xref: /petsc/src/dm/interface/dm.c (revision dd4c3f67496275a10180fa3e9c7ac555daec1908)
1d0295fc0SJunchao Zhang #include <petscvec.h>
2af0996ceSBarry Smith #include <petsc/private/dmimpl.h>      /*I      "petscdm.h"          I*/
3c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I      "petscdmlabel.h"     I*/
4e6f8dbb6SToby Isaac #include <petsc/private/petscdsimpl.h> /*I      "petscds.h"     I*/
53e922f36SToby Isaac #include <petscdmplex.h>
6f19dbd58SToby Isaac #include <petscdmfield.h>
70c312b8eSJed Brown #include <petscsf.h>
82764a2aaSMatthew G. Knepley #include <petscds.h>
947c6ae99SBarry Smith 
10f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED
11f918ec44SMatthew G. Knepley   #include <petscfeceed.h>
12f918ec44SMatthew G. Knepley #endif
13f918ec44SMatthew G. Knepley 
14cea3dcb8SSatish Balay #if !defined(PETSC_HAVE_WINDOWS_COMPILERS)
15cea3dcb8SSatish Balay   #include <petsc/private/valgrind/memcheck.h>
1600d952a4SJed Brown #endif
1700d952a4SJed Brown 
18732e2eb9SMatthew G Knepley PetscClassId DM_CLASSID;
19d67d17b1SMatthew G. Knepley PetscClassId DMLABEL_CLASSID;
205b8ffe73SMark Adams PetscLogEvent DM_Convert, DM_GlobalToLocal, DM_LocalToGlobal, DM_LocalToLocal, DM_LocatePoints, DM_Coarsen, DM_Refine, DM_CreateInterpolation, DM_CreateRestriction, DM_CreateInjection, DM_CreateMatrix, DM_CreateMassMatrix, DM_Load, DM_AdaptInterpolator;
2167a56275SMatthew G Knepley 
22ea78f98cSLisandro Dalcin const char *const DMBoundaryTypes[]          = {"NONE", "GHOSTED", "MIRROR", "PERIODIC", "TWIST", "DMBoundaryType", "DM_BOUNDARY_", NULL};
23d1b3049bSMatthew G. Knepley const char *const DMBoundaryConditionTypes[] = {"INVALID", "ESSENTIAL", "NATURAL", "INVALID", "INVALID", "ESSENTIAL_FIELD", "NATURAL_FIELD", "INVALID", "INVALID", "ESSENTIAL_BD_FIELD", "NATURAL_RIEMANN", "DMBoundaryConditionType", "DM_BC_", NULL};
249371c9d4SSatish Balay const char *const DMPolytopeTypes[]   = {"vertex",  "segment",       "tensor_segment",      "triangle", "quadrilateral", "tensor_quad",    "tetrahedron",  "hexahedron", "triangular_prism", "tensor_triangular_prism", "tensor_quadrilateral_prism",
259371c9d4SSatish Balay                                          "pyramid", "FV_ghost_cell", "interior_ghost_cell", "unknown",  "invalid",       "DMPolytopeType", "DM_POLYTOPE_", NULL};
262cbb9b06SVaclav Hapla const char *const DMCopyLabelsModes[] = {"replace", "keep", "fail", "DMCopyLabelsMode", "DM_COPY_LABELS_", NULL};
2760c22052SBarry Smith 
28a4121054SBarry Smith /*@
29bb7acecfSBarry Smith   DMCreate - Creates an empty `DM` object. `DM`s are the abstract objects in PETSc that mediate between meshes and discretizations and the
30bb7acecfSBarry Smith   algebraic solvers, time integrators, and optimization algorithms.
31a4121054SBarry Smith 
32d083f849SBarry Smith   Collective
33a4121054SBarry Smith 
34a4121054SBarry Smith   Input Parameter:
35bb7acecfSBarry Smith . comm - The communicator for the `DM` object
36a4121054SBarry Smith 
37a4121054SBarry Smith   Output Parameter:
38bb7acecfSBarry Smith . dm - The `DM` object
39a4121054SBarry Smith 
40a4121054SBarry Smith   Level: beginner
41a4121054SBarry Smith 
42bb7acecfSBarry Smith   Notes:
43bb7acecfSBarry Smith   See `DMType` for a brief summary of available `DM`.
44bb7acecfSBarry Smith 
45bb7acecfSBarry Smith   The type must then be set with `DMSetType()`. If you never call `DMSetType()` it will generate an
46bb7acecfSBarry Smith   error when you try to use the dm.
47bb7acecfSBarry Smith 
48bb7acecfSBarry Smith .seealso: `DMSetType()`, `DMType`, `DMDACreate()`, `DMDA`, `DMSLICED`, `DMCOMPOSITE`, `DMPLEX`, `DMMOAB`, `DMNETWORK`
49a4121054SBarry Smith @*/
50d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreate(MPI_Comm comm, DM *dm)
51d71ae5a4SJacob Faibussowitsch {
52a4121054SBarry Smith   DM      v;
53e5e52638SMatthew G. Knepley   PetscDS ds;
54a4121054SBarry Smith 
55a4121054SBarry Smith   PetscFunctionBegin;
561411c6eeSJed Brown   PetscValidPointer(dm, 2);
570298fd71SBarry Smith   *dm = NULL;
589566063dSJacob Faibussowitsch   PetscCall(DMInitializePackage());
59a4121054SBarry Smith 
609566063dSJacob Faibussowitsch   PetscCall(PetscHeaderCreate(v, DM_CLASSID, "DM", "Distribution Manager", "DM", comm, DMDestroy, DMView));
61e7c4fc90SDmitry Karpeev 
6262e5d2d2SJDBetteridge   ((PetscObject)v)->non_cyclic_references = &DMCountNonCyclicReferences;
6362e5d2d2SJDBetteridge 
6449be4549SMatthew G. Knepley   v->setupcalled          = PETSC_FALSE;
6549be4549SMatthew G. Knepley   v->setfromoptionscalled = PETSC_FALSE;
660298fd71SBarry Smith   v->ltogmap              = NULL;
67a4ea9b21SRichard Tran Mills   v->bind_below           = 0;
681411c6eeSJed Brown   v->bs                   = 1;
69171400e9SBarry Smith   v->coloringtype         = IS_COLORING_GLOBAL;
709566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &v->sf));
719566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &v->sectionSF));
72c58f1c22SToby Isaac   v->labels                    = NULL;
7334aa8a36SMatthew G. Knepley   v->adjacency[0]              = PETSC_FALSE;
7434aa8a36SMatthew G. Knepley   v->adjacency[1]              = PETSC_TRUE;
75c58f1c22SToby Isaac   v->depthLabel                = NULL;
76ba2698f1SMatthew G. Knepley   v->celltypeLabel             = NULL;
771bb6d2a8SBarry Smith   v->localSection              = NULL;
781bb6d2a8SBarry Smith   v->globalSection             = NULL;
793b8ba7d1SJed Brown   v->defaultConstraint.section = NULL;
803b8ba7d1SJed Brown   v->defaultConstraint.mat     = NULL;
8179769bd5SJed Brown   v->defaultConstraint.bias    = NULL;
826858538eSMatthew G. Knepley   v->coordinates[0].dim        = PETSC_DEFAULT;
836858538eSMatthew G. Knepley   v->coordinates[1].dim        = PETSC_DEFAULT;
846858538eSMatthew G. Knepley   v->sparseLocalize            = PETSC_TRUE;
8596173672SStefano Zampini   v->dim                       = PETSC_DETERMINE;
86435a35e8SMatthew G Knepley   {
87435a35e8SMatthew G Knepley     PetscInt i;
88435a35e8SMatthew G Knepley     for (i = 0; i < 10; ++i) {
890298fd71SBarry Smith       v->nullspaceConstructors[i]     = NULL;
90f9d4088aSMatthew G. Knepley       v->nearnullspaceConstructors[i] = NULL;
91435a35e8SMatthew G Knepley     }
92435a35e8SMatthew G Knepley   }
939566063dSJacob Faibussowitsch   PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds));
949566063dSJacob Faibussowitsch   PetscCall(DMSetRegionDS(v, NULL, NULL, ds));
959566063dSJacob Faibussowitsch   PetscCall(PetscDSDestroy(&ds));
969566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxCreate(&v->auxData));
9714f150ffSMatthew G. Knepley   v->dmBC              = NULL;
98a8fb8f29SToby Isaac   v->coarseMesh        = NULL;
99f4d763aaSMatthew G. Knepley   v->outputSequenceNum = -1;
100cdb7a50dSMatthew G. Knepley   v->outputSequenceVal = 0.0;
1019566063dSJacob Faibussowitsch   PetscCall(DMSetVecType(v, VECSTANDARD));
1029566063dSJacob Faibussowitsch   PetscCall(DMSetMatType(v, MATAIJ));
1034a7a4c06SLawrence Mitchell 
1041411c6eeSJed Brown   *dm = v;
105a4121054SBarry Smith   PetscFunctionReturn(0);
106a4121054SBarry Smith }
107a4121054SBarry Smith 
10838221697SMatthew G. Knepley /*@
109bb7acecfSBarry Smith   DMClone - Creates a `DM` object with the same topology as the original.
11038221697SMatthew G. Knepley 
111d083f849SBarry Smith   Collective
11238221697SMatthew G. Knepley 
11338221697SMatthew G. Knepley   Input Parameter:
114bb7acecfSBarry Smith . dm - The original `DM` object
11538221697SMatthew G. Knepley 
11638221697SMatthew G. Knepley   Output Parameter:
117bb7acecfSBarry Smith . newdm  - The new `DM` object
11838221697SMatthew G. Knepley 
11938221697SMatthew G. Knepley   Level: beginner
12038221697SMatthew G. Knepley 
1211cb8cacdSPatrick Sanan   Notes:
122bb7acecfSBarry Smith   For some `DM` implementations this is a shallow clone, the result of which may share (reference counted) information with its parent. For example,
123bb7acecfSBarry Smith   `DMClone()` applied to a `DMPLEX` object will result in a new `DMPLEX` that shares the topology with the original `DMPLEX`. It does not
124bb7acecfSBarry Smith   share the `PetscSection` of the original `DM`.
1251bb6d2a8SBarry Smith 
126bb7acecfSBarry Smith   The clone is considered set up if the original has been set up.
12789706ed2SPatrick Sanan 
128bb7acecfSBarry Smith   Use `DMConvert()` for a general way to create new `DM` from a given `DM`
129bb7acecfSBarry Smith 
130bb7acecfSBarry Smith .seealso: `DMDestroy()`, `DMCreate()`, `DMSetType()`, `DMSetLocalSection()`, `DMSetGlobalSection()`, `DMPLEX`, `DMSetType()`, `DMConvert()`
1311bb6d2a8SBarry Smith 
13238221697SMatthew G. Knepley @*/
133d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClone(DM dm, DM *newdm)
134d71ae5a4SJacob Faibussowitsch {
13538221697SMatthew G. Knepley   PetscSF  sf;
13638221697SMatthew G. Knepley   Vec      coords;
13738221697SMatthew G. Knepley   void    *ctx;
1386858538eSMatthew G. Knepley   PetscInt dim, cdim, i;
13938221697SMatthew G. Knepley 
14038221697SMatthew G. Knepley   PetscFunctionBegin;
14138221697SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14238221697SMatthew G. Knepley   PetscValidPointer(newdm, 2);
1439566063dSJacob Faibussowitsch   PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), newdm));
1449566063dSJacob Faibussowitsch   PetscCall(DMCopyLabels(dm, *newdm, PETSC_COPY_VALUES, PETSC_TRUE, DM_COPY_LABELS_FAIL));
145ddf8437dSMatthew G. Knepley   (*newdm)->leveldown     = dm->leveldown;
146ddf8437dSMatthew G. Knepley   (*newdm)->levelup       = dm->levelup;
147c8a6034eSMark   (*newdm)->prealloc_only = dm->prealloc_only;
1489566063dSJacob Faibussowitsch   PetscCall(PetscFree((*newdm)->vectype));
1499566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*newdm)->vectype));
1509566063dSJacob Faibussowitsch   PetscCall(PetscFree((*newdm)->mattype));
1519566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*newdm)->mattype));
1529566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
1539566063dSJacob Faibussowitsch   PetscCall(DMSetDimension(*newdm, dim));
154dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, clone, newdm);
1553f22bcbcSToby Isaac   (*newdm)->setupcalled = dm->setupcalled;
1569566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sf));
1579566063dSJacob Faibussowitsch   PetscCall(DMSetPointSF(*newdm, sf));
1589566063dSJacob Faibussowitsch   PetscCall(DMGetApplicationContext(dm, &ctx));
1599566063dSJacob Faibussowitsch   PetscCall(DMSetApplicationContext(*newdm, ctx));
1606858538eSMatthew G. Knepley   for (i = 0; i < 2; ++i) {
1616858538eSMatthew G. Knepley     if (dm->coordinates[i].dm) {
162be4c1c3eSMatthew G. Knepley       DM           ncdm;
163be4c1c3eSMatthew G. Knepley       PetscSection cs;
1645a0206caSToby Isaac       PetscInt     pEnd = -1, pEndMax = -1;
165be4c1c3eSMatthew G. Knepley 
1666858538eSMatthew G. Knepley       PetscCall(DMGetLocalSection(dm->coordinates[i].dm, &cs));
1679566063dSJacob Faibussowitsch       if (cs) PetscCall(PetscSectionGetChart(cs, NULL, &pEnd));
1689566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Allreduce(&pEnd, &pEndMax, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm)));
1695a0206caSToby Isaac       if (pEndMax >= 0) {
1706858538eSMatthew G. Knepley         PetscCall(DMClone(dm->coordinates[i].dm, &ncdm));
1716858538eSMatthew G. Knepley         PetscCall(DMCopyDisc(dm->coordinates[i].dm, ncdm));
1729566063dSJacob Faibussowitsch         PetscCall(DMSetLocalSection(ncdm, cs));
1736858538eSMatthew G. Knepley         if (i) PetscCall(DMSetCellCoordinateDM(*newdm, ncdm));
1746858538eSMatthew G. Knepley         else PetscCall(DMSetCoordinateDM(*newdm, ncdm));
1759566063dSJacob Faibussowitsch         PetscCall(DMDestroy(&ncdm));
176be4c1c3eSMatthew G. Knepley       }
177be4c1c3eSMatthew G. Knepley     }
1786858538eSMatthew G. Knepley   }
1799566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
1809566063dSJacob Faibussowitsch   PetscCall(DMSetCoordinateDim(*newdm, cdim));
1819566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinatesLocal(dm, &coords));
18238221697SMatthew G. Knepley   if (coords) {
1839566063dSJacob Faibussowitsch     PetscCall(DMSetCoordinatesLocal(*newdm, coords));
18438221697SMatthew G. Knepley   } else {
1859566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinates(dm, &coords));
1869566063dSJacob Faibussowitsch     if (coords) PetscCall(DMSetCoordinates(*newdm, coords));
18738221697SMatthew G. Knepley   }
1886858538eSMatthew G. Knepley   PetscCall(DMGetCellCoordinatesLocal(dm, &coords));
1896858538eSMatthew G. Knepley   if (coords) {
1906858538eSMatthew G. Knepley     PetscCall(DMSetCellCoordinatesLocal(*newdm, coords));
1916858538eSMatthew G. Knepley   } else {
1926858538eSMatthew G. Knepley     PetscCall(DMGetCellCoordinates(dm, &coords));
1936858538eSMatthew G. Knepley     if (coords) PetscCall(DMSetCellCoordinates(*newdm, coords));
1946858538eSMatthew G. Knepley   }
19590b157c4SStefano Zampini   {
1964fb89dddSMatthew G. Knepley     const PetscReal *maxCell, *Lstart, *L;
1976858538eSMatthew G. Knepley 
1984fb89dddSMatthew G. Knepley     PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
1994fb89dddSMatthew G. Knepley     PetscCall(DMSetPeriodicity(*newdm, maxCell, Lstart, L));
200c6b900c6SMatthew G. Knepley   }
20134aa8a36SMatthew G. Knepley   {
20234aa8a36SMatthew G. Knepley     PetscBool useCone, useClosure;
20334aa8a36SMatthew G. Knepley 
2049566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, &useCone, &useClosure));
2059566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(*newdm, PETSC_DEFAULT, useCone, useClosure));
20634aa8a36SMatthew G. Knepley   }
20738221697SMatthew G. Knepley   PetscFunctionReturn(0);
20838221697SMatthew G. Knepley }
20938221697SMatthew G. Knepley 
2109a42bb27SBarry Smith /*@C
211bb7acecfSBarry Smith        DMSetVecType - Sets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()`
2129a42bb27SBarry Smith 
213d083f849SBarry Smith    Logically Collective on da
2149a42bb27SBarry Smith 
215147403d9SBarry Smith    Input Parameters:
2169a42bb27SBarry Smith +  da - initial distributed array
217bb7acecfSBarry Smith -  ctype - the vector type, for example `VECSTANDARD`, `VECCUDA`, or `VECVIENNACL`
2189a42bb27SBarry Smith 
2199a42bb27SBarry Smith    Options Database:
220147403d9SBarry Smith .   -dm_vec_type ctype - the type of vector to create
2219a42bb27SBarry Smith 
2229a42bb27SBarry Smith    Level: intermediate
2239a42bb27SBarry Smith 
224bb7acecfSBarry Smith .seealso: `DMCreate()`, `DMDestroy()`, `DM`, `DMDAInterpolationType`, `VecType`, `DMGetVecType()`, `DMSetMatType()`, `DMGetMatType()`,
225bb7acecfSBarry Smith           `VECSTANDARD`, `VECCUDA`, `VECVIENNACL`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`
2269a42bb27SBarry Smith @*/
227d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVecType(DM da, VecType ctype)
228d71ae5a4SJacob Faibussowitsch {
2299a42bb27SBarry Smith   PetscFunctionBegin;
2309a42bb27SBarry Smith   PetscValidHeaderSpecific(da, DM_CLASSID, 1);
2319566063dSJacob Faibussowitsch   PetscCall(PetscFree(da->vectype));
2329566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(ctype, (char **)&da->vectype));
2339a42bb27SBarry Smith   PetscFunctionReturn(0);
2349a42bb27SBarry Smith }
2359a42bb27SBarry Smith 
236c0dedaeaSBarry Smith /*@C
237bb7acecfSBarry Smith        DMGetVecType - Gets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()`
238c0dedaeaSBarry Smith 
239d083f849SBarry Smith    Logically Collective on da
240c0dedaeaSBarry Smith 
241c0dedaeaSBarry Smith    Input Parameter:
242c0dedaeaSBarry Smith .  da - initial distributed array
243c0dedaeaSBarry Smith 
244c0dedaeaSBarry Smith    Output Parameter:
245c0dedaeaSBarry Smith .  ctype - the vector type
246c0dedaeaSBarry Smith 
247c0dedaeaSBarry Smith    Level: intermediate
248c0dedaeaSBarry Smith 
249db781477SPatrick Sanan .seealso: `DMCreate()`, `DMDestroy()`, `DM`, `DMDAInterpolationType`, `VecType`, `DMSetMatType()`, `DMGetMatType()`, `DMSetVecType()`
250c0dedaeaSBarry Smith @*/
251d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetVecType(DM da, VecType *ctype)
252d71ae5a4SJacob Faibussowitsch {
253c0dedaeaSBarry Smith   PetscFunctionBegin;
254c0dedaeaSBarry Smith   PetscValidHeaderSpecific(da, DM_CLASSID, 1);
255c0dedaeaSBarry Smith   *ctype = da->vectype;
256c0dedaeaSBarry Smith   PetscFunctionReturn(0);
257c0dedaeaSBarry Smith }
258c0dedaeaSBarry Smith 
2595f1ad066SMatthew G Knepley /*@
260bb7acecfSBarry Smith   VecGetDM - Gets the `DM` defining the data layout of the vector
2615f1ad066SMatthew G Knepley 
2625f1ad066SMatthew G Knepley   Not collective
2635f1ad066SMatthew G Knepley 
2645f1ad066SMatthew G Knepley   Input Parameter:
265bb7acecfSBarry Smith . v - The `Vec`
2665f1ad066SMatthew G Knepley 
2675f1ad066SMatthew G Knepley   Output Parameter:
268bb7acecfSBarry Smith . dm - The `DM`
2695f1ad066SMatthew G Knepley 
2705f1ad066SMatthew G Knepley   Level: intermediate
2715f1ad066SMatthew G Knepley 
272bb7acecfSBarry Smith   Note:
273bb7acecfSBarry Smith   A `Vec` may not have a `DM` associated with it.
274bb7acecfSBarry Smith 
275bb7acecfSBarry Smith .seealso: `DM`, `VecSetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()`
2765f1ad066SMatthew G Knepley @*/
277d71ae5a4SJacob Faibussowitsch PetscErrorCode VecGetDM(Vec v, DM *dm)
278d71ae5a4SJacob Faibussowitsch {
2795f1ad066SMatthew G Knepley   PetscFunctionBegin;
2805f1ad066SMatthew G Knepley   PetscValidHeaderSpecific(v, VEC_CLASSID, 1);
2815f1ad066SMatthew G Knepley   PetscValidPointer(dm, 2);
2829566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)v, "__PETSc_dm", (PetscObject *)dm));
2835f1ad066SMatthew G Knepley   PetscFunctionReturn(0);
2845f1ad066SMatthew G Knepley }
2855f1ad066SMatthew G Knepley 
2865f1ad066SMatthew G Knepley /*@
287bb7acecfSBarry Smith   VecSetDM - Sets the `DM` defining the data layout of the vector.
2885f1ad066SMatthew G Knepley 
2895f1ad066SMatthew G Knepley   Not collective
2905f1ad066SMatthew G Knepley 
2915f1ad066SMatthew G Knepley   Input Parameters:
292bb7acecfSBarry Smith + v - The `Vec`
293bb7acecfSBarry Smith - dm - The `DM`
2945f1ad066SMatthew G Knepley 
295bb7acecfSBarry Smith   Note:
296bb7acecfSBarry Smith   This is rarely used, generally one uses `DMGetLocalVector()` or  `DMGetGlobalVector()` to create a vector associated with a given `DM`
297d9805387SMatthew G. Knepley 
298bb7acecfSBarry Smith   This is NOT the same as `DMCreateGlobalVector()` since it does not change the view methods or perform other customization, but merely sets the `DM` member.
299bb7acecfSBarry Smith 
300bb7acecfSBarry Smith   Level: developer
3015f1ad066SMatthew G Knepley 
302db781477SPatrick Sanan .seealso: `VecGetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()`
3035f1ad066SMatthew G Knepley @*/
304d71ae5a4SJacob Faibussowitsch PetscErrorCode VecSetDM(Vec v, DM dm)
305d71ae5a4SJacob Faibussowitsch {
3065f1ad066SMatthew G Knepley   PetscFunctionBegin;
3075f1ad066SMatthew G Knepley   PetscValidHeaderSpecific(v, VEC_CLASSID, 1);
308d7f50e27SLisandro Dalcin   if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2);
3099566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)v, "__PETSc_dm", (PetscObject)dm));
3105f1ad066SMatthew G Knepley   PetscFunctionReturn(0);
3115f1ad066SMatthew G Knepley }
3125f1ad066SMatthew G Knepley 
313521d9a4cSLisandro Dalcin /*@C
314bb7acecfSBarry Smith        DMSetISColoringType - Sets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM`
3158f1509bcSBarry Smith 
316d083f849SBarry Smith    Logically Collective on dm
3178f1509bcSBarry Smith 
3188f1509bcSBarry Smith    Input Parameters:
319bb7acecfSBarry Smith +  dm - the `DM` context
3208f1509bcSBarry Smith -  ctype - the matrix type
3218f1509bcSBarry Smith 
3228f1509bcSBarry Smith    Options Database:
3238f1509bcSBarry Smith .   -dm_is_coloring_type - global or local
3248f1509bcSBarry Smith 
3258f1509bcSBarry Smith    Level: intermediate
3268f1509bcSBarry Smith 
327db781477SPatrick Sanan .seealso: `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`,
328bb7acecfSBarry Smith           `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL`
3298f1509bcSBarry Smith @*/
330d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetISColoringType(DM dm, ISColoringType ctype)
331d71ae5a4SJacob Faibussowitsch {
3328f1509bcSBarry Smith   PetscFunctionBegin;
3338f1509bcSBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3348f1509bcSBarry Smith   dm->coloringtype = ctype;
3358f1509bcSBarry Smith   PetscFunctionReturn(0);
3368f1509bcSBarry Smith }
3378f1509bcSBarry Smith 
3388f1509bcSBarry Smith /*@C
339bb7acecfSBarry Smith        DMGetISColoringType - Gets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM`
340521d9a4cSLisandro Dalcin 
341d083f849SBarry Smith    Logically Collective on dm
342521d9a4cSLisandro Dalcin 
343521d9a4cSLisandro Dalcin    Input Parameter:
344bb7acecfSBarry Smith .  dm - the `DM` context
3458f1509bcSBarry Smith 
3468f1509bcSBarry Smith    Output Parameter:
3478f1509bcSBarry Smith .  ctype - the matrix type
3488f1509bcSBarry Smith 
3498f1509bcSBarry Smith    Options Database:
3508f1509bcSBarry Smith .   -dm_is_coloring_type - global or local
3518f1509bcSBarry Smith 
3528f1509bcSBarry Smith    Level: intermediate
3538f1509bcSBarry Smith 
354db781477SPatrick Sanan .seealso: `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`,
355bb7acecfSBarry Smith           `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL`
3568f1509bcSBarry Smith @*/
357d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetISColoringType(DM dm, ISColoringType *ctype)
358d71ae5a4SJacob Faibussowitsch {
3598f1509bcSBarry Smith   PetscFunctionBegin;
3608f1509bcSBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3618f1509bcSBarry Smith   *ctype = dm->coloringtype;
3628f1509bcSBarry Smith   PetscFunctionReturn(0);
3638f1509bcSBarry Smith }
3648f1509bcSBarry Smith 
3658f1509bcSBarry Smith /*@C
366bb7acecfSBarry Smith        DMSetMatType - Sets the type of matrix created with `DMCreateMatrix()`
3678f1509bcSBarry Smith 
368d083f849SBarry Smith    Logically Collective on dm
3698f1509bcSBarry Smith 
3708f1509bcSBarry Smith    Input Parameters:
371bb7acecfSBarry Smith +  dm - the `DM` context
372bb7acecfSBarry Smith -  ctype - the matrix type, for example `MATMPIAIJ`
373521d9a4cSLisandro Dalcin 
374521d9a4cSLisandro Dalcin    Options Database:
375bb7acecfSBarry Smith .   -dm_mat_type ctype - the type of the matrix to create, for example mpiaij
376521d9a4cSLisandro Dalcin 
377521d9a4cSLisandro Dalcin    Level: intermediate
378521d9a4cSLisandro Dalcin 
379bb7acecfSBarry Smith .seealso: `MatType`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, `DMSetMatType()`, `DMGetMatType()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()`
380521d9a4cSLisandro Dalcin @*/
381d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatType(DM dm, MatType ctype)
382d71ae5a4SJacob Faibussowitsch {
383521d9a4cSLisandro Dalcin   PetscFunctionBegin;
384521d9a4cSLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3859566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->mattype));
3869566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(ctype, (char **)&dm->mattype));
387521d9a4cSLisandro Dalcin   PetscFunctionReturn(0);
388521d9a4cSLisandro Dalcin }
389521d9a4cSLisandro Dalcin 
390c0dedaeaSBarry Smith /*@C
391bb7acecfSBarry Smith        DMGetMatType - Gets the type of matrix created with `DMCreateMatrix()`
392c0dedaeaSBarry Smith 
393d083f849SBarry Smith    Logically Collective on dm
394c0dedaeaSBarry Smith 
395c0dedaeaSBarry Smith    Input Parameter:
396bb7acecfSBarry Smith .  dm - the `DM` context
397c0dedaeaSBarry Smith 
398c0dedaeaSBarry Smith    Output Parameter:
399c0dedaeaSBarry Smith .  ctype - the matrix type
400c0dedaeaSBarry Smith 
401c0dedaeaSBarry Smith    Level: intermediate
402c0dedaeaSBarry Smith 
403db781477SPatrick Sanan .seealso: `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMSetMatType()`, `DMSetMatType()`, `DMGetMatType()`
404c0dedaeaSBarry Smith @*/
405d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetMatType(DM dm, MatType *ctype)
406d71ae5a4SJacob Faibussowitsch {
407c0dedaeaSBarry Smith   PetscFunctionBegin;
408c0dedaeaSBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
409c0dedaeaSBarry Smith   *ctype = dm->mattype;
410c0dedaeaSBarry Smith   PetscFunctionReturn(0);
411c0dedaeaSBarry Smith }
412c0dedaeaSBarry Smith 
413c688c046SMatthew G Knepley /*@
414bb7acecfSBarry Smith   MatGetDM - Gets the `DM` defining the data layout of the matrix
415c688c046SMatthew G Knepley 
416c688c046SMatthew G Knepley   Not collective
417c688c046SMatthew G Knepley 
418c688c046SMatthew G Knepley   Input Parameter:
419bb7acecfSBarry Smith . A - The `Mat`
420c688c046SMatthew G Knepley 
421c688c046SMatthew G Knepley   Output Parameter:
422bb7acecfSBarry Smith . dm - The `DM`
423c688c046SMatthew G Knepley 
424c688c046SMatthew G Knepley   Level: intermediate
425c688c046SMatthew G Knepley 
426bb7acecfSBarry Smith   Note:
427bb7acecfSBarry Smith   A matrix may not have a `DM` associated with it
428bb7acecfSBarry Smith 
429bb7acecfSBarry Smith   Developer Note:
430bb7acecfSBarry Smith   Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with the `Mat` through a `PetscObjectCompose()` operation
4318f1509bcSBarry Smith 
432db781477SPatrick Sanan .seealso: `MatSetDM()`, `DMCreateMatrix()`, `DMSetMatType()`
433c688c046SMatthew G Knepley @*/
434d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDM(Mat A, DM *dm)
435d71ae5a4SJacob Faibussowitsch {
436c688c046SMatthew G Knepley   PetscFunctionBegin;
437c688c046SMatthew G Knepley   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
438c688c046SMatthew G Knepley   PetscValidPointer(dm, 2);
4399566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_dm", (PetscObject *)dm));
440c688c046SMatthew G Knepley   PetscFunctionReturn(0);
441c688c046SMatthew G Knepley }
442c688c046SMatthew G Knepley 
443c688c046SMatthew G Knepley /*@
444bb7acecfSBarry Smith   MatSetDM - Sets the `DM` defining the data layout of the matrix
445c688c046SMatthew G Knepley 
446c688c046SMatthew G Knepley   Not collective
447c688c046SMatthew G Knepley 
448c688c046SMatthew G Knepley   Input Parameters:
449c688c046SMatthew G Knepley + A - The Mat
450c688c046SMatthew G Knepley - dm - The DM
451c688c046SMatthew G Knepley 
452bb7acecfSBarry Smith   Level: developer
453c688c046SMatthew G Knepley 
454bb7acecfSBarry Smith   Note:
455bb7acecfSBarry Smith   This is rarely used in practice, rather `DMCreateMatrix()` is used to create a matrix associated with a particular `DM`
456bb7acecfSBarry Smith 
457bb7acecfSBarry Smith   Developer Note:
458bb7acecfSBarry Smith   Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with
459bb7acecfSBarry Smith   the `Mat` through a `PetscObjectCompose()` operation
4608f1509bcSBarry Smith 
461db781477SPatrick Sanan .seealso: `MatGetDM()`, `DMCreateMatrix()`, `DMSetMatType()`
462c688c046SMatthew G Knepley @*/
463d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetDM(Mat A, DM dm)
464d71ae5a4SJacob Faibussowitsch {
465c688c046SMatthew G Knepley   PetscFunctionBegin;
466c688c046SMatthew G Knepley   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
4678865f1eaSKarl Rupp   if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2);
4689566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_dm", (PetscObject)dm));
469c688c046SMatthew G Knepley   PetscFunctionReturn(0);
470c688c046SMatthew G Knepley }
471c688c046SMatthew G Knepley 
4729a42bb27SBarry Smith /*@C
473bb7acecfSBarry Smith    DMSetOptionsPrefix - Sets the prefix prepended to all option names when searching through the options database
4749a42bb27SBarry Smith 
475d083f849SBarry Smith    Logically Collective on dm
4769a42bb27SBarry Smith 
477d8d19677SJose E. Roman    Input Parameters:
478bb7acecfSBarry Smith +  da - the `DM` context
479bb7acecfSBarry Smith -  prefix - the prefix to prepend
4809a42bb27SBarry Smith 
4819a42bb27SBarry Smith    Notes:
4829a42bb27SBarry Smith    A hyphen (-) must NOT be given at the beginning of the prefix name.
4839a42bb27SBarry Smith    The first character of all runtime options is AUTOMATICALLY the hyphen.
4849a42bb27SBarry Smith 
4859a42bb27SBarry Smith    Level: advanced
4869a42bb27SBarry Smith 
487bb7acecfSBarry Smith .seealso: `PetscObjectSetOptionsPrefix()`, `DMSetFromOptions()`
4889a42bb27SBarry Smith @*/
489d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOptionsPrefix(DM dm, const char prefix[])
490d71ae5a4SJacob Faibussowitsch {
4919a42bb27SBarry Smith   PetscFunctionBegin;
4929a42bb27SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4939566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, prefix));
4941baa6e33SBarry Smith   if (dm->sf) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sf, prefix));
4951baa6e33SBarry Smith   if (dm->sectionSF) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sectionSF, prefix));
4969a42bb27SBarry Smith   PetscFunctionReturn(0);
4979a42bb27SBarry Smith }
4989a42bb27SBarry Smith 
49931697293SDave May /*@C
500bb7acecfSBarry Smith    DMAppendOptionsPrefix - Appends an additional string to an already exising prefix used for searching for
501bb7acecfSBarry Smith    `DM` options in the options database.
50231697293SDave May 
503d083f849SBarry Smith    Logically Collective on dm
50431697293SDave May 
50531697293SDave May    Input Parameters:
506bb7acecfSBarry Smith +  dm - the `DM` context
507bb7acecfSBarry Smith -  prefix - the string to append to the current prefix
50831697293SDave May 
50931697293SDave May    Notes:
510bb7acecfSBarry Smith    If the `DM` does not currently have an options prefix then this value is used alone as the prefix as if `DMSetOptionsPrefix()` had been called.
51131697293SDave May    A hyphen (-) must NOT be given at the beginning of the prefix name.
51231697293SDave May    The first character of all runtime options is AUTOMATICALLY the hyphen.
51331697293SDave May 
51431697293SDave May    Level: advanced
51531697293SDave May 
516bb7acecfSBarry Smith .seealso: `DMSetOptionsPrefix()`, `DMGetOptionsPrefix()`, `PetscObjectAppendOptionsPrefix()`, `DMSetFromOptions()`
51731697293SDave May @*/
518d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAppendOptionsPrefix(DM dm, const char prefix[])
519d71ae5a4SJacob Faibussowitsch {
52031697293SDave May   PetscFunctionBegin;
52131697293SDave May   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5229566063dSJacob Faibussowitsch   PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, prefix));
52331697293SDave May   PetscFunctionReturn(0);
52431697293SDave May }
52531697293SDave May 
52631697293SDave May /*@C
52731697293SDave May    DMGetOptionsPrefix - Gets the prefix used for searching for all
528bb7acecfSBarry Smith    DM options in the options database.
52931697293SDave May 
53031697293SDave May    Not Collective
53131697293SDave May 
53231697293SDave May    Input Parameters:
533bb7acecfSBarry Smith .  dm - the `DM` context
53431697293SDave May 
53531697293SDave May    Output Parameters:
53631697293SDave May .  prefix - pointer to the prefix string used is returned
53731697293SDave May 
538bb7acecfSBarry Smith    Fortran Note:
53995452b02SPatrick Sanan     On the fortran side, the user should pass in a string 'prefix' of
54031697293SDave May    sufficient length to hold the prefix.
54131697293SDave May 
54231697293SDave May    Level: advanced
54331697293SDave May 
544bb7acecfSBarry Smith .seealso: `DMSetOptionsPrefix()`, `DMAppendOptionsPrefix()`, `DMSetFromOptions()`
54531697293SDave May @*/
546d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOptionsPrefix(DM dm, const char *prefix[])
547d71ae5a4SJacob Faibussowitsch {
54831697293SDave May   PetscFunctionBegin;
54931697293SDave May   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5509566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, prefix));
55131697293SDave May   PetscFunctionReturn(0);
55231697293SDave May }
55331697293SDave May 
55462e5d2d2SJDBetteridge static PetscErrorCode DMCountNonCyclicReferences_Internal(DM dm, PetscBool recurseCoarse, PetscBool recurseFine, PetscInt *ncrefct)
555d71ae5a4SJacob Faibussowitsch {
5566eb26441SStefano Zampini   PetscInt refct = ((PetscObject)dm)->refct;
55788bdff64SToby Isaac 
55888bdff64SToby Isaac   PetscFunctionBegin;
559aab5bcd8SJed Brown   *ncrefct = 0;
56088bdff64SToby Isaac   if (dm->coarseMesh && dm->coarseMesh->fineMesh == dm) {
56188bdff64SToby Isaac     refct--;
56288bdff64SToby Isaac     if (recurseCoarse) {
56388bdff64SToby Isaac       PetscInt coarseCount;
56488bdff64SToby Isaac 
56562e5d2d2SJDBetteridge       PetscCall(DMCountNonCyclicReferences_Internal(dm->coarseMesh, PETSC_TRUE, PETSC_FALSE, &coarseCount));
56688bdff64SToby Isaac       refct += coarseCount;
56788bdff64SToby Isaac     }
56888bdff64SToby Isaac   }
56988bdff64SToby Isaac   if (dm->fineMesh && dm->fineMesh->coarseMesh == dm) {
57088bdff64SToby Isaac     refct--;
57188bdff64SToby Isaac     if (recurseFine) {
57288bdff64SToby Isaac       PetscInt fineCount;
57388bdff64SToby Isaac 
57462e5d2d2SJDBetteridge       PetscCall(DMCountNonCyclicReferences_Internal(dm->fineMesh, PETSC_FALSE, PETSC_TRUE, &fineCount));
57588bdff64SToby Isaac       refct += fineCount;
57688bdff64SToby Isaac     }
57788bdff64SToby Isaac   }
57888bdff64SToby Isaac   *ncrefct = refct;
57988bdff64SToby Isaac   PetscFunctionReturn(0);
58088bdff64SToby Isaac }
58188bdff64SToby Isaac 
58262e5d2d2SJDBetteridge /* Generic wrapper for DMCountNonCyclicReferences_Internal() */
58362e5d2d2SJDBetteridge PetscErrorCode DMCountNonCyclicReferences(PetscObject dm, PetscInt *ncrefct)
58462e5d2d2SJDBetteridge {
58562e5d2d2SJDBetteridge   PetscFunctionBegin;
58662e5d2d2SJDBetteridge   PetscCall(DMCountNonCyclicReferences_Internal((DM)dm, PETSC_TRUE, PETSC_TRUE, ncrefct));
58762e5d2d2SJDBetteridge   PetscFunctionReturn(0);
58862e5d2d2SJDBetteridge }
58962e5d2d2SJDBetteridge 
590d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyLabelLinkList_Internal(DM dm)
591d71ae5a4SJacob Faibussowitsch {
5925d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
593354557abSToby Isaac 
594354557abSToby Isaac   PetscFunctionBegin;
595354557abSToby Isaac   /* destroy the labels */
596354557abSToby Isaac   while (next) {
597354557abSToby Isaac     DMLabelLink tmp = next->next;
598354557abSToby Isaac 
5995d80c0bfSVaclav Hapla     if (next->label == dm->depthLabel) dm->depthLabel = NULL;
600ba2698f1SMatthew G. Knepley     if (next->label == dm->celltypeLabel) dm->celltypeLabel = NULL;
6019566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&next->label));
6029566063dSJacob Faibussowitsch     PetscCall(PetscFree(next));
603354557abSToby Isaac     next = tmp;
604354557abSToby Isaac   }
6055d80c0bfSVaclav Hapla   dm->labels = NULL;
606354557abSToby Isaac   PetscFunctionReturn(0);
607354557abSToby Isaac }
608354557abSToby Isaac 
609d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyCoordinates_Private(DMCoordinates *c)
610d71ae5a4SJacob Faibussowitsch {
6116858538eSMatthew G. Knepley   PetscFunctionBegin;
6126858538eSMatthew G. Knepley   c->dim = PETSC_DEFAULT;
6136858538eSMatthew G. Knepley   PetscCall(DMDestroy(&c->dm));
6146858538eSMatthew G. Knepley   PetscCall(VecDestroy(&c->x));
6156858538eSMatthew G. Knepley   PetscCall(VecDestroy(&c->xl));
6166858538eSMatthew G. Knepley   PetscCall(DMFieldDestroy(&c->field));
6176858538eSMatthew G. Knepley   PetscFunctionReturn(0);
6186858538eSMatthew G. Knepley }
6196858538eSMatthew G. Knepley 
6201fb7b255SJunchao Zhang /*@C
621bb7acecfSBarry Smith     DMDestroy - Destroys a `DM`.
62247c6ae99SBarry Smith 
623d083f849SBarry Smith     Collective on dm
62447c6ae99SBarry Smith 
62547c6ae99SBarry Smith     Input Parameter:
626bb7acecfSBarry Smith .   dm - the `DM` object to destroy
62747c6ae99SBarry Smith 
62847c6ae99SBarry Smith     Level: developer
62947c6ae99SBarry Smith 
630bb7acecfSBarry Smith .seealso: `DMCreate()`, `DMType`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
63147c6ae99SBarry Smith 
63247c6ae99SBarry Smith @*/
633d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroy(DM *dm)
634d71ae5a4SJacob Faibussowitsch {
6356eb26441SStefano Zampini   PetscInt       cnt;
636dfe15315SJed Brown   DMNamedVecLink nlink, nnext;
63747c6ae99SBarry Smith 
63847c6ae99SBarry Smith   PetscFunctionBegin;
6396bf464f9SBarry Smith   if (!*dm) PetscFunctionReturn(0);
6406bf464f9SBarry Smith   PetscValidHeaderSpecific((*dm), DM_CLASSID, 1);
64187e657c6SBarry Smith 
64288bdff64SToby Isaac   /* count all non-cyclic references in the doubly-linked list of coarse<->fine meshes */
64362e5d2d2SJDBetteridge   PetscCall(DMCountNonCyclicReferences_Internal(*dm, PETSC_TRUE, PETSC_TRUE, &cnt));
64488bdff64SToby Isaac   --((PetscObject)(*dm))->refct;
6459371c9d4SSatish Balay   if (--cnt > 0) {
6469371c9d4SSatish Balay     *dm = NULL;
6479371c9d4SSatish Balay     PetscFunctionReturn(0);
6489371c9d4SSatish Balay   }
6496bf464f9SBarry Smith   if (((PetscObject)(*dm))->refct < 0) PetscFunctionReturn(0);
6506bf464f9SBarry Smith   ((PetscObject)(*dm))->refct = 0;
6516eb26441SStefano Zampini 
6529566063dSJacob Faibussowitsch   PetscCall(DMClearGlobalVectors(*dm));
6539566063dSJacob Faibussowitsch   PetscCall(DMClearLocalVectors(*dm));
6546eb26441SStefano Zampini 
655f490541aSPeter Brune   nnext              = (*dm)->namedglobal;
6560298fd71SBarry Smith   (*dm)->namedglobal = NULL;
657f490541aSPeter Brune   for (nlink = nnext; nlink; nlink = nnext) { /* Destroy the named vectors */
6582348bcf4SPeter Brune     nnext = nlink->next;
6597a8be351SBarry Smith     PetscCheck(nlink->status == DMVEC_STATUS_IN, ((PetscObject)*dm)->comm, PETSC_ERR_ARG_WRONGSTATE, "DM still has Vec named '%s' checked out", nlink->name);
6609566063dSJacob Faibussowitsch     PetscCall(PetscFree(nlink->name));
6619566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&nlink->X));
6629566063dSJacob Faibussowitsch     PetscCall(PetscFree(nlink));
6632348bcf4SPeter Brune   }
664f490541aSPeter Brune   nnext             = (*dm)->namedlocal;
6650298fd71SBarry Smith   (*dm)->namedlocal = NULL;
666f490541aSPeter Brune   for (nlink = nnext; nlink; nlink = nnext) { /* Destroy the named local vectors */
667f490541aSPeter Brune     nnext = nlink->next;
6687a8be351SBarry Smith     PetscCheck(nlink->status == DMVEC_STATUS_IN, ((PetscObject)*dm)->comm, PETSC_ERR_ARG_WRONGSTATE, "DM still has Vec named '%s' checked out", nlink->name);
6699566063dSJacob Faibussowitsch     PetscCall(PetscFree(nlink->name));
6709566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&nlink->X));
6719566063dSJacob Faibussowitsch     PetscCall(PetscFree(nlink));
672f490541aSPeter Brune   }
6732348bcf4SPeter Brune 
674b17ce1afSJed Brown   /* Destroy the list of hooks */
675c833c3b5SJed Brown   {
676c833c3b5SJed Brown     DMCoarsenHookLink link, next;
677b17ce1afSJed Brown     for (link = (*dm)->coarsenhook; link; link = next) {
678b17ce1afSJed Brown       next = link->next;
6799566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
680b17ce1afSJed Brown     }
6810298fd71SBarry Smith     (*dm)->coarsenhook = NULL;
682c833c3b5SJed Brown   }
683c833c3b5SJed Brown   {
684c833c3b5SJed Brown     DMRefineHookLink link, next;
685c833c3b5SJed Brown     for (link = (*dm)->refinehook; link; link = next) {
686c833c3b5SJed Brown       next = link->next;
6879566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
688c833c3b5SJed Brown     }
6890298fd71SBarry Smith     (*dm)->refinehook = NULL;
690c833c3b5SJed Brown   }
691be081cd6SPeter Brune   {
692be081cd6SPeter Brune     DMSubDomainHookLink link, next;
693be081cd6SPeter Brune     for (link = (*dm)->subdomainhook; link; link = next) {
694be081cd6SPeter Brune       next = link->next;
6959566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
696be081cd6SPeter Brune     }
6970298fd71SBarry Smith     (*dm)->subdomainhook = NULL;
698be081cd6SPeter Brune   }
699baf369e7SPeter Brune   {
700baf369e7SPeter Brune     DMGlobalToLocalHookLink link, next;
701baf369e7SPeter Brune     for (link = (*dm)->gtolhook; link; link = next) {
702baf369e7SPeter Brune       next = link->next;
7039566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
704baf369e7SPeter Brune     }
7050298fd71SBarry Smith     (*dm)->gtolhook = NULL;
706baf369e7SPeter Brune   }
707d4d07f1eSToby Isaac   {
708d4d07f1eSToby Isaac     DMLocalToGlobalHookLink link, next;
709d4d07f1eSToby Isaac     for (link = (*dm)->ltoghook; link; link = next) {
710d4d07f1eSToby Isaac       next = link->next;
7119566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
712d4d07f1eSToby Isaac     }
713d4d07f1eSToby Isaac     (*dm)->ltoghook = NULL;
714d4d07f1eSToby Isaac   }
715aa1993deSMatthew G Knepley   /* Destroy the work arrays */
716aa1993deSMatthew G Knepley   {
717aa1993deSMatthew G Knepley     DMWorkLink link, next;
7187a8be351SBarry Smith     PetscCheck(!(*dm)->workout, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Work array still checked out");
719aa1993deSMatthew G Knepley     for (link = (*dm)->workin; link; link = next) {
720aa1993deSMatthew G Knepley       next = link->next;
7219566063dSJacob Faibussowitsch       PetscCall(PetscFree(link->mem));
7229566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
723aa1993deSMatthew G Knepley     }
7240298fd71SBarry Smith     (*dm)->workin = NULL;
725aa1993deSMatthew G Knepley   }
726c58f1c22SToby Isaac   /* destroy the labels */
7279566063dSJacob Faibussowitsch   PetscCall(DMDestroyLabelLinkList_Internal(*dm));
728f4cdcedcSVaclav Hapla   /* destroy the fields */
7299566063dSJacob Faibussowitsch   PetscCall(DMClearFields(*dm));
730f4cdcedcSVaclav Hapla   /* destroy the boundaries */
731e6f8dbb6SToby Isaac   {
732e6f8dbb6SToby Isaac     DMBoundary next = (*dm)->boundary;
733e6f8dbb6SToby Isaac     while (next) {
734e6f8dbb6SToby Isaac       DMBoundary b = next;
735e6f8dbb6SToby Isaac 
736e6f8dbb6SToby Isaac       next = b->next;
7379566063dSJacob Faibussowitsch       PetscCall(PetscFree(b));
738e6f8dbb6SToby Isaac     }
739e6f8dbb6SToby Isaac   }
740b17ce1afSJed Brown 
7419566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&(*dm)->dmksp));
7429566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&(*dm)->dmsnes));
7439566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&(*dm)->dmts));
74452536dc3SBarry Smith 
74548a46eb9SPierre Jolivet   if ((*dm)->ctx && (*dm)->ctxdestroy) PetscCall((*(*dm)->ctxdestroy)(&(*dm)->ctx));
7469566063dSJacob Faibussowitsch   PetscCall(MatFDColoringDestroy(&(*dm)->fd));
7479566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&(*dm)->ltogmap));
7489566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->vectype));
7499566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->mattype));
75088ed4aceSMatthew G Knepley 
7519566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&(*dm)->localSection));
7529566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&(*dm)->globalSection));
7539566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&(*dm)->map));
7549566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&(*dm)->defaultConstraint.section));
7559566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&(*dm)->defaultConstraint.mat));
7569566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&(*dm)->sf));
7579566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&(*dm)->sectionSF));
758736995cdSBlaise Bourdin   if ((*dm)->useNatural) {
75948a46eb9SPierre Jolivet     if ((*dm)->sfNatural) PetscCall(PetscSFDestroy(&(*dm)->sfNatural));
7609566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)(*dm)->sfMigration));
761736995cdSBlaise Bourdin   }
7629a2a23afSMatthew G. Knepley   {
7639a2a23afSMatthew G. Knepley     Vec     *auxData;
7649a2a23afSMatthew G. Knepley     PetscInt n, i, off = 0;
7659a2a23afSMatthew G. Knepley 
7669566063dSJacob Faibussowitsch     PetscCall(PetscHMapAuxGetSize((*dm)->auxData, &n));
7679566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(n, &auxData));
7689566063dSJacob Faibussowitsch     PetscCall(PetscHMapAuxGetVals((*dm)->auxData, &off, auxData));
7699566063dSJacob Faibussowitsch     for (i = 0; i < n; ++i) PetscCall(VecDestroy(&auxData[i]));
7709566063dSJacob Faibussowitsch     PetscCall(PetscFree(auxData));
7719566063dSJacob Faibussowitsch     PetscCall(PetscHMapAuxDestroy(&(*dm)->auxData));
7729a2a23afSMatthew G. Knepley   }
77348a46eb9SPierre Jolivet   if ((*dm)->coarseMesh && (*dm)->coarseMesh->fineMesh == *dm) PetscCall(DMSetFineDM((*dm)->coarseMesh, NULL));
7746eb26441SStefano Zampini 
7759566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->coarseMesh));
77648a46eb9SPierre Jolivet   if ((*dm)->fineMesh && (*dm)->fineMesh->coarseMesh == *dm) PetscCall(DMSetCoarseDM((*dm)->fineMesh, NULL));
7779566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->fineMesh));
7784fb89dddSMatthew G. Knepley   PetscCall(PetscFree((*dm)->Lstart));
7799566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->L));
7809566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->maxCell));
7816858538eSMatthew G. Knepley   PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[0]));
7826858538eSMatthew G. Knepley   PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[1]));
7839566063dSJacob Faibussowitsch   if ((*dm)->transformDestroy) PetscCall((*(*dm)->transformDestroy)(*dm, (*dm)->transformCtx));
7849566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->transformDM));
7859566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&(*dm)->transform));
7866636e97aSMatthew G Knepley 
7879566063dSJacob Faibussowitsch   PetscCall(DMClearDS(*dm));
7889566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->dmBC));
789e04113cfSBarry Smith   /* if memory was published with SAWs then destroy it */
7909566063dSJacob Faibussowitsch   PetscCall(PetscObjectSAWsViewOff((PetscObject)*dm));
791732e2eb9SMatthew G Knepley 
79248a46eb9SPierre Jolivet   if ((*dm)->ops->destroy) PetscCall((*(*dm)->ops->destroy)(*dm));
7939566063dSJacob Faibussowitsch   PetscCall(DMMonitorCancel(*dm));
794f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED
7959566063dSJacob Faibussowitsch   PetscCallCEED(CeedElemRestrictionDestroy(&(*dm)->ceedERestrict));
7969566063dSJacob Faibussowitsch   PetscCallCEED(CeedDestroy(&(*dm)->ceed));
797f918ec44SMatthew G. Knepley #endif
798435a35e8SMatthew G Knepley   /* We do not destroy (*dm)->data here so that we can reference count backend objects */
7999566063dSJacob Faibussowitsch   PetscCall(PetscHeaderDestroy(dm));
80047c6ae99SBarry Smith   PetscFunctionReturn(0);
80147c6ae99SBarry Smith }
80247c6ae99SBarry Smith 
803d7bf68aeSBarry Smith /*@
804bb7acecfSBarry Smith     DMSetUp - sets up the data structures inside a `DM` object
805d7bf68aeSBarry Smith 
806d083f849SBarry Smith     Collective on dm
807d7bf68aeSBarry Smith 
808d7bf68aeSBarry Smith     Input Parameter:
809bb7acecfSBarry Smith .   dm - the `DM` object to setup
810d7bf68aeSBarry Smith 
811bb7acecfSBarry Smith     Level: intermediate
812d7bf68aeSBarry Smith 
813bb7acecfSBarry Smith     Note:
814bb7acecfSBarry Smith     This is usually called after various parameter setting operations and `DMSetFromOptions()` are called on the `DM`
815bb7acecfSBarry Smith 
816bb7acecfSBarry Smith .seealso: `DM`, `DMCreate()`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
817d7bf68aeSBarry Smith 
818d7bf68aeSBarry Smith @*/
819d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUp(DM dm)
820d71ae5a4SJacob Faibussowitsch {
821d7bf68aeSBarry Smith   PetscFunctionBegin;
822171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8238387afaaSJed Brown   if (dm->setupcalled) PetscFunctionReturn(0);
824dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, setup);
8258387afaaSJed Brown   dm->setupcalled = PETSC_TRUE;
826d7bf68aeSBarry Smith   PetscFunctionReturn(0);
827d7bf68aeSBarry Smith }
828d7bf68aeSBarry Smith 
829d7bf68aeSBarry Smith /*@
830bb7acecfSBarry Smith     DMSetFromOptions - sets parameters in a `DM` from the options database
831d7bf68aeSBarry Smith 
832d083f849SBarry Smith     Collective on dm
833d7bf68aeSBarry Smith 
834d7bf68aeSBarry Smith     Input Parameter:
835bb7acecfSBarry Smith .   dm - the `DM` object to set options for
836d7bf68aeSBarry Smith 
837732e2eb9SMatthew G Knepley     Options Database:
838bb7acecfSBarry Smith +   -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros
839bb7acecfSBarry Smith .   -dm_vec_type <type>  - type of vector to create inside `DM`
840bb7acecfSBarry Smith .   -dm_mat_type <type>  - type of matrix to create inside `DM`
841a4ea9b21SRichard Tran Mills .   -dm_is_coloring_type - <global or local>
842bb7acecfSBarry Smith -   -dm_bind_below <n>   - bind (force execution on CPU) for `Vec` and `Mat` objects with local size (number of vector entries or matrix rows) below n; currently only supported for `DMDA`
843732e2eb9SMatthew G Knepley 
8449318fe57SMatthew G. Knepley     DMPLEX Specific creation options
8459318fe57SMatthew G. Knepley + -dm_plex_filename <str>           - File containing a mesh
8469318fe57SMatthew G. Knepley . -dm_plex_boundary_filename <str>  - File containing a mesh boundary
847cd7e8a5eSksagiyam . -dm_plex_name <str>               - Name of the mesh in the file
848bb7acecfSBarry Smith . -dm_plex_shape <shape>            - The domain shape, such as `DM_SHAPE_BOX`, `DM_SHAPE_SPHERE`, etc.
8499318fe57SMatthew G. Knepley . -dm_plex_cell <ct>                - Cell shape
8509318fe57SMatthew G. Knepley . -dm_plex_reference_cell_domain <bool> - Use a reference cell domain
8519318fe57SMatthew G. Knepley . -dm_plex_dim <dim>                - Set the topological dimension
852bb7acecfSBarry Smith . -dm_plex_simplex <bool>           - `PETSC_TRUE` for simplex elements, `PETSC_FALSE` for tensor elements
853bb7acecfSBarry Smith . -dm_plex_interpolate <bool>       - `PETSC_TRUE` turns on topological interpolation (creating edges and faces)
8549318fe57SMatthew G. Knepley . -dm_plex_scale <sc>               - Scale factor for mesh coordinates
8559318fe57SMatthew G. Knepley . -dm_plex_box_faces <m,n,p>        - Number of faces along each dimension
8569318fe57SMatthew G. Knepley . -dm_plex_box_lower <x,y,z>        - Specify lower-left-bottom coordinates for the box
8579318fe57SMatthew G. Knepley . -dm_plex_box_upper <x,y,z>        - Specify upper-right-top coordinates for the box
858bb7acecfSBarry Smith . -dm_plex_box_bd <bx,by,bz>        - Specify the `DMBoundaryType `for each direction
8599318fe57SMatthew G. Knepley . -dm_plex_sphere_radius <r>        - The sphere radius
8609318fe57SMatthew G. Knepley . -dm_plex_ball_radius <r>          - Radius of the ball
8619318fe57SMatthew G. Knepley . -dm_plex_cylinder_bd <bz>         - Boundary type in the z direction
8629318fe57SMatthew G. Knepley . -dm_plex_cylinder_num_wedges <n>  - Number of wedges around the cylinder
863bdf63967SMatthew G. Knepley . -dm_plex_reorder <order>          - Reorder the mesh using the specified algorithm
8649318fe57SMatthew G. Knepley . -dm_refine_pre <n>                - The number of refinements before distribution
8659318fe57SMatthew G. Knepley . -dm_refine_uniform_pre <bool>     - Flag for uniform refinement before distribution
8669318fe57SMatthew G. Knepley . -dm_refine_volume_limit_pre <v>   - The maximum cell volume after refinement before distribution
8679318fe57SMatthew G. Knepley . -dm_refine <n>                    - The number of refinements after distribution
868bdf63967SMatthew G. Knepley . -dm_extrude <l>                   - Activate extrusion and specify the number of layers to extrude
869d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thickness <t>           - The total thickness of extruded layers
870d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_use_tensor <bool>       - Use tensor cells when extruding
871d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_symmetric <bool>        - Extrude layers symmetrically about the surface
872d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_normal <n0,...,nd>      - Specify the extrusion direction
873d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thicknesses <t0,...,tl> - Specify thickness of each layer
874909dfd52SMatthew G. Knepley . -dm_plex_create_fv_ghost_cells    - Flag to create finite volume ghost cells on the boundary
875909dfd52SMatthew G. Knepley . -dm_plex_fv_ghost_cells_label <name> - Label name for ghost cells boundary
8769318fe57SMatthew G. Knepley . -dm_distribute <bool>             - Flag to redistribute a mesh among processes
8779318fe57SMatthew G. Knepley . -dm_distribute_overlap <n>        - The size of the overlap halo
8789318fe57SMatthew G. Knepley . -dm_plex_adj_cone <bool>          - Set adjacency direction
8799318fe57SMatthew G. Knepley - -dm_plex_adj_closure <bool>       - Set adjacency size
8809318fe57SMatthew G. Knepley 
881384a6580SVaclav Hapla     DMPLEX Specific Checks
882bb7acecfSBarry Smith +   -dm_plex_check_symmetry        - Check that the adjacency information in the mesh is symmetric - `DMPlexCheckSymmetry()`
883bb7acecfSBarry Smith .   -dm_plex_check_skeleton        - Check that each cell has the correct number of vertices (only for homogeneous simplex or tensor meshes) - `DMPlexCheckSkeleton()`
884bb7acecfSBarry Smith .   -dm_plex_check_faces           - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type - `DMPlexCheckFaces()`
885bb7acecfSBarry Smith .   -dm_plex_check_geometry        - Check that cells have positive volume - `DMPlexCheckGeometry()`
886bb7acecfSBarry Smith .   -dm_plex_check_pointsf         - Check some necessary conditions for `PointSF` - `DMPlexCheckPointSF()`
887bb7acecfSBarry Smith .   -dm_plex_check_interface_cones - Check points on inter-partition interfaces have conforming order of cone points - `DMPlexCheckInterfaceCones()`
888384a6580SVaclav Hapla -   -dm_plex_check_all             - Perform all the checks above
889d7bf68aeSBarry Smith 
89095eb5ee5SVaclav Hapla     Level: intermediate
89195eb5ee5SVaclav Hapla 
892bb7acecfSBarry Smith .seealso: `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
893bb7acecfSBarry Smith          `DMPlexCheckSymmetry()`, `DMPlexCheckSkeleton()`, `DMPlexCheckFaces()`, `DMPlexCheckGeometry()`, `DMPlexCheckPointSF()`, `DMPlexCheckInterfaceCones()`,
894bb7acecfSBarry Smith          `DMSetOptionsPrefix()`, `DM`, `DMType`, `DMPLEX`, `DMDA`
895d7bf68aeSBarry Smith 
896d7bf68aeSBarry Smith @*/
897d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFromOptions(DM dm)
898d71ae5a4SJacob Faibussowitsch {
8997781c08eSBarry Smith   char      typeName[256];
900ca266f36SBarry Smith   PetscBool flg;
901d7bf68aeSBarry Smith 
902d7bf68aeSBarry Smith   PetscFunctionBegin;
903171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
90449be4549SMatthew G. Knepley   dm->setfromoptionscalled = PETSC_TRUE;
9059566063dSJacob Faibussowitsch   if (dm->sf) PetscCall(PetscSFSetFromOptions(dm->sf));
9069566063dSJacob Faibussowitsch   if (dm->sectionSF) PetscCall(PetscSFSetFromOptions(dm->sectionSF));
907*dd4c3f67SMatthew G. Knepley   if (dm->coordinates[0].dm) PetscCall(DMSetFromOptions(dm->coordinates[0].dm));
908d0609cedSBarry Smith   PetscObjectOptionsBegin((PetscObject)dm);
9099566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-dm_preallocate_only", "only preallocate matrix, but do not set column indices", "DMSetMatrixPreallocateOnly", dm->prealloc_only, &dm->prealloc_only, NULL));
9109566063dSJacob Faibussowitsch   PetscCall(PetscOptionsFList("-dm_vec_type", "Vector type used for created vectors", "DMSetVecType", VecList, dm->vectype, typeName, 256, &flg));
9111baa6e33SBarry Smith   if (flg) PetscCall(DMSetVecType(dm, typeName));
9129566063dSJacob Faibussowitsch   PetscCall(PetscOptionsFList("-dm_mat_type", "Matrix type used for created matrices", "DMSetMatType", MatList, dm->mattype ? dm->mattype : typeName, typeName, sizeof(typeName), &flg));
9131baa6e33SBarry Smith   if (flg) PetscCall(DMSetMatType(dm, typeName));
9149566063dSJacob Faibussowitsch   PetscCall(PetscOptionsEnum("-dm_is_coloring_type", "Global or local coloring of Jacobian", "DMSetISColoringType", ISColoringTypes, (PetscEnum)dm->coloringtype, (PetscEnum *)&dm->coloringtype, NULL));
9159566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt("-dm_bind_below", "Set the size threshold (in entries) below which the Vec is bound to the CPU", "VecBindToCPU", dm->bind_below, &dm->bind_below, &flg));
916dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, setfromoptions, PetscOptionsObject);
917f9ba7244SBarry Smith   /* process any options handlers added with PetscObjectAddOptionsHandler() */
918dbbe0bcdSBarry Smith   PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)dm, PetscOptionsObject));
919d0609cedSBarry Smith   PetscOptionsEnd();
920d7bf68aeSBarry Smith   PetscFunctionReturn(0);
921d7bf68aeSBarry Smith }
922d7bf68aeSBarry Smith 
923fc9bc008SSatish Balay /*@C
924bb7acecfSBarry Smith    DMViewFromOptions - View a `DM` in a particular way based on a request in the options database
925fe2efc57SMark 
926bb7acecfSBarry Smith    Collective on dm
927fe2efc57SMark 
928fe2efc57SMark    Input Parameters:
929bb7acecfSBarry Smith +  dm - the `DM` object
930bb7acecfSBarry Smith .  obj - optional object that provides the prefix for the options database (if NULL then the prefix in obj is used)
931bb7acecfSBarry Smith -  optionname - option string that is used to activate viewing
932fe2efc57SMark 
933fe2efc57SMark    Level: intermediate
934bb7acecfSBarry Smith 
935bb7acecfSBarry Smith    Note:
936bb7acecfSBarry Smith    See `PetscObjectViewFromOptions()` for a list of values that can be provided in the options database to determine how the `DM` is viewed
937bb7acecfSBarry Smith 
938bb7acecfSBarry Smith .seealso: `DM`, `DMView()`, `PetscObjectViewFromOptions()`, `DMCreate()`, `PetscObjectViewFromOptions()`
939fe2efc57SMark @*/
940d71ae5a4SJacob Faibussowitsch PetscErrorCode DMViewFromOptions(DM dm, PetscObject obj, const char name[])
941d71ae5a4SJacob Faibussowitsch {
942fe2efc57SMark   PetscFunctionBegin;
943fe2efc57SMark   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9449566063dSJacob Faibussowitsch   PetscCall(PetscObjectViewFromOptions((PetscObject)dm, obj, name));
945fe2efc57SMark   PetscFunctionReturn(0);
946fe2efc57SMark }
947fe2efc57SMark 
948fe2efc57SMark /*@C
949bb7acecfSBarry Smith     DMView - Views a `DM`. Depending on the `PetscViewer` and its `PetscViewerFormat` it may print some ASCII information about the `DM` to the screen or a file or
950bb7acecfSBarry Smith     save the `DM` in a binary file to be loaded later or create a visualization of the `DM`
95147c6ae99SBarry Smith 
952d083f849SBarry Smith     Collective on dm
95347c6ae99SBarry Smith 
954d8d19677SJose E. Roman     Input Parameters:
955bb7acecfSBarry Smith +   dm - the `DM` object to view
95647c6ae99SBarry Smith -   v - the viewer
95747c6ae99SBarry Smith 
958cd7e8a5eSksagiyam     Notes:
959bb7acecfSBarry Smith     Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` as the `PetscViewerFormat` one can save multiple `DMPLEX`
960bb7acecfSBarry Smith     meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()`
961bb7acecfSBarry Smith     before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object.
962cd7e8a5eSksagiyam 
963224748a4SBarry Smith     Level: beginner
96447c6ae99SBarry Smith 
965bb7acecfSBarry Smith .seealso: `PetscViewer`, `PetscViewerFormat`, `PetscViewerSetFormat`(), `DMDestroy()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMLoad()`, `PetscObjectSetName()`
96647c6ae99SBarry Smith 
96747c6ae99SBarry Smith @*/
968d71ae5a4SJacob Faibussowitsch PetscErrorCode DMView(DM dm, PetscViewer v)
969d71ae5a4SJacob Faibussowitsch {
97032c0f0efSBarry Smith   PetscBool         isbinary;
97176a8abe0SBarry Smith   PetscMPIInt       size;
97276a8abe0SBarry Smith   PetscViewerFormat format;
97347c6ae99SBarry Smith 
97447c6ae99SBarry Smith   PetscFunctionBegin;
975171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
97648a46eb9SPierre Jolivet   if (!v) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &v));
977b1b135c8SBarry Smith   PetscValidHeaderSpecific(v, PETSC_VIEWER_CLASSID, 2);
97874903a4fSStefano Zampini   /* Ideally, we would like to have this test on.
97974903a4fSStefano Zampini      However, it currently breaks socket viz via GLVis.
98074903a4fSStefano Zampini      During DMView(parallel_mesh,glvis_viewer), each
98174903a4fSStefano Zampini      process opens a sequential ASCII socket to visualize
98274903a4fSStefano Zampini      the local mesh, and PetscObjectView(dm,local_socket)
98374903a4fSStefano Zampini      is internally called inside VecView_GLVis, incurring
98474903a4fSStefano Zampini      in an error here */
98574903a4fSStefano Zampini   /* PetscCheckSameComm(dm,1,v,2); */
9869566063dSJacob Faibussowitsch   PetscCall(PetscViewerCheckWritable(v));
987b1b135c8SBarry Smith 
9889566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(v, &format));
9899566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
99076a8abe0SBarry Smith   if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(0);
9919566063dSJacob Faibussowitsch   PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)dm, v));
9929566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)v, PETSCVIEWERBINARY, &isbinary));
99332c0f0efSBarry Smith   if (isbinary) {
99455849f57SBarry Smith     PetscInt classid = DM_FILE_CLASSID;
99532c0f0efSBarry Smith     char     type[256];
99632c0f0efSBarry Smith 
9979566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryWrite(v, &classid, 1, PETSC_INT));
9989566063dSJacob Faibussowitsch     PetscCall(PetscStrncpy(type, ((PetscObject)dm)->type_name, 256));
9999566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryWrite(v, type, 256, PETSC_CHAR));
100032c0f0efSBarry Smith   }
1001dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, view, v);
100247c6ae99SBarry Smith   PetscFunctionReturn(0);
100347c6ae99SBarry Smith }
100447c6ae99SBarry Smith 
100547c6ae99SBarry Smith /*@
1006bb7acecfSBarry Smith     DMCreateGlobalVector - Creates a global vector from a `DM` object. A global vector is a parallel vector that has no duplicate values shared between MPI ranks,
1007bb7acecfSBarry Smith     that is it has no ghost locations.
100847c6ae99SBarry Smith 
1009d083f849SBarry Smith     Collective on dm
101047c6ae99SBarry Smith 
101147c6ae99SBarry Smith     Input Parameter:
1012bb7acecfSBarry Smith .   dm - the `DM` object
101347c6ae99SBarry Smith 
101447c6ae99SBarry Smith     Output Parameter:
101547c6ae99SBarry Smith .   vec - the global vector
101647c6ae99SBarry Smith 
1017073dac72SJed Brown     Level: beginner
101847c6ae99SBarry Smith 
1019bb7acecfSBarry Smith .seealso: `Vec`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
1020bb7acecfSBarry Smith          `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()`
102147c6ae99SBarry Smith 
102247c6ae99SBarry Smith @*/
1023d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateGlobalVector(DM dm, Vec *vec)
1024d71ae5a4SJacob Faibussowitsch {
102547c6ae99SBarry Smith   PetscFunctionBegin;
1026171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1027b9d85ea2SLisandro Dalcin   PetscValidPointer(vec, 2);
1028dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createglobalvector, vec);
102976bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1030c6b011d8SStefano Zampini     DM vdm;
1031c6b011d8SStefano Zampini 
10329566063dSJacob Faibussowitsch     PetscCall(VecGetDM(*vec, &vdm));
10337a8be351SBarry Smith     PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name);
1034c6b011d8SStefano Zampini   }
103547c6ae99SBarry Smith   PetscFunctionReturn(0);
103647c6ae99SBarry Smith }
103747c6ae99SBarry Smith 
103847c6ae99SBarry Smith /*@
1039bb7acecfSBarry Smith     DMCreateLocalVector - Creates a local vector from a `DM` object.
104047c6ae99SBarry Smith 
104147c6ae99SBarry Smith     Not Collective
104247c6ae99SBarry Smith 
104347c6ae99SBarry Smith     Input Parameter:
1044bb7acecfSBarry Smith .   dm - the `DM` object
104547c6ae99SBarry Smith 
104647c6ae99SBarry Smith     Output Parameter:
104747c6ae99SBarry Smith .   vec - the local vector
104847c6ae99SBarry Smith 
1049073dac72SJed Brown     Level: beginner
105047c6ae99SBarry Smith 
1051bb7acecfSBarry Smith     Notes:
1052bb7acecfSBarry Smith     A local vector usually has ghost locations that contain values that are owned by different MPI ranks. A global vector has no ghost locations.
1053bb7acecfSBarry Smith 
1054bb7acecfSBarry Smith  .seealso: `Vec`, `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
1055bb7acecfSBarry Smith          `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()`
105647c6ae99SBarry Smith 
105747c6ae99SBarry Smith @*/
1058d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLocalVector(DM dm, Vec *vec)
1059d71ae5a4SJacob Faibussowitsch {
106047c6ae99SBarry Smith   PetscFunctionBegin;
1061171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1062b9d85ea2SLisandro Dalcin   PetscValidPointer(vec, 2);
1063dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createlocalvector, vec);
106476bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1065c6b011d8SStefano Zampini     DM vdm;
1066c6b011d8SStefano Zampini 
10679566063dSJacob Faibussowitsch     PetscCall(VecGetDM(*vec, &vdm));
10687a8be351SBarry Smith     PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_LIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name);
1069c6b011d8SStefano Zampini   }
107047c6ae99SBarry Smith   PetscFunctionReturn(0);
107147c6ae99SBarry Smith }
107247c6ae99SBarry Smith 
10731411c6eeSJed Brown /*@
1074bb7acecfSBarry Smith    DMGetLocalToGlobalMapping - Accesses the local-to-global mapping in a `DM`.
10751411c6eeSJed Brown 
1076d083f849SBarry Smith    Collective on dm
10771411c6eeSJed Brown 
10781411c6eeSJed Brown    Input Parameter:
1079bb7acecfSBarry Smith .  dm - the `DM` that provides the mapping
10801411c6eeSJed Brown 
10811411c6eeSJed Brown    Output Parameter:
10821411c6eeSJed Brown .  ltog - the mapping
10831411c6eeSJed Brown 
1084bb7acecfSBarry Smith    Level: advanced
10851411c6eeSJed Brown 
10861411c6eeSJed Brown    Notes:
1087bb7acecfSBarry Smith    The global to local mapping allows one to set values into the global vector or matrix using `VecSetValuesLocal()` and `MatSetValuesLocal()`
10881411c6eeSJed Brown 
1089bb7acecfSBarry Smith    Vectors obtained with  `DMCreateGlobalVector()` and matrices obtained with `DMCreateMatrix()` already contain the global mapping so you do
1090bb7acecfSBarry Smith    need to use this function with those objects.
1091bb7acecfSBarry Smith 
1092bb7acecfSBarry Smith    This mapping can then be used by `VecSetLocalToGlobalMapping()` or `MatSetLocalToGlobalMapping()`.
1093bb7acecfSBarry Smith 
1094bb7acecfSBarry Smith .seealso: `DMCreateLocalVector()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `VecSetLocalToGlobalMapping()`, `MatSetLocalToGlobalMapping()`,
1095bb7acecfSBarry Smith           `DMCreateMatrix()`
10961411c6eeSJed Brown @*/
1097d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalToGlobalMapping(DM dm, ISLocalToGlobalMapping *ltog)
1098d71ae5a4SJacob Faibussowitsch {
10990be3e97aSMatthew G. Knepley   PetscInt bs = -1, bsLocal[2], bsMinMax[2];
11001411c6eeSJed Brown 
11011411c6eeSJed Brown   PetscFunctionBegin;
11021411c6eeSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11031411c6eeSJed Brown   PetscValidPointer(ltog, 2);
11041411c6eeSJed Brown   if (!dm->ltogmap) {
110537d0c07bSMatthew G Knepley     PetscSection section, sectionGlobal;
110637d0c07bSMatthew G Knepley 
11079566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
110837d0c07bSMatthew G Knepley     if (section) {
1109a974ec88SMatthew G. Knepley       const PetscInt *cdofs;
111037d0c07bSMatthew G Knepley       PetscInt       *ltog;
1111ccf3bd66SMatthew G. Knepley       PetscInt        pStart, pEnd, n, p, k, l;
111237d0c07bSMatthew G Knepley 
11139566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalSection(dm, &sectionGlobal));
11149566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
11159566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetStorageSize(section, &n));
11169566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &ltog)); /* We want the local+overlap size */
111737d0c07bSMatthew G Knepley       for (p = pStart, l = 0; p < pEnd; ++p) {
1118e6befd46SJed Brown         PetscInt bdof, cdof, dof, off, c, cind;
111937d0c07bSMatthew G Knepley 
112037d0c07bSMatthew G Knepley         /* Should probably use constrained dofs */
11219566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(section, p, &dof));
11229566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintDof(section, p, &cdof));
11239566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintIndices(section, p, &cdofs));
11249566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(sectionGlobal, p, &off));
11251a7dc684SMatthew G. Knepley         /* If you have dofs, and constraints, and they are unequal, we set the blocksize to 1 */
11261a7dc684SMatthew G. Knepley         bdof = cdof && (dof - cdof) ? 1 : dof;
1127ad540459SPierre Jolivet         if (dof) bs = bs < 0 ? bdof : PetscGCD(bs, bdof);
11285227eafbSStefano Zampini 
1129e6befd46SJed Brown         for (c = 0, cind = 0; c < dof; ++c, ++l) {
11305227eafbSStefano Zampini           if (cind < cdof && c == cdofs[cind]) {
1131e6befd46SJed Brown             ltog[l] = off < 0 ? off - c : -(off + c + 1);
1132e6befd46SJed Brown             cind++;
1133e6befd46SJed Brown           } else {
11345227eafbSStefano Zampini             ltog[l] = (off < 0 ? -(off + 1) : off) + c - cind;
1135e6befd46SJed Brown           }
113637d0c07bSMatthew G Knepley         }
113737d0c07bSMatthew G Knepley       }
1138bff27382SMatthew G. Knepley       /* Must have same blocksize on all procs (some might have no points) */
11399371c9d4SSatish Balay       bsLocal[0] = bs < 0 ? PETSC_MAX_INT : bs;
11409371c9d4SSatish Balay       bsLocal[1] = bs;
11419566063dSJacob Faibussowitsch       PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)dm), bsLocal, bsMinMax));
11429371c9d4SSatish Balay       if (bsMinMax[0] != bsMinMax[1]) {
11439371c9d4SSatish Balay         bs = 1;
11449371c9d4SSatish Balay       } else {
11459371c9d4SSatish Balay         bs = bsMinMax[0];
11469371c9d4SSatish Balay       }
11477591dbb2SMatthew G. Knepley       bs = bs < 0 ? 1 : bs;
11487591dbb2SMatthew G. Knepley       /* Must reduce indices by blocksize */
1149ccf3bd66SMatthew G. Knepley       if (bs > 1) {
1150ca469d19SJed Brown         for (l = 0, k = 0; l < n; l += bs, ++k) {
1151ca469d19SJed Brown           // Integer division of negative values truncates toward zero(!), not toward negative infinity
1152ca469d19SJed Brown           ltog[k] = ltog[l] >= 0 ? ltog[l] / bs : -(-(ltog[l] + 1) / bs + 1);
1153ca469d19SJed Brown         }
1154ccf3bd66SMatthew G. Knepley         n /= bs;
1155ccf3bd66SMatthew G. Knepley       }
11569566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm), bs, n, ltog, PETSC_OWN_POINTER, &dm->ltogmap));
1157dbbe0bcdSBarry Smith     } else PetscUseTypeMethod(dm, getlocaltoglobalmapping);
115837d0c07bSMatthew G Knepley   }
11591411c6eeSJed Brown   *ltog = dm->ltogmap;
11601411c6eeSJed Brown   PetscFunctionReturn(0);
11611411c6eeSJed Brown }
11621411c6eeSJed Brown 
11631411c6eeSJed Brown /*@
1164bb7acecfSBarry Smith    DMGetBlockSize - Gets the inherent block size associated with a `DM`
11651411c6eeSJed Brown 
11661411c6eeSJed Brown    Not Collective
11671411c6eeSJed Brown 
11681411c6eeSJed Brown    Input Parameter:
1169bb7acecfSBarry Smith .  dm - the `DM` with block structure
11701411c6eeSJed Brown 
11711411c6eeSJed Brown    Output Parameter:
11721411c6eeSJed Brown .  bs - the block size, 1 implies no exploitable block structure
11731411c6eeSJed Brown 
11741411c6eeSJed Brown    Level: intermediate
11751411c6eeSJed Brown 
1176bb7acecfSBarry Smith    Note:
1177bb7acecfSBarry Smith    This might be the number of degrees of freedom at each grid point for a structured grid.
1178bb7acecfSBarry Smith 
1179bb7acecfSBarry Smith    Complex `DM` that represent multiphysics or staggered grids or mixed-methods do not generally have a single inherent block size, but
1180bb7acecfSBarry Smith    rather different locations in the vectors may have a different block size.
1181bb7acecfSBarry Smith 
1182db781477SPatrick Sanan .seealso: `ISCreateBlock()`, `VecSetBlockSize()`, `MatSetBlockSize()`, `DMGetLocalToGlobalMapping()`
11831411c6eeSJed Brown @*/
1184d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBlockSize(DM dm, PetscInt *bs)
1185d71ae5a4SJacob Faibussowitsch {
11861411c6eeSJed Brown   PetscFunctionBegin;
11871411c6eeSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1188534a8f05SLisandro Dalcin   PetscValidIntPointer(bs, 2);
11897a8be351SBarry Smith   PetscCheck(dm->bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM does not have enough information to provide a block size yet");
11901411c6eeSJed Brown   *bs = dm->bs;
11911411c6eeSJed Brown   PetscFunctionReturn(0);
11921411c6eeSJed Brown }
11931411c6eeSJed Brown 
119448eeb7c8SBarry Smith /*@C
1195bb7acecfSBarry Smith     DMCreateInterpolation - Gets the interpolation matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by
1196bb7acecfSBarry Smith     `DMCreateGlobalVector()` on the coarse `DM` to similar vectors on the fine grid `DM`.
119747c6ae99SBarry Smith 
1198a5bc1bf3SBarry Smith     Collective on dmc
119947c6ae99SBarry Smith 
1200d8d19677SJose E. Roman     Input Parameters:
1201bb7acecfSBarry Smith +   dmc - the `DM` object
1202bb7acecfSBarry Smith -   dmf - the second, finer `DM` object
120347c6ae99SBarry Smith 
1204d8d19677SJose E. Roman     Output Parameters:
120547c6ae99SBarry Smith +  mat - the interpolation
1206bb7acecfSBarry Smith -  vec - the scaling (optional), see `DMCreateInterpolationScale()`
120747c6ae99SBarry Smith 
120847c6ae99SBarry Smith     Level: developer
120947c6ae99SBarry Smith 
121095452b02SPatrick Sanan     Notes:
1211bb7acecfSBarry Smith     For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by
1212bb7acecfSBarry Smith     DMCoarsen(). The coordinates set into the `DMDA` are completely ignored in computing the interpolation.
1213d52bd9f3SBarry Smith 
1214bb7acecfSBarry Smith     For `DMDA` objects you can use this interpolation (more precisely the interpolation from the `DMGetCoordinateDM()`) to interpolate the mesh coordinate
1215bb7acecfSBarry Smith     vectors EXCEPT in the periodic case where it does not make sense since the coordinate vectors are not periodic.
121685afcc9aSBarry Smith 
1217bb7acecfSBarry Smith .seealso: `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolationScale()`
121847c6ae99SBarry Smith 
121947c6ae99SBarry Smith @*/
1220d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolation(DM dmc, DM dmf, Mat *mat, Vec *vec)
1221d71ae5a4SJacob Faibussowitsch {
122247c6ae99SBarry Smith   PetscFunctionBegin;
1223a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
1224a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
1225c7d20fa0SStefano Zampini   PetscValidPointer(mat, 3);
12269566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateInterpolation, dmc, dmf, 0, 0));
1227dbbe0bcdSBarry Smith   PetscUseTypeMethod(dmc, createinterpolation, dmf, mat, vec);
12289566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateInterpolation, dmc, dmf, 0, 0));
122947c6ae99SBarry Smith   PetscFunctionReturn(0);
123047c6ae99SBarry Smith }
123147c6ae99SBarry Smith 
12323ad4599aSBarry Smith /*@
1233bb7acecfSBarry Smith     DMCreateInterpolationScale - Forms L = 1/(R*1) where 1 is the vector of all ones, and R is the transpose of the interpolation between the `DM`.
1234bb7acecfSBarry Smith     xcoarse = diag(L)*R*xfine preserves scale and is thus suitable for state (versus residual) restriction. In other words xcoarse is the coarse
1235bb7acecfSBarry Smith     representation of xfine.
12362ed6491fSPatrick Sanan 
12372ed6491fSPatrick Sanan   Input Parameters:
1238bb7acecfSBarry Smith +      dac - `DM` that defines a coarse mesh
1239bb7acecfSBarry Smith .      daf - `DM` that defines a fine mesh
12402ed6491fSPatrick Sanan -      mat - the restriction (or interpolation operator) from fine to coarse
12412ed6491fSPatrick Sanan 
12422ed6491fSPatrick Sanan   Output Parameter:
12432ed6491fSPatrick Sanan .    scale - the scaled vector
12442ed6491fSPatrick Sanan 
1245bb7acecfSBarry Smith   Level: advanced
12462ed6491fSPatrick Sanan 
1247e9c74fd6SRichard Tran Mills   Developer Notes:
1248bb7acecfSBarry Smith   If the fine-scale `DMDA` has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()`
1249e9c74fd6SRichard Tran Mills   on the restriction/interpolation operator to set the bindingpropagates flag to true.
1250e9c74fd6SRichard Tran Mills 
1251bb7acecfSBarry Smith .seealso: `MatRestrict()`, `MatInterpolate()`, `DMCreateInterpolation()`, DMCreateRestriction()`, `DMCreateGlobalVector()`
12522ed6491fSPatrick Sanan 
12532ed6491fSPatrick Sanan @*/
1254d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolationScale(DM dac, DM daf, Mat mat, Vec *scale)
1255d71ae5a4SJacob Faibussowitsch {
12562ed6491fSPatrick Sanan   Vec         fine;
12572ed6491fSPatrick Sanan   PetscScalar one = 1.0;
12589704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA)
1259e9c74fd6SRichard Tran Mills   PetscBool bindingpropagates, isbound;
12609704db99SRichard Tran Mills #endif
12612ed6491fSPatrick Sanan 
12622ed6491fSPatrick Sanan   PetscFunctionBegin;
12639566063dSJacob Faibussowitsch   PetscCall(DMCreateGlobalVector(daf, &fine));
12649566063dSJacob Faibussowitsch   PetscCall(DMCreateGlobalVector(dac, scale));
12659566063dSJacob Faibussowitsch   PetscCall(VecSet(fine, one));
12669704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA)
12679704db99SRichard Tran Mills   /* If the 'fine' Vec is bound to the CPU, it makes sense to bind 'mat' as well.
12689704db99SRichard Tran Mills    * Note that we only do this for the CUDA case, right now, but if we add support for MatMultTranspose() via ViennaCL,
12699704db99SRichard Tran Mills    * we'll need to do it for that case, too.*/
12709566063dSJacob Faibussowitsch   PetscCall(VecGetBindingPropagates(fine, &bindingpropagates));
1271e9c74fd6SRichard Tran Mills   if (bindingpropagates) {
12729566063dSJacob Faibussowitsch     PetscCall(MatSetBindingPropagates(mat, PETSC_TRUE));
12739566063dSJacob Faibussowitsch     PetscCall(VecBoundToCPU(fine, &isbound));
12749566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(mat, isbound));
127583aa49f4SRichard Tran Mills   }
12769704db99SRichard Tran Mills #endif
12779566063dSJacob Faibussowitsch   PetscCall(MatRestrict(mat, fine, *scale));
12789566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&fine));
12799566063dSJacob Faibussowitsch   PetscCall(VecReciprocal(*scale));
12802ed6491fSPatrick Sanan   PetscFunctionReturn(0);
12812ed6491fSPatrick Sanan }
12822ed6491fSPatrick Sanan 
12832ed6491fSPatrick Sanan /*@
1284bb7acecfSBarry Smith     DMCreateRestriction - Gets restriction matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by
1285bb7acecfSBarry Smith     `DMCreateGlobalVector()` on the fine `DM` to similar vectors on the coarse grid `DM`.
12863ad4599aSBarry Smith 
1287a5bc1bf3SBarry Smith     Collective on dmc
12883ad4599aSBarry Smith 
1289d8d19677SJose E. Roman     Input Parameters:
1290bb7acecfSBarry Smith +   dmc - the `DM` object
1291bb7acecfSBarry Smith -   dmf - the second, finer `DM` object
12923ad4599aSBarry Smith 
12933ad4599aSBarry Smith     Output Parameter:
12943ad4599aSBarry Smith .  mat - the restriction
12953ad4599aSBarry Smith 
12963ad4599aSBarry Smith     Level: developer
12973ad4599aSBarry Smith 
1298bb7acecfSBarry Smith     Note:
1299bb7acecfSBarry Smith     This only works for `DMSTAG`. For many situations either the transpose of the operator obtained with `DMCreateInterpolation()` or that
1300bb7acecfSBarry Smith     matrix multiplied by the vector obtained with `DMCreateInterpolationScale()` provides the desired object.
13013ad4599aSBarry Smith 
1302bb7acecfSBarry Smith .seealso: `DMRestrict()`, `DMInterpolate()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateInterpolation()`
13033ad4599aSBarry Smith 
13043ad4599aSBarry Smith @*/
1305d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateRestriction(DM dmc, DM dmf, Mat *mat)
1306d71ae5a4SJacob Faibussowitsch {
13073ad4599aSBarry Smith   PetscFunctionBegin;
1308a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
1309a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
13105a84ad33SLisandro Dalcin   PetscValidPointer(mat, 3);
13119566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateRestriction, dmc, dmf, 0, 0));
1312dbbe0bcdSBarry Smith   PetscUseTypeMethod(dmc, createrestriction, dmf, mat);
13139566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateRestriction, dmc, dmf, 0, 0));
13143ad4599aSBarry Smith   PetscFunctionReturn(0);
13153ad4599aSBarry Smith }
13163ad4599aSBarry Smith 
131747c6ae99SBarry Smith /*@
1318bb7acecfSBarry Smith     DMCreateInjection - Gets injection matrix between two `DM` objects. This is an operator that applied to a vector obtained with
1319bb7acecfSBarry Smith     `DMCreateGlobalVector()` on the fine grid maps the values to a vector on the vector on the coarse `DM` by simply selecting the values
1320bb7acecfSBarry Smith     on the coarse grid points. This compares to the operator obtained by `DMCreateRestriction()` or the transpose of the operator obtained
1321bb7acecfSBarry Smith     by `DMCreateInterpolation()` that uses a "local weighted average" of the values around the coarse grid point as the coarse grid value.
132247c6ae99SBarry Smith 
1323a5bc1bf3SBarry Smith     Collective on dac
132447c6ae99SBarry Smith 
1325d8d19677SJose E. Roman     Input Parameters:
1326bb7acecfSBarry Smith +   dac - the `DM` object
1327bb7acecfSBarry Smith -   daf - the second, finer `DM` object
132847c6ae99SBarry Smith 
132947c6ae99SBarry Smith     Output Parameter:
13306dbf9973SLawrence Mitchell .   mat - the injection
133147c6ae99SBarry Smith 
133247c6ae99SBarry Smith     Level: developer
133347c6ae99SBarry Smith 
1334bb7acecfSBarry Smith    Note:
1335bb7acecfSBarry Smith     For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by
1336bb7acecfSBarry Smith         `DMCoarsen()`. The coordinates set into the `DMDA` are completely ignored in computing the injection.
133785afcc9aSBarry Smith 
1338bb7acecfSBarry Smith .seealso: `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateInterpolation()`,
1339bb7acecfSBarry Smith           `DMCreateRestriction()`, `MatRestrict()`, `MatInterpolate()`
134047c6ae99SBarry Smith 
134147c6ae99SBarry Smith @*/
1342d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInjection(DM dac, DM daf, Mat *mat)
1343d71ae5a4SJacob Faibussowitsch {
134447c6ae99SBarry Smith   PetscFunctionBegin;
1345a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dac, DM_CLASSID, 1);
1346a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(daf, DM_CLASSID, 2);
13475a84ad33SLisandro Dalcin   PetscValidPointer(mat, 3);
13489566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateInjection, dac, daf, 0, 0));
1349dbbe0bcdSBarry Smith   PetscUseTypeMethod(dac, createinjection, daf, mat);
13509566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateInjection, dac, daf, 0, 0));
135147c6ae99SBarry Smith   PetscFunctionReturn(0);
135247c6ae99SBarry Smith }
135347c6ae99SBarry Smith 
1354b412c318SBarry Smith /*@
1355bb7acecfSBarry Smith   DMCreateMassMatrix - Gets the mass matrix between two `DM` objects, M_ij = \int \phi_i \psi_j where the \phi are Galerkin basis functions for a
1356bb7acecfSBarry Smith   a Galerkin finite element model on the `DM`
1357bd041c0cSMatthew G. Knepley 
1358a5bc1bf3SBarry Smith   Collective on dac
1359bd041c0cSMatthew G. Knepley 
1360d8d19677SJose E. Roman   Input Parameters:
1361bb7acecfSBarry Smith + dmc - the target `DM` object
1362bb7acecfSBarry Smith - dmf - the source `DM` object
1363bd041c0cSMatthew G. Knepley 
1364bd041c0cSMatthew G. Knepley   Output Parameter:
1365b4937a87SMatthew G. Knepley . mat - the mass matrix
1366bd041c0cSMatthew G. Knepley 
1367bd041c0cSMatthew G. Knepley   Level: developer
1368bd041c0cSMatthew G. Knepley 
1369bb7acecfSBarry Smith   Notes:
1370bb7acecfSBarry Smith   For `DMPLEX` the finite element model for the `DM` must have been already provided.
1371bb7acecfSBarry Smith 
1372bb7acecfSBarry Smith   if dmc is dmf then x^t M x is an approximation to the L2 norm of the vector x which is obtained by `DMCreateGlobalVector()`
1373bb7acecfSBarry Smith 
1374bb7acecfSBarry Smith .seealso: `DMCreateMassMatrixLumped()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()`
1375bd041c0cSMatthew G. Knepley @*/
1376d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrix(DM dmc, DM dmf, Mat *mat)
1377d71ae5a4SJacob Faibussowitsch {
1378bd041c0cSMatthew G. Knepley   PetscFunctionBegin;
1379b4937a87SMatthew G. Knepley   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
1380b4937a87SMatthew G. Knepley   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
13815a84ad33SLisandro Dalcin   PetscValidPointer(mat, 3);
13825b8ffe73SMark Adams   PetscCall(PetscLogEventBegin(DM_CreateMassMatrix, 0, 0, 0, 0));
1383dbbe0bcdSBarry Smith   PetscUseTypeMethod(dmc, createmassmatrix, dmf, mat);
13845b8ffe73SMark Adams   PetscCall(PetscLogEventEnd(DM_CreateMassMatrix, 0, 0, 0, 0));
1385b4937a87SMatthew G. Knepley   PetscFunctionReturn(0);
1386b4937a87SMatthew G. Knepley }
1387b4937a87SMatthew G. Knepley 
1388b4937a87SMatthew G. Knepley /*@
1389bb7acecfSBarry Smith   DMCreateMassMatrixLumped - Gets the lumped mass matrix for a given `DM`
1390b4937a87SMatthew G. Knepley 
1391b4937a87SMatthew G. Knepley   Collective on dm
1392b4937a87SMatthew G. Knepley 
1393b4937a87SMatthew G. Knepley   Input Parameter:
1394bb7acecfSBarry Smith . dm - the `DM` object
1395b4937a87SMatthew G. Knepley 
1396b4937a87SMatthew G. Knepley   Output Parameter:
1397bb7acecfSBarry Smith . lm - the lumped mass matrix, which is a diagonal matrix, represented as a vector
1398b4937a87SMatthew G. Knepley 
1399b4937a87SMatthew G. Knepley   Level: developer
1400b4937a87SMatthew G. Knepley 
1401bb7acecfSBarry Smith   Note:
1402bb7acecfSBarry Smith   See `DMCreateMassMatrix()` for how to create the non-lumped version of the mass matrix.
1403bb7acecfSBarry Smith 
1404bb7acecfSBarry Smith .seealso: `DMCreateMassMatrix()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()`
1405b4937a87SMatthew G. Knepley @*/
1406d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrixLumped(DM dm, Vec *lm)
1407d71ae5a4SJacob Faibussowitsch {
1408b4937a87SMatthew G. Knepley   PetscFunctionBegin;
1409b4937a87SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1410b4937a87SMatthew G. Knepley   PetscValidPointer(lm, 2);
1411dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createmassmatrixlumped, lm);
1412bd041c0cSMatthew G. Knepley   PetscFunctionReturn(0);
1413bd041c0cSMatthew G. Knepley }
1414bd041c0cSMatthew G. Knepley 
1415bd041c0cSMatthew G. Knepley /*@
1416bb7acecfSBarry Smith     DMCreateColoring - Gets coloring of a graph associated with the `DM`. Often the graph represents the operator matrix associated with the discretization
1417bb7acecfSBarry Smith     of a PDE on the `DM`.
141847c6ae99SBarry Smith 
1419d083f849SBarry Smith     Collective on dm
142047c6ae99SBarry Smith 
1421d8d19677SJose E. Roman     Input Parameters:
1422bb7acecfSBarry Smith +   dm - the `DM` object
1423bb7acecfSBarry Smith -   ctype - `IS_COLORING_LOCAL` or `IS_COLORING_GLOBAL`
142447c6ae99SBarry Smith 
142547c6ae99SBarry Smith     Output Parameter:
142647c6ae99SBarry Smith .   coloring - the coloring
142747c6ae99SBarry Smith 
1428ec5066bdSBarry Smith     Notes:
1429bb7acecfSBarry Smith     Coloring of matrices can also be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
1430bb7acecfSBarry Smith     matrix comes from (what this function provides). In general using the mesh produces a more optimal coloring (fewer colors).
1431ec5066bdSBarry Smith 
1432bb7acecfSBarry Smith     This produces a coloring with the distance of 2, see `MatSetColoringDistance()` which can be used for efficiently computing Jacobians with `MatFDColoringCreate()`
1433ec5066bdSBarry Smith 
143447c6ae99SBarry Smith     Level: developer
143547c6ae99SBarry Smith 
1436bb7acecfSBarry Smith .seealso: `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatType()`, `MatColoring`, `MatFDColoringCreate()`
143747c6ae99SBarry Smith 
1438aab9d709SJed Brown @*/
1439d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateColoring(DM dm, ISColoringType ctype, ISColoring *coloring)
1440d71ae5a4SJacob Faibussowitsch {
144147c6ae99SBarry Smith   PetscFunctionBegin;
1442171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14435a84ad33SLisandro Dalcin   PetscValidPointer(coloring, 3);
1444dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, getcoloring, ctype, coloring);
144547c6ae99SBarry Smith   PetscFunctionReturn(0);
144647c6ae99SBarry Smith }
144747c6ae99SBarry Smith 
1448b412c318SBarry Smith /*@
1449bb7acecfSBarry Smith     DMCreateMatrix - Gets an empty matrix for a `DM` that is most commonly used to store the Jacobian of a discrete PDE operator.
145047c6ae99SBarry Smith 
1451d083f849SBarry Smith     Collective on dm
145247c6ae99SBarry Smith 
145347c6ae99SBarry Smith     Input Parameter:
1454bb7acecfSBarry Smith .   dm - the `DM` object
145547c6ae99SBarry Smith 
145647c6ae99SBarry Smith     Output Parameter:
145747c6ae99SBarry Smith .   mat - the empty Jacobian
145847c6ae99SBarry Smith 
1459073dac72SJed Brown     Level: beginner
146047c6ae99SBarry Smith 
1461f27dd7c6SMatthew G. Knepley     Options Database Keys:
1462bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros
1463f27dd7c6SMatthew G. Knepley 
146495452b02SPatrick Sanan     Notes:
146595452b02SPatrick Sanan     This properly preallocates the number of nonzeros in the sparse matrix so you
146694013140SBarry Smith     do not need to do it yourself.
146794013140SBarry Smith 
146894013140SBarry Smith     By default it also sets the nonzero structure and puts in the zero entries. To prevent setting
1469bb7acecfSBarry Smith     the nonzero pattern call `DMSetMatrixPreallocateOnly()`
147094013140SBarry Smith 
1471bb7acecfSBarry Smith     For `DMDA`, when you call `MatView()` on this matrix it is displayed using the global natural ordering, NOT in the ordering used
147294013140SBarry Smith     internally by PETSc.
147394013140SBarry Smith 
1474bb7acecfSBarry Smith     For `DMDA`, in general it is easiest to use `MatSetValuesStencil()` or `MatSetValuesLocal()` to put values into the matrix because
1475bb7acecfSBarry Smith     `MatSetValues()` requires the indices for the global numbering for the `DMDA` which is complic`ated to compute
147694013140SBarry Smith 
1477bb7acecfSBarry Smith .seealso: `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMSetMatType()`, `DMCreateMassMatrix()`
147847c6ae99SBarry Smith 
1479aab9d709SJed Brown @*/
1480d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMatrix(DM dm, Mat *mat)
1481d71ae5a4SJacob Faibussowitsch {
148247c6ae99SBarry Smith   PetscFunctionBegin;
1483171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1484064a246eSJacob Faibussowitsch   PetscValidPointer(mat, 2);
14859566063dSJacob Faibussowitsch   PetscCall(MatInitializePackage());
14869566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateMatrix, 0, 0, 0, 0));
1487dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, creatematrix, mat);
148876bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1489c6b011d8SStefano Zampini     DM mdm;
1490c6b011d8SStefano Zampini 
14919566063dSJacob Faibussowitsch     PetscCall(MatGetDM(*mat, &mdm));
14927a8be351SBarry Smith     PetscCheck(mdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the matrix", ((PetscObject)dm)->type_name);
1493c6b011d8SStefano Zampini   }
1494e571a35bSMatthew G. Knepley   /* Handle nullspace and near nullspace */
1495e5e52638SMatthew G. Knepley   if (dm->Nf) {
1496e571a35bSMatthew G. Knepley     MatNullSpace nullSpace;
1497649ef022SMatthew Knepley     PetscInt     Nf, f;
1498e571a35bSMatthew G. Knepley 
14999566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
1500649ef022SMatthew Knepley     for (f = 0; f < Nf; ++f) {
1501649ef022SMatthew Knepley       if (dm->nullspaceConstructors[f]) {
15029566063dSJacob Faibussowitsch         PetscCall((*dm->nullspaceConstructors[f])(dm, f, f, &nullSpace));
15039566063dSJacob Faibussowitsch         PetscCall(MatSetNullSpace(*mat, nullSpace));
15049566063dSJacob Faibussowitsch         PetscCall(MatNullSpaceDestroy(&nullSpace));
1505649ef022SMatthew Knepley         break;
1506e571a35bSMatthew G. Knepley       }
1507649ef022SMatthew Knepley     }
1508649ef022SMatthew Knepley     for (f = 0; f < Nf; ++f) {
1509649ef022SMatthew Knepley       if (dm->nearnullspaceConstructors[f]) {
15109566063dSJacob Faibussowitsch         PetscCall((*dm->nearnullspaceConstructors[f])(dm, f, f, &nullSpace));
15119566063dSJacob Faibussowitsch         PetscCall(MatSetNearNullSpace(*mat, nullSpace));
15129566063dSJacob Faibussowitsch         PetscCall(MatNullSpaceDestroy(&nullSpace));
1513e571a35bSMatthew G. Knepley       }
1514e571a35bSMatthew G. Knepley     }
1515e571a35bSMatthew G. Knepley   }
15169566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateMatrix, 0, 0, 0, 0));
151747c6ae99SBarry Smith   PetscFunctionReturn(0);
151847c6ae99SBarry Smith }
151947c6ae99SBarry Smith 
1520732e2eb9SMatthew G Knepley /*@
1521bb7acecfSBarry Smith   DMSetMatrixPreallocateSkip - When `DMCreateMatrix()` is called the matrix sizes and `ISLocalToGlobalMapping` will be
1522bb7acecfSBarry Smith   properly set, but the data structures to store values in the matrices will not be preallocated. This is most useful to reduce initialization costs when
1523bb7acecfSBarry Smith   `MatSetPreallocationCOO()` and `MatSetValuesCOO()` will be used.
1524aa0f6e3cSJed Brown 
1525aa0f6e3cSJed Brown   Logically Collective on dm
1526aa0f6e3cSJed Brown 
1527aa0f6e3cSJed Brown   Input Parameters:
1528bb7acecfSBarry Smith + dm - the `DM`
1529bb7acecfSBarry Smith - skip - `PETSC_TRUE` to skip preallocation
1530aa0f6e3cSJed Brown 
1531aa0f6e3cSJed Brown   Level: developer
1532aa0f6e3cSJed Brown 
1533bb7acecfSBarry Smith .seealso: `DMCreateMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateOnly()`
1534aa0f6e3cSJed Brown @*/
1535d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateSkip(DM dm, PetscBool skip)
1536d71ae5a4SJacob Faibussowitsch {
1537aa0f6e3cSJed Brown   PetscFunctionBegin;
1538aa0f6e3cSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1539aa0f6e3cSJed Brown   dm->prealloc_skip = skip;
1540aa0f6e3cSJed Brown   PetscFunctionReturn(0);
1541aa0f6e3cSJed Brown }
1542aa0f6e3cSJed Brown 
1543aa0f6e3cSJed Brown /*@
1544bb7acecfSBarry Smith   DMSetMatrixPreallocateOnly - When `DMCreateMatrix()` is called the matrix will be properly
1545732e2eb9SMatthew G Knepley     preallocated but the nonzero structure and zero values will not be set.
1546732e2eb9SMatthew G Knepley 
1547d083f849SBarry Smith   Logically Collective on dm
1548732e2eb9SMatthew G Knepley 
1549d8d19677SJose E. Roman   Input Parameters:
1550bb7acecfSBarry Smith + dm - the `DM`
1551bb7acecfSBarry Smith - only - `PETSC_TRUE` if only want preallocation
1552732e2eb9SMatthew G Knepley 
1553732e2eb9SMatthew G Knepley   Level: developer
1554f27dd7c6SMatthew G. Knepley 
1555f27dd7c6SMatthew G. Knepley   Options Database Keys:
1556bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()`, `DMCreateMassMatrix()`, but do not fill it with zeros
1557f27dd7c6SMatthew G. Knepley 
1558bb7acecfSBarry Smith .seealso: `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateSkip()`
1559732e2eb9SMatthew G Knepley @*/
1560d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateOnly(DM dm, PetscBool only)
1561d71ae5a4SJacob Faibussowitsch {
1562732e2eb9SMatthew G Knepley   PetscFunctionBegin;
1563732e2eb9SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1564732e2eb9SMatthew G Knepley   dm->prealloc_only = only;
1565732e2eb9SMatthew G Knepley   PetscFunctionReturn(0);
1566732e2eb9SMatthew G Knepley }
1567732e2eb9SMatthew G Knepley 
1568b06ff27eSHong Zhang /*@
1569bb7acecfSBarry Smith   DMSetMatrixStructureOnly - When `DMCreateMatrix()` is called, the matrix structure will be created
1570bb7acecfSBarry Smith     but the array for numerical values will not be allocated.
1571b06ff27eSHong Zhang 
1572d083f849SBarry Smith   Logically Collective on dm
1573b06ff27eSHong Zhang 
1574d8d19677SJose E. Roman   Input Parameters:
1575bb7acecfSBarry Smith + dm - the `DM`
1576bb7acecfSBarry Smith - only - `PETSC_TRUE` if you only want matrix stucture
1577b06ff27eSHong Zhang 
1578b06ff27eSHong Zhang   Level: developer
1579bb7acecfSBarry Smith 
1580bb7acecfSBarry Smith .seealso: `DMCreateMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMSetMatrixPreallocateSkip()`
1581b06ff27eSHong Zhang @*/
1582d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixStructureOnly(DM dm, PetscBool only)
1583d71ae5a4SJacob Faibussowitsch {
1584b06ff27eSHong Zhang   PetscFunctionBegin;
1585b06ff27eSHong Zhang   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1586b06ff27eSHong Zhang   dm->structure_only = only;
1587b06ff27eSHong Zhang   PetscFunctionReturn(0);
1588b06ff27eSHong Zhang }
1589b06ff27eSHong Zhang 
1590a89ea682SMatthew G Knepley /*@C
1591bb7acecfSBarry Smith   DMGetWorkArray - Gets a work array guaranteed to be at least the input size, restore with `DMRestoreWorkArray()`
1592a89ea682SMatthew G Knepley 
1593a89ea682SMatthew G Knepley   Not Collective
1594a89ea682SMatthew G Knepley 
1595a89ea682SMatthew G Knepley   Input Parameters:
1596bb7acecfSBarry Smith + dm - the `DM` object
1597a5b23f4aSJose E. Roman . count - The minimum size
1598bb7acecfSBarry Smith - dtype - MPI data type, often MPIU_REAL, MPIU_SCALAR, or MPIU_INT)
1599a89ea682SMatthew G Knepley 
1600a89ea682SMatthew G Knepley   Output Parameter:
1601a89ea682SMatthew G Knepley . array - the work array
1602a89ea682SMatthew G Knepley 
1603a89ea682SMatthew G Knepley   Level: developer
1604a89ea682SMatthew G Knepley 
1605bb7acecfSBarry Smith   Note:
1606bb7acecfSBarry Smith   A `DM` may stash the array between instantations so using this routine may be more efficient than calling `PetscMalloc()`
1607bb7acecfSBarry Smith 
1608bb7acecfSBarry Smith   The array may contain nonzero values
1609bb7acecfSBarry Smith 
1610bb7acecfSBarry Smith .seealso: `DMDestroy()`, `DMCreate()`, `DMRestoreWorkArray()`, `PetscMalloc()`
1611a89ea682SMatthew G Knepley @*/
1612d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem)
1613d71ae5a4SJacob Faibussowitsch {
1614aa1993deSMatthew G Knepley   DMWorkLink  link;
161569291d52SBarry Smith   PetscMPIInt dsize;
1616a89ea682SMatthew G Knepley 
1617a89ea682SMatthew G Knepley   PetscFunctionBegin;
1618a89ea682SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1619aa1993deSMatthew G Knepley   PetscValidPointer(mem, 4);
1620aa1993deSMatthew G Knepley   if (dm->workin) {
1621aa1993deSMatthew G Knepley     link       = dm->workin;
1622aa1993deSMatthew G Knepley     dm->workin = dm->workin->next;
1623aa1993deSMatthew G Knepley   } else {
16244dfa11a4SJacob Faibussowitsch     PetscCall(PetscNew(&link));
1625a89ea682SMatthew G Knepley   }
16269566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_size(dtype, &dsize));
16275056fcd2SBarry Smith   if (((size_t)dsize * count) > link->bytes) {
16289566063dSJacob Faibussowitsch     PetscCall(PetscFree(link->mem));
16299566063dSJacob Faibussowitsch     PetscCall(PetscMalloc(dsize * count, &link->mem));
1630854ce69bSBarry Smith     link->bytes = dsize * count;
1631aa1993deSMatthew G Knepley   }
1632aa1993deSMatthew G Knepley   link->next  = dm->workout;
1633aa1993deSMatthew G Knepley   dm->workout = link;
1634cea3dcb8SSatish Balay #if defined(__MEMCHECK_H) && (defined(PLAT_amd64_linux) || defined(PLAT_x86_linux) || defined(PLAT_amd64_darwin))
163500d952a4SJed Brown   VALGRIND_MAKE_MEM_NOACCESS((char *)link->mem + (size_t)dsize * count, link->bytes - (size_t)dsize * count);
163600d952a4SJed Brown   VALGRIND_MAKE_MEM_UNDEFINED(link->mem, (size_t)dsize * count);
163700d952a4SJed Brown #endif
1638aa1993deSMatthew G Knepley   *(void **)mem = link->mem;
1639a89ea682SMatthew G Knepley   PetscFunctionReturn(0);
1640a89ea682SMatthew G Knepley }
1641a89ea682SMatthew G Knepley 
1642aa1993deSMatthew G Knepley /*@C
1643bb7acecfSBarry Smith   DMRestoreWorkArray - Restores a work array obtained with `DMCreateWorkArray()`
1644aa1993deSMatthew G Knepley 
1645aa1993deSMatthew G Knepley   Not Collective
1646aa1993deSMatthew G Knepley 
1647aa1993deSMatthew G Knepley   Input Parameters:
1648bb7acecfSBarry Smith + dm - the `DM` object
1649a5b23f4aSJose E. Roman . count - The minimum size
165069291d52SBarry Smith - dtype - MPI data type, often MPIU_REAL, MPIU_SCALAR, MPIU_INT
1651aa1993deSMatthew G Knepley 
1652aa1993deSMatthew G Knepley   Output Parameter:
1653aa1993deSMatthew G Knepley . array - the work array
1654aa1993deSMatthew G Knepley 
1655aa1993deSMatthew G Knepley   Level: developer
1656aa1993deSMatthew G Knepley 
165795452b02SPatrick Sanan   Developer Notes:
1658bb7acecfSBarry Smith   count and dtype are ignored, they are only needed for `DMGetWorkArray()`
1659147403d9SBarry Smith 
1660bb7acecfSBarry Smith .seealso: `DMDestroy()`, `DMCreate()`, `DMGetWorkArray()`
1661aa1993deSMatthew G Knepley @*/
1662d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestoreWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem)
1663d71ae5a4SJacob Faibussowitsch {
1664aa1993deSMatthew G Knepley   DMWorkLink *p, link;
1665aa1993deSMatthew G Knepley 
1666aa1993deSMatthew G Knepley   PetscFunctionBegin;
1667aa1993deSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1668aa1993deSMatthew G Knepley   PetscValidPointer(mem, 4);
1669aa1993deSMatthew G Knepley   for (p = &dm->workout; (link = *p); p = &link->next) {
1670aa1993deSMatthew G Knepley     if (link->mem == *(void **)mem) {
1671aa1993deSMatthew G Knepley       *p            = link->next;
1672aa1993deSMatthew G Knepley       link->next    = dm->workin;
1673aa1993deSMatthew G Knepley       dm->workin    = link;
16740298fd71SBarry Smith       *(void **)mem = NULL;
1675aa1993deSMatthew G Knepley       PetscFunctionReturn(0);
1676aa1993deSMatthew G Knepley     }
1677aa1993deSMatthew G Knepley   }
1678aa1993deSMatthew G Knepley   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Array was not checked out");
1679aa1993deSMatthew G Knepley }
1680e7c4fc90SDmitry Karpeev 
16818cda7954SMatthew G. Knepley /*@C
1682bb7acecfSBarry Smith   DMSetNullSpaceConstructor - Provide a callback function which constructs the nullspace for a given field, defined with `DMAddField()`, when function spaces
1683bb7acecfSBarry Smith   are joined or split, such as in `DMCreateSubDM()`
16848cda7954SMatthew G. Knepley 
1685bb7acecfSBarry Smith   Logically collective on dm
16868cda7954SMatthew G. Knepley 
16878cda7954SMatthew G. Knepley   Input Parameters:
1688bb7acecfSBarry Smith + dm     - The `DM`
16898cda7954SMatthew G. Knepley . field  - The field number for the nullspace
16908cda7954SMatthew G. Knepley - nullsp - A callback to create the nullspace
16918cda7954SMatthew G. Knepley 
1692147403d9SBarry Smith   Calling sequence of nullsp:
1693147403d9SBarry Smith .vb
1694147403d9SBarry Smith     PetscErrorCode nullsp(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)
1695147403d9SBarry Smith .ve
1696bb7acecfSBarry Smith +  dm        - The present `DM`
1697bb7acecfSBarry Smith .  origField - The field number given above, in the original `DM`
1698147403d9SBarry Smith .  field     - The field number in dm
1699147403d9SBarry Smith -  nullSpace - The nullspace for the given field
17008cda7954SMatthew G. Knepley 
170149762cbcSSatish Balay   Level: intermediate
170249762cbcSSatish Balay 
1703bb7acecfSBarry Smith   Fortran Notes:
1704bb7acecfSBarry Smith   This function is not available from Fortran.
1705bb7acecfSBarry Smith 
1706bb7acecfSBarry Smith .seealso: `DMAddField()`, `DMGetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
1707147403d9SBarry Smith @*/
1708d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM, PetscInt, PetscInt, MatNullSpace *))
1709d71ae5a4SJacob Faibussowitsch {
1710435a35e8SMatthew G Knepley   PetscFunctionBegin;
1711435a35e8SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
17127a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1713435a35e8SMatthew G Knepley   dm->nullspaceConstructors[field] = nullsp;
1714435a35e8SMatthew G Knepley   PetscFunctionReturn(0);
1715435a35e8SMatthew G Knepley }
1716435a35e8SMatthew G Knepley 
17178cda7954SMatthew G. Knepley /*@C
1718bb7acecfSBarry Smith   DMGetNullSpaceConstructor - Return the callback function which constructs the nullspace for a given field, defined with `DMAddField()`
17198cda7954SMatthew G. Knepley 
17208cda7954SMatthew G. Knepley   Not collective
17218cda7954SMatthew G. Knepley 
17228cda7954SMatthew G. Knepley   Input Parameters:
1723bb7acecfSBarry Smith + dm     - The `DM`
17248cda7954SMatthew G. Knepley - field  - The field number for the nullspace
17258cda7954SMatthew G. Knepley 
17268cda7954SMatthew G. Knepley   Output Parameter:
17278cda7954SMatthew G. Knepley . nullsp - A callback to create the nullspace
17288cda7954SMatthew G. Knepley 
1729147403d9SBarry Smith   Calling sequence of nullsp:
1730147403d9SBarry Smith .vb
1731147403d9SBarry Smith     PetscErrorCode nullsp(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)
1732147403d9SBarry Smith .ve
1733147403d9SBarry Smith +  dm        - The present DM
1734147403d9SBarry Smith .  origField - The field number given above, in the original DM
1735147403d9SBarry Smith .  field     - The field number in dm
1736147403d9SBarry Smith -  nullSpace - The nullspace for the given field
17378cda7954SMatthew G. Knepley 
1738bb7acecfSBarry Smith   Fortran Note:
1739bb7acecfSBarry Smith   This function is not available from Fortran.
17408cda7954SMatthew G. Knepley 
174149762cbcSSatish Balay    Level: intermediate
174249762cbcSSatish Balay 
1743bb7acecfSBarry Smith .seealso: `DMAddField()`, `DMGetField()`, `DMSetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
1744147403d9SBarry Smith @*/
1745d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM, PetscInt, PetscInt, MatNullSpace *))
1746d71ae5a4SJacob Faibussowitsch {
17470a50eb56SMatthew G. Knepley   PetscFunctionBegin;
17480a50eb56SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1749f9d4088aSMatthew G. Knepley   PetscValidPointer(nullsp, 3);
17507a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
17510a50eb56SMatthew G. Knepley   *nullsp = dm->nullspaceConstructors[field];
17520a50eb56SMatthew G. Knepley   PetscFunctionReturn(0);
17530a50eb56SMatthew G. Knepley }
17540a50eb56SMatthew G. Knepley 
17558cda7954SMatthew G. Knepley /*@C
1756bb7acecfSBarry Smith   DMSetNearNullSpaceConstructor - Provide a callback function which constructs the near-nullspace for a given field, defined with `DMAddField()`
17578cda7954SMatthew G. Knepley 
1758bb7acecfSBarry Smith   Logically collective on dm
17598cda7954SMatthew G. Knepley 
17608cda7954SMatthew G. Knepley   Input Parameters:
1761bb7acecfSBarry Smith + dm     - The `DM`
17628cda7954SMatthew G. Knepley . field  - The field number for the nullspace
17638cda7954SMatthew G. Knepley - nullsp - A callback to create the near-nullspace
17648cda7954SMatthew G. Knepley 
1765147403d9SBarry Smith   Calling sequence of nullsp:
1766147403d9SBarry Smith .vb
1767147403d9SBarry Smith     PetscErrorCode nullsp(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)
1768147403d9SBarry Smith .ve
1769bb7acecfSBarry Smith +  dm        - The present `DM`
1770bb7acecfSBarry Smith .  origField - The field number given above, in the original `DM`
1771147403d9SBarry Smith .  field     - The field number in dm
1772147403d9SBarry Smith -  nullSpace - The nullspace for the given field
17738cda7954SMatthew G. Knepley 
1774bb7acecfSBarry Smith   Fortran Note:
1775bb7acecfSBarry Smith   This function is not available from Fortran.
17768cda7954SMatthew G. Knepley 
177749762cbcSSatish Balay    Level: intermediate
177849762cbcSSatish Balay 
1779bb7acecfSBarry Smith .seealso: `DMAddField()`, `DMGetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`,
1780bb7acecfSBarry Smith           `MatNullSpace`
1781147403d9SBarry Smith @*/
1782d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM, PetscInt, PetscInt, MatNullSpace *))
1783d71ae5a4SJacob Faibussowitsch {
1784f9d4088aSMatthew G. Knepley   PetscFunctionBegin;
1785f9d4088aSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
17867a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1787f9d4088aSMatthew G. Knepley   dm->nearnullspaceConstructors[field] = nullsp;
1788f9d4088aSMatthew G. Knepley   PetscFunctionReturn(0);
1789f9d4088aSMatthew G. Knepley }
1790f9d4088aSMatthew G. Knepley 
17918cda7954SMatthew G. Knepley /*@C
1792bb7acecfSBarry Smith   DMGetNearNullSpaceConstructor - Return the callback function which constructs the near-nullspace for a given field, defined with `DMAddField()`
17938cda7954SMatthew G. Knepley 
17948cda7954SMatthew G. Knepley   Not collective
17958cda7954SMatthew G. Knepley 
17968cda7954SMatthew G. Knepley   Input Parameters:
1797bb7acecfSBarry Smith + dm     - The `DM`
17988cda7954SMatthew G. Knepley - field  - The field number for the nullspace
17998cda7954SMatthew G. Knepley 
18008cda7954SMatthew G. Knepley   Output Parameter:
18018cda7954SMatthew G. Knepley . nullsp - A callback to create the near-nullspace
18028cda7954SMatthew G. Knepley 
1803147403d9SBarry Smith   Calling sequence of nullsp:
1804147403d9SBarry Smith .vb
1805147403d9SBarry Smith     PetscErrorCode nullsp(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)
1806147403d9SBarry Smith .ve
1807bb7acecfSBarry Smith +  dm        - The present `DM`
1808bb7acecfSBarry Smith .  origField - The field number given above, in the original `DM`
1809147403d9SBarry Smith .  field     - The field number in dm
1810147403d9SBarry Smith -  nullSpace - The nullspace for the given field
18118cda7954SMatthew G. Knepley 
1812bb7acecfSBarry Smith   Fortran Note:
1813bb7acecfSBarry Smith   This function is not available from Fortran.
18148cda7954SMatthew G. Knepley 
181549762cbcSSatish Balay    Level: intermediate
181649762cbcSSatish Balay 
1817bb7acecfSBarry Smith .seealso: `DMAddField()`, `DMGetField()`, `DMSetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`,
1818bb7acecfSBarry Smith           `MatNullSpace`, `DMCreateSuperDM()`
1819147403d9SBarry Smith @*/
1820d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM, PetscInt, PetscInt, MatNullSpace *))
1821d71ae5a4SJacob Faibussowitsch {
1822f9d4088aSMatthew G. Knepley   PetscFunctionBegin;
1823f9d4088aSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1824f9d4088aSMatthew G. Knepley   PetscValidPointer(nullsp, 3);
18257a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1826f9d4088aSMatthew G. Knepley   *nullsp = dm->nearnullspaceConstructors[field];
1827f9d4088aSMatthew G. Knepley   PetscFunctionReturn(0);
1828f9d4088aSMatthew G. Knepley }
1829f9d4088aSMatthew G. Knepley 
18304f3b5142SJed Brown /*@C
1831bb7acecfSBarry Smith   DMCreateFieldIS - Creates a set of `IS` objects with the global indices of dofs for each field defined with `DMAddField()`
18324d343eeaSMatthew G Knepley 
18334d343eeaSMatthew G Knepley   Not collective
18344d343eeaSMatthew G Knepley 
18354d343eeaSMatthew G Knepley   Input Parameter:
1836bb7acecfSBarry Smith . dm - the `DM` object
18374d343eeaSMatthew G Knepley 
18384d343eeaSMatthew G Knepley   Output Parameters:
18390298fd71SBarry Smith + numFields  - The number of fields (or NULL if not requested)
1840bb7acecfSBarry Smith . fieldNames - The number of each field (or NULL if not requested)
18410298fd71SBarry Smith - fields     - The global indices for each field (or NULL if not requested)
18424d343eeaSMatthew G Knepley 
18434d343eeaSMatthew G Knepley   Level: intermediate
18444d343eeaSMatthew G Knepley 
1845bb7acecfSBarry Smith   Note:
184621c9b008SJed Brown   The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with
1847bb7acecfSBarry Smith   `PetscFree()`, every entry of fields should be destroyed with `ISDestroy()`, and both arrays should be freed with
1848bb7acecfSBarry Smith   `PetscFree()`.
184921c9b008SJed Brown 
1850bb7acecfSBarry Smith   Fortran Note:
1851bb7acecfSBarry Smith   Not available in Fortran.
1852bb7acecfSBarry Smith 
1853bb7acecfSBarry Smith   Developer Note:
1854bb7acecfSBarry Smith   It is not clear why both this function and `DMCreateFieldDecomposition()` exist. Having two seems redundant and confusing. This function should
1855bb7acecfSBarry Smith   likely be removed.
1856bb7acecfSBarry Smith 
1857bb7acecfSBarry Smith .seealso: `DMAddField()`, `DMGetField()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
1858bb7acecfSBarry Smith           `DMCreateFieldDecomposition()`
18594d343eeaSMatthew G Knepley @*/
1860d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldIS(DM dm, PetscInt *numFields, char ***fieldNames, IS **fields)
1861d71ae5a4SJacob Faibussowitsch {
186237d0c07bSMatthew G Knepley   PetscSection section, sectionGlobal;
18634d343eeaSMatthew G Knepley 
18644d343eeaSMatthew G Knepley   PetscFunctionBegin;
18654d343eeaSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
186669ca1f37SDmitry Karpeev   if (numFields) {
1867534a8f05SLisandro Dalcin     PetscValidIntPointer(numFields, 2);
186869ca1f37SDmitry Karpeev     *numFields = 0;
186969ca1f37SDmitry Karpeev   }
187037d0c07bSMatthew G Knepley   if (fieldNames) {
187137d0c07bSMatthew G Knepley     PetscValidPointer(fieldNames, 3);
18720298fd71SBarry Smith     *fieldNames = NULL;
187369ca1f37SDmitry Karpeev   }
187469ca1f37SDmitry Karpeev   if (fields) {
187569ca1f37SDmitry Karpeev     PetscValidPointer(fields, 4);
18760298fd71SBarry Smith     *fields = NULL;
187769ca1f37SDmitry Karpeev   }
18789566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
187937d0c07bSMatthew G Knepley   if (section) {
18803a544194SStefano Zampini     PetscInt *fieldSizes, *fieldNc, **fieldIndices;
188137d0c07bSMatthew G Knepley     PetscInt  nF, f, pStart, pEnd, p;
188237d0c07bSMatthew G Knepley 
18839566063dSJacob Faibussowitsch     PetscCall(DMGetGlobalSection(dm, &sectionGlobal));
18849566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetNumFields(section, &nF));
18859566063dSJacob Faibussowitsch     PetscCall(PetscMalloc3(nF, &fieldSizes, nF, &fieldNc, nF, &fieldIndices));
18869566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd));
188737d0c07bSMatthew G Knepley     for (f = 0; f < nF; ++f) {
188837d0c07bSMatthew G Knepley       fieldSizes[f] = 0;
18899566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldComponents(section, f, &fieldNc[f]));
189037d0c07bSMatthew G Knepley     }
189137d0c07bSMatthew G Knepley     for (p = pStart; p < pEnd; ++p) {
189237d0c07bSMatthew G Knepley       PetscInt gdof;
189337d0c07bSMatthew G Knepley 
18949566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof));
189537d0c07bSMatthew G Knepley       if (gdof > 0) {
189637d0c07bSMatthew G Knepley         for (f = 0; f < nF; ++f) {
18973a544194SStefano Zampini           PetscInt fdof, fcdof, fpdof;
189837d0c07bSMatthew G Knepley 
18999566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof));
19009566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof));
19013a544194SStefano Zampini           fpdof = fdof - fcdof;
19023a544194SStefano Zampini           if (fpdof && fpdof != fieldNc[f]) {
19033a544194SStefano Zampini             /* Layout does not admit a pointwise block size */
19043a544194SStefano Zampini             fieldNc[f] = 1;
19053a544194SStefano Zampini           }
19063a544194SStefano Zampini           fieldSizes[f] += fpdof;
190737d0c07bSMatthew G Knepley         }
190837d0c07bSMatthew G Knepley       }
190937d0c07bSMatthew G Knepley     }
191037d0c07bSMatthew G Knepley     for (f = 0; f < nF; ++f) {
19119566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(fieldSizes[f], &fieldIndices[f]));
191237d0c07bSMatthew G Knepley       fieldSizes[f] = 0;
191337d0c07bSMatthew G Knepley     }
191437d0c07bSMatthew G Knepley     for (p = pStart; p < pEnd; ++p) {
191537d0c07bSMatthew G Knepley       PetscInt gdof, goff;
191637d0c07bSMatthew G Knepley 
19179566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof));
191837d0c07bSMatthew G Knepley       if (gdof > 0) {
19199566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(sectionGlobal, p, &goff));
192037d0c07bSMatthew G Knepley         for (f = 0; f < nF; ++f) {
192137d0c07bSMatthew G Knepley           PetscInt fdof, fcdof, fc;
192237d0c07bSMatthew G Knepley 
19239566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof));
19249566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof));
1925ad540459SPierre Jolivet           for (fc = 0; fc < fdof - fcdof; ++fc, ++fieldSizes[f]) fieldIndices[f][fieldSizes[f]] = goff++;
192637d0c07bSMatthew G Knepley         }
192737d0c07bSMatthew G Knepley       }
192837d0c07bSMatthew G Knepley     }
19298865f1eaSKarl Rupp     if (numFields) *numFields = nF;
193037d0c07bSMatthew G Knepley     if (fieldNames) {
19319566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nF, fieldNames));
193237d0c07bSMatthew G Knepley       for (f = 0; f < nF; ++f) {
193337d0c07bSMatthew G Knepley         const char *fieldName;
193437d0c07bSMatthew G Knepley 
19359566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetFieldName(section, f, &fieldName));
19369566063dSJacob Faibussowitsch         PetscCall(PetscStrallocpy(fieldName, (char **)&(*fieldNames)[f]));
193737d0c07bSMatthew G Knepley       }
193837d0c07bSMatthew G Knepley     }
193937d0c07bSMatthew G Knepley     if (fields) {
19409566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nF, fields));
194137d0c07bSMatthew G Knepley       for (f = 0; f < nF; ++f) {
19423a544194SStefano Zampini         PetscInt bs, in[2], out[2];
19433a544194SStefano Zampini 
19449566063dSJacob Faibussowitsch         PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), fieldSizes[f], fieldIndices[f], PETSC_OWN_POINTER, &(*fields)[f]));
19453a544194SStefano Zampini         in[0] = -fieldNc[f];
19463a544194SStefano Zampini         in[1] = fieldNc[f];
19471c2dc1cbSBarry Smith         PetscCall(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm)));
19483a544194SStefano Zampini         bs = (-out[0] == out[1]) ? out[1] : 1;
19499566063dSJacob Faibussowitsch         PetscCall(ISSetBlockSize((*fields)[f], bs));
195037d0c07bSMatthew G Knepley       }
195137d0c07bSMatthew G Knepley     }
19529566063dSJacob Faibussowitsch     PetscCall(PetscFree3(fieldSizes, fieldNc, fieldIndices));
1953dbbe0bcdSBarry Smith   } else PetscTryTypeMethod(dm, createfieldis, numFields, fieldNames, fields);
19544d343eeaSMatthew G Knepley   PetscFunctionReturn(0);
19554d343eeaSMatthew G Knepley }
19564d343eeaSMatthew G Knepley 
195716621825SDmitry Karpeev /*@C
1958bb7acecfSBarry Smith   DMCreateFieldDecomposition - Returns a list of `IS` objects defining a decomposition of a problem into subproblems
1959bb7acecfSBarry Smith                           corresponding to different fields: each `IS` contains the global indices of the dofs of the
1960bb7acecfSBarry Smith                           corresponding field, defined by `DMAddField()`. The optional list of `DM`s define the `DM` for each subproblem.
1961bb7acecfSBarry Smith                           The same as `DMCreateFieldIS()` but also returns a `DM` for each field.
1962e7c4fc90SDmitry Karpeev 
1963e7c4fc90SDmitry Karpeev   Not collective
1964e7c4fc90SDmitry Karpeev 
1965e7c4fc90SDmitry Karpeev   Input Parameter:
1966bb7acecfSBarry Smith . dm - the `DM` object
1967e7c4fc90SDmitry Karpeev 
1968e7c4fc90SDmitry Karpeev   Output Parameters:
1969bb7acecfSBarry Smith + len       - The number of fields (or NULL if not requested)
19700298fd71SBarry Smith . namelist  - The name for each field (or NULL if not requested)
19710298fd71SBarry Smith . islist    - The global indices for each field (or NULL if not requested)
1972bb7acecfSBarry Smith - dmlist    - The `DM`s for each field subproblem (or NULL, if not requested; if NULL is returned, no `DM`s are defined)
1973e7c4fc90SDmitry Karpeev 
1974e7c4fc90SDmitry Karpeev   Level: intermediate
1975e7c4fc90SDmitry Karpeev 
1976bb7acecfSBarry Smith   Note:
1977e7c4fc90SDmitry Karpeev   The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with
1978bb7acecfSBarry Smith   `PetscFree()`, every entry of is should be destroyed with `ISDestroy()`, every entry of dm should be destroyed with `DMDestroy()`,
1979bb7acecfSBarry Smith   and all of the arrays should be freed with `PetscFree()`.
1980e7c4fc90SDmitry Karpeev 
1981bb7acecfSBarry Smith   Fortran Note:
1982bb7acecfSBarry Smith   Not available in Fortran.
1983bb7acecfSBarry Smith 
1984bb7acecfSBarry Smith   Developer Note:
1985bb7acecfSBarry Smith   It is not clear why this function and `DMCreateFieldIS()` exist. Having two seems redundant and confusing.
1986bb7acecfSBarry Smith 
1987bb7acecfSBarry Smith .seealso: `DMAddField()`, `DMCreateFieldIS()`, `DMCreateSubDM()`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`
1988e7c4fc90SDmitry Karpeev @*/
1989d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldDecomposition(DM dm, PetscInt *len, char ***namelist, IS **islist, DM **dmlist)
1990d71ae5a4SJacob Faibussowitsch {
1991e7c4fc90SDmitry Karpeev   PetscFunctionBegin;
1992e7c4fc90SDmitry Karpeev   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
19938865f1eaSKarl Rupp   if (len) {
1994534a8f05SLisandro Dalcin     PetscValidIntPointer(len, 2);
19958865f1eaSKarl Rupp     *len = 0;
19968865f1eaSKarl Rupp   }
19978865f1eaSKarl Rupp   if (namelist) {
19988865f1eaSKarl Rupp     PetscValidPointer(namelist, 3);
1999ea78f98cSLisandro Dalcin     *namelist = NULL;
20008865f1eaSKarl Rupp   }
20018865f1eaSKarl Rupp   if (islist) {
20028865f1eaSKarl Rupp     PetscValidPointer(islist, 4);
2003ea78f98cSLisandro Dalcin     *islist = NULL;
20048865f1eaSKarl Rupp   }
20058865f1eaSKarl Rupp   if (dmlist) {
20068865f1eaSKarl Rupp     PetscValidPointer(dmlist, 5);
2007ea78f98cSLisandro Dalcin     *dmlist = NULL;
20088865f1eaSKarl Rupp   }
2009f3f0edfdSDmitry Karpeev   /*
2010f3f0edfdSDmitry Karpeev    Is it a good idea to apply the following check across all impls?
2011f3f0edfdSDmitry Karpeev    Perhaps some impls can have a well-defined decomposition before DMSetUp?
2012f3f0edfdSDmitry Karpeev    This, however, follows the general principle that accessors are not well-behaved until the object is set up.
2013f3f0edfdSDmitry Karpeev    */
20147a8be351SBarry Smith   PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp");
201516621825SDmitry Karpeev   if (!dm->ops->createfielddecomposition) {
2016435a35e8SMatthew G Knepley     PetscSection section;
2017435a35e8SMatthew G Knepley     PetscInt     numFields, f;
2018435a35e8SMatthew G Knepley 
20199566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
20209566063dSJacob Faibussowitsch     if (section) PetscCall(PetscSectionGetNumFields(section, &numFields));
2021435a35e8SMatthew G Knepley     if (section && numFields && dm->ops->createsubdm) {
2022f25d98f1SMatthew G. Knepley       if (len) *len = numFields;
20239566063dSJacob Faibussowitsch       if (namelist) PetscCall(PetscMalloc1(numFields, namelist));
20249566063dSJacob Faibussowitsch       if (islist) PetscCall(PetscMalloc1(numFields, islist));
20259566063dSJacob Faibussowitsch       if (dmlist) PetscCall(PetscMalloc1(numFields, dmlist));
2026435a35e8SMatthew G Knepley       for (f = 0; f < numFields; ++f) {
2027435a35e8SMatthew G Knepley         const char *fieldName;
2028435a35e8SMatthew G Knepley 
20299566063dSJacob Faibussowitsch         PetscCall(DMCreateSubDM(dm, 1, &f, islist ? &(*islist)[f] : NULL, dmlist ? &(*dmlist)[f] : NULL));
203003dc3394SMatthew G. Knepley         if (namelist) {
20319566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldName(section, f, &fieldName));
20329566063dSJacob Faibussowitsch           PetscCall(PetscStrallocpy(fieldName, (char **)&(*namelist)[f]));
2033435a35e8SMatthew G Knepley         }
203403dc3394SMatthew G. Knepley       }
2035435a35e8SMatthew G Knepley     } else {
20369566063dSJacob Faibussowitsch       PetscCall(DMCreateFieldIS(dm, len, namelist, islist));
2037e7c4fc90SDmitry Karpeev       /* By default there are no DMs associated with subproblems. */
20380298fd71SBarry Smith       if (dmlist) *dmlist = NULL;
2039e7c4fc90SDmitry Karpeev     }
2040dbbe0bcdSBarry Smith   } else PetscUseTypeMethod(dm, createfielddecomposition, len, namelist, islist, dmlist);
204116621825SDmitry Karpeev   PetscFunctionReturn(0);
204216621825SDmitry Karpeev }
204316621825SDmitry Karpeev 
2044412a4547SAlexis Marboeuf /*@C
2045412a4547SAlexis Marboeuf   DMCreateSubDM - Returns an IS and DM encapsulating a subproblem defined by the fields passed in.
2046412a4547SAlexis Marboeuf                   The fields are defined by DMCreateFieldIS().
2047435a35e8SMatthew G Knepley 
2048435a35e8SMatthew G Knepley   Not collective
2049435a35e8SMatthew G Knepley 
2050435a35e8SMatthew G Knepley   Input Parameters:
2051bb7acecfSBarry Smith + dm        - The `DM `object
2052bb7acecfSBarry Smith . numFields - The number of fields to select
20532adcc780SMatthew G. Knepley - fields    - The field numbers of the selected fields
2054435a35e8SMatthew G Knepley 
2055435a35e8SMatthew G Knepley   Output Parameters:
2056bb7acecfSBarry Smith + is - The global indices for all the degrees of freedom in the new sub `DM`
2057bb7acecfSBarry Smith - subdm - The `DM` for the subproblem
2058435a35e8SMatthew G Knepley 
2059bb7acecfSBarry Smith   Note:
2060bb7acecfSBarry Smith   You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed
20615d3b26e6SMatthew G. Knepley 
2062435a35e8SMatthew G Knepley   Level: intermediate
2063435a35e8SMatthew G Knepley 
2064bb7acecfSBarry Smith .seealso: `DMCreateFieldIS()`, `DMCreateFieldDecomposition()`, `DMAddField()`, `DMCreateSuperDM()`, `DM`, `IS`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`
2065435a35e8SMatthew G Knepley @*/
2066d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSubDM(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm)
2067d71ae5a4SJacob Faibussowitsch {
2068435a35e8SMatthew G Knepley   PetscFunctionBegin;
2069435a35e8SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2070dadcf809SJacob Faibussowitsch   PetscValidIntPointer(fields, 3);
20718865f1eaSKarl Rupp   if (is) PetscValidPointer(is, 4);
20728865f1eaSKarl Rupp   if (subdm) PetscValidPointer(subdm, 5);
2073dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createsubdm, numFields, fields, is, subdm);
2074435a35e8SMatthew G Knepley   PetscFunctionReturn(0);
2075435a35e8SMatthew G Knepley }
2076435a35e8SMatthew G Knepley 
20772adcc780SMatthew G. Knepley /*@C
2078bb7acecfSBarry Smith   DMCreateSuperDM - Returns an arrays of `IS` and `DM` encapsulating a superproblem defined by multiple `DM`s passed in.
20792adcc780SMatthew G. Knepley 
20802adcc780SMatthew G. Knepley   Not collective
20812adcc780SMatthew G. Knepley 
2082d8d19677SJose E. Roman   Input Parameters:
2083bb7acecfSBarry Smith + dms - The `DM` objects
2084bb7acecfSBarry Smith - n - The number of `DM`s
20852adcc780SMatthew G. Knepley 
20862adcc780SMatthew G. Knepley   Output Parameters:
2087bb7acecfSBarry Smith + is - The global indices for each of subproblem within the super `DM`, or NULL
2088bb7acecfSBarry Smith - superdm - The `DM` for the superproblem
20892adcc780SMatthew G. Knepley 
2090bb7acecfSBarry Smith   Note:
2091bb7acecfSBarry Smith   You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed
20925d3b26e6SMatthew G. Knepley 
20932adcc780SMatthew G. Knepley   Level: intermediate
20942adcc780SMatthew G. Knepley 
2095bb7acecfSBarry Smith .seealso: `DM`, `DMCreateSubDM()`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`
20962adcc780SMatthew G. Knepley @*/
2097d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSuperDM(DM dms[], PetscInt n, IS **is, DM *superdm)
2098d71ae5a4SJacob Faibussowitsch {
20992adcc780SMatthew G. Knepley   PetscInt i;
21002adcc780SMatthew G. Knepley 
21012adcc780SMatthew G. Knepley   PetscFunctionBegin;
21022adcc780SMatthew G. Knepley   PetscValidPointer(dms, 1);
2103ad540459SPierre Jolivet   for (i = 0; i < n; ++i) PetscValidHeaderSpecific(dms[i], DM_CLASSID, 1);
21042adcc780SMatthew G. Knepley   if (is) PetscValidPointer(is, 3);
2105a42bd24dSMatthew G. Knepley   PetscValidPointer(superdm, 4);
2106bb7acecfSBarry Smith   PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of DMs must be nonnegative: %" PetscInt_FMT, n);
2107bb7acecfSBarry Smith   if (n) {
2108b9d85ea2SLisandro Dalcin     DM dm = dms[0];
2109dbbe0bcdSBarry Smith     PetscCall((*dm->ops->createsuperdm)(dms, n, is, superdm));
21102adcc780SMatthew G. Knepley   }
21112adcc780SMatthew G. Knepley   PetscFunctionReturn(0);
21122adcc780SMatthew G. Knepley }
21132adcc780SMatthew G. Knepley 
211416621825SDmitry Karpeev /*@C
2115bb7acecfSBarry Smith   DMCreateDomainDecomposition - Returns lists of `IS` objects defining a decomposition of a problem into subproblems
2116bb7acecfSBarry Smith                           corresponding to restrictions to pairs of nested subdomains: each `IS` contains the global
2117bb7acecfSBarry Smith                           indices of the dofs of the corresponding subdomains with in the dofs of the original `DM`.
2118bb7acecfSBarry Smith                           The inner subdomains conceptually define a nonoverlapping covering, while outer subdomains can overlap.
2119bb7acecfSBarry Smith                           The optional list of `DM`s define a `DM` for each subproblem.
212016621825SDmitry Karpeev 
212116621825SDmitry Karpeev   Not collective
212216621825SDmitry Karpeev 
212316621825SDmitry Karpeev   Input Parameter:
2124bb7acecfSBarry Smith . dm - the `DM` object
212516621825SDmitry Karpeev 
212616621825SDmitry Karpeev   Output Parameters:
2127bb7acecfSBarry Smith + n            - The number of subproblems in the domain decomposition (or NULL if not requested)
21280298fd71SBarry Smith . namelist    - The name for each subdomain (or NULL if not requested)
21290298fd71SBarry Smith . innerislist - The global indices for each inner subdomain (or NULL, if not requested)
21300298fd71SBarry Smith . outerislist - The global indices for each outer subdomain (or NULL, if not requested)
2131bb7acecfSBarry Smith - dmlist      - The `DM`s for each subdomain subproblem (or NULL, if not requested; if NULL is returned, no `DM`s are defined)
213216621825SDmitry Karpeev 
213316621825SDmitry Karpeev   Level: intermediate
213416621825SDmitry Karpeev 
2135bb7acecfSBarry Smith   Note:
213616621825SDmitry Karpeev   The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with
2137bb7acecfSBarry Smith   `PetscFree()`, every entry of is should be destroyed with `ISDestroy()`, every entry of dm should be destroyed with `DMDestroy()`,
2138bb7acecfSBarry Smith   and all of the arrays should be freed with `PetscFree()`.
213916621825SDmitry Karpeev 
2140bb7acecfSBarry Smith   Questions:
2141bb7acecfSBarry Smith   The dmlist is for the inner subdomains or the outer subdomains or all subdomains?
2142bb7acecfSBarry Smith 
2143bb7acecfSBarry Smith .seealso: `DMCreateFieldDecomposition()`, `DMDestroy()`, `DMCreateDomainDecompositionScatters()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldDecomposition()`
214416621825SDmitry Karpeev @*/
2145d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecomposition(DM dm, PetscInt *n, char ***namelist, IS **innerislist, IS **outerislist, DM **dmlist)
2146d71ae5a4SJacob Faibussowitsch {
2147be081cd6SPeter Brune   DMSubDomainHookLink link;
2148be081cd6SPeter Brune   PetscInt            i, l;
214916621825SDmitry Karpeev 
215016621825SDmitry Karpeev   PetscFunctionBegin;
215116621825SDmitry Karpeev   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
21529371c9d4SSatish Balay   if (n) {
21539371c9d4SSatish Balay     PetscValidIntPointer(n, 2);
21549371c9d4SSatish Balay     *n = 0;
21559371c9d4SSatish Balay   }
21569371c9d4SSatish Balay   if (namelist) {
21579371c9d4SSatish Balay     PetscValidPointer(namelist, 3);
21589371c9d4SSatish Balay     *namelist = NULL;
21599371c9d4SSatish Balay   }
21609371c9d4SSatish Balay   if (innerislist) {
21619371c9d4SSatish Balay     PetscValidPointer(innerislist, 4);
21629371c9d4SSatish Balay     *innerislist = NULL;
21639371c9d4SSatish Balay   }
21649371c9d4SSatish Balay   if (outerislist) {
21659371c9d4SSatish Balay     PetscValidPointer(outerislist, 5);
21669371c9d4SSatish Balay     *outerislist = NULL;
21679371c9d4SSatish Balay   }
21689371c9d4SSatish Balay   if (dmlist) {
21699371c9d4SSatish Balay     PetscValidPointer(dmlist, 6);
21709371c9d4SSatish Balay     *dmlist = NULL;
21719371c9d4SSatish Balay   }
2172f3f0edfdSDmitry Karpeev   /*
2173f3f0edfdSDmitry Karpeev    Is it a good idea to apply the following check across all impls?
2174f3f0edfdSDmitry Karpeev    Perhaps some impls can have a well-defined decomposition before DMSetUp?
2175f3f0edfdSDmitry Karpeev    This, however, follows the general principle that accessors are not well-behaved until the object is set up.
2176f3f0edfdSDmitry Karpeev    */
21777a8be351SBarry Smith   PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp");
217816621825SDmitry Karpeev   if (dm->ops->createdomaindecomposition) {
2179dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm, createdomaindecomposition, &l, namelist, innerislist, outerislist, dmlist);
218014a18fd3SPeter Brune     /* copy subdomain hooks and context over to the subdomain DMs */
2181f891f5b9SPatrick Sanan     if (dmlist && *dmlist) {
2182be081cd6SPeter Brune       for (i = 0; i < l; i++) {
2183be081cd6SPeter Brune         for (link = dm->subdomainhook; link; link = link->next) {
21849566063dSJacob Faibussowitsch           if (link->ddhook) PetscCall((*link->ddhook)(dm, (*dmlist)[i], link->ctx));
2185be081cd6SPeter Brune         }
2186648262bbSPatrick Sanan         if (dm->ctx) (*dmlist)[i]->ctx = dm->ctx;
2187e7c4fc90SDmitry Karpeev       }
218814a18fd3SPeter Brune     }
2189bb7acecfSBarry Smith     if (n) *n = l;
219014a18fd3SPeter Brune   }
2191e30e807fSPeter Brune   PetscFunctionReturn(0);
2192e30e807fSPeter Brune }
2193e30e807fSPeter Brune 
2194e30e807fSPeter Brune /*@C
2195e30e807fSPeter Brune   DMCreateDomainDecompositionScatters - Returns scatters to the subdomain vectors from the global vector
2196e30e807fSPeter Brune 
2197e30e807fSPeter Brune   Not collective
2198e30e807fSPeter Brune 
2199e30e807fSPeter Brune   Input Parameters:
2200bb7acecfSBarry Smith + dm - the `DM` object
2201e30e807fSPeter Brune . n  - the number of subdomain scatters
2202e30e807fSPeter Brune - subdms - the local subdomains
2203e30e807fSPeter Brune 
2204e30e807fSPeter Brune   Output Parameters:
22056b867d5aSJose E. Roman + iscat - scatter from global vector to nonoverlapping global vector entries on subdomain
2206e30e807fSPeter Brune . oscat - scatter from global vector to overlapping global vector entries on subdomain
2207e30e807fSPeter Brune - gscat - scatter from global vector to local vector on subdomain (fills in ghosts)
2208e30e807fSPeter Brune 
2209bb7acecfSBarry Smith   Note:
2210bb7acecfSBarry Smith     This is an alternative to the iis and ois arguments in `DMCreateDomainDecomposition()` that allow for the solution
2211e30e807fSPeter Brune   of general nonlinear problems with overlapping subdomain methods.  While merely having index sets that enable subsets
2212e30e807fSPeter Brune   of the residual equations to be created is fine for linear problems, nonlinear problems require local assembly of
2213e30e807fSPeter Brune   solution and residual data.
2214e30e807fSPeter Brune 
2215bb7acecfSBarry Smith   Questions:
2216bb7acecfSBarry Smith   Can the subdms input be anything or are they exactly the `DM` obtained from `DMCreateDomainDecomposition()`?
2217bb7acecfSBarry Smith 
2218e30e807fSPeter Brune   Level: developer
2219e30e807fSPeter Brune 
2220bb7acecfSBarry Smith .seealso: `DM`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`
2221e30e807fSPeter Brune @*/
2222d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecompositionScatters(DM dm, PetscInt n, DM *subdms, VecScatter **iscat, VecScatter **oscat, VecScatter **gscat)
2223d71ae5a4SJacob Faibussowitsch {
2224e30e807fSPeter Brune   PetscFunctionBegin;
2225e30e807fSPeter Brune   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2226e30e807fSPeter Brune   PetscValidPointer(subdms, 3);
2227dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createddscatters, n, subdms, iscat, oscat, gscat);
2228e7c4fc90SDmitry Karpeev   PetscFunctionReturn(0);
2229e7c4fc90SDmitry Karpeev }
2230e7c4fc90SDmitry Karpeev 
223147c6ae99SBarry Smith /*@
2232bb7acecfSBarry Smith   DMRefine - Refines a `DM` object using a standard nonadaptive refinement of the underlying mesh
223347c6ae99SBarry Smith 
2234d083f849SBarry Smith   Collective on dm
223547c6ae99SBarry Smith 
2236d8d19677SJose E. Roman   Input Parameters:
2237bb7acecfSBarry Smith + dm   - the `DM` object
2238bb7acecfSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`)
223947c6ae99SBarry Smith 
224047c6ae99SBarry Smith   Output Parameter:
2241bb7acecfSBarry Smith . dmf - the refined `D`M, or NULL
2242ae0a1c52SMatthew G Knepley 
2243f27dd7c6SMatthew G. Knepley   Options Database Keys:
2244412e9a14SMatthew G. Knepley . -dm_plex_cell_refiner <strategy> - chooses the refinement strategy, e.g. regular, tohex
2245412e9a14SMatthew G. Knepley 
2246bb7acecfSBarry Smith   Note:
2247bb7acecfSBarry Smith   If no refinement was done, the return value is NULL
224847c6ae99SBarry Smith 
224947c6ae99SBarry Smith   Level: developer
225047c6ae99SBarry Smith 
2251bb7acecfSBarry Smith .seealso: `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
225247c6ae99SBarry Smith @*/
2253d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefine(DM dm, MPI_Comm comm, DM *dmf)
2254d71ae5a4SJacob Faibussowitsch {
2255c833c3b5SJed Brown   DMRefineHookLink link;
225647c6ae99SBarry Smith 
225747c6ae99SBarry Smith   PetscFunctionBegin;
2258732e2eb9SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
22599566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_Refine, dm, 0, 0, 0));
2260dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, refine, comm, dmf);
22614057135bSMatthew G Knepley   if (*dmf) {
226243842a1eSJed Brown     (*dmf)->ops->creatematrix = dm->ops->creatematrix;
22638865f1eaSKarl Rupp 
22649566063dSJacob Faibussowitsch     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmf));
22658865f1eaSKarl Rupp 
2266644e2e5bSBarry Smith     (*dmf)->ctx       = dm->ctx;
22670598a293SJed Brown     (*dmf)->leveldown = dm->leveldown;
2268656b349aSBarry Smith     (*dmf)->levelup   = dm->levelup + 1;
22698865f1eaSKarl Rupp 
22709566063dSJacob Faibussowitsch     PetscCall(DMSetMatType(*dmf, dm->mattype));
2271c833c3b5SJed Brown     for (link = dm->refinehook; link; link = link->next) {
22721baa6e33SBarry Smith       if (link->refinehook) PetscCall((*link->refinehook)(dm, *dmf, link->ctx));
2273c833c3b5SJed Brown     }
2274c833c3b5SJed Brown   }
22759566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_Refine, dm, 0, 0, 0));
2276c833c3b5SJed Brown   PetscFunctionReturn(0);
2277c833c3b5SJed Brown }
2278c833c3b5SJed Brown 
2279bb9467b5SJed Brown /*@C
2280c833c3b5SJed Brown    DMRefineHookAdd - adds a callback to be run when interpolating a nonlinear problem to a finer grid
2281c833c3b5SJed Brown 
2282bb7acecfSBarry Smith    Logically Collective on coarse
2283c833c3b5SJed Brown 
22844165533cSJose E. Roman    Input Parameters:
2285bb7acecfSBarry Smith +  coarse - `DM` on which to run a hook when interpolating to a finer level
2286bb7acecfSBarry Smith .  refinehook - function to run when setting up the finer level
2287bb7acecfSBarry Smith .  interphook - function to run to update data on finer levels (once per `SNESSolve`())
22880298fd71SBarry Smith -  ctx - [optional] user-defined context for provide data for the hooks (may be NULL)
2289c833c3b5SJed Brown 
2290c833c3b5SJed Brown    Calling sequence of refinehook:
2291c833c3b5SJed Brown $    refinehook(DM coarse,DM fine,void *ctx);
2292c833c3b5SJed Brown 
2293bb7acecfSBarry Smith +  coarse - coarse level `DM`
2294bb7acecfSBarry Smith .  fine - fine level `DM` to interpolate problem to
2295c833c3b5SJed Brown -  ctx - optional user-defined function context
2296c833c3b5SJed Brown 
2297c833c3b5SJed Brown    Calling sequence for interphook:
2298c833c3b5SJed Brown $    interphook(DM coarse,Mat interp,DM fine,void *ctx)
2299c833c3b5SJed Brown 
2300bb7acecfSBarry Smith +  coarse - coarse level `DM`
2301c833c3b5SJed Brown .  interp - matrix interpolating a coarse-level solution to the finer grid
2302bb7acecfSBarry Smith .  fine - fine level `DM` to update
2303c833c3b5SJed Brown -  ctx - optional user-defined function context
2304c833c3b5SJed Brown 
2305c833c3b5SJed Brown    Level: advanced
2306c833c3b5SJed Brown 
2307c833c3b5SJed Brown    Notes:
2308bb7acecfSBarry Smith    This function is only needed if auxiliary data that is attached to the `DM`s via, for example, `PetscObjectCompose()`, needs to be
2309bb7acecfSBarry Smith    passed to fine grids while grid sequencing.
2310bb7acecfSBarry Smith 
2311bb7acecfSBarry Smith    The actual interpolation is done when `DMInterpolate()` is called.
2312c833c3b5SJed Brown 
2313c833c3b5SJed Brown    If this function is called multiple times, the hooks will be run in the order they are added.
2314c833c3b5SJed Brown 
2315bb7acecfSBarry Smith    Fortran Note:
2316bb7acecfSBarry Smith    This function is not available from Fortran.
2317bb9467b5SJed Brown 
2318bb7acecfSBarry Smith .seealso: `DM`, `DMCoarsenHookAdd()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2319c833c3b5SJed Brown @*/
2320d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookAdd(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx)
2321d71ae5a4SJacob Faibussowitsch {
2322c833c3b5SJed Brown   DMRefineHookLink link, *p;
2323c833c3b5SJed Brown 
2324c833c3b5SJed Brown   PetscFunctionBegin;
2325c833c3b5SJed Brown   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
23263d8e3701SJed Brown   for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
23273d8e3701SJed Brown     if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) PetscFunctionReturn(0);
23283d8e3701SJed Brown   }
23299566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
2330c833c3b5SJed Brown   link->refinehook = refinehook;
2331c833c3b5SJed Brown   link->interphook = interphook;
2332c833c3b5SJed Brown   link->ctx        = ctx;
23330298fd71SBarry Smith   link->next       = NULL;
2334c833c3b5SJed Brown   *p               = link;
2335c833c3b5SJed Brown   PetscFunctionReturn(0);
2336c833c3b5SJed Brown }
2337c833c3b5SJed Brown 
23383d8e3701SJed Brown /*@C
2339bb7acecfSBarry Smith    DMRefineHookRemove - remove a callback from the list of hooks, that have been set with `DMRefineHookAdd()`, to be run when interpolating
2340bb7acecfSBarry Smith     a nonlinear problem to a finer grid
23413d8e3701SJed Brown 
2342bb7acecfSBarry Smith    Logically Collective on coarse
23433d8e3701SJed Brown 
23444165533cSJose E. Roman    Input Parameters:
2345bb7acecfSBarry Smith +  coarse - the `DM` on which to run a hook when restricting to a coarser level
2346bb7acecfSBarry Smith .  refinehook - function to run when setting up a finer level
2347bb7acecfSBarry Smith .  interphook - function to run to update data on finer levels
23483d8e3701SJed Brown -  ctx - [optional] user-defined context for provide data for the hooks (may be NULL)
23493d8e3701SJed Brown 
23503d8e3701SJed Brown    Level: advanced
23513d8e3701SJed Brown 
2352bb7acecfSBarry Smith    Note:
23533d8e3701SJed Brown    This function does nothing if the hook is not in the list.
23543d8e3701SJed Brown 
2355bb7acecfSBarry Smith    Fortran Note:
2356bb7acecfSBarry Smith    This function is not available from Fortran.
23573d8e3701SJed Brown 
2358bb7acecfSBarry Smith .seealso: `DMRefineHookAdd()`, `DMCoarsenHookRemove()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
23593d8e3701SJed Brown @*/
2360d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookRemove(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx)
2361d71ae5a4SJacob Faibussowitsch {
23623d8e3701SJed Brown   DMRefineHookLink link, *p;
23633d8e3701SJed Brown 
23643d8e3701SJed Brown   PetscFunctionBegin;
23653d8e3701SJed Brown   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
23663d8e3701SJed Brown   for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Search the list of current hooks */
23673d8e3701SJed Brown     if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) {
23683d8e3701SJed Brown       link = *p;
23693d8e3701SJed Brown       *p   = link->next;
23709566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
23713d8e3701SJed Brown       break;
23723d8e3701SJed Brown     }
23733d8e3701SJed Brown   }
23743d8e3701SJed Brown   PetscFunctionReturn(0);
23753d8e3701SJed Brown }
23763d8e3701SJed Brown 
2377c833c3b5SJed Brown /*@
2378bb7acecfSBarry Smith    DMInterpolate - interpolates user-defined problem data attached to a `DM` to a finer `DM` by running hooks registered by `DMRefineHookAdd()`
2379c833c3b5SJed Brown 
2380c833c3b5SJed Brown    Collective if any hooks are
2381c833c3b5SJed Brown 
23824165533cSJose E. Roman    Input Parameters:
2383bb7acecfSBarry Smith +  coarse - coarser `DM` to use as a base
2384bb7acecfSBarry Smith .  interp - interpolation matrix, apply using `MatInterpolate()`
2385bb7acecfSBarry Smith -  fine - finer `DM` to update
2386c833c3b5SJed Brown 
2387c833c3b5SJed Brown    Level: developer
2388c833c3b5SJed Brown 
2389bb7acecfSBarry Smith    Developer Note:
2390bb7acecfSBarry Smith    This routine is called `DMInterpolate()` while the hook is called `DMRefineHookAdd()`. It would be better to have an
2391bb7acecfSBarry Smith    an API with consistent terminology.
2392bb7acecfSBarry Smith 
2393bb7acecfSBarry Smith .seealso: `DM`, `DMRefineHookAdd()`, `MatInterpolate()`
2394c833c3b5SJed Brown @*/
2395d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolate(DM coarse, Mat interp, DM fine)
2396d71ae5a4SJacob Faibussowitsch {
2397c833c3b5SJed Brown   DMRefineHookLink link;
2398c833c3b5SJed Brown 
2399c833c3b5SJed Brown   PetscFunctionBegin;
2400c833c3b5SJed Brown   for (link = fine->refinehook; link; link = link->next) {
24011baa6e33SBarry Smith     if (link->interphook) PetscCall((*link->interphook)(coarse, interp, fine, link->ctx));
24024057135bSMatthew G Knepley   }
240347c6ae99SBarry Smith   PetscFunctionReturn(0);
240447c6ae99SBarry Smith }
240547c6ae99SBarry Smith 
2406eb3f98d2SBarry Smith /*@
24071f3379b2SToby Isaac    DMInterpolateSolution - Interpolates a solution from a coarse mesh to a fine mesh.
24081f3379b2SToby Isaac 
2409bb7acecfSBarry Smith    Collective on dm
24101f3379b2SToby Isaac 
24114165533cSJose E. Roman    Input Parameters:
2412bb7acecfSBarry Smith +  coarse - coarse `DM`
2413bb7acecfSBarry Smith .  fine   - fine `DM`
2414bb7acecfSBarry Smith .  interp - (optional) the matrix computed by `DMCreateInterpolation()`.  Implementations may not need this, but if it
2415bb7acecfSBarry Smith             is available it can avoid some recomputation.  If it is provided, `MatInterpolate()` will be used if
2416bb7acecfSBarry Smith             the coarse `DM` does not have a specialized implementation.
24171f3379b2SToby Isaac -  coarseSol - solution on the coarse mesh
24181f3379b2SToby Isaac 
24194165533cSJose E. Roman    Output Parameter:
24201f3379b2SToby Isaac .  fineSol - the interpolation of coarseSol to the fine mesh
24211f3379b2SToby Isaac 
24221f3379b2SToby Isaac    Level: developer
24231f3379b2SToby Isaac 
2424bb7acecfSBarry Smith    Note:
2425bb7acecfSBarry Smith    This function exists because the interpolation of a solution vector between meshes is not always a linear
24261f3379b2SToby Isaac    map.  For example, if a boundary value problem has an inhomogeneous Dirichlet boundary condition that is compressed
24271f3379b2SToby Isaac    out of the solution vector.  Or if interpolation is inherently a nonlinear operation, such as a method using
24281f3379b2SToby Isaac    slope-limiting reconstruction.
24291f3379b2SToby Isaac 
2430bb7acecfSBarry Smith    Developer Note:
2431bb7acecfSBarry Smith    This doesn't just interpolate "solutions" so its API name is questionable.
2432bb7acecfSBarry Smith 
2433bb7acecfSBarry Smith .seealso: `DMInterpolate()`, `DMCreateInterpolation()`
24341f3379b2SToby Isaac @*/
2435d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolateSolution(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol)
2436d71ae5a4SJacob Faibussowitsch {
24371f3379b2SToby Isaac   PetscErrorCode (*interpsol)(DM, DM, Mat, Vec, Vec) = NULL;
24381f3379b2SToby Isaac 
24391f3379b2SToby Isaac   PetscFunctionBegin;
24401f3379b2SToby Isaac   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
24411f3379b2SToby Isaac   if (interp) PetscValidHeaderSpecific(interp, MAT_CLASSID, 3);
24421f3379b2SToby Isaac   PetscValidHeaderSpecific(coarseSol, VEC_CLASSID, 4);
24431f3379b2SToby Isaac   PetscValidHeaderSpecific(fineSol, VEC_CLASSID, 5);
24441f3379b2SToby Isaac 
24459566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)coarse, "DMInterpolateSolution_C", &interpsol));
24461f3379b2SToby Isaac   if (interpsol) {
24479566063dSJacob Faibussowitsch     PetscCall((*interpsol)(coarse, fine, interp, coarseSol, fineSol));
24481f3379b2SToby Isaac   } else if (interp) {
24499566063dSJacob Faibussowitsch     PetscCall(MatInterpolate(interp, coarseSol, fineSol));
245098921bdaSJacob Faibussowitsch   } else SETERRQ(PetscObjectComm((PetscObject)coarse), PETSC_ERR_SUP, "DM %s does not implement DMInterpolateSolution()", ((PetscObject)coarse)->type_name);
24511f3379b2SToby Isaac   PetscFunctionReturn(0);
24521f3379b2SToby Isaac }
24531f3379b2SToby Isaac 
24541f3379b2SToby Isaac /*@
2455bb7acecfSBarry Smith     DMGetRefineLevel - Gets the number of refinements that have generated this `DM` from some initial `DM`.
2456eb3f98d2SBarry Smith 
2457eb3f98d2SBarry Smith     Not Collective
2458eb3f98d2SBarry Smith 
2459eb3f98d2SBarry Smith     Input Parameter:
2460bb7acecfSBarry Smith .   dm - the `DM` object
2461eb3f98d2SBarry Smith 
2462eb3f98d2SBarry Smith     Output Parameter:
2463eb3f98d2SBarry Smith .   level - number of refinements
2464eb3f98d2SBarry Smith 
2465eb3f98d2SBarry Smith     Level: developer
2466eb3f98d2SBarry Smith 
2467bb7acecfSBarry Smith     Note:
2468bb7acecfSBarry Smith     This can be used, by example, to set the number of coarser levels associated with this `DM` for a multigrid solver.
2469bb7acecfSBarry Smith 
2470bb7acecfSBarry Smith .seealso: `DMRefine()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
2471eb3f98d2SBarry Smith 
2472eb3f98d2SBarry Smith @*/
2473d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRefineLevel(DM dm, PetscInt *level)
2474d71ae5a4SJacob Faibussowitsch {
2475eb3f98d2SBarry Smith   PetscFunctionBegin;
2476eb3f98d2SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2477eb3f98d2SBarry Smith   *level = dm->levelup;
2478eb3f98d2SBarry Smith   PetscFunctionReturn(0);
2479eb3f98d2SBarry Smith }
2480eb3f98d2SBarry Smith 
2481fef3a512SBarry Smith /*@
2482bb7acecfSBarry Smith     DMSetRefineLevel - Sets the number of refinements that have generated this `DM`.
2483fef3a512SBarry Smith 
2484fef3a512SBarry Smith     Not Collective
2485fef3a512SBarry Smith 
2486d8d19677SJose E. Roman     Input Parameters:
2487bb7acecfSBarry Smith +   dm - the `DM` object
2488fef3a512SBarry Smith -   level - number of refinements
2489fef3a512SBarry Smith 
2490fef3a512SBarry Smith     Level: advanced
2491fef3a512SBarry Smith 
249295452b02SPatrick Sanan     Notes:
2493bb7acecfSBarry Smith     This value is used by `PCMG` to determine how many multigrid levels to use
2494fef3a512SBarry Smith 
2495bb7acecfSBarry Smith     The values are usually set automatically by the process that is causing the refinements of an initial `DM` by calling this routine.
2496bb7acecfSBarry Smith 
2497bb7acecfSBarry Smith .seealso: `DMGetRefineLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
2498fef3a512SBarry Smith 
2499fef3a512SBarry Smith @*/
2500d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRefineLevel(DM dm, PetscInt level)
2501d71ae5a4SJacob Faibussowitsch {
2502fef3a512SBarry Smith   PetscFunctionBegin;
2503fef3a512SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2504fef3a512SBarry Smith   dm->levelup = level;
2505fef3a512SBarry Smith   PetscFunctionReturn(0);
2506fef3a512SBarry Smith }
2507fef3a512SBarry Smith 
2508d410b0cfSMatthew G. Knepley /*@
2509bb7acecfSBarry Smith   DMExtrude - Extrude a `DM` object from a surface
2510d410b0cfSMatthew G. Knepley 
2511d410b0cfSMatthew G. Knepley   Collective on dm
2512d410b0cfSMatthew G. Knepley 
2513f1a722f8SMatthew G. Knepley   Input Parameters:
2514bb7acecfSBarry Smith + dm     - the `DM` object
2515d410b0cfSMatthew G. Knepley - layers - the number of extruded cell layers
2516d410b0cfSMatthew G. Knepley 
2517d410b0cfSMatthew G. Knepley   Output Parameter:
2518bb7acecfSBarry Smith . dme - the extruded `DM`, or NULL
2519d410b0cfSMatthew G. Knepley 
2520bb7acecfSBarry Smith   Note:
2521bb7acecfSBarry Smith   If no extrusion was done, the return value is NULL
2522d410b0cfSMatthew G. Knepley 
2523d410b0cfSMatthew G. Knepley   Level: developer
2524d410b0cfSMatthew G. Knepley 
2525bb7acecfSBarry Smith .seealso: `DMRefine()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`
2526d410b0cfSMatthew G. Knepley @*/
2527d71ae5a4SJacob Faibussowitsch PetscErrorCode DMExtrude(DM dm, PetscInt layers, DM *dme)
2528d71ae5a4SJacob Faibussowitsch {
2529d410b0cfSMatthew G. Knepley   PetscFunctionBegin;
2530d410b0cfSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2531dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, extrude, layers, dme);
2532d410b0cfSMatthew G. Knepley   if (*dme) {
2533d410b0cfSMatthew G. Knepley     (*dme)->ops->creatematrix = dm->ops->creatematrix;
25349566063dSJacob Faibussowitsch     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dme));
2535d410b0cfSMatthew G. Knepley     (*dme)->ctx = dm->ctx;
25369566063dSJacob Faibussowitsch     PetscCall(DMSetMatType(*dme, dm->mattype));
2537d410b0cfSMatthew G. Knepley   }
2538d410b0cfSMatthew G. Knepley   PetscFunctionReturn(0);
2539d410b0cfSMatthew G. Knepley }
2540d410b0cfSMatthew G. Knepley 
2541d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformDM_Internal(DM dm, DM *tdm)
2542d71ae5a4SJacob Faibussowitsch {
2543ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2544ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2545ca3d3a14SMatthew G. Knepley   PetscValidPointer(tdm, 2);
2546ca3d3a14SMatthew G. Knepley   *tdm = dm->transformDM;
2547ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
2548ca3d3a14SMatthew G. Knepley }
2549ca3d3a14SMatthew G. Knepley 
2550d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformVec_Internal(DM dm, Vec *tv)
2551d71ae5a4SJacob Faibussowitsch {
2552ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2553ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2554ca3d3a14SMatthew G. Knepley   PetscValidPointer(tv, 2);
2555ca3d3a14SMatthew G. Knepley   *tv = dm->transform;
2556ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
2557ca3d3a14SMatthew G. Knepley }
2558ca3d3a14SMatthew G. Knepley 
2559ca3d3a14SMatthew G. Knepley /*@
2560bb7acecfSBarry Smith   DMHasBasisTransform - Whether the `DM` employs a basis transformation from functions in global vectors to functions in local vectors
2561ca3d3a14SMatthew G. Knepley 
2562ca3d3a14SMatthew G. Knepley   Input Parameter:
2563ca3d3a14SMatthew G. Knepley . dm - The DM
2564ca3d3a14SMatthew G. Knepley 
2565ca3d3a14SMatthew G. Knepley   Output Parameter:
2566ca3d3a14SMatthew G. Knepley . flg - PETSC_TRUE if a basis transformation should be done
2567ca3d3a14SMatthew G. Knepley 
2568ca3d3a14SMatthew G. Knepley   Level: developer
2569ca3d3a14SMatthew G. Knepley 
2570bb7acecfSBarry Smith .seealso: `DM`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`, `DMPlexCreateBasisRotation()`
2571ca3d3a14SMatthew G. Knepley @*/
2572d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasBasisTransform(DM dm, PetscBool *flg)
2573d71ae5a4SJacob Faibussowitsch {
2574ca3d3a14SMatthew G. Knepley   Vec tv;
2575ca3d3a14SMatthew G. Knepley 
2576ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2577ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2578534a8f05SLisandro Dalcin   PetscValidBoolPointer(flg, 2);
25799566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
2580ca3d3a14SMatthew G. Knepley   *flg = tv ? PETSC_TRUE : PETSC_FALSE;
2581ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
2582ca3d3a14SMatthew G. Knepley }
2583ca3d3a14SMatthew G. Knepley 
2584d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConstructBasisTransform_Internal(DM dm)
2585d71ae5a4SJacob Faibussowitsch {
2586ca3d3a14SMatthew G. Knepley   PetscSection s, ts;
2587ca3d3a14SMatthew G. Knepley   PetscScalar *ta;
2588ca3d3a14SMatthew G. Knepley   PetscInt     cdim, pStart, pEnd, p, Nf, f, Nc, dof;
2589ca3d3a14SMatthew G. Knepley 
2590ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
25919566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
25929566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
25939566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
25949566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
25959566063dSJacob Faibussowitsch   PetscCall(DMClone(dm, &dm->transformDM));
25969566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm->transformDM, &ts));
25979566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetNumFields(ts, Nf));
25989566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(ts, pStart, pEnd));
2599ca3d3a14SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
26009566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetFieldComponents(s, f, &Nc));
2601ca3d3a14SMatthew G. Knepley     /* We could start to label fields by their transformation properties */
2602ca3d3a14SMatthew G. Knepley     if (Nc != cdim) continue;
2603ca3d3a14SMatthew G. Knepley     for (p = pStart; p < pEnd; ++p) {
26049566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(s, p, f, &dof));
2605ca3d3a14SMatthew G. Knepley       if (!dof) continue;
26069566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetFieldDof(ts, p, f, PetscSqr(cdim)));
26079566063dSJacob Faibussowitsch       PetscCall(PetscSectionAddDof(ts, p, PetscSqr(cdim)));
2608ca3d3a14SMatthew G. Knepley     }
2609ca3d3a14SMatthew G. Knepley   }
26109566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(ts));
26119566063dSJacob Faibussowitsch   PetscCall(DMCreateLocalVector(dm->transformDM, &dm->transform));
26129566063dSJacob Faibussowitsch   PetscCall(VecGetArray(dm->transform, &ta));
2613ca3d3a14SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
2614ca3d3a14SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
26159566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof));
2616ca3d3a14SMatthew G. Knepley       if (dof) {
2617ca3d3a14SMatthew G. Knepley         PetscReal          x[3] = {0.0, 0.0, 0.0};
2618ca3d3a14SMatthew G. Knepley         PetscScalar       *tva;
2619ca3d3a14SMatthew G. Knepley         const PetscScalar *A;
2620ca3d3a14SMatthew G. Knepley 
2621ca3d3a14SMatthew G. Knepley         /* TODO Get quadrature point for this dual basis vector for coordinate */
26229566063dSJacob Faibussowitsch         PetscCall((*dm->transformGetMatrix)(dm, x, PETSC_TRUE, &A, dm->transformCtx));
26239566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRef(dm->transformDM, p, f, ta, (void *)&tva));
26249566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(tva, A, PetscSqr(cdim)));
2625ca3d3a14SMatthew G. Knepley       }
2626ca3d3a14SMatthew G. Knepley     }
2627ca3d3a14SMatthew G. Knepley   }
26289566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(dm->transform, &ta));
2629ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
2630ca3d3a14SMatthew G. Knepley }
2631ca3d3a14SMatthew G. Knepley 
2632d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyTransform(DM dm, DM newdm)
2633d71ae5a4SJacob Faibussowitsch {
2634ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2635ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2636ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(newdm, DM_CLASSID, 2);
2637ca3d3a14SMatthew G. Knepley   newdm->transformCtx       = dm->transformCtx;
2638ca3d3a14SMatthew G. Knepley   newdm->transformSetUp     = dm->transformSetUp;
2639ca3d3a14SMatthew G. Knepley   newdm->transformDestroy   = NULL;
2640ca3d3a14SMatthew G. Knepley   newdm->transformGetMatrix = dm->transformGetMatrix;
26419566063dSJacob Faibussowitsch   if (newdm->transformSetUp) PetscCall(DMConstructBasisTransform_Internal(newdm));
2642ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
2643ca3d3a14SMatthew G. Knepley }
2644ca3d3a14SMatthew G. Knepley 
2645bb9467b5SJed Brown /*@C
2646bb7acecfSBarry Smith    DMGlobalToLocalHookAdd - adds a callback to be run when `DMGlobalToLocal()` is called
2647baf369e7SPeter Brune 
2648bb7acecfSBarry Smith    Logically Collective on dm
2649baf369e7SPeter Brune 
26504165533cSJose E. Roman    Input Parameters:
2651bb7acecfSBarry Smith +  dm - the `DM`
2652bb7acecfSBarry Smith .  beginhook - function to run at the beginning of `DMGlobalToLocalBegin()`
2653bb7acecfSBarry Smith .  endhook - function to run after `DMGlobalToLocalEnd()` has completed
26540298fd71SBarry Smith -  ctx - [optional] user-defined context for provide data for the hooks (may be NULL)
2655baf369e7SPeter Brune 
2656baf369e7SPeter Brune    Calling sequence for beginhook:
2657baf369e7SPeter Brune $    beginhook(DM fine,VecScatter out,VecScatter in,DM coarse,void *ctx)
2658baf369e7SPeter Brune 
2659baf369e7SPeter Brune +  dm - global DM
2660baf369e7SPeter Brune .  g - global vector
2661baf369e7SPeter Brune .  mode - mode
2662baf369e7SPeter Brune .  l - local vector
2663baf369e7SPeter Brune -  ctx - optional user-defined function context
2664baf369e7SPeter Brune 
2665baf369e7SPeter Brune    Calling sequence for endhook:
2666ec4806b8SPeter Brune $    endhook(DM fine,VecScatter out,VecScatter in,DM coarse,void *ctx)
2667baf369e7SPeter Brune 
2668baf369e7SPeter Brune +  global - global DM
2669baf369e7SPeter Brune -  ctx - optional user-defined function context
2670baf369e7SPeter Brune 
2671baf369e7SPeter Brune    Level: advanced
2672baf369e7SPeter Brune 
2673bb7acecfSBarry Smith    Note:
2674bb7acecfSBarry Smith    The hook may be used to provide, for example, values that represent boundary conditions in the local vectors that do not exist on the global vector.
2675bb7acecfSBarry Smith 
2676bb7acecfSBarry Smith .seealso: `DM`, `DMGlobalToLocal()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2677baf369e7SPeter Brune @*/
2678d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM, Vec, InsertMode, Vec, void *), PetscErrorCode (*endhook)(DM, Vec, InsertMode, Vec, void *), void *ctx)
2679d71ae5a4SJacob Faibussowitsch {
2680baf369e7SPeter Brune   DMGlobalToLocalHookLink link, *p;
2681baf369e7SPeter Brune 
2682baf369e7SPeter Brune   PetscFunctionBegin;
2683baf369e7SPeter Brune   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2684baf369e7SPeter Brune   for (p = &dm->gtolhook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */
26859566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
2686baf369e7SPeter Brune   link->beginhook = beginhook;
2687baf369e7SPeter Brune   link->endhook   = endhook;
2688baf369e7SPeter Brune   link->ctx       = ctx;
26890298fd71SBarry Smith   link->next      = NULL;
2690baf369e7SPeter Brune   *p              = link;
2691baf369e7SPeter Brune   PetscFunctionReturn(0);
2692baf369e7SPeter Brune }
2693baf369e7SPeter Brune 
2694d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGlobalToLocalHook_Constraints(DM dm, Vec g, InsertMode mode, Vec l, void *ctx)
2695d71ae5a4SJacob Faibussowitsch {
26964c274da1SToby Isaac   Mat          cMat;
269779769bd5SJed Brown   Vec          cVec, cBias;
26984c274da1SToby Isaac   PetscSection section, cSec;
26994c274da1SToby Isaac   PetscInt     pStart, pEnd, p, dof;
27004c274da1SToby Isaac 
27014c274da1SToby Isaac   PetscFunctionBegin;
27024c274da1SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
27039566063dSJacob Faibussowitsch   PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, &cBias));
27044c274da1SToby Isaac   if (cMat && (mode == INSERT_VALUES || mode == INSERT_ALL_VALUES || mode == INSERT_BC_VALUES)) {
27055db9a05bSToby Isaac     PetscInt nRows;
27065db9a05bSToby Isaac 
27079566063dSJacob Faibussowitsch     PetscCall(MatGetSize(cMat, &nRows, NULL));
27085db9a05bSToby Isaac     if (nRows <= 0) PetscFunctionReturn(0);
27099566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
27109566063dSJacob Faibussowitsch     PetscCall(MatCreateVecs(cMat, NULL, &cVec));
27119566063dSJacob Faibussowitsch     PetscCall(MatMult(cMat, l, cVec));
27129566063dSJacob Faibussowitsch     if (cBias) PetscCall(VecAXPY(cVec, 1., cBias));
27139566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd));
27144c274da1SToby Isaac     for (p = pStart; p < pEnd; p++) {
27159566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(cSec, p, &dof));
27164c274da1SToby Isaac       if (dof) {
27174c274da1SToby Isaac         PetscScalar *vals;
27189566063dSJacob Faibussowitsch         PetscCall(VecGetValuesSection(cVec, cSec, p, &vals));
27199566063dSJacob Faibussowitsch         PetscCall(VecSetValuesSection(l, section, p, vals, INSERT_ALL_VALUES));
27204c274da1SToby Isaac       }
27214c274da1SToby Isaac     }
27229566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&cVec));
27234c274da1SToby Isaac   }
27244c274da1SToby Isaac   PetscFunctionReturn(0);
27254c274da1SToby Isaac }
27264c274da1SToby Isaac 
272747c6ae99SBarry Smith /*@
272801729b5cSPatrick Sanan     DMGlobalToLocal - update local vectors from global vector
272901729b5cSPatrick Sanan 
2730d083f849SBarry Smith     Neighbor-wise Collective on dm
273101729b5cSPatrick Sanan 
273201729b5cSPatrick Sanan     Input Parameters:
2733bb7acecfSBarry Smith +   dm - the `DM` object
273401729b5cSPatrick Sanan .   g - the global vector
2735bb7acecfSBarry Smith .   mode - `INSERT_VALUES` or `ADD_VALUES`
273601729b5cSPatrick Sanan -   l - the local vector
273701729b5cSPatrick Sanan 
273801729b5cSPatrick Sanan     Notes:
2739bb7acecfSBarry Smith     The communication involved in this update can be overlapped with computation by instead using
2740bb7acecfSBarry Smith     `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()`.
2741bb7acecfSBarry Smith 
2742bb7acecfSBarry Smith     `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process.
274301729b5cSPatrick Sanan 
274401729b5cSPatrick Sanan     Level: beginner
274501729b5cSPatrick Sanan 
2746bb7acecfSBarry Smith .seealso: `DM`, `DMGlobalToLocalHookAdd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`,
2747bb7acecfSBarry Smith           `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`,
2748bb7acecfSBarry Smith           `DMGlobalToLocalBegin()` `DMGlobalToLocalEnd()`
274901729b5cSPatrick Sanan 
275001729b5cSPatrick Sanan @*/
2751d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocal(DM dm, Vec g, InsertMode mode, Vec l)
2752d71ae5a4SJacob Faibussowitsch {
275301729b5cSPatrick Sanan   PetscFunctionBegin;
27549566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, g, mode, l));
27559566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, g, mode, l));
275601729b5cSPatrick Sanan   PetscFunctionReturn(0);
275701729b5cSPatrick Sanan }
275801729b5cSPatrick Sanan 
275901729b5cSPatrick Sanan /*@
276047c6ae99SBarry Smith     DMGlobalToLocalBegin - Begins updating local vectors from global vector
276147c6ae99SBarry Smith 
2762d083f849SBarry Smith     Neighbor-wise Collective on dm
276347c6ae99SBarry Smith 
276447c6ae99SBarry Smith     Input Parameters:
2765bb7acecfSBarry Smith +   dm - the `DM` object
276647c6ae99SBarry Smith .   g - the global vector
2767bb7acecfSBarry Smith .   mode - `INSERT_VALUES` or `ADD_VALUES`
276847c6ae99SBarry Smith -   l - the local vector
276947c6ae99SBarry Smith 
277001729b5cSPatrick Sanan     Level: intermediate
277147c6ae99SBarry Smith 
2772bb7acecfSBarry Smith     Notes:
2773bb7acecfSBarry Smith     The operation is completed with `DMGlobalToLocalEnd()`
2774bb7acecfSBarry Smith 
2775bb7acecfSBarry Smith     One can perform local computations between the `DMGlobalToLocalBegin()` and  `DMGlobalToLocalEnd()` to overlap communication and computation
2776bb7acecfSBarry Smith 
2777bb7acecfSBarry Smith     `DMGlobalToLocal()` is a short form of  `DMGlobalToLocalBegin()` and  `DMGlobalToLocalEnd()`
2778bb7acecfSBarry Smith 
2779bb7acecfSBarry Smith     `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process.
2780bb7acecfSBarry Smith 
2781bb7acecfSBarry Smith .seealso: `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`
278247c6ae99SBarry Smith 
278347c6ae99SBarry Smith @*/
2784d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l)
2785d71ae5a4SJacob Faibussowitsch {
27867128ae9fSMatthew G Knepley   PetscSF                 sf;
2787baf369e7SPeter Brune   DMGlobalToLocalHookLink link;
278847c6ae99SBarry Smith 
278947c6ae99SBarry Smith   PetscFunctionBegin;
2790171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2791baf369e7SPeter Brune   for (link = dm->gtolhook; link; link = link->next) {
27921baa6e33SBarry Smith     if (link->beginhook) PetscCall((*link->beginhook)(dm, g, mode, l, link->ctx));
2793baf369e7SPeter Brune   }
27949566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
27957128ae9fSMatthew G Knepley   if (sf) {
2796ae5cfb4aSMatthew G. Knepley     const PetscScalar *gArray;
2797ae5cfb4aSMatthew G. Knepley     PetscScalar       *lArray;
2798d0295fc0SJunchao Zhang     PetscMemType       lmtype, gmtype;
27997128ae9fSMatthew G Knepley 
28007a8be351SBarry Smith     PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode);
28019566063dSJacob Faibussowitsch     PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype));
28029566063dSJacob Faibussowitsch     PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype));
28039566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastWithMemTypeBegin(sf, MPIU_SCALAR, gmtype, gArray, lmtype, lArray, MPI_REPLACE));
28049566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayAndMemType(l, &lArray));
28059566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayReadAndMemType(g, &gArray));
28067128ae9fSMatthew G Knepley   } else {
28079566063dSJacob Faibussowitsch     PetscCall((*dm->ops->globaltolocalbegin)(dm, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l));
28087128ae9fSMatthew G Knepley   }
280947c6ae99SBarry Smith   PetscFunctionReturn(0);
281047c6ae99SBarry Smith }
281147c6ae99SBarry Smith 
281247c6ae99SBarry Smith /*@
281347c6ae99SBarry Smith     DMGlobalToLocalEnd - Ends updating local vectors from global vector
281447c6ae99SBarry Smith 
2815d083f849SBarry Smith     Neighbor-wise Collective on dm
281647c6ae99SBarry Smith 
281747c6ae99SBarry Smith     Input Parameters:
2818bb7acecfSBarry Smith +   dm - the `DM` object
281947c6ae99SBarry Smith .   g - the global vector
2820bb7acecfSBarry Smith .   mode - `INSERT_VALUES` or `ADD_VALUES`
282147c6ae99SBarry Smith -   l - the local vector
282247c6ae99SBarry Smith 
282301729b5cSPatrick Sanan     Level: intermediate
282447c6ae99SBarry Smith 
2825bb7acecfSBarry Smith     Note:
2826bb7acecfSBarry Smith     See `DMGlobalToLocalBegin()` for details.
2827bb7acecfSBarry Smith 
2828bb7acecfSBarry Smith .seealso: `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`
282947c6ae99SBarry Smith 
283047c6ae99SBarry Smith @*/
2831d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l)
2832d71ae5a4SJacob Faibussowitsch {
28337128ae9fSMatthew G Knepley   PetscSF                 sf;
2834ae5cfb4aSMatthew G. Knepley   const PetscScalar      *gArray;
2835ae5cfb4aSMatthew G. Knepley   PetscScalar            *lArray;
2836ca3d3a14SMatthew G. Knepley   PetscBool               transform;
2837baf369e7SPeter Brune   DMGlobalToLocalHookLink link;
2838d0295fc0SJunchao Zhang   PetscMemType            lmtype, gmtype;
283947c6ae99SBarry Smith 
284047c6ae99SBarry Smith   PetscFunctionBegin;
2841171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
28429566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
28439566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
28447128ae9fSMatthew G Knepley   if (sf) {
28457a8be351SBarry Smith     PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode);
28467128ae9fSMatthew G Knepley 
28479566063dSJacob Faibussowitsch     PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype));
28489566063dSJacob Faibussowitsch     PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype));
28499566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, gArray, lArray, MPI_REPLACE));
28509566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayAndMemType(l, &lArray));
28519566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayReadAndMemType(g, &gArray));
28529566063dSJacob Faibussowitsch     if (transform) PetscCall(DMPlexGlobalToLocalBasis(dm, l));
28537128ae9fSMatthew G Knepley   } else {
28549566063dSJacob Faibussowitsch     PetscCall((*dm->ops->globaltolocalend)(dm, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l));
28557128ae9fSMatthew G Knepley   }
28569566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalHook_Constraints(dm, g, mode, l, NULL));
2857baf369e7SPeter Brune   for (link = dm->gtolhook; link; link = link->next) {
28589566063dSJacob Faibussowitsch     if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx));
2859baf369e7SPeter Brune   }
286047c6ae99SBarry Smith   PetscFunctionReturn(0);
286147c6ae99SBarry Smith }
286247c6ae99SBarry Smith 
2863d4d07f1eSToby Isaac /*@C
2864d4d07f1eSToby Isaac    DMLocalToGlobalHookAdd - adds a callback to be run when a local to global is called
2865d4d07f1eSToby Isaac 
2866bb7acecfSBarry Smith    Logically Collective on dm
2867d4d07f1eSToby Isaac 
28684165533cSJose E. Roman    Input Parameters:
2869bb7acecfSBarry Smith +  dm - the `DM`
2870bb7acecfSBarry Smith .  beginhook - function to run at the beginning of `DMLocalToGlobalBegin()`
2871bb7acecfSBarry Smith .  endhook - function to run after `DMLocalToGlobalEnd()` has completed
2872d4d07f1eSToby Isaac -  ctx - [optional] user-defined context for provide data for the hooks (may be NULL)
2873d4d07f1eSToby Isaac 
2874d4d07f1eSToby Isaac    Calling sequence for beginhook:
2875d4d07f1eSToby Isaac $    beginhook(DM fine,Vec l,InsertMode mode,Vec g,void *ctx)
2876d4d07f1eSToby Isaac 
2877bb7acecfSBarry Smith +  dm - global `DM`
2878d4d07f1eSToby Isaac .  l - local vector
2879d4d07f1eSToby Isaac .  mode - mode
2880d4d07f1eSToby Isaac .  g - global vector
2881d4d07f1eSToby Isaac -  ctx - optional user-defined function context
2882d4d07f1eSToby Isaac 
2883d4d07f1eSToby Isaac    Calling sequence for endhook:
2884d4d07f1eSToby Isaac $    endhook(DM fine,Vec l,InsertMode mode,Vec g,void *ctx)
2885d4d07f1eSToby Isaac 
2886bb7acecfSBarry Smith +  global - global `DM`
2887d4d07f1eSToby Isaac .  l - local vector
2888d4d07f1eSToby Isaac .  mode - mode
2889d4d07f1eSToby Isaac .  g - global vector
2890d4d07f1eSToby Isaac -  ctx - optional user-defined function context
2891d4d07f1eSToby Isaac 
2892d4d07f1eSToby Isaac    Level: advanced
2893d4d07f1eSToby Isaac 
2894bb7acecfSBarry Smith .seealso: `DMLocalToGlobal()`, `DMRefineHookAdd()`, `DMGlobalToLocalHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2895d4d07f1eSToby Isaac @*/
2896d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM, Vec, InsertMode, Vec, void *), PetscErrorCode (*endhook)(DM, Vec, InsertMode, Vec, void *), void *ctx)
2897d71ae5a4SJacob Faibussowitsch {
2898d4d07f1eSToby Isaac   DMLocalToGlobalHookLink link, *p;
2899d4d07f1eSToby Isaac 
2900d4d07f1eSToby Isaac   PetscFunctionBegin;
2901d4d07f1eSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2902d4d07f1eSToby Isaac   for (p = &dm->ltoghook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */
29039566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
2904d4d07f1eSToby Isaac   link->beginhook = beginhook;
2905d4d07f1eSToby Isaac   link->endhook   = endhook;
2906d4d07f1eSToby Isaac   link->ctx       = ctx;
2907d4d07f1eSToby Isaac   link->next      = NULL;
2908d4d07f1eSToby Isaac   *p              = link;
2909d4d07f1eSToby Isaac   PetscFunctionReturn(0);
2910d4d07f1eSToby Isaac }
2911d4d07f1eSToby Isaac 
2912d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMLocalToGlobalHook_Constraints(DM dm, Vec l, InsertMode mode, Vec g, void *ctx)
2913d71ae5a4SJacob Faibussowitsch {
29144c274da1SToby Isaac   Mat          cMat;
29154c274da1SToby Isaac   Vec          cVec;
29164c274da1SToby Isaac   PetscSection section, cSec;
29174c274da1SToby Isaac   PetscInt     pStart, pEnd, p, dof;
29184c274da1SToby Isaac 
29194c274da1SToby Isaac   PetscFunctionBegin;
29204c274da1SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
29219566063dSJacob Faibussowitsch   PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, NULL));
29224c274da1SToby Isaac   if (cMat && (mode == ADD_VALUES || mode == ADD_ALL_VALUES || mode == ADD_BC_VALUES)) {
29235db9a05bSToby Isaac     PetscInt nRows;
29245db9a05bSToby Isaac 
29259566063dSJacob Faibussowitsch     PetscCall(MatGetSize(cMat, &nRows, NULL));
29265db9a05bSToby Isaac     if (nRows <= 0) PetscFunctionReturn(0);
29279566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
29289566063dSJacob Faibussowitsch     PetscCall(MatCreateVecs(cMat, NULL, &cVec));
29299566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd));
29304c274da1SToby Isaac     for (p = pStart; p < pEnd; p++) {
29319566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(cSec, p, &dof));
29324c274da1SToby Isaac       if (dof) {
29334c274da1SToby Isaac         PetscInt     d;
29344c274da1SToby Isaac         PetscScalar *vals;
29359566063dSJacob Faibussowitsch         PetscCall(VecGetValuesSection(l, section, p, &vals));
29369566063dSJacob Faibussowitsch         PetscCall(VecSetValuesSection(cVec, cSec, p, vals, mode));
29374c274da1SToby Isaac         /* for this to be the true transpose, we have to zero the values that
29384c274da1SToby Isaac          * we just extracted */
2939ad540459SPierre Jolivet         for (d = 0; d < dof; d++) vals[d] = 0.;
29404c274da1SToby Isaac       }
29414c274da1SToby Isaac     }
29429566063dSJacob Faibussowitsch     PetscCall(MatMultTransposeAdd(cMat, cVec, l, l));
29439566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&cVec));
29444c274da1SToby Isaac   }
29454c274da1SToby Isaac   PetscFunctionReturn(0);
29464c274da1SToby Isaac }
294701729b5cSPatrick Sanan /*@
294801729b5cSPatrick Sanan     DMLocalToGlobal - updates global vectors from local vectors
294901729b5cSPatrick Sanan 
2950d083f849SBarry Smith     Neighbor-wise Collective on dm
295101729b5cSPatrick Sanan 
295201729b5cSPatrick Sanan     Input Parameters:
2953bb7acecfSBarry Smith +   dm - the `DM` object
295401729b5cSPatrick Sanan .   l - the local vector
2955bb7acecfSBarry Smith .   mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point.
295601729b5cSPatrick Sanan -   g - the global vector
295701729b5cSPatrick Sanan 
295801729b5cSPatrick Sanan     Notes:
295901729b5cSPatrick Sanan     The communication involved in this update can be overlapped with computation by using
2960bb7acecfSBarry Smith     `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()`.
296101729b5cSPatrick Sanan 
2962bb7acecfSBarry Smith     In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation.
2963bb7acecfSBarry Smith 
2964bb7acecfSBarry Smith     `INSERT_VALUES` is not supported for `DMDA`; in that case simply compute the values directly into a global vector instead of a local one.
2965bb7acecfSBarry Smith 
2966bb7acecfSBarry Smith     Use `DMLocalToGlobalHookAdd()` to add additional operations that are performed on the data during the update process
296701729b5cSPatrick Sanan 
296801729b5cSPatrick Sanan     Level: beginner
296901729b5cSPatrick Sanan 
2970bb7acecfSBarry Smith .seealso: `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`, `DMLocalToGlobalHookAdd()`,  `DMGlobaToLocallHookAdd()`
297101729b5cSPatrick Sanan 
297201729b5cSPatrick Sanan @*/
2973d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobal(DM dm, Vec l, InsertMode mode, Vec g)
2974d71ae5a4SJacob Faibussowitsch {
297501729b5cSPatrick Sanan   PetscFunctionBegin;
29769566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalBegin(dm, l, mode, g));
29779566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalEnd(dm, l, mode, g));
297801729b5cSPatrick Sanan   PetscFunctionReturn(0);
297901729b5cSPatrick Sanan }
29804c274da1SToby Isaac 
298147c6ae99SBarry Smith /*@
298201729b5cSPatrick Sanan     DMLocalToGlobalBegin - begins updating global vectors from local vectors
29839a42bb27SBarry Smith 
2984d083f849SBarry Smith     Neighbor-wise Collective on dm
29859a42bb27SBarry Smith 
29869a42bb27SBarry Smith     Input Parameters:
2987bb7acecfSBarry Smith +   dm - the `DM` object
2988f6813fd5SJed Brown .   l - the local vector
2989bb7acecfSBarry Smith .   mode - `if INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point.
29901eb28f2eSBarry Smith -   g - the global vector
29919a42bb27SBarry Smith 
299295452b02SPatrick Sanan     Notes:
2993bb7acecfSBarry Smith     In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation.
2994bb7acecfSBarry Smith 
2995bb7acecfSBarry Smith     `INSERT_VALUES is` not supported for `DMDA`, in that case simply compute the values directly into a global vector instead of a local one.
2996bb7acecfSBarry Smith 
2997bb7acecfSBarry Smith     Use `DMLocalToGlobalEnd()` to complete the communication process.
2998bb7acecfSBarry Smith 
2999bb7acecfSBarry Smith     `DMLocalToGlobal()` is a short form of  `DMLocalToGlobalBegin()` and  `DMLocalToGlobalEnd()`
3000bb7acecfSBarry Smith 
3001bb7acecfSBarry Smith     `DMLocalToGlobalHookAdd()` may be used to provide additional operations that are performed during the update process.
30029a42bb27SBarry Smith 
300301729b5cSPatrick Sanan     Level: intermediate
30049a42bb27SBarry Smith 
3005bb7acecfSBarry Smith .seealso: `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`
30069a42bb27SBarry Smith 
30079a42bb27SBarry Smith @*/
3008d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalBegin(DM dm, Vec l, InsertMode mode, Vec g)
3009d71ae5a4SJacob Faibussowitsch {
30107128ae9fSMatthew G Knepley   PetscSF                 sf;
301184330215SMatthew G. Knepley   PetscSection            s, gs;
3012d4d07f1eSToby Isaac   DMLocalToGlobalHookLink link;
3013ca3d3a14SMatthew G. Knepley   Vec                     tmpl;
3014ae5cfb4aSMatthew G. Knepley   const PetscScalar      *lArray;
3015ae5cfb4aSMatthew G. Knepley   PetscScalar            *gArray;
3016fa88e482SJed Brown   PetscBool               isInsert, transform, l_inplace = PETSC_FALSE, g_inplace = PETSC_FALSE;
3017d0295fc0SJunchao Zhang   PetscMemType            lmtype = PETSC_MEMTYPE_HOST, gmtype = PETSC_MEMTYPE_HOST;
30189a42bb27SBarry Smith 
30199a42bb27SBarry Smith   PetscFunctionBegin;
3020171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3021d4d07f1eSToby Isaac   for (link = dm->ltoghook; link; link = link->next) {
30221baa6e33SBarry Smith     if (link->beginhook) PetscCall((*link->beginhook)(dm, l, mode, g, link->ctx));
3023d4d07f1eSToby Isaac   }
30249566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalHook_Constraints(dm, l, mode, g, NULL));
30259566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
30269566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
30277128ae9fSMatthew G Knepley   switch (mode) {
30287128ae9fSMatthew G Knepley   case INSERT_VALUES:
30297128ae9fSMatthew G Knepley   case INSERT_ALL_VALUES:
3030d71ae5a4SJacob Faibussowitsch   case INSERT_BC_VALUES:
3031d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_TRUE;
3032d71ae5a4SJacob Faibussowitsch     break;
30337128ae9fSMatthew G Knepley   case ADD_VALUES:
30347128ae9fSMatthew G Knepley   case ADD_ALL_VALUES:
3035d71ae5a4SJacob Faibussowitsch   case ADD_BC_VALUES:
3036d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_FALSE;
3037d71ae5a4SJacob Faibussowitsch     break;
3038d71ae5a4SJacob Faibussowitsch   default:
3039d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode);
30407128ae9fSMatthew G Knepley   }
3041ca3d3a14SMatthew G. Knepley   if ((sf && !isInsert) || (s && isInsert)) {
30429566063dSJacob Faibussowitsch     PetscCall(DMHasBasisTransform(dm, &transform));
3043ca3d3a14SMatthew G. Knepley     if (transform) {
30449566063dSJacob Faibussowitsch       PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
30459566063dSJacob Faibussowitsch       PetscCall(VecCopy(l, tmpl));
30469566063dSJacob Faibussowitsch       PetscCall(DMPlexLocalToGlobalBasis(dm, tmpl));
30479566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(tmpl, &lArray));
3048fa88e482SJed Brown     } else if (isInsert) {
30499566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(l, &lArray));
3050fa88e482SJed Brown     } else {
30519566063dSJacob Faibussowitsch       PetscCall(VecGetArrayReadAndMemType(l, &lArray, &lmtype));
3052fa88e482SJed Brown       l_inplace = PETSC_TRUE;
3053ca3d3a14SMatthew G. Knepley     }
3054fa88e482SJed Brown     if (s && isInsert) {
30559566063dSJacob Faibussowitsch       PetscCall(VecGetArray(g, &gArray));
3056fa88e482SJed Brown     } else {
30579566063dSJacob Faibussowitsch       PetscCall(VecGetArrayAndMemType(g, &gArray, &gmtype));
3058fa88e482SJed Brown       g_inplace = PETSC_TRUE;
3059fa88e482SJed Brown     }
3060ca3d3a14SMatthew G. Knepley     if (sf && !isInsert) {
30619566063dSJacob Faibussowitsch       PetscCall(PetscSFReduceWithMemTypeBegin(sf, MPIU_SCALAR, lmtype, lArray, gmtype, gArray, MPIU_SUM));
306284330215SMatthew G. Knepley     } else if (s && isInsert) {
306384330215SMatthew G. Knepley       PetscInt gStart, pStart, pEnd, p;
306484330215SMatthew G. Knepley 
30659566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalSection(dm, &gs));
30669566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
30679566063dSJacob Faibussowitsch       PetscCall(VecGetOwnershipRange(g, &gStart, NULL));
306884330215SMatthew G. Knepley       for (p = pStart; p < pEnd; ++p) {
3069b3b16f48SMatthew G. Knepley         PetscInt dof, gdof, cdof, gcdof, off, goff, d, e;
307084330215SMatthew G. Knepley 
30719566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(s, p, &dof));
30729566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(gs, p, &gdof));
30739566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintDof(s, p, &cdof));
30749566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintDof(gs, p, &gcdof));
30759566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(s, p, &off));
30769566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(gs, p, &goff));
3077b3b16f48SMatthew G. Knepley         /* Ignore off-process data and points with no global data */
307803442857SMatthew G. Knepley         if (!gdof || goff < 0) continue;
30797a8be351SBarry Smith         PetscCheck(dof == gdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof);
3080b3b16f48SMatthew G. Knepley         /* If no constraints are enforced in the global vector */
3081b3b16f48SMatthew G. Knepley         if (!gcdof) {
308284330215SMatthew G. Knepley           for (d = 0; d < dof; ++d) gArray[goff - gStart + d] = lArray[off + d];
3083b3b16f48SMatthew G. Knepley           /* If constraints are enforced in the global vector */
3084b3b16f48SMatthew G. Knepley         } else if (cdof == gcdof) {
308584330215SMatthew G. Knepley           const PetscInt *cdofs;
308684330215SMatthew G. Knepley           PetscInt        cind = 0;
308784330215SMatthew G. Knepley 
30889566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetConstraintIndices(s, p, &cdofs));
3089b3b16f48SMatthew G. Knepley           for (d = 0, e = 0; d < dof; ++d) {
30909371c9d4SSatish Balay             if ((cind < cdof) && (d == cdofs[cind])) {
30919371c9d4SSatish Balay               ++cind;
30929371c9d4SSatish Balay               continue;
30939371c9d4SSatish Balay             }
3094b3b16f48SMatthew G. Knepley             gArray[goff - gStart + e++] = lArray[off + d];
309584330215SMatthew G. Knepley           }
30967a8be351SBarry Smith         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof);
309784330215SMatthew G. Knepley       }
3098ca3d3a14SMatthew G. Knepley     }
3099fa88e482SJed Brown     if (g_inplace) {
31009566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayAndMemType(g, &gArray));
3101fa88e482SJed Brown     } else {
31029566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(g, &gArray));
3103fa88e482SJed Brown     }
3104ca3d3a14SMatthew G. Knepley     if (transform) {
31059566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(tmpl, &lArray));
31069566063dSJacob Faibussowitsch       PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
3107fa88e482SJed Brown     } else if (l_inplace) {
31089566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayReadAndMemType(l, &lArray));
3109ca3d3a14SMatthew G. Knepley     } else {
31109566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(l, &lArray));
3111ca3d3a14SMatthew G. Knepley     }
31127128ae9fSMatthew G Knepley   } else {
31139566063dSJacob Faibussowitsch     PetscCall((*dm->ops->localtoglobalbegin)(dm, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g));
31147128ae9fSMatthew G Knepley   }
31159a42bb27SBarry Smith   PetscFunctionReturn(0);
31169a42bb27SBarry Smith }
31179a42bb27SBarry Smith 
31189a42bb27SBarry Smith /*@
31199a42bb27SBarry Smith     DMLocalToGlobalEnd - updates global vectors from local vectors
312047c6ae99SBarry Smith 
3121d083f849SBarry Smith     Neighbor-wise Collective on dm
312247c6ae99SBarry Smith 
312347c6ae99SBarry Smith     Input Parameters:
3124bb7acecfSBarry Smith +   dm - the `DM` object
3125f6813fd5SJed Brown .   l - the local vector
3126bb7acecfSBarry Smith .   mode - `INSERT_VALUES` or `ADD_VALUES`
3127f6813fd5SJed Brown -   g - the global vector
312847c6ae99SBarry Smith 
312901729b5cSPatrick Sanan     Level: intermediate
313047c6ae99SBarry Smith 
3131bb7acecfSBarry Smith     Note:
3132bb7acecfSBarry Smith     See `DMLocalToGlobalBegin()` for full details
3133bb7acecfSBarry Smith 
3134bb7acecfSBarry Smith .seealso: `DMLocalToGlobalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalEnd()`
313547c6ae99SBarry Smith 
313647c6ae99SBarry Smith @*/
3137d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalEnd(DM dm, Vec l, InsertMode mode, Vec g)
3138d71ae5a4SJacob Faibussowitsch {
31397128ae9fSMatthew G Knepley   PetscSF                 sf;
314084330215SMatthew G. Knepley   PetscSection            s;
3141d4d07f1eSToby Isaac   DMLocalToGlobalHookLink link;
3142ca3d3a14SMatthew G. Knepley   PetscBool               isInsert, transform;
314347c6ae99SBarry Smith 
314447c6ae99SBarry Smith   PetscFunctionBegin;
3145171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
31469566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
31479566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
31487128ae9fSMatthew G Knepley   switch (mode) {
31497128ae9fSMatthew G Knepley   case INSERT_VALUES:
3150d71ae5a4SJacob Faibussowitsch   case INSERT_ALL_VALUES:
3151d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_TRUE;
3152d71ae5a4SJacob Faibussowitsch     break;
31537128ae9fSMatthew G Knepley   case ADD_VALUES:
3154d71ae5a4SJacob Faibussowitsch   case ADD_ALL_VALUES:
3155d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_FALSE;
3156d71ae5a4SJacob Faibussowitsch     break;
3157d71ae5a4SJacob Faibussowitsch   default:
3158d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode);
31597128ae9fSMatthew G Knepley   }
316084330215SMatthew G. Knepley   if (sf && !isInsert) {
3161ae5cfb4aSMatthew G. Knepley     const PetscScalar *lArray;
3162ae5cfb4aSMatthew G. Knepley     PetscScalar       *gArray;
3163ca3d3a14SMatthew G. Knepley     Vec                tmpl;
316484330215SMatthew G. Knepley 
31659566063dSJacob Faibussowitsch     PetscCall(DMHasBasisTransform(dm, &transform));
3166ca3d3a14SMatthew G. Knepley     if (transform) {
31679566063dSJacob Faibussowitsch       PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
31689566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(tmpl, &lArray));
3169ca3d3a14SMatthew G. Knepley     } else {
31709566063dSJacob Faibussowitsch       PetscCall(VecGetArrayReadAndMemType(l, &lArray, NULL));
3171ca3d3a14SMatthew G. Knepley     }
31729566063dSJacob Faibussowitsch     PetscCall(VecGetArrayAndMemType(g, &gArray, NULL));
31739566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceEnd(sf, MPIU_SCALAR, lArray, gArray, MPIU_SUM));
3174ca3d3a14SMatthew G. Knepley     if (transform) {
31759566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(tmpl, &lArray));
31769566063dSJacob Faibussowitsch       PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
3177ca3d3a14SMatthew G. Knepley     } else {
31789566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayReadAndMemType(l, &lArray));
3179ca3d3a14SMatthew G. Knepley     }
31809566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayAndMemType(g, &gArray));
318184330215SMatthew G. Knepley   } else if (s && isInsert) {
31827128ae9fSMatthew G Knepley   } else {
31839566063dSJacob Faibussowitsch     PetscCall((*dm->ops->localtoglobalend)(dm, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g));
31847128ae9fSMatthew G Knepley   }
3185d4d07f1eSToby Isaac   for (link = dm->ltoghook; link; link = link->next) {
31869566063dSJacob Faibussowitsch     if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx));
3187d4d07f1eSToby Isaac   }
318847c6ae99SBarry Smith   PetscFunctionReturn(0);
318947c6ae99SBarry Smith }
319047c6ae99SBarry Smith 
3191f089877aSRichard Tran Mills /*@
3192bb7acecfSBarry Smith    DMLocalToLocalBegin - Begins the process of mapping values from a local vector (that include ghost points
3193bc0a1609SRichard Tran Mills    that contain irrelevant values) to another local vector where the ghost
3194bb7acecfSBarry Smith    points in the second are set correctly from values on other MPI ranks. Must be followed by `DMLocalToLocalEnd()`.
3195f089877aSRichard Tran Mills 
3196d083f849SBarry Smith    Neighbor-wise Collective on dm
3197f089877aSRichard Tran Mills 
3198f089877aSRichard Tran Mills    Input Parameters:
3199bb7acecfSBarry Smith +  dm - the `DM` object
3200bc0a1609SRichard Tran Mills .  g - the original local vector
3201bb7acecfSBarry Smith -  mode - one of `INSERT_VALUES` or `ADD_VALUES`
3202f089877aSRichard Tran Mills 
3203bc0a1609SRichard Tran Mills    Output Parameter:
3204bc0a1609SRichard Tran Mills .  l  - the local vector with correct ghost values
3205f089877aSRichard Tran Mills 
3206f089877aSRichard Tran Mills    Level: intermediate
3207f089877aSRichard Tran Mills 
3208bb7acecfSBarry Smith .seealso: `DMLocalToLocalEnd(), `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMLocalToLocalEnd()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`
3209f089877aSRichard Tran Mills 
3210f089877aSRichard Tran Mills @*/
3211d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l)
3212d71ae5a4SJacob Faibussowitsch {
3213f089877aSRichard Tran Mills   PetscFunctionBegin;
3214f089877aSRichard Tran Mills   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
32159f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(g, VEC_CLASSID, 2);
32169f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(l, VEC_CLASSID, 4);
32179f4ada15SMatthew G. Knepley   PetscUseTypeMethod(dm, localtolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
3218f089877aSRichard Tran Mills   PetscFunctionReturn(0);
3219f089877aSRichard Tran Mills }
3220f089877aSRichard Tran Mills 
3221f089877aSRichard Tran Mills /*@
3222bb7acecfSBarry Smith    DMLocalToLocalEnd - Maps from a local vector to another local vector where the ghost
3223bb7acecfSBarry Smith    points in the second are set correctly. Must be preceded by `DMLocalToLocalBegin()`.
3224f089877aSRichard Tran Mills 
3225d083f849SBarry Smith    Neighbor-wise Collective on dm
3226f089877aSRichard Tran Mills 
3227f089877aSRichard Tran Mills    Input Parameters:
3228bb7acecfSBarry Smith +  da - the `DM` object
3229bc0a1609SRichard Tran Mills .  g - the original local vector
3230bb7acecfSBarry Smith -  mode - one of `INSERT_VALUES` or `ADD_VALUES`
3231f089877aSRichard Tran Mills 
3232bc0a1609SRichard Tran Mills    Output Parameter:
3233bc0a1609SRichard Tran Mills .  l  - the local vector with correct ghost values
3234f089877aSRichard Tran Mills 
3235f089877aSRichard Tran Mills    Level: intermediate
3236f089877aSRichard Tran Mills 
3237bb7acecfSBarry Smith .seealso: `DMLocalToLocalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMLocalToLocalBegin()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`
3238f089877aSRichard Tran Mills 
3239f089877aSRichard Tran Mills @*/
3240d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l)
3241d71ae5a4SJacob Faibussowitsch {
3242f089877aSRichard Tran Mills   PetscFunctionBegin;
3243f089877aSRichard Tran Mills   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
32449f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(g, VEC_CLASSID, 2);
32459f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(l, VEC_CLASSID, 4);
32469f4ada15SMatthew G. Knepley   PetscUseTypeMethod(dm, localtolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
3247f089877aSRichard Tran Mills   PetscFunctionReturn(0);
3248f089877aSRichard Tran Mills }
3249f089877aSRichard Tran Mills 
325047c6ae99SBarry Smith /*@
3251bb7acecfSBarry Smith     DMCoarsen - Coarsens a `DM` object using a standard, non-adaptive coarsening of the underlying mesh
325247c6ae99SBarry Smith 
3253d083f849SBarry Smith     Collective on dm
325447c6ae99SBarry Smith 
3255d8d19677SJose E. Roman     Input Parameters:
3256bb7acecfSBarry Smith +   dm - the `DM` object
3257bb7acecfSBarry Smith -   comm - the communicator to contain the new `DM` object (or MPI_COMM_NULL)
325847c6ae99SBarry Smith 
325947c6ae99SBarry Smith     Output Parameter:
3260bb7acecfSBarry Smith .   dmc - the coarsened `DM`
326147c6ae99SBarry Smith 
326247c6ae99SBarry Smith     Level: developer
326347c6ae99SBarry Smith 
3264bb7acecfSBarry Smith .seealso: `DM`, `DMRefine()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
326547c6ae99SBarry Smith 
326647c6ae99SBarry Smith @*/
3267d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsen(DM dm, MPI_Comm comm, DM *dmc)
3268d71ae5a4SJacob Faibussowitsch {
3269b17ce1afSJed Brown   DMCoarsenHookLink link;
327047c6ae99SBarry Smith 
327147c6ae99SBarry Smith   PetscFunctionBegin;
3272171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
32739566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_Coarsen, dm, 0, 0, 0));
3274dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, coarsen, comm, dmc);
3275b9d85ea2SLisandro Dalcin   if (*dmc) {
3276a3574896SRichard Tran Mills     (*dmc)->bind_below = dm->bind_below; /* Propagate this from parent DM; otherwise -dm_bind_below will be useless for multigrid cases. */
32779566063dSJacob Faibussowitsch     PetscCall(DMSetCoarseDM(dm, *dmc));
327843842a1eSJed Brown     (*dmc)->ops->creatematrix = dm->ops->creatematrix;
32799566063dSJacob Faibussowitsch     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmc));
3280644e2e5bSBarry Smith     (*dmc)->ctx       = dm->ctx;
32810598a293SJed Brown     (*dmc)->levelup   = dm->levelup;
3282656b349aSBarry Smith     (*dmc)->leveldown = dm->leveldown + 1;
32839566063dSJacob Faibussowitsch     PetscCall(DMSetMatType(*dmc, dm->mattype));
3284b17ce1afSJed Brown     for (link = dm->coarsenhook; link; link = link->next) {
32859566063dSJacob Faibussowitsch       if (link->coarsenhook) PetscCall((*link->coarsenhook)(dm, *dmc, link->ctx));
3286b17ce1afSJed Brown     }
3287b9d85ea2SLisandro Dalcin   }
32889566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_Coarsen, dm, 0, 0, 0));
32897a8be351SBarry Smith   PetscCheck(*dmc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "NULL coarse mesh produced");
3290b17ce1afSJed Brown   PetscFunctionReturn(0);
3291b17ce1afSJed Brown }
3292b17ce1afSJed Brown 
3293bb9467b5SJed Brown /*@C
3294b17ce1afSJed Brown    DMCoarsenHookAdd - adds a callback to be run when restricting a nonlinear problem to the coarse grid
3295b17ce1afSJed Brown 
3296bb7acecfSBarry Smith    Logically Collective on fine
3297b17ce1afSJed Brown 
32984165533cSJose E. Roman    Input Parameters:
3299bb7acecfSBarry Smith +  fine - `DM` on which to run a hook when restricting to a coarser level
3300b17ce1afSJed Brown .  coarsenhook - function to run when setting up a coarser level
3301bb7acecfSBarry Smith .  restricthook - function to run to update data on coarser levels (called once per `SNESSolve()`)
33020298fd71SBarry Smith -  ctx - [optional] user-defined context for provide data for the hooks (may be NULL)
3303b17ce1afSJed Brown 
3304b17ce1afSJed Brown    Calling sequence of coarsenhook:
3305b17ce1afSJed Brown $    coarsenhook(DM fine,DM coarse,void *ctx);
3306b17ce1afSJed Brown 
3307bb7acecfSBarry Smith +  fine - fine level `DM`
3308bb7acecfSBarry Smith .  coarse - coarse level `DM` to restrict problem to
3309b17ce1afSJed Brown -  ctx - optional user-defined function context
3310b17ce1afSJed Brown 
3311b17ce1afSJed Brown    Calling sequence for restricthook:
3312c833c3b5SJed Brown $    restricthook(DM fine,Mat mrestrict,Vec rscale,Mat inject,DM coarse,void *ctx)
3313bb7acecfSBarry Smith $
3314bb7acecfSBarry Smith +  fine - fine level `DM`
3315bb7acecfSBarry Smith .  mrestrict - matrix restricting a fine-level solution to the coarse grid, usually the transpose of the interpolation
3316c833c3b5SJed Brown .  rscale - scaling vector for restriction
3317c833c3b5SJed Brown .  inject - matrix restricting by injection
3318b17ce1afSJed Brown .  coarse - coarse level DM to update
3319b17ce1afSJed Brown -  ctx - optional user-defined function context
3320b17ce1afSJed Brown 
3321b17ce1afSJed Brown    Level: advanced
3322b17ce1afSJed Brown 
3323b17ce1afSJed Brown    Notes:
3324bb7acecfSBarry Smith    This function is only needed if auxiliary data, attached to the `DM` with `PetscObjectCompose()`, needs to be set up or passed from the fine `DM` to the coarse `DM`.
3325b17ce1afSJed Brown 
3326b17ce1afSJed Brown    If this function is called multiple times, the hooks will be run in the order they are added.
3327b17ce1afSJed Brown 
3328b17ce1afSJed Brown    In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to
3329bb7acecfSBarry Smith    extract the finest level information from its context (instead of from the `SNES`).
3330b17ce1afSJed Brown 
3331bb7acecfSBarry Smith    The hooks are automatically called by `DMRestrict()`
3332bb7acecfSBarry Smith 
3333bb7acecfSBarry Smith    Fortran Note:
3334bb7acecfSBarry Smith    This function is not available from Fortran.
3335bb9467b5SJed Brown 
3336db781477SPatrick Sanan .seealso: `DMCoarsenHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
3337b17ce1afSJed Brown @*/
3338d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookAdd(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx)
3339d71ae5a4SJacob Faibussowitsch {
3340b17ce1afSJed Brown   DMCoarsenHookLink link, *p;
3341b17ce1afSJed Brown 
3342b17ce1afSJed Brown   PetscFunctionBegin;
3343b17ce1afSJed Brown   PetscValidHeaderSpecific(fine, DM_CLASSID, 1);
33441e3d8eccSJed Brown   for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
33451e3d8eccSJed Brown     if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(0);
33461e3d8eccSJed Brown   }
33479566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
3348b17ce1afSJed Brown   link->coarsenhook  = coarsenhook;
3349b17ce1afSJed Brown   link->restricthook = restricthook;
3350b17ce1afSJed Brown   link->ctx          = ctx;
33510298fd71SBarry Smith   link->next         = NULL;
3352b17ce1afSJed Brown   *p                 = link;
3353b17ce1afSJed Brown   PetscFunctionReturn(0);
3354b17ce1afSJed Brown }
3355b17ce1afSJed Brown 
3356dc822a44SJed Brown /*@C
3357bb7acecfSBarry Smith    DMCoarsenHookRemove - remove a callback set with `DMCoarsenHookAdd()`
3358dc822a44SJed Brown 
3359bb7acecfSBarry Smith    Logically Collective on fine
3360dc822a44SJed Brown 
33614165533cSJose E. Roman    Input Parameters:
3362bb7acecfSBarry Smith +  fine - `DM` on which to run a hook when restricting to a coarser level
3363dc822a44SJed Brown .  coarsenhook - function to run when setting up a coarser level
3364bb7acecfSBarry Smith .  restricthook - function to run to update data on coarser levels
3365dc822a44SJed Brown -  ctx - [optional] user-defined context for provide data for the hooks (may be NULL)
3366dc822a44SJed Brown 
3367dc822a44SJed Brown    Level: advanced
3368dc822a44SJed Brown 
3369bb7acecfSBarry Smith    Note:
3370dc822a44SJed Brown    This function does nothing if the hook is not in the list.
3371dc822a44SJed Brown 
3372bb7acecfSBarry Smith    Fortran Note:
3373bb7acecfSBarry Smith    This function is not available from Fortran.
3374dc822a44SJed Brown 
3375db781477SPatrick Sanan .seealso: `DMCoarsenHookAdd()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
3376dc822a44SJed Brown @*/
3377d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookRemove(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx)
3378d71ae5a4SJacob Faibussowitsch {
3379dc822a44SJed Brown   DMCoarsenHookLink link, *p;
3380dc822a44SJed Brown 
3381dc822a44SJed Brown   PetscFunctionBegin;
3382dc822a44SJed Brown   PetscValidHeaderSpecific(fine, DM_CLASSID, 1);
3383dc822a44SJed Brown   for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Search the list of current hooks */
3384dc822a44SJed Brown     if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) {
3385dc822a44SJed Brown       link = *p;
3386dc822a44SJed Brown       *p   = link->next;
33879566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
3388dc822a44SJed Brown       break;
3389dc822a44SJed Brown     }
3390dc822a44SJed Brown   }
3391dc822a44SJed Brown   PetscFunctionReturn(0);
3392dc822a44SJed Brown }
3393dc822a44SJed Brown 
3394b17ce1afSJed Brown /*@
3395bb7acecfSBarry Smith    DMRestrict - restricts user-defined problem data to a coarser `DM` by running hooks registered by `DMCoarsenHookAdd()`
3396b17ce1afSJed Brown 
3397b17ce1afSJed Brown    Collective if any hooks are
3398b17ce1afSJed Brown 
33994165533cSJose E. Roman    Input Parameters:
3400bb7acecfSBarry Smith +  fine - finer `DM` from which the data is obtained
3401bb7acecfSBarry Smith .  restrct - restriction matrix, apply using `MatRestrict()`, usually the transpose of the interpolation
3402e91eccc2SStefano Zampini .  rscale - scaling vector for restriction
3403bb7acecfSBarry Smith .  inject - injection matrix, also use `MatRestrict()`
3404e91eccc2SStefano Zampini -  coarse - coarser DM to update
3405b17ce1afSJed Brown 
3406b17ce1afSJed Brown    Level: developer
3407b17ce1afSJed Brown 
3408bb7acecfSBarry Smith    Developer Note:
3409bb7acecfSBarry Smith    Though this routine is called `DMRestrict()` the hooks are added with `DMCoarsenHookAdd()`, a consistent terminology would be better
3410bb7acecfSBarry Smith 
3411bb7acecfSBarry Smith .seealso: `DMCoarsenHookAdd()`, `MatRestrict()`, `DMInterpolate()`, `DMRefineHookAdd()`
3412b17ce1afSJed Brown @*/
3413d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestrict(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse)
3414d71ae5a4SJacob Faibussowitsch {
3415b17ce1afSJed Brown   DMCoarsenHookLink link;
3416b17ce1afSJed Brown 
3417b17ce1afSJed Brown   PetscFunctionBegin;
3418b17ce1afSJed Brown   for (link = fine->coarsenhook; link; link = link->next) {
34191baa6e33SBarry Smith     if (link->restricthook) PetscCall((*link->restricthook)(fine, restrct, rscale, inject, coarse, link->ctx));
3420b17ce1afSJed Brown   }
342147c6ae99SBarry Smith   PetscFunctionReturn(0);
342247c6ae99SBarry Smith }
342347c6ae99SBarry Smith 
3424bb9467b5SJed Brown /*@C
3425be081cd6SPeter Brune    DMSubDomainHookAdd - adds a callback to be run when restricting a problem to the coarse grid
34265dbd56e3SPeter Brune 
3427d083f849SBarry Smith    Logically Collective on global
34285dbd56e3SPeter Brune 
34294165533cSJose E. Roman    Input Parameters:
3430bb7acecfSBarry Smith +  global - global `DM`
3431bb7acecfSBarry Smith .  ddhook - function to run to pass data to the decomposition `DM` upon its creation
34325dbd56e3SPeter Brune .  restricthook - function to run to update data on block solve (at the beginning of the block solve)
34330298fd71SBarry Smith -  ctx - [optional] user-defined context for provide data for the hooks (may be NULL)
34345dbd56e3SPeter Brune 
3435ec4806b8SPeter Brune    Calling sequence for ddhook:
3436ec4806b8SPeter Brune $    ddhook(DM global,DM block,void *ctx)
3437ec4806b8SPeter Brune 
3438bb7acecfSBarry Smith +  global - global `DM`
3439bb7acecfSBarry Smith .  block  - block `DM`
3440ec4806b8SPeter Brune -  ctx - optional user-defined function context
3441ec4806b8SPeter Brune 
34425dbd56e3SPeter Brune    Calling sequence for restricthook:
3443ec4806b8SPeter Brune $    restricthook(DM global,VecScatter out,VecScatter in,DM block,void *ctx)
34445dbd56e3SPeter Brune 
3445bb7acecfSBarry Smith +  global - global `DM`
34465dbd56e3SPeter Brune .  out    - scatter to the outer (with ghost and overlap points) block vector
34475dbd56e3SPeter Brune .  in     - scatter to block vector values only owned locally
3448bb7acecfSBarry Smith .  block  - block `DM`
34495dbd56e3SPeter Brune -  ctx - optional user-defined function context
34505dbd56e3SPeter Brune 
34515dbd56e3SPeter Brune    Level: advanced
34525dbd56e3SPeter Brune 
34535dbd56e3SPeter Brune    Notes:
3454bb7acecfSBarry Smith    This function is only needed if auxiliary data needs to be set up on subdomain `DM`s.
34555dbd56e3SPeter Brune 
34565dbd56e3SPeter Brune    If this function is called multiple times, the hooks will be run in the order they are added.
34575dbd56e3SPeter Brune 
34585dbd56e3SPeter Brune    In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to
3459bb7acecfSBarry Smith    extract the global information from its context (instead of from the `SNES`).
34605dbd56e3SPeter Brune 
3461bb7acecfSBarry Smith    Fortran Note:
3462bb7acecfSBarry Smith    This function is not available from Fortran.
3463bb9467b5SJed Brown 
3464bb7acecfSBarry Smith .seealso: `DMSubDomainHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
34655dbd56e3SPeter Brune @*/
3466d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookAdd(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx)
3467d71ae5a4SJacob Faibussowitsch {
3468be081cd6SPeter Brune   DMSubDomainHookLink link, *p;
34695dbd56e3SPeter Brune 
34705dbd56e3SPeter Brune   PetscFunctionBegin;
34715dbd56e3SPeter Brune   PetscValidHeaderSpecific(global, DM_CLASSID, 1);
3472b3a6b972SJed Brown   for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
3473b3a6b972SJed Brown     if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(0);
3474b3a6b972SJed Brown   }
34759566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
34765dbd56e3SPeter Brune   link->restricthook = restricthook;
3477be081cd6SPeter Brune   link->ddhook       = ddhook;
34785dbd56e3SPeter Brune   link->ctx          = ctx;
34790298fd71SBarry Smith   link->next         = NULL;
34805dbd56e3SPeter Brune   *p                 = link;
34815dbd56e3SPeter Brune   PetscFunctionReturn(0);
34825dbd56e3SPeter Brune }
34835dbd56e3SPeter Brune 
3484b3a6b972SJed Brown /*@C
3485b3a6b972SJed Brown    DMSubDomainHookRemove - remove a callback from the list to be run when restricting a problem to the coarse grid
3486b3a6b972SJed Brown 
3487bb7acecfSBarry Smith    Logically Collective on global
3488b3a6b972SJed Brown 
34894165533cSJose E. Roman    Input Parameters:
3490bb7acecfSBarry Smith +  global - global `DM`
3491bb7acecfSBarry Smith .  ddhook - function to run to pass data to the decomposition `DM` upon its creation
3492b3a6b972SJed Brown .  restricthook - function to run to update data on block solve (at the beginning of the block solve)
3493b3a6b972SJed Brown -  ctx - [optional] user-defined context for provide data for the hooks (may be NULL)
3494b3a6b972SJed Brown 
3495b3a6b972SJed Brown    Level: advanced
3496b3a6b972SJed Brown 
3497bb7acecfSBarry Smith    Fortran Note:
3498bb7acecfSBarry Smith    This function is not available from Fortran.
3499b3a6b972SJed Brown 
3500db781477SPatrick Sanan .seealso: `DMSubDomainHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
3501b3a6b972SJed Brown @*/
3502d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookRemove(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx)
3503d71ae5a4SJacob Faibussowitsch {
3504b3a6b972SJed Brown   DMSubDomainHookLink link, *p;
3505b3a6b972SJed Brown 
3506b3a6b972SJed Brown   PetscFunctionBegin;
3507b3a6b972SJed Brown   PetscValidHeaderSpecific(global, DM_CLASSID, 1);
3508b3a6b972SJed Brown   for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Search the list of current hooks */
3509b3a6b972SJed Brown     if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) {
3510b3a6b972SJed Brown       link = *p;
3511b3a6b972SJed Brown       *p   = link->next;
35129566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
3513b3a6b972SJed Brown       break;
3514b3a6b972SJed Brown     }
3515b3a6b972SJed Brown   }
3516b3a6b972SJed Brown   PetscFunctionReturn(0);
3517b3a6b972SJed Brown }
3518b3a6b972SJed Brown 
35195dbd56e3SPeter Brune /*@
3520bb7acecfSBarry Smith    DMSubDomainRestrict - restricts user-defined problem data to a block `DM` by running hooks registered by `DMSubDomainHookAdd()`
35215dbd56e3SPeter Brune 
35225dbd56e3SPeter Brune    Collective if any hooks are
35235dbd56e3SPeter Brune 
35244165533cSJose E. Roman    Input Parameters:
3525bb7acecfSBarry Smith +  fine - finer `DM` to use as a base
3526be081cd6SPeter Brune .  oscatter - scatter from domain global vector filling subdomain global vector with overlap
3527be081cd6SPeter Brune .  gscatter - scatter from domain global vector filling subdomain local vector with ghosts
3528bb7acecfSBarry Smith -  coarse - coarser `DM` to update
35295dbd56e3SPeter Brune 
35305dbd56e3SPeter Brune    Level: developer
35315dbd56e3SPeter Brune 
3532db781477SPatrick Sanan .seealso: `DMCoarsenHookAdd()`, `MatRestrict()`
35335dbd56e3SPeter Brune @*/
3534d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainRestrict(DM global, VecScatter oscatter, VecScatter gscatter, DM subdm)
3535d71ae5a4SJacob Faibussowitsch {
3536be081cd6SPeter Brune   DMSubDomainHookLink link;
35375dbd56e3SPeter Brune 
35385dbd56e3SPeter Brune   PetscFunctionBegin;
3539be081cd6SPeter Brune   for (link = global->subdomainhook; link; link = link->next) {
35401baa6e33SBarry Smith     if (link->restricthook) PetscCall((*link->restricthook)(global, oscatter, gscatter, subdm, link->ctx));
35415dbd56e3SPeter Brune   }
35425dbd56e3SPeter Brune   PetscFunctionReturn(0);
35435dbd56e3SPeter Brune }
35445dbd56e3SPeter Brune 
35455fe1f584SPeter Brune /*@
3546bb7acecfSBarry Smith     DMGetCoarsenLevel - Gets the number of coarsenings that have generated this `DM`.
35475fe1f584SPeter Brune 
35485fe1f584SPeter Brune     Not Collective
35495fe1f584SPeter Brune 
35505fe1f584SPeter Brune     Input Parameter:
3551bb7acecfSBarry Smith .   dm - the `DM` object
35525fe1f584SPeter Brune 
35535fe1f584SPeter Brune     Output Parameter:
35546a7d9d85SPeter Brune .   level - number of coarsenings
35555fe1f584SPeter Brune 
35565fe1f584SPeter Brune     Level: developer
35575fe1f584SPeter Brune 
3558bb7acecfSBarry Smith .seealso: `DMCoarsen()`, `DMSetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
35595fe1f584SPeter Brune 
35605fe1f584SPeter Brune @*/
3561d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarsenLevel(DM dm, PetscInt *level)
3562d71ae5a4SJacob Faibussowitsch {
35635fe1f584SPeter Brune   PetscFunctionBegin;
35645fe1f584SPeter Brune   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3565b9d85ea2SLisandro Dalcin   PetscValidIntPointer(level, 2);
35665fe1f584SPeter Brune   *level = dm->leveldown;
35675fe1f584SPeter Brune   PetscFunctionReturn(0);
35685fe1f584SPeter Brune }
35695fe1f584SPeter Brune 
35709a64c4a8SMatthew G. Knepley /*@
3571bb7acecfSBarry Smith     DMSetCoarsenLevel - Sets the number of coarsenings that have generated this `DM`.
35729a64c4a8SMatthew G. Knepley 
3573bb7acecfSBarry Smith     Collective on dm
35749a64c4a8SMatthew G. Knepley 
35759a64c4a8SMatthew G. Knepley     Input Parameters:
3576bb7acecfSBarry Smith +   dm - the `DM` object
35779a64c4a8SMatthew G. Knepley -   level - number of coarsenings
35789a64c4a8SMatthew G. Knepley 
35799a64c4a8SMatthew G. Knepley     Level: developer
35809a64c4a8SMatthew G. Knepley 
3581bb7acecfSBarry Smith     Note:
3582bb7acecfSBarry Smith     This is rarely used directly, the information is automatically set when a `DM` is created with `DMCoarsen()`
3583bb7acecfSBarry Smith 
3584bb7acecfSBarry Smith .seealso: `DMSetCoarsenLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
35859a64c4a8SMatthew G. Knepley @*/
3586d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarsenLevel(DM dm, PetscInt level)
3587d71ae5a4SJacob Faibussowitsch {
35889a64c4a8SMatthew G. Knepley   PetscFunctionBegin;
35899a64c4a8SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
35909a64c4a8SMatthew G. Knepley   dm->leveldown = level;
35919a64c4a8SMatthew G. Knepley   PetscFunctionReturn(0);
35929a64c4a8SMatthew G. Knepley }
35939a64c4a8SMatthew G. Knepley 
359447c6ae99SBarry Smith /*@C
3595bb7acecfSBarry Smith     DMRefineHierarchy - Refines a `DM` object, all levels at once
359647c6ae99SBarry Smith 
3597d083f849SBarry Smith     Collective on dm
359847c6ae99SBarry Smith 
3599d8d19677SJose E. Roman     Input Parameters:
3600bb7acecfSBarry Smith +   dm - the `DM` object
360147c6ae99SBarry Smith -   nlevels - the number of levels of refinement
360247c6ae99SBarry Smith 
360347c6ae99SBarry Smith     Output Parameter:
3604bb7acecfSBarry Smith .   dmf - the refined `DM` hierarchy
360547c6ae99SBarry Smith 
360647c6ae99SBarry Smith     Level: developer
360747c6ae99SBarry Smith 
3608bb7acecfSBarry Smith .seealso: `DMCoarsen()`, `DMCoarsenHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
360947c6ae99SBarry Smith 
361047c6ae99SBarry Smith @*/
3611d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHierarchy(DM dm, PetscInt nlevels, DM dmf[])
3612d71ae5a4SJacob Faibussowitsch {
361347c6ae99SBarry Smith   PetscFunctionBegin;
3614171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36157a8be351SBarry Smith   PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative");
361647c6ae99SBarry Smith   if (nlevels == 0) PetscFunctionReturn(0);
3617b9d85ea2SLisandro Dalcin   PetscValidPointer(dmf, 3);
361847c6ae99SBarry Smith   if (dm->ops->refinehierarchy) {
3619dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm, refinehierarchy, nlevels, dmf);
362047c6ae99SBarry Smith   } else if (dm->ops->refine) {
362147c6ae99SBarry Smith     PetscInt i;
362247c6ae99SBarry Smith 
36239566063dSJacob Faibussowitsch     PetscCall(DMRefine(dm, PetscObjectComm((PetscObject)dm), &dmf[0]));
362448a46eb9SPierre Jolivet     for (i = 1; i < nlevels; i++) PetscCall(DMRefine(dmf[i - 1], PetscObjectComm((PetscObject)dm), &dmf[i]));
3625ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No RefineHierarchy for this DM yet");
362647c6ae99SBarry Smith   PetscFunctionReturn(0);
362747c6ae99SBarry Smith }
362847c6ae99SBarry Smith 
362947c6ae99SBarry Smith /*@C
3630bb7acecfSBarry Smith     DMCoarsenHierarchy - Coarsens a `DM` object, all levels at once
363147c6ae99SBarry Smith 
3632d083f849SBarry Smith     Collective on dm
363347c6ae99SBarry Smith 
3634d8d19677SJose E. Roman     Input Parameters:
3635bb7acecfSBarry Smith +   dm - the `DM` object
363647c6ae99SBarry Smith -   nlevels - the number of levels of coarsening
363747c6ae99SBarry Smith 
363847c6ae99SBarry Smith     Output Parameter:
3639bb7acecfSBarry Smith .   dmc - the coarsened `DM` hierarchy
364047c6ae99SBarry Smith 
364147c6ae99SBarry Smith     Level: developer
364247c6ae99SBarry Smith 
3643bb7acecfSBarry Smith .seealso: `DMCoarsen()`, `DMRefineHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
364447c6ae99SBarry Smith 
364547c6ae99SBarry Smith @*/
3646d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHierarchy(DM dm, PetscInt nlevels, DM dmc[])
3647d71ae5a4SJacob Faibussowitsch {
364847c6ae99SBarry Smith   PetscFunctionBegin;
3649171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36507a8be351SBarry Smith   PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative");
365147c6ae99SBarry Smith   if (nlevels == 0) PetscFunctionReturn(0);
365247c6ae99SBarry Smith   PetscValidPointer(dmc, 3);
365347c6ae99SBarry Smith   if (dm->ops->coarsenhierarchy) {
3654dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm, coarsenhierarchy, nlevels, dmc);
365547c6ae99SBarry Smith   } else if (dm->ops->coarsen) {
365647c6ae99SBarry Smith     PetscInt i;
365747c6ae99SBarry Smith 
36589566063dSJacob Faibussowitsch     PetscCall(DMCoarsen(dm, PetscObjectComm((PetscObject)dm), &dmc[0]));
365948a46eb9SPierre Jolivet     for (i = 1; i < nlevels; i++) PetscCall(DMCoarsen(dmc[i - 1], PetscObjectComm((PetscObject)dm), &dmc[i]));
3660ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No CoarsenHierarchy for this DM yet");
366147c6ae99SBarry Smith   PetscFunctionReturn(0);
366247c6ae99SBarry Smith }
366347c6ae99SBarry Smith 
36641a266240SBarry Smith /*@C
3665bb7acecfSBarry Smith     DMSetApplicationContextDestroy - Sets a user function that will be called to destroy the application context when the `DM` is destroyed
36661a266240SBarry Smith 
3667bb7acecfSBarry Smith     Logically Collective if the function is collective
36681a266240SBarry Smith 
36691a266240SBarry Smith     Input Parameters:
3670bb7acecfSBarry Smith +   dm - the `DM` object
36711a266240SBarry Smith -   destroy - the destroy function
36721a266240SBarry Smith 
36731a266240SBarry Smith     Level: intermediate
36741a266240SBarry Smith 
3675bb7acecfSBarry Smith .seealso: `DMSetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
36761a266240SBarry Smith 
3677f07f9ceaSJed Brown @*/
3678d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContextDestroy(DM dm, PetscErrorCode (*destroy)(void **))
3679d71ae5a4SJacob Faibussowitsch {
36801a266240SBarry Smith   PetscFunctionBegin;
3681171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36821a266240SBarry Smith   dm->ctxdestroy = destroy;
36831a266240SBarry Smith   PetscFunctionReturn(0);
36841a266240SBarry Smith }
36851a266240SBarry Smith 
3686b07ff414SBarry Smith /*@
3687bb7acecfSBarry Smith     DMSetApplicationContext - Set a user context into a `DM` object
368847c6ae99SBarry Smith 
368947c6ae99SBarry Smith     Not Collective
369047c6ae99SBarry Smith 
369147c6ae99SBarry Smith     Input Parameters:
3692bb7acecfSBarry Smith +   dm - the `DM` object
369347c6ae99SBarry Smith -   ctx - the user context
369447c6ae99SBarry Smith 
369547c6ae99SBarry Smith     Level: intermediate
369647c6ae99SBarry Smith 
3697bb7acecfSBarry Smith     Note:
3698bb7acecfSBarry Smith     A user context is a way to pass problem specific information that is accessable whenever the `DM` is available
3699bb7acecfSBarry Smith 
3700bb7acecfSBarry Smith .seealso: `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
370147c6ae99SBarry Smith 
370247c6ae99SBarry Smith @*/
3703d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContext(DM dm, void *ctx)
3704d71ae5a4SJacob Faibussowitsch {
370547c6ae99SBarry Smith   PetscFunctionBegin;
3706171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
370747c6ae99SBarry Smith   dm->ctx = ctx;
370847c6ae99SBarry Smith   PetscFunctionReturn(0);
370947c6ae99SBarry Smith }
371047c6ae99SBarry Smith 
371147c6ae99SBarry Smith /*@
3712bb7acecfSBarry Smith     DMGetApplicationContext - Gets a user context from a `DM` object
371347c6ae99SBarry Smith 
371447c6ae99SBarry Smith     Not Collective
371547c6ae99SBarry Smith 
371647c6ae99SBarry Smith     Input Parameter:
3717bb7acecfSBarry Smith .   dm - the `DM` object
371847c6ae99SBarry Smith 
371947c6ae99SBarry Smith     Output Parameter:
372047c6ae99SBarry Smith .   ctx - the user context
372147c6ae99SBarry Smith 
372247c6ae99SBarry Smith     Level: intermediate
372347c6ae99SBarry Smith 
3724bb7acecfSBarry Smith     Note:
3725bb7acecfSBarry Smith     A user context is a way to pass problem specific information that is accessable whenever the `DM` is available
3726bb7acecfSBarry Smith 
3727bb7acecfSBarry Smith .seealso: `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
372847c6ae99SBarry Smith 
372947c6ae99SBarry Smith @*/
3730d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetApplicationContext(DM dm, void *ctx)
3731d71ae5a4SJacob Faibussowitsch {
373247c6ae99SBarry Smith   PetscFunctionBegin;
3733171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
37341b2093e4SBarry Smith   *(void **)ctx = dm->ctx;
373547c6ae99SBarry Smith   PetscFunctionReturn(0);
373647c6ae99SBarry Smith }
373747c6ae99SBarry Smith 
373808da532bSDmitry Karpeev /*@C
3739bb7acecfSBarry Smith     DMSetVariableBounds - sets a function to compute the lower and upper bound vectors for `SNESVI`.
374008da532bSDmitry Karpeev 
3741d083f849SBarry Smith     Logically Collective on dm
374208da532bSDmitry Karpeev 
3743d8d19677SJose E. Roman     Input Parameters:
374408da532bSDmitry Karpeev +   dm - the DM object
37450298fd71SBarry Smith -   f - the function that computes variable bounds used by SNESVI (use NULL to cancel a previous function that was set)
374608da532bSDmitry Karpeev 
374708da532bSDmitry Karpeev     Level: intermediate
374808da532bSDmitry Karpeev 
3749bb7acecfSBarry Smith .seealso: `DMComputeVariableBounds()`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`,
3750db781477SPatrick Sanan          `DMSetJacobian()`
375108da532bSDmitry Karpeev 
375208da532bSDmitry Karpeev @*/
3753d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVariableBounds(DM dm, PetscErrorCode (*f)(DM, Vec, Vec))
3754d71ae5a4SJacob Faibussowitsch {
375508da532bSDmitry Karpeev   PetscFunctionBegin;
37565a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
375708da532bSDmitry Karpeev   dm->ops->computevariablebounds = f;
375808da532bSDmitry Karpeev   PetscFunctionReturn(0);
375908da532bSDmitry Karpeev }
376008da532bSDmitry Karpeev 
376108da532bSDmitry Karpeev /*@
3762bb7acecfSBarry Smith     DMHasVariableBounds - does the `DM` object have a variable bounds function?
376308da532bSDmitry Karpeev 
376408da532bSDmitry Karpeev     Not Collective
376508da532bSDmitry Karpeev 
376608da532bSDmitry Karpeev     Input Parameter:
3767bb7acecfSBarry Smith .   dm - the `DM` object to destroy
376808da532bSDmitry Karpeev 
376908da532bSDmitry Karpeev     Output Parameter:
3770bb7acecfSBarry Smith .   flg - `PETSC_TRUE` if the variable bounds function exists
377108da532bSDmitry Karpeev 
377208da532bSDmitry Karpeev     Level: developer
377308da532bSDmitry Karpeev 
3774bb7acecfSBarry Smith .seealso: `DMComputeVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
377508da532bSDmitry Karpeev 
377608da532bSDmitry Karpeev @*/
3777d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasVariableBounds(DM dm, PetscBool *flg)
3778d71ae5a4SJacob Faibussowitsch {
377908da532bSDmitry Karpeev   PetscFunctionBegin;
37805a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3781534a8f05SLisandro Dalcin   PetscValidBoolPointer(flg, 2);
378208da532bSDmitry Karpeev   *flg = (dm->ops->computevariablebounds) ? PETSC_TRUE : PETSC_FALSE;
378308da532bSDmitry Karpeev   PetscFunctionReturn(0);
378408da532bSDmitry Karpeev }
378508da532bSDmitry Karpeev 
378608da532bSDmitry Karpeev /*@C
3787bb7acecfSBarry Smith     DMComputeVariableBounds - compute variable bounds used by `SNESVI`.
378808da532bSDmitry Karpeev 
3789d083f849SBarry Smith     Logically Collective on dm
379008da532bSDmitry Karpeev 
3791f899ff85SJose E. Roman     Input Parameter:
3792bb7acecfSBarry Smith .   dm - the `DM` object
379308da532bSDmitry Karpeev 
379408da532bSDmitry Karpeev     Output parameters:
379508da532bSDmitry Karpeev +   xl - lower bound
379608da532bSDmitry Karpeev -   xu - upper bound
379708da532bSDmitry Karpeev 
3798907376e6SBarry Smith     Level: advanced
3799907376e6SBarry Smith 
380095452b02SPatrick Sanan     Notes:
380195452b02SPatrick Sanan     This is generally not called by users. It calls the function provided by the user with DMSetVariableBounds()
380208da532bSDmitry Karpeev 
3803bb7acecfSBarry Smith .seealso: `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
380408da532bSDmitry Karpeev 
380508da532bSDmitry Karpeev @*/
3806d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeVariableBounds(DM dm, Vec xl, Vec xu)
3807d71ae5a4SJacob Faibussowitsch {
380808da532bSDmitry Karpeev   PetscFunctionBegin;
38095a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
381008da532bSDmitry Karpeev   PetscValidHeaderSpecific(xl, VEC_CLASSID, 2);
38115a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(xu, VEC_CLASSID, 3);
3812dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, computevariablebounds, xl, xu);
381308da532bSDmitry Karpeev   PetscFunctionReturn(0);
381408da532bSDmitry Karpeev }
381508da532bSDmitry Karpeev 
3816b0ae01b7SPeter Brune /*@
3817bb7acecfSBarry Smith     DMHasColoring - does the `DM` object have a method of providing a coloring?
3818b0ae01b7SPeter Brune 
3819b0ae01b7SPeter Brune     Not Collective
3820b0ae01b7SPeter Brune 
3821b0ae01b7SPeter Brune     Input Parameter:
3822b0ae01b7SPeter Brune .   dm - the DM object
3823b0ae01b7SPeter Brune 
3824b0ae01b7SPeter Brune     Output Parameter:
3825bb7acecfSBarry Smith .   flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateColoring()`.
3826b0ae01b7SPeter Brune 
3827b0ae01b7SPeter Brune     Level: developer
3828b0ae01b7SPeter Brune 
3829bb7acecfSBarry Smith .seealso: `DMCreateColoring()`
3830b0ae01b7SPeter Brune 
3831b0ae01b7SPeter Brune @*/
3832d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasColoring(DM dm, PetscBool *flg)
3833d71ae5a4SJacob Faibussowitsch {
3834b0ae01b7SPeter Brune   PetscFunctionBegin;
38355a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3836534a8f05SLisandro Dalcin   PetscValidBoolPointer(flg, 2);
3837b0ae01b7SPeter Brune   *flg = (dm->ops->getcoloring) ? PETSC_TRUE : PETSC_FALSE;
3838b0ae01b7SPeter Brune   PetscFunctionReturn(0);
3839b0ae01b7SPeter Brune }
3840b0ae01b7SPeter Brune 
38413ad4599aSBarry Smith /*@
3842bb7acecfSBarry Smith     DMHasCreateRestriction - does the `DM` object have a method of providing a restriction?
38433ad4599aSBarry Smith 
38443ad4599aSBarry Smith     Not Collective
38453ad4599aSBarry Smith 
38463ad4599aSBarry Smith     Input Parameter:
3847bb7acecfSBarry Smith .   dm - the `DM` object
38483ad4599aSBarry Smith 
38493ad4599aSBarry Smith     Output Parameter:
3850bb7acecfSBarry Smith .   flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateRestriction()`.
38513ad4599aSBarry Smith 
38523ad4599aSBarry Smith     Level: developer
38533ad4599aSBarry Smith 
3854bb7acecfSBarry Smith .seealso: `DMCreateRestriction()`, `DMHasCreateInterpolation()`, `DMHasCreateInjection()`
38553ad4599aSBarry Smith 
38563ad4599aSBarry Smith @*/
3857d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateRestriction(DM dm, PetscBool *flg)
3858d71ae5a4SJacob Faibussowitsch {
38593ad4599aSBarry Smith   PetscFunctionBegin;
38605a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3861534a8f05SLisandro Dalcin   PetscValidBoolPointer(flg, 2);
38623ad4599aSBarry Smith   *flg = (dm->ops->createrestriction) ? PETSC_TRUE : PETSC_FALSE;
38633ad4599aSBarry Smith   PetscFunctionReturn(0);
38643ad4599aSBarry Smith }
38653ad4599aSBarry Smith 
3866a7058e45SLawrence Mitchell /*@
3867bb7acecfSBarry Smith     DMHasCreateInjection - does the `DM` object have a method of providing an injection?
3868a7058e45SLawrence Mitchell 
3869a7058e45SLawrence Mitchell     Not Collective
3870a7058e45SLawrence Mitchell 
3871a7058e45SLawrence Mitchell     Input Parameter:
3872bb7acecfSBarry Smith .   dm - the `DM` object
3873a7058e45SLawrence Mitchell 
3874a7058e45SLawrence Mitchell     Output Parameter:
3875bb7acecfSBarry Smith .   flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateInjection()`.
3876a7058e45SLawrence Mitchell 
3877a7058e45SLawrence Mitchell     Level: developer
3878a7058e45SLawrence Mitchell 
3879bb7acecfSBarry Smith .seealso: `DMCreateInjection()`, `DMHasCreateRestriction()`, `DMHasCreateInterpolation()`
3880a7058e45SLawrence Mitchell 
3881a7058e45SLawrence Mitchell @*/
3882d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateInjection(DM dm, PetscBool *flg)
3883d71ae5a4SJacob Faibussowitsch {
3884a7058e45SLawrence Mitchell   PetscFunctionBegin;
38855a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3886534a8f05SLisandro Dalcin   PetscValidBoolPointer(flg, 2);
3887dbbe0bcdSBarry Smith   if (dm->ops->hascreateinjection) PetscUseTypeMethod(dm, hascreateinjection, flg);
3888ad540459SPierre Jolivet   else *flg = (dm->ops->createinjection) ? PETSC_TRUE : PETSC_FALSE;
3889a7058e45SLawrence Mitchell   PetscFunctionReturn(0);
3890a7058e45SLawrence Mitchell }
3891a7058e45SLawrence Mitchell 
38920298fd71SBarry Smith PetscFunctionList DMList              = NULL;
3893264ace61SBarry Smith PetscBool         DMRegisterAllCalled = PETSC_FALSE;
3894264ace61SBarry Smith 
3895264ace61SBarry Smith /*@C
3896bb7acecfSBarry Smith   DMSetType - Builds a `DM`, for a particular `DM` implementation.
3897264ace61SBarry Smith 
3898d083f849SBarry Smith   Collective on dm
3899264ace61SBarry Smith 
3900264ace61SBarry Smith   Input Parameters:
3901bb7acecfSBarry Smith + dm     - The `DM` object
3902bb7acecfSBarry Smith - method - The name of the `DMType`, for example `DMDA`, `DMPLEX`
3903264ace61SBarry Smith 
3904264ace61SBarry Smith   Options Database Key:
3905bb7acecfSBarry Smith . -dm_type <type> - Sets the `DM` type; use -help for a list of available types
3906264ace61SBarry Smith 
3907264ace61SBarry Smith   Level: intermediate
3908264ace61SBarry Smith 
3909bb7acecfSBarry Smith   Note:
3910bb7acecfSBarry Smith   Of the `DM` is constructed by directly calling a function to construct a particular `DM`, for example, `DMDACreate2d()` or `DMPLEXCreateBoxMesh()`
3911bb7acecfSBarry Smith 
3912bb7acecfSBarry Smith .seealso: `DMType`, `DMDA`, `DMPLEX`, `DMGetType()`, `DMCreate()`, `DMDACreate2d()`
3913264ace61SBarry Smith @*/
3914d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetType(DM dm, DMType method)
3915d71ae5a4SJacob Faibussowitsch {
3916264ace61SBarry Smith   PetscErrorCode (*r)(DM);
3917264ace61SBarry Smith   PetscBool match;
3918264ace61SBarry Smith 
3919264ace61SBarry Smith   PetscFunctionBegin;
3920264ace61SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
39219566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, method, &match));
3922264ace61SBarry Smith   if (match) PetscFunctionReturn(0);
3923264ace61SBarry Smith 
39249566063dSJacob Faibussowitsch   PetscCall(DMRegisterAll());
39259566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListFind(DMList, method, &r));
39267a8be351SBarry Smith   PetscCheck(r, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown DM type: %s", method);
3927264ace61SBarry Smith 
3928dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, destroy);
39299566063dSJacob Faibussowitsch   PetscCall(PetscMemzero(dm->ops, sizeof(*dm->ops)));
39309566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)dm, method));
39319566063dSJacob Faibussowitsch   PetscCall((*r)(dm));
3932264ace61SBarry Smith   PetscFunctionReturn(0);
3933264ace61SBarry Smith }
3934264ace61SBarry Smith 
3935264ace61SBarry Smith /*@C
3936bb7acecfSBarry Smith   DMGetType - Gets the `DM` type name (as a string) from the `DM`.
3937264ace61SBarry Smith 
3938264ace61SBarry Smith   Not Collective
3939264ace61SBarry Smith 
3940264ace61SBarry Smith   Input Parameter:
3941bb7acecfSBarry Smith . dm  - The `DM`
3942264ace61SBarry Smith 
3943264ace61SBarry Smith   Output Parameter:
3944bb7acecfSBarry Smith . type - The `DMType` name
3945264ace61SBarry Smith 
3946264ace61SBarry Smith   Level: intermediate
3947264ace61SBarry Smith 
3948bb7acecfSBarry Smith .seealso: `DMType`, `DMDA`, `DMPLEX`, `DMSetType()`, `DMCreate()`
3949264ace61SBarry Smith @*/
3950d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetType(DM dm, DMType *type)
3951d71ae5a4SJacob Faibussowitsch {
3952264ace61SBarry Smith   PetscFunctionBegin;
3953264ace61SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3954c959eef4SJed Brown   PetscValidPointer(type, 2);
39559566063dSJacob Faibussowitsch   PetscCall(DMRegisterAll());
3956264ace61SBarry Smith   *type = ((PetscObject)dm)->type_name;
3957264ace61SBarry Smith   PetscFunctionReturn(0);
3958264ace61SBarry Smith }
3959264ace61SBarry Smith 
396067a56275SMatthew G Knepley /*@C
3961bb7acecfSBarry Smith   DMConvert - Converts a `DM` to another `DM`, either of the same or different type.
396267a56275SMatthew G Knepley 
3963d083f849SBarry Smith   Collective on dm
396467a56275SMatthew G Knepley 
396567a56275SMatthew G Knepley   Input Parameters:
3966bb7acecfSBarry Smith + dm - the `DM`
3967bb7acecfSBarry Smith - newtype - new `DM` type (use "same" for the same type)
396867a56275SMatthew G Knepley 
396967a56275SMatthew G Knepley   Output Parameter:
3970bb7acecfSBarry Smith . M - pointer to new `DM`
397167a56275SMatthew G Knepley 
397267a56275SMatthew G Knepley   Notes:
3973bb7acecfSBarry Smith   Cannot be used to convert a sequential `DM` to a parallel or a parallel to sequential,
3974bb7acecfSBarry Smith   the MPI communicator of the generated `DM` is always the same as the communicator
3975bb7acecfSBarry Smith   of the input `DM`.
397667a56275SMatthew G Knepley 
397767a56275SMatthew G Knepley   Level: intermediate
397867a56275SMatthew G Knepley 
3979bb7acecfSBarry Smith .seealso: `DM`, `DMSetType()`, `DMCreate()`, `DMClone()`
398067a56275SMatthew G Knepley @*/
3981d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConvert(DM dm, DMType newtype, DM *M)
3982d71ae5a4SJacob Faibussowitsch {
398367a56275SMatthew G Knepley   DM        B;
398467a56275SMatthew G Knepley   char      convname[256];
3985c067b6caSMatthew G. Knepley   PetscBool sametype /*, issame */;
398667a56275SMatthew G Knepley 
398767a56275SMatthew G Knepley   PetscFunctionBegin;
398867a56275SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
398967a56275SMatthew G Knepley   PetscValidType(dm, 1);
399067a56275SMatthew G Knepley   PetscValidPointer(M, 3);
39919566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, newtype, &sametype));
39929566063dSJacob Faibussowitsch   /* PetscCall(PetscStrcmp(newtype, "same", &issame)); */
3993c067b6caSMatthew G. Knepley   if (sametype) {
3994c067b6caSMatthew G. Knepley     *M = dm;
39959566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
3996c067b6caSMatthew G. Knepley     PetscFunctionReturn(0);
3997c067b6caSMatthew G. Knepley   } else {
39980298fd71SBarry Smith     PetscErrorCode (*conv)(DM, DMType, DM *) = NULL;
399967a56275SMatthew G Knepley 
400067a56275SMatthew G Knepley     /*
400167a56275SMatthew G Knepley        Order of precedence:
400267a56275SMatthew G Knepley        1) See if a specialized converter is known to the current DM.
400367a56275SMatthew G Knepley        2) See if a specialized converter is known to the desired DM class.
400467a56275SMatthew G Knepley        3) See if a good general converter is registered for the desired class
400567a56275SMatthew G Knepley        4) See if a good general converter is known for the current matrix.
400667a56275SMatthew G Knepley        5) Use a really basic converter.
400767a56275SMatthew G Knepley     */
400867a56275SMatthew G Knepley 
400967a56275SMatthew G Knepley     /* 1) See if a specialized converter is known to the current DM and the desired class */
40109566063dSJacob Faibussowitsch     PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname)));
40119566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname)));
40129566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_", sizeof(convname)));
40139566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, newtype, sizeof(convname)));
40149566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_C", sizeof(convname)));
40159566063dSJacob Faibussowitsch     PetscCall(PetscObjectQueryFunction((PetscObject)dm, convname, &conv));
401667a56275SMatthew G Knepley     if (conv) goto foundconv;
401767a56275SMatthew G Knepley 
401867a56275SMatthew G Knepley     /* 2)  See if a specialized converter is known to the desired DM class. */
40199566063dSJacob Faibussowitsch     PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &B));
40209566063dSJacob Faibussowitsch     PetscCall(DMSetType(B, newtype));
40219566063dSJacob Faibussowitsch     PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname)));
40229566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname)));
40239566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_", sizeof(convname)));
40249566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, newtype, sizeof(convname)));
40259566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_C", sizeof(convname)));
40269566063dSJacob Faibussowitsch     PetscCall(PetscObjectQueryFunction((PetscObject)B, convname, &conv));
402767a56275SMatthew G Knepley     if (conv) {
40289566063dSJacob Faibussowitsch       PetscCall(DMDestroy(&B));
402967a56275SMatthew G Knepley       goto foundconv;
403067a56275SMatthew G Knepley     }
403167a56275SMatthew G Knepley 
403267a56275SMatthew G Knepley #if 0
403367a56275SMatthew G Knepley     /* 3) See if a good general converter is registered for the desired class */
403467a56275SMatthew G Knepley     conv = B->ops->convertfrom;
40359566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&B));
403667a56275SMatthew G Knepley     if (conv) goto foundconv;
403767a56275SMatthew G Knepley 
403867a56275SMatthew G Knepley     /* 4) See if a good general converter is known for the current matrix */
403967a56275SMatthew G Knepley     if (dm->ops->convert) {
404067a56275SMatthew G Knepley       conv = dm->ops->convert;
404167a56275SMatthew G Knepley     }
404267a56275SMatthew G Knepley     if (conv) goto foundconv;
404367a56275SMatthew G Knepley #endif
404467a56275SMatthew G Knepley 
404567a56275SMatthew G Knepley     /* 5) Use a really basic converter. */
404698921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No conversion possible between DM types %s and %s", ((PetscObject)dm)->type_name, newtype);
404767a56275SMatthew G Knepley 
404867a56275SMatthew G Knepley   foundconv:
40499566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(DM_Convert, dm, 0, 0, 0));
40509566063dSJacob Faibussowitsch     PetscCall((*conv)(dm, newtype, M));
405112fa691eSMatthew G. Knepley     /* Things that are independent of DM type: We should consult DMClone() here */
405290b157c4SStefano Zampini     {
40534fb89dddSMatthew G. Knepley       const PetscReal *maxCell, *Lstart, *L;
40546858538eSMatthew G. Knepley 
40554fb89dddSMatthew G. Knepley       PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
40564fb89dddSMatthew G. Knepley       PetscCall(DMSetPeriodicity(*M, maxCell, Lstart, L));
4057c8a6034eSMark       (*M)->prealloc_only = dm->prealloc_only;
40589566063dSJacob Faibussowitsch       PetscCall(PetscFree((*M)->vectype));
40599566063dSJacob Faibussowitsch       PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*M)->vectype));
40609566063dSJacob Faibussowitsch       PetscCall(PetscFree((*M)->mattype));
40619566063dSJacob Faibussowitsch       PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*M)->mattype));
406212fa691eSMatthew G. Knepley     }
40639566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(DM_Convert, dm, 0, 0, 0));
406467a56275SMatthew G Knepley   }
40659566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)*M));
406667a56275SMatthew G Knepley   PetscFunctionReturn(0);
406767a56275SMatthew G Knepley }
4068264ace61SBarry Smith 
4069264ace61SBarry Smith /*--------------------------------------------------------------------------------------------------------------------*/
4070264ace61SBarry Smith 
4071264ace61SBarry Smith /*@C
4072bb7acecfSBarry Smith   DMRegister -  Adds a new `DM` type implementation
40731c84c290SBarry Smith 
40741c84c290SBarry Smith   Not Collective
40751c84c290SBarry Smith 
40761c84c290SBarry Smith   Input Parameters:
40771c84c290SBarry Smith + name        - The name of a new user-defined creation routine
40781c84c290SBarry Smith - create_func - The creation routine itself
40791c84c290SBarry Smith 
40801c84c290SBarry Smith   Notes:
4081bb7acecfSBarry Smith   DMRegister() may be called multiple times to add several user-defined `DM`s
40821c84c290SBarry Smith 
40831c84c290SBarry Smith   Sample usage:
40841c84c290SBarry Smith .vb
4085bdf89e91SBarry Smith     DMRegister("my_da", MyDMCreate);
40861c84c290SBarry Smith .ve
40871c84c290SBarry Smith 
40881c84c290SBarry Smith   Then, your DM type can be chosen with the procedural interface via
40891c84c290SBarry Smith .vb
40901c84c290SBarry Smith     DMCreate(MPI_Comm, DM *);
40911c84c290SBarry Smith     DMSetType(DM,"my_da");
40921c84c290SBarry Smith .ve
40931c84c290SBarry Smith    or at runtime via the option
40941c84c290SBarry Smith .vb
40951c84c290SBarry Smith     -da_type my_da
40961c84c290SBarry Smith .ve
4097264ace61SBarry Smith 
4098264ace61SBarry Smith   Level: advanced
40991c84c290SBarry Smith 
4100bb7acecfSBarry Smith .seealso: `DM`, `DMType`, `DMSetType()`, `DMRegisterAll()`, `DMRegisterDestroy()`
41011c84c290SBarry Smith 
4102264ace61SBarry Smith @*/
4103d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRegister(const char sname[], PetscErrorCode (*function)(DM))
4104d71ae5a4SJacob Faibussowitsch {
4105264ace61SBarry Smith   PetscFunctionBegin;
41069566063dSJacob Faibussowitsch   PetscCall(DMInitializePackage());
41079566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListAdd(&DMList, sname, function));
4108264ace61SBarry Smith   PetscFunctionReturn(0);
4109264ace61SBarry Smith }
4110264ace61SBarry Smith 
4111b859378eSBarry Smith /*@C
4112bb7acecfSBarry Smith   DMLoad - Loads a DM that has been stored in binary  with `DMView()`.
4113b859378eSBarry Smith 
4114d083f849SBarry Smith   Collective on viewer
4115b859378eSBarry Smith 
4116b859378eSBarry Smith   Input Parameters:
4117bb7acecfSBarry Smith + newdm - the newly loaded `DM`, this needs to have been created with `DMCreate()` or
4118bb7acecfSBarry Smith            some related function before a call to `DMLoad()`.
4119bb7acecfSBarry Smith - viewer - binary file viewer, obtained from `PetscViewerBinaryOpen()` or
4120bb7acecfSBarry Smith            `PETSCVIEWERHDF5` file viewer, obtained from `PetscViewerHDF5Open()`
4121b859378eSBarry Smith 
4122b859378eSBarry Smith    Level: intermediate
4123b859378eSBarry Smith 
4124b859378eSBarry Smith   Notes:
412555849f57SBarry Smith   The type is determined by the data in the file, any type set into the DM before this call is ignored.
4126b859378eSBarry Smith 
4127bb7acecfSBarry Smith   Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` format, one can save multiple `DMPLEX`
4128bb7acecfSBarry Smith   meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()`
4129bb7acecfSBarry Smith   before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object.
4130cd7e8a5eSksagiyam 
4131b859378eSBarry Smith   Notes for advanced users:
4132b859378eSBarry Smith   Most users should not need to know the details of the binary storage
4133bb7acecfSBarry Smith   format, since `DMLoad()` and `DMView()` completely hide these details.
4134b859378eSBarry Smith   But for anyone who's interested, the standard binary matrix storage
4135b859378eSBarry Smith   format is
4136b859378eSBarry Smith .vb
4137b859378eSBarry Smith      has not yet been determined
4138b859378eSBarry Smith .ve
4139b859378eSBarry Smith 
4140db781477SPatrick Sanan .seealso: `PetscViewerBinaryOpen()`, `DMView()`, `MatLoad()`, `VecLoad()`
4141b859378eSBarry Smith @*/
4142d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLoad(DM newdm, PetscViewer viewer)
4143d71ae5a4SJacob Faibussowitsch {
41449331c7a4SMatthew G. Knepley   PetscBool isbinary, ishdf5;
4145b859378eSBarry Smith 
4146b859378eSBarry Smith   PetscFunctionBegin;
4147b859378eSBarry Smith   PetscValidHeaderSpecific(newdm, DM_CLASSID, 1);
4148b859378eSBarry Smith   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
41499566063dSJacob Faibussowitsch   PetscCall(PetscViewerCheckReadable(viewer));
41509566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
41519566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
41529566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_Load, viewer, 0, 0, 0));
41539331c7a4SMatthew G. Knepley   if (isbinary) {
41549331c7a4SMatthew G. Knepley     PetscInt classid;
41559331c7a4SMatthew G. Knepley     char     type[256];
4156b859378eSBarry Smith 
41579566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryRead(viewer, &classid, 1, NULL, PETSC_INT));
41587a8be351SBarry Smith     PetscCheck(classid == DM_FILE_CLASSID, PetscObjectComm((PetscObject)newdm), PETSC_ERR_ARG_WRONG, "Not DM next in file, classid found %d", (int)classid);
41599566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryRead(viewer, type, 256, NULL, PETSC_CHAR));
41609566063dSJacob Faibussowitsch     PetscCall(DMSetType(newdm, type));
4161dbbe0bcdSBarry Smith     PetscTryTypeMethod(newdm, load, viewer);
41629331c7a4SMatthew G. Knepley   } else if (ishdf5) {
4163dbbe0bcdSBarry Smith     PetscTryTypeMethod(newdm, load, viewer);
41649331c7a4SMatthew G. Knepley   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerBinaryOpen() or PetscViewerHDF5Open()");
41659566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_Load, viewer, 0, 0, 0));
4166b859378eSBarry Smith   PetscFunctionReturn(0);
4167b859378eSBarry Smith }
4168b859378eSBarry Smith 
41697da65231SMatthew G Knepley /******************************** FEM Support **********************************/
41707da65231SMatthew G Knepley 
4171d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellVector(PetscInt c, const char name[], PetscInt len, const PetscScalar x[])
4172d71ae5a4SJacob Faibussowitsch {
41731d47ebbbSSatish Balay   PetscInt f;
41741b30c384SMatthew G Knepley 
41757da65231SMatthew G Knepley   PetscFunctionBegin;
417663a3b9bcSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
417748a46eb9SPierre Jolivet   for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  | %g |\n", (double)PetscRealPart(x[f])));
41787da65231SMatthew G Knepley   PetscFunctionReturn(0);
41797da65231SMatthew G Knepley }
41807da65231SMatthew G Knepley 
4181d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellMatrix(PetscInt c, const char name[], PetscInt rows, PetscInt cols, const PetscScalar A[])
4182d71ae5a4SJacob Faibussowitsch {
41831b30c384SMatthew G Knepley   PetscInt f, g;
41847da65231SMatthew G Knepley 
41857da65231SMatthew G Knepley   PetscFunctionBegin;
418663a3b9bcSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
41871d47ebbbSSatish Balay   for (f = 0; f < rows; ++f) {
41889566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PETSC_COMM_SELF, "  |"));
418948a46eb9SPierre Jolivet     for (g = 0; g < cols; ++g) PetscCall(PetscPrintf(PETSC_COMM_SELF, " % 9.5g", (double)PetscRealPart(A[f * cols + g])));
41909566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PETSC_COMM_SELF, " |\n"));
41917da65231SMatthew G Knepley   }
41927da65231SMatthew G Knepley   PetscFunctionReturn(0);
41937da65231SMatthew G Knepley }
4194e7c4fc90SDmitry Karpeev 
4195d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintLocalVec(DM dm, const char name[], PetscReal tol, Vec X)
4196d71ae5a4SJacob Faibussowitsch {
41970c5b8624SToby Isaac   PetscInt           localSize, bs;
41980c5b8624SToby Isaac   PetscMPIInt        size;
41990c5b8624SToby Isaac   Vec                x, xglob;
42000c5b8624SToby Isaac   const PetscScalar *xarray;
4201e759306cSMatthew G. Knepley 
4202e759306cSMatthew G. Knepley   PetscFunctionBegin;
42039566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
42049566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(X, &x));
42059566063dSJacob Faibussowitsch   PetscCall(VecCopy(X, x));
42069566063dSJacob Faibussowitsch   PetscCall(VecChop(x, tol));
42079566063dSJacob Faibussowitsch   PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "%s:\n", name));
42080c5b8624SToby Isaac   if (size > 1) {
42099566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(x, &localSize));
42109566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xarray));
42119566063dSJacob Faibussowitsch     PetscCall(VecGetBlockSize(x, &bs));
42129566063dSJacob Faibussowitsch     PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)dm), bs, localSize, PETSC_DETERMINE, xarray, &xglob));
42130c5b8624SToby Isaac   } else {
42140c5b8624SToby Isaac     xglob = x;
42150c5b8624SToby Isaac   }
42169566063dSJacob Faibussowitsch   PetscCall(VecView(xglob, PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)dm))));
42170c5b8624SToby Isaac   if (size > 1) {
42189566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xglob));
42199566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xarray));
42200c5b8624SToby Isaac   }
42219566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
4222e759306cSMatthew G. Knepley   PetscFunctionReturn(0);
4223e759306cSMatthew G. Knepley }
4224e759306cSMatthew G. Knepley 
422588ed4aceSMatthew G Knepley /*@
4226bb7acecfSBarry Smith   DMGetSection - Get the `PetscSection` encoding the local data layout for the `DM`.   This is equivalent to `DMGetLocalSection()`. Deprecated in v3.12
4227061576a5SJed Brown 
4228061576a5SJed Brown   Input Parameter:
4229bb7acecfSBarry Smith . dm - The `DM`
4230061576a5SJed Brown 
4231061576a5SJed Brown   Output Parameter:
4232bb7acecfSBarry Smith . section - The `PetscSection`
4233061576a5SJed Brown 
4234061576a5SJed Brown   Options Database Keys:
4235bb7acecfSBarry Smith . -dm_petscsection_view - View the `PetscSection` created by the `DM`
4236061576a5SJed Brown 
4237061576a5SJed Brown   Level: advanced
4238061576a5SJed Brown 
4239061576a5SJed Brown   Notes:
4240bb7acecfSBarry Smith   Use `DMGetLocalSection()` in new code.
4241061576a5SJed Brown 
4242bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
4243061576a5SJed Brown 
4244db781477SPatrick Sanan .seealso: `DMGetLocalSection()`, `DMSetLocalSection()`, `DMGetGlobalSection()`
4245061576a5SJed Brown @*/
4246d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSection(DM dm, PetscSection *section)
4247d71ae5a4SJacob Faibussowitsch {
4248061576a5SJed Brown   PetscFunctionBegin;
42499566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, section));
4250061576a5SJed Brown   PetscFunctionReturn(0);
4251061576a5SJed Brown }
4252061576a5SJed Brown 
4253061576a5SJed Brown /*@
4254bb7acecfSBarry Smith   DMGetLocalSection - Get the `PetscSection` encoding the local data layout for the `DM`.
425588ed4aceSMatthew G Knepley 
425688ed4aceSMatthew G Knepley   Input Parameter:
4257bb7acecfSBarry Smith . dm - The `DM`
425888ed4aceSMatthew G Knepley 
425988ed4aceSMatthew G Knepley   Output Parameter:
4260bb7acecfSBarry Smith . section - The `PetscSection`
426188ed4aceSMatthew G Knepley 
4262e5893cccSMatthew G. Knepley   Options Database Keys:
4263bb7acecfSBarry Smith . -dm_petscsection_view - View the section created by the `DM`
4264e5893cccSMatthew G. Knepley 
426588ed4aceSMatthew G Knepley   Level: intermediate
426688ed4aceSMatthew G Knepley 
4267bb7acecfSBarry Smith   Note:
4268bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
426988ed4aceSMatthew G Knepley 
4270db781477SPatrick Sanan .seealso: `DMSetLocalSection()`, `DMGetGlobalSection()`
427188ed4aceSMatthew G Knepley @*/
4272d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalSection(DM dm, PetscSection *section)
4273d71ae5a4SJacob Faibussowitsch {
427488ed4aceSMatthew G Knepley   PetscFunctionBegin;
427588ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
427688ed4aceSMatthew G Knepley   PetscValidPointer(section, 2);
42771bb6d2a8SBarry Smith   if (!dm->localSection && dm->ops->createlocalsection) {
4278e5e52638SMatthew G. Knepley     PetscInt d;
4279e5e52638SMatthew G. Knepley 
428045480ffeSMatthew G. Knepley     if (dm->setfromoptionscalled) {
428145480ffeSMatthew G. Knepley       PetscObject       obj = (PetscObject)dm;
428245480ffeSMatthew G. Knepley       PetscViewer       viewer;
428345480ffeSMatthew G. Knepley       PetscViewerFormat format;
428445480ffeSMatthew G. Knepley       PetscBool         flg;
428545480ffeSMatthew G. Knepley 
42869566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetViewer(PetscObjectComm(obj), obj->options, obj->prefix, "-dm_petscds_view", &viewer, &format, &flg));
42879566063dSJacob Faibussowitsch       if (flg) PetscCall(PetscViewerPushFormat(viewer, format));
428845480ffeSMatthew G. Knepley       for (d = 0; d < dm->Nds; ++d) {
42899566063dSJacob Faibussowitsch         PetscCall(PetscDSSetFromOptions(dm->probs[d].ds));
42909566063dSJacob Faibussowitsch         if (flg) PetscCall(PetscDSView(dm->probs[d].ds, viewer));
429145480ffeSMatthew G. Knepley       }
429245480ffeSMatthew G. Knepley       if (flg) {
42939566063dSJacob Faibussowitsch         PetscCall(PetscViewerFlush(viewer));
42949566063dSJacob Faibussowitsch         PetscCall(PetscViewerPopFormat(viewer));
42959566063dSJacob Faibussowitsch         PetscCall(PetscViewerDestroy(&viewer));
429645480ffeSMatthew G. Knepley       }
429745480ffeSMatthew G. Knepley     }
4298dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm, createlocalsection);
42999566063dSJacob Faibussowitsch     if (dm->localSection) PetscCall(PetscObjectViewFromOptions((PetscObject)dm->localSection, NULL, "-dm_petscsection_view"));
43002f0f8703SMatthew G. Knepley   }
43011bb6d2a8SBarry Smith   *section = dm->localSection;
430288ed4aceSMatthew G Knepley   PetscFunctionReturn(0);
430388ed4aceSMatthew G Knepley }
430488ed4aceSMatthew G Knepley 
430588ed4aceSMatthew G Knepley /*@
4306bb7acecfSBarry Smith   DMSetSection - Set the `PetscSection` encoding the local data layout for the `DM`.  This is equivalent to `DMSetLocalSection()`. Deprecated in v3.12
4307061576a5SJed Brown 
4308061576a5SJed Brown   Input Parameters:
4309bb7acecfSBarry Smith + dm - The `DM`
4310bb7acecfSBarry Smith - section - The `PetscSection`
4311061576a5SJed Brown 
4312061576a5SJed Brown   Level: advanced
4313061576a5SJed Brown 
4314061576a5SJed Brown   Notes:
4315bb7acecfSBarry Smith   Use `DMSetLocalSection()` in new code.
4316061576a5SJed Brown 
4317bb7acecfSBarry Smith   Any existing `PetscSection` will be destroyed
4318061576a5SJed Brown 
4319db781477SPatrick Sanan .seealso: `DMSetLocalSection()`, `DMGetLocalSection()`, `DMSetGlobalSection()`
4320061576a5SJed Brown @*/
4321d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSection(DM dm, PetscSection section)
4322d71ae5a4SJacob Faibussowitsch {
4323061576a5SJed Brown   PetscFunctionBegin;
43249566063dSJacob Faibussowitsch   PetscCall(DMSetLocalSection(dm, section));
4325061576a5SJed Brown   PetscFunctionReturn(0);
4326061576a5SJed Brown }
4327061576a5SJed Brown 
4328061576a5SJed Brown /*@
4329bb7acecfSBarry Smith   DMSetLocalSection - Set the `PetscSection` encoding the local data layout for the `DM`.
433088ed4aceSMatthew G Knepley 
433188ed4aceSMatthew G Knepley   Input Parameters:
4332bb7acecfSBarry Smith + dm - The `DM`
4333bb7acecfSBarry Smith - section - The `PetscSection`
433488ed4aceSMatthew G Knepley 
433588ed4aceSMatthew G Knepley   Level: intermediate
433688ed4aceSMatthew G Knepley 
4337bb7acecfSBarry Smith   Note:
4338bb7acecfSBarry Smith   Any existing Section will be destroyed
433988ed4aceSMatthew G Knepley 
4340bb7acecfSBarry Smith .seealso: `PetscSection`, `DMGetLocalSection()`, `DMSetGlobalSection()`
434188ed4aceSMatthew G Knepley @*/
4342d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLocalSection(DM dm, PetscSection section)
4343d71ae5a4SJacob Faibussowitsch {
4344c473ab19SMatthew G. Knepley   PetscInt numFields = 0;
4345af122d2aSMatthew G Knepley   PetscInt f;
434688ed4aceSMatthew G Knepley 
434788ed4aceSMatthew G Knepley   PetscFunctionBegin;
434888ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4349b9d85ea2SLisandro Dalcin   if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
43509566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)section));
43519566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->localSection));
43521bb6d2a8SBarry Smith   dm->localSection = section;
43539566063dSJacob Faibussowitsch   if (section) PetscCall(PetscSectionGetNumFields(dm->localSection, &numFields));
4354af122d2aSMatthew G Knepley   if (numFields) {
43559566063dSJacob Faibussowitsch     PetscCall(DMSetNumFields(dm, numFields));
4356af122d2aSMatthew G Knepley     for (f = 0; f < numFields; ++f) {
43570f21e855SMatthew G. Knepley       PetscObject disc;
4358af122d2aSMatthew G Knepley       const char *name;
4359af122d2aSMatthew G Knepley 
43609566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldName(dm->localSection, f, &name));
43619566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, f, NULL, &disc));
43629566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName(disc, name));
4363af122d2aSMatthew G Knepley     }
4364af122d2aSMatthew G Knepley   }
4365e87a4003SBarry Smith   /* The global section will be rebuilt in the next call to DMGetGlobalSection(). */
43669566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->globalSection));
436788ed4aceSMatthew G Knepley   PetscFunctionReturn(0);
436888ed4aceSMatthew G Knepley }
436988ed4aceSMatthew G Knepley 
43709435951eSToby Isaac /*@
4371bb7acecfSBarry Smith   DMGetDefaultConstraints - Get the `PetscSection` and `Mat` that specify the local constraint interpolation. See `DMSetDefaultConstraints()` for a description of the purpose of constraint interpolation.
43729435951eSToby Isaac 
4373e228b242SToby Isaac   not collective
4374e228b242SToby Isaac 
43759435951eSToby Isaac   Input Parameter:
4376bb7acecfSBarry Smith . dm - The `DM`
43779435951eSToby Isaac 
4378d8d19677SJose E. Roman   Output Parameters:
4379bb7acecfSBarry Smith + section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section.  Returns NULL if there are no local constraints.
4380bb7acecfSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section.  Returns NULL if there are no local constraints.
438179769bd5SJed Brown - bias - Vector containing bias to be added to constrained dofs
43829435951eSToby Isaac 
43839435951eSToby Isaac   Level: advanced
43849435951eSToby Isaac 
4385bb7acecfSBarry Smith   Note:
4386bb7acecfSBarry Smith   This gets borrowed references, so the user should not destroy the `PetscSection`, `Mat`, or `Vec`.
43879435951eSToby Isaac 
4388db781477SPatrick Sanan .seealso: `DMSetDefaultConstraints()`
43899435951eSToby Isaac @*/
4390d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDefaultConstraints(DM dm, PetscSection *section, Mat *mat, Vec *bias)
4391d71ae5a4SJacob Faibussowitsch {
43929435951eSToby Isaac   PetscFunctionBegin;
43939435951eSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4394dbbe0bcdSBarry Smith   if (!dm->defaultConstraint.section && !dm->defaultConstraint.mat && dm->ops->createdefaultconstraints) PetscUseTypeMethod(dm, createdefaultconstraints);
43953b8ba7d1SJed Brown   if (section) *section = dm->defaultConstraint.section;
43963b8ba7d1SJed Brown   if (mat) *mat = dm->defaultConstraint.mat;
439779769bd5SJed Brown   if (bias) *bias = dm->defaultConstraint.bias;
43989435951eSToby Isaac   PetscFunctionReturn(0);
43999435951eSToby Isaac }
44009435951eSToby Isaac 
44019435951eSToby Isaac /*@
4402bb7acecfSBarry Smith   DMSetDefaultConstraints - Set the `PetscSection` and `Mat` that specify the local constraint interpolation.
44039435951eSToby Isaac 
4404bb7acecfSBarry Smith   If a constraint matrix is specified, then it is applied during `DMGlobalToLocalEnd()` when mode is `INSERT_VALUES`, `INSERT_BC_VALUES`, or `INSERT_ALL_VALUES`.  Without a constraint matrix, the local vector l returned by `DMGlobalToLocalEnd()` contains values that have been scattered from a global vector without modification; with a constraint matrix A, l is modified by computing c = A * l + bias, l[s[i]] = c[i], where the scatter s is defined by the `PetscSection` returned by `DMGetDefaultConstraints()`.
44059435951eSToby Isaac 
4406bb7acecfSBarry Smith   If a constraint matrix is specified, then its adjoint is applied during `DMLocalToGlobalBegin()` when mode is `ADD_VALUES`, `ADD_BC_VALUES`, or `ADD_ALL_VALUES`.  Without a constraint matrix, the local vector l is accumulated into a global vector without modification; with a constraint matrix A, l is first modified by computing c[i] = l[s[i]], l[s[i]] = 0, l = l + A'*c, which is the adjoint of the operation described above.  Any bias, if specified, is ignored when accumulating.
44079435951eSToby Isaac 
4408e228b242SToby Isaac   collective on dm
4409e228b242SToby Isaac 
44109435951eSToby Isaac   Input Parameters:
4411bb7acecfSBarry Smith + dm - The `DM`
4412bb7acecfSBarry Smith . section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
4413bb7acecfSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section:  NULL indicates no constraints.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
4414bb7acecfSBarry Smith - bias - A bias vector to be added to constrained values in the local vector.  NULL indicates no bias.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
44159435951eSToby Isaac 
44169435951eSToby Isaac   Level: advanced
44179435951eSToby Isaac 
4418bb7acecfSBarry Smith   Note:
4419bb7acecfSBarry Smith   This increments the references of the `PetscSection`, `Mat`, and `Vec`, so they user can destroy them.
44209435951eSToby Isaac 
4421db781477SPatrick Sanan .seealso: `DMGetDefaultConstraints()`
44229435951eSToby Isaac @*/
4423d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDefaultConstraints(DM dm, PetscSection section, Mat mat, Vec bias)
4424d71ae5a4SJacob Faibussowitsch {
4425e228b242SToby Isaac   PetscMPIInt result;
44269435951eSToby Isaac 
44279435951eSToby Isaac   PetscFunctionBegin;
44289435951eSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4429e228b242SToby Isaac   if (section) {
4430e228b242SToby Isaac     PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
44319566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)section), &result));
44327a8be351SBarry Smith     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint section must have local communicator");
4433e228b242SToby Isaac   }
4434e228b242SToby Isaac   if (mat) {
4435e228b242SToby Isaac     PetscValidHeaderSpecific(mat, MAT_CLASSID, 3);
44369566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)mat), &result));
44377a8be351SBarry Smith     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint matrix must have local communicator");
4438e228b242SToby Isaac   }
443979769bd5SJed Brown   if (bias) {
444079769bd5SJed Brown     PetscValidHeaderSpecific(bias, VEC_CLASSID, 4);
44419566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)bias), &result));
444279769bd5SJed Brown     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint bias must have local communicator");
444379769bd5SJed Brown   }
44449566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)section));
44459566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->defaultConstraint.section));
44463b8ba7d1SJed Brown   dm->defaultConstraint.section = section;
44479566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)mat));
44489566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&dm->defaultConstraint.mat));
44493b8ba7d1SJed Brown   dm->defaultConstraint.mat = mat;
44509566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)bias));
44519566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&dm->defaultConstraint.bias));
445279769bd5SJed Brown   dm->defaultConstraint.bias = bias;
44539435951eSToby Isaac   PetscFunctionReturn(0);
44549435951eSToby Isaac }
44559435951eSToby Isaac 
4456497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG)
4457507e4973SMatthew G. Knepley /*
4458bb7acecfSBarry Smith   DMDefaultSectionCheckConsistency - Check the consistentcy of the global and local sections. Generates and error if they are not consistent.
4459507e4973SMatthew G. Knepley 
4460507e4973SMatthew G. Knepley   Input Parameters:
4461bb7acecfSBarry Smith + dm - The `DM`
4462bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout
4463bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout
4464507e4973SMatthew G. Knepley 
4465507e4973SMatthew G. Knepley   Level: intermediate
4466507e4973SMatthew G. Knepley 
4467db781477SPatrick Sanan .seealso: `DMGetSectionSF()`, `DMSetSectionSF()`
4468507e4973SMatthew G. Knepley */
4469d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(DM dm, PetscSection localSection, PetscSection globalSection)
4470d71ae5a4SJacob Faibussowitsch {
4471507e4973SMatthew G. Knepley   MPI_Comm        comm;
4472507e4973SMatthew G. Knepley   PetscLayout     layout;
4473507e4973SMatthew G. Knepley   const PetscInt *ranges;
4474507e4973SMatthew G. Knepley   PetscInt        pStart, pEnd, p, nroots;
4475507e4973SMatthew G. Knepley   PetscMPIInt     size, rank;
4476507e4973SMatthew G. Knepley   PetscBool       valid = PETSC_TRUE, gvalid;
4477507e4973SMatthew G. Knepley 
4478507e4973SMatthew G. Knepley   PetscFunctionBegin;
44799566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
4480507e4973SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
44819566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
44829566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
44839566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(globalSection, &pStart, &pEnd));
44849566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &nroots));
44859566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &layout));
44869566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(layout, 1));
44879566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(layout, nroots));
44889566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(layout));
44899566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(layout, &ranges));
4490507e4973SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
4491f741bcd2SMatthew G. Knepley     PetscInt dof, cdof, off, gdof, gcdof, goff, gsize, d;
4492507e4973SMatthew G. Knepley 
44939566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(localSection, p, &dof));
44949566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(localSection, p, &off));
44959566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetConstraintDof(localSection, p, &cdof));
44969566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(globalSection, p, &gdof));
44979566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetConstraintDof(globalSection, p, &gcdof));
44989566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(globalSection, p, &goff));
4499507e4973SMatthew G. Knepley     if (!gdof) continue; /* Censored point */
45009371c9d4SSatish Balay     if ((gdof < 0 ? -(gdof + 1) : gdof) != dof) {
45019371c9d4SSatish Balay       PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local dof %" PetscInt_FMT "\n", rank, gdof, p, dof));
45029371c9d4SSatish Balay       valid = PETSC_FALSE;
45039371c9d4SSatish Balay     }
45049371c9d4SSatish Balay     if (gcdof && (gcdof != cdof)) {
45059371c9d4SSatish Balay       PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global constraints %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local constraints %" PetscInt_FMT "\n", rank, gcdof, p, cdof));
45069371c9d4SSatish Balay       valid = PETSC_FALSE;
45079371c9d4SSatish Balay     }
4508507e4973SMatthew G. Knepley     if (gdof < 0) {
4509507e4973SMatthew G. Knepley       gsize = gdof < 0 ? -(gdof + 1) - gcdof : gdof - gcdof;
4510507e4973SMatthew G. Knepley       for (d = 0; d < gsize; ++d) {
4511507e4973SMatthew G. Knepley         PetscInt offset = -(goff + 1) + d, r;
4512507e4973SMatthew G. Knepley 
45139566063dSJacob Faibussowitsch         PetscCall(PetscFindInt(offset, size + 1, ranges, &r));
4514507e4973SMatthew G. Knepley         if (r < 0) r = -(r + 2);
45159371c9d4SSatish Balay         if ((r < 0) || (r >= size)) {
45169371c9d4SSatish Balay           PetscCall(PetscSynchronizedPrintf(comm, "[%d]Point %" PetscInt_FMT " mapped to invalid process %" PetscInt_FMT " (%" PetscInt_FMT ", %" PetscInt_FMT ")\n", rank, p, r, gdof, goff));
45179371c9d4SSatish Balay           valid = PETSC_FALSE;
45189371c9d4SSatish Balay           break;
45199371c9d4SSatish Balay         }
4520507e4973SMatthew G. Knepley       }
4521507e4973SMatthew G. Knepley     }
4522507e4973SMatthew G. Knepley   }
45239566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&layout));
45249566063dSJacob Faibussowitsch   PetscCall(PetscSynchronizedFlush(comm, NULL));
45251c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&valid, &gvalid, 1, MPIU_BOOL, MPI_LAND, comm));
4526507e4973SMatthew G. Knepley   if (!gvalid) {
45279566063dSJacob Faibussowitsch     PetscCall(DMView(dm, NULL));
4528507e4973SMatthew G. Knepley     SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Inconsistent local and global sections");
4529507e4973SMatthew G. Knepley   }
4530507e4973SMatthew G. Knepley   PetscFunctionReturn(0);
4531507e4973SMatthew G. Knepley }
4532f741bcd2SMatthew G. Knepley #endif
4533507e4973SMatthew G. Knepley 
453488ed4aceSMatthew G Knepley /*@
4535bb7acecfSBarry Smith   DMGetGlobalSection - Get the `PetscSection` encoding the global data layout for the `DM`.
453688ed4aceSMatthew G Knepley 
4537d083f849SBarry Smith   Collective on dm
45388b1ab98fSJed Brown 
453988ed4aceSMatthew G Knepley   Input Parameter:
4540bb7acecfSBarry Smith . dm - The `DM`
454188ed4aceSMatthew G Knepley 
454288ed4aceSMatthew G Knepley   Output Parameter:
4543bb7acecfSBarry Smith . section - The `PetscSection`
454488ed4aceSMatthew G Knepley 
454588ed4aceSMatthew G Knepley   Level: intermediate
454688ed4aceSMatthew G Knepley 
4547bb7acecfSBarry Smith   Note:
4548bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
454988ed4aceSMatthew G Knepley 
4550db781477SPatrick Sanan .seealso: `DMSetLocalSection()`, `DMGetLocalSection()`
455188ed4aceSMatthew G Knepley @*/
4552d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetGlobalSection(DM dm, PetscSection *section)
4553d71ae5a4SJacob Faibussowitsch {
455488ed4aceSMatthew G Knepley   PetscFunctionBegin;
455588ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
455688ed4aceSMatthew G Knepley   PetscValidPointer(section, 2);
45571bb6d2a8SBarry Smith   if (!dm->globalSection) {
4558fd59a867SMatthew G. Knepley     PetscSection s;
4559fd59a867SMatthew G. Knepley 
45609566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &s));
45617a8be351SBarry Smith     PetscCheck(s, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a default PetscSection in order to create a global PetscSection");
45627a8be351SBarry Smith     PetscCheck(dm->sf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a point PetscSF in order to create a global PetscSection");
45639566063dSJacob Faibussowitsch     PetscCall(PetscSectionCreateGlobalSection(s, dm->sf, PETSC_FALSE, PETSC_FALSE, &dm->globalSection));
45649566063dSJacob Faibussowitsch     PetscCall(PetscLayoutDestroy(&dm->map));
45659566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetValueLayout(PetscObjectComm((PetscObject)dm), dm->globalSection, &dm->map));
45669566063dSJacob Faibussowitsch     PetscCall(PetscSectionViewFromOptions(dm->globalSection, NULL, "-global_section_view"));
456788ed4aceSMatthew G Knepley   }
45681bb6d2a8SBarry Smith   *section = dm->globalSection;
456988ed4aceSMatthew G Knepley   PetscFunctionReturn(0);
457088ed4aceSMatthew G Knepley }
457188ed4aceSMatthew G Knepley 
4572b21d0597SMatthew G Knepley /*@
4573bb7acecfSBarry Smith   DMSetGlobalSection - Set the `PetscSection` encoding the global data layout for the `DM`.
4574b21d0597SMatthew G Knepley 
4575b21d0597SMatthew G Knepley   Input Parameters:
4576bb7acecfSBarry Smith + dm - The `DM`
45775080bbdbSMatthew G Knepley - section - The PetscSection, or NULL
4578b21d0597SMatthew G Knepley 
4579b21d0597SMatthew G Knepley   Level: intermediate
4580b21d0597SMatthew G Knepley 
4581bb7acecfSBarry Smith   Note:
4582bb7acecfSBarry Smith   Any existing `PetscSection` will be destroyed
4583b21d0597SMatthew G Knepley 
4584db781477SPatrick Sanan .seealso: `DMGetGlobalSection()`, `DMSetLocalSection()`
4585b21d0597SMatthew G Knepley @*/
4586d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetGlobalSection(DM dm, PetscSection section)
4587d71ae5a4SJacob Faibussowitsch {
4588b21d0597SMatthew G Knepley   PetscFunctionBegin;
4589b21d0597SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
45905080bbdbSMatthew G Knepley   if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
45919566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)section));
45929566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->globalSection));
45931bb6d2a8SBarry Smith   dm->globalSection = section;
4594497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG)
45959566063dSJacob Faibussowitsch   if (section) PetscCall(DMDefaultSectionCheckConsistency_Internal(dm, dm->localSection, section));
4596507e4973SMatthew G. Knepley #endif
4597b21d0597SMatthew G Knepley   PetscFunctionReturn(0);
4598b21d0597SMatthew G Knepley }
4599b21d0597SMatthew G Knepley 
460088ed4aceSMatthew G Knepley /*@
4601bb7acecfSBarry Smith   DMGetSectionSF - Get the `PetscSF` encoding the parallel dof overlap for the `DM`. If it has not been set,
4602bb7acecfSBarry Smith   it is created from the default `PetscSection` layouts in the `DM`.
460388ed4aceSMatthew G Knepley 
460488ed4aceSMatthew G Knepley   Input Parameter:
4605bb7acecfSBarry Smith . dm - The `DM`
460688ed4aceSMatthew G Knepley 
460788ed4aceSMatthew G Knepley   Output Parameter:
4608bb7acecfSBarry Smith . sf - The `PetscSF`
460988ed4aceSMatthew G Knepley 
461088ed4aceSMatthew G Knepley   Level: intermediate
461188ed4aceSMatthew G Knepley 
4612bb7acecfSBarry Smith   Note:
4613bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
461488ed4aceSMatthew G Knepley 
4615db781477SPatrick Sanan .seealso: `DMSetSectionSF()`, `DMCreateSectionSF()`
461688ed4aceSMatthew G Knepley @*/
4617d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSectionSF(DM dm, PetscSF *sf)
4618d71ae5a4SJacob Faibussowitsch {
461988ed4aceSMatthew G Knepley   PetscInt nroots;
462088ed4aceSMatthew G Knepley 
462188ed4aceSMatthew G Knepley   PetscFunctionBegin;
462288ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
462388ed4aceSMatthew G Knepley   PetscValidPointer(sf, 2);
462448a46eb9SPierre Jolivet   if (!dm->sectionSF) PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF));
46259566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(dm->sectionSF, &nroots, NULL, NULL, NULL));
462688ed4aceSMatthew G Knepley   if (nroots < 0) {
462788ed4aceSMatthew G Knepley     PetscSection section, gSection;
462888ed4aceSMatthew G Knepley 
46299566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
463031ea6d37SMatthew G Knepley     if (section) {
46319566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalSection(dm, &gSection));
46329566063dSJacob Faibussowitsch       PetscCall(DMCreateSectionSF(dm, section, gSection));
463331ea6d37SMatthew G Knepley     } else {
46340298fd71SBarry Smith       *sf = NULL;
463531ea6d37SMatthew G Knepley       PetscFunctionReturn(0);
463631ea6d37SMatthew G Knepley     }
463788ed4aceSMatthew G Knepley   }
46381bb6d2a8SBarry Smith   *sf = dm->sectionSF;
463988ed4aceSMatthew G Knepley   PetscFunctionReturn(0);
464088ed4aceSMatthew G Knepley }
464188ed4aceSMatthew G Knepley 
464288ed4aceSMatthew G Knepley /*@
4643bb7acecfSBarry Smith   DMSetSectionSF - Set the `PetscSF` encoding the parallel dof overlap for the `DM`
464488ed4aceSMatthew G Knepley 
464588ed4aceSMatthew G Knepley   Input Parameters:
4646bb7acecfSBarry Smith + dm - The `DM`
4647bb7acecfSBarry Smith - sf - The `PetscSF`
464888ed4aceSMatthew G Knepley 
464988ed4aceSMatthew G Knepley   Level: intermediate
465088ed4aceSMatthew G Knepley 
4651bb7acecfSBarry Smith   Note:
4652bb7acecfSBarry Smith   Any previous `PetscSF` is destroyed
465388ed4aceSMatthew G Knepley 
4654db781477SPatrick Sanan .seealso: `DMGetSectionSF()`, `DMCreateSectionSF()`
465588ed4aceSMatthew G Knepley @*/
4656d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSectionSF(DM dm, PetscSF sf)
4657d71ae5a4SJacob Faibussowitsch {
465888ed4aceSMatthew G Knepley   PetscFunctionBegin;
465988ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4660b9d85ea2SLisandro Dalcin   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
46619566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)sf));
46629566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&dm->sectionSF));
46631bb6d2a8SBarry Smith   dm->sectionSF = sf;
466488ed4aceSMatthew G Knepley   PetscFunctionReturn(0);
466588ed4aceSMatthew G Knepley }
466688ed4aceSMatthew G Knepley 
466788ed4aceSMatthew G Knepley /*@C
4668bb7acecfSBarry Smith   DMCreateSectionSF - Create the `PetscSF` encoding the parallel dof overlap for the `DM` based upon the `PetscSection`s
466988ed4aceSMatthew G Knepley   describing the data layout.
467088ed4aceSMatthew G Knepley 
467188ed4aceSMatthew G Knepley   Input Parameters:
4672bb7acecfSBarry Smith + dm - The `DM`
4673bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout
4674bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout
467588ed4aceSMatthew G Knepley 
46761bb6d2a8SBarry Smith   Level: developer
46771bb6d2a8SBarry Smith 
4678bb7acecfSBarry Smith   Note:
4679bb7acecfSBarry Smith   One usually uses `DMGetSectionSF()` to obtain the `PetscSF`
4680bb7acecfSBarry Smith 
4681bb7acecfSBarry Smith   Developer Note:
4682bb7acecfSBarry Smith   Since this routine has for arguments the two sections from the `DM` and puts the resulting `PetscSF`
4683bb7acecfSBarry Smith   directly into the `DM`, perhaps this function should not take the local and global sections as
4684bb7acecfSBarry Smith   input and should just obtain them from the `DM`?
46851bb6d2a8SBarry Smith 
4686db781477SPatrick Sanan .seealso: `DMGetSectionSF()`, `DMSetSectionSF()`, `DMGetLocalSection()`, `DMGetGlobalSection()`
468788ed4aceSMatthew G Knepley @*/
4688d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSectionSF(DM dm, PetscSection localSection, PetscSection globalSection)
4689d71ae5a4SJacob Faibussowitsch {
469088ed4aceSMatthew G Knepley   PetscFunctionBegin;
469188ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
46929566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphSection(dm->sectionSF, localSection, globalSection));
469388ed4aceSMatthew G Knepley   PetscFunctionReturn(0);
469488ed4aceSMatthew G Knepley }
4695af122d2aSMatthew G Knepley 
4696b21d0597SMatthew G Knepley /*@
4697bb7acecfSBarry Smith   DMGetPointSF - Get the `PetscSF` encoding the parallel section point overlap for the `DM`.
4698bb7acecfSBarry Smith 
4699bb7acecfSBarry Smith   Not collective but the resulting `PetscSF` is collective
4700b21d0597SMatthew G Knepley 
4701b21d0597SMatthew G Knepley   Input Parameter:
4702bb7acecfSBarry Smith . dm - The `DM`
4703b21d0597SMatthew G Knepley 
4704b21d0597SMatthew G Knepley   Output Parameter:
4705bb7acecfSBarry Smith . sf - The `PetscSF`
4706b21d0597SMatthew G Knepley 
4707b21d0597SMatthew G Knepley   Level: intermediate
4708b21d0597SMatthew G Knepley 
4709bb7acecfSBarry Smith   Note:
4710bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
4711b21d0597SMatthew G Knepley 
4712db781477SPatrick Sanan .seealso: `DMSetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()`
4713b21d0597SMatthew G Knepley @*/
4714d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetPointSF(DM dm, PetscSF *sf)
4715d71ae5a4SJacob Faibussowitsch {
4716b21d0597SMatthew G Knepley   PetscFunctionBegin;
4717b21d0597SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4718b21d0597SMatthew G Knepley   PetscValidPointer(sf, 2);
4719b21d0597SMatthew G Knepley   *sf = dm->sf;
4720b21d0597SMatthew G Knepley   PetscFunctionReturn(0);
4721b21d0597SMatthew G Knepley }
4722b21d0597SMatthew G Knepley 
4723057b4bcdSMatthew G Knepley /*@
4724bb7acecfSBarry Smith   DMSetPointSF - Set the `PetscSF` encoding the parallel section point overlap for the `DM`.
4725bb7acecfSBarry Smith 
4726bb7acecfSBarry Smith   Collective on dm
4727057b4bcdSMatthew G Knepley 
4728057b4bcdSMatthew G Knepley   Input Parameters:
4729bb7acecfSBarry Smith + dm - The `DM`
4730bb7acecfSBarry Smith - sf - The` PetscSF`
4731057b4bcdSMatthew G Knepley 
4732057b4bcdSMatthew G Knepley   Level: intermediate
4733057b4bcdSMatthew G Knepley 
4734db781477SPatrick Sanan .seealso: `DMGetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()`
4735057b4bcdSMatthew G Knepley @*/
4736d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetPointSF(DM dm, PetscSF sf)
4737d71ae5a4SJacob Faibussowitsch {
4738057b4bcdSMatthew G Knepley   PetscFunctionBegin;
4739057b4bcdSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4740b9d85ea2SLisandro Dalcin   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
47419566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)sf));
47429566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&dm->sf));
4743057b4bcdSMatthew G Knepley   dm->sf = sf;
4744057b4bcdSMatthew G Knepley   PetscFunctionReturn(0);
4745057b4bcdSMatthew G Knepley }
4746057b4bcdSMatthew G Knepley 
47474f37162bSMatthew G. Knepley /*@
4748bb7acecfSBarry Smith   DMGetNaturalSF - Get the `PetscSF` encoding the map back to the original mesh ordering
47494f37162bSMatthew G. Knepley 
47504f37162bSMatthew G. Knepley   Input Parameter:
4751bb7acecfSBarry Smith . dm - The `DM`
47524f37162bSMatthew G. Knepley 
47534f37162bSMatthew G. Knepley   Output Parameter:
4754bb7acecfSBarry Smith . sf - The `PetscSF`
47554f37162bSMatthew G. Knepley 
47564f37162bSMatthew G. Knepley   Level: intermediate
47574f37162bSMatthew G. Knepley 
4758bb7acecfSBarry Smith   Note:
4759bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
47604f37162bSMatthew G. Knepley 
4761db781477SPatrick Sanan .seealso: `DMSetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()`
47624f37162bSMatthew G. Knepley @*/
4763d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNaturalSF(DM dm, PetscSF *sf)
4764d71ae5a4SJacob Faibussowitsch {
47654f37162bSMatthew G. Knepley   PetscFunctionBegin;
47664f37162bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
47674f37162bSMatthew G. Knepley   PetscValidPointer(sf, 2);
47684f37162bSMatthew G. Knepley   *sf = dm->sfNatural;
47694f37162bSMatthew G. Knepley   PetscFunctionReturn(0);
47704f37162bSMatthew G. Knepley }
47714f37162bSMatthew G. Knepley 
47724f37162bSMatthew G. Knepley /*@
47734f37162bSMatthew G. Knepley   DMSetNaturalSF - Set the PetscSF encoding the map back to the original mesh ordering
47744f37162bSMatthew G. Knepley 
47754f37162bSMatthew G. Knepley   Input Parameters:
47764f37162bSMatthew G. Knepley + dm - The DM
47774f37162bSMatthew G. Knepley - sf - The PetscSF
47784f37162bSMatthew G. Knepley 
47794f37162bSMatthew G. Knepley   Level: intermediate
47804f37162bSMatthew G. Knepley 
4781db781477SPatrick Sanan .seealso: `DMGetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()`
47824f37162bSMatthew G. Knepley @*/
4783d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNaturalSF(DM dm, PetscSF sf)
4784d71ae5a4SJacob Faibussowitsch {
47854f37162bSMatthew G. Knepley   PetscFunctionBegin;
47864f37162bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
47874f37162bSMatthew G. Knepley   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
47889566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)sf));
47899566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&dm->sfNatural));
47904f37162bSMatthew G. Knepley   dm->sfNatural = sf;
47914f37162bSMatthew G. Knepley   PetscFunctionReturn(0);
47924f37162bSMatthew G. Knepley }
47934f37162bSMatthew G. Knepley 
4794d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetDefaultAdjacency_Private(DM dm, PetscInt f, PetscObject disc)
4795d71ae5a4SJacob Faibussowitsch {
479634aa8a36SMatthew G. Knepley   PetscClassId id;
479734aa8a36SMatthew G. Knepley 
479834aa8a36SMatthew G. Knepley   PetscFunctionBegin;
47999566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetClassId(disc, &id));
480034aa8a36SMatthew G. Knepley   if (id == PETSCFE_CLASSID) {
48019566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE));
480234aa8a36SMatthew G. Knepley   } else if (id == PETSCFV_CLASSID) {
48039566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, f, PETSC_TRUE, PETSC_FALSE));
480417c1d62eSMatthew G. Knepley   } else {
48059566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE));
480634aa8a36SMatthew G. Knepley   }
480734aa8a36SMatthew G. Knepley   PetscFunctionReturn(0);
480834aa8a36SMatthew G. Knepley }
480934aa8a36SMatthew G. Knepley 
4810d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFieldEnlarge_Static(DM dm, PetscInt NfNew)
4811d71ae5a4SJacob Faibussowitsch {
481244a7f3ddSMatthew G. Knepley   RegionField *tmpr;
481344a7f3ddSMatthew G. Knepley   PetscInt     Nf = dm->Nf, f;
481444a7f3ddSMatthew G. Knepley 
481544a7f3ddSMatthew G. Knepley   PetscFunctionBegin;
481644a7f3ddSMatthew G. Knepley   if (Nf >= NfNew) PetscFunctionReturn(0);
48179566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(NfNew, &tmpr));
481844a7f3ddSMatthew G. Knepley   for (f = 0; f < Nf; ++f) tmpr[f] = dm->fields[f];
48199371c9d4SSatish Balay   for (f = Nf; f < NfNew; ++f) {
48209371c9d4SSatish Balay     tmpr[f].disc        = NULL;
48219371c9d4SSatish Balay     tmpr[f].label       = NULL;
48229371c9d4SSatish Balay     tmpr[f].avoidTensor = PETSC_FALSE;
48239371c9d4SSatish Balay   }
48249566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->fields));
482544a7f3ddSMatthew G. Knepley   dm->Nf     = NfNew;
482644a7f3ddSMatthew G. Knepley   dm->fields = tmpr;
482744a7f3ddSMatthew G. Knepley   PetscFunctionReturn(0);
482844a7f3ddSMatthew G. Knepley }
482944a7f3ddSMatthew G. Knepley 
483044a7f3ddSMatthew G. Knepley /*@
483144a7f3ddSMatthew G. Knepley   DMClearFields - Remove all fields from the DM
483244a7f3ddSMatthew G. Knepley 
4833d083f849SBarry Smith   Logically collective on dm
483444a7f3ddSMatthew G. Knepley 
483544a7f3ddSMatthew G. Knepley   Input Parameter:
483644a7f3ddSMatthew G. Knepley . dm - The DM
483744a7f3ddSMatthew G. Knepley 
483844a7f3ddSMatthew G. Knepley   Level: intermediate
483944a7f3ddSMatthew G. Knepley 
4840db781477SPatrick Sanan .seealso: `DMGetNumFields()`, `DMSetNumFields()`, `DMSetField()`
484144a7f3ddSMatthew G. Knepley @*/
4842d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearFields(DM dm)
4843d71ae5a4SJacob Faibussowitsch {
484444a7f3ddSMatthew G. Knepley   PetscInt f;
484544a7f3ddSMatthew G. Knepley 
484644a7f3ddSMatthew G. Knepley   PetscFunctionBegin;
484744a7f3ddSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
484844a7f3ddSMatthew G. Knepley   for (f = 0; f < dm->Nf; ++f) {
48499566063dSJacob Faibussowitsch     PetscCall(PetscObjectDestroy(&dm->fields[f].disc));
48509566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&dm->fields[f].label));
485144a7f3ddSMatthew G. Knepley   }
48529566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->fields));
485344a7f3ddSMatthew G. Knepley   dm->fields = NULL;
485444a7f3ddSMatthew G. Knepley   dm->Nf     = 0;
485544a7f3ddSMatthew G. Knepley   PetscFunctionReturn(0);
485644a7f3ddSMatthew G. Knepley }
485744a7f3ddSMatthew G. Knepley 
4858689b5837SMatthew G. Knepley /*@
4859689b5837SMatthew G. Knepley   DMGetNumFields - Get the number of fields in the DM
4860689b5837SMatthew G. Knepley 
4861689b5837SMatthew G. Knepley   Not collective
4862689b5837SMatthew G. Knepley 
4863689b5837SMatthew G. Knepley   Input Parameter:
4864689b5837SMatthew G. Knepley . dm - The DM
4865689b5837SMatthew G. Knepley 
4866689b5837SMatthew G. Knepley   Output Parameter:
4867689b5837SMatthew G. Knepley . Nf - The number of fields
4868689b5837SMatthew G. Knepley 
4869689b5837SMatthew G. Knepley   Level: intermediate
4870689b5837SMatthew G. Knepley 
4871db781477SPatrick Sanan .seealso: `DMSetNumFields()`, `DMSetField()`
4872689b5837SMatthew G. Knepley @*/
4873d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumFields(DM dm, PetscInt *numFields)
4874d71ae5a4SJacob Faibussowitsch {
48750f21e855SMatthew G. Knepley   PetscFunctionBegin;
48760f21e855SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4877534a8f05SLisandro Dalcin   PetscValidIntPointer(numFields, 2);
487844a7f3ddSMatthew G. Knepley   *numFields = dm->Nf;
4879af122d2aSMatthew G Knepley   PetscFunctionReturn(0);
4880af122d2aSMatthew G Knepley }
4881af122d2aSMatthew G Knepley 
4882689b5837SMatthew G. Knepley /*@
4883689b5837SMatthew G. Knepley   DMSetNumFields - Set the number of fields in the DM
4884689b5837SMatthew G. Knepley 
4885d083f849SBarry Smith   Logically collective on dm
4886689b5837SMatthew G. Knepley 
4887689b5837SMatthew G. Knepley   Input Parameters:
4888689b5837SMatthew G. Knepley + dm - The DM
4889689b5837SMatthew G. Knepley - Nf - The number of fields
4890689b5837SMatthew G. Knepley 
4891689b5837SMatthew G. Knepley   Level: intermediate
4892689b5837SMatthew G. Knepley 
4893db781477SPatrick Sanan .seealso: `DMGetNumFields()`, `DMSetField()`
4894689b5837SMatthew G. Knepley @*/
4895d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNumFields(DM dm, PetscInt numFields)
4896d71ae5a4SJacob Faibussowitsch {
48970f21e855SMatthew G. Knepley   PetscInt Nf, f;
4898af122d2aSMatthew G Knepley 
4899af122d2aSMatthew G Knepley   PetscFunctionBegin;
4900af122d2aSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
49019566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
49020f21e855SMatthew G. Knepley   for (f = Nf; f < numFields; ++f) {
49030f21e855SMatthew G. Knepley     PetscContainer obj;
49040f21e855SMatthew G. Knepley 
49059566063dSJacob Faibussowitsch     PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject)dm), &obj));
49069566063dSJacob Faibussowitsch     PetscCall(DMAddField(dm, NULL, (PetscObject)obj));
49079566063dSJacob Faibussowitsch     PetscCall(PetscContainerDestroy(&obj));
4908af122d2aSMatthew G Knepley   }
4909af122d2aSMatthew G Knepley   PetscFunctionReturn(0);
4910af122d2aSMatthew G Knepley }
4911af122d2aSMatthew G Knepley 
4912c1929be8SMatthew G. Knepley /*@
4913bb7acecfSBarry Smith   DMGetField - Return the `DMLabel` and discretization object for a given `DM` field
4914c1929be8SMatthew G. Knepley 
4915c1929be8SMatthew G. Knepley   Not collective
4916c1929be8SMatthew G. Knepley 
4917c1929be8SMatthew G. Knepley   Input Parameters:
4918bb7acecfSBarry Smith + dm - The `DM`
4919c1929be8SMatthew G. Knepley - f  - The field number
4920c1929be8SMatthew G. Knepley 
492144a7f3ddSMatthew G. Knepley   Output Parameters:
4922bb7acecfSBarry Smith + label - The label indicating the support of the field, or NULL for the entire mesh (pass in NULL if not needed)
4923bb7acecfSBarry Smith - disc - The discretization object (pass in NULL if not needed)
4924c1929be8SMatthew G. Knepley 
492544a7f3ddSMatthew G. Knepley   Level: intermediate
4926c1929be8SMatthew G. Knepley 
4927db781477SPatrick Sanan .seealso: `DMAddField()`, `DMSetField()`
4928c1929be8SMatthew G. Knepley @*/
4929d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetField(DM dm, PetscInt f, DMLabel *label, PetscObject *disc)
4930d71ae5a4SJacob Faibussowitsch {
4931af122d2aSMatthew G Knepley   PetscFunctionBegin;
4932af122d2aSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4933bb7acecfSBarry Smith   PetscValidPointer(disc, 4);
49347a8be351SBarry Smith   PetscCheck((f >= 0) && (f < dm->Nf), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, dm->Nf);
493544a7f3ddSMatthew G. Knepley   if (label) *label = dm->fields[f].label;
4936bb7acecfSBarry Smith   if (disc) *disc = dm->fields[f].disc;
4937decb47aaSMatthew G. Knepley   PetscFunctionReturn(0);
4938decb47aaSMatthew G. Knepley }
4939decb47aaSMatthew G. Knepley 
4940083401c6SMatthew G. Knepley /* Does not clear the DS */
4941d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField_Internal(DM dm, PetscInt f, DMLabel label, PetscObject disc)
4942d71ae5a4SJacob Faibussowitsch {
4943083401c6SMatthew G. Knepley   PetscFunctionBegin;
49449566063dSJacob Faibussowitsch   PetscCall(DMFieldEnlarge_Static(dm, f + 1));
49459566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&dm->fields[f].label));
49469566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&dm->fields[f].disc));
4947083401c6SMatthew G. Knepley   dm->fields[f].label = label;
4948bb7acecfSBarry Smith   dm->fields[f].disc  = disc;
49499566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
4950bb7acecfSBarry Smith   PetscCall(PetscObjectReference((PetscObject)disc));
4951083401c6SMatthew G. Knepley   PetscFunctionReturn(0);
4952083401c6SMatthew G. Knepley }
4953083401c6SMatthew G. Knepley 
4954c1929be8SMatthew G. Knepley /*@
4955bb7acecfSBarry Smith   DMSetField - Set the discretization object for a given `DM` field. Usually one would call `DMAddField()` which automatically handles
4956bb7acecfSBarry Smith   the field numbering.
4957c1929be8SMatthew G. Knepley 
4958d083f849SBarry Smith   Logically collective on dm
4959c1929be8SMatthew G. Knepley 
4960c1929be8SMatthew G. Knepley   Input Parameters:
4961bb7acecfSBarry Smith + dm    - The `DM`
4962c1929be8SMatthew G. Knepley . f     - The field number
496344a7f3ddSMatthew G. Knepley . label - The label indicating the support of the field, or NULL for the entire mesh
4964bb7acecfSBarry Smith - disc - The discretization object
4965c1929be8SMatthew G. Knepley 
496644a7f3ddSMatthew G. Knepley   Level: intermediate
4967c1929be8SMatthew G. Knepley 
4968db781477SPatrick Sanan .seealso: `DMAddField()`, `DMGetField()`
4969c1929be8SMatthew G. Knepley @*/
4970d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField(DM dm, PetscInt f, DMLabel label, PetscObject disc)
4971d71ae5a4SJacob Faibussowitsch {
4972decb47aaSMatthew G. Knepley   PetscFunctionBegin;
4973decb47aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4974e5e52638SMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3);
4975bb7acecfSBarry Smith   PetscValidHeader(disc, 4);
49767a8be351SBarry Smith   PetscCheck(f >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be non-negative", f);
4977bb7acecfSBarry Smith   PetscCall(DMSetField_Internal(dm, f, label, disc));
4978bb7acecfSBarry Smith   PetscCall(DMSetDefaultAdjacency_Private(dm, f, disc));
49799566063dSJacob Faibussowitsch   PetscCall(DMClearDS(dm));
498044a7f3ddSMatthew G. Knepley   PetscFunctionReturn(0);
498144a7f3ddSMatthew G. Knepley }
498244a7f3ddSMatthew G. Knepley 
498344a7f3ddSMatthew G. Knepley /*@
4984bb7acecfSBarry Smith   DMAddField - Add a field to a `DM` object. A field is a function space defined by of a set of discretization points (geometric entities)
4985bb7acecfSBarry Smith   and a discretization object that defines the function space associated with those points.
498644a7f3ddSMatthew G. Knepley 
4987d083f849SBarry Smith   Logically collective on dm
498844a7f3ddSMatthew G. Knepley 
498944a7f3ddSMatthew G. Knepley   Input Parameters:
4990bb7acecfSBarry Smith + dm    - The `DM`
499144a7f3ddSMatthew G. Knepley . label - The label indicating the support of the field, or NULL for the entire mesh
4992bb7acecfSBarry Smith - disc - The discretization object
499344a7f3ddSMatthew G. Knepley 
499444a7f3ddSMatthew G. Knepley   Level: intermediate
499544a7f3ddSMatthew G. Knepley 
4996bb7acecfSBarry Smith   Notes:
4997bb7acecfSBarry Smith   The label already exists or will be added to the `DM` with `DMSetLabel()`.
4998bb7acecfSBarry Smith 
4999bb7acecfSBarry Smith   For example, a piecewise continous pressure field can be defined by coefficients at the cell centers of a mesh and piecewise constant functions
5000bb7acecfSBarry Smith   within each cell. Thus a specific function in the space is defined by the combination of a `Vec` containing the coefficients, a `DM` defining the
5001bb7acecfSBarry Smith   geometry entities, a `DMLabel` indicating a subset of those geometric entities, and a discretization object, such as a `PetscFE`.
5002bb7acecfSBarry Smith 
5003bb7acecfSBarry Smith .seealso: `DMSetLabel()`, `DMSetField()`, `DMGetField()`, `PetscFE`
500444a7f3ddSMatthew G. Knepley @*/
5005d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddField(DM dm, DMLabel label, PetscObject disc)
5006d71ae5a4SJacob Faibussowitsch {
500744a7f3ddSMatthew G. Knepley   PetscInt Nf = dm->Nf;
500844a7f3ddSMatthew G. Knepley 
500944a7f3ddSMatthew G. Knepley   PetscFunctionBegin;
501044a7f3ddSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5011064a246eSJacob Faibussowitsch   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
5012bb7acecfSBarry Smith   PetscValidHeader(disc, 3);
50139566063dSJacob Faibussowitsch   PetscCall(DMFieldEnlarge_Static(dm, Nf + 1));
501444a7f3ddSMatthew G. Knepley   dm->fields[Nf].label = label;
5015bb7acecfSBarry Smith   dm->fields[Nf].disc  = disc;
50169566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
5017bb7acecfSBarry Smith   PetscCall(PetscObjectReference((PetscObject)disc));
5018bb7acecfSBarry Smith   PetscCall(DMSetDefaultAdjacency_Private(dm, Nf, disc));
50199566063dSJacob Faibussowitsch   PetscCall(DMClearDS(dm));
5020af122d2aSMatthew G Knepley   PetscFunctionReturn(0);
5021af122d2aSMatthew G Knepley }
50226636e97aSMatthew G Knepley 
5023e5e52638SMatthew G. Knepley /*@
5024e0b68406SMatthew Knepley   DMSetFieldAvoidTensor - Set flag to avoid defining the field on tensor cells
5025e0b68406SMatthew Knepley 
5026e0b68406SMatthew Knepley   Logically collective on dm
5027e0b68406SMatthew Knepley 
5028e0b68406SMatthew Knepley   Input Parameters:
5029bb7acecfSBarry Smith + dm          - The `DM`
5030e0b68406SMatthew Knepley . f           - The field index
5031bb7acecfSBarry Smith - avoidTensor - `PETSC_TRUE` to skip defining the field on tensor cells
5032e0b68406SMatthew Knepley 
5033e0b68406SMatthew Knepley   Level: intermediate
5034e0b68406SMatthew Knepley 
5035db781477SPatrick Sanan .seealso: `DMGetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()`
5036e0b68406SMatthew Knepley @*/
5037d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFieldAvoidTensor(DM dm, PetscInt f, PetscBool avoidTensor)
5038d71ae5a4SJacob Faibussowitsch {
5039e0b68406SMatthew Knepley   PetscFunctionBegin;
504063a3b9bcSJacob Faibussowitsch   PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf);
5041e0b68406SMatthew Knepley   dm->fields[f].avoidTensor = avoidTensor;
5042e0b68406SMatthew Knepley   PetscFunctionReturn(0);
5043e0b68406SMatthew Knepley }
5044e0b68406SMatthew Knepley 
5045e0b68406SMatthew Knepley /*@
5046e0b68406SMatthew Knepley   DMGetFieldAvoidTensor - Get flag to avoid defining the field on tensor cells
5047e0b68406SMatthew Knepley 
5048bb7acecfSBarry Smith   Not collective
5049e0b68406SMatthew Knepley 
5050e0b68406SMatthew Knepley   Input Parameters:
5051bb7acecfSBarry Smith + dm          - The `DM`
5052e0b68406SMatthew Knepley - f           - The field index
5053e0b68406SMatthew Knepley 
5054e0b68406SMatthew Knepley   Output Parameter:
5055e0b68406SMatthew Knepley . avoidTensor - The flag to avoid defining the field on tensor cells
5056e0b68406SMatthew Knepley 
5057e0b68406SMatthew Knepley   Level: intermediate
5058e0b68406SMatthew Knepley 
5059bb7acecfSBarry Smith  .seealso: `DMAddField()`, `DMSetField()`, `DMGetField()`, `DMSetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()`
5060e0b68406SMatthew Knepley @*/
5061d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFieldAvoidTensor(DM dm, PetscInt f, PetscBool *avoidTensor)
5062d71ae5a4SJacob Faibussowitsch {
5063e0b68406SMatthew Knepley   PetscFunctionBegin;
506463a3b9bcSJacob Faibussowitsch   PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf);
5065e0b68406SMatthew Knepley   *avoidTensor = dm->fields[f].avoidTensor;
5066e0b68406SMatthew Knepley   PetscFunctionReturn(0);
5067e0b68406SMatthew Knepley }
5068e0b68406SMatthew Knepley 
5069e0b68406SMatthew Knepley /*@
5070bb7acecfSBarry Smith   DMCopyFields - Copy the discretizations for the `DM` into another `DM`
5071e5e52638SMatthew G. Knepley 
5072d083f849SBarry Smith   Collective on dm
5073e5e52638SMatthew G. Knepley 
5074e5e52638SMatthew G. Knepley   Input Parameter:
5075bb7acecfSBarry Smith . dm - The `DM`
5076e5e52638SMatthew G. Knepley 
5077e5e52638SMatthew G. Knepley   Output Parameter:
5078bb7acecfSBarry Smith . newdm - The `DM`
5079e5e52638SMatthew G. Knepley 
5080e5e52638SMatthew G. Knepley   Level: advanced
5081e5e52638SMatthew G. Knepley 
5082db781477SPatrick Sanan .seealso: `DMGetField()`, `DMSetField()`, `DMAddField()`, `DMCopyDS()`, `DMGetDS()`, `DMGetCellDS()`
5083e5e52638SMatthew G. Knepley @*/
5084d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyFields(DM dm, DM newdm)
5085d71ae5a4SJacob Faibussowitsch {
5086e5e52638SMatthew G. Knepley   PetscInt Nf, f;
5087e5e52638SMatthew G. Knepley 
5088e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5089e5e52638SMatthew G. Knepley   if (dm == newdm) PetscFunctionReturn(0);
50909566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
50919566063dSJacob Faibussowitsch   PetscCall(DMClearFields(newdm));
5092e5e52638SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
5093e5e52638SMatthew G. Knepley     DMLabel     label;
5094e5e52638SMatthew G. Knepley     PetscObject field;
509534aa8a36SMatthew G. Knepley     PetscBool   useCone, useClosure;
5096e5e52638SMatthew G. Knepley 
50979566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, f, &label, &field));
50989566063dSJacob Faibussowitsch     PetscCall(DMSetField(newdm, f, label, field));
50999566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, f, &useCone, &useClosure));
51009566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(newdm, f, useCone, useClosure));
510134aa8a36SMatthew G. Knepley   }
510234aa8a36SMatthew G. Knepley   PetscFunctionReturn(0);
510334aa8a36SMatthew G. Knepley }
510434aa8a36SMatthew G. Knepley 
510534aa8a36SMatthew G. Knepley /*@
510634aa8a36SMatthew G. Knepley   DMGetAdjacency - Returns the flags for determining variable influence
510734aa8a36SMatthew G. Knepley 
510834aa8a36SMatthew G. Knepley   Not collective
510934aa8a36SMatthew G. Knepley 
511034aa8a36SMatthew G. Knepley   Input Parameters:
511134aa8a36SMatthew G. Knepley + dm - The DM object
511234aa8a36SMatthew G. Knepley - f  - The field number, or PETSC_DEFAULT for the default adjacency
511334aa8a36SMatthew G. Knepley 
5114d8d19677SJose E. Roman   Output Parameters:
511534aa8a36SMatthew G. Knepley + useCone    - Flag for variable influence starting with the cone operation
511634aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
511734aa8a36SMatthew G. Knepley 
511834aa8a36SMatthew G. Knepley   Notes:
511934aa8a36SMatthew G. Knepley $     FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
512034aa8a36SMatthew G. Knepley $     FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
512134aa8a36SMatthew G. Knepley $     FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
5122979e053dSMatthew G. Knepley   Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another.
512334aa8a36SMatthew G. Knepley 
512434aa8a36SMatthew G. Knepley   Level: developer
512534aa8a36SMatthew G. Knepley 
5126db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMGetField()`, `DMSetField()`
512734aa8a36SMatthew G. Knepley @*/
5128d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAdjacency(DM dm, PetscInt f, PetscBool *useCone, PetscBool *useClosure)
5129d71ae5a4SJacob Faibussowitsch {
513034aa8a36SMatthew G. Knepley   PetscFunctionBegin;
513134aa8a36SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5132534a8f05SLisandro Dalcin   if (useCone) PetscValidBoolPointer(useCone, 3);
5133534a8f05SLisandro Dalcin   if (useClosure) PetscValidBoolPointer(useClosure, 4);
513434aa8a36SMatthew G. Knepley   if (f < 0) {
513534aa8a36SMatthew G. Knepley     if (useCone) *useCone = dm->adjacency[0];
513634aa8a36SMatthew G. Knepley     if (useClosure) *useClosure = dm->adjacency[1];
513734aa8a36SMatthew G. Knepley   } else {
513834aa8a36SMatthew G. Knepley     PetscInt Nf;
513934aa8a36SMatthew G. Knepley 
51409566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
51417a8be351SBarry Smith     PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf);
514234aa8a36SMatthew G. Knepley     if (useCone) *useCone = dm->fields[f].adjacency[0];
514334aa8a36SMatthew G. Knepley     if (useClosure) *useClosure = dm->fields[f].adjacency[1];
514434aa8a36SMatthew G. Knepley   }
514534aa8a36SMatthew G. Knepley   PetscFunctionReturn(0);
514634aa8a36SMatthew G. Knepley }
514734aa8a36SMatthew G. Knepley 
514834aa8a36SMatthew G. Knepley /*@
514934aa8a36SMatthew G. Knepley   DMSetAdjacency - Set the flags for determining variable influence
515034aa8a36SMatthew G. Knepley 
515134aa8a36SMatthew G. Knepley   Not collective
515234aa8a36SMatthew G. Knepley 
515334aa8a36SMatthew G. Knepley   Input Parameters:
515434aa8a36SMatthew G. Knepley + dm         - The DM object
515534aa8a36SMatthew G. Knepley . f          - The field number
515634aa8a36SMatthew G. Knepley . useCone    - Flag for variable influence starting with the cone operation
515734aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
515834aa8a36SMatthew G. Knepley 
515934aa8a36SMatthew G. Knepley   Notes:
516034aa8a36SMatthew G. Knepley $     FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
516134aa8a36SMatthew G. Knepley $     FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
516234aa8a36SMatthew G. Knepley $     FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
5163979e053dSMatthew G. Knepley   Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another.
516434aa8a36SMatthew G. Knepley 
516534aa8a36SMatthew G. Knepley   Level: developer
516634aa8a36SMatthew G. Knepley 
5167db781477SPatrick Sanan .seealso: `DMGetAdjacency()`, `DMGetField()`, `DMSetField()`
516834aa8a36SMatthew G. Knepley @*/
5169d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAdjacency(DM dm, PetscInt f, PetscBool useCone, PetscBool useClosure)
5170d71ae5a4SJacob Faibussowitsch {
517134aa8a36SMatthew G. Knepley   PetscFunctionBegin;
517234aa8a36SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
517334aa8a36SMatthew G. Knepley   if (f < 0) {
517434aa8a36SMatthew G. Knepley     dm->adjacency[0] = useCone;
517534aa8a36SMatthew G. Knepley     dm->adjacency[1] = useClosure;
517634aa8a36SMatthew G. Knepley   } else {
517734aa8a36SMatthew G. Knepley     PetscInt Nf;
517834aa8a36SMatthew G. Knepley 
51799566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
51807a8be351SBarry Smith     PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf);
518134aa8a36SMatthew G. Knepley     dm->fields[f].adjacency[0] = useCone;
518234aa8a36SMatthew G. Knepley     dm->fields[f].adjacency[1] = useClosure;
5183e5e52638SMatthew G. Knepley   }
5184e5e52638SMatthew G. Knepley   PetscFunctionReturn(0);
5185e5e52638SMatthew G. Knepley }
5186e5e52638SMatthew G. Knepley 
5187b0441da4SMatthew G. Knepley /*@
5188b0441da4SMatthew G. Knepley   DMGetBasicAdjacency - Returns the flags for determining variable influence, using either the default or field 0 if it is defined
5189b0441da4SMatthew G. Knepley 
5190b0441da4SMatthew G. Knepley   Not collective
5191b0441da4SMatthew G. Knepley 
5192f899ff85SJose E. Roman   Input Parameter:
5193b0441da4SMatthew G. Knepley . dm - The DM object
5194b0441da4SMatthew G. Knepley 
5195d8d19677SJose E. Roman   Output Parameters:
5196b0441da4SMatthew G. Knepley + useCone    - Flag for variable influence starting with the cone operation
5197b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
5198b0441da4SMatthew G. Knepley 
5199b0441da4SMatthew G. Knepley   Notes:
5200b0441da4SMatthew G. Knepley $     FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
5201b0441da4SMatthew G. Knepley $     FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
5202b0441da4SMatthew G. Knepley $     FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
5203b0441da4SMatthew G. Knepley 
5204b0441da4SMatthew G. Knepley   Level: developer
5205b0441da4SMatthew G. Knepley 
5206db781477SPatrick Sanan .seealso: `DMSetBasicAdjacency()`, `DMGetField()`, `DMSetField()`
5207b0441da4SMatthew G. Knepley @*/
5208d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasicAdjacency(DM dm, PetscBool *useCone, PetscBool *useClosure)
5209d71ae5a4SJacob Faibussowitsch {
5210b0441da4SMatthew G. Knepley   PetscInt Nf;
5211b0441da4SMatthew G. Knepley 
5212b0441da4SMatthew G. Knepley   PetscFunctionBegin;
5213b0441da4SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5214064a246eSJacob Faibussowitsch   if (useCone) PetscValidBoolPointer(useCone, 2);
5215064a246eSJacob Faibussowitsch   if (useClosure) PetscValidBoolPointer(useClosure, 3);
52169566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
5217b0441da4SMatthew G. Knepley   if (!Nf) {
52189566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure));
5219b0441da4SMatthew G. Knepley   } else {
52209566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, 0, useCone, useClosure));
5221b0441da4SMatthew G. Knepley   }
5222b0441da4SMatthew G. Knepley   PetscFunctionReturn(0);
5223b0441da4SMatthew G. Knepley }
5224b0441da4SMatthew G. Knepley 
5225b0441da4SMatthew G. Knepley /*@
5226b0441da4SMatthew G. Knepley   DMSetBasicAdjacency - Set the flags for determining variable influence, using either the default or field 0 if it is defined
5227b0441da4SMatthew G. Knepley 
5228b0441da4SMatthew G. Knepley   Not collective
5229b0441da4SMatthew G. Knepley 
5230b0441da4SMatthew G. Knepley   Input Parameters:
5231b0441da4SMatthew G. Knepley + dm         - The DM object
5232b0441da4SMatthew G. Knepley . useCone    - Flag for variable influence starting with the cone operation
5233b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
5234b0441da4SMatthew G. Knepley 
5235b0441da4SMatthew G. Knepley   Notes:
5236b0441da4SMatthew G. Knepley $     FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
5237b0441da4SMatthew G. Knepley $     FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
5238b0441da4SMatthew G. Knepley $     FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
5239b0441da4SMatthew G. Knepley 
5240b0441da4SMatthew G. Knepley   Level: developer
5241b0441da4SMatthew G. Knepley 
5242db781477SPatrick Sanan .seealso: `DMGetBasicAdjacency()`, `DMGetField()`, `DMSetField()`
5243b0441da4SMatthew G. Knepley @*/
5244d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetBasicAdjacency(DM dm, PetscBool useCone, PetscBool useClosure)
5245d71ae5a4SJacob Faibussowitsch {
5246b0441da4SMatthew G. Knepley   PetscInt Nf;
5247b0441da4SMatthew G. Knepley 
5248b0441da4SMatthew G. Knepley   PetscFunctionBegin;
5249b0441da4SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
52509566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
5251b0441da4SMatthew G. Knepley   if (!Nf) {
52529566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure));
5253b0441da4SMatthew G. Knepley   } else {
52549566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, 0, useCone, useClosure));
5255e5e52638SMatthew G. Knepley   }
5256e5e52638SMatthew G. Knepley   PetscFunctionReturn(0);
5257e5e52638SMatthew G. Knepley }
5258e5e52638SMatthew G. Knepley 
5259d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompleteBCLabels_Internal(DM dm)
5260d71ae5a4SJacob Faibussowitsch {
5261799db056SMatthew G. Knepley   DM           plex;
5262799db056SMatthew G. Knepley   DMLabel     *labels, *glabels;
5263799db056SMatthew G. Knepley   const char **names;
5264799db056SMatthew G. Knepley   char        *sendNames, *recvNames;
5265799db056SMatthew G. Knepley   PetscInt     Nds, s, maxLabels = 0, maxLen = 0, gmaxLen, Nl = 0, gNl, l, gl, m;
5266799db056SMatthew G. Knepley   size_t       len;
5267799db056SMatthew G. Knepley   MPI_Comm     comm;
5268799db056SMatthew G. Knepley   PetscMPIInt  rank, size, p, *counts, *displs;
5269783e2ec8SMatthew G. Knepley 
5270783e2ec8SMatthew G. Knepley   PetscFunctionBegin;
5271799db056SMatthew G. Knepley   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
5272799db056SMatthew G. Knepley   PetscCallMPI(MPI_Comm_size(comm, &size));
5273799db056SMatthew G. Knepley   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5274799db056SMatthew G. Knepley   PetscCall(DMGetNumDS(dm, &Nds));
5275799db056SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5276799db056SMatthew G. Knepley     PetscDS  dsBC;
5277799db056SMatthew G. Knepley     PetscInt numBd;
5278799db056SMatthew G. Knepley 
5279799db056SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC));
5280799db056SMatthew G. Knepley     PetscCall(PetscDSGetNumBoundary(dsBC, &numBd));
5281799db056SMatthew G. Knepley     maxLabels += numBd;
5282799db056SMatthew G. Knepley   }
5283799db056SMatthew G. Knepley   PetscCall(PetscCalloc1(maxLabels, &labels));
5284799db056SMatthew G. Knepley   /* Get list of labels to be completed */
5285799db056SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5286799db056SMatthew G. Knepley     PetscDS  dsBC;
5287799db056SMatthew G. Knepley     PetscInt numBd, bd;
5288799db056SMatthew G. Knepley 
5289799db056SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC));
5290799db056SMatthew G. Knepley     PetscCall(PetscDSGetNumBoundary(dsBC, &numBd));
5291799db056SMatthew G. Knepley     for (bd = 0; bd < numBd; ++bd) {
5292799db056SMatthew G. Knepley       DMLabel      label;
5293799db056SMatthew G. Knepley       PetscInt     field;
5294799db056SMatthew G. Knepley       PetscObject  obj;
5295799db056SMatthew G. Knepley       PetscClassId id;
5296799db056SMatthew G. Knepley 
5297799db056SMatthew G. Knepley       PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL));
52989566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, &obj));
52999566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
5300799db056SMatthew G. Knepley       if (!(id == PETSCFE_CLASSID) || !label) continue;
53019371c9d4SSatish Balay       for (l = 0; l < Nl; ++l)
53029371c9d4SSatish Balay         if (labels[l] == label) break;
5303799db056SMatthew G. Knepley       if (l == Nl) labels[Nl++] = label;
5304783e2ec8SMatthew G. Knepley     }
5305799db056SMatthew G. Knepley   }
5306799db056SMatthew G. Knepley   /* Get label names */
5307799db056SMatthew G. Knepley   PetscCall(PetscMalloc1(Nl, &names));
5308799db056SMatthew G. Knepley   for (l = 0; l < Nl; ++l) PetscCall(PetscObjectGetName((PetscObject)labels[l], &names[l]));
53099371c9d4SSatish Balay   for (l = 0; l < Nl; ++l) {
53109371c9d4SSatish Balay     PetscCall(PetscStrlen(names[l], &len));
53119371c9d4SSatish Balay     maxLen = PetscMax(maxLen, (PetscInt)len + 2);
53129371c9d4SSatish Balay   }
5313799db056SMatthew G. Knepley   PetscCall(PetscFree(labels));
5314799db056SMatthew G. Knepley   PetscCallMPI(MPI_Allreduce(&maxLen, &gmaxLen, 1, MPIU_INT, MPI_MAX, comm));
5315799db056SMatthew G. Knepley   PetscCall(PetscCalloc1(Nl * gmaxLen, &sendNames));
5316799db056SMatthew G. Knepley   for (l = 0; l < Nl; ++l) PetscCall(PetscStrcpy(&sendNames[gmaxLen * l], names[l]));
5317799db056SMatthew G. Knepley   PetscCall(PetscFree(names));
5318799db056SMatthew G. Knepley   /* Put all names on all processes */
5319799db056SMatthew G. Knepley   PetscCall(PetscCalloc2(size, &counts, size + 1, &displs));
5320799db056SMatthew G. Knepley   PetscCallMPI(MPI_Allgather(&Nl, 1, MPI_INT, counts, 1, MPI_INT, comm));
5321799db056SMatthew G. Knepley   for (p = 0; p < size; ++p) displs[p + 1] = displs[p] + counts[p];
5322799db056SMatthew G. Knepley   gNl = displs[size];
53239371c9d4SSatish Balay   for (p = 0; p < size; ++p) {
53249371c9d4SSatish Balay     counts[p] *= gmaxLen;
53259371c9d4SSatish Balay     displs[p] *= gmaxLen;
53269371c9d4SSatish Balay   }
5327799db056SMatthew G. Knepley   PetscCall(PetscCalloc2(gNl * gmaxLen, &recvNames, gNl, &glabels));
5328799db056SMatthew G. Knepley   PetscCallMPI(MPI_Allgatherv(sendNames, counts[rank], MPI_CHAR, recvNames, counts, displs, MPI_CHAR, comm));
5329799db056SMatthew G. Knepley   PetscCall(PetscFree2(counts, displs));
5330799db056SMatthew G. Knepley   PetscCall(PetscFree(sendNames));
5331799db056SMatthew G. Knepley   for (l = 0, gl = 0; l < gNl; ++l) {
5332799db056SMatthew G. Knepley     PetscCall(DMGetLabel(dm, &recvNames[l * gmaxLen], &glabels[gl]));
5333799db056SMatthew G. Knepley     PetscCheck(glabels[gl], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Label %s missing on rank %d", &recvNames[l * gmaxLen], rank);
53349371c9d4SSatish Balay     for (m = 0; m < gl; ++m)
53359371c9d4SSatish Balay       if (glabels[m] == glabels[gl]) continue;
53369566063dSJacob Faibussowitsch     PetscCall(DMConvert(dm, DMPLEX, &plex));
5337799db056SMatthew G. Knepley     PetscCall(DMPlexLabelComplete(plex, glabels[gl]));
53389566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&plex));
5339799db056SMatthew G. Knepley     ++gl;
5340783e2ec8SMatthew G. Knepley   }
5341799db056SMatthew G. Knepley   PetscCall(PetscFree2(recvNames, glabels));
5342783e2ec8SMatthew G. Knepley   PetscFunctionReturn(0);
5343783e2ec8SMatthew G. Knepley }
5344783e2ec8SMatthew G. Knepley 
5345d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDSEnlarge_Static(DM dm, PetscInt NdsNew)
5346d71ae5a4SJacob Faibussowitsch {
5347e5e52638SMatthew G. Knepley   DMSpace *tmpd;
5348e5e52638SMatthew G. Knepley   PetscInt Nds = dm->Nds, s;
5349e5e52638SMatthew G. Knepley 
5350e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5351e5e52638SMatthew G. Knepley   if (Nds >= NdsNew) PetscFunctionReturn(0);
53529566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(NdsNew, &tmpd));
5353e5e52638SMatthew G. Knepley   for (s = 0; s < Nds; ++s) tmpd[s] = dm->probs[s];
53549371c9d4SSatish Balay   for (s = Nds; s < NdsNew; ++s) {
53559371c9d4SSatish Balay     tmpd[s].ds     = NULL;
53569371c9d4SSatish Balay     tmpd[s].label  = NULL;
53579371c9d4SSatish Balay     tmpd[s].fields = NULL;
53589371c9d4SSatish Balay   }
53599566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->probs));
5360e5e52638SMatthew G. Knepley   dm->Nds   = NdsNew;
5361e5e52638SMatthew G. Knepley   dm->probs = tmpd;
5362e5e52638SMatthew G. Knepley   PetscFunctionReturn(0);
5363e5e52638SMatthew G. Knepley }
5364e5e52638SMatthew G. Knepley 
5365e5e52638SMatthew G. Knepley /*@
5366e5e52638SMatthew G. Knepley   DMGetNumDS - Get the number of discrete systems in the DM
5367e5e52638SMatthew G. Knepley 
5368e5e52638SMatthew G. Knepley   Not collective
5369e5e52638SMatthew G. Knepley 
5370e5e52638SMatthew G. Knepley   Input Parameter:
5371e5e52638SMatthew G. Knepley . dm - The DM
5372e5e52638SMatthew G. Knepley 
5373e5e52638SMatthew G. Knepley   Output Parameter:
5374e5e52638SMatthew G. Knepley . Nds - The number of PetscDS objects
5375e5e52638SMatthew G. Knepley 
5376e5e52638SMatthew G. Knepley   Level: intermediate
5377e5e52638SMatthew G. Knepley 
5378db781477SPatrick Sanan .seealso: `DMGetDS()`, `DMGetCellDS()`
5379e5e52638SMatthew G. Knepley @*/
5380d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumDS(DM dm, PetscInt *Nds)
5381d71ae5a4SJacob Faibussowitsch {
5382e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5383e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5384534a8f05SLisandro Dalcin   PetscValidIntPointer(Nds, 2);
5385e5e52638SMatthew G. Knepley   *Nds = dm->Nds;
5386e5e52638SMatthew G. Knepley   PetscFunctionReturn(0);
5387e5e52638SMatthew G. Knepley }
5388e5e52638SMatthew G. Knepley 
5389e5e52638SMatthew G. Knepley /*@
5390e5e52638SMatthew G. Knepley   DMClearDS - Remove all discrete systems from the DM
5391e5e52638SMatthew G. Knepley 
5392d083f849SBarry Smith   Logically collective on dm
5393e5e52638SMatthew G. Knepley 
5394e5e52638SMatthew G. Knepley   Input Parameter:
5395e5e52638SMatthew G. Knepley . dm - The DM
5396e5e52638SMatthew G. Knepley 
5397e5e52638SMatthew G. Knepley   Level: intermediate
5398e5e52638SMatthew G. Knepley 
5399db781477SPatrick Sanan .seealso: `DMGetNumDS()`, `DMGetDS()`, `DMSetField()`
5400e5e52638SMatthew G. Knepley @*/
5401d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearDS(DM dm)
5402d71ae5a4SJacob Faibussowitsch {
5403e5e52638SMatthew G. Knepley   PetscInt s;
5404e5e52638SMatthew G. Knepley 
5405e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5406e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5407e5e52638SMatthew G. Knepley   for (s = 0; s < dm->Nds; ++s) {
54089566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dm->probs[s].ds));
54099566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&dm->probs[s].label));
54109566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&dm->probs[s].fields));
5411e5e52638SMatthew G. Knepley   }
54129566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->probs));
5413e5e52638SMatthew G. Knepley   dm->probs = NULL;
5414e5e52638SMatthew G. Knepley   dm->Nds   = 0;
5415e5e52638SMatthew G. Knepley   PetscFunctionReturn(0);
5416e5e52638SMatthew G. Knepley }
5417e5e52638SMatthew G. Knepley 
5418e5e52638SMatthew G. Knepley /*@
5419e5e52638SMatthew G. Knepley   DMGetDS - Get the default PetscDS
5420e5e52638SMatthew G. Knepley 
5421e5e52638SMatthew G. Knepley   Not collective
5422e5e52638SMatthew G. Knepley 
5423e5e52638SMatthew G. Knepley   Input Parameter:
5424e5e52638SMatthew G. Knepley . dm    - The DM
5425e5e52638SMatthew G. Knepley 
5426e5e52638SMatthew G. Knepley   Output Parameter:
5427e5e52638SMatthew G. Knepley . prob - The default PetscDS
5428e5e52638SMatthew G. Knepley 
5429e5e52638SMatthew G. Knepley   Level: intermediate
5430e5e52638SMatthew G. Knepley 
5431db781477SPatrick Sanan .seealso: `DMGetCellDS()`, `DMGetRegionDS()`
5432e5e52638SMatthew G. Knepley @*/
5433d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDS(DM dm, PetscDS *prob)
5434d71ae5a4SJacob Faibussowitsch {
5435e5e52638SMatthew G. Knepley   PetscFunctionBeginHot;
5436e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5437e5e52638SMatthew G. Knepley   PetscValidPointer(prob, 2);
5438b0143b4dSMatthew G. Knepley   if (dm->Nds <= 0) {
5439b0143b4dSMatthew G. Knepley     PetscDS ds;
5440b0143b4dSMatthew G. Knepley 
54419566063dSJacob Faibussowitsch     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds));
54429566063dSJacob Faibussowitsch     PetscCall(DMSetRegionDS(dm, NULL, NULL, ds));
54439566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&ds));
5444b0143b4dSMatthew G. Knepley   }
5445b0143b4dSMatthew G. Knepley   *prob = dm->probs[0].ds;
5446e5e52638SMatthew G. Knepley   PetscFunctionReturn(0);
5447e5e52638SMatthew G. Knepley }
5448e5e52638SMatthew G. Knepley 
5449e5e52638SMatthew G. Knepley /*@
5450e5e52638SMatthew G. Knepley   DMGetCellDS - Get the PetscDS defined on a given cell
5451e5e52638SMatthew G. Knepley 
5452e5e52638SMatthew G. Knepley   Not collective
5453e5e52638SMatthew G. Knepley 
5454e5e52638SMatthew G. Knepley   Input Parameters:
5455e5e52638SMatthew G. Knepley + dm    - The DM
5456e5e52638SMatthew G. Knepley - point - Cell for the DS
5457e5e52638SMatthew G. Knepley 
5458e5e52638SMatthew G. Knepley   Output Parameter:
5459e5e52638SMatthew G. Knepley . prob - The PetscDS defined on the given cell
5460e5e52638SMatthew G. Knepley 
5461e5e52638SMatthew G. Knepley   Level: developer
5462e5e52638SMatthew G. Knepley 
5463db781477SPatrick Sanan .seealso: `DMGetDS()`, `DMSetRegionDS()`
5464e5e52638SMatthew G. Knepley @*/
5465d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCellDS(DM dm, PetscInt point, PetscDS *prob)
5466d71ae5a4SJacob Faibussowitsch {
5467e5e52638SMatthew G. Knepley   PetscDS  probDef = NULL;
5468e5e52638SMatthew G. Knepley   PetscInt s;
5469e5e52638SMatthew G. Knepley 
5470e5e52638SMatthew G. Knepley   PetscFunctionBeginHot;
5471e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5472e5e52638SMatthew G. Knepley   PetscValidPointer(prob, 3);
547363a3b9bcSJacob Faibussowitsch   PetscCheck(point >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Mesh point cannot be negative: %" PetscInt_FMT, point);
5474e5e52638SMatthew G. Knepley   *prob = NULL;
5475e5e52638SMatthew G. Knepley   for (s = 0; s < dm->Nds; ++s) {
5476e5e52638SMatthew G. Knepley     PetscInt val;
5477e5e52638SMatthew G. Knepley 
54789371c9d4SSatish Balay     if (!dm->probs[s].label) {
54799371c9d4SSatish Balay       probDef = dm->probs[s].ds;
54809371c9d4SSatish Balay     } else {
54819566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(dm->probs[s].label, point, &val));
54829371c9d4SSatish Balay       if (val >= 0) {
54839371c9d4SSatish Balay         *prob = dm->probs[s].ds;
54849371c9d4SSatish Balay         break;
54859371c9d4SSatish Balay       }
5486e5e52638SMatthew G. Knepley     }
5487e5e52638SMatthew G. Knepley   }
5488e5e52638SMatthew G. Knepley   if (!*prob) *prob = probDef;
5489e5e52638SMatthew G. Knepley   PetscFunctionReturn(0);
5490e5e52638SMatthew G. Knepley }
5491e5e52638SMatthew G. Knepley 
5492e5e52638SMatthew G. Knepley /*@
5493e5e52638SMatthew G. Knepley   DMGetRegionDS - Get the PetscDS for a given mesh region, defined by a DMLabel
5494e5e52638SMatthew G. Knepley 
5495e5e52638SMatthew G. Knepley   Not collective
5496e5e52638SMatthew G. Knepley 
5497e5e52638SMatthew G. Knepley   Input Parameters:
5498e5e52638SMatthew G. Knepley + dm    - The DM
5499e5e52638SMatthew G. Knepley - label - The DMLabel defining the mesh region, or NULL for the entire mesh
5500e5e52638SMatthew G. Knepley 
5501b3cf3223SMatthew G. Knepley   Output Parameters:
5502b3cf3223SMatthew G. Knepley + fields - The IS containing the DM field numbers for the fields in this DS, or NULL
5503b3cf3223SMatthew G. Knepley - prob - The PetscDS defined on the given region, or NULL
5504e5e52638SMatthew G. Knepley 
5505154ca461SJed Brown   Note:
5506154ca461SJed Brown   If a non-NULL label is given, but there is no PetscDS on that specific label,
5507154ca461SJed Brown   the PetscDS for the full domain (if present) is returned. Returns with
5508154ca461SJed Brown   fields=NULL and prob=NULL if there is no PetscDS for the full domain.
5509e5e52638SMatthew G. Knepley 
5510e5e52638SMatthew G. Knepley   Level: advanced
5511e5e52638SMatthew G. Knepley 
5512db781477SPatrick Sanan .seealso: `DMGetRegionNumDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5513e5e52638SMatthew G. Knepley @*/
5514d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRegionDS(DM dm, DMLabel label, IS *fields, PetscDS *ds)
5515d71ae5a4SJacob Faibussowitsch {
5516e5e52638SMatthew G. Knepley   PetscInt Nds = dm->Nds, s;
5517e5e52638SMatthew G. Knepley 
5518e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5519e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5520e5e52638SMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
55219371c9d4SSatish Balay   if (fields) {
55229371c9d4SSatish Balay     PetscValidPointer(fields, 3);
55239371c9d4SSatish Balay     *fields = NULL;
55249371c9d4SSatish Balay   }
55259371c9d4SSatish Balay   if (ds) {
55269371c9d4SSatish Balay     PetscValidPointer(ds, 4);
55279371c9d4SSatish Balay     *ds = NULL;
55289371c9d4SSatish Balay   }
5529e5e52638SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5530154ca461SJed Brown     if (dm->probs[s].label == label || !dm->probs[s].label) {
5531b3cf3223SMatthew G. Knepley       if (fields) *fields = dm->probs[s].fields;
5532b3cf3223SMatthew G. Knepley       if (ds) *ds = dm->probs[s].ds;
5533154ca461SJed Brown       if (dm->probs[s].label) PetscFunctionReturn(0);
5534b3cf3223SMatthew G. Knepley     }
5535e5e52638SMatthew G. Knepley   }
55362df9ee95SMatthew G. Knepley   PetscFunctionReturn(0);
5537e5e52638SMatthew G. Knepley }
5538e5e52638SMatthew G. Knepley 
5539e5e52638SMatthew G. Knepley /*@
5540bb7acecfSBarry Smith   DMSetRegionDS - Set the `PetscDS` for a given mesh region, defined by a `DMLabel`
5541083401c6SMatthew G. Knepley 
5542083401c6SMatthew G. Knepley   Collective on dm
5543083401c6SMatthew G. Knepley 
5544083401c6SMatthew G. Knepley   Input Parameters:
5545bb7acecfSBarry Smith + dm     - The `DM`
5546bb7acecfSBarry Smith . label  - The `DMLabel` defining the mesh region, or NULL for the entire mesh
5547bb7acecfSBarry Smith . fields - The IS containing the `DM` field numbers for the fields in this `PetscDS`, or NULL for all fields
5548bb7acecfSBarry Smith - prob   - The `PetscDS` defined on the given region
5549083401c6SMatthew G. Knepley 
5550bb7acecfSBarry Smith   Note:
5551bb7acecfSBarry Smith   If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`. If the `PetscDS` is replaced,
5552083401c6SMatthew G. Knepley   the fields argument is ignored.
5553083401c6SMatthew G. Knepley 
5554083401c6SMatthew G. Knepley   Level: advanced
5555083401c6SMatthew G. Knepley 
5556db781477SPatrick Sanan .seealso: `DMGetRegionDS()`, `DMSetRegionNumDS()`, `DMGetDS()`, `DMGetCellDS()`
5557083401c6SMatthew G. Knepley @*/
5558d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRegionDS(DM dm, DMLabel label, IS fields, PetscDS ds)
5559d71ae5a4SJacob Faibussowitsch {
5560083401c6SMatthew G. Knepley   PetscInt Nds = dm->Nds, s;
5561083401c6SMatthew G. Knepley 
5562083401c6SMatthew G. Knepley   PetscFunctionBegin;
5563083401c6SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5564083401c6SMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
5565064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 4);
5566083401c6SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5567083401c6SMatthew G. Knepley     if (dm->probs[s].label == label) {
55689566063dSJacob Faibussowitsch       PetscCall(PetscDSDestroy(&dm->probs[s].ds));
5569083401c6SMatthew G. Knepley       dm->probs[s].ds = ds;
5570083401c6SMatthew G. Knepley       PetscFunctionReturn(0);
5571083401c6SMatthew G. Knepley     }
5572083401c6SMatthew G. Knepley   }
55739566063dSJacob Faibussowitsch   PetscCall(DMDSEnlarge_Static(dm, Nds + 1));
55749566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
55759566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)fields));
55769566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)ds));
5577083401c6SMatthew G. Knepley   if (!label) {
5578083401c6SMatthew G. Knepley     /* Put the NULL label at the front, so it is returned as the default */
5579083401c6SMatthew G. Knepley     for (s = Nds - 1; s >= 0; --s) dm->probs[s + 1] = dm->probs[s];
5580083401c6SMatthew G. Knepley     Nds = 0;
5581083401c6SMatthew G. Knepley   }
5582083401c6SMatthew G. Knepley   dm->probs[Nds].label  = label;
5583083401c6SMatthew G. Knepley   dm->probs[Nds].fields = fields;
5584083401c6SMatthew G. Knepley   dm->probs[Nds].ds     = ds;
5585083401c6SMatthew G. Knepley   PetscFunctionReturn(0);
5586083401c6SMatthew G. Knepley }
5587083401c6SMatthew G. Knepley 
5588083401c6SMatthew G. Knepley /*@
5589e5e52638SMatthew G. Knepley   DMGetRegionNumDS - Get the PetscDS for a given mesh region, defined by the region number
5590e5e52638SMatthew G. Knepley 
5591e5e52638SMatthew G. Knepley   Not collective
5592e5e52638SMatthew G. Knepley 
5593e5e52638SMatthew G. Knepley   Input Parameters:
5594e5e52638SMatthew G. Knepley + dm  - The DM
5595e5e52638SMatthew G. Knepley - num - The region number, in [0, Nds)
5596e5e52638SMatthew G. Knepley 
5597e5e52638SMatthew G. Knepley   Output Parameters:
5598b3cf3223SMatthew G. Knepley + label  - The region label, or NULL
5599b3cf3223SMatthew G. Knepley . fields - The IS containing the DM field numbers for the fields in this DS, or NULL
5600083401c6SMatthew G. Knepley - ds     - The PetscDS defined on the given region, or NULL
5601e5e52638SMatthew G. Knepley 
5602e5e52638SMatthew G. Knepley   Level: advanced
5603e5e52638SMatthew G. Knepley 
5604db781477SPatrick Sanan .seealso: `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5605e5e52638SMatthew G. Knepley @*/
5606d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRegionNumDS(DM dm, PetscInt num, DMLabel *label, IS *fields, PetscDS *ds)
5607d71ae5a4SJacob Faibussowitsch {
5608e5e52638SMatthew G. Knepley   PetscInt Nds;
5609e5e52638SMatthew G. Knepley 
5610e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5611e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
56129566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
561363a3b9bcSJacob Faibussowitsch   PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds);
5614e5e52638SMatthew G. Knepley   if (label) {
5615e5e52638SMatthew G. Knepley     PetscValidPointer(label, 3);
5616e5e52638SMatthew G. Knepley     *label = dm->probs[num].label;
5617e5e52638SMatthew G. Knepley   }
5618b3cf3223SMatthew G. Knepley   if (fields) {
5619b3cf3223SMatthew G. Knepley     PetscValidPointer(fields, 4);
5620b3cf3223SMatthew G. Knepley     *fields = dm->probs[num].fields;
5621b3cf3223SMatthew G. Knepley   }
5622e5e52638SMatthew G. Knepley   if (ds) {
5623b3cf3223SMatthew G. Knepley     PetscValidPointer(ds, 5);
5624e5e52638SMatthew G. Knepley     *ds = dm->probs[num].ds;
5625e5e52638SMatthew G. Knepley   }
5626e5e52638SMatthew G. Knepley   PetscFunctionReturn(0);
5627e5e52638SMatthew G. Knepley }
5628e5e52638SMatthew G. Knepley 
5629e5e52638SMatthew G. Knepley /*@
5630083401c6SMatthew G. Knepley   DMSetRegionNumDS - Set the PetscDS for a given mesh region, defined by the region number
5631e5e52638SMatthew G. Knepley 
5632083401c6SMatthew G. Knepley   Not collective
5633e5e52638SMatthew G. Knepley 
5634e5e52638SMatthew G. Knepley   Input Parameters:
5635e5e52638SMatthew G. Knepley + dm     - The DM
5636083401c6SMatthew G. Knepley . num    - The region number, in [0, Nds)
5637083401c6SMatthew G. Knepley . label  - The region label, or NULL
5638083401c6SMatthew G. Knepley . fields - The IS containing the DM field numbers for the fields in this DS, or NULL to prevent setting
5639083401c6SMatthew G. Knepley - ds     - The PetscDS defined on the given region, or NULL to prevent setting
5640e5e52638SMatthew G. Knepley 
5641e5e52638SMatthew G. Knepley   Level: advanced
5642e5e52638SMatthew G. Knepley 
5643db781477SPatrick Sanan .seealso: `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5644e5e52638SMatthew G. Knepley @*/
5645d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRegionNumDS(DM dm, PetscInt num, DMLabel label, IS fields, PetscDS ds)
5646d71ae5a4SJacob Faibussowitsch {
5647083401c6SMatthew G. Knepley   PetscInt Nds;
5648e5e52638SMatthew G. Knepley 
5649e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5650e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5651ad540459SPierre Jolivet   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3);
56529566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
565363a3b9bcSJacob Faibussowitsch   PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds);
56549566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
56559566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&dm->probs[num].label));
5656083401c6SMatthew G. Knepley   dm->probs[num].label = label;
5657083401c6SMatthew G. Knepley   if (fields) {
5658083401c6SMatthew G. Knepley     PetscValidHeaderSpecific(fields, IS_CLASSID, 4);
56599566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)fields));
56609566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&dm->probs[num].fields));
5661083401c6SMatthew G. Knepley     dm->probs[num].fields = fields;
5662e5e52638SMatthew G. Knepley   }
5663083401c6SMatthew G. Knepley   if (ds) {
5664083401c6SMatthew G. Knepley     PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 5);
56659566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)ds));
56669566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dm->probs[num].ds));
5667083401c6SMatthew G. Knepley     dm->probs[num].ds = ds;
5668083401c6SMatthew G. Knepley   }
5669e5e52638SMatthew G. Knepley   PetscFunctionReturn(0);
5670e5e52638SMatthew G. Knepley }
5671e5e52638SMatthew G. Knepley 
5672e5e52638SMatthew G. Knepley /*@
56731d3af9e0SMatthew G. Knepley   DMFindRegionNum - Find the region number for a given PetscDS, or -1 if it is not found.
56741d3af9e0SMatthew G. Knepley 
56751d3af9e0SMatthew G. Knepley   Not collective
56761d3af9e0SMatthew G. Knepley 
56771d3af9e0SMatthew G. Knepley   Input Parameters:
56781d3af9e0SMatthew G. Knepley + dm  - The DM
56791d3af9e0SMatthew G. Knepley - ds  - The PetscDS defined on the given region
56801d3af9e0SMatthew G. Knepley 
56811d3af9e0SMatthew G. Knepley   Output Parameter:
56821d3af9e0SMatthew G. Knepley . num - The region number, in [0, Nds), or -1 if not found
56831d3af9e0SMatthew G. Knepley 
56841d3af9e0SMatthew G. Knepley   Level: advanced
56851d3af9e0SMatthew G. Knepley 
5686db781477SPatrick Sanan .seealso: `DMGetRegionNumDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
56871d3af9e0SMatthew G. Knepley @*/
5688d71ae5a4SJacob Faibussowitsch PetscErrorCode DMFindRegionNum(DM dm, PetscDS ds, PetscInt *num)
5689d71ae5a4SJacob Faibussowitsch {
56901d3af9e0SMatthew G. Knepley   PetscInt Nds, n;
56911d3af9e0SMatthew G. Knepley 
56921d3af9e0SMatthew G. Knepley   PetscFunctionBegin;
56931d3af9e0SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
56941d3af9e0SMatthew G. Knepley   PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 2);
5695dadcf809SJacob Faibussowitsch   PetscValidIntPointer(num, 3);
56969566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
56979371c9d4SSatish Balay   for (n = 0; n < Nds; ++n)
56989371c9d4SSatish Balay     if (ds == dm->probs[n].ds) break;
56991d3af9e0SMatthew G. Knepley   if (n >= Nds) *num = -1;
57001d3af9e0SMatthew G. Knepley   else *num = n;
57011d3af9e0SMatthew G. Knepley   PetscFunctionReturn(0);
57021d3af9e0SMatthew G. Knepley }
57031d3af9e0SMatthew G. Knepley 
57042df84da0SMatthew G. Knepley /*@C
5705bb7acecfSBarry Smith   DMCreateFEDefault - Create a `PetscFE` based on the celltype for the mesh
57062df84da0SMatthew G. Knepley 
57072df84da0SMatthew G. Knepley   Not collective
57082df84da0SMatthew G. Knepley 
5709f1a722f8SMatthew G. Knepley   Input Parameters:
5710bb7acecfSBarry Smith + dm     - The `DM`
57112df84da0SMatthew G. Knepley . Nc     - The number of components for the field
5712bb7acecfSBarry Smith . prefix - The options prefix for the output `PetscFE`, or NULL
5713bb7acecfSBarry Smith - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree
57142df84da0SMatthew G. Knepley 
57152df84da0SMatthew G. Knepley   Output Parameter:
5716bb7acecfSBarry Smith . fem - The `PetscFE`
57172df84da0SMatthew G. Knepley 
5718bb7acecfSBarry Smith   Note:
5719bb7acecfSBarry Smith   This is a convenience method that just calls `PetscFECreateByCell()` underneath.
57202df84da0SMatthew G. Knepley 
57212df84da0SMatthew G. Knepley   Level: intermediate
57222df84da0SMatthew G. Knepley 
5723db781477SPatrick Sanan .seealso: `PetscFECreateByCell()`, `DMAddField()`, `DMCreateDS()`, `DMGetCellDS()`, `DMGetRegionDS()`
57242df84da0SMatthew G. Knepley @*/
5725d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFEDefault(DM dm, PetscInt Nc, const char prefix[], PetscInt qorder, PetscFE *fem)
5726d71ae5a4SJacob Faibussowitsch {
57272df84da0SMatthew G. Knepley   DMPolytopeType ct;
57282df84da0SMatthew G. Knepley   PetscInt       dim, cStart;
57292df84da0SMatthew G. Knepley 
57302df84da0SMatthew G. Knepley   PetscFunctionBegin;
57312df84da0SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
57322df84da0SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, Nc, 2);
57332df84da0SMatthew G. Knepley   if (prefix) PetscValidCharPointer(prefix, 3);
57342df84da0SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, qorder, 4);
57352df84da0SMatthew G. Knepley   PetscValidPointer(fem, 5);
57369566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
57379566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL));
57389566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCellType(dm, cStart, &ct));
57399566063dSJacob Faibussowitsch   PetscCall(PetscFECreateByCell(PETSC_COMM_SELF, dim, Nc, ct, prefix, qorder, fem));
57402df84da0SMatthew G. Knepley   PetscFunctionReturn(0);
57412df84da0SMatthew G. Knepley }
57422df84da0SMatthew G. Knepley 
57431d3af9e0SMatthew G. Knepley /*@
5744bb7acecfSBarry Smith   DMCreateDS - Create the discrete systems for the `DM` based upon the fields added to the `DM`
5745e5e52638SMatthew G. Knepley 
5746d083f849SBarry Smith   Collective on dm
5747e5e52638SMatthew G. Knepley 
5748e5e52638SMatthew G. Knepley   Input Parameter:
5749bb7acecfSBarry Smith . dm - The `DM`
5750e5e52638SMatthew G. Knepley 
575145480ffeSMatthew G. Knepley   Options Database Keys:
5752bb7acecfSBarry Smith . -dm_petscds_view - View all the `PetscDS` objects in this `DM`
575345480ffeSMatthew G. Knepley 
5754bb7acecfSBarry Smith   Note:
5755bb7acecfSBarry Smith   If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`.
5756e5e52638SMatthew G. Knepley 
5757e5e52638SMatthew G. Knepley   Level: intermediate
5758e5e52638SMatthew G. Knepley 
5759db781477SPatrick Sanan .seealso: `DMSetField`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`
5760e5e52638SMatthew G. Knepley @*/
5761d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDS(DM dm)
5762d71ae5a4SJacob Faibussowitsch {
5763e5e52638SMatthew G. Knepley   MPI_Comm  comm;
5764083401c6SMatthew G. Knepley   PetscDS   dsDef;
5765083401c6SMatthew G. Knepley   DMLabel  *labelSet;
5766f9244615SMatthew G. Knepley   PetscInt  dE, Nf = dm->Nf, f, s, Nl, l, Ndef, k;
5767f9244615SMatthew G. Knepley   PetscBool doSetup = PETSC_TRUE, flg;
5768e5e52638SMatthew G. Knepley 
5769e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5770e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5771e5e52638SMatthew G. Knepley   if (!dm->fields) PetscFunctionReturn(0);
57729566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
57739566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dE));
5774083401c6SMatthew G. Knepley   /* Determine how many regions we have */
57759566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Nf, &labelSet));
5776083401c6SMatthew G. Knepley   Nl   = 0;
5777083401c6SMatthew G. Knepley   Ndef = 0;
5778083401c6SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
5779083401c6SMatthew G. Knepley     DMLabel  label = dm->fields[f].label;
5780083401c6SMatthew G. Knepley     PetscInt l;
5781083401c6SMatthew G. Knepley 
5782f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED
5783f918ec44SMatthew G. Knepley     /* Move CEED context to discretizations */
5784f918ec44SMatthew G. Knepley     {
5785f918ec44SMatthew G. Knepley       PetscClassId id;
5786f918ec44SMatthew G. Knepley 
57879566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(dm->fields[f].disc, &id));
5788f918ec44SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
5789f918ec44SMatthew G. Knepley         Ceed ceed;
5790f918ec44SMatthew G. Knepley 
57919566063dSJacob Faibussowitsch         PetscCall(DMGetCeed(dm, &ceed));
57929566063dSJacob Faibussowitsch         PetscCall(PetscFESetCeed((PetscFE)dm->fields[f].disc, ceed));
5793f918ec44SMatthew G. Knepley       }
5794f918ec44SMatthew G. Knepley     }
5795f918ec44SMatthew G. Knepley #endif
57969371c9d4SSatish Balay     if (!label) {
57979371c9d4SSatish Balay       ++Ndef;
57989371c9d4SSatish Balay       continue;
57999371c9d4SSatish Balay     }
58009371c9d4SSatish Balay     for (l = 0; l < Nl; ++l)
58019371c9d4SSatish Balay       if (label == labelSet[l]) break;
5802083401c6SMatthew G. Knepley     if (l < Nl) continue;
5803083401c6SMatthew G. Knepley     labelSet[Nl++] = label;
5804083401c6SMatthew G. Knepley   }
5805083401c6SMatthew G. Knepley   /* Create default DS if there are no labels to intersect with */
58069566063dSJacob Faibussowitsch   PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef));
5807083401c6SMatthew G. Knepley   if (!dsDef && Ndef && !Nl) {
5808b3cf3223SMatthew G. Knepley     IS        fields;
5809b3cf3223SMatthew G. Knepley     PetscInt *fld, nf;
5810b3cf3223SMatthew G. Knepley 
58119371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
58129371c9d4SSatish Balay       if (!dm->fields[f].label) ++nf;
58137a8be351SBarry Smith     PetscCheck(nf, comm, PETSC_ERR_PLIB, "All fields have labels, but we are trying to create a default DS");
58149566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nf, &fld));
58159371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
58169371c9d4SSatish Balay       if (!dm->fields[f].label) fld[nf++] = f;
58179566063dSJacob Faibussowitsch     PetscCall(ISCreate(PETSC_COMM_SELF, &fields));
58189566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_"));
58199566063dSJacob Faibussowitsch     PetscCall(ISSetType(fields, ISGENERAL));
58209566063dSJacob Faibussowitsch     PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER));
582188f0c812SMatthew G. Knepley 
58229566063dSJacob Faibussowitsch     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef));
58239566063dSJacob Faibussowitsch     PetscCall(DMSetRegionDS(dm, NULL, fields, dsDef));
58249566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dsDef));
58259566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&fields));
58262df9ee95SMatthew G. Knepley   }
58279566063dSJacob Faibussowitsch   PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef));
58289566063dSJacob Faibussowitsch   if (dsDef) PetscCall(PetscDSSetCoordinateDimension(dsDef, dE));
5829083401c6SMatthew G. Knepley   /* Intersect labels with default fields */
5830083401c6SMatthew G. Knepley   if (Ndef && Nl) {
58310122748bSMatthew G. Knepley     DM              plex;
5832083401c6SMatthew G. Knepley     DMLabel         cellLabel;
5833083401c6SMatthew G. Knepley     IS              fieldIS, allcellIS, defcellIS = NULL;
5834083401c6SMatthew G. Knepley     PetscInt       *fields;
5835083401c6SMatthew G. Knepley     const PetscInt *cells;
5836083401c6SMatthew G. Knepley     PetscInt        depth, nf = 0, n, c;
58370122748bSMatthew G. Knepley 
58389566063dSJacob Faibussowitsch     PetscCall(DMConvert(dm, DMPLEX, &plex));
58399566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepth(plex, &depth));
58409566063dSJacob Faibussowitsch     PetscCall(DMGetStratumIS(plex, "dim", depth, &allcellIS));
58419566063dSJacob Faibussowitsch     if (!allcellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &allcellIS));
58425fedec97SMatthew G. Knepley     /* TODO This looks like it only works for one label */
5843083401c6SMatthew G. Knepley     for (l = 0; l < Nl; ++l) {
5844083401c6SMatthew G. Knepley       DMLabel label = labelSet[l];
5845083401c6SMatthew G. Knepley       IS      pointIS;
5846083401c6SMatthew G. Knepley 
58479566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&defcellIS));
58489566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(label, 1, &pointIS));
58499566063dSJacob Faibussowitsch       PetscCall(ISDifference(allcellIS, pointIS, &defcellIS));
58509566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
5851083401c6SMatthew G. Knepley     }
58529566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&allcellIS));
5853083401c6SMatthew G. Knepley 
58549566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, "defaultCells", &cellLabel));
58559566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(defcellIS, &n));
58569566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(defcellIS, &cells));
58579566063dSJacob Faibussowitsch     for (c = 0; c < n; ++c) PetscCall(DMLabelSetValue(cellLabel, cells[c], 1));
58589566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(defcellIS, &cells));
58599566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&defcellIS));
58609566063dSJacob Faibussowitsch     PetscCall(DMPlexLabelComplete(plex, cellLabel));
5861083401c6SMatthew G. Knepley 
58629566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Ndef, &fields));
58639371c9d4SSatish Balay     for (f = 0; f < Nf; ++f)
58649371c9d4SSatish Balay       if (!dm->fields[f].label) fields[nf++] = f;
58659566063dSJacob Faibussowitsch     PetscCall(ISCreate(PETSC_COMM_SELF, &fieldIS));
58669566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fieldIS, "dm_fields_"));
58679566063dSJacob Faibussowitsch     PetscCall(ISSetType(fieldIS, ISGENERAL));
58689566063dSJacob Faibussowitsch     PetscCall(ISGeneralSetIndices(fieldIS, nf, fields, PETSC_OWN_POINTER));
5869083401c6SMatthew G. Knepley 
58709566063dSJacob Faibussowitsch     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef));
58719566063dSJacob Faibussowitsch     PetscCall(DMSetRegionDS(dm, cellLabel, fieldIS, dsDef));
58729566063dSJacob Faibussowitsch     PetscCall(PetscDSSetCoordinateDimension(dsDef, dE));
58739566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&cellLabel));
58749566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dsDef));
58759566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&fieldIS));
58769566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&plex));
5877083401c6SMatthew G. Knepley   }
5878083401c6SMatthew G. Knepley   /* Create label DSes
5879083401c6SMatthew G. Knepley      - WE ONLY SUPPORT IDENTICAL OR DISJOINT LABELS
5880083401c6SMatthew G. Knepley   */
5881083401c6SMatthew G. Knepley   /* TODO Should check that labels are disjoint */
5882083401c6SMatthew G. Knepley   for (l = 0; l < Nl; ++l) {
5883083401c6SMatthew G. Knepley     DMLabel   label = labelSet[l];
5884083401c6SMatthew G. Knepley     PetscDS   ds;
5885083401c6SMatthew G. Knepley     IS        fields;
5886083401c6SMatthew G. Knepley     PetscInt *fld, nf;
5887083401c6SMatthew G. Knepley 
58889566063dSJacob Faibussowitsch     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds));
58899371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
58909371c9d4SSatish Balay       if (label == dm->fields[f].label || !dm->fields[f].label) ++nf;
58919566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nf, &fld));
58929371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
58939371c9d4SSatish Balay       if (label == dm->fields[f].label || !dm->fields[f].label) fld[nf++] = f;
58949566063dSJacob Faibussowitsch     PetscCall(ISCreate(PETSC_COMM_SELF, &fields));
58959566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_"));
58969566063dSJacob Faibussowitsch     PetscCall(ISSetType(fields, ISGENERAL));
58979566063dSJacob Faibussowitsch     PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER));
58989566063dSJacob Faibussowitsch     PetscCall(DMSetRegionDS(dm, label, fields, ds));
58999566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&fields));
59009566063dSJacob Faibussowitsch     PetscCall(PetscDSSetCoordinateDimension(ds, dE));
5901083401c6SMatthew G. Knepley     {
5902083401c6SMatthew G. Knepley       DMPolytopeType ct;
5903083401c6SMatthew G. Knepley       PetscInt       lStart, lEnd;
59045fedec97SMatthew G. Knepley       PetscBool      isCohesiveLocal = PETSC_FALSE, isCohesive;
59050122748bSMatthew G. Knepley 
59069566063dSJacob Faibussowitsch       PetscCall(DMLabelGetBounds(label, &lStart, &lEnd));
5907665f567fSMatthew G. Knepley       if (lStart >= 0) {
59089566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCellType(dm, lStart, &ct));
5909412e9a14SMatthew G. Knepley         switch (ct) {
5910412e9a14SMatthew G. Knepley         case DM_POLYTOPE_POINT_PRISM_TENSOR:
5911412e9a14SMatthew G. Knepley         case DM_POLYTOPE_SEG_PRISM_TENSOR:
5912412e9a14SMatthew G. Knepley         case DM_POLYTOPE_TRI_PRISM_TENSOR:
5913d71ae5a4SJacob Faibussowitsch         case DM_POLYTOPE_QUAD_PRISM_TENSOR:
5914d71ae5a4SJacob Faibussowitsch           isCohesiveLocal = PETSC_TRUE;
5915d71ae5a4SJacob Faibussowitsch           break;
5916d71ae5a4SJacob Faibussowitsch         default:
5917d71ae5a4SJacob Faibussowitsch           break;
5918412e9a14SMatthew G. Knepley         }
5919665f567fSMatthew G. Knepley       }
59209566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Allreduce(&isCohesiveLocal, &isCohesive, 1, MPIU_BOOL, MPI_LOR, comm));
59215fedec97SMatthew G. Knepley       for (f = 0, nf = 0; f < Nf; ++f) {
59225fedec97SMatthew G. Knepley         if (label == dm->fields[f].label || !dm->fields[f].label) {
59235fedec97SMatthew G. Knepley           if (label == dm->fields[f].label) {
59249566063dSJacob Faibussowitsch             PetscCall(PetscDSSetDiscretization(ds, nf, NULL));
59259566063dSJacob Faibussowitsch             PetscCall(PetscDSSetCohesive(ds, nf, isCohesive));
59265fedec97SMatthew G. Knepley           }
59275fedec97SMatthew G. Knepley           ++nf;
59285fedec97SMatthew G. Knepley         }
59295fedec97SMatthew G. Knepley       }
5930e5e52638SMatthew G. Knepley     }
59319566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&ds));
5932e5e52638SMatthew G. Knepley   }
59339566063dSJacob Faibussowitsch   PetscCall(PetscFree(labelSet));
5934e5e52638SMatthew G. Knepley   /* Set fields in DSes */
5935083401c6SMatthew G. Knepley   for (s = 0; s < dm->Nds; ++s) {
5936083401c6SMatthew G. Knepley     PetscDS         ds     = dm->probs[s].ds;
5937083401c6SMatthew G. Knepley     IS              fields = dm->probs[s].fields;
5938083401c6SMatthew G. Knepley     const PetscInt *fld;
59395fedec97SMatthew G. Knepley     PetscInt        nf, dsnf;
59405fedec97SMatthew G. Knepley     PetscBool       isCohesive;
5941e5e52638SMatthew G. Knepley 
59429566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsnf));
59439566063dSJacob Faibussowitsch     PetscCall(PetscDSIsCohesive(ds, &isCohesive));
59449566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(fields, &nf));
59459566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(fields, &fld));
5946083401c6SMatthew G. Knepley     for (f = 0; f < nf; ++f) {
5947083401c6SMatthew G. Knepley       PetscObject  disc = dm->fields[fld[f]].disc;
59485fedec97SMatthew G. Knepley       PetscBool    isCohesiveField;
5949e5e52638SMatthew G. Knepley       PetscClassId id;
5950e5e52638SMatthew G. Knepley 
59515fedec97SMatthew G. Knepley       /* Handle DS with no fields */
59529566063dSJacob Faibussowitsch       if (dsnf) PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField));
59535fedec97SMatthew G. Knepley       /* If this is a cohesive cell, then regular fields need the lower dimensional discretization */
59549566063dSJacob Faibussowitsch       if (isCohesive && !isCohesiveField) PetscCall(PetscFEGetHeightSubspace((PetscFE)disc, 1, (PetscFE *)&disc));
59559566063dSJacob Faibussowitsch       PetscCall(PetscDSSetDiscretization(ds, f, disc));
5956083401c6SMatthew G. Knepley       /* We allow people to have placeholder fields and construct the Section by hand */
59579566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(disc, &id));
5958e5e52638SMatthew G. Knepley       if ((id != PETSCFE_CLASSID) && (id != PETSCFV_CLASSID)) doSetup = PETSC_FALSE;
5959e5e52638SMatthew G. Knepley     }
59609566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(fields, &fld));
5961e5e52638SMatthew G. Knepley   }
5962f9244615SMatthew G. Knepley   /* Allow k-jet tabulation */
59639566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)dm)->prefix, "-dm_ds_jet_degree", &k, &flg));
5964f9244615SMatthew G. Knepley   if (flg) {
59653b4aee56SMatthew G. Knepley     for (s = 0; s < dm->Nds; ++s) {
59663b4aee56SMatthew G. Knepley       PetscDS  ds = dm->probs[s].ds;
59673b4aee56SMatthew G. Knepley       PetscInt Nf, f;
59683b4aee56SMatthew G. Knepley 
59699566063dSJacob Faibussowitsch       PetscCall(PetscDSGetNumFields(ds, &Nf));
59709566063dSJacob Faibussowitsch       for (f = 0; f < Nf; ++f) PetscCall(PetscDSSetJetDegree(ds, f, k));
59713b4aee56SMatthew G. Knepley     }
5972f9244615SMatthew G. Knepley   }
5973e5e52638SMatthew G. Knepley   /* Setup DSes */
5974e5e52638SMatthew G. Knepley   if (doSetup) {
59759566063dSJacob Faibussowitsch     for (s = 0; s < dm->Nds; ++s) PetscCall(PetscDSSetUp(dm->probs[s].ds));
5976e5e52638SMatthew G. Knepley   }
5977e5e52638SMatthew G. Knepley   PetscFunctionReturn(0);
5978e5e52638SMatthew G. Knepley }
5979e5e52638SMatthew G. Knepley 
5980e5e52638SMatthew G. Knepley /*@
5981bb7acecfSBarry Smith   DMComputeExactSolution - Compute the exact solution for a given `DM`, using the `PetscDS` information.
59827f96f943SMatthew G. Knepley 
5983bb7acecfSBarry Smith   Collective on `DM`
5984f2cacb80SMatthew G. Knepley 
59857f96f943SMatthew G. Knepley   Input Parameters:
5986bb7acecfSBarry Smith + dm   - The `DM`
59877f96f943SMatthew G. Knepley - time - The time
59887f96f943SMatthew G. Knepley 
59897f96f943SMatthew G. Knepley   Output Parameters:
5990f2cacb80SMatthew G. Knepley + u    - The vector will be filled with exact solution values, or NULL
5991f2cacb80SMatthew G. Knepley - u_t  - The vector will be filled with the time derivative of exact solution values, or NULL
59927f96f943SMatthew G. Knepley 
5993bb7acecfSBarry Smith   Note:
5994bb7acecfSBarry Smith   The user must call `PetscDSSetExactSolution()` before using this routine
59957f96f943SMatthew G. Knepley 
59967f96f943SMatthew G. Knepley   Level: developer
59977f96f943SMatthew G. Knepley 
5998db781477SPatrick Sanan .seealso: `PetscDSSetExactSolution()`
59997f96f943SMatthew G. Knepley @*/
6000d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeExactSolution(DM dm, PetscReal time, Vec u, Vec u_t)
6001d71ae5a4SJacob Faibussowitsch {
60027f96f943SMatthew G. Knepley   PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx);
60037f96f943SMatthew G. Knepley   void   **ectxs;
60047f96f943SMatthew G. Knepley   PetscInt Nf, Nds, s;
60057f96f943SMatthew G. Knepley 
60067f96f943SMatthew G. Knepley   PetscFunctionBegin;
6007f2cacb80SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6008f2cacb80SMatthew G. Knepley   if (u) PetscValidHeaderSpecific(u, VEC_CLASSID, 3);
6009f2cacb80SMatthew G. Knepley   if (u_t) PetscValidHeaderSpecific(u_t, VEC_CLASSID, 4);
60109566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
60119566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(Nf, &exacts, Nf, &ectxs));
60129566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
60137f96f943SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
60147f96f943SMatthew G. Knepley     PetscDS         ds;
60157f96f943SMatthew G. Knepley     DMLabel         label;
60167f96f943SMatthew G. Knepley     IS              fieldIS;
60177f96f943SMatthew G. Knepley     const PetscInt *fields, id = 1;
60187f96f943SMatthew G. Knepley     PetscInt        dsNf, f;
60197f96f943SMatthew G. Knepley 
60209566063dSJacob Faibussowitsch     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds));
60219566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsNf));
60229566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(fieldIS, &fields));
60239566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(exacts, Nf));
60249566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ectxs, Nf));
6025f2cacb80SMatthew G. Knepley     if (u) {
60267f96f943SMatthew G. Knepley       for (f = 0; f < dsNf; ++f) {
60277f96f943SMatthew G. Knepley         const PetscInt field = fields[f];
60289566063dSJacob Faibussowitsch         PetscCall(PetscDSGetExactSolution(ds, field, &exacts[field], &ectxs[field]));
60297f96f943SMatthew G. Knepley       }
60309566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(fieldIS, &fields));
60317f96f943SMatthew G. Knepley       if (label) {
60329566063dSJacob Faibussowitsch         PetscCall(DMProjectFunctionLabel(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, u));
60337f96f943SMatthew G. Knepley       } else {
60349566063dSJacob Faibussowitsch         PetscCall(DMProjectFunction(dm, time, exacts, ectxs, INSERT_ALL_VALUES, u));
60357f96f943SMatthew G. Knepley       }
60367f96f943SMatthew G. Knepley     }
6037f2cacb80SMatthew G. Knepley     if (u_t) {
60389566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(exacts, Nf));
60399566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(ectxs, Nf));
6040f2cacb80SMatthew G. Knepley       for (f = 0; f < dsNf; ++f) {
6041f2cacb80SMatthew G. Knepley         const PetscInt field = fields[f];
60429566063dSJacob Faibussowitsch         PetscCall(PetscDSGetExactSolutionTimeDerivative(ds, field, &exacts[field], &ectxs[field]));
6043f2cacb80SMatthew G. Knepley       }
60449566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(fieldIS, &fields));
6045f2cacb80SMatthew G. Knepley       if (label) {
60469566063dSJacob Faibussowitsch         PetscCall(DMProjectFunctionLabel(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, u_t));
6047f2cacb80SMatthew G. Knepley       } else {
60489566063dSJacob Faibussowitsch         PetscCall(DMProjectFunction(dm, time, exacts, ectxs, INSERT_ALL_VALUES, u_t));
6049f2cacb80SMatthew G. Knepley       }
6050f2cacb80SMatthew G. Knepley     }
6051f2cacb80SMatthew G. Knepley   }
6052f2cacb80SMatthew G. Knepley   if (u) {
60539566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution"));
60549566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u, "exact_"));
6055f2cacb80SMatthew G. Knepley   }
6056f2cacb80SMatthew G. Knepley   if (u_t) {
60579566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution Time Derivative"));
60589566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u_t, "exact_t_"));
6059f2cacb80SMatthew G. Knepley   }
60609566063dSJacob Faibussowitsch   PetscCall(PetscFree2(exacts, ectxs));
60617f96f943SMatthew G. Knepley   PetscFunctionReturn(0);
60627f96f943SMatthew G. Knepley }
60637f96f943SMatthew G. Knepley 
6064d71ae5a4SJacob Faibussowitsch PetscErrorCode DMTransferDS_Internal(DM dm, DMLabel label, IS fields, PetscDS ds)
6065d71ae5a4SJacob Faibussowitsch {
606645480ffeSMatthew G. Knepley   PetscDS    dsNew;
606745480ffeSMatthew G. Knepley   DSBoundary b;
60686a02485aSMatthew G. Knepley   PetscInt   cdim, Nf, f, d;
60695fedec97SMatthew G. Knepley   PetscBool  isCohesive;
607045480ffeSMatthew G. Knepley   void      *ctx;
607145480ffeSMatthew G. Knepley 
607245480ffeSMatthew G. Knepley   PetscFunctionBegin;
60739566063dSJacob Faibussowitsch   PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)ds), &dsNew));
60749566063dSJacob Faibussowitsch   PetscCall(PetscDSCopyConstants(ds, dsNew));
60759566063dSJacob Faibussowitsch   PetscCall(PetscDSCopyExactSolutions(ds, dsNew));
60769566063dSJacob Faibussowitsch   PetscCall(PetscDSSelectDiscretizations(ds, PETSC_DETERMINE, NULL, dsNew));
60779566063dSJacob Faibussowitsch   PetscCall(PetscDSCopyEquations(ds, dsNew));
60789566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(ds, &Nf));
607945480ffeSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
60809566063dSJacob Faibussowitsch     PetscCall(PetscDSGetContext(ds, f, &ctx));
60819566063dSJacob Faibussowitsch     PetscCall(PetscDSSetContext(dsNew, f, ctx));
60829566063dSJacob Faibussowitsch     PetscCall(PetscDSGetCohesive(ds, f, &isCohesive));
60839566063dSJacob Faibussowitsch     PetscCall(PetscDSSetCohesive(dsNew, f, isCohesive));
60846a02485aSMatthew G. Knepley     PetscCall(PetscDSGetJetDegree(ds, f, &d));
60856a02485aSMatthew G. Knepley     PetscCall(PetscDSSetJetDegree(dsNew, f, d));
608645480ffeSMatthew G. Knepley   }
608745480ffeSMatthew G. Knepley   if (Nf) {
60889566063dSJacob Faibussowitsch     PetscCall(PetscDSGetCoordinateDimension(ds, &cdim));
60899566063dSJacob Faibussowitsch     PetscCall(PetscDSSetCoordinateDimension(dsNew, cdim));
609045480ffeSMatthew G. Knepley   }
60919566063dSJacob Faibussowitsch   PetscCall(PetscDSCopyBoundary(ds, PETSC_DETERMINE, NULL, dsNew));
609245480ffeSMatthew G. Knepley   for (b = dsNew->boundary; b; b = b->next) {
60939566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, b->lname, &b->label));
609445480ffeSMatthew G. Knepley     /* Do not check if label exists here, since p4est calls this for the reference tree which does not have the labels */
60957a8be351SBarry Smith     //PetscCheck(b->label,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Label %s missing in new DM", name);
609645480ffeSMatthew G. Knepley   }
609745480ffeSMatthew G. Knepley 
60989566063dSJacob Faibussowitsch   PetscCall(DMSetRegionDS(dm, label, fields, dsNew));
60999566063dSJacob Faibussowitsch   PetscCall(PetscDSDestroy(&dsNew));
610045480ffeSMatthew G. Knepley   PetscFunctionReturn(0);
610145480ffeSMatthew G. Knepley }
610245480ffeSMatthew G. Knepley 
61037f96f943SMatthew G. Knepley /*@
6104bb7acecfSBarry Smith   DMCopyDS - Copy the discrete systems for the `DM` into another `DM`
6105e5e52638SMatthew G. Knepley 
6106d083f849SBarry Smith   Collective on dm
6107e5e52638SMatthew G. Knepley 
6108e5e52638SMatthew G. Knepley   Input Parameter:
6109bb7acecfSBarry Smith . dm - The `DM`
6110e5e52638SMatthew G. Knepley 
6111e5e52638SMatthew G. Knepley   Output Parameter:
6112bb7acecfSBarry Smith . newdm - The `DM`
6113e5e52638SMatthew G. Knepley 
6114e5e52638SMatthew G. Knepley   Level: advanced
6115e5e52638SMatthew G. Knepley 
6116db781477SPatrick Sanan .seealso: `DMCopyFields()`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`
6117e5e52638SMatthew G. Knepley @*/
6118d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDS(DM dm, DM newdm)
6119d71ae5a4SJacob Faibussowitsch {
6120e5e52638SMatthew G. Knepley   PetscInt Nds, s;
6121e5e52638SMatthew G. Knepley 
6122e5e52638SMatthew G. Knepley   PetscFunctionBegin;
6123e5e52638SMatthew G. Knepley   if (dm == newdm) PetscFunctionReturn(0);
61249566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
61259566063dSJacob Faibussowitsch   PetscCall(DMClearDS(newdm));
6126e5e52638SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
6127e5e52638SMatthew G. Knepley     DMLabel  label;
6128b3cf3223SMatthew G. Knepley     IS       fields;
612945480ffeSMatthew G. Knepley     PetscDS  ds, newds;
6130783e2ec8SMatthew G. Knepley     PetscInt Nbd, bd;
6131e5e52638SMatthew G. Knepley 
61329566063dSJacob Faibussowitsch     PetscCall(DMGetRegionNumDS(dm, s, &label, &fields, &ds));
6133b8025e53SMatthew G. Knepley     /* TODO: We need to change all keys from labels in the old DM to labels in the new DM */
61349566063dSJacob Faibussowitsch     PetscCall(DMTransferDS_Internal(newdm, label, fields, ds));
6135d5b43468SJose E. Roman     /* Complete new labels in the new DS */
61369566063dSJacob Faibussowitsch     PetscCall(DMGetRegionDS(newdm, label, NULL, &newds));
61379566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumBoundary(newds, &Nbd));
6138783e2ec8SMatthew G. Knepley     for (bd = 0; bd < Nbd; ++bd) {
6139b8025e53SMatthew G. Knepley       PetscWeakForm wf;
614045480ffeSMatthew G. Knepley       DMLabel       label;
6141783e2ec8SMatthew G. Knepley       PetscInt      field;
6142783e2ec8SMatthew G. Knepley 
61439566063dSJacob Faibussowitsch       PetscCall(PetscDSGetBoundary(newds, bd, &wf, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL));
61449566063dSJacob Faibussowitsch       PetscCall(PetscWeakFormReplaceLabel(wf, label));
6145783e2ec8SMatthew G. Knepley     }
6146e5e52638SMatthew G. Knepley   }
6147799db056SMatthew G. Knepley   PetscCall(DMCompleteBCLabels_Internal(newdm));
6148e5e52638SMatthew G. Knepley   PetscFunctionReturn(0);
6149e5e52638SMatthew G. Knepley }
6150e5e52638SMatthew G. Knepley 
6151e5e52638SMatthew G. Knepley /*@
6152bb7acecfSBarry Smith   DMCopyDisc - Copy the fields and discrete systems for the `DM` into another `DM`
6153e5e52638SMatthew G. Knepley 
6154d083f849SBarry Smith   Collective on dm
6155e5e52638SMatthew G. Knepley 
6156e5e52638SMatthew G. Knepley   Input Parameter:
6157bb7acecfSBarry Smith . dm - The `DM`
6158e5e52638SMatthew G. Knepley 
6159e5e52638SMatthew G. Knepley   Output Parameter:
6160bb7acecfSBarry Smith . newdm - The `DM`
6161e5e52638SMatthew G. Knepley 
6162e5e52638SMatthew G. Knepley   Level: advanced
6163e5e52638SMatthew G. Knepley 
6164bb7acecfSBarry Smith   Developer Note:
6165bb7acecfSBarry Smith   Really ugly name, nothing in PETSc is called a `Disc` plus it is an ugly abbreviation
6166bb7acecfSBarry Smith 
6167db781477SPatrick Sanan .seealso: `DMCopyFields()`, `DMCopyDS()`
6168e5e52638SMatthew G. Knepley @*/
6169d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDisc(DM dm, DM newdm)
6170d71ae5a4SJacob Faibussowitsch {
6171e5e52638SMatthew G. Knepley   PetscFunctionBegin;
61729566063dSJacob Faibussowitsch   PetscCall(DMCopyFields(dm, newdm));
61739566063dSJacob Faibussowitsch   PetscCall(DMCopyDS(dm, newdm));
6174e5e52638SMatthew G. Knepley   PetscFunctionReturn(0);
6175e5e52638SMatthew G. Knepley }
6176e5e52638SMatthew G. Knepley 
6177c73cfb54SMatthew G. Knepley /*@
6178bb7acecfSBarry Smith   DMGetDimension - Return the topological dimension of the `DM`
6179c73cfb54SMatthew G. Knepley 
6180c73cfb54SMatthew G. Knepley   Not collective
6181c73cfb54SMatthew G. Knepley 
6182c73cfb54SMatthew G. Knepley   Input Parameter:
6183bb7acecfSBarry Smith . dm - The `DM`
6184c73cfb54SMatthew G. Knepley 
6185c73cfb54SMatthew G. Knepley   Output Parameter:
6186c73cfb54SMatthew G. Knepley . dim - The topological dimension
6187c73cfb54SMatthew G. Knepley 
6188c73cfb54SMatthew G. Knepley   Level: beginner
6189c73cfb54SMatthew G. Knepley 
6190db781477SPatrick Sanan .seealso: `DMSetDimension()`, `DMCreate()`
6191c73cfb54SMatthew G. Knepley @*/
6192d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimension(DM dm, PetscInt *dim)
6193d71ae5a4SJacob Faibussowitsch {
6194c73cfb54SMatthew G. Knepley   PetscFunctionBegin;
6195c73cfb54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6196534a8f05SLisandro Dalcin   PetscValidIntPointer(dim, 2);
6197c73cfb54SMatthew G. Knepley   *dim = dm->dim;
6198c73cfb54SMatthew G. Knepley   PetscFunctionReturn(0);
6199c73cfb54SMatthew G. Knepley }
6200c73cfb54SMatthew G. Knepley 
6201c73cfb54SMatthew G. Knepley /*@
6202bb7acecfSBarry Smith   DMSetDimension - Set the topological dimension of the `DM`
6203c73cfb54SMatthew G. Knepley 
6204c73cfb54SMatthew G. Knepley   Collective on dm
6205c73cfb54SMatthew G. Knepley 
6206c73cfb54SMatthew G. Knepley   Input Parameters:
6207bb7acecfSBarry Smith + dm - The `DM`
6208c73cfb54SMatthew G. Knepley - dim - The topological dimension
6209c73cfb54SMatthew G. Knepley 
6210c73cfb54SMatthew G. Knepley   Level: beginner
6211c73cfb54SMatthew G. Knepley 
6212db781477SPatrick Sanan .seealso: `DMGetDimension()`, `DMCreate()`
6213c73cfb54SMatthew G. Knepley @*/
6214d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDimension(DM dm, PetscInt dim)
6215d71ae5a4SJacob Faibussowitsch {
6216e5e52638SMatthew G. Knepley   PetscDS  ds;
621745480ffeSMatthew G. Knepley   PetscInt Nds, n;
6218f17e8794SMatthew G. Knepley 
6219c73cfb54SMatthew G. Knepley   PetscFunctionBegin;
6220c73cfb54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6221c73cfb54SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, dim, 2);
6222c73cfb54SMatthew G. Knepley   dm->dim = dim;
6223d17bd122SMatthew G. Knepley   if (dm->dim >= 0) {
62249566063dSJacob Faibussowitsch     PetscCall(DMGetNumDS(dm, &Nds));
622545480ffeSMatthew G. Knepley     for (n = 0; n < Nds; ++n) {
62269566063dSJacob Faibussowitsch       PetscCall(DMGetRegionNumDS(dm, n, NULL, NULL, &ds));
62279566063dSJacob Faibussowitsch       if (ds->dimEmbed < 0) PetscCall(PetscDSSetCoordinateDimension(ds, dim));
622845480ffeSMatthew G. Knepley     }
6229d17bd122SMatthew G. Knepley   }
6230c73cfb54SMatthew G. Knepley   PetscFunctionReturn(0);
6231c73cfb54SMatthew G. Knepley }
6232c73cfb54SMatthew G. Knepley 
6233793f3fe5SMatthew G. Knepley /*@
6234793f3fe5SMatthew G. Knepley   DMGetDimPoints - Get the half-open interval for all points of a given dimension
6235793f3fe5SMatthew G. Knepley 
6236d083f849SBarry Smith   Collective on dm
6237793f3fe5SMatthew G. Knepley 
6238793f3fe5SMatthew G. Knepley   Input Parameters:
6239bb7acecfSBarry Smith + dm - the `DM`
6240793f3fe5SMatthew G. Knepley - dim - the dimension
6241793f3fe5SMatthew G. Knepley 
6242793f3fe5SMatthew G. Knepley   Output Parameters:
6243793f3fe5SMatthew G. Knepley + pStart - The first point of the given dimension
6244aa049354SPatrick Sanan - pEnd - The first point following points of the given dimension
6245793f3fe5SMatthew G. Knepley 
6246793f3fe5SMatthew G. Knepley   Note:
6247793f3fe5SMatthew G. Knepley   The points are vertices in the Hasse diagram encoding the topology. This is explained in
6248a8d69d7bSBarry Smith   https://arxiv.org/abs/0908.4427. If no points exist of this dimension in the storage scheme,
6249793f3fe5SMatthew G. Knepley   then the interval is empty.
6250793f3fe5SMatthew G. Knepley 
6251793f3fe5SMatthew G. Knepley   Level: intermediate
6252793f3fe5SMatthew G. Knepley 
6253db781477SPatrick Sanan .seealso: `DMPLEX`, `DMPlexGetDepthStratum()`, `DMPlexGetHeightStratum()`
6254793f3fe5SMatthew G. Knepley @*/
6255d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimPoints(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd)
6256d71ae5a4SJacob Faibussowitsch {
6257793f3fe5SMatthew G. Knepley   PetscInt d;
6258793f3fe5SMatthew G. Knepley 
6259793f3fe5SMatthew G. Knepley   PetscFunctionBegin;
6260793f3fe5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
62619566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &d));
62627a8be351SBarry Smith   PetscCheck((dim >= 0) && (dim <= d), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %" PetscInt_FMT, dim);
6263dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, getdimpoints, dim, pStart, pEnd);
6264793f3fe5SMatthew G. Knepley   PetscFunctionReturn(0);
6265793f3fe5SMatthew G. Knepley }
6266793f3fe5SMatthew G. Knepley 
62676636e97aSMatthew G Knepley /*@
6268bb7acecfSBarry Smith   DMGetOutputDM - Retrieve the `DM` associated with the layout for output
6269f4d763aaSMatthew G. Knepley 
62708f700142SStefano Zampini   Collective on dm
62718f700142SStefano Zampini 
6272f4d763aaSMatthew G. Knepley   Input Parameter:
6273bb7acecfSBarry Smith . dm - The original `DM`
6274f4d763aaSMatthew G. Knepley 
6275f4d763aaSMatthew G. Knepley   Output Parameter:
6276bb7acecfSBarry Smith . odm - The `DM` which provides the layout for output
6277f4d763aaSMatthew G. Knepley 
6278f4d763aaSMatthew G. Knepley   Level: intermediate
6279f4d763aaSMatthew G. Knepley 
6280bb7acecfSBarry Smith   Note:
6281bb7acecfSBarry Smith   In some situations the vector obtained with `DMCreateGlobalVector()` excludes points for degrees of freedom that are associated with fixed (Dirichelet) boundary
6282bb7acecfSBarry Smith   conditions since the algebraic solver does not solve for those variables. The output `DM` includes these excluded points and its global vector contains the
6283bb7acecfSBarry Smith   locations for those dof so that they can be output to a file or other viewer along with the unconstrained dof.
6284bb7acecfSBarry Smith 
6285bb7acecfSBarry Smith .seealso: `VecView()`, `DMGetGlobalSection()`, `DMCreateGlobalVector()`, `PetscSectionHasConstraints()`, `DMSetGlobalSection()`
6286f4d763aaSMatthew G. Knepley @*/
6287d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputDM(DM dm, DM *odm)
6288d71ae5a4SJacob Faibussowitsch {
6289c26acbdeSMatthew G. Knepley   PetscSection section;
62902d4e4a49SMatthew G. Knepley   PetscBool    hasConstraints, ghasConstraints;
629114f150ffSMatthew G. Knepley 
629214f150ffSMatthew G. Knepley   PetscFunctionBegin;
629314f150ffSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
629414f150ffSMatthew G. Knepley   PetscValidPointer(odm, 2);
62959566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
62969566063dSJacob Faibussowitsch   PetscCall(PetscSectionHasConstraints(section, &hasConstraints));
62979566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allreduce(&hasConstraints, &ghasConstraints, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm)));
62982d4e4a49SMatthew G. Knepley   if (!ghasConstraints) {
6299c26acbdeSMatthew G. Knepley     *odm = dm;
6300c26acbdeSMatthew G. Knepley     PetscFunctionReturn(0);
6301c26acbdeSMatthew G. Knepley   }
630214f150ffSMatthew G. Knepley   if (!dm->dmBC) {
6303c26acbdeSMatthew G. Knepley     PetscSection newSection, gsection;
630414f150ffSMatthew G. Knepley     PetscSF      sf;
630514f150ffSMatthew G. Knepley 
63069566063dSJacob Faibussowitsch     PetscCall(DMClone(dm, &dm->dmBC));
63079566063dSJacob Faibussowitsch     PetscCall(DMCopyDisc(dm, dm->dmBC));
63089566063dSJacob Faibussowitsch     PetscCall(PetscSectionClone(section, &newSection));
63099566063dSJacob Faibussowitsch     PetscCall(DMSetLocalSection(dm->dmBC, newSection));
63109566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&newSection));
63119566063dSJacob Faibussowitsch     PetscCall(DMGetPointSF(dm->dmBC, &sf));
63129566063dSJacob Faibussowitsch     PetscCall(PetscSectionCreateGlobalSection(section, sf, PETSC_TRUE, PETSC_FALSE, &gsection));
63139566063dSJacob Faibussowitsch     PetscCall(DMSetGlobalSection(dm->dmBC, gsection));
63149566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&gsection));
631514f150ffSMatthew G. Knepley   }
631614f150ffSMatthew G. Knepley   *odm = dm->dmBC;
631714f150ffSMatthew G. Knepley   PetscFunctionReturn(0);
631814f150ffSMatthew G. Knepley }
6319f4d763aaSMatthew G. Knepley 
6320f4d763aaSMatthew G. Knepley /*@
6321cdb7a50dSMatthew G. Knepley   DMGetOutputSequenceNumber - Retrieve the sequence number/value for output
6322f4d763aaSMatthew G. Knepley 
6323f4d763aaSMatthew G. Knepley   Input Parameter:
6324bb7acecfSBarry Smith . dm - The original `DM`
6325f4d763aaSMatthew G. Knepley 
6326cdb7a50dSMatthew G. Knepley   Output Parameters:
6327cdb7a50dSMatthew G. Knepley + num - The output sequence number
6328cdb7a50dSMatthew G. Knepley - val - The output sequence value
6329f4d763aaSMatthew G. Knepley 
6330f4d763aaSMatthew G. Knepley   Level: intermediate
6331f4d763aaSMatthew G. Knepley 
6332bb7acecfSBarry Smith   Note:
6333bb7acecfSBarry Smith   This is intended for output that should appear in sequence, for instance
6334bb7acecfSBarry Smith   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6335bb7acecfSBarry Smith 
6336bb7acecfSBarry Smith   Developer Note:
6337bb7acecfSBarry Smith   The `DM` serves as a convenient place to store the current iteration value. The iteration is not
6338bb7acecfSBarry Smith   not directly related to the `DM`.
6339f4d763aaSMatthew G. Knepley 
6340db781477SPatrick Sanan .seealso: `VecView()`
6341f4d763aaSMatthew G. Knepley @*/
6342d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputSequenceNumber(DM dm, PetscInt *num, PetscReal *val)
6343d71ae5a4SJacob Faibussowitsch {
6344f4d763aaSMatthew G. Knepley   PetscFunctionBegin;
6345f4d763aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
63469371c9d4SSatish Balay   if (num) {
63479371c9d4SSatish Balay     PetscValidIntPointer(num, 2);
63489371c9d4SSatish Balay     *num = dm->outputSequenceNum;
63499371c9d4SSatish Balay   }
63509371c9d4SSatish Balay   if (val) {
63519371c9d4SSatish Balay     PetscValidRealPointer(val, 3);
63529371c9d4SSatish Balay     *val = dm->outputSequenceVal;
63539371c9d4SSatish Balay   }
6354f4d763aaSMatthew G. Knepley   PetscFunctionReturn(0);
6355f4d763aaSMatthew G. Knepley }
6356f4d763aaSMatthew G. Knepley 
6357f4d763aaSMatthew G. Knepley /*@
6358cdb7a50dSMatthew G. Knepley   DMSetOutputSequenceNumber - Set the sequence number/value for output
6359f4d763aaSMatthew G. Knepley 
6360f4d763aaSMatthew G. Knepley   Input Parameters:
6361bb7acecfSBarry Smith + dm - The original `DM`
6362cdb7a50dSMatthew G. Knepley . num - The output sequence number
6363cdb7a50dSMatthew G. Knepley - val - The output sequence value
6364f4d763aaSMatthew G. Knepley 
6365f4d763aaSMatthew G. Knepley   Level: intermediate
6366f4d763aaSMatthew G. Knepley 
6367bb7acecfSBarry Smith   Note:
6368bb7acecfSBarry Smith   This is intended for output that should appear in sequence, for instance
6369bb7acecfSBarry Smith   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6370f4d763aaSMatthew G. Knepley 
6371db781477SPatrick Sanan .seealso: `VecView()`
6372f4d763aaSMatthew G. Knepley @*/
6373d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOutputSequenceNumber(DM dm, PetscInt num, PetscReal val)
6374d71ae5a4SJacob Faibussowitsch {
6375f4d763aaSMatthew G. Knepley   PetscFunctionBegin;
6376f4d763aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6377f4d763aaSMatthew G. Knepley   dm->outputSequenceNum = num;
6378cdb7a50dSMatthew G. Knepley   dm->outputSequenceVal = val;
6379cdb7a50dSMatthew G. Knepley   PetscFunctionReturn(0);
6380cdb7a50dSMatthew G. Knepley }
6381cdb7a50dSMatthew G. Knepley 
6382cdb7a50dSMatthew G. Knepley /*@C
6383bb7acecfSBarry Smith  DMOutputSequenceLoad - Retrieve the sequence value from a `PetscViewer`
6384cdb7a50dSMatthew G. Knepley 
6385cdb7a50dSMatthew G. Knepley   Input Parameters:
6386bb7acecfSBarry Smith + dm   - The original `DM`
6387cdb7a50dSMatthew G. Knepley . name - The sequence name
6388cdb7a50dSMatthew G. Knepley - num  - The output sequence number
6389cdb7a50dSMatthew G. Knepley 
6390cdb7a50dSMatthew G. Knepley   Output Parameter:
6391cdb7a50dSMatthew G. Knepley . val  - The output sequence value
6392cdb7a50dSMatthew G. Knepley 
6393cdb7a50dSMatthew G. Knepley   Level: intermediate
6394cdb7a50dSMatthew G. Knepley 
6395bb7acecfSBarry Smith   Note:
6396bb7acecfSBarry Smith   This is intended for output that should appear in sequence, for instance
6397bb7acecfSBarry Smith   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6398bb7acecfSBarry Smith 
6399bb7acecfSBarry Smith   Developer Note:
6400bb7acecfSBarry Smith   It is unclear at the user API level why a `DM` is needed as input
6401cdb7a50dSMatthew G. Knepley 
6402db781477SPatrick Sanan .seealso: `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()`
6403cdb7a50dSMatthew G. Knepley @*/
6404d71ae5a4SJacob Faibussowitsch PetscErrorCode DMOutputSequenceLoad(DM dm, PetscViewer viewer, const char *name, PetscInt num, PetscReal *val)
6405d71ae5a4SJacob Faibussowitsch {
6406cdb7a50dSMatthew G. Knepley   PetscBool ishdf5;
6407cdb7a50dSMatthew G. Knepley 
6408cdb7a50dSMatthew G. Knepley   PetscFunctionBegin;
6409cdb7a50dSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6410cdb7a50dSMatthew G. Knepley   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
6411064a246eSJacob Faibussowitsch   PetscValidRealPointer(val, 5);
64129566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
6413cdb7a50dSMatthew G. Knepley   if (ishdf5) {
6414cdb7a50dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5)
6415cdb7a50dSMatthew G. Knepley     PetscScalar value;
6416cdb7a50dSMatthew G. Knepley 
64179566063dSJacob Faibussowitsch     PetscCall(DMSequenceLoad_HDF5_Internal(dm, name, num, &value, viewer));
64184aeb217fSMatthew G. Knepley     *val = PetscRealPart(value);
6419cdb7a50dSMatthew G. Knepley #endif
6420cdb7a50dSMatthew G. Knepley   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()");
6421f4d763aaSMatthew G. Knepley   PetscFunctionReturn(0);
6422f4d763aaSMatthew G. Knepley }
64238e4ac7eaSMatthew G. Knepley 
64248e4ac7eaSMatthew G. Knepley /*@
6425bb7acecfSBarry Smith   DMGetUseNatural - Get the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel
64268e4ac7eaSMatthew G. Knepley 
64278e4ac7eaSMatthew G. Knepley   Not collective
64288e4ac7eaSMatthew G. Knepley 
64298e4ac7eaSMatthew G. Knepley   Input Parameter:
6430bb7acecfSBarry Smith . dm - The `DM`
64318e4ac7eaSMatthew G. Knepley 
64328e4ac7eaSMatthew G. Knepley   Output Parameter:
6433bb7acecfSBarry Smith . useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution
64348e4ac7eaSMatthew G. Knepley 
64358e4ac7eaSMatthew G. Knepley   Level: beginner
64368e4ac7eaSMatthew G. Knepley 
6437db781477SPatrick Sanan .seealso: `DMSetUseNatural()`, `DMCreate()`
64388e4ac7eaSMatthew G. Knepley @*/
6439d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetUseNatural(DM dm, PetscBool *useNatural)
6440d71ae5a4SJacob Faibussowitsch {
64418e4ac7eaSMatthew G. Knepley   PetscFunctionBegin;
64428e4ac7eaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6443534a8f05SLisandro Dalcin   PetscValidBoolPointer(useNatural, 2);
64448e4ac7eaSMatthew G. Knepley   *useNatural = dm->useNatural;
64458e4ac7eaSMatthew G. Knepley   PetscFunctionReturn(0);
64468e4ac7eaSMatthew G. Knepley }
64478e4ac7eaSMatthew G. Knepley 
64488e4ac7eaSMatthew G. Knepley /*@
6449bb7acecfSBarry Smith   DMSetUseNatural - Set the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel
64508e4ac7eaSMatthew G. Knepley 
64518e4ac7eaSMatthew G. Knepley   Collective on dm
64528e4ac7eaSMatthew G. Knepley 
64538e4ac7eaSMatthew G. Knepley   Input Parameters:
6454bb7acecfSBarry Smith  + dm - The `DM`
6455bb7acecfSBarry Smith - useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution
64568e4ac7eaSMatthew G. Knepley 
6457bb7acecfSBarry Smith   Note:
6458bb7acecfSBarry Smith   This also causes the map to be build after `DMCreateSubDM()` and `DMCreateSuperDM()`
64595d3b26e6SMatthew G. Knepley 
64608e4ac7eaSMatthew G. Knepley   Level: beginner
64618e4ac7eaSMatthew G. Knepley 
6462db781477SPatrick Sanan .seealso: `DMGetUseNatural()`, `DMCreate()`, `DMPlexDistribute()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
64638e4ac7eaSMatthew G. Knepley @*/
6464d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUseNatural(DM dm, PetscBool useNatural)
6465d71ae5a4SJacob Faibussowitsch {
64668e4ac7eaSMatthew G. Knepley   PetscFunctionBegin;
64678e4ac7eaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
64688833efb5SBlaise Bourdin   PetscValidLogicalCollectiveBool(dm, useNatural, 2);
64698e4ac7eaSMatthew G. Knepley   dm->useNatural = useNatural;
64708e4ac7eaSMatthew G. Knepley   PetscFunctionReturn(0);
64718e4ac7eaSMatthew G. Knepley }
6472c58f1c22SToby Isaac 
6473c58f1c22SToby Isaac /*@C
6474bb7acecfSBarry Smith   DMCreateLabel - Create a label of the given name if it does not already exist in the `DM`
6475c58f1c22SToby Isaac 
6476c58f1c22SToby Isaac   Not Collective
6477c58f1c22SToby Isaac 
6478c58f1c22SToby Isaac   Input Parameters:
6479bb7acecfSBarry Smith + dm   - The `DM` object
6480c58f1c22SToby Isaac - name - The label name
6481c58f1c22SToby Isaac 
6482c58f1c22SToby Isaac   Level: intermediate
6483c58f1c22SToby Isaac 
6484db781477SPatrick Sanan .seealso: `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6485c58f1c22SToby Isaac @*/
6486d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabel(DM dm, const char name[])
6487d71ae5a4SJacob Faibussowitsch {
64885d80c0bfSVaclav Hapla   PetscBool flg;
64895d80c0bfSVaclav Hapla   DMLabel   label;
6490c58f1c22SToby Isaac 
6491c58f1c22SToby Isaac   PetscFunctionBegin;
6492c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6493c58f1c22SToby Isaac   PetscValidCharPointer(name, 2);
64949566063dSJacob Faibussowitsch   PetscCall(DMHasLabel(dm, name, &flg));
6495c58f1c22SToby Isaac   if (!flg) {
64969566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label));
64979566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dm, label));
64989566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&label));
6499c58f1c22SToby Isaac   }
6500c58f1c22SToby Isaac   PetscFunctionReturn(0);
6501c58f1c22SToby Isaac }
6502c58f1c22SToby Isaac 
6503c58f1c22SToby Isaac /*@C
6504bb7acecfSBarry Smith   DMCreateLabelAtIndex - Create a label of the given name at the given index. If it already exists in the `DM`, move it to this index.
65050fdc7489SMatthew Knepley 
65060fdc7489SMatthew Knepley   Not Collective
65070fdc7489SMatthew Knepley 
65080fdc7489SMatthew Knepley   Input Parameters:
6509bb7acecfSBarry Smith + dm   - The `DM` object
65100fdc7489SMatthew Knepley . l    - The index for the label
65110fdc7489SMatthew Knepley - name - The label name
65120fdc7489SMatthew Knepley 
65130fdc7489SMatthew Knepley   Level: intermediate
65140fdc7489SMatthew Knepley 
6515db781477SPatrick Sanan .seealso: `DMCreateLabel()`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
65160fdc7489SMatthew Knepley @*/
6517d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabelAtIndex(DM dm, PetscInt l, const char name[])
6518d71ae5a4SJacob Faibussowitsch {
65190fdc7489SMatthew Knepley   DMLabelLink orig, prev = NULL;
65200fdc7489SMatthew Knepley   DMLabel     label;
65210fdc7489SMatthew Knepley   PetscInt    Nl, m;
65220fdc7489SMatthew Knepley   PetscBool   flg, match;
65230fdc7489SMatthew Knepley   const char *lname;
65240fdc7489SMatthew Knepley 
65250fdc7489SMatthew Knepley   PetscFunctionBegin;
65260fdc7489SMatthew Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6527064a246eSJacob Faibussowitsch   PetscValidCharPointer(name, 3);
65289566063dSJacob Faibussowitsch   PetscCall(DMHasLabel(dm, name, &flg));
65290fdc7489SMatthew Knepley   if (!flg) {
65309566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label));
65319566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dm, label));
65329566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&label));
65330fdc7489SMatthew Knepley   }
65349566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(dm, &Nl));
653563a3b9bcSJacob Faibussowitsch   PetscCheck(l < Nl, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label index %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", l, Nl);
65360fdc7489SMatthew Knepley   for (m = 0, orig = dm->labels; m < Nl; ++m, prev = orig, orig = orig->next) {
65379566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)orig->label, &lname));
65389566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &match));
65390fdc7489SMatthew Knepley     if (match) break;
65400fdc7489SMatthew Knepley   }
65410fdc7489SMatthew Knepley   if (m == l) PetscFunctionReturn(0);
65420fdc7489SMatthew Knepley   if (!m) dm->labels = orig->next;
65430fdc7489SMatthew Knepley   else prev->next = orig->next;
65440fdc7489SMatthew Knepley   if (!l) {
65450fdc7489SMatthew Knepley     orig->next = dm->labels;
65460fdc7489SMatthew Knepley     dm->labels = orig;
65470fdc7489SMatthew Knepley   } else {
65489371c9d4SSatish Balay     for (m = 0, prev = dm->labels; m < l - 1; ++m, prev = prev->next)
65499371c9d4SSatish Balay       ;
65500fdc7489SMatthew Knepley     orig->next = prev->next;
65510fdc7489SMatthew Knepley     prev->next = orig;
65520fdc7489SMatthew Knepley   }
65530fdc7489SMatthew Knepley   PetscFunctionReturn(0);
65540fdc7489SMatthew Knepley }
65550fdc7489SMatthew Knepley 
65560fdc7489SMatthew Knepley /*@C
6557bb7acecfSBarry Smith   DMGetLabelValue - Get the value in a `DMLabel` for the given point, with -1 as the default
6558c58f1c22SToby Isaac 
6559c58f1c22SToby Isaac   Not Collective
6560c58f1c22SToby Isaac 
6561c58f1c22SToby Isaac   Input Parameters:
6562bb7acecfSBarry Smith + dm   - The `DM` object
6563c58f1c22SToby Isaac . name - The label name
6564c58f1c22SToby Isaac - point - The mesh point
6565c58f1c22SToby Isaac 
6566c58f1c22SToby Isaac   Output Parameter:
6567c58f1c22SToby Isaac . value - The label value for this point, or -1 if the point is not in the label
6568c58f1c22SToby Isaac 
6569c58f1c22SToby Isaac   Level: beginner
6570c58f1c22SToby Isaac 
6571db781477SPatrick Sanan .seealso: `DMLabelGetValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6572c58f1c22SToby Isaac @*/
6573d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelValue(DM dm, const char name[], PetscInt point, PetscInt *value)
6574d71ae5a4SJacob Faibussowitsch {
6575c58f1c22SToby Isaac   DMLabel label;
6576c58f1c22SToby Isaac 
6577c58f1c22SToby Isaac   PetscFunctionBegin;
6578c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6579c58f1c22SToby Isaac   PetscValidCharPointer(name, 2);
65809566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
65817a8be351SBarry Smith   PetscCheck(label, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No label named %s was found", name);
65829566063dSJacob Faibussowitsch   PetscCall(DMLabelGetValue(label, point, value));
6583c58f1c22SToby Isaac   PetscFunctionReturn(0);
6584c58f1c22SToby Isaac }
6585c58f1c22SToby Isaac 
6586c58f1c22SToby Isaac /*@C
6587bb7acecfSBarry Smith   DMSetLabelValue - Add a point to a `DMLabel` with given value
6588c58f1c22SToby Isaac 
6589c58f1c22SToby Isaac   Not Collective
6590c58f1c22SToby Isaac 
6591c58f1c22SToby Isaac   Input Parameters:
6592bb7acecfSBarry Smith + dm   - The `DM` object
6593c58f1c22SToby Isaac . name - The label name
6594c58f1c22SToby Isaac . point - The mesh point
6595c58f1c22SToby Isaac - value - The label value for this point
6596c58f1c22SToby Isaac 
6597c58f1c22SToby Isaac   Output Parameter:
6598c58f1c22SToby Isaac 
6599c58f1c22SToby Isaac   Level: beginner
6600c58f1c22SToby Isaac 
6601db781477SPatrick Sanan .seealso: `DMLabelSetValue()`, `DMGetStratumIS()`, `DMClearLabelValue()`
6602c58f1c22SToby Isaac @*/
6603d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue(DM dm, const char name[], PetscInt point, PetscInt value)
6604d71ae5a4SJacob Faibussowitsch {
6605c58f1c22SToby Isaac   DMLabel label;
6606c58f1c22SToby Isaac 
6607c58f1c22SToby Isaac   PetscFunctionBegin;
6608c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6609c58f1c22SToby Isaac   PetscValidCharPointer(name, 2);
66109566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6611c58f1c22SToby Isaac   if (!label) {
66129566063dSJacob Faibussowitsch     PetscCall(DMCreateLabel(dm, name));
66139566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, name, &label));
6614c58f1c22SToby Isaac   }
66159566063dSJacob Faibussowitsch   PetscCall(DMLabelSetValue(label, point, value));
6616c58f1c22SToby Isaac   PetscFunctionReturn(0);
6617c58f1c22SToby Isaac }
6618c58f1c22SToby Isaac 
6619c58f1c22SToby Isaac /*@C
6620bb7acecfSBarry Smith   DMClearLabelValue - Remove a point from a `DMLabel` with given value
6621c58f1c22SToby Isaac 
6622c58f1c22SToby Isaac   Not Collective
6623c58f1c22SToby Isaac 
6624c58f1c22SToby Isaac   Input Parameters:
6625bb7acecfSBarry Smith + dm   - The `DM` object
6626c58f1c22SToby Isaac . name - The label name
6627c58f1c22SToby Isaac . point - The mesh point
6628c58f1c22SToby Isaac - value - The label value for this point
6629c58f1c22SToby Isaac 
6630c58f1c22SToby Isaac   Level: beginner
6631c58f1c22SToby Isaac 
6632db781477SPatrick Sanan .seealso: `DMLabelClearValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6633c58f1c22SToby Isaac @*/
6634d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelValue(DM dm, const char name[], PetscInt point, PetscInt value)
6635d71ae5a4SJacob Faibussowitsch {
6636c58f1c22SToby Isaac   DMLabel label;
6637c58f1c22SToby Isaac 
6638c58f1c22SToby Isaac   PetscFunctionBegin;
6639c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6640c58f1c22SToby Isaac   PetscValidCharPointer(name, 2);
66419566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6642c58f1c22SToby Isaac   if (!label) PetscFunctionReturn(0);
66439566063dSJacob Faibussowitsch   PetscCall(DMLabelClearValue(label, point, value));
6644c58f1c22SToby Isaac   PetscFunctionReturn(0);
6645c58f1c22SToby Isaac }
6646c58f1c22SToby Isaac 
6647c58f1c22SToby Isaac /*@C
6648bb7acecfSBarry Smith   DMGetLabelSize - Get the value of `DMLabelGetNumValues()` of a `DMLabel` in the `DM`
6649c58f1c22SToby Isaac 
6650c58f1c22SToby Isaac   Not Collective
6651c58f1c22SToby Isaac 
6652c58f1c22SToby Isaac   Input Parameters:
6653bb7acecfSBarry Smith + dm   - The `DM` object
6654c58f1c22SToby Isaac - name - The label name
6655c58f1c22SToby Isaac 
6656c58f1c22SToby Isaac   Output Parameter:
6657c58f1c22SToby Isaac . size - The number of different integer ids, or 0 if the label does not exist
6658c58f1c22SToby Isaac 
6659c58f1c22SToby Isaac   Level: beginner
6660c58f1c22SToby Isaac 
6661bb7acecfSBarry Smith   Developer Note:
6662bb7acecfSBarry Smith   This should be renamed to something like `DMGetLabelNumValues()` or removed.
6663bb7acecfSBarry Smith 
6664bb7acecfSBarry Smith .seealso: `DMLabelGetNumValues()`, `DMSetLabelValue()`, `DMGetLabel()`
6665c58f1c22SToby Isaac @*/
6666d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelSize(DM dm, const char name[], PetscInt *size)
6667d71ae5a4SJacob Faibussowitsch {
6668c58f1c22SToby Isaac   DMLabel label;
6669c58f1c22SToby Isaac 
6670c58f1c22SToby Isaac   PetscFunctionBegin;
6671c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6672c58f1c22SToby Isaac   PetscValidCharPointer(name, 2);
6673534a8f05SLisandro Dalcin   PetscValidIntPointer(size, 3);
66749566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6675c58f1c22SToby Isaac   *size = 0;
6676c58f1c22SToby Isaac   if (!label) PetscFunctionReturn(0);
66779566063dSJacob Faibussowitsch   PetscCall(DMLabelGetNumValues(label, size));
6678c58f1c22SToby Isaac   PetscFunctionReturn(0);
6679c58f1c22SToby Isaac }
6680c58f1c22SToby Isaac 
6681c58f1c22SToby Isaac /*@C
6682bb7acecfSBarry Smith   DMGetLabelIdIS - Get the `DMLabelGetValueIS()` from a `DMLabel` in the `DM`
6683c58f1c22SToby Isaac 
6684c58f1c22SToby Isaac   Not Collective
6685c58f1c22SToby Isaac 
6686c58f1c22SToby Isaac   Input Parameters:
6687bb7acecfSBarry Smith + mesh - The `DM` object
6688c58f1c22SToby Isaac - name - The label name
6689c58f1c22SToby Isaac 
6690c58f1c22SToby Isaac   Output Parameter:
6691c58f1c22SToby Isaac . ids - The integer ids, or NULL if the label does not exist
6692c58f1c22SToby Isaac 
6693c58f1c22SToby Isaac   Level: beginner
6694c58f1c22SToby Isaac 
6695db781477SPatrick Sanan .seealso: `DMLabelGetValueIS()`, `DMGetLabelSize()`
6696c58f1c22SToby Isaac @*/
6697d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelIdIS(DM dm, const char name[], IS *ids)
6698d71ae5a4SJacob Faibussowitsch {
6699c58f1c22SToby Isaac   DMLabel label;
6700c58f1c22SToby Isaac 
6701c58f1c22SToby Isaac   PetscFunctionBegin;
6702c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6703c58f1c22SToby Isaac   PetscValidCharPointer(name, 2);
6704c58f1c22SToby Isaac   PetscValidPointer(ids, 3);
67059566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6706c58f1c22SToby Isaac   *ids = NULL;
6707dab2e251SBlaise Bourdin   if (label) {
67089566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValueIS(label, ids));
6709dab2e251SBlaise Bourdin   } else {
6710dab2e251SBlaise Bourdin     /* returning an empty IS */
67119566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_USE_POINTER, ids));
6712dab2e251SBlaise Bourdin   }
6713c58f1c22SToby Isaac   PetscFunctionReturn(0);
6714c58f1c22SToby Isaac }
6715c58f1c22SToby Isaac 
6716c58f1c22SToby Isaac /*@C
6717c58f1c22SToby Isaac   DMGetStratumSize - Get the number of points in a label stratum
6718c58f1c22SToby Isaac 
6719c58f1c22SToby Isaac   Not Collective
6720c58f1c22SToby Isaac 
6721c58f1c22SToby Isaac   Input Parameters:
6722bb7acecfSBarry Smith + dm - The `DM` object
6723c58f1c22SToby Isaac . name - The label name
6724c58f1c22SToby Isaac - value - The stratum value
6725c58f1c22SToby Isaac 
6726c58f1c22SToby Isaac   Output Parameter:
6727bb7acecfSBarry Smith . size - The number of points, also called the stratum size
6728c58f1c22SToby Isaac 
6729c58f1c22SToby Isaac   Level: beginner
6730c58f1c22SToby Isaac 
6731db781477SPatrick Sanan .seealso: `DMLabelGetStratumSize()`, `DMGetLabelSize()`, `DMGetLabelIds()`
6732c58f1c22SToby Isaac @*/
6733d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumSize(DM dm, const char name[], PetscInt value, PetscInt *size)
6734d71ae5a4SJacob Faibussowitsch {
6735c58f1c22SToby Isaac   DMLabel label;
6736c58f1c22SToby Isaac 
6737c58f1c22SToby Isaac   PetscFunctionBegin;
6738c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6739c58f1c22SToby Isaac   PetscValidCharPointer(name, 2);
6740534a8f05SLisandro Dalcin   PetscValidIntPointer(size, 4);
67419566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6742c58f1c22SToby Isaac   *size = 0;
6743c58f1c22SToby Isaac   if (!label) PetscFunctionReturn(0);
67449566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumSize(label, value, size));
6745c58f1c22SToby Isaac   PetscFunctionReturn(0);
6746c58f1c22SToby Isaac }
6747c58f1c22SToby Isaac 
6748c58f1c22SToby Isaac /*@C
6749c58f1c22SToby Isaac   DMGetStratumIS - Get the points in a label stratum
6750c58f1c22SToby Isaac 
6751c58f1c22SToby Isaac   Not Collective
6752c58f1c22SToby Isaac 
6753c58f1c22SToby Isaac   Input Parameters:
6754bb7acecfSBarry Smith + dm - The `DM` object
6755c58f1c22SToby Isaac . name - The label name
6756c58f1c22SToby Isaac - value - The stratum value
6757c58f1c22SToby Isaac 
6758c58f1c22SToby Isaac   Output Parameter:
6759c58f1c22SToby Isaac . points - The stratum points, or NULL if the label does not exist or does not have that value
6760c58f1c22SToby Isaac 
6761c58f1c22SToby Isaac   Level: beginner
6762c58f1c22SToby Isaac 
6763db781477SPatrick Sanan .seealso: `DMLabelGetStratumIS()`, `DMGetStratumSize()`
6764c58f1c22SToby Isaac @*/
6765d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumIS(DM dm, const char name[], PetscInt value, IS *points)
6766d71ae5a4SJacob Faibussowitsch {
6767c58f1c22SToby Isaac   DMLabel label;
6768c58f1c22SToby Isaac 
6769c58f1c22SToby Isaac   PetscFunctionBegin;
6770c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6771c58f1c22SToby Isaac   PetscValidCharPointer(name, 2);
6772c58f1c22SToby Isaac   PetscValidPointer(points, 4);
67739566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6774c58f1c22SToby Isaac   *points = NULL;
6775c58f1c22SToby Isaac   if (!label) PetscFunctionReturn(0);
67769566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(label, value, points));
6777c58f1c22SToby Isaac   PetscFunctionReturn(0);
6778c58f1c22SToby Isaac }
6779c58f1c22SToby Isaac 
67804de306b1SToby Isaac /*@C
67819044fa66SMatthew G. Knepley   DMSetStratumIS - Set the points in a label stratum
67824de306b1SToby Isaac 
67834de306b1SToby Isaac   Not Collective
67844de306b1SToby Isaac 
67854de306b1SToby Isaac   Input Parameters:
6786bb7acecfSBarry Smith + dm - The `DM` object
67874de306b1SToby Isaac . name - The label name
67884de306b1SToby Isaac . value - The stratum value
67894de306b1SToby Isaac - points - The stratum points
67904de306b1SToby Isaac 
67914de306b1SToby Isaac   Level: beginner
67924de306b1SToby Isaac 
6793bb7acecfSBarry Smith .seealso: `DMLabel`, `DMClearLabelStratum()`, `DMLabelClearStratum()`, `DMLabelSetStratumIS()`, `DMGetStratumSize()`
67944de306b1SToby Isaac @*/
6795d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetStratumIS(DM dm, const char name[], PetscInt value, IS points)
6796d71ae5a4SJacob Faibussowitsch {
67974de306b1SToby Isaac   DMLabel label;
67984de306b1SToby Isaac 
67994de306b1SToby Isaac   PetscFunctionBegin;
68004de306b1SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
68014de306b1SToby Isaac   PetscValidCharPointer(name, 2);
68024de306b1SToby Isaac   PetscValidPointer(points, 4);
68039566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
68044de306b1SToby Isaac   if (!label) PetscFunctionReturn(0);
68059566063dSJacob Faibussowitsch   PetscCall(DMLabelSetStratumIS(label, value, points));
68064de306b1SToby Isaac   PetscFunctionReturn(0);
68074de306b1SToby Isaac }
68084de306b1SToby Isaac 
6809c58f1c22SToby Isaac /*@C
6810bb7acecfSBarry Smith   DMClearLabelStratum - Remove all points from a stratum from a `DMLabel`
6811c58f1c22SToby Isaac 
6812c58f1c22SToby Isaac   Not Collective
6813c58f1c22SToby Isaac 
6814c58f1c22SToby Isaac   Input Parameters:
6815bb7acecfSBarry Smith + dm   - The `DM` object
6816c58f1c22SToby Isaac . name - The label name
6817c58f1c22SToby Isaac - value - The label value for this point
6818c58f1c22SToby Isaac 
6819c58f1c22SToby Isaac   Output Parameter:
6820c58f1c22SToby Isaac 
6821c58f1c22SToby Isaac   Level: beginner
6822c58f1c22SToby Isaac 
6823bb7acecfSBarry Smith .seealso: `DMLabel`, `DMLabelClearStratum()`, `DMSetLabelValue()`, `DMGetStratumIS()`, `DMClearLabelValue()`
6824c58f1c22SToby Isaac @*/
6825d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelStratum(DM dm, const char name[], PetscInt value)
6826d71ae5a4SJacob Faibussowitsch {
6827c58f1c22SToby Isaac   DMLabel label;
6828c58f1c22SToby Isaac 
6829c58f1c22SToby Isaac   PetscFunctionBegin;
6830c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6831c58f1c22SToby Isaac   PetscValidCharPointer(name, 2);
68329566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6833c58f1c22SToby Isaac   if (!label) PetscFunctionReturn(0);
68349566063dSJacob Faibussowitsch   PetscCall(DMLabelClearStratum(label, value));
6835c58f1c22SToby Isaac   PetscFunctionReturn(0);
6836c58f1c22SToby Isaac }
6837c58f1c22SToby Isaac 
6838c58f1c22SToby Isaac /*@
6839bb7acecfSBarry Smith   DMGetNumLabels - Return the number of labels defined by on the `DM`
6840c58f1c22SToby Isaac 
6841c58f1c22SToby Isaac   Not Collective
6842c58f1c22SToby Isaac 
6843c58f1c22SToby Isaac   Input Parameter:
6844bb7acecfSBarry Smith . dm   - The `DM` object
6845c58f1c22SToby Isaac 
6846c58f1c22SToby Isaac   Output Parameter:
6847c58f1c22SToby Isaac . numLabels - the number of Labels
6848c58f1c22SToby Isaac 
6849c58f1c22SToby Isaac   Level: intermediate
6850c58f1c22SToby Isaac 
6851bb7acecfSBarry Smith .seealso: `DMLabel`, `DMGetLabelByNum()`, `DMGetLabelName()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6852c58f1c22SToby Isaac @*/
6853d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumLabels(DM dm, PetscInt *numLabels)
6854d71ae5a4SJacob Faibussowitsch {
68555d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
6856c58f1c22SToby Isaac   PetscInt    n    = 0;
6857c58f1c22SToby Isaac 
6858c58f1c22SToby Isaac   PetscFunctionBegin;
6859c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6860534a8f05SLisandro Dalcin   PetscValidIntPointer(numLabels, 2);
68619371c9d4SSatish Balay   while (next) {
68629371c9d4SSatish Balay     ++n;
68639371c9d4SSatish Balay     next = next->next;
68649371c9d4SSatish Balay   }
6865c58f1c22SToby Isaac   *numLabels = n;
6866c58f1c22SToby Isaac   PetscFunctionReturn(0);
6867c58f1c22SToby Isaac }
6868c58f1c22SToby Isaac 
6869c58f1c22SToby Isaac /*@C
6870c58f1c22SToby Isaac   DMGetLabelName - Return the name of nth label
6871c58f1c22SToby Isaac 
6872c58f1c22SToby Isaac   Not Collective
6873c58f1c22SToby Isaac 
6874c58f1c22SToby Isaac   Input Parameters:
6875bb7acecfSBarry Smith + dm - The `DM` object
6876c58f1c22SToby Isaac - n  - the label number
6877c58f1c22SToby Isaac 
6878c58f1c22SToby Isaac   Output Parameter:
6879c58f1c22SToby Isaac . name - the label name
6880c58f1c22SToby Isaac 
6881c58f1c22SToby Isaac   Level: intermediate
6882c58f1c22SToby Isaac 
6883bb7acecfSBarry Smith   Developer Note:
6884bb7acecfSBarry Smith   Some of the functions that appropriate on labels using their number have the suffix ByNum, others do not.
6885bb7acecfSBarry Smith 
6886bb7acecfSBarry Smith .seealso: `DMLabel`, `DMGetLabelByNum()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6887c58f1c22SToby Isaac @*/
6888d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelName(DM dm, PetscInt n, const char **name)
6889d71ae5a4SJacob Faibussowitsch {
68905d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
6891c58f1c22SToby Isaac   PetscInt    l    = 0;
6892c58f1c22SToby Isaac 
6893c58f1c22SToby Isaac   PetscFunctionBegin;
6894c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6895c58f1c22SToby Isaac   PetscValidPointer(name, 3);
6896c58f1c22SToby Isaac   while (next) {
6897c58f1c22SToby Isaac     if (l == n) {
68989566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetName((PetscObject)next->label, name));
6899c58f1c22SToby Isaac       PetscFunctionReturn(0);
6900c58f1c22SToby Isaac     }
6901c58f1c22SToby Isaac     ++l;
6902c58f1c22SToby Isaac     next = next->next;
6903c58f1c22SToby Isaac   }
690463a3b9bcSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n);
6905c58f1c22SToby Isaac }
6906c58f1c22SToby Isaac 
6907c58f1c22SToby Isaac /*@C
6908bb7acecfSBarry Smith   DMHasLabel - Determine whether the `DM` has a label of a given name
6909c58f1c22SToby Isaac 
6910c58f1c22SToby Isaac   Not Collective
6911c58f1c22SToby Isaac 
6912c58f1c22SToby Isaac   Input Parameters:
6913bb7acecfSBarry Smith + dm   - The `DM` object
6914c58f1c22SToby Isaac - name - The label name
6915c58f1c22SToby Isaac 
6916c58f1c22SToby Isaac   Output Parameter:
6917bb7acecfSBarry Smith . hasLabel - `PETSC_TRUE` if the label is present
6918c58f1c22SToby Isaac 
6919c58f1c22SToby Isaac   Level: intermediate
6920c58f1c22SToby Isaac 
6921bb7acecfSBarry Smith .seealso: `DMLabel`, `DMGetLabel()`, `DMGetLabelByNum()`, `DMCreateLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6922c58f1c22SToby Isaac @*/
6923d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasLabel(DM dm, const char name[], PetscBool *hasLabel)
6924d71ae5a4SJacob Faibussowitsch {
69255d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
6926d67d17b1SMatthew G. Knepley   const char *lname;
6927c58f1c22SToby Isaac 
6928c58f1c22SToby Isaac   PetscFunctionBegin;
6929c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6930c58f1c22SToby Isaac   PetscValidCharPointer(name, 2);
6931534a8f05SLisandro Dalcin   PetscValidBoolPointer(hasLabel, 3);
6932c58f1c22SToby Isaac   *hasLabel = PETSC_FALSE;
6933c58f1c22SToby Isaac   while (next) {
69349566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
69359566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, hasLabel));
6936c58f1c22SToby Isaac     if (*hasLabel) break;
6937c58f1c22SToby Isaac     next = next->next;
6938c58f1c22SToby Isaac   }
6939c58f1c22SToby Isaac   PetscFunctionReturn(0);
6940c58f1c22SToby Isaac }
6941c58f1c22SToby Isaac 
6942c58f1c22SToby Isaac /*@C
6943bb7acecfSBarry Smith   DMGetLabel - Return the label of a given name, or NULL, from a `DM`
6944c58f1c22SToby Isaac 
6945c58f1c22SToby Isaac   Not Collective
6946c58f1c22SToby Isaac 
6947c58f1c22SToby Isaac   Input Parameters:
6948bb7acecfSBarry Smith + dm   - The `DM` object
6949c58f1c22SToby Isaac - name - The label name
6950c58f1c22SToby Isaac 
6951c58f1c22SToby Isaac   Output Parameter:
6952bb7acecfSBarry Smith . label - The `DMLabel`, or NULL if the label is absent
6953c58f1c22SToby Isaac 
6954bb7acecfSBarry Smith   Default labels in a `DMPLEX`:
6955bb7acecfSBarry Smith +   "depth"       - Holds the depth (co-dimension) of each mesh point
6956bb7acecfSBarry Smith .   "celltype"    - Holds the topological type of each cell
6957bb7acecfSBarry Smith .   "ghost"       - If the DM is distributed with overlap, this marks the cells and faces in the overlap
6958bb7acecfSBarry Smith .   "Cell Sets"   - Mirrors the cell sets defined by GMsh and ExodusII
6959bb7acecfSBarry Smith .   "Face Sets"   - Mirrors the face sets defined by GMsh and ExodusII
6960bb7acecfSBarry Smith -  "Vertex Sets" - Mirrors the vertex sets defined by GMsh
69616d7c9049SMatthew G. Knepley 
6962c58f1c22SToby Isaac   Level: intermediate
6963c58f1c22SToby Isaac 
6964bb7acecfSBarry Smith .seealso: `DMLabel`, `DMHasLabel()`, `DMGetLabelByNum()`, `DMAddLabel()`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()`
6965c58f1c22SToby Isaac @*/
6966d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabel(DM dm, const char name[], DMLabel *label)
6967d71ae5a4SJacob Faibussowitsch {
69685d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
6969c58f1c22SToby Isaac   PetscBool   hasLabel;
6970d67d17b1SMatthew G. Knepley   const char *lname;
6971c58f1c22SToby Isaac 
6972c58f1c22SToby Isaac   PetscFunctionBegin;
6973c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6974c58f1c22SToby Isaac   PetscValidCharPointer(name, 2);
6975c58f1c22SToby Isaac   PetscValidPointer(label, 3);
6976c58f1c22SToby Isaac   *label = NULL;
6977c58f1c22SToby Isaac   while (next) {
69789566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
69799566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &hasLabel));
6980c58f1c22SToby Isaac     if (hasLabel) {
6981c58f1c22SToby Isaac       *label = next->label;
6982c58f1c22SToby Isaac       break;
6983c58f1c22SToby Isaac     }
6984c58f1c22SToby Isaac     next = next->next;
6985c58f1c22SToby Isaac   }
6986c58f1c22SToby Isaac   PetscFunctionReturn(0);
6987c58f1c22SToby Isaac }
6988c58f1c22SToby Isaac 
6989c58f1c22SToby Isaac /*@C
6990bb7acecfSBarry Smith   DMGetLabelByNum - Return the nth label on a `DM`
6991c58f1c22SToby Isaac 
6992c58f1c22SToby Isaac   Not Collective
6993c58f1c22SToby Isaac 
6994c58f1c22SToby Isaac   Input Parameters:
6995bb7acecfSBarry Smith + dm - The `DM` object
6996c58f1c22SToby Isaac - n  - the label number
6997c58f1c22SToby Isaac 
6998c58f1c22SToby Isaac   Output Parameter:
6999c58f1c22SToby Isaac . label - the label
7000c58f1c22SToby Isaac 
7001c58f1c22SToby Isaac   Level: intermediate
7002c58f1c22SToby Isaac 
7003bb7acecfSBarry Smith .seealso: `DMLabel`, `DMAddLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7004c58f1c22SToby Isaac @*/
7005d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelByNum(DM dm, PetscInt n, DMLabel *label)
7006d71ae5a4SJacob Faibussowitsch {
70075d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7008c58f1c22SToby Isaac   PetscInt    l    = 0;
7009c58f1c22SToby Isaac 
7010c58f1c22SToby Isaac   PetscFunctionBegin;
7011c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7012c58f1c22SToby Isaac   PetscValidPointer(label, 3);
7013c58f1c22SToby Isaac   while (next) {
7014c58f1c22SToby Isaac     if (l == n) {
7015c58f1c22SToby Isaac       *label = next->label;
7016c58f1c22SToby Isaac       PetscFunctionReturn(0);
7017c58f1c22SToby Isaac     }
7018c58f1c22SToby Isaac     ++l;
7019c58f1c22SToby Isaac     next = next->next;
7020c58f1c22SToby Isaac   }
702163a3b9bcSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n);
7022c58f1c22SToby Isaac }
7023c58f1c22SToby Isaac 
7024c58f1c22SToby Isaac /*@C
7025bb7acecfSBarry Smith   DMAddLabel - Add the label to this `DM`
7026c58f1c22SToby Isaac 
7027c58f1c22SToby Isaac   Not Collective
7028c58f1c22SToby Isaac 
7029c58f1c22SToby Isaac   Input Parameters:
7030bb7acecfSBarry Smith + dm   - The `DM` object
7031bb7acecfSBarry Smith - label - The `DMLabel`
7032c58f1c22SToby Isaac 
7033c58f1c22SToby Isaac   Level: developer
7034c58f1c22SToby Isaac 
7035bb7acecfSBarry Smith .seealso: `DMLabel`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7036c58f1c22SToby Isaac @*/
7037d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddLabel(DM dm, DMLabel label)
7038d71ae5a4SJacob Faibussowitsch {
70395d80c0bfSVaclav Hapla   DMLabelLink l, *p, tmpLabel;
7040c58f1c22SToby Isaac   PetscBool   hasLabel;
7041d67d17b1SMatthew G. Knepley   const char *lname;
70425d80c0bfSVaclav Hapla   PetscBool   flg;
7043c58f1c22SToby Isaac 
7044c58f1c22SToby Isaac   PetscFunctionBegin;
7045c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
70469566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetName((PetscObject)label, &lname));
70479566063dSJacob Faibussowitsch   PetscCall(DMHasLabel(dm, lname, &hasLabel));
70487a8be351SBarry Smith   PetscCheck(!hasLabel, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in this DM", lname);
70499566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(1, &tmpLabel));
7050c58f1c22SToby Isaac   tmpLabel->label  = label;
7051c58f1c22SToby Isaac   tmpLabel->output = PETSC_TRUE;
70525d80c0bfSVaclav Hapla   for (p = &dm->labels; (l = *p); p = &l->next) { }
70535d80c0bfSVaclav Hapla   *p = tmpLabel;
70549566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
70559566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(lname, "depth", &flg));
70565d80c0bfSVaclav Hapla   if (flg) dm->depthLabel = label;
70579566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(lname, "celltype", &flg));
7058ba2698f1SMatthew G. Knepley   if (flg) dm->celltypeLabel = label;
7059c58f1c22SToby Isaac   PetscFunctionReturn(0);
7060c58f1c22SToby Isaac }
7061c58f1c22SToby Isaac 
7062c58f1c22SToby Isaac /*@C
70634a7ee7d0SMatthew G. Knepley   DMSetLabel - Replaces the label of a given name, or ignores it if the name is not present
70644a7ee7d0SMatthew G. Knepley 
70654a7ee7d0SMatthew G. Knepley   Not Collective
70664a7ee7d0SMatthew G. Knepley 
70674a7ee7d0SMatthew G. Knepley   Input Parameters:
7068bb7acecfSBarry Smith + dm    - The `DM` object
7069bb7acecfSBarry Smith - label - The `DMLabel`, having the same name, to substitute
70704a7ee7d0SMatthew G. Knepley 
7071bb7acecfSBarry Smith   Default labels in a `DMPLEX`:
7072bb7acecfSBarry Smith +  "depth"       - Holds the depth (co-dimension) of each mesh point
7073bb7acecfSBarry Smith .  "celltype"    - Holds the topological type of each cell
7074bb7acecfSBarry Smith .  "ghost"       - If the DM is distributed with overlap, this marks the cells and faces in the overlap
7075bb7acecfSBarry Smith .  "Cell Sets"   - Mirrors the cell sets defined by GMsh and ExodusII
7076bb7acecfSBarry Smith .  "Face Sets"   - Mirrors the face sets defined by GMsh and ExodusII
7077bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh
70784a7ee7d0SMatthew G. Knepley 
70794a7ee7d0SMatthew G. Knepley   Level: intermediate
70804a7ee7d0SMatthew G. Knepley 
7081bb7acecfSBarry Smith .seealso: `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()`
70824a7ee7d0SMatthew G. Knepley @*/
7083d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabel(DM dm, DMLabel label)
7084d71ae5a4SJacob Faibussowitsch {
70854a7ee7d0SMatthew G. Knepley   DMLabelLink next = dm->labels;
70864a7ee7d0SMatthew G. Knepley   PetscBool   hasLabel, flg;
70874a7ee7d0SMatthew G. Knepley   const char *name, *lname;
70884a7ee7d0SMatthew G. Knepley 
70894a7ee7d0SMatthew G. Knepley   PetscFunctionBegin;
70904a7ee7d0SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
70914a7ee7d0SMatthew G. Knepley   PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
70929566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetName((PetscObject)label, &name));
70934a7ee7d0SMatthew G. Knepley   while (next) {
70949566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
70959566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &hasLabel));
70964a7ee7d0SMatthew G. Knepley     if (hasLabel) {
70979566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)label));
70989566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(lname, "depth", &flg));
70994a7ee7d0SMatthew G. Knepley       if (flg) dm->depthLabel = label;
71009566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(lname, "celltype", &flg));
71014a7ee7d0SMatthew G. Knepley       if (flg) dm->celltypeLabel = label;
71029566063dSJacob Faibussowitsch       PetscCall(DMLabelDestroy(&next->label));
71034a7ee7d0SMatthew G. Knepley       next->label = label;
71044a7ee7d0SMatthew G. Knepley       break;
71054a7ee7d0SMatthew G. Knepley     }
71064a7ee7d0SMatthew G. Knepley     next = next->next;
71074a7ee7d0SMatthew G. Knepley   }
71084a7ee7d0SMatthew G. Knepley   PetscFunctionReturn(0);
71094a7ee7d0SMatthew G. Knepley }
71104a7ee7d0SMatthew G. Knepley 
71114a7ee7d0SMatthew G. Knepley /*@C
7112bb7acecfSBarry Smith   DMRemoveLabel - Remove the label given by name from this `DM`
7113c58f1c22SToby Isaac 
7114c58f1c22SToby Isaac   Not Collective
7115c58f1c22SToby Isaac 
7116c58f1c22SToby Isaac   Input Parameters:
7117bb7acecfSBarry Smith + dm   - The `DM` object
7118c58f1c22SToby Isaac - name - The label name
7119c58f1c22SToby Isaac 
7120c58f1c22SToby Isaac   Output Parameter:
7121bb7acecfSBarry Smith . label - The `DMLabel`, or NULL if the label is absent. Pass in NULL to call `DMLabelDestroy()` on the label, otherwise the
7122bb7acecfSBarry Smith           caller is responsible for calling `DMLabelDestroy()`.
7123c58f1c22SToby Isaac 
7124c58f1c22SToby Isaac   Level: developer
7125c58f1c22SToby Isaac 
7126bb7acecfSBarry Smith .seealso: `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabelBySelf()`
7127c58f1c22SToby Isaac @*/
7128d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabel(DM dm, const char name[], DMLabel *label)
7129d71ae5a4SJacob Faibussowitsch {
713095d578d6SVaclav Hapla   DMLabelLink link, *pnext;
7131c58f1c22SToby Isaac   PetscBool   hasLabel;
7132d67d17b1SMatthew G. Knepley   const char *lname;
7133c58f1c22SToby Isaac 
7134c58f1c22SToby Isaac   PetscFunctionBegin;
7135c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7136e5472504SVaclav Hapla   PetscValidCharPointer(name, 2);
7137e5472504SVaclav Hapla   if (label) {
7138e5472504SVaclav Hapla     PetscValidPointer(label, 3);
7139c58f1c22SToby Isaac     *label = NULL;
7140e5472504SVaclav Hapla   }
71415d80c0bfSVaclav Hapla   for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) {
71429566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)link->label, &lname));
71439566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &hasLabel));
7144c58f1c22SToby Isaac     if (hasLabel) {
714595d578d6SVaclav Hapla       *pnext = link->next; /* Remove from list */
71469566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "depth", &hasLabel));
714795d578d6SVaclav Hapla       if (hasLabel) dm->depthLabel = NULL;
71489566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "celltype", &hasLabel));
7149ba2698f1SMatthew G. Knepley       if (hasLabel) dm->celltypeLabel = NULL;
715095d578d6SVaclav Hapla       if (label) *label = link->label;
71519566063dSJacob Faibussowitsch       else PetscCall(DMLabelDestroy(&link->label));
71529566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
7153c58f1c22SToby Isaac       break;
7154c58f1c22SToby Isaac     }
7155c58f1c22SToby Isaac   }
7156c58f1c22SToby Isaac   PetscFunctionReturn(0);
7157c58f1c22SToby Isaac }
7158c58f1c22SToby Isaac 
7159306894acSVaclav Hapla /*@
7160bb7acecfSBarry Smith   DMRemoveLabelBySelf - Remove the label from this `DM`
7161306894acSVaclav Hapla 
7162306894acSVaclav Hapla   Not Collective
7163306894acSVaclav Hapla 
7164306894acSVaclav Hapla   Input Parameters:
7165bb7acecfSBarry Smith + dm   - The `DM` object
7166bb7acecfSBarry Smith . label - The `DMLabel` to be removed from the `DM`
7167306894acSVaclav Hapla - failNotFound - Should it fail if the label is not found in the DM?
7168306894acSVaclav Hapla 
7169306894acSVaclav Hapla   Level: developer
7170306894acSVaclav Hapla 
7171bb7acecfSBarry Smith   Note:
7172306894acSVaclav Hapla   Only exactly the same instance is removed if found, name match is ignored.
7173bb7acecfSBarry Smith   If the `DM` has an exclusive reference to the label, the label gets destroyed and
7174306894acSVaclav Hapla   *label nullified.
7175306894acSVaclav Hapla 
7176bb7acecfSBarry Smith .seealso: `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()` `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabel()`
7177306894acSVaclav Hapla @*/
7178d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabelBySelf(DM dm, DMLabel *label, PetscBool failNotFound)
7179d71ae5a4SJacob Faibussowitsch {
718043e45a93SVaclav Hapla   DMLabelLink link, *pnext;
7181306894acSVaclav Hapla   PetscBool   hasLabel = PETSC_FALSE;
7182306894acSVaclav Hapla 
7183306894acSVaclav Hapla   PetscFunctionBegin;
7184306894acSVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7185306894acSVaclav Hapla   PetscValidPointer(label, 2);
7186f39a9ae0SVaclav Hapla   if (!*label && !failNotFound) PetscFunctionReturn(0);
7187306894acSVaclav Hapla   PetscValidHeaderSpecific(*label, DMLABEL_CLASSID, 2);
7188306894acSVaclav Hapla   PetscValidLogicalCollectiveBool(dm, failNotFound, 3);
71895d80c0bfSVaclav Hapla   for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) {
719043e45a93SVaclav Hapla     if (*label == link->label) {
7191306894acSVaclav Hapla       hasLabel = PETSC_TRUE;
719243e45a93SVaclav Hapla       *pnext   = link->next; /* Remove from list */
7193306894acSVaclav Hapla       if (*label == dm->depthLabel) dm->depthLabel = NULL;
7194ba2698f1SMatthew G. Knepley       if (*label == dm->celltypeLabel) dm->celltypeLabel = NULL;
719543e45a93SVaclav Hapla       if (((PetscObject)link->label)->refct < 2) *label = NULL; /* nullify if exclusive reference */
71969566063dSJacob Faibussowitsch       PetscCall(DMLabelDestroy(&link->label));
71979566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
7198306894acSVaclav Hapla       break;
7199306894acSVaclav Hapla     }
7200306894acSVaclav Hapla   }
72017a8be351SBarry Smith   PetscCheck(hasLabel || !failNotFound, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Given label not found in DM");
7202306894acSVaclav Hapla   PetscFunctionReturn(0);
7203306894acSVaclav Hapla }
7204306894acSVaclav Hapla 
7205c58f1c22SToby Isaac /*@C
7206c58f1c22SToby Isaac   DMGetLabelOutput - Get the output flag for a given label
7207c58f1c22SToby Isaac 
7208c58f1c22SToby Isaac   Not Collective
7209c58f1c22SToby Isaac 
7210c58f1c22SToby Isaac   Input Parameters:
7211bb7acecfSBarry Smith + dm   - The `DM` object
7212c58f1c22SToby Isaac - name - The label name
7213c58f1c22SToby Isaac 
7214c58f1c22SToby Isaac   Output Parameter:
7215c58f1c22SToby Isaac . output - The flag for output
7216c58f1c22SToby Isaac 
7217c58f1c22SToby Isaac   Level: developer
7218c58f1c22SToby Isaac 
7219bb7acecfSBarry Smith .seealso: `DMLabel`, `DMSetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7220c58f1c22SToby Isaac @*/
7221d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelOutput(DM dm, const char name[], PetscBool *output)
7222d71ae5a4SJacob Faibussowitsch {
72235d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7224d67d17b1SMatthew G. Knepley   const char *lname;
7225c58f1c22SToby Isaac 
7226c58f1c22SToby Isaac   PetscFunctionBegin;
7227c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7228dadcf809SJacob Faibussowitsch   PetscValidCharPointer(name, 2);
7229dadcf809SJacob Faibussowitsch   PetscValidBoolPointer(output, 3);
7230c58f1c22SToby Isaac   while (next) {
7231c58f1c22SToby Isaac     PetscBool flg;
7232c58f1c22SToby Isaac 
72339566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
72349566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &flg));
72359371c9d4SSatish Balay     if (flg) {
72369371c9d4SSatish Balay       *output = next->output;
72379371c9d4SSatish Balay       PetscFunctionReturn(0);
72389371c9d4SSatish Balay     }
7239c58f1c22SToby Isaac     next = next->next;
7240c58f1c22SToby Isaac   }
724198921bdaSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name);
7242c58f1c22SToby Isaac }
7243c58f1c22SToby Isaac 
7244c58f1c22SToby Isaac /*@C
7245bb7acecfSBarry Smith   DMSetLabelOutput - Set if a given label should be saved to a `PetscViewer` in calls to `DMView()`
7246c58f1c22SToby Isaac 
7247c58f1c22SToby Isaac   Not Collective
7248c58f1c22SToby Isaac 
7249c58f1c22SToby Isaac   Input Parameters:
7250bb7acecfSBarry Smith + dm     - The `DM` object
7251c58f1c22SToby Isaac . name   - The label name
7252bb7acecfSBarry Smith - output - `PETSC_TRUE` to save the label to the viewer
7253c58f1c22SToby Isaac 
7254c58f1c22SToby Isaac   Level: developer
7255c58f1c22SToby Isaac 
7256bb7acecfSBarry Smith .seealso: `DMLabel`, `DMGetOutputFlag()`, `DMGetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7257c58f1c22SToby Isaac @*/
7258d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelOutput(DM dm, const char name[], PetscBool output)
7259d71ae5a4SJacob Faibussowitsch {
72605d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7261d67d17b1SMatthew G. Knepley   const char *lname;
7262c58f1c22SToby Isaac 
7263c58f1c22SToby Isaac   PetscFunctionBegin;
7264c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7265534a8f05SLisandro Dalcin   PetscValidCharPointer(name, 2);
7266c58f1c22SToby Isaac   while (next) {
7267c58f1c22SToby Isaac     PetscBool flg;
7268c58f1c22SToby Isaac 
72699566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
72709566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &flg));
72719371c9d4SSatish Balay     if (flg) {
72729371c9d4SSatish Balay       next->output = output;
72739371c9d4SSatish Balay       PetscFunctionReturn(0);
72749371c9d4SSatish Balay     }
7275c58f1c22SToby Isaac     next = next->next;
7276c58f1c22SToby Isaac   }
727798921bdaSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name);
7278c58f1c22SToby Isaac }
7279c58f1c22SToby Isaac 
7280c58f1c22SToby Isaac /*@
7281bb7acecfSBarry Smith   DMCopyLabels - Copy labels from one `DM` mesh to another `DM` with a superset of the points
7282c58f1c22SToby Isaac 
7283d083f849SBarry Smith   Collective on dmA
7284c58f1c22SToby Isaac 
7285d8d19677SJose E. Roman   Input Parameters:
7286bb7acecfSBarry Smith + dmA - The `DM` object with initial labels
7287bb7acecfSBarry Smith . dmB - The `DM` object to which labels are copied
7288bb7acecfSBarry Smith . mode - Copy labels by pointers (`PETSC_OWN_POINTER`) or duplicate them (`PETSC_COPY_VALUES`)
7289bb7acecfSBarry Smith . all  - Copy all labels including "depth", "dim", and "celltype" (`PETSC_TRUE`) which are otherwise ignored (`PETSC_FALSE`)
7290bb7acecfSBarry Smith - emode - How to behave when a `DMLabel` in the source and destination `DM`s with the same name is encountered (see `DMCopyLabelsMode`)
7291c58f1c22SToby Isaac 
7292c58f1c22SToby Isaac   Level: intermediate
7293c58f1c22SToby Isaac 
7294bb7acecfSBarry Smith   Note:
72952cbb9b06SVaclav Hapla   This is typically used when interpolating or otherwise adding to a mesh, or testing.
7296c58f1c22SToby Isaac 
7297bb7acecfSBarry Smith .seealso: `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`
7298c58f1c22SToby Isaac @*/
7299d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyLabels(DM dmA, DM dmB, PetscCopyMode mode, PetscBool all, DMCopyLabelsMode emode)
7300d71ae5a4SJacob Faibussowitsch {
73012cbb9b06SVaclav Hapla   DMLabel     label, labelNew, labelOld;
7302c58f1c22SToby Isaac   const char *name;
7303c58f1c22SToby Isaac   PetscBool   flg;
73045d80c0bfSVaclav Hapla   DMLabelLink link;
7305c58f1c22SToby Isaac 
73065d80c0bfSVaclav Hapla   PetscFunctionBegin;
73075d80c0bfSVaclav Hapla   PetscValidHeaderSpecific(dmA, DM_CLASSID, 1);
73085d80c0bfSVaclav Hapla   PetscValidHeaderSpecific(dmB, DM_CLASSID, 2);
73095d80c0bfSVaclav Hapla   PetscValidLogicalCollectiveEnum(dmA, mode, 3);
73105d80c0bfSVaclav Hapla   PetscValidLogicalCollectiveBool(dmA, all, 4);
73117a8be351SBarry Smith   PetscCheck(mode != PETSC_USE_POINTER, PetscObjectComm((PetscObject)dmA), PETSC_ERR_SUP, "PETSC_USE_POINTER not supported for objects");
73125d80c0bfSVaclav Hapla   if (dmA == dmB) PetscFunctionReturn(0);
73135d80c0bfSVaclav Hapla   for (link = dmA->labels; link; link = link->next) {
73145d80c0bfSVaclav Hapla     label = link->label;
73159566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)label, &name));
73165d80c0bfSVaclav Hapla     if (!all) {
73179566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "depth", &flg));
7318c58f1c22SToby Isaac       if (flg) continue;
73199566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "dim", &flg));
73207d5acc75SStefano Zampini       if (flg) continue;
73219566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "celltype", &flg));
7322ba2698f1SMatthew G. Knepley       if (flg) continue;
73235d80c0bfSVaclav Hapla     }
73249566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dmB, name, &labelOld));
73252cbb9b06SVaclav Hapla     if (labelOld) {
73262cbb9b06SVaclav Hapla       switch (emode) {
7327d71ae5a4SJacob Faibussowitsch       case DM_COPY_LABELS_KEEP:
7328d71ae5a4SJacob Faibussowitsch         continue;
7329d71ae5a4SJacob Faibussowitsch       case DM_COPY_LABELS_REPLACE:
7330d71ae5a4SJacob Faibussowitsch         PetscCall(DMRemoveLabelBySelf(dmB, &labelOld, PETSC_TRUE));
7331d71ae5a4SJacob Faibussowitsch         break;
7332d71ae5a4SJacob Faibussowitsch       case DM_COPY_LABELS_FAIL:
7333d71ae5a4SJacob Faibussowitsch         SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in destination DM", name);
7334d71ae5a4SJacob Faibussowitsch       default:
7335d71ae5a4SJacob Faibussowitsch         SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Unhandled DMCopyLabelsMode %d", (int)emode);
73362cbb9b06SVaclav Hapla       }
73372cbb9b06SVaclav Hapla     }
73385d80c0bfSVaclav Hapla     if (mode == PETSC_COPY_VALUES) {
73399566063dSJacob Faibussowitsch       PetscCall(DMLabelDuplicate(label, &labelNew));
73405d80c0bfSVaclav Hapla     } else {
73415d80c0bfSVaclav Hapla       labelNew = label;
73425d80c0bfSVaclav Hapla     }
73439566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dmB, labelNew));
73449566063dSJacob Faibussowitsch     if (mode == PETSC_COPY_VALUES) PetscCall(DMLabelDestroy(&labelNew));
7345c58f1c22SToby Isaac   }
7346c58f1c22SToby Isaac   PetscFunctionReturn(0);
7347c58f1c22SToby Isaac }
7348461a15a0SLisandro Dalcin 
7349609dae6eSVaclav Hapla /*@C
7350bb7acecfSBarry Smith   DMCompareLabels - Compare labels of two `DMPLEX` meshes
7351609dae6eSVaclav Hapla 
73525efe38ccSVaclav Hapla   Collective
7353609dae6eSVaclav Hapla 
7354609dae6eSVaclav Hapla   Input Parameters:
7355bb7acecfSBarry Smith + dm0 - First `DM` object
7356bb7acecfSBarry Smith - dm1 - Second `DM` object
7357609dae6eSVaclav Hapla 
7358609dae6eSVaclav Hapla   Output Parameters
73595efe38ccSVaclav Hapla + equal   - (Optional) Flag whether labels of dm0 and dm1 are the same
7360609dae6eSVaclav Hapla - message - (Optional) Message describing the difference, or NULL if there is no difference
7361609dae6eSVaclav Hapla 
7362609dae6eSVaclav Hapla   Level: intermediate
7363609dae6eSVaclav Hapla 
7364609dae6eSVaclav Hapla   Notes:
7365bb7acecfSBarry Smith   The output flag equal will be the same on all processes.
7366bb7acecfSBarry Smith 
7367bb7acecfSBarry Smith   If equal is passed as NULL and difference is found, an error is thrown on all processes.
7368bb7acecfSBarry Smith 
7369bb7acecfSBarry Smith   Make sure to pass equal is NULL on all processes or none of them.
7370609dae6eSVaclav Hapla 
73715efe38ccSVaclav Hapla   The output message is set independently on each rank.
7372bb7acecfSBarry Smith 
7373bb7acecfSBarry Smith   message must be freed with `PetscFree()`
7374bb7acecfSBarry Smith 
7375bb7acecfSBarry Smith   If message is passed as NULL and a difference is found, the difference description is printed to stderr in synchronized manner.
7376bb7acecfSBarry Smith 
7377bb7acecfSBarry Smith   Make sure to pass message as NULL on all processes or no processes.
7378609dae6eSVaclav Hapla 
7379609dae6eSVaclav Hapla   Labels are matched by name. If the number of labels and their names are equal,
7380bb7acecfSBarry Smith   `DMLabelCompare()` is used to compare each pair of labels with the same name.
7381609dae6eSVaclav Hapla 
7382bb7acecfSBarry Smith   Fortran Note:
7383bb7acecfSBarry Smith   This function is not available from Fortran.
7384609dae6eSVaclav Hapla 
7385bb7acecfSBarry Smith .seealso: `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`, `DMLabelCompare()`
7386609dae6eSVaclav Hapla @*/
7387d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompareLabels(DM dm0, DM dm1, PetscBool *equal, char **message)
7388d71ae5a4SJacob Faibussowitsch {
73895efe38ccSVaclav Hapla   PetscInt    n, i;
7390609dae6eSVaclav Hapla   char        msg[PETSC_MAX_PATH_LEN] = "";
73915efe38ccSVaclav Hapla   PetscBool   eq;
7392609dae6eSVaclav Hapla   MPI_Comm    comm;
73935efe38ccSVaclav Hapla   PetscMPIInt rank;
7394609dae6eSVaclav Hapla 
7395609dae6eSVaclav Hapla   PetscFunctionBegin;
7396609dae6eSVaclav Hapla   PetscValidHeaderSpecific(dm0, DM_CLASSID, 1);
7397609dae6eSVaclav Hapla   PetscValidHeaderSpecific(dm1, DM_CLASSID, 2);
7398609dae6eSVaclav Hapla   PetscCheckSameComm(dm0, 1, dm1, 2);
73995efe38ccSVaclav Hapla   if (equal) PetscValidBoolPointer(equal, 3);
7400609dae6eSVaclav Hapla   if (message) PetscValidPointer(message, 4);
74019566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm0, &comm));
74029566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
74035efe38ccSVaclav Hapla   {
74045efe38ccSVaclav Hapla     PetscInt n1;
74055efe38ccSVaclav Hapla 
74069566063dSJacob Faibussowitsch     PetscCall(DMGetNumLabels(dm0, &n));
74079566063dSJacob Faibussowitsch     PetscCall(DMGetNumLabels(dm1, &n1));
74085efe38ccSVaclav Hapla     eq = (PetscBool)(n == n1);
740948a46eb9SPierre Jolivet     if (!eq) PetscCall(PetscSNPrintf(msg, sizeof(msg), "Number of labels in dm0 = %" PetscInt_FMT " != %" PetscInt_FMT " = Number of labels in dm1", n, n1));
74109566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm));
74115efe38ccSVaclav Hapla     if (!eq) goto finish;
74125efe38ccSVaclav Hapla   }
74135efe38ccSVaclav Hapla   for (i = 0; i < n; i++) {
7414609dae6eSVaclav Hapla     DMLabel     l0, l1;
7415609dae6eSVaclav Hapla     const char *name;
7416609dae6eSVaclav Hapla     char       *msgInner;
7417609dae6eSVaclav Hapla 
7418609dae6eSVaclav Hapla     /* Ignore label order */
74199566063dSJacob Faibussowitsch     PetscCall(DMGetLabelByNum(dm0, i, &l0));
74209566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)l0, &name));
74219566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm1, name, &l1));
7422609dae6eSVaclav Hapla     if (!l1) {
742363a3b9bcSJacob Faibussowitsch       PetscCall(PetscSNPrintf(msg, sizeof(msg), "Label \"%s\" (#%" PetscInt_FMT " in dm0) not found in dm1", name, i));
74245efe38ccSVaclav Hapla       eq = PETSC_FALSE;
74255efe38ccSVaclav Hapla       break;
7426609dae6eSVaclav Hapla     }
74279566063dSJacob Faibussowitsch     PetscCall(DMLabelCompare(comm, l0, l1, &eq, &msgInner));
74289566063dSJacob Faibussowitsch     PetscCall(PetscStrncpy(msg, msgInner, sizeof(msg)));
74299566063dSJacob Faibussowitsch     PetscCall(PetscFree(msgInner));
74305efe38ccSVaclav Hapla     if (!eq) break;
7431609dae6eSVaclav Hapla   }
74329566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm));
7433609dae6eSVaclav Hapla finish:
74345efe38ccSVaclav Hapla   /* If message output arg not set, print to stderr */
7435609dae6eSVaclav Hapla   if (message) {
7436609dae6eSVaclav Hapla     *message = NULL;
743748a46eb9SPierre Jolivet     if (msg[0]) PetscCall(PetscStrallocpy(msg, message));
74385efe38ccSVaclav Hapla   } else {
743948a46eb9SPierre Jolivet     if (msg[0]) PetscCall(PetscSynchronizedFPrintf(comm, PETSC_STDERR, "[%d] %s\n", rank, msg));
74409566063dSJacob Faibussowitsch     PetscCall(PetscSynchronizedFlush(comm, PETSC_STDERR));
74415efe38ccSVaclav Hapla   }
74425efe38ccSVaclav Hapla   /* If same output arg not ser and labels are not equal, throw error */
74435efe38ccSVaclav Hapla   if (equal) *equal = eq;
74447a8be351SBarry Smith   else PetscCheck(eq, comm, PETSC_ERR_ARG_INCOMP, "DMLabels are not the same in dm0 and dm1");
7445609dae6eSVaclav Hapla   PetscFunctionReturn(0);
7446609dae6eSVaclav Hapla }
7447609dae6eSVaclav Hapla 
7448d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue_Fast(DM dm, DMLabel *label, const char name[], PetscInt point, PetscInt value)
7449d71ae5a4SJacob Faibussowitsch {
7450461a15a0SLisandro Dalcin   PetscFunctionBegin;
7451461a15a0SLisandro Dalcin   PetscValidPointer(label, 2);
7452461a15a0SLisandro Dalcin   if (!*label) {
74539566063dSJacob Faibussowitsch     PetscCall(DMCreateLabel(dm, name));
74549566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, name, label));
7455461a15a0SLisandro Dalcin   }
74569566063dSJacob Faibussowitsch   PetscCall(DMLabelSetValue(*label, point, value));
7457461a15a0SLisandro Dalcin   PetscFunctionReturn(0);
7458461a15a0SLisandro Dalcin }
7459461a15a0SLisandro Dalcin 
74600fdc7489SMatthew Knepley /*
74610fdc7489SMatthew Knepley   Many mesh programs, such as Triangle and TetGen, allow only a single label for each mesh point. Therefore, we would
74620fdc7489SMatthew Knepley   like to encode all label IDs using a single, universal label. We can do this by assigning an integer to every
74630fdc7489SMatthew Knepley   (label, id) pair in the DM.
74640fdc7489SMatthew Knepley 
74650fdc7489SMatthew Knepley   However, a mesh point can have multiple labels, so we must separate all these values. We will assign a bit range to
74660fdc7489SMatthew Knepley   each label.
74670fdc7489SMatthew Knepley */
7468d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreate(DM dm, DMUniversalLabel *universal)
7469d71ae5a4SJacob Faibussowitsch {
74700fdc7489SMatthew Knepley   DMUniversalLabel ul;
74710fdc7489SMatthew Knepley   PetscBool       *active;
74720fdc7489SMatthew Knepley   PetscInt         pStart, pEnd, p, Nl, l, m;
74730fdc7489SMatthew Knepley 
74740fdc7489SMatthew Knepley   PetscFunctionBegin;
74759566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(1, &ul));
74769566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "universal", &ul->label));
74779566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(dm, &Nl));
74789566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Nl, &active));
74790fdc7489SMatthew Knepley   ul->Nl = 0;
74800fdc7489SMatthew Knepley   for (l = 0; l < Nl; ++l) {
74810fdc7489SMatthew Knepley     PetscBool   isdepth, iscelltype;
74820fdc7489SMatthew Knepley     const char *name;
74830fdc7489SMatthew Knepley 
74849566063dSJacob Faibussowitsch     PetscCall(DMGetLabelName(dm, l, &name));
74859566063dSJacob Faibussowitsch     PetscCall(PetscStrncmp(name, "depth", 6, &isdepth));
74869566063dSJacob Faibussowitsch     PetscCall(PetscStrncmp(name, "celltype", 9, &iscelltype));
74870fdc7489SMatthew Knepley     active[l] = !(isdepth || iscelltype) ? PETSC_TRUE : PETSC_FALSE;
74880fdc7489SMatthew Knepley     if (active[l]) ++ul->Nl;
74890fdc7489SMatthew Knepley   }
74909566063dSJacob Faibussowitsch   PetscCall(PetscCalloc5(ul->Nl, &ul->names, ul->Nl, &ul->indices, ul->Nl + 1, &ul->offsets, ul->Nl + 1, &ul->bits, ul->Nl, &ul->masks));
74910fdc7489SMatthew Knepley   ul->Nv = 0;
74920fdc7489SMatthew Knepley   for (l = 0, m = 0; l < Nl; ++l) {
74930fdc7489SMatthew Knepley     DMLabel     label;
74940fdc7489SMatthew Knepley     PetscInt    nv;
74950fdc7489SMatthew Knepley     const char *name;
74960fdc7489SMatthew Knepley 
74970fdc7489SMatthew Knepley     if (!active[l]) continue;
74989566063dSJacob Faibussowitsch     PetscCall(DMGetLabelName(dm, l, &name));
74999566063dSJacob Faibussowitsch     PetscCall(DMGetLabelByNum(dm, l, &label));
75009566063dSJacob Faibussowitsch     PetscCall(DMLabelGetNumValues(label, &nv));
75019566063dSJacob Faibussowitsch     PetscCall(PetscStrallocpy(name, &ul->names[m]));
75020fdc7489SMatthew Knepley     ul->indices[m] = l;
75030fdc7489SMatthew Knepley     ul->Nv += nv;
75040fdc7489SMatthew Knepley     ul->offsets[m + 1] = nv;
75050fdc7489SMatthew Knepley     ul->bits[m + 1]    = PetscCeilReal(PetscLog2Real(nv + 1));
75060fdc7489SMatthew Knepley     ++m;
75070fdc7489SMatthew Knepley   }
75080fdc7489SMatthew Knepley   for (l = 1; l <= ul->Nl; ++l) {
75090fdc7489SMatthew Knepley     ul->offsets[l] = ul->offsets[l - 1] + ul->offsets[l];
75100fdc7489SMatthew Knepley     ul->bits[l]    = ul->bits[l - 1] + ul->bits[l];
75110fdc7489SMatthew Knepley   }
75120fdc7489SMatthew Knepley   for (l = 0; l < ul->Nl; ++l) {
75130fdc7489SMatthew Knepley     PetscInt b;
75140fdc7489SMatthew Knepley 
75150fdc7489SMatthew Knepley     ul->masks[l] = 0;
75160fdc7489SMatthew Knepley     for (b = ul->bits[l]; b < ul->bits[l + 1]; ++b) ul->masks[l] |= 1 << b;
75170fdc7489SMatthew Knepley   }
75189566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ul->Nv, &ul->values));
75190fdc7489SMatthew Knepley   for (l = 0, m = 0; l < Nl; ++l) {
75200fdc7489SMatthew Knepley     DMLabel         label;
75210fdc7489SMatthew Knepley     IS              valueIS;
75220fdc7489SMatthew Knepley     const PetscInt *varr;
75230fdc7489SMatthew Knepley     PetscInt        nv, v;
75240fdc7489SMatthew Knepley 
75250fdc7489SMatthew Knepley     if (!active[l]) continue;
75269566063dSJacob Faibussowitsch     PetscCall(DMGetLabelByNum(dm, l, &label));
75279566063dSJacob Faibussowitsch     PetscCall(DMLabelGetNumValues(label, &nv));
75289566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValueIS(label, &valueIS));
75299566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(valueIS, &varr));
7530ad540459SPierre Jolivet     for (v = 0; v < nv; ++v) ul->values[ul->offsets[m] + v] = varr[v];
75319566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(valueIS, &varr));
75329566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&valueIS));
75339566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(nv, &ul->values[ul->offsets[m]]));
75340fdc7489SMatthew Knepley     ++m;
75350fdc7489SMatthew Knepley   }
75369566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
75370fdc7489SMatthew Knepley   for (p = pStart; p < pEnd; ++p) {
75380fdc7489SMatthew Knepley     PetscInt  uval   = 0;
75390fdc7489SMatthew Knepley     PetscBool marked = PETSC_FALSE;
75400fdc7489SMatthew Knepley 
75410fdc7489SMatthew Knepley     for (l = 0, m = 0; l < Nl; ++l) {
75420fdc7489SMatthew Knepley       DMLabel  label;
75430649b39aSStefano Zampini       PetscInt val, defval, loc, nv;
75440fdc7489SMatthew Knepley 
75450fdc7489SMatthew Knepley       if (!active[l]) continue;
75469566063dSJacob Faibussowitsch       PetscCall(DMGetLabelByNum(dm, l, &label));
75479566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(label, p, &val));
75489566063dSJacob Faibussowitsch       PetscCall(DMLabelGetDefaultValue(label, &defval));
75499371c9d4SSatish Balay       if (val == defval) {
75509371c9d4SSatish Balay         ++m;
75519371c9d4SSatish Balay         continue;
75529371c9d4SSatish Balay       }
75530649b39aSStefano Zampini       nv     = ul->offsets[m + 1] - ul->offsets[m];
75540fdc7489SMatthew Knepley       marked = PETSC_TRUE;
75559566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(val, nv, &ul->values[ul->offsets[m]], &loc));
755663a3b9bcSJacob Faibussowitsch       PetscCheck(loc >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Label value %" PetscInt_FMT " not found in compression array", val);
75570fdc7489SMatthew Knepley       uval += (loc + 1) << ul->bits[m];
75580fdc7489SMatthew Knepley       ++m;
75590fdc7489SMatthew Knepley     }
75609566063dSJacob Faibussowitsch     if (marked) PetscCall(DMLabelSetValue(ul->label, p, uval));
75610fdc7489SMatthew Knepley   }
75629566063dSJacob Faibussowitsch   PetscCall(PetscFree(active));
75630fdc7489SMatthew Knepley   *universal = ul;
75640fdc7489SMatthew Knepley   PetscFunctionReturn(0);
75650fdc7489SMatthew Knepley }
75660fdc7489SMatthew Knepley 
7567d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelDestroy(DMUniversalLabel *universal)
7568d71ae5a4SJacob Faibussowitsch {
75690fdc7489SMatthew Knepley   PetscInt l;
75700fdc7489SMatthew Knepley 
75710fdc7489SMatthew Knepley   PetscFunctionBegin;
75729566063dSJacob Faibussowitsch   for (l = 0; l < (*universal)->Nl; ++l) PetscCall(PetscFree((*universal)->names[l]));
75739566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&(*universal)->label));
75749566063dSJacob Faibussowitsch   PetscCall(PetscFree5((*universal)->names, (*universal)->indices, (*universal)->offsets, (*universal)->bits, (*universal)->masks));
75759566063dSJacob Faibussowitsch   PetscCall(PetscFree((*universal)->values));
75769566063dSJacob Faibussowitsch   PetscCall(PetscFree(*universal));
75770fdc7489SMatthew Knepley   *universal = NULL;
75780fdc7489SMatthew Knepley   PetscFunctionReturn(0);
75790fdc7489SMatthew Knepley }
75800fdc7489SMatthew Knepley 
7581d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelGetLabel(DMUniversalLabel ul, DMLabel *ulabel)
7582d71ae5a4SJacob Faibussowitsch {
75830fdc7489SMatthew Knepley   PetscFunctionBegin;
75840fdc7489SMatthew Knepley   PetscValidPointer(ulabel, 2);
75850fdc7489SMatthew Knepley   *ulabel = ul->label;
75860fdc7489SMatthew Knepley   PetscFunctionReturn(0);
75870fdc7489SMatthew Knepley }
75880fdc7489SMatthew Knepley 
7589d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreateLabels(DMUniversalLabel ul, PetscBool preserveOrder, DM dm)
7590d71ae5a4SJacob Faibussowitsch {
75910fdc7489SMatthew Knepley   PetscInt Nl = ul->Nl, l;
75920fdc7489SMatthew Knepley 
75930fdc7489SMatthew Knepley   PetscFunctionBegin;
7594064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(dm, DM_CLASSID, 3);
75950fdc7489SMatthew Knepley   for (l = 0; l < Nl; ++l) {
75969566063dSJacob Faibussowitsch     if (preserveOrder) PetscCall(DMCreateLabelAtIndex(dm, ul->indices[l], ul->names[l]));
75979566063dSJacob Faibussowitsch     else PetscCall(DMCreateLabel(dm, ul->names[l]));
75980fdc7489SMatthew Knepley   }
75990fdc7489SMatthew Knepley   if (preserveOrder) {
76000fdc7489SMatthew Knepley     for (l = 0; l < ul->Nl; ++l) {
76010fdc7489SMatthew Knepley       const char *name;
76020fdc7489SMatthew Knepley       PetscBool   match;
76030fdc7489SMatthew Knepley 
76049566063dSJacob Faibussowitsch       PetscCall(DMGetLabelName(dm, ul->indices[l], &name));
76059566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, ul->names[l], &match));
760663a3b9bcSJacob Faibussowitsch       PetscCheck(match, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Label %" PetscInt_FMT " name %s does not match new name %s", l, name, ul->names[l]);
76070fdc7489SMatthew Knepley     }
76080fdc7489SMatthew Knepley   }
76090fdc7489SMatthew Knepley   PetscFunctionReturn(0);
76100fdc7489SMatthew Knepley }
76110fdc7489SMatthew Knepley 
7612d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelSetLabelValue(DMUniversalLabel ul, DM dm, PetscBool useIndex, PetscInt p, PetscInt value)
7613d71ae5a4SJacob Faibussowitsch {
76140fdc7489SMatthew Knepley   PetscInt l;
76150fdc7489SMatthew Knepley 
76160fdc7489SMatthew Knepley   PetscFunctionBegin;
76170fdc7489SMatthew Knepley   for (l = 0; l < ul->Nl; ++l) {
76180fdc7489SMatthew Knepley     DMLabel  label;
76190fdc7489SMatthew Knepley     PetscInt lval = (value & ul->masks[l]) >> ul->bits[l];
76200fdc7489SMatthew Knepley 
76210fdc7489SMatthew Knepley     if (lval) {
76229566063dSJacob Faibussowitsch       if (useIndex) PetscCall(DMGetLabelByNum(dm, ul->indices[l], &label));
76239566063dSJacob Faibussowitsch       else PetscCall(DMGetLabel(dm, ul->names[l], &label));
76249566063dSJacob Faibussowitsch       PetscCall(DMLabelSetValue(label, p, ul->values[ul->offsets[l] + lval - 1]));
76250fdc7489SMatthew Knepley     }
76260fdc7489SMatthew Knepley   }
76270fdc7489SMatthew Knepley   PetscFunctionReturn(0);
76280fdc7489SMatthew Knepley }
7629a8fb8f29SToby Isaac 
7630a8fb8f29SToby Isaac /*@
7631bb7acecfSBarry Smith   DMGetCoarseDM - Get the coarse `DM`from which this `DM` was obtained by refinement
7632bb7acecfSBarry Smith 
7633bb7acecfSBarry Smith   Not collective
7634a8fb8f29SToby Isaac 
7635a8fb8f29SToby Isaac   Input Parameter:
7636bb7acecfSBarry Smith . dm - The `DM` object
7637a8fb8f29SToby Isaac 
7638a8fb8f29SToby Isaac   Output Parameter:
7639bb7acecfSBarry Smith . cdm - The coarse `DM`
7640a8fb8f29SToby Isaac 
7641a8fb8f29SToby Isaac   Level: intermediate
7642a8fb8f29SToby Isaac 
7643bb7acecfSBarry Smith .seealso: `DMSetCoarseDM()`, `DMCoarsen()`
7644a8fb8f29SToby Isaac @*/
7645d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarseDM(DM dm, DM *cdm)
7646d71ae5a4SJacob Faibussowitsch {
7647a8fb8f29SToby Isaac   PetscFunctionBegin;
7648a8fb8f29SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7649a8fb8f29SToby Isaac   PetscValidPointer(cdm, 2);
7650a8fb8f29SToby Isaac   *cdm = dm->coarseMesh;
7651a8fb8f29SToby Isaac   PetscFunctionReturn(0);
7652a8fb8f29SToby Isaac }
7653a8fb8f29SToby Isaac 
7654a8fb8f29SToby Isaac /*@
7655bb7acecfSBarry Smith   DMSetCoarseDM - Set the coarse `DM` from which this `DM` was obtained by refinement
7656a8fb8f29SToby Isaac 
7657a8fb8f29SToby Isaac   Input Parameters:
7658bb7acecfSBarry Smith + dm - The `DM` object
7659bb7acecfSBarry Smith - cdm - The coarse `DM`
7660a8fb8f29SToby Isaac 
7661a8fb8f29SToby Isaac   Level: intermediate
7662a8fb8f29SToby Isaac 
7663bb7acecfSBarry Smith   Note:
7664bb7acecfSBarry Smith   Normally this is set automatically by `DMRefine()`
7665bb7acecfSBarry Smith 
7666bb7acecfSBarry Smith .seealso: `DMGetCoarseDM()`, `DMCoarsen()`, `DMSetRefine()`, `DMSetFineDM()`
7667a8fb8f29SToby Isaac @*/
7668d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarseDM(DM dm, DM cdm)
7669d71ae5a4SJacob Faibussowitsch {
7670a8fb8f29SToby Isaac   PetscFunctionBegin;
7671a8fb8f29SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7672a8fb8f29SToby Isaac   if (cdm) PetscValidHeaderSpecific(cdm, DM_CLASSID, 2);
767389d734beSBarry Smith   if (dm == cdm) cdm = NULL;
76749566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)cdm));
76759566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dm->coarseMesh));
7676a8fb8f29SToby Isaac   dm->coarseMesh = cdm;
7677a8fb8f29SToby Isaac   PetscFunctionReturn(0);
7678a8fb8f29SToby Isaac }
7679a8fb8f29SToby Isaac 
768088bdff64SToby Isaac /*@
7681bb7acecfSBarry Smith   DMGetFineDM - Get the fine mesh from which this `DM` was obtained by coarsening
768288bdff64SToby Isaac 
768388bdff64SToby Isaac   Input Parameter:
7684bb7acecfSBarry Smith . dm - The `DM` object
768588bdff64SToby Isaac 
768688bdff64SToby Isaac   Output Parameter:
7687bb7acecfSBarry Smith . fdm - The fine `DM`
768888bdff64SToby Isaac 
768988bdff64SToby Isaac   Level: intermediate
769088bdff64SToby Isaac 
7691bb7acecfSBarry Smith .seealso: `DMSetFineDM()`, `DMCoarsen()`, `DMRefine()`
769288bdff64SToby Isaac @*/
7693d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFineDM(DM dm, DM *fdm)
7694d71ae5a4SJacob Faibussowitsch {
769588bdff64SToby Isaac   PetscFunctionBegin;
769688bdff64SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
769788bdff64SToby Isaac   PetscValidPointer(fdm, 2);
769888bdff64SToby Isaac   *fdm = dm->fineMesh;
769988bdff64SToby Isaac   PetscFunctionReturn(0);
770088bdff64SToby Isaac }
770188bdff64SToby Isaac 
770288bdff64SToby Isaac /*@
7703bb7acecfSBarry Smith   DMSetFineDM - Set the fine mesh from which this was obtained by coarsening
770488bdff64SToby Isaac 
770588bdff64SToby Isaac   Input Parameters:
7706bb7acecfSBarry Smith + dm - The `DM` object
7707bb7acecfSBarry Smith - fdm - The fine `DM`
770888bdff64SToby Isaac 
7709bb7acecfSBarry Smith   Level: developer
771088bdff64SToby Isaac 
7711bb7acecfSBarry Smith   Note:
7712bb7acecfSBarry Smith   Normally this is set automatically by `DMCoarsen()`
7713bb7acecfSBarry Smith 
7714bb7acecfSBarry Smith .seealso: `DMGetFineDM()`, `DMCoarsen()`, `DMRefine()`
771588bdff64SToby Isaac @*/
7716d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFineDM(DM dm, DM fdm)
7717d71ae5a4SJacob Faibussowitsch {
771888bdff64SToby Isaac   PetscFunctionBegin;
771988bdff64SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
772088bdff64SToby Isaac   if (fdm) PetscValidHeaderSpecific(fdm, DM_CLASSID, 2);
772189d734beSBarry Smith   if (dm == fdm) fdm = NULL;
77229566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)fdm));
77239566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dm->fineMesh));
772488bdff64SToby Isaac   dm->fineMesh = fdm;
772588bdff64SToby Isaac   PetscFunctionReturn(0);
772688bdff64SToby Isaac }
772788bdff64SToby Isaac 
7728a6ba4734SToby Isaac /*@C
7729bb7acecfSBarry Smith   DMAddBoundary - Add a boundary condition to a model represented by a `DM`
7730a6ba4734SToby Isaac 
7731783e2ec8SMatthew G. Knepley   Collective on dm
7732783e2ec8SMatthew G. Knepley 
7733a6ba4734SToby Isaac   Input Parameters:
7734bb7acecfSBarry Smith + dm       - The `DM`, with a `PetscDS` that matches the problem being constrained
7735bb7acecfSBarry Smith . type     - The type of condition, e.g. `DM_BC_ESSENTIAL_ANALYTIC`, `DM_BC_ESSENTIAL_FIELD` (Dirichlet), or `DM_BC_NATURAL` (Neumann)
7736a6ba4734SToby Isaac . name     - The BC name
773745480ffeSMatthew G. Knepley . label    - The label defining constrained points
7738bb7acecfSBarry Smith . Nv       - The number of `DMLabel` values for constrained points
773945480ffeSMatthew G. Knepley . values   - An array of values for constrained points
7740a6ba4734SToby Isaac . field    - The field to constrain
774145480ffeSMatthew G. Knepley . Nc       - The number of constrained field components (0 will constrain all fields)
7742a6ba4734SToby Isaac . comps    - An array of constrained component numbers
7743a6ba4734SToby Isaac . bcFunc   - A pointwise function giving boundary values
774456cf3b9cSMatthew G. Knepley . bcFunc_t - A pointwise function giving the time deriative of the boundary values, or NULL
7745a6ba4734SToby Isaac - ctx      - An optional user context for bcFunc
7746a6ba4734SToby Isaac 
774745480ffeSMatthew G. Knepley   Output Parameter:
774845480ffeSMatthew G. Knepley . bd          - (Optional) Boundary number
774945480ffeSMatthew G. Knepley 
7750a6ba4734SToby Isaac   Options Database Keys:
7751a6ba4734SToby Isaac + -bc_<boundary name> <num> - Overrides the boundary ids
7752a6ba4734SToby Isaac - -bc_<boundary name>_comp <num> - Overrides the boundary components
7753a6ba4734SToby Isaac 
7754bb7acecfSBarry Smith   Notes:
7755bb7acecfSBarry Smith   Both bcFunc abd bcFunc_t will depend on the boundary condition type. If the type if `DM_BC_ESSENTIAL`, then the calling sequence is:
775656cf3b9cSMatthew G. Knepley 
775756cf3b9cSMatthew G. Knepley $ bcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[])
775856cf3b9cSMatthew G. Knepley 
7759bb7acecfSBarry Smith   If the type is `DM_BC_ESSENTIAL_FIELD` or other _FIELD value, then the calling sequence is:
776056cf3b9cSMatthew G. Knepley 
776156cf3b9cSMatthew G. Knepley $ bcFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux,
776256cf3b9cSMatthew G. Knepley $        const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
776356cf3b9cSMatthew G. Knepley $        const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
776456cf3b9cSMatthew G. Knepley $        PetscReal time, const PetscReal x[], PetscScalar bcval[])
776556cf3b9cSMatthew G. Knepley 
776656cf3b9cSMatthew G. Knepley + dim - the spatial dimension
776756cf3b9cSMatthew G. Knepley . Nf - the number of fields
776856cf3b9cSMatthew G. Knepley . uOff - the offset into u[] and u_t[] for each field
776956cf3b9cSMatthew G. Knepley . uOff_x - the offset into u_x[] for each field
777056cf3b9cSMatthew G. Knepley . u - each field evaluated at the current point
777156cf3b9cSMatthew G. Knepley . u_t - the time derivative of each field evaluated at the current point
777256cf3b9cSMatthew G. Knepley . u_x - the gradient of each field evaluated at the current point
777356cf3b9cSMatthew G. Knepley . aOff - the offset into a[] and a_t[] for each auxiliary field
777456cf3b9cSMatthew G. Knepley . aOff_x - the offset into a_x[] for each auxiliary field
777556cf3b9cSMatthew G. Knepley . a - each auxiliary field evaluated at the current point
777656cf3b9cSMatthew G. Knepley . a_t - the time derivative of each auxiliary field evaluated at the current point
777756cf3b9cSMatthew G. Knepley . a_x - the gradient of auxiliary each field evaluated at the current point
777856cf3b9cSMatthew G. Knepley . t - current time
777956cf3b9cSMatthew G. Knepley . x - coordinates of the current point
778056cf3b9cSMatthew G. Knepley . numConstants - number of constant parameters
778156cf3b9cSMatthew G. Knepley . constants - constant parameters
778256cf3b9cSMatthew G. Knepley - bcval - output values at the current point
778356cf3b9cSMatthew G. Knepley 
7784ed808b8fSJed Brown   Level: intermediate
7785a6ba4734SToby Isaac 
7786db781477SPatrick Sanan .seealso: `DSGetBoundary()`, `PetscDSAddBoundary()`
7787a6ba4734SToby Isaac @*/
7788d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddBoundary(DM dm, DMBoundaryConditionType type, const char name[], DMLabel label, PetscInt Nv, const PetscInt values[], PetscInt field, PetscInt Nc, const PetscInt comps[], void (*bcFunc)(void), void (*bcFunc_t)(void), void *ctx, PetscInt *bd)
7789d71ae5a4SJacob Faibussowitsch {
7790e5e52638SMatthew G. Knepley   PetscDS ds;
7791a6ba4734SToby Isaac 
7792a6ba4734SToby Isaac   PetscFunctionBegin;
7793a6ba4734SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7794783e2ec8SMatthew G. Knepley   PetscValidLogicalCollectiveEnum(dm, type, 2);
779545480ffeSMatthew G. Knepley   PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 4);
779645480ffeSMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, Nv, 5);
779745480ffeSMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, field, 7);
779845480ffeSMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, Nc, 8);
779901a5d20dSJed Brown   PetscCheck(!dm->localSection, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot add boundary to DM after creating local section");
78009566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &ds));
7801799db056SMatthew G. Knepley   /* Complete label */
7802799db056SMatthew G. Knepley   if (label) {
7803799db056SMatthew G. Knepley     PetscObject  obj;
7804799db056SMatthew G. Knepley     PetscClassId id;
7805799db056SMatthew G. Knepley 
7806799db056SMatthew G. Knepley     PetscCall(DMGetField(dm, field, NULL, &obj));
7807799db056SMatthew G. Knepley     PetscCall(PetscObjectGetClassId(obj, &id));
7808799db056SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
7809799db056SMatthew G. Knepley       DM plex;
7810799db056SMatthew G. Knepley 
7811799db056SMatthew G. Knepley       PetscCall(DMConvert(dm, DMPLEX, &plex));
7812799db056SMatthew G. Knepley       if (plex) PetscCall(DMPlexLabelComplete(plex, label));
7813799db056SMatthew G. Knepley       PetscCall(DMDestroy(&plex));
7814799db056SMatthew G. Knepley     }
7815799db056SMatthew G. Knepley   }
78169566063dSJacob Faibussowitsch   PetscCall(PetscDSAddBoundary(ds, type, name, label, Nv, values, field, Nc, comps, bcFunc, bcFunc_t, ctx, bd));
7817a6ba4734SToby Isaac   PetscFunctionReturn(0);
7818a6ba4734SToby Isaac }
7819a6ba4734SToby Isaac 
782045480ffeSMatthew G. Knepley /* TODO Remove this since now the structures are the same */
7821d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPopulateBoundary(DM dm)
7822d71ae5a4SJacob Faibussowitsch {
7823e5e52638SMatthew G. Knepley   PetscDS     ds;
7824dff059c6SToby Isaac   DMBoundary *lastnext;
7825e6f8dbb6SToby Isaac   DSBoundary  dsbound;
7826e6f8dbb6SToby Isaac 
7827e6f8dbb6SToby Isaac   PetscFunctionBegin;
78289566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &ds));
7829e5e52638SMatthew G. Knepley   dsbound = ds->boundary;
783047a1f5adSToby Isaac   if (dm->boundary) {
783147a1f5adSToby Isaac     DMBoundary next = dm->boundary;
783247a1f5adSToby Isaac 
783347a1f5adSToby Isaac     /* quick check to see if the PetscDS has changed */
783447a1f5adSToby Isaac     if (next->dsboundary == dsbound) PetscFunctionReturn(0);
783547a1f5adSToby Isaac     /* the PetscDS has changed: tear down and rebuild */
783647a1f5adSToby Isaac     while (next) {
783747a1f5adSToby Isaac       DMBoundary b = next;
783847a1f5adSToby Isaac 
783947a1f5adSToby Isaac       next = b->next;
78409566063dSJacob Faibussowitsch       PetscCall(PetscFree(b));
7841a6ba4734SToby Isaac     }
784247a1f5adSToby Isaac     dm->boundary = NULL;
7843a6ba4734SToby Isaac   }
784447a1f5adSToby Isaac 
7845dff059c6SToby Isaac   lastnext = &(dm->boundary);
7846e6f8dbb6SToby Isaac   while (dsbound) {
7847e6f8dbb6SToby Isaac     DMBoundary dmbound;
7848e6f8dbb6SToby Isaac 
78499566063dSJacob Faibussowitsch     PetscCall(PetscNew(&dmbound));
7850e6f8dbb6SToby Isaac     dmbound->dsboundary = dsbound;
785145480ffeSMatthew G. Knepley     dmbound->label      = dsbound->label;
785247a1f5adSToby Isaac     /* push on the back instead of the front so that it is in the same order as in the PetscDS */
7853dff059c6SToby Isaac     *lastnext = dmbound;
7854dff059c6SToby Isaac     lastnext  = &(dmbound->next);
7855dff059c6SToby Isaac     dsbound   = dsbound->next;
7856a6ba4734SToby Isaac   }
7857a6ba4734SToby Isaac   PetscFunctionReturn(0);
7858a6ba4734SToby Isaac }
7859a6ba4734SToby Isaac 
7860bb7acecfSBarry Smith /* TODO: missing manual page */
7861d71ae5a4SJacob Faibussowitsch PetscErrorCode DMIsBoundaryPoint(DM dm, PetscInt point, PetscBool *isBd)
7862d71ae5a4SJacob Faibussowitsch {
7863b95f2879SToby Isaac   DMBoundary b;
7864a6ba4734SToby Isaac 
7865a6ba4734SToby Isaac   PetscFunctionBegin;
7866a6ba4734SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7867534a8f05SLisandro Dalcin   PetscValidBoolPointer(isBd, 3);
7868a6ba4734SToby Isaac   *isBd = PETSC_FALSE;
78699566063dSJacob Faibussowitsch   PetscCall(DMPopulateBoundary(dm));
7870b95f2879SToby Isaac   b = dm->boundary;
7871a6ba4734SToby Isaac   while (b && !(*isBd)) {
7872e6f8dbb6SToby Isaac     DMLabel    label = b->label;
7873e6f8dbb6SToby Isaac     DSBoundary dsb   = b->dsboundary;
7874a6ba4734SToby Isaac     PetscInt   i;
7875a6ba4734SToby Isaac 
787645480ffeSMatthew G. Knepley     if (label) {
78779566063dSJacob Faibussowitsch       for (i = 0; i < dsb->Nv && !(*isBd); ++i) PetscCall(DMLabelStratumHasPoint(label, dsb->values[i], point, isBd));
7878a6ba4734SToby Isaac     }
7879a6ba4734SToby Isaac     b = b->next;
7880a6ba4734SToby Isaac   }
7881a6ba4734SToby Isaac   PetscFunctionReturn(0);
7882a6ba4734SToby Isaac }
78834d6f44ffSToby Isaac 
78844d6f44ffSToby Isaac /*@C
7885bb7acecfSBarry Smith   DMProjectFunction - This projects the given function into the function space provided by a `DM`, putting the coefficients in a global vector.
7886a6e0b375SMatthew G. Knepley 
7887bb7acecfSBarry Smith   Collective on dm
78884d6f44ffSToby Isaac 
78894d6f44ffSToby Isaac   Input Parameters:
7890bb7acecfSBarry Smith + dm      - The `DM`
78910709b2feSToby Isaac . time    - The time
78924d6f44ffSToby Isaac . funcs   - The coordinate functions to evaluate, one per field
78934d6f44ffSToby Isaac . ctxs    - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
78944d6f44ffSToby Isaac - mode    - The insertion mode for values
78954d6f44ffSToby Isaac 
78964d6f44ffSToby Isaac   Output Parameter:
78974d6f44ffSToby Isaac . X - vector
78984d6f44ffSToby Isaac 
78994d6f44ffSToby Isaac    Calling sequence of func:
790077b739a6SMatthew Knepley $    func(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx);
79014d6f44ffSToby Isaac 
79024d6f44ffSToby Isaac +  dim - The spatial dimension
79038ec8862eSJed Brown .  time - The time at which to sample
79044d6f44ffSToby Isaac .  x   - The coordinates
790577b739a6SMatthew Knepley .  Nc  - The number of components
79064d6f44ffSToby Isaac .  u   - The output field values
79074d6f44ffSToby Isaac -  ctx - optional user-defined function context
79084d6f44ffSToby Isaac 
79094d6f44ffSToby Isaac   Level: developer
79104d6f44ffSToby Isaac 
7911bb7acecfSBarry Smith   Developer Notes:
7912bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
7913bb7acecfSBarry Smith 
7914bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
7915bb7acecfSBarry Smith 
7916db781477SPatrick Sanan .seealso: `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
79174d6f44ffSToby Isaac @*/
7918d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFunction(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec X)
7919d71ae5a4SJacob Faibussowitsch {
79204d6f44ffSToby Isaac   Vec localX;
79214d6f44ffSToby Isaac 
79224d6f44ffSToby Isaac   PetscFunctionBegin;
79234d6f44ffSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
79249566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
79259566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, mode, localX));
79269566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
79279566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
79289566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
79294d6f44ffSToby Isaac   PetscFunctionReturn(0);
79304d6f44ffSToby Isaac }
79314d6f44ffSToby Isaac 
7932a6e0b375SMatthew G. Knepley /*@C
7933bb7acecfSBarry Smith   DMProjectFunctionLocal - This projects the given function into the function space provided by a `DM`, putting the coefficients in a local vector.
7934a6e0b375SMatthew G. Knepley 
7935a6e0b375SMatthew G. Knepley   Not collective
7936a6e0b375SMatthew G. Knepley 
7937a6e0b375SMatthew G. Knepley   Input Parameters:
7938bb7acecfSBarry Smith + dm      - The `DM`
7939a6e0b375SMatthew G. Knepley . time    - The time
7940a6e0b375SMatthew G. Knepley . funcs   - The coordinate functions to evaluate, one per field
7941a6e0b375SMatthew G. Knepley . ctxs    - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
7942a6e0b375SMatthew G. Knepley - mode    - The insertion mode for values
7943a6e0b375SMatthew G. Knepley 
7944a6e0b375SMatthew G. Knepley   Output Parameter:
7945a6e0b375SMatthew G. Knepley . localX - vector
7946a6e0b375SMatthew G. Knepley 
7947a6e0b375SMatthew G. Knepley    Calling sequence of func:
794877b739a6SMatthew Knepley $    func(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx);
7949a6e0b375SMatthew G. Knepley 
7950a6e0b375SMatthew G. Knepley +  dim - The spatial dimension
7951a6e0b375SMatthew G. Knepley .  x   - The coordinates
795277b739a6SMatthew Knepley .  Nc  - The number of components
7953a6e0b375SMatthew G. Knepley .  u   - The output field values
7954a6e0b375SMatthew G. Knepley -  ctx - optional user-defined function context
7955a6e0b375SMatthew G. Knepley 
7956a6e0b375SMatthew G. Knepley   Level: developer
7957a6e0b375SMatthew G. Knepley 
7958bb7acecfSBarry Smith   Developer Notes:
7959bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
7960bb7acecfSBarry Smith 
7961bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
7962bb7acecfSBarry Smith 
7963db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
7964a6e0b375SMatthew G. Knepley @*/
7965d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec localX)
7966d71ae5a4SJacob Faibussowitsch {
79674d6f44ffSToby Isaac   PetscFunctionBegin;
79684d6f44ffSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7969064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 6);
79709566063dSJacob Faibussowitsch   PetscCall((dm->ops->projectfunctionlocal)(dm, time, funcs, ctxs, mode, localX));
79714d6f44ffSToby Isaac   PetscFunctionReturn(0);
79724d6f44ffSToby Isaac }
79734d6f44ffSToby Isaac 
7974a6e0b375SMatthew G. Knepley /*@C
7975bb7acecfSBarry Smith   DMProjectFunctionLabel - This projects the given function into the function space provided by the `DM`, putting the coefficients in a global vector, setting values only for points in the given label.
7976a6e0b375SMatthew G. Knepley 
7977bb7acecfSBarry Smith   Collective on dm
7978a6e0b375SMatthew G. Knepley 
7979a6e0b375SMatthew G. Knepley   Input Parameters:
7980bb7acecfSBarry Smith + dm      - The `DM`
7981a6e0b375SMatthew G. Knepley . time    - The time
7982bb7acecfSBarry Smith . label   - The `DMLabel` selecting the portion of the mesh for projection
7983a6e0b375SMatthew G. Knepley . funcs   - The coordinate functions to evaluate, one per field
7984bb7acecfSBarry Smith . ctxs    - Optional array of contexts to pass to each coordinate function.  ctxs may be null.
7985a6e0b375SMatthew G. Knepley - mode    - The insertion mode for values
7986a6e0b375SMatthew G. Knepley 
7987a6e0b375SMatthew G. Knepley   Output Parameter:
7988a6e0b375SMatthew G. Knepley . X - vector
7989a6e0b375SMatthew G. Knepley 
7990a6e0b375SMatthew G. Knepley    Calling sequence of func:
799177b739a6SMatthew Knepley $    func(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx);
7992a6e0b375SMatthew G. Knepley 
7993a6e0b375SMatthew G. Knepley +  dim - The spatial dimension
7994a6e0b375SMatthew G. Knepley .  x   - The coordinates
799577b739a6SMatthew Knepley .  Nc  - The number of components
7996a6e0b375SMatthew G. Knepley .  u   - The output field values
7997a6e0b375SMatthew G. Knepley -  ctx - optional user-defined function context
7998a6e0b375SMatthew G. Knepley 
7999a6e0b375SMatthew G. Knepley   Level: developer
8000a6e0b375SMatthew G. Knepley 
8001bb7acecfSBarry Smith   Developer Notes:
8002bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8003bb7acecfSBarry Smith 
8004bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8005bb7acecfSBarry Smith 
8006db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`, `DMComputeL2Diff()`
8007a6e0b375SMatthew G. Knepley @*/
8008d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec X)
8009d71ae5a4SJacob Faibussowitsch {
80102c53366bSMatthew G. Knepley   Vec localX;
80112c53366bSMatthew G. Knepley 
80122c53366bSMatthew G. Knepley   PetscFunctionBegin;
80132c53366bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
80149566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
80159566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX));
80169566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
80179566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
80189566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
80192c53366bSMatthew G. Knepley   PetscFunctionReturn(0);
80202c53366bSMatthew G. Knepley }
80212c53366bSMatthew G. Knepley 
8022a6e0b375SMatthew G. Knepley /*@C
8023bb7acecfSBarry Smith   DMProjectFunctionLabelLocal - This projects the given function into the function space provided by the `DM`, putting the coefficients in a local vector, setting values only for points in the given label.
8024a6e0b375SMatthew G. Knepley 
8025a6e0b375SMatthew G. Knepley   Not collective
8026a6e0b375SMatthew G. Knepley 
8027a6e0b375SMatthew G. Knepley   Input Parameters:
8028bb7acecfSBarry Smith + dm      - The `DM`
8029a6e0b375SMatthew G. Knepley . time    - The time
8030bb7acecfSBarry Smith . label   - The `DMLabel` selecting the portion of the mesh for projection
8031a6e0b375SMatthew G. Knepley . funcs   - The coordinate functions to evaluate, one per field
8032a6e0b375SMatthew G. Knepley . ctxs    - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
8033a6e0b375SMatthew G. Knepley - mode    - The insertion mode for values
8034a6e0b375SMatthew G. Knepley 
8035a6e0b375SMatthew G. Knepley   Output Parameter:
8036a6e0b375SMatthew G. Knepley . localX - vector
8037a6e0b375SMatthew G. Knepley 
8038a6e0b375SMatthew G. Knepley    Calling sequence of func:
803977b739a6SMatthew Knepley $    func(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx);
8040a6e0b375SMatthew G. Knepley 
8041a6e0b375SMatthew G. Knepley +  dim - The spatial dimension
8042a6e0b375SMatthew G. Knepley .  x   - The coordinates
804377b739a6SMatthew Knepley .  Nc  - The number of components
8044a6e0b375SMatthew G. Knepley .  u   - The output field values
8045a6e0b375SMatthew G. Knepley -  ctx - optional user-defined function context
8046a6e0b375SMatthew G. Knepley 
8047a6e0b375SMatthew G. Knepley   Level: developer
8048a6e0b375SMatthew G. Knepley 
8049bb7acecfSBarry Smith   Developer Notes:
8050bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8051bb7acecfSBarry Smith 
8052bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8053bb7acecfSBarry Smith 
8054db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
8055a6e0b375SMatthew G. Knepley @*/
8056d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec localX)
8057d71ae5a4SJacob Faibussowitsch {
80584d6f44ffSToby Isaac   PetscFunctionBegin;
80594d6f44ffSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8060064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
80619566063dSJacob Faibussowitsch   PetscCall((dm->ops->projectfunctionlabellocal)(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX));
80624d6f44ffSToby Isaac   PetscFunctionReturn(0);
80634d6f44ffSToby Isaac }
80642716604bSToby Isaac 
8065a6e0b375SMatthew G. Knepley /*@C
8066bb7acecfSBarry Smith   DMProjectFieldLocal - This projects the given function of the input fields into the function space provided by the `DM`, putting the coefficients in a local vector.
8067a6e0b375SMatthew G. Knepley 
8068a6e0b375SMatthew G. Knepley   Not collective
8069a6e0b375SMatthew G. Knepley 
8070a6e0b375SMatthew G. Knepley   Input Parameters:
8071bb7acecfSBarry Smith + dm      - The `DM`
8072a6e0b375SMatthew G. Knepley . time    - The time
8073a6e0b375SMatthew G. Knepley . localU  - The input field vector
8074a6e0b375SMatthew G. Knepley . funcs   - The functions to evaluate, one per field
8075a6e0b375SMatthew G. Knepley - mode    - The insertion mode for values
8076a6e0b375SMatthew G. Knepley 
8077a6e0b375SMatthew G. Knepley   Output Parameter:
8078a6e0b375SMatthew G. Knepley . localX  - The output vector
8079a6e0b375SMatthew G. Knepley 
8080a6e0b375SMatthew G. Knepley    Calling sequence of func:
8081a6e0b375SMatthew G. Knepley $    func(PetscInt dim, PetscInt Nf, PetscInt NfAux,
8082a6e0b375SMatthew G. Knepley $         const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
8083a6e0b375SMatthew G. Knepley $         const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
8084a6e0b375SMatthew G. Knepley $         PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]);
8085a6e0b375SMatthew G. Knepley 
8086a6e0b375SMatthew G. Knepley +  dim          - The spatial dimension
8087a6e0b375SMatthew G. Knepley .  Nf           - The number of input fields
8088a6e0b375SMatthew G. Knepley .  NfAux        - The number of input auxiliary fields
8089a6e0b375SMatthew G. Knepley .  uOff         - The offset of each field in u[]
8090a6e0b375SMatthew G. Knepley .  uOff_x       - The offset of each field in u_x[]
8091a6e0b375SMatthew G. Knepley .  u            - The field values at this point in space
8092a6e0b375SMatthew G. Knepley .  u_t          - The field time derivative at this point in space (or NULL)
8093a6e0b375SMatthew G. Knepley .  u_x          - The field derivatives at this point in space
8094a6e0b375SMatthew G. Knepley .  aOff         - The offset of each auxiliary field in u[]
8095a6e0b375SMatthew G. Knepley .  aOff_x       - The offset of each auxiliary field in u_x[]
8096a6e0b375SMatthew G. Knepley .  a            - The auxiliary field values at this point in space
8097a6e0b375SMatthew G. Knepley .  a_t          - The auxiliary field time derivative at this point in space (or NULL)
8098a6e0b375SMatthew G. Knepley .  a_x          - The auxiliary field derivatives at this point in space
8099a6e0b375SMatthew G. Knepley .  t            - The current time
8100a6e0b375SMatthew G. Knepley .  x            - The coordinates of this point
8101a6e0b375SMatthew G. Knepley .  numConstants - The number of constants
8102a6e0b375SMatthew G. Knepley .  constants    - The value of each constant
8103a6e0b375SMatthew G. Knepley -  f            - The value of the function at this point in space
8104a6e0b375SMatthew G. Knepley 
8105bb7acecfSBarry Smith   Note:
8106bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8107bb7acecfSBarry Smith   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8108bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8109a6e0b375SMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8110a6e0b375SMatthew G. Knepley 
8111a6e0b375SMatthew G. Knepley   Level: intermediate
8112a6e0b375SMatthew G. Knepley 
8113bb7acecfSBarry Smith   Developer Notes:
8114bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8115bb7acecfSBarry Smith 
8116bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8117bb7acecfSBarry Smith 
8118db781477SPatrick Sanan .seealso: `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8119a6e0b375SMatthew G. Knepley @*/
8120d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFieldLocal(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), InsertMode mode, Vec localX)
8121d71ae5a4SJacob Faibussowitsch {
81228c6c5593SMatthew G. Knepley   PetscFunctionBegin;
81238c6c5593SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
81248c6c5593SMatthew G. Knepley   PetscValidHeaderSpecific(localU, VEC_CLASSID, 3);
81258c6c5593SMatthew G. Knepley   PetscValidHeaderSpecific(localX, VEC_CLASSID, 6);
81269566063dSJacob Faibussowitsch   PetscCall((dm->ops->projectfieldlocal)(dm, time, localU, funcs, mode, localX));
81278c6c5593SMatthew G. Knepley   PetscFunctionReturn(0);
81288c6c5593SMatthew G. Knepley }
81298c6c5593SMatthew G. Knepley 
8130a6e0b375SMatthew G. Knepley /*@C
8131a6e0b375SMatthew G. Knepley   DMProjectFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain specified by the label.
8132a6e0b375SMatthew G. Knepley 
8133a6e0b375SMatthew G. Knepley   Not collective
8134a6e0b375SMatthew G. Knepley 
8135a6e0b375SMatthew G. Knepley   Input Parameters:
8136bb7acecfSBarry Smith + dm      - The `DM`
8137a6e0b375SMatthew G. Knepley . time    - The time
8138bb7acecfSBarry Smith . label   - The `DMLabel` marking the portion of the domain to output
8139a6e0b375SMatthew G. Knepley . numIds  - The number of label ids to use
8140a6e0b375SMatthew G. Knepley . ids     - The label ids to use for marking
8141bb7acecfSBarry Smith . Nc      - The number of components to set in the output, or `PETSC_DETERMINE` for all components
8142a6e0b375SMatthew G. Knepley . comps   - The components to set in the output, or NULL for all components
8143a6e0b375SMatthew G. Knepley . localU  - The input field vector
8144a6e0b375SMatthew G. Knepley . funcs   - The functions to evaluate, one per field
8145a6e0b375SMatthew G. Knepley - mode    - The insertion mode for values
8146a6e0b375SMatthew G. Knepley 
8147a6e0b375SMatthew G. Knepley   Output Parameter:
8148a6e0b375SMatthew G. Knepley . localX  - The output vector
8149a6e0b375SMatthew G. Knepley 
8150a6e0b375SMatthew G. Knepley    Calling sequence of func:
8151a6e0b375SMatthew G. Knepley $    func(PetscInt dim, PetscInt Nf, PetscInt NfAux,
8152a6e0b375SMatthew G. Knepley $         const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
8153a6e0b375SMatthew G. Knepley $         const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
8154a6e0b375SMatthew G. Knepley $         PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]);
8155a6e0b375SMatthew G. Knepley 
8156a6e0b375SMatthew G. Knepley +  dim          - The spatial dimension
8157a6e0b375SMatthew G. Knepley .  Nf           - The number of input fields
8158a6e0b375SMatthew G. Knepley .  NfAux        - The number of input auxiliary fields
8159a6e0b375SMatthew G. Knepley .  uOff         - The offset of each field in u[]
8160a6e0b375SMatthew G. Knepley .  uOff_x       - The offset of each field in u_x[]
8161a6e0b375SMatthew G. Knepley .  u            - The field values at this point in space
8162a6e0b375SMatthew G. Knepley .  u_t          - The field time derivative at this point in space (or NULL)
8163a6e0b375SMatthew G. Knepley .  u_x          - The field derivatives at this point in space
8164a6e0b375SMatthew G. Knepley .  aOff         - The offset of each auxiliary field in u[]
8165a6e0b375SMatthew G. Knepley .  aOff_x       - The offset of each auxiliary field in u_x[]
8166a6e0b375SMatthew G. Knepley .  a            - The auxiliary field values at this point in space
8167a6e0b375SMatthew G. Knepley .  a_t          - The auxiliary field time derivative at this point in space (or NULL)
8168a6e0b375SMatthew G. Knepley .  a_x          - The auxiliary field derivatives at this point in space
8169a6e0b375SMatthew G. Knepley .  t            - The current time
8170a6e0b375SMatthew G. Knepley .  x            - The coordinates of this point
8171a6e0b375SMatthew G. Knepley .  numConstants - The number of constants
8172a6e0b375SMatthew G. Knepley .  constants    - The value of each constant
8173a6e0b375SMatthew G. Knepley -  f            - The value of the function at this point in space
8174a6e0b375SMatthew G. Knepley 
8175bb7acecfSBarry Smith   Note:
8176bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8177bb7acecfSBarry Smith   The input `DM`, attached to localU, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8178bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8179a6e0b375SMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8180a6e0b375SMatthew G. Knepley 
8181a6e0b375SMatthew G. Knepley   Level: intermediate
8182a6e0b375SMatthew G. Knepley 
8183bb7acecfSBarry Smith   Developer Notes:
8184bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8185bb7acecfSBarry Smith 
8186bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8187bb7acecfSBarry Smith 
8188d29d7c6eSMatthew G. Knepley .seealso: `DMProjectField()`, `DMProjectFieldLabel()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8189a6e0b375SMatthew G. Knepley @*/
8190d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), InsertMode mode, Vec localX)
8191d71ae5a4SJacob Faibussowitsch {
81928c6c5593SMatthew G. Knepley   PetscFunctionBegin;
81938c6c5593SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8194064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localU, VEC_CLASSID, 8);
8195064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
81969566063dSJacob Faibussowitsch   PetscCall((dm->ops->projectfieldlabellocal)(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX));
81978c6c5593SMatthew G. Knepley   PetscFunctionReturn(0);
81988c6c5593SMatthew G. Knepley }
81998c6c5593SMatthew G. Knepley 
82002716604bSToby Isaac /*@C
8201d29d7c6eSMatthew G. Knepley   DMProjectFieldLabel - This projects the given function of the input fields into the function space provided, putting the coefficients in a global vector, calculating only over the portion of the domain specified by the label.
8202d29d7c6eSMatthew G. Knepley 
8203d29d7c6eSMatthew G. Knepley   Not collective
8204d29d7c6eSMatthew G. Knepley 
8205d29d7c6eSMatthew G. Knepley   Input Parameters:
8206bb7acecfSBarry Smith + dm      - The `DM`
8207d29d7c6eSMatthew G. Knepley . time    - The time
8208bb7acecfSBarry Smith . label   - The `DMLabel` marking the portion of the domain to output
8209d29d7c6eSMatthew G. Knepley . numIds  - The number of label ids to use
8210d29d7c6eSMatthew G. Knepley . ids     - The label ids to use for marking
8211bb7acecfSBarry Smith . Nc      - The number of components to set in the output, or `PETSC_DETERMINE` for all components
8212d29d7c6eSMatthew G. Knepley . comps   - The components to set in the output, or NULL for all components
8213d29d7c6eSMatthew G. Knepley . U       - The input field vector
8214d29d7c6eSMatthew G. Knepley . funcs   - The functions to evaluate, one per field
8215d29d7c6eSMatthew G. Knepley - mode    - The insertion mode for values
8216d29d7c6eSMatthew G. Knepley 
8217d29d7c6eSMatthew G. Knepley   Output Parameter:
8218d29d7c6eSMatthew G. Knepley . X       - The output vector
8219d29d7c6eSMatthew G. Knepley 
8220d29d7c6eSMatthew G. Knepley    Calling sequence of func:
8221d29d7c6eSMatthew G. Knepley $    func(PetscInt dim, PetscInt Nf, PetscInt NfAux,
8222d29d7c6eSMatthew G. Knepley $         const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
8223d29d7c6eSMatthew G. Knepley $         const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
8224d29d7c6eSMatthew G. Knepley $         PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]);
8225d29d7c6eSMatthew G. Knepley 
8226d29d7c6eSMatthew G. Knepley +  dim          - The spatial dimension
8227d29d7c6eSMatthew G. Knepley .  Nf           - The number of input fields
8228d29d7c6eSMatthew G. Knepley .  NfAux        - The number of input auxiliary fields
8229d29d7c6eSMatthew G. Knepley .  uOff         - The offset of each field in u[]
8230d29d7c6eSMatthew G. Knepley .  uOff_x       - The offset of each field in u_x[]
8231d29d7c6eSMatthew G. Knepley .  u            - The field values at this point in space
8232d29d7c6eSMatthew G. Knepley .  u_t          - The field time derivative at this point in space (or NULL)
8233d29d7c6eSMatthew G. Knepley .  u_x          - The field derivatives at this point in space
8234d29d7c6eSMatthew G. Knepley .  aOff         - The offset of each auxiliary field in u[]
8235d29d7c6eSMatthew G. Knepley .  aOff_x       - The offset of each auxiliary field in u_x[]
8236d29d7c6eSMatthew G. Knepley .  a            - The auxiliary field values at this point in space
8237d29d7c6eSMatthew G. Knepley .  a_t          - The auxiliary field time derivative at this point in space (or NULL)
8238d29d7c6eSMatthew G. Knepley .  a_x          - The auxiliary field derivatives at this point in space
8239d29d7c6eSMatthew G. Knepley .  t            - The current time
8240d29d7c6eSMatthew G. Knepley .  x            - The coordinates of this point
8241d29d7c6eSMatthew G. Knepley .  numConstants - The number of constants
8242d29d7c6eSMatthew G. Knepley .  constants    - The value of each constant
8243d29d7c6eSMatthew G. Knepley -  f            - The value of the function at this point in space
8244d29d7c6eSMatthew G. Knepley 
8245bb7acecfSBarry Smith   Note:
8246bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8247bb7acecfSBarry Smith   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8248bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8249d29d7c6eSMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8250d29d7c6eSMatthew G. Knepley 
8251d29d7c6eSMatthew G. Knepley   Level: intermediate
8252d29d7c6eSMatthew G. Knepley 
8253bb7acecfSBarry Smith   Developer Notes:
8254bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8255bb7acecfSBarry Smith 
8256bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8257bb7acecfSBarry Smith 
8258d29d7c6eSMatthew G. Knepley .seealso: `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8259d29d7c6eSMatthew G. Knepley @*/
8260d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec U, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), InsertMode mode, Vec X)
8261d71ae5a4SJacob Faibussowitsch {
8262d29d7c6eSMatthew G. Knepley   DM  dmIn;
8263d29d7c6eSMatthew G. Knepley   Vec localU, localX;
8264d29d7c6eSMatthew G. Knepley 
8265d29d7c6eSMatthew G. Knepley   PetscFunctionBegin;
8266d29d7c6eSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8267d29d7c6eSMatthew G. Knepley   PetscCall(VecGetDM(U, &dmIn));
8268d29d7c6eSMatthew G. Knepley   PetscCall(DMGetLocalVector(dmIn, &localU));
8269d29d7c6eSMatthew G. Knepley   PetscCall(DMGetLocalVector(dm, &localX));
827072fc1ce5SMatthew G. Knepley   PetscCall(DMGlobalToLocalBegin(dmIn, U, mode, localU));
827172fc1ce5SMatthew G. Knepley   PetscCall(DMGlobalToLocalEnd(dmIn, U, mode, localU));
8272d29d7c6eSMatthew G. Knepley   PetscCall(DMProjectFieldLabelLocal(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX));
8273d29d7c6eSMatthew G. Knepley   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
8274d29d7c6eSMatthew G. Knepley   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
8275d29d7c6eSMatthew G. Knepley   PetscCall(DMRestoreLocalVector(dm, &localX));
8276d29d7c6eSMatthew G. Knepley   PetscCall(DMRestoreLocalVector(dmIn, &localU));
8277d29d7c6eSMatthew G. Knepley   PetscFunctionReturn(0);
8278d29d7c6eSMatthew G. Knepley }
8279d29d7c6eSMatthew G. Knepley 
8280d29d7c6eSMatthew G. Knepley /*@C
8281ece3a9fcSMatthew G. Knepley   DMProjectBdFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain boundary specified by the label.
8282ece3a9fcSMatthew G. Knepley 
8283ece3a9fcSMatthew G. Knepley   Not collective
8284ece3a9fcSMatthew G. Knepley 
8285ece3a9fcSMatthew G. Knepley   Input Parameters:
8286bb7acecfSBarry Smith + dm      - The `DM`
8287ece3a9fcSMatthew G. Knepley . time    - The time
8288bb7acecfSBarry Smith . label   - The `DMLabel` marking the portion of the domain boundary to output
8289ece3a9fcSMatthew G. Knepley . numIds  - The number of label ids to use
8290ece3a9fcSMatthew G. Knepley . ids     - The label ids to use for marking
8291bb7acecfSBarry Smith . Nc      - The number of components to set in the output, or `PETSC_DETERMINE` for all components
8292ece3a9fcSMatthew G. Knepley . comps   - The components to set in the output, or NULL for all components
8293ece3a9fcSMatthew G. Knepley . localU  - The input field vector
8294ece3a9fcSMatthew G. Knepley . funcs   - The functions to evaluate, one per field
8295ece3a9fcSMatthew G. Knepley - mode    - The insertion mode for values
8296ece3a9fcSMatthew G. Knepley 
8297ece3a9fcSMatthew G. Knepley   Output Parameter:
8298ece3a9fcSMatthew G. Knepley . localX  - The output vector
8299ece3a9fcSMatthew G. Knepley 
8300ece3a9fcSMatthew G. Knepley    Calling sequence of func:
8301ece3a9fcSMatthew G. Knepley $    func(PetscInt dim, PetscInt Nf, PetscInt NfAux,
8302ece3a9fcSMatthew G. Knepley $         const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
8303ece3a9fcSMatthew G. Knepley $         const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
8304ece3a9fcSMatthew G. Knepley $         PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]);
8305ece3a9fcSMatthew G. Knepley 
8306ece3a9fcSMatthew G. Knepley +  dim          - The spatial dimension
8307ece3a9fcSMatthew G. Knepley .  Nf           - The number of input fields
8308ece3a9fcSMatthew G. Knepley .  NfAux        - The number of input auxiliary fields
8309ece3a9fcSMatthew G. Knepley .  uOff         - The offset of each field in u[]
8310ece3a9fcSMatthew G. Knepley .  uOff_x       - The offset of each field in u_x[]
8311ece3a9fcSMatthew G. Knepley .  u            - The field values at this point in space
8312ece3a9fcSMatthew G. Knepley .  u_t          - The field time derivative at this point in space (or NULL)
8313ece3a9fcSMatthew G. Knepley .  u_x          - The field derivatives at this point in space
8314ece3a9fcSMatthew G. Knepley .  aOff         - The offset of each auxiliary field in u[]
8315ece3a9fcSMatthew G. Knepley .  aOff_x       - The offset of each auxiliary field in u_x[]
8316ece3a9fcSMatthew G. Knepley .  a            - The auxiliary field values at this point in space
8317ece3a9fcSMatthew G. Knepley .  a_t          - The auxiliary field time derivative at this point in space (or NULL)
8318ece3a9fcSMatthew G. Knepley .  a_x          - The auxiliary field derivatives at this point in space
8319ece3a9fcSMatthew G. Knepley .  t            - The current time
8320ece3a9fcSMatthew G. Knepley .  x            - The coordinates of this point
8321ece3a9fcSMatthew G. Knepley .  n            - The face normal
8322ece3a9fcSMatthew G. Knepley .  numConstants - The number of constants
8323ece3a9fcSMatthew G. Knepley .  constants    - The value of each constant
8324ece3a9fcSMatthew G. Knepley -  f            - The value of the function at this point in space
8325ece3a9fcSMatthew G. Knepley 
8326ece3a9fcSMatthew G. Knepley   Note:
8327bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8328bb7acecfSBarry Smith   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8329bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8330ece3a9fcSMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8331ece3a9fcSMatthew G. Knepley 
8332ece3a9fcSMatthew G. Knepley   Level: intermediate
8333ece3a9fcSMatthew G. Knepley 
8334bb7acecfSBarry Smith   Developer Notes:
8335bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8336bb7acecfSBarry Smith 
8337bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8338bb7acecfSBarry Smith 
8339db781477SPatrick Sanan .seealso: `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8340ece3a9fcSMatthew G. Knepley @*/
8341d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectBdFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), InsertMode mode, Vec localX)
8342d71ae5a4SJacob Faibussowitsch {
8343ece3a9fcSMatthew G. Knepley   PetscFunctionBegin;
8344ece3a9fcSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8345064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localU, VEC_CLASSID, 8);
8346064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
83479566063dSJacob Faibussowitsch   PetscCall((dm->ops->projectbdfieldlabellocal)(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX));
8348ece3a9fcSMatthew G. Knepley   PetscFunctionReturn(0);
8349ece3a9fcSMatthew G. Knepley }
8350ece3a9fcSMatthew G. Knepley 
8351ece3a9fcSMatthew G. Knepley /*@C
83522716604bSToby Isaac   DMComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h.
83532716604bSToby Isaac 
8354bb7acecfSBarry Smith   Collective on dm
8355bb7acecfSBarry Smith 
83562716604bSToby Isaac   Input Parameters:
8357bb7acecfSBarry Smith + dm    - The `DM`
83580709b2feSToby Isaac . time  - The time
83592716604bSToby Isaac . funcs - The functions to evaluate for each field component
83602716604bSToby Isaac . ctxs  - Optional array of contexts to pass to each function, or NULL.
8361574a98acSMatthew G. Knepley - X     - The coefficient vector u_h, a global vector
83622716604bSToby Isaac 
83632716604bSToby Isaac   Output Parameter:
83642716604bSToby Isaac . diff - The diff ||u - u_h||_2
83652716604bSToby Isaac 
83662716604bSToby Isaac   Level: developer
83672716604bSToby Isaac 
8368bb7acecfSBarry Smith   Developer Notes:
8369bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8370bb7acecfSBarry Smith 
8371bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8372bb7acecfSBarry Smith 
8373db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
83742716604bSToby Isaac @*/
8375d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
8376d71ae5a4SJacob Faibussowitsch {
83772716604bSToby Isaac   PetscFunctionBegin;
83782716604bSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8379b698f381SToby Isaac   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
83809566063dSJacob Faibussowitsch   PetscCall((dm->ops->computel2diff)(dm, time, funcs, ctxs, X, diff));
83812716604bSToby Isaac   PetscFunctionReturn(0);
83822716604bSToby Isaac }
8383b698f381SToby Isaac 
8384b698f381SToby Isaac /*@C
8385b698f381SToby Isaac   DMComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h.
8386b698f381SToby Isaac 
8387d083f849SBarry Smith   Collective on dm
8388d083f849SBarry Smith 
8389b698f381SToby Isaac   Input Parameters:
8390bb7acecfSBarry Smith + dm    - The `DM`
8391b698f381SToby Isaac , time  - The time
8392b698f381SToby Isaac . funcs - The gradient functions to evaluate for each field component
8393b698f381SToby Isaac . ctxs  - Optional array of contexts to pass to each function, or NULL.
8394574a98acSMatthew G. Knepley . X     - The coefficient vector u_h, a global vector
8395b698f381SToby Isaac - n     - The vector to project along
8396b698f381SToby Isaac 
8397b698f381SToby Isaac   Output Parameter:
8398b698f381SToby Isaac . diff - The diff ||(grad u - grad u_h) . n||_2
8399b698f381SToby Isaac 
8400b698f381SToby Isaac   Level: developer
8401b698f381SToby Isaac 
8402bb7acecfSBarry Smith   Developer Notes:
8403bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8404bb7acecfSBarry Smith 
8405bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8406bb7acecfSBarry Smith 
8407bb7acecfSBarry Smith .seealso: `DMProjectFunction()`, `DMComputeL2Diff()`, `DMComputeL2FieldDiff()`
8408b698f381SToby Isaac @*/
8409d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff)
8410d71ae5a4SJacob Faibussowitsch {
8411b698f381SToby Isaac   PetscFunctionBegin;
8412b698f381SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8413b698f381SToby Isaac   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
84149566063dSJacob Faibussowitsch   PetscCall((dm->ops->computel2gradientdiff)(dm, time, funcs, ctxs, X, n, diff));
8415b698f381SToby Isaac   PetscFunctionReturn(0);
8416b698f381SToby Isaac }
8417b698f381SToby Isaac 
84182a16baeaSToby Isaac /*@C
84192a16baeaSToby Isaac   DMComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components.
84202a16baeaSToby Isaac 
8421d083f849SBarry Smith   Collective on dm
8422d083f849SBarry Smith 
84232a16baeaSToby Isaac   Input Parameters:
8424bb7acecfSBarry Smith + dm    - The `DM`
84252a16baeaSToby Isaac . time  - The time
84262a16baeaSToby Isaac . funcs - The functions to evaluate for each field component
84272a16baeaSToby Isaac . ctxs  - Optional array of contexts to pass to each function, or NULL.
8428574a98acSMatthew G. Knepley - X     - The coefficient vector u_h, a global vector
84292a16baeaSToby Isaac 
84302a16baeaSToby Isaac   Output Parameter:
84312a16baeaSToby Isaac . diff - The array of differences, ||u^f - u^f_h||_2
84322a16baeaSToby Isaac 
84332a16baeaSToby Isaac   Level: developer
84342a16baeaSToby Isaac 
8435bb7acecfSBarry Smith   Developer Notes:
8436bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8437bb7acecfSBarry Smith 
8438bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8439bb7acecfSBarry Smith 
8440db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
84412a16baeaSToby Isaac @*/
8442d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[])
8443d71ae5a4SJacob Faibussowitsch {
84442a16baeaSToby Isaac   PetscFunctionBegin;
84452a16baeaSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
84462a16baeaSToby Isaac   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
84479566063dSJacob Faibussowitsch   PetscCall((dm->ops->computel2fielddiff)(dm, time, funcs, ctxs, X, diff));
84482a16baeaSToby Isaac   PetscFunctionReturn(0);
84492a16baeaSToby Isaac }
84502a16baeaSToby Isaac 
8451df0b854cSToby Isaac /*@C
8452bb7acecfSBarry Smith  DMGetNeighbors - Gets an array containing the MPI ranks of all the processes neighbors
8453502a2867SDave May 
8454502a2867SDave May  Not Collective
8455502a2867SDave May 
8456502a2867SDave May  Input Parameter:
8457bb7acecfSBarry Smith .  dm    - The `DM`
8458502a2867SDave May 
84590a19bb7dSprj-  Output Parameters:
84600a19bb7dSprj- +  nranks - the number of neighbours
84610a19bb7dSprj- -  ranks - the neighbors ranks
8462502a2867SDave May 
8463bb7acecfSBarry Smith  Note:
8464bb7acecfSBarry Smith  Do not free the array, it is freed when the `DM` is destroyed.
8465502a2867SDave May 
8466502a2867SDave May  Level: beginner
8467502a2867SDave May 
8468db781477SPatrick Sanan  .seealso: `DMDAGetNeighbors()`, `PetscSFGetRootRanks()`
8469502a2867SDave May @*/
8470d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNeighbors(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[])
8471d71ae5a4SJacob Faibussowitsch {
8472502a2867SDave May   PetscFunctionBegin;
8473502a2867SDave May   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
84749566063dSJacob Faibussowitsch   PetscCall((dm->ops->getneighbors)(dm, nranks, ranks));
8475502a2867SDave May   PetscFunctionReturn(0);
8476502a2867SDave May }
8477502a2867SDave May 
8478531c7667SBarry Smith #include <petsc/private/matimpl.h> /* Needed because of coloring->ctype below */
8479531c7667SBarry Smith 
8480531c7667SBarry Smith /*
8481531c7667SBarry Smith     Converts the input vector to a ghosted vector and then calls the standard coloring code.
8482531c7667SBarry Smith     This has be a different function because it requires DM which is not defined in the Mat library
8483531c7667SBarry Smith */
8484d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringApply_AIJDM(Mat J, MatFDColoring coloring, Vec x1, void *sctx)
8485d71ae5a4SJacob Faibussowitsch {
8486531c7667SBarry Smith   PetscFunctionBegin;
8487531c7667SBarry Smith   if (coloring->ctype == IS_COLORING_LOCAL) {
8488531c7667SBarry Smith     Vec x1local;
8489531c7667SBarry Smith     DM  dm;
84909566063dSJacob Faibussowitsch     PetscCall(MatGetDM(J, &dm));
84917a8be351SBarry Smith     PetscCheck(dm, PetscObjectComm((PetscObject)J), PETSC_ERR_ARG_INCOMP, "IS_COLORING_LOCAL requires a DM");
84929566063dSJacob Faibussowitsch     PetscCall(DMGetLocalVector(dm, &x1local));
84939566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalBegin(dm, x1, INSERT_VALUES, x1local));
84949566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalEnd(dm, x1, INSERT_VALUES, x1local));
8495531c7667SBarry Smith     x1 = x1local;
8496531c7667SBarry Smith   }
84979566063dSJacob Faibussowitsch   PetscCall(MatFDColoringApply_AIJ(J, coloring, x1, sctx));
8498531c7667SBarry Smith   if (coloring->ctype == IS_COLORING_LOCAL) {
8499531c7667SBarry Smith     DM dm;
85009566063dSJacob Faibussowitsch     PetscCall(MatGetDM(J, &dm));
85019566063dSJacob Faibussowitsch     PetscCall(DMRestoreLocalVector(dm, &x1));
8502531c7667SBarry Smith   }
8503531c7667SBarry Smith   PetscFunctionReturn(0);
8504531c7667SBarry Smith }
8505531c7667SBarry Smith 
8506531c7667SBarry Smith /*@
8507bb7acecfSBarry Smith     MatFDColoringUseDM - allows a `MatFDColoring` object to use the `DM` associated with the matrix to compute a `IS_COLORING_LOCAL` coloring
8508531c7667SBarry Smith 
8509531c7667SBarry Smith     Input Parameter:
8510bb7acecfSBarry Smith .    coloring - the `MatFDColoring` object
8511531c7667SBarry Smith 
8512bb7acecfSBarry Smith     Developer Note:
8513bb7acecfSBarry Smith     this routine exists because the PETSc `Mat` library does not know about the `DM` objects
8514531c7667SBarry Smith 
85151b266c99SBarry Smith     Level: advanced
85161b266c99SBarry Smith 
8517db781477SPatrick Sanan .seealso: `MatFDColoring`, `MatFDColoringCreate()`, `ISColoringType`
8518531c7667SBarry Smith @*/
8519d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringUseDM(Mat coloring, MatFDColoring fdcoloring)
8520d71ae5a4SJacob Faibussowitsch {
8521531c7667SBarry Smith   PetscFunctionBegin;
8522531c7667SBarry Smith   coloring->ops->fdcoloringapply = MatFDColoringApply_AIJDM;
8523531c7667SBarry Smith   PetscFunctionReturn(0);
8524531c7667SBarry Smith }
85258320bc6fSPatrick Sanan 
85268320bc6fSPatrick Sanan /*@
8527bb7acecfSBarry Smith     DMGetCompatibility - determine if two `DM`s are compatible
85288320bc6fSPatrick Sanan 
85298320bc6fSPatrick Sanan     Collective
85308320bc6fSPatrick Sanan 
85318320bc6fSPatrick Sanan     Input Parameters:
8532bb7acecfSBarry Smith +    dm1 - the first `DM`
8533bb7acecfSBarry Smith -    dm2 - the second `DM`
85348320bc6fSPatrick Sanan 
85358320bc6fSPatrick Sanan     Output Parameters:
8536bb7acecfSBarry Smith +    compatible - whether or not the two `DM`s are compatible
8537bb7acecfSBarry Smith -    set - whether or not the compatible value was actually determined and set
85388320bc6fSPatrick Sanan 
85398320bc6fSPatrick Sanan     Notes:
8540bb7acecfSBarry Smith     Two `DM`s are deemed compatible if they represent the same parallel decomposition
85413d862458SPatrick Sanan     of the same topology. This implies that the section (field data) on one
85428320bc6fSPatrick Sanan     "makes sense" with respect to the topology and parallel decomposition of the other.
8543bb7acecfSBarry Smith     Loosely speaking, compatible `DM`s represent the same domain and parallel
85443d862458SPatrick Sanan     decomposition, but hold different data.
85458320bc6fSPatrick Sanan 
85468320bc6fSPatrick Sanan     Typically, one would confirm compatibility if intending to simultaneously iterate
8547bb7acecfSBarry Smith     over a pair of vectors obtained from different `DM`s.
85488320bc6fSPatrick Sanan 
8549bb7acecfSBarry Smith     For example, two `DMDA` objects are compatible if they have the same local
85508320bc6fSPatrick Sanan     and global sizes and the same stencil width. They can have different numbers
85518320bc6fSPatrick Sanan     of degrees of freedom per node. Thus, one could use the node numbering from
8552bb7acecfSBarry Smith     either `DM` in bounds for a loop over vectors derived from either `DM`.
85538320bc6fSPatrick Sanan 
8554bb7acecfSBarry Smith     Consider the operation of summing data living on a 2-dof `DMDA` to data living
8555bb7acecfSBarry Smith     on a 1-dof `DMDA`, which should be compatible, as in the following snippet.
85568320bc6fSPatrick Sanan .vb
85578320bc6fSPatrick Sanan   ...
85589566063dSJacob Faibussowitsch   PetscCall(DMGetCompatibility(da1,da2,&compatible,&set));
85598320bc6fSPatrick Sanan   if (set && compatible)  {
85609566063dSJacob Faibussowitsch     PetscCall(DMDAVecGetArrayDOF(da1,vec1,&arr1));
85619566063dSJacob Faibussowitsch     PetscCall(DMDAVecGetArrayDOF(da2,vec2,&arr2));
85629566063dSJacob Faibussowitsch     PetscCall(DMDAGetCorners(da1,&x,&y,NULL,&m,&n,NULL));
85638320bc6fSPatrick Sanan     for (j=y; j<y+n; ++j) {
85648320bc6fSPatrick Sanan       for (i=x; i<x+m, ++i) {
85658320bc6fSPatrick Sanan         arr1[j][i][0] = arr2[j][i][0] + arr2[j][i][1];
85668320bc6fSPatrick Sanan       }
85678320bc6fSPatrick Sanan     }
85689566063dSJacob Faibussowitsch     PetscCall(DMDAVecRestoreArrayDOF(da1,vec1,&arr1));
85699566063dSJacob Faibussowitsch     PetscCall(DMDAVecRestoreArrayDOF(da2,vec2,&arr2));
85708320bc6fSPatrick Sanan   } else {
85718320bc6fSPatrick Sanan     SETERRQ(PetscObjectComm((PetscObject)da1,PETSC_ERR_ARG_INCOMP,"DMDA objects incompatible");
85728320bc6fSPatrick Sanan   }
85738320bc6fSPatrick Sanan   ...
85748320bc6fSPatrick Sanan .ve
85758320bc6fSPatrick Sanan 
8576bb7acecfSBarry Smith     Checking compatibility might be expensive for a given implementation of `DM`,
85778320bc6fSPatrick Sanan     or might be impossible to unambiguously confirm or deny. For this reason,
85788320bc6fSPatrick Sanan     this function may decline to determine compatibility, and hence users should
85798320bc6fSPatrick Sanan     always check the "set" output parameter.
85808320bc6fSPatrick Sanan 
8581bb7acecfSBarry Smith     A `DM` is always compatible with itself.
85828320bc6fSPatrick Sanan 
8583bb7acecfSBarry Smith     In the current implementation, `DM`s which live on "unequal" communicators
85848320bc6fSPatrick Sanan     (MPI_UNEQUAL in the terminology of MPI_Comm_compare()) are always deemed
85858320bc6fSPatrick Sanan     incompatible.
85868320bc6fSPatrick Sanan 
85878320bc6fSPatrick Sanan     This function is labeled "Collective," as information about all subdomains
8588bb7acecfSBarry Smith     is required on each rank. However, in `DM` implementations which store all this
85898320bc6fSPatrick Sanan     information locally, this function may be merely "Logically Collective".
85908320bc6fSPatrick Sanan 
8591bb7acecfSBarry Smith     Developer Note:
8592bb7acecfSBarry Smith     Compatibility is assumed to be a symmetric concept; `DM` A is compatible with `DM` B
85933d862458SPatrick Sanan     iff B is compatible with A. Thus, this function checks the implementations
8594a5bc1bf3SBarry Smith     of both dm and dmc (if they are of different types), attempting to determine
8595bb7acecfSBarry Smith     compatibility. It is left to `DM` implementers to ensure that symmetry is
85968320bc6fSPatrick Sanan     preserved. The simplest way to do this is, when implementing type-specific
85973d862458SPatrick Sanan     logic for this function, is to check for existing logic in the implementation
8598bb7acecfSBarry Smith     of other `DM` types and let *set = PETSC_FALSE if found.
85998320bc6fSPatrick Sanan 
86008320bc6fSPatrick Sanan     Level: advanced
86018320bc6fSPatrick Sanan 
8602db781477SPatrick Sanan .seealso: `DM`, `DMDACreateCompatibleDMDA()`, `DMStagCreateCompatibleDMStag()`
86038320bc6fSPatrick Sanan @*/
8604d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCompatibility(DM dm1, DM dm2, PetscBool *compatible, PetscBool *set)
8605d71ae5a4SJacob Faibussowitsch {
86068320bc6fSPatrick Sanan   PetscMPIInt compareResult;
86078320bc6fSPatrick Sanan   DMType      type, type2;
86088320bc6fSPatrick Sanan   PetscBool   sameType;
86098320bc6fSPatrick Sanan 
86108320bc6fSPatrick Sanan   PetscFunctionBegin;
8611a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dm1, DM_CLASSID, 1);
86128320bc6fSPatrick Sanan   PetscValidHeaderSpecific(dm2, DM_CLASSID, 2);
86138320bc6fSPatrick Sanan 
86148320bc6fSPatrick Sanan   /* Declare a DM compatible with itself */
8615a5bc1bf3SBarry Smith   if (dm1 == dm2) {
86168320bc6fSPatrick Sanan     *set        = PETSC_TRUE;
86178320bc6fSPatrick Sanan     *compatible = PETSC_TRUE;
86188320bc6fSPatrick Sanan     PetscFunctionReturn(0);
86198320bc6fSPatrick Sanan   }
86208320bc6fSPatrick Sanan 
86218320bc6fSPatrick Sanan   /* Declare a DM incompatible with a DM that lives on an "unequal"
86228320bc6fSPatrick Sanan      communicator. Note that this does not preclude compatibility with
86238320bc6fSPatrick Sanan      DMs living on "congruent" or "similar" communicators, but this must be
86248320bc6fSPatrick Sanan      determined by the implementation-specific logic */
86259566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)dm1), PetscObjectComm((PetscObject)dm2), &compareResult));
86268320bc6fSPatrick Sanan   if (compareResult == MPI_UNEQUAL) {
86278320bc6fSPatrick Sanan     *set        = PETSC_TRUE;
86288320bc6fSPatrick Sanan     *compatible = PETSC_FALSE;
86298320bc6fSPatrick Sanan     PetscFunctionReturn(0);
86308320bc6fSPatrick Sanan   }
86318320bc6fSPatrick Sanan 
86328320bc6fSPatrick Sanan   /* Pass to the implementation-specific routine, if one exists. */
8633a5bc1bf3SBarry Smith   if (dm1->ops->getcompatibility) {
8634dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm1, getcompatibility, dm2, compatible, set);
8635b9d85ea2SLisandro Dalcin     if (*set) PetscFunctionReturn(0);
86368320bc6fSPatrick Sanan   }
86378320bc6fSPatrick Sanan 
8638a5bc1bf3SBarry Smith   /* If dm1 and dm2 are of different types, then attempt to check compatibility
86398320bc6fSPatrick Sanan      with an implementation of this function from dm2 */
86409566063dSJacob Faibussowitsch   PetscCall(DMGetType(dm1, &type));
86419566063dSJacob Faibussowitsch   PetscCall(DMGetType(dm2, &type2));
86429566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(type, type2, &sameType));
86438320bc6fSPatrick Sanan   if (!sameType && dm2->ops->getcompatibility) {
8644dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm2, getcompatibility, dm1, compatible, set); /* Note argument order */
86458320bc6fSPatrick Sanan   } else {
86468320bc6fSPatrick Sanan     *set = PETSC_FALSE;
86478320bc6fSPatrick Sanan   }
86488320bc6fSPatrick Sanan   PetscFunctionReturn(0);
86498320bc6fSPatrick Sanan }
8650c0f0dcc3SMatthew G. Knepley 
8651c0f0dcc3SMatthew G. Knepley /*@C
8652bb7acecfSBarry Smith   DMMonitorSet - Sets an additional monitor function that is to be used after a solve to monitor discretization performance.
8653c0f0dcc3SMatthew G. Knepley 
8654bb7acecfSBarry Smith   Logically Collective on dm
8655c0f0dcc3SMatthew G. Knepley 
8656c0f0dcc3SMatthew G. Knepley   Input Parameters:
8657bb7acecfSBarry Smith + DM - the `DM`
8658c0f0dcc3SMatthew G. Knepley . f - the monitor function
8659c0f0dcc3SMatthew G. Knepley . mctx - [optional] user-defined context for private data for the monitor routine (use NULL if no context is desired)
8660c0f0dcc3SMatthew G. Knepley - monitordestroy - [optional] routine that frees monitor context (may be NULL)
8661c0f0dcc3SMatthew G. Knepley 
8662c0f0dcc3SMatthew G. Knepley   Options Database Keys:
8663bb7acecfSBarry Smith - -dm_monitor_cancel - cancels all monitors that have been hardwired into a code by calls to `DMMonitorSet()`, but
8664c0f0dcc3SMatthew G. Knepley                             does not cancel those set via the options database.
8665c0f0dcc3SMatthew G. Knepley 
8666bb7acecfSBarry Smith   Note:
8667c0f0dcc3SMatthew G. Knepley   Several different monitoring routines may be set by calling
8668bb7acecfSBarry Smith   `DMMonitorSet()` multiple times or with `DMMonitorSetFromOptions()`; all will be called in the
8669c0f0dcc3SMatthew G. Knepley   order in which they were set.
8670c0f0dcc3SMatthew G. Knepley 
8671bb7acecfSBarry Smith   Fortran Note:
8672bb7acecfSBarry Smith   Only a single monitor function can be set for each `DM` object
8673bb7acecfSBarry Smith 
8674bb7acecfSBarry Smith   Developer Note:
8675bb7acecfSBarry Smith   This API has a generic name but seems specific to a very particular aspect of the use of `DM`
8676c0f0dcc3SMatthew G. Knepley 
8677c0f0dcc3SMatthew G. Knepley   Level: intermediate
8678c0f0dcc3SMatthew G. Knepley 
8679bb7acecfSBarry Smith .seealso: `DMMonitorCancel()`, `DMMonitorSetFromOptions()`, `DMMonitor()`
8680c0f0dcc3SMatthew G. Knepley @*/
8681d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSet(DM dm, PetscErrorCode (*f)(DM, void *), void *mctx, PetscErrorCode (*monitordestroy)(void **))
8682d71ae5a4SJacob Faibussowitsch {
8683c0f0dcc3SMatthew G. Knepley   PetscInt m;
8684c0f0dcc3SMatthew G. Knepley 
8685c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
8686c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8687c0f0dcc3SMatthew G. Knepley   for (m = 0; m < dm->numbermonitors; ++m) {
8688c0f0dcc3SMatthew G. Knepley     PetscBool identical;
8689c0f0dcc3SMatthew G. Knepley 
86909566063dSJacob Faibussowitsch     PetscCall(PetscMonitorCompare((PetscErrorCode(*)(void))f, mctx, monitordestroy, (PetscErrorCode(*)(void))dm->monitor[m], dm->monitorcontext[m], dm->monitordestroy[m], &identical));
8691c0f0dcc3SMatthew G. Knepley     if (identical) PetscFunctionReturn(0);
8692c0f0dcc3SMatthew G. Knepley   }
86937a8be351SBarry Smith   PetscCheck(dm->numbermonitors < MAXDMMONITORS, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many monitors set");
8694c0f0dcc3SMatthew G. Knepley   dm->monitor[dm->numbermonitors]          = f;
8695c0f0dcc3SMatthew G. Knepley   dm->monitordestroy[dm->numbermonitors]   = monitordestroy;
8696c0f0dcc3SMatthew G. Knepley   dm->monitorcontext[dm->numbermonitors++] = (void *)mctx;
8697c0f0dcc3SMatthew G. Knepley   PetscFunctionReturn(0);
8698c0f0dcc3SMatthew G. Knepley }
8699c0f0dcc3SMatthew G. Knepley 
8700c0f0dcc3SMatthew G. Knepley /*@
8701bb7acecfSBarry Smith   DMMonitorCancel - Clears all the monitor functions for a `DM` object.
8702c0f0dcc3SMatthew G. Knepley 
8703bb7acecfSBarry Smith   Logically Collective on dm
8704c0f0dcc3SMatthew G. Knepley 
8705c0f0dcc3SMatthew G. Knepley   Input Parameter:
8706c0f0dcc3SMatthew G. Knepley . dm - the DM
8707c0f0dcc3SMatthew G. Knepley 
8708c0f0dcc3SMatthew G. Knepley   Options Database Key:
8709c0f0dcc3SMatthew G. Knepley . -dm_monitor_cancel - cancels all monitors that have been hardwired
8710bb7acecfSBarry Smith   into a code by calls to `DMonitorSet()`, but does not cancel those
8711c0f0dcc3SMatthew G. Knepley   set via the options database
8712c0f0dcc3SMatthew G. Knepley 
8713bb7acecfSBarry Smith   Note:
8714bb7acecfSBarry Smith   There is no way to clear one specific monitor from a `DM` object.
8715c0f0dcc3SMatthew G. Knepley 
8716c0f0dcc3SMatthew G. Knepley   Level: intermediate
8717c0f0dcc3SMatthew G. Knepley 
8718bb7acecfSBarry Smith .seealso: `DMMonitorSet()`, `DMMonitorSetFromOptions()`, `DMMonitor()`
8719c0f0dcc3SMatthew G. Knepley @*/
8720d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorCancel(DM dm)
8721d71ae5a4SJacob Faibussowitsch {
8722c0f0dcc3SMatthew G. Knepley   PetscInt m;
8723c0f0dcc3SMatthew G. Knepley 
8724c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
8725c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8726c0f0dcc3SMatthew G. Knepley   for (m = 0; m < dm->numbermonitors; ++m) {
87279566063dSJacob Faibussowitsch     if (dm->monitordestroy[m]) PetscCall((*dm->monitordestroy[m])(&dm->monitorcontext[m]));
8728c0f0dcc3SMatthew G. Knepley   }
8729c0f0dcc3SMatthew G. Knepley   dm->numbermonitors = 0;
8730c0f0dcc3SMatthew G. Knepley   PetscFunctionReturn(0);
8731c0f0dcc3SMatthew G. Knepley }
8732c0f0dcc3SMatthew G. Knepley 
8733c0f0dcc3SMatthew G. Knepley /*@C
8734c0f0dcc3SMatthew G. Knepley   DMMonitorSetFromOptions - Sets a monitor function and viewer appropriate for the type indicated by the user
8735c0f0dcc3SMatthew G. Knepley 
8736bb7acecfSBarry Smith   Collective on dm
8737c0f0dcc3SMatthew G. Knepley 
8738c0f0dcc3SMatthew G. Knepley   Input Parameters:
8739bb7acecfSBarry Smith + dm   - `DM` object you wish to monitor
8740c0f0dcc3SMatthew G. Knepley . name - the monitor type one is seeking
8741c0f0dcc3SMatthew G. Knepley . help - message indicating what monitoring is done
8742c0f0dcc3SMatthew G. Knepley . manual - manual page for the monitor
8743c0f0dcc3SMatthew G. Knepley . monitor - the monitor function
8744bb7acecfSBarry Smith - monitorsetup - a function that is called once ONLY if the user selected this monitor that may set additional features of the `DM` or `PetscViewer` objects
8745c0f0dcc3SMatthew G. Knepley 
8746c0f0dcc3SMatthew G. Knepley   Output Parameter:
8747c0f0dcc3SMatthew G. Knepley . flg - Flag set if the monitor was created
8748c0f0dcc3SMatthew G. Knepley 
8749c0f0dcc3SMatthew G. Knepley   Level: developer
8750c0f0dcc3SMatthew G. Knepley 
8751db781477SPatrick Sanan .seealso: `PetscOptionsGetViewer()`, `PetscOptionsGetReal()`, `PetscOptionsHasName()`, `PetscOptionsGetString()`,
8752db781477SPatrick Sanan           `PetscOptionsGetIntArray()`, `PetscOptionsGetRealArray()`, `PetscOptionsBool()`
8753db781477SPatrick Sanan           `PetscOptionsInt()`, `PetscOptionsString()`, `PetscOptionsReal()`, `PetscOptionsBool()`,
8754db781477SPatrick Sanan           `PetscOptionsName()`, `PetscOptionsBegin()`, `PetscOptionsEnd()`, `PetscOptionsHeadBegin()`,
8755c2e3fba1SPatrick Sanan           `PetscOptionsStringArray()`, `PetscOptionsRealArray()`, `PetscOptionsScalar()`,
8756db781477SPatrick Sanan           `PetscOptionsBoolGroupBegin()`, `PetscOptionsBoolGroup()`, `PetscOptionsBoolGroupEnd()`,
8757bb7acecfSBarry Smith           `PetscOptionsFList()`, `PetscOptionsEList()`, `DMMonitor()`, `DMMonitorSet()`
8758c0f0dcc3SMatthew G. Knepley @*/
8759d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSetFromOptions(DM dm, const char name[], const char help[], const char manual[], PetscErrorCode (*monitor)(DM, void *), PetscErrorCode (*monitorsetup)(DM, PetscViewerAndFormat *), PetscBool *flg)
8760d71ae5a4SJacob Faibussowitsch {
8761c0f0dcc3SMatthew G. Knepley   PetscViewer       viewer;
8762c0f0dcc3SMatthew G. Knepley   PetscViewerFormat format;
8763c0f0dcc3SMatthew G. Knepley 
8764c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
8765c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
87669566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetViewer(PetscObjectComm((PetscObject)dm), ((PetscObject)dm)->options, ((PetscObject)dm)->prefix, name, &viewer, &format, flg));
8767c0f0dcc3SMatthew G. Knepley   if (*flg) {
8768c0f0dcc3SMatthew G. Knepley     PetscViewerAndFormat *vf;
8769c0f0dcc3SMatthew G. Knepley 
87709566063dSJacob Faibussowitsch     PetscCall(PetscViewerAndFormatCreate(viewer, format, &vf));
87719566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)viewer));
87729566063dSJacob Faibussowitsch     if (monitorsetup) PetscCall((*monitorsetup)(dm, vf));
87739566063dSJacob Faibussowitsch     PetscCall(DMMonitorSet(dm, (PetscErrorCode(*)(DM, void *))monitor, vf, (PetscErrorCode(*)(void **))PetscViewerAndFormatDestroy));
8774c0f0dcc3SMatthew G. Knepley   }
8775c0f0dcc3SMatthew G. Knepley   PetscFunctionReturn(0);
8776c0f0dcc3SMatthew G. Knepley }
8777c0f0dcc3SMatthew G. Knepley 
8778c0f0dcc3SMatthew G. Knepley /*@
8779c0f0dcc3SMatthew G. Knepley    DMMonitor - runs the user provided monitor routines, if they exist
8780c0f0dcc3SMatthew G. Knepley 
8781bb7acecfSBarry Smith    Collective on dm
8782c0f0dcc3SMatthew G. Knepley 
8783c0f0dcc3SMatthew G. Knepley    Input Parameters:
8784bb7acecfSBarry Smith .  dm - The `DM`
8785c0f0dcc3SMatthew G. Knepley 
8786c0f0dcc3SMatthew G. Knepley    Level: developer
8787c0f0dcc3SMatthew G. Knepley 
8788bb7acecfSBarry Smith    Question:
8789bb7acecfSBarry Smith    Note should indicate when during the life of the `DM` the monitor is run. It appears to be related to the discretization process seems rather specialized
8790bb7acecfSBarry Smith    since some `DM` have no concept of discretization
8791bb7acecfSBarry Smith 
8792bb7acecfSBarry Smith .seealso: `DMMonitorSet()`, `DMMonitorSetFromOptions()`
8793c0f0dcc3SMatthew G. Knepley @*/
8794d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitor(DM dm)
8795d71ae5a4SJacob Faibussowitsch {
8796c0f0dcc3SMatthew G. Knepley   PetscInt m;
8797c0f0dcc3SMatthew G. Knepley 
8798c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
8799c0f0dcc3SMatthew G. Knepley   if (!dm) PetscFunctionReturn(0);
8800c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
880148a46eb9SPierre Jolivet   for (m = 0; m < dm->numbermonitors; ++m) PetscCall((*dm->monitor[m])(dm, dm->monitorcontext[m]));
8802c0f0dcc3SMatthew G. Knepley   PetscFunctionReturn(0);
8803c0f0dcc3SMatthew G. Knepley }
88042e4af2aeSMatthew G. Knepley 
88052e4af2aeSMatthew G. Knepley /*@
8806bb7acecfSBarry Smith   DMComputeError - Computes the error assuming the user has provided the exact solution functions
88072e4af2aeSMatthew G. Knepley 
8808bb7acecfSBarry Smith   Collective on dm
88092e4af2aeSMatthew G. Knepley 
88102e4af2aeSMatthew G. Knepley   Input Parameters:
8811bb7acecfSBarry Smith + dm     - The `DM`
88126b867d5aSJose E. Roman - sol    - The solution vector
88132e4af2aeSMatthew G. Knepley 
88146b867d5aSJose E. Roman   Input/Output Parameter:
88156b867d5aSJose E. Roman . errors - An array of length Nf, the number of fields, or NULL for no output; on output
88166b867d5aSJose E. Roman            contains the error in each field
88176b867d5aSJose E. Roman 
88186b867d5aSJose E. Roman   Output Parameter:
88196b867d5aSJose E. Roman . errorVec - A vector to hold the cellwise error (may be NULL)
88202e4af2aeSMatthew G. Knepley 
8821bb7acecfSBarry Smith   Note:
8822bb7acecfSBarry Smith   The exact solutions come from the `PetscDS` object, and the time comes from `DMGetOutputSequenceNumber()`.
88232e4af2aeSMatthew G. Knepley 
88242e4af2aeSMatthew G. Knepley   Level: developer
88252e4af2aeSMatthew G. Knepley 
8826db781477SPatrick Sanan .seealso: `DMMonitorSet()`, `DMGetRegionNumDS()`, `PetscDSGetExactSolution()`, `DMGetOutputSequenceNumber()`
88272e4af2aeSMatthew G. Knepley @*/
8828d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeError(DM dm, Vec sol, PetscReal errors[], Vec *errorVec)
8829d71ae5a4SJacob Faibussowitsch {
88302e4af2aeSMatthew G. Knepley   PetscErrorCode (**exactSol)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *);
88312e4af2aeSMatthew G. Knepley   void    **ctxs;
88322e4af2aeSMatthew G. Knepley   PetscReal time;
88332e4af2aeSMatthew G. Knepley   PetscInt  Nf, f, Nds, s;
88342e4af2aeSMatthew G. Knepley 
88352e4af2aeSMatthew G. Knepley   PetscFunctionBegin;
88369566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
88379566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(Nf, &exactSol, Nf, &ctxs));
88389566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
88392e4af2aeSMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
88402e4af2aeSMatthew G. Knepley     PetscDS         ds;
88412e4af2aeSMatthew G. Knepley     DMLabel         label;
88422e4af2aeSMatthew G. Knepley     IS              fieldIS;
88432e4af2aeSMatthew G. Knepley     const PetscInt *fields;
88442e4af2aeSMatthew G. Knepley     PetscInt        dsNf;
88452e4af2aeSMatthew G. Knepley 
88469566063dSJacob Faibussowitsch     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds));
88479566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsNf));
88489566063dSJacob Faibussowitsch     if (fieldIS) PetscCall(ISGetIndices(fieldIS, &fields));
88492e4af2aeSMatthew G. Knepley     for (f = 0; f < dsNf; ++f) {
88502e4af2aeSMatthew G. Knepley       const PetscInt field = fields[f];
88519566063dSJacob Faibussowitsch       PetscCall(PetscDSGetExactSolution(ds, field, &exactSol[field], &ctxs[field]));
88522e4af2aeSMatthew G. Knepley     }
88539566063dSJacob Faibussowitsch     if (fieldIS) PetscCall(ISRestoreIndices(fieldIS, &fields));
88542e4af2aeSMatthew G. Knepley   }
8855ad540459SPierre Jolivet   for (f = 0; f < Nf; ++f) PetscCheck(exactSol[f], PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "DS must contain exact solution functions in order to calculate error, missing for field %" PetscInt_FMT, f);
88569566063dSJacob Faibussowitsch   PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time));
88579566063dSJacob Faibussowitsch   if (errors) PetscCall(DMComputeL2FieldDiff(dm, time, exactSol, ctxs, sol, errors));
88582e4af2aeSMatthew G. Knepley   if (errorVec) {
88592e4af2aeSMatthew G. Knepley     DM             edm;
88602e4af2aeSMatthew G. Knepley     DMPolytopeType ct;
88612e4af2aeSMatthew G. Knepley     PetscBool      simplex;
88622e4af2aeSMatthew G. Knepley     PetscInt       dim, cStart, Nf;
88632e4af2aeSMatthew G. Knepley 
88649566063dSJacob Faibussowitsch     PetscCall(DMClone(dm, &edm));
88659566063dSJacob Faibussowitsch     PetscCall(DMGetDimension(edm, &dim));
88669566063dSJacob Faibussowitsch     PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL));
88679566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCellType(dm, cStart, &ct));
88682e4af2aeSMatthew G. Knepley     simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE;
88699566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
88702e4af2aeSMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
88712e4af2aeSMatthew G. Knepley       PetscFE         fe, efe;
88722e4af2aeSMatthew G. Knepley       PetscQuadrature q;
88732e4af2aeSMatthew G. Knepley       const char     *name;
88742e4af2aeSMatthew G. Knepley 
88759566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe));
88769566063dSJacob Faibussowitsch       PetscCall(PetscFECreateLagrange(PETSC_COMM_SELF, dim, Nf, simplex, 0, PETSC_DETERMINE, &efe));
88779566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetName((PetscObject)fe, &name));
88789566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)efe, name));
88799566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &q));
88809566063dSJacob Faibussowitsch       PetscCall(PetscFESetQuadrature(efe, q));
88819566063dSJacob Faibussowitsch       PetscCall(DMSetField(edm, f, NULL, (PetscObject)efe));
88829566063dSJacob Faibussowitsch       PetscCall(PetscFEDestroy(&efe));
88832e4af2aeSMatthew G. Knepley     }
88849566063dSJacob Faibussowitsch     PetscCall(DMCreateDS(edm));
88852e4af2aeSMatthew G. Knepley 
88869566063dSJacob Faibussowitsch     PetscCall(DMCreateGlobalVector(edm, errorVec));
88879566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)*errorVec, "Error"));
88889566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeL2DiffVec(dm, time, exactSol, ctxs, sol, *errorVec));
88899566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&edm));
88902e4af2aeSMatthew G. Knepley   }
88919566063dSJacob Faibussowitsch   PetscCall(PetscFree2(exactSol, ctxs));
88922e4af2aeSMatthew G. Knepley   PetscFunctionReturn(0);
88932e4af2aeSMatthew G. Knepley }
88949a2a23afSMatthew G. Knepley 
88959a2a23afSMatthew G. Knepley /*@
8896bb7acecfSBarry Smith   DMGetNumAuxiliaryVec - Get the number of auxiliary vectors associated with this `DM`
88979a2a23afSMatthew G. Knepley 
88989a2a23afSMatthew G. Knepley   Not collective
88999a2a23afSMatthew G. Knepley 
89009a2a23afSMatthew G. Knepley   Input Parameter:
8901bb7acecfSBarry Smith . dm     - The `DM`
89029a2a23afSMatthew G. Knepley 
89039a2a23afSMatthew G. Knepley   Output Parameter:
8904a5b23f4aSJose E. Roman . numAux - The number of auxiliary data vectors
89059a2a23afSMatthew G. Knepley 
89069a2a23afSMatthew G. Knepley   Level: advanced
89079a2a23afSMatthew G. Knepley 
8908bb7acecfSBarry Smith .seealso: `DMSetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`
89099a2a23afSMatthew G. Knepley @*/
8910d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumAuxiliaryVec(DM dm, PetscInt *numAux)
8911d71ae5a4SJacob Faibussowitsch {
89129a2a23afSMatthew G. Knepley   PetscFunctionBegin;
89139a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
89149566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxGetSize(dm->auxData, numAux));
89159a2a23afSMatthew G. Knepley   PetscFunctionReturn(0);
89169a2a23afSMatthew G. Knepley }
89179a2a23afSMatthew G. Knepley 
89189a2a23afSMatthew G. Knepley /*@
8919ac17215fSMatthew G. Knepley   DMGetAuxiliaryVec - Get the auxiliary vector for region specified by the given label and value, and equation part
89209a2a23afSMatthew G. Knepley 
89219a2a23afSMatthew G. Knepley   Not collective
89229a2a23afSMatthew G. Knepley 
89239a2a23afSMatthew G. Knepley   Input Parameters:
8924bb7acecfSBarry Smith + dm     - The `DM`
8925bb7acecfSBarry Smith . label  - The `DMLabel`
8926ac17215fSMatthew G. Knepley . value  - The label value indicating the region
8927ac17215fSMatthew G. Knepley - part   - The equation part, or 0 if unused
89289a2a23afSMatthew G. Knepley 
89299a2a23afSMatthew G. Knepley   Output Parameter:
8930bb7acecfSBarry Smith . aux    - The `Vec` holding auxiliary field data
89319a2a23afSMatthew G. Knepley 
8932bb7acecfSBarry Smith   Note:
8933bb7acecfSBarry Smith   If no auxiliary vector is found for this (label, value), (NULL, 0, 0) is checked as well.
893404c51a94SMatthew G. Knepley 
89359a2a23afSMatthew G. Knepley   Level: advanced
89369a2a23afSMatthew G. Knepley 
8937bb7acecfSBarry Smith .seealso: `DMSetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryLabels()`
89389a2a23afSMatthew G. Knepley @*/
8939d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec *aux)
8940d71ae5a4SJacob Faibussowitsch {
8941ac17215fSMatthew G. Knepley   PetscHashAuxKey key, wild = {NULL, 0, 0};
894204c51a94SMatthew G. Knepley   PetscBool       has;
89439a2a23afSMatthew G. Knepley 
89449a2a23afSMatthew G. Knepley   PetscFunctionBegin;
89459a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
89469a2a23afSMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
89479a2a23afSMatthew G. Knepley   key.label = label;
89489a2a23afSMatthew G. Knepley   key.value = value;
8949ac17215fSMatthew G. Knepley   key.part  = part;
89509566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxHas(dm->auxData, key, &has));
89519566063dSJacob Faibussowitsch   if (has) PetscCall(PetscHMapAuxGet(dm->auxData, key, aux));
89529566063dSJacob Faibussowitsch   else PetscCall(PetscHMapAuxGet(dm->auxData, wild, aux));
89539a2a23afSMatthew G. Knepley   PetscFunctionReturn(0);
89549a2a23afSMatthew G. Knepley }
89559a2a23afSMatthew G. Knepley 
89569a2a23afSMatthew G. Knepley /*@
8957bb7acecfSBarry Smith   DMSetAuxiliaryVec - Set an auxiliary vector for region specified by the given label and value, and equation part
89589a2a23afSMatthew G. Knepley 
8959bb7acecfSBarry Smith   Not collective because auxilary vectors are not parallel
89609a2a23afSMatthew G. Knepley 
89619a2a23afSMatthew G. Knepley   Input Parameters:
8962bb7acecfSBarry Smith + dm     - The `DM`
8963bb7acecfSBarry Smith . label  - The `DMLabel`
89649a2a23afSMatthew G. Knepley . value  - The label value indicating the region
8965ac17215fSMatthew G. Knepley . part   - The equation part, or 0 if unused
8966bb7acecfSBarry Smith - aux    - The `Vec` holding auxiliary field data
89679a2a23afSMatthew G. Knepley 
89689a2a23afSMatthew G. Knepley   Level: advanced
89699a2a23afSMatthew G. Knepley 
8970bb7acecfSBarry Smith .seealso: `DMGetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMCopyAuxiliaryVec()`
89719a2a23afSMatthew G. Knepley @*/
8972d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec aux)
8973d71ae5a4SJacob Faibussowitsch {
89749a2a23afSMatthew G. Knepley   Vec             old;
89759a2a23afSMatthew G. Knepley   PetscHashAuxKey key;
89769a2a23afSMatthew G. Knepley 
89779a2a23afSMatthew G. Knepley   PetscFunctionBegin;
89789a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
89799a2a23afSMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
89809a2a23afSMatthew G. Knepley   key.label = label;
89819a2a23afSMatthew G. Knepley   key.value = value;
8982ac17215fSMatthew G. Knepley   key.part  = part;
89839566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxGet(dm->auxData, key, &old));
89849566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)aux));
89859566063dSJacob Faibussowitsch   PetscCall(PetscObjectDereference((PetscObject)old));
89869566063dSJacob Faibussowitsch   if (!aux) PetscCall(PetscHMapAuxDel(dm->auxData, key));
89879566063dSJacob Faibussowitsch   else PetscCall(PetscHMapAuxSet(dm->auxData, key, aux));
89889a2a23afSMatthew G. Knepley   PetscFunctionReturn(0);
89899a2a23afSMatthew G. Knepley }
89909a2a23afSMatthew G. Knepley 
89919a2a23afSMatthew G. Knepley /*@C
8992bb7acecfSBarry Smith   DMGetAuxiliaryLabels - Get the labels, values, and parts for all auxiliary vectors in this `DM`
89939a2a23afSMatthew G. Knepley 
89949a2a23afSMatthew G. Knepley   Not collective
89959a2a23afSMatthew G. Knepley 
89969a2a23afSMatthew G. Knepley   Input Parameter:
8997bb7acecfSBarry Smith . dm      - The `DM`
89989a2a23afSMatthew G. Knepley 
89999a2a23afSMatthew G. Knepley   Output Parameters:
9000bb7acecfSBarry Smith + labels  - The `DMLabel`s for each `Vec`
9001bb7acecfSBarry Smith . values  - The label values for each `Vec`
9002bb7acecfSBarry Smith - parts   - The equation parts for each `Vec`
90039a2a23afSMatthew G. Knepley 
9004bb7acecfSBarry Smith   Note:
9005bb7acecfSBarry Smith   The arrays passed in must be at least as large as `DMGetNumAuxiliaryVec()`.
90069a2a23afSMatthew G. Knepley 
90079a2a23afSMatthew G. Knepley   Level: advanced
90089a2a23afSMatthew G. Knepley 
9009bb7acecfSBarry Smith .seealso: `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMSetAuxiliaryVec()`, DMCopyAuxiliaryVec()`
90109a2a23afSMatthew G. Knepley @*/
9011d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryLabels(DM dm, DMLabel labels[], PetscInt values[], PetscInt parts[])
9012d71ae5a4SJacob Faibussowitsch {
90139a2a23afSMatthew G. Knepley   PetscHashAuxKey *keys;
90149a2a23afSMatthew G. Knepley   PetscInt         n, i, off = 0;
90159a2a23afSMatthew G. Knepley 
90169a2a23afSMatthew G. Knepley   PetscFunctionBegin;
90179a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
90189a2a23afSMatthew G. Knepley   PetscValidPointer(labels, 2);
9019dadcf809SJacob Faibussowitsch   PetscValidIntPointer(values, 3);
9020dadcf809SJacob Faibussowitsch   PetscValidIntPointer(parts, 4);
90219566063dSJacob Faibussowitsch   PetscCall(DMGetNumAuxiliaryVec(dm, &n));
90229566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &keys));
90239566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxGetKeys(dm->auxData, &off, keys));
90249371c9d4SSatish Balay   for (i = 0; i < n; ++i) {
90259371c9d4SSatish Balay     labels[i] = keys[i].label;
90269371c9d4SSatish Balay     values[i] = keys[i].value;
90279371c9d4SSatish Balay     parts[i]  = keys[i].part;
90289371c9d4SSatish Balay   }
90299566063dSJacob Faibussowitsch   PetscCall(PetscFree(keys));
90309a2a23afSMatthew G. Knepley   PetscFunctionReturn(0);
90319a2a23afSMatthew G. Knepley }
90329a2a23afSMatthew G. Knepley 
90339a2a23afSMatthew G. Knepley /*@
9034bb7acecfSBarry Smith   DMCopyAuxiliaryVec - Copy the auxiliary vector data on a `DM` to a new `DM`
90359a2a23afSMatthew G. Knepley 
90369a2a23afSMatthew G. Knepley   Not collective
90379a2a23afSMatthew G. Knepley 
90389a2a23afSMatthew G. Knepley   Input Parameter:
9039bb7acecfSBarry Smith . dm    - The `DM`
90409a2a23afSMatthew G. Knepley 
90419a2a23afSMatthew G. Knepley   Output Parameter:
9042bb7acecfSBarry Smith . dmNew - The new `DM`, now with the same auxiliary data
90439a2a23afSMatthew G. Knepley 
90449a2a23afSMatthew G. Knepley   Level: advanced
90459a2a23afSMatthew G. Knepley 
9046bb7acecfSBarry Smith   Note:
9047bb7acecfSBarry Smith   This is a shallow copy of the auxiliary vectors
9048bb7acecfSBarry Smith 
9049db781477SPatrick Sanan .seealso: `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`
90509a2a23afSMatthew G. Knepley @*/
9051d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyAuxiliaryVec(DM dm, DM dmNew)
9052d71ae5a4SJacob Faibussowitsch {
90539a2a23afSMatthew G. Knepley   PetscFunctionBegin;
90549a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
90559566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxDestroy(&dmNew->auxData));
90569566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxDuplicate(dm->auxData, &dmNew->auxData));
90579a2a23afSMatthew G. Knepley   PetscFunctionReturn(0);
90589a2a23afSMatthew G. Knepley }
9059b5a892a1SMatthew G. Knepley 
9060b5a892a1SMatthew G. Knepley /*@C
9061bb7acecfSBarry Smith   DMPolytopeMatchOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement
9062b5a892a1SMatthew G. Knepley 
9063b5a892a1SMatthew G. Knepley   Not collective
9064b5a892a1SMatthew G. Knepley 
9065b5a892a1SMatthew G. Knepley   Input Parameters:
9066bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9067b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces
9068b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces
9069b5a892a1SMatthew G. Knepley 
9070b5a892a1SMatthew G. Knepley   Output Parameters:
9071bb7acecfSBarry Smith + ornt  - The orientation (transformation) which will take the source arrangement to the target arrangement
9072b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found
9073b5a892a1SMatthew G. Knepley 
9074b5a892a1SMatthew G. Knepley   Level: advanced
9075b5a892a1SMatthew G. Knepley 
9076bb7acecfSBarry Smith   Note:
9077bb7acecfSBarry Smith   An arrangement is a face order combined with an orientation for each face
9078bb7acecfSBarry Smith 
9079bb7acecfSBarry Smith   Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangments(ct)`/2 to `DMPolytopeTypeGetNumArrangments(ct)`/2
9080bb7acecfSBarry Smith   that labels each arrangement (face ordering plus orientation for each face).
9081bb7acecfSBarry Smith 
9082bb7acecfSBarry Smith   See `DMPolytopeMatchVertexOrientation()` to find a new vertex orientation that takes the source vertex arrangement to the target vertex arrangement
9083bb7acecfSBarry Smith 
9084bb7acecfSBarry Smith .seealso: `DMPolytopeGetOrientation()`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetVertexOrientation()`
9085b5a892a1SMatthew G. Knepley @*/
9086d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt, PetscBool *found)
9087d71ae5a4SJacob Faibussowitsch {
9088b5a892a1SMatthew G. Knepley   const PetscInt cS = DMPolytopeTypeGetConeSize(ct);
9089b5a892a1SMatthew G. Knepley   const PetscInt nO = DMPolytopeTypeGetNumArrangments(ct) / 2;
9090b5a892a1SMatthew G. Knepley   PetscInt       o, c;
9091b5a892a1SMatthew G. Knepley 
9092b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
90939371c9d4SSatish Balay   if (!nO) {
90949371c9d4SSatish Balay     *ornt  = 0;
90959371c9d4SSatish Balay     *found = PETSC_TRUE;
90969371c9d4SSatish Balay     PetscFunctionReturn(0);
90979371c9d4SSatish Balay   }
9098b5a892a1SMatthew G. Knepley   for (o = -nO; o < nO; ++o) {
9099b5a892a1SMatthew G. Knepley     const PetscInt *arr = DMPolytopeTypeGetArrangment(ct, o);
9100b5a892a1SMatthew G. Knepley 
91019371c9d4SSatish Balay     for (c = 0; c < cS; ++c)
91029371c9d4SSatish Balay       if (sourceCone[arr[c * 2]] != targetCone[c]) break;
91039371c9d4SSatish Balay     if (c == cS) {
91049371c9d4SSatish Balay       *ornt = o;
91059371c9d4SSatish Balay       break;
91069371c9d4SSatish Balay     }
9107b5a892a1SMatthew G. Knepley   }
9108b5a892a1SMatthew G. Knepley   *found = o == nO ? PETSC_FALSE : PETSC_TRUE;
9109b5a892a1SMatthew G. Knepley   PetscFunctionReturn(0);
9110b5a892a1SMatthew G. Knepley }
9111b5a892a1SMatthew G. Knepley 
9112b5a892a1SMatthew G. Knepley /*@C
9113bb7acecfSBarry Smith   DMPolytopeGetOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement
9114b5a892a1SMatthew G. Knepley 
9115b5a892a1SMatthew G. Knepley   Not collective
9116b5a892a1SMatthew G. Knepley 
9117b5a892a1SMatthew G. Knepley   Input Parameters:
9118bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9119b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces
9120b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces
9121b5a892a1SMatthew G. Knepley 
9122b5a892a1SMatthew G. Knepley   Output Parameters:
9123bb7acecfSBarry Smith . ornt  - The orientation (transformation) which will take the source arrangement to the target arrangement
9124b5a892a1SMatthew G. Knepley 
9125b5a892a1SMatthew G. Knepley   Level: advanced
9126b5a892a1SMatthew G. Knepley 
9127bb7acecfSBarry Smith   Note:
9128bb7acecfSBarry Smith   This function is the same as `DMPolytopeMatchOrientation()` except it will generate an error if no suitable orientation can be found.
9129bb7acecfSBarry Smith 
9130bb7acecfSBarry Smith   Developer Note:
9131bb7acecfSBarry Smith   It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchOrientation()` and error if none is found
9132bb7acecfSBarry Smith 
9133bb7acecfSBarry Smith .seealso: `DMPolytopeType`, `DMPolytopeMatchOrientation()`, `DMPolytopeGetVertexOrientation()`, `DMPolytopeMatchVertexOrientation()`
9134b5a892a1SMatthew G. Knepley @*/
9135d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt)
9136d71ae5a4SJacob Faibussowitsch {
9137b5a892a1SMatthew G. Knepley   PetscBool found;
9138b5a892a1SMatthew G. Knepley 
9139b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
91409566063dSJacob Faibussowitsch   PetscCall(DMPolytopeMatchOrientation(ct, sourceCone, targetCone, ornt, &found));
91417a8be351SBarry Smith   PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]);
9142b5a892a1SMatthew G. Knepley   PetscFunctionReturn(0);
9143b5a892a1SMatthew G. Knepley }
9144b5a892a1SMatthew G. Knepley 
9145b5a892a1SMatthew G. Knepley /*@C
9146bb7acecfSBarry Smith   DMPolytopeMatchVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement
9147b5a892a1SMatthew G. Knepley 
9148b5a892a1SMatthew G. Knepley   Not collective
9149b5a892a1SMatthew G. Knepley 
9150b5a892a1SMatthew G. Knepley   Input Parameters:
9151bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9152b5a892a1SMatthew G. Knepley . sourceVert - The source arrangement of vertices
9153b5a892a1SMatthew G. Knepley - targetVert - The target arrangement of vertices
9154b5a892a1SMatthew G. Knepley 
9155b5a892a1SMatthew G. Knepley   Output Parameters:
9156bb7acecfSBarry Smith + ornt  - The orientation (transformation) which will take the source arrangement to the target arrangement
9157b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found
9158b5a892a1SMatthew G. Knepley 
9159b5a892a1SMatthew G. Knepley   Level: advanced
9160b5a892a1SMatthew G. Knepley 
9161bb7acecfSBarry Smith   Note:
9162bb7acecfSBarry Smith   An arrangement is a vertex order
9163bb7acecfSBarry Smith 
9164bb7acecfSBarry Smith   Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangments(ct)`/2 to `DMPolytopeTypeGetNumArrangments(ct)`/2
9165bb7acecfSBarry Smith   that labels each arrangement (vertex ordering).
9166bb7acecfSBarry Smith 
9167bb7acecfSBarry Smith   See `DMPolytopeMatchOrientation()` to find a new face orientation that takes the source face arrangement to the target face arrangement
9168bb7acecfSBarry Smith 
9169bb7acecfSBarry Smith .seealso: `DMPolytopeType`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchOrientation()`, `DMPolytopeTypeGetNumVertices()`, `DMPolytopeTypeGetVertexArrangment()`
9170b5a892a1SMatthew G. Knepley @*/
9171d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchVertexOrientation(DMPolytopeType ct, const PetscInt sourceVert[], const PetscInt targetVert[], PetscInt *ornt, PetscBool *found)
9172d71ae5a4SJacob Faibussowitsch {
9173b5a892a1SMatthew G. Knepley   const PetscInt cS = DMPolytopeTypeGetNumVertices(ct);
9174b5a892a1SMatthew G. Knepley   const PetscInt nO = DMPolytopeTypeGetNumArrangments(ct) / 2;
9175b5a892a1SMatthew G. Knepley   PetscInt       o, c;
9176b5a892a1SMatthew G. Knepley 
9177b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
91789371c9d4SSatish Balay   if (!nO) {
91799371c9d4SSatish Balay     *ornt  = 0;
91809371c9d4SSatish Balay     *found = PETSC_TRUE;
91819371c9d4SSatish Balay     PetscFunctionReturn(0);
91829371c9d4SSatish Balay   }
9183b5a892a1SMatthew G. Knepley   for (o = -nO; o < nO; ++o) {
9184b5a892a1SMatthew G. Knepley     const PetscInt *arr = DMPolytopeTypeGetVertexArrangment(ct, o);
9185b5a892a1SMatthew G. Knepley 
91869371c9d4SSatish Balay     for (c = 0; c < cS; ++c)
91879371c9d4SSatish Balay       if (sourceVert[arr[c]] != targetVert[c]) break;
91889371c9d4SSatish Balay     if (c == cS) {
91899371c9d4SSatish Balay       *ornt = o;
91909371c9d4SSatish Balay       break;
91919371c9d4SSatish Balay     }
9192b5a892a1SMatthew G. Knepley   }
9193b5a892a1SMatthew G. Knepley   *found = o == nO ? PETSC_FALSE : PETSC_TRUE;
9194b5a892a1SMatthew G. Knepley   PetscFunctionReturn(0);
9195b5a892a1SMatthew G. Knepley }
9196b5a892a1SMatthew G. Knepley 
9197b5a892a1SMatthew G. Knepley /*@C
9198bb7acecfSBarry Smith   DMPolytopeGetVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement
9199b5a892a1SMatthew G. Knepley 
9200b5a892a1SMatthew G. Knepley   Not collective
9201b5a892a1SMatthew G. Knepley 
9202b5a892a1SMatthew G. Knepley   Input Parameters:
9203bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9204b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of vertices
9205b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of vertices
9206b5a892a1SMatthew G. Knepley 
9207b5a892a1SMatthew G. Knepley   Output Parameters:
9208bb7acecfSBarry Smith . ornt  - The orientation (transformation) which will take the source arrangement to the target arrangement
9209b5a892a1SMatthew G. Knepley 
9210b5a892a1SMatthew G. Knepley   Level: advanced
9211b5a892a1SMatthew G. Knepley 
9212bb7acecfSBarry Smith   Note:
9213bb7acecfSBarry Smith   This function is the same as `DMPolytopeMatchVertexOrientation()` except it errors if not orientation is possible.
9214bb7acecfSBarry Smith 
9215bb7acecfSBarry Smith   Developer Note:
9216bb7acecfSBarry Smith   It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchVertexOrientation()` and error if none is found
9217bb7acecfSBarry Smith 
9218bb7acecfSBarry Smith .seealso: `DMPolytopeType`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetOrientation()`
9219b5a892a1SMatthew G. Knepley @*/
9220d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetVertexOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt)
9221d71ae5a4SJacob Faibussowitsch {
9222b5a892a1SMatthew G. Knepley   PetscBool found;
9223b5a892a1SMatthew G. Knepley 
9224b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
92259566063dSJacob Faibussowitsch   PetscCall(DMPolytopeMatchVertexOrientation(ct, sourceCone, targetCone, ornt, &found));
92267a8be351SBarry Smith   PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]);
9227b5a892a1SMatthew G. Knepley   PetscFunctionReturn(0);
9228b5a892a1SMatthew G. Knepley }
9229012bc364SMatthew G. Knepley 
9230012bc364SMatthew G. Knepley /*@C
9231012bc364SMatthew G. Knepley   DMPolytopeInCellTest - Check whether a point lies inside the reference cell of given type
9232012bc364SMatthew G. Knepley 
9233012bc364SMatthew G. Knepley   Not collective
9234012bc364SMatthew G. Knepley 
9235012bc364SMatthew G. Knepley   Input Parameters:
9236bb7acecfSBarry Smith + ct    - The `DMPolytopeType`
9237012bc364SMatthew G. Knepley - point - Coordinates of the point
9238012bc364SMatthew G. Knepley 
9239012bc364SMatthew G. Knepley   Output Parameters:
9240012bc364SMatthew G. Knepley . inside  - Flag indicating whether the point is inside the reference cell of given type
9241012bc364SMatthew G. Knepley 
9242012bc364SMatthew G. Knepley   Level: advanced
9243012bc364SMatthew G. Knepley 
9244bb7acecfSBarry Smith .seealso: `DM`, `DMPolytopeType`, `DMLocatePoints()`
9245012bc364SMatthew G. Knepley @*/
9246d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeInCellTest(DMPolytopeType ct, const PetscReal point[], PetscBool *inside)
9247d71ae5a4SJacob Faibussowitsch {
9248012bc364SMatthew G. Knepley   PetscReal sum = 0.0;
9249012bc364SMatthew G. Knepley   PetscInt  d;
9250012bc364SMatthew G. Knepley 
9251012bc364SMatthew G. Knepley   PetscFunctionBegin;
9252012bc364SMatthew G. Knepley   *inside = PETSC_TRUE;
9253012bc364SMatthew G. Knepley   switch (ct) {
9254012bc364SMatthew G. Knepley   case DM_POLYTOPE_TRIANGLE:
9255012bc364SMatthew G. Knepley   case DM_POLYTOPE_TETRAHEDRON:
9256012bc364SMatthew G. Knepley     for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) {
92579371c9d4SSatish Balay       if (point[d] < -1.0) {
92589371c9d4SSatish Balay         *inside = PETSC_FALSE;
92599371c9d4SSatish Balay         break;
92609371c9d4SSatish Balay       }
9261012bc364SMatthew G. Knepley       sum += point[d];
9262012bc364SMatthew G. Knepley     }
92639371c9d4SSatish Balay     if (sum > PETSC_SMALL) {
92649371c9d4SSatish Balay       *inside = PETSC_FALSE;
92659371c9d4SSatish Balay       break;
92669371c9d4SSatish Balay     }
9267012bc364SMatthew G. Knepley     break;
9268012bc364SMatthew G. Knepley   case DM_POLYTOPE_QUADRILATERAL:
9269012bc364SMatthew G. Knepley   case DM_POLYTOPE_HEXAHEDRON:
9270012bc364SMatthew G. Knepley     for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d)
92719371c9d4SSatish Balay       if (PetscAbsReal(point[d]) > 1. + PETSC_SMALL) {
92729371c9d4SSatish Balay         *inside = PETSC_FALSE;
9273012bc364SMatthew G. Knepley         break;
92749371c9d4SSatish Balay       }
92759371c9d4SSatish Balay     break;
9276d71ae5a4SJacob Faibussowitsch   default:
9277d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported polytope type %s", DMPolytopeTypes[ct]);
9278012bc364SMatthew G. Knepley   }
9279012bc364SMatthew G. Knepley   PetscFunctionReturn(0);
9280012bc364SMatthew G. Knepley }
9281