xref: /petsc/src/dm/interface/dm.c (revision d8b4a0667a1b407f3333490918f86a8a6bfb26b1)
1d0295fc0SJunchao Zhang #include <petscvec.h>
2af0996ceSBarry Smith #include <petsc/private/dmimpl.h>      /*I      "petscdm.h"          I*/
3c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I      "petscdmlabel.h"     I*/
4e6f8dbb6SToby Isaac #include <petsc/private/petscdsimpl.h> /*I      "petscds.h"     I*/
53e922f36SToby Isaac #include <petscdmplex.h>
6d2b2dc1eSMatthew G. Knepley #include <petscdmceed.h>
7f19dbd58SToby Isaac #include <petscdmfield.h>
80c312b8eSJed Brown #include <petscsf.h>
92764a2aaSMatthew G. Knepley #include <petscds.h>
1047c6ae99SBarry Smith 
11f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED
12f918ec44SMatthew G. Knepley   #include <petscfeceed.h>
13f918ec44SMatthew G. Knepley #endif
14f918ec44SMatthew G. Knepley 
15cea3dcb8SSatish Balay #if !defined(PETSC_HAVE_WINDOWS_COMPILERS)
16cea3dcb8SSatish Balay   #include <petsc/private/valgrind/memcheck.h>
1700d952a4SJed Brown #endif
1800d952a4SJed Brown 
19732e2eb9SMatthew G Knepley PetscClassId DM_CLASSID;
20d67d17b1SMatthew G. Knepley PetscClassId DMLABEL_CLASSID;
21708be2fdSJed Brown PetscLogEvent DM_Convert, DM_GlobalToLocal, DM_LocalToGlobal, DM_LocalToLocal, DM_LocatePoints, DM_Coarsen, DM_Refine, DM_CreateInterpolation, DM_CreateRestriction, DM_CreateInjection, DM_CreateMatrix, DM_CreateMassMatrix, DM_Load, DM_AdaptInterpolator, DM_ProjectFunction;
2267a56275SMatthew G Knepley 
23ea78f98cSLisandro Dalcin const char *const DMBoundaryTypes[]          = {"NONE", "GHOSTED", "MIRROR", "PERIODIC", "TWIST", "DMBoundaryType", "DM_BOUNDARY_", NULL};
24d1b3049bSMatthew G. Knepley const char *const DMBoundaryConditionTypes[] = {"INVALID", "ESSENTIAL", "NATURAL", "INVALID", "INVALID", "ESSENTIAL_FIELD", "NATURAL_FIELD", "INVALID", "INVALID", "ESSENTIAL_BD_FIELD", "NATURAL_RIEMANN", "DMBoundaryConditionType", "DM_BC_", NULL};
250e762ea3SJed Brown const char *const DMBlockingTypes[]          = {"TOPOLOGICAL_POINT", "FIELD_NODE", "DMBlockingType", "DM_BLOCKING_", NULL};
26476787b7SMatthew G. Knepley const char *const DMPolytopeTypes[] =
27476787b7SMatthew G. Knepley   {"vertex",  "segment",      "tensor_segment", "triangle", "quadrilateral",  "tensor_quad",  "tetrahedron", "hexahedron", "triangular_prism", "tensor_triangular_prism", "tensor_quadrilateral_prism", "pyramid", "FV_ghost_cell", "interior_ghost_cell",
28476787b7SMatthew G. Knepley    "unknown", "unknown_cell", "unknown_face",   "invalid",  "DMPolytopeType", "DM_POLYTOPE_", NULL};
292cbb9b06SVaclav Hapla const char *const DMCopyLabelsModes[] = {"replace", "keep", "fail", "DMCopyLabelsMode", "DM_COPY_LABELS_", NULL};
3060c22052SBarry Smith 
31a4121054SBarry Smith /*@
32bb7acecfSBarry Smith   DMCreate - Creates an empty `DM` object. `DM`s are the abstract objects in PETSc that mediate between meshes and discretizations and the
33bb7acecfSBarry Smith   algebraic solvers, time integrators, and optimization algorithms.
34a4121054SBarry Smith 
35d083f849SBarry Smith   Collective
36a4121054SBarry Smith 
37a4121054SBarry Smith   Input Parameter:
38bb7acecfSBarry Smith . comm - The communicator for the `DM` object
39a4121054SBarry Smith 
40a4121054SBarry Smith   Output Parameter:
41bb7acecfSBarry Smith . dm - The `DM` object
42a4121054SBarry Smith 
43a4121054SBarry Smith   Level: beginner
44a4121054SBarry Smith 
45bb7acecfSBarry Smith   Notes:
46bb7acecfSBarry Smith   See `DMType` for a brief summary of available `DM`.
47bb7acecfSBarry Smith 
48bb7acecfSBarry Smith   The type must then be set with `DMSetType()`. If you never call `DMSetType()` it will generate an
49bb7acecfSBarry Smith   error when you try to use the dm.
50bb7acecfSBarry Smith 
511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMType`, `DMDACreate()`, `DMDA`, `DMSLICED`, `DMCOMPOSITE`, `DMPLEX`, `DMMOAB`, `DMNETWORK`
52a4121054SBarry Smith @*/
53d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreate(MPI_Comm comm, DM *dm)
54d71ae5a4SJacob Faibussowitsch {
55a4121054SBarry Smith   DM      v;
56e5e52638SMatthew G. Knepley   PetscDS ds;
57a4121054SBarry Smith 
58a4121054SBarry Smith   PetscFunctionBegin;
594f572ea9SToby Isaac   PetscAssertPointer(dm, 2);
600298fd71SBarry Smith   *dm = NULL;
619566063dSJacob Faibussowitsch   PetscCall(DMInitializePackage());
62a4121054SBarry Smith 
639566063dSJacob Faibussowitsch   PetscCall(PetscHeaderCreate(v, DM_CLASSID, "DM", "Distribution Manager", "DM", comm, DMDestroy, DMView));
64e7c4fc90SDmitry Karpeev 
6562e5d2d2SJDBetteridge   ((PetscObject)v)->non_cyclic_references = &DMCountNonCyclicReferences;
6662e5d2d2SJDBetteridge 
6749be4549SMatthew G. Knepley   v->setupcalled          = PETSC_FALSE;
6849be4549SMatthew G. Knepley   v->setfromoptionscalled = PETSC_FALSE;
690298fd71SBarry Smith   v->ltogmap              = NULL;
70a4ea9b21SRichard Tran Mills   v->bind_below           = 0;
711411c6eeSJed Brown   v->bs                   = 1;
72171400e9SBarry Smith   v->coloringtype         = IS_COLORING_GLOBAL;
739566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &v->sf));
749566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &v->sectionSF));
75c58f1c22SToby Isaac   v->labels                    = NULL;
7634aa8a36SMatthew G. Knepley   v->adjacency[0]              = PETSC_FALSE;
7734aa8a36SMatthew G. Knepley   v->adjacency[1]              = PETSC_TRUE;
78c58f1c22SToby Isaac   v->depthLabel                = NULL;
79ba2698f1SMatthew G. Knepley   v->celltypeLabel             = NULL;
801bb6d2a8SBarry Smith   v->localSection              = NULL;
811bb6d2a8SBarry Smith   v->globalSection             = NULL;
823b8ba7d1SJed Brown   v->defaultConstraint.section = NULL;
833b8ba7d1SJed Brown   v->defaultConstraint.mat     = NULL;
8479769bd5SJed Brown   v->defaultConstraint.bias    = NULL;
856858538eSMatthew G. Knepley   v->coordinates[0].dim        = PETSC_DEFAULT;
866858538eSMatthew G. Knepley   v->coordinates[1].dim        = PETSC_DEFAULT;
876858538eSMatthew G. Knepley   v->sparseLocalize            = PETSC_TRUE;
8896173672SStefano Zampini   v->dim                       = PETSC_DETERMINE;
89435a35e8SMatthew G Knepley   {
90435a35e8SMatthew G Knepley     PetscInt i;
91435a35e8SMatthew G Knepley     for (i = 0; i < 10; ++i) {
920298fd71SBarry Smith       v->nullspaceConstructors[i]     = NULL;
93f9d4088aSMatthew G. Knepley       v->nearnullspaceConstructors[i] = NULL;
94435a35e8SMatthew G Knepley     }
95435a35e8SMatthew G Knepley   }
969566063dSJacob Faibussowitsch   PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds));
9707218a29SMatthew G. Knepley   PetscCall(DMSetRegionDS(v, NULL, NULL, ds, NULL));
989566063dSJacob Faibussowitsch   PetscCall(PetscDSDestroy(&ds));
999566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxCreate(&v->auxData));
10014f150ffSMatthew G. Knepley   v->dmBC              = NULL;
101a8fb8f29SToby Isaac   v->coarseMesh        = NULL;
102f4d763aaSMatthew G. Knepley   v->outputSequenceNum = -1;
103cdb7a50dSMatthew G. Knepley   v->outputSequenceVal = 0.0;
1049566063dSJacob Faibussowitsch   PetscCall(DMSetVecType(v, VECSTANDARD));
1059566063dSJacob Faibussowitsch   PetscCall(DMSetMatType(v, MATAIJ));
1064a7a4c06SLawrence Mitchell 
1071411c6eeSJed Brown   *dm = v;
1083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
109a4121054SBarry Smith }
110a4121054SBarry Smith 
11138221697SMatthew G. Knepley /*@
112bb7acecfSBarry Smith   DMClone - Creates a `DM` object with the same topology as the original.
11338221697SMatthew G. Knepley 
114d083f849SBarry Smith   Collective
11538221697SMatthew G. Knepley 
11638221697SMatthew G. Knepley   Input Parameter:
117bb7acecfSBarry Smith . dm - The original `DM` object
11838221697SMatthew G. Knepley 
11938221697SMatthew G. Knepley   Output Parameter:
120bb7acecfSBarry Smith . newdm - The new `DM` object
12138221697SMatthew G. Knepley 
12238221697SMatthew G. Knepley   Level: beginner
12338221697SMatthew G. Knepley 
1241cb8cacdSPatrick Sanan   Notes:
125bb7acecfSBarry Smith   For some `DM` implementations this is a shallow clone, the result of which may share (reference counted) information with its parent. For example,
126bb7acecfSBarry Smith   `DMClone()` applied to a `DMPLEX` object will result in a new `DMPLEX` that shares the topology with the original `DMPLEX`. It does not
127bb7acecfSBarry Smith   share the `PetscSection` of the original `DM`.
1281bb6d2a8SBarry Smith 
129bb7acecfSBarry Smith   The clone is considered set up if the original has been set up.
13089706ed2SPatrick Sanan 
131bb7acecfSBarry Smith   Use `DMConvert()` for a general way to create new `DM` from a given `DM`
132bb7acecfSBarry Smith 
13360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMSetType()`, `DMSetLocalSection()`, `DMSetGlobalSection()`, `DMPLEX`, `DMConvert()`
13438221697SMatthew G. Knepley @*/
135d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClone(DM dm, DM *newdm)
136d71ae5a4SJacob Faibussowitsch {
13738221697SMatthew G. Knepley   PetscSF              sf;
13838221697SMatthew G. Knepley   Vec                  coords;
13938221697SMatthew G. Knepley   void                *ctx;
140ec196627SMatthew G. Knepley   MatOrderingType      otype;
141ec196627SMatthew G. Knepley   DMReorderDefaultFlag flg;
1426858538eSMatthew G. Knepley   PetscInt             dim, cdim, i;
14338221697SMatthew G. Knepley 
14438221697SMatthew G. Knepley   PetscFunctionBegin;
14538221697SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1464f572ea9SToby Isaac   PetscAssertPointer(newdm, 2);
1479566063dSJacob Faibussowitsch   PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), newdm));
1489566063dSJacob Faibussowitsch   PetscCall(DMCopyLabels(dm, *newdm, PETSC_COPY_VALUES, PETSC_TRUE, DM_COPY_LABELS_FAIL));
149ddf8437dSMatthew G. Knepley   (*newdm)->leveldown     = dm->leveldown;
150ddf8437dSMatthew G. Knepley   (*newdm)->levelup       = dm->levelup;
151c8a6034eSMark   (*newdm)->prealloc_only = dm->prealloc_only;
152fc214432SJed Brown   (*newdm)->prealloc_skip = dm->prealloc_skip;
1539566063dSJacob Faibussowitsch   PetscCall(PetscFree((*newdm)->vectype));
1549566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*newdm)->vectype));
1559566063dSJacob Faibussowitsch   PetscCall(PetscFree((*newdm)->mattype));
1569566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*newdm)->mattype));
1579566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
1589566063dSJacob Faibussowitsch   PetscCall(DMSetDimension(*newdm, dim));
159dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, clone, newdm);
1603f22bcbcSToby Isaac   (*newdm)->setupcalled = dm->setupcalled;
1619566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sf));
1629566063dSJacob Faibussowitsch   PetscCall(DMSetPointSF(*newdm, sf));
1639566063dSJacob Faibussowitsch   PetscCall(DMGetApplicationContext(dm, &ctx));
1649566063dSJacob Faibussowitsch   PetscCall(DMSetApplicationContext(*newdm, ctx));
165ec196627SMatthew G. Knepley   PetscCall(DMReorderSectionGetDefault(dm, &flg));
166ec196627SMatthew G. Knepley   PetscCall(DMReorderSectionSetDefault(*newdm, flg));
167ec196627SMatthew G. Knepley   PetscCall(DMReorderSectionGetType(dm, &otype));
168ec196627SMatthew G. Knepley   PetscCall(DMReorderSectionSetType(*newdm, otype));
1696858538eSMatthew G. Knepley   for (i = 0; i < 2; ++i) {
1706858538eSMatthew G. Knepley     if (dm->coordinates[i].dm) {
171be4c1c3eSMatthew G. Knepley       DM           ncdm;
172be4c1c3eSMatthew G. Knepley       PetscSection cs;
1735a0206caSToby Isaac       PetscInt     pEnd = -1, pEndMax = -1;
174be4c1c3eSMatthew G. Knepley 
1756858538eSMatthew G. Knepley       PetscCall(DMGetLocalSection(dm->coordinates[i].dm, &cs));
1769566063dSJacob Faibussowitsch       if (cs) PetscCall(PetscSectionGetChart(cs, NULL, &pEnd));
177712fec58SPierre Jolivet       PetscCall(MPIU_Allreduce(&pEnd, &pEndMax, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm)));
1785a0206caSToby Isaac       if (pEndMax >= 0) {
1796858538eSMatthew G. Knepley         PetscCall(DMClone(dm->coordinates[i].dm, &ncdm));
1806858538eSMatthew G. Knepley         PetscCall(DMCopyDisc(dm->coordinates[i].dm, ncdm));
1819566063dSJacob Faibussowitsch         PetscCall(DMSetLocalSection(ncdm, cs));
1826858538eSMatthew G. Knepley         if (i) PetscCall(DMSetCellCoordinateDM(*newdm, ncdm));
1836858538eSMatthew G. Knepley         else PetscCall(DMSetCoordinateDM(*newdm, ncdm));
1849566063dSJacob Faibussowitsch         PetscCall(DMDestroy(&ncdm));
185be4c1c3eSMatthew G. Knepley       }
186be4c1c3eSMatthew G. Knepley     }
1876858538eSMatthew G. Knepley   }
1889566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
1899566063dSJacob Faibussowitsch   PetscCall(DMSetCoordinateDim(*newdm, cdim));
1909566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinatesLocal(dm, &coords));
19138221697SMatthew G. Knepley   if (coords) {
1929566063dSJacob Faibussowitsch     PetscCall(DMSetCoordinatesLocal(*newdm, coords));
19338221697SMatthew G. Knepley   } else {
1949566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinates(dm, &coords));
1959566063dSJacob Faibussowitsch     if (coords) PetscCall(DMSetCoordinates(*newdm, coords));
19638221697SMatthew G. Knepley   }
1976858538eSMatthew G. Knepley   PetscCall(DMGetCellCoordinatesLocal(dm, &coords));
1986858538eSMatthew G. Knepley   if (coords) {
1996858538eSMatthew G. Knepley     PetscCall(DMSetCellCoordinatesLocal(*newdm, coords));
2006858538eSMatthew G. Knepley   } else {
2016858538eSMatthew G. Knepley     PetscCall(DMGetCellCoordinates(dm, &coords));
2026858538eSMatthew G. Knepley     if (coords) PetscCall(DMSetCellCoordinates(*newdm, coords));
2036858538eSMatthew G. Knepley   }
20490b157c4SStefano Zampini   {
2054fb89dddSMatthew G. Knepley     const PetscReal *maxCell, *Lstart, *L;
2066858538eSMatthew G. Knepley 
2074fb89dddSMatthew G. Knepley     PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
2084fb89dddSMatthew G. Knepley     PetscCall(DMSetPeriodicity(*newdm, maxCell, Lstart, L));
209c6b900c6SMatthew G. Knepley   }
21034aa8a36SMatthew G. Knepley   {
21134aa8a36SMatthew G. Knepley     PetscBool useCone, useClosure;
21234aa8a36SMatthew G. Knepley 
2139566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, &useCone, &useClosure));
2149566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(*newdm, PETSC_DEFAULT, useCone, useClosure));
21534aa8a36SMatthew G. Knepley   }
2163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21738221697SMatthew G. Knepley }
21838221697SMatthew G. Knepley 
2199a42bb27SBarry Smith /*@C
220bb7acecfSBarry Smith   DMSetVecType - Sets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()`
2219a42bb27SBarry Smith 
22220f4b53cSBarry Smith   Logically Collective
2239a42bb27SBarry Smith 
224147403d9SBarry Smith   Input Parameters:
22532546409SMatthew G. Knepley + dm    - initial distributed array
226bb7acecfSBarry Smith - ctype - the vector type, for example `VECSTANDARD`, `VECCUDA`, or `VECVIENNACL`
2279a42bb27SBarry Smith 
22820f4b53cSBarry Smith   Options Database Key:
229147403d9SBarry Smith . -dm_vec_type ctype - the type of vector to create
2309a42bb27SBarry Smith 
2319a42bb27SBarry Smith   Level: intermediate
2329a42bb27SBarry Smith 
23360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMGetVecType()`, `DMSetMatType()`, `DMGetMatType()`,
234bb7acecfSBarry Smith           `VECSTANDARD`, `VECCUDA`, `VECVIENNACL`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`
2359a42bb27SBarry Smith @*/
23632546409SMatthew G. Knepley PetscErrorCode DMSetVecType(DM dm, VecType ctype)
237d71ae5a4SJacob Faibussowitsch {
23832546409SMatthew G. Knepley   char *tmp;
23932546409SMatthew G. Knepley 
2409a42bb27SBarry Smith   PetscFunctionBegin;
24132546409SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
24232546409SMatthew G. Knepley   PetscAssertPointer(ctype, 2);
24332546409SMatthew G. Knepley   tmp = (char *)dm->vectype;
24432546409SMatthew G. Knepley   PetscCall(PetscStrallocpy(ctype, (char **)&dm->vectype));
24532546409SMatthew G. Knepley   PetscCall(PetscFree(tmp));
2463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2479a42bb27SBarry Smith }
2489a42bb27SBarry Smith 
249c0dedaeaSBarry Smith /*@C
250bb7acecfSBarry Smith   DMGetVecType - Gets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()`
251c0dedaeaSBarry Smith 
25220f4b53cSBarry Smith   Logically Collective
253c0dedaeaSBarry Smith 
254c0dedaeaSBarry Smith   Input Parameter:
255c0dedaeaSBarry Smith . da - initial distributed array
256c0dedaeaSBarry Smith 
257c0dedaeaSBarry Smith   Output Parameter:
258c0dedaeaSBarry Smith . ctype - the vector type
259c0dedaeaSBarry Smith 
260c0dedaeaSBarry Smith   Level: intermediate
261c0dedaeaSBarry Smith 
26260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMSetMatType()`, `DMGetMatType()`, `DMSetVecType()`
263c0dedaeaSBarry Smith @*/
264d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetVecType(DM da, VecType *ctype)
265d71ae5a4SJacob Faibussowitsch {
266c0dedaeaSBarry Smith   PetscFunctionBegin;
267c0dedaeaSBarry Smith   PetscValidHeaderSpecific(da, DM_CLASSID, 1);
268c0dedaeaSBarry Smith   *ctype = da->vectype;
2693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
270c0dedaeaSBarry Smith }
271c0dedaeaSBarry Smith 
2725f1ad066SMatthew G Knepley /*@
273bb7acecfSBarry Smith   VecGetDM - Gets the `DM` defining the data layout of the vector
2745f1ad066SMatthew G Knepley 
27520f4b53cSBarry Smith   Not Collective
2765f1ad066SMatthew G Knepley 
2775f1ad066SMatthew G Knepley   Input Parameter:
278bb7acecfSBarry Smith . v - The `Vec`
2795f1ad066SMatthew G Knepley 
2805f1ad066SMatthew G Knepley   Output Parameter:
281bb7acecfSBarry Smith . dm - The `DM`
2825f1ad066SMatthew G Knepley 
2835f1ad066SMatthew G Knepley   Level: intermediate
2845f1ad066SMatthew G Knepley 
285bb7acecfSBarry Smith   Note:
286bb7acecfSBarry Smith   A `Vec` may not have a `DM` associated with it.
287bb7acecfSBarry Smith 
2881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecSetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()`
2895f1ad066SMatthew G Knepley @*/
290d71ae5a4SJacob Faibussowitsch PetscErrorCode VecGetDM(Vec v, DM *dm)
291d71ae5a4SJacob Faibussowitsch {
2925f1ad066SMatthew G Knepley   PetscFunctionBegin;
2935f1ad066SMatthew G Knepley   PetscValidHeaderSpecific(v, VEC_CLASSID, 1);
2944f572ea9SToby Isaac   PetscAssertPointer(dm, 2);
2959566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)v, "__PETSc_dm", (PetscObject *)dm));
2963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2975f1ad066SMatthew G Knepley }
2985f1ad066SMatthew G Knepley 
2995f1ad066SMatthew G Knepley /*@
300bb7acecfSBarry Smith   VecSetDM - Sets the `DM` defining the data layout of the vector.
3015f1ad066SMatthew G Knepley 
30220f4b53cSBarry Smith   Not Collective
3035f1ad066SMatthew G Knepley 
3045f1ad066SMatthew G Knepley   Input Parameters:
305bb7acecfSBarry Smith + v  - The `Vec`
306bb7acecfSBarry Smith - dm - The `DM`
3075f1ad066SMatthew G Knepley 
30820f4b53cSBarry Smith   Level: developer
30920f4b53cSBarry Smith 
31073ff1848SBarry Smith   Notes:
311bb7acecfSBarry Smith   This is rarely used, generally one uses `DMGetLocalVector()` or  `DMGetGlobalVector()` to create a vector associated with a given `DM`
312d9805387SMatthew G. Knepley 
313bb7acecfSBarry Smith   This is NOT the same as `DMCreateGlobalVector()` since it does not change the view methods or perform other customization, but merely sets the `DM` member.
314bb7acecfSBarry Smith 
3151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecGetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()`
3165f1ad066SMatthew G Knepley @*/
317d71ae5a4SJacob Faibussowitsch PetscErrorCode VecSetDM(Vec v, DM dm)
318d71ae5a4SJacob Faibussowitsch {
3195f1ad066SMatthew G Knepley   PetscFunctionBegin;
3205f1ad066SMatthew G Knepley   PetscValidHeaderSpecific(v, VEC_CLASSID, 1);
321d7f50e27SLisandro Dalcin   if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2);
3229566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)v, "__PETSc_dm", (PetscObject)dm));
3233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3245f1ad066SMatthew G Knepley }
3255f1ad066SMatthew G Knepley 
326521d9a4cSLisandro Dalcin /*@C
327bb7acecfSBarry Smith   DMSetISColoringType - Sets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM`
3288f1509bcSBarry Smith 
32920f4b53cSBarry Smith   Logically Collective
3308f1509bcSBarry Smith 
3318f1509bcSBarry Smith   Input Parameters:
332bb7acecfSBarry Smith + dm    - the `DM` context
3338f1509bcSBarry Smith - ctype - the matrix type
3348f1509bcSBarry Smith 
33520f4b53cSBarry Smith   Options Database Key:
3368f1509bcSBarry Smith . -dm_is_coloring_type - global or local
3378f1509bcSBarry Smith 
3388f1509bcSBarry Smith   Level: intermediate
3398f1509bcSBarry Smith 
3401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`,
341bb7acecfSBarry Smith           `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL`
3428f1509bcSBarry Smith @*/
343d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetISColoringType(DM dm, ISColoringType ctype)
344d71ae5a4SJacob Faibussowitsch {
3458f1509bcSBarry Smith   PetscFunctionBegin;
3468f1509bcSBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3478f1509bcSBarry Smith   dm->coloringtype = ctype;
3483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3498f1509bcSBarry Smith }
3508f1509bcSBarry Smith 
3518f1509bcSBarry Smith /*@C
352bb7acecfSBarry Smith   DMGetISColoringType - Gets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM`
353521d9a4cSLisandro Dalcin 
35420f4b53cSBarry Smith   Logically Collective
355521d9a4cSLisandro Dalcin 
356521d9a4cSLisandro Dalcin   Input Parameter:
357bb7acecfSBarry Smith . dm - the `DM` context
3588f1509bcSBarry Smith 
3598f1509bcSBarry Smith   Output Parameter:
3608f1509bcSBarry Smith . ctype - the matrix type
3618f1509bcSBarry Smith 
36220f4b53cSBarry Smith   Options Database Key:
3638f1509bcSBarry Smith . -dm_is_coloring_type - global or local
3648f1509bcSBarry Smith 
3658f1509bcSBarry Smith   Level: intermediate
3668f1509bcSBarry Smith 
3671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`,
36842747ad1SJacob Faibussowitsch           `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL`
3698f1509bcSBarry Smith @*/
370d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetISColoringType(DM dm, ISColoringType *ctype)
371d71ae5a4SJacob Faibussowitsch {
3728f1509bcSBarry Smith   PetscFunctionBegin;
3738f1509bcSBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3748f1509bcSBarry Smith   *ctype = dm->coloringtype;
3753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3768f1509bcSBarry Smith }
3778f1509bcSBarry Smith 
3788f1509bcSBarry Smith /*@C
379bb7acecfSBarry Smith   DMSetMatType - Sets the type of matrix created with `DMCreateMatrix()`
3808f1509bcSBarry Smith 
38120f4b53cSBarry Smith   Logically Collective
3828f1509bcSBarry Smith 
3838f1509bcSBarry Smith   Input Parameters:
384bb7acecfSBarry Smith + dm    - the `DM` context
385bb7acecfSBarry Smith - ctype - the matrix type, for example `MATMPIAIJ`
386521d9a4cSLisandro Dalcin 
38720f4b53cSBarry Smith   Options Database Key:
388bb7acecfSBarry Smith . -dm_mat_type ctype - the type of the matrix to create, for example mpiaij
389521d9a4cSLisandro Dalcin 
390521d9a4cSLisandro Dalcin   Level: intermediate
391521d9a4cSLisandro Dalcin 
39242747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatType`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMGetMatType()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()`
393521d9a4cSLisandro Dalcin @*/
394d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatType(DM dm, MatType ctype)
395d71ae5a4SJacob Faibussowitsch {
39632546409SMatthew G. Knepley   char *tmp;
39732546409SMatthew G. Knepley 
398521d9a4cSLisandro Dalcin   PetscFunctionBegin;
399521d9a4cSLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
40032546409SMatthew G. Knepley   PetscAssertPointer(ctype, 2);
40132546409SMatthew G. Knepley   tmp = (char *)dm->mattype;
4029566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(ctype, (char **)&dm->mattype));
40332546409SMatthew G. Knepley   PetscCall(PetscFree(tmp));
4043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
405521d9a4cSLisandro Dalcin }
406521d9a4cSLisandro Dalcin 
407c0dedaeaSBarry Smith /*@C
40820f4b53cSBarry Smith   DMGetMatType - Gets the type of matrix that would be created with `DMCreateMatrix()`
409c0dedaeaSBarry Smith 
41020f4b53cSBarry Smith   Logically Collective
411c0dedaeaSBarry Smith 
412c0dedaeaSBarry Smith   Input Parameter:
413bb7acecfSBarry Smith . dm - the `DM` context
414c0dedaeaSBarry Smith 
415c0dedaeaSBarry Smith   Output Parameter:
416c0dedaeaSBarry Smith . ctype - the matrix type
417c0dedaeaSBarry Smith 
418c0dedaeaSBarry Smith   Level: intermediate
419c0dedaeaSBarry Smith 
42042747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMSetMatType()`
421c0dedaeaSBarry Smith @*/
422d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetMatType(DM dm, MatType *ctype)
423d71ae5a4SJacob Faibussowitsch {
424c0dedaeaSBarry Smith   PetscFunctionBegin;
425c0dedaeaSBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
426c0dedaeaSBarry Smith   *ctype = dm->mattype;
4273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
428c0dedaeaSBarry Smith }
429c0dedaeaSBarry Smith 
430c688c046SMatthew G Knepley /*@
431bb7acecfSBarry Smith   MatGetDM - Gets the `DM` defining the data layout of the matrix
432c688c046SMatthew G Knepley 
43320f4b53cSBarry Smith   Not Collective
434c688c046SMatthew G Knepley 
435c688c046SMatthew G Knepley   Input Parameter:
436bb7acecfSBarry Smith . A - The `Mat`
437c688c046SMatthew G Knepley 
438c688c046SMatthew G Knepley   Output Parameter:
439bb7acecfSBarry Smith . dm - The `DM`
440c688c046SMatthew G Knepley 
441c688c046SMatthew G Knepley   Level: intermediate
442c688c046SMatthew G Knepley 
443bb7acecfSBarry Smith   Note:
444bb7acecfSBarry Smith   A matrix may not have a `DM` associated with it
445bb7acecfSBarry Smith 
44673ff1848SBarry Smith   Developer Note:
447bb7acecfSBarry Smith   Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with the `Mat` through a `PetscObjectCompose()` operation
4488f1509bcSBarry Smith 
4491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatSetDM()`, `DMCreateMatrix()`, `DMSetMatType()`
450c688c046SMatthew G Knepley @*/
451d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDM(Mat A, DM *dm)
452d71ae5a4SJacob Faibussowitsch {
453c688c046SMatthew G Knepley   PetscFunctionBegin;
454c688c046SMatthew G Knepley   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
4554f572ea9SToby Isaac   PetscAssertPointer(dm, 2);
4569566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_dm", (PetscObject *)dm));
4573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
458c688c046SMatthew G Knepley }
459c688c046SMatthew G Knepley 
460c688c046SMatthew G Knepley /*@
461bb7acecfSBarry Smith   MatSetDM - Sets the `DM` defining the data layout of the matrix
462c688c046SMatthew G Knepley 
46320f4b53cSBarry Smith   Not Collective
464c688c046SMatthew G Knepley 
465c688c046SMatthew G Knepley   Input Parameters:
46620f4b53cSBarry Smith + A  - The `Mat`
46720f4b53cSBarry Smith - dm - The `DM`
468c688c046SMatthew G Knepley 
469bb7acecfSBarry Smith   Level: developer
470c688c046SMatthew G Knepley 
471bb7acecfSBarry Smith   Note:
472bb7acecfSBarry Smith   This is rarely used in practice, rather `DMCreateMatrix()` is used to create a matrix associated with a particular `DM`
473bb7acecfSBarry Smith 
47473ff1848SBarry Smith   Developer Note:
475bb7acecfSBarry Smith   Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with
476bb7acecfSBarry Smith   the `Mat` through a `PetscObjectCompose()` operation
4778f1509bcSBarry Smith 
4781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatGetDM()`, `DMCreateMatrix()`, `DMSetMatType()`
479c688c046SMatthew G Knepley @*/
480d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetDM(Mat A, DM dm)
481d71ae5a4SJacob Faibussowitsch {
482c688c046SMatthew G Knepley   PetscFunctionBegin;
483c688c046SMatthew G Knepley   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
4848865f1eaSKarl Rupp   if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2);
4859566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_dm", (PetscObject)dm));
4863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
487c688c046SMatthew G Knepley }
488c688c046SMatthew G Knepley 
4899a42bb27SBarry Smith /*@C
490bb7acecfSBarry Smith   DMSetOptionsPrefix - Sets the prefix prepended to all option names when searching through the options database
4919a42bb27SBarry Smith 
49220f4b53cSBarry Smith   Logically Collective
4939a42bb27SBarry Smith 
494d8d19677SJose E. Roman   Input Parameters:
49560225df5SJacob Faibussowitsch + dm     - the `DM` context
496bb7acecfSBarry Smith - prefix - the prefix to prepend
4979a42bb27SBarry Smith 
49820f4b53cSBarry Smith   Level: advanced
49920f4b53cSBarry Smith 
50020f4b53cSBarry Smith   Note:
5019a42bb27SBarry Smith   A hyphen (-) must NOT be given at the beginning of the prefix name.
5029a42bb27SBarry Smith   The first character of all runtime options is AUTOMATICALLY the hyphen.
5039a42bb27SBarry Smith 
5041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscObjectSetOptionsPrefix()`, `DMSetFromOptions()`
5059a42bb27SBarry Smith @*/
506d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOptionsPrefix(DM dm, const char prefix[])
507d71ae5a4SJacob Faibussowitsch {
5089a42bb27SBarry Smith   PetscFunctionBegin;
5099a42bb27SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5109566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, prefix));
5111baa6e33SBarry Smith   if (dm->sf) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sf, prefix));
5121baa6e33SBarry Smith   if (dm->sectionSF) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sectionSF, prefix));
5133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5149a42bb27SBarry Smith }
5159a42bb27SBarry Smith 
51631697293SDave May /*@C
517da81f932SPierre Jolivet   DMAppendOptionsPrefix - Appends an additional string to an already existing prefix used for searching for
518bb7acecfSBarry Smith   `DM` options in the options database.
51931697293SDave May 
52020f4b53cSBarry Smith   Logically Collective
52131697293SDave May 
52231697293SDave May   Input Parameters:
523bb7acecfSBarry Smith + dm     - the `DM` context
524bb7acecfSBarry Smith - prefix - the string to append to the current prefix
52531697293SDave May 
52620f4b53cSBarry Smith   Level: advanced
52720f4b53cSBarry Smith 
52820f4b53cSBarry Smith   Note:
529bb7acecfSBarry Smith   If the `DM` does not currently have an options prefix then this value is used alone as the prefix as if `DMSetOptionsPrefix()` had been called.
53031697293SDave May   A hyphen (-) must NOT be given at the beginning of the prefix name.
53131697293SDave May   The first character of all runtime options is AUTOMATICALLY the hyphen.
53231697293SDave May 
5331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMGetOptionsPrefix()`, `PetscObjectAppendOptionsPrefix()`, `DMSetFromOptions()`
53431697293SDave May @*/
535d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAppendOptionsPrefix(DM dm, const char prefix[])
536d71ae5a4SJacob Faibussowitsch {
53731697293SDave May   PetscFunctionBegin;
53831697293SDave May   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5399566063dSJacob Faibussowitsch   PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, prefix));
5403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
54131697293SDave May }
54231697293SDave May 
54331697293SDave May /*@C
54431697293SDave May   DMGetOptionsPrefix - Gets the prefix used for searching for all
545bb7acecfSBarry Smith   DM options in the options database.
54631697293SDave May 
54731697293SDave May   Not Collective
54831697293SDave May 
5492fe279fdSBarry Smith   Input Parameter:
550bb7acecfSBarry Smith . dm - the `DM` context
55131697293SDave May 
5522fe279fdSBarry Smith   Output Parameter:
55331697293SDave May . prefix - pointer to the prefix string used is returned
55431697293SDave May 
55531697293SDave May   Level: advanced
55631697293SDave May 
55773ff1848SBarry Smith   Fortran Note:
55820f4b53cSBarry Smith   Pass in a string 'prefix' of
55920f4b53cSBarry Smith   sufficient length to hold the prefix.
56020f4b53cSBarry Smith 
5611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMAppendOptionsPrefix()`, `DMSetFromOptions()`
56231697293SDave May @*/
563d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOptionsPrefix(DM dm, const char *prefix[])
564d71ae5a4SJacob Faibussowitsch {
56531697293SDave May   PetscFunctionBegin;
56631697293SDave May   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5679566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, prefix));
5683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56931697293SDave May }
57031697293SDave May 
57162e5d2d2SJDBetteridge static PetscErrorCode DMCountNonCyclicReferences_Internal(DM dm, PetscBool recurseCoarse, PetscBool recurseFine, PetscInt *ncrefct)
572d71ae5a4SJacob Faibussowitsch {
5736eb26441SStefano Zampini   PetscInt refct = ((PetscObject)dm)->refct;
57488bdff64SToby Isaac 
57588bdff64SToby Isaac   PetscFunctionBegin;
576aab5bcd8SJed Brown   *ncrefct = 0;
57788bdff64SToby Isaac   if (dm->coarseMesh && dm->coarseMesh->fineMesh == dm) {
57888bdff64SToby Isaac     refct--;
57988bdff64SToby Isaac     if (recurseCoarse) {
58088bdff64SToby Isaac       PetscInt coarseCount;
58188bdff64SToby Isaac 
58262e5d2d2SJDBetteridge       PetscCall(DMCountNonCyclicReferences_Internal(dm->coarseMesh, PETSC_TRUE, PETSC_FALSE, &coarseCount));
58388bdff64SToby Isaac       refct += coarseCount;
58488bdff64SToby Isaac     }
58588bdff64SToby Isaac   }
58688bdff64SToby Isaac   if (dm->fineMesh && dm->fineMesh->coarseMesh == dm) {
58788bdff64SToby Isaac     refct--;
58888bdff64SToby Isaac     if (recurseFine) {
58988bdff64SToby Isaac       PetscInt fineCount;
59088bdff64SToby Isaac 
59162e5d2d2SJDBetteridge       PetscCall(DMCountNonCyclicReferences_Internal(dm->fineMesh, PETSC_FALSE, PETSC_TRUE, &fineCount));
59288bdff64SToby Isaac       refct += fineCount;
59388bdff64SToby Isaac     }
59488bdff64SToby Isaac   }
59588bdff64SToby Isaac   *ncrefct = refct;
5963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
59788bdff64SToby Isaac }
59888bdff64SToby Isaac 
59962e5d2d2SJDBetteridge /* Generic wrapper for DMCountNonCyclicReferences_Internal() */
60062e5d2d2SJDBetteridge PetscErrorCode DMCountNonCyclicReferences(PetscObject dm, PetscInt *ncrefct)
60162e5d2d2SJDBetteridge {
60262e5d2d2SJDBetteridge   PetscFunctionBegin;
60362e5d2d2SJDBetteridge   PetscCall(DMCountNonCyclicReferences_Internal((DM)dm, PETSC_TRUE, PETSC_TRUE, ncrefct));
6043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
60562e5d2d2SJDBetteridge }
60662e5d2d2SJDBetteridge 
607d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyLabelLinkList_Internal(DM dm)
608d71ae5a4SJacob Faibussowitsch {
6095d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
610354557abSToby Isaac 
611354557abSToby Isaac   PetscFunctionBegin;
612354557abSToby Isaac   /* destroy the labels */
613354557abSToby Isaac   while (next) {
614354557abSToby Isaac     DMLabelLink tmp = next->next;
615354557abSToby Isaac 
6165d80c0bfSVaclav Hapla     if (next->label == dm->depthLabel) dm->depthLabel = NULL;
617ba2698f1SMatthew G. Knepley     if (next->label == dm->celltypeLabel) dm->celltypeLabel = NULL;
6189566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&next->label));
6199566063dSJacob Faibussowitsch     PetscCall(PetscFree(next));
620354557abSToby Isaac     next = tmp;
621354557abSToby Isaac   }
6225d80c0bfSVaclav Hapla   dm->labels = NULL;
6233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
624354557abSToby Isaac }
625354557abSToby Isaac 
62666976f2fSJacob Faibussowitsch static PetscErrorCode DMDestroyCoordinates_Private(DMCoordinates *c)
627d71ae5a4SJacob Faibussowitsch {
6286858538eSMatthew G. Knepley   PetscFunctionBegin;
6296858538eSMatthew G. Knepley   c->dim = PETSC_DEFAULT;
6306858538eSMatthew G. Knepley   PetscCall(DMDestroy(&c->dm));
6316858538eSMatthew G. Knepley   PetscCall(VecDestroy(&c->x));
6326858538eSMatthew G. Knepley   PetscCall(VecDestroy(&c->xl));
6336858538eSMatthew G. Knepley   PetscCall(DMFieldDestroy(&c->field));
6343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6356858538eSMatthew G. Knepley }
6366858538eSMatthew G. Knepley 
6371fb7b255SJunchao Zhang /*@C
638bb7acecfSBarry Smith   DMDestroy - Destroys a `DM`.
63947c6ae99SBarry Smith 
64020f4b53cSBarry Smith   Collective
64147c6ae99SBarry Smith 
64247c6ae99SBarry Smith   Input Parameter:
643bb7acecfSBarry Smith . dm - the `DM` object to destroy
64447c6ae99SBarry Smith 
64547c6ae99SBarry Smith   Level: developer
64647c6ae99SBarry Smith 
6471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMType`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
64847c6ae99SBarry Smith @*/
649d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroy(DM *dm)
650d71ae5a4SJacob Faibussowitsch {
6516eb26441SStefano Zampini   PetscInt cnt;
65247c6ae99SBarry Smith 
65347c6ae99SBarry Smith   PetscFunctionBegin;
6543ba16761SJacob Faibussowitsch   if (!*dm) PetscFunctionReturn(PETSC_SUCCESS);
655f4f49eeaSPierre Jolivet   PetscValidHeaderSpecific(*dm, DM_CLASSID, 1);
65687e657c6SBarry Smith 
65788bdff64SToby Isaac   /* count all non-cyclic references in the doubly-linked list of coarse<->fine meshes */
65862e5d2d2SJDBetteridge   PetscCall(DMCountNonCyclicReferences_Internal(*dm, PETSC_TRUE, PETSC_TRUE, &cnt));
659f4f49eeaSPierre Jolivet   --((PetscObject)*dm)->refct;
6609371c9d4SSatish Balay   if (--cnt > 0) {
6619371c9d4SSatish Balay     *dm = NULL;
6623ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
6639371c9d4SSatish Balay   }
664f4f49eeaSPierre Jolivet   if (((PetscObject)*dm)->refct < 0) PetscFunctionReturn(PETSC_SUCCESS);
665f4f49eeaSPierre Jolivet   ((PetscObject)*dm)->refct = 0;
6666eb26441SStefano Zampini 
6679566063dSJacob Faibussowitsch   PetscCall(DMClearGlobalVectors(*dm));
6689566063dSJacob Faibussowitsch   PetscCall(DMClearLocalVectors(*dm));
669974ca4ecSStefano Zampini   PetscCall(DMClearNamedGlobalVectors(*dm));
670974ca4ecSStefano Zampini   PetscCall(DMClearNamedLocalVectors(*dm));
6712348bcf4SPeter Brune 
672b17ce1afSJed Brown   /* Destroy the list of hooks */
673c833c3b5SJed Brown   {
674c833c3b5SJed Brown     DMCoarsenHookLink link, next;
675b17ce1afSJed Brown     for (link = (*dm)->coarsenhook; link; link = next) {
676b17ce1afSJed Brown       next = link->next;
6779566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
678b17ce1afSJed Brown     }
6790298fd71SBarry Smith     (*dm)->coarsenhook = NULL;
680c833c3b5SJed Brown   }
681c833c3b5SJed Brown   {
682c833c3b5SJed Brown     DMRefineHookLink link, next;
683c833c3b5SJed Brown     for (link = (*dm)->refinehook; link; link = next) {
684c833c3b5SJed Brown       next = link->next;
6859566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
686c833c3b5SJed Brown     }
6870298fd71SBarry Smith     (*dm)->refinehook = NULL;
688c833c3b5SJed Brown   }
689be081cd6SPeter Brune   {
690be081cd6SPeter Brune     DMSubDomainHookLink link, next;
691be081cd6SPeter Brune     for (link = (*dm)->subdomainhook; link; link = next) {
692be081cd6SPeter Brune       next = link->next;
6939566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
694be081cd6SPeter Brune     }
6950298fd71SBarry Smith     (*dm)->subdomainhook = NULL;
696be081cd6SPeter Brune   }
697baf369e7SPeter Brune   {
698baf369e7SPeter Brune     DMGlobalToLocalHookLink link, next;
699baf369e7SPeter Brune     for (link = (*dm)->gtolhook; link; link = next) {
700baf369e7SPeter Brune       next = link->next;
7019566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
702baf369e7SPeter Brune     }
7030298fd71SBarry Smith     (*dm)->gtolhook = NULL;
704baf369e7SPeter Brune   }
705d4d07f1eSToby Isaac   {
706d4d07f1eSToby Isaac     DMLocalToGlobalHookLink link, next;
707d4d07f1eSToby Isaac     for (link = (*dm)->ltoghook; link; link = next) {
708d4d07f1eSToby Isaac       next = link->next;
7099566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
710d4d07f1eSToby Isaac     }
711d4d07f1eSToby Isaac     (*dm)->ltoghook = NULL;
712d4d07f1eSToby Isaac   }
713aa1993deSMatthew G Knepley   /* Destroy the work arrays */
714aa1993deSMatthew G Knepley   {
715aa1993deSMatthew G Knepley     DMWorkLink link, next;
716936381afSPierre Jolivet     PetscCheck(!(*dm)->workout, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Work array still checked out %p %p", (void *)(*dm)->workout, (void *)(*dm)->workout->mem);
717aa1993deSMatthew G Knepley     for (link = (*dm)->workin; link; link = next) {
718aa1993deSMatthew G Knepley       next = link->next;
7199566063dSJacob Faibussowitsch       PetscCall(PetscFree(link->mem));
7209566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
721aa1993deSMatthew G Knepley     }
7220298fd71SBarry Smith     (*dm)->workin = NULL;
723aa1993deSMatthew G Knepley   }
724c58f1c22SToby Isaac   /* destroy the labels */
7259566063dSJacob Faibussowitsch   PetscCall(DMDestroyLabelLinkList_Internal(*dm));
726f4cdcedcSVaclav Hapla   /* destroy the fields */
7279566063dSJacob Faibussowitsch   PetscCall(DMClearFields(*dm));
728f4cdcedcSVaclav Hapla   /* destroy the boundaries */
729e6f8dbb6SToby Isaac   {
730e6f8dbb6SToby Isaac     DMBoundary next = (*dm)->boundary;
731e6f8dbb6SToby Isaac     while (next) {
732e6f8dbb6SToby Isaac       DMBoundary b = next;
733e6f8dbb6SToby Isaac 
734e6f8dbb6SToby Isaac       next = b->next;
7359566063dSJacob Faibussowitsch       PetscCall(PetscFree(b));
736e6f8dbb6SToby Isaac     }
737e6f8dbb6SToby Isaac   }
738b17ce1afSJed Brown 
7399566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&(*dm)->dmksp));
7409566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&(*dm)->dmsnes));
7419566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&(*dm)->dmts));
74252536dc3SBarry Smith 
74348a46eb9SPierre Jolivet   if ((*dm)->ctx && (*dm)->ctxdestroy) PetscCall((*(*dm)->ctxdestroy)(&(*dm)->ctx));
7449566063dSJacob Faibussowitsch   PetscCall(MatFDColoringDestroy(&(*dm)->fd));
7459566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&(*dm)->ltogmap));
7469566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->vectype));
7479566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->mattype));
74888ed4aceSMatthew G Knepley 
7499566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&(*dm)->localSection));
7509566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&(*dm)->globalSection));
751adc21957SMatthew G. Knepley   PetscCall(PetscFree((*dm)->reorderSectionType));
7529566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&(*dm)->map));
7539566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&(*dm)->defaultConstraint.section));
7549566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&(*dm)->defaultConstraint.mat));
7559566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&(*dm)->sf));
7569566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&(*dm)->sectionSF));
75748a46eb9SPierre Jolivet   if ((*dm)->sfNatural) PetscCall(PetscSFDestroy(&(*dm)->sfNatural));
7589566063dSJacob Faibussowitsch   PetscCall(PetscObjectDereference((PetscObject)(*dm)->sfMigration));
759e4d5475eSStefano Zampini   PetscCall(DMClearAuxiliaryVec(*dm));
7609566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxDestroy(&(*dm)->auxData));
76148a46eb9SPierre Jolivet   if ((*dm)->coarseMesh && (*dm)->coarseMesh->fineMesh == *dm) PetscCall(DMSetFineDM((*dm)->coarseMesh, NULL));
7626eb26441SStefano Zampini 
7639566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->coarseMesh));
76448a46eb9SPierre Jolivet   if ((*dm)->fineMesh && (*dm)->fineMesh->coarseMesh == *dm) PetscCall(DMSetCoarseDM((*dm)->fineMesh, NULL));
7659566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->fineMesh));
7664fb89dddSMatthew G. Knepley   PetscCall(PetscFree((*dm)->Lstart));
7679566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->L));
7689566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->maxCell));
7696858538eSMatthew G. Knepley   PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[0]));
7706858538eSMatthew G. Knepley   PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[1]));
7719566063dSJacob Faibussowitsch   if ((*dm)->transformDestroy) PetscCall((*(*dm)->transformDestroy)(*dm, (*dm)->transformCtx));
7729566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->transformDM));
7739566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&(*dm)->transform));
774ddedc8f6SJames Wright   for (PetscInt i = 0; i < (*dm)->periodic.num_affines; i++) {
775ddedc8f6SJames Wright     PetscCall(VecScatterDestroy(&(*dm)->periodic.affine_to_local[i]));
776ddedc8f6SJames Wright     PetscCall(VecDestroy(&(*dm)->periodic.affine[i]));
777ddedc8f6SJames Wright   }
778ddedc8f6SJames Wright   if ((*dm)->periodic.num_affines > 0) PetscCall(PetscFree2((*dm)->periodic.affine_to_local, (*dm)->periodic.affine));
7796636e97aSMatthew G Knepley 
7809566063dSJacob Faibussowitsch   PetscCall(DMClearDS(*dm));
7819566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->dmBC));
782e04113cfSBarry Smith   /* if memory was published with SAWs then destroy it */
7839566063dSJacob Faibussowitsch   PetscCall(PetscObjectSAWsViewOff((PetscObject)*dm));
784732e2eb9SMatthew G Knepley 
785213acdd3SPierre Jolivet   PetscTryTypeMethod(*dm, destroy);
7869566063dSJacob Faibussowitsch   PetscCall(DMMonitorCancel(*dm));
787d2b2dc1eSMatthew G. Knepley   PetscCall(DMCeedDestroy(&(*dm)->dmceed));
788f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED
7899566063dSJacob Faibussowitsch   PetscCallCEED(CeedElemRestrictionDestroy(&(*dm)->ceedERestrict));
7909566063dSJacob Faibussowitsch   PetscCallCEED(CeedDestroy(&(*dm)->ceed));
791f918ec44SMatthew G. Knepley #endif
792435a35e8SMatthew G Knepley   /* We do not destroy (*dm)->data here so that we can reference count backend objects */
7939566063dSJacob Faibussowitsch   PetscCall(PetscHeaderDestroy(dm));
7943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
79547c6ae99SBarry Smith }
79647c6ae99SBarry Smith 
797d7bf68aeSBarry Smith /*@
798bb7acecfSBarry Smith   DMSetUp - sets up the data structures inside a `DM` object
799d7bf68aeSBarry Smith 
80020f4b53cSBarry Smith   Collective
801d7bf68aeSBarry Smith 
802d7bf68aeSBarry Smith   Input Parameter:
803bb7acecfSBarry Smith . dm - the `DM` object to setup
804d7bf68aeSBarry Smith 
805bb7acecfSBarry Smith   Level: intermediate
806d7bf68aeSBarry Smith 
807bb7acecfSBarry Smith   Note:
808bb7acecfSBarry Smith   This is usually called after various parameter setting operations and `DMSetFromOptions()` are called on the `DM`
809bb7acecfSBarry Smith 
8101cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
811d7bf68aeSBarry Smith @*/
812d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUp(DM dm)
813d71ae5a4SJacob Faibussowitsch {
814d7bf68aeSBarry Smith   PetscFunctionBegin;
815171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8163ba16761SJacob Faibussowitsch   if (dm->setupcalled) PetscFunctionReturn(PETSC_SUCCESS);
817dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, setup);
8188387afaaSJed Brown   dm->setupcalled = PETSC_TRUE;
8193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
820d7bf68aeSBarry Smith }
821d7bf68aeSBarry Smith 
822d7bf68aeSBarry Smith /*@
823bb7acecfSBarry Smith   DMSetFromOptions - sets parameters in a `DM` from the options database
824d7bf68aeSBarry Smith 
82520f4b53cSBarry Smith   Collective
826d7bf68aeSBarry Smith 
827d7bf68aeSBarry Smith   Input Parameter:
828bb7acecfSBarry Smith . dm - the `DM` object to set options for
829d7bf68aeSBarry Smith 
83020f4b53cSBarry Smith   Options Database Keys:
831bb7acecfSBarry Smith + -dm_preallocate_only                               - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros
832bb7acecfSBarry Smith . -dm_vec_type <type>                                - type of vector to create inside `DM`
833bb7acecfSBarry Smith . -dm_mat_type <type>                                - type of matrix to create inside `DM`
834a4ea9b21SRichard Tran Mills . -dm_is_coloring_type                               - <global or local>
83520f4b53cSBarry Smith . -dm_bind_below <n>                                 - bind (force execution on CPU) for `Vec` and `Mat` objects with local size (number of vector entries or matrix rows) below n; currently only supported for `DMDA`
83620f4b53cSBarry Smith . -dm_plex_filename <str>                            - File containing a mesh
8379318fe57SMatthew G. Knepley . -dm_plex_boundary_filename <str>                   - File containing a mesh boundary
838cd7e8a5eSksagiyam . -dm_plex_name <str>                                - Name of the mesh in the file
8395dca41c3SJed Brown . -dm_plex_shape <shape>                             - The domain shape, such as `BOX`, `SPHERE`, etc.
8409318fe57SMatthew G. Knepley . -dm_plex_cell <ct>                                 - Cell shape
8419318fe57SMatthew G. Knepley . -dm_plex_reference_cell_domain <bool>              - Use a reference cell domain
8429318fe57SMatthew G. Knepley . -dm_plex_dim <dim>                                 - Set the topological dimension
843bb7acecfSBarry Smith . -dm_plex_simplex <bool>                            - `PETSC_TRUE` for simplex elements, `PETSC_FALSE` for tensor elements
844bb7acecfSBarry Smith . -dm_plex_interpolate <bool>                        - `PETSC_TRUE` turns on topological interpolation (creating edges and faces)
8459318fe57SMatthew G. Knepley . -dm_plex_scale <sc>                                - Scale factor for mesh coordinates
846be664eb1SMatthew G. Knepley . -dm_coord_remap <bool>                             - Map coordinates using a function
847be664eb1SMatthew G. Knepley . -dm_coord_map <mapname>                            - Select a builtin coordinate map
848be664eb1SMatthew G. Knepley . -dm_coord_map_params <p0,p1,p2,...>                - Set coordinate mapping parameters
8499318fe57SMatthew G. Knepley . -dm_plex_box_faces <m,n,p>                         - Number of faces along each dimension
8509318fe57SMatthew G. Knepley . -dm_plex_box_lower <x,y,z>                         - Specify lower-left-bottom coordinates for the box
8519318fe57SMatthew G. Knepley . -dm_plex_box_upper <x,y,z>                         - Specify upper-right-top coordinates for the box
852bb7acecfSBarry Smith . -dm_plex_box_bd <bx,by,bz>                         - Specify the `DMBoundaryType` for each direction
8539318fe57SMatthew G. Knepley . -dm_plex_sphere_radius <r>                         - The sphere radius
8549318fe57SMatthew G. Knepley . -dm_plex_ball_radius <r>                           - Radius of the ball
8559318fe57SMatthew G. Knepley . -dm_plex_cylinder_bd <bz>                          - Boundary type in the z direction
8569318fe57SMatthew G. Knepley . -dm_plex_cylinder_num_wedges <n>                   - Number of wedges around the cylinder
857bdf63967SMatthew G. Knepley . -dm_plex_reorder <order>                           - Reorder the mesh using the specified algorithm
8589318fe57SMatthew G. Knepley . -dm_refine_pre <n>                                 - The number of refinements before distribution
8599318fe57SMatthew G. Knepley . -dm_refine_uniform_pre <bool>                      - Flag for uniform refinement before distribution
8609318fe57SMatthew G. Knepley . -dm_refine_volume_limit_pre <v>                    - The maximum cell volume after refinement before distribution
8619318fe57SMatthew G. Knepley . -dm_refine <n>                                     - The number of refinements after distribution
862bdf63967SMatthew G. Knepley . -dm_extrude <l>                                    - Activate extrusion and specify the number of layers to extrude
863d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thickness <t>           - The total thickness of extruded layers
864d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_use_tensor <bool>       - Use tensor cells when extruding
865d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_symmetric <bool>        - Extrude layers symmetrically about the surface
866d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_normal <n0,...,nd>      - Specify the extrusion direction
867d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thicknesses <t0,...,tl> - Specify thickness of each layer
868909dfd52SMatthew G. Knepley . -dm_plex_create_fv_ghost_cells                     - Flag to create finite volume ghost cells on the boundary
869909dfd52SMatthew G. Knepley . -dm_plex_fv_ghost_cells_label <name>               - Label name for ghost cells boundary
8709318fe57SMatthew G. Knepley . -dm_distribute <bool>                              - Flag to redistribute a mesh among processes
8719318fe57SMatthew G. Knepley . -dm_distribute_overlap <n>                         - The size of the overlap halo
8729318fe57SMatthew G. Knepley . -dm_plex_adj_cone <bool>                           - Set adjacency direction
87320f4b53cSBarry Smith . -dm_plex_adj_closure <bool>                        - Set adjacency size
874d2b2dc1eSMatthew G. Knepley . -dm_plex_use_ceed <bool>                           - Use LibCEED as the FEM backend
87520f4b53cSBarry Smith . -dm_plex_check_symmetry                            - Check that the adjacency information in the mesh is symmetric - `DMPlexCheckSymmetry()`
876bb7acecfSBarry Smith . -dm_plex_check_skeleton                            - Check that each cell has the correct number of vertices (only for homogeneous simplex or tensor meshes) - `DMPlexCheckSkeleton()`
877bb7acecfSBarry Smith . -dm_plex_check_faces                               - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type - `DMPlexCheckFaces()`
878bb7acecfSBarry Smith . -dm_plex_check_geometry                            - Check that cells have positive volume - `DMPlexCheckGeometry()`
879bb7acecfSBarry Smith . -dm_plex_check_pointsf                             - Check some necessary conditions for `PointSF` - `DMPlexCheckPointSF()`
880bb7acecfSBarry Smith . -dm_plex_check_interface_cones                     - Check points on inter-partition interfaces have conforming order of cone points - `DMPlexCheckInterfaceCones()`
881384a6580SVaclav Hapla - -dm_plex_check_all                                 - Perform all the checks above
882d7bf68aeSBarry Smith 
88395eb5ee5SVaclav Hapla   Level: intermediate
88495eb5ee5SVaclav Hapla 
8851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
886bb7acecfSBarry Smith          `DMPlexCheckSymmetry()`, `DMPlexCheckSkeleton()`, `DMPlexCheckFaces()`, `DMPlexCheckGeometry()`, `DMPlexCheckPointSF()`, `DMPlexCheckInterfaceCones()`,
88760225df5SJacob Faibussowitsch          `DMSetOptionsPrefix()`, `DMType`, `DMPLEX`, `DMDA`
888d7bf68aeSBarry Smith @*/
889d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFromOptions(DM dm)
890d71ae5a4SJacob Faibussowitsch {
8917781c08eSBarry Smith   char      typeName[256];
892ca266f36SBarry Smith   PetscBool flg;
893d7bf68aeSBarry Smith 
894d7bf68aeSBarry Smith   PetscFunctionBegin;
895171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
89649be4549SMatthew G. Knepley   dm->setfromoptionscalled = PETSC_TRUE;
8979566063dSJacob Faibussowitsch   if (dm->sf) PetscCall(PetscSFSetFromOptions(dm->sf));
8989566063dSJacob Faibussowitsch   if (dm->sectionSF) PetscCall(PetscSFSetFromOptions(dm->sectionSF));
899dd4c3f67SMatthew G. Knepley   if (dm->coordinates[0].dm) PetscCall(DMSetFromOptions(dm->coordinates[0].dm));
900d0609cedSBarry Smith   PetscObjectOptionsBegin((PetscObject)dm);
9019566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-dm_preallocate_only", "only preallocate matrix, but do not set column indices", "DMSetMatrixPreallocateOnly", dm->prealloc_only, &dm->prealloc_only, NULL));
9029566063dSJacob Faibussowitsch   PetscCall(PetscOptionsFList("-dm_vec_type", "Vector type used for created vectors", "DMSetVecType", VecList, dm->vectype, typeName, 256, &flg));
9031baa6e33SBarry Smith   if (flg) PetscCall(DMSetVecType(dm, typeName));
9049566063dSJacob Faibussowitsch   PetscCall(PetscOptionsFList("-dm_mat_type", "Matrix type used for created matrices", "DMSetMatType", MatList, dm->mattype ? dm->mattype : typeName, typeName, sizeof(typeName), &flg));
9051baa6e33SBarry Smith   if (flg) PetscCall(DMSetMatType(dm, typeName));
906863027abSJed Brown   PetscCall(PetscOptionsEnum("-dm_blocking_type", "Topological point or field node blocking", "DMSetBlockingType", DMBlockingTypes, (PetscEnum)dm->blocking_type, (PetscEnum *)&dm->blocking_type, NULL));
9079566063dSJacob Faibussowitsch   PetscCall(PetscOptionsEnum("-dm_is_coloring_type", "Global or local coloring of Jacobian", "DMSetISColoringType", ISColoringTypes, (PetscEnum)dm->coloringtype, (PetscEnum *)&dm->coloringtype, NULL));
9089566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt("-dm_bind_below", "Set the size threshold (in entries) below which the Vec is bound to the CPU", "VecBindToCPU", dm->bind_below, &dm->bind_below, &flg));
909eb9d3e4dSMatthew G. Knepley   PetscCall(PetscOptionsBool("-dm_ignore_perm_output", "Ignore the local section permutation on output", "DMGetOutputDM", dm->ignorePermOutput, &dm->ignorePermOutput, NULL));
910dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, setfromoptions, PetscOptionsObject);
911f9ba7244SBarry Smith   /* process any options handlers added with PetscObjectAddOptionsHandler() */
912dbbe0bcdSBarry Smith   PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)dm, PetscOptionsObject));
913d0609cedSBarry Smith   PetscOptionsEnd();
9143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
915d7bf68aeSBarry Smith }
916d7bf68aeSBarry Smith 
917fc9bc008SSatish Balay /*@C
918bb7acecfSBarry Smith   DMViewFromOptions - View a `DM` in a particular way based on a request in the options database
919fe2efc57SMark 
92020f4b53cSBarry Smith   Collective
921fe2efc57SMark 
922fe2efc57SMark   Input Parameters:
923bb7acecfSBarry Smith + dm   - the `DM` object
92420f4b53cSBarry Smith . obj  - optional object that provides the prefix for the options database (if `NULL` then the prefix in obj is used)
92560225df5SJacob Faibussowitsch - name - option string that is used to activate viewing
926fe2efc57SMark 
927fe2efc57SMark   Level: intermediate
928bb7acecfSBarry Smith 
929bb7acecfSBarry Smith   Note:
930bb7acecfSBarry Smith   See `PetscObjectViewFromOptions()` for a list of values that can be provided in the options database to determine how the `DM` is viewed
931bb7acecfSBarry Smith 
93260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `PetscObjectViewFromOptions()`, `DMCreate()`
933fe2efc57SMark @*/
934d71ae5a4SJacob Faibussowitsch PetscErrorCode DMViewFromOptions(DM dm, PetscObject obj, const char name[])
935d71ae5a4SJacob Faibussowitsch {
936fe2efc57SMark   PetscFunctionBegin;
937fe2efc57SMark   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9389566063dSJacob Faibussowitsch   PetscCall(PetscObjectViewFromOptions((PetscObject)dm, obj, name));
9393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
940fe2efc57SMark }
941fe2efc57SMark 
942fe2efc57SMark /*@C
943bb7acecfSBarry Smith   DMView - Views a `DM`. Depending on the `PetscViewer` and its `PetscViewerFormat` it may print some ASCII information about the `DM` to the screen or a file or
944bb7acecfSBarry Smith   save the `DM` in a binary file to be loaded later or create a visualization of the `DM`
94547c6ae99SBarry Smith 
94620f4b53cSBarry Smith   Collective
94747c6ae99SBarry Smith 
948d8d19677SJose E. Roman   Input Parameters:
949bb7acecfSBarry Smith + dm - the `DM` object to view
95047c6ae99SBarry Smith - v  - the viewer
95147c6ae99SBarry Smith 
95220f4b53cSBarry Smith   Level: beginner
95320f4b53cSBarry Smith 
95473ff1848SBarry Smith   Note:
955bb7acecfSBarry Smith   Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` as the `PetscViewerFormat` one can save multiple `DMPLEX`
956bb7acecfSBarry Smith   meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()`
957bb7acecfSBarry Smith   before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object.
958cd7e8a5eSksagiyam 
9591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewer`, `PetscViewerFormat`, `PetscViewerSetFormat()`, `DMDestroy()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMLoad()`, `PetscObjectSetName()`
96047c6ae99SBarry Smith @*/
961d71ae5a4SJacob Faibussowitsch PetscErrorCode DMView(DM dm, PetscViewer v)
962d71ae5a4SJacob Faibussowitsch {
96332c0f0efSBarry Smith   PetscBool         isbinary;
96476a8abe0SBarry Smith   PetscMPIInt       size;
96576a8abe0SBarry Smith   PetscViewerFormat format;
96647c6ae99SBarry Smith 
96747c6ae99SBarry Smith   PetscFunctionBegin;
968171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
96948a46eb9SPierre Jolivet   if (!v) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &v));
970b1b135c8SBarry Smith   PetscValidHeaderSpecific(v, PETSC_VIEWER_CLASSID, 2);
97174903a4fSStefano Zampini   /* Ideally, we would like to have this test on.
97274903a4fSStefano Zampini      However, it currently breaks socket viz via GLVis.
97374903a4fSStefano Zampini      During DMView(parallel_mesh,glvis_viewer), each
97474903a4fSStefano Zampini      process opens a sequential ASCII socket to visualize
97574903a4fSStefano Zampini      the local mesh, and PetscObjectView(dm,local_socket)
97674903a4fSStefano Zampini      is internally called inside VecView_GLVis, incurring
97774903a4fSStefano Zampini      in an error here */
97874903a4fSStefano Zampini   /* PetscCheckSameComm(dm,1,v,2); */
9799566063dSJacob Faibussowitsch   PetscCall(PetscViewerCheckWritable(v));
980b1b135c8SBarry Smith 
9819566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(v, &format));
9829566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
9833ba16761SJacob Faibussowitsch   if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(PETSC_SUCCESS);
9849566063dSJacob Faibussowitsch   PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)dm, v));
9859566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)v, PETSCVIEWERBINARY, &isbinary));
98632c0f0efSBarry Smith   if (isbinary) {
98755849f57SBarry Smith     PetscInt classid = DM_FILE_CLASSID;
98832c0f0efSBarry Smith     char     type[256];
98932c0f0efSBarry Smith 
9909566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryWrite(v, &classid, 1, PETSC_INT));
991c6a7a370SJeremy L Thompson     PetscCall(PetscStrncpy(type, ((PetscObject)dm)->type_name, sizeof(type)));
9929566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryWrite(v, type, 256, PETSC_CHAR));
99332c0f0efSBarry Smith   }
994dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, view, v);
9953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
99647c6ae99SBarry Smith }
99747c6ae99SBarry Smith 
99847c6ae99SBarry Smith /*@
999bb7acecfSBarry Smith   DMCreateGlobalVector - Creates a global vector from a `DM` object. A global vector is a parallel vector that has no duplicate values shared between MPI ranks,
1000bb7acecfSBarry Smith   that is it has no ghost locations.
100147c6ae99SBarry Smith 
100220f4b53cSBarry Smith   Collective
100347c6ae99SBarry Smith 
100447c6ae99SBarry Smith   Input Parameter:
1005bb7acecfSBarry Smith . dm - the `DM` object
100647c6ae99SBarry Smith 
100747c6ae99SBarry Smith   Output Parameter:
100847c6ae99SBarry Smith . vec - the global vector
100947c6ae99SBarry Smith 
1010073dac72SJed Brown   Level: beginner
101147c6ae99SBarry Smith 
10121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
1013bb7acecfSBarry Smith          `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()`
101447c6ae99SBarry Smith @*/
1015d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateGlobalVector(DM dm, Vec *vec)
1016d71ae5a4SJacob Faibussowitsch {
101747c6ae99SBarry Smith   PetscFunctionBegin;
1018171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10194f572ea9SToby Isaac   PetscAssertPointer(vec, 2);
1020dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createglobalvector, vec);
102176bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1022c6b011d8SStefano Zampini     DM vdm;
1023c6b011d8SStefano Zampini 
10249566063dSJacob Faibussowitsch     PetscCall(VecGetDM(*vec, &vdm));
10257a8be351SBarry Smith     PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name);
1026c6b011d8SStefano Zampini   }
10273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
102847c6ae99SBarry Smith }
102947c6ae99SBarry Smith 
103047c6ae99SBarry Smith /*@
1031bb7acecfSBarry Smith   DMCreateLocalVector - Creates a local vector from a `DM` object.
103247c6ae99SBarry Smith 
103347c6ae99SBarry Smith   Not Collective
103447c6ae99SBarry Smith 
103547c6ae99SBarry Smith   Input Parameter:
1036bb7acecfSBarry Smith . dm - the `DM` object
103747c6ae99SBarry Smith 
103847c6ae99SBarry Smith   Output Parameter:
103947c6ae99SBarry Smith . vec - the local vector
104047c6ae99SBarry Smith 
1041073dac72SJed Brown   Level: beginner
104247c6ae99SBarry Smith 
104320f4b53cSBarry Smith   Note:
1044bb7acecfSBarry Smith   A local vector usually has ghost locations that contain values that are owned by different MPI ranks. A global vector has no ghost locations.
1045bb7acecfSBarry Smith 
10461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
1047bb7acecfSBarry Smith          `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()`
104847c6ae99SBarry Smith @*/
1049d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLocalVector(DM dm, Vec *vec)
1050d71ae5a4SJacob Faibussowitsch {
105147c6ae99SBarry Smith   PetscFunctionBegin;
1052171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10534f572ea9SToby Isaac   PetscAssertPointer(vec, 2);
1054dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createlocalvector, vec);
105576bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1056c6b011d8SStefano Zampini     DM vdm;
1057c6b011d8SStefano Zampini 
10589566063dSJacob Faibussowitsch     PetscCall(VecGetDM(*vec, &vdm));
10597a8be351SBarry Smith     PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_LIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name);
1060c6b011d8SStefano Zampini   }
10613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
106247c6ae99SBarry Smith }
106347c6ae99SBarry Smith 
10641411c6eeSJed Brown /*@
1065bb7acecfSBarry Smith   DMGetLocalToGlobalMapping - Accesses the local-to-global mapping in a `DM`.
10661411c6eeSJed Brown 
106720f4b53cSBarry Smith   Collective
10681411c6eeSJed Brown 
10691411c6eeSJed Brown   Input Parameter:
1070bb7acecfSBarry Smith . dm - the `DM` that provides the mapping
10711411c6eeSJed Brown 
10721411c6eeSJed Brown   Output Parameter:
10731411c6eeSJed Brown . ltog - the mapping
10741411c6eeSJed Brown 
1075bb7acecfSBarry Smith   Level: advanced
10761411c6eeSJed Brown 
10771411c6eeSJed Brown   Notes:
1078bb7acecfSBarry Smith   The global to local mapping allows one to set values into the global vector or matrix using `VecSetValuesLocal()` and `MatSetValuesLocal()`
10791411c6eeSJed Brown 
1080bb7acecfSBarry Smith   Vectors obtained with  `DMCreateGlobalVector()` and matrices obtained with `DMCreateMatrix()` already contain the global mapping so you do
1081bb7acecfSBarry Smith   need to use this function with those objects.
1082bb7acecfSBarry Smith 
1083bb7acecfSBarry Smith   This mapping can then be used by `VecSetLocalToGlobalMapping()` or `MatSetLocalToGlobalMapping()`.
1084bb7acecfSBarry Smith 
108560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `VecSetLocalToGlobalMapping()`, `MatSetLocalToGlobalMapping()`,
1086bb7acecfSBarry Smith           `DMCreateMatrix()`
10871411c6eeSJed Brown @*/
1088d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalToGlobalMapping(DM dm, ISLocalToGlobalMapping *ltog)
1089d71ae5a4SJacob Faibussowitsch {
10900be3e97aSMatthew G. Knepley   PetscInt bs = -1, bsLocal[2], bsMinMax[2];
10911411c6eeSJed Brown 
10921411c6eeSJed Brown   PetscFunctionBegin;
10931411c6eeSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10944f572ea9SToby Isaac   PetscAssertPointer(ltog, 2);
10951411c6eeSJed Brown   if (!dm->ltogmap) {
109637d0c07bSMatthew G Knepley     PetscSection section, sectionGlobal;
109737d0c07bSMatthew G Knepley 
10989566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
109937d0c07bSMatthew G Knepley     if (section) {
1100a974ec88SMatthew G. Knepley       const PetscInt *cdofs;
110137d0c07bSMatthew G Knepley       PetscInt       *ltog;
1102ccf3bd66SMatthew G. Knepley       PetscInt        pStart, pEnd, n, p, k, l;
110337d0c07bSMatthew G Knepley 
11049566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalSection(dm, &sectionGlobal));
11059566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
11069566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetStorageSize(section, &n));
11079566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &ltog)); /* We want the local+overlap size */
110837d0c07bSMatthew G Knepley       for (p = pStart, l = 0; p < pEnd; ++p) {
1109e6befd46SJed Brown         PetscInt bdof, cdof, dof, off, c, cind;
111037d0c07bSMatthew G Knepley 
111137d0c07bSMatthew G Knepley         /* Should probably use constrained dofs */
11129566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(section, p, &dof));
11139566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintDof(section, p, &cdof));
11149566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintIndices(section, p, &cdofs));
11159566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(sectionGlobal, p, &off));
11161a7dc684SMatthew G. Knepley         /* If you have dofs, and constraints, and they are unequal, we set the blocksize to 1 */
11171a7dc684SMatthew G. Knepley         bdof = cdof && (dof - cdof) ? 1 : dof;
1118ad540459SPierre Jolivet         if (dof) bs = bs < 0 ? bdof : PetscGCD(bs, bdof);
11195227eafbSStefano Zampini 
1120e6befd46SJed Brown         for (c = 0, cind = 0; c < dof; ++c, ++l) {
11215227eafbSStefano Zampini           if (cind < cdof && c == cdofs[cind]) {
1122e6befd46SJed Brown             ltog[l] = off < 0 ? off - c : -(off + c + 1);
1123e6befd46SJed Brown             cind++;
1124e6befd46SJed Brown           } else {
11255227eafbSStefano Zampini             ltog[l] = (off < 0 ? -(off + 1) : off) + c - cind;
1126e6befd46SJed Brown           }
112737d0c07bSMatthew G Knepley         }
112837d0c07bSMatthew G Knepley       }
1129bff27382SMatthew G. Knepley       /* Must have same blocksize on all procs (some might have no points) */
11309371c9d4SSatish Balay       bsLocal[0] = bs < 0 ? PETSC_MAX_INT : bs;
11319371c9d4SSatish Balay       bsLocal[1] = bs;
11329566063dSJacob Faibussowitsch       PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)dm), bsLocal, bsMinMax));
11339371c9d4SSatish Balay       if (bsMinMax[0] != bsMinMax[1]) {
11349371c9d4SSatish Balay         bs = 1;
11359371c9d4SSatish Balay       } else {
11369371c9d4SSatish Balay         bs = bsMinMax[0];
11379371c9d4SSatish Balay       }
11387591dbb2SMatthew G. Knepley       bs = bs < 0 ? 1 : bs;
11397591dbb2SMatthew G. Knepley       /* Must reduce indices by blocksize */
1140ccf3bd66SMatthew G. Knepley       if (bs > 1) {
1141ca469d19SJed Brown         for (l = 0, k = 0; l < n; l += bs, ++k) {
1142ca469d19SJed Brown           // Integer division of negative values truncates toward zero(!), not toward negative infinity
1143ca469d19SJed Brown           ltog[k] = ltog[l] >= 0 ? ltog[l] / bs : -(-(ltog[l] + 1) / bs + 1);
1144ca469d19SJed Brown         }
1145ccf3bd66SMatthew G. Knepley         n /= bs;
1146ccf3bd66SMatthew G. Knepley       }
11479566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm), bs, n, ltog, PETSC_OWN_POINTER, &dm->ltogmap));
1148dbbe0bcdSBarry Smith     } else PetscUseTypeMethod(dm, getlocaltoglobalmapping);
114937d0c07bSMatthew G Knepley   }
11501411c6eeSJed Brown   *ltog = dm->ltogmap;
11513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11521411c6eeSJed Brown }
11531411c6eeSJed Brown 
11541411c6eeSJed Brown /*@
1155bb7acecfSBarry Smith   DMGetBlockSize - Gets the inherent block size associated with a `DM`
11561411c6eeSJed Brown 
11571411c6eeSJed Brown   Not Collective
11581411c6eeSJed Brown 
11591411c6eeSJed Brown   Input Parameter:
1160bb7acecfSBarry Smith . dm - the `DM` with block structure
11611411c6eeSJed Brown 
11621411c6eeSJed Brown   Output Parameter:
11631411c6eeSJed Brown . bs - the block size, 1 implies no exploitable block structure
11641411c6eeSJed Brown 
11651411c6eeSJed Brown   Level: intermediate
11661411c6eeSJed Brown 
116773ff1848SBarry Smith   Notes:
1168bb7acecfSBarry Smith   This might be the number of degrees of freedom at each grid point for a structured grid.
1169bb7acecfSBarry Smith 
1170bb7acecfSBarry Smith   Complex `DM` that represent multiphysics or staggered grids or mixed-methods do not generally have a single inherent block size, but
1171bb7acecfSBarry Smith   rather different locations in the vectors may have a different block size.
1172bb7acecfSBarry Smith 
11731cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISCreateBlock()`, `VecSetBlockSize()`, `MatSetBlockSize()`, `DMGetLocalToGlobalMapping()`
11741411c6eeSJed Brown @*/
1175d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBlockSize(DM dm, PetscInt *bs)
1176d71ae5a4SJacob Faibussowitsch {
11771411c6eeSJed Brown   PetscFunctionBegin;
11781411c6eeSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11794f572ea9SToby Isaac   PetscAssertPointer(bs, 2);
11807a8be351SBarry Smith   PetscCheck(dm->bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM does not have enough information to provide a block size yet");
11811411c6eeSJed Brown   *bs = dm->bs;
11823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11831411c6eeSJed Brown }
11841411c6eeSJed Brown 
118548eeb7c8SBarry Smith /*@C
1186bb7acecfSBarry Smith   DMCreateInterpolation - Gets the interpolation matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by
1187bb7acecfSBarry Smith   `DMCreateGlobalVector()` on the coarse `DM` to similar vectors on the fine grid `DM`.
118847c6ae99SBarry Smith 
118920f4b53cSBarry Smith   Collective
119047c6ae99SBarry Smith 
1191d8d19677SJose E. Roman   Input Parameters:
1192bb7acecfSBarry Smith + dmc - the `DM` object
1193bb7acecfSBarry Smith - dmf - the second, finer `DM` object
119447c6ae99SBarry Smith 
1195d8d19677SJose E. Roman   Output Parameters:
119647c6ae99SBarry Smith + mat - the interpolation
1197bb7acecfSBarry Smith - vec - the scaling (optional), see `DMCreateInterpolationScale()`
119847c6ae99SBarry Smith 
119947c6ae99SBarry Smith   Level: developer
120047c6ae99SBarry Smith 
120195452b02SPatrick Sanan   Notes:
1202bb7acecfSBarry Smith   For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by
1203bb7acecfSBarry Smith   DMCoarsen(). The coordinates set into the `DMDA` are completely ignored in computing the interpolation.
1204d52bd9f3SBarry Smith 
1205bb7acecfSBarry Smith   For `DMDA` objects you can use this interpolation (more precisely the interpolation from the `DMGetCoordinateDM()`) to interpolate the mesh coordinate
1206bb7acecfSBarry Smith   vectors EXCEPT in the periodic case where it does not make sense since the coordinate vectors are not periodic.
120785afcc9aSBarry Smith 
12081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolationScale()`
120947c6ae99SBarry Smith @*/
1210d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolation(DM dmc, DM dmf, Mat *mat, Vec *vec)
1211d71ae5a4SJacob Faibussowitsch {
121247c6ae99SBarry Smith   PetscFunctionBegin;
1213a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
1214a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
12154f572ea9SToby Isaac   PetscAssertPointer(mat, 3);
12169566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateInterpolation, dmc, dmf, 0, 0));
1217dbbe0bcdSBarry Smith   PetscUseTypeMethod(dmc, createinterpolation, dmf, mat, vec);
12189566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateInterpolation, dmc, dmf, 0, 0));
12193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
122047c6ae99SBarry Smith }
122147c6ae99SBarry Smith 
12223ad4599aSBarry Smith /*@
1223a4e35b19SJacob Faibussowitsch   DMCreateInterpolationScale - Forms L = 1/(R*1) where 1 is the vector of all ones, and R is
1224a4e35b19SJacob Faibussowitsch   the transpose of the interpolation between the `DM`.
12252ed6491fSPatrick Sanan 
12262ed6491fSPatrick Sanan   Input Parameters:
1227bb7acecfSBarry Smith + dac - `DM` that defines a coarse mesh
1228bb7acecfSBarry Smith . daf - `DM` that defines a fine mesh
12292ed6491fSPatrick Sanan - mat - the restriction (or interpolation operator) from fine to coarse
12302ed6491fSPatrick Sanan 
12312ed6491fSPatrick Sanan   Output Parameter:
12322ed6491fSPatrick Sanan . scale - the scaled vector
12332ed6491fSPatrick Sanan 
1234bb7acecfSBarry Smith   Level: advanced
12352ed6491fSPatrick Sanan 
123673ff1848SBarry Smith   Note:
1237a4e35b19SJacob Faibussowitsch   xcoarse = diag(L)*R*xfine preserves scale and is thus suitable for state (versus residual)
1238a4e35b19SJacob Faibussowitsch   restriction. In other words xcoarse is the coarse representation of xfine.
1239a4e35b19SJacob Faibussowitsch 
124073ff1848SBarry Smith   Developer Note:
1241bb7acecfSBarry Smith   If the fine-scale `DMDA` has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()`
1242e9c74fd6SRichard Tran Mills   on the restriction/interpolation operator to set the bindingpropagates flag to true.
1243e9c74fd6SRichard Tran Mills 
124460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatRestrict()`, `MatInterpolate()`, `DMCreateInterpolation()`, `DMCreateRestriction()`, `DMCreateGlobalVector()`
12452ed6491fSPatrick Sanan @*/
1246d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolationScale(DM dac, DM daf, Mat mat, Vec *scale)
1247d71ae5a4SJacob Faibussowitsch {
12482ed6491fSPatrick Sanan   Vec         fine;
12492ed6491fSPatrick Sanan   PetscScalar one = 1.0;
12509704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA)
1251e9c74fd6SRichard Tran Mills   PetscBool bindingpropagates, isbound;
12529704db99SRichard Tran Mills #endif
12532ed6491fSPatrick Sanan 
12542ed6491fSPatrick Sanan   PetscFunctionBegin;
12559566063dSJacob Faibussowitsch   PetscCall(DMCreateGlobalVector(daf, &fine));
12569566063dSJacob Faibussowitsch   PetscCall(DMCreateGlobalVector(dac, scale));
12579566063dSJacob Faibussowitsch   PetscCall(VecSet(fine, one));
12589704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA)
12599704db99SRichard Tran Mills   /* If the 'fine' Vec is bound to the CPU, it makes sense to bind 'mat' as well.
12609704db99SRichard Tran Mills    * Note that we only do this for the CUDA case, right now, but if we add support for MatMultTranspose() via ViennaCL,
12619704db99SRichard Tran Mills    * we'll need to do it for that case, too.*/
12629566063dSJacob Faibussowitsch   PetscCall(VecGetBindingPropagates(fine, &bindingpropagates));
1263e9c74fd6SRichard Tran Mills   if (bindingpropagates) {
12649566063dSJacob Faibussowitsch     PetscCall(MatSetBindingPropagates(mat, PETSC_TRUE));
12659566063dSJacob Faibussowitsch     PetscCall(VecBoundToCPU(fine, &isbound));
12669566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(mat, isbound));
126783aa49f4SRichard Tran Mills   }
12689704db99SRichard Tran Mills #endif
12699566063dSJacob Faibussowitsch   PetscCall(MatRestrict(mat, fine, *scale));
12709566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&fine));
12719566063dSJacob Faibussowitsch   PetscCall(VecReciprocal(*scale));
12723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12732ed6491fSPatrick Sanan }
12742ed6491fSPatrick Sanan 
12752ed6491fSPatrick Sanan /*@
1276bb7acecfSBarry Smith   DMCreateRestriction - Gets restriction matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by
1277bb7acecfSBarry Smith   `DMCreateGlobalVector()` on the fine `DM` to similar vectors on the coarse grid `DM`.
12783ad4599aSBarry Smith 
127920f4b53cSBarry Smith   Collective
12803ad4599aSBarry Smith 
1281d8d19677SJose E. Roman   Input Parameters:
1282bb7acecfSBarry Smith + dmc - the `DM` object
1283bb7acecfSBarry Smith - dmf - the second, finer `DM` object
12843ad4599aSBarry Smith 
12853ad4599aSBarry Smith   Output Parameter:
12863ad4599aSBarry Smith . mat - the restriction
12873ad4599aSBarry Smith 
12883ad4599aSBarry Smith   Level: developer
12893ad4599aSBarry Smith 
1290bb7acecfSBarry Smith   Note:
1291bb7acecfSBarry Smith   This only works for `DMSTAG`. For many situations either the transpose of the operator obtained with `DMCreateInterpolation()` or that
1292bb7acecfSBarry Smith   matrix multiplied by the vector obtained with `DMCreateInterpolationScale()` provides the desired object.
12933ad4599aSBarry Smith 
12941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRestrict()`, `DMInterpolate()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateInterpolation()`
12953ad4599aSBarry Smith @*/
1296d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateRestriction(DM dmc, DM dmf, Mat *mat)
1297d71ae5a4SJacob Faibussowitsch {
12983ad4599aSBarry Smith   PetscFunctionBegin;
1299a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
1300a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
13014f572ea9SToby Isaac   PetscAssertPointer(mat, 3);
13029566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateRestriction, dmc, dmf, 0, 0));
1303dbbe0bcdSBarry Smith   PetscUseTypeMethod(dmc, createrestriction, dmf, mat);
13049566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateRestriction, dmc, dmf, 0, 0));
13053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13063ad4599aSBarry Smith }
13073ad4599aSBarry Smith 
130847c6ae99SBarry Smith /*@
1309a4e35b19SJacob Faibussowitsch   DMCreateInjection - Gets injection matrix between two `DM` objects.
131047c6ae99SBarry Smith 
131120f4b53cSBarry Smith   Collective
131247c6ae99SBarry Smith 
1313d8d19677SJose E. Roman   Input Parameters:
1314bb7acecfSBarry Smith + dac - the `DM` object
1315bb7acecfSBarry Smith - daf - the second, finer `DM` object
131647c6ae99SBarry Smith 
131747c6ae99SBarry Smith   Output Parameter:
13186dbf9973SLawrence Mitchell . mat - the injection
131947c6ae99SBarry Smith 
132047c6ae99SBarry Smith   Level: developer
132147c6ae99SBarry Smith 
1322a4e35b19SJacob Faibussowitsch   Notes:
1323a4e35b19SJacob Faibussowitsch   This is an operator that applied to a vector obtained with `DMCreateGlobalVector()` on the
1324a4e35b19SJacob Faibussowitsch   fine grid maps the values to a vector on the vector on the coarse `DM` by simply selecting
1325a4e35b19SJacob Faibussowitsch   the values on the coarse grid points. This compares to the operator obtained by
1326a4e35b19SJacob Faibussowitsch   `DMCreateRestriction()` or the transpose of the operator obtained by
1327a4e35b19SJacob Faibussowitsch   `DMCreateInterpolation()` that uses a "local weighted average" of the values around the
1328a4e35b19SJacob Faibussowitsch   coarse grid point as the coarse grid value.
1329a4e35b19SJacob Faibussowitsch 
1330bb7acecfSBarry Smith   For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by
1331bb7acecfSBarry Smith   `DMCoarsen()`. The coordinates set into the `DMDA` are completely ignored in computing the injection.
133285afcc9aSBarry Smith 
13331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateInterpolation()`,
1334bb7acecfSBarry Smith           `DMCreateRestriction()`, `MatRestrict()`, `MatInterpolate()`
133547c6ae99SBarry Smith @*/
1336d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInjection(DM dac, DM daf, Mat *mat)
1337d71ae5a4SJacob Faibussowitsch {
133847c6ae99SBarry Smith   PetscFunctionBegin;
1339a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dac, DM_CLASSID, 1);
1340a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(daf, DM_CLASSID, 2);
13414f572ea9SToby Isaac   PetscAssertPointer(mat, 3);
13429566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateInjection, dac, daf, 0, 0));
1343dbbe0bcdSBarry Smith   PetscUseTypeMethod(dac, createinjection, daf, mat);
13449566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateInjection, dac, daf, 0, 0));
13453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
134647c6ae99SBarry Smith }
134747c6ae99SBarry Smith 
1348b412c318SBarry Smith /*@
1349bb7acecfSBarry Smith   DMCreateMassMatrix - Gets the mass matrix between two `DM` objects, M_ij = \int \phi_i \psi_j where the \phi are Galerkin basis functions for a
1350bb7acecfSBarry Smith   a Galerkin finite element model on the `DM`
1351bd041c0cSMatthew G. Knepley 
135220f4b53cSBarry Smith   Collective
1353bd041c0cSMatthew G. Knepley 
1354d8d19677SJose E. Roman   Input Parameters:
1355bb7acecfSBarry Smith + dmc - the target `DM` object
1356bb7acecfSBarry Smith - dmf - the source `DM` object
1357bd041c0cSMatthew G. Knepley 
1358bd041c0cSMatthew G. Knepley   Output Parameter:
1359b4937a87SMatthew G. Knepley . mat - the mass matrix
1360bd041c0cSMatthew G. Knepley 
1361bd041c0cSMatthew G. Knepley   Level: developer
1362bd041c0cSMatthew G. Knepley 
1363bb7acecfSBarry Smith   Notes:
1364bb7acecfSBarry Smith   For `DMPLEX` the finite element model for the `DM` must have been already provided.
1365bb7acecfSBarry Smith 
136620f4b53cSBarry Smith   if `dmc` is `dmf` then x^t M x is an approximation to the L2 norm of the vector x which is obtained by `DMCreateGlobalVector()`
1367bb7acecfSBarry Smith 
136842747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrixLumped()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()`
1369bd041c0cSMatthew G. Knepley @*/
1370d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrix(DM dmc, DM dmf, Mat *mat)
1371d71ae5a4SJacob Faibussowitsch {
1372bd041c0cSMatthew G. Knepley   PetscFunctionBegin;
1373b4937a87SMatthew G. Knepley   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
1374b4937a87SMatthew G. Knepley   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
13754f572ea9SToby Isaac   PetscAssertPointer(mat, 3);
13765b8ffe73SMark Adams   PetscCall(PetscLogEventBegin(DM_CreateMassMatrix, 0, 0, 0, 0));
1377dbbe0bcdSBarry Smith   PetscUseTypeMethod(dmc, createmassmatrix, dmf, mat);
13785b8ffe73SMark Adams   PetscCall(PetscLogEventEnd(DM_CreateMassMatrix, 0, 0, 0, 0));
13793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1380b4937a87SMatthew G. Knepley }
1381b4937a87SMatthew G. Knepley 
1382b4937a87SMatthew G. Knepley /*@
1383bb7acecfSBarry Smith   DMCreateMassMatrixLumped - Gets the lumped mass matrix for a given `DM`
1384b4937a87SMatthew G. Knepley 
138520f4b53cSBarry Smith   Collective
1386b4937a87SMatthew G. Knepley 
1387b4937a87SMatthew G. Knepley   Input Parameter:
1388bb7acecfSBarry Smith . dm - the `DM` object
1389b4937a87SMatthew G. Knepley 
1390b4937a87SMatthew G. Knepley   Output Parameter:
1391bb7acecfSBarry Smith . lm - the lumped mass matrix, which is a diagonal matrix, represented as a vector
1392b4937a87SMatthew G. Knepley 
1393b4937a87SMatthew G. Knepley   Level: developer
1394b4937a87SMatthew G. Knepley 
1395bb7acecfSBarry Smith   Note:
1396bb7acecfSBarry Smith   See `DMCreateMassMatrix()` for how to create the non-lumped version of the mass matrix.
1397bb7acecfSBarry Smith 
139860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrix()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()`
1399b4937a87SMatthew G. Knepley @*/
1400d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrixLumped(DM dm, Vec *lm)
1401d71ae5a4SJacob Faibussowitsch {
1402b4937a87SMatthew G. Knepley   PetscFunctionBegin;
1403b4937a87SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14044f572ea9SToby Isaac   PetscAssertPointer(lm, 2);
1405dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createmassmatrixlumped, lm);
14063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1407bd041c0cSMatthew G. Knepley }
1408bd041c0cSMatthew G. Knepley 
1409bd041c0cSMatthew G. Knepley /*@
1410bb7acecfSBarry Smith   DMCreateColoring - Gets coloring of a graph associated with the `DM`. Often the graph represents the operator matrix associated with the discretization
1411bb7acecfSBarry Smith   of a PDE on the `DM`.
141247c6ae99SBarry Smith 
141320f4b53cSBarry Smith   Collective
141447c6ae99SBarry Smith 
1415d8d19677SJose E. Roman   Input Parameters:
1416bb7acecfSBarry Smith + dm    - the `DM` object
1417bb7acecfSBarry Smith - ctype - `IS_COLORING_LOCAL` or `IS_COLORING_GLOBAL`
141847c6ae99SBarry Smith 
141947c6ae99SBarry Smith   Output Parameter:
142047c6ae99SBarry Smith . coloring - the coloring
142147c6ae99SBarry Smith 
14221bf8429eSBarry Smith   Level: developer
14231bf8429eSBarry Smith 
1424ec5066bdSBarry Smith   Notes:
1425bb7acecfSBarry Smith   Coloring of matrices can also be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
1426bb7acecfSBarry Smith   matrix comes from (what this function provides). In general using the mesh produces a more optimal coloring (fewer colors).
1427ec5066bdSBarry Smith 
1428bb7acecfSBarry Smith   This produces a coloring with the distance of 2, see `MatSetColoringDistance()` which can be used for efficiently computing Jacobians with `MatFDColoringCreate()`
14291bf8429eSBarry Smith   For `DMDA` in three dimensions with periodic boundary conditions the number of grid points in each dimension must be divisible by 2*stencil_width + 1,
14301bf8429eSBarry Smith   otherwise an error will be generated.
1431ec5066bdSBarry Smith 
14321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISColoring`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatType()`, `MatColoring`, `MatFDColoringCreate()`
1433aab9d709SJed Brown @*/
1434d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateColoring(DM dm, ISColoringType ctype, ISColoring *coloring)
1435d71ae5a4SJacob Faibussowitsch {
143647c6ae99SBarry Smith   PetscFunctionBegin;
1437171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14384f572ea9SToby Isaac   PetscAssertPointer(coloring, 3);
1439dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, getcoloring, ctype, coloring);
14403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
144147c6ae99SBarry Smith }
144247c6ae99SBarry Smith 
1443b412c318SBarry Smith /*@
1444bb7acecfSBarry Smith   DMCreateMatrix - Gets an empty matrix for a `DM` that is most commonly used to store the Jacobian of a discrete PDE operator.
144547c6ae99SBarry Smith 
144620f4b53cSBarry Smith   Collective
144747c6ae99SBarry Smith 
144847c6ae99SBarry Smith   Input Parameter:
1449bb7acecfSBarry Smith . dm - the `DM` object
145047c6ae99SBarry Smith 
145147c6ae99SBarry Smith   Output Parameter:
145247c6ae99SBarry Smith . mat - the empty Jacobian
145347c6ae99SBarry Smith 
145420f4b53cSBarry Smith   Options Database Key:
1455bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros
1456f27dd7c6SMatthew G. Knepley 
145720f4b53cSBarry Smith   Level: beginner
145820f4b53cSBarry Smith 
145995452b02SPatrick Sanan   Notes:
146095452b02SPatrick Sanan   This properly preallocates the number of nonzeros in the sparse matrix so you
146194013140SBarry Smith   do not need to do it yourself.
146294013140SBarry Smith 
146394013140SBarry Smith   By default it also sets the nonzero structure and puts in the zero entries. To prevent setting
1464bb7acecfSBarry Smith   the nonzero pattern call `DMSetMatrixPreallocateOnly()`
146594013140SBarry Smith 
1466bb7acecfSBarry Smith   For `DMDA`, when you call `MatView()` on this matrix it is displayed using the global natural ordering, NOT in the ordering used
146794013140SBarry Smith   internally by PETSc.
146894013140SBarry Smith 
1469bb7acecfSBarry Smith   For `DMDA`, in general it is easiest to use `MatSetValuesStencil()` or `MatSetValuesLocal()` to put values into the matrix because
1470bb7acecfSBarry Smith   `MatSetValues()` requires the indices for the global numbering for the `DMDA` which is complic`ated to compute
147194013140SBarry Smith 
14721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMSetMatType()`, `DMCreateMassMatrix()`
1473aab9d709SJed Brown @*/
1474d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMatrix(DM dm, Mat *mat)
1475d71ae5a4SJacob Faibussowitsch {
147647c6ae99SBarry Smith   PetscFunctionBegin;
1477171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14784f572ea9SToby Isaac   PetscAssertPointer(mat, 2);
14799566063dSJacob Faibussowitsch   PetscCall(MatInitializePackage());
14809566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateMatrix, 0, 0, 0, 0));
1481dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, creatematrix, mat);
148276bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1483c6b011d8SStefano Zampini     DM mdm;
1484c6b011d8SStefano Zampini 
14859566063dSJacob Faibussowitsch     PetscCall(MatGetDM(*mat, &mdm));
14867a8be351SBarry Smith     PetscCheck(mdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the matrix", ((PetscObject)dm)->type_name);
1487c6b011d8SStefano Zampini   }
1488e571a35bSMatthew G. Knepley   /* Handle nullspace and near nullspace */
1489e5e52638SMatthew G. Knepley   if (dm->Nf) {
1490e571a35bSMatthew G. Knepley     MatNullSpace nullSpace;
1491649ef022SMatthew Knepley     PetscInt     Nf, f;
1492e571a35bSMatthew G. Knepley 
14939566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
1494649ef022SMatthew Knepley     for (f = 0; f < Nf; ++f) {
1495649ef022SMatthew Knepley       if (dm->nullspaceConstructors[f]) {
14969566063dSJacob Faibussowitsch         PetscCall((*dm->nullspaceConstructors[f])(dm, f, f, &nullSpace));
14979566063dSJacob Faibussowitsch         PetscCall(MatSetNullSpace(*mat, nullSpace));
14989566063dSJacob Faibussowitsch         PetscCall(MatNullSpaceDestroy(&nullSpace));
1499649ef022SMatthew Knepley         break;
1500e571a35bSMatthew G. Knepley       }
1501649ef022SMatthew Knepley     }
1502649ef022SMatthew Knepley     for (f = 0; f < Nf; ++f) {
1503649ef022SMatthew Knepley       if (dm->nearnullspaceConstructors[f]) {
15049566063dSJacob Faibussowitsch         PetscCall((*dm->nearnullspaceConstructors[f])(dm, f, f, &nullSpace));
15059566063dSJacob Faibussowitsch         PetscCall(MatSetNearNullSpace(*mat, nullSpace));
15069566063dSJacob Faibussowitsch         PetscCall(MatNullSpaceDestroy(&nullSpace));
1507e571a35bSMatthew G. Knepley       }
1508e571a35bSMatthew G. Knepley     }
1509e571a35bSMatthew G. Knepley   }
15109566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateMatrix, 0, 0, 0, 0));
15113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
151247c6ae99SBarry Smith }
151347c6ae99SBarry Smith 
1514732e2eb9SMatthew G Knepley /*@
1515a4e35b19SJacob Faibussowitsch   DMSetMatrixPreallocateSkip - When `DMCreateMatrix()` is called the matrix sizes and
1516a4e35b19SJacob Faibussowitsch   `ISLocalToGlobalMapping` will be properly set, but the data structures to store values in the
1517a4e35b19SJacob Faibussowitsch   matrices will not be preallocated.
1518aa0f6e3cSJed Brown 
151920f4b53cSBarry Smith   Logically Collective
1520aa0f6e3cSJed Brown 
1521aa0f6e3cSJed Brown   Input Parameters:
1522bb7acecfSBarry Smith + dm   - the `DM`
1523bb7acecfSBarry Smith - skip - `PETSC_TRUE` to skip preallocation
1524aa0f6e3cSJed Brown 
1525aa0f6e3cSJed Brown   Level: developer
1526aa0f6e3cSJed Brown 
152773ff1848SBarry Smith   Note:
1528a4e35b19SJacob Faibussowitsch   This is most useful to reduce initialization costs when `MatSetPreallocationCOO()` and
1529a4e35b19SJacob Faibussowitsch   `MatSetValuesCOO()` will be used.
1530a4e35b19SJacob Faibussowitsch 
15311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateOnly()`
1532aa0f6e3cSJed Brown @*/
1533d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateSkip(DM dm, PetscBool skip)
1534d71ae5a4SJacob Faibussowitsch {
1535aa0f6e3cSJed Brown   PetscFunctionBegin;
1536aa0f6e3cSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1537aa0f6e3cSJed Brown   dm->prealloc_skip = skip;
15383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1539aa0f6e3cSJed Brown }
1540aa0f6e3cSJed Brown 
1541aa0f6e3cSJed Brown /*@
1542bb7acecfSBarry Smith   DMSetMatrixPreallocateOnly - When `DMCreateMatrix()` is called the matrix will be properly
1543732e2eb9SMatthew G Knepley   preallocated but the nonzero structure and zero values will not be set.
1544732e2eb9SMatthew G Knepley 
154520f4b53cSBarry Smith   Logically Collective
1546732e2eb9SMatthew G Knepley 
1547d8d19677SJose E. Roman   Input Parameters:
1548bb7acecfSBarry Smith + dm   - the `DM`
1549bb7acecfSBarry Smith - only - `PETSC_TRUE` if only want preallocation
1550732e2eb9SMatthew G Knepley 
155120f4b53cSBarry Smith   Options Database Key:
1552bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()`, `DMCreateMassMatrix()`, but do not fill it with zeros
1553f27dd7c6SMatthew G. Knepley 
155420f4b53cSBarry Smith   Level: developer
155520f4b53cSBarry Smith 
15561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateSkip()`
1557732e2eb9SMatthew G Knepley @*/
1558d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateOnly(DM dm, PetscBool only)
1559d71ae5a4SJacob Faibussowitsch {
1560732e2eb9SMatthew G Knepley   PetscFunctionBegin;
1561732e2eb9SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1562732e2eb9SMatthew G Knepley   dm->prealloc_only = only;
15633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1564732e2eb9SMatthew G Knepley }
1565732e2eb9SMatthew G Knepley 
1566b06ff27eSHong Zhang /*@
1567bb7acecfSBarry Smith   DMSetMatrixStructureOnly - When `DMCreateMatrix()` is called, the matrix structure will be created
1568bb7acecfSBarry Smith   but the array for numerical values will not be allocated.
1569b06ff27eSHong Zhang 
157020f4b53cSBarry Smith   Logically Collective
1571b06ff27eSHong Zhang 
1572d8d19677SJose E. Roman   Input Parameters:
1573bb7acecfSBarry Smith + dm   - the `DM`
1574da81f932SPierre Jolivet - only - `PETSC_TRUE` if you only want matrix structure
1575b06ff27eSHong Zhang 
1576b06ff27eSHong Zhang   Level: developer
1577bb7acecfSBarry Smith 
15781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMSetMatrixPreallocateSkip()`
1579b06ff27eSHong Zhang @*/
1580d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixStructureOnly(DM dm, PetscBool only)
1581d71ae5a4SJacob Faibussowitsch {
1582b06ff27eSHong Zhang   PetscFunctionBegin;
1583b06ff27eSHong Zhang   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1584b06ff27eSHong Zhang   dm->structure_only = only;
15853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1586b06ff27eSHong Zhang }
1587b06ff27eSHong Zhang 
1588863027abSJed Brown /*@
1589863027abSJed Brown   DMSetBlockingType - set the blocking granularity to be used for variable block size `DMCreateMatrix()` is called
1590863027abSJed Brown 
159120f4b53cSBarry Smith   Logically Collective
1592863027abSJed Brown 
1593863027abSJed Brown   Input Parameters:
1594863027abSJed Brown + dm    - the `DM`
1595863027abSJed Brown - btype - block by topological point or field node
1596863027abSJed Brown 
159720f4b53cSBarry Smith   Options Database Key:
15980e762ea3SJed Brown . -dm_blocking_type [topological_point, field_node] - use topological point blocking or field node blocking
1599863027abSJed Brown 
160020f4b53cSBarry Smith   Level: advanced
160120f4b53cSBarry Smith 
16021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()`
1603863027abSJed Brown @*/
1604863027abSJed Brown PetscErrorCode DMSetBlockingType(DM dm, DMBlockingType btype)
1605863027abSJed Brown {
1606863027abSJed Brown   PetscFunctionBegin;
1607863027abSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1608863027abSJed Brown   dm->blocking_type = btype;
16093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1610863027abSJed Brown }
1611863027abSJed Brown 
1612863027abSJed Brown /*@
1613863027abSJed Brown   DMGetBlockingType - get the blocking granularity to be used for variable block size `DMCreateMatrix()` is called
1614863027abSJed Brown 
1615863027abSJed Brown   Not Collective
1616863027abSJed Brown 
16172fe279fdSBarry Smith   Input Parameter:
1618863027abSJed Brown . dm - the `DM`
1619863027abSJed Brown 
16202fe279fdSBarry Smith   Output Parameter:
1621863027abSJed Brown . btype - block by topological point or field node
1622863027abSJed Brown 
1623863027abSJed Brown   Level: advanced
1624863027abSJed Brown 
16251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()`
1626863027abSJed Brown @*/
1627863027abSJed Brown PetscErrorCode DMGetBlockingType(DM dm, DMBlockingType *btype)
1628863027abSJed Brown {
1629863027abSJed Brown   PetscFunctionBegin;
1630863027abSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
16314f572ea9SToby Isaac   PetscAssertPointer(btype, 2);
1632863027abSJed Brown   *btype = dm->blocking_type;
16333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1634863027abSJed Brown }
1635863027abSJed Brown 
1636a89ea682SMatthew G Knepley /*@C
1637bb7acecfSBarry Smith   DMGetWorkArray - Gets a work array guaranteed to be at least the input size, restore with `DMRestoreWorkArray()`
1638a89ea682SMatthew G Knepley 
1639a89ea682SMatthew G Knepley   Not Collective
1640a89ea682SMatthew G Knepley 
1641a89ea682SMatthew G Knepley   Input Parameters:
1642bb7acecfSBarry Smith + dm    - the `DM` object
1643a5b23f4aSJose E. Roman . count - The minimum size
164420f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, or `MPIU_INT`)
1645a89ea682SMatthew G Knepley 
1646a89ea682SMatthew G Knepley   Output Parameter:
164760225df5SJacob Faibussowitsch . mem - the work array
1648a89ea682SMatthew G Knepley 
1649a89ea682SMatthew G Knepley   Level: developer
1650a89ea682SMatthew G Knepley 
165173ff1848SBarry Smith   Notes:
1652da81f932SPierre Jolivet   A `DM` may stash the array between instantiations so using this routine may be more efficient than calling `PetscMalloc()`
1653bb7acecfSBarry Smith 
1654bb7acecfSBarry Smith   The array may contain nonzero values
1655bb7acecfSBarry Smith 
16561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMRestoreWorkArray()`, `PetscMalloc()`
1657a89ea682SMatthew G Knepley @*/
1658d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem)
1659d71ae5a4SJacob Faibussowitsch {
1660aa1993deSMatthew G Knepley   DMWorkLink  link;
166169291d52SBarry Smith   PetscMPIInt dsize;
1662a89ea682SMatthew G Knepley 
1663a89ea682SMatthew G Knepley   PetscFunctionBegin;
1664a89ea682SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
16654f572ea9SToby Isaac   PetscAssertPointer(mem, 4);
1666442f3b32SStefano Zampini   if (!count) {
1667442f3b32SStefano Zampini     *(void **)mem = NULL;
1668442f3b32SStefano Zampini     PetscFunctionReturn(PETSC_SUCCESS);
1669442f3b32SStefano Zampini   }
1670aa1993deSMatthew G Knepley   if (dm->workin) {
1671aa1993deSMatthew G Knepley     link       = dm->workin;
1672aa1993deSMatthew G Knepley     dm->workin = dm->workin->next;
1673aa1993deSMatthew G Knepley   } else {
16744dfa11a4SJacob Faibussowitsch     PetscCall(PetscNew(&link));
1675a89ea682SMatthew G Knepley   }
1676b77fa653SStefano Zampini   /* Avoid MPI_Type_size for most used datatypes
1677b77fa653SStefano Zampini      Get size directly */
1678b77fa653SStefano Zampini   if (dtype == MPIU_INT) dsize = sizeof(PetscInt);
1679b77fa653SStefano Zampini   else if (dtype == MPIU_REAL) dsize = sizeof(PetscReal);
1680b77fa653SStefano Zampini #if defined(PETSC_USE_64BIT_INDICES)
1681b77fa653SStefano Zampini   else if (dtype == MPI_INT) dsize = sizeof(int);
1682b77fa653SStefano Zampini #endif
1683b77fa653SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1684b77fa653SStefano Zampini   else if (dtype == MPIU_SCALAR) dsize = sizeof(PetscScalar);
1685b77fa653SStefano Zampini #endif
1686b77fa653SStefano Zampini   else PetscCallMPI(MPI_Type_size(dtype, &dsize));
1687b77fa653SStefano Zampini 
16885056fcd2SBarry Smith   if (((size_t)dsize * count) > link->bytes) {
16899566063dSJacob Faibussowitsch     PetscCall(PetscFree(link->mem));
16909566063dSJacob Faibussowitsch     PetscCall(PetscMalloc(dsize * count, &link->mem));
1691854ce69bSBarry Smith     link->bytes = dsize * count;
1692aa1993deSMatthew G Knepley   }
1693aa1993deSMatthew G Knepley   link->next  = dm->workout;
1694aa1993deSMatthew G Knepley   dm->workout = link;
1695cea3dcb8SSatish Balay #if defined(__MEMCHECK_H) && (defined(PLAT_amd64_linux) || defined(PLAT_x86_linux) || defined(PLAT_amd64_darwin))
169600d952a4SJed Brown   VALGRIND_MAKE_MEM_NOACCESS((char *)link->mem + (size_t)dsize * count, link->bytes - (size_t)dsize * count);
169700d952a4SJed Brown   VALGRIND_MAKE_MEM_UNDEFINED(link->mem, (size_t)dsize * count);
169800d952a4SJed Brown #endif
1699aa1993deSMatthew G Knepley   *(void **)mem = link->mem;
17003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1701a89ea682SMatthew G Knepley }
1702a89ea682SMatthew G Knepley 
1703aa1993deSMatthew G Knepley /*@C
1704bb7acecfSBarry Smith   DMRestoreWorkArray - Restores a work array obtained with `DMCreateWorkArray()`
1705aa1993deSMatthew G Knepley 
1706aa1993deSMatthew G Knepley   Not Collective
1707aa1993deSMatthew G Knepley 
1708aa1993deSMatthew G Knepley   Input Parameters:
1709bb7acecfSBarry Smith + dm    - the `DM` object
1710a5b23f4aSJose E. Roman . count - The minimum size
171120f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, `MPIU_INT`
1712aa1993deSMatthew G Knepley 
1713aa1993deSMatthew G Knepley   Output Parameter:
171460225df5SJacob Faibussowitsch . mem - the work array
1715aa1993deSMatthew G Knepley 
1716aa1993deSMatthew G Knepley   Level: developer
1717aa1993deSMatthew G Knepley 
171873ff1848SBarry Smith   Developer Note:
1719bb7acecfSBarry Smith   count and dtype are ignored, they are only needed for `DMGetWorkArray()`
1720147403d9SBarry Smith 
17211cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMGetWorkArray()`
1722aa1993deSMatthew G Knepley @*/
1723d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestoreWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem)
1724d71ae5a4SJacob Faibussowitsch {
1725aa1993deSMatthew G Knepley   DMWorkLink *p, link;
1726aa1993deSMatthew G Knepley 
1727aa1993deSMatthew G Knepley   PetscFunctionBegin;
1728aa1993deSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
17294f572ea9SToby Isaac   PetscAssertPointer(mem, 4);
1730a4e35b19SJacob Faibussowitsch   (void)count;
1731a4e35b19SJacob Faibussowitsch   (void)dtype;
1732442f3b32SStefano Zampini   if (!*(void **)mem) PetscFunctionReturn(PETSC_SUCCESS);
1733aa1993deSMatthew G Knepley   for (p = &dm->workout; (link = *p); p = &link->next) {
1734aa1993deSMatthew G Knepley     if (link->mem == *(void **)mem) {
1735aa1993deSMatthew G Knepley       *p            = link->next;
1736aa1993deSMatthew G Knepley       link->next    = dm->workin;
1737aa1993deSMatthew G Knepley       dm->workin    = link;
17380298fd71SBarry Smith       *(void **)mem = NULL;
17393ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1740aa1993deSMatthew G Knepley     }
1741aa1993deSMatthew G Knepley   }
1742aa1993deSMatthew G Knepley   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Array was not checked out");
1743aa1993deSMatthew G Knepley }
1744e7c4fc90SDmitry Karpeev 
17458cda7954SMatthew G. Knepley /*@C
1746bb7acecfSBarry Smith   DMSetNullSpaceConstructor - Provide a callback function which constructs the nullspace for a given field, defined with `DMAddField()`, when function spaces
1747bb7acecfSBarry Smith   are joined or split, such as in `DMCreateSubDM()`
17488cda7954SMatthew G. Knepley 
174920f4b53cSBarry Smith   Logically Collective; No Fortran Support
17508cda7954SMatthew G. Knepley 
17518cda7954SMatthew G. Knepley   Input Parameters:
1752bb7acecfSBarry Smith + dm     - The `DM`
17538cda7954SMatthew G. Knepley . field  - The field number for the nullspace
17548cda7954SMatthew G. Knepley - nullsp - A callback to create the nullspace
17558cda7954SMatthew G. Knepley 
175620f4b53cSBarry Smith   Calling sequence of `nullsp`:
1757bb7acecfSBarry Smith + dm        - The present `DM`
1758bb7acecfSBarry Smith . origField - The field number given above, in the original `DM`
1759147403d9SBarry Smith . field     - The field number in dm
1760147403d9SBarry Smith - nullSpace - The nullspace for the given field
17618cda7954SMatthew G. Knepley 
176249762cbcSSatish Balay   Level: intermediate
176349762cbcSSatish Balay 
17641cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
1765147403d9SBarry Smith @*/
1766a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1767d71ae5a4SJacob Faibussowitsch {
1768435a35e8SMatthew G Knepley   PetscFunctionBegin;
1769435a35e8SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
17707a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1771435a35e8SMatthew G Knepley   dm->nullspaceConstructors[field] = nullsp;
17723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1773435a35e8SMatthew G Knepley }
1774435a35e8SMatthew G Knepley 
17758cda7954SMatthew G. Knepley /*@C
1776bb7acecfSBarry Smith   DMGetNullSpaceConstructor - Return the callback function which constructs the nullspace for a given field, defined with `DMAddField()`
17778cda7954SMatthew G. Knepley 
177820f4b53cSBarry Smith   Not Collective; No Fortran Support
17798cda7954SMatthew G. Knepley 
17808cda7954SMatthew G. Knepley   Input Parameters:
1781bb7acecfSBarry Smith + dm    - The `DM`
17828cda7954SMatthew G. Knepley - field - The field number for the nullspace
17838cda7954SMatthew G. Knepley 
17848cda7954SMatthew G. Knepley   Output Parameter:
17858cda7954SMatthew G. Knepley . nullsp - A callback to create the nullspace
17868cda7954SMatthew G. Knepley 
178720f4b53cSBarry Smith   Calling sequence of `nullsp`:
1788147403d9SBarry Smith + dm        - The present DM
1789147403d9SBarry Smith . origField - The field number given above, in the original DM
1790147403d9SBarry Smith . field     - The field number in dm
1791147403d9SBarry Smith - nullSpace - The nullspace for the given field
17928cda7954SMatthew G. Knepley 
179349762cbcSSatish Balay   Level: intermediate
179449762cbcSSatish Balay 
17951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
1796147403d9SBarry Smith @*/
1797a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1798d71ae5a4SJacob Faibussowitsch {
17990a50eb56SMatthew G. Knepley   PetscFunctionBegin;
18000a50eb56SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
18014f572ea9SToby Isaac   PetscAssertPointer(nullsp, 3);
18027a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
18030a50eb56SMatthew G. Knepley   *nullsp = dm->nullspaceConstructors[field];
18043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18050a50eb56SMatthew G. Knepley }
18060a50eb56SMatthew G. Knepley 
18078cda7954SMatthew G. Knepley /*@C
1808bb7acecfSBarry Smith   DMSetNearNullSpaceConstructor - Provide a callback function which constructs the near-nullspace for a given field, defined with `DMAddField()`
18098cda7954SMatthew G. Knepley 
181020f4b53cSBarry Smith   Logically Collective; No Fortran Support
18118cda7954SMatthew G. Knepley 
18128cda7954SMatthew G. Knepley   Input Parameters:
1813bb7acecfSBarry Smith + dm     - The `DM`
18148cda7954SMatthew G. Knepley . field  - The field number for the nullspace
18158cda7954SMatthew G. Knepley - nullsp - A callback to create the near-nullspace
18168cda7954SMatthew G. Knepley 
181720f4b53cSBarry Smith   Calling sequence of `nullsp`:
1818bb7acecfSBarry Smith + dm        - The present `DM`
1819bb7acecfSBarry Smith . origField - The field number given above, in the original `DM`
1820147403d9SBarry Smith . field     - The field number in dm
1821147403d9SBarry Smith - nullSpace - The nullspace for the given field
18228cda7954SMatthew G. Knepley 
182349762cbcSSatish Balay   Level: intermediate
182449762cbcSSatish Balay 
18251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`,
1826bb7acecfSBarry Smith           `MatNullSpace`
1827147403d9SBarry Smith @*/
1828a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1829d71ae5a4SJacob Faibussowitsch {
1830f9d4088aSMatthew G. Knepley   PetscFunctionBegin;
1831f9d4088aSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
18327a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1833f9d4088aSMatthew G. Knepley   dm->nearnullspaceConstructors[field] = nullsp;
18343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1835f9d4088aSMatthew G. Knepley }
1836f9d4088aSMatthew G. Knepley 
18378cda7954SMatthew G. Knepley /*@C
1838bb7acecfSBarry Smith   DMGetNearNullSpaceConstructor - Return the callback function which constructs the near-nullspace for a given field, defined with `DMAddField()`
18398cda7954SMatthew G. Knepley 
184020f4b53cSBarry Smith   Not Collective; No Fortran Support
18418cda7954SMatthew G. Knepley 
18428cda7954SMatthew G. Knepley   Input Parameters:
1843bb7acecfSBarry Smith + dm    - The `DM`
18448cda7954SMatthew G. Knepley - field - The field number for the nullspace
18458cda7954SMatthew G. Knepley 
18468cda7954SMatthew G. Knepley   Output Parameter:
18478cda7954SMatthew G. Knepley . nullsp - A callback to create the near-nullspace
18488cda7954SMatthew G. Knepley 
184920f4b53cSBarry Smith   Calling sequence of `nullsp`:
1850bb7acecfSBarry Smith + dm        - The present `DM`
1851bb7acecfSBarry Smith . origField - The field number given above, in the original `DM`
1852147403d9SBarry Smith . field     - The field number in dm
1853147403d9SBarry Smith - nullSpace - The nullspace for the given field
18548cda7954SMatthew G. Knepley 
185549762cbcSSatish Balay   Level: intermediate
185649762cbcSSatish Balay 
18571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`,
1858bb7acecfSBarry Smith           `MatNullSpace`, `DMCreateSuperDM()`
1859147403d9SBarry Smith @*/
1860a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1861d71ae5a4SJacob Faibussowitsch {
1862f9d4088aSMatthew G. Knepley   PetscFunctionBegin;
1863f9d4088aSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
18644f572ea9SToby Isaac   PetscAssertPointer(nullsp, 3);
18657a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1866f9d4088aSMatthew G. Knepley   *nullsp = dm->nearnullspaceConstructors[field];
18673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1868f9d4088aSMatthew G. Knepley }
1869f9d4088aSMatthew G. Knepley 
18704f3b5142SJed Brown /*@C
1871bb7acecfSBarry Smith   DMCreateFieldIS - Creates a set of `IS` objects with the global indices of dofs for each field defined with `DMAddField()`
18724d343eeaSMatthew G Knepley 
187320f4b53cSBarry Smith   Not Collective; No Fortran Support
18744d343eeaSMatthew G Knepley 
18754d343eeaSMatthew G Knepley   Input Parameter:
1876bb7acecfSBarry Smith . dm - the `DM` object
18774d343eeaSMatthew G Knepley 
18784d343eeaSMatthew G Knepley   Output Parameters:
187920f4b53cSBarry Smith + numFields  - The number of fields (or `NULL` if not requested)
188020f4b53cSBarry Smith . fieldNames - The number of each field (or `NULL` if not requested)
188120f4b53cSBarry Smith - fields     - The global indices for each field (or `NULL` if not requested)
18824d343eeaSMatthew G Knepley 
18834d343eeaSMatthew G Knepley   Level: intermediate
18844d343eeaSMatthew G Knepley 
1885bb7acecfSBarry Smith   Note:
188673ff1848SBarry Smith   The user is responsible for freeing all requested arrays. In particular, every entry of `fieldNames` should be freed with
188773ff1848SBarry Smith   `PetscFree()`, every entry of `fields` should be destroyed with `ISDestroy()`, and both arrays should be freed with
1888bb7acecfSBarry Smith   `PetscFree()`.
188921c9b008SJed Brown 
189073ff1848SBarry Smith   Developer Note:
1891bb7acecfSBarry Smith   It is not clear why both this function and `DMCreateFieldDecomposition()` exist. Having two seems redundant and confusing. This function should
1892bb7acecfSBarry Smith   likely be removed.
1893bb7acecfSBarry Smith 
18941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
1895bb7acecfSBarry Smith           `DMCreateFieldDecomposition()`
18964d343eeaSMatthew G Knepley @*/
1897d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldIS(DM dm, PetscInt *numFields, char ***fieldNames, IS **fields)
1898d71ae5a4SJacob Faibussowitsch {
189937d0c07bSMatthew G Knepley   PetscSection section, sectionGlobal;
19004d343eeaSMatthew G Knepley 
19014d343eeaSMatthew G Knepley   PetscFunctionBegin;
19024d343eeaSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
190369ca1f37SDmitry Karpeev   if (numFields) {
19044f572ea9SToby Isaac     PetscAssertPointer(numFields, 2);
190569ca1f37SDmitry Karpeev     *numFields = 0;
190669ca1f37SDmitry Karpeev   }
190737d0c07bSMatthew G Knepley   if (fieldNames) {
19084f572ea9SToby Isaac     PetscAssertPointer(fieldNames, 3);
19090298fd71SBarry Smith     *fieldNames = NULL;
191069ca1f37SDmitry Karpeev   }
191169ca1f37SDmitry Karpeev   if (fields) {
19124f572ea9SToby Isaac     PetscAssertPointer(fields, 4);
19130298fd71SBarry Smith     *fields = NULL;
191469ca1f37SDmitry Karpeev   }
19159566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
191637d0c07bSMatthew G Knepley   if (section) {
19173a544194SStefano Zampini     PetscInt *fieldSizes, *fieldNc, **fieldIndices;
191837d0c07bSMatthew G Knepley     PetscInt  nF, f, pStart, pEnd, p;
191937d0c07bSMatthew G Knepley 
19209566063dSJacob Faibussowitsch     PetscCall(DMGetGlobalSection(dm, &sectionGlobal));
19219566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetNumFields(section, &nF));
19229566063dSJacob Faibussowitsch     PetscCall(PetscMalloc3(nF, &fieldSizes, nF, &fieldNc, nF, &fieldIndices));
19239566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd));
192437d0c07bSMatthew G Knepley     for (f = 0; f < nF; ++f) {
192537d0c07bSMatthew G Knepley       fieldSizes[f] = 0;
19269566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldComponents(section, f, &fieldNc[f]));
192737d0c07bSMatthew G Knepley     }
192837d0c07bSMatthew G Knepley     for (p = pStart; p < pEnd; ++p) {
192937d0c07bSMatthew G Knepley       PetscInt gdof;
193037d0c07bSMatthew G Knepley 
19319566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof));
193237d0c07bSMatthew G Knepley       if (gdof > 0) {
193337d0c07bSMatthew G Knepley         for (f = 0; f < nF; ++f) {
19343a544194SStefano Zampini           PetscInt fdof, fcdof, fpdof;
193537d0c07bSMatthew G Knepley 
19369566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof));
19379566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof));
19383a544194SStefano Zampini           fpdof = fdof - fcdof;
19393a544194SStefano Zampini           if (fpdof && fpdof != fieldNc[f]) {
19403a544194SStefano Zampini             /* Layout does not admit a pointwise block size */
19413a544194SStefano Zampini             fieldNc[f] = 1;
19423a544194SStefano Zampini           }
19433a544194SStefano Zampini           fieldSizes[f] += fpdof;
194437d0c07bSMatthew G Knepley         }
194537d0c07bSMatthew G Knepley       }
194637d0c07bSMatthew G Knepley     }
194737d0c07bSMatthew G Knepley     for (f = 0; f < nF; ++f) {
19489566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(fieldSizes[f], &fieldIndices[f]));
194937d0c07bSMatthew G Knepley       fieldSizes[f] = 0;
195037d0c07bSMatthew G Knepley     }
195137d0c07bSMatthew G Knepley     for (p = pStart; p < pEnd; ++p) {
195237d0c07bSMatthew G Knepley       PetscInt gdof, goff;
195337d0c07bSMatthew G Knepley 
19549566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof));
195537d0c07bSMatthew G Knepley       if (gdof > 0) {
19569566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(sectionGlobal, p, &goff));
195737d0c07bSMatthew G Knepley         for (f = 0; f < nF; ++f) {
195837d0c07bSMatthew G Knepley           PetscInt fdof, fcdof, fc;
195937d0c07bSMatthew G Knepley 
19609566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof));
19619566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof));
1962ad540459SPierre Jolivet           for (fc = 0; fc < fdof - fcdof; ++fc, ++fieldSizes[f]) fieldIndices[f][fieldSizes[f]] = goff++;
196337d0c07bSMatthew G Knepley         }
196437d0c07bSMatthew G Knepley       }
196537d0c07bSMatthew G Knepley     }
19668865f1eaSKarl Rupp     if (numFields) *numFields = nF;
196737d0c07bSMatthew G Knepley     if (fieldNames) {
19689566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nF, fieldNames));
196937d0c07bSMatthew G Knepley       for (f = 0; f < nF; ++f) {
197037d0c07bSMatthew G Knepley         const char *fieldName;
197137d0c07bSMatthew G Knepley 
19729566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetFieldName(section, f, &fieldName));
19739566063dSJacob Faibussowitsch         PetscCall(PetscStrallocpy(fieldName, (char **)&(*fieldNames)[f]));
197437d0c07bSMatthew G Knepley       }
197537d0c07bSMatthew G Knepley     }
197637d0c07bSMatthew G Knepley     if (fields) {
19779566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nF, fields));
197837d0c07bSMatthew G Knepley       for (f = 0; f < nF; ++f) {
19793a544194SStefano Zampini         PetscInt bs, in[2], out[2];
19803a544194SStefano Zampini 
19819566063dSJacob Faibussowitsch         PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), fieldSizes[f], fieldIndices[f], PETSC_OWN_POINTER, &(*fields)[f]));
19823a544194SStefano Zampini         in[0] = -fieldNc[f];
19833a544194SStefano Zampini         in[1] = fieldNc[f];
19841c2dc1cbSBarry Smith         PetscCall(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm)));
19853a544194SStefano Zampini         bs = (-out[0] == out[1]) ? out[1] : 1;
19869566063dSJacob Faibussowitsch         PetscCall(ISSetBlockSize((*fields)[f], bs));
198737d0c07bSMatthew G Knepley       }
198837d0c07bSMatthew G Knepley     }
19899566063dSJacob Faibussowitsch     PetscCall(PetscFree3(fieldSizes, fieldNc, fieldIndices));
1990dbbe0bcdSBarry Smith   } else PetscTryTypeMethod(dm, createfieldis, numFields, fieldNames, fields);
19913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
19924d343eeaSMatthew G Knepley }
19934d343eeaSMatthew G Knepley 
199416621825SDmitry Karpeev /*@C
1995bb7acecfSBarry Smith   DMCreateFieldDecomposition - Returns a list of `IS` objects defining a decomposition of a problem into subproblems
1996a4e35b19SJacob Faibussowitsch   corresponding to different fields.
1997e7c4fc90SDmitry Karpeev 
199820f4b53cSBarry Smith   Not Collective; No Fortran Support
1999e7c4fc90SDmitry Karpeev 
2000e7c4fc90SDmitry Karpeev   Input Parameter:
2001bb7acecfSBarry Smith . dm - the `DM` object
2002e7c4fc90SDmitry Karpeev 
2003e7c4fc90SDmitry Karpeev   Output Parameters:
200420f4b53cSBarry Smith + len      - The number of fields (or `NULL` if not requested)
200520f4b53cSBarry Smith . namelist - The name for each field (or `NULL` if not requested)
200620f4b53cSBarry Smith . islist   - The global indices for each field (or `NULL` if not requested)
200720f4b53cSBarry Smith - dmlist   - The `DM`s for each field subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined)
2008e7c4fc90SDmitry Karpeev 
2009e7c4fc90SDmitry Karpeev   Level: intermediate
2010e7c4fc90SDmitry Karpeev 
2011a4e35b19SJacob Faibussowitsch   Notes:
2012a4e35b19SJacob Faibussowitsch   Each `IS` contains the global indices of the dofs of the corresponding field, defined by
2013a4e35b19SJacob Faibussowitsch   `DMAddField()`. The optional list of `DM`s define the `DM` for each subproblem.
2014a4e35b19SJacob Faibussowitsch 
2015a4e35b19SJacob Faibussowitsch   The same as `DMCreateFieldIS()` but also returns a `DM` for each field.
2016a4e35b19SJacob Faibussowitsch 
201773ff1848SBarry Smith   The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with
201873ff1848SBarry Smith   `PetscFree()`, every entry of `islist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`,
2019bb7acecfSBarry Smith   and all of the arrays should be freed with `PetscFree()`.
2020e7c4fc90SDmitry Karpeev 
202160225df5SJacob Faibussowitsch   Developer Notes:
2022bb7acecfSBarry Smith   It is not clear why this function and `DMCreateFieldIS()` exist. Having two seems redundant and confusing.
2023bb7acecfSBarry Smith 
202473ff1848SBarry Smith   Unlike  `DMRefine()`, `DMCoarsen()`, and `DMCreateDomainDecomposition()` this provides no mechanism to provide hooks that are called after the
202573ff1848SBarry Smith   decomposition is computed.
202673ff1848SBarry Smith 
202773ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMCreateFieldIS()`, `DMCreateSubDM()`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`
2028e7c4fc90SDmitry Karpeev @*/
2029d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldDecomposition(DM dm, PetscInt *len, char ***namelist, IS **islist, DM **dmlist)
2030d71ae5a4SJacob Faibussowitsch {
2031e7c4fc90SDmitry Karpeev   PetscFunctionBegin;
2032e7c4fc90SDmitry Karpeev   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
20338865f1eaSKarl Rupp   if (len) {
20344f572ea9SToby Isaac     PetscAssertPointer(len, 2);
20358865f1eaSKarl Rupp     *len = 0;
20368865f1eaSKarl Rupp   }
20378865f1eaSKarl Rupp   if (namelist) {
20384f572ea9SToby Isaac     PetscAssertPointer(namelist, 3);
2039ea78f98cSLisandro Dalcin     *namelist = NULL;
20408865f1eaSKarl Rupp   }
20418865f1eaSKarl Rupp   if (islist) {
20424f572ea9SToby Isaac     PetscAssertPointer(islist, 4);
2043ea78f98cSLisandro Dalcin     *islist = NULL;
20448865f1eaSKarl Rupp   }
20458865f1eaSKarl Rupp   if (dmlist) {
20464f572ea9SToby Isaac     PetscAssertPointer(dmlist, 5);
2047ea78f98cSLisandro Dalcin     *dmlist = NULL;
20488865f1eaSKarl Rupp   }
2049f3f0edfdSDmitry Karpeev   /*
2050f3f0edfdSDmitry Karpeev    Is it a good idea to apply the following check across all impls?
2051f3f0edfdSDmitry Karpeev    Perhaps some impls can have a well-defined decomposition before DMSetUp?
2052f3f0edfdSDmitry Karpeev    This, however, follows the general principle that accessors are not well-behaved until the object is set up.
2053f3f0edfdSDmitry Karpeev    */
20547a8be351SBarry Smith   PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp");
205516621825SDmitry Karpeev   if (!dm->ops->createfielddecomposition) {
2056435a35e8SMatthew G Knepley     PetscSection section;
2057435a35e8SMatthew G Knepley     PetscInt     numFields, f;
2058435a35e8SMatthew G Knepley 
20599566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
20609566063dSJacob Faibussowitsch     if (section) PetscCall(PetscSectionGetNumFields(section, &numFields));
2061435a35e8SMatthew G Knepley     if (section && numFields && dm->ops->createsubdm) {
2062f25d98f1SMatthew G. Knepley       if (len) *len = numFields;
20639566063dSJacob Faibussowitsch       if (namelist) PetscCall(PetscMalloc1(numFields, namelist));
20649566063dSJacob Faibussowitsch       if (islist) PetscCall(PetscMalloc1(numFields, islist));
20659566063dSJacob Faibussowitsch       if (dmlist) PetscCall(PetscMalloc1(numFields, dmlist));
2066435a35e8SMatthew G Knepley       for (f = 0; f < numFields; ++f) {
2067435a35e8SMatthew G Knepley         const char *fieldName;
2068435a35e8SMatthew G Knepley 
20699566063dSJacob Faibussowitsch         PetscCall(DMCreateSubDM(dm, 1, &f, islist ? &(*islist)[f] : NULL, dmlist ? &(*dmlist)[f] : NULL));
207003dc3394SMatthew G. Knepley         if (namelist) {
20719566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldName(section, f, &fieldName));
20729566063dSJacob Faibussowitsch           PetscCall(PetscStrallocpy(fieldName, (char **)&(*namelist)[f]));
2073435a35e8SMatthew G Knepley         }
207403dc3394SMatthew G. Knepley       }
2075435a35e8SMatthew G Knepley     } else {
20769566063dSJacob Faibussowitsch       PetscCall(DMCreateFieldIS(dm, len, namelist, islist));
2077e7c4fc90SDmitry Karpeev       /* By default there are no DMs associated with subproblems. */
20780298fd71SBarry Smith       if (dmlist) *dmlist = NULL;
2079e7c4fc90SDmitry Karpeev     }
2080dbbe0bcdSBarry Smith   } else PetscUseTypeMethod(dm, createfielddecomposition, len, namelist, islist, dmlist);
20813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
208216621825SDmitry Karpeev }
208316621825SDmitry Karpeev 
2084412a4547SAlexis Marboeuf /*@C
208520f4b53cSBarry Smith   DMCreateSubDM - Returns an `IS` and `DM` encapsulating a subproblem defined by the fields passed in.
208620f4b53cSBarry Smith   The fields are defined by `DMCreateFieldIS()`.
2087435a35e8SMatthew G Knepley 
2088435a35e8SMatthew G Knepley   Not collective
2089435a35e8SMatthew G Knepley 
2090435a35e8SMatthew G Knepley   Input Parameters:
2091bb7acecfSBarry Smith + dm        - The `DM` object
2092bb7acecfSBarry Smith . numFields - The number of fields to select
20932adcc780SMatthew G. Knepley - fields    - The field numbers of the selected fields
2094435a35e8SMatthew G Knepley 
2095435a35e8SMatthew G Knepley   Output Parameters:
2096bb7acecfSBarry Smith + is    - The global indices for all the degrees of freedom in the new sub `DM`
2097bb7acecfSBarry Smith - subdm - The `DM` for the subproblem
2098435a35e8SMatthew G Knepley 
209920f4b53cSBarry Smith   Level: intermediate
210020f4b53cSBarry Smith 
2101bb7acecfSBarry Smith   Note:
2102bb7acecfSBarry Smith   You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed
21035d3b26e6SMatthew G. Knepley 
210460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateFieldIS()`, `DMCreateFieldDecomposition()`, `DMAddField()`, `DMCreateSuperDM()`, `IS`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
2105435a35e8SMatthew G Knepley @*/
2106d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSubDM(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm)
2107d71ae5a4SJacob Faibussowitsch {
2108435a35e8SMatthew G Knepley   PetscFunctionBegin;
2109435a35e8SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
21104f572ea9SToby Isaac   PetscAssertPointer(fields, 3);
21114f572ea9SToby Isaac   if (is) PetscAssertPointer(is, 4);
21124f572ea9SToby Isaac   if (subdm) PetscAssertPointer(subdm, 5);
2113dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createsubdm, numFields, fields, is, subdm);
21143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2115435a35e8SMatthew G Knepley }
2116435a35e8SMatthew G Knepley 
21172adcc780SMatthew G. Knepley /*@C
2118bb7acecfSBarry Smith   DMCreateSuperDM - Returns an arrays of `IS` and `DM` encapsulating a superproblem defined by multiple `DM`s passed in.
21192adcc780SMatthew G. Knepley 
21202adcc780SMatthew G. Knepley   Not collective
21212adcc780SMatthew G. Knepley 
2122d8d19677SJose E. Roman   Input Parameters:
2123bb7acecfSBarry Smith + dms - The `DM` objects
2124bb7acecfSBarry Smith - n   - The number of `DM`s
21252adcc780SMatthew G. Knepley 
21262adcc780SMatthew G. Knepley   Output Parameters:
2127bb7acecfSBarry Smith + is      - The global indices for each of subproblem within the super `DM`, or NULL
2128bb7acecfSBarry Smith - superdm - The `DM` for the superproblem
21292adcc780SMatthew G. Knepley 
213020f4b53cSBarry Smith   Level: intermediate
213120f4b53cSBarry Smith 
2132bb7acecfSBarry Smith   Note:
2133bb7acecfSBarry Smith   You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed
21345d3b26e6SMatthew G. Knepley 
213573ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateSubDM()`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`, `DMCreateDomainDecomposition()`
21362adcc780SMatthew G. Knepley @*/
2137d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSuperDM(DM dms[], PetscInt n, IS **is, DM *superdm)
2138d71ae5a4SJacob Faibussowitsch {
21392adcc780SMatthew G. Knepley   PetscInt i;
21402adcc780SMatthew G. Knepley 
21412adcc780SMatthew G. Knepley   PetscFunctionBegin;
21424f572ea9SToby Isaac   PetscAssertPointer(dms, 1);
2143ad540459SPierre Jolivet   for (i = 0; i < n; ++i) PetscValidHeaderSpecific(dms[i], DM_CLASSID, 1);
21444f572ea9SToby Isaac   if (is) PetscAssertPointer(is, 3);
21454f572ea9SToby Isaac   PetscAssertPointer(superdm, 4);
2146bb7acecfSBarry Smith   PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of DMs must be nonnegative: %" PetscInt_FMT, n);
2147bb7acecfSBarry Smith   if (n) {
2148b9d85ea2SLisandro Dalcin     DM dm = dms[0];
214900045ab3SPierre Jolivet     PetscCheck(dm->ops->createsuperdm, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No method createsuperdm for DM of type %s", ((PetscObject)dm)->type_name);
2150dbbe0bcdSBarry Smith     PetscCall((*dm->ops->createsuperdm)(dms, n, is, superdm));
21512adcc780SMatthew G. Knepley   }
21523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21532adcc780SMatthew G. Knepley }
21542adcc780SMatthew G. Knepley 
215516621825SDmitry Karpeev /*@C
2156a4e35b19SJacob Faibussowitsch   DMCreateDomainDecomposition - Returns lists of `IS` objects defining a decomposition of a
2157a4e35b19SJacob Faibussowitsch   problem into subproblems corresponding to restrictions to pairs of nested subdomains.
215816621825SDmitry Karpeev 
215920f4b53cSBarry Smith   Not Collective
216016621825SDmitry Karpeev 
216116621825SDmitry Karpeev   Input Parameter:
2162bb7acecfSBarry Smith . dm - the `DM` object
216316621825SDmitry Karpeev 
216416621825SDmitry Karpeev   Output Parameters:
216520f4b53cSBarry Smith + n           - The number of subproblems in the domain decomposition (or `NULL` if not requested)
216620f4b53cSBarry Smith . namelist    - The name for each subdomain (or `NULL` if not requested)
216773ff1848SBarry Smith . innerislist - The global indices for each inner subdomain (or `NULL`, if not requested)
216873ff1848SBarry Smith . outerislist - The global indices for each outer subdomain (or `NULL`, if not requested)
216973ff1848SBarry Smith - dmlist      - The `DM`s for each subdomain subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined)
217016621825SDmitry Karpeev 
217116621825SDmitry Karpeev   Level: intermediate
217216621825SDmitry Karpeev 
217373ff1848SBarry Smith   Notes:
2174a4e35b19SJacob Faibussowitsch   Each `IS` contains the global indices of the dofs of the corresponding subdomains with in the
2175a4e35b19SJacob Faibussowitsch   dofs of the original `DM`. The inner subdomains conceptually define a nonoverlapping
2176a4e35b19SJacob Faibussowitsch   covering, while outer subdomains can overlap.
2177a4e35b19SJacob Faibussowitsch 
2178a4e35b19SJacob Faibussowitsch   The optional list of `DM`s define a `DM` for each subproblem.
2179a4e35b19SJacob Faibussowitsch 
218073ff1848SBarry Smith   The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with
218173ff1848SBarry Smith   `PetscFree()`, every entry of `innerislist` and `outerislist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`,
2182bb7acecfSBarry Smith   and all of the arrays should be freed with `PetscFree()`.
218316621825SDmitry Karpeev 
2184a4e35b19SJacob Faibussowitsch   Developer Notes:
218520f4b53cSBarry Smith   The `dmlist` is for the inner subdomains or the outer subdomains or all subdomains?
2186bb7acecfSBarry Smith 
218773ff1848SBarry Smith   The names are inconsistent, the hooks use `DMSubDomainHook` which is nothing like `DMCreateDomainDecomposition()` while `DMRefineHook` is used for `DMRefine()`.
218873ff1848SBarry Smith 
218973ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateFieldDecomposition()`, `DMDestroy()`, `DMCreateDomainDecompositionScatters()`, `DMView()`, `DMCreateInterpolation()`,
219073ff1848SBarry Smith           `DMSubDomainHookAdd()`, `DMSubDomainHookRemove()`,`DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`
219116621825SDmitry Karpeev @*/
2192d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecomposition(DM dm, PetscInt *n, char ***namelist, IS **innerislist, IS **outerislist, DM **dmlist)
2193d71ae5a4SJacob Faibussowitsch {
2194be081cd6SPeter Brune   DMSubDomainHookLink link;
2195be081cd6SPeter Brune   PetscInt            i, l;
219616621825SDmitry Karpeev 
219716621825SDmitry Karpeev   PetscFunctionBegin;
219816621825SDmitry Karpeev   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
21999371c9d4SSatish Balay   if (n) {
22004f572ea9SToby Isaac     PetscAssertPointer(n, 2);
22019371c9d4SSatish Balay     *n = 0;
22029371c9d4SSatish Balay   }
22039371c9d4SSatish Balay   if (namelist) {
22044f572ea9SToby Isaac     PetscAssertPointer(namelist, 3);
22059371c9d4SSatish Balay     *namelist = NULL;
22069371c9d4SSatish Balay   }
22079371c9d4SSatish Balay   if (innerislist) {
22084f572ea9SToby Isaac     PetscAssertPointer(innerislist, 4);
22099371c9d4SSatish Balay     *innerislist = NULL;
22109371c9d4SSatish Balay   }
22119371c9d4SSatish Balay   if (outerislist) {
22124f572ea9SToby Isaac     PetscAssertPointer(outerislist, 5);
22139371c9d4SSatish Balay     *outerislist = NULL;
22149371c9d4SSatish Balay   }
22159371c9d4SSatish Balay   if (dmlist) {
22164f572ea9SToby Isaac     PetscAssertPointer(dmlist, 6);
22179371c9d4SSatish Balay     *dmlist = NULL;
22189371c9d4SSatish Balay   }
2219f3f0edfdSDmitry Karpeev   /*
2220f3f0edfdSDmitry Karpeev    Is it a good idea to apply the following check across all impls?
2221f3f0edfdSDmitry Karpeev    Perhaps some impls can have a well-defined decomposition before DMSetUp?
2222f3f0edfdSDmitry Karpeev    This, however, follows the general principle that accessors are not well-behaved until the object is set up.
2223f3f0edfdSDmitry Karpeev    */
22247a8be351SBarry Smith   PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp");
222516621825SDmitry Karpeev   if (dm->ops->createdomaindecomposition) {
2226dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm, createdomaindecomposition, &l, namelist, innerislist, outerislist, dmlist);
222714a18fd3SPeter Brune     /* copy subdomain hooks and context over to the subdomain DMs */
2228f891f5b9SPatrick Sanan     if (dmlist && *dmlist) {
2229be081cd6SPeter Brune       for (i = 0; i < l; i++) {
2230be081cd6SPeter Brune         for (link = dm->subdomainhook; link; link = link->next) {
22319566063dSJacob Faibussowitsch           if (link->ddhook) PetscCall((*link->ddhook)(dm, (*dmlist)[i], link->ctx));
2232be081cd6SPeter Brune         }
2233648262bbSPatrick Sanan         if (dm->ctx) (*dmlist)[i]->ctx = dm->ctx;
2234e7c4fc90SDmitry Karpeev       }
223514a18fd3SPeter Brune     }
2236bb7acecfSBarry Smith     if (n) *n = l;
223714a18fd3SPeter Brune   }
22383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2239e30e807fSPeter Brune }
2240e30e807fSPeter Brune 
2241e30e807fSPeter Brune /*@C
224273ff1848SBarry Smith   DMCreateDomainDecompositionScatters - Returns scatters to the subdomain vectors from the global vector for subdomains created with
224373ff1848SBarry Smith   `DMCreateDomainDecomposition()`
2244e30e807fSPeter Brune 
224520f4b53cSBarry Smith   Not Collective
2246e30e807fSPeter Brune 
2247e30e807fSPeter Brune   Input Parameters:
2248bb7acecfSBarry Smith + dm     - the `DM` object
224973ff1848SBarry Smith . n      - the number of subdomains
2250e30e807fSPeter Brune - subdms - the local subdomains
2251e30e807fSPeter Brune 
2252e30e807fSPeter Brune   Output Parameters:
22536b867d5aSJose E. Roman + iscat - scatter from global vector to nonoverlapping global vector entries on subdomain
2254e30e807fSPeter Brune . oscat - scatter from global vector to overlapping global vector entries on subdomain
2255e30e807fSPeter Brune - gscat - scatter from global vector to local vector on subdomain (fills in ghosts)
2256e30e807fSPeter Brune 
225720f4b53cSBarry Smith   Level: developer
225820f4b53cSBarry Smith 
2259bb7acecfSBarry Smith   Note:
2260bb7acecfSBarry Smith   This is an alternative to the iis and ois arguments in `DMCreateDomainDecomposition()` that allow for the solution
2261e30e807fSPeter Brune   of general nonlinear problems with overlapping subdomain methods.  While merely having index sets that enable subsets
2262e30e807fSPeter Brune   of the residual equations to be created is fine for linear problems, nonlinear problems require local assembly of
2263e30e807fSPeter Brune   solution and residual data.
2264e30e807fSPeter Brune 
226573ff1848SBarry Smith   Developer Note:
2266a4e35b19SJacob Faibussowitsch   Can the subdms input be anything or are they exactly the `DM` obtained from
2267a4e35b19SJacob Faibussowitsch   `DMCreateDomainDecomposition()`?
2268bb7acecfSBarry Smith 
22691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`
2270e30e807fSPeter Brune @*/
2271d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecompositionScatters(DM dm, PetscInt n, DM *subdms, VecScatter **iscat, VecScatter **oscat, VecScatter **gscat)
2272d71ae5a4SJacob Faibussowitsch {
2273e30e807fSPeter Brune   PetscFunctionBegin;
2274e30e807fSPeter Brune   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
22754f572ea9SToby Isaac   PetscAssertPointer(subdms, 3);
2276dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createddscatters, n, subdms, iscat, oscat, gscat);
22773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2278e7c4fc90SDmitry Karpeev }
2279e7c4fc90SDmitry Karpeev 
228047c6ae99SBarry Smith /*@
2281bb7acecfSBarry Smith   DMRefine - Refines a `DM` object using a standard nonadaptive refinement of the underlying mesh
228247c6ae99SBarry Smith 
228320f4b53cSBarry Smith   Collective
228447c6ae99SBarry Smith 
2285d8d19677SJose E. Roman   Input Parameters:
2286bb7acecfSBarry Smith + dm   - the `DM` object
2287bb7acecfSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`)
228847c6ae99SBarry Smith 
228947c6ae99SBarry Smith   Output Parameter:
229020f4b53cSBarry Smith . dmf - the refined `DM`, or `NULL`
2291ae0a1c52SMatthew G Knepley 
229220f4b53cSBarry Smith   Options Database Key:
2293412e9a14SMatthew G. Knepley . -dm_plex_cell_refiner <strategy> - chooses the refinement strategy, e.g. regular, tohex
2294412e9a14SMatthew G. Knepley 
229547c6ae99SBarry Smith   Level: developer
229647c6ae99SBarry Smith 
229720f4b53cSBarry Smith   Note:
229820f4b53cSBarry Smith   If no refinement was done, the return value is `NULL`
229920f4b53cSBarry Smith 
230073ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`,
230173ff1848SBarry Smith           `DMRefineHookAdd()`, `DMRefineHookRemove()`
230247c6ae99SBarry Smith @*/
2303d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefine(DM dm, MPI_Comm comm, DM *dmf)
2304d71ae5a4SJacob Faibussowitsch {
2305c833c3b5SJed Brown   DMRefineHookLink link;
230647c6ae99SBarry Smith 
230747c6ae99SBarry Smith   PetscFunctionBegin;
2308732e2eb9SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
23099566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_Refine, dm, 0, 0, 0));
2310dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, refine, comm, dmf);
23114057135bSMatthew G Knepley   if (*dmf) {
231243842a1eSJed Brown     (*dmf)->ops->creatematrix = dm->ops->creatematrix;
23138865f1eaSKarl Rupp 
23149566063dSJacob Faibussowitsch     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmf));
23158865f1eaSKarl Rupp 
2316644e2e5bSBarry Smith     (*dmf)->ctx       = dm->ctx;
23170598a293SJed Brown     (*dmf)->leveldown = dm->leveldown;
2318656b349aSBarry Smith     (*dmf)->levelup   = dm->levelup + 1;
23198865f1eaSKarl Rupp 
23209566063dSJacob Faibussowitsch     PetscCall(DMSetMatType(*dmf, dm->mattype));
2321c833c3b5SJed Brown     for (link = dm->refinehook; link; link = link->next) {
23221baa6e33SBarry Smith       if (link->refinehook) PetscCall((*link->refinehook)(dm, *dmf, link->ctx));
2323c833c3b5SJed Brown     }
2324c833c3b5SJed Brown   }
23259566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_Refine, dm, 0, 0, 0));
23263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2327c833c3b5SJed Brown }
2328c833c3b5SJed Brown 
2329bb9467b5SJed Brown /*@C
2330c833c3b5SJed Brown   DMRefineHookAdd - adds a callback to be run when interpolating a nonlinear problem to a finer grid
2331c833c3b5SJed Brown 
233220f4b53cSBarry Smith   Logically Collective; No Fortran Support
2333c833c3b5SJed Brown 
23344165533cSJose E. Roman   Input Parameters:
2335bb7acecfSBarry Smith + coarse     - `DM` on which to run a hook when interpolating to a finer level
2336bb7acecfSBarry Smith . refinehook - function to run when setting up the finer level
2337f826b5fcSPierre Jolivet . interphook - function to run to update data on finer levels (once per `SNESSolve()`)
233820f4b53cSBarry Smith - ctx        - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2339c833c3b5SJed Brown 
234020f4b53cSBarry Smith   Calling sequence of `refinehook`:
2341bb7acecfSBarry Smith + coarse - coarse level `DM`
2342bb7acecfSBarry Smith . fine   - fine level `DM` to interpolate problem to
2343c833c3b5SJed Brown - ctx    - optional user-defined function context
2344c833c3b5SJed Brown 
234520f4b53cSBarry Smith   Calling sequence of `interphook`:
2346bb7acecfSBarry Smith + coarse - coarse level `DM`
2347c833c3b5SJed Brown . interp - matrix interpolating a coarse-level solution to the finer grid
2348bb7acecfSBarry Smith . fine   - fine level `DM` to update
2349c833c3b5SJed Brown - ctx    - optional user-defined function context
2350c833c3b5SJed Brown 
2351c833c3b5SJed Brown   Level: advanced
2352c833c3b5SJed Brown 
2353c833c3b5SJed Brown   Notes:
2354bb7acecfSBarry Smith   This function is only needed if auxiliary data that is attached to the `DM`s via, for example, `PetscObjectCompose()`, needs to be
2355bb7acecfSBarry Smith   passed to fine grids while grid sequencing.
2356bb7acecfSBarry Smith 
2357bb7acecfSBarry Smith   The actual interpolation is done when `DMInterpolate()` is called.
2358c833c3b5SJed Brown 
2359c833c3b5SJed Brown   If this function is called multiple times, the hooks will be run in the order they are added.
2360c833c3b5SJed Brown 
23611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2362c833c3b5SJed Brown @*/
2363a4e35b19SJacob Faibussowitsch PetscErrorCode DMRefineHookAdd(DM coarse, PetscErrorCode (*refinehook)(DM coarse, DM fine, void *ctx), PetscErrorCode (*interphook)(DM coarse, Mat interp, DM fine, void *ctx), void *ctx)
2364d71ae5a4SJacob Faibussowitsch {
2365c833c3b5SJed Brown   DMRefineHookLink link, *p;
2366c833c3b5SJed Brown 
2367c833c3b5SJed Brown   PetscFunctionBegin;
2368c833c3b5SJed Brown   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
23693d8e3701SJed Brown   for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
23703ba16761SJacob Faibussowitsch     if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
23713d8e3701SJed Brown   }
23729566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
2373c833c3b5SJed Brown   link->refinehook = refinehook;
2374c833c3b5SJed Brown   link->interphook = interphook;
2375c833c3b5SJed Brown   link->ctx        = ctx;
23760298fd71SBarry Smith   link->next       = NULL;
2377c833c3b5SJed Brown   *p               = link;
23783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2379c833c3b5SJed Brown }
2380c833c3b5SJed Brown 
23813d8e3701SJed Brown /*@C
2382bb7acecfSBarry Smith   DMRefineHookRemove - remove a callback from the list of hooks, that have been set with `DMRefineHookAdd()`, to be run when interpolating
2383bb7acecfSBarry Smith   a nonlinear problem to a finer grid
23843d8e3701SJed Brown 
238520f4b53cSBarry Smith   Logically Collective; No Fortran Support
23863d8e3701SJed Brown 
23874165533cSJose E. Roman   Input Parameters:
2388bb7acecfSBarry Smith + coarse     - the `DM` on which to run a hook when restricting to a coarser level
2389bb7acecfSBarry Smith . refinehook - function to run when setting up a finer level
2390bb7acecfSBarry Smith . interphook - function to run to update data on finer levels
239120f4b53cSBarry Smith - ctx        - [optional] user-defined context for provide data for the hooks (may be `NULL`)
23923d8e3701SJed Brown 
23933d8e3701SJed Brown   Level: advanced
23943d8e3701SJed Brown 
2395bb7acecfSBarry Smith   Note:
23963d8e3701SJed Brown   This function does nothing if the hook is not in the list.
23973d8e3701SJed Brown 
23981cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `DMCoarsenHookRemove()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
23993d8e3701SJed Brown @*/
2400d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookRemove(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx)
2401d71ae5a4SJacob Faibussowitsch {
24023d8e3701SJed Brown   DMRefineHookLink link, *p;
24033d8e3701SJed Brown 
24043d8e3701SJed Brown   PetscFunctionBegin;
24053d8e3701SJed Brown   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
24063d8e3701SJed Brown   for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Search the list of current hooks */
24073d8e3701SJed Brown     if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) {
24083d8e3701SJed Brown       link = *p;
24093d8e3701SJed Brown       *p   = link->next;
24109566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
24113d8e3701SJed Brown       break;
24123d8e3701SJed Brown     }
24133d8e3701SJed Brown   }
24143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24153d8e3701SJed Brown }
24163d8e3701SJed Brown 
2417c833c3b5SJed Brown /*@
2418bb7acecfSBarry Smith   DMInterpolate - interpolates user-defined problem data attached to a `DM` to a finer `DM` by running hooks registered by `DMRefineHookAdd()`
2419c833c3b5SJed Brown 
2420c833c3b5SJed Brown   Collective if any hooks are
2421c833c3b5SJed Brown 
24224165533cSJose E. Roman   Input Parameters:
2423bb7acecfSBarry Smith + coarse - coarser `DM` to use as a base
2424bb7acecfSBarry Smith . interp - interpolation matrix, apply using `MatInterpolate()`
2425bb7acecfSBarry Smith - fine   - finer `DM` to update
2426c833c3b5SJed Brown 
2427c833c3b5SJed Brown   Level: developer
2428c833c3b5SJed Brown 
242973ff1848SBarry Smith   Developer Note:
2430bb7acecfSBarry Smith   This routine is called `DMInterpolate()` while the hook is called `DMRefineHookAdd()`. It would be better to have an
2431bb7acecfSBarry Smith   an API with consistent terminology.
2432bb7acecfSBarry Smith 
24331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `MatInterpolate()`
2434c833c3b5SJed Brown @*/
2435d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolate(DM coarse, Mat interp, DM fine)
2436d71ae5a4SJacob Faibussowitsch {
2437c833c3b5SJed Brown   DMRefineHookLink link;
2438c833c3b5SJed Brown 
2439c833c3b5SJed Brown   PetscFunctionBegin;
2440c833c3b5SJed Brown   for (link = fine->refinehook; link; link = link->next) {
24411baa6e33SBarry Smith     if (link->interphook) PetscCall((*link->interphook)(coarse, interp, fine, link->ctx));
24424057135bSMatthew G Knepley   }
24433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
244447c6ae99SBarry Smith }
244547c6ae99SBarry Smith 
2446eb3f98d2SBarry Smith /*@
24471f3379b2SToby Isaac   DMInterpolateSolution - Interpolates a solution from a coarse mesh to a fine mesh.
24481f3379b2SToby Isaac 
244920f4b53cSBarry Smith   Collective
24501f3379b2SToby Isaac 
24514165533cSJose E. Roman   Input Parameters:
2452bb7acecfSBarry Smith + coarse    - coarse `DM`
2453bb7acecfSBarry Smith . fine      - fine `DM`
2454bb7acecfSBarry Smith . interp    - (optional) the matrix computed by `DMCreateInterpolation()`.  Implementations may not need this, but if it
2455bb7acecfSBarry Smith             is available it can avoid some recomputation.  If it is provided, `MatInterpolate()` will be used if
2456bb7acecfSBarry Smith             the coarse `DM` does not have a specialized implementation.
24571f3379b2SToby Isaac - coarseSol - solution on the coarse mesh
24581f3379b2SToby Isaac 
24594165533cSJose E. Roman   Output Parameter:
24601f3379b2SToby Isaac . fineSol - the interpolation of coarseSol to the fine mesh
24611f3379b2SToby Isaac 
24621f3379b2SToby Isaac   Level: developer
24631f3379b2SToby Isaac 
2464bb7acecfSBarry Smith   Note:
2465bb7acecfSBarry Smith   This function exists because the interpolation of a solution vector between meshes is not always a linear
24661f3379b2SToby Isaac   map.  For example, if a boundary value problem has an inhomogeneous Dirichlet boundary condition that is compressed
24671f3379b2SToby Isaac   out of the solution vector.  Or if interpolation is inherently a nonlinear operation, such as a method using
24681f3379b2SToby Isaac   slope-limiting reconstruction.
24691f3379b2SToby Isaac 
247073ff1848SBarry Smith   Developer Note:
2471bb7acecfSBarry Smith   This doesn't just interpolate "solutions" so its API name is questionable.
2472bb7acecfSBarry Smith 
24731cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMInterpolate()`, `DMCreateInterpolation()`
24741f3379b2SToby Isaac @*/
2475d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolateSolution(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol)
2476d71ae5a4SJacob Faibussowitsch {
24771f3379b2SToby Isaac   PetscErrorCode (*interpsol)(DM, DM, Mat, Vec, Vec) = NULL;
24781f3379b2SToby Isaac 
24791f3379b2SToby Isaac   PetscFunctionBegin;
24801f3379b2SToby Isaac   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
24811f3379b2SToby Isaac   if (interp) PetscValidHeaderSpecific(interp, MAT_CLASSID, 3);
24821f3379b2SToby Isaac   PetscValidHeaderSpecific(coarseSol, VEC_CLASSID, 4);
24831f3379b2SToby Isaac   PetscValidHeaderSpecific(fineSol, VEC_CLASSID, 5);
24841f3379b2SToby Isaac 
24859566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)coarse, "DMInterpolateSolution_C", &interpsol));
24861f3379b2SToby Isaac   if (interpsol) {
24879566063dSJacob Faibussowitsch     PetscCall((*interpsol)(coarse, fine, interp, coarseSol, fineSol));
24881f3379b2SToby Isaac   } else if (interp) {
24899566063dSJacob Faibussowitsch     PetscCall(MatInterpolate(interp, coarseSol, fineSol));
249098921bdaSJacob Faibussowitsch   } else SETERRQ(PetscObjectComm((PetscObject)coarse), PETSC_ERR_SUP, "DM %s does not implement DMInterpolateSolution()", ((PetscObject)coarse)->type_name);
24913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24921f3379b2SToby Isaac }
24931f3379b2SToby Isaac 
24941f3379b2SToby Isaac /*@
2495bb7acecfSBarry Smith   DMGetRefineLevel - Gets the number of refinements that have generated this `DM` from some initial `DM`.
2496eb3f98d2SBarry Smith 
2497eb3f98d2SBarry Smith   Not Collective
2498eb3f98d2SBarry Smith 
2499eb3f98d2SBarry Smith   Input Parameter:
2500bb7acecfSBarry Smith . dm - the `DM` object
2501eb3f98d2SBarry Smith 
2502eb3f98d2SBarry Smith   Output Parameter:
2503eb3f98d2SBarry Smith . level - number of refinements
2504eb3f98d2SBarry Smith 
2505eb3f98d2SBarry Smith   Level: developer
2506eb3f98d2SBarry Smith 
2507bb7acecfSBarry Smith   Note:
2508bb7acecfSBarry Smith   This can be used, by example, to set the number of coarser levels associated with this `DM` for a multigrid solver.
2509bb7acecfSBarry Smith 
25101cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
2511eb3f98d2SBarry Smith @*/
2512d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRefineLevel(DM dm, PetscInt *level)
2513d71ae5a4SJacob Faibussowitsch {
2514eb3f98d2SBarry Smith   PetscFunctionBegin;
2515eb3f98d2SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2516eb3f98d2SBarry Smith   *level = dm->levelup;
25173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2518eb3f98d2SBarry Smith }
2519eb3f98d2SBarry Smith 
2520fef3a512SBarry Smith /*@
2521bb7acecfSBarry Smith   DMSetRefineLevel - Sets the number of refinements that have generated this `DM`.
2522fef3a512SBarry Smith 
2523fef3a512SBarry Smith   Not Collective
2524fef3a512SBarry Smith 
2525d8d19677SJose E. Roman   Input Parameters:
2526bb7acecfSBarry Smith + dm    - the `DM` object
2527fef3a512SBarry Smith - level - number of refinements
2528fef3a512SBarry Smith 
2529fef3a512SBarry Smith   Level: advanced
2530fef3a512SBarry Smith 
253195452b02SPatrick Sanan   Notes:
2532bb7acecfSBarry Smith   This value is used by `PCMG` to determine how many multigrid levels to use
2533fef3a512SBarry Smith 
2534bb7acecfSBarry Smith   The values are usually set automatically by the process that is causing the refinements of an initial `DM` by calling this routine.
2535bb7acecfSBarry Smith 
25361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRefineLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
2537fef3a512SBarry Smith @*/
2538d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRefineLevel(DM dm, PetscInt level)
2539d71ae5a4SJacob Faibussowitsch {
2540fef3a512SBarry Smith   PetscFunctionBegin;
2541fef3a512SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2542fef3a512SBarry Smith   dm->levelup = level;
25433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2544fef3a512SBarry Smith }
2545fef3a512SBarry Smith 
2546d410b0cfSMatthew G. Knepley /*@
2547bb7acecfSBarry Smith   DMExtrude - Extrude a `DM` object from a surface
2548d410b0cfSMatthew G. Knepley 
254920f4b53cSBarry Smith   Collective
2550d410b0cfSMatthew G. Knepley 
2551f1a722f8SMatthew G. Knepley   Input Parameters:
2552bb7acecfSBarry Smith + dm     - the `DM` object
2553d410b0cfSMatthew G. Knepley - layers - the number of extruded cell layers
2554d410b0cfSMatthew G. Knepley 
2555d410b0cfSMatthew G. Knepley   Output Parameter:
255620f4b53cSBarry Smith . dme - the extruded `DM`, or `NULL`
2557d410b0cfSMatthew G. Knepley 
2558d410b0cfSMatthew G. Knepley   Level: developer
2559d410b0cfSMatthew G. Knepley 
256020f4b53cSBarry Smith   Note:
256120f4b53cSBarry Smith   If no extrusion was done, the return value is `NULL`
256220f4b53cSBarry Smith 
25631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`
2564d410b0cfSMatthew G. Knepley @*/
2565d71ae5a4SJacob Faibussowitsch PetscErrorCode DMExtrude(DM dm, PetscInt layers, DM *dme)
2566d71ae5a4SJacob Faibussowitsch {
2567d410b0cfSMatthew G. Knepley   PetscFunctionBegin;
2568d410b0cfSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2569dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, extrude, layers, dme);
2570d410b0cfSMatthew G. Knepley   if (*dme) {
2571d410b0cfSMatthew G. Knepley     (*dme)->ops->creatematrix = dm->ops->creatematrix;
25729566063dSJacob Faibussowitsch     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dme));
2573d410b0cfSMatthew G. Knepley     (*dme)->ctx = dm->ctx;
25749566063dSJacob Faibussowitsch     PetscCall(DMSetMatType(*dme, dm->mattype));
2575d410b0cfSMatthew G. Knepley   }
25763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2577d410b0cfSMatthew G. Knepley }
2578d410b0cfSMatthew G. Knepley 
2579d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformDM_Internal(DM dm, DM *tdm)
2580d71ae5a4SJacob Faibussowitsch {
2581ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2582ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
25834f572ea9SToby Isaac   PetscAssertPointer(tdm, 2);
2584ca3d3a14SMatthew G. Knepley   *tdm = dm->transformDM;
25853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2586ca3d3a14SMatthew G. Knepley }
2587ca3d3a14SMatthew G. Knepley 
2588d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformVec_Internal(DM dm, Vec *tv)
2589d71ae5a4SJacob Faibussowitsch {
2590ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2591ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
25924f572ea9SToby Isaac   PetscAssertPointer(tv, 2);
2593ca3d3a14SMatthew G. Knepley   *tv = dm->transform;
25943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2595ca3d3a14SMatthew G. Knepley }
2596ca3d3a14SMatthew G. Knepley 
2597ca3d3a14SMatthew G. Knepley /*@
2598bb7acecfSBarry Smith   DMHasBasisTransform - Whether the `DM` employs a basis transformation from functions in global vectors to functions in local vectors
2599ca3d3a14SMatthew G. Knepley 
2600ca3d3a14SMatthew G. Knepley   Input Parameter:
260120f4b53cSBarry Smith . dm - The `DM`
2602ca3d3a14SMatthew G. Knepley 
2603ca3d3a14SMatthew G. Knepley   Output Parameter:
260420f4b53cSBarry Smith . flg - `PETSC_TRUE` if a basis transformation should be done
2605ca3d3a14SMatthew G. Knepley 
2606ca3d3a14SMatthew G. Knepley   Level: developer
2607ca3d3a14SMatthew G. Knepley 
26081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`, `DMPlexCreateBasisRotation()`
2609ca3d3a14SMatthew G. Knepley @*/
2610d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasBasisTransform(DM dm, PetscBool *flg)
2611d71ae5a4SJacob Faibussowitsch {
2612ca3d3a14SMatthew G. Knepley   Vec tv;
2613ca3d3a14SMatthew G. Knepley 
2614ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2615ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
26164f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
26179566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
2618ca3d3a14SMatthew G. Knepley   *flg = tv ? PETSC_TRUE : PETSC_FALSE;
26193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2620ca3d3a14SMatthew G. Knepley }
2621ca3d3a14SMatthew G. Knepley 
2622d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConstructBasisTransform_Internal(DM dm)
2623d71ae5a4SJacob Faibussowitsch {
2624ca3d3a14SMatthew G. Knepley   PetscSection s, ts;
2625ca3d3a14SMatthew G. Knepley   PetscScalar *ta;
2626ca3d3a14SMatthew G. Knepley   PetscInt     cdim, pStart, pEnd, p, Nf, f, Nc, dof;
2627ca3d3a14SMatthew G. Knepley 
2628ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
26299566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
26309566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
26319566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
26329566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
26339566063dSJacob Faibussowitsch   PetscCall(DMClone(dm, &dm->transformDM));
26349566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm->transformDM, &ts));
26359566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetNumFields(ts, Nf));
26369566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(ts, pStart, pEnd));
2637ca3d3a14SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
26389566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetFieldComponents(s, f, &Nc));
2639ca3d3a14SMatthew G. Knepley     /* We could start to label fields by their transformation properties */
2640ca3d3a14SMatthew G. Knepley     if (Nc != cdim) continue;
2641ca3d3a14SMatthew G. Knepley     for (p = pStart; p < pEnd; ++p) {
26429566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(s, p, f, &dof));
2643ca3d3a14SMatthew G. Knepley       if (!dof) continue;
26449566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetFieldDof(ts, p, f, PetscSqr(cdim)));
26459566063dSJacob Faibussowitsch       PetscCall(PetscSectionAddDof(ts, p, PetscSqr(cdim)));
2646ca3d3a14SMatthew G. Knepley     }
2647ca3d3a14SMatthew G. Knepley   }
26489566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(ts));
26499566063dSJacob Faibussowitsch   PetscCall(DMCreateLocalVector(dm->transformDM, &dm->transform));
26509566063dSJacob Faibussowitsch   PetscCall(VecGetArray(dm->transform, &ta));
2651ca3d3a14SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
2652ca3d3a14SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
26539566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof));
2654ca3d3a14SMatthew G. Knepley       if (dof) {
2655ca3d3a14SMatthew G. Knepley         PetscReal          x[3] = {0.0, 0.0, 0.0};
2656ca3d3a14SMatthew G. Knepley         PetscScalar       *tva;
2657ca3d3a14SMatthew G. Knepley         const PetscScalar *A;
2658ca3d3a14SMatthew G. Knepley 
2659ca3d3a14SMatthew G. Knepley         /* TODO Get quadrature point for this dual basis vector for coordinate */
26609566063dSJacob Faibussowitsch         PetscCall((*dm->transformGetMatrix)(dm, x, PETSC_TRUE, &A, dm->transformCtx));
26619566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRef(dm->transformDM, p, f, ta, (void *)&tva));
26629566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(tva, A, PetscSqr(cdim)));
2663ca3d3a14SMatthew G. Knepley       }
2664ca3d3a14SMatthew G. Knepley     }
2665ca3d3a14SMatthew G. Knepley   }
26669566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(dm->transform, &ta));
26673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2668ca3d3a14SMatthew G. Knepley }
2669ca3d3a14SMatthew G. Knepley 
2670d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyTransform(DM dm, DM newdm)
2671d71ae5a4SJacob Faibussowitsch {
2672ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2673ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2674ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(newdm, DM_CLASSID, 2);
2675ca3d3a14SMatthew G. Knepley   newdm->transformCtx       = dm->transformCtx;
2676ca3d3a14SMatthew G. Knepley   newdm->transformSetUp     = dm->transformSetUp;
2677ca3d3a14SMatthew G. Knepley   newdm->transformDestroy   = NULL;
2678ca3d3a14SMatthew G. Knepley   newdm->transformGetMatrix = dm->transformGetMatrix;
26799566063dSJacob Faibussowitsch   if (newdm->transformSetUp) PetscCall(DMConstructBasisTransform_Internal(newdm));
26803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2681ca3d3a14SMatthew G. Knepley }
2682ca3d3a14SMatthew G. Knepley 
2683bb9467b5SJed Brown /*@C
2684bb7acecfSBarry Smith   DMGlobalToLocalHookAdd - adds a callback to be run when `DMGlobalToLocal()` is called
2685baf369e7SPeter Brune 
268620f4b53cSBarry Smith   Logically Collective
2687baf369e7SPeter Brune 
26884165533cSJose E. Roman   Input Parameters:
2689bb7acecfSBarry Smith + dm        - the `DM`
2690bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMGlobalToLocalBegin()`
2691bb7acecfSBarry Smith . endhook   - function to run after `DMGlobalToLocalEnd()` has completed
269220f4b53cSBarry Smith - ctx       - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2693baf369e7SPeter Brune 
269420f4b53cSBarry Smith   Calling sequence of `beginhook`:
2695a4e35b19SJacob Faibussowitsch + dm   - global `DM`
2696baf369e7SPeter Brune . g    - global vector
2697baf369e7SPeter Brune . mode - mode
2698baf369e7SPeter Brune . l    - local vector
2699baf369e7SPeter Brune - ctx  - optional user-defined function context
2700baf369e7SPeter Brune 
270120f4b53cSBarry Smith   Calling sequence of `endhook`:
2702a4e35b19SJacob Faibussowitsch + dm   - global `DM`
2703a4e35b19SJacob Faibussowitsch . g    - global vector
2704a4e35b19SJacob Faibussowitsch . mode - mode
2705a4e35b19SJacob Faibussowitsch . l    - local vector
2706baf369e7SPeter Brune - ctx  - optional user-defined function context
2707baf369e7SPeter Brune 
2708baf369e7SPeter Brune   Level: advanced
2709baf369e7SPeter Brune 
2710bb7acecfSBarry Smith   Note:
2711bb7acecfSBarry Smith   The hook may be used to provide, for example, values that represent boundary conditions in the local vectors that do not exist on the global vector.
2712bb7acecfSBarry Smith 
27131cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocal()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2714baf369e7SPeter Brune @*/
2715a4e35b19SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), PetscErrorCode (*endhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), void *ctx)
2716d71ae5a4SJacob Faibussowitsch {
2717baf369e7SPeter Brune   DMGlobalToLocalHookLink link, *p;
2718baf369e7SPeter Brune 
2719baf369e7SPeter Brune   PetscFunctionBegin;
2720baf369e7SPeter Brune   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2721baf369e7SPeter Brune   for (p = &dm->gtolhook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */
27229566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
2723baf369e7SPeter Brune   link->beginhook = beginhook;
2724baf369e7SPeter Brune   link->endhook   = endhook;
2725baf369e7SPeter Brune   link->ctx       = ctx;
27260298fd71SBarry Smith   link->next      = NULL;
2727baf369e7SPeter Brune   *p              = link;
27283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2729baf369e7SPeter Brune }
2730baf369e7SPeter Brune 
2731d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGlobalToLocalHook_Constraints(DM dm, Vec g, InsertMode mode, Vec l, void *ctx)
2732d71ae5a4SJacob Faibussowitsch {
27334c274da1SToby Isaac   Mat          cMat;
273479769bd5SJed Brown   Vec          cVec, cBias;
27354c274da1SToby Isaac   PetscSection section, cSec;
27364c274da1SToby Isaac   PetscInt     pStart, pEnd, p, dof;
27374c274da1SToby Isaac 
27384c274da1SToby Isaac   PetscFunctionBegin;
2739a4e35b19SJacob Faibussowitsch   (void)g;
2740a4e35b19SJacob Faibussowitsch   (void)ctx;
27414c274da1SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
27429566063dSJacob Faibussowitsch   PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, &cBias));
27434c274da1SToby Isaac   if (cMat && (mode == INSERT_VALUES || mode == INSERT_ALL_VALUES || mode == INSERT_BC_VALUES)) {
27445db9a05bSToby Isaac     PetscInt nRows;
27455db9a05bSToby Isaac 
27469566063dSJacob Faibussowitsch     PetscCall(MatGetSize(cMat, &nRows, NULL));
27473ba16761SJacob Faibussowitsch     if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS);
27489566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
27499566063dSJacob Faibussowitsch     PetscCall(MatCreateVecs(cMat, NULL, &cVec));
27509566063dSJacob Faibussowitsch     PetscCall(MatMult(cMat, l, cVec));
27519566063dSJacob Faibussowitsch     if (cBias) PetscCall(VecAXPY(cVec, 1., cBias));
27529566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd));
27534c274da1SToby Isaac     for (p = pStart; p < pEnd; p++) {
27549566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(cSec, p, &dof));
27554c274da1SToby Isaac       if (dof) {
27564c274da1SToby Isaac         PetscScalar *vals;
27579566063dSJacob Faibussowitsch         PetscCall(VecGetValuesSection(cVec, cSec, p, &vals));
27589566063dSJacob Faibussowitsch         PetscCall(VecSetValuesSection(l, section, p, vals, INSERT_ALL_VALUES));
27594c274da1SToby Isaac       }
27604c274da1SToby Isaac     }
27619566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&cVec));
27624c274da1SToby Isaac   }
27633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27644c274da1SToby Isaac }
27654c274da1SToby Isaac 
276647c6ae99SBarry Smith /*@
276701729b5cSPatrick Sanan   DMGlobalToLocal - update local vectors from global vector
276801729b5cSPatrick Sanan 
276920f4b53cSBarry Smith   Neighbor-wise Collective
277001729b5cSPatrick Sanan 
277101729b5cSPatrick Sanan   Input Parameters:
2772bb7acecfSBarry Smith + dm   - the `DM` object
277301729b5cSPatrick Sanan . g    - the global vector
2774bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES`
277501729b5cSPatrick Sanan - l    - the local vector
277601729b5cSPatrick Sanan 
277720f4b53cSBarry Smith   Level: beginner
277820f4b53cSBarry Smith 
277901729b5cSPatrick Sanan   Notes:
2780bb7acecfSBarry Smith   The communication involved in this update can be overlapped with computation by instead using
2781bb7acecfSBarry Smith   `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()`.
2782bb7acecfSBarry Smith 
2783bb7acecfSBarry Smith   `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process.
278401729b5cSPatrick Sanan 
27851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocalHookAdd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`,
278660225df5SJacob Faibussowitsch           `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`,
2787bb7acecfSBarry Smith           `DMGlobalToLocalBegin()` `DMGlobalToLocalEnd()`
278801729b5cSPatrick Sanan @*/
2789d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocal(DM dm, Vec g, InsertMode mode, Vec l)
2790d71ae5a4SJacob Faibussowitsch {
279101729b5cSPatrick Sanan   PetscFunctionBegin;
27929566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, g, mode, l));
27939566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, g, mode, l));
27943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
279501729b5cSPatrick Sanan }
279601729b5cSPatrick Sanan 
279701729b5cSPatrick Sanan /*@
279847c6ae99SBarry Smith   DMGlobalToLocalBegin - Begins updating local vectors from global vector
279947c6ae99SBarry Smith 
280020f4b53cSBarry Smith   Neighbor-wise Collective
280147c6ae99SBarry Smith 
280247c6ae99SBarry Smith   Input Parameters:
2803bb7acecfSBarry Smith + dm   - the `DM` object
280447c6ae99SBarry Smith . g    - the global vector
2805bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES`
280647c6ae99SBarry Smith - l    - the local vector
280747c6ae99SBarry Smith 
280801729b5cSPatrick Sanan   Level: intermediate
280947c6ae99SBarry Smith 
2810bb7acecfSBarry Smith   Notes:
2811bb7acecfSBarry Smith   The operation is completed with `DMGlobalToLocalEnd()`
2812bb7acecfSBarry Smith 
2813bb7acecfSBarry Smith   One can perform local computations between the `DMGlobalToLocalBegin()` and  `DMGlobalToLocalEnd()` to overlap communication and computation
2814bb7acecfSBarry Smith 
2815bb7acecfSBarry Smith   `DMGlobalToLocal()` is a short form of  `DMGlobalToLocalBegin()` and  `DMGlobalToLocalEnd()`
2816bb7acecfSBarry Smith 
2817bb7acecfSBarry Smith   `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process.
2818bb7acecfSBarry Smith 
281960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`
282047c6ae99SBarry Smith @*/
2821d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l)
2822d71ae5a4SJacob Faibussowitsch {
28237128ae9fSMatthew G Knepley   PetscSF                 sf;
2824baf369e7SPeter Brune   DMGlobalToLocalHookLink link;
282547c6ae99SBarry Smith 
282647c6ae99SBarry Smith   PetscFunctionBegin;
2827171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2828baf369e7SPeter Brune   for (link = dm->gtolhook; link; link = link->next) {
28291baa6e33SBarry Smith     if (link->beginhook) PetscCall((*link->beginhook)(dm, g, mode, l, link->ctx));
2830baf369e7SPeter Brune   }
28319566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
28327128ae9fSMatthew G Knepley   if (sf) {
2833ae5cfb4aSMatthew G. Knepley     const PetscScalar *gArray;
2834ae5cfb4aSMatthew G. Knepley     PetscScalar       *lArray;
2835d0295fc0SJunchao Zhang     PetscMemType       lmtype, gmtype;
28367128ae9fSMatthew G Knepley 
28377a8be351SBarry Smith     PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode);
28389566063dSJacob Faibussowitsch     PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype));
28399566063dSJacob Faibussowitsch     PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype));
28409566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastWithMemTypeBegin(sf, MPIU_SCALAR, gmtype, gArray, lmtype, lArray, MPI_REPLACE));
28419566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayAndMemType(l, &lArray));
28429566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayReadAndMemType(g, &gArray));
28437128ae9fSMatthew G Knepley   } else {
2844fa1e479aSStefano Zampini     PetscUseTypeMethod(dm, globaltolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
28457128ae9fSMatthew G Knepley   }
28463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
284747c6ae99SBarry Smith }
284847c6ae99SBarry Smith 
284947c6ae99SBarry Smith /*@
285047c6ae99SBarry Smith   DMGlobalToLocalEnd - Ends updating local vectors from global vector
285147c6ae99SBarry Smith 
285220f4b53cSBarry Smith   Neighbor-wise Collective
285347c6ae99SBarry Smith 
285447c6ae99SBarry Smith   Input Parameters:
2855bb7acecfSBarry Smith + dm   - the `DM` object
285647c6ae99SBarry Smith . g    - the global vector
2857bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES`
285847c6ae99SBarry Smith - l    - the local vector
285947c6ae99SBarry Smith 
286001729b5cSPatrick Sanan   Level: intermediate
286147c6ae99SBarry Smith 
2862bb7acecfSBarry Smith   Note:
2863bb7acecfSBarry Smith   See `DMGlobalToLocalBegin()` for details.
2864bb7acecfSBarry Smith 
286560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`
286647c6ae99SBarry Smith @*/
2867d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l)
2868d71ae5a4SJacob Faibussowitsch {
28697128ae9fSMatthew G Knepley   PetscSF                 sf;
2870ae5cfb4aSMatthew G. Knepley   const PetscScalar      *gArray;
2871ae5cfb4aSMatthew G. Knepley   PetscScalar            *lArray;
2872ca3d3a14SMatthew G. Knepley   PetscBool               transform;
2873baf369e7SPeter Brune   DMGlobalToLocalHookLink link;
2874d0295fc0SJunchao Zhang   PetscMemType            lmtype, gmtype;
287547c6ae99SBarry Smith 
287647c6ae99SBarry Smith   PetscFunctionBegin;
2877171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
28789566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
28799566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
28807128ae9fSMatthew G Knepley   if (sf) {
28817a8be351SBarry Smith     PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode);
28827128ae9fSMatthew G Knepley 
28839566063dSJacob Faibussowitsch     PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype));
28849566063dSJacob Faibussowitsch     PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype));
28859566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, gArray, lArray, MPI_REPLACE));
28869566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayAndMemType(l, &lArray));
28879566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayReadAndMemType(g, &gArray));
28889566063dSJacob Faibussowitsch     if (transform) PetscCall(DMPlexGlobalToLocalBasis(dm, l));
28897128ae9fSMatthew G Knepley   } else {
2890fa1e479aSStefano Zampini     PetscUseTypeMethod(dm, globaltolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
28917128ae9fSMatthew G Knepley   }
28929566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalHook_Constraints(dm, g, mode, l, NULL));
2893baf369e7SPeter Brune   for (link = dm->gtolhook; link; link = link->next) {
28949566063dSJacob Faibussowitsch     if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx));
2895baf369e7SPeter Brune   }
28963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
289747c6ae99SBarry Smith }
289847c6ae99SBarry Smith 
2899d4d07f1eSToby Isaac /*@C
2900d4d07f1eSToby Isaac   DMLocalToGlobalHookAdd - adds a callback to be run when a local to global is called
2901d4d07f1eSToby Isaac 
290220f4b53cSBarry Smith   Logically Collective
2903d4d07f1eSToby Isaac 
29044165533cSJose E. Roman   Input Parameters:
2905bb7acecfSBarry Smith + dm        - the `DM`
2906bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMLocalToGlobalBegin()`
2907bb7acecfSBarry Smith . endhook   - function to run after `DMLocalToGlobalEnd()` has completed
290820f4b53cSBarry Smith - ctx       - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2909d4d07f1eSToby Isaac 
291020f4b53cSBarry Smith   Calling sequence of `beginhook`:
2911a4e35b19SJacob Faibussowitsch + global - global `DM`
2912d4d07f1eSToby Isaac . l      - local vector
2913d4d07f1eSToby Isaac . mode   - mode
2914d4d07f1eSToby Isaac . g      - global vector
2915d4d07f1eSToby Isaac - ctx    - optional user-defined function context
2916d4d07f1eSToby Isaac 
291720f4b53cSBarry Smith   Calling sequence of `endhook`:
2918bb7acecfSBarry Smith + global - global `DM`
2919d4d07f1eSToby Isaac . l      - local vector
2920d4d07f1eSToby Isaac . mode   - mode
2921d4d07f1eSToby Isaac . g      - global vector
2922d4d07f1eSToby Isaac - ctx    - optional user-defined function context
2923d4d07f1eSToby Isaac 
2924d4d07f1eSToby Isaac   Level: advanced
2925d4d07f1eSToby Isaac 
29261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMRefineHookAdd()`, `DMGlobalToLocalHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2927d4d07f1eSToby Isaac @*/
2928a4e35b19SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), PetscErrorCode (*endhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), void *ctx)
2929d71ae5a4SJacob Faibussowitsch {
2930d4d07f1eSToby Isaac   DMLocalToGlobalHookLink link, *p;
2931d4d07f1eSToby Isaac 
2932d4d07f1eSToby Isaac   PetscFunctionBegin;
2933d4d07f1eSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2934d4d07f1eSToby Isaac   for (p = &dm->ltoghook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */
29359566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
2936d4d07f1eSToby Isaac   link->beginhook = beginhook;
2937d4d07f1eSToby Isaac   link->endhook   = endhook;
2938d4d07f1eSToby Isaac   link->ctx       = ctx;
2939d4d07f1eSToby Isaac   link->next      = NULL;
2940d4d07f1eSToby Isaac   *p              = link;
29413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2942d4d07f1eSToby Isaac }
2943d4d07f1eSToby Isaac 
2944d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMLocalToGlobalHook_Constraints(DM dm, Vec l, InsertMode mode, Vec g, void *ctx)
2945d71ae5a4SJacob Faibussowitsch {
29464c274da1SToby Isaac   PetscFunctionBegin;
2947a4e35b19SJacob Faibussowitsch   (void)g;
2948a4e35b19SJacob Faibussowitsch   (void)ctx;
29494c274da1SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
29502b6b7d09SToby Isaac   if (mode == ADD_VALUES || mode == ADD_ALL_VALUES || mode == ADD_BC_VALUES) {
29512b6b7d09SToby Isaac     Mat          cMat;
29522b6b7d09SToby Isaac     Vec          cVec;
29535db9a05bSToby Isaac     PetscInt     nRows;
29542b6b7d09SToby Isaac     PetscSection section, cSec;
29552b6b7d09SToby Isaac     PetscInt     pStart, pEnd, p, dof;
29562b6b7d09SToby Isaac 
29572b6b7d09SToby Isaac     PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, NULL));
29582b6b7d09SToby Isaac     if (!cMat) PetscFunctionReturn(PETSC_SUCCESS);
29595db9a05bSToby Isaac 
29609566063dSJacob Faibussowitsch     PetscCall(MatGetSize(cMat, &nRows, NULL));
29613ba16761SJacob Faibussowitsch     if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS);
29629566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
29639566063dSJacob Faibussowitsch     PetscCall(MatCreateVecs(cMat, NULL, &cVec));
29649566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd));
29654c274da1SToby Isaac     for (p = pStart; p < pEnd; p++) {
29669566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(cSec, p, &dof));
29674c274da1SToby Isaac       if (dof) {
29684c274da1SToby Isaac         PetscInt     d;
29694c274da1SToby Isaac         PetscScalar *vals;
29709566063dSJacob Faibussowitsch         PetscCall(VecGetValuesSection(l, section, p, &vals));
29719566063dSJacob Faibussowitsch         PetscCall(VecSetValuesSection(cVec, cSec, p, vals, mode));
29724c274da1SToby Isaac         /* for this to be the true transpose, we have to zero the values that
29734c274da1SToby Isaac          * we just extracted */
2974ad540459SPierre Jolivet         for (d = 0; d < dof; d++) vals[d] = 0.;
29754c274da1SToby Isaac       }
29764c274da1SToby Isaac     }
29779566063dSJacob Faibussowitsch     PetscCall(MatMultTransposeAdd(cMat, cVec, l, l));
29789566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&cVec));
29794c274da1SToby Isaac   }
29803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
29814c274da1SToby Isaac }
298201729b5cSPatrick Sanan /*@
298301729b5cSPatrick Sanan   DMLocalToGlobal - updates global vectors from local vectors
298401729b5cSPatrick Sanan 
298520f4b53cSBarry Smith   Neighbor-wise Collective
298601729b5cSPatrick Sanan 
298701729b5cSPatrick Sanan   Input Parameters:
2988bb7acecfSBarry Smith + dm   - the `DM` object
298901729b5cSPatrick Sanan . l    - the local vector
2990bb7acecfSBarry Smith . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point.
299101729b5cSPatrick Sanan - g    - the global vector
299201729b5cSPatrick Sanan 
299320f4b53cSBarry Smith   Level: beginner
299420f4b53cSBarry Smith 
299501729b5cSPatrick Sanan   Notes:
299601729b5cSPatrick Sanan   The communication involved in this update can be overlapped with computation by using
2997bb7acecfSBarry Smith   `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()`.
299801729b5cSPatrick Sanan 
2999bb7acecfSBarry Smith   In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation.
3000bb7acecfSBarry Smith 
3001bb7acecfSBarry Smith   `INSERT_VALUES` is not supported for `DMDA`; in that case simply compute the values directly into a global vector instead of a local one.
3002bb7acecfSBarry Smith 
3003bb7acecfSBarry Smith   Use `DMLocalToGlobalHookAdd()` to add additional operations that are performed on the data during the update process
300401729b5cSPatrick Sanan 
30051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`, `DMLocalToGlobalHookAdd()`, `DMGlobaToLocallHookAdd()`
300601729b5cSPatrick Sanan @*/
3007d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobal(DM dm, Vec l, InsertMode mode, Vec g)
3008d71ae5a4SJacob Faibussowitsch {
300901729b5cSPatrick Sanan   PetscFunctionBegin;
30109566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalBegin(dm, l, mode, g));
30119566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalEnd(dm, l, mode, g));
30123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
301301729b5cSPatrick Sanan }
30144c274da1SToby Isaac 
301547c6ae99SBarry Smith /*@
301601729b5cSPatrick Sanan   DMLocalToGlobalBegin - begins updating global vectors from local vectors
30179a42bb27SBarry Smith 
301820f4b53cSBarry Smith   Neighbor-wise Collective
30199a42bb27SBarry Smith 
30209a42bb27SBarry Smith   Input Parameters:
3021bb7acecfSBarry Smith + dm   - the `DM` object
3022f6813fd5SJed Brown . l    - the local vector
3023aa624791SPierre Jolivet . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point.
30241eb28f2eSBarry Smith - g    - the global vector
30259a42bb27SBarry Smith 
302620f4b53cSBarry Smith   Level: intermediate
302720f4b53cSBarry Smith 
302895452b02SPatrick Sanan   Notes:
3029bb7acecfSBarry Smith   In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation.
3030bb7acecfSBarry Smith 
3031bb7acecfSBarry Smith   `INSERT_VALUES is` not supported for `DMDA`, in that case simply compute the values directly into a global vector instead of a local one.
3032bb7acecfSBarry Smith 
3033bb7acecfSBarry Smith   Use `DMLocalToGlobalEnd()` to complete the communication process.
3034bb7acecfSBarry Smith 
3035bb7acecfSBarry Smith   `DMLocalToGlobal()` is a short form of  `DMLocalToGlobalBegin()` and  `DMLocalToGlobalEnd()`
3036bb7acecfSBarry Smith 
3037bb7acecfSBarry Smith   `DMLocalToGlobalHookAdd()` may be used to provide additional operations that are performed during the update process.
30389a42bb27SBarry Smith 
30391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`
30409a42bb27SBarry Smith @*/
3041d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalBegin(DM dm, Vec l, InsertMode mode, Vec g)
3042d71ae5a4SJacob Faibussowitsch {
30437128ae9fSMatthew G Knepley   PetscSF                 sf;
304484330215SMatthew G. Knepley   PetscSection            s, gs;
3045d4d07f1eSToby Isaac   DMLocalToGlobalHookLink link;
3046ca3d3a14SMatthew G. Knepley   Vec                     tmpl;
3047ae5cfb4aSMatthew G. Knepley   const PetscScalar      *lArray;
3048ae5cfb4aSMatthew G. Knepley   PetscScalar            *gArray;
3049fa88e482SJed Brown   PetscBool               isInsert, transform, l_inplace = PETSC_FALSE, g_inplace = PETSC_FALSE;
3050d0295fc0SJunchao Zhang   PetscMemType            lmtype = PETSC_MEMTYPE_HOST, gmtype = PETSC_MEMTYPE_HOST;
30519a42bb27SBarry Smith 
30529a42bb27SBarry Smith   PetscFunctionBegin;
3053171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3054d4d07f1eSToby Isaac   for (link = dm->ltoghook; link; link = link->next) {
30551baa6e33SBarry Smith     if (link->beginhook) PetscCall((*link->beginhook)(dm, l, mode, g, link->ctx));
3056d4d07f1eSToby Isaac   }
30579566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalHook_Constraints(dm, l, mode, g, NULL));
30589566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
30599566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
30607128ae9fSMatthew G Knepley   switch (mode) {
30617128ae9fSMatthew G Knepley   case INSERT_VALUES:
30627128ae9fSMatthew G Knepley   case INSERT_ALL_VALUES:
3063d71ae5a4SJacob Faibussowitsch   case INSERT_BC_VALUES:
3064d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_TRUE;
3065d71ae5a4SJacob Faibussowitsch     break;
30667128ae9fSMatthew G Knepley   case ADD_VALUES:
30677128ae9fSMatthew G Knepley   case ADD_ALL_VALUES:
3068d71ae5a4SJacob Faibussowitsch   case ADD_BC_VALUES:
3069d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_FALSE;
3070d71ae5a4SJacob Faibussowitsch     break;
3071d71ae5a4SJacob Faibussowitsch   default:
3072d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode);
30737128ae9fSMatthew G Knepley   }
3074ca3d3a14SMatthew G. Knepley   if ((sf && !isInsert) || (s && isInsert)) {
30759566063dSJacob Faibussowitsch     PetscCall(DMHasBasisTransform(dm, &transform));
3076ca3d3a14SMatthew G. Knepley     if (transform) {
30779566063dSJacob Faibussowitsch       PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
30789566063dSJacob Faibussowitsch       PetscCall(VecCopy(l, tmpl));
30799566063dSJacob Faibussowitsch       PetscCall(DMPlexLocalToGlobalBasis(dm, tmpl));
30809566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(tmpl, &lArray));
3081fa88e482SJed Brown     } else if (isInsert) {
30829566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(l, &lArray));
3083fa88e482SJed Brown     } else {
30849566063dSJacob Faibussowitsch       PetscCall(VecGetArrayReadAndMemType(l, &lArray, &lmtype));
3085fa88e482SJed Brown       l_inplace = PETSC_TRUE;
3086ca3d3a14SMatthew G. Knepley     }
3087fa88e482SJed Brown     if (s && isInsert) {
30889566063dSJacob Faibussowitsch       PetscCall(VecGetArray(g, &gArray));
3089fa88e482SJed Brown     } else {
30909566063dSJacob Faibussowitsch       PetscCall(VecGetArrayAndMemType(g, &gArray, &gmtype));
3091fa88e482SJed Brown       g_inplace = PETSC_TRUE;
3092fa88e482SJed Brown     }
3093ca3d3a14SMatthew G. Knepley     if (sf && !isInsert) {
30949566063dSJacob Faibussowitsch       PetscCall(PetscSFReduceWithMemTypeBegin(sf, MPIU_SCALAR, lmtype, lArray, gmtype, gArray, MPIU_SUM));
309584330215SMatthew G. Knepley     } else if (s && isInsert) {
309684330215SMatthew G. Knepley       PetscInt gStart, pStart, pEnd, p;
309784330215SMatthew G. Knepley 
30989566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalSection(dm, &gs));
30999566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
31009566063dSJacob Faibussowitsch       PetscCall(VecGetOwnershipRange(g, &gStart, NULL));
310184330215SMatthew G. Knepley       for (p = pStart; p < pEnd; ++p) {
3102b3b16f48SMatthew G. Knepley         PetscInt dof, gdof, cdof, gcdof, off, goff, d, e;
310384330215SMatthew G. Knepley 
31049566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(s, p, &dof));
31059566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(gs, p, &gdof));
31069566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintDof(s, p, &cdof));
31079566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintDof(gs, p, &gcdof));
31089566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(s, p, &off));
31099566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(gs, p, &goff));
3110b3b16f48SMatthew G. Knepley         /* Ignore off-process data and points with no global data */
311103442857SMatthew G. Knepley         if (!gdof || goff < 0) continue;
31127a8be351SBarry Smith         PetscCheck(dof == gdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof);
3113b3b16f48SMatthew G. Knepley         /* If no constraints are enforced in the global vector */
3114b3b16f48SMatthew G. Knepley         if (!gcdof) {
311584330215SMatthew G. Knepley           for (d = 0; d < dof; ++d) gArray[goff - gStart + d] = lArray[off + d];
3116b3b16f48SMatthew G. Knepley           /* If constraints are enforced in the global vector */
3117b3b16f48SMatthew G. Knepley         } else if (cdof == gcdof) {
311884330215SMatthew G. Knepley           const PetscInt *cdofs;
311984330215SMatthew G. Knepley           PetscInt        cind = 0;
312084330215SMatthew G. Knepley 
31219566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetConstraintIndices(s, p, &cdofs));
3122b3b16f48SMatthew G. Knepley           for (d = 0, e = 0; d < dof; ++d) {
31239371c9d4SSatish Balay             if ((cind < cdof) && (d == cdofs[cind])) {
31249371c9d4SSatish Balay               ++cind;
31259371c9d4SSatish Balay               continue;
31269371c9d4SSatish Balay             }
3127b3b16f48SMatthew G. Knepley             gArray[goff - gStart + e++] = lArray[off + d];
312884330215SMatthew G. Knepley           }
31297a8be351SBarry Smith         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof);
313084330215SMatthew G. Knepley       }
3131ca3d3a14SMatthew G. Knepley     }
3132fa88e482SJed Brown     if (g_inplace) {
31339566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayAndMemType(g, &gArray));
3134fa88e482SJed Brown     } else {
31359566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(g, &gArray));
3136fa88e482SJed Brown     }
3137ca3d3a14SMatthew G. Knepley     if (transform) {
31389566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(tmpl, &lArray));
31399566063dSJacob Faibussowitsch       PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
3140fa88e482SJed Brown     } else if (l_inplace) {
31419566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayReadAndMemType(l, &lArray));
3142ca3d3a14SMatthew G. Knepley     } else {
31439566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(l, &lArray));
3144ca3d3a14SMatthew G. Knepley     }
31457128ae9fSMatthew G Knepley   } else {
3146fa1e479aSStefano Zampini     PetscUseTypeMethod(dm, localtoglobalbegin, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g);
31477128ae9fSMatthew G Knepley   }
31483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31499a42bb27SBarry Smith }
31509a42bb27SBarry Smith 
31519a42bb27SBarry Smith /*@
31529a42bb27SBarry Smith   DMLocalToGlobalEnd - updates global vectors from local vectors
315347c6ae99SBarry Smith 
315420f4b53cSBarry Smith   Neighbor-wise Collective
315547c6ae99SBarry Smith 
315647c6ae99SBarry Smith   Input Parameters:
3157bb7acecfSBarry Smith + dm   - the `DM` object
3158f6813fd5SJed Brown . l    - the local vector
3159bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES`
3160f6813fd5SJed Brown - g    - the global vector
316147c6ae99SBarry Smith 
316201729b5cSPatrick Sanan   Level: intermediate
316347c6ae99SBarry Smith 
3164bb7acecfSBarry Smith   Note:
3165bb7acecfSBarry Smith   See `DMLocalToGlobalBegin()` for full details
3166bb7acecfSBarry Smith 
316760225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`
316847c6ae99SBarry Smith @*/
3169d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalEnd(DM dm, Vec l, InsertMode mode, Vec g)
3170d71ae5a4SJacob Faibussowitsch {
31717128ae9fSMatthew G Knepley   PetscSF                 sf;
317284330215SMatthew G. Knepley   PetscSection            s;
3173d4d07f1eSToby Isaac   DMLocalToGlobalHookLink link;
3174ca3d3a14SMatthew G. Knepley   PetscBool               isInsert, transform;
317547c6ae99SBarry Smith 
317647c6ae99SBarry Smith   PetscFunctionBegin;
3177171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
31789566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
31799566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
31807128ae9fSMatthew G Knepley   switch (mode) {
31817128ae9fSMatthew G Knepley   case INSERT_VALUES:
3182d71ae5a4SJacob Faibussowitsch   case INSERT_ALL_VALUES:
3183d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_TRUE;
3184d71ae5a4SJacob Faibussowitsch     break;
31857128ae9fSMatthew G Knepley   case ADD_VALUES:
3186d71ae5a4SJacob Faibussowitsch   case ADD_ALL_VALUES:
3187d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_FALSE;
3188d71ae5a4SJacob Faibussowitsch     break;
3189d71ae5a4SJacob Faibussowitsch   default:
3190d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode);
31917128ae9fSMatthew G Knepley   }
319284330215SMatthew G. Knepley   if (sf && !isInsert) {
3193ae5cfb4aSMatthew G. Knepley     const PetscScalar *lArray;
3194ae5cfb4aSMatthew G. Knepley     PetscScalar       *gArray;
3195ca3d3a14SMatthew G. Knepley     Vec                tmpl;
319684330215SMatthew G. Knepley 
31979566063dSJacob Faibussowitsch     PetscCall(DMHasBasisTransform(dm, &transform));
3198ca3d3a14SMatthew G. Knepley     if (transform) {
31999566063dSJacob Faibussowitsch       PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
32009566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(tmpl, &lArray));
3201ca3d3a14SMatthew G. Knepley     } else {
32029566063dSJacob Faibussowitsch       PetscCall(VecGetArrayReadAndMemType(l, &lArray, NULL));
3203ca3d3a14SMatthew G. Knepley     }
32049566063dSJacob Faibussowitsch     PetscCall(VecGetArrayAndMemType(g, &gArray, NULL));
32059566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceEnd(sf, MPIU_SCALAR, lArray, gArray, MPIU_SUM));
3206ca3d3a14SMatthew G. Knepley     if (transform) {
32079566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(tmpl, &lArray));
32089566063dSJacob Faibussowitsch       PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
3209ca3d3a14SMatthew G. Knepley     } else {
32109566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayReadAndMemType(l, &lArray));
3211ca3d3a14SMatthew G. Knepley     }
32129566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayAndMemType(g, &gArray));
321384330215SMatthew G. Knepley   } else if (s && isInsert) {
32147128ae9fSMatthew G Knepley   } else {
3215fa1e479aSStefano Zampini     PetscUseTypeMethod(dm, localtoglobalend, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g);
32167128ae9fSMatthew G Knepley   }
3217d4d07f1eSToby Isaac   for (link = dm->ltoghook; link; link = link->next) {
32189566063dSJacob Faibussowitsch     if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx));
3219d4d07f1eSToby Isaac   }
32203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
322147c6ae99SBarry Smith }
322247c6ae99SBarry Smith 
3223f089877aSRichard Tran Mills /*@
3224a4e35b19SJacob Faibussowitsch   DMLocalToLocalBegin - Begins the process of mapping values from a local vector (that include
3225a4e35b19SJacob Faibussowitsch   ghost points that contain irrelevant values) to another local vector where the ghost points
3226a4e35b19SJacob Faibussowitsch   in the second are set correctly from values on other MPI ranks.
3227f089877aSRichard Tran Mills 
322820f4b53cSBarry Smith   Neighbor-wise Collective
3229f089877aSRichard Tran Mills 
3230f089877aSRichard Tran Mills   Input Parameters:
3231bb7acecfSBarry Smith + dm   - the `DM` object
3232bc0a1609SRichard Tran Mills . g    - the original local vector
3233bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES`
3234f089877aSRichard Tran Mills 
3235bc0a1609SRichard Tran Mills   Output Parameter:
3236bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values
3237f089877aSRichard Tran Mills 
3238f089877aSRichard Tran Mills   Level: intermediate
3239f089877aSRichard Tran Mills 
324073ff1848SBarry Smith   Note:
3241a4e35b19SJacob Faibussowitsch   Must be followed by `DMLocalToLocalEnd()`.
3242a4e35b19SJacob Faibussowitsch 
324360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`
3244f089877aSRichard Tran Mills @*/
3245d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l)
3246d71ae5a4SJacob Faibussowitsch {
3247f089877aSRichard Tran Mills   PetscFunctionBegin;
3248f089877aSRichard Tran Mills   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
32499f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(g, VEC_CLASSID, 2);
32509f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(l, VEC_CLASSID, 4);
32519f4ada15SMatthew G. Knepley   PetscUseTypeMethod(dm, localtolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
32523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3253f089877aSRichard Tran Mills }
3254f089877aSRichard Tran Mills 
3255f089877aSRichard Tran Mills /*@
3256bb7acecfSBarry Smith   DMLocalToLocalEnd - Maps from a local vector to another local vector where the ghost
3257bb7acecfSBarry Smith   points in the second are set correctly. Must be preceded by `DMLocalToLocalBegin()`.
3258f089877aSRichard Tran Mills 
325920f4b53cSBarry Smith   Neighbor-wise Collective
3260f089877aSRichard Tran Mills 
3261f089877aSRichard Tran Mills   Input Parameters:
326260225df5SJacob Faibussowitsch + dm   - the `DM` object
3263bc0a1609SRichard Tran Mills . g    - the original local vector
3264bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES`
3265f089877aSRichard Tran Mills 
3266bc0a1609SRichard Tran Mills   Output Parameter:
3267bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values
3268f089877aSRichard Tran Mills 
3269f089877aSRichard Tran Mills   Level: intermediate
3270f089877aSRichard Tran Mills 
327160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`
3272f089877aSRichard Tran Mills @*/
3273d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l)
3274d71ae5a4SJacob Faibussowitsch {
3275f089877aSRichard Tran Mills   PetscFunctionBegin;
3276f089877aSRichard Tran Mills   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
32779f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(g, VEC_CLASSID, 2);
32789f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(l, VEC_CLASSID, 4);
32799f4ada15SMatthew G. Knepley   PetscUseTypeMethod(dm, localtolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
32803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3281f089877aSRichard Tran Mills }
3282f089877aSRichard Tran Mills 
328347c6ae99SBarry Smith /*@
3284bb7acecfSBarry Smith   DMCoarsen - Coarsens a `DM` object using a standard, non-adaptive coarsening of the underlying mesh
328547c6ae99SBarry Smith 
328620f4b53cSBarry Smith   Collective
328747c6ae99SBarry Smith 
3288d8d19677SJose E. Roman   Input Parameters:
3289bb7acecfSBarry Smith + dm   - the `DM` object
329020f4b53cSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`)
329147c6ae99SBarry Smith 
329247c6ae99SBarry Smith   Output Parameter:
3293bb7acecfSBarry Smith . dmc - the coarsened `DM`
329447c6ae99SBarry Smith 
329547c6ae99SBarry Smith   Level: developer
329647c6ae99SBarry Smith 
329773ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`,
329873ff1848SBarry Smith           `DMCoarsenHookAdd()`, `DMCoarsenHookRemove()`
329947c6ae99SBarry Smith @*/
3300d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsen(DM dm, MPI_Comm comm, DM *dmc)
3301d71ae5a4SJacob Faibussowitsch {
3302b17ce1afSJed Brown   DMCoarsenHookLink link;
330347c6ae99SBarry Smith 
330447c6ae99SBarry Smith   PetscFunctionBegin;
3305171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
33069566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_Coarsen, dm, 0, 0, 0));
3307dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, coarsen, comm, dmc);
3308b9d85ea2SLisandro Dalcin   if (*dmc) {
3309a3574896SRichard Tran Mills     (*dmc)->bind_below = dm->bind_below; /* Propagate this from parent DM; otherwise -dm_bind_below will be useless for multigrid cases. */
33109566063dSJacob Faibussowitsch     PetscCall(DMSetCoarseDM(dm, *dmc));
331143842a1eSJed Brown     (*dmc)->ops->creatematrix = dm->ops->creatematrix;
33129566063dSJacob Faibussowitsch     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmc));
3313644e2e5bSBarry Smith     (*dmc)->ctx       = dm->ctx;
33140598a293SJed Brown     (*dmc)->levelup   = dm->levelup;
3315656b349aSBarry Smith     (*dmc)->leveldown = dm->leveldown + 1;
33169566063dSJacob Faibussowitsch     PetscCall(DMSetMatType(*dmc, dm->mattype));
3317b17ce1afSJed Brown     for (link = dm->coarsenhook; link; link = link->next) {
33189566063dSJacob Faibussowitsch       if (link->coarsenhook) PetscCall((*link->coarsenhook)(dm, *dmc, link->ctx));
3319b17ce1afSJed Brown     }
3320b9d85ea2SLisandro Dalcin   }
33219566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_Coarsen, dm, 0, 0, 0));
33227a8be351SBarry Smith   PetscCheck(*dmc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "NULL coarse mesh produced");
33233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3324b17ce1afSJed Brown }
3325b17ce1afSJed Brown 
3326bb9467b5SJed Brown /*@C
3327b17ce1afSJed Brown   DMCoarsenHookAdd - adds a callback to be run when restricting a nonlinear problem to the coarse grid
3328b17ce1afSJed Brown 
332920f4b53cSBarry Smith   Logically Collective; No Fortran Support
3330b17ce1afSJed Brown 
33314165533cSJose E. Roman   Input Parameters:
3332bb7acecfSBarry Smith + fine         - `DM` on which to run a hook when restricting to a coarser level
3333b17ce1afSJed Brown . coarsenhook  - function to run when setting up a coarser level
3334bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels (called once per `SNESSolve()`)
333520f4b53cSBarry Smith - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3336b17ce1afSJed Brown 
333720f4b53cSBarry Smith   Calling sequence of `coarsenhook`:
3338bb7acecfSBarry Smith + fine   - fine level `DM`
3339bb7acecfSBarry Smith . coarse - coarse level `DM` to restrict problem to
3340b17ce1afSJed Brown - ctx    - optional user-defined function context
3341b17ce1afSJed Brown 
334220f4b53cSBarry Smith   Calling sequence of `restricthook`:
3343bb7acecfSBarry Smith + fine      - fine level `DM`
3344bb7acecfSBarry Smith . mrestrict - matrix restricting a fine-level solution to the coarse grid, usually the transpose of the interpolation
3345c833c3b5SJed Brown . rscale    - scaling vector for restriction
3346c833c3b5SJed Brown . inject    - matrix restricting by injection
3347b17ce1afSJed Brown . coarse    - coarse level DM to update
3348b17ce1afSJed Brown - ctx       - optional user-defined function context
3349b17ce1afSJed Brown 
3350b17ce1afSJed Brown   Level: advanced
3351b17ce1afSJed Brown 
3352b17ce1afSJed Brown   Notes:
3353bb7acecfSBarry Smith   This function is only needed if auxiliary data, attached to the `DM` with `PetscObjectCompose()`, needs to be set up or passed from the fine `DM` to the coarse `DM`.
3354b17ce1afSJed Brown 
3355b17ce1afSJed Brown   If this function is called multiple times, the hooks will be run in the order they are added.
3356b17ce1afSJed Brown 
3357b17ce1afSJed Brown   In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to
3358bb7acecfSBarry Smith   extract the finest level information from its context (instead of from the `SNES`).
3359b17ce1afSJed Brown 
3360bb7acecfSBarry Smith   The hooks are automatically called by `DMRestrict()`
3361bb7acecfSBarry Smith 
33621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
3363b17ce1afSJed Brown @*/
3364a4e35b19SJacob Faibussowitsch PetscErrorCode DMCoarsenHookAdd(DM fine, PetscErrorCode (*coarsenhook)(DM fine, DM coarse, void *ctx), PetscErrorCode (*restricthook)(DM fine, Mat mrestrict, Vec rscale, Mat inject, DM coarse, void *ctx), void *ctx)
3365d71ae5a4SJacob Faibussowitsch {
3366b17ce1afSJed Brown   DMCoarsenHookLink link, *p;
3367b17ce1afSJed Brown 
3368b17ce1afSJed Brown   PetscFunctionBegin;
3369b17ce1afSJed Brown   PetscValidHeaderSpecific(fine, DM_CLASSID, 1);
33701e3d8eccSJed Brown   for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
33713ba16761SJacob Faibussowitsch     if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
33721e3d8eccSJed Brown   }
33739566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
3374b17ce1afSJed Brown   link->coarsenhook  = coarsenhook;
3375b17ce1afSJed Brown   link->restricthook = restricthook;
3376b17ce1afSJed Brown   link->ctx          = ctx;
33770298fd71SBarry Smith   link->next         = NULL;
3378b17ce1afSJed Brown   *p                 = link;
33793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3380b17ce1afSJed Brown }
3381b17ce1afSJed Brown 
3382dc822a44SJed Brown /*@C
3383bb7acecfSBarry Smith   DMCoarsenHookRemove - remove a callback set with `DMCoarsenHookAdd()`
3384dc822a44SJed Brown 
338520f4b53cSBarry Smith   Logically Collective; No Fortran Support
3386dc822a44SJed Brown 
33874165533cSJose E. Roman   Input Parameters:
3388bb7acecfSBarry Smith + fine         - `DM` on which to run a hook when restricting to a coarser level
3389dc822a44SJed Brown . coarsenhook  - function to run when setting up a coarser level
3390bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels
339120f4b53cSBarry Smith - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3392dc822a44SJed Brown 
3393dc822a44SJed Brown   Level: advanced
3394dc822a44SJed Brown 
339573ff1848SBarry Smith   Notes:
339673ff1848SBarry Smith   This function does nothing if the `coarsenhook` is not in the list.
339773ff1848SBarry Smith 
339873ff1848SBarry Smith   See `DMCoarsenHookAdd()` for the calling sequence of `coarsenhook` and `restricthook`
3399dc822a44SJed Brown 
34001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
3401dc822a44SJed Brown @*/
3402d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookRemove(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx)
3403d71ae5a4SJacob Faibussowitsch {
3404dc822a44SJed Brown   DMCoarsenHookLink link, *p;
3405dc822a44SJed Brown 
3406dc822a44SJed Brown   PetscFunctionBegin;
3407dc822a44SJed Brown   PetscValidHeaderSpecific(fine, DM_CLASSID, 1);
3408dc822a44SJed Brown   for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Search the list of current hooks */
3409dc822a44SJed Brown     if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) {
3410dc822a44SJed Brown       link = *p;
3411dc822a44SJed Brown       *p   = link->next;
34129566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
3413dc822a44SJed Brown       break;
3414dc822a44SJed Brown     }
3415dc822a44SJed Brown   }
34163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3417dc822a44SJed Brown }
3418dc822a44SJed Brown 
3419b17ce1afSJed Brown /*@
3420bb7acecfSBarry Smith   DMRestrict - restricts user-defined problem data to a coarser `DM` by running hooks registered by `DMCoarsenHookAdd()`
3421b17ce1afSJed Brown 
3422b17ce1afSJed Brown   Collective if any hooks are
3423b17ce1afSJed Brown 
34244165533cSJose E. Roman   Input Parameters:
3425bb7acecfSBarry Smith + fine    - finer `DM` from which the data is obtained
3426bb7acecfSBarry Smith . restrct - restriction matrix, apply using `MatRestrict()`, usually the transpose of the interpolation
3427e91eccc2SStefano Zampini . rscale  - scaling vector for restriction
3428bb7acecfSBarry Smith . inject  - injection matrix, also use `MatRestrict()`
342920f4b53cSBarry Smith - coarse  - coarser `DM` to update
3430b17ce1afSJed Brown 
3431b17ce1afSJed Brown   Level: developer
3432b17ce1afSJed Brown 
343373ff1848SBarry Smith   Developer Note:
3434bb7acecfSBarry Smith   Though this routine is called `DMRestrict()` the hooks are added with `DMCoarsenHookAdd()`, a consistent terminology would be better
3435bb7acecfSBarry Smith 
34361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMInterpolate()`, `DMRefineHookAdd()`
3437b17ce1afSJed Brown @*/
3438d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestrict(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse)
3439d71ae5a4SJacob Faibussowitsch {
3440b17ce1afSJed Brown   DMCoarsenHookLink link;
3441b17ce1afSJed Brown 
3442b17ce1afSJed Brown   PetscFunctionBegin;
3443b17ce1afSJed Brown   for (link = fine->coarsenhook; link; link = link->next) {
34441baa6e33SBarry Smith     if (link->restricthook) PetscCall((*link->restricthook)(fine, restrct, rscale, inject, coarse, link->ctx));
3445b17ce1afSJed Brown   }
34463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
344747c6ae99SBarry Smith }
344847c6ae99SBarry Smith 
3449bb9467b5SJed Brown /*@C
345073ff1848SBarry Smith   DMSubDomainHookAdd - adds a callback to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()`
34515dbd56e3SPeter Brune 
345220f4b53cSBarry Smith   Logically Collective; No Fortran Support
34535dbd56e3SPeter Brune 
34544165533cSJose E. Roman   Input Parameters:
3455bb7acecfSBarry Smith + global       - global `DM`
3456bb7acecfSBarry Smith . ddhook       - function to run to pass data to the decomposition `DM` upon its creation
34575dbd56e3SPeter Brune . restricthook - function to run to update data on block solve (at the beginning of the block solve)
345820f4b53cSBarry Smith - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
34595dbd56e3SPeter Brune 
346020f4b53cSBarry Smith   Calling sequence of `ddhook`:
3461bb7acecfSBarry Smith + global - global `DM`
346273ff1848SBarry Smith . block  - subdomain `DM`
3463ec4806b8SPeter Brune - ctx    - optional user-defined function context
3464ec4806b8SPeter Brune 
346520f4b53cSBarry Smith   Calling sequence of `restricthook`:
3466bb7acecfSBarry Smith + global - global `DM`
346773ff1848SBarry Smith . out    - scatter to the outer (with ghost and overlap points) sub vector
346873ff1848SBarry Smith . in     - scatter to sub vector values only owned locally
346973ff1848SBarry Smith . block  - subdomain `DM`
34705dbd56e3SPeter Brune - ctx    - optional user-defined function context
34715dbd56e3SPeter Brune 
34725dbd56e3SPeter Brune   Level: advanced
34735dbd56e3SPeter Brune 
34745dbd56e3SPeter Brune   Notes:
347573ff1848SBarry Smith   This function can be used if auxiliary data needs to be set up on subdomain `DM`s.
34765dbd56e3SPeter Brune 
34775dbd56e3SPeter Brune   If this function is called multiple times, the hooks will be run in the order they are added.
34785dbd56e3SPeter Brune 
34795dbd56e3SPeter Brune   In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to
3480bb7acecfSBarry Smith   extract the global information from its context (instead of from the `SNES`).
34815dbd56e3SPeter Brune 
348273ff1848SBarry Smith   Developer Note:
348373ff1848SBarry Smith   It is unclear what "block solve" means within the definition of `restricthook`
348473ff1848SBarry Smith 
348573ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`, `DMCreateDomainDecomposition()`
34865dbd56e3SPeter Brune @*/
3487a4e35b19SJacob Faibussowitsch PetscErrorCode DMSubDomainHookAdd(DM global, PetscErrorCode (*ddhook)(DM global, DM block, void *ctx), PetscErrorCode (*restricthook)(DM global, VecScatter out, VecScatter in, DM block, void *ctx), void *ctx)
3488d71ae5a4SJacob Faibussowitsch {
3489be081cd6SPeter Brune   DMSubDomainHookLink link, *p;
34905dbd56e3SPeter Brune 
34915dbd56e3SPeter Brune   PetscFunctionBegin;
34925dbd56e3SPeter Brune   PetscValidHeaderSpecific(global, DM_CLASSID, 1);
3493b3a6b972SJed Brown   for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
34943ba16761SJacob Faibussowitsch     if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
3495b3a6b972SJed Brown   }
34969566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
34975dbd56e3SPeter Brune   link->restricthook = restricthook;
3498be081cd6SPeter Brune   link->ddhook       = ddhook;
34995dbd56e3SPeter Brune   link->ctx          = ctx;
35000298fd71SBarry Smith   link->next         = NULL;
35015dbd56e3SPeter Brune   *p                 = link;
35023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35035dbd56e3SPeter Brune }
35045dbd56e3SPeter Brune 
3505b3a6b972SJed Brown /*@C
350673ff1848SBarry Smith   DMSubDomainHookRemove - remove a callback from the list to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()`
3507b3a6b972SJed Brown 
350820f4b53cSBarry Smith   Logically Collective; No Fortran Support
3509b3a6b972SJed Brown 
35104165533cSJose E. Roman   Input Parameters:
3511bb7acecfSBarry Smith + global       - global `DM`
3512bb7acecfSBarry Smith . ddhook       - function to run to pass data to the decomposition `DM` upon its creation
3513b3a6b972SJed Brown . restricthook - function to run to update data on block solve (at the beginning of the block solve)
351420f4b53cSBarry Smith - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3515b3a6b972SJed Brown 
3516b3a6b972SJed Brown   Level: advanced
3517b3a6b972SJed Brown 
351873ff1848SBarry Smith   Note:
351973ff1848SBarry Smith   See `DMSubDomainHookAdd()` for the calling sequences of `ddhook` and `restricthook`
352073ff1848SBarry Smith 
352173ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`,
352273ff1848SBarry Smith           `DMCreateDomainDecomposition()`
3523b3a6b972SJed Brown @*/
3524d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookRemove(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx)
3525d71ae5a4SJacob Faibussowitsch {
3526b3a6b972SJed Brown   DMSubDomainHookLink link, *p;
3527b3a6b972SJed Brown 
3528b3a6b972SJed Brown   PetscFunctionBegin;
3529b3a6b972SJed Brown   PetscValidHeaderSpecific(global, DM_CLASSID, 1);
3530b3a6b972SJed Brown   for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Search the list of current hooks */
3531b3a6b972SJed Brown     if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) {
3532b3a6b972SJed Brown       link = *p;
3533b3a6b972SJed Brown       *p   = link->next;
35349566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
3535b3a6b972SJed Brown       break;
3536b3a6b972SJed Brown     }
3537b3a6b972SJed Brown   }
35383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3539b3a6b972SJed Brown }
3540b3a6b972SJed Brown 
35415dbd56e3SPeter Brune /*@
354273ff1848SBarry Smith   DMSubDomainRestrict - restricts user-defined problem data to a subdomain `DM` by running hooks registered by `DMSubDomainHookAdd()`
35435dbd56e3SPeter Brune 
35445dbd56e3SPeter Brune   Collective if any hooks are
35455dbd56e3SPeter Brune 
35464165533cSJose E. Roman   Input Parameters:
3547a4e35b19SJacob Faibussowitsch + global   - The global `DM` to use as a base
3548a4e35b19SJacob Faibussowitsch . oscatter - The scatter from domain global vector filling subdomain global vector with overlap
3549a4e35b19SJacob Faibussowitsch . gscatter - The scatter from domain global vector filling subdomain local vector with ghosts
3550a4e35b19SJacob Faibussowitsch - subdm    - The subdomain `DM` to update
35515dbd56e3SPeter Brune 
35525dbd56e3SPeter Brune   Level: developer
35535dbd56e3SPeter Brune 
355473ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMCreateDomainDecomposition()`
35555dbd56e3SPeter Brune @*/
3556d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainRestrict(DM global, VecScatter oscatter, VecScatter gscatter, DM subdm)
3557d71ae5a4SJacob Faibussowitsch {
3558be081cd6SPeter Brune   DMSubDomainHookLink link;
35595dbd56e3SPeter Brune 
35605dbd56e3SPeter Brune   PetscFunctionBegin;
3561be081cd6SPeter Brune   for (link = global->subdomainhook; link; link = link->next) {
35621baa6e33SBarry Smith     if (link->restricthook) PetscCall((*link->restricthook)(global, oscatter, gscatter, subdm, link->ctx));
35635dbd56e3SPeter Brune   }
35643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35655dbd56e3SPeter Brune }
35665dbd56e3SPeter Brune 
35675fe1f584SPeter Brune /*@
3568bb7acecfSBarry Smith   DMGetCoarsenLevel - Gets the number of coarsenings that have generated this `DM`.
35695fe1f584SPeter Brune 
35705fe1f584SPeter Brune   Not Collective
35715fe1f584SPeter Brune 
35725fe1f584SPeter Brune   Input Parameter:
3573bb7acecfSBarry Smith . dm - the `DM` object
35745fe1f584SPeter Brune 
35755fe1f584SPeter Brune   Output Parameter:
35766a7d9d85SPeter Brune . level - number of coarsenings
35775fe1f584SPeter Brune 
35785fe1f584SPeter Brune   Level: developer
35795fe1f584SPeter Brune 
35801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMSetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
35815fe1f584SPeter Brune @*/
3582d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarsenLevel(DM dm, PetscInt *level)
3583d71ae5a4SJacob Faibussowitsch {
35845fe1f584SPeter Brune   PetscFunctionBegin;
35855fe1f584SPeter Brune   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
35864f572ea9SToby Isaac   PetscAssertPointer(level, 2);
35875fe1f584SPeter Brune   *level = dm->leveldown;
35883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35895fe1f584SPeter Brune }
35905fe1f584SPeter Brune 
35919a64c4a8SMatthew G. Knepley /*@
3592bb7acecfSBarry Smith   DMSetCoarsenLevel - Sets the number of coarsenings that have generated this `DM`.
35939a64c4a8SMatthew G. Knepley 
359420f4b53cSBarry Smith   Collective
35959a64c4a8SMatthew G. Knepley 
35969a64c4a8SMatthew G. Knepley   Input Parameters:
3597bb7acecfSBarry Smith + dm    - the `DM` object
35989a64c4a8SMatthew G. Knepley - level - number of coarsenings
35999a64c4a8SMatthew G. Knepley 
36009a64c4a8SMatthew G. Knepley   Level: developer
36019a64c4a8SMatthew G. Knepley 
3602bb7acecfSBarry Smith   Note:
3603bb7acecfSBarry Smith   This is rarely used directly, the information is automatically set when a `DM` is created with `DMCoarsen()`
3604bb7acecfSBarry Smith 
360542747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
36069a64c4a8SMatthew G. Knepley @*/
3607d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarsenLevel(DM dm, PetscInt level)
3608d71ae5a4SJacob Faibussowitsch {
36099a64c4a8SMatthew G. Knepley   PetscFunctionBegin;
36109a64c4a8SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36119a64c4a8SMatthew G. Knepley   dm->leveldown = level;
36123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
36139a64c4a8SMatthew G. Knepley }
36149a64c4a8SMatthew G. Knepley 
361547c6ae99SBarry Smith /*@C
3616bb7acecfSBarry Smith   DMRefineHierarchy - Refines a `DM` object, all levels at once
361747c6ae99SBarry Smith 
361820f4b53cSBarry Smith   Collective
361947c6ae99SBarry Smith 
3620d8d19677SJose E. Roman   Input Parameters:
3621bb7acecfSBarry Smith + dm      - the `DM` object
362247c6ae99SBarry Smith - nlevels - the number of levels of refinement
362347c6ae99SBarry Smith 
362447c6ae99SBarry Smith   Output Parameter:
3625bb7acecfSBarry Smith . dmf - the refined `DM` hierarchy
362647c6ae99SBarry Smith 
362747c6ae99SBarry Smith   Level: developer
362847c6ae99SBarry Smith 
36291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMCoarsenHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
363047c6ae99SBarry Smith @*/
3631d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHierarchy(DM dm, PetscInt nlevels, DM dmf[])
3632d71ae5a4SJacob Faibussowitsch {
363347c6ae99SBarry Smith   PetscFunctionBegin;
3634171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36357a8be351SBarry Smith   PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative");
36363ba16761SJacob Faibussowitsch   if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS);
36374f572ea9SToby Isaac   PetscAssertPointer(dmf, 3);
3638213acdd3SPierre Jolivet   if (dm->ops->refine && !dm->ops->refinehierarchy) {
363947c6ae99SBarry Smith     PetscInt i;
364047c6ae99SBarry Smith 
36419566063dSJacob Faibussowitsch     PetscCall(DMRefine(dm, PetscObjectComm((PetscObject)dm), &dmf[0]));
364248a46eb9SPierre Jolivet     for (i = 1; i < nlevels; i++) PetscCall(DMRefine(dmf[i - 1], PetscObjectComm((PetscObject)dm), &dmf[i]));
3643213acdd3SPierre Jolivet   } else PetscUseTypeMethod(dm, refinehierarchy, nlevels, dmf);
36443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
364547c6ae99SBarry Smith }
364647c6ae99SBarry Smith 
364747c6ae99SBarry Smith /*@C
3648bb7acecfSBarry Smith   DMCoarsenHierarchy - Coarsens a `DM` object, all levels at once
364947c6ae99SBarry Smith 
365020f4b53cSBarry Smith   Collective
365147c6ae99SBarry Smith 
3652d8d19677SJose E. Roman   Input Parameters:
3653bb7acecfSBarry Smith + dm      - the `DM` object
365447c6ae99SBarry Smith - nlevels - the number of levels of coarsening
365547c6ae99SBarry Smith 
365647c6ae99SBarry Smith   Output Parameter:
3657bb7acecfSBarry Smith . dmc - the coarsened `DM` hierarchy
365847c6ae99SBarry Smith 
365947c6ae99SBarry Smith   Level: developer
366047c6ae99SBarry Smith 
36611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMRefineHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
366247c6ae99SBarry Smith @*/
3663d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHierarchy(DM dm, PetscInt nlevels, DM dmc[])
3664d71ae5a4SJacob Faibussowitsch {
366547c6ae99SBarry Smith   PetscFunctionBegin;
3666171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36677a8be351SBarry Smith   PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative");
36683ba16761SJacob Faibussowitsch   if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS);
36694f572ea9SToby Isaac   PetscAssertPointer(dmc, 3);
3670213acdd3SPierre Jolivet   if (dm->ops->coarsen && !dm->ops->coarsenhierarchy) {
367147c6ae99SBarry Smith     PetscInt i;
367247c6ae99SBarry Smith 
36739566063dSJacob Faibussowitsch     PetscCall(DMCoarsen(dm, PetscObjectComm((PetscObject)dm), &dmc[0]));
367448a46eb9SPierre Jolivet     for (i = 1; i < nlevels; i++) PetscCall(DMCoarsen(dmc[i - 1], PetscObjectComm((PetscObject)dm), &dmc[i]));
3675213acdd3SPierre Jolivet   } else PetscUseTypeMethod(dm, coarsenhierarchy, nlevels, dmc);
36763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
367747c6ae99SBarry Smith }
367847c6ae99SBarry Smith 
36791a266240SBarry Smith /*@C
3680bb7acecfSBarry Smith   DMSetApplicationContextDestroy - Sets a user function that will be called to destroy the application context when the `DM` is destroyed
36811a266240SBarry Smith 
3682bb7acecfSBarry Smith   Logically Collective if the function is collective
36831a266240SBarry Smith 
36841a266240SBarry Smith   Input Parameters:
3685bb7acecfSBarry Smith + dm      - the `DM` object
36861a266240SBarry Smith - destroy - the destroy function
36871a266240SBarry Smith 
36881a266240SBarry Smith   Level: intermediate
36891a266240SBarry Smith 
36901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
3691f07f9ceaSJed Brown @*/
3692d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContextDestroy(DM dm, PetscErrorCode (*destroy)(void **))
3693d71ae5a4SJacob Faibussowitsch {
36941a266240SBarry Smith   PetscFunctionBegin;
3695171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36961a266240SBarry Smith   dm->ctxdestroy = destroy;
36973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
36981a266240SBarry Smith }
36991a266240SBarry Smith 
3700b07ff414SBarry Smith /*@
3701bb7acecfSBarry Smith   DMSetApplicationContext - Set a user context into a `DM` object
370247c6ae99SBarry Smith 
370347c6ae99SBarry Smith   Not Collective
370447c6ae99SBarry Smith 
370547c6ae99SBarry Smith   Input Parameters:
3706bb7acecfSBarry Smith + dm  - the `DM` object
370747c6ae99SBarry Smith - ctx - the user context
370847c6ae99SBarry Smith 
370947c6ae99SBarry Smith   Level: intermediate
371047c6ae99SBarry Smith 
3711bb7acecfSBarry Smith   Note:
371235cb6cd3SPierre Jolivet   A user context is a way to pass problem specific information that is accessible whenever the `DM` is available
3713bb7acecfSBarry Smith 
371460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
371547c6ae99SBarry Smith @*/
3716d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContext(DM dm, void *ctx)
3717d71ae5a4SJacob Faibussowitsch {
371847c6ae99SBarry Smith   PetscFunctionBegin;
3719171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
372047c6ae99SBarry Smith   dm->ctx = ctx;
37213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
372247c6ae99SBarry Smith }
372347c6ae99SBarry Smith 
372447c6ae99SBarry Smith /*@
3725bb7acecfSBarry Smith   DMGetApplicationContext - Gets a user context from a `DM` object
372647c6ae99SBarry Smith 
372747c6ae99SBarry Smith   Not Collective
372847c6ae99SBarry Smith 
372947c6ae99SBarry Smith   Input Parameter:
3730bb7acecfSBarry Smith . dm - the `DM` object
373147c6ae99SBarry Smith 
373247c6ae99SBarry Smith   Output Parameter:
373347c6ae99SBarry Smith . ctx - the user context
373447c6ae99SBarry Smith 
373547c6ae99SBarry Smith   Level: intermediate
373647c6ae99SBarry Smith 
3737bb7acecfSBarry Smith   Note:
373835cb6cd3SPierre Jolivet   A user context is a way to pass problem specific information that is accessible whenever the `DM` is available
3739bb7acecfSBarry Smith 
374042747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
374147c6ae99SBarry Smith @*/
3742d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetApplicationContext(DM dm, void *ctx)
3743d71ae5a4SJacob Faibussowitsch {
374447c6ae99SBarry Smith   PetscFunctionBegin;
3745171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
37461b2093e4SBarry Smith   *(void **)ctx = dm->ctx;
37473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
374847c6ae99SBarry Smith }
374947c6ae99SBarry Smith 
375008da532bSDmitry Karpeev /*@C
3751bb7acecfSBarry Smith   DMSetVariableBounds - sets a function to compute the lower and upper bound vectors for `SNESVI`.
375208da532bSDmitry Karpeev 
375320f4b53cSBarry Smith   Logically Collective
375408da532bSDmitry Karpeev 
3755d8d19677SJose E. Roman   Input Parameters:
375608da532bSDmitry Karpeev + dm - the DM object
375720f4b53cSBarry Smith - f  - the function that computes variable bounds used by SNESVI (use `NULL` to cancel a previous function that was set)
375808da532bSDmitry Karpeev 
375908da532bSDmitry Karpeev   Level: intermediate
376008da532bSDmitry Karpeev 
37611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`,
3762db781477SPatrick Sanan          `DMSetJacobian()`
376308da532bSDmitry Karpeev @*/
3764d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVariableBounds(DM dm, PetscErrorCode (*f)(DM, Vec, Vec))
3765d71ae5a4SJacob Faibussowitsch {
376608da532bSDmitry Karpeev   PetscFunctionBegin;
37675a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
376808da532bSDmitry Karpeev   dm->ops->computevariablebounds = f;
37693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
377008da532bSDmitry Karpeev }
377108da532bSDmitry Karpeev 
377208da532bSDmitry Karpeev /*@
3773bb7acecfSBarry Smith   DMHasVariableBounds - does the `DM` object have a variable bounds function?
377408da532bSDmitry Karpeev 
377508da532bSDmitry Karpeev   Not Collective
377608da532bSDmitry Karpeev 
377708da532bSDmitry Karpeev   Input Parameter:
3778bb7acecfSBarry Smith . dm - the `DM` object to destroy
377908da532bSDmitry Karpeev 
378008da532bSDmitry Karpeev   Output Parameter:
3781bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the variable bounds function exists
378208da532bSDmitry Karpeev 
378308da532bSDmitry Karpeev   Level: developer
378408da532bSDmitry Karpeev 
37851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
378608da532bSDmitry Karpeev @*/
3787d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasVariableBounds(DM dm, PetscBool *flg)
3788d71ae5a4SJacob Faibussowitsch {
378908da532bSDmitry Karpeev   PetscFunctionBegin;
37905a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
37914f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
379208da532bSDmitry Karpeev   *flg = (dm->ops->computevariablebounds) ? PETSC_TRUE : PETSC_FALSE;
37933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
379408da532bSDmitry Karpeev }
379508da532bSDmitry Karpeev 
379608da532bSDmitry Karpeev /*@C
3797bb7acecfSBarry Smith   DMComputeVariableBounds - compute variable bounds used by `SNESVI`.
379808da532bSDmitry Karpeev 
379920f4b53cSBarry Smith   Logically Collective
380008da532bSDmitry Karpeev 
3801f899ff85SJose E. Roman   Input Parameter:
3802bb7acecfSBarry Smith . dm - the `DM` object
380308da532bSDmitry Karpeev 
380460225df5SJacob Faibussowitsch   Output Parameters:
380508da532bSDmitry Karpeev + xl - lower bound
380608da532bSDmitry Karpeev - xu - upper bound
380708da532bSDmitry Karpeev 
3808907376e6SBarry Smith   Level: advanced
3809907376e6SBarry Smith 
381020f4b53cSBarry Smith   Note:
381195452b02SPatrick Sanan   This is generally not called by users. It calls the function provided by the user with DMSetVariableBounds()
381208da532bSDmitry Karpeev 
38131cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
381408da532bSDmitry Karpeev @*/
3815d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeVariableBounds(DM dm, Vec xl, Vec xu)
3816d71ae5a4SJacob Faibussowitsch {
381708da532bSDmitry Karpeev   PetscFunctionBegin;
38185a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
381908da532bSDmitry Karpeev   PetscValidHeaderSpecific(xl, VEC_CLASSID, 2);
38205a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(xu, VEC_CLASSID, 3);
3821dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, computevariablebounds, xl, xu);
38223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
382308da532bSDmitry Karpeev }
382408da532bSDmitry Karpeev 
3825b0ae01b7SPeter Brune /*@
3826bb7acecfSBarry Smith   DMHasColoring - does the `DM` object have a method of providing a coloring?
3827b0ae01b7SPeter Brune 
3828b0ae01b7SPeter Brune   Not Collective
3829b0ae01b7SPeter Brune 
3830b0ae01b7SPeter Brune   Input Parameter:
3831b0ae01b7SPeter Brune . dm - the DM object
3832b0ae01b7SPeter Brune 
3833b0ae01b7SPeter Brune   Output Parameter:
3834bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateColoring()`.
3835b0ae01b7SPeter Brune 
3836b0ae01b7SPeter Brune   Level: developer
3837b0ae01b7SPeter Brune 
38381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateColoring()`
3839b0ae01b7SPeter Brune @*/
3840d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasColoring(DM dm, PetscBool *flg)
3841d71ae5a4SJacob Faibussowitsch {
3842b0ae01b7SPeter Brune   PetscFunctionBegin;
38435a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
38444f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
3845b0ae01b7SPeter Brune   *flg = (dm->ops->getcoloring) ? PETSC_TRUE : PETSC_FALSE;
38463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3847b0ae01b7SPeter Brune }
3848b0ae01b7SPeter Brune 
38493ad4599aSBarry Smith /*@
3850bb7acecfSBarry Smith   DMHasCreateRestriction - does the `DM` object have a method of providing a restriction?
38513ad4599aSBarry Smith 
38523ad4599aSBarry Smith   Not Collective
38533ad4599aSBarry Smith 
38543ad4599aSBarry Smith   Input Parameter:
3855bb7acecfSBarry Smith . dm - the `DM` object
38563ad4599aSBarry Smith 
38573ad4599aSBarry Smith   Output Parameter:
3858bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateRestriction()`.
38593ad4599aSBarry Smith 
38603ad4599aSBarry Smith   Level: developer
38613ad4599aSBarry Smith 
38621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateRestriction()`, `DMHasCreateInterpolation()`, `DMHasCreateInjection()`
38633ad4599aSBarry Smith @*/
3864d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateRestriction(DM dm, PetscBool *flg)
3865d71ae5a4SJacob Faibussowitsch {
38663ad4599aSBarry Smith   PetscFunctionBegin;
38675a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
38684f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
38693ad4599aSBarry Smith   *flg = (dm->ops->createrestriction) ? PETSC_TRUE : PETSC_FALSE;
38703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
38713ad4599aSBarry Smith }
38723ad4599aSBarry Smith 
3873a7058e45SLawrence Mitchell /*@
3874bb7acecfSBarry Smith   DMHasCreateInjection - does the `DM` object have a method of providing an injection?
3875a7058e45SLawrence Mitchell 
3876a7058e45SLawrence Mitchell   Not Collective
3877a7058e45SLawrence Mitchell 
3878a7058e45SLawrence Mitchell   Input Parameter:
3879bb7acecfSBarry Smith . dm - the `DM` object
3880a7058e45SLawrence Mitchell 
3881a7058e45SLawrence Mitchell   Output Parameter:
3882bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateInjection()`.
3883a7058e45SLawrence Mitchell 
3884a7058e45SLawrence Mitchell   Level: developer
3885a7058e45SLawrence Mitchell 
38861cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateInjection()`, `DMHasCreateRestriction()`, `DMHasCreateInterpolation()`
3887a7058e45SLawrence Mitchell @*/
3888d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateInjection(DM dm, PetscBool *flg)
3889d71ae5a4SJacob Faibussowitsch {
3890a7058e45SLawrence Mitchell   PetscFunctionBegin;
38915a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
38924f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
3893dbbe0bcdSBarry Smith   if (dm->ops->hascreateinjection) PetscUseTypeMethod(dm, hascreateinjection, flg);
3894ad540459SPierre Jolivet   else *flg = (dm->ops->createinjection) ? PETSC_TRUE : PETSC_FALSE;
38953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3896a7058e45SLawrence Mitchell }
3897a7058e45SLawrence Mitchell 
38980298fd71SBarry Smith PetscFunctionList DMList              = NULL;
3899264ace61SBarry Smith PetscBool         DMRegisterAllCalled = PETSC_FALSE;
3900264ace61SBarry Smith 
3901264ace61SBarry Smith /*@C
3902bb7acecfSBarry Smith   DMSetType - Builds a `DM`, for a particular `DM` implementation.
3903264ace61SBarry Smith 
390420f4b53cSBarry Smith   Collective
3905264ace61SBarry Smith 
3906264ace61SBarry Smith   Input Parameters:
3907bb7acecfSBarry Smith + dm     - The `DM` object
3908bb7acecfSBarry Smith - method - The name of the `DMType`, for example `DMDA`, `DMPLEX`
3909264ace61SBarry Smith 
3910264ace61SBarry Smith   Options Database Key:
3911bb7acecfSBarry Smith . -dm_type <type> - Sets the `DM` type; use -help for a list of available types
3912264ace61SBarry Smith 
3913264ace61SBarry Smith   Level: intermediate
3914264ace61SBarry Smith 
3915bb7acecfSBarry Smith   Note:
39160462cc06SPierre Jolivet   Of the `DM` is constructed by directly calling a function to construct a particular `DM`, for example, `DMDACreate2d()` or `DMPlexCreateBoxMesh()`
3917bb7acecfSBarry Smith 
39181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMGetType()`, `DMCreate()`, `DMDACreate2d()`
3919264ace61SBarry Smith @*/
3920d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetType(DM dm, DMType method)
3921d71ae5a4SJacob Faibussowitsch {
3922264ace61SBarry Smith   PetscErrorCode (*r)(DM);
3923264ace61SBarry Smith   PetscBool match;
3924264ace61SBarry Smith 
3925264ace61SBarry Smith   PetscFunctionBegin;
3926264ace61SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
39279566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, method, &match));
39283ba16761SJacob Faibussowitsch   if (match) PetscFunctionReturn(PETSC_SUCCESS);
3929264ace61SBarry Smith 
39309566063dSJacob Faibussowitsch   PetscCall(DMRegisterAll());
39319566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListFind(DMList, method, &r));
39327a8be351SBarry Smith   PetscCheck(r, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown DM type: %s", method);
3933264ace61SBarry Smith 
3934dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, destroy);
39359566063dSJacob Faibussowitsch   PetscCall(PetscMemzero(dm->ops, sizeof(*dm->ops)));
39369566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)dm, method));
39379566063dSJacob Faibussowitsch   PetscCall((*r)(dm));
39383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3939264ace61SBarry Smith }
3940264ace61SBarry Smith 
3941264ace61SBarry Smith /*@C
3942bb7acecfSBarry Smith   DMGetType - Gets the `DM` type name (as a string) from the `DM`.
3943264ace61SBarry Smith 
3944264ace61SBarry Smith   Not Collective
3945264ace61SBarry Smith 
3946264ace61SBarry Smith   Input Parameter:
3947bb7acecfSBarry Smith . dm - The `DM`
3948264ace61SBarry Smith 
3949264ace61SBarry Smith   Output Parameter:
3950bb7acecfSBarry Smith . type - The `DMType` name
3951264ace61SBarry Smith 
3952264ace61SBarry Smith   Level: intermediate
3953264ace61SBarry Smith 
39541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMSetType()`, `DMCreate()`
3955264ace61SBarry Smith @*/
3956d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetType(DM dm, DMType *type)
3957d71ae5a4SJacob Faibussowitsch {
3958264ace61SBarry Smith   PetscFunctionBegin;
3959264ace61SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
39604f572ea9SToby Isaac   PetscAssertPointer(type, 2);
39619566063dSJacob Faibussowitsch   PetscCall(DMRegisterAll());
3962264ace61SBarry Smith   *type = ((PetscObject)dm)->type_name;
39633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3964264ace61SBarry Smith }
3965264ace61SBarry Smith 
396667a56275SMatthew G Knepley /*@C
3967bb7acecfSBarry Smith   DMConvert - Converts a `DM` to another `DM`, either of the same or different type.
396867a56275SMatthew G Knepley 
396920f4b53cSBarry Smith   Collective
397067a56275SMatthew G Knepley 
397167a56275SMatthew G Knepley   Input Parameters:
3972bb7acecfSBarry Smith + dm      - the `DM`
3973bb7acecfSBarry Smith - newtype - new `DM` type (use "same" for the same type)
397467a56275SMatthew G Knepley 
397567a56275SMatthew G Knepley   Output Parameter:
3976bb7acecfSBarry Smith . M - pointer to new `DM`
397767a56275SMatthew G Knepley 
397820f4b53cSBarry Smith   Level: intermediate
397920f4b53cSBarry Smith 
398073ff1848SBarry Smith   Note:
3981bb7acecfSBarry Smith   Cannot be used to convert a sequential `DM` to a parallel or a parallel to sequential,
3982bb7acecfSBarry Smith   the MPI communicator of the generated `DM` is always the same as the communicator
3983bb7acecfSBarry Smith   of the input `DM`.
398467a56275SMatthew G Knepley 
39851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMCreate()`, `DMClone()`
398667a56275SMatthew G Knepley @*/
3987d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConvert(DM dm, DMType newtype, DM *M)
3988d71ae5a4SJacob Faibussowitsch {
398967a56275SMatthew G Knepley   DM        B;
399067a56275SMatthew G Knepley   char      convname[256];
3991c067b6caSMatthew G. Knepley   PetscBool sametype /*, issame */;
399267a56275SMatthew G Knepley 
399367a56275SMatthew G Knepley   PetscFunctionBegin;
399467a56275SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
399567a56275SMatthew G Knepley   PetscValidType(dm, 1);
39964f572ea9SToby Isaac   PetscAssertPointer(M, 3);
39979566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, newtype, &sametype));
39989566063dSJacob Faibussowitsch   /* PetscCall(PetscStrcmp(newtype, "same", &issame)); */
3999c067b6caSMatthew G. Knepley   if (sametype) {
4000c067b6caSMatthew G. Knepley     *M = dm;
40019566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
40023ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
4003c067b6caSMatthew G. Knepley   } else {
40040298fd71SBarry Smith     PetscErrorCode (*conv)(DM, DMType, DM *) = NULL;
400567a56275SMatthew G Knepley 
400667a56275SMatthew G Knepley     /*
400767a56275SMatthew G Knepley        Order of precedence:
400867a56275SMatthew G Knepley        1) See if a specialized converter is known to the current DM.
400967a56275SMatthew G Knepley        2) See if a specialized converter is known to the desired DM class.
401067a56275SMatthew G Knepley        3) See if a good general converter is registered for the desired class
401167a56275SMatthew G Knepley        4) See if a good general converter is known for the current matrix.
401267a56275SMatthew G Knepley        5) Use a really basic converter.
401367a56275SMatthew G Knepley     */
401467a56275SMatthew G Knepley 
401567a56275SMatthew G Knepley     /* 1) See if a specialized converter is known to the current DM and the desired class */
40169566063dSJacob Faibussowitsch     PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname)));
40179566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname)));
40189566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_", sizeof(convname)));
40199566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, newtype, sizeof(convname)));
40209566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_C", sizeof(convname)));
40219566063dSJacob Faibussowitsch     PetscCall(PetscObjectQueryFunction((PetscObject)dm, convname, &conv));
402267a56275SMatthew G Knepley     if (conv) goto foundconv;
402367a56275SMatthew G Knepley 
402467a56275SMatthew G Knepley     /* 2)  See if a specialized converter is known to the desired DM class. */
40259566063dSJacob Faibussowitsch     PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &B));
40269566063dSJacob Faibussowitsch     PetscCall(DMSetType(B, newtype));
40279566063dSJacob Faibussowitsch     PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname)));
40289566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname)));
40299566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_", sizeof(convname)));
40309566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, newtype, sizeof(convname)));
40319566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_C", sizeof(convname)));
40329566063dSJacob Faibussowitsch     PetscCall(PetscObjectQueryFunction((PetscObject)B, convname, &conv));
403367a56275SMatthew G Knepley     if (conv) {
40349566063dSJacob Faibussowitsch       PetscCall(DMDestroy(&B));
403567a56275SMatthew G Knepley       goto foundconv;
403667a56275SMatthew G Knepley     }
403767a56275SMatthew G Knepley 
403867a56275SMatthew G Knepley #if 0
403967a56275SMatthew G Knepley     /* 3) See if a good general converter is registered for the desired class */
404067a56275SMatthew G Knepley     conv = B->ops->convertfrom;
40419566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&B));
404267a56275SMatthew G Knepley     if (conv) goto foundconv;
404367a56275SMatthew G Knepley 
404467a56275SMatthew G Knepley     /* 4) See if a good general converter is known for the current matrix */
404567a56275SMatthew G Knepley     if (dm->ops->convert) {
404667a56275SMatthew G Knepley       conv = dm->ops->convert;
404767a56275SMatthew G Knepley     }
404867a56275SMatthew G Knepley     if (conv) goto foundconv;
404967a56275SMatthew G Knepley #endif
405067a56275SMatthew G Knepley 
405167a56275SMatthew G Knepley     /* 5) Use a really basic converter. */
405298921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No conversion possible between DM types %s and %s", ((PetscObject)dm)->type_name, newtype);
405367a56275SMatthew G Knepley 
405467a56275SMatthew G Knepley   foundconv:
40559566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(DM_Convert, dm, 0, 0, 0));
40569566063dSJacob Faibussowitsch     PetscCall((*conv)(dm, newtype, M));
405712fa691eSMatthew G. Knepley     /* Things that are independent of DM type: We should consult DMClone() here */
405890b157c4SStefano Zampini     {
40594fb89dddSMatthew G. Knepley       const PetscReal *maxCell, *Lstart, *L;
40606858538eSMatthew G. Knepley 
40614fb89dddSMatthew G. Knepley       PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
40624fb89dddSMatthew G. Knepley       PetscCall(DMSetPeriodicity(*M, maxCell, Lstart, L));
4063c8a6034eSMark       (*M)->prealloc_only = dm->prealloc_only;
40649566063dSJacob Faibussowitsch       PetscCall(PetscFree((*M)->vectype));
40659566063dSJacob Faibussowitsch       PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*M)->vectype));
40669566063dSJacob Faibussowitsch       PetscCall(PetscFree((*M)->mattype));
40679566063dSJacob Faibussowitsch       PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*M)->mattype));
406812fa691eSMatthew G. Knepley     }
40699566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(DM_Convert, dm, 0, 0, 0));
407067a56275SMatthew G Knepley   }
40719566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)*M));
40723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
407367a56275SMatthew G Knepley }
4074264ace61SBarry Smith 
4075264ace61SBarry Smith /*--------------------------------------------------------------------------------------------------------------------*/
4076264ace61SBarry Smith 
4077264ace61SBarry Smith /*@C
4078bb7acecfSBarry Smith   DMRegister -  Adds a new `DM` type implementation
40791c84c290SBarry Smith 
40801c84c290SBarry Smith   Not Collective
40811c84c290SBarry Smith 
40821c84c290SBarry Smith   Input Parameters:
408320f4b53cSBarry Smith + sname    - The name of a new user-defined creation routine
408420f4b53cSBarry Smith - function - The creation routine itself
408520f4b53cSBarry Smith 
408620f4b53cSBarry Smith   Level: advanced
40871c84c290SBarry Smith 
408873ff1848SBarry Smith   Note:
408920f4b53cSBarry Smith   `DMRegister()` may be called multiple times to add several user-defined `DM`s
40901c84c290SBarry Smith 
409160225df5SJacob Faibussowitsch   Example Usage:
40921c84c290SBarry Smith .vb
4093bdf89e91SBarry Smith     DMRegister("my_da", MyDMCreate);
40941c84c290SBarry Smith .ve
40951c84c290SBarry Smith 
409620f4b53cSBarry Smith   Then, your `DM` type can be chosen with the procedural interface via
40971c84c290SBarry Smith .vb
40981c84c290SBarry Smith     DMCreate(MPI_Comm, DM *);
40991c84c290SBarry Smith     DMSetType(DM,"my_da");
41001c84c290SBarry Smith .ve
41011c84c290SBarry Smith   or at runtime via the option
41021c84c290SBarry Smith .vb
41031c84c290SBarry Smith     -da_type my_da
41041c84c290SBarry Smith .ve
4105264ace61SBarry Smith 
41061cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMSetType()`, `DMRegisterAll()`, `DMRegisterDestroy()`
4107264ace61SBarry Smith @*/
4108d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRegister(const char sname[], PetscErrorCode (*function)(DM))
4109d71ae5a4SJacob Faibussowitsch {
4110264ace61SBarry Smith   PetscFunctionBegin;
41119566063dSJacob Faibussowitsch   PetscCall(DMInitializePackage());
41129566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListAdd(&DMList, sname, function));
41133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4114264ace61SBarry Smith }
4115264ace61SBarry Smith 
4116b859378eSBarry Smith /*@C
4117bb7acecfSBarry Smith   DMLoad - Loads a DM that has been stored in binary  with `DMView()`.
4118b859378eSBarry Smith 
411920f4b53cSBarry Smith   Collective
4120b859378eSBarry Smith 
4121b859378eSBarry Smith   Input Parameters:
4122bb7acecfSBarry Smith + newdm  - the newly loaded `DM`, this needs to have been created with `DMCreate()` or
4123bb7acecfSBarry Smith            some related function before a call to `DMLoad()`.
4124bb7acecfSBarry Smith - viewer - binary file viewer, obtained from `PetscViewerBinaryOpen()` or
4125bb7acecfSBarry Smith            `PETSCVIEWERHDF5` file viewer, obtained from `PetscViewerHDF5Open()`
4126b859378eSBarry Smith 
4127b859378eSBarry Smith   Level: intermediate
4128b859378eSBarry Smith 
4129b859378eSBarry Smith   Notes:
413055849f57SBarry Smith   The type is determined by the data in the file, any type set into the DM before this call is ignored.
4131b859378eSBarry Smith 
4132bb7acecfSBarry Smith   Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` format, one can save multiple `DMPLEX`
4133bb7acecfSBarry Smith   meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()`
4134bb7acecfSBarry Smith   before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object.
4135cd7e8a5eSksagiyam 
41361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewerBinaryOpen()`, `DMView()`, `MatLoad()`, `VecLoad()`
4137b859378eSBarry Smith @*/
4138d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLoad(DM newdm, PetscViewer viewer)
4139d71ae5a4SJacob Faibussowitsch {
41409331c7a4SMatthew G. Knepley   PetscBool isbinary, ishdf5;
4141b859378eSBarry Smith 
4142b859378eSBarry Smith   PetscFunctionBegin;
4143b859378eSBarry Smith   PetscValidHeaderSpecific(newdm, DM_CLASSID, 1);
4144b859378eSBarry Smith   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
41459566063dSJacob Faibussowitsch   PetscCall(PetscViewerCheckReadable(viewer));
41469566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
41479566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
41489566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_Load, viewer, 0, 0, 0));
41499331c7a4SMatthew G. Knepley   if (isbinary) {
41509331c7a4SMatthew G. Knepley     PetscInt classid;
41519331c7a4SMatthew G. Knepley     char     type[256];
4152b859378eSBarry Smith 
41539566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryRead(viewer, &classid, 1, NULL, PETSC_INT));
41547a8be351SBarry Smith     PetscCheck(classid == DM_FILE_CLASSID, PetscObjectComm((PetscObject)newdm), PETSC_ERR_ARG_WRONG, "Not DM next in file, classid found %d", (int)classid);
41559566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryRead(viewer, type, 256, NULL, PETSC_CHAR));
41569566063dSJacob Faibussowitsch     PetscCall(DMSetType(newdm, type));
4157dbbe0bcdSBarry Smith     PetscTryTypeMethod(newdm, load, viewer);
41589331c7a4SMatthew G. Knepley   } else if (ishdf5) {
4159dbbe0bcdSBarry Smith     PetscTryTypeMethod(newdm, load, viewer);
41609331c7a4SMatthew G. Knepley   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerBinaryOpen() or PetscViewerHDF5Open()");
41619566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_Load, viewer, 0, 0, 0));
41623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4163b859378eSBarry Smith }
4164b859378eSBarry Smith 
41657da65231SMatthew G Knepley /******************************** FEM Support **********************************/
41667da65231SMatthew G Knepley 
41672ecf6ec3SMatthew G. Knepley PetscErrorCode DMPrintCellIndices(PetscInt c, const char name[], PetscInt len, const PetscInt x[])
41682ecf6ec3SMatthew G. Knepley {
41692ecf6ec3SMatthew G. Knepley   PetscInt f;
41702ecf6ec3SMatthew G. Knepley 
41712ecf6ec3SMatthew G. Knepley   PetscFunctionBegin;
41722ecf6ec3SMatthew G. Knepley   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
41732ecf6ec3SMatthew G. Knepley   for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  | %" PetscInt_FMT " |\n", x[f]));
41742ecf6ec3SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
41752ecf6ec3SMatthew G. Knepley }
41762ecf6ec3SMatthew G. Knepley 
4177d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellVector(PetscInt c, const char name[], PetscInt len, const PetscScalar x[])
4178d71ae5a4SJacob Faibussowitsch {
41791d47ebbbSSatish Balay   PetscInt f;
41801b30c384SMatthew G Knepley 
41817da65231SMatthew G Knepley   PetscFunctionBegin;
418263a3b9bcSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
418348a46eb9SPierre Jolivet   for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  | %g |\n", (double)PetscRealPart(x[f])));
41843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
41857da65231SMatthew G Knepley }
41867da65231SMatthew G Knepley 
41875962854dSMatthew G. Knepley PetscErrorCode DMPrintCellVectorReal(PetscInt c, const char name[], PetscInt len, const PetscReal x[])
41885962854dSMatthew G. Knepley {
41895962854dSMatthew G. Knepley   PetscInt f;
41905962854dSMatthew G. Knepley 
41915962854dSMatthew G. Knepley   PetscFunctionBegin;
41925962854dSMatthew G. Knepley   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
41935962854dSMatthew G. Knepley   for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  | %g |\n", (double)x[f]));
41945962854dSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
41955962854dSMatthew G. Knepley }
41965962854dSMatthew G. Knepley 
4197d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellMatrix(PetscInt c, const char name[], PetscInt rows, PetscInt cols, const PetscScalar A[])
4198d71ae5a4SJacob Faibussowitsch {
41991b30c384SMatthew G Knepley   PetscInt f, g;
42007da65231SMatthew G Knepley 
42017da65231SMatthew G Knepley   PetscFunctionBegin;
420263a3b9bcSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
42031d47ebbbSSatish Balay   for (f = 0; f < rows; ++f) {
42049566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PETSC_COMM_SELF, "  |"));
420548a46eb9SPierre Jolivet     for (g = 0; g < cols; ++g) PetscCall(PetscPrintf(PETSC_COMM_SELF, " % 9.5g", (double)PetscRealPart(A[f * cols + g])));
42069566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PETSC_COMM_SELF, " |\n"));
42077da65231SMatthew G Knepley   }
42083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42097da65231SMatthew G Knepley }
4210e7c4fc90SDmitry Karpeev 
4211d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintLocalVec(DM dm, const char name[], PetscReal tol, Vec X)
4212d71ae5a4SJacob Faibussowitsch {
42130c5b8624SToby Isaac   PetscInt           localSize, bs;
42140c5b8624SToby Isaac   PetscMPIInt        size;
42150c5b8624SToby Isaac   Vec                x, xglob;
42160c5b8624SToby Isaac   const PetscScalar *xarray;
4217e759306cSMatthew G. Knepley 
4218e759306cSMatthew G. Knepley   PetscFunctionBegin;
42199566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
42209566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(X, &x));
42219566063dSJacob Faibussowitsch   PetscCall(VecCopy(X, x));
422293ec0da9SPierre Jolivet   PetscCall(VecFilter(x, tol));
42239566063dSJacob Faibussowitsch   PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "%s:\n", name));
42240c5b8624SToby Isaac   if (size > 1) {
42259566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(x, &localSize));
42269566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xarray));
42279566063dSJacob Faibussowitsch     PetscCall(VecGetBlockSize(x, &bs));
42289566063dSJacob Faibussowitsch     PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)dm), bs, localSize, PETSC_DETERMINE, xarray, &xglob));
42290c5b8624SToby Isaac   } else {
42300c5b8624SToby Isaac     xglob = x;
42310c5b8624SToby Isaac   }
42329566063dSJacob Faibussowitsch   PetscCall(VecView(xglob, PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)dm))));
42330c5b8624SToby Isaac   if (size > 1) {
42349566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xglob));
42359566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xarray));
42360c5b8624SToby Isaac   }
42379566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
42383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4239e759306cSMatthew G. Knepley }
4240e759306cSMatthew G. Knepley 
424188ed4aceSMatthew G Knepley /*@
4242bb7acecfSBarry Smith   DMGetSection - Get the `PetscSection` encoding the local data layout for the `DM`.   This is equivalent to `DMGetLocalSection()`. Deprecated in v3.12
4243061576a5SJed Brown 
4244061576a5SJed Brown   Input Parameter:
4245bb7acecfSBarry Smith . dm - The `DM`
4246061576a5SJed Brown 
4247061576a5SJed Brown   Output Parameter:
4248bb7acecfSBarry Smith . section - The `PetscSection`
4249061576a5SJed Brown 
425020f4b53cSBarry Smith   Options Database Key:
4251bb7acecfSBarry Smith . -dm_petscsection_view - View the `PetscSection` created by the `DM`
4252061576a5SJed Brown 
4253061576a5SJed Brown   Level: advanced
4254061576a5SJed Brown 
4255061576a5SJed Brown   Notes:
4256bb7acecfSBarry Smith   Use `DMGetLocalSection()` in new code.
4257061576a5SJed Brown 
4258bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
4259061576a5SJed Brown 
42601cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetLocalSection()`, `DMSetLocalSection()`, `DMGetGlobalSection()`
4261061576a5SJed Brown @*/
4262d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSection(DM dm, PetscSection *section)
4263d71ae5a4SJacob Faibussowitsch {
4264061576a5SJed Brown   PetscFunctionBegin;
42659566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, section));
42663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4267061576a5SJed Brown }
4268061576a5SJed Brown 
4269061576a5SJed Brown /*@
4270bb7acecfSBarry Smith   DMGetLocalSection - Get the `PetscSection` encoding the local data layout for the `DM`.
427188ed4aceSMatthew G Knepley 
427288ed4aceSMatthew G Knepley   Input Parameter:
4273bb7acecfSBarry Smith . dm - The `DM`
427488ed4aceSMatthew G Knepley 
427588ed4aceSMatthew G Knepley   Output Parameter:
4276bb7acecfSBarry Smith . section - The `PetscSection`
427788ed4aceSMatthew G Knepley 
427820f4b53cSBarry Smith   Options Database Key:
4279bb7acecfSBarry Smith . -dm_petscsection_view - View the section created by the `DM`
4280e5893cccSMatthew G. Knepley 
428188ed4aceSMatthew G Knepley   Level: intermediate
428288ed4aceSMatthew G Knepley 
4283bb7acecfSBarry Smith   Note:
4284bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
428588ed4aceSMatthew G Knepley 
42861cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetGlobalSection()`
428788ed4aceSMatthew G Knepley @*/
4288d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalSection(DM dm, PetscSection *section)
4289d71ae5a4SJacob Faibussowitsch {
429088ed4aceSMatthew G Knepley   PetscFunctionBegin;
429188ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
42924f572ea9SToby Isaac   PetscAssertPointer(section, 2);
42931bb6d2a8SBarry Smith   if (!dm->localSection && dm->ops->createlocalsection) {
4294e5e52638SMatthew G. Knepley     PetscInt d;
4295e5e52638SMatthew G. Knepley 
429645480ffeSMatthew G. Knepley     if (dm->setfromoptionscalled) {
429745480ffeSMatthew G. Knepley       PetscObject       obj = (PetscObject)dm;
429845480ffeSMatthew G. Knepley       PetscViewer       viewer;
429945480ffeSMatthew G. Knepley       PetscViewerFormat format;
430045480ffeSMatthew G. Knepley       PetscBool         flg;
430145480ffeSMatthew G. Knepley 
43029566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetViewer(PetscObjectComm(obj), obj->options, obj->prefix, "-dm_petscds_view", &viewer, &format, &flg));
43039566063dSJacob Faibussowitsch       if (flg) PetscCall(PetscViewerPushFormat(viewer, format));
430445480ffeSMatthew G. Knepley       for (d = 0; d < dm->Nds; ++d) {
43059566063dSJacob Faibussowitsch         PetscCall(PetscDSSetFromOptions(dm->probs[d].ds));
43069566063dSJacob Faibussowitsch         if (flg) PetscCall(PetscDSView(dm->probs[d].ds, viewer));
430745480ffeSMatthew G. Knepley       }
430845480ffeSMatthew G. Knepley       if (flg) {
43099566063dSJacob Faibussowitsch         PetscCall(PetscViewerFlush(viewer));
43109566063dSJacob Faibussowitsch         PetscCall(PetscViewerPopFormat(viewer));
4311cd791dc2SBarry Smith         PetscCall(PetscOptionsRestoreViewer(&viewer));
431245480ffeSMatthew G. Knepley       }
431345480ffeSMatthew G. Knepley     }
4314dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm, createlocalsection);
43159566063dSJacob Faibussowitsch     if (dm->localSection) PetscCall(PetscObjectViewFromOptions((PetscObject)dm->localSection, NULL, "-dm_petscsection_view"));
43162f0f8703SMatthew G. Knepley   }
43171bb6d2a8SBarry Smith   *section = dm->localSection;
43183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
431988ed4aceSMatthew G Knepley }
432088ed4aceSMatthew G Knepley 
432188ed4aceSMatthew G Knepley /*@
4322bb7acecfSBarry Smith   DMSetSection - Set the `PetscSection` encoding the local data layout for the `DM`.  This is equivalent to `DMSetLocalSection()`. Deprecated in v3.12
4323061576a5SJed Brown 
4324061576a5SJed Brown   Input Parameters:
4325bb7acecfSBarry Smith + dm      - The `DM`
4326bb7acecfSBarry Smith - section - The `PetscSection`
4327061576a5SJed Brown 
4328061576a5SJed Brown   Level: advanced
4329061576a5SJed Brown 
4330061576a5SJed Brown   Notes:
4331bb7acecfSBarry Smith   Use `DMSetLocalSection()` in new code.
4332061576a5SJed Brown 
4333bb7acecfSBarry Smith   Any existing `PetscSection` will be destroyed
4334061576a5SJed Brown 
43351cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()`, `DMSetGlobalSection()`
4336061576a5SJed Brown @*/
4337d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSection(DM dm, PetscSection section)
4338d71ae5a4SJacob Faibussowitsch {
4339061576a5SJed Brown   PetscFunctionBegin;
43409566063dSJacob Faibussowitsch   PetscCall(DMSetLocalSection(dm, section));
43413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4342061576a5SJed Brown }
4343061576a5SJed Brown 
4344061576a5SJed Brown /*@
4345bb7acecfSBarry Smith   DMSetLocalSection - Set the `PetscSection` encoding the local data layout for the `DM`.
434688ed4aceSMatthew G Knepley 
434788ed4aceSMatthew G Knepley   Input Parameters:
4348bb7acecfSBarry Smith + dm      - The `DM`
4349bb7acecfSBarry Smith - section - The `PetscSection`
435088ed4aceSMatthew G Knepley 
435188ed4aceSMatthew G Knepley   Level: intermediate
435288ed4aceSMatthew G Knepley 
4353bb7acecfSBarry Smith   Note:
4354bb7acecfSBarry Smith   Any existing Section will be destroyed
435588ed4aceSMatthew G Knepley 
43561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMSetGlobalSection()`
435788ed4aceSMatthew G Knepley @*/
4358d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLocalSection(DM dm, PetscSection section)
4359d71ae5a4SJacob Faibussowitsch {
4360c473ab19SMatthew G. Knepley   PetscInt numFields = 0;
4361af122d2aSMatthew G Knepley   PetscInt f;
436288ed4aceSMatthew G Knepley 
436388ed4aceSMatthew G Knepley   PetscFunctionBegin;
436488ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4365b9d85ea2SLisandro Dalcin   if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
43669566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)section));
43679566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->localSection));
43681bb6d2a8SBarry Smith   dm->localSection = section;
43699566063dSJacob Faibussowitsch   if (section) PetscCall(PetscSectionGetNumFields(dm->localSection, &numFields));
4370af122d2aSMatthew G Knepley   if (numFields) {
43719566063dSJacob Faibussowitsch     PetscCall(DMSetNumFields(dm, numFields));
4372af122d2aSMatthew G Knepley     for (f = 0; f < numFields; ++f) {
43730f21e855SMatthew G. Knepley       PetscObject disc;
4374af122d2aSMatthew G Knepley       const char *name;
4375af122d2aSMatthew G Knepley 
43769566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldName(dm->localSection, f, &name));
43779566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, f, NULL, &disc));
43789566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName(disc, name));
4379af122d2aSMatthew G Knepley     }
4380af122d2aSMatthew G Knepley   }
438150350c8eSStefano Zampini   /* The global section and the SectionSF will be rebuilt
438250350c8eSStefano Zampini      in the next call to DMGetGlobalSection() and DMGetSectionSF(). */
43839566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->globalSection));
438450350c8eSStefano Zampini   PetscCall(PetscSFDestroy(&dm->sectionSF));
438552947b74SStefano Zampini   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF));
438650350c8eSStefano Zampini 
438750350c8eSStefano Zampini   /* Clear scratch vectors */
438850350c8eSStefano Zampini   PetscCall(DMClearGlobalVectors(dm));
438950350c8eSStefano Zampini   PetscCall(DMClearLocalVectors(dm));
439050350c8eSStefano Zampini   PetscCall(DMClearNamedGlobalVectors(dm));
439150350c8eSStefano Zampini   PetscCall(DMClearNamedLocalVectors(dm));
43923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
439388ed4aceSMatthew G Knepley }
439488ed4aceSMatthew G Knepley 
4395adc21957SMatthew G. Knepley /*@C
4396*d8b4a066SPierre Jolivet   DMCreateSectionPermutation - Create a permutation of the `PetscSection` chart and optionally a block structure.
4397adc21957SMatthew G. Knepley 
4398adc21957SMatthew G. Knepley   Input Parameter:
4399adc21957SMatthew G. Knepley . dm - The `DM`
4400adc21957SMatthew G. Knepley 
44019cde84edSJose E. Roman   Output Parameters:
4402adc21957SMatthew G. Knepley + perm        - A permutation of the mesh points in the chart
4403adc21957SMatthew G. Knepley - blockStarts - A high bit is set for the point that begins every block, or NULL for default blocking
4404adc21957SMatthew G. Knepley 
4405adc21957SMatthew G. Knepley   Level: developer
4406adc21957SMatthew G. Knepley 
4407adc21957SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMGetGlobalSection()`
4408adc21957SMatthew G. Knepley @*/
4409adc21957SMatthew G. Knepley PetscErrorCode DMCreateSectionPermutation(DM dm, IS *perm, PetscBT *blockStarts)
4410adc21957SMatthew G. Knepley {
4411adc21957SMatthew G. Knepley   PetscFunctionBegin;
4412adc21957SMatthew G. Knepley   *perm        = NULL;
4413adc21957SMatthew G. Knepley   *blockStarts = NULL;
4414adc21957SMatthew G. Knepley   PetscTryTypeMethod(dm, createsectionpermutation, perm, blockStarts);
4415adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
4416adc21957SMatthew G. Knepley }
4417adc21957SMatthew G. Knepley 
44189435951eSToby Isaac /*@
4419bb7acecfSBarry Smith   DMGetDefaultConstraints - Get the `PetscSection` and `Mat` that specify the local constraint interpolation. See `DMSetDefaultConstraints()` for a description of the purpose of constraint interpolation.
44209435951eSToby Isaac 
442120f4b53cSBarry Smith   not Collective
4422e228b242SToby Isaac 
44239435951eSToby Isaac   Input Parameter:
4424bb7acecfSBarry Smith . dm - The `DM`
44259435951eSToby Isaac 
4426d8d19677SJose E. Roman   Output Parameters:
442720f4b53cSBarry Smith + section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section.  Returns `NULL` if there are no local constraints.
442820f4b53cSBarry Smith . mat     - The `Mat` that interpolates local constraints: its width should be the layout size of the default section.  Returns `NULL` if there are no local constraints.
442979769bd5SJed Brown - bias    - Vector containing bias to be added to constrained dofs
44309435951eSToby Isaac 
44319435951eSToby Isaac   Level: advanced
44329435951eSToby Isaac 
4433bb7acecfSBarry Smith   Note:
4434bb7acecfSBarry Smith   This gets borrowed references, so the user should not destroy the `PetscSection`, `Mat`, or `Vec`.
44359435951eSToby Isaac 
44361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDefaultConstraints()`
44379435951eSToby Isaac @*/
4438d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDefaultConstraints(DM dm, PetscSection *section, Mat *mat, Vec *bias)
4439d71ae5a4SJacob Faibussowitsch {
44409435951eSToby Isaac   PetscFunctionBegin;
44419435951eSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4442dbbe0bcdSBarry Smith   if (!dm->defaultConstraint.section && !dm->defaultConstraint.mat && dm->ops->createdefaultconstraints) PetscUseTypeMethod(dm, createdefaultconstraints);
44433b8ba7d1SJed Brown   if (section) *section = dm->defaultConstraint.section;
44443b8ba7d1SJed Brown   if (mat) *mat = dm->defaultConstraint.mat;
444579769bd5SJed Brown   if (bias) *bias = dm->defaultConstraint.bias;
44463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
44479435951eSToby Isaac }
44489435951eSToby Isaac 
44499435951eSToby Isaac /*@
4450bb7acecfSBarry Smith   DMSetDefaultConstraints - Set the `PetscSection` and `Mat` that specify the local constraint interpolation.
44519435951eSToby Isaac 
445220f4b53cSBarry Smith   Collective
4453e228b242SToby Isaac 
44549435951eSToby Isaac   Input Parameters:
4455bb7acecfSBarry Smith + dm      - The `DM`
4456bb7acecfSBarry Smith . section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
445720f4b53cSBarry Smith . mat     - The `Mat` that interpolates local constraints: its width should be the layout size of the default section:  `NULL` indicates no constraints.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
445820f4b53cSBarry Smith - bias    - A bias vector to be added to constrained values in the local vector.  `NULL` indicates no bias.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
44599435951eSToby Isaac 
44609435951eSToby Isaac   Level: advanced
44619435951eSToby Isaac 
446220f4b53cSBarry Smith   Notes:
446320f4b53cSBarry Smith   If a constraint matrix is specified, then it is applied during `DMGlobalToLocalEnd()` when mode is `INSERT_VALUES`, `INSERT_BC_VALUES`, or `INSERT_ALL_VALUES`.  Without a constraint matrix, the local vector l returned by `DMGlobalToLocalEnd()` contains values that have been scattered from a global vector without modification; with a constraint matrix A, l is modified by computing c = A * l + bias, l[s[i]] = c[i], where the scatter s is defined by the `PetscSection` returned by `DMGetDefaultConstraints()`.
446420f4b53cSBarry Smith 
446520f4b53cSBarry Smith   If a constraint matrix is specified, then its adjoint is applied during `DMLocalToGlobalBegin()` when mode is `ADD_VALUES`, `ADD_BC_VALUES`, or `ADD_ALL_VALUES`.  Without a constraint matrix, the local vector l is accumulated into a global vector without modification; with a constraint matrix A, l is first modified by computing c[i] = l[s[i]], l[s[i]] = 0, l = l + A'*c, which is the adjoint of the operation described above.  Any bias, if specified, is ignored when accumulating.
446620f4b53cSBarry Smith 
4467bb7acecfSBarry Smith   This increments the references of the `PetscSection`, `Mat`, and `Vec`, so they user can destroy them.
44689435951eSToby Isaac 
44691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDefaultConstraints()`
44709435951eSToby Isaac @*/
4471d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDefaultConstraints(DM dm, PetscSection section, Mat mat, Vec bias)
4472d71ae5a4SJacob Faibussowitsch {
4473e228b242SToby Isaac   PetscMPIInt result;
44749435951eSToby Isaac 
44759435951eSToby Isaac   PetscFunctionBegin;
44769435951eSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4477e228b242SToby Isaac   if (section) {
4478e228b242SToby Isaac     PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
44799566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)section), &result));
44807a8be351SBarry Smith     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint section must have local communicator");
4481e228b242SToby Isaac   }
4482e228b242SToby Isaac   if (mat) {
4483e228b242SToby Isaac     PetscValidHeaderSpecific(mat, MAT_CLASSID, 3);
44849566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)mat), &result));
44857a8be351SBarry Smith     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint matrix must have local communicator");
4486e228b242SToby Isaac   }
448779769bd5SJed Brown   if (bias) {
448879769bd5SJed Brown     PetscValidHeaderSpecific(bias, VEC_CLASSID, 4);
44899566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)bias), &result));
449079769bd5SJed Brown     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint bias must have local communicator");
449179769bd5SJed Brown   }
44929566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)section));
44939566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->defaultConstraint.section));
44943b8ba7d1SJed Brown   dm->defaultConstraint.section = section;
44959566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)mat));
44969566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&dm->defaultConstraint.mat));
44973b8ba7d1SJed Brown   dm->defaultConstraint.mat = mat;
44989566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)bias));
44999566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&dm->defaultConstraint.bias));
450079769bd5SJed Brown   dm->defaultConstraint.bias = bias;
45013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
45029435951eSToby Isaac }
45039435951eSToby Isaac 
4504497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG)
4505507e4973SMatthew G. Knepley /*
4506bb7acecfSBarry Smith   DMDefaultSectionCheckConsistency - Check the consistentcy of the global and local sections. Generates and error if they are not consistent.
4507507e4973SMatthew G. Knepley 
4508507e4973SMatthew G. Knepley   Input Parameters:
4509bb7acecfSBarry Smith + dm - The `DM`
4510bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout
4511bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout
4512507e4973SMatthew G. Knepley 
4513507e4973SMatthew G. Knepley   Level: intermediate
4514507e4973SMatthew G. Knepley 
45151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`
4516507e4973SMatthew G. Knepley */
4517d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(DM dm, PetscSection localSection, PetscSection globalSection)
4518d71ae5a4SJacob Faibussowitsch {
4519507e4973SMatthew G. Knepley   MPI_Comm        comm;
4520507e4973SMatthew G. Knepley   PetscLayout     layout;
4521507e4973SMatthew G. Knepley   const PetscInt *ranges;
4522507e4973SMatthew G. Knepley   PetscInt        pStart, pEnd, p, nroots;
4523507e4973SMatthew G. Knepley   PetscMPIInt     size, rank;
4524507e4973SMatthew G. Knepley   PetscBool       valid = PETSC_TRUE, gvalid;
4525507e4973SMatthew G. Knepley 
4526507e4973SMatthew G. Knepley   PetscFunctionBegin;
45279566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
4528507e4973SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
45299566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
45309566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
45319566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(globalSection, &pStart, &pEnd));
45329566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &nroots));
45339566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &layout));
45349566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(layout, 1));
45359566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(layout, nroots));
45369566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(layout));
45379566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(layout, &ranges));
4538507e4973SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
4539f741bcd2SMatthew G. Knepley     PetscInt dof, cdof, off, gdof, gcdof, goff, gsize, d;
4540507e4973SMatthew G. Knepley 
45419566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(localSection, p, &dof));
45429566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(localSection, p, &off));
45439566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetConstraintDof(localSection, p, &cdof));
45449566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(globalSection, p, &gdof));
45459566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetConstraintDof(globalSection, p, &gcdof));
45469566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(globalSection, p, &goff));
4547507e4973SMatthew G. Knepley     if (!gdof) continue; /* Censored point */
45489371c9d4SSatish Balay     if ((gdof < 0 ? -(gdof + 1) : gdof) != dof) {
45499371c9d4SSatish Balay       PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local dof %" PetscInt_FMT "\n", rank, gdof, p, dof));
45509371c9d4SSatish Balay       valid = PETSC_FALSE;
45519371c9d4SSatish Balay     }
45529371c9d4SSatish Balay     if (gcdof && (gcdof != cdof)) {
45539371c9d4SSatish Balay       PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global constraints %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local constraints %" PetscInt_FMT "\n", rank, gcdof, p, cdof));
45549371c9d4SSatish Balay       valid = PETSC_FALSE;
45559371c9d4SSatish Balay     }
4556507e4973SMatthew G. Knepley     if (gdof < 0) {
4557507e4973SMatthew G. Knepley       gsize = gdof < 0 ? -(gdof + 1) - gcdof : gdof - gcdof;
4558507e4973SMatthew G. Knepley       for (d = 0; d < gsize; ++d) {
4559507e4973SMatthew G. Knepley         PetscInt offset = -(goff + 1) + d, r;
4560507e4973SMatthew G. Knepley 
45619566063dSJacob Faibussowitsch         PetscCall(PetscFindInt(offset, size + 1, ranges, &r));
4562507e4973SMatthew G. Knepley         if (r < 0) r = -(r + 2);
45639371c9d4SSatish Balay         if ((r < 0) || (r >= size)) {
45649371c9d4SSatish Balay           PetscCall(PetscSynchronizedPrintf(comm, "[%d]Point %" PetscInt_FMT " mapped to invalid process %" PetscInt_FMT " (%" PetscInt_FMT ", %" PetscInt_FMT ")\n", rank, p, r, gdof, goff));
45659371c9d4SSatish Balay           valid = PETSC_FALSE;
45669371c9d4SSatish Balay           break;
45679371c9d4SSatish Balay         }
4568507e4973SMatthew G. Knepley       }
4569507e4973SMatthew G. Knepley     }
4570507e4973SMatthew G. Knepley   }
45719566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&layout));
45729566063dSJacob Faibussowitsch   PetscCall(PetscSynchronizedFlush(comm, NULL));
45731c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&valid, &gvalid, 1, MPIU_BOOL, MPI_LAND, comm));
4574507e4973SMatthew G. Knepley   if (!gvalid) {
45759566063dSJacob Faibussowitsch     PetscCall(DMView(dm, NULL));
4576507e4973SMatthew G. Knepley     SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Inconsistent local and global sections");
4577507e4973SMatthew G. Knepley   }
45783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4579507e4973SMatthew G. Knepley }
4580f741bcd2SMatthew G. Knepley #endif
4581507e4973SMatthew G. Knepley 
45825f06a3ddSJed Brown static PetscErrorCode DMGetIsoperiodicPointSF_Internal(DM dm, PetscSF *sf)
45836725e60dSJed Brown {
45846725e60dSJed Brown   PetscErrorCode (*f)(DM, PetscSF *);
45854d86920dSPierre Jolivet 
45866725e60dSJed Brown   PetscFunctionBegin;
45876725e60dSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
45884f572ea9SToby Isaac   PetscAssertPointer(sf, 2);
45895f06a3ddSJed Brown   PetscCall(PetscObjectQueryFunction((PetscObject)dm, "DMGetIsoperiodicPointSF_C", &f));
45906725e60dSJed Brown   if (f) PetscCall(f(dm, sf));
45916725e60dSJed Brown   else *sf = dm->sf;
45923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
45936725e60dSJed Brown }
45946725e60dSJed Brown 
459588ed4aceSMatthew G Knepley /*@
4596bb7acecfSBarry Smith   DMGetGlobalSection - Get the `PetscSection` encoding the global data layout for the `DM`.
459788ed4aceSMatthew G Knepley 
459820f4b53cSBarry Smith   Collective
45998b1ab98fSJed Brown 
460088ed4aceSMatthew G Knepley   Input Parameter:
4601bb7acecfSBarry Smith . dm - The `DM`
460288ed4aceSMatthew G Knepley 
460388ed4aceSMatthew G Knepley   Output Parameter:
4604bb7acecfSBarry Smith . section - The `PetscSection`
460588ed4aceSMatthew G Knepley 
460688ed4aceSMatthew G Knepley   Level: intermediate
460788ed4aceSMatthew G Knepley 
4608bb7acecfSBarry Smith   Note:
4609bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
461088ed4aceSMatthew G Knepley 
46111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()`
461288ed4aceSMatthew G Knepley @*/
4613d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetGlobalSection(DM dm, PetscSection *section)
4614d71ae5a4SJacob Faibussowitsch {
461588ed4aceSMatthew G Knepley   PetscFunctionBegin;
461688ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
46174f572ea9SToby Isaac   PetscAssertPointer(section, 2);
46181bb6d2a8SBarry Smith   if (!dm->globalSection) {
4619fd59a867SMatthew G. Knepley     PetscSection s;
46206725e60dSJed Brown     PetscSF      sf;
4621fd59a867SMatthew G. Knepley 
46229566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &s));
46237a8be351SBarry Smith     PetscCheck(s, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a default PetscSection in order to create a global PetscSection");
46247a8be351SBarry Smith     PetscCheck(dm->sf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a point PetscSF in order to create a global PetscSection");
46255f06a3ddSJed Brown     PetscCall(DMGetIsoperiodicPointSF_Internal(dm, &sf));
4626eb9d3e4dSMatthew G. Knepley     PetscCall(PetscSectionCreateGlobalSection(s, sf, PETSC_TRUE, PETSC_FALSE, PETSC_FALSE, &dm->globalSection));
46279566063dSJacob Faibussowitsch     PetscCall(PetscLayoutDestroy(&dm->map));
46289566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetValueLayout(PetscObjectComm((PetscObject)dm), dm->globalSection, &dm->map));
46299566063dSJacob Faibussowitsch     PetscCall(PetscSectionViewFromOptions(dm->globalSection, NULL, "-global_section_view"));
463088ed4aceSMatthew G Knepley   }
46311bb6d2a8SBarry Smith   *section = dm->globalSection;
46323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
463388ed4aceSMatthew G Knepley }
463488ed4aceSMatthew G Knepley 
4635b21d0597SMatthew G Knepley /*@
4636bb7acecfSBarry Smith   DMSetGlobalSection - Set the `PetscSection` encoding the global data layout for the `DM`.
4637b21d0597SMatthew G Knepley 
4638b21d0597SMatthew G Knepley   Input Parameters:
4639bb7acecfSBarry Smith + dm      - The `DM`
46402fe279fdSBarry Smith - section - The PetscSection, or `NULL`
4641b21d0597SMatthew G Knepley 
4642b21d0597SMatthew G Knepley   Level: intermediate
4643b21d0597SMatthew G Knepley 
4644bb7acecfSBarry Smith   Note:
4645bb7acecfSBarry Smith   Any existing `PetscSection` will be destroyed
4646b21d0597SMatthew G Knepley 
46471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetGlobalSection()`, `DMSetLocalSection()`
4648b21d0597SMatthew G Knepley @*/
4649d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetGlobalSection(DM dm, PetscSection section)
4650d71ae5a4SJacob Faibussowitsch {
4651b21d0597SMatthew G Knepley   PetscFunctionBegin;
4652b21d0597SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
46535080bbdbSMatthew G Knepley   if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
46549566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)section));
46559566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->globalSection));
46561bb6d2a8SBarry Smith   dm->globalSection = section;
4657497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG)
46589566063dSJacob Faibussowitsch   if (section) PetscCall(DMDefaultSectionCheckConsistency_Internal(dm, dm->localSection, section));
4659507e4973SMatthew G. Knepley #endif
466050350c8eSStefano Zampini   /* Clear global scratch vectors and sectionSF */
466150350c8eSStefano Zampini   PetscCall(PetscSFDestroy(&dm->sectionSF));
466252947b74SStefano Zampini   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF));
466350350c8eSStefano Zampini   PetscCall(DMClearGlobalVectors(dm));
466450350c8eSStefano Zampini   PetscCall(DMClearNamedGlobalVectors(dm));
46653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4666b21d0597SMatthew G Knepley }
4667b21d0597SMatthew G Knepley 
466888ed4aceSMatthew G Knepley /*@
4669bb7acecfSBarry Smith   DMGetSectionSF - Get the `PetscSF` encoding the parallel dof overlap for the `DM`. If it has not been set,
4670bb7acecfSBarry Smith   it is created from the default `PetscSection` layouts in the `DM`.
467188ed4aceSMatthew G Knepley 
467288ed4aceSMatthew G Knepley   Input Parameter:
4673bb7acecfSBarry Smith . dm - The `DM`
467488ed4aceSMatthew G Knepley 
467588ed4aceSMatthew G Knepley   Output Parameter:
4676bb7acecfSBarry Smith . sf - The `PetscSF`
467788ed4aceSMatthew G Knepley 
467888ed4aceSMatthew G Knepley   Level: intermediate
467988ed4aceSMatthew G Knepley 
4680bb7acecfSBarry Smith   Note:
4681bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
468288ed4aceSMatthew G Knepley 
46831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetSectionSF()`, `DMCreateSectionSF()`
468488ed4aceSMatthew G Knepley @*/
4685d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSectionSF(DM dm, PetscSF *sf)
4686d71ae5a4SJacob Faibussowitsch {
468788ed4aceSMatthew G Knepley   PetscInt nroots;
468888ed4aceSMatthew G Knepley 
468988ed4aceSMatthew G Knepley   PetscFunctionBegin;
469088ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
46914f572ea9SToby Isaac   PetscAssertPointer(sf, 2);
469248a46eb9SPierre Jolivet   if (!dm->sectionSF) PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF));
46939566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(dm->sectionSF, &nroots, NULL, NULL, NULL));
469488ed4aceSMatthew G Knepley   if (nroots < 0) {
469588ed4aceSMatthew G Knepley     PetscSection section, gSection;
469688ed4aceSMatthew G Knepley 
46979566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
469831ea6d37SMatthew G Knepley     if (section) {
46999566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalSection(dm, &gSection));
47009566063dSJacob Faibussowitsch       PetscCall(DMCreateSectionSF(dm, section, gSection));
470131ea6d37SMatthew G Knepley     } else {
47020298fd71SBarry Smith       *sf = NULL;
47033ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
470431ea6d37SMatthew G Knepley     }
470588ed4aceSMatthew G Knepley   }
47061bb6d2a8SBarry Smith   *sf = dm->sectionSF;
47073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
470888ed4aceSMatthew G Knepley }
470988ed4aceSMatthew G Knepley 
471088ed4aceSMatthew G Knepley /*@
4711bb7acecfSBarry Smith   DMSetSectionSF - Set the `PetscSF` encoding the parallel dof overlap for the `DM`
471288ed4aceSMatthew G Knepley 
471388ed4aceSMatthew G Knepley   Input Parameters:
4714bb7acecfSBarry Smith + dm - The `DM`
4715bb7acecfSBarry Smith - sf - The `PetscSF`
471688ed4aceSMatthew G Knepley 
471788ed4aceSMatthew G Knepley   Level: intermediate
471888ed4aceSMatthew G Knepley 
4719bb7acecfSBarry Smith   Note:
4720bb7acecfSBarry Smith   Any previous `PetscSF` is destroyed
472188ed4aceSMatthew G Knepley 
47221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMCreateSectionSF()`
472388ed4aceSMatthew G Knepley @*/
4724d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSectionSF(DM dm, PetscSF sf)
4725d71ae5a4SJacob Faibussowitsch {
472688ed4aceSMatthew G Knepley   PetscFunctionBegin;
472788ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4728b9d85ea2SLisandro Dalcin   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
47299566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)sf));
47309566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&dm->sectionSF));
47311bb6d2a8SBarry Smith   dm->sectionSF = sf;
47323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
473388ed4aceSMatthew G Knepley }
473488ed4aceSMatthew G Knepley 
473588ed4aceSMatthew G Knepley /*@C
4736bb7acecfSBarry Smith   DMCreateSectionSF - Create the `PetscSF` encoding the parallel dof overlap for the `DM` based upon the `PetscSection`s
473788ed4aceSMatthew G Knepley   describing the data layout.
473888ed4aceSMatthew G Knepley 
473988ed4aceSMatthew G Knepley   Input Parameters:
4740bb7acecfSBarry Smith + dm            - The `DM`
4741bb7acecfSBarry Smith . localSection  - `PetscSection` describing the local data layout
4742bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout
474388ed4aceSMatthew G Knepley 
47441bb6d2a8SBarry Smith   Level: developer
47451bb6d2a8SBarry Smith 
4746bb7acecfSBarry Smith   Note:
4747bb7acecfSBarry Smith   One usually uses `DMGetSectionSF()` to obtain the `PetscSF`
4748bb7acecfSBarry Smith 
474973ff1848SBarry Smith   Developer Note:
4750bb7acecfSBarry Smith   Since this routine has for arguments the two sections from the `DM` and puts the resulting `PetscSF`
4751bb7acecfSBarry Smith   directly into the `DM`, perhaps this function should not take the local and global sections as
4752bb7acecfSBarry Smith   input and should just obtain them from the `DM`?
47531bb6d2a8SBarry Smith 
47541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMGetLocalSection()`, `DMGetGlobalSection()`
475588ed4aceSMatthew G Knepley @*/
4756d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSectionSF(DM dm, PetscSection localSection, PetscSection globalSection)
4757d71ae5a4SJacob Faibussowitsch {
475888ed4aceSMatthew G Knepley   PetscFunctionBegin;
475988ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
47609566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphSection(dm->sectionSF, localSection, globalSection));
47613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
476288ed4aceSMatthew G Knepley }
4763af122d2aSMatthew G Knepley 
4764b21d0597SMatthew G Knepley /*@
4765bb7acecfSBarry Smith   DMGetPointSF - Get the `PetscSF` encoding the parallel section point overlap for the `DM`.
4766bb7acecfSBarry Smith 
4767bb7acecfSBarry Smith   Not collective but the resulting `PetscSF` is collective
4768b21d0597SMatthew G Knepley 
4769b21d0597SMatthew G Knepley   Input Parameter:
4770bb7acecfSBarry Smith . dm - The `DM`
4771b21d0597SMatthew G Knepley 
4772b21d0597SMatthew G Knepley   Output Parameter:
4773bb7acecfSBarry Smith . sf - The `PetscSF`
4774b21d0597SMatthew G Knepley 
4775b21d0597SMatthew G Knepley   Level: intermediate
4776b21d0597SMatthew G Knepley 
4777bb7acecfSBarry Smith   Note:
4778bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
4779b21d0597SMatthew G Knepley 
47801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()`
4781b21d0597SMatthew G Knepley @*/
4782d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetPointSF(DM dm, PetscSF *sf)
4783d71ae5a4SJacob Faibussowitsch {
4784b21d0597SMatthew G Knepley   PetscFunctionBegin;
4785b21d0597SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
47864f572ea9SToby Isaac   PetscAssertPointer(sf, 2);
4787b21d0597SMatthew G Knepley   *sf = dm->sf;
47883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4789b21d0597SMatthew G Knepley }
4790b21d0597SMatthew G Knepley 
4791057b4bcdSMatthew G Knepley /*@
4792bb7acecfSBarry Smith   DMSetPointSF - Set the `PetscSF` encoding the parallel section point overlap for the `DM`.
4793bb7acecfSBarry Smith 
479420f4b53cSBarry Smith   Collective
4795057b4bcdSMatthew G Knepley 
4796057b4bcdSMatthew G Knepley   Input Parameters:
4797bb7acecfSBarry Smith + dm - The `DM`
4798bb7acecfSBarry Smith - sf - The `PetscSF`
4799057b4bcdSMatthew G Knepley 
4800057b4bcdSMatthew G Knepley   Level: intermediate
4801057b4bcdSMatthew G Knepley 
48021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()`
4803057b4bcdSMatthew G Knepley @*/
4804d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetPointSF(DM dm, PetscSF sf)
4805d71ae5a4SJacob Faibussowitsch {
4806057b4bcdSMatthew G Knepley   PetscFunctionBegin;
4807057b4bcdSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4808b9d85ea2SLisandro Dalcin   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
48099566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)sf));
48109566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&dm->sf));
4811057b4bcdSMatthew G Knepley   dm->sf = sf;
48123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4813057b4bcdSMatthew G Knepley }
4814057b4bcdSMatthew G Knepley 
48154f37162bSMatthew G. Knepley /*@
4816bb7acecfSBarry Smith   DMGetNaturalSF - Get the `PetscSF` encoding the map back to the original mesh ordering
48174f37162bSMatthew G. Knepley 
48184f37162bSMatthew G. Knepley   Input Parameter:
4819bb7acecfSBarry Smith . dm - The `DM`
48204f37162bSMatthew G. Knepley 
48214f37162bSMatthew G. Knepley   Output Parameter:
4822bb7acecfSBarry Smith . sf - The `PetscSF`
48234f37162bSMatthew G. Knepley 
48244f37162bSMatthew G. Knepley   Level: intermediate
48254f37162bSMatthew G. Knepley 
4826bb7acecfSBarry Smith   Note:
4827bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
48284f37162bSMatthew G. Knepley 
48291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()`
48304f37162bSMatthew G. Knepley @*/
4831d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNaturalSF(DM dm, PetscSF *sf)
4832d71ae5a4SJacob Faibussowitsch {
48334f37162bSMatthew G. Knepley   PetscFunctionBegin;
48344f37162bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
48354f572ea9SToby Isaac   PetscAssertPointer(sf, 2);
48364f37162bSMatthew G. Knepley   *sf = dm->sfNatural;
48373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48384f37162bSMatthew G. Knepley }
48394f37162bSMatthew G. Knepley 
48404f37162bSMatthew G. Knepley /*@
48414f37162bSMatthew G. Knepley   DMSetNaturalSF - Set the PetscSF encoding the map back to the original mesh ordering
48424f37162bSMatthew G. Knepley 
48434f37162bSMatthew G. Knepley   Input Parameters:
48444f37162bSMatthew G. Knepley + dm - The DM
48454f37162bSMatthew G. Knepley - sf - The PetscSF
48464f37162bSMatthew G. Knepley 
48474f37162bSMatthew G. Knepley   Level: intermediate
48484f37162bSMatthew G. Knepley 
48491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()`
48504f37162bSMatthew G. Knepley @*/
4851d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNaturalSF(DM dm, PetscSF sf)
4852d71ae5a4SJacob Faibussowitsch {
48534f37162bSMatthew G. Knepley   PetscFunctionBegin;
48544f37162bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
48554f37162bSMatthew G. Knepley   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
48569566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)sf));
48579566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&dm->sfNatural));
48584f37162bSMatthew G. Knepley   dm->sfNatural = sf;
48593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48604f37162bSMatthew G. Knepley }
48614f37162bSMatthew G. Knepley 
4862d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetDefaultAdjacency_Private(DM dm, PetscInt f, PetscObject disc)
4863d71ae5a4SJacob Faibussowitsch {
486434aa8a36SMatthew G. Knepley   PetscClassId id;
486534aa8a36SMatthew G. Knepley 
486634aa8a36SMatthew G. Knepley   PetscFunctionBegin;
48679566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetClassId(disc, &id));
486834aa8a36SMatthew G. Knepley   if (id == PETSCFE_CLASSID) {
48699566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE));
487034aa8a36SMatthew G. Knepley   } else if (id == PETSCFV_CLASSID) {
48719566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, f, PETSC_TRUE, PETSC_FALSE));
487217c1d62eSMatthew G. Knepley   } else {
48739566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE));
487434aa8a36SMatthew G. Knepley   }
48753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
487634aa8a36SMatthew G. Knepley }
487734aa8a36SMatthew G. Knepley 
4878d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFieldEnlarge_Static(DM dm, PetscInt NfNew)
4879d71ae5a4SJacob Faibussowitsch {
488044a7f3ddSMatthew G. Knepley   RegionField *tmpr;
488144a7f3ddSMatthew G. Knepley   PetscInt     Nf = dm->Nf, f;
488244a7f3ddSMatthew G. Knepley 
488344a7f3ddSMatthew G. Knepley   PetscFunctionBegin;
48843ba16761SJacob Faibussowitsch   if (Nf >= NfNew) PetscFunctionReturn(PETSC_SUCCESS);
48859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(NfNew, &tmpr));
488644a7f3ddSMatthew G. Knepley   for (f = 0; f < Nf; ++f) tmpr[f] = dm->fields[f];
48879371c9d4SSatish Balay   for (f = Nf; f < NfNew; ++f) {
48889371c9d4SSatish Balay     tmpr[f].disc        = NULL;
48899371c9d4SSatish Balay     tmpr[f].label       = NULL;
48909371c9d4SSatish Balay     tmpr[f].avoidTensor = PETSC_FALSE;
48919371c9d4SSatish Balay   }
48929566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->fields));
489344a7f3ddSMatthew G. Knepley   dm->Nf     = NfNew;
489444a7f3ddSMatthew G. Knepley   dm->fields = tmpr;
48953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
489644a7f3ddSMatthew G. Knepley }
489744a7f3ddSMatthew G. Knepley 
489844a7f3ddSMatthew G. Knepley /*@
489920f4b53cSBarry Smith   DMClearFields - Remove all fields from the `DM`
490044a7f3ddSMatthew G. Knepley 
490120f4b53cSBarry Smith   Logically Collective
490244a7f3ddSMatthew G. Knepley 
490344a7f3ddSMatthew G. Knepley   Input Parameter:
490420f4b53cSBarry Smith . dm - The `DM`
490544a7f3ddSMatthew G. Knepley 
490644a7f3ddSMatthew G. Knepley   Level: intermediate
490744a7f3ddSMatthew G. Knepley 
49081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetNumFields()`, `DMSetField()`
490944a7f3ddSMatthew G. Knepley @*/
4910d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearFields(DM dm)
4911d71ae5a4SJacob Faibussowitsch {
491244a7f3ddSMatthew G. Knepley   PetscInt f;
491344a7f3ddSMatthew G. Knepley 
491444a7f3ddSMatthew G. Knepley   PetscFunctionBegin;
491544a7f3ddSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
491644a7f3ddSMatthew G. Knepley   for (f = 0; f < dm->Nf; ++f) {
49179566063dSJacob Faibussowitsch     PetscCall(PetscObjectDestroy(&dm->fields[f].disc));
49189566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&dm->fields[f].label));
491944a7f3ddSMatthew G. Knepley   }
49209566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->fields));
492144a7f3ddSMatthew G. Knepley   dm->fields = NULL;
492244a7f3ddSMatthew G. Knepley   dm->Nf     = 0;
49233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
492444a7f3ddSMatthew G. Knepley }
492544a7f3ddSMatthew G. Knepley 
4926689b5837SMatthew G. Knepley /*@
492720f4b53cSBarry Smith   DMGetNumFields - Get the number of fields in the `DM`
4928689b5837SMatthew G. Knepley 
492920f4b53cSBarry Smith   Not Collective
4930689b5837SMatthew G. Knepley 
4931689b5837SMatthew G. Knepley   Input Parameter:
493220f4b53cSBarry Smith . dm - The `DM`
4933689b5837SMatthew G. Knepley 
4934689b5837SMatthew G. Knepley   Output Parameter:
493560225df5SJacob Faibussowitsch . numFields - The number of fields
4936689b5837SMatthew G. Knepley 
4937689b5837SMatthew G. Knepley   Level: intermediate
4938689b5837SMatthew G. Knepley 
49391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNumFields()`, `DMSetField()`
4940689b5837SMatthew G. Knepley @*/
4941d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumFields(DM dm, PetscInt *numFields)
4942d71ae5a4SJacob Faibussowitsch {
49430f21e855SMatthew G. Knepley   PetscFunctionBegin;
49440f21e855SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
49454f572ea9SToby Isaac   PetscAssertPointer(numFields, 2);
494644a7f3ddSMatthew G. Knepley   *numFields = dm->Nf;
49473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4948af122d2aSMatthew G Knepley }
4949af122d2aSMatthew G Knepley 
4950689b5837SMatthew G. Knepley /*@
495120f4b53cSBarry Smith   DMSetNumFields - Set the number of fields in the `DM`
4952689b5837SMatthew G. Knepley 
495320f4b53cSBarry Smith   Logically Collective
4954689b5837SMatthew G. Knepley 
4955689b5837SMatthew G. Knepley   Input Parameters:
495620f4b53cSBarry Smith + dm        - The `DM`
495760225df5SJacob Faibussowitsch - numFields - The number of fields
4958689b5837SMatthew G. Knepley 
4959689b5837SMatthew G. Knepley   Level: intermediate
4960689b5837SMatthew G. Knepley 
49611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetField()`
4962689b5837SMatthew G. Knepley @*/
4963d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNumFields(DM dm, PetscInt numFields)
4964d71ae5a4SJacob Faibussowitsch {
49650f21e855SMatthew G. Knepley   PetscInt Nf, f;
4966af122d2aSMatthew G Knepley 
4967af122d2aSMatthew G Knepley   PetscFunctionBegin;
4968af122d2aSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
49699566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
49700f21e855SMatthew G. Knepley   for (f = Nf; f < numFields; ++f) {
49710f21e855SMatthew G. Knepley     PetscContainer obj;
49720f21e855SMatthew G. Knepley 
49739566063dSJacob Faibussowitsch     PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject)dm), &obj));
49749566063dSJacob Faibussowitsch     PetscCall(DMAddField(dm, NULL, (PetscObject)obj));
49759566063dSJacob Faibussowitsch     PetscCall(PetscContainerDestroy(&obj));
4976af122d2aSMatthew G Knepley   }
49773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4978af122d2aSMatthew G Knepley }
4979af122d2aSMatthew G Knepley 
4980c1929be8SMatthew G. Knepley /*@
4981bb7acecfSBarry Smith   DMGetField - Return the `DMLabel` and discretization object for a given `DM` field
4982c1929be8SMatthew G. Knepley 
498320f4b53cSBarry Smith   Not Collective
4984c1929be8SMatthew G. Knepley 
4985c1929be8SMatthew G. Knepley   Input Parameters:
4986bb7acecfSBarry Smith + dm - The `DM`
4987c1929be8SMatthew G. Knepley - f  - The field number
4988c1929be8SMatthew G. Knepley 
498944a7f3ddSMatthew G. Knepley   Output Parameters:
499020f4b53cSBarry Smith + label - The label indicating the support of the field, or `NULL` for the entire mesh (pass in `NULL` if not needed)
499120f4b53cSBarry Smith - disc  - The discretization object (pass in `NULL` if not needed)
4992c1929be8SMatthew G. Knepley 
499344a7f3ddSMatthew G. Knepley   Level: intermediate
4994c1929be8SMatthew G. Knepley 
49951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`
4996c1929be8SMatthew G. Knepley @*/
4997d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetField(DM dm, PetscInt f, DMLabel *label, PetscObject *disc)
4998d71ae5a4SJacob Faibussowitsch {
4999af122d2aSMatthew G Knepley   PetscFunctionBegin;
5000af122d2aSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
50014f572ea9SToby Isaac   PetscAssertPointer(disc, 4);
50027a8be351SBarry Smith   PetscCheck((f >= 0) && (f < dm->Nf), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, dm->Nf);
500344a7f3ddSMatthew G. Knepley   if (label) *label = dm->fields[f].label;
5004bb7acecfSBarry Smith   if (disc) *disc = dm->fields[f].disc;
50053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5006decb47aaSMatthew G. Knepley }
5007decb47aaSMatthew G. Knepley 
5008083401c6SMatthew G. Knepley /* Does not clear the DS */
5009d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField_Internal(DM dm, PetscInt f, DMLabel label, PetscObject disc)
5010d71ae5a4SJacob Faibussowitsch {
5011083401c6SMatthew G. Knepley   PetscFunctionBegin;
50129566063dSJacob Faibussowitsch   PetscCall(DMFieldEnlarge_Static(dm, f + 1));
50139566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&dm->fields[f].label));
50149566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&dm->fields[f].disc));
5015083401c6SMatthew G. Knepley   dm->fields[f].label = label;
5016bb7acecfSBarry Smith   dm->fields[f].disc  = disc;
50179566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
5018bb7acecfSBarry Smith   PetscCall(PetscObjectReference((PetscObject)disc));
50193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5020083401c6SMatthew G. Knepley }
5021083401c6SMatthew G. Knepley 
502246560f82SMatthew G. Knepley /*@C
5023bb7acecfSBarry Smith   DMSetField - Set the discretization object for a given `DM` field. Usually one would call `DMAddField()` which automatically handles
5024bb7acecfSBarry Smith   the field numbering.
5025c1929be8SMatthew G. Knepley 
502620f4b53cSBarry Smith   Logically Collective
5027c1929be8SMatthew G. Knepley 
5028c1929be8SMatthew G. Knepley   Input Parameters:
5029bb7acecfSBarry Smith + dm    - The `DM`
5030c1929be8SMatthew G. Knepley . f     - The field number
503120f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh
5032bb7acecfSBarry Smith - disc  - The discretization object
5033c1929be8SMatthew G. Knepley 
503444a7f3ddSMatthew G. Knepley   Level: intermediate
5035c1929be8SMatthew G. Knepley 
50361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`
5037c1929be8SMatthew G. Knepley @*/
5038d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField(DM dm, PetscInt f, DMLabel label, PetscObject disc)
5039d71ae5a4SJacob Faibussowitsch {
5040decb47aaSMatthew G. Knepley   PetscFunctionBegin;
5041decb47aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5042e5e52638SMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3);
5043bb7acecfSBarry Smith   PetscValidHeader(disc, 4);
50447a8be351SBarry Smith   PetscCheck(f >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be non-negative", f);
5045bb7acecfSBarry Smith   PetscCall(DMSetField_Internal(dm, f, label, disc));
5046bb7acecfSBarry Smith   PetscCall(DMSetDefaultAdjacency_Private(dm, f, disc));
50479566063dSJacob Faibussowitsch   PetscCall(DMClearDS(dm));
50483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
504944a7f3ddSMatthew G. Knepley }
505044a7f3ddSMatthew G. Knepley 
505146560f82SMatthew G. Knepley /*@C
5052bb7acecfSBarry Smith   DMAddField - Add a field to a `DM` object. A field is a function space defined by of a set of discretization points (geometric entities)
5053bb7acecfSBarry Smith   and a discretization object that defines the function space associated with those points.
505444a7f3ddSMatthew G. Knepley 
505520f4b53cSBarry Smith   Logically Collective
505644a7f3ddSMatthew G. Knepley 
505744a7f3ddSMatthew G. Knepley   Input Parameters:
5058bb7acecfSBarry Smith + dm    - The `DM`
505920f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh
5060bb7acecfSBarry Smith - disc  - The discretization object
506144a7f3ddSMatthew G. Knepley 
506244a7f3ddSMatthew G. Knepley   Level: intermediate
506344a7f3ddSMatthew G. Knepley 
5064bb7acecfSBarry Smith   Notes:
5065bb7acecfSBarry Smith   The label already exists or will be added to the `DM` with `DMSetLabel()`.
5066bb7acecfSBarry Smith 
5067da81f932SPierre Jolivet   For example, a piecewise continuous pressure field can be defined by coefficients at the cell centers of a mesh and piecewise constant functions
5068bb7acecfSBarry Smith   within each cell. Thus a specific function in the space is defined by the combination of a `Vec` containing the coefficients, a `DM` defining the
5069bb7acecfSBarry Smith   geometry entities, a `DMLabel` indicating a subset of those geometric entities, and a discretization object, such as a `PetscFE`.
5070bb7acecfSBarry Smith 
50711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLabel()`, `DMSetField()`, `DMGetField()`, `PetscFE`
507244a7f3ddSMatthew G. Knepley @*/
5073d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddField(DM dm, DMLabel label, PetscObject disc)
5074d71ae5a4SJacob Faibussowitsch {
507544a7f3ddSMatthew G. Knepley   PetscInt Nf = dm->Nf;
507644a7f3ddSMatthew G. Knepley 
507744a7f3ddSMatthew G. Knepley   PetscFunctionBegin;
507844a7f3ddSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5079064a246eSJacob Faibussowitsch   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
5080bb7acecfSBarry Smith   PetscValidHeader(disc, 3);
50819566063dSJacob Faibussowitsch   PetscCall(DMFieldEnlarge_Static(dm, Nf + 1));
508244a7f3ddSMatthew G. Knepley   dm->fields[Nf].label = label;
5083bb7acecfSBarry Smith   dm->fields[Nf].disc  = disc;
50849566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
5085bb7acecfSBarry Smith   PetscCall(PetscObjectReference((PetscObject)disc));
5086bb7acecfSBarry Smith   PetscCall(DMSetDefaultAdjacency_Private(dm, Nf, disc));
50879566063dSJacob Faibussowitsch   PetscCall(DMClearDS(dm));
50883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5089af122d2aSMatthew G Knepley }
50906636e97aSMatthew G Knepley 
5091e5e52638SMatthew G. Knepley /*@
5092e0b68406SMatthew Knepley   DMSetFieldAvoidTensor - Set flag to avoid defining the field on tensor cells
5093e0b68406SMatthew Knepley 
509420f4b53cSBarry Smith   Logically Collective
5095e0b68406SMatthew Knepley 
5096e0b68406SMatthew Knepley   Input Parameters:
5097bb7acecfSBarry Smith + dm          - The `DM`
5098e0b68406SMatthew Knepley . f           - The field index
5099bb7acecfSBarry Smith - avoidTensor - `PETSC_TRUE` to skip defining the field on tensor cells
5100e0b68406SMatthew Knepley 
5101e0b68406SMatthew Knepley   Level: intermediate
5102e0b68406SMatthew Knepley 
51031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()`
5104e0b68406SMatthew Knepley @*/
5105d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFieldAvoidTensor(DM dm, PetscInt f, PetscBool avoidTensor)
5106d71ae5a4SJacob Faibussowitsch {
5107e0b68406SMatthew Knepley   PetscFunctionBegin;
510863a3b9bcSJacob Faibussowitsch   PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf);
5109e0b68406SMatthew Knepley   dm->fields[f].avoidTensor = avoidTensor;
51103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5111e0b68406SMatthew Knepley }
5112e0b68406SMatthew Knepley 
5113e0b68406SMatthew Knepley /*@
5114e0b68406SMatthew Knepley   DMGetFieldAvoidTensor - Get flag to avoid defining the field on tensor cells
5115e0b68406SMatthew Knepley 
511620f4b53cSBarry Smith   Not Collective
5117e0b68406SMatthew Knepley 
5118e0b68406SMatthew Knepley   Input Parameters:
5119bb7acecfSBarry Smith + dm - The `DM`
5120e0b68406SMatthew Knepley - f  - The field index
5121e0b68406SMatthew Knepley 
5122e0b68406SMatthew Knepley   Output Parameter:
5123e0b68406SMatthew Knepley . avoidTensor - The flag to avoid defining the field on tensor cells
5124e0b68406SMatthew Knepley 
5125e0b68406SMatthew Knepley   Level: intermediate
5126e0b68406SMatthew Knepley 
512760225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`, `DMGetField()`, `DMSetFieldAvoidTensor()`
5128e0b68406SMatthew Knepley @*/
5129d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFieldAvoidTensor(DM dm, PetscInt f, PetscBool *avoidTensor)
5130d71ae5a4SJacob Faibussowitsch {
5131e0b68406SMatthew Knepley   PetscFunctionBegin;
513263a3b9bcSJacob Faibussowitsch   PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf);
5133e0b68406SMatthew Knepley   *avoidTensor = dm->fields[f].avoidTensor;
51343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5135e0b68406SMatthew Knepley }
5136e0b68406SMatthew Knepley 
5137e0b68406SMatthew Knepley /*@
5138bb7acecfSBarry Smith   DMCopyFields - Copy the discretizations for the `DM` into another `DM`
5139e5e52638SMatthew G. Knepley 
514020f4b53cSBarry Smith   Collective
5141e5e52638SMatthew G. Knepley 
5142e5e52638SMatthew G. Knepley   Input Parameter:
5143bb7acecfSBarry Smith . dm - The `DM`
5144e5e52638SMatthew G. Knepley 
5145e5e52638SMatthew G. Knepley   Output Parameter:
5146bb7acecfSBarry Smith . newdm - The `DM`
5147e5e52638SMatthew G. Knepley 
5148e5e52638SMatthew G. Knepley   Level: advanced
5149e5e52638SMatthew G. Knepley 
51501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetField()`, `DMSetField()`, `DMAddField()`, `DMCopyDS()`, `DMGetDS()`, `DMGetCellDS()`
5151e5e52638SMatthew G. Knepley @*/
5152d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyFields(DM dm, DM newdm)
5153d71ae5a4SJacob Faibussowitsch {
5154e5e52638SMatthew G. Knepley   PetscInt Nf, f;
5155e5e52638SMatthew G. Knepley 
5156e5e52638SMatthew G. Knepley   PetscFunctionBegin;
51573ba16761SJacob Faibussowitsch   if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS);
51589566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
51599566063dSJacob Faibussowitsch   PetscCall(DMClearFields(newdm));
5160e5e52638SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
5161e5e52638SMatthew G. Knepley     DMLabel     label;
5162e5e52638SMatthew G. Knepley     PetscObject field;
516334aa8a36SMatthew G. Knepley     PetscBool   useCone, useClosure;
5164e5e52638SMatthew G. Knepley 
51659566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, f, &label, &field));
51669566063dSJacob Faibussowitsch     PetscCall(DMSetField(newdm, f, label, field));
51679566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, f, &useCone, &useClosure));
51689566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(newdm, f, useCone, useClosure));
516934aa8a36SMatthew G. Knepley   }
51703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
517134aa8a36SMatthew G. Knepley }
517234aa8a36SMatthew G. Knepley 
517334aa8a36SMatthew G. Knepley /*@
517434aa8a36SMatthew G. Knepley   DMGetAdjacency - Returns the flags for determining variable influence
517534aa8a36SMatthew G. Knepley 
517620f4b53cSBarry Smith   Not Collective
517734aa8a36SMatthew G. Knepley 
517834aa8a36SMatthew G. Knepley   Input Parameters:
517920f4b53cSBarry Smith + dm - The `DM` object
518020f4b53cSBarry Smith - f  - The field number, or `PETSC_DEFAULT` for the default adjacency
518134aa8a36SMatthew G. Knepley 
5182d8d19677SJose E. Roman   Output Parameters:
518334aa8a36SMatthew G. Knepley + useCone    - Flag for variable influence starting with the cone operation
518434aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
518534aa8a36SMatthew G. Knepley 
518634aa8a36SMatthew G. Knepley   Level: developer
518734aa8a36SMatthew G. Knepley 
518820f4b53cSBarry Smith   Notes:
518920f4b53cSBarry Smith .vb
519020f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
519120f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
519220f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
519320f4b53cSBarry Smith .ve
519420f4b53cSBarry Smith   Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another.
519520f4b53cSBarry Smith 
51961cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetAdjacency()`, `DMGetField()`, `DMSetField()`
519734aa8a36SMatthew G. Knepley @*/
5198d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAdjacency(DM dm, PetscInt f, PetscBool *useCone, PetscBool *useClosure)
5199d71ae5a4SJacob Faibussowitsch {
520034aa8a36SMatthew G. Knepley   PetscFunctionBegin;
520134aa8a36SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
52024f572ea9SToby Isaac   if (useCone) PetscAssertPointer(useCone, 3);
52034f572ea9SToby Isaac   if (useClosure) PetscAssertPointer(useClosure, 4);
520434aa8a36SMatthew G. Knepley   if (f < 0) {
520534aa8a36SMatthew G. Knepley     if (useCone) *useCone = dm->adjacency[0];
520634aa8a36SMatthew G. Knepley     if (useClosure) *useClosure = dm->adjacency[1];
520734aa8a36SMatthew G. Knepley   } else {
520834aa8a36SMatthew G. Knepley     PetscInt Nf;
520934aa8a36SMatthew G. Knepley 
52109566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
52117a8be351SBarry Smith     PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf);
521234aa8a36SMatthew G. Knepley     if (useCone) *useCone = dm->fields[f].adjacency[0];
521334aa8a36SMatthew G. Knepley     if (useClosure) *useClosure = dm->fields[f].adjacency[1];
521434aa8a36SMatthew G. Knepley   }
52153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
521634aa8a36SMatthew G. Knepley }
521734aa8a36SMatthew G. Knepley 
521834aa8a36SMatthew G. Knepley /*@
521934aa8a36SMatthew G. Knepley   DMSetAdjacency - Set the flags for determining variable influence
522034aa8a36SMatthew G. Knepley 
522120f4b53cSBarry Smith   Not Collective
522234aa8a36SMatthew G. Knepley 
522334aa8a36SMatthew G. Knepley   Input Parameters:
522420f4b53cSBarry Smith + dm         - The `DM` object
522534aa8a36SMatthew G. Knepley . f          - The field number
522634aa8a36SMatthew G. Knepley . useCone    - Flag for variable influence starting with the cone operation
522734aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
522834aa8a36SMatthew G. Knepley 
522934aa8a36SMatthew G. Knepley   Level: developer
523034aa8a36SMatthew G. Knepley 
523120f4b53cSBarry Smith   Notes:
523220f4b53cSBarry Smith .vb
523320f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
523420f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
523520f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
523620f4b53cSBarry Smith .ve
523720f4b53cSBarry Smith   Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another.
523820f4b53cSBarry Smith 
52391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetAdjacency()`, `DMGetField()`, `DMSetField()`
524034aa8a36SMatthew G. Knepley @*/
5241d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAdjacency(DM dm, PetscInt f, PetscBool useCone, PetscBool useClosure)
5242d71ae5a4SJacob Faibussowitsch {
524334aa8a36SMatthew G. Knepley   PetscFunctionBegin;
524434aa8a36SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
524534aa8a36SMatthew G. Knepley   if (f < 0) {
524634aa8a36SMatthew G. Knepley     dm->adjacency[0] = useCone;
524734aa8a36SMatthew G. Knepley     dm->adjacency[1] = useClosure;
524834aa8a36SMatthew G. Knepley   } else {
524934aa8a36SMatthew G. Knepley     PetscInt Nf;
525034aa8a36SMatthew G. Knepley 
52519566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
52527a8be351SBarry Smith     PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf);
525334aa8a36SMatthew G. Knepley     dm->fields[f].adjacency[0] = useCone;
525434aa8a36SMatthew G. Knepley     dm->fields[f].adjacency[1] = useClosure;
5255e5e52638SMatthew G. Knepley   }
52563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5257e5e52638SMatthew G. Knepley }
5258e5e52638SMatthew G. Knepley 
5259b0441da4SMatthew G. Knepley /*@
5260b0441da4SMatthew G. Knepley   DMGetBasicAdjacency - Returns the flags for determining variable influence, using either the default or field 0 if it is defined
5261b0441da4SMatthew G. Knepley 
5262b0441da4SMatthew G. Knepley   Not collective
5263b0441da4SMatthew G. Knepley 
5264f899ff85SJose E. Roman   Input Parameter:
526520f4b53cSBarry Smith . dm - The `DM` object
5266b0441da4SMatthew G. Knepley 
5267d8d19677SJose E. Roman   Output Parameters:
5268b0441da4SMatthew G. Knepley + useCone    - Flag for variable influence starting with the cone operation
5269b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
5270b0441da4SMatthew G. Knepley 
5271b0441da4SMatthew G. Knepley   Level: developer
5272b0441da4SMatthew G. Knepley 
527320f4b53cSBarry Smith   Notes:
527420f4b53cSBarry Smith .vb
527520f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
527620f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
527720f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
527820f4b53cSBarry Smith .ve
527920f4b53cSBarry Smith 
52801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetBasicAdjacency()`, `DMGetField()`, `DMSetField()`
5281b0441da4SMatthew G. Knepley @*/
5282d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasicAdjacency(DM dm, PetscBool *useCone, PetscBool *useClosure)
5283d71ae5a4SJacob Faibussowitsch {
5284b0441da4SMatthew G. Knepley   PetscInt Nf;
5285b0441da4SMatthew G. Knepley 
5286b0441da4SMatthew G. Knepley   PetscFunctionBegin;
5287b0441da4SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
52884f572ea9SToby Isaac   if (useCone) PetscAssertPointer(useCone, 2);
52894f572ea9SToby Isaac   if (useClosure) PetscAssertPointer(useClosure, 3);
52909566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
5291b0441da4SMatthew G. Knepley   if (!Nf) {
52929566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure));
5293b0441da4SMatthew G. Knepley   } else {
52949566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, 0, useCone, useClosure));
5295b0441da4SMatthew G. Knepley   }
52963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5297b0441da4SMatthew G. Knepley }
5298b0441da4SMatthew G. Knepley 
5299b0441da4SMatthew G. Knepley /*@
5300b0441da4SMatthew G. Knepley   DMSetBasicAdjacency - Set the flags for determining variable influence, using either the default or field 0 if it is defined
5301b0441da4SMatthew G. Knepley 
530220f4b53cSBarry Smith   Not Collective
5303b0441da4SMatthew G. Knepley 
5304b0441da4SMatthew G. Knepley   Input Parameters:
530520f4b53cSBarry Smith + dm         - The `DM` object
5306b0441da4SMatthew G. Knepley . useCone    - Flag for variable influence starting with the cone operation
5307b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
5308b0441da4SMatthew G. Knepley 
5309b0441da4SMatthew G. Knepley   Level: developer
5310b0441da4SMatthew G. Knepley 
531120f4b53cSBarry Smith   Notes:
531220f4b53cSBarry Smith .vb
531320f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
531420f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
531520f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
531620f4b53cSBarry Smith .ve
531720f4b53cSBarry Smith 
53181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetBasicAdjacency()`, `DMGetField()`, `DMSetField()`
5319b0441da4SMatthew G. Knepley @*/
5320d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetBasicAdjacency(DM dm, PetscBool useCone, PetscBool useClosure)
5321d71ae5a4SJacob Faibussowitsch {
5322b0441da4SMatthew G. Knepley   PetscInt Nf;
5323b0441da4SMatthew G. Knepley 
5324b0441da4SMatthew G. Knepley   PetscFunctionBegin;
5325b0441da4SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
53269566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
5327b0441da4SMatthew G. Knepley   if (!Nf) {
53289566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure));
5329b0441da4SMatthew G. Knepley   } else {
53309566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, 0, useCone, useClosure));
5331e5e52638SMatthew G. Knepley   }
53323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5333e5e52638SMatthew G. Knepley }
5334e5e52638SMatthew G. Knepley 
5335d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompleteBCLabels_Internal(DM dm)
5336d71ae5a4SJacob Faibussowitsch {
5337799db056SMatthew G. Knepley   DM           plex;
5338799db056SMatthew G. Knepley   DMLabel     *labels, *glabels;
5339799db056SMatthew G. Knepley   const char **names;
5340799db056SMatthew G. Knepley   char        *sendNames, *recvNames;
5341799db056SMatthew G. Knepley   PetscInt     Nds, s, maxLabels = 0, maxLen = 0, gmaxLen, Nl = 0, gNl, l, gl, m;
5342799db056SMatthew G. Knepley   size_t       len;
5343799db056SMatthew G. Knepley   MPI_Comm     comm;
5344799db056SMatthew G. Knepley   PetscMPIInt  rank, size, p, *counts, *displs;
5345783e2ec8SMatthew G. Knepley 
5346783e2ec8SMatthew G. Knepley   PetscFunctionBegin;
5347799db056SMatthew G. Knepley   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
5348799db056SMatthew G. Knepley   PetscCallMPI(MPI_Comm_size(comm, &size));
5349799db056SMatthew G. Knepley   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5350799db056SMatthew G. Knepley   PetscCall(DMGetNumDS(dm, &Nds));
5351799db056SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5352799db056SMatthew G. Knepley     PetscDS  dsBC;
5353799db056SMatthew G. Knepley     PetscInt numBd;
5354799db056SMatthew G. Knepley 
535507218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL));
5356799db056SMatthew G. Knepley     PetscCall(PetscDSGetNumBoundary(dsBC, &numBd));
5357799db056SMatthew G. Knepley     maxLabels += numBd;
5358799db056SMatthew G. Knepley   }
5359799db056SMatthew G. Knepley   PetscCall(PetscCalloc1(maxLabels, &labels));
5360799db056SMatthew G. Knepley   /* Get list of labels to be completed */
5361799db056SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5362799db056SMatthew G. Knepley     PetscDS  dsBC;
5363799db056SMatthew G. Knepley     PetscInt numBd, bd;
5364799db056SMatthew G. Knepley 
536507218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL));
5366799db056SMatthew G. Knepley     PetscCall(PetscDSGetNumBoundary(dsBC, &numBd));
5367799db056SMatthew G. Knepley     for (bd = 0; bd < numBd; ++bd) {
5368799db056SMatthew G. Knepley       DMLabel      label;
5369799db056SMatthew G. Knepley       PetscInt     field;
5370799db056SMatthew G. Knepley       PetscObject  obj;
5371799db056SMatthew G. Knepley       PetscClassId id;
5372799db056SMatthew G. Knepley 
5373799db056SMatthew G. Knepley       PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL));
53749566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, &obj));
53759566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
5376799db056SMatthew G. Knepley       if (!(id == PETSCFE_CLASSID) || !label) continue;
53779371c9d4SSatish Balay       for (l = 0; l < Nl; ++l)
53789371c9d4SSatish Balay         if (labels[l] == label) break;
5379799db056SMatthew G. Knepley       if (l == Nl) labels[Nl++] = label;
5380783e2ec8SMatthew G. Knepley     }
5381799db056SMatthew G. Knepley   }
5382799db056SMatthew G. Knepley   /* Get label names */
5383799db056SMatthew G. Knepley   PetscCall(PetscMalloc1(Nl, &names));
5384799db056SMatthew G. Knepley   for (l = 0; l < Nl; ++l) PetscCall(PetscObjectGetName((PetscObject)labels[l], &names[l]));
53859371c9d4SSatish Balay   for (l = 0; l < Nl; ++l) {
53869371c9d4SSatish Balay     PetscCall(PetscStrlen(names[l], &len));
53879371c9d4SSatish Balay     maxLen = PetscMax(maxLen, (PetscInt)len + 2);
53889371c9d4SSatish Balay   }
5389799db056SMatthew G. Knepley   PetscCall(PetscFree(labels));
5390712fec58SPierre Jolivet   PetscCall(MPIU_Allreduce(&maxLen, &gmaxLen, 1, MPIU_INT, MPI_MAX, comm));
5391799db056SMatthew G. Knepley   PetscCall(PetscCalloc1(Nl * gmaxLen, &sendNames));
5392c6a7a370SJeremy L Thompson   for (l = 0; l < Nl; ++l) PetscCall(PetscStrncpy(&sendNames[gmaxLen * l], names[l], gmaxLen));
5393799db056SMatthew G. Knepley   PetscCall(PetscFree(names));
5394799db056SMatthew G. Knepley   /* Put all names on all processes */
5395799db056SMatthew G. Knepley   PetscCall(PetscCalloc2(size, &counts, size + 1, &displs));
5396799db056SMatthew G. Knepley   PetscCallMPI(MPI_Allgather(&Nl, 1, MPI_INT, counts, 1, MPI_INT, comm));
5397799db056SMatthew G. Knepley   for (p = 0; p < size; ++p) displs[p + 1] = displs[p] + counts[p];
5398799db056SMatthew G. Knepley   gNl = displs[size];
53999371c9d4SSatish Balay   for (p = 0; p < size; ++p) {
54009371c9d4SSatish Balay     counts[p] *= gmaxLen;
54019371c9d4SSatish Balay     displs[p] *= gmaxLen;
54029371c9d4SSatish Balay   }
5403799db056SMatthew G. Knepley   PetscCall(PetscCalloc2(gNl * gmaxLen, &recvNames, gNl, &glabels));
5404799db056SMatthew G. Knepley   PetscCallMPI(MPI_Allgatherv(sendNames, counts[rank], MPI_CHAR, recvNames, counts, displs, MPI_CHAR, comm));
5405799db056SMatthew G. Knepley   PetscCall(PetscFree2(counts, displs));
5406799db056SMatthew G. Knepley   PetscCall(PetscFree(sendNames));
5407799db056SMatthew G. Knepley   for (l = 0, gl = 0; l < gNl; ++l) {
5408799db056SMatthew G. Knepley     PetscCall(DMGetLabel(dm, &recvNames[l * gmaxLen], &glabels[gl]));
5409799db056SMatthew G. Knepley     PetscCheck(glabels[gl], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Label %s missing on rank %d", &recvNames[l * gmaxLen], rank);
54109371c9d4SSatish Balay     for (m = 0; m < gl; ++m)
54119371c9d4SSatish Balay       if (glabels[m] == glabels[gl]) continue;
54129566063dSJacob Faibussowitsch     PetscCall(DMConvert(dm, DMPLEX, &plex));
5413799db056SMatthew G. Knepley     PetscCall(DMPlexLabelComplete(plex, glabels[gl]));
54149566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&plex));
5415799db056SMatthew G. Knepley     ++gl;
5416783e2ec8SMatthew G. Knepley   }
5417799db056SMatthew G. Knepley   PetscCall(PetscFree2(recvNames, glabels));
54183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5419783e2ec8SMatthew G. Knepley }
5420783e2ec8SMatthew G. Knepley 
5421d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDSEnlarge_Static(DM dm, PetscInt NdsNew)
5422d71ae5a4SJacob Faibussowitsch {
5423e5e52638SMatthew G. Knepley   DMSpace *tmpd;
5424e5e52638SMatthew G. Knepley   PetscInt Nds = dm->Nds, s;
5425e5e52638SMatthew G. Knepley 
5426e5e52638SMatthew G. Knepley   PetscFunctionBegin;
54273ba16761SJacob Faibussowitsch   if (Nds >= NdsNew) PetscFunctionReturn(PETSC_SUCCESS);
54289566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(NdsNew, &tmpd));
5429e5e52638SMatthew G. Knepley   for (s = 0; s < Nds; ++s) tmpd[s] = dm->probs[s];
54309371c9d4SSatish Balay   for (s = Nds; s < NdsNew; ++s) {
54319371c9d4SSatish Balay     tmpd[s].ds     = NULL;
54329371c9d4SSatish Balay     tmpd[s].label  = NULL;
54339371c9d4SSatish Balay     tmpd[s].fields = NULL;
54349371c9d4SSatish Balay   }
54359566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->probs));
5436e5e52638SMatthew G. Knepley   dm->Nds   = NdsNew;
5437e5e52638SMatthew G. Knepley   dm->probs = tmpd;
54383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5439e5e52638SMatthew G. Knepley }
5440e5e52638SMatthew G. Knepley 
5441e5e52638SMatthew G. Knepley /*@
544220f4b53cSBarry Smith   DMGetNumDS - Get the number of discrete systems in the `DM`
5443e5e52638SMatthew G. Knepley 
544420f4b53cSBarry Smith   Not Collective
5445e5e52638SMatthew G. Knepley 
5446e5e52638SMatthew G. Knepley   Input Parameter:
544720f4b53cSBarry Smith . dm - The `DM`
5448e5e52638SMatthew G. Knepley 
5449e5e52638SMatthew G. Knepley   Output Parameter:
545020f4b53cSBarry Smith . Nds - The number of `PetscDS` objects
5451e5e52638SMatthew G. Knepley 
5452e5e52638SMatthew G. Knepley   Level: intermediate
5453e5e52638SMatthew G. Knepley 
54541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMGetCellDS()`
5455e5e52638SMatthew G. Knepley @*/
5456d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumDS(DM dm, PetscInt *Nds)
5457d71ae5a4SJacob Faibussowitsch {
5458e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5459e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
54604f572ea9SToby Isaac   PetscAssertPointer(Nds, 2);
5461e5e52638SMatthew G. Knepley   *Nds = dm->Nds;
54623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5463e5e52638SMatthew G. Knepley }
5464e5e52638SMatthew G. Knepley 
5465e5e52638SMatthew G. Knepley /*@
546620f4b53cSBarry Smith   DMClearDS - Remove all discrete systems from the `DM`
5467e5e52638SMatthew G. Knepley 
546820f4b53cSBarry Smith   Logically Collective
5469e5e52638SMatthew G. Knepley 
5470e5e52638SMatthew G. Knepley   Input Parameter:
547120f4b53cSBarry Smith . dm - The `DM`
5472e5e52638SMatthew G. Knepley 
5473e5e52638SMatthew G. Knepley   Level: intermediate
5474e5e52638SMatthew G. Knepley 
54751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumDS()`, `DMGetDS()`, `DMSetField()`
5476e5e52638SMatthew G. Knepley @*/
5477d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearDS(DM dm)
5478d71ae5a4SJacob Faibussowitsch {
5479e5e52638SMatthew G. Knepley   PetscInt s;
5480e5e52638SMatthew G. Knepley 
5481e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5482e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5483e5e52638SMatthew G. Knepley   for (s = 0; s < dm->Nds; ++s) {
54849566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dm->probs[s].ds));
548507218a29SMatthew G. Knepley     PetscCall(PetscDSDestroy(&dm->probs[s].dsIn));
54869566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&dm->probs[s].label));
54879566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&dm->probs[s].fields));
5488e5e52638SMatthew G. Knepley   }
54899566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->probs));
5490e5e52638SMatthew G. Knepley   dm->probs = NULL;
5491e5e52638SMatthew G. Knepley   dm->Nds   = 0;
54923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5493e5e52638SMatthew G. Knepley }
5494e5e52638SMatthew G. Knepley 
5495e5e52638SMatthew G. Knepley /*@
549620f4b53cSBarry Smith   DMGetDS - Get the default `PetscDS`
5497e5e52638SMatthew G. Knepley 
549820f4b53cSBarry Smith   Not Collective
5499e5e52638SMatthew G. Knepley 
5500e5e52638SMatthew G. Knepley   Input Parameter:
550120f4b53cSBarry Smith . dm - The `DM`
5502e5e52638SMatthew G. Knepley 
5503e5e52638SMatthew G. Knepley   Output Parameter:
550407218a29SMatthew G. Knepley . ds - The default `PetscDS`
5505e5e52638SMatthew G. Knepley 
5506e5e52638SMatthew G. Knepley   Level: intermediate
5507e5e52638SMatthew G. Knepley 
55081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCellDS()`, `DMGetRegionDS()`
5509e5e52638SMatthew G. Knepley @*/
551007218a29SMatthew G. Knepley PetscErrorCode DMGetDS(DM dm, PetscDS *ds)
5511d71ae5a4SJacob Faibussowitsch {
5512e5e52638SMatthew G. Knepley   PetscFunctionBeginHot;
5513e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
55144f572ea9SToby Isaac   PetscAssertPointer(ds, 2);
551507218a29SMatthew G. Knepley   PetscCheck(dm->Nds > 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Need to call DMCreateDS() before calling DMGetDS()");
551607218a29SMatthew G. Knepley   *ds = dm->probs[0].ds;
55173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5518e5e52638SMatthew G. Knepley }
5519e5e52638SMatthew G. Knepley 
5520e5e52638SMatthew G. Knepley /*@
552120f4b53cSBarry Smith   DMGetCellDS - Get the `PetscDS` defined on a given cell
5522e5e52638SMatthew G. Knepley 
552320f4b53cSBarry Smith   Not Collective
5524e5e52638SMatthew G. Knepley 
5525e5e52638SMatthew G. Knepley   Input Parameters:
552620f4b53cSBarry Smith + dm    - The `DM`
552720f4b53cSBarry Smith - point - Cell for the `PetscDS`
5528e5e52638SMatthew G. Knepley 
552907218a29SMatthew G. Knepley   Output Parameters:
553007218a29SMatthew G. Knepley + ds   - The `PetscDS` defined on the given cell
553107218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or NULL if the same ds
5532e5e52638SMatthew G. Knepley 
5533e5e52638SMatthew G. Knepley   Level: developer
5534e5e52638SMatthew G. Knepley 
55351cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMSetRegionDS()`
5536e5e52638SMatthew G. Knepley @*/
553707218a29SMatthew G. Knepley PetscErrorCode DMGetCellDS(DM dm, PetscInt point, PetscDS *ds, PetscDS *dsIn)
5538d71ae5a4SJacob Faibussowitsch {
553907218a29SMatthew G. Knepley   PetscDS  dsDef = NULL;
5540e5e52638SMatthew G. Knepley   PetscInt s;
5541e5e52638SMatthew G. Knepley 
5542e5e52638SMatthew G. Knepley   PetscFunctionBeginHot;
5543e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
55444f572ea9SToby Isaac   if (ds) PetscAssertPointer(ds, 3);
55454f572ea9SToby Isaac   if (dsIn) PetscAssertPointer(dsIn, 4);
554663a3b9bcSJacob Faibussowitsch   PetscCheck(point >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Mesh point cannot be negative: %" PetscInt_FMT, point);
554707218a29SMatthew G. Knepley   if (ds) *ds = NULL;
554807218a29SMatthew G. Knepley   if (dsIn) *dsIn = NULL;
5549e5e52638SMatthew G. Knepley   for (s = 0; s < dm->Nds; ++s) {
5550e5e52638SMatthew G. Knepley     PetscInt val;
5551e5e52638SMatthew G. Knepley 
55529371c9d4SSatish Balay     if (!dm->probs[s].label) {
555307218a29SMatthew G. Knepley       dsDef = dm->probs[s].ds;
55549371c9d4SSatish Balay     } else {
55559566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(dm->probs[s].label, point, &val));
55569371c9d4SSatish Balay       if (val >= 0) {
555707218a29SMatthew G. Knepley         if (ds) *ds = dm->probs[s].ds;
555807218a29SMatthew G. Knepley         if (dsIn) *dsIn = dm->probs[s].dsIn;
55599371c9d4SSatish Balay         break;
55609371c9d4SSatish Balay       }
5561e5e52638SMatthew G. Knepley     }
5562e5e52638SMatthew G. Knepley   }
556307218a29SMatthew G. Knepley   if (ds && !*ds) *ds = dsDef;
55643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5565e5e52638SMatthew G. Knepley }
5566e5e52638SMatthew G. Knepley 
5567e5e52638SMatthew G. Knepley /*@
556820f4b53cSBarry Smith   DMGetRegionDS - Get the `PetscDS` for a given mesh region, defined by a `DMLabel`
5569e5e52638SMatthew G. Knepley 
557020f4b53cSBarry Smith   Not Collective
5571e5e52638SMatthew G. Knepley 
5572e5e52638SMatthew G. Knepley   Input Parameters:
557320f4b53cSBarry Smith + dm    - The `DM`
557420f4b53cSBarry Smith - label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh
5575e5e52638SMatthew G. Knepley 
5576b3cf3223SMatthew G. Knepley   Output Parameters:
557720f4b53cSBarry Smith + fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL`
557807218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region, or `NULL`
557907218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input in the given region, or `NULL`
5580e5e52638SMatthew G. Knepley 
5581e5e52638SMatthew G. Knepley   Level: advanced
5582e5e52638SMatthew G. Knepley 
558320f4b53cSBarry Smith   Note:
558420f4b53cSBarry Smith   If a non-`NULL` label is given, but there is no `PetscDS` on that specific label,
558520f4b53cSBarry Smith   the `PetscDS` for the full domain (if present) is returned. Returns with
558607218a29SMatthew G. Knepley   fields = `NULL` and ds = `NULL` if there is no `PetscDS` for the full domain.
558720f4b53cSBarry Smith 
55881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5589e5e52638SMatthew G. Knepley @*/
559007218a29SMatthew G. Knepley PetscErrorCode DMGetRegionDS(DM dm, DMLabel label, IS *fields, PetscDS *ds, PetscDS *dsIn)
5591d71ae5a4SJacob Faibussowitsch {
5592e5e52638SMatthew G. Knepley   PetscInt Nds = dm->Nds, s;
5593e5e52638SMatthew G. Knepley 
5594e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5595e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5596e5e52638SMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
55979371c9d4SSatish Balay   if (fields) {
55984f572ea9SToby Isaac     PetscAssertPointer(fields, 3);
55999371c9d4SSatish Balay     *fields = NULL;
56009371c9d4SSatish Balay   }
56019371c9d4SSatish Balay   if (ds) {
56024f572ea9SToby Isaac     PetscAssertPointer(ds, 4);
56039371c9d4SSatish Balay     *ds = NULL;
56049371c9d4SSatish Balay   }
560507218a29SMatthew G. Knepley   if (dsIn) {
56064f572ea9SToby Isaac     PetscAssertPointer(dsIn, 5);
560707218a29SMatthew G. Knepley     *dsIn = NULL;
560807218a29SMatthew G. Knepley   }
5609e5e52638SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5610154ca461SJed Brown     if (dm->probs[s].label == label || !dm->probs[s].label) {
5611b3cf3223SMatthew G. Knepley       if (fields) *fields = dm->probs[s].fields;
5612b3cf3223SMatthew G. Knepley       if (ds) *ds = dm->probs[s].ds;
561307218a29SMatthew G. Knepley       if (dsIn) *dsIn = dm->probs[s].dsIn;
56143ba16761SJacob Faibussowitsch       if (dm->probs[s].label) PetscFunctionReturn(PETSC_SUCCESS);
5615b3cf3223SMatthew G. Knepley     }
5616e5e52638SMatthew G. Knepley   }
56173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5618e5e52638SMatthew G. Knepley }
5619e5e52638SMatthew G. Knepley 
5620e5e52638SMatthew G. Knepley /*@
5621bb7acecfSBarry Smith   DMSetRegionDS - Set the `PetscDS` for a given mesh region, defined by a `DMLabel`
5622083401c6SMatthew G. Knepley 
562320f4b53cSBarry Smith   Collective
5624083401c6SMatthew G. Knepley 
5625083401c6SMatthew G. Knepley   Input Parameters:
5626bb7acecfSBarry Smith + dm     - The `DM`
562720f4b53cSBarry Smith . label  - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh
562807218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` for all fields
562907218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region
563007218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS`
5631083401c6SMatthew G. Knepley 
563220f4b53cSBarry Smith   Level: advanced
563320f4b53cSBarry Smith 
5634bb7acecfSBarry Smith   Note:
5635bb7acecfSBarry Smith   If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`. If the `PetscDS` is replaced,
5636083401c6SMatthew G. Knepley   the fields argument is ignored.
5637083401c6SMatthew G. Knepley 
56381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionNumDS()`, `DMGetDS()`, `DMGetCellDS()`
5639083401c6SMatthew G. Knepley @*/
564007218a29SMatthew G. Knepley PetscErrorCode DMSetRegionDS(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn)
5641d71ae5a4SJacob Faibussowitsch {
5642083401c6SMatthew G. Knepley   PetscInt Nds = dm->Nds, s;
5643083401c6SMatthew G. Knepley 
5644083401c6SMatthew G. Knepley   PetscFunctionBegin;
5645083401c6SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5646083401c6SMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
564707218a29SMatthew G. Knepley   if (fields) PetscValidHeaderSpecific(fields, IS_CLASSID, 3);
5648064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 4);
564907218a29SMatthew G. Knepley   if (dsIn) PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 5);
5650083401c6SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5651083401c6SMatthew G. Knepley     if (dm->probs[s].label == label) {
56529566063dSJacob Faibussowitsch       PetscCall(PetscDSDestroy(&dm->probs[s].ds));
565307218a29SMatthew G. Knepley       PetscCall(PetscDSDestroy(&dm->probs[s].dsIn));
5654083401c6SMatthew G. Knepley       dm->probs[s].ds   = ds;
565507218a29SMatthew G. Knepley       dm->probs[s].dsIn = dsIn;
56563ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
5657083401c6SMatthew G. Knepley     }
5658083401c6SMatthew G. Knepley   }
56599566063dSJacob Faibussowitsch   PetscCall(DMDSEnlarge_Static(dm, Nds + 1));
56609566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
56619566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)fields));
56629566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)ds));
566307218a29SMatthew G. Knepley   PetscCall(PetscObjectReference((PetscObject)dsIn));
5664083401c6SMatthew G. Knepley   if (!label) {
5665083401c6SMatthew G. Knepley     /* Put the NULL label at the front, so it is returned as the default */
5666083401c6SMatthew G. Knepley     for (s = Nds - 1; s >= 0; --s) dm->probs[s + 1] = dm->probs[s];
5667083401c6SMatthew G. Knepley     Nds = 0;
5668083401c6SMatthew G. Knepley   }
5669083401c6SMatthew G. Knepley   dm->probs[Nds].label  = label;
5670083401c6SMatthew G. Knepley   dm->probs[Nds].fields = fields;
5671083401c6SMatthew G. Knepley   dm->probs[Nds].ds     = ds;
567207218a29SMatthew G. Knepley   dm->probs[Nds].dsIn   = dsIn;
56733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5674083401c6SMatthew G. Knepley }
5675083401c6SMatthew G. Knepley 
5676083401c6SMatthew G. Knepley /*@
567720f4b53cSBarry Smith   DMGetRegionNumDS - Get the `PetscDS` for a given mesh region, defined by the region number
5678e5e52638SMatthew G. Knepley 
567920f4b53cSBarry Smith   Not Collective
5680e5e52638SMatthew G. Knepley 
5681e5e52638SMatthew G. Knepley   Input Parameters:
568220f4b53cSBarry Smith + dm  - The `DM`
5683e5e52638SMatthew G. Knepley - num - The region number, in [0, Nds)
5684e5e52638SMatthew G. Knepley 
5685e5e52638SMatthew G. Knepley   Output Parameters:
568620f4b53cSBarry Smith + label  - The region label, or `NULL`
568720f4b53cSBarry Smith . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL`
568807218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region, or `NULL`
568907218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input in the given region, or `NULL`
5690e5e52638SMatthew G. Knepley 
5691e5e52638SMatthew G. Knepley   Level: advanced
5692e5e52638SMatthew G. Knepley 
56931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5694e5e52638SMatthew G. Knepley @*/
569507218a29SMatthew G. Knepley PetscErrorCode DMGetRegionNumDS(DM dm, PetscInt num, DMLabel *label, IS *fields, PetscDS *ds, PetscDS *dsIn)
5696d71ae5a4SJacob Faibussowitsch {
5697e5e52638SMatthew G. Knepley   PetscInt Nds;
5698e5e52638SMatthew G. Knepley 
5699e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5700e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
57019566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
570263a3b9bcSJacob Faibussowitsch   PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds);
5703e5e52638SMatthew G. Knepley   if (label) {
57044f572ea9SToby Isaac     PetscAssertPointer(label, 3);
5705e5e52638SMatthew G. Knepley     *label = dm->probs[num].label;
5706e5e52638SMatthew G. Knepley   }
5707b3cf3223SMatthew G. Knepley   if (fields) {
57084f572ea9SToby Isaac     PetscAssertPointer(fields, 4);
5709b3cf3223SMatthew G. Knepley     *fields = dm->probs[num].fields;
5710b3cf3223SMatthew G. Knepley   }
5711e5e52638SMatthew G. Knepley   if (ds) {
57124f572ea9SToby Isaac     PetscAssertPointer(ds, 5);
5713e5e52638SMatthew G. Knepley     *ds = dm->probs[num].ds;
5714e5e52638SMatthew G. Knepley   }
571507218a29SMatthew G. Knepley   if (dsIn) {
57164f572ea9SToby Isaac     PetscAssertPointer(dsIn, 6);
571707218a29SMatthew G. Knepley     *dsIn = dm->probs[num].dsIn;
571807218a29SMatthew G. Knepley   }
57193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5720e5e52638SMatthew G. Knepley }
5721e5e52638SMatthew G. Knepley 
5722e5e52638SMatthew G. Knepley /*@
572320f4b53cSBarry Smith   DMSetRegionNumDS - Set the `PetscDS` for a given mesh region, defined by the region number
5724e5e52638SMatthew G. Knepley 
572520f4b53cSBarry Smith   Not Collective
5726e5e52638SMatthew G. Knepley 
5727e5e52638SMatthew G. Knepley   Input Parameters:
572820f4b53cSBarry Smith + dm     - The `DM`
5729083401c6SMatthew G. Knepley . num    - The region number, in [0, Nds)
573020f4b53cSBarry Smith . label  - The region label, or `NULL`
573107218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` to prevent setting
573207218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region, or `NULL` to prevent setting
573307218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS`
5734e5e52638SMatthew G. Knepley 
5735e5e52638SMatthew G. Knepley   Level: advanced
5736e5e52638SMatthew G. Knepley 
57371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5738e5e52638SMatthew G. Knepley @*/
573907218a29SMatthew G. Knepley PetscErrorCode DMSetRegionNumDS(DM dm, PetscInt num, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn)
5740d71ae5a4SJacob Faibussowitsch {
5741083401c6SMatthew G. Knepley   PetscInt Nds;
5742e5e52638SMatthew G. Knepley 
5743e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5744e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5745ad540459SPierre Jolivet   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3);
57469566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
574763a3b9bcSJacob Faibussowitsch   PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds);
57489566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
57499566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&dm->probs[num].label));
5750083401c6SMatthew G. Knepley   dm->probs[num].label = label;
5751083401c6SMatthew G. Knepley   if (fields) {
5752083401c6SMatthew G. Knepley     PetscValidHeaderSpecific(fields, IS_CLASSID, 4);
57539566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)fields));
57549566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&dm->probs[num].fields));
5755083401c6SMatthew G. Knepley     dm->probs[num].fields = fields;
5756e5e52638SMatthew G. Knepley   }
5757083401c6SMatthew G. Knepley   if (ds) {
5758083401c6SMatthew G. Knepley     PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 5);
57599566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)ds));
57609566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dm->probs[num].ds));
5761083401c6SMatthew G. Knepley     dm->probs[num].ds = ds;
5762083401c6SMatthew G. Knepley   }
576307218a29SMatthew G. Knepley   if (dsIn) {
576407218a29SMatthew G. Knepley     PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 6);
576507218a29SMatthew G. Knepley     PetscCall(PetscObjectReference((PetscObject)dsIn));
576607218a29SMatthew G. Knepley     PetscCall(PetscDSDestroy(&dm->probs[num].dsIn));
576707218a29SMatthew G. Knepley     dm->probs[num].dsIn = dsIn;
576807218a29SMatthew G. Knepley   }
57693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5770e5e52638SMatthew G. Knepley }
5771e5e52638SMatthew G. Knepley 
5772e5e52638SMatthew G. Knepley /*@
577320f4b53cSBarry Smith   DMFindRegionNum - Find the region number for a given `PetscDS`, or -1 if it is not found.
57741d3af9e0SMatthew G. Knepley 
577520f4b53cSBarry Smith   Not Collective
57761d3af9e0SMatthew G. Knepley 
57771d3af9e0SMatthew G. Knepley   Input Parameters:
577820f4b53cSBarry Smith + dm - The `DM`
577920f4b53cSBarry Smith - ds - The `PetscDS` defined on the given region
57801d3af9e0SMatthew G. Knepley 
57811d3af9e0SMatthew G. Knepley   Output Parameter:
57821d3af9e0SMatthew G. Knepley . num - The region number, in [0, Nds), or -1 if not found
57831d3af9e0SMatthew G. Knepley 
57841d3af9e0SMatthew G. Knepley   Level: advanced
57851d3af9e0SMatthew G. Knepley 
57861cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
57871d3af9e0SMatthew G. Knepley @*/
5788d71ae5a4SJacob Faibussowitsch PetscErrorCode DMFindRegionNum(DM dm, PetscDS ds, PetscInt *num)
5789d71ae5a4SJacob Faibussowitsch {
57901d3af9e0SMatthew G. Knepley   PetscInt Nds, n;
57911d3af9e0SMatthew G. Knepley 
57921d3af9e0SMatthew G. Knepley   PetscFunctionBegin;
57931d3af9e0SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
57941d3af9e0SMatthew G. Knepley   PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 2);
57954f572ea9SToby Isaac   PetscAssertPointer(num, 3);
57969566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
57979371c9d4SSatish Balay   for (n = 0; n < Nds; ++n)
57989371c9d4SSatish Balay     if (ds == dm->probs[n].ds) break;
57991d3af9e0SMatthew G. Knepley   if (n >= Nds) *num = -1;
58001d3af9e0SMatthew G. Knepley   else *num = n;
58013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
58021d3af9e0SMatthew G. Knepley }
58031d3af9e0SMatthew G. Knepley 
58042df84da0SMatthew G. Knepley /*@C
5805bb7acecfSBarry Smith   DMCreateFEDefault - Create a `PetscFE` based on the celltype for the mesh
58062df84da0SMatthew G. Knepley 
580720f4b53cSBarry Smith   Not Collective
58082df84da0SMatthew G. Knepley 
5809f1a722f8SMatthew G. Knepley   Input Parameters:
5810bb7acecfSBarry Smith + dm     - The `DM`
58112df84da0SMatthew G. Knepley . Nc     - The number of components for the field
581220f4b53cSBarry Smith . prefix - The options prefix for the output `PetscFE`, or `NULL`
5813bb7acecfSBarry Smith - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree
58142df84da0SMatthew G. Knepley 
58152df84da0SMatthew G. Knepley   Output Parameter:
5816bb7acecfSBarry Smith . fem - The `PetscFE`
58172df84da0SMatthew G. Knepley 
581820f4b53cSBarry Smith   Level: intermediate
581920f4b53cSBarry Smith 
5820bb7acecfSBarry Smith   Note:
5821bb7acecfSBarry Smith   This is a convenience method that just calls `PetscFECreateByCell()` underneath.
58222df84da0SMatthew G. Knepley 
58231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscFECreateByCell()`, `DMAddField()`, `DMCreateDS()`, `DMGetCellDS()`, `DMGetRegionDS()`
58242df84da0SMatthew G. Knepley @*/
5825d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFEDefault(DM dm, PetscInt Nc, const char prefix[], PetscInt qorder, PetscFE *fem)
5826d71ae5a4SJacob Faibussowitsch {
58272df84da0SMatthew G. Knepley   DMPolytopeType ct;
58282df84da0SMatthew G. Knepley   PetscInt       dim, cStart;
58292df84da0SMatthew G. Knepley 
58302df84da0SMatthew G. Knepley   PetscFunctionBegin;
58312df84da0SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
58322df84da0SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, Nc, 2);
58334f572ea9SToby Isaac   if (prefix) PetscAssertPointer(prefix, 3);
58342df84da0SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, qorder, 4);
58354f572ea9SToby Isaac   PetscAssertPointer(fem, 5);
58369566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
58379566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL));
58389566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCellType(dm, cStart, &ct));
58399566063dSJacob Faibussowitsch   PetscCall(PetscFECreateByCell(PETSC_COMM_SELF, dim, Nc, ct, prefix, qorder, fem));
58403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
58412df84da0SMatthew G. Knepley }
58422df84da0SMatthew G. Knepley 
58431d3af9e0SMatthew G. Knepley /*@
5844bb7acecfSBarry Smith   DMCreateDS - Create the discrete systems for the `DM` based upon the fields added to the `DM`
5845e5e52638SMatthew G. Knepley 
584620f4b53cSBarry Smith   Collective
5847e5e52638SMatthew G. Knepley 
5848e5e52638SMatthew G. Knepley   Input Parameter:
5849bb7acecfSBarry Smith . dm - The `DM`
5850e5e52638SMatthew G. Knepley 
585120f4b53cSBarry Smith   Options Database Key:
5852bb7acecfSBarry Smith . -dm_petscds_view - View all the `PetscDS` objects in this `DM`
585345480ffeSMatthew G. Knepley 
585420f4b53cSBarry Smith   Level: intermediate
585520f4b53cSBarry Smith 
58561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetField`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`
5857e5e52638SMatthew G. Knepley @*/
5858d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDS(DM dm)
5859d71ae5a4SJacob Faibussowitsch {
5860e5e52638SMatthew G. Knepley   MPI_Comm  comm;
5861083401c6SMatthew G. Knepley   PetscDS   dsDef;
5862083401c6SMatthew G. Knepley   DMLabel  *labelSet;
5863f9244615SMatthew G. Knepley   PetscInt  dE, Nf = dm->Nf, f, s, Nl, l, Ndef, k;
5864f9244615SMatthew G. Knepley   PetscBool doSetup = PETSC_TRUE, flg;
5865e5e52638SMatthew G. Knepley 
5866e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5867e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
58683ba16761SJacob Faibussowitsch   if (!dm->fields) PetscFunctionReturn(PETSC_SUCCESS);
58699566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
58709566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dE));
5871083401c6SMatthew G. Knepley   /* Determine how many regions we have */
58729566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Nf, &labelSet));
5873083401c6SMatthew G. Knepley   Nl   = 0;
5874083401c6SMatthew G. Knepley   Ndef = 0;
5875083401c6SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
5876083401c6SMatthew G. Knepley     DMLabel  label = dm->fields[f].label;
5877083401c6SMatthew G. Knepley     PetscInt l;
5878083401c6SMatthew G. Knepley 
5879f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED
5880f918ec44SMatthew G. Knepley     /* Move CEED context to discretizations */
5881f918ec44SMatthew G. Knepley     {
5882f918ec44SMatthew G. Knepley       PetscClassId id;
5883f918ec44SMatthew G. Knepley 
58849566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(dm->fields[f].disc, &id));
5885f918ec44SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
5886f918ec44SMatthew G. Knepley         Ceed ceed;
5887f918ec44SMatthew G. Knepley 
58889566063dSJacob Faibussowitsch         PetscCall(DMGetCeed(dm, &ceed));
58899566063dSJacob Faibussowitsch         PetscCall(PetscFESetCeed((PetscFE)dm->fields[f].disc, ceed));
5890f918ec44SMatthew G. Knepley       }
5891f918ec44SMatthew G. Knepley     }
5892f918ec44SMatthew G. Knepley #endif
58939371c9d4SSatish Balay     if (!label) {
58949371c9d4SSatish Balay       ++Ndef;
58959371c9d4SSatish Balay       continue;
58969371c9d4SSatish Balay     }
58979371c9d4SSatish Balay     for (l = 0; l < Nl; ++l)
58989371c9d4SSatish Balay       if (label == labelSet[l]) break;
5899083401c6SMatthew G. Knepley     if (l < Nl) continue;
5900083401c6SMatthew G. Knepley     labelSet[Nl++] = label;
5901083401c6SMatthew G. Knepley   }
5902083401c6SMatthew G. Knepley   /* Create default DS if there are no labels to intersect with */
590307218a29SMatthew G. Knepley   PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL));
5904083401c6SMatthew G. Knepley   if (!dsDef && Ndef && !Nl) {
5905b3cf3223SMatthew G. Knepley     IS        fields;
5906b3cf3223SMatthew G. Knepley     PetscInt *fld, nf;
5907b3cf3223SMatthew G. Knepley 
59089371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
59099371c9d4SSatish Balay       if (!dm->fields[f].label) ++nf;
59107a8be351SBarry Smith     PetscCheck(nf, comm, PETSC_ERR_PLIB, "All fields have labels, but we are trying to create a default DS");
59119566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nf, &fld));
59129371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
59139371c9d4SSatish Balay       if (!dm->fields[f].label) fld[nf++] = f;
59149566063dSJacob Faibussowitsch     PetscCall(ISCreate(PETSC_COMM_SELF, &fields));
59159566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_"));
59169566063dSJacob Faibussowitsch     PetscCall(ISSetType(fields, ISGENERAL));
59179566063dSJacob Faibussowitsch     PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER));
591888f0c812SMatthew G. Knepley 
59199566063dSJacob Faibussowitsch     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef));
592007218a29SMatthew G. Knepley     PetscCall(DMSetRegionDS(dm, NULL, fields, dsDef, NULL));
59219566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dsDef));
59229566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&fields));
59232df9ee95SMatthew G. Knepley   }
592407218a29SMatthew G. Knepley   PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL));
59259566063dSJacob Faibussowitsch   if (dsDef) PetscCall(PetscDSSetCoordinateDimension(dsDef, dE));
5926083401c6SMatthew G. Knepley   /* Intersect labels with default fields */
5927083401c6SMatthew G. Knepley   if (Ndef && Nl) {
59280122748bSMatthew G. Knepley     DM              plex;
5929083401c6SMatthew G. Knepley     DMLabel         cellLabel;
5930083401c6SMatthew G. Knepley     IS              fieldIS, allcellIS, defcellIS = NULL;
5931083401c6SMatthew G. Knepley     PetscInt       *fields;
5932083401c6SMatthew G. Knepley     const PetscInt *cells;
5933083401c6SMatthew G. Knepley     PetscInt        depth, nf = 0, n, c;
59340122748bSMatthew G. Knepley 
59359566063dSJacob Faibussowitsch     PetscCall(DMConvert(dm, DMPLEX, &plex));
59369566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepth(plex, &depth));
59379566063dSJacob Faibussowitsch     PetscCall(DMGetStratumIS(plex, "dim", depth, &allcellIS));
59389566063dSJacob Faibussowitsch     if (!allcellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &allcellIS));
59395fedec97SMatthew G. Knepley     /* TODO This looks like it only works for one label */
5940083401c6SMatthew G. Knepley     for (l = 0; l < Nl; ++l) {
5941083401c6SMatthew G. Knepley       DMLabel label = labelSet[l];
5942083401c6SMatthew G. Knepley       IS      pointIS;
5943083401c6SMatthew G. Knepley 
59449566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&defcellIS));
59459566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(label, 1, &pointIS));
59469566063dSJacob Faibussowitsch       PetscCall(ISDifference(allcellIS, pointIS, &defcellIS));
59479566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
5948083401c6SMatthew G. Knepley     }
59499566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&allcellIS));
5950083401c6SMatthew G. Knepley 
59519566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, "defaultCells", &cellLabel));
59529566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(defcellIS, &n));
59539566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(defcellIS, &cells));
59549566063dSJacob Faibussowitsch     for (c = 0; c < n; ++c) PetscCall(DMLabelSetValue(cellLabel, cells[c], 1));
59559566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(defcellIS, &cells));
59569566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&defcellIS));
59579566063dSJacob Faibussowitsch     PetscCall(DMPlexLabelComplete(plex, cellLabel));
5958083401c6SMatthew G. Knepley 
59599566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Ndef, &fields));
59609371c9d4SSatish Balay     for (f = 0; f < Nf; ++f)
59619371c9d4SSatish Balay       if (!dm->fields[f].label) fields[nf++] = f;
59629566063dSJacob Faibussowitsch     PetscCall(ISCreate(PETSC_COMM_SELF, &fieldIS));
59639566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fieldIS, "dm_fields_"));
59649566063dSJacob Faibussowitsch     PetscCall(ISSetType(fieldIS, ISGENERAL));
59659566063dSJacob Faibussowitsch     PetscCall(ISGeneralSetIndices(fieldIS, nf, fields, PETSC_OWN_POINTER));
5966083401c6SMatthew G. Knepley 
59679566063dSJacob Faibussowitsch     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef));
596807218a29SMatthew G. Knepley     PetscCall(DMSetRegionDS(dm, cellLabel, fieldIS, dsDef, NULL));
59699566063dSJacob Faibussowitsch     PetscCall(PetscDSSetCoordinateDimension(dsDef, dE));
59709566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&cellLabel));
59719566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dsDef));
59729566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&fieldIS));
59739566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&plex));
5974083401c6SMatthew G. Knepley   }
5975083401c6SMatthew G. Knepley   /* Create label DSes
5976083401c6SMatthew G. Knepley      - WE ONLY SUPPORT IDENTICAL OR DISJOINT LABELS
5977083401c6SMatthew G. Knepley   */
5978083401c6SMatthew G. Knepley   /* TODO Should check that labels are disjoint */
5979083401c6SMatthew G. Knepley   for (l = 0; l < Nl; ++l) {
5980083401c6SMatthew G. Knepley     DMLabel   label = labelSet[l];
598107218a29SMatthew G. Knepley     PetscDS   ds, dsIn = NULL;
5982083401c6SMatthew G. Knepley     IS        fields;
5983083401c6SMatthew G. Knepley     PetscInt *fld, nf;
5984083401c6SMatthew G. Knepley 
59859566063dSJacob Faibussowitsch     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds));
59869371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
59879371c9d4SSatish Balay       if (label == dm->fields[f].label || !dm->fields[f].label) ++nf;
59889566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nf, &fld));
59899371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
59909371c9d4SSatish Balay       if (label == dm->fields[f].label || !dm->fields[f].label) fld[nf++] = f;
59919566063dSJacob Faibussowitsch     PetscCall(ISCreate(PETSC_COMM_SELF, &fields));
59929566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_"));
59939566063dSJacob Faibussowitsch     PetscCall(ISSetType(fields, ISGENERAL));
59949566063dSJacob Faibussowitsch     PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER));
59959566063dSJacob Faibussowitsch     PetscCall(PetscDSSetCoordinateDimension(ds, dE));
5996083401c6SMatthew G. Knepley     {
5997083401c6SMatthew G. Knepley       DMPolytopeType ct;
5998083401c6SMatthew G. Knepley       PetscInt       lStart, lEnd;
59995fedec97SMatthew G. Knepley       PetscBool      isCohesiveLocal = PETSC_FALSE, isCohesive;
60000122748bSMatthew G. Knepley 
60019566063dSJacob Faibussowitsch       PetscCall(DMLabelGetBounds(label, &lStart, &lEnd));
6002665f567fSMatthew G. Knepley       if (lStart >= 0) {
60039566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCellType(dm, lStart, &ct));
6004412e9a14SMatthew G. Knepley         switch (ct) {
6005412e9a14SMatthew G. Knepley         case DM_POLYTOPE_POINT_PRISM_TENSOR:
6006412e9a14SMatthew G. Knepley         case DM_POLYTOPE_SEG_PRISM_TENSOR:
6007412e9a14SMatthew G. Knepley         case DM_POLYTOPE_TRI_PRISM_TENSOR:
6008d71ae5a4SJacob Faibussowitsch         case DM_POLYTOPE_QUAD_PRISM_TENSOR:
6009d71ae5a4SJacob Faibussowitsch           isCohesiveLocal = PETSC_TRUE;
6010d71ae5a4SJacob Faibussowitsch           break;
6011d71ae5a4SJacob Faibussowitsch         default:
6012d71ae5a4SJacob Faibussowitsch           break;
6013412e9a14SMatthew G. Knepley         }
6014665f567fSMatthew G. Knepley       }
6015712fec58SPierre Jolivet       PetscCall(MPIU_Allreduce(&isCohesiveLocal, &isCohesive, 1, MPIU_BOOL, MPI_LOR, comm));
601607218a29SMatthew G. Knepley       if (isCohesive) {
601707218a29SMatthew G. Knepley         PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsIn));
601807218a29SMatthew G. Knepley         PetscCall(PetscDSSetCoordinateDimension(dsIn, dE));
601907218a29SMatthew G. Knepley       }
60205fedec97SMatthew G. Knepley       for (f = 0, nf = 0; f < Nf; ++f) {
60215fedec97SMatthew G. Knepley         if (label == dm->fields[f].label || !dm->fields[f].label) {
60225fedec97SMatthew G. Knepley           if (label == dm->fields[f].label) {
60239566063dSJacob Faibussowitsch             PetscCall(PetscDSSetDiscretization(ds, nf, NULL));
60249566063dSJacob Faibussowitsch             PetscCall(PetscDSSetCohesive(ds, nf, isCohesive));
602507218a29SMatthew G. Knepley             if (dsIn) {
602607218a29SMatthew G. Knepley               PetscCall(PetscDSSetDiscretization(dsIn, nf, NULL));
602707218a29SMatthew G. Knepley               PetscCall(PetscDSSetCohesive(dsIn, nf, isCohesive));
602807218a29SMatthew G. Knepley             }
60295fedec97SMatthew G. Knepley           }
60305fedec97SMatthew G. Knepley           ++nf;
60315fedec97SMatthew G. Knepley         }
60325fedec97SMatthew G. Knepley       }
6033e5e52638SMatthew G. Knepley     }
603407218a29SMatthew G. Knepley     PetscCall(DMSetRegionDS(dm, label, fields, ds, dsIn));
603507218a29SMatthew G. Knepley     PetscCall(ISDestroy(&fields));
60369566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&ds));
603707218a29SMatthew G. Knepley     PetscCall(PetscDSDestroy(&dsIn));
6038e5e52638SMatthew G. Knepley   }
60399566063dSJacob Faibussowitsch   PetscCall(PetscFree(labelSet));
6040e5e52638SMatthew G. Knepley   /* Set fields in DSes */
6041083401c6SMatthew G. Knepley   for (s = 0; s < dm->Nds; ++s) {
6042083401c6SMatthew G. Knepley     PetscDS         ds     = dm->probs[s].ds;
604307218a29SMatthew G. Knepley     PetscDS         dsIn   = dm->probs[s].dsIn;
6044083401c6SMatthew G. Knepley     IS              fields = dm->probs[s].fields;
6045083401c6SMatthew G. Knepley     const PetscInt *fld;
60465fedec97SMatthew G. Knepley     PetscInt        nf, dsnf;
60475fedec97SMatthew G. Knepley     PetscBool       isCohesive;
6048e5e52638SMatthew G. Knepley 
60499566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsnf));
60509566063dSJacob Faibussowitsch     PetscCall(PetscDSIsCohesive(ds, &isCohesive));
60519566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(fields, &nf));
60529566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(fields, &fld));
6053083401c6SMatthew G. Knepley     for (f = 0; f < nf; ++f) {
6054083401c6SMatthew G. Knepley       PetscObject  disc = dm->fields[fld[f]].disc;
60555fedec97SMatthew G. Knepley       PetscBool    isCohesiveField;
6056e5e52638SMatthew G. Knepley       PetscClassId id;
6057e5e52638SMatthew G. Knepley 
60585fedec97SMatthew G. Knepley       /* Handle DS with no fields */
60599566063dSJacob Faibussowitsch       if (dsnf) PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField));
60605fedec97SMatthew G. Knepley       /* If this is a cohesive cell, then regular fields need the lower dimensional discretization */
606107218a29SMatthew G. Knepley       if (isCohesive) {
606207218a29SMatthew G. Knepley         if (!isCohesiveField) {
606307218a29SMatthew G. Knepley           PetscObject bdDisc;
606407218a29SMatthew G. Knepley 
606507218a29SMatthew G. Knepley           PetscCall(PetscFEGetHeightSubspace((PetscFE)disc, 1, (PetscFE *)&bdDisc));
606607218a29SMatthew G. Knepley           PetscCall(PetscDSSetDiscretization(ds, f, bdDisc));
606707218a29SMatthew G. Knepley           PetscCall(PetscDSSetDiscretization(dsIn, f, disc));
606807218a29SMatthew G. Knepley         } else {
60699566063dSJacob Faibussowitsch           PetscCall(PetscDSSetDiscretization(ds, f, disc));
607007218a29SMatthew G. Knepley           PetscCall(PetscDSSetDiscretization(dsIn, f, disc));
607107218a29SMatthew G. Knepley         }
607207218a29SMatthew G. Knepley       } else {
607307218a29SMatthew G. Knepley         PetscCall(PetscDSSetDiscretization(ds, f, disc));
607407218a29SMatthew G. Knepley       }
6075083401c6SMatthew G. Knepley       /* We allow people to have placeholder fields and construct the Section by hand */
60769566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(disc, &id));
6077e5e52638SMatthew G. Knepley       if ((id != PETSCFE_CLASSID) && (id != PETSCFV_CLASSID)) doSetup = PETSC_FALSE;
6078e5e52638SMatthew G. Knepley     }
60799566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(fields, &fld));
6080e5e52638SMatthew G. Knepley   }
6081f9244615SMatthew G. Knepley   /* Allow k-jet tabulation */
60829566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)dm)->prefix, "-dm_ds_jet_degree", &k, &flg));
6083f9244615SMatthew G. Knepley   if (flg) {
60843b4aee56SMatthew G. Knepley     for (s = 0; s < dm->Nds; ++s) {
60853b4aee56SMatthew G. Knepley       PetscDS  ds   = dm->probs[s].ds;
608607218a29SMatthew G. Knepley       PetscDS  dsIn = dm->probs[s].dsIn;
60873b4aee56SMatthew G. Knepley       PetscInt Nf, f;
60883b4aee56SMatthew G. Knepley 
60899566063dSJacob Faibussowitsch       PetscCall(PetscDSGetNumFields(ds, &Nf));
609007218a29SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
609107218a29SMatthew G. Knepley         PetscCall(PetscDSSetJetDegree(ds, f, k));
609207218a29SMatthew G. Knepley         if (dsIn) PetscCall(PetscDSSetJetDegree(dsIn, f, k));
609307218a29SMatthew G. Knepley       }
60943b4aee56SMatthew G. Knepley     }
6095f9244615SMatthew G. Knepley   }
6096e5e52638SMatthew G. Knepley   /* Setup DSes */
6097e5e52638SMatthew G. Knepley   if (doSetup) {
609807218a29SMatthew G. Knepley     for (s = 0; s < dm->Nds; ++s) {
6099cf1363e4SMatthew G. Knepley       if (dm->setfromoptionscalled) {
6100cf1363e4SMatthew G. Knepley         PetscCall(PetscDSSetFromOptions(dm->probs[s].ds));
6101cf1363e4SMatthew G. Knepley         if (dm->probs[s].dsIn) PetscCall(PetscDSSetFromOptions(dm->probs[s].dsIn));
6102cf1363e4SMatthew G. Knepley       }
610307218a29SMatthew G. Knepley       PetscCall(PetscDSSetUp(dm->probs[s].ds));
610407218a29SMatthew G. Knepley       if (dm->probs[s].dsIn) PetscCall(PetscDSSetUp(dm->probs[s].dsIn));
610507218a29SMatthew G. Knepley     }
6106e5e52638SMatthew G. Knepley   }
61073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6108e5e52638SMatthew G. Knepley }
6109e5e52638SMatthew G. Knepley 
6110e5e52638SMatthew G. Knepley /*@
6111d2b2dc1eSMatthew G. Knepley   DMUseTensorOrder - Use a tensor product closure ordering for the default section
6112d2b2dc1eSMatthew G. Knepley 
6113d2b2dc1eSMatthew G. Knepley   Input Parameters:
6114d2b2dc1eSMatthew G. Knepley + dm     - The DM
6115d2b2dc1eSMatthew G. Knepley - tensor - Flag for tensor order
6116d2b2dc1eSMatthew G. Knepley 
6117d2b2dc1eSMatthew G. Knepley   Level: developer
6118d2b2dc1eSMatthew G. Knepley 
6119d2b2dc1eSMatthew G. Knepley .seealso: `DMPlexSetClosurePermutationTensor()`, `PetscSectionResetClosurePermutation()`
6120d2b2dc1eSMatthew G. Knepley @*/
6121d2b2dc1eSMatthew G. Knepley PetscErrorCode DMUseTensorOrder(DM dm, PetscBool tensor)
6122d2b2dc1eSMatthew G. Knepley {
6123d2b2dc1eSMatthew G. Knepley   PetscInt  Nf;
6124d2b2dc1eSMatthew G. Knepley   PetscBool reorder = PETSC_TRUE, isPlex;
6125d2b2dc1eSMatthew G. Knepley 
6126d2b2dc1eSMatthew G. Knepley   PetscFunctionBegin;
6127d2b2dc1eSMatthew G. Knepley   PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex));
6128d2b2dc1eSMatthew G. Knepley   PetscCall(DMGetNumFields(dm, &Nf));
6129d2b2dc1eSMatthew G. Knepley   for (PetscInt f = 0; f < Nf; ++f) {
6130d2b2dc1eSMatthew G. Knepley     PetscObject  obj;
6131d2b2dc1eSMatthew G. Knepley     PetscClassId id;
6132d2b2dc1eSMatthew G. Knepley 
6133d2b2dc1eSMatthew G. Knepley     PetscCall(DMGetField(dm, f, NULL, &obj));
6134d2b2dc1eSMatthew G. Knepley     PetscCall(PetscObjectGetClassId(obj, &id));
6135d2b2dc1eSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
6136d2b2dc1eSMatthew G. Knepley       PetscSpace sp;
6137d2b2dc1eSMatthew G. Knepley       PetscBool  tensor;
6138d2b2dc1eSMatthew G. Knepley 
6139d2b2dc1eSMatthew G. Knepley       PetscCall(PetscFEGetBasisSpace((PetscFE)obj, &sp));
6140d2b2dc1eSMatthew G. Knepley       PetscCall(PetscSpacePolynomialGetTensor(sp, &tensor));
6141d2b2dc1eSMatthew G. Knepley       reorder = reorder && tensor ? PETSC_TRUE : PETSC_FALSE;
6142d2b2dc1eSMatthew G. Knepley     } else reorder = PETSC_FALSE;
6143d2b2dc1eSMatthew G. Knepley   }
6144d2b2dc1eSMatthew G. Knepley   if (tensor) {
6145d2b2dc1eSMatthew G. Knepley     if (reorder && isPlex) PetscCall(DMPlexSetClosurePermutationTensor(dm, PETSC_DETERMINE, NULL));
6146d2b2dc1eSMatthew G. Knepley   } else {
6147d2b2dc1eSMatthew G. Knepley     PetscSection s;
6148d2b2dc1eSMatthew G. Knepley 
6149d2b2dc1eSMatthew G. Knepley     PetscCall(DMGetLocalSection(dm, &s));
6150d2b2dc1eSMatthew G. Knepley     if (s) PetscCall(PetscSectionResetClosurePermutation(s));
6151d2b2dc1eSMatthew G. Knepley   }
6152d2b2dc1eSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
6153d2b2dc1eSMatthew G. Knepley }
6154d2b2dc1eSMatthew G. Knepley 
6155d2b2dc1eSMatthew G. Knepley /*@
6156bb7acecfSBarry Smith   DMComputeExactSolution - Compute the exact solution for a given `DM`, using the `PetscDS` information.
61577f96f943SMatthew G. Knepley 
615820f4b53cSBarry Smith   Collective
6159f2cacb80SMatthew G. Knepley 
61607f96f943SMatthew G. Knepley   Input Parameters:
6161bb7acecfSBarry Smith + dm   - The `DM`
61627f96f943SMatthew G. Knepley - time - The time
61637f96f943SMatthew G. Knepley 
61647f96f943SMatthew G. Knepley   Output Parameters:
616520f4b53cSBarry Smith + u   - The vector will be filled with exact solution values, or `NULL`
616620f4b53cSBarry Smith - u_t - The vector will be filled with the time derivative of exact solution values, or `NULL`
616720f4b53cSBarry Smith 
616820f4b53cSBarry Smith   Level: developer
61697f96f943SMatthew G. Knepley 
6170bb7acecfSBarry Smith   Note:
6171bb7acecfSBarry Smith   The user must call `PetscDSSetExactSolution()` before using this routine
61727f96f943SMatthew G. Knepley 
61731cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscDSSetExactSolution()`
61747f96f943SMatthew G. Knepley @*/
6175d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeExactSolution(DM dm, PetscReal time, Vec u, Vec u_t)
6176d71ae5a4SJacob Faibussowitsch {
61777f96f943SMatthew G. Knepley   PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx);
61787f96f943SMatthew G. Knepley   void   **ectxs;
6179f60fa741SMatthew G. Knepley   Vec      locu, locu_t;
61807f96f943SMatthew G. Knepley   PetscInt Nf, Nds, s;
61817f96f943SMatthew G. Knepley 
61827f96f943SMatthew G. Knepley   PetscFunctionBegin;
6183f2cacb80SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6184f60fa741SMatthew G. Knepley   if (u) {
6185f60fa741SMatthew G. Knepley     PetscValidHeaderSpecific(u, VEC_CLASSID, 3);
6186f60fa741SMatthew G. Knepley     PetscCall(DMGetLocalVector(dm, &locu));
6187f60fa741SMatthew G. Knepley     PetscCall(VecSet(locu, 0.));
6188f60fa741SMatthew G. Knepley   }
6189f60fa741SMatthew G. Knepley   if (u_t) {
6190f60fa741SMatthew G. Knepley     PetscValidHeaderSpecific(u_t, VEC_CLASSID, 4);
6191f60fa741SMatthew G. Knepley     PetscCall(DMGetLocalVector(dm, &locu_t));
6192f60fa741SMatthew G. Knepley     PetscCall(VecSet(locu_t, 0.));
6193f60fa741SMatthew G. Knepley   }
61949566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
61959566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(Nf, &exacts, Nf, &ectxs));
61969566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
61977f96f943SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
61987f96f943SMatthew G. Knepley     PetscDS         ds;
61997f96f943SMatthew G. Knepley     DMLabel         label;
62007f96f943SMatthew G. Knepley     IS              fieldIS;
62017f96f943SMatthew G. Knepley     const PetscInt *fields, id = 1;
62027f96f943SMatthew G. Knepley     PetscInt        dsNf, f;
62037f96f943SMatthew G. Knepley 
620407218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL));
62059566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsNf));
62069566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(fieldIS, &fields));
62079566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(exacts, Nf));
62089566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ectxs, Nf));
6209f2cacb80SMatthew G. Knepley     if (u) {
6210f60fa741SMatthew G. Knepley       for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolution(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]]));
6211f60fa741SMatthew G. Knepley       if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu));
6212f60fa741SMatthew G. Knepley       else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu));
62137f96f943SMatthew G. Knepley     }
6214f2cacb80SMatthew G. Knepley     if (u_t) {
62159566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(exacts, Nf));
62169566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(ectxs, Nf));
6217f60fa741SMatthew G. Knepley       for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolutionTimeDerivative(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]]));
6218f60fa741SMatthew G. Knepley       if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu_t));
6219f60fa741SMatthew G. Knepley       else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu_t));
6220f2cacb80SMatthew G. Knepley     }
62219566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(fieldIS, &fields));
6222f2cacb80SMatthew G. Knepley   }
6223f2cacb80SMatthew G. Knepley   if (u) {
62249566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution"));
62259566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u, "exact_"));
6226f2cacb80SMatthew G. Knepley   }
6227f2cacb80SMatthew G. Knepley   if (u_t) {
62289566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution Time Derivative"));
62299566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u_t, "exact_t_"));
6230f2cacb80SMatthew G. Knepley   }
62319566063dSJacob Faibussowitsch   PetscCall(PetscFree2(exacts, ectxs));
6232f60fa741SMatthew G. Knepley   if (u) {
6233f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalBegin(dm, locu, INSERT_ALL_VALUES, u));
6234f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalEnd(dm, locu, INSERT_ALL_VALUES, u));
6235f60fa741SMatthew G. Knepley     PetscCall(DMRestoreLocalVector(dm, &locu));
6236f60fa741SMatthew G. Knepley   }
6237f60fa741SMatthew G. Knepley   if (u_t) {
6238f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalBegin(dm, locu_t, INSERT_ALL_VALUES, u_t));
6239f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalEnd(dm, locu_t, INSERT_ALL_VALUES, u_t));
6240f60fa741SMatthew G. Knepley     PetscCall(DMRestoreLocalVector(dm, &locu_t));
6241f60fa741SMatthew G. Knepley   }
62423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
62437f96f943SMatthew G. Knepley }
62447f96f943SMatthew G. Knepley 
624507218a29SMatthew G. Knepley static PetscErrorCode DMTransferDS_Internal(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn)
6246d71ae5a4SJacob Faibussowitsch {
624707218a29SMatthew G. Knepley   PetscDS dsNew, dsInNew = NULL;
624845480ffeSMatthew G. Knepley 
624945480ffeSMatthew G. Knepley   PetscFunctionBegin;
62509566063dSJacob Faibussowitsch   PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)ds), &dsNew));
625107218a29SMatthew G. Knepley   PetscCall(PetscDSCopy(ds, dm, dsNew));
625207218a29SMatthew G. Knepley   if (dsIn) {
625307218a29SMatthew G. Knepley     PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)dsIn), &dsInNew));
625407218a29SMatthew G. Knepley     PetscCall(PetscDSCopy(dsIn, dm, dsInNew));
625545480ffeSMatthew G. Knepley   }
625607218a29SMatthew G. Knepley   PetscCall(DMSetRegionDS(dm, label, fields, dsNew, dsInNew));
62579566063dSJacob Faibussowitsch   PetscCall(PetscDSDestroy(&dsNew));
625807218a29SMatthew G. Knepley   PetscCall(PetscDSDestroy(&dsInNew));
62593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
626045480ffeSMatthew G. Knepley }
626145480ffeSMatthew G. Knepley 
62627f96f943SMatthew G. Knepley /*@
6263bb7acecfSBarry Smith   DMCopyDS - Copy the discrete systems for the `DM` into another `DM`
6264e5e52638SMatthew G. Knepley 
626520f4b53cSBarry Smith   Collective
6266e5e52638SMatthew G. Knepley 
6267e5e52638SMatthew G. Knepley   Input Parameter:
6268bb7acecfSBarry Smith . dm - The `DM`
6269e5e52638SMatthew G. Knepley 
6270e5e52638SMatthew G. Knepley   Output Parameter:
6271bb7acecfSBarry Smith . newdm - The `DM`
6272e5e52638SMatthew G. Knepley 
6273e5e52638SMatthew G. Knepley   Level: advanced
6274e5e52638SMatthew G. Knepley 
62751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`
6276e5e52638SMatthew G. Knepley @*/
6277d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDS(DM dm, DM newdm)
6278d71ae5a4SJacob Faibussowitsch {
6279e5e52638SMatthew G. Knepley   PetscInt Nds, s;
6280e5e52638SMatthew G. Knepley 
6281e5e52638SMatthew G. Knepley   PetscFunctionBegin;
62823ba16761SJacob Faibussowitsch   if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS);
62839566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
62849566063dSJacob Faibussowitsch   PetscCall(DMClearDS(newdm));
6285e5e52638SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
6286e5e52638SMatthew G. Knepley     DMLabel  label;
6287b3cf3223SMatthew G. Knepley     IS       fields;
628807218a29SMatthew G. Knepley     PetscDS  ds, dsIn, newds;
6289783e2ec8SMatthew G. Knepley     PetscInt Nbd, bd;
6290e5e52638SMatthew G. Knepley 
629107218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fields, &ds, &dsIn));
6292b8025e53SMatthew G. Knepley     /* TODO: We need to change all keys from labels in the old DM to labels in the new DM */
629307218a29SMatthew G. Knepley     PetscCall(DMTransferDS_Internal(newdm, label, fields, ds, dsIn));
6294d5b43468SJose E. Roman     /* Complete new labels in the new DS */
629507218a29SMatthew G. Knepley     PetscCall(DMGetRegionDS(newdm, label, NULL, &newds, NULL));
62969566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumBoundary(newds, &Nbd));
6297783e2ec8SMatthew G. Knepley     for (bd = 0; bd < Nbd; ++bd) {
6298b8025e53SMatthew G. Knepley       PetscWeakForm wf;
629945480ffeSMatthew G. Knepley       DMLabel       label;
6300783e2ec8SMatthew G. Knepley       PetscInt      field;
6301783e2ec8SMatthew G. Knepley 
63029566063dSJacob Faibussowitsch       PetscCall(PetscDSGetBoundary(newds, bd, &wf, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL));
63039566063dSJacob Faibussowitsch       PetscCall(PetscWeakFormReplaceLabel(wf, label));
6304783e2ec8SMatthew G. Knepley     }
6305e5e52638SMatthew G. Knepley   }
6306799db056SMatthew G. Knepley   PetscCall(DMCompleteBCLabels_Internal(newdm));
63073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6308e5e52638SMatthew G. Knepley }
6309e5e52638SMatthew G. Knepley 
6310e5e52638SMatthew G. Knepley /*@
6311bb7acecfSBarry Smith   DMCopyDisc - Copy the fields and discrete systems for the `DM` into another `DM`
6312e5e52638SMatthew G. Knepley 
631320f4b53cSBarry Smith   Collective
6314e5e52638SMatthew G. Knepley 
6315e5e52638SMatthew G. Knepley   Input Parameter:
6316bb7acecfSBarry Smith . dm - The `DM`
6317e5e52638SMatthew G. Knepley 
6318e5e52638SMatthew G. Knepley   Output Parameter:
6319bb7acecfSBarry Smith . newdm - The `DM`
6320e5e52638SMatthew G. Knepley 
6321e5e52638SMatthew G. Knepley   Level: advanced
6322e5e52638SMatthew G. Knepley 
632373ff1848SBarry Smith   Developer Note:
6324bb7acecfSBarry Smith   Really ugly name, nothing in PETSc is called a `Disc` plus it is an ugly abbreviation
6325bb7acecfSBarry Smith 
63261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMCopyDS()`
6327e5e52638SMatthew G. Knepley @*/
6328d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDisc(DM dm, DM newdm)
6329d71ae5a4SJacob Faibussowitsch {
6330e5e52638SMatthew G. Knepley   PetscFunctionBegin;
63319566063dSJacob Faibussowitsch   PetscCall(DMCopyFields(dm, newdm));
63329566063dSJacob Faibussowitsch   PetscCall(DMCopyDS(dm, newdm));
63333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6334e5e52638SMatthew G. Knepley }
6335e5e52638SMatthew G. Knepley 
6336c73cfb54SMatthew G. Knepley /*@
6337bb7acecfSBarry Smith   DMGetDimension - Return the topological dimension of the `DM`
6338c73cfb54SMatthew G. Knepley 
633920f4b53cSBarry Smith   Not Collective
6340c73cfb54SMatthew G. Knepley 
6341c73cfb54SMatthew G. Knepley   Input Parameter:
6342bb7acecfSBarry Smith . dm - The `DM`
6343c73cfb54SMatthew G. Knepley 
6344c73cfb54SMatthew G. Knepley   Output Parameter:
6345c73cfb54SMatthew G. Knepley . dim - The topological dimension
6346c73cfb54SMatthew G. Knepley 
6347c73cfb54SMatthew G. Knepley   Level: beginner
6348c73cfb54SMatthew G. Knepley 
63491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDimension()`, `DMCreate()`
6350c73cfb54SMatthew G. Knepley @*/
6351d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimension(DM dm, PetscInt *dim)
6352d71ae5a4SJacob Faibussowitsch {
6353c73cfb54SMatthew G. Knepley   PetscFunctionBegin;
6354c73cfb54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
63554f572ea9SToby Isaac   PetscAssertPointer(dim, 2);
6356c73cfb54SMatthew G. Knepley   *dim = dm->dim;
63573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6358c73cfb54SMatthew G. Knepley }
6359c73cfb54SMatthew G. Knepley 
6360c73cfb54SMatthew G. Knepley /*@
6361bb7acecfSBarry Smith   DMSetDimension - Set the topological dimension of the `DM`
6362c73cfb54SMatthew G. Knepley 
636320f4b53cSBarry Smith   Collective
6364c73cfb54SMatthew G. Knepley 
6365c73cfb54SMatthew G. Knepley   Input Parameters:
6366bb7acecfSBarry Smith + dm  - The `DM`
6367c73cfb54SMatthew G. Knepley - dim - The topological dimension
6368c73cfb54SMatthew G. Knepley 
6369c73cfb54SMatthew G. Knepley   Level: beginner
6370c73cfb54SMatthew G. Knepley 
63711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDimension()`, `DMCreate()`
6372c73cfb54SMatthew G. Knepley @*/
6373d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDimension(DM dm, PetscInt dim)
6374d71ae5a4SJacob Faibussowitsch {
6375e5e52638SMatthew G. Knepley   PetscDS  ds;
637645480ffeSMatthew G. Knepley   PetscInt Nds, n;
6377f17e8794SMatthew G. Knepley 
6378c73cfb54SMatthew G. Knepley   PetscFunctionBegin;
6379c73cfb54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6380c73cfb54SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, dim, 2);
6381c73cfb54SMatthew G. Knepley   dm->dim = dim;
6382d17bd122SMatthew G. Knepley   if (dm->dim >= 0) {
63839566063dSJacob Faibussowitsch     PetscCall(DMGetNumDS(dm, &Nds));
638445480ffeSMatthew G. Knepley     for (n = 0; n < Nds; ++n) {
638507218a29SMatthew G. Knepley       PetscCall(DMGetRegionNumDS(dm, n, NULL, NULL, &ds, NULL));
63869566063dSJacob Faibussowitsch       if (ds->dimEmbed < 0) PetscCall(PetscDSSetCoordinateDimension(ds, dim));
638745480ffeSMatthew G. Knepley     }
6388d17bd122SMatthew G. Knepley   }
63893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6390c73cfb54SMatthew G. Knepley }
6391c73cfb54SMatthew G. Knepley 
6392793f3fe5SMatthew G. Knepley /*@
6393793f3fe5SMatthew G. Knepley   DMGetDimPoints - Get the half-open interval for all points of a given dimension
6394793f3fe5SMatthew G. Knepley 
639520f4b53cSBarry Smith   Collective
6396793f3fe5SMatthew G. Knepley 
6397793f3fe5SMatthew G. Knepley   Input Parameters:
6398bb7acecfSBarry Smith + dm  - the `DM`
6399793f3fe5SMatthew G. Knepley - dim - the dimension
6400793f3fe5SMatthew G. Knepley 
6401793f3fe5SMatthew G. Knepley   Output Parameters:
6402793f3fe5SMatthew G. Knepley + pStart - The first point of the given dimension
6403aa049354SPatrick Sanan - pEnd   - The first point following points of the given dimension
6404793f3fe5SMatthew G. Knepley 
640520f4b53cSBarry Smith   Level: intermediate
640620f4b53cSBarry Smith 
6407793f3fe5SMatthew G. Knepley   Note:
6408793f3fe5SMatthew G. Knepley   The points are vertices in the Hasse diagram encoding the topology. This is explained in
6409a8d69d7bSBarry Smith   https://arxiv.org/abs/0908.4427. If no points exist of this dimension in the storage scheme,
6410793f3fe5SMatthew G. Knepley   then the interval is empty.
6411793f3fe5SMatthew G. Knepley 
64121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPLEX`, `DMPlexGetDepthStratum()`, `DMPlexGetHeightStratum()`
6413793f3fe5SMatthew G. Knepley @*/
6414d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimPoints(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd)
6415d71ae5a4SJacob Faibussowitsch {
6416793f3fe5SMatthew G. Knepley   PetscInt d;
6417793f3fe5SMatthew G. Knepley 
6418793f3fe5SMatthew G. Knepley   PetscFunctionBegin;
6419793f3fe5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
64209566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &d));
64217a8be351SBarry Smith   PetscCheck((dim >= 0) && (dim <= d), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %" PetscInt_FMT, dim);
6422dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, getdimpoints, dim, pStart, pEnd);
64233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6424793f3fe5SMatthew G. Knepley }
6425793f3fe5SMatthew G. Knepley 
64266636e97aSMatthew G Knepley /*@
6427bb7acecfSBarry Smith   DMGetOutputDM - Retrieve the `DM` associated with the layout for output
6428f4d763aaSMatthew G. Knepley 
642920f4b53cSBarry Smith   Collective
64308f700142SStefano Zampini 
6431f4d763aaSMatthew G. Knepley   Input Parameter:
6432bb7acecfSBarry Smith . dm - The original `DM`
6433f4d763aaSMatthew G. Knepley 
6434f4d763aaSMatthew G. Knepley   Output Parameter:
6435bb7acecfSBarry Smith . odm - The `DM` which provides the layout for output
6436f4d763aaSMatthew G. Knepley 
6437f4d763aaSMatthew G. Knepley   Level: intermediate
6438f4d763aaSMatthew G. Knepley 
6439bb7acecfSBarry Smith   Note:
6440bb7acecfSBarry Smith   In some situations the vector obtained with `DMCreateGlobalVector()` excludes points for degrees of freedom that are associated with fixed (Dirichelet) boundary
6441bb7acecfSBarry Smith   conditions since the algebraic solver does not solve for those variables. The output `DM` includes these excluded points and its global vector contains the
6442bb7acecfSBarry Smith   locations for those dof so that they can be output to a file or other viewer along with the unconstrained dof.
6443bb7acecfSBarry Smith 
64441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`, `DMGetGlobalSection()`, `DMCreateGlobalVector()`, `PetscSectionHasConstraints()`, `DMSetGlobalSection()`
6445f4d763aaSMatthew G. Knepley @*/
6446d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputDM(DM dm, DM *odm)
6447d71ae5a4SJacob Faibussowitsch {
6448c26acbdeSMatthew G. Knepley   PetscSection section;
6449eb9d3e4dSMatthew G. Knepley   IS           perm;
6450eb9d3e4dSMatthew G. Knepley   PetscBool    hasConstraints, newDM, gnewDM;
645114f150ffSMatthew G. Knepley 
645214f150ffSMatthew G. Knepley   PetscFunctionBegin;
645314f150ffSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
64544f572ea9SToby Isaac   PetscAssertPointer(odm, 2);
64559566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
64569566063dSJacob Faibussowitsch   PetscCall(PetscSectionHasConstraints(section, &hasConstraints));
6457eb9d3e4dSMatthew G. Knepley   PetscCall(PetscSectionGetPermutation(section, &perm));
6458eb9d3e4dSMatthew G. Knepley   newDM = hasConstraints || perm ? PETSC_TRUE : PETSC_FALSE;
6459eb9d3e4dSMatthew G. Knepley   PetscCall(MPIU_Allreduce(&newDM, &gnewDM, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm)));
6460eb9d3e4dSMatthew G. Knepley   if (!gnewDM) {
6461c26acbdeSMatthew G. Knepley     *odm = dm;
64623ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
6463c26acbdeSMatthew G. Knepley   }
646414f150ffSMatthew G. Knepley   if (!dm->dmBC) {
6465c26acbdeSMatthew G. Knepley     PetscSection newSection, gsection;
646614f150ffSMatthew G. Knepley     PetscSF      sf;
6467eb9d3e4dSMatthew G. Knepley     PetscBool    usePerm = dm->ignorePermOutput ? PETSC_FALSE : PETSC_TRUE;
646814f150ffSMatthew G. Knepley 
64699566063dSJacob Faibussowitsch     PetscCall(DMClone(dm, &dm->dmBC));
64709566063dSJacob Faibussowitsch     PetscCall(DMCopyDisc(dm, dm->dmBC));
64719566063dSJacob Faibussowitsch     PetscCall(PetscSectionClone(section, &newSection));
64729566063dSJacob Faibussowitsch     PetscCall(DMSetLocalSection(dm->dmBC, newSection));
64739566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&newSection));
64749566063dSJacob Faibussowitsch     PetscCall(DMGetPointSF(dm->dmBC, &sf));
6475eb9d3e4dSMatthew G. Knepley     PetscCall(PetscSectionCreateGlobalSection(section, sf, usePerm, PETSC_TRUE, PETSC_FALSE, &gsection));
64769566063dSJacob Faibussowitsch     PetscCall(DMSetGlobalSection(dm->dmBC, gsection));
64779566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&gsection));
647814f150ffSMatthew G. Knepley   }
647914f150ffSMatthew G. Knepley   *odm = dm->dmBC;
64803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
648114f150ffSMatthew G. Knepley }
6482f4d763aaSMatthew G. Knepley 
6483f4d763aaSMatthew G. Knepley /*@
6484cdb7a50dSMatthew G. Knepley   DMGetOutputSequenceNumber - Retrieve the sequence number/value for output
6485f4d763aaSMatthew G. Knepley 
6486f4d763aaSMatthew G. Knepley   Input Parameter:
6487bb7acecfSBarry Smith . dm - The original `DM`
6488f4d763aaSMatthew G. Knepley 
6489cdb7a50dSMatthew G. Knepley   Output Parameters:
6490cdb7a50dSMatthew G. Knepley + num - The output sequence number
6491cdb7a50dSMatthew G. Knepley - val - The output sequence value
6492f4d763aaSMatthew G. Knepley 
6493f4d763aaSMatthew G. Knepley   Level: intermediate
6494f4d763aaSMatthew G. Knepley 
6495bb7acecfSBarry Smith   Note:
6496bb7acecfSBarry Smith   This is intended for output that should appear in sequence, for instance
6497bb7acecfSBarry Smith   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6498bb7acecfSBarry Smith 
649973ff1848SBarry Smith   Developer Note:
6500bb7acecfSBarry Smith   The `DM` serves as a convenient place to store the current iteration value. The iteration is not
6501bb7acecfSBarry Smith   not directly related to the `DM`.
6502f4d763aaSMatthew G. Knepley 
65031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`
6504f4d763aaSMatthew G. Knepley @*/
6505d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputSequenceNumber(DM dm, PetscInt *num, PetscReal *val)
6506d71ae5a4SJacob Faibussowitsch {
6507f4d763aaSMatthew G. Knepley   PetscFunctionBegin;
6508f4d763aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
65099371c9d4SSatish Balay   if (num) {
65104f572ea9SToby Isaac     PetscAssertPointer(num, 2);
65119371c9d4SSatish Balay     *num = dm->outputSequenceNum;
65129371c9d4SSatish Balay   }
65139371c9d4SSatish Balay   if (val) {
65144f572ea9SToby Isaac     PetscAssertPointer(val, 3);
65159371c9d4SSatish Balay     *val = dm->outputSequenceVal;
65169371c9d4SSatish Balay   }
65173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6518f4d763aaSMatthew G. Knepley }
6519f4d763aaSMatthew G. Knepley 
6520f4d763aaSMatthew G. Knepley /*@
6521cdb7a50dSMatthew G. Knepley   DMSetOutputSequenceNumber - Set the sequence number/value for output
6522f4d763aaSMatthew G. Knepley 
6523f4d763aaSMatthew G. Knepley   Input Parameters:
6524bb7acecfSBarry Smith + dm  - The original `DM`
6525cdb7a50dSMatthew G. Knepley . num - The output sequence number
6526cdb7a50dSMatthew G. Knepley - val - The output sequence value
6527f4d763aaSMatthew G. Knepley 
6528f4d763aaSMatthew G. Knepley   Level: intermediate
6529f4d763aaSMatthew G. Knepley 
6530bb7acecfSBarry Smith   Note:
6531bb7acecfSBarry Smith   This is intended for output that should appear in sequence, for instance
6532bb7acecfSBarry Smith   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6533f4d763aaSMatthew G. Knepley 
65341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`
6535f4d763aaSMatthew G. Knepley @*/
6536d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOutputSequenceNumber(DM dm, PetscInt num, PetscReal val)
6537d71ae5a4SJacob Faibussowitsch {
6538f4d763aaSMatthew G. Knepley   PetscFunctionBegin;
6539f4d763aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6540f4d763aaSMatthew G. Knepley   dm->outputSequenceNum = num;
6541cdb7a50dSMatthew G. Knepley   dm->outputSequenceVal = val;
65423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6543cdb7a50dSMatthew G. Knepley }
6544cdb7a50dSMatthew G. Knepley 
6545cdb7a50dSMatthew G. Knepley /*@C
6546bb7acecfSBarry Smith   DMOutputSequenceLoad - Retrieve the sequence value from a `PetscViewer`
6547cdb7a50dSMatthew G. Knepley 
6548cdb7a50dSMatthew G. Knepley   Input Parameters:
6549bb7acecfSBarry Smith + dm     - The original `DM`
6550a4e35b19SJacob Faibussowitsch . viewer - The viewer to get it from
6551cdb7a50dSMatthew G. Knepley . name   - The sequence name
6552cdb7a50dSMatthew G. Knepley - num    - The output sequence number
6553cdb7a50dSMatthew G. Knepley 
6554cdb7a50dSMatthew G. Knepley   Output Parameter:
6555cdb7a50dSMatthew G. Knepley . val - The output sequence value
6556cdb7a50dSMatthew G. Knepley 
6557cdb7a50dSMatthew G. Knepley   Level: intermediate
6558cdb7a50dSMatthew G. Knepley 
6559bb7acecfSBarry Smith   Note:
6560bb7acecfSBarry Smith   This is intended for output that should appear in sequence, for instance
6561bb7acecfSBarry Smith   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6562bb7acecfSBarry Smith 
656373ff1848SBarry Smith   Developer Note:
6564bb7acecfSBarry Smith   It is unclear at the user API level why a `DM` is needed as input
6565cdb7a50dSMatthew G. Knepley 
65661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()`
6567cdb7a50dSMatthew G. Knepley @*/
6568d71ae5a4SJacob Faibussowitsch PetscErrorCode DMOutputSequenceLoad(DM dm, PetscViewer viewer, const char *name, PetscInt num, PetscReal *val)
6569d71ae5a4SJacob Faibussowitsch {
6570cdb7a50dSMatthew G. Knepley   PetscBool ishdf5;
6571cdb7a50dSMatthew G. Knepley 
6572cdb7a50dSMatthew G. Knepley   PetscFunctionBegin;
6573cdb7a50dSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6574cdb7a50dSMatthew G. Knepley   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
65754f572ea9SToby Isaac   PetscAssertPointer(val, 5);
65769566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
6577cdb7a50dSMatthew G. Knepley   if (ishdf5) {
6578cdb7a50dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5)
6579cdb7a50dSMatthew G. Knepley     PetscScalar value;
6580cdb7a50dSMatthew G. Knepley 
65819566063dSJacob Faibussowitsch     PetscCall(DMSequenceLoad_HDF5_Internal(dm, name, num, &value, viewer));
65824aeb217fSMatthew G. Knepley     *val = PetscRealPart(value);
6583cdb7a50dSMatthew G. Knepley #endif
6584cdb7a50dSMatthew G. Knepley   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()");
65853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6586f4d763aaSMatthew G. Knepley }
65878e4ac7eaSMatthew G. Knepley 
65888e4ac7eaSMatthew G. Knepley /*@
6589bb7acecfSBarry Smith   DMGetUseNatural - Get the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel
65908e4ac7eaSMatthew G. Knepley 
659120f4b53cSBarry Smith   Not Collective
65928e4ac7eaSMatthew G. Knepley 
65938e4ac7eaSMatthew G. Knepley   Input Parameter:
6594bb7acecfSBarry Smith . dm - The `DM`
65958e4ac7eaSMatthew G. Knepley 
65968e4ac7eaSMatthew G. Knepley   Output Parameter:
6597bb7acecfSBarry Smith . useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution
65988e4ac7eaSMatthew G. Knepley 
65998e4ac7eaSMatthew G. Knepley   Level: beginner
66008e4ac7eaSMatthew G. Knepley 
66011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetUseNatural()`, `DMCreate()`
66028e4ac7eaSMatthew G. Knepley @*/
6603d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetUseNatural(DM dm, PetscBool *useNatural)
6604d71ae5a4SJacob Faibussowitsch {
66058e4ac7eaSMatthew G. Knepley   PetscFunctionBegin;
66068e4ac7eaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
66074f572ea9SToby Isaac   PetscAssertPointer(useNatural, 2);
66088e4ac7eaSMatthew G. Knepley   *useNatural = dm->useNatural;
66093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
66108e4ac7eaSMatthew G. Knepley }
66118e4ac7eaSMatthew G. Knepley 
66128e4ac7eaSMatthew G. Knepley /*@
6613bb7acecfSBarry Smith   DMSetUseNatural - Set the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel
66148e4ac7eaSMatthew G. Knepley 
661520f4b53cSBarry Smith   Collective
66168e4ac7eaSMatthew G. Knepley 
66178e4ac7eaSMatthew G. Knepley   Input Parameters:
6618bb7acecfSBarry Smith + dm         - The `DM`
6619bb7acecfSBarry Smith - useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution
66208e4ac7eaSMatthew G. Knepley 
662173ff1848SBarry Smith   Level: beginner
662273ff1848SBarry Smith 
6623bb7acecfSBarry Smith   Note:
6624bb7acecfSBarry Smith   This also causes the map to be build after `DMCreateSubDM()` and `DMCreateSuperDM()`
66255d3b26e6SMatthew G. Knepley 
66261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetUseNatural()`, `DMCreate()`, `DMPlexDistribute()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
66278e4ac7eaSMatthew G. Knepley @*/
6628d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUseNatural(DM dm, PetscBool useNatural)
6629d71ae5a4SJacob Faibussowitsch {
66308e4ac7eaSMatthew G. Knepley   PetscFunctionBegin;
66318e4ac7eaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
66328833efb5SBlaise Bourdin   PetscValidLogicalCollectiveBool(dm, useNatural, 2);
66338e4ac7eaSMatthew G. Knepley   dm->useNatural = useNatural;
66343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
66358e4ac7eaSMatthew G. Knepley }
6636c58f1c22SToby Isaac 
6637c58f1c22SToby Isaac /*@C
6638bb7acecfSBarry Smith   DMCreateLabel - Create a label of the given name if it does not already exist in the `DM`
6639c58f1c22SToby Isaac 
6640c58f1c22SToby Isaac   Not Collective
6641c58f1c22SToby Isaac 
6642c58f1c22SToby Isaac   Input Parameters:
6643bb7acecfSBarry Smith + dm   - The `DM` object
6644c58f1c22SToby Isaac - name - The label name
6645c58f1c22SToby Isaac 
6646c58f1c22SToby Isaac   Level: intermediate
6647c58f1c22SToby Isaac 
66481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6649c58f1c22SToby Isaac @*/
6650d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabel(DM dm, const char name[])
6651d71ae5a4SJacob Faibussowitsch {
66525d80c0bfSVaclav Hapla   PetscBool flg;
66535d80c0bfSVaclav Hapla   DMLabel   label;
6654c58f1c22SToby Isaac 
6655c58f1c22SToby Isaac   PetscFunctionBegin;
6656c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
66574f572ea9SToby Isaac   PetscAssertPointer(name, 2);
66589566063dSJacob Faibussowitsch   PetscCall(DMHasLabel(dm, name, &flg));
6659c58f1c22SToby Isaac   if (!flg) {
66609566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label));
66619566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dm, label));
66629566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&label));
6663c58f1c22SToby Isaac   }
66643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6665c58f1c22SToby Isaac }
6666c58f1c22SToby Isaac 
6667c58f1c22SToby Isaac /*@C
6668bb7acecfSBarry Smith   DMCreateLabelAtIndex - Create a label of the given name at the given index. If it already exists in the `DM`, move it to this index.
66690fdc7489SMatthew Knepley 
66700fdc7489SMatthew Knepley   Not Collective
66710fdc7489SMatthew Knepley 
66720fdc7489SMatthew Knepley   Input Parameters:
6673bb7acecfSBarry Smith + dm   - The `DM` object
66740fdc7489SMatthew Knepley . l    - The index for the label
66750fdc7489SMatthew Knepley - name - The label name
66760fdc7489SMatthew Knepley 
66770fdc7489SMatthew Knepley   Level: intermediate
66780fdc7489SMatthew Knepley 
66791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateLabel()`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
66800fdc7489SMatthew Knepley @*/
6681d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabelAtIndex(DM dm, PetscInt l, const char name[])
6682d71ae5a4SJacob Faibussowitsch {
66830fdc7489SMatthew Knepley   DMLabelLink orig, prev = NULL;
66840fdc7489SMatthew Knepley   DMLabel     label;
66850fdc7489SMatthew Knepley   PetscInt    Nl, m;
66860fdc7489SMatthew Knepley   PetscBool   flg, match;
66870fdc7489SMatthew Knepley   const char *lname;
66880fdc7489SMatthew Knepley 
66890fdc7489SMatthew Knepley   PetscFunctionBegin;
66900fdc7489SMatthew Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
66914f572ea9SToby Isaac   PetscAssertPointer(name, 3);
66929566063dSJacob Faibussowitsch   PetscCall(DMHasLabel(dm, name, &flg));
66930fdc7489SMatthew Knepley   if (!flg) {
66949566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label));
66959566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dm, label));
66969566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&label));
66970fdc7489SMatthew Knepley   }
66989566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(dm, &Nl));
669963a3b9bcSJacob Faibussowitsch   PetscCheck(l < Nl, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label index %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", l, Nl);
67000fdc7489SMatthew Knepley   for (m = 0, orig = dm->labels; m < Nl; ++m, prev = orig, orig = orig->next) {
67019566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)orig->label, &lname));
67029566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &match));
67030fdc7489SMatthew Knepley     if (match) break;
67040fdc7489SMatthew Knepley   }
67053ba16761SJacob Faibussowitsch   if (m == l) PetscFunctionReturn(PETSC_SUCCESS);
67060fdc7489SMatthew Knepley   if (!m) dm->labels = orig->next;
67070fdc7489SMatthew Knepley   else prev->next = orig->next;
67080fdc7489SMatthew Knepley   if (!l) {
67090fdc7489SMatthew Knepley     orig->next = dm->labels;
67100fdc7489SMatthew Knepley     dm->labels = orig;
67110fdc7489SMatthew Knepley   } else {
6712fbccb6d4SPierre Jolivet     for (m = 0, prev = dm->labels; m < l - 1; ++m, prev = prev->next);
67130fdc7489SMatthew Knepley     orig->next = prev->next;
67140fdc7489SMatthew Knepley     prev->next = orig;
67150fdc7489SMatthew Knepley   }
67163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
67170fdc7489SMatthew Knepley }
67180fdc7489SMatthew Knepley 
67190fdc7489SMatthew Knepley /*@C
6720bb7acecfSBarry Smith   DMGetLabelValue - Get the value in a `DMLabel` for the given point, with -1 as the default
6721c58f1c22SToby Isaac 
6722c58f1c22SToby Isaac   Not Collective
6723c58f1c22SToby Isaac 
6724c58f1c22SToby Isaac   Input Parameters:
6725bb7acecfSBarry Smith + dm    - The `DM` object
6726c58f1c22SToby Isaac . name  - The label name
6727c58f1c22SToby Isaac - point - The mesh point
6728c58f1c22SToby Isaac 
6729c58f1c22SToby Isaac   Output Parameter:
6730c58f1c22SToby Isaac . value - The label value for this point, or -1 if the point is not in the label
6731c58f1c22SToby Isaac 
6732c58f1c22SToby Isaac   Level: beginner
6733c58f1c22SToby Isaac 
67341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6735c58f1c22SToby Isaac @*/
6736d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelValue(DM dm, const char name[], PetscInt point, PetscInt *value)
6737d71ae5a4SJacob Faibussowitsch {
6738c58f1c22SToby Isaac   DMLabel label;
6739c58f1c22SToby Isaac 
6740c58f1c22SToby Isaac   PetscFunctionBegin;
6741c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
67424f572ea9SToby Isaac   PetscAssertPointer(name, 2);
67439566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
67447a8be351SBarry Smith   PetscCheck(label, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No label named %s was found", name);
67459566063dSJacob Faibussowitsch   PetscCall(DMLabelGetValue(label, point, value));
67463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6747c58f1c22SToby Isaac }
6748c58f1c22SToby Isaac 
6749c58f1c22SToby Isaac /*@C
6750bb7acecfSBarry Smith   DMSetLabelValue - Add a point to a `DMLabel` with given value
6751c58f1c22SToby Isaac 
6752c58f1c22SToby Isaac   Not Collective
6753c58f1c22SToby Isaac 
6754c58f1c22SToby Isaac   Input Parameters:
6755bb7acecfSBarry Smith + dm    - The `DM` object
6756c58f1c22SToby Isaac . name  - The label name
6757c58f1c22SToby Isaac . point - The mesh point
6758c58f1c22SToby Isaac - value - The label value for this point
6759c58f1c22SToby Isaac 
6760c58f1c22SToby Isaac   Output Parameter:
6761c58f1c22SToby Isaac 
6762c58f1c22SToby Isaac   Level: beginner
6763c58f1c22SToby Isaac 
67641cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelSetValue()`, `DMGetStratumIS()`, `DMClearLabelValue()`
6765c58f1c22SToby Isaac @*/
6766d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue(DM dm, const char name[], PetscInt point, PetscInt value)
6767d71ae5a4SJacob Faibussowitsch {
6768c58f1c22SToby Isaac   DMLabel label;
6769c58f1c22SToby Isaac 
6770c58f1c22SToby Isaac   PetscFunctionBegin;
6771c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
67724f572ea9SToby Isaac   PetscAssertPointer(name, 2);
67739566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6774c58f1c22SToby Isaac   if (!label) {
67759566063dSJacob Faibussowitsch     PetscCall(DMCreateLabel(dm, name));
67769566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, name, &label));
6777c58f1c22SToby Isaac   }
67789566063dSJacob Faibussowitsch   PetscCall(DMLabelSetValue(label, point, value));
67793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6780c58f1c22SToby Isaac }
6781c58f1c22SToby Isaac 
6782c58f1c22SToby Isaac /*@C
6783bb7acecfSBarry Smith   DMClearLabelValue - Remove a point from a `DMLabel` with given value
6784c58f1c22SToby Isaac 
6785c58f1c22SToby Isaac   Not Collective
6786c58f1c22SToby Isaac 
6787c58f1c22SToby Isaac   Input Parameters:
6788bb7acecfSBarry Smith + dm    - The `DM` object
6789c58f1c22SToby Isaac . name  - The label name
6790c58f1c22SToby Isaac . point - The mesh point
6791c58f1c22SToby Isaac - value - The label value for this point
6792c58f1c22SToby Isaac 
6793c58f1c22SToby Isaac   Level: beginner
6794c58f1c22SToby Isaac 
67951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelClearValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6796c58f1c22SToby Isaac @*/
6797d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelValue(DM dm, const char name[], PetscInt point, PetscInt value)
6798d71ae5a4SJacob Faibussowitsch {
6799c58f1c22SToby Isaac   DMLabel label;
6800c58f1c22SToby Isaac 
6801c58f1c22SToby Isaac   PetscFunctionBegin;
6802c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
68034f572ea9SToby Isaac   PetscAssertPointer(name, 2);
68049566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
68053ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
68069566063dSJacob Faibussowitsch   PetscCall(DMLabelClearValue(label, point, value));
68073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6808c58f1c22SToby Isaac }
6809c58f1c22SToby Isaac 
6810c58f1c22SToby Isaac /*@C
6811bb7acecfSBarry Smith   DMGetLabelSize - Get the value of `DMLabelGetNumValues()` of a `DMLabel` in the `DM`
6812c58f1c22SToby Isaac 
6813c58f1c22SToby Isaac   Not Collective
6814c58f1c22SToby Isaac 
6815c58f1c22SToby Isaac   Input Parameters:
6816bb7acecfSBarry Smith + dm   - The `DM` object
6817c58f1c22SToby Isaac - name - The label name
6818c58f1c22SToby Isaac 
6819c58f1c22SToby Isaac   Output Parameter:
6820c58f1c22SToby Isaac . size - The number of different integer ids, or 0 if the label does not exist
6821c58f1c22SToby Isaac 
6822c58f1c22SToby Isaac   Level: beginner
6823c58f1c22SToby Isaac 
682473ff1848SBarry Smith   Developer Note:
6825bb7acecfSBarry Smith   This should be renamed to something like `DMGetLabelNumValues()` or removed.
6826bb7acecfSBarry Smith 
68271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetNumValues()`, `DMSetLabelValue()`, `DMGetLabel()`
6828c58f1c22SToby Isaac @*/
6829d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelSize(DM dm, const char name[], PetscInt *size)
6830d71ae5a4SJacob Faibussowitsch {
6831c58f1c22SToby Isaac   DMLabel label;
6832c58f1c22SToby Isaac 
6833c58f1c22SToby Isaac   PetscFunctionBegin;
6834c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
68354f572ea9SToby Isaac   PetscAssertPointer(name, 2);
68364f572ea9SToby Isaac   PetscAssertPointer(size, 3);
68379566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6838c58f1c22SToby Isaac   *size = 0;
68393ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
68409566063dSJacob Faibussowitsch   PetscCall(DMLabelGetNumValues(label, size));
68413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6842c58f1c22SToby Isaac }
6843c58f1c22SToby Isaac 
6844c58f1c22SToby Isaac /*@C
6845bb7acecfSBarry Smith   DMGetLabelIdIS - Get the `DMLabelGetValueIS()` from a `DMLabel` in the `DM`
6846c58f1c22SToby Isaac 
6847c58f1c22SToby Isaac   Not Collective
6848c58f1c22SToby Isaac 
6849c58f1c22SToby Isaac   Input Parameters:
685060225df5SJacob Faibussowitsch + dm   - The `DM` object
6851c58f1c22SToby Isaac - name - The label name
6852c58f1c22SToby Isaac 
6853c58f1c22SToby Isaac   Output Parameter:
685420f4b53cSBarry Smith . ids - The integer ids, or `NULL` if the label does not exist
6855c58f1c22SToby Isaac 
6856c58f1c22SToby Isaac   Level: beginner
6857c58f1c22SToby Isaac 
68581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValueIS()`, `DMGetLabelSize()`
6859c58f1c22SToby Isaac @*/
6860d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelIdIS(DM dm, const char name[], IS *ids)
6861d71ae5a4SJacob Faibussowitsch {
6862c58f1c22SToby Isaac   DMLabel label;
6863c58f1c22SToby Isaac 
6864c58f1c22SToby Isaac   PetscFunctionBegin;
6865c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
68664f572ea9SToby Isaac   PetscAssertPointer(name, 2);
68674f572ea9SToby Isaac   PetscAssertPointer(ids, 3);
68689566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6869c58f1c22SToby Isaac   *ids = NULL;
6870dab2e251SBlaise Bourdin   if (label) {
68719566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValueIS(label, ids));
6872dab2e251SBlaise Bourdin   } else {
6873dab2e251SBlaise Bourdin     /* returning an empty IS */
68749566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_USE_POINTER, ids));
6875dab2e251SBlaise Bourdin   }
68763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6877c58f1c22SToby Isaac }
6878c58f1c22SToby Isaac 
6879c58f1c22SToby Isaac /*@C
6880c58f1c22SToby Isaac   DMGetStratumSize - Get the number of points in a label stratum
6881c58f1c22SToby Isaac 
6882c58f1c22SToby Isaac   Not Collective
6883c58f1c22SToby Isaac 
6884c58f1c22SToby Isaac   Input Parameters:
6885bb7acecfSBarry Smith + dm    - The `DM` object
6886c58f1c22SToby Isaac . name  - The label name
6887c58f1c22SToby Isaac - value - The stratum value
6888c58f1c22SToby Isaac 
6889c58f1c22SToby Isaac   Output Parameter:
6890bb7acecfSBarry Smith . size - The number of points, also called the stratum size
6891c58f1c22SToby Isaac 
6892c58f1c22SToby Isaac   Level: beginner
6893c58f1c22SToby Isaac 
68941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumSize()`, `DMGetLabelSize()`, `DMGetLabelIds()`
6895c58f1c22SToby Isaac @*/
6896d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumSize(DM dm, const char name[], PetscInt value, PetscInt *size)
6897d71ae5a4SJacob Faibussowitsch {
6898c58f1c22SToby Isaac   DMLabel label;
6899c58f1c22SToby Isaac 
6900c58f1c22SToby Isaac   PetscFunctionBegin;
6901c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
69024f572ea9SToby Isaac   PetscAssertPointer(name, 2);
69034f572ea9SToby Isaac   PetscAssertPointer(size, 4);
69049566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6905c58f1c22SToby Isaac   *size = 0;
69063ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
69079566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumSize(label, value, size));
69083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6909c58f1c22SToby Isaac }
6910c58f1c22SToby Isaac 
6911c58f1c22SToby Isaac /*@C
6912c58f1c22SToby Isaac   DMGetStratumIS - Get the points in a label stratum
6913c58f1c22SToby Isaac 
6914c58f1c22SToby Isaac   Not Collective
6915c58f1c22SToby Isaac 
6916c58f1c22SToby Isaac   Input Parameters:
6917bb7acecfSBarry Smith + dm    - The `DM` object
6918c58f1c22SToby Isaac . name  - The label name
6919c58f1c22SToby Isaac - value - The stratum value
6920c58f1c22SToby Isaac 
6921c58f1c22SToby Isaac   Output Parameter:
692220f4b53cSBarry Smith . points - The stratum points, or `NULL` if the label does not exist or does not have that value
6923c58f1c22SToby Isaac 
6924c58f1c22SToby Isaac   Level: beginner
6925c58f1c22SToby Isaac 
69261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumIS()`, `DMGetStratumSize()`
6927c58f1c22SToby Isaac @*/
6928d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumIS(DM dm, const char name[], PetscInt value, IS *points)
6929d71ae5a4SJacob Faibussowitsch {
6930c58f1c22SToby Isaac   DMLabel label;
6931c58f1c22SToby Isaac 
6932c58f1c22SToby Isaac   PetscFunctionBegin;
6933c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
69344f572ea9SToby Isaac   PetscAssertPointer(name, 2);
69354f572ea9SToby Isaac   PetscAssertPointer(points, 4);
69369566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6937c58f1c22SToby Isaac   *points = NULL;
69383ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
69399566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(label, value, points));
69403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6941c58f1c22SToby Isaac }
6942c58f1c22SToby Isaac 
69434de306b1SToby Isaac /*@C
69449044fa66SMatthew G. Knepley   DMSetStratumIS - Set the points in a label stratum
69454de306b1SToby Isaac 
69464de306b1SToby Isaac   Not Collective
69474de306b1SToby Isaac 
69484de306b1SToby Isaac   Input Parameters:
6949bb7acecfSBarry Smith + dm     - The `DM` object
69504de306b1SToby Isaac . name   - The label name
69514de306b1SToby Isaac . value  - The stratum value
69524de306b1SToby Isaac - points - The stratum points
69534de306b1SToby Isaac 
69544de306b1SToby Isaac   Level: beginner
69554de306b1SToby Isaac 
69561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMClearLabelStratum()`, `DMLabelClearStratum()`, `DMLabelSetStratumIS()`, `DMGetStratumSize()`
69574de306b1SToby Isaac @*/
6958d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetStratumIS(DM dm, const char name[], PetscInt value, IS points)
6959d71ae5a4SJacob Faibussowitsch {
69604de306b1SToby Isaac   DMLabel label;
69614de306b1SToby Isaac 
69624de306b1SToby Isaac   PetscFunctionBegin;
69634de306b1SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
69644f572ea9SToby Isaac   PetscAssertPointer(name, 2);
6965292bffcbSToby Isaac   PetscValidHeaderSpecific(points, IS_CLASSID, 4);
69669566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
69673ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
69689566063dSJacob Faibussowitsch   PetscCall(DMLabelSetStratumIS(label, value, points));
69693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
69704de306b1SToby Isaac }
69714de306b1SToby Isaac 
6972c58f1c22SToby Isaac /*@C
6973bb7acecfSBarry Smith   DMClearLabelStratum - Remove all points from a stratum from a `DMLabel`
6974c58f1c22SToby Isaac 
6975c58f1c22SToby Isaac   Not Collective
6976c58f1c22SToby Isaac 
6977c58f1c22SToby Isaac   Input Parameters:
6978bb7acecfSBarry Smith + dm    - The `DM` object
6979c58f1c22SToby Isaac . name  - The label name
6980c58f1c22SToby Isaac - value - The label value for this point
6981c58f1c22SToby Isaac 
6982c58f1c22SToby Isaac   Output Parameter:
6983c58f1c22SToby Isaac 
6984c58f1c22SToby Isaac   Level: beginner
6985c58f1c22SToby Isaac 
69861cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMLabelClearStratum()`, `DMSetLabelValue()`, `DMGetStratumIS()`, `DMClearLabelValue()`
6987c58f1c22SToby Isaac @*/
6988d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelStratum(DM dm, const char name[], PetscInt value)
6989d71ae5a4SJacob Faibussowitsch {
6990c58f1c22SToby Isaac   DMLabel label;
6991c58f1c22SToby Isaac 
6992c58f1c22SToby Isaac   PetscFunctionBegin;
6993c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
69944f572ea9SToby Isaac   PetscAssertPointer(name, 2);
69959566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
69963ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
69979566063dSJacob Faibussowitsch   PetscCall(DMLabelClearStratum(label, value));
69983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6999c58f1c22SToby Isaac }
7000c58f1c22SToby Isaac 
7001c58f1c22SToby Isaac /*@
7002bb7acecfSBarry Smith   DMGetNumLabels - Return the number of labels defined by on the `DM`
7003c58f1c22SToby Isaac 
7004c58f1c22SToby Isaac   Not Collective
7005c58f1c22SToby Isaac 
7006c58f1c22SToby Isaac   Input Parameter:
7007bb7acecfSBarry Smith . dm - The `DM` object
7008c58f1c22SToby Isaac 
7009c58f1c22SToby Isaac   Output Parameter:
7010c58f1c22SToby Isaac . numLabels - the number of Labels
7011c58f1c22SToby Isaac 
7012c58f1c22SToby Isaac   Level: intermediate
7013c58f1c22SToby Isaac 
70141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabelName()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7015c58f1c22SToby Isaac @*/
7016d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumLabels(DM dm, PetscInt *numLabels)
7017d71ae5a4SJacob Faibussowitsch {
70185d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7019c58f1c22SToby Isaac   PetscInt    n    = 0;
7020c58f1c22SToby Isaac 
7021c58f1c22SToby Isaac   PetscFunctionBegin;
7022c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
70234f572ea9SToby Isaac   PetscAssertPointer(numLabels, 2);
70249371c9d4SSatish Balay   while (next) {
70259371c9d4SSatish Balay     ++n;
70269371c9d4SSatish Balay     next = next->next;
70279371c9d4SSatish Balay   }
7028c58f1c22SToby Isaac   *numLabels = n;
70293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7030c58f1c22SToby Isaac }
7031c58f1c22SToby Isaac 
7032c58f1c22SToby Isaac /*@C
7033c58f1c22SToby Isaac   DMGetLabelName - Return the name of nth label
7034c58f1c22SToby Isaac 
7035c58f1c22SToby Isaac   Not Collective
7036c58f1c22SToby Isaac 
7037c58f1c22SToby Isaac   Input Parameters:
7038bb7acecfSBarry Smith + dm - The `DM` object
7039c58f1c22SToby Isaac - n  - the label number
7040c58f1c22SToby Isaac 
7041c58f1c22SToby Isaac   Output Parameter:
7042c58f1c22SToby Isaac . name - the label name
7043c58f1c22SToby Isaac 
7044c58f1c22SToby Isaac   Level: intermediate
7045c58f1c22SToby Isaac 
704673ff1848SBarry Smith   Developer Note:
7047bb7acecfSBarry Smith   Some of the functions that appropriate on labels using their number have the suffix ByNum, others do not.
7048bb7acecfSBarry Smith 
70491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7050c58f1c22SToby Isaac @*/
7051d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelName(DM dm, PetscInt n, const char **name)
7052d71ae5a4SJacob Faibussowitsch {
70535d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7054c58f1c22SToby Isaac   PetscInt    l    = 0;
7055c58f1c22SToby Isaac 
7056c58f1c22SToby Isaac   PetscFunctionBegin;
7057c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
70584f572ea9SToby Isaac   PetscAssertPointer(name, 3);
7059c58f1c22SToby Isaac   while (next) {
7060c58f1c22SToby Isaac     if (l == n) {
70619566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetName((PetscObject)next->label, name));
70623ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
7063c58f1c22SToby Isaac     }
7064c58f1c22SToby Isaac     ++l;
7065c58f1c22SToby Isaac     next = next->next;
7066c58f1c22SToby Isaac   }
706763a3b9bcSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n);
7068c58f1c22SToby Isaac }
7069c58f1c22SToby Isaac 
7070c58f1c22SToby Isaac /*@C
7071bb7acecfSBarry Smith   DMHasLabel - Determine whether the `DM` has a label of a given name
7072c58f1c22SToby Isaac 
7073c58f1c22SToby Isaac   Not Collective
7074c58f1c22SToby Isaac 
7075c58f1c22SToby Isaac   Input Parameters:
7076bb7acecfSBarry Smith + dm   - The `DM` object
7077c58f1c22SToby Isaac - name - The label name
7078c58f1c22SToby Isaac 
7079c58f1c22SToby Isaac   Output Parameter:
7080bb7acecfSBarry Smith . hasLabel - `PETSC_TRUE` if the label is present
7081c58f1c22SToby Isaac 
7082c58f1c22SToby Isaac   Level: intermediate
7083c58f1c22SToby Isaac 
70841cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabel()`, `DMGetLabelByNum()`, `DMCreateLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7085c58f1c22SToby Isaac @*/
7086d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasLabel(DM dm, const char name[], PetscBool *hasLabel)
7087d71ae5a4SJacob Faibussowitsch {
70885d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7089d67d17b1SMatthew G. Knepley   const char *lname;
7090c58f1c22SToby Isaac 
7091c58f1c22SToby Isaac   PetscFunctionBegin;
7092c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
70934f572ea9SToby Isaac   PetscAssertPointer(name, 2);
70944f572ea9SToby Isaac   PetscAssertPointer(hasLabel, 3);
7095c58f1c22SToby Isaac   *hasLabel = PETSC_FALSE;
7096c58f1c22SToby Isaac   while (next) {
70979566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
70989566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, hasLabel));
7099c58f1c22SToby Isaac     if (*hasLabel) break;
7100c58f1c22SToby Isaac     next = next->next;
7101c58f1c22SToby Isaac   }
71023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7103c58f1c22SToby Isaac }
7104c58f1c22SToby Isaac 
7105a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown
7106c58f1c22SToby Isaac /*@C
710720f4b53cSBarry Smith   DMGetLabel - Return the label of a given name, or `NULL`, from a `DM`
7108c58f1c22SToby Isaac 
7109c58f1c22SToby Isaac   Not Collective
7110c58f1c22SToby Isaac 
7111c58f1c22SToby Isaac   Input Parameters:
7112bb7acecfSBarry Smith + dm   - The `DM` object
7113c58f1c22SToby Isaac - name - The label name
7114c58f1c22SToby Isaac 
7115c58f1c22SToby Isaac   Output Parameter:
711620f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent
7117c58f1c22SToby Isaac 
7118bb7acecfSBarry Smith   Default labels in a `DMPLEX`:
7119bb7acecfSBarry Smith + "depth"       - Holds the depth (co-dimension) of each mesh point
7120bb7acecfSBarry Smith . "celltype"    - Holds the topological type of each cell
7121bb7acecfSBarry Smith . "ghost"       - If the DM is distributed with overlap, this marks the cells and faces in the overlap
7122bb7acecfSBarry Smith . "Cell Sets"   - Mirrors the cell sets defined by GMsh and ExodusII
7123bb7acecfSBarry Smith . "Face Sets"   - Mirrors the face sets defined by GMsh and ExodusII
7124bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh
71256d7c9049SMatthew G. Knepley 
7126c58f1c22SToby Isaac   Level: intermediate
7127c58f1c22SToby Isaac 
712860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMHasLabel()`, `DMGetLabelByNum()`, `DMAddLabel()`, `DMCreateLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()`
7129c58f1c22SToby Isaac @*/
7130d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabel(DM dm, const char name[], DMLabel *label)
7131d71ae5a4SJacob Faibussowitsch {
71325d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7133c58f1c22SToby Isaac   PetscBool   hasLabel;
7134d67d17b1SMatthew G. Knepley   const char *lname;
7135c58f1c22SToby Isaac 
7136c58f1c22SToby Isaac   PetscFunctionBegin;
7137c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
71384f572ea9SToby Isaac   PetscAssertPointer(name, 2);
71394f572ea9SToby Isaac   PetscAssertPointer(label, 3);
7140c58f1c22SToby Isaac   *label = NULL;
7141c58f1c22SToby Isaac   while (next) {
71429566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
71439566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &hasLabel));
7144c58f1c22SToby Isaac     if (hasLabel) {
7145c58f1c22SToby Isaac       *label = next->label;
7146c58f1c22SToby Isaac       break;
7147c58f1c22SToby Isaac     }
7148c58f1c22SToby Isaac     next = next->next;
7149c58f1c22SToby Isaac   }
71503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7151c58f1c22SToby Isaac }
7152c58f1c22SToby Isaac 
7153c58f1c22SToby Isaac /*@C
7154bb7acecfSBarry Smith   DMGetLabelByNum - Return the nth label on a `DM`
7155c58f1c22SToby Isaac 
7156c58f1c22SToby Isaac   Not Collective
7157c58f1c22SToby Isaac 
7158c58f1c22SToby Isaac   Input Parameters:
7159bb7acecfSBarry Smith + dm - The `DM` object
7160c58f1c22SToby Isaac - n  - the label number
7161c58f1c22SToby Isaac 
7162c58f1c22SToby Isaac   Output Parameter:
7163c58f1c22SToby Isaac . label - the label
7164c58f1c22SToby Isaac 
7165c58f1c22SToby Isaac   Level: intermediate
7166c58f1c22SToby Isaac 
71671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7168c58f1c22SToby Isaac @*/
7169d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelByNum(DM dm, PetscInt n, DMLabel *label)
7170d71ae5a4SJacob Faibussowitsch {
71715d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7172c58f1c22SToby Isaac   PetscInt    l    = 0;
7173c58f1c22SToby Isaac 
7174c58f1c22SToby Isaac   PetscFunctionBegin;
7175c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
71764f572ea9SToby Isaac   PetscAssertPointer(label, 3);
7177c58f1c22SToby Isaac   while (next) {
7178c58f1c22SToby Isaac     if (l == n) {
7179c58f1c22SToby Isaac       *label = next->label;
71803ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
7181c58f1c22SToby Isaac     }
7182c58f1c22SToby Isaac     ++l;
7183c58f1c22SToby Isaac     next = next->next;
7184c58f1c22SToby Isaac   }
718563a3b9bcSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n);
7186c58f1c22SToby Isaac }
7187c58f1c22SToby Isaac 
7188c58f1c22SToby Isaac /*@C
7189bb7acecfSBarry Smith   DMAddLabel - Add the label to this `DM`
7190c58f1c22SToby Isaac 
7191c58f1c22SToby Isaac   Not Collective
7192c58f1c22SToby Isaac 
7193c58f1c22SToby Isaac   Input Parameters:
7194bb7acecfSBarry Smith + dm    - The `DM` object
7195bb7acecfSBarry Smith - label - The `DMLabel`
7196c58f1c22SToby Isaac 
7197c58f1c22SToby Isaac   Level: developer
7198c58f1c22SToby Isaac 
719960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7200c58f1c22SToby Isaac @*/
7201d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddLabel(DM dm, DMLabel label)
7202d71ae5a4SJacob Faibussowitsch {
72035d80c0bfSVaclav Hapla   DMLabelLink l, *p, tmpLabel;
7204c58f1c22SToby Isaac   PetscBool   hasLabel;
7205d67d17b1SMatthew G. Knepley   const char *lname;
72065d80c0bfSVaclav Hapla   PetscBool   flg;
7207c58f1c22SToby Isaac 
7208c58f1c22SToby Isaac   PetscFunctionBegin;
7209c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
72109566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetName((PetscObject)label, &lname));
72119566063dSJacob Faibussowitsch   PetscCall(DMHasLabel(dm, lname, &hasLabel));
72127a8be351SBarry Smith   PetscCheck(!hasLabel, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in this DM", lname);
72139566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(1, &tmpLabel));
7214c58f1c22SToby Isaac   tmpLabel->label  = label;
7215c58f1c22SToby Isaac   tmpLabel->output = PETSC_TRUE;
72165d80c0bfSVaclav Hapla   for (p = &dm->labels; (l = *p); p = &l->next) { }
72175d80c0bfSVaclav Hapla   *p = tmpLabel;
72189566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
72199566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(lname, "depth", &flg));
72205d80c0bfSVaclav Hapla   if (flg) dm->depthLabel = label;
72219566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(lname, "celltype", &flg));
7222ba2698f1SMatthew G. Knepley   if (flg) dm->celltypeLabel = label;
72233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7224c58f1c22SToby Isaac }
7225c58f1c22SToby Isaac 
7226a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown
7227c58f1c22SToby Isaac /*@C
72284a7ee7d0SMatthew G. Knepley   DMSetLabel - Replaces the label of a given name, or ignores it if the name is not present
72294a7ee7d0SMatthew G. Knepley 
72304a7ee7d0SMatthew G. Knepley   Not Collective
72314a7ee7d0SMatthew G. Knepley 
72324a7ee7d0SMatthew G. Knepley   Input Parameters:
7233bb7acecfSBarry Smith + dm    - The `DM` object
7234bb7acecfSBarry Smith - label - The `DMLabel`, having the same name, to substitute
72354a7ee7d0SMatthew G. Knepley 
7236bb7acecfSBarry Smith   Default labels in a `DMPLEX`:
7237bb7acecfSBarry Smith + "depth"       - Holds the depth (co-dimension) of each mesh point
7238bb7acecfSBarry Smith . "celltype"    - Holds the topological type of each cell
7239bb7acecfSBarry Smith . "ghost"       - If the DM is distributed with overlap, this marks the cells and faces in the overlap
7240bb7acecfSBarry Smith . "Cell Sets"   - Mirrors the cell sets defined by GMsh and ExodusII
7241bb7acecfSBarry Smith . "Face Sets"   - Mirrors the face sets defined by GMsh and ExodusII
7242bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh
72434a7ee7d0SMatthew G. Knepley 
72444a7ee7d0SMatthew G. Knepley   Level: intermediate
72454a7ee7d0SMatthew G. Knepley 
72461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()`
72474a7ee7d0SMatthew G. Knepley @*/
7248d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabel(DM dm, DMLabel label)
7249d71ae5a4SJacob Faibussowitsch {
72504a7ee7d0SMatthew G. Knepley   DMLabelLink next = dm->labels;
72514a7ee7d0SMatthew G. Knepley   PetscBool   hasLabel, flg;
72524a7ee7d0SMatthew G. Knepley   const char *name, *lname;
72534a7ee7d0SMatthew G. Knepley 
72544a7ee7d0SMatthew G. Knepley   PetscFunctionBegin;
72554a7ee7d0SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
72564a7ee7d0SMatthew G. Knepley   PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
72579566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetName((PetscObject)label, &name));
72584a7ee7d0SMatthew G. Knepley   while (next) {
72599566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
72609566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &hasLabel));
72614a7ee7d0SMatthew G. Knepley     if (hasLabel) {
72629566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)label));
72639566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(lname, "depth", &flg));
72644a7ee7d0SMatthew G. Knepley       if (flg) dm->depthLabel = label;
72659566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(lname, "celltype", &flg));
72664a7ee7d0SMatthew G. Knepley       if (flg) dm->celltypeLabel = label;
72679566063dSJacob Faibussowitsch       PetscCall(DMLabelDestroy(&next->label));
72684a7ee7d0SMatthew G. Knepley       next->label = label;
72694a7ee7d0SMatthew G. Knepley       break;
72704a7ee7d0SMatthew G. Knepley     }
72714a7ee7d0SMatthew G. Knepley     next = next->next;
72724a7ee7d0SMatthew G. Knepley   }
72733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
72744a7ee7d0SMatthew G. Knepley }
72754a7ee7d0SMatthew G. Knepley 
72764a7ee7d0SMatthew G. Knepley /*@C
7277bb7acecfSBarry Smith   DMRemoveLabel - Remove the label given by name from this `DM`
7278c58f1c22SToby Isaac 
7279c58f1c22SToby Isaac   Not Collective
7280c58f1c22SToby Isaac 
7281c58f1c22SToby Isaac   Input Parameters:
7282bb7acecfSBarry Smith + dm   - The `DM` object
7283c58f1c22SToby Isaac - name - The label name
7284c58f1c22SToby Isaac 
7285c58f1c22SToby Isaac   Output Parameter:
728620f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent. Pass in `NULL` to call `DMLabelDestroy()` on the label, otherwise the
7287bb7acecfSBarry Smith           caller is responsible for calling `DMLabelDestroy()`.
7288c58f1c22SToby Isaac 
7289c58f1c22SToby Isaac   Level: developer
7290c58f1c22SToby Isaac 
72911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabelBySelf()`
7292c58f1c22SToby Isaac @*/
7293d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabel(DM dm, const char name[], DMLabel *label)
7294d71ae5a4SJacob Faibussowitsch {
729595d578d6SVaclav Hapla   DMLabelLink link, *pnext;
7296c58f1c22SToby Isaac   PetscBool   hasLabel;
7297d67d17b1SMatthew G. Knepley   const char *lname;
7298c58f1c22SToby Isaac 
7299c58f1c22SToby Isaac   PetscFunctionBegin;
7300c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
73014f572ea9SToby Isaac   PetscAssertPointer(name, 2);
7302e5472504SVaclav Hapla   if (label) {
73034f572ea9SToby Isaac     PetscAssertPointer(label, 3);
7304c58f1c22SToby Isaac     *label = NULL;
7305e5472504SVaclav Hapla   }
73065d80c0bfSVaclav Hapla   for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) {
73079566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)link->label, &lname));
73089566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &hasLabel));
7309c58f1c22SToby Isaac     if (hasLabel) {
731095d578d6SVaclav Hapla       *pnext = link->next; /* Remove from list */
73119566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "depth", &hasLabel));
731295d578d6SVaclav Hapla       if (hasLabel) dm->depthLabel = NULL;
73139566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "celltype", &hasLabel));
7314ba2698f1SMatthew G. Knepley       if (hasLabel) dm->celltypeLabel = NULL;
731595d578d6SVaclav Hapla       if (label) *label = link->label;
73169566063dSJacob Faibussowitsch       else PetscCall(DMLabelDestroy(&link->label));
73179566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
7318c58f1c22SToby Isaac       break;
7319c58f1c22SToby Isaac     }
7320c58f1c22SToby Isaac   }
73213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7322c58f1c22SToby Isaac }
7323c58f1c22SToby Isaac 
7324306894acSVaclav Hapla /*@
7325bb7acecfSBarry Smith   DMRemoveLabelBySelf - Remove the label from this `DM`
7326306894acSVaclav Hapla 
7327306894acSVaclav Hapla   Not Collective
7328306894acSVaclav Hapla 
7329306894acSVaclav Hapla   Input Parameters:
7330bb7acecfSBarry Smith + dm           - The `DM` object
7331bb7acecfSBarry Smith . label        - The `DMLabel` to be removed from the `DM`
733220f4b53cSBarry Smith - failNotFound - Should it fail if the label is not found in the `DM`?
7333306894acSVaclav Hapla 
7334306894acSVaclav Hapla   Level: developer
7335306894acSVaclav Hapla 
7336bb7acecfSBarry Smith   Note:
7337306894acSVaclav Hapla   Only exactly the same instance is removed if found, name match is ignored.
7338bb7acecfSBarry Smith   If the `DM` has an exclusive reference to the label, the label gets destroyed and
7339306894acSVaclav Hapla   *label nullified.
7340306894acSVaclav Hapla 
73411cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()` `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabel()`
7342306894acSVaclav Hapla @*/
7343d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabelBySelf(DM dm, DMLabel *label, PetscBool failNotFound)
7344d71ae5a4SJacob Faibussowitsch {
734543e45a93SVaclav Hapla   DMLabelLink link, *pnext;
7346306894acSVaclav Hapla   PetscBool   hasLabel = PETSC_FALSE;
7347306894acSVaclav Hapla 
7348306894acSVaclav Hapla   PetscFunctionBegin;
7349306894acSVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
73504f572ea9SToby Isaac   PetscAssertPointer(label, 2);
73513ba16761SJacob Faibussowitsch   if (!*label && !failNotFound) PetscFunctionReturn(PETSC_SUCCESS);
7352306894acSVaclav Hapla   PetscValidHeaderSpecific(*label, DMLABEL_CLASSID, 2);
7353306894acSVaclav Hapla   PetscValidLogicalCollectiveBool(dm, failNotFound, 3);
73545d80c0bfSVaclav Hapla   for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) {
735543e45a93SVaclav Hapla     if (*label == link->label) {
7356306894acSVaclav Hapla       hasLabel = PETSC_TRUE;
735743e45a93SVaclav Hapla       *pnext   = link->next; /* Remove from list */
7358306894acSVaclav Hapla       if (*label == dm->depthLabel) dm->depthLabel = NULL;
7359ba2698f1SMatthew G. Knepley       if (*label == dm->celltypeLabel) dm->celltypeLabel = NULL;
736043e45a93SVaclav Hapla       if (((PetscObject)link->label)->refct < 2) *label = NULL; /* nullify if exclusive reference */
73619566063dSJacob Faibussowitsch       PetscCall(DMLabelDestroy(&link->label));
73629566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
7363306894acSVaclav Hapla       break;
7364306894acSVaclav Hapla     }
7365306894acSVaclav Hapla   }
73667a8be351SBarry Smith   PetscCheck(hasLabel || !failNotFound, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Given label not found in DM");
73673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7368306894acSVaclav Hapla }
7369306894acSVaclav Hapla 
7370c58f1c22SToby Isaac /*@C
7371c58f1c22SToby Isaac   DMGetLabelOutput - Get the output flag for a given label
7372c58f1c22SToby Isaac 
7373c58f1c22SToby Isaac   Not Collective
7374c58f1c22SToby Isaac 
7375c58f1c22SToby Isaac   Input Parameters:
7376bb7acecfSBarry Smith + dm   - The `DM` object
7377c58f1c22SToby Isaac - name - The label name
7378c58f1c22SToby Isaac 
7379c58f1c22SToby Isaac   Output Parameter:
7380c58f1c22SToby Isaac . output - The flag for output
7381c58f1c22SToby Isaac 
7382c58f1c22SToby Isaac   Level: developer
7383c58f1c22SToby Isaac 
73841cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMSetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7385c58f1c22SToby Isaac @*/
7386d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelOutput(DM dm, const char name[], PetscBool *output)
7387d71ae5a4SJacob Faibussowitsch {
73885d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7389d67d17b1SMatthew G. Knepley   const char *lname;
7390c58f1c22SToby Isaac 
7391c58f1c22SToby Isaac   PetscFunctionBegin;
7392c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
73934f572ea9SToby Isaac   PetscAssertPointer(name, 2);
73944f572ea9SToby Isaac   PetscAssertPointer(output, 3);
7395c58f1c22SToby Isaac   while (next) {
7396c58f1c22SToby Isaac     PetscBool flg;
7397c58f1c22SToby Isaac 
73989566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
73999566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &flg));
74009371c9d4SSatish Balay     if (flg) {
74019371c9d4SSatish Balay       *output = next->output;
74023ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
74039371c9d4SSatish Balay     }
7404c58f1c22SToby Isaac     next = next->next;
7405c58f1c22SToby Isaac   }
740698921bdaSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name);
7407c58f1c22SToby Isaac }
7408c58f1c22SToby Isaac 
7409c58f1c22SToby Isaac /*@C
7410bb7acecfSBarry Smith   DMSetLabelOutput - Set if a given label should be saved to a `PetscViewer` in calls to `DMView()`
7411c58f1c22SToby Isaac 
7412c58f1c22SToby Isaac   Not Collective
7413c58f1c22SToby Isaac 
7414c58f1c22SToby Isaac   Input Parameters:
7415bb7acecfSBarry Smith + dm     - The `DM` object
7416c58f1c22SToby Isaac . name   - The label name
7417bb7acecfSBarry Smith - output - `PETSC_TRUE` to save the label to the viewer
7418c58f1c22SToby Isaac 
7419c58f1c22SToby Isaac   Level: developer
7420c58f1c22SToby Isaac 
74211cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetOutputFlag()`, `DMGetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7422c58f1c22SToby Isaac @*/
7423d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelOutput(DM dm, const char name[], PetscBool output)
7424d71ae5a4SJacob Faibussowitsch {
74255d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7426d67d17b1SMatthew G. Knepley   const char *lname;
7427c58f1c22SToby Isaac 
7428c58f1c22SToby Isaac   PetscFunctionBegin;
7429c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
74304f572ea9SToby Isaac   PetscAssertPointer(name, 2);
7431c58f1c22SToby Isaac   while (next) {
7432c58f1c22SToby Isaac     PetscBool flg;
7433c58f1c22SToby Isaac 
74349566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
74359566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &flg));
74369371c9d4SSatish Balay     if (flg) {
74379371c9d4SSatish Balay       next->output = output;
74383ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
74399371c9d4SSatish Balay     }
7440c58f1c22SToby Isaac     next = next->next;
7441c58f1c22SToby Isaac   }
744298921bdaSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name);
7443c58f1c22SToby Isaac }
7444c58f1c22SToby Isaac 
7445c58f1c22SToby Isaac /*@
7446bb7acecfSBarry Smith   DMCopyLabels - Copy labels from one `DM` mesh to another `DM` with a superset of the points
7447c58f1c22SToby Isaac 
744820f4b53cSBarry Smith   Collective
7449c58f1c22SToby Isaac 
7450d8d19677SJose E. Roman   Input Parameters:
7451bb7acecfSBarry Smith + dmA   - The `DM` object with initial labels
7452bb7acecfSBarry Smith . dmB   - The `DM` object to which labels are copied
7453bb7acecfSBarry Smith . mode  - Copy labels by pointers (`PETSC_OWN_POINTER`) or duplicate them (`PETSC_COPY_VALUES`)
7454bb7acecfSBarry Smith . all   - Copy all labels including "depth", "dim", and "celltype" (`PETSC_TRUE`) which are otherwise ignored (`PETSC_FALSE`)
7455bb7acecfSBarry Smith - emode - How to behave when a `DMLabel` in the source and destination `DM`s with the same name is encountered (see `DMCopyLabelsMode`)
7456c58f1c22SToby Isaac 
7457c58f1c22SToby Isaac   Level: intermediate
7458c58f1c22SToby Isaac 
7459bb7acecfSBarry Smith   Note:
74602cbb9b06SVaclav Hapla   This is typically used when interpolating or otherwise adding to a mesh, or testing.
7461c58f1c22SToby Isaac 
74621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`
7463c58f1c22SToby Isaac @*/
7464d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyLabels(DM dmA, DM dmB, PetscCopyMode mode, PetscBool all, DMCopyLabelsMode emode)
7465d71ae5a4SJacob Faibussowitsch {
74662cbb9b06SVaclav Hapla   DMLabel     label, labelNew, labelOld;
7467c58f1c22SToby Isaac   const char *name;
7468c58f1c22SToby Isaac   PetscBool   flg;
74695d80c0bfSVaclav Hapla   DMLabelLink link;
7470c58f1c22SToby Isaac 
74715d80c0bfSVaclav Hapla   PetscFunctionBegin;
74725d80c0bfSVaclav Hapla   PetscValidHeaderSpecific(dmA, DM_CLASSID, 1);
74735d80c0bfSVaclav Hapla   PetscValidHeaderSpecific(dmB, DM_CLASSID, 2);
74745d80c0bfSVaclav Hapla   PetscValidLogicalCollectiveEnum(dmA, mode, 3);
74755d80c0bfSVaclav Hapla   PetscValidLogicalCollectiveBool(dmA, all, 4);
74767a8be351SBarry Smith   PetscCheck(mode != PETSC_USE_POINTER, PetscObjectComm((PetscObject)dmA), PETSC_ERR_SUP, "PETSC_USE_POINTER not supported for objects");
74773ba16761SJacob Faibussowitsch   if (dmA == dmB) PetscFunctionReturn(PETSC_SUCCESS);
74785d80c0bfSVaclav Hapla   for (link = dmA->labels; link; link = link->next) {
74795d80c0bfSVaclav Hapla     label = link->label;
74809566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)label, &name));
74815d80c0bfSVaclav Hapla     if (!all) {
74829566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "depth", &flg));
7483c58f1c22SToby Isaac       if (flg) continue;
74849566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "dim", &flg));
74857d5acc75SStefano Zampini       if (flg) continue;
74869566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "celltype", &flg));
7487ba2698f1SMatthew G. Knepley       if (flg) continue;
74885d80c0bfSVaclav Hapla     }
74899566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dmB, name, &labelOld));
74902cbb9b06SVaclav Hapla     if (labelOld) {
74912cbb9b06SVaclav Hapla       switch (emode) {
7492d71ae5a4SJacob Faibussowitsch       case DM_COPY_LABELS_KEEP:
7493d71ae5a4SJacob Faibussowitsch         continue;
7494d71ae5a4SJacob Faibussowitsch       case DM_COPY_LABELS_REPLACE:
7495d71ae5a4SJacob Faibussowitsch         PetscCall(DMRemoveLabelBySelf(dmB, &labelOld, PETSC_TRUE));
7496d71ae5a4SJacob Faibussowitsch         break;
7497d71ae5a4SJacob Faibussowitsch       case DM_COPY_LABELS_FAIL:
7498d71ae5a4SJacob Faibussowitsch         SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in destination DM", name);
7499d71ae5a4SJacob Faibussowitsch       default:
7500d71ae5a4SJacob Faibussowitsch         SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Unhandled DMCopyLabelsMode %d", (int)emode);
75012cbb9b06SVaclav Hapla       }
75022cbb9b06SVaclav Hapla     }
75035d80c0bfSVaclav Hapla     if (mode == PETSC_COPY_VALUES) {
75049566063dSJacob Faibussowitsch       PetscCall(DMLabelDuplicate(label, &labelNew));
75055d80c0bfSVaclav Hapla     } else {
75065d80c0bfSVaclav Hapla       labelNew = label;
75075d80c0bfSVaclav Hapla     }
75089566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dmB, labelNew));
75099566063dSJacob Faibussowitsch     if (mode == PETSC_COPY_VALUES) PetscCall(DMLabelDestroy(&labelNew));
7510c58f1c22SToby Isaac   }
75113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7512c58f1c22SToby Isaac }
7513461a15a0SLisandro Dalcin 
7514609dae6eSVaclav Hapla /*@C
7515b4028c23SStefano Zampini   DMCompareLabels - Compare labels between two `DM` objects
7516609dae6eSVaclav Hapla 
751720f4b53cSBarry Smith   Collective; No Fortran Support
7518609dae6eSVaclav Hapla 
7519609dae6eSVaclav Hapla   Input Parameters:
7520bb7acecfSBarry Smith + dm0 - First `DM` object
7521bb7acecfSBarry Smith - dm1 - Second `DM` object
7522609dae6eSVaclav Hapla 
7523a4e35b19SJacob Faibussowitsch   Output Parameters:
75245efe38ccSVaclav Hapla + equal   - (Optional) Flag whether labels of dm0 and dm1 are the same
752520f4b53cSBarry Smith - message - (Optional) Message describing the difference, or `NULL` if there is no difference
7526609dae6eSVaclav Hapla 
7527609dae6eSVaclav Hapla   Level: intermediate
7528609dae6eSVaclav Hapla 
7529609dae6eSVaclav Hapla   Notes:
7530bb7acecfSBarry Smith   The output flag equal will be the same on all processes.
7531bb7acecfSBarry Smith 
753220f4b53cSBarry Smith   If equal is passed as `NULL` and difference is found, an error is thrown on all processes.
7533bb7acecfSBarry Smith 
753420f4b53cSBarry Smith   Make sure to pass equal is `NULL` on all processes or none of them.
7535609dae6eSVaclav Hapla 
75365efe38ccSVaclav Hapla   The output message is set independently on each rank.
7537bb7acecfSBarry Smith 
7538bb7acecfSBarry Smith   message must be freed with `PetscFree()`
7539bb7acecfSBarry Smith 
754020f4b53cSBarry Smith   If message is passed as `NULL` and a difference is found, the difference description is printed to stderr in synchronized manner.
7541bb7acecfSBarry Smith 
754220f4b53cSBarry Smith   Make sure to pass message as `NULL` on all processes or no processes.
7543609dae6eSVaclav Hapla 
7544609dae6eSVaclav Hapla   Labels are matched by name. If the number of labels and their names are equal,
7545bb7acecfSBarry Smith   `DMLabelCompare()` is used to compare each pair of labels with the same name.
7546609dae6eSVaclav Hapla 
75471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`, `DMLabelCompare()`
7548609dae6eSVaclav Hapla @*/
7549d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompareLabels(DM dm0, DM dm1, PetscBool *equal, char **message)
7550d71ae5a4SJacob Faibussowitsch {
75515efe38ccSVaclav Hapla   PetscInt    n, i;
7552609dae6eSVaclav Hapla   char        msg[PETSC_MAX_PATH_LEN] = "";
75535efe38ccSVaclav Hapla   PetscBool   eq;
7554609dae6eSVaclav Hapla   MPI_Comm    comm;
75555efe38ccSVaclav Hapla   PetscMPIInt rank;
7556609dae6eSVaclav Hapla 
7557609dae6eSVaclav Hapla   PetscFunctionBegin;
7558609dae6eSVaclav Hapla   PetscValidHeaderSpecific(dm0, DM_CLASSID, 1);
7559609dae6eSVaclav Hapla   PetscValidHeaderSpecific(dm1, DM_CLASSID, 2);
7560609dae6eSVaclav Hapla   PetscCheckSameComm(dm0, 1, dm1, 2);
75614f572ea9SToby Isaac   if (equal) PetscAssertPointer(equal, 3);
75624f572ea9SToby Isaac   if (message) PetscAssertPointer(message, 4);
75639566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm0, &comm));
75649566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
75655efe38ccSVaclav Hapla   {
75665efe38ccSVaclav Hapla     PetscInt n1;
75675efe38ccSVaclav Hapla 
75689566063dSJacob Faibussowitsch     PetscCall(DMGetNumLabels(dm0, &n));
75699566063dSJacob Faibussowitsch     PetscCall(DMGetNumLabels(dm1, &n1));
75705efe38ccSVaclav Hapla     eq = (PetscBool)(n == n1);
757148a46eb9SPierre Jolivet     if (!eq) PetscCall(PetscSNPrintf(msg, sizeof(msg), "Number of labels in dm0 = %" PetscInt_FMT " != %" PetscInt_FMT " = Number of labels in dm1", n, n1));
7572712fec58SPierre Jolivet     PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm));
75735efe38ccSVaclav Hapla     if (!eq) goto finish;
75745efe38ccSVaclav Hapla   }
75755efe38ccSVaclav Hapla   for (i = 0; i < n; i++) {
7576609dae6eSVaclav Hapla     DMLabel     l0, l1;
7577609dae6eSVaclav Hapla     const char *name;
7578609dae6eSVaclav Hapla     char       *msgInner;
7579609dae6eSVaclav Hapla 
7580609dae6eSVaclav Hapla     /* Ignore label order */
75819566063dSJacob Faibussowitsch     PetscCall(DMGetLabelByNum(dm0, i, &l0));
75829566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)l0, &name));
75839566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm1, name, &l1));
7584609dae6eSVaclav Hapla     if (!l1) {
758563a3b9bcSJacob Faibussowitsch       PetscCall(PetscSNPrintf(msg, sizeof(msg), "Label \"%s\" (#%" PetscInt_FMT " in dm0) not found in dm1", name, i));
75865efe38ccSVaclav Hapla       eq = PETSC_FALSE;
75875efe38ccSVaclav Hapla       break;
7588609dae6eSVaclav Hapla     }
75899566063dSJacob Faibussowitsch     PetscCall(DMLabelCompare(comm, l0, l1, &eq, &msgInner));
75909566063dSJacob Faibussowitsch     PetscCall(PetscStrncpy(msg, msgInner, sizeof(msg)));
75919566063dSJacob Faibussowitsch     PetscCall(PetscFree(msgInner));
75925efe38ccSVaclav Hapla     if (!eq) break;
7593609dae6eSVaclav Hapla   }
7594712fec58SPierre Jolivet   PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm));
7595609dae6eSVaclav Hapla finish:
75965efe38ccSVaclav Hapla   /* If message output arg not set, print to stderr */
7597609dae6eSVaclav Hapla   if (message) {
7598609dae6eSVaclav Hapla     *message = NULL;
759948a46eb9SPierre Jolivet     if (msg[0]) PetscCall(PetscStrallocpy(msg, message));
76005efe38ccSVaclav Hapla   } else {
760148a46eb9SPierre Jolivet     if (msg[0]) PetscCall(PetscSynchronizedFPrintf(comm, PETSC_STDERR, "[%d] %s\n", rank, msg));
76029566063dSJacob Faibussowitsch     PetscCall(PetscSynchronizedFlush(comm, PETSC_STDERR));
76035efe38ccSVaclav Hapla   }
76045efe38ccSVaclav Hapla   /* If same output arg not ser and labels are not equal, throw error */
76055efe38ccSVaclav Hapla   if (equal) *equal = eq;
76067a8be351SBarry Smith   else PetscCheck(eq, comm, PETSC_ERR_ARG_INCOMP, "DMLabels are not the same in dm0 and dm1");
76073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7608609dae6eSVaclav Hapla }
7609609dae6eSVaclav Hapla 
7610d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue_Fast(DM dm, DMLabel *label, const char name[], PetscInt point, PetscInt value)
7611d71ae5a4SJacob Faibussowitsch {
7612461a15a0SLisandro Dalcin   PetscFunctionBegin;
76134f572ea9SToby Isaac   PetscAssertPointer(label, 2);
7614461a15a0SLisandro Dalcin   if (!*label) {
76159566063dSJacob Faibussowitsch     PetscCall(DMCreateLabel(dm, name));
76169566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, name, label));
7617461a15a0SLisandro Dalcin   }
76189566063dSJacob Faibussowitsch   PetscCall(DMLabelSetValue(*label, point, value));
76193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7620461a15a0SLisandro Dalcin }
7621461a15a0SLisandro Dalcin 
76220fdc7489SMatthew Knepley /*
76230fdc7489SMatthew Knepley   Many mesh programs, such as Triangle and TetGen, allow only a single label for each mesh point. Therefore, we would
76240fdc7489SMatthew Knepley   like to encode all label IDs using a single, universal label. We can do this by assigning an integer to every
76250fdc7489SMatthew Knepley   (label, id) pair in the DM.
76260fdc7489SMatthew Knepley 
76270fdc7489SMatthew Knepley   However, a mesh point can have multiple labels, so we must separate all these values. We will assign a bit range to
76280fdc7489SMatthew Knepley   each label.
76290fdc7489SMatthew Knepley */
7630d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreate(DM dm, DMUniversalLabel *universal)
7631d71ae5a4SJacob Faibussowitsch {
76320fdc7489SMatthew Knepley   DMUniversalLabel ul;
76330fdc7489SMatthew Knepley   PetscBool       *active;
76340fdc7489SMatthew Knepley   PetscInt         pStart, pEnd, p, Nl, l, m;
76350fdc7489SMatthew Knepley 
76360fdc7489SMatthew Knepley   PetscFunctionBegin;
76379566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(1, &ul));
76389566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "universal", &ul->label));
76399566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(dm, &Nl));
76409566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Nl, &active));
76410fdc7489SMatthew Knepley   ul->Nl = 0;
76420fdc7489SMatthew Knepley   for (l = 0; l < Nl; ++l) {
76430fdc7489SMatthew Knepley     PetscBool   isdepth, iscelltype;
76440fdc7489SMatthew Knepley     const char *name;
76450fdc7489SMatthew Knepley 
76469566063dSJacob Faibussowitsch     PetscCall(DMGetLabelName(dm, l, &name));
76479566063dSJacob Faibussowitsch     PetscCall(PetscStrncmp(name, "depth", 6, &isdepth));
76489566063dSJacob Faibussowitsch     PetscCall(PetscStrncmp(name, "celltype", 9, &iscelltype));
76490fdc7489SMatthew Knepley     active[l] = !(isdepth || iscelltype) ? PETSC_TRUE : PETSC_FALSE;
76500fdc7489SMatthew Knepley     if (active[l]) ++ul->Nl;
76510fdc7489SMatthew Knepley   }
76529566063dSJacob Faibussowitsch   PetscCall(PetscCalloc5(ul->Nl, &ul->names, ul->Nl, &ul->indices, ul->Nl + 1, &ul->offsets, ul->Nl + 1, &ul->bits, ul->Nl, &ul->masks));
76530fdc7489SMatthew Knepley   ul->Nv = 0;
76540fdc7489SMatthew Knepley   for (l = 0, m = 0; l < Nl; ++l) {
76550fdc7489SMatthew Knepley     DMLabel     label;
76560fdc7489SMatthew Knepley     PetscInt    nv;
76570fdc7489SMatthew Knepley     const char *name;
76580fdc7489SMatthew Knepley 
76590fdc7489SMatthew Knepley     if (!active[l]) continue;
76609566063dSJacob Faibussowitsch     PetscCall(DMGetLabelName(dm, l, &name));
76619566063dSJacob Faibussowitsch     PetscCall(DMGetLabelByNum(dm, l, &label));
76629566063dSJacob Faibussowitsch     PetscCall(DMLabelGetNumValues(label, &nv));
76639566063dSJacob Faibussowitsch     PetscCall(PetscStrallocpy(name, &ul->names[m]));
76640fdc7489SMatthew Knepley     ul->indices[m] = l;
76650fdc7489SMatthew Knepley     ul->Nv += nv;
76660fdc7489SMatthew Knepley     ul->offsets[m + 1] = nv;
76670fdc7489SMatthew Knepley     ul->bits[m + 1]    = PetscCeilReal(PetscLog2Real(nv + 1));
76680fdc7489SMatthew Knepley     ++m;
76690fdc7489SMatthew Knepley   }
76700fdc7489SMatthew Knepley   for (l = 1; l <= ul->Nl; ++l) {
76710fdc7489SMatthew Knepley     ul->offsets[l] = ul->offsets[l - 1] + ul->offsets[l];
76720fdc7489SMatthew Knepley     ul->bits[l]    = ul->bits[l - 1] + ul->bits[l];
76730fdc7489SMatthew Knepley   }
76740fdc7489SMatthew Knepley   for (l = 0; l < ul->Nl; ++l) {
76750fdc7489SMatthew Knepley     PetscInt b;
76760fdc7489SMatthew Knepley 
76770fdc7489SMatthew Knepley     ul->masks[l] = 0;
76780fdc7489SMatthew Knepley     for (b = ul->bits[l]; b < ul->bits[l + 1]; ++b) ul->masks[l] |= 1 << b;
76790fdc7489SMatthew Knepley   }
76809566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ul->Nv, &ul->values));
76810fdc7489SMatthew Knepley   for (l = 0, m = 0; l < Nl; ++l) {
76820fdc7489SMatthew Knepley     DMLabel         label;
76830fdc7489SMatthew Knepley     IS              valueIS;
76840fdc7489SMatthew Knepley     const PetscInt *varr;
76850fdc7489SMatthew Knepley     PetscInt        nv, v;
76860fdc7489SMatthew Knepley 
76870fdc7489SMatthew Knepley     if (!active[l]) continue;
76889566063dSJacob Faibussowitsch     PetscCall(DMGetLabelByNum(dm, l, &label));
76899566063dSJacob Faibussowitsch     PetscCall(DMLabelGetNumValues(label, &nv));
76909566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValueIS(label, &valueIS));
76919566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(valueIS, &varr));
7692ad540459SPierre Jolivet     for (v = 0; v < nv; ++v) ul->values[ul->offsets[m] + v] = varr[v];
76939566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(valueIS, &varr));
76949566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&valueIS));
76959566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(nv, &ul->values[ul->offsets[m]]));
76960fdc7489SMatthew Knepley     ++m;
76970fdc7489SMatthew Knepley   }
76989566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
76990fdc7489SMatthew Knepley   for (p = pStart; p < pEnd; ++p) {
77000fdc7489SMatthew Knepley     PetscInt  uval   = 0;
77010fdc7489SMatthew Knepley     PetscBool marked = PETSC_FALSE;
77020fdc7489SMatthew Knepley 
77030fdc7489SMatthew Knepley     for (l = 0, m = 0; l < Nl; ++l) {
77040fdc7489SMatthew Knepley       DMLabel  label;
77050649b39aSStefano Zampini       PetscInt val, defval, loc, nv;
77060fdc7489SMatthew Knepley 
77070fdc7489SMatthew Knepley       if (!active[l]) continue;
77089566063dSJacob Faibussowitsch       PetscCall(DMGetLabelByNum(dm, l, &label));
77099566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(label, p, &val));
77109566063dSJacob Faibussowitsch       PetscCall(DMLabelGetDefaultValue(label, &defval));
77119371c9d4SSatish Balay       if (val == defval) {
77129371c9d4SSatish Balay         ++m;
77139371c9d4SSatish Balay         continue;
77149371c9d4SSatish Balay       }
77150649b39aSStefano Zampini       nv     = ul->offsets[m + 1] - ul->offsets[m];
77160fdc7489SMatthew Knepley       marked = PETSC_TRUE;
77179566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(val, nv, &ul->values[ul->offsets[m]], &loc));
771863a3b9bcSJacob Faibussowitsch       PetscCheck(loc >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Label value %" PetscInt_FMT " not found in compression array", val);
77190fdc7489SMatthew Knepley       uval += (loc + 1) << ul->bits[m];
77200fdc7489SMatthew Knepley       ++m;
77210fdc7489SMatthew Knepley     }
77229566063dSJacob Faibussowitsch     if (marked) PetscCall(DMLabelSetValue(ul->label, p, uval));
77230fdc7489SMatthew Knepley   }
77249566063dSJacob Faibussowitsch   PetscCall(PetscFree(active));
77250fdc7489SMatthew Knepley   *universal = ul;
77263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
77270fdc7489SMatthew Knepley }
77280fdc7489SMatthew Knepley 
7729d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelDestroy(DMUniversalLabel *universal)
7730d71ae5a4SJacob Faibussowitsch {
77310fdc7489SMatthew Knepley   PetscInt l;
77320fdc7489SMatthew Knepley 
77330fdc7489SMatthew Knepley   PetscFunctionBegin;
77349566063dSJacob Faibussowitsch   for (l = 0; l < (*universal)->Nl; ++l) PetscCall(PetscFree((*universal)->names[l]));
77359566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&(*universal)->label));
77369566063dSJacob Faibussowitsch   PetscCall(PetscFree5((*universal)->names, (*universal)->indices, (*universal)->offsets, (*universal)->bits, (*universal)->masks));
77379566063dSJacob Faibussowitsch   PetscCall(PetscFree((*universal)->values));
77389566063dSJacob Faibussowitsch   PetscCall(PetscFree(*universal));
77390fdc7489SMatthew Knepley   *universal = NULL;
77403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
77410fdc7489SMatthew Knepley }
77420fdc7489SMatthew Knepley 
7743d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelGetLabel(DMUniversalLabel ul, DMLabel *ulabel)
7744d71ae5a4SJacob Faibussowitsch {
77450fdc7489SMatthew Knepley   PetscFunctionBegin;
77464f572ea9SToby Isaac   PetscAssertPointer(ulabel, 2);
77470fdc7489SMatthew Knepley   *ulabel = ul->label;
77483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
77490fdc7489SMatthew Knepley }
77500fdc7489SMatthew Knepley 
7751d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreateLabels(DMUniversalLabel ul, PetscBool preserveOrder, DM dm)
7752d71ae5a4SJacob Faibussowitsch {
77530fdc7489SMatthew Knepley   PetscInt Nl = ul->Nl, l;
77540fdc7489SMatthew Knepley 
77550fdc7489SMatthew Knepley   PetscFunctionBegin;
7756064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(dm, DM_CLASSID, 3);
77570fdc7489SMatthew Knepley   for (l = 0; l < Nl; ++l) {
77589566063dSJacob Faibussowitsch     if (preserveOrder) PetscCall(DMCreateLabelAtIndex(dm, ul->indices[l], ul->names[l]));
77599566063dSJacob Faibussowitsch     else PetscCall(DMCreateLabel(dm, ul->names[l]));
77600fdc7489SMatthew Knepley   }
77610fdc7489SMatthew Knepley   if (preserveOrder) {
77620fdc7489SMatthew Knepley     for (l = 0; l < ul->Nl; ++l) {
77630fdc7489SMatthew Knepley       const char *name;
77640fdc7489SMatthew Knepley       PetscBool   match;
77650fdc7489SMatthew Knepley 
77669566063dSJacob Faibussowitsch       PetscCall(DMGetLabelName(dm, ul->indices[l], &name));
77679566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, ul->names[l], &match));
776863a3b9bcSJacob Faibussowitsch       PetscCheck(match, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Label %" PetscInt_FMT " name %s does not match new name %s", l, name, ul->names[l]);
77690fdc7489SMatthew Knepley     }
77700fdc7489SMatthew Knepley   }
77713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
77720fdc7489SMatthew Knepley }
77730fdc7489SMatthew Knepley 
7774d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelSetLabelValue(DMUniversalLabel ul, DM dm, PetscBool useIndex, PetscInt p, PetscInt value)
7775d71ae5a4SJacob Faibussowitsch {
77760fdc7489SMatthew Knepley   PetscInt l;
77770fdc7489SMatthew Knepley 
77780fdc7489SMatthew Knepley   PetscFunctionBegin;
77790fdc7489SMatthew Knepley   for (l = 0; l < ul->Nl; ++l) {
77800fdc7489SMatthew Knepley     DMLabel  label;
77810fdc7489SMatthew Knepley     PetscInt lval = (value & ul->masks[l]) >> ul->bits[l];
77820fdc7489SMatthew Knepley 
77830fdc7489SMatthew Knepley     if (lval) {
77849566063dSJacob Faibussowitsch       if (useIndex) PetscCall(DMGetLabelByNum(dm, ul->indices[l], &label));
77859566063dSJacob Faibussowitsch       else PetscCall(DMGetLabel(dm, ul->names[l], &label));
77869566063dSJacob Faibussowitsch       PetscCall(DMLabelSetValue(label, p, ul->values[ul->offsets[l] + lval - 1]));
77870fdc7489SMatthew Knepley     }
77880fdc7489SMatthew Knepley   }
77893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
77900fdc7489SMatthew Knepley }
7791a8fb8f29SToby Isaac 
7792a8fb8f29SToby Isaac /*@
7793bb7acecfSBarry Smith   DMGetCoarseDM - Get the coarse `DM`from which this `DM` was obtained by refinement
7794bb7acecfSBarry Smith 
779520f4b53cSBarry Smith   Not Collective
7796a8fb8f29SToby Isaac 
7797a8fb8f29SToby Isaac   Input Parameter:
7798bb7acecfSBarry Smith . dm - The `DM` object
7799a8fb8f29SToby Isaac 
7800a8fb8f29SToby Isaac   Output Parameter:
7801bb7acecfSBarry Smith . cdm - The coarse `DM`
7802a8fb8f29SToby Isaac 
7803a8fb8f29SToby Isaac   Level: intermediate
7804a8fb8f29SToby Isaac 
78051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetCoarseDM()`, `DMCoarsen()`
7806a8fb8f29SToby Isaac @*/
7807d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarseDM(DM dm, DM *cdm)
7808d71ae5a4SJacob Faibussowitsch {
7809a8fb8f29SToby Isaac   PetscFunctionBegin;
7810a8fb8f29SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
78114f572ea9SToby Isaac   PetscAssertPointer(cdm, 2);
7812a8fb8f29SToby Isaac   *cdm = dm->coarseMesh;
78133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7814a8fb8f29SToby Isaac }
7815a8fb8f29SToby Isaac 
7816a8fb8f29SToby Isaac /*@
7817bb7acecfSBarry Smith   DMSetCoarseDM - Set the coarse `DM` from which this `DM` was obtained by refinement
7818a8fb8f29SToby Isaac 
7819a8fb8f29SToby Isaac   Input Parameters:
7820bb7acecfSBarry Smith + dm  - The `DM` object
7821bb7acecfSBarry Smith - cdm - The coarse `DM`
7822a8fb8f29SToby Isaac 
7823a8fb8f29SToby Isaac   Level: intermediate
7824a8fb8f29SToby Isaac 
7825bb7acecfSBarry Smith   Note:
7826bb7acecfSBarry Smith   Normally this is set automatically by `DMRefine()`
7827bb7acecfSBarry Smith 
78281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCoarseDM()`, `DMCoarsen()`, `DMSetRefine()`, `DMSetFineDM()`
7829a8fb8f29SToby Isaac @*/
7830d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarseDM(DM dm, DM cdm)
7831d71ae5a4SJacob Faibussowitsch {
7832a8fb8f29SToby Isaac   PetscFunctionBegin;
7833a8fb8f29SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7834a8fb8f29SToby Isaac   if (cdm) PetscValidHeaderSpecific(cdm, DM_CLASSID, 2);
783589d734beSBarry Smith   if (dm == cdm) cdm = NULL;
78369566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)cdm));
78379566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dm->coarseMesh));
7838a8fb8f29SToby Isaac   dm->coarseMesh = cdm;
78393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7840a8fb8f29SToby Isaac }
7841a8fb8f29SToby Isaac 
784288bdff64SToby Isaac /*@
7843bb7acecfSBarry Smith   DMGetFineDM - Get the fine mesh from which this `DM` was obtained by coarsening
784488bdff64SToby Isaac 
784588bdff64SToby Isaac   Input Parameter:
7846bb7acecfSBarry Smith . dm - The `DM` object
784788bdff64SToby Isaac 
784888bdff64SToby Isaac   Output Parameter:
7849bb7acecfSBarry Smith . fdm - The fine `DM`
785088bdff64SToby Isaac 
785188bdff64SToby Isaac   Level: intermediate
785288bdff64SToby Isaac 
78531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetFineDM()`, `DMCoarsen()`, `DMRefine()`
785488bdff64SToby Isaac @*/
7855d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFineDM(DM dm, DM *fdm)
7856d71ae5a4SJacob Faibussowitsch {
785788bdff64SToby Isaac   PetscFunctionBegin;
785888bdff64SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
78594f572ea9SToby Isaac   PetscAssertPointer(fdm, 2);
786088bdff64SToby Isaac   *fdm = dm->fineMesh;
78613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
786288bdff64SToby Isaac }
786388bdff64SToby Isaac 
786488bdff64SToby Isaac /*@
7865bb7acecfSBarry Smith   DMSetFineDM - Set the fine mesh from which this was obtained by coarsening
786688bdff64SToby Isaac 
786788bdff64SToby Isaac   Input Parameters:
7868bb7acecfSBarry Smith + dm  - The `DM` object
7869bb7acecfSBarry Smith - fdm - The fine `DM`
787088bdff64SToby Isaac 
7871bb7acecfSBarry Smith   Level: developer
787288bdff64SToby Isaac 
7873bb7acecfSBarry Smith   Note:
7874bb7acecfSBarry Smith   Normally this is set automatically by `DMCoarsen()`
7875bb7acecfSBarry Smith 
78761cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFineDM()`, `DMCoarsen()`, `DMRefine()`
787788bdff64SToby Isaac @*/
7878d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFineDM(DM dm, DM fdm)
7879d71ae5a4SJacob Faibussowitsch {
788088bdff64SToby Isaac   PetscFunctionBegin;
788188bdff64SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
788288bdff64SToby Isaac   if (fdm) PetscValidHeaderSpecific(fdm, DM_CLASSID, 2);
788389d734beSBarry Smith   if (dm == fdm) fdm = NULL;
78849566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)fdm));
78859566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dm->fineMesh));
788688bdff64SToby Isaac   dm->fineMesh = fdm;
78873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
788888bdff64SToby Isaac }
788988bdff64SToby Isaac 
7890a6ba4734SToby Isaac /*@C
7891bb7acecfSBarry Smith   DMAddBoundary - Add a boundary condition to a model represented by a `DM`
7892a6ba4734SToby Isaac 
789320f4b53cSBarry Smith   Collective
7894783e2ec8SMatthew G. Knepley 
7895a6ba4734SToby Isaac   Input Parameters:
7896bb7acecfSBarry Smith + dm       - The `DM`, with a `PetscDS` that matches the problem being constrained
7897bb7acecfSBarry Smith . type     - The type of condition, e.g. `DM_BC_ESSENTIAL_ANALYTIC`, `DM_BC_ESSENTIAL_FIELD` (Dirichlet), or `DM_BC_NATURAL` (Neumann)
7898a6ba4734SToby Isaac . name     - The BC name
789945480ffeSMatthew G. Knepley . label    - The label defining constrained points
7900bb7acecfSBarry Smith . Nv       - The number of `DMLabel` values for constrained points
790145480ffeSMatthew G. Knepley . values   - An array of values for constrained points
7902a6ba4734SToby Isaac . field    - The field to constrain
790345480ffeSMatthew G. Knepley . Nc       - The number of constrained field components (0 will constrain all fields)
7904a6ba4734SToby Isaac . comps    - An array of constrained component numbers
7905a6ba4734SToby Isaac . bcFunc   - A pointwise function giving boundary values
790656cf3b9cSMatthew G. Knepley . bcFunc_t - A pointwise function giving the time deriative of the boundary values, or NULL
7907a6ba4734SToby Isaac - ctx      - An optional user context for bcFunc
7908a6ba4734SToby Isaac 
790945480ffeSMatthew G. Knepley   Output Parameter:
791045480ffeSMatthew G. Knepley . bd - (Optional) Boundary number
791145480ffeSMatthew G. Knepley 
7912a6ba4734SToby Isaac   Options Database Keys:
7913a6ba4734SToby Isaac + -bc_<boundary name> <num>      - Overrides the boundary ids
7914a6ba4734SToby Isaac - -bc_<boundary name>_comp <num> - Overrides the boundary components
7915a6ba4734SToby Isaac 
791620f4b53cSBarry Smith   Level: intermediate
791720f4b53cSBarry Smith 
7918bb7acecfSBarry Smith   Notes:
791937fdd005SBarry Smith   Both bcFunc abd bcFunc_t will depend on the boundary condition type. If the type if `DM_BC_ESSENTIAL`, then the calling sequence is\:
792073ff1848SBarry Smith .vb
792173ff1848SBarry Smith  void bcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[])
792273ff1848SBarry Smith .ve
792356cf3b9cSMatthew G. Knepley 
7924a4e35b19SJacob Faibussowitsch   If the type is `DM_BC_ESSENTIAL_FIELD` or other _FIELD value, then the calling sequence is\:
792556cf3b9cSMatthew G. Knepley 
792620f4b53cSBarry Smith .vb
792720f4b53cSBarry Smith   void bcFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux,
792820f4b53cSBarry Smith               const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
792920f4b53cSBarry Smith               const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
793020f4b53cSBarry Smith               PetscReal time, const PetscReal x[], PetscScalar bcval[])
793120f4b53cSBarry Smith .ve
793256cf3b9cSMatthew G. Knepley + dim - the spatial dimension
793356cf3b9cSMatthew G. Knepley . Nf - the number of fields
793456cf3b9cSMatthew G. Knepley . uOff - the offset into u[] and u_t[] for each field
793556cf3b9cSMatthew G. Knepley . uOff_x - the offset into u_x[] for each field
793656cf3b9cSMatthew G. Knepley . u - each field evaluated at the current point
793756cf3b9cSMatthew G. Knepley . u_t - the time derivative of each field evaluated at the current point
793856cf3b9cSMatthew G. Knepley . u_x - the gradient of each field evaluated at the current point
793956cf3b9cSMatthew G. Knepley . aOff - the offset into a[] and a_t[] for each auxiliary field
794056cf3b9cSMatthew G. Knepley . aOff_x - the offset into a_x[] for each auxiliary field
794156cf3b9cSMatthew G. Knepley . a - each auxiliary field evaluated at the current point
794256cf3b9cSMatthew G. Knepley . a_t - the time derivative of each auxiliary field evaluated at the current point
794356cf3b9cSMatthew G. Knepley . a_x - the gradient of auxiliary each field evaluated at the current point
794456cf3b9cSMatthew G. Knepley . t - current time
794556cf3b9cSMatthew G. Knepley . x - coordinates of the current point
794656cf3b9cSMatthew G. Knepley . numConstants - number of constant parameters
794756cf3b9cSMatthew G. Knepley . constants - constant parameters
794856cf3b9cSMatthew G. Knepley - bcval - output values at the current point
794956cf3b9cSMatthew G. Knepley 
79501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DSGetBoundary()`, `PetscDSAddBoundary()`
7951a6ba4734SToby Isaac @*/
7952d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddBoundary(DM dm, DMBoundaryConditionType type, const char name[], DMLabel label, PetscInt Nv, const PetscInt values[], PetscInt field, PetscInt Nc, const PetscInt comps[], void (*bcFunc)(void), void (*bcFunc_t)(void), void *ctx, PetscInt *bd)
7953d71ae5a4SJacob Faibussowitsch {
7954e5e52638SMatthew G. Knepley   PetscDS ds;
7955a6ba4734SToby Isaac 
7956a6ba4734SToby Isaac   PetscFunctionBegin;
7957a6ba4734SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7958783e2ec8SMatthew G. Knepley   PetscValidLogicalCollectiveEnum(dm, type, 2);
795945480ffeSMatthew G. Knepley   PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 4);
796045480ffeSMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, Nv, 5);
796145480ffeSMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, field, 7);
796245480ffeSMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, Nc, 8);
796301a5d20dSJed Brown   PetscCheck(!dm->localSection, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot add boundary to DM after creating local section");
79649566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &ds));
7965799db056SMatthew G. Knepley   /* Complete label */
7966799db056SMatthew G. Knepley   if (label) {
7967799db056SMatthew G. Knepley     PetscObject  obj;
7968799db056SMatthew G. Knepley     PetscClassId id;
7969799db056SMatthew G. Knepley 
7970799db056SMatthew G. Knepley     PetscCall(DMGetField(dm, field, NULL, &obj));
7971799db056SMatthew G. Knepley     PetscCall(PetscObjectGetClassId(obj, &id));
7972799db056SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
7973799db056SMatthew G. Knepley       DM plex;
7974799db056SMatthew G. Knepley 
7975799db056SMatthew G. Knepley       PetscCall(DMConvert(dm, DMPLEX, &plex));
7976799db056SMatthew G. Knepley       if (plex) PetscCall(DMPlexLabelComplete(plex, label));
7977799db056SMatthew G. Knepley       PetscCall(DMDestroy(&plex));
7978799db056SMatthew G. Knepley     }
7979799db056SMatthew G. Knepley   }
79809566063dSJacob Faibussowitsch   PetscCall(PetscDSAddBoundary(ds, type, name, label, Nv, values, field, Nc, comps, bcFunc, bcFunc_t, ctx, bd));
79813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7982a6ba4734SToby Isaac }
7983a6ba4734SToby Isaac 
798445480ffeSMatthew G. Knepley /* TODO Remove this since now the structures are the same */
7985d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPopulateBoundary(DM dm)
7986d71ae5a4SJacob Faibussowitsch {
7987e5e52638SMatthew G. Knepley   PetscDS     ds;
7988dff059c6SToby Isaac   DMBoundary *lastnext;
7989e6f8dbb6SToby Isaac   DSBoundary  dsbound;
7990e6f8dbb6SToby Isaac 
7991e6f8dbb6SToby Isaac   PetscFunctionBegin;
79929566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &ds));
7993e5e52638SMatthew G. Knepley   dsbound = ds->boundary;
799447a1f5adSToby Isaac   if (dm->boundary) {
799547a1f5adSToby Isaac     DMBoundary next = dm->boundary;
799647a1f5adSToby Isaac 
799747a1f5adSToby Isaac     /* quick check to see if the PetscDS has changed */
79983ba16761SJacob Faibussowitsch     if (next->dsboundary == dsbound) PetscFunctionReturn(PETSC_SUCCESS);
799947a1f5adSToby Isaac     /* the PetscDS has changed: tear down and rebuild */
800047a1f5adSToby Isaac     while (next) {
800147a1f5adSToby Isaac       DMBoundary b = next;
800247a1f5adSToby Isaac 
800347a1f5adSToby Isaac       next = b->next;
80049566063dSJacob Faibussowitsch       PetscCall(PetscFree(b));
8005a6ba4734SToby Isaac     }
800647a1f5adSToby Isaac     dm->boundary = NULL;
8007a6ba4734SToby Isaac   }
800847a1f5adSToby Isaac 
8009f4f49eeaSPierre Jolivet   lastnext = &dm->boundary;
8010e6f8dbb6SToby Isaac   while (dsbound) {
8011e6f8dbb6SToby Isaac     DMBoundary dmbound;
8012e6f8dbb6SToby Isaac 
80139566063dSJacob Faibussowitsch     PetscCall(PetscNew(&dmbound));
8014e6f8dbb6SToby Isaac     dmbound->dsboundary = dsbound;
801545480ffeSMatthew G. Knepley     dmbound->label      = dsbound->label;
801647a1f5adSToby Isaac     /* push on the back instead of the front so that it is in the same order as in the PetscDS */
8017dff059c6SToby Isaac     *lastnext = dmbound;
8018f4f49eeaSPierre Jolivet     lastnext  = &dmbound->next;
8019dff059c6SToby Isaac     dsbound   = dsbound->next;
8020a6ba4734SToby Isaac   }
80213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8022a6ba4734SToby Isaac }
8023a6ba4734SToby Isaac 
8024bb7acecfSBarry Smith /* TODO: missing manual page */
8025d71ae5a4SJacob Faibussowitsch PetscErrorCode DMIsBoundaryPoint(DM dm, PetscInt point, PetscBool *isBd)
8026d71ae5a4SJacob Faibussowitsch {
8027b95f2879SToby Isaac   DMBoundary b;
8028a6ba4734SToby Isaac 
8029a6ba4734SToby Isaac   PetscFunctionBegin;
8030a6ba4734SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
80314f572ea9SToby Isaac   PetscAssertPointer(isBd, 3);
8032a6ba4734SToby Isaac   *isBd = PETSC_FALSE;
80339566063dSJacob Faibussowitsch   PetscCall(DMPopulateBoundary(dm));
8034b95f2879SToby Isaac   b = dm->boundary;
8035a6ba4734SToby Isaac   while (b && !(*isBd)) {
8036e6f8dbb6SToby Isaac     DMLabel    label = b->label;
8037e6f8dbb6SToby Isaac     DSBoundary dsb   = b->dsboundary;
8038a6ba4734SToby Isaac     PetscInt   i;
8039a6ba4734SToby Isaac 
804045480ffeSMatthew G. Knepley     if (label) {
80419566063dSJacob Faibussowitsch       for (i = 0; i < dsb->Nv && !(*isBd); ++i) PetscCall(DMLabelStratumHasPoint(label, dsb->values[i], point, isBd));
8042a6ba4734SToby Isaac     }
8043a6ba4734SToby Isaac     b = b->next;
8044a6ba4734SToby Isaac   }
80453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8046a6ba4734SToby Isaac }
80474d6f44ffSToby Isaac 
80484d6f44ffSToby Isaac /*@C
8049bb7acecfSBarry Smith   DMProjectFunction - This projects the given function into the function space provided by a `DM`, putting the coefficients in a global vector.
8050a6e0b375SMatthew G. Knepley 
805120f4b53cSBarry Smith   Collective
80524d6f44ffSToby Isaac 
80534d6f44ffSToby Isaac   Input Parameters:
8054bb7acecfSBarry Smith + dm    - The `DM`
80550709b2feSToby Isaac . time  - The time
80564d6f44ffSToby Isaac . funcs - The coordinate functions to evaluate, one per field
80574d6f44ffSToby Isaac . ctxs  - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
80584d6f44ffSToby Isaac - mode  - The insertion mode for values
80594d6f44ffSToby Isaac 
80604d6f44ffSToby Isaac   Output Parameter:
80614d6f44ffSToby Isaac . X - vector
80624d6f44ffSToby Isaac 
806320f4b53cSBarry Smith   Calling sequence of `funcs`:
80644d6f44ffSToby Isaac + dim  - The spatial dimension
80658ec8862eSJed Brown . time - The time at which to sample
80664d6f44ffSToby Isaac . x    - The coordinates
806777b739a6SMatthew Knepley . Nc   - The number of components
80684d6f44ffSToby Isaac . u    - The output field values
80694d6f44ffSToby Isaac - ctx  - optional user-defined function context
80704d6f44ffSToby Isaac 
80714d6f44ffSToby Isaac   Level: developer
80724d6f44ffSToby Isaac 
8073bb7acecfSBarry Smith   Developer Notes:
8074bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8075bb7acecfSBarry Smith 
8076bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8077bb7acecfSBarry Smith 
80781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
80794d6f44ffSToby Isaac @*/
8080a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunction(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X)
8081d71ae5a4SJacob Faibussowitsch {
80824d6f44ffSToby Isaac   Vec localX;
80834d6f44ffSToby Isaac 
80844d6f44ffSToby Isaac   PetscFunctionBegin;
80854d6f44ffSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8086708be2fdSJed Brown   PetscCall(PetscLogEventBegin(DM_ProjectFunction, dm, X, 0, 0));
80879566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
8088f60fa741SMatthew G. Knepley   PetscCall(VecSet(localX, 0.));
80899566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, mode, localX));
80909566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
80919566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
80929566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
8093708be2fdSJed Brown   PetscCall(PetscLogEventEnd(DM_ProjectFunction, dm, X, 0, 0));
80943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
80954d6f44ffSToby Isaac }
80964d6f44ffSToby Isaac 
8097a6e0b375SMatthew G. Knepley /*@C
8098bb7acecfSBarry Smith   DMProjectFunctionLocal - This projects the given function into the function space provided by a `DM`, putting the coefficients in a local vector.
8099a6e0b375SMatthew G. Knepley 
810020f4b53cSBarry Smith   Not Collective
8101a6e0b375SMatthew G. Knepley 
8102a6e0b375SMatthew G. Knepley   Input Parameters:
8103bb7acecfSBarry Smith + dm    - The `DM`
8104a6e0b375SMatthew G. Knepley . time  - The time
8105a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field
8106a6e0b375SMatthew G. Knepley . ctxs  - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
8107a6e0b375SMatthew G. Knepley - mode  - The insertion mode for values
8108a6e0b375SMatthew G. Knepley 
8109a6e0b375SMatthew G. Knepley   Output Parameter:
8110a6e0b375SMatthew G. Knepley . localX - vector
8111a6e0b375SMatthew G. Knepley 
811220f4b53cSBarry Smith   Calling sequence of `funcs`:
8113a6e0b375SMatthew G. Knepley + dim  - The spatial dimension
8114a4e35b19SJacob Faibussowitsch . time - The current timestep
8115a6e0b375SMatthew G. Knepley . x    - The coordinates
811677b739a6SMatthew Knepley . Nc   - The number of components
8117a6e0b375SMatthew G. Knepley . u    - The output field values
8118a6e0b375SMatthew G. Knepley - ctx  - optional user-defined function context
8119a6e0b375SMatthew G. Knepley 
8120a6e0b375SMatthew G. Knepley   Level: developer
8121a6e0b375SMatthew G. Knepley 
8122bb7acecfSBarry Smith   Developer Notes:
8123bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8124bb7acecfSBarry Smith 
8125bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8126bb7acecfSBarry Smith 
81271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
8128a6e0b375SMatthew G. Knepley @*/
8129a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX)
8130d71ae5a4SJacob Faibussowitsch {
81314d6f44ffSToby Isaac   PetscFunctionBegin;
81324d6f44ffSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8133064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 6);
8134fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectfunctionlocal, time, funcs, ctxs, mode, localX);
81353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
81364d6f44ffSToby Isaac }
81374d6f44ffSToby Isaac 
8138a6e0b375SMatthew G. Knepley /*@C
8139bb7acecfSBarry Smith   DMProjectFunctionLabel - This projects the given function into the function space provided by the `DM`, putting the coefficients in a global vector, setting values only for points in the given label.
8140a6e0b375SMatthew G. Knepley 
814120f4b53cSBarry Smith   Collective
8142a6e0b375SMatthew G. Knepley 
8143a6e0b375SMatthew G. Knepley   Input Parameters:
8144bb7acecfSBarry Smith + dm     - The `DM`
8145a6e0b375SMatthew G. Knepley . time   - The time
8146a4e35b19SJacob Faibussowitsch . numIds - The number of ids
8147a4e35b19SJacob Faibussowitsch . ids    - The ids
8148a4e35b19SJacob Faibussowitsch . Nc     - The number of components
8149a4e35b19SJacob Faibussowitsch . comps  - The components
8150bb7acecfSBarry Smith . label  - The `DMLabel` selecting the portion of the mesh for projection
8151a6e0b375SMatthew G. Knepley . funcs  - The coordinate functions to evaluate, one per field
8152bb7acecfSBarry Smith . ctxs   - Optional array of contexts to pass to each coordinate function.  ctxs may be null.
8153a6e0b375SMatthew G. Knepley - mode   - The insertion mode for values
8154a6e0b375SMatthew G. Knepley 
8155a6e0b375SMatthew G. Knepley   Output Parameter:
8156a6e0b375SMatthew G. Knepley . X - vector
8157a6e0b375SMatthew G. Knepley 
815820f4b53cSBarry Smith   Calling sequence of `funcs`:
8159a6e0b375SMatthew G. Knepley + dim  - The spatial dimension
8160a4e35b19SJacob Faibussowitsch . time - The current timestep
8161a6e0b375SMatthew G. Knepley . x    - The coordinates
816277b739a6SMatthew Knepley . Nc   - The number of components
8163a6e0b375SMatthew G. Knepley . u    - The output field values
8164a6e0b375SMatthew G. Knepley - ctx  - optional user-defined function context
8165a6e0b375SMatthew G. Knepley 
8166a6e0b375SMatthew G. Knepley   Level: developer
8167a6e0b375SMatthew G. Knepley 
8168bb7acecfSBarry Smith   Developer Notes:
8169bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8170bb7acecfSBarry Smith 
8171bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8172bb7acecfSBarry Smith 
81731cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`, `DMComputeL2Diff()`
8174a6e0b375SMatthew G. Knepley @*/
8175a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X)
8176d71ae5a4SJacob Faibussowitsch {
81772c53366bSMatthew G. Knepley   Vec localX;
81782c53366bSMatthew G. Knepley 
81792c53366bSMatthew G. Knepley   PetscFunctionBegin;
81802c53366bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
81819566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
8182f60fa741SMatthew G. Knepley   PetscCall(VecSet(localX, 0.));
81839566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX));
81849566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
81859566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
81869566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
81873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
81882c53366bSMatthew G. Knepley }
81892c53366bSMatthew G. Knepley 
8190a6e0b375SMatthew G. Knepley /*@C
8191bb7acecfSBarry Smith   DMProjectFunctionLabelLocal - This projects the given function into the function space provided by the `DM`, putting the coefficients in a local vector, setting values only for points in the given label.
8192a6e0b375SMatthew G. Knepley 
819320f4b53cSBarry Smith   Not Collective
8194a6e0b375SMatthew G. Knepley 
8195a6e0b375SMatthew G. Knepley   Input Parameters:
8196bb7acecfSBarry Smith + dm     - The `DM`
8197a6e0b375SMatthew G. Knepley . time   - The time
8198bb7acecfSBarry Smith . label  - The `DMLabel` selecting the portion of the mesh for projection
8199a4e35b19SJacob Faibussowitsch . numIds - The number of ids
8200a4e35b19SJacob Faibussowitsch . ids    - The ids
8201a4e35b19SJacob Faibussowitsch . Nc     - The number of components
8202a4e35b19SJacob Faibussowitsch . comps  - The components
8203a6e0b375SMatthew G. Knepley . funcs  - The coordinate functions to evaluate, one per field
8204a6e0b375SMatthew G. Knepley . ctxs   - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
8205a6e0b375SMatthew G. Knepley - mode   - The insertion mode for values
8206a6e0b375SMatthew G. Knepley 
8207a6e0b375SMatthew G. Knepley   Output Parameter:
8208a6e0b375SMatthew G. Knepley . localX - vector
8209a6e0b375SMatthew G. Knepley 
821020f4b53cSBarry Smith   Calling sequence of `funcs`:
8211a6e0b375SMatthew G. Knepley + dim  - The spatial dimension
8212a4e35b19SJacob Faibussowitsch . time - The current time
8213a6e0b375SMatthew G. Knepley . x    - The coordinates
821477b739a6SMatthew Knepley . Nc   - The number of components
8215a6e0b375SMatthew G. Knepley . u    - The output field values
8216a6e0b375SMatthew G. Knepley - ctx  - optional user-defined function context
8217a6e0b375SMatthew G. Knepley 
8218a6e0b375SMatthew G. Knepley   Level: developer
8219a6e0b375SMatthew G. Knepley 
8220bb7acecfSBarry Smith   Developer Notes:
8221bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8222bb7acecfSBarry Smith 
8223bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8224bb7acecfSBarry Smith 
82251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
8226a6e0b375SMatthew G. Knepley @*/
8227a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX)
8228d71ae5a4SJacob Faibussowitsch {
82294d6f44ffSToby Isaac   PetscFunctionBegin;
82304d6f44ffSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8231064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
8232fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectfunctionlabellocal, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX);
82333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
82344d6f44ffSToby Isaac }
82352716604bSToby Isaac 
8236a6e0b375SMatthew G. Knepley /*@C
8237bb7acecfSBarry Smith   DMProjectFieldLocal - This projects the given function of the input fields into the function space provided by the `DM`, putting the coefficients in a local vector.
8238a6e0b375SMatthew G. Knepley 
823920f4b53cSBarry Smith   Not Collective
8240a6e0b375SMatthew G. Knepley 
8241a6e0b375SMatthew G. Knepley   Input Parameters:
8242bb7acecfSBarry Smith + dm     - The `DM`
8243a6e0b375SMatthew G. Knepley . time   - The time
824420f4b53cSBarry Smith . localU - The input field vector; may be `NULL` if projection is defined purely by coordinates
8245a6e0b375SMatthew G. Knepley . funcs  - The functions to evaluate, one per field
8246a6e0b375SMatthew G. Knepley - mode   - The insertion mode for values
8247a6e0b375SMatthew G. Knepley 
8248a6e0b375SMatthew G. Knepley   Output Parameter:
8249a6e0b375SMatthew G. Knepley . localX - The output vector
8250a6e0b375SMatthew G. Knepley 
825120f4b53cSBarry Smith   Calling sequence of `funcs`:
8252a6e0b375SMatthew G. Knepley + dim          - The spatial dimension
8253a6e0b375SMatthew G. Knepley . Nf           - The number of input fields
8254a6e0b375SMatthew G. Knepley . NfAux        - The number of input auxiliary fields
8255a6e0b375SMatthew G. Knepley . uOff         - The offset of each field in u[]
8256a6e0b375SMatthew G. Knepley . uOff_x       - The offset of each field in u_x[]
8257a6e0b375SMatthew G. Knepley . u            - The field values at this point in space
8258a6e0b375SMatthew G. Knepley . u_t          - The field time derivative at this point in space (or NULL)
8259a6e0b375SMatthew G. Knepley . u_x          - The field derivatives at this point in space
8260a6e0b375SMatthew G. Knepley . aOff         - The offset of each auxiliary field in u[]
8261a6e0b375SMatthew G. Knepley . aOff_x       - The offset of each auxiliary field in u_x[]
8262a6e0b375SMatthew G. Knepley . a            - The auxiliary field values at this point in space
8263a6e0b375SMatthew G. Knepley . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8264a6e0b375SMatthew G. Knepley . a_x          - The auxiliary field derivatives at this point in space
8265a6e0b375SMatthew G. Knepley . t            - The current time
8266a6e0b375SMatthew G. Knepley . x            - The coordinates of this point
8267a6e0b375SMatthew G. Knepley . numConstants - The number of constants
8268a6e0b375SMatthew G. Knepley . constants    - The value of each constant
8269a6e0b375SMatthew G. Knepley - f            - The value of the function at this point in space
8270a6e0b375SMatthew G. Knepley 
827173ff1848SBarry Smith   Level: intermediate
827273ff1848SBarry Smith 
8273bb7acecfSBarry Smith   Note:
8274bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8275bb7acecfSBarry Smith   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8276bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8277a6e0b375SMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8278a6e0b375SMatthew G. Knepley 
8279bb7acecfSBarry Smith   Developer Notes:
8280bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8281bb7acecfSBarry Smith 
8282bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8283bb7acecfSBarry Smith 
8284a4e35b19SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`,
8285a4e35b19SJacob Faibussowitsch `DMProjectFunction()`, `DMComputeL2Diff()`
8286a6e0b375SMatthew G. Knepley @*/
8287a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLocal(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX)
8288d71ae5a4SJacob Faibussowitsch {
82898c6c5593SMatthew G. Knepley   PetscFunctionBegin;
82908c6c5593SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8291eb8f539aSJed Brown   if (localU) PetscValidHeaderSpecific(localU, VEC_CLASSID, 3);
82928c6c5593SMatthew G. Knepley   PetscValidHeaderSpecific(localX, VEC_CLASSID, 6);
8293fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectfieldlocal, time, localU, funcs, mode, localX);
82943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
82958c6c5593SMatthew G. Knepley }
82968c6c5593SMatthew G. Knepley 
8297a6e0b375SMatthew G. Knepley /*@C
8298a6e0b375SMatthew G. Knepley   DMProjectFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain specified by the label.
8299a6e0b375SMatthew G. Knepley 
830020f4b53cSBarry Smith   Not Collective
8301a6e0b375SMatthew G. Knepley 
8302a6e0b375SMatthew G. Knepley   Input Parameters:
8303bb7acecfSBarry Smith + dm     - The `DM`
8304a6e0b375SMatthew G. Knepley . time   - The time
8305bb7acecfSBarry Smith . label  - The `DMLabel` marking the portion of the domain to output
8306a6e0b375SMatthew G. Knepley . numIds - The number of label ids to use
8307a6e0b375SMatthew G. Knepley . ids    - The label ids to use for marking
8308bb7acecfSBarry Smith . Nc     - The number of components to set in the output, or `PETSC_DETERMINE` for all components
830920f4b53cSBarry Smith . comps  - The components to set in the output, or `NULL` for all components
8310a6e0b375SMatthew G. Knepley . localU - The input field vector
8311a6e0b375SMatthew G. Knepley . funcs  - The functions to evaluate, one per field
8312a6e0b375SMatthew G. Knepley - mode   - The insertion mode for values
8313a6e0b375SMatthew G. Knepley 
8314a6e0b375SMatthew G. Knepley   Output Parameter:
8315a6e0b375SMatthew G. Knepley . localX - The output vector
8316a6e0b375SMatthew G. Knepley 
831720f4b53cSBarry Smith   Calling sequence of `funcs`:
8318a6e0b375SMatthew G. Knepley + dim          - The spatial dimension
8319a6e0b375SMatthew G. Knepley . Nf           - The number of input fields
8320a6e0b375SMatthew G. Knepley . NfAux        - The number of input auxiliary fields
8321a6e0b375SMatthew G. Knepley . uOff         - The offset of each field in u[]
8322a6e0b375SMatthew G. Knepley . uOff_x       - The offset of each field in u_x[]
8323a6e0b375SMatthew G. Knepley . u            - The field values at this point in space
8324a6e0b375SMatthew G. Knepley . u_t          - The field time derivative at this point in space (or NULL)
8325a6e0b375SMatthew G. Knepley . u_x          - The field derivatives at this point in space
8326a6e0b375SMatthew G. Knepley . aOff         - The offset of each auxiliary field in u[]
8327a6e0b375SMatthew G. Knepley . aOff_x       - The offset of each auxiliary field in u_x[]
8328a6e0b375SMatthew G. Knepley . a            - The auxiliary field values at this point in space
8329a6e0b375SMatthew G. Knepley . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8330a6e0b375SMatthew G. Knepley . a_x          - The auxiliary field derivatives at this point in space
8331a6e0b375SMatthew G. Knepley . t            - The current time
8332a6e0b375SMatthew G. Knepley . x            - The coordinates of this point
8333a6e0b375SMatthew G. Knepley . numConstants - The number of constants
8334a6e0b375SMatthew G. Knepley . constants    - The value of each constant
8335a6e0b375SMatthew G. Knepley - f            - The value of the function at this point in space
8336a6e0b375SMatthew G. Knepley 
833773ff1848SBarry Smith   Level: intermediate
833873ff1848SBarry Smith 
8339bb7acecfSBarry Smith   Note:
8340bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8341bb7acecfSBarry Smith   The input `DM`, attached to localU, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8342bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8343a6e0b375SMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8344a6e0b375SMatthew G. Knepley 
8345bb7acecfSBarry Smith   Developer Notes:
8346bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8347bb7acecfSBarry Smith 
8348bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8349bb7acecfSBarry Smith 
83501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabel()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8351a6e0b375SMatthew G. Knepley @*/
8352a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX)
8353d71ae5a4SJacob Faibussowitsch {
83548c6c5593SMatthew G. Knepley   PetscFunctionBegin;
83558c6c5593SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8356064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localU, VEC_CLASSID, 8);
8357064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
8358fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX);
83593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
83608c6c5593SMatthew G. Knepley }
83618c6c5593SMatthew G. Knepley 
83622716604bSToby Isaac /*@C
8363d29d7c6eSMatthew G. Knepley   DMProjectFieldLabel - This projects the given function of the input fields into the function space provided, putting the coefficients in a global vector, calculating only over the portion of the domain specified by the label.
8364d29d7c6eSMatthew G. Knepley 
836520f4b53cSBarry Smith   Not Collective
8366d29d7c6eSMatthew G. Knepley 
8367d29d7c6eSMatthew G. Knepley   Input Parameters:
8368bb7acecfSBarry Smith + dm     - The `DM`
8369d29d7c6eSMatthew G. Knepley . time   - The time
8370bb7acecfSBarry Smith . label  - The `DMLabel` marking the portion of the domain to output
8371d29d7c6eSMatthew G. Knepley . numIds - The number of label ids to use
8372d29d7c6eSMatthew G. Knepley . ids    - The label ids to use for marking
8373bb7acecfSBarry Smith . Nc     - The number of components to set in the output, or `PETSC_DETERMINE` for all components
837420f4b53cSBarry Smith . comps  - The components to set in the output, or `NULL` for all components
8375d29d7c6eSMatthew G. Knepley . U      - The input field vector
8376d29d7c6eSMatthew G. Knepley . funcs  - The functions to evaluate, one per field
8377d29d7c6eSMatthew G. Knepley - mode   - The insertion mode for values
8378d29d7c6eSMatthew G. Knepley 
8379d29d7c6eSMatthew G. Knepley   Output Parameter:
8380d29d7c6eSMatthew G. Knepley . X - The output vector
8381d29d7c6eSMatthew G. Knepley 
838220f4b53cSBarry Smith   Calling sequence of `funcs`:
8383d29d7c6eSMatthew G. Knepley + dim          - The spatial dimension
8384d29d7c6eSMatthew G. Knepley . Nf           - The number of input fields
8385d29d7c6eSMatthew G. Knepley . NfAux        - The number of input auxiliary fields
8386d29d7c6eSMatthew G. Knepley . uOff         - The offset of each field in u[]
8387d29d7c6eSMatthew G. Knepley . uOff_x       - The offset of each field in u_x[]
8388d29d7c6eSMatthew G. Knepley . u            - The field values at this point in space
8389d29d7c6eSMatthew G. Knepley . u_t          - The field time derivative at this point in space (or NULL)
8390d29d7c6eSMatthew G. Knepley . u_x          - The field derivatives at this point in space
8391d29d7c6eSMatthew G. Knepley . aOff         - The offset of each auxiliary field in u[]
8392d29d7c6eSMatthew G. Knepley . aOff_x       - The offset of each auxiliary field in u_x[]
8393d29d7c6eSMatthew G. Knepley . a            - The auxiliary field values at this point in space
8394d29d7c6eSMatthew G. Knepley . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8395d29d7c6eSMatthew G. Knepley . a_x          - The auxiliary field derivatives at this point in space
8396d29d7c6eSMatthew G. Knepley . t            - The current time
8397d29d7c6eSMatthew G. Knepley . x            - The coordinates of this point
8398d29d7c6eSMatthew G. Knepley . numConstants - The number of constants
8399d29d7c6eSMatthew G. Knepley . constants    - The value of each constant
8400d29d7c6eSMatthew G. Knepley - f            - The value of the function at this point in space
8401d29d7c6eSMatthew G. Knepley 
840273ff1848SBarry Smith   Level: intermediate
840373ff1848SBarry Smith 
8404bb7acecfSBarry Smith   Note:
8405bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8406bb7acecfSBarry Smith   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8407bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8408d29d7c6eSMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8409d29d7c6eSMatthew G. Knepley 
8410bb7acecfSBarry Smith   Developer Notes:
8411bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8412bb7acecfSBarry Smith 
8413bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8414bb7acecfSBarry Smith 
84151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8416d29d7c6eSMatthew G. Knepley @*/
8417a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec U, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec X)
8418d71ae5a4SJacob Faibussowitsch {
8419d29d7c6eSMatthew G. Knepley   DM  dmIn;
8420d29d7c6eSMatthew G. Knepley   Vec localU, localX;
8421d29d7c6eSMatthew G. Knepley 
8422d29d7c6eSMatthew G. Knepley   PetscFunctionBegin;
8423d29d7c6eSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8424d29d7c6eSMatthew G. Knepley   PetscCall(VecGetDM(U, &dmIn));
8425d29d7c6eSMatthew G. Knepley   PetscCall(DMGetLocalVector(dmIn, &localU));
8426d29d7c6eSMatthew G. Knepley   PetscCall(DMGetLocalVector(dm, &localX));
8427f60fa741SMatthew G. Knepley   PetscCall(VecSet(localX, 0.));
842872fc1ce5SMatthew G. Knepley   PetscCall(DMGlobalToLocalBegin(dmIn, U, mode, localU));
842972fc1ce5SMatthew G. Knepley   PetscCall(DMGlobalToLocalEnd(dmIn, U, mode, localU));
8430d29d7c6eSMatthew G. Knepley   PetscCall(DMProjectFieldLabelLocal(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX));
8431d29d7c6eSMatthew G. Knepley   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
8432d29d7c6eSMatthew G. Knepley   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
8433d29d7c6eSMatthew G. Knepley   PetscCall(DMRestoreLocalVector(dm, &localX));
8434d29d7c6eSMatthew G. Knepley   PetscCall(DMRestoreLocalVector(dmIn, &localU));
84353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8436d29d7c6eSMatthew G. Knepley }
8437d29d7c6eSMatthew G. Knepley 
8438d29d7c6eSMatthew G. Knepley /*@C
8439ece3a9fcSMatthew G. Knepley   DMProjectBdFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain boundary specified by the label.
8440ece3a9fcSMatthew G. Knepley 
844120f4b53cSBarry Smith   Not Collective
8442ece3a9fcSMatthew G. Knepley 
8443ece3a9fcSMatthew G. Knepley   Input Parameters:
8444bb7acecfSBarry Smith + dm     - The `DM`
8445ece3a9fcSMatthew G. Knepley . time   - The time
8446bb7acecfSBarry Smith . label  - The `DMLabel` marking the portion of the domain boundary to output
8447ece3a9fcSMatthew G. Knepley . numIds - The number of label ids to use
8448ece3a9fcSMatthew G. Knepley . ids    - The label ids to use for marking
8449bb7acecfSBarry Smith . Nc     - The number of components to set in the output, or `PETSC_DETERMINE` for all components
845020f4b53cSBarry Smith . comps  - The components to set in the output, or `NULL` for all components
8451ece3a9fcSMatthew G. Knepley . localU - The input field vector
8452ece3a9fcSMatthew G. Knepley . funcs  - The functions to evaluate, one per field
8453ece3a9fcSMatthew G. Knepley - mode   - The insertion mode for values
8454ece3a9fcSMatthew G. Knepley 
8455ece3a9fcSMatthew G. Knepley   Output Parameter:
8456ece3a9fcSMatthew G. Knepley . localX - The output vector
8457ece3a9fcSMatthew G. Knepley 
845820f4b53cSBarry Smith   Calling sequence of `funcs`:
8459ece3a9fcSMatthew G. Knepley + dim          - The spatial dimension
8460ece3a9fcSMatthew G. Knepley . Nf           - The number of input fields
8461ece3a9fcSMatthew G. Knepley . NfAux        - The number of input auxiliary fields
8462ece3a9fcSMatthew G. Knepley . uOff         - The offset of each field in u[]
8463ece3a9fcSMatthew G. Knepley . uOff_x       - The offset of each field in u_x[]
8464ece3a9fcSMatthew G. Knepley . u            - The field values at this point in space
8465ece3a9fcSMatthew G. Knepley . u_t          - The field time derivative at this point in space (or NULL)
8466ece3a9fcSMatthew G. Knepley . u_x          - The field derivatives at this point in space
8467ece3a9fcSMatthew G. Knepley . aOff         - The offset of each auxiliary field in u[]
8468ece3a9fcSMatthew G. Knepley . aOff_x       - The offset of each auxiliary field in u_x[]
8469ece3a9fcSMatthew G. Knepley . a            - The auxiliary field values at this point in space
8470ece3a9fcSMatthew G. Knepley . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8471ece3a9fcSMatthew G. Knepley . a_x          - The auxiliary field derivatives at this point in space
8472ece3a9fcSMatthew G. Knepley . t            - The current time
8473ece3a9fcSMatthew G. Knepley . x            - The coordinates of this point
8474ece3a9fcSMatthew G. Knepley . n            - The face normal
8475ece3a9fcSMatthew G. Knepley . numConstants - The number of constants
8476ece3a9fcSMatthew G. Knepley . constants    - The value of each constant
8477ece3a9fcSMatthew G. Knepley - f            - The value of the function at this point in space
8478ece3a9fcSMatthew G. Knepley 
847973ff1848SBarry Smith   Level: intermediate
848073ff1848SBarry Smith 
8481ece3a9fcSMatthew G. Knepley   Note:
8482bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8483bb7acecfSBarry Smith   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8484bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8485ece3a9fcSMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8486ece3a9fcSMatthew G. Knepley 
8487bb7acecfSBarry Smith   Developer Notes:
8488bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8489bb7acecfSBarry Smith 
8490bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8491bb7acecfSBarry Smith 
84921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8493ece3a9fcSMatthew G. Knepley @*/
8494a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectBdFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX)
8495d71ae5a4SJacob Faibussowitsch {
8496ece3a9fcSMatthew G. Knepley   PetscFunctionBegin;
8497ece3a9fcSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8498064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localU, VEC_CLASSID, 8);
8499064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
8500fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectbdfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX);
85013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8502ece3a9fcSMatthew G. Knepley }
8503ece3a9fcSMatthew G. Knepley 
8504ece3a9fcSMatthew G. Knepley /*@C
85052716604bSToby Isaac   DMComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h.
85062716604bSToby Isaac 
850720f4b53cSBarry Smith   Collective
8508bb7acecfSBarry Smith 
85092716604bSToby Isaac   Input Parameters:
8510bb7acecfSBarry Smith + dm    - The `DM`
85110709b2feSToby Isaac . time  - The time
85122716604bSToby Isaac . funcs - The functions to evaluate for each field component
85132716604bSToby Isaac . ctxs  - Optional array of contexts to pass to each function, or NULL.
8514574a98acSMatthew G. Knepley - X     - The coefficient vector u_h, a global vector
85152716604bSToby Isaac 
85162716604bSToby Isaac   Output Parameter:
85172716604bSToby Isaac . diff - The diff ||u - u_h||_2
85182716604bSToby Isaac 
85192716604bSToby Isaac   Level: developer
85202716604bSToby Isaac 
8521bb7acecfSBarry Smith   Developer Notes:
8522bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8523bb7acecfSBarry Smith 
8524bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8525bb7acecfSBarry Smith 
85261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
85272716604bSToby Isaac @*/
8528d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
8529d71ae5a4SJacob Faibussowitsch {
85302716604bSToby Isaac   PetscFunctionBegin;
85312716604bSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8532b698f381SToby Isaac   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
8533fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, computel2diff, time, funcs, ctxs, X, diff);
85343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
85352716604bSToby Isaac }
8536b698f381SToby Isaac 
8537b698f381SToby Isaac /*@C
8538b698f381SToby Isaac   DMComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h.
8539b698f381SToby Isaac 
854020f4b53cSBarry Smith   Collective
8541d083f849SBarry Smith 
8542b698f381SToby Isaac   Input Parameters:
8543bb7acecfSBarry Smith + dm    - The `DM`
8544a4e35b19SJacob Faibussowitsch . time  - The time
8545b698f381SToby Isaac . funcs - The gradient functions to evaluate for each field component
8546b698f381SToby Isaac . ctxs  - Optional array of contexts to pass to each function, or NULL.
8547574a98acSMatthew G. Knepley . X     - The coefficient vector u_h, a global vector
8548b698f381SToby Isaac - n     - The vector to project along
8549b698f381SToby Isaac 
8550b698f381SToby Isaac   Output Parameter:
8551b698f381SToby Isaac . diff - The diff ||(grad u - grad u_h) . n||_2
8552b698f381SToby Isaac 
8553b698f381SToby Isaac   Level: developer
8554b698f381SToby Isaac 
8555bb7acecfSBarry Smith   Developer Notes:
8556bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8557bb7acecfSBarry Smith 
8558bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8559bb7acecfSBarry Smith 
85601cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMComputeL2FieldDiff()`
8561b698f381SToby Isaac @*/
8562d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff)
8563d71ae5a4SJacob Faibussowitsch {
8564b698f381SToby Isaac   PetscFunctionBegin;
8565b698f381SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8566b698f381SToby Isaac   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
8567fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, computel2gradientdiff, time, funcs, ctxs, X, n, diff);
85683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8569b698f381SToby Isaac }
8570b698f381SToby Isaac 
85712a16baeaSToby Isaac /*@C
85722a16baeaSToby Isaac   DMComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components.
85732a16baeaSToby Isaac 
857420f4b53cSBarry Smith   Collective
8575d083f849SBarry Smith 
85762a16baeaSToby Isaac   Input Parameters:
8577bb7acecfSBarry Smith + dm    - The `DM`
85782a16baeaSToby Isaac . time  - The time
85792a16baeaSToby Isaac . funcs - The functions to evaluate for each field component
85802a16baeaSToby Isaac . ctxs  - Optional array of contexts to pass to each function, or NULL.
8581574a98acSMatthew G. Knepley - X     - The coefficient vector u_h, a global vector
85822a16baeaSToby Isaac 
85832a16baeaSToby Isaac   Output Parameter:
85842a16baeaSToby Isaac . diff - The array of differences, ||u^f - u^f_h||_2
85852a16baeaSToby Isaac 
85862a16baeaSToby Isaac   Level: developer
85872a16baeaSToby Isaac 
8588bb7acecfSBarry Smith   Developer Notes:
8589bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8590bb7acecfSBarry Smith 
8591bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8592bb7acecfSBarry Smith 
859342747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2GradientDiff()`
85942a16baeaSToby Isaac @*/
8595d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[])
8596d71ae5a4SJacob Faibussowitsch {
85972a16baeaSToby Isaac   PetscFunctionBegin;
85982a16baeaSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
85992a16baeaSToby Isaac   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
8600fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, computel2fielddiff, time, funcs, ctxs, X, diff);
86013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
86022a16baeaSToby Isaac }
86032a16baeaSToby Isaac 
8604df0b854cSToby Isaac /*@C
8605bb7acecfSBarry Smith   DMGetNeighbors - Gets an array containing the MPI ranks of all the processes neighbors
8606502a2867SDave May 
8607502a2867SDave May   Not Collective
8608502a2867SDave May 
8609502a2867SDave May   Input Parameter:
8610bb7acecfSBarry Smith . dm - The `DM`
8611502a2867SDave May 
86120a19bb7dSprj-   Output Parameters:
86130a19bb7dSprj- + nranks - the number of neighbours
86140a19bb7dSprj- - ranks  - the neighbors ranks
8615502a2867SDave May 
86169bdbcad8SBarry Smith   Level: beginner
86179bdbcad8SBarry Smith 
8618bb7acecfSBarry Smith   Note:
8619bb7acecfSBarry Smith   Do not free the array, it is freed when the `DM` is destroyed.
8620502a2867SDave May 
86211cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDAGetNeighbors()`, `PetscSFGetRootRanks()`
8622502a2867SDave May @*/
8623d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNeighbors(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[])
8624d71ae5a4SJacob Faibussowitsch {
8625502a2867SDave May   PetscFunctionBegin;
8626502a2867SDave May   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8627fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, getneighbors, nranks, ranks);
86283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8629502a2867SDave May }
8630502a2867SDave May 
8631531c7667SBarry Smith #include <petsc/private/matimpl.h> /* Needed because of coloring->ctype below */
8632531c7667SBarry Smith 
8633531c7667SBarry Smith /*
8634531c7667SBarry Smith     Converts the input vector to a ghosted vector and then calls the standard coloring code.
86352b6f951bSStefano Zampini     This must be a different function because it requires DM which is not defined in the Mat library
8636531c7667SBarry Smith */
863766976f2fSJacob Faibussowitsch static PetscErrorCode MatFDColoringApply_AIJDM(Mat J, MatFDColoring coloring, Vec x1, void *sctx)
8638d71ae5a4SJacob Faibussowitsch {
8639531c7667SBarry Smith   PetscFunctionBegin;
8640531c7667SBarry Smith   if (coloring->ctype == IS_COLORING_LOCAL) {
8641531c7667SBarry Smith     Vec x1local;
8642531c7667SBarry Smith     DM  dm;
86439566063dSJacob Faibussowitsch     PetscCall(MatGetDM(J, &dm));
86447a8be351SBarry Smith     PetscCheck(dm, PetscObjectComm((PetscObject)J), PETSC_ERR_ARG_INCOMP, "IS_COLORING_LOCAL requires a DM");
86459566063dSJacob Faibussowitsch     PetscCall(DMGetLocalVector(dm, &x1local));
86469566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalBegin(dm, x1, INSERT_VALUES, x1local));
86479566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalEnd(dm, x1, INSERT_VALUES, x1local));
8648531c7667SBarry Smith     x1 = x1local;
8649531c7667SBarry Smith   }
86509566063dSJacob Faibussowitsch   PetscCall(MatFDColoringApply_AIJ(J, coloring, x1, sctx));
8651531c7667SBarry Smith   if (coloring->ctype == IS_COLORING_LOCAL) {
8652531c7667SBarry Smith     DM dm;
86539566063dSJacob Faibussowitsch     PetscCall(MatGetDM(J, &dm));
86549566063dSJacob Faibussowitsch     PetscCall(DMRestoreLocalVector(dm, &x1));
8655531c7667SBarry Smith   }
86563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8657531c7667SBarry Smith }
8658531c7667SBarry Smith 
8659531c7667SBarry Smith /*@
8660bb7acecfSBarry Smith   MatFDColoringUseDM - allows a `MatFDColoring` object to use the `DM` associated with the matrix to compute a `IS_COLORING_LOCAL` coloring
8661531c7667SBarry Smith 
8662a4e35b19SJacob Faibussowitsch   Input Parameters:
8663a4e35b19SJacob Faibussowitsch + coloring   - The matrix to get the `DM` from
8664a4e35b19SJacob Faibussowitsch - fdcoloring - the `MatFDColoring` object
8665531c7667SBarry Smith 
86669bdbcad8SBarry Smith   Level: advanced
86679bdbcad8SBarry Smith 
866873ff1848SBarry Smith   Developer Note:
866973ff1848SBarry Smith   This routine exists because the PETSc `Mat` library does not know about the `DM` objects
8670531c7667SBarry Smith 
86711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatFDColoring`, `MatFDColoringCreate()`, `ISColoringType`
8672531c7667SBarry Smith @*/
8673d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringUseDM(Mat coloring, MatFDColoring fdcoloring)
8674d71ae5a4SJacob Faibussowitsch {
8675531c7667SBarry Smith   PetscFunctionBegin;
8676531c7667SBarry Smith   coloring->ops->fdcoloringapply = MatFDColoringApply_AIJDM;
86773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8678531c7667SBarry Smith }
86798320bc6fSPatrick Sanan 
86808320bc6fSPatrick Sanan /*@
8681bb7acecfSBarry Smith   DMGetCompatibility - determine if two `DM`s are compatible
86828320bc6fSPatrick Sanan 
86838320bc6fSPatrick Sanan   Collective
86848320bc6fSPatrick Sanan 
86858320bc6fSPatrick Sanan   Input Parameters:
8686bb7acecfSBarry Smith + dm1 - the first `DM`
8687bb7acecfSBarry Smith - dm2 - the second `DM`
86888320bc6fSPatrick Sanan 
86898320bc6fSPatrick Sanan   Output Parameters:
8690bb7acecfSBarry Smith + compatible - whether or not the two `DM`s are compatible
8691bb7acecfSBarry Smith - set        - whether or not the compatible value was actually determined and set
86928320bc6fSPatrick Sanan 
869320f4b53cSBarry Smith   Level: advanced
869420f4b53cSBarry Smith 
86958320bc6fSPatrick Sanan   Notes:
8696bb7acecfSBarry Smith   Two `DM`s are deemed compatible if they represent the same parallel decomposition
86973d862458SPatrick Sanan   of the same topology. This implies that the section (field data) on one
86988320bc6fSPatrick Sanan   "makes sense" with respect to the topology and parallel decomposition of the other.
8699bb7acecfSBarry Smith   Loosely speaking, compatible `DM`s represent the same domain and parallel
87003d862458SPatrick Sanan   decomposition, but hold different data.
87018320bc6fSPatrick Sanan 
87028320bc6fSPatrick Sanan   Typically, one would confirm compatibility if intending to simultaneously iterate
8703bb7acecfSBarry Smith   over a pair of vectors obtained from different `DM`s.
87048320bc6fSPatrick Sanan 
8705bb7acecfSBarry Smith   For example, two `DMDA` objects are compatible if they have the same local
87068320bc6fSPatrick Sanan   and global sizes and the same stencil width. They can have different numbers
87078320bc6fSPatrick Sanan   of degrees of freedom per node. Thus, one could use the node numbering from
8708bb7acecfSBarry Smith   either `DM` in bounds for a loop over vectors derived from either `DM`.
87098320bc6fSPatrick Sanan 
8710bb7acecfSBarry Smith   Consider the operation of summing data living on a 2-dof `DMDA` to data living
8711bb7acecfSBarry Smith   on a 1-dof `DMDA`, which should be compatible, as in the following snippet.
87128320bc6fSPatrick Sanan .vb
87138320bc6fSPatrick Sanan   ...
87149566063dSJacob Faibussowitsch   PetscCall(DMGetCompatibility(da1,da2,&compatible,&set));
87158320bc6fSPatrick Sanan   if (set && compatible)  {
87169566063dSJacob Faibussowitsch     PetscCall(DMDAVecGetArrayDOF(da1,vec1,&arr1));
87179566063dSJacob Faibussowitsch     PetscCall(DMDAVecGetArrayDOF(da2,vec2,&arr2));
87189566063dSJacob Faibussowitsch     PetscCall(DMDAGetCorners(da1,&x,&y,NULL,&m,&n,NULL));
87198320bc6fSPatrick Sanan     for (j=y; j<y+n; ++j) {
87208320bc6fSPatrick Sanan       for (i=x; i<x+m, ++i) {
87218320bc6fSPatrick Sanan         arr1[j][i][0] = arr2[j][i][0] + arr2[j][i][1];
87228320bc6fSPatrick Sanan       }
87238320bc6fSPatrick Sanan     }
87249566063dSJacob Faibussowitsch     PetscCall(DMDAVecRestoreArrayDOF(da1,vec1,&arr1));
87259566063dSJacob Faibussowitsch     PetscCall(DMDAVecRestoreArrayDOF(da2,vec2,&arr2));
87268320bc6fSPatrick Sanan   } else {
87278320bc6fSPatrick Sanan     SETERRQ(PetscObjectComm((PetscObject)da1,PETSC_ERR_ARG_INCOMP,"DMDA objects incompatible");
87288320bc6fSPatrick Sanan   }
87298320bc6fSPatrick Sanan   ...
87308320bc6fSPatrick Sanan .ve
87318320bc6fSPatrick Sanan 
8732bb7acecfSBarry Smith   Checking compatibility might be expensive for a given implementation of `DM`,
87338320bc6fSPatrick Sanan   or might be impossible to unambiguously confirm or deny. For this reason,
87348320bc6fSPatrick Sanan   this function may decline to determine compatibility, and hence users should
87358320bc6fSPatrick Sanan   always check the "set" output parameter.
87368320bc6fSPatrick Sanan 
8737bb7acecfSBarry Smith   A `DM` is always compatible with itself.
87388320bc6fSPatrick Sanan 
8739bb7acecfSBarry Smith   In the current implementation, `DM`s which live on "unequal" communicators
87408320bc6fSPatrick Sanan   (MPI_UNEQUAL in the terminology of MPI_Comm_compare()) are always deemed
87418320bc6fSPatrick Sanan   incompatible.
87428320bc6fSPatrick Sanan 
87438320bc6fSPatrick Sanan   This function is labeled "Collective," as information about all subdomains
8744bb7acecfSBarry Smith   is required on each rank. However, in `DM` implementations which store all this
87458320bc6fSPatrick Sanan   information locally, this function may be merely "Logically Collective".
87468320bc6fSPatrick Sanan 
874773ff1848SBarry Smith   Developer Note:
8748bb7acecfSBarry Smith   Compatibility is assumed to be a symmetric concept; `DM` A is compatible with `DM` B
87493d862458SPatrick Sanan   iff B is compatible with A. Thus, this function checks the implementations
8750a5bc1bf3SBarry Smith   of both dm and dmc (if they are of different types), attempting to determine
8751bb7acecfSBarry Smith   compatibility. It is left to `DM` implementers to ensure that symmetry is
87528320bc6fSPatrick Sanan   preserved. The simplest way to do this is, when implementing type-specific
87533d862458SPatrick Sanan   logic for this function, is to check for existing logic in the implementation
8754bb7acecfSBarry Smith   of other `DM` types and let *set = PETSC_FALSE if found.
87558320bc6fSPatrick Sanan 
87561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreateCompatibleDMDA()`, `DMStagCreateCompatibleDMStag()`
87578320bc6fSPatrick Sanan @*/
8758d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCompatibility(DM dm1, DM dm2, PetscBool *compatible, PetscBool *set)
8759d71ae5a4SJacob Faibussowitsch {
87608320bc6fSPatrick Sanan   PetscMPIInt compareResult;
87618320bc6fSPatrick Sanan   DMType      type, type2;
87628320bc6fSPatrick Sanan   PetscBool   sameType;
87638320bc6fSPatrick Sanan 
87648320bc6fSPatrick Sanan   PetscFunctionBegin;
8765a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dm1, DM_CLASSID, 1);
87668320bc6fSPatrick Sanan   PetscValidHeaderSpecific(dm2, DM_CLASSID, 2);
87678320bc6fSPatrick Sanan 
87688320bc6fSPatrick Sanan   /* Declare a DM compatible with itself */
8769a5bc1bf3SBarry Smith   if (dm1 == dm2) {
87708320bc6fSPatrick Sanan     *set        = PETSC_TRUE;
87718320bc6fSPatrick Sanan     *compatible = PETSC_TRUE;
87723ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
87738320bc6fSPatrick Sanan   }
87748320bc6fSPatrick Sanan 
87758320bc6fSPatrick Sanan   /* Declare a DM incompatible with a DM that lives on an "unequal"
87768320bc6fSPatrick Sanan      communicator. Note that this does not preclude compatibility with
87778320bc6fSPatrick Sanan      DMs living on "congruent" or "similar" communicators, but this must be
87788320bc6fSPatrick Sanan      determined by the implementation-specific logic */
87799566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)dm1), PetscObjectComm((PetscObject)dm2), &compareResult));
87808320bc6fSPatrick Sanan   if (compareResult == MPI_UNEQUAL) {
87818320bc6fSPatrick Sanan     *set        = PETSC_TRUE;
87828320bc6fSPatrick Sanan     *compatible = PETSC_FALSE;
87833ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
87848320bc6fSPatrick Sanan   }
87858320bc6fSPatrick Sanan 
87868320bc6fSPatrick Sanan   /* Pass to the implementation-specific routine, if one exists. */
8787a5bc1bf3SBarry Smith   if (dm1->ops->getcompatibility) {
8788dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm1, getcompatibility, dm2, compatible, set);
87893ba16761SJacob Faibussowitsch     if (*set) PetscFunctionReturn(PETSC_SUCCESS);
87908320bc6fSPatrick Sanan   }
87918320bc6fSPatrick Sanan 
8792a5bc1bf3SBarry Smith   /* If dm1 and dm2 are of different types, then attempt to check compatibility
87938320bc6fSPatrick Sanan      with an implementation of this function from dm2 */
87949566063dSJacob Faibussowitsch   PetscCall(DMGetType(dm1, &type));
87959566063dSJacob Faibussowitsch   PetscCall(DMGetType(dm2, &type2));
87969566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(type, type2, &sameType));
87978320bc6fSPatrick Sanan   if (!sameType && dm2->ops->getcompatibility) {
8798dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm2, getcompatibility, dm1, compatible, set); /* Note argument order */
87998320bc6fSPatrick Sanan   } else {
88008320bc6fSPatrick Sanan     *set = PETSC_FALSE;
88018320bc6fSPatrick Sanan   }
88023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
88038320bc6fSPatrick Sanan }
8804c0f0dcc3SMatthew G. Knepley 
8805c0f0dcc3SMatthew G. Knepley /*@C
8806bb7acecfSBarry Smith   DMMonitorSet - Sets an additional monitor function that is to be used after a solve to monitor discretization performance.
8807c0f0dcc3SMatthew G. Knepley 
880820f4b53cSBarry Smith   Logically Collective
8809c0f0dcc3SMatthew G. Knepley 
8810c0f0dcc3SMatthew G. Knepley   Input Parameters:
881160225df5SJacob Faibussowitsch + dm             - the `DM`
8812c0f0dcc3SMatthew G. Knepley . f              - the monitor function
881320f4b53cSBarry Smith . mctx           - [optional] user-defined context for private data for the monitor routine (use `NULL` if no context is desired)
881420f4b53cSBarry Smith - monitordestroy - [optional] routine that frees monitor context (may be `NULL`)
8815c0f0dcc3SMatthew G. Knepley 
881620f4b53cSBarry Smith   Options Database Key:
881760225df5SJacob Faibussowitsch . -dm_monitor_cancel - cancels all monitors that have been hardwired into a code by calls to `DMMonitorSet()`, but
8818c0f0dcc3SMatthew G. Knepley                             does not cancel those set via the options database.
8819c0f0dcc3SMatthew G. Knepley 
88209bdbcad8SBarry Smith   Level: intermediate
88219bdbcad8SBarry Smith 
8822bb7acecfSBarry Smith   Note:
8823c0f0dcc3SMatthew G. Knepley   Several different monitoring routines may be set by calling
8824bb7acecfSBarry Smith   `DMMonitorSet()` multiple times or with `DMMonitorSetFromOptions()`; all will be called in the
8825c0f0dcc3SMatthew G. Knepley   order in which they were set.
8826c0f0dcc3SMatthew G. Knepley 
882773ff1848SBarry Smith   Fortran Note:
8828bb7acecfSBarry Smith   Only a single monitor function can be set for each `DM` object
8829bb7acecfSBarry Smith 
883073ff1848SBarry Smith   Developer Note:
8831bb7acecfSBarry Smith   This API has a generic name but seems specific to a very particular aspect of the use of `DM`
8832c0f0dcc3SMatthew G. Knepley 
88331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorCancel()`, `DMMonitorSetFromOptions()`, `DMMonitor()`
8834c0f0dcc3SMatthew G. Knepley @*/
8835d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSet(DM dm, PetscErrorCode (*f)(DM, void *), void *mctx, PetscErrorCode (*monitordestroy)(void **))
8836d71ae5a4SJacob Faibussowitsch {
8837c0f0dcc3SMatthew G. Knepley   PetscInt m;
8838c0f0dcc3SMatthew G. Knepley 
8839c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
8840c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8841c0f0dcc3SMatthew G. Knepley   for (m = 0; m < dm->numbermonitors; ++m) {
8842c0f0dcc3SMatthew G. Knepley     PetscBool identical;
8843c0f0dcc3SMatthew G. Knepley 
88449566063dSJacob Faibussowitsch     PetscCall(PetscMonitorCompare((PetscErrorCode(*)(void))f, mctx, monitordestroy, (PetscErrorCode(*)(void))dm->monitor[m], dm->monitorcontext[m], dm->monitordestroy[m], &identical));
88453ba16761SJacob Faibussowitsch     if (identical) PetscFunctionReturn(PETSC_SUCCESS);
8846c0f0dcc3SMatthew G. Knepley   }
88477a8be351SBarry Smith   PetscCheck(dm->numbermonitors < MAXDMMONITORS, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many monitors set");
8848c0f0dcc3SMatthew G. Knepley   dm->monitor[dm->numbermonitors]          = f;
8849c0f0dcc3SMatthew G. Knepley   dm->monitordestroy[dm->numbermonitors]   = monitordestroy;
8850c0f0dcc3SMatthew G. Knepley   dm->monitorcontext[dm->numbermonitors++] = (void *)mctx;
88513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8852c0f0dcc3SMatthew G. Knepley }
8853c0f0dcc3SMatthew G. Knepley 
8854c0f0dcc3SMatthew G. Knepley /*@
8855bb7acecfSBarry Smith   DMMonitorCancel - Clears all the monitor functions for a `DM` object.
8856c0f0dcc3SMatthew G. Knepley 
885720f4b53cSBarry Smith   Logically Collective
8858c0f0dcc3SMatthew G. Knepley 
8859c0f0dcc3SMatthew G. Knepley   Input Parameter:
8860c0f0dcc3SMatthew G. Knepley . dm - the DM
8861c0f0dcc3SMatthew G. Knepley 
8862c0f0dcc3SMatthew G. Knepley   Options Database Key:
8863c0f0dcc3SMatthew G. Knepley . -dm_monitor_cancel - cancels all monitors that have been hardwired
8864bb7acecfSBarry Smith   into a code by calls to `DMonitorSet()`, but does not cancel those
8865c0f0dcc3SMatthew G. Knepley   set via the options database
8866c0f0dcc3SMatthew G. Knepley 
88679bdbcad8SBarry Smith   Level: intermediate
88689bdbcad8SBarry Smith 
8869bb7acecfSBarry Smith   Note:
8870bb7acecfSBarry Smith   There is no way to clear one specific monitor from a `DM` object.
8871c0f0dcc3SMatthew G. Knepley 
88721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`, `DMMonitor()`
8873c0f0dcc3SMatthew G. Knepley @*/
8874d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorCancel(DM dm)
8875d71ae5a4SJacob Faibussowitsch {
8876c0f0dcc3SMatthew G. Knepley   PetscInt m;
8877c0f0dcc3SMatthew G. Knepley 
8878c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
8879c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8880c0f0dcc3SMatthew G. Knepley   for (m = 0; m < dm->numbermonitors; ++m) {
88819566063dSJacob Faibussowitsch     if (dm->monitordestroy[m]) PetscCall((*dm->monitordestroy[m])(&dm->monitorcontext[m]));
8882c0f0dcc3SMatthew G. Knepley   }
8883c0f0dcc3SMatthew G. Knepley   dm->numbermonitors = 0;
88843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8885c0f0dcc3SMatthew G. Knepley }
8886c0f0dcc3SMatthew G. Knepley 
8887c0f0dcc3SMatthew G. Knepley /*@C
8888c0f0dcc3SMatthew G. Knepley   DMMonitorSetFromOptions - Sets a monitor function and viewer appropriate for the type indicated by the user
8889c0f0dcc3SMatthew G. Knepley 
889020f4b53cSBarry Smith   Collective
8891c0f0dcc3SMatthew G. Knepley 
8892c0f0dcc3SMatthew G. Knepley   Input Parameters:
8893bb7acecfSBarry Smith + dm           - `DM` object you wish to monitor
8894c0f0dcc3SMatthew G. Knepley . name         - the monitor type one is seeking
8895c0f0dcc3SMatthew G. Knepley . help         - message indicating what monitoring is done
8896c0f0dcc3SMatthew G. Knepley . manual       - manual page for the monitor
8897c0f0dcc3SMatthew G. Knepley . monitor      - the monitor function
8898bb7acecfSBarry Smith - monitorsetup - a function that is called once ONLY if the user selected this monitor that may set additional features of the `DM` or `PetscViewer` objects
8899c0f0dcc3SMatthew G. Knepley 
8900c0f0dcc3SMatthew G. Knepley   Output Parameter:
8901c0f0dcc3SMatthew G. Knepley . flg - Flag set if the monitor was created
8902c0f0dcc3SMatthew G. Knepley 
8903c0f0dcc3SMatthew G. Knepley   Level: developer
8904c0f0dcc3SMatthew G. Knepley 
89051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscOptionsGetViewer()`, `PetscOptionsGetReal()`, `PetscOptionsHasName()`, `PetscOptionsGetString()`,
8906db781477SPatrick Sanan           `PetscOptionsGetIntArray()`, `PetscOptionsGetRealArray()`, `PetscOptionsBool()`
890760225df5SJacob Faibussowitsch           `PetscOptionsInt()`, `PetscOptionsString()`, `PetscOptionsReal()`,
8908db781477SPatrick Sanan           `PetscOptionsName()`, `PetscOptionsBegin()`, `PetscOptionsEnd()`, `PetscOptionsHeadBegin()`,
8909c2e3fba1SPatrick Sanan           `PetscOptionsStringArray()`, `PetscOptionsRealArray()`, `PetscOptionsScalar()`,
8910db781477SPatrick Sanan           `PetscOptionsBoolGroupBegin()`, `PetscOptionsBoolGroup()`, `PetscOptionsBoolGroupEnd()`,
8911bb7acecfSBarry Smith           `PetscOptionsFList()`, `PetscOptionsEList()`, `DMMonitor()`, `DMMonitorSet()`
8912c0f0dcc3SMatthew G. Knepley @*/
8913d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSetFromOptions(DM dm, const char name[], const char help[], const char manual[], PetscErrorCode (*monitor)(DM, void *), PetscErrorCode (*monitorsetup)(DM, PetscViewerAndFormat *), PetscBool *flg)
8914d71ae5a4SJacob Faibussowitsch {
8915c0f0dcc3SMatthew G. Knepley   PetscViewer       viewer;
8916c0f0dcc3SMatthew G. Knepley   PetscViewerFormat format;
8917c0f0dcc3SMatthew G. Knepley 
8918c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
8919c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
89209566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetViewer(PetscObjectComm((PetscObject)dm), ((PetscObject)dm)->options, ((PetscObject)dm)->prefix, name, &viewer, &format, flg));
8921c0f0dcc3SMatthew G. Knepley   if (*flg) {
8922c0f0dcc3SMatthew G. Knepley     PetscViewerAndFormat *vf;
8923c0f0dcc3SMatthew G. Knepley 
89249566063dSJacob Faibussowitsch     PetscCall(PetscViewerAndFormatCreate(viewer, format, &vf));
8925cd791dc2SBarry Smith     PetscCall(PetscOptionsRestoreViewer(&viewer));
89269566063dSJacob Faibussowitsch     if (monitorsetup) PetscCall((*monitorsetup)(dm, vf));
89279566063dSJacob Faibussowitsch     PetscCall(DMMonitorSet(dm, (PetscErrorCode(*)(DM, void *))monitor, vf, (PetscErrorCode(*)(void **))PetscViewerAndFormatDestroy));
8928c0f0dcc3SMatthew G. Knepley   }
89293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8930c0f0dcc3SMatthew G. Knepley }
8931c0f0dcc3SMatthew G. Knepley 
8932c0f0dcc3SMatthew G. Knepley /*@
8933c0f0dcc3SMatthew G. Knepley   DMMonitor - runs the user provided monitor routines, if they exist
8934c0f0dcc3SMatthew G. Knepley 
893520f4b53cSBarry Smith   Collective
8936c0f0dcc3SMatthew G. Knepley 
89372fe279fdSBarry Smith   Input Parameter:
8938bb7acecfSBarry Smith . dm - The `DM`
8939c0f0dcc3SMatthew G. Knepley 
8940c0f0dcc3SMatthew G. Knepley   Level: developer
8941c0f0dcc3SMatthew G. Knepley 
894273ff1848SBarry Smith   Developer Note:
8943a4e35b19SJacob Faibussowitsch   Note should indicate when during the life of the `DM` the monitor is run. It appears to be
8944a4e35b19SJacob Faibussowitsch   related to the discretization process seems rather specialized since some `DM` have no
8945a4e35b19SJacob Faibussowitsch   concept of discretization.
8946bb7acecfSBarry Smith 
89471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`
8948c0f0dcc3SMatthew G. Knepley @*/
8949d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitor(DM dm)
8950d71ae5a4SJacob Faibussowitsch {
8951c0f0dcc3SMatthew G. Knepley   PetscInt m;
8952c0f0dcc3SMatthew G. Knepley 
8953c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
89543ba16761SJacob Faibussowitsch   if (!dm) PetscFunctionReturn(PETSC_SUCCESS);
8955c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
895648a46eb9SPierre Jolivet   for (m = 0; m < dm->numbermonitors; ++m) PetscCall((*dm->monitor[m])(dm, dm->monitorcontext[m]));
89573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8958c0f0dcc3SMatthew G. Knepley }
89592e4af2aeSMatthew G. Knepley 
89602e4af2aeSMatthew G. Knepley /*@
8961bb7acecfSBarry Smith   DMComputeError - Computes the error assuming the user has provided the exact solution functions
89622e4af2aeSMatthew G. Knepley 
896320f4b53cSBarry Smith   Collective
89642e4af2aeSMatthew G. Knepley 
89652e4af2aeSMatthew G. Knepley   Input Parameters:
8966bb7acecfSBarry Smith + dm  - The `DM`
89676b867d5aSJose E. Roman - sol - The solution vector
89682e4af2aeSMatthew G. Knepley 
89696b867d5aSJose E. Roman   Input/Output Parameter:
897020f4b53cSBarry Smith . errors - An array of length Nf, the number of fields, or `NULL` for no output; on output
89716b867d5aSJose E. Roman            contains the error in each field
89726b867d5aSJose E. Roman 
89736b867d5aSJose E. Roman   Output Parameter:
897420f4b53cSBarry Smith . errorVec - A vector to hold the cellwise error (may be `NULL`)
897520f4b53cSBarry Smith 
897620f4b53cSBarry Smith   Level: developer
89772e4af2aeSMatthew G. Knepley 
8978bb7acecfSBarry Smith   Note:
8979bb7acecfSBarry Smith   The exact solutions come from the `PetscDS` object, and the time comes from `DMGetOutputSequenceNumber()`.
89802e4af2aeSMatthew G. Knepley 
89811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMGetRegionNumDS()`, `PetscDSGetExactSolution()`, `DMGetOutputSequenceNumber()`
89822e4af2aeSMatthew G. Knepley @*/
8983d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeError(DM dm, Vec sol, PetscReal errors[], Vec *errorVec)
8984d71ae5a4SJacob Faibussowitsch {
89852e4af2aeSMatthew G. Knepley   PetscErrorCode (**exactSol)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *);
89862e4af2aeSMatthew G. Knepley   void    **ctxs;
89872e4af2aeSMatthew G. Knepley   PetscReal time;
89882e4af2aeSMatthew G. Knepley   PetscInt  Nf, f, Nds, s;
89892e4af2aeSMatthew G. Knepley 
89902e4af2aeSMatthew G. Knepley   PetscFunctionBegin;
89919566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
89929566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(Nf, &exactSol, Nf, &ctxs));
89939566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
89942e4af2aeSMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
89952e4af2aeSMatthew G. Knepley     PetscDS         ds;
89962e4af2aeSMatthew G. Knepley     DMLabel         label;
89972e4af2aeSMatthew G. Knepley     IS              fieldIS;
89982e4af2aeSMatthew G. Knepley     const PetscInt *fields;
89992e4af2aeSMatthew G. Knepley     PetscInt        dsNf;
90002e4af2aeSMatthew G. Knepley 
900107218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL));
90029566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsNf));
90039566063dSJacob Faibussowitsch     if (fieldIS) PetscCall(ISGetIndices(fieldIS, &fields));
90042e4af2aeSMatthew G. Knepley     for (f = 0; f < dsNf; ++f) {
90052e4af2aeSMatthew G. Knepley       const PetscInt field = fields[f];
90069566063dSJacob Faibussowitsch       PetscCall(PetscDSGetExactSolution(ds, field, &exactSol[field], &ctxs[field]));
90072e4af2aeSMatthew G. Knepley     }
90089566063dSJacob Faibussowitsch     if (fieldIS) PetscCall(ISRestoreIndices(fieldIS, &fields));
90092e4af2aeSMatthew G. Knepley   }
9010ad540459SPierre Jolivet   for (f = 0; f < Nf; ++f) PetscCheck(exactSol[f], PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "DS must contain exact solution functions in order to calculate error, missing for field %" PetscInt_FMT, f);
90119566063dSJacob Faibussowitsch   PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time));
90129566063dSJacob Faibussowitsch   if (errors) PetscCall(DMComputeL2FieldDiff(dm, time, exactSol, ctxs, sol, errors));
90132e4af2aeSMatthew G. Knepley   if (errorVec) {
90142e4af2aeSMatthew G. Knepley     DM             edm;
90152e4af2aeSMatthew G. Knepley     DMPolytopeType ct;
90162e4af2aeSMatthew G. Knepley     PetscBool      simplex;
90172e4af2aeSMatthew G. Knepley     PetscInt       dim, cStart, Nf;
90182e4af2aeSMatthew G. Knepley 
90199566063dSJacob Faibussowitsch     PetscCall(DMClone(dm, &edm));
90209566063dSJacob Faibussowitsch     PetscCall(DMGetDimension(edm, &dim));
90219566063dSJacob Faibussowitsch     PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL));
90229566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCellType(dm, cStart, &ct));
90232e4af2aeSMatthew G. Knepley     simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE;
90249566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
90252e4af2aeSMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
90262e4af2aeSMatthew G. Knepley       PetscFE         fe, efe;
90272e4af2aeSMatthew G. Knepley       PetscQuadrature q;
90282e4af2aeSMatthew G. Knepley       const char     *name;
90292e4af2aeSMatthew G. Knepley 
90309566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe));
90319566063dSJacob Faibussowitsch       PetscCall(PetscFECreateLagrange(PETSC_COMM_SELF, dim, Nf, simplex, 0, PETSC_DETERMINE, &efe));
90329566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetName((PetscObject)fe, &name));
90339566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)efe, name));
90349566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &q));
90359566063dSJacob Faibussowitsch       PetscCall(PetscFESetQuadrature(efe, q));
90369566063dSJacob Faibussowitsch       PetscCall(DMSetField(edm, f, NULL, (PetscObject)efe));
90379566063dSJacob Faibussowitsch       PetscCall(PetscFEDestroy(&efe));
90382e4af2aeSMatthew G. Knepley     }
90399566063dSJacob Faibussowitsch     PetscCall(DMCreateDS(edm));
90402e4af2aeSMatthew G. Knepley 
90419566063dSJacob Faibussowitsch     PetscCall(DMCreateGlobalVector(edm, errorVec));
90429566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)*errorVec, "Error"));
90439566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeL2DiffVec(dm, time, exactSol, ctxs, sol, *errorVec));
90449566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&edm));
90452e4af2aeSMatthew G. Knepley   }
90469566063dSJacob Faibussowitsch   PetscCall(PetscFree2(exactSol, ctxs));
90473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
90482e4af2aeSMatthew G. Knepley }
90499a2a23afSMatthew G. Knepley 
90509a2a23afSMatthew G. Knepley /*@
9051bb7acecfSBarry Smith   DMGetNumAuxiliaryVec - Get the number of auxiliary vectors associated with this `DM`
90529a2a23afSMatthew G. Knepley 
905320f4b53cSBarry Smith   Not Collective
90549a2a23afSMatthew G. Knepley 
90559a2a23afSMatthew G. Knepley   Input Parameter:
9056bb7acecfSBarry Smith . dm - The `DM`
90579a2a23afSMatthew G. Knepley 
90589a2a23afSMatthew G. Knepley   Output Parameter:
9059a5b23f4aSJose E. Roman . numAux - The number of auxiliary data vectors
90609a2a23afSMatthew G. Knepley 
90619a2a23afSMatthew G. Knepley   Level: advanced
90629a2a23afSMatthew G. Knepley 
9063e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMGetAuxiliaryVec()`
90649a2a23afSMatthew G. Knepley @*/
9065d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumAuxiliaryVec(DM dm, PetscInt *numAux)
9066d71ae5a4SJacob Faibussowitsch {
90679a2a23afSMatthew G. Knepley   PetscFunctionBegin;
90689a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
90699566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxGetSize(dm->auxData, numAux));
90703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
90719a2a23afSMatthew G. Knepley }
90729a2a23afSMatthew G. Knepley 
90739a2a23afSMatthew G. Knepley /*@
9074ac17215fSMatthew G. Knepley   DMGetAuxiliaryVec - Get the auxiliary vector for region specified by the given label and value, and equation part
90759a2a23afSMatthew G. Knepley 
907620f4b53cSBarry Smith   Not Collective
90779a2a23afSMatthew G. Knepley 
90789a2a23afSMatthew G. Knepley   Input Parameters:
9079bb7acecfSBarry Smith + dm    - The `DM`
9080bb7acecfSBarry Smith . label - The `DMLabel`
9081ac17215fSMatthew G. Knepley . value - The label value indicating the region
9082ac17215fSMatthew G. Knepley - part  - The equation part, or 0 if unused
90839a2a23afSMatthew G. Knepley 
90849a2a23afSMatthew G. Knepley   Output Parameter:
9085bb7acecfSBarry Smith . aux - The `Vec` holding auxiliary field data
90869a2a23afSMatthew G. Knepley 
90879bdbcad8SBarry Smith   Level: advanced
90889bdbcad8SBarry Smith 
9089bb7acecfSBarry Smith   Note:
9090bb7acecfSBarry Smith   If no auxiliary vector is found for this (label, value), (NULL, 0, 0) is checked as well.
909104c51a94SMatthew G. Knepley 
9092e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryLabels()`
90939a2a23afSMatthew G. Knepley @*/
9094d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec *aux)
9095d71ae5a4SJacob Faibussowitsch {
9096ac17215fSMatthew G. Knepley   PetscHashAuxKey key, wild = {NULL, 0, 0};
909704c51a94SMatthew G. Knepley   PetscBool       has;
90989a2a23afSMatthew G. Knepley 
90999a2a23afSMatthew G. Knepley   PetscFunctionBegin;
91009a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
91019a2a23afSMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
91029a2a23afSMatthew G. Knepley   key.label = label;
91039a2a23afSMatthew G. Knepley   key.value = value;
9104ac17215fSMatthew G. Knepley   key.part  = part;
91059566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxHas(dm->auxData, key, &has));
91069566063dSJacob Faibussowitsch   if (has) PetscCall(PetscHMapAuxGet(dm->auxData, key, aux));
91079566063dSJacob Faibussowitsch   else PetscCall(PetscHMapAuxGet(dm->auxData, wild, aux));
91083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
91099a2a23afSMatthew G. Knepley }
91109a2a23afSMatthew G. Knepley 
91119a2a23afSMatthew G. Knepley /*@
9112bb7acecfSBarry Smith   DMSetAuxiliaryVec - Set an auxiliary vector for region specified by the given label and value, and equation part
91139a2a23afSMatthew G. Knepley 
911420f4b53cSBarry Smith   Not Collective because auxiliary vectors are not parallel
91159a2a23afSMatthew G. Knepley 
91169a2a23afSMatthew G. Knepley   Input Parameters:
9117bb7acecfSBarry Smith + dm    - The `DM`
9118bb7acecfSBarry Smith . label - The `DMLabel`
91199a2a23afSMatthew G. Knepley . value - The label value indicating the region
9120ac17215fSMatthew G. Knepley . part  - The equation part, or 0 if unused
9121bb7acecfSBarry Smith - aux   - The `Vec` holding auxiliary field data
91229a2a23afSMatthew G. Knepley 
91239a2a23afSMatthew G. Knepley   Level: advanced
91249a2a23afSMatthew G. Knepley 
9125e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMCopyAuxiliaryVec()`
91269a2a23afSMatthew G. Knepley @*/
9127d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec aux)
9128d71ae5a4SJacob Faibussowitsch {
91299a2a23afSMatthew G. Knepley   Vec             old;
91309a2a23afSMatthew G. Knepley   PetscHashAuxKey key;
91319a2a23afSMatthew G. Knepley 
91329a2a23afSMatthew G. Knepley   PetscFunctionBegin;
91339a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
91349a2a23afSMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
91359a2a23afSMatthew G. Knepley   key.label = label;
91369a2a23afSMatthew G. Knepley   key.value = value;
9137ac17215fSMatthew G. Knepley   key.part  = part;
91389566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxGet(dm->auxData, key, &old));
91399566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)aux));
91409566063dSJacob Faibussowitsch   if (!aux) PetscCall(PetscHMapAuxDel(dm->auxData, key));
91419566063dSJacob Faibussowitsch   else PetscCall(PetscHMapAuxSet(dm->auxData, key, aux));
9142d705d0eaSStefano Zampini   PetscCall(VecDestroy(&old));
91433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
91449a2a23afSMatthew G. Knepley }
91459a2a23afSMatthew G. Knepley 
91469a2a23afSMatthew G. Knepley /*@C
9147bb7acecfSBarry Smith   DMGetAuxiliaryLabels - Get the labels, values, and parts for all auxiliary vectors in this `DM`
91489a2a23afSMatthew G. Knepley 
914920f4b53cSBarry Smith   Not Collective
91509a2a23afSMatthew G. Knepley 
91519a2a23afSMatthew G. Knepley   Input Parameter:
9152bb7acecfSBarry Smith . dm - The `DM`
91539a2a23afSMatthew G. Knepley 
91549a2a23afSMatthew G. Knepley   Output Parameters:
9155bb7acecfSBarry Smith + labels - The `DMLabel`s for each `Vec`
9156bb7acecfSBarry Smith . values - The label values for each `Vec`
9157bb7acecfSBarry Smith - parts  - The equation parts for each `Vec`
91589a2a23afSMatthew G. Knepley 
91599bdbcad8SBarry Smith   Level: advanced
91609bdbcad8SBarry Smith 
9161bb7acecfSBarry Smith   Note:
9162bb7acecfSBarry Smith   The arrays passed in must be at least as large as `DMGetNumAuxiliaryVec()`.
91639a2a23afSMatthew G. Knepley 
9164e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMCopyAuxiliaryVec()`
91659a2a23afSMatthew G. Knepley @*/
9166d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryLabels(DM dm, DMLabel labels[], PetscInt values[], PetscInt parts[])
9167d71ae5a4SJacob Faibussowitsch {
91689a2a23afSMatthew G. Knepley   PetscHashAuxKey *keys;
91699a2a23afSMatthew G. Knepley   PetscInt         n, i, off = 0;
91709a2a23afSMatthew G. Knepley 
91719a2a23afSMatthew G. Knepley   PetscFunctionBegin;
91729a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
91734f572ea9SToby Isaac   PetscAssertPointer(labels, 2);
91744f572ea9SToby Isaac   PetscAssertPointer(values, 3);
91754f572ea9SToby Isaac   PetscAssertPointer(parts, 4);
91769566063dSJacob Faibussowitsch   PetscCall(DMGetNumAuxiliaryVec(dm, &n));
91779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &keys));
91789566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxGetKeys(dm->auxData, &off, keys));
91799371c9d4SSatish Balay   for (i = 0; i < n; ++i) {
91809371c9d4SSatish Balay     labels[i] = keys[i].label;
91819371c9d4SSatish Balay     values[i] = keys[i].value;
91829371c9d4SSatish Balay     parts[i]  = keys[i].part;
91839371c9d4SSatish Balay   }
91849566063dSJacob Faibussowitsch   PetscCall(PetscFree(keys));
91853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
91869a2a23afSMatthew G. Knepley }
91879a2a23afSMatthew G. Knepley 
91889a2a23afSMatthew G. Knepley /*@
9189bb7acecfSBarry Smith   DMCopyAuxiliaryVec - Copy the auxiliary vector data on a `DM` to a new `DM`
91909a2a23afSMatthew G. Knepley 
919120f4b53cSBarry Smith   Not Collective
91929a2a23afSMatthew G. Knepley 
91939a2a23afSMatthew G. Knepley   Input Parameter:
9194bb7acecfSBarry Smith . dm - The `DM`
91959a2a23afSMatthew G. Knepley 
91969a2a23afSMatthew G. Knepley   Output Parameter:
9197bb7acecfSBarry Smith . dmNew - The new `DM`, now with the same auxiliary data
91989a2a23afSMatthew G. Knepley 
91999a2a23afSMatthew G. Knepley   Level: advanced
92009a2a23afSMatthew G. Knepley 
9201bb7acecfSBarry Smith   Note:
9202bb7acecfSBarry Smith   This is a shallow copy of the auxiliary vectors
9203bb7acecfSBarry Smith 
9204e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`
92059a2a23afSMatthew G. Knepley @*/
9206d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyAuxiliaryVec(DM dm, DM dmNew)
9207d71ae5a4SJacob Faibussowitsch {
92089a2a23afSMatthew G. Knepley   PetscFunctionBegin;
92099a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9210d705d0eaSStefano Zampini   PetscValidHeaderSpecific(dmNew, DM_CLASSID, 2);
9211d705d0eaSStefano Zampini   if (dm == dmNew) PetscFunctionReturn(PETSC_SUCCESS);
9212e4d5475eSStefano Zampini   PetscCall(DMClearAuxiliaryVec(dmNew));
9213e4d5475eSStefano Zampini 
9214e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxDestroy(&dmNew->auxData));
92159566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxDuplicate(dm->auxData, &dmNew->auxData));
9216d705d0eaSStefano Zampini   {
9217d705d0eaSStefano Zampini     Vec     *auxData;
9218d705d0eaSStefano Zampini     PetscInt n, i, off = 0;
9219d705d0eaSStefano Zampini 
9220d705d0eaSStefano Zampini     PetscCall(PetscHMapAuxGetSize(dmNew->auxData, &n));
9221d705d0eaSStefano Zampini     PetscCall(PetscMalloc1(n, &auxData));
9222d705d0eaSStefano Zampini     PetscCall(PetscHMapAuxGetVals(dmNew->auxData, &off, auxData));
9223d705d0eaSStefano Zampini     for (i = 0; i < n; ++i) PetscCall(PetscObjectReference((PetscObject)auxData[i]));
9224d705d0eaSStefano Zampini     PetscCall(PetscFree(auxData));
9225e4d5475eSStefano Zampini   }
9226e4d5475eSStefano Zampini   PetscFunctionReturn(PETSC_SUCCESS);
9227e4d5475eSStefano Zampini }
9228e4d5475eSStefano Zampini 
9229e4d5475eSStefano Zampini /*@
9230e4d5475eSStefano Zampini   DMClearAuxiliaryVec - Destroys the auxiliary vector information and creates a new empty one
9231e4d5475eSStefano Zampini 
9232e4d5475eSStefano Zampini   Not Collective
9233e4d5475eSStefano Zampini 
9234e4d5475eSStefano Zampini   Input Parameter:
9235e4d5475eSStefano Zampini . dm - The `DM`
9236e4d5475eSStefano Zampini 
9237e4d5475eSStefano Zampini   Level: advanced
9238e4d5475eSStefano Zampini 
9239e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMCopyAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`
9240e4d5475eSStefano Zampini @*/
9241e4d5475eSStefano Zampini PetscErrorCode DMClearAuxiliaryVec(DM dm)
9242e4d5475eSStefano Zampini {
9243e4d5475eSStefano Zampini   Vec     *auxData;
9244e4d5475eSStefano Zampini   PetscInt n, i, off = 0;
9245e4d5475eSStefano Zampini 
9246e4d5475eSStefano Zampini   PetscFunctionBegin;
9247e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxGetSize(dm->auxData, &n));
9248d705d0eaSStefano Zampini   PetscCall(PetscMalloc1(n, &auxData));
9249e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxGetVals(dm->auxData, &off, auxData));
9250d705d0eaSStefano Zampini   for (i = 0; i < n; ++i) PetscCall(VecDestroy(&auxData[i]));
9251d705d0eaSStefano Zampini   PetscCall(PetscFree(auxData));
9252e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxDestroy(&dm->auxData));
9253e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxCreate(&dm->auxData));
92543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
92559a2a23afSMatthew G. Knepley }
9256b5a892a1SMatthew G. Knepley 
9257b5a892a1SMatthew G. Knepley /*@C
9258bb7acecfSBarry Smith   DMPolytopeMatchOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement
9259b5a892a1SMatthew G. Knepley 
926020f4b53cSBarry Smith   Not Collective
9261b5a892a1SMatthew G. Knepley 
9262b5a892a1SMatthew G. Knepley   Input Parameters:
9263bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9264b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces
9265b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces
9266b5a892a1SMatthew G. Knepley 
9267b5a892a1SMatthew G. Knepley   Output Parameters:
9268bb7acecfSBarry Smith + ornt  - The orientation (transformation) which will take the source arrangement to the target arrangement
9269b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found
9270b5a892a1SMatthew G. Knepley 
9271b5a892a1SMatthew G. Knepley   Level: advanced
9272b5a892a1SMatthew G. Knepley 
9273bb7acecfSBarry Smith   Note:
9274bb7acecfSBarry Smith   An arrangement is a face order combined with an orientation for each face
9275bb7acecfSBarry Smith 
927685036b15SMatthew G. Knepley   Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2
9277bb7acecfSBarry Smith   that labels each arrangement (face ordering plus orientation for each face).
9278bb7acecfSBarry Smith 
9279bb7acecfSBarry Smith   See `DMPolytopeMatchVertexOrientation()` to find a new vertex orientation that takes the source vertex arrangement to the target vertex arrangement
9280bb7acecfSBarry Smith 
92811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetVertexOrientation()`
9282b5a892a1SMatthew G. Knepley @*/
9283d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt, PetscBool *found)
9284d71ae5a4SJacob Faibussowitsch {
9285b5a892a1SMatthew G. Knepley   const PetscInt cS = DMPolytopeTypeGetConeSize(ct);
928685036b15SMatthew G. Knepley   const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2;
9287b5a892a1SMatthew G. Knepley   PetscInt       o, c;
9288b5a892a1SMatthew G. Knepley 
9289b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
92909371c9d4SSatish Balay   if (!nO) {
92919371c9d4SSatish Balay     *ornt  = 0;
92929371c9d4SSatish Balay     *found = PETSC_TRUE;
92933ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
92949371c9d4SSatish Balay   }
9295b5a892a1SMatthew G. Knepley   for (o = -nO; o < nO; ++o) {
929685036b15SMatthew G. Knepley     const PetscInt *arr = DMPolytopeTypeGetArrangement(ct, o);
9297b5a892a1SMatthew G. Knepley 
92989371c9d4SSatish Balay     for (c = 0; c < cS; ++c)
92999371c9d4SSatish Balay       if (sourceCone[arr[c * 2]] != targetCone[c]) break;
93009371c9d4SSatish Balay     if (c == cS) {
93019371c9d4SSatish Balay       *ornt = o;
93029371c9d4SSatish Balay       break;
93039371c9d4SSatish Balay     }
9304b5a892a1SMatthew G. Knepley   }
9305b5a892a1SMatthew G. Knepley   *found = o == nO ? PETSC_FALSE : PETSC_TRUE;
93063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9307b5a892a1SMatthew G. Knepley }
9308b5a892a1SMatthew G. Knepley 
9309b5a892a1SMatthew G. Knepley /*@C
9310bb7acecfSBarry Smith   DMPolytopeGetOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement
9311b5a892a1SMatthew G. Knepley 
931220f4b53cSBarry Smith   Not Collective
9313b5a892a1SMatthew G. Knepley 
9314b5a892a1SMatthew G. Knepley   Input Parameters:
9315bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9316b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces
9317b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces
9318b5a892a1SMatthew G. Knepley 
93192fe279fdSBarry Smith   Output Parameter:
9320bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement
9321b5a892a1SMatthew G. Knepley 
9322b5a892a1SMatthew G. Knepley   Level: advanced
9323b5a892a1SMatthew G. Knepley 
9324bb7acecfSBarry Smith   Note:
9325bb7acecfSBarry Smith   This function is the same as `DMPolytopeMatchOrientation()` except it will generate an error if no suitable orientation can be found.
9326bb7acecfSBarry Smith 
932773ff1848SBarry Smith   Developer Note:
9328bb7acecfSBarry Smith   It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchOrientation()` and error if none is found
9329bb7acecfSBarry Smith 
93301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchOrientation()`, `DMPolytopeGetVertexOrientation()`, `DMPolytopeMatchVertexOrientation()`
9331b5a892a1SMatthew G. Knepley @*/
9332d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt)
9333d71ae5a4SJacob Faibussowitsch {
9334b5a892a1SMatthew G. Knepley   PetscBool found;
9335b5a892a1SMatthew G. Knepley 
9336b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
93379566063dSJacob Faibussowitsch   PetscCall(DMPolytopeMatchOrientation(ct, sourceCone, targetCone, ornt, &found));
93387a8be351SBarry Smith   PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]);
93393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9340b5a892a1SMatthew G. Knepley }
9341b5a892a1SMatthew G. Knepley 
9342b5a892a1SMatthew G. Knepley /*@C
9343bb7acecfSBarry Smith   DMPolytopeMatchVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement
9344b5a892a1SMatthew G. Knepley 
934520f4b53cSBarry Smith   Not Collective
9346b5a892a1SMatthew G. Knepley 
9347b5a892a1SMatthew G. Knepley   Input Parameters:
9348bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9349b5a892a1SMatthew G. Knepley . sourceVert - The source arrangement of vertices
9350b5a892a1SMatthew G. Knepley - targetVert - The target arrangement of vertices
9351b5a892a1SMatthew G. Knepley 
9352b5a892a1SMatthew G. Knepley   Output Parameters:
9353bb7acecfSBarry Smith + ornt  - The orientation (transformation) which will take the source arrangement to the target arrangement
9354b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found
9355b5a892a1SMatthew G. Knepley 
9356b5a892a1SMatthew G. Knepley   Level: advanced
9357b5a892a1SMatthew G. Knepley 
935873ff1848SBarry Smith   Notes:
9359bb7acecfSBarry Smith   An arrangement is a vertex order
9360bb7acecfSBarry Smith 
936185036b15SMatthew G. Knepley   Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2
9362bb7acecfSBarry Smith   that labels each arrangement (vertex ordering).
9363bb7acecfSBarry Smith 
9364bb7acecfSBarry Smith   See `DMPolytopeMatchOrientation()` to find a new face orientation that takes the source face arrangement to the target face arrangement
9365bb7acecfSBarry Smith 
936685036b15SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchOrientation()`, `DMPolytopeTypeGetNumVertices()`, `DMPolytopeTypeGetVertexArrangement()`
9367b5a892a1SMatthew G. Knepley @*/
9368d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchVertexOrientation(DMPolytopeType ct, const PetscInt sourceVert[], const PetscInt targetVert[], PetscInt *ornt, PetscBool *found)
9369d71ae5a4SJacob Faibussowitsch {
9370b5a892a1SMatthew G. Knepley   const PetscInt cS = DMPolytopeTypeGetNumVertices(ct);
937185036b15SMatthew G. Knepley   const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2;
9372b5a892a1SMatthew G. Knepley   PetscInt       o, c;
9373b5a892a1SMatthew G. Knepley 
9374b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
93759371c9d4SSatish Balay   if (!nO) {
93769371c9d4SSatish Balay     *ornt  = 0;
93779371c9d4SSatish Balay     *found = PETSC_TRUE;
93783ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
93799371c9d4SSatish Balay   }
9380b5a892a1SMatthew G. Knepley   for (o = -nO; o < nO; ++o) {
938185036b15SMatthew G. Knepley     const PetscInt *arr = DMPolytopeTypeGetVertexArrangement(ct, o);
9382b5a892a1SMatthew G. Knepley 
93839371c9d4SSatish Balay     for (c = 0; c < cS; ++c)
93849371c9d4SSatish Balay       if (sourceVert[arr[c]] != targetVert[c]) break;
93859371c9d4SSatish Balay     if (c == cS) {
93869371c9d4SSatish Balay       *ornt = o;
93879371c9d4SSatish Balay       break;
93889371c9d4SSatish Balay     }
9389b5a892a1SMatthew G. Knepley   }
9390b5a892a1SMatthew G. Knepley   *found = o == nO ? PETSC_FALSE : PETSC_TRUE;
93913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9392b5a892a1SMatthew G. Knepley }
9393b5a892a1SMatthew G. Knepley 
9394b5a892a1SMatthew G. Knepley /*@C
9395bb7acecfSBarry Smith   DMPolytopeGetVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement
9396b5a892a1SMatthew G. Knepley 
939720f4b53cSBarry Smith   Not Collective
9398b5a892a1SMatthew G. Knepley 
9399b5a892a1SMatthew G. Knepley   Input Parameters:
9400bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9401b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of vertices
9402b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of vertices
9403b5a892a1SMatthew G. Knepley 
94042fe279fdSBarry Smith   Output Parameter:
9405bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement
9406b5a892a1SMatthew G. Knepley 
9407b5a892a1SMatthew G. Knepley   Level: advanced
9408b5a892a1SMatthew G. Knepley 
9409bb7acecfSBarry Smith   Note:
9410bb7acecfSBarry Smith   This function is the same as `DMPolytopeMatchVertexOrientation()` except it errors if not orientation is possible.
9411bb7acecfSBarry Smith 
941273ff1848SBarry Smith   Developer Note:
9413bb7acecfSBarry Smith   It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchVertexOrientation()` and error if none is found
9414bb7acecfSBarry Smith 
94151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetOrientation()`
9416b5a892a1SMatthew G. Knepley @*/
9417d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetVertexOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt)
9418d71ae5a4SJacob Faibussowitsch {
9419b5a892a1SMatthew G. Knepley   PetscBool found;
9420b5a892a1SMatthew G. Knepley 
9421b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
94229566063dSJacob Faibussowitsch   PetscCall(DMPolytopeMatchVertexOrientation(ct, sourceCone, targetCone, ornt, &found));
94237a8be351SBarry Smith   PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]);
94243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9425b5a892a1SMatthew G. Knepley }
9426012bc364SMatthew G. Knepley 
9427012bc364SMatthew G. Knepley /*@C
9428012bc364SMatthew G. Knepley   DMPolytopeInCellTest - Check whether a point lies inside the reference cell of given type
9429012bc364SMatthew G. Knepley 
943020f4b53cSBarry Smith   Not Collective
9431012bc364SMatthew G. Knepley 
9432012bc364SMatthew G. Knepley   Input Parameters:
9433bb7acecfSBarry Smith + ct    - The `DMPolytopeType`
9434012bc364SMatthew G. Knepley - point - Coordinates of the point
9435012bc364SMatthew G. Knepley 
94362fe279fdSBarry Smith   Output Parameter:
9437012bc364SMatthew G. Knepley . inside - Flag indicating whether the point is inside the reference cell of given type
9438012bc364SMatthew G. Knepley 
9439012bc364SMatthew G. Knepley   Level: advanced
9440012bc364SMatthew G. Knepley 
94411cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMLocatePoints()`
9442012bc364SMatthew G. Knepley @*/
9443d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeInCellTest(DMPolytopeType ct, const PetscReal point[], PetscBool *inside)
9444d71ae5a4SJacob Faibussowitsch {
9445012bc364SMatthew G. Knepley   PetscReal sum = 0.0;
9446012bc364SMatthew G. Knepley   PetscInt  d;
9447012bc364SMatthew G. Knepley 
9448012bc364SMatthew G. Knepley   PetscFunctionBegin;
9449012bc364SMatthew G. Knepley   *inside = PETSC_TRUE;
9450012bc364SMatthew G. Knepley   switch (ct) {
9451012bc364SMatthew G. Knepley   case DM_POLYTOPE_TRIANGLE:
9452012bc364SMatthew G. Knepley   case DM_POLYTOPE_TETRAHEDRON:
9453012bc364SMatthew G. Knepley     for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) {
94549371c9d4SSatish Balay       if (point[d] < -1.0) {
94559371c9d4SSatish Balay         *inside = PETSC_FALSE;
94569371c9d4SSatish Balay         break;
94579371c9d4SSatish Balay       }
9458012bc364SMatthew G. Knepley       sum += point[d];
9459012bc364SMatthew G. Knepley     }
94609371c9d4SSatish Balay     if (sum > PETSC_SMALL) {
94619371c9d4SSatish Balay       *inside = PETSC_FALSE;
94629371c9d4SSatish Balay       break;
94639371c9d4SSatish Balay     }
9464012bc364SMatthew G. Knepley     break;
9465012bc364SMatthew G. Knepley   case DM_POLYTOPE_QUADRILATERAL:
9466012bc364SMatthew G. Knepley   case DM_POLYTOPE_HEXAHEDRON:
9467012bc364SMatthew G. Knepley     for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d)
94689371c9d4SSatish Balay       if (PetscAbsReal(point[d]) > 1. + PETSC_SMALL) {
94699371c9d4SSatish Balay         *inside = PETSC_FALSE;
9470012bc364SMatthew G. Knepley         break;
94719371c9d4SSatish Balay       }
94729371c9d4SSatish Balay     break;
9473d71ae5a4SJacob Faibussowitsch   default:
9474d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported polytope type %s", DMPolytopeTypes[ct]);
9475012bc364SMatthew G. Knepley   }
94763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9477012bc364SMatthew G. Knepley }
9478adc21957SMatthew G. Knepley 
9479adc21957SMatthew G. Knepley /*@
9480adc21957SMatthew G. Knepley   DMReorderSectionSetDefault - Set flag indicating whether the local section should be reordered by default
9481adc21957SMatthew G. Knepley 
9482adc21957SMatthew G. Knepley   Logically collective
9483adc21957SMatthew G. Knepley 
9484adc21957SMatthew G. Knepley   Input Parameters:
9485adc21957SMatthew G. Knepley + dm      - The DM
9486adc21957SMatthew G. Knepley - reorder - Flag for reordering
9487adc21957SMatthew G. Knepley 
9488adc21957SMatthew G. Knepley   Level: intermediate
9489adc21957SMatthew G. Knepley 
9490adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetDefault()`
9491adc21957SMatthew G. Knepley @*/
9492adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetDefault(DM dm, DMReorderDefaultFlag reorder)
9493adc21957SMatthew G. Knepley {
9494adc21957SMatthew G. Knepley   PetscFunctionBegin;
9495adc21957SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9496adc21957SMatthew G. Knepley   PetscTryMethod(dm, "DMReorderSectionSetDefault_C", (DM, DMReorderDefaultFlag), (dm, reorder));
9497adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
9498adc21957SMatthew G. Knepley }
9499adc21957SMatthew G. Knepley 
9500adc21957SMatthew G. Knepley /*@
9501adc21957SMatthew G. Knepley   DMReorderSectionGetDefault - Get flag indicating whether the local section should be reordered by default
9502adc21957SMatthew G. Knepley 
9503adc21957SMatthew G. Knepley   Not collective
9504adc21957SMatthew G. Knepley 
9505adc21957SMatthew G. Knepley   Input Parameter:
9506adc21957SMatthew G. Knepley . dm - The DM
9507adc21957SMatthew G. Knepley 
9508adc21957SMatthew G. Knepley   Output Parameter:
9509adc21957SMatthew G. Knepley . reorder - Flag for reordering
9510adc21957SMatthew G. Knepley 
9511adc21957SMatthew G. Knepley   Level: intermediate
9512adc21957SMatthew G. Knepley 
9513adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()`
9514adc21957SMatthew G. Knepley @*/
9515adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetDefault(DM dm, DMReorderDefaultFlag *reorder)
9516adc21957SMatthew G. Knepley {
9517adc21957SMatthew G. Knepley   PetscFunctionBegin;
9518adc21957SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9519adc21957SMatthew G. Knepley   PetscAssertPointer(reorder, 2);
9520adc21957SMatthew G. Knepley   *reorder = DM_REORDER_DEFAULT_NOTSET;
9521adc21957SMatthew G. Knepley   PetscTryMethod(dm, "DMReorderSectionGetDefault_C", (DM, DMReorderDefaultFlag *), (dm, reorder));
9522adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
9523adc21957SMatthew G. Knepley }
9524adc21957SMatthew G. Knepley 
9525adc21957SMatthew G. Knepley /*@C
9526adc21957SMatthew G. Knepley   DMReorderSectionSetType - Set the type of local section reordering
9527adc21957SMatthew G. Knepley 
9528adc21957SMatthew G. Knepley   Logically collective
9529adc21957SMatthew G. Knepley 
9530adc21957SMatthew G. Knepley   Input Parameters:
9531adc21957SMatthew G. Knepley + dm      - The DM
9532adc21957SMatthew G. Knepley - reorder - The reordering method
9533adc21957SMatthew G. Knepley 
9534adc21957SMatthew G. Knepley   Level: intermediate
9535adc21957SMatthew G. Knepley 
9536adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetType()`, `DMReorderSectionSetDefault()`
9537adc21957SMatthew G. Knepley @*/
9538adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetType(DM dm, MatOrderingType reorder)
9539adc21957SMatthew G. Knepley {
9540adc21957SMatthew G. Knepley   PetscFunctionBegin;
9541adc21957SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9542adc21957SMatthew G. Knepley   PetscTryMethod(dm, "DMReorderSectionSetType_C", (DM, MatOrderingType), (dm, reorder));
9543adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
9544adc21957SMatthew G. Knepley }
9545adc21957SMatthew G. Knepley 
9546adc21957SMatthew G. Knepley /*@C
9547adc21957SMatthew G. Knepley   DMReorderSectionGetType - Get the reordering type for the local section
9548adc21957SMatthew G. Knepley 
9549adc21957SMatthew G. Knepley   Not collective
9550adc21957SMatthew G. Knepley 
9551adc21957SMatthew G. Knepley   Input Parameter:
9552adc21957SMatthew G. Knepley . dm - The DM
9553adc21957SMatthew G. Knepley 
9554adc21957SMatthew G. Knepley   Output Parameter:
9555adc21957SMatthew G. Knepley . reorder - The reordering method
9556adc21957SMatthew G. Knepley 
9557adc21957SMatthew G. Knepley   Level: intermediate
9558adc21957SMatthew G. Knepley 
9559adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()`, `DMReorderSectionGetDefault()`
9560adc21957SMatthew G. Knepley @*/
9561adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetType(DM dm, MatOrderingType *reorder)
9562adc21957SMatthew G. Knepley {
9563adc21957SMatthew G. Knepley   PetscFunctionBegin;
9564adc21957SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9565adc21957SMatthew G. Knepley   PetscAssertPointer(reorder, 2);
9566adc21957SMatthew G. Knepley   *reorder = NULL;
9567adc21957SMatthew G. Knepley   PetscTryMethod(dm, "DMReorderSectionGetType_C", (DM, MatOrderingType *), (dm, reorder));
9568adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
9569adc21957SMatthew G. Knepley }
9570