smith   Compatibility is assumed to be a symmetric concept; `DM` A is compatible with `DM` B
88253d862458SPatrick Sanan   iff B is compatible with A. Thus, this function checks the implementations
8826a5bc1bf3SBarry Smith   of both dm and dmc (if they are of different types), attempting to determine
8827bb7acecfSBarry Smith   compatibility. It is left to `DM` implementers to ensure that symmetry is
88288320bc6fSPatrick Sanan   preserved. The simplest way to do this is, when implementing type-specific
88293d862458SPatrick Sanan   logic for this function, is to check for existing logic in the implementation
8830bb7acecfSBarry Smith   of other `DM` types and let *set = PETSC_FALSE if found.
88318320bc6fSPatrick Sanan 
88321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreateCompatibleDMDA()`, `DMStagCreateCompatibleDMStag()`
88338320bc6fSPatrick Sanan @*/
8834d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCompatibility(DM dm1, DM dm2, PetscBool *compatible, PetscBool *set)
8835d71ae5a4SJacob Faibussowitsch {
88368320bc6fSPatrick Sanan   PetscMPIInt compareResult;
88378320bc6fSPatrick Sanan   DMType      type, type2;
88388320bc6fSPatrick Sanan   PetscBool   sameType;
88398320bc6fSPatrick Sanan 
88408320bc6fSPatrick Sanan   PetscFunctionBegin;
8841a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dm1, DM_CLASSID, 1);
88428320bc6fSPatrick Sanan   PetscValidHeaderSpecific(dm2, DM_CLASSID, 2);
88438320bc6fSPatrick Sanan 
88448320bc6fSPatrick Sanan   /* Declare a DM compatible with itself */
8845a5bc1bf3SBarry Smith   if (dm1 == dm2) {
88468320bc6fSPatrick Sanan     *set        = PETSC_TRUE;
88478320bc6fSPatrick Sanan     *compatible = PETSC_TRUE;
88483ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
88498320bc6fSPatrick Sanan   }
88508320bc6fSPatrick Sanan 
88518320bc6fSPatrick Sanan   /* Declare a DM incompatible with a DM that lives on an "unequal"
88528320bc6fSPatrick Sanan      communicator. Note that this does not preclude compatibility with
88538320bc6fSPatrick Sanan      DMs living on "congruent" or "similar" communicators, but this must be
88548320bc6fSPatrick Sanan      determined by the implementation-specific logic */
88559566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)dm1), PetscObjectComm((PetscObject)dm2), &compareResult));
88568320bc6fSPatrick Sanan   if (compareResult == MPI_UNEQUAL) {
88578320bc6fSPatrick Sanan     *set        = PETSC_TRUE;
88588320bc6fSPatrick Sanan     *compatible = PETSC_FALSE;
88593ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
88608320bc6fSPatrick Sanan   }
88618320bc6fSPatrick Sanan 
88628320bc6fSPatrick Sanan   /* Pass to the implementation-specific routine, if one exists. */
8863a5bc1bf3SBarry Smith   if (dm1->ops->getcompatibility) {
8864dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm1, getcompatibility, dm2, compatible, set);
88653ba16761SJacob Faibussowitsch     if (*set) PetscFunctionReturn(PETSC_SUCCESS);
88668320bc6fSPatrick Sanan   }
88678320bc6fSPatrick Sanan 
8868a5bc1bf3SBarry Smith   /* If dm1 and dm2 are of different types, then attempt to check compatibility
88698320bc6fSPatrick Sanan      with an implementation of this function from dm2 */
88709566063dSJacob Faibussowitsch   PetscCall(DMGetType(dm1, &type));
88719566063dSJacob Faibussowitsch   PetscCall(DMGetType(dm2, &type2));
88729566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(type, type2, &sameType));
88738320bc6fSPatrick Sanan   if (!sameType && dm2->ops->getcompatibility) {
8874dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm2, getcompatibility, dm1, compatible, set); /* Note argument order */
88758320bc6fSPatrick Sanan   } else {
88768320bc6fSPatrick Sanan     *set = PETSC_FALSE;
88778320bc6fSPatrick Sanan   }
88783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
88798320bc6fSPatrick Sanan }
8880c0f0dcc3SMatthew G. Knepley 
8881c0f0dcc3SMatthew G. Knepley /*@C
8882bb7acecfSBarry Smith   DMMonitorSet - Sets an additional monitor function that is to be used after a solve to monitor discretization performance.
8883c0f0dcc3SMatthew G. Knepley 
888420f4b53cSBarry Smith   Logically Collective
8885c0f0dcc3SMatthew G. Knepley 
8886c0f0dcc3SMatthew G. Knepley   Input Parameters:
888760225df5SJacob Faibussowitsch + dm             - the `DM`
8888c0f0dcc3SMatthew G. Knepley . f              - the monitor function
888920f4b53cSBarry Smith . mctx           - [optional] user-defined context for private data for the monitor routine (use `NULL` if no context is desired)
889049abdd8aSBarry Smith - monitordestroy - [optional] routine that frees monitor context (may be `NULL`), see `PetscCtxDestroyFn` for the calling sequence
8891c0f0dcc3SMatthew G. Knepley 
889220f4b53cSBarry Smith   Options Database Key:
889360225df5SJacob Faibussowitsch . -dm_monitor_cancel - cancels all monitors that have been hardwired into a code by calls to `DMMonitorSet()`, but
8894c0f0dcc3SMatthew G. Knepley                        does not cancel those set via the options database.
8895c0f0dcc3SMatthew G. Knepley 
88969bdbcad8SBarry Smith   Level: intermediate
88979bdbcad8SBarry Smith 
8898bb7acecfSBarry Smith   Note:
8899c0f0dcc3SMatthew G. Knepley   Several different monitoring routines may be set by calling
8900bb7acecfSBarry Smith   `DMMonitorSet()` multiple times or with `DMMonitorSetFromOptions()`; all will be called in the
8901c0f0dcc3SMatthew G. Knepley   order in which they were set.
8902c0f0dcc3SMatthew G. Knepley 
890373ff1848SBarry Smith   Fortran Note:
8904bb7acecfSBarry Smith   Only a single monitor function can be set for each `DM` object
8905bb7acecfSBarry Smith 
890673ff1848SBarry Smith   Developer Note:
8907bb7acecfSBarry Smith   This API has a generic name but seems specific to a very particular aspect of the use of `DM`
8908c0f0dcc3SMatthew G. Knepley 
890949abdd8aSBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorCancel()`, `DMMonitorSetFromOptions()`, `DMMonitor()`, `PetscCtxDestroyFn`
8910c0f0dcc3SMatthew G. Knepley @*/
891149abdd8aSBarry Smith PetscErrorCode DMMonitorSet(DM dm, PetscErrorCode (*f)(DM, void *), void *mctx, PetscCtxDestroyFn *monitordestroy)
8912d71ae5a4SJacob Faibussowitsch {
8913c0f0dcc3SMatthew G. Knepley   PetscInt m;
8914c0f0dcc3SMatthew G. Knepley 
8915c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
8916c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8917c0f0dcc3SMatthew G. Knepley   for (m = 0; m < dm->numbermonitors; ++m) {
8918c0f0dcc3SMatthew G. Knepley     PetscBool identical;
8919c0f0dcc3SMatthew G. Knepley 
89209566063dSJacob Faibussowitsch     PetscCall(PetscMonitorCompare((PetscErrorCode (*)(void))f, mctx, monitordestroy, (PetscErrorCode (*)(void))dm->monitor[m], dm->monitorcontext[m], dm->monitordestroy[m], &identical));
89213ba16761SJacob Faibussowitsch     if (identical) PetscFunctionReturn(PETSC_SUCCESS);
8922c0f0dcc3SMatthew G. Knepley   }
89237a8be351SBarry Smith   PetscCheck(dm->numbermonitors < MAXDMMONITORS, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many monitors set");
8924c0f0dcc3SMatthew G. Knepley   dm->monitor[dm->numbermonitors]          = f;
8925c0f0dcc3SMatthew G. Knepley   dm->monitordestroy[dm->numbermonitors]   = monitordestroy;
8926835f2295SStefano Zampini   dm->monitorcontext[dm->numbermonitors++] = mctx;
89273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8928c0f0dcc3SMatthew G. Knepley }
8929c0f0dcc3SMatthew G. Knepley 
8930c0f0dcc3SMatthew G. Knepley /*@
8931bb7acecfSBarry Smith   DMMonitorCancel - Clears all the monitor functions for a `DM` object.
8932c0f0dcc3SMatthew G. Knepley 
893320f4b53cSBarry Smith   Logically Collective
8934c0f0dcc3SMatthew G. Knepley 
8935c0f0dcc3SMatthew G. Knepley   Input Parameter:
8936c0f0dcc3SMatthew G. Knepley . dm - the DM
8937c0f0dcc3SMatthew G. Knepley 
8938c0f0dcc3SMatthew G. Knepley   Options Database Key:
8939c0f0dcc3SMatthew G. Knepley . -dm_monitor_cancel - cancels all monitors that have been hardwired
8940bb7acecfSBarry Smith   into a code by calls to `DMonitorSet()`, but does not cancel those
8941c0f0dcc3SMatthew G. Knepley   set via the options database
8942c0f0dcc3SMatthew G. Knepley 
89439bdbcad8SBarry Smith   Level: intermediate
89449bdbcad8SBarry Smith 
8945bb7acecfSBarry Smith   Note:
8946bb7acecfSBarry Smith   There is no way to clear one specific monitor from a `DM` object.
8947c0f0dcc3SMatthew G. Knepley 
89481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`, `DMMonitor()`
8949c0f0dcc3SMatthew G. Knepley @*/
8950d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorCancel(DM dm)
8951d71ae5a4SJacob Faibussowitsch {
8952c0f0dcc3SMatthew G. Knepley   PetscInt m;
8953c0f0dcc3SMatthew G. Knepley 
8954c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
8955c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8956c0f0dcc3SMatthew G. Knepley   for (m = 0; m < dm->numbermonitors; ++m) {
89579566063dSJacob Faibussowitsch     if (dm->monitordestroy[m]) PetscCall((*dm->monitordestroy[m])(&dm->monitorcontext[m]));
8958c0f0dcc3SMatthew G. Knepley   }
8959c0f0dcc3SMatthew G. Knepley   dm->numbermonitors = 0;
89603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8961c0f0dcc3SMatthew G. Knepley }
8962c0f0dcc3SMatthew G. Knepley 
8963c0f0dcc3SMatthew G. Knepley /*@C
8964c0f0dcc3SMatthew G. Knepley   DMMonitorSetFromOptions - Sets a monitor function and viewer appropriate for the type indicated by the user
8965c0f0dcc3SMatthew G. Knepley 
896620f4b53cSBarry Smith   Collective
8967c0f0dcc3SMatthew G. Knepley 
8968c0f0dcc3SMatthew G. Knepley   Input Parameters:
8969bb7acecfSBarry Smith + dm           - `DM` object you wish to monitor
8970c0f0dcc3SMatthew G. Knepley . name         - the monitor type one is seeking
8971c0f0dcc3SMatthew G. Knepley . help         - message indicating what monitoring is done
8972c0f0dcc3SMatthew G. Knepley . manual       - manual page for the monitor
897349abdd8aSBarry Smith . monitor      - the monitor function, this must use a `PetscViewerFormat` as its context
8974bb7acecfSBarry Smith - monitorsetup - a function that is called once ONLY if the user selected this monitor that may set additional features of the `DM` or `PetscViewer` objects
8975c0f0dcc3SMatthew G. Knepley 
8976c0f0dcc3SMatthew G. Knepley   Output Parameter:
8977c0f0dcc3SMatthew G. Knepley . flg - Flag set if the monitor was created
8978c0f0dcc3SMatthew G. Knepley 
8979c0f0dcc3SMatthew G. Knepley   Level: developer
8980c0f0dcc3SMatthew G. Knepley 
8981648c30bcSBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscOptionsCreateViewer()`, `PetscOptionsGetReal()`, `PetscOptionsHasName()`, `PetscOptionsGetString()`,
8982db781477SPatrick Sanan           `PetscOptionsGetIntArray()`, `PetscOptionsGetRealArray()`, `PetscOptionsBool()`
898360225df5SJacob Faibussowitsch           `PetscOptionsInt()`, `PetscOptionsString()`, `PetscOptionsReal()`,
8984db781477SPatrick Sanan           `PetscOptionsName()`, `PetscOptionsBegin()`, `PetscOptionsEnd()`, `PetscOptionsHeadBegin()`,
8985c2e3fba1SPatrick Sanan           `PetscOptionsStringArray()`, `PetscOptionsRealArray()`, `PetscOptionsScalar()`,
8986db781477SPatrick Sanan           `PetscOptionsBoolGroupBegin()`, `PetscOptionsBoolGroup()`, `PetscOptionsBoolGroupEnd()`,
8987bb7acecfSBarry Smith           `PetscOptionsFList()`, `PetscOptionsEList()`, `DMMonitor()`, `DMMonitorSet()`
8988c0f0dcc3SMatthew G. Knepley @*/
8989d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSetFromOptions(DM dm, const char name[], const char help[], const char manual[], PetscErrorCode (*monitor)(DM, void *), PetscErrorCode (*monitorsetup)(DM, PetscViewerAndFormat *), PetscBool *flg)
8990d71ae5a4SJacob Faibussowitsch {
8991c0f0dcc3SMatthew G. Knepley   PetscViewer       viewer;
8992c0f0dcc3SMatthew G. Knepley   PetscViewerFormat format;
8993c0f0dcc3SMatthew G. Knepley 
8994c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
8995c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8996648c30bcSBarry Smith   PetscCall(PetscOptionsCreateViewer(PetscObjectComm((PetscObject)dm), ((PetscObject)dm)->options, ((PetscObject)dm)->prefix, name, &viewer, &format, flg));
8997c0f0dcc3SMatthew G. Knepley   if (*flg) {
8998c0f0dcc3SMatthew G. Knepley     PetscViewerAndFormat *vf;
8999c0f0dcc3SMatthew G. Knepley 
90009566063dSJacob Faibussowitsch     PetscCall(PetscViewerAndFormatCreate(viewer, format, &vf));
9001648c30bcSBarry Smith     PetscCall(PetscViewerDestroy(&viewer));
90029566063dSJacob Faibussowitsch     if (monitorsetup) PetscCall((*monitorsetup)(dm, vf));
9003835f2295SStefano Zampini     PetscCall(DMMonitorSet(dm, monitor, vf, (PetscCtxDestroyFn *)PetscViewerAndFormatDestroy));
9004c0f0dcc3SMatthew G. Knepley   }
90053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9006c0f0dcc3SMatthew G. Knepley }
9007c0f0dcc3SMatthew G. Knepley 
9008c0f0dcc3SMatthew G. Knepley /*@
9009c0f0dcc3SMatthew G. Knepley   DMMonitor - runs the user provided monitor routines, if they exist
9010c0f0dcc3SMatthew G. Knepley 
901120f4b53cSBarry Smith   Collective
9012c0f0dcc3SMatthew G. Knepley 
90132fe279fdSBarry Smith   Input Parameter:
9014bb7acecfSBarry Smith . dm - The `DM`
9015c0f0dcc3SMatthew G. Knepley 
9016c0f0dcc3SMatthew G. Knepley   Level: developer
9017c0f0dcc3SMatthew G. Knepley 
901873ff1848SBarry Smith   Developer Note:
9019a4e35b19SJacob Faibussowitsch   Note should indicate when during the life of the `DM` the monitor is run. It appears to be
9020a4e35b19SJacob Faibussowitsch   related to the discretization process seems rather specialized since some `DM` have no
9021a4e35b19SJacob Faibussowitsch   concept of discretization.
9022bb7acecfSBarry Smith 
90231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`
9024c0f0dcc3SMatthew G. Knepley @*/
9025d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitor(DM dm)
9026d71ae5a4SJacob Faibussowitsch {
9027c0f0dcc3SMatthew G. Knepley   PetscInt m;
9028c0f0dcc3SMatthew G. Knepley 
9029c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
90303ba16761SJacob Faibussowitsch   if (!dm) PetscFunctionReturn(PETSC_SUCCESS);
9031c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
903248a46eb9SPierre Jolivet   for (m = 0; m < dm->numbermonitors; ++m) PetscCall((*dm->monitor[m])(dm, dm->monitorcontext[m]));
90333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9034c0f0dcc3SMatthew G. Knepley }
90352e4af2aeSMatthew G. Knepley 
90362e4af2aeSMatthew G. Knepley /*@
9037bb7acecfSBarry Smith   DMComputeError - Computes the error assuming the user has provided the exact solution functions
90382e4af2aeSMatthew G. Knepley 
903920f4b53cSBarry Smith   Collective
90402e4af2aeSMatthew G. Knepley 
90412e4af2aeSMatthew G. Knepley   Input Parameters:
9042bb7acecfSBarry Smith + dm  - The `DM`
90436b867d5aSJose E. Roman - sol - The solution vector
90442e4af2aeSMatthew G. Knepley 
90456b867d5aSJose E. Roman   Input/Output Parameter:
904620f4b53cSBarry Smith . errors - An array of length Nf, the number of fields, or `NULL` for no output; on output
90476b867d5aSJose E. Roman            contains the error in each field
90486b867d5aSJose E. Roman 
90496b867d5aSJose E. Roman   Output Parameter:
905020f4b53cSBarry Smith . errorVec - A vector to hold the cellwise error (may be `NULL`)
905120f4b53cSBarry Smith 
905220f4b53cSBarry Smith   Level: developer
90532e4af2aeSMatthew G. Knepley 
9054bb7acecfSBarry Smith   Note:
9055bb7acecfSBarry Smith   The exact solutions come from the `PetscDS` object, and the time comes from `DMGetOutputSequenceNumber()`.
90562e4af2aeSMatthew G. Knepley 
90571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMGetRegionNumDS()`, `PetscDSGetExactSolution()`, `DMGetOutputSequenceNumber()`
90582e4af2aeSMatthew G. Knepley @*/
9059d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeError(DM dm, Vec sol, PetscReal errors[], Vec *errorVec)
9060d71ae5a4SJacob Faibussowitsch {
90612e4af2aeSMatthew G. Knepley   PetscErrorCode (**exactSol)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *);
90622e4af2aeSMatthew G. Knepley   void    **ctxs;
90632e4af2aeSMatthew G. Knepley   PetscReal time;
90642e4af2aeSMatthew G. Knepley   PetscInt  Nf, f, Nds, s;
90652e4af2aeSMatthew G. Knepley 
90662e4af2aeSMatthew G. Knepley   PetscFunctionBegin;
90679566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
90689566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(Nf, &exactSol, Nf, &ctxs));
90699566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
90702e4af2aeSMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
90712e4af2aeSMatthew G. Knepley     PetscDS         ds;
90722e4af2aeSMatthew G. Knepley     DMLabel         label;
90732e4af2aeSMatthew G. Knepley     IS              fieldIS;
90742e4af2aeSMatthew G. Knepley     const PetscInt *fields;
90752e4af2aeSMatthew G. Knepley     PetscInt        dsNf;
90762e4af2aeSMatthew G. Knepley 
907707218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL));
90789566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsNf));
90799566063dSJacob Faibussowitsch     if (fieldIS) PetscCall(ISGetIndices(fieldIS, &fields));
90802e4af2aeSMatthew G. Knepley     for (f = 0; f < dsNf; ++f) {
90812e4af2aeSMatthew G. Knepley       const PetscInt field = fields[f];
90829566063dSJacob Faibussowitsch       PetscCall(PetscDSGetExactSolution(ds, field, &exactSol[field], &ctxs[field]));
90832e4af2aeSMatthew G. Knepley     }
90849566063dSJacob Faibussowitsch     if (fieldIS) PetscCall(ISRestoreIndices(fieldIS, &fields));
90852e4af2aeSMatthew G. Knepley   }
9086ad540459SPierre Jolivet   for (f = 0; f < Nf; ++f) PetscCheck(exactSol[f], PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "DS must contain exact solution functions in order to calculate error, missing for field %" PetscInt_FMT, f);
90879566063dSJacob Faibussowitsch   PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time));
90889566063dSJacob Faibussowitsch   if (errors) PetscCall(DMComputeL2FieldDiff(dm, time, exactSol, ctxs, sol, errors));
90892e4af2aeSMatthew G. Knepley   if (errorVec) {
90902e4af2aeSMatthew G. Knepley     DM             edm;
90912e4af2aeSMatthew G. Knepley     DMPolytopeType ct;
90922e4af2aeSMatthew G. Knepley     PetscBool      simplex;
90932e4af2aeSMatthew G. Knepley     PetscInt       dim, cStart, Nf;
90942e4af2aeSMatthew G. Knepley 
90959566063dSJacob Faibussowitsch     PetscCall(DMClone(dm, &edm));
90969566063dSJacob Faibussowitsch     PetscCall(DMGetDimension(edm, &dim));
90979566063dSJacob Faibussowitsch     PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL));
90989566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCellType(dm, cStart, &ct));
90992e4af2aeSMatthew G. Knepley     simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE;
91009566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
91012e4af2aeSMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
91022e4af2aeSMatthew G. Knepley       PetscFE         fe, efe;
91032e4af2aeSMatthew G. Knepley       PetscQuadrature q;
91042e4af2aeSMatthew G. Knepley       const char     *name;
91052e4af2aeSMatthew G. Knepley 
91069566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe));
91079566063dSJacob Faibussowitsch       PetscCall(PetscFECreateLagrange(PETSC_COMM_SELF, dim, Nf, simplex, 0, PETSC_DETERMINE, &efe));
91089566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetName((PetscObject)fe, &name));
91099566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)efe, name));
91109566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &q));
91119566063dSJacob Faibussowitsch       PetscCall(PetscFESetQuadrature(efe, q));
91129566063dSJacob Faibussowitsch       PetscCall(DMSetField(edm, f, NULL, (PetscObject)efe));
91139566063dSJacob Faibussowitsch       PetscCall(PetscFEDestroy(&efe));
91142e4af2aeSMatthew G. Knepley     }
91159566063dSJacob Faibussowitsch     PetscCall(DMCreateDS(edm));
91162e4af2aeSMatthew G. Knepley 
91179566063dSJacob Faibussowitsch     PetscCall(DMCreateGlobalVector(edm, errorVec));
91189566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)*errorVec, "Error"));
91199566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeL2DiffVec(dm, time, exactSol, ctxs, sol, *errorVec));
91209566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&edm));
91212e4af2aeSMatthew G. Knepley   }
91229566063dSJacob Faibussowitsch   PetscCall(PetscFree2(exactSol, ctxs));
91233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
91242e4af2aeSMatthew G. Knepley }
91259a2a23afSMatthew G. Knepley 
91269a2a23afSMatthew G. Knepley /*@
9127bb7acecfSBarry Smith   DMGetNumAuxiliaryVec - Get the number of auxiliary vectors associated with this `DM`
91289a2a23afSMatthew G. Knepley 
912920f4b53cSBarry Smith   Not Collective
91309a2a23afSMatthew G. Knepley 
91319a2a23afSMatthew G. Knepley   Input Parameter:
9132bb7acecfSBarry Smith . dm - The `DM`
91339a2a23afSMatthew G. Knepley 
91349a2a23afSMatthew G. Knepley   Output Parameter:
9135a5b23f4aSJose E. Roman . numAux - The number of auxiliary data vectors
91369a2a23afSMatthew G. Knepley 
91379a2a23afSMatthew G. Knepley   Level: advanced
91389a2a23afSMatthew G. Knepley 
9139e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMGetAuxiliaryVec()`
91409a2a23afSMatthew G. Knepley @*/
9141d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumAuxiliaryVec(DM dm, PetscInt *numAux)
9142d71ae5a4SJacob Faibussowitsch {
91439a2a23afSMatthew G. Knepley   PetscFunctionBegin;
91449a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
91459566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxGetSize(dm->auxData, numAux));
91463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
91479a2a23afSMatthew G. Knepley }
91489a2a23afSMatthew G. Knepley 
91499a2a23afSMatthew G. Knepley /*@
9150ac17215fSMatthew G. Knepley   DMGetAuxiliaryVec - Get the auxiliary vector for region specified by the given label and value, and equation part
91519a2a23afSMatthew G. Knepley 
915220f4b53cSBarry Smith   Not Collective
91539a2a23afSMatthew G. Knepley 
91549a2a23afSMatthew G. Knepley   Input Parameters:
9155bb7acecfSBarry Smith + dm    - The `DM`
9156bb7acecfSBarry Smith . label - The `DMLabel`
9157ac17215fSMatthew G. Knepley . value - The label value indicating the region
9158ac17215fSMatthew G. Knepley - part  - The equation part, or 0 if unused
91599a2a23afSMatthew G. Knepley 
91609a2a23afSMatthew G. Knepley   Output Parameter:
9161bb7acecfSBarry Smith . aux - The `Vec` holding auxiliary field data
91629a2a23afSMatthew G. Knepley 
91639bdbcad8SBarry Smith   Level: advanced
91649bdbcad8SBarry Smith 
9165bb7acecfSBarry Smith   Note:
9166bb7acecfSBarry Smith   If no auxiliary vector is found for this (label, value), (NULL, 0, 0) is checked as well.
916704c51a94SMatthew G. Knepley 
9168e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryLabels()`
91699a2a23afSMatthew G. Knepley @*/
9170d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec *aux)
9171d71ae5a4SJacob Faibussowitsch {
9172ac17215fSMatthew G. Knepley   PetscHashAuxKey key, wild = {NULL, 0, 0};
917304c51a94SMatthew G. Knepley   PetscBool       has;
91749a2a23afSMatthew G. Knepley 
91759a2a23afSMatthew G. Knepley   PetscFunctionBegin;
91769a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
91779a2a23afSMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
91789a2a23afSMatthew G. Knepley   key.label = label;
91799a2a23afSMatthew G. Knepley   key.value = value;
9180ac17215fSMatthew G. Knepley   key.part  = part;
91819566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxHas(dm->auxData, key, &has));
91829566063dSJacob Faibussowitsch   if (has) PetscCall(PetscHMapAuxGet(dm->auxData, key, aux));
91839566063dSJacob Faibussowitsch   else PetscCall(PetscHMapAuxGet(dm->auxData, wild, aux));
91843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
91859a2a23afSMatthew G. Knepley }
91869a2a23afSMatthew G. Knepley 
91879a2a23afSMatthew G. Knepley /*@
9188bb7acecfSBarry Smith   DMSetAuxiliaryVec - Set an auxiliary vector for region specified by the given label and value, and equation part
91899a2a23afSMatthew G. Knepley 
919020f4b53cSBarry Smith   Not Collective because auxiliary vectors are not parallel
91919a2a23afSMatthew G. Knepley 
91929a2a23afSMatthew G. Knepley   Input Parameters:
9193bb7acecfSBarry Smith + dm    - The `DM`
9194bb7acecfSBarry Smith . label - The `DMLabel`
91959a2a23afSMatthew G. Knepley . value - The label value indicating the region
9196ac17215fSMatthew G. Knepley . part  - The equation part, or 0 if unused
9197bb7acecfSBarry Smith - aux   - The `Vec` holding auxiliary field data
91989a2a23afSMatthew G. Knepley 
91999a2a23afSMatthew G. Knepley   Level: advanced
92009a2a23afSMatthew G. Knepley 
9201e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMCopyAuxiliaryVec()`
92029a2a23afSMatthew G. Knepley @*/
9203d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec aux)
9204d71ae5a4SJacob Faibussowitsch {
92059a2a23afSMatthew G. Knepley   Vec             old;
92069a2a23afSMatthew G. Knepley   PetscHashAuxKey key;
92079a2a23afSMatthew G. Knepley 
92089a2a23afSMatthew G. Knepley   PetscFunctionBegin;
92099a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
92109a2a23afSMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
92119a2a23afSMatthew G. Knepley   key.label = label;
92129a2a23afSMatthew G. Knepley   key.value = value;
9213ac17215fSMatthew G. Knepley   key.part  = part;
92149566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxGet(dm->auxData, key, &old));
92159566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)aux));
92169566063dSJacob Faibussowitsch   if (!aux) PetscCall(PetscHMapAuxDel(dm->auxData, key));
92179566063dSJacob Faibussowitsch   else PetscCall(PetscHMapAuxSet(dm->auxData, key, aux));
9218d705d0eaSStefano Zampini   PetscCall(VecDestroy(&old));
92193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
92209a2a23afSMatthew G. Knepley }
92219a2a23afSMatthew G. Knepley 
9222cc4c1da9SBarry Smith /*@
9223bb7acecfSBarry Smith   DMGetAuxiliaryLabels - Get the labels, values, and parts for all auxiliary vectors in this `DM`
92249a2a23afSMatthew G. Knepley 
922520f4b53cSBarry Smith   Not Collective
92269a2a23afSMatthew G. Knepley 
92279a2a23afSMatthew G. Knepley   Input Parameter:
9228bb7acecfSBarry Smith . dm - The `DM`
92299a2a23afSMatthew G. Knepley 
92309a2a23afSMatthew G. Knepley   Output Parameters:
9231bb7acecfSBarry Smith + labels - The `DMLabel`s for each `Vec`
9232bb7acecfSBarry Smith . values - The label values for each `Vec`
9233bb7acecfSBarry Smith - parts  - The equation parts for each `Vec`
92349a2a23afSMatthew G. Knepley 
92359bdbcad8SBarry Smith   Level: advanced
92369bdbcad8SBarry Smith 
9237bb7acecfSBarry Smith   Note:
9238bb7acecfSBarry Smith   The arrays passed in must be at least as large as `DMGetNumAuxiliaryVec()`.
92399a2a23afSMatthew G. Knepley 
9240e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMCopyAuxiliaryVec()`
92419a2a23afSMatthew G. Knepley @*/
9242d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryLabels(DM dm, DMLabel labels[], PetscInt values[], PetscInt parts[])
9243d71ae5a4SJacob Faibussowitsch {
92449a2a23afSMatthew G. Knepley   PetscHashAuxKey *keys;
92459a2a23afSMatthew G. Knepley   PetscInt         n, i, off = 0;
92469a2a23afSMatthew G. Knepley 
92479a2a23afSMatthew G. Knepley   PetscFunctionBegin;
92489a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
92494f572ea9SToby Isaac   PetscAssertPointer(labels, 2);
92504f572ea9SToby Isaac   PetscAssertPointer(values, 3);
92514f572ea9SToby Isaac   PetscAssertPointer(parts, 4);
92529566063dSJacob Faibussowitsch   PetscCall(DMGetNumAuxiliaryVec(dm, &n));
92539566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &keys));
92549566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxGetKeys(dm->auxData, &off, keys));
92559371c9d4SSatish Balay   for (i = 0; i < n; ++i) {
92569371c9d4SSatish Balay     labels[i] = keys[i].label;
92579371c9d4SSatish Balay     values[i] = keys[i].value;
92589371c9d4SSatish Balay     parts[i]  = keys[i].part;
92599371c9d4SSatish Balay   }
92609566063dSJacob Faibussowitsch   PetscCall(PetscFree(keys));
92613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
92629a2a23afSMatthew G. Knepley }
92639a2a23afSMatthew G. Knepley 
92649a2a23afSMatthew G. Knepley /*@
9265bb7acecfSBarry Smith   DMCopyAuxiliaryVec - Copy the auxiliary vector data on a `DM` to a new `DM`
92669a2a23afSMatthew G. Knepley 
926720f4b53cSBarry Smith   Not Collective
92689a2a23afSMatthew G. Knepley 
92699a2a23afSMatthew G. Knepley   Input Parameter:
9270bb7acecfSBarry Smith . dm - The `DM`
92719a2a23afSMatthew G. Knepley 
92729a2a23afSMatthew G. Knepley   Output Parameter:
9273bb7acecfSBarry Smith . dmNew - The new `DM`, now with the same auxiliary data
92749a2a23afSMatthew G. Knepley 
92759a2a23afSMatthew G. Knepley   Level: advanced
92769a2a23afSMatthew G. Knepley 
9277bb7acecfSBarry Smith   Note:
9278bb7acecfSBarry Smith   This is a shallow copy of the auxiliary vectors
9279bb7acecfSBarry Smith 
9280e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`
92819a2a23afSMatthew G. Knepley @*/
9282d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyAuxiliaryVec(DM dm, DM dmNew)
9283d71ae5a4SJacob Faibussowitsch {
92849a2a23afSMatthew G. Knepley   PetscFunctionBegin;
92859a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9286d705d0eaSStefano Zampini   PetscValidHeaderSpecific(dmNew, DM_CLASSID, 2);
9287d705d0eaSStefano Zampini   if (dm == dmNew) PetscFunctionReturn(PETSC_SUCCESS);
9288e4d5475eSStefano Zampini   PetscCall(DMClearAuxiliaryVec(dmNew));
9289e4d5475eSStefano Zampini 
9290e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxDestroy(&dmNew->auxData));
92919566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxDuplicate(dm->auxData, &dmNew->auxData));
9292d705d0eaSStefano Zampini   {
9293d705d0eaSStefano Zampini     Vec     *auxData;
9294d705d0eaSStefano Zampini     PetscInt n, i, off = 0;
9295d705d0eaSStefano Zampini 
9296d705d0eaSStefano Zampini     PetscCall(PetscHMapAuxGetSize(dmNew->auxData, &n));
9297d705d0eaSStefano Zampini     PetscCall(PetscMalloc1(n, &auxData));
9298d705d0eaSStefano Zampini     PetscCall(PetscHMapAuxGetVals(dmNew->auxData, &off, auxData));
9299d705d0eaSStefano Zampini     for (i = 0; i < n; ++i) PetscCall(PetscObjectReference((PetscObject)auxData[i]));
9300d705d0eaSStefano Zampini     PetscCall(PetscFree(auxData));
9301e4d5475eSStefano Zampini   }
9302e4d5475eSStefano Zampini   PetscFunctionReturn(PETSC_SUCCESS);
9303e4d5475eSStefano Zampini }
9304e4d5475eSStefano Zampini 
9305e4d5475eSStefano Zampini /*@
9306e4d5475eSStefano Zampini   DMClearAuxiliaryVec - Destroys the auxiliary vector information and creates a new empty one
9307e4d5475eSStefano Zampini 
9308e4d5475eSStefano Zampini   Not Collective
9309e4d5475eSStefano Zampini 
9310e4d5475eSStefano Zampini   Input Parameter:
9311e4d5475eSStefano Zampini . dm - The `DM`
9312e4d5475eSStefano Zampini 
9313e4d5475eSStefano Zampini   Level: advanced
9314e4d5475eSStefano Zampini 
9315e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMCopyAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`
9316e4d5475eSStefano Zampini @*/
9317e4d5475eSStefano Zampini PetscErrorCode DMClearAuxiliaryVec(DM dm)
9318e4d5475eSStefano Zampini {
9319e4d5475eSStefano Zampini   Vec     *auxData;
9320e4d5475eSStefano Zampini   PetscInt n, i, off = 0;
9321e4d5475eSStefano Zampini 
9322e4d5475eSStefano Zampini   PetscFunctionBegin;
9323e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxGetSize(dm->auxData, &n));
9324d705d0eaSStefano Zampini   PetscCall(PetscMalloc1(n, &auxData));
9325e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxGetVals(dm->auxData, &off, auxData));
9326d705d0eaSStefano Zampini   for (i = 0; i < n; ++i) PetscCall(VecDestroy(&auxData[i]));
9327d705d0eaSStefano Zampini   PetscCall(PetscFree(auxData));
9328e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxDestroy(&dm->auxData));
9329e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxCreate(&dm->auxData));
93303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
93319a2a23afSMatthew G. Knepley }
9332b5a892a1SMatthew G. Knepley 
9333cc4c1da9SBarry Smith /*@
9334bb7acecfSBarry Smith   DMPolytopeMatchOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement
9335b5a892a1SMatthew G. Knepley 
933620f4b53cSBarry Smith   Not Collective
9337b5a892a1SMatthew G. Knepley 
9338b5a892a1SMatthew G. Knepley   Input Parameters:
9339bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9340b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces
9341b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces
9342b5a892a1SMatthew G. Knepley 
9343b5a892a1SMatthew G. Knepley   Output Parameters:
9344bb7acecfSBarry Smith + ornt  - The orientation (transformation) which will take the source arrangement to the target arrangement
9345b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found
9346b5a892a1SMatthew G. Knepley 
9347b5a892a1SMatthew G. Knepley   Level: advanced
9348b5a892a1SMatthew G. Knepley 
9349bb7acecfSBarry Smith   Note:
9350bb7acecfSBarry Smith   An arrangement is a face order combined with an orientation for each face
9351bb7acecfSBarry Smith 
935285036b15SMatthew G. Knepley   Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2
9353bb7acecfSBarry Smith   that labels each arrangement (face ordering plus orientation for each face).
9354bb7acecfSBarry Smith 
9355bb7acecfSBarry Smith   See `DMPolytopeMatchVertexOrientation()` to find a new vertex orientation that takes the source vertex arrangement to the target vertex arrangement
9356bb7acecfSBarry Smith 
93571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetVertexOrientation()`
9358b5a892a1SMatthew G. Knepley @*/
9359d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt, PetscBool *found)
9360d71ae5a4SJacob Faibussowitsch {
9361b5a892a1SMatthew G. Knepley   const PetscInt cS = DMPolytopeTypeGetConeSize(ct);
936285036b15SMatthew G. Knepley   const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2;
9363b5a892a1SMatthew G. Knepley   PetscInt       o, c;
9364b5a892a1SMatthew G. Knepley 
9365b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
93669371c9d4SSatish Balay   if (!nO) {
93679371c9d4SSatish Balay     *ornt  = 0;
93689371c9d4SSatish Balay     *found = PETSC_TRUE;
93693ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
93709371c9d4SSatish Balay   }
9371b5a892a1SMatthew G. Knepley   for (o = -nO; o < nO; ++o) {
937285036b15SMatthew G. Knepley     const PetscInt *arr = DMPolytopeTypeGetArrangement(ct, o);
9373b5a892a1SMatthew G. Knepley 
93749371c9d4SSatish Balay     for (c = 0; c < cS; ++c)
93759371c9d4SSatish Balay       if (sourceCone[arr[c * 2]] != targetCone[c]) break;
93769371c9d4SSatish Balay     if (c == cS) {
93779371c9d4SSatish Balay       *ornt = o;
93789371c9d4SSatish Balay       break;
93799371c9d4SSatish Balay     }
9380b5a892a1SMatthew G. Knepley   }
9381b5a892a1SMatthew G. Knepley   *found = o == nO ? PETSC_FALSE : PETSC_TRUE;
93823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9383b5a892a1SMatthew G. Knepley }
9384b5a892a1SMatthew G. Knepley 
9385cc4c1da9SBarry Smith /*@
9386bb7acecfSBarry Smith   DMPolytopeGetOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement
9387b5a892a1SMatthew G. Knepley 
938820f4b53cSBarry Smith   Not Collective
9389b5a892a1SMatthew G. Knepley 
9390b5a892a1SMatthew G. Knepley   Input Parameters:
9391bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9392b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces
9393b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces
9394b5a892a1SMatthew G. Knepley 
93952fe279fdSBarry Smith   Output Parameter:
9396bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement
9397b5a892a1SMatthew G. Knepley 
9398b5a892a1SMatthew G. Knepley   Level: advanced
9399b5a892a1SMatthew G. Knepley 
9400bb7acecfSBarry Smith   Note:
9401bb7acecfSBarry Smith   This function is the same as `DMPolytopeMatchOrientation()` except it will generate an error if no suitable orientation can be found.
9402bb7acecfSBarry Smith 
940373ff1848SBarry Smith   Developer Note:
9404bb7acecfSBarry Smith   It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchOrientation()` and error if none is found
9405bb7acecfSBarry Smith 
94061cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchOrientation()`, `DMPolytopeGetVertexOrientation()`, `DMPolytopeMatchVertexOrientation()`
9407b5a892a1SMatthew G. Knepley @*/
9408d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt)
9409d71ae5a4SJacob Faibussowitsch {
9410b5a892a1SMatthew G. Knepley   PetscBool found;
9411b5a892a1SMatthew G. Knepley 
9412b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
94139566063dSJacob Faibussowitsch   PetscCall(DMPolytopeMatchOrientation(ct, sourceCone, targetCone, ornt, &found));
94147a8be351SBarry Smith   PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]);
94153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9416b5a892a1SMatthew G. Knepley }
9417b5a892a1SMatthew G. Knepley 
9418cc4c1da9SBarry Smith /*@
9419bb7acecfSBarry Smith   DMPolytopeMatchVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement
9420b5a892a1SMatthew G. Knepley 
942120f4b53cSBarry Smith   Not Collective
9422b5a892a1SMatthew G. Knepley 
9423b5a892a1SMatthew G. Knepley   Input Parameters:
9424bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9425b5a892a1SMatthew G. Knepley . sourceVert - The source arrangement of vertices
9426b5a892a1SMatthew G. Knepley - targetVert - The target arrangement of vertices
9427b5a892a1SMatthew G. Knepley 
9428b5a892a1SMatthew G. Knepley   Output Parameters:
9429bb7acecfSBarry Smith + ornt  - The orientation (transformation) which will take the source arrangement to the target arrangement
9430b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found
9431b5a892a1SMatthew G. Knepley 
9432b5a892a1SMatthew G. Knepley   Level: advanced
9433b5a892a1SMatthew G. Knepley 
943473ff1848SBarry Smith   Notes:
9435bb7acecfSBarry Smith   An arrangement is a vertex order
9436bb7acecfSBarry Smith 
943785036b15SMatthew G. Knepley   Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2
9438bb7acecfSBarry Smith   that labels each arrangement (vertex ordering).
9439bb7acecfSBarry Smith 
9440bb7acecfSBarry Smith   See `DMPolytopeMatchOrientation()` to find a new face orientation that takes the source face arrangement to the target face arrangement
9441bb7acecfSBarry Smith 
944285036b15SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchOrientation()`, `DMPolytopeTypeGetNumVertices()`, `DMPolytopeTypeGetVertexArrangement()`
9443b5a892a1SMatthew G. Knepley @*/
9444d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchVertexOrientation(DMPolytopeType ct, const PetscInt sourceVert[], const PetscInt targetVert[], PetscInt *ornt, PetscBool *found)
9445d71ae5a4SJacob Faibussowitsch {
9446b5a892a1SMatthew G. Knepley   const PetscInt cS = DMPolytopeTypeGetNumVertices(ct);
944785036b15SMatthew G. Knepley   const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2;
9448b5a892a1SMatthew G. Knepley   PetscInt       o, c;
9449b5a892a1SMatthew G. Knepley 
9450b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
94519371c9d4SSatish Balay   if (!nO) {
94529371c9d4SSatish Balay     *ornt  = 0;
94539371c9d4SSatish Balay     *found = PETSC_TRUE;
94543ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
94559371c9d4SSatish Balay   }
9456b5a892a1SMatthew G. Knepley   for (o = -nO; o < nO; ++o) {
945785036b15SMatthew G. Knepley     const PetscInt *arr = DMPolytopeTypeGetVertexArrangement(ct, o);
9458b5a892a1SMatthew G. Knepley 
94599371c9d4SSatish Balay     for (c = 0; c < cS; ++c)
94609371c9d4SSatish Balay       if (sourceVert[arr[c]] != targetVert[c]) break;
94619371c9d4SSatish Balay     if (c == cS) {
94629371c9d4SSatish Balay       *ornt = o;
94639371c9d4SSatish Balay       break;
94649371c9d4SSatish Balay     }
9465b5a892a1SMatthew G. Knepley   }
9466b5a892a1SMatthew G. Knepley   *found = o == nO ? PETSC_FALSE : PETSC_TRUE;
94673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9468b5a892a1SMatthew G. Knepley }
9469b5a892a1SMatthew G. Knepley 
9470cc4c1da9SBarry Smith /*@
9471bb7acecfSBarry Smith   DMPolytopeGetVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement
9472b5a892a1SMatthew G. Knepley 
947320f4b53cSBarry Smith   Not Collective
9474b5a892a1SMatthew G. Knepley 
9475b5a892a1SMatthew G. Knepley   Input Parameters:
9476bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9477b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of vertices
9478b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of vertices
9479b5a892a1SMatthew G. Knepley 
94802fe279fdSBarry Smith   Output Parameter:
9481bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement
9482b5a892a1SMatthew G. Knepley 
9483b5a892a1SMatthew G. Knepley   Level: advanced
9484b5a892a1SMatthew G. Knepley 
9485bb7acecfSBarry Smith   Note:
9486bb7acecfSBarry Smith   This function is the same as `DMPolytopeMatchVertexOrientation()` except it errors if not orientation is possible.
9487bb7acecfSBarry Smith 
948873ff1848SBarry Smith   Developer Note:
9489bb7acecfSBarry Smith   It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchVertexOrientation()` and error if none is found
9490bb7acecfSBarry Smith 
94911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetOrientation()`
9492b5a892a1SMatthew G. Knepley @*/
9493d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetVertexOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt)
9494d71ae5a4SJacob Faibussowitsch {
9495b5a892a1SMatthew G. Knepley   PetscBool found;
9496b5a892a1SMatthew G. Knepley 
9497b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
94989566063dSJacob Faibussowitsch   PetscCall(DMPolytopeMatchVertexOrientation(ct, sourceCone, targetCone, ornt, &found));
94997a8be351SBarry Smith   PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]);
95003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9501b5a892a1SMatthew G. Knepley }
9502012bc364SMatthew G. Knepley 
9503cc4c1da9SBarry Smith /*@
9504012bc364SMatthew G. Knepley   DMPolytopeInCellTest - Check whether a point lies inside the reference cell of given type
9505012bc364SMatthew G. Knepley 
950620f4b53cSBarry Smith   Not Collective
9507012bc364SMatthew G. Knepley 
9508012bc364SMatthew G. Knepley   Input Parameters:
9509bb7acecfSBarry Smith + ct    - The `DMPolytopeType`
9510012bc364SMatthew G. Knepley - point - Coordinates of the point
9511012bc364SMatthew G. Knepley 
95122fe279fdSBarry Smith   Output Parameter:
9513012bc364SMatthew G. Knepley . inside - Flag indicating whether the point is inside the reference cell of given type
9514012bc364SMatthew G. Knepley 
9515012bc364SMatthew G. Knepley   Level: advanced
9516012bc364SMatthew G. Knepley 
95171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMLocatePoints()`
9518012bc364SMatthew G. Knepley @*/
9519d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeInCellTest(DMPolytopeType ct, const PetscReal point[], PetscBool *inside)
9520d71ae5a4SJacob Faibussowitsch {
9521012bc364SMatthew G. Knepley   PetscReal sum = 0.0;
9522012bc364SMatthew G. Knepley   PetscInt  d;
9523012bc364SMatthew G. Knepley 
9524012bc364SMatthew G. Knepley   PetscFunctionBegin;
9525012bc364SMatthew G. Knepley   *inside = PETSC_TRUE;
9526012bc364SMatthew G. Knepley   switch (ct) {
9527012bc364SMatthew G. Knepley   case DM_POLYTOPE_TRIANGLE:
9528012bc364SMatthew G. Knepley   case DM_POLYTOPE_TETRAHEDRON:
9529012bc364SMatthew G. Knepley     for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) {
95309371c9d4SSatish Balay       if (point[d] < -1.0) {
95319371c9d4SSatish Balay         *inside = PETSC_FALSE;
95329371c9d4SSatish Balay         break;
95339371c9d4SSatish Balay       }
9534012bc364SMatthew G. Knepley       sum += point[d];
9535012bc364SMatthew G. Knepley     }
95369371c9d4SSatish Balay     if (sum > PETSC_SMALL) {
95379371c9d4SSatish Balay       *inside = PETSC_FALSE;
95389371c9d4SSatish Balay       break;
95399371c9d4SSatish Balay     }
9540012bc364SMatthew G. Knepley     break;
9541012bc364SMatthew G. Knepley   case DM_POLYTOPE_QUADRILATERAL:
9542012bc364SMatthew G. Knepley   case DM_POLYTOPE_HEXAHEDRON:
9543012bc364SMatthew G. Knepley     for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d)
95449371c9d4SSatish Balay       if (PetscAbsReal(point[d]) > 1. + PETSC_SMALL) {
95459371c9d4SSatish Balay         *inside = PETSC_FALSE;
9546012bc364SMatthew G. Knepley         break;
95479371c9d4SSatish Balay       }
95489371c9d4SSatish Balay     break;
9549d71ae5a4SJacob Faibussowitsch   default:
9550d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported polytope type %s", DMPolytopeTypes[ct]);
9551012bc364SMatthew G. Knepley   }
95523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9553012bc364SMatthew G. Knepley }
9554adc21957SMatthew G. Knepley 
9555adc21957SMatthew G. Knepley /*@
9556adc21957SMatthew G. Knepley   DMReorderSectionSetDefault - Set flag indicating whether the local section should be reordered by default
9557adc21957SMatthew G. Knepley 
9558adc21957SMatthew G. Knepley   Logically collective
9559adc21957SMatthew G. Knepley 
9560adc21957SMatthew G. Knepley   Input Parameters:
9561adc21957SMatthew G. Knepley + dm      - The DM
9562adc21957SMatthew G. Knepley - reorder - Flag for reordering
9563adc21957SMatthew G. Knepley 
9564adc21957SMatthew G. Knepley   Level: intermediate
9565adc21957SMatthew G. Knepley 
9566adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetDefault()`
9567adc21957SMatthew G. Knepley @*/
9568adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetDefault(DM dm, DMReorderDefaultFlag reorder)
9569adc21957SMatthew G. Knepley {
9570adc21957SMatthew G. Knepley   PetscFunctionBegin;
9571adc21957SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9572adc21957SMatthew G. Knepley   PetscTryMethod(dm, "DMReorderSectionSetDefault_C", (DM, DMReorderDefaultFlag), (dm, reorder));
9573adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
9574adc21957SMatthew G. Knepley }
9575adc21957SMatthew G. Knepley 
9576adc21957SMatthew G. Knepley /*@
9577adc21957SMatthew G. Knepley   DMReorderSectionGetDefault - Get flag indicating whether the local section should be reordered by default
9578adc21957SMatthew G. Knepley 
9579adc21957SMatthew G. Knepley   Not collective
9580adc21957SMatthew G. Knepley 
9581adc21957SMatthew G. Knepley   Input Parameter:
9582adc21957SMatthew G. Knepley . dm - The DM
9583adc21957SMatthew G. Knepley 
9584adc21957SMatthew G. Knepley   Output Parameter:
9585adc21957SMatthew G. Knepley . reorder - Flag for reordering
9586adc21957SMatthew G. Knepley 
9587adc21957SMatthew G. Knepley   Level: intermediate
9588adc21957SMatthew G. Knepley 
9589adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()`
9590adc21957SMatthew G. Knepley @*/
9591adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetDefault(DM dm, DMReorderDefaultFlag *reorder)
9592adc21957SMatthew G. Knepley {
9593adc21957SMatthew G. Knepley   PetscFunctionBegin;
9594adc21957SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9595adc21957SMatthew G. Knepley   PetscAssertPointer(reorder, 2);
9596adc21957SMatthew G. Knepley   *reorder = DM_REORDER_DEFAULT_NOTSET;
9597adc21957SMatthew G. Knepley   PetscTryMethod(dm, "DMReorderSectionGetDefault_C", (DM, DMReorderDefaultFlag *), (dm, reorder));
9598adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
9599adc21957SMatthew G. Knepley }
9600adc21957SMatthew G. Knepley 
9601cc4c1da9SBarry Smith /*@
9602adc21957SMatthew G. Knepley   DMReorderSectionSetType - Set the type of local section reordering
9603adc21957SMatthew G. Knepley 
9604adc21957SMatthew G. Knepley   Logically collective
9605adc21957SMatthew G. Knepley 
9606adc21957SMatthew G. Knepley   Input Parameters:
9607adc21957SMatthew G. Knepley + dm      - The DM
9608adc21957SMatthew G. Knepley - reorder - The reordering method
9609adc21957SMatthew G. Knepley 
9610adc21957SMatthew G. Knepley   Level: intermediate
9611adc21957SMatthew G. Knepley 
9612adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetType()`, `DMReorderSectionSetDefault()`
9613adc21957SMatthew G. Knepley @*/
9614adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetType(DM dm, MatOrderingType reorder)
9615adc21957SMatthew G. Knepley {
9616adc21957SMatthew G. Knepley   PetscFunctionBegin;
9617adc21957SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9618adc21957SMatthew G. Knepley   PetscTryMethod(dm, "DMReorderSectionSetType_C", (DM, MatOrderingType), (dm, reorder));
9619adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
9620adc21957SMatthew G. Knepley }
9621adc21957SMatthew G. Knepley 
9622cc4c1da9SBarry Smith /*@
9623adc21957SMatthew G. Knepley   DMReorderSectionGetType - Get the reordering type for the local section
9624adc21957SMatthew G. Knepley 
9625adc21957SMatthew G. Knepley   Not collective
9626adc21957SMatthew G. Knepley 
9627adc21957SMatthew G. Knepley   Input Parameter:
9628adc21957SMatthew G. Knepley . dm - The DM
9629adc21957SMatthew G. Knepley 
9630adc21957SMatthew G. Knepley   Output Parameter:
9631adc21957SMatthew G. Knepley . reorder - The reordering method
9632adc21957SMatthew G. Knepley 
9633adc21957SMatthew G. Knepley   Level: intermediate
9634adc21957SMatthew G. Knepley 
9635adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()`, `DMReorderSectionGetDefault()`
9636adc21957SMatthew G. Knepley @*/
9637adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetType(DM dm, MatOrderingType *reorder)
9638adc21957SMatthew G. Knepley {
9639adc21957SMatthew G. Knepley   PetscFunctionBegin;
9640adc21957SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9641adc21957SMatthew G. Knepley   PetscAssertPointer(reorder, 2);
9642adc21957SMatthew G. Knepley   *reorder = NULL;
9643adc21957SMatthew G. Knepley   PetscTryMethod(dm, "DMReorderSectionGetType_C", (DM, MatOrderingType *), (dm, reorder));
9644adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
9645adc21957SMatthew G. Knepley }
9646