1d0295fc0SJunchao Zhang #include <petscvec.h> 2af0996ceSBarry Smith #include <petsc/private/dmimpl.h> /*I "petscdm.h" I*/ 3c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 4e6f8dbb6SToby Isaac #include <petsc/private/petscdsimpl.h> /*I "petscds.h" I*/ 53e922f36SToby Isaac #include <petscdmplex.h> 6f19dbd58SToby Isaac #include <petscdmfield.h> 70c312b8eSJed Brown #include <petscsf.h> 82764a2aaSMatthew G. Knepley #include <petscds.h> 947c6ae99SBarry Smith 10f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 11f918ec44SMatthew G. Knepley #include <petscfeceed.h> 12f918ec44SMatthew G. Knepley #endif 13f918ec44SMatthew G. Knepley 14cea3dcb8SSatish Balay #if !defined(PETSC_HAVE_WINDOWS_COMPILERS) 15cea3dcb8SSatish Balay #include <petsc/private/valgrind/memcheck.h> 1600d952a4SJed Brown #endif 1700d952a4SJed Brown 18732e2eb9SMatthew G Knepley PetscClassId DM_CLASSID; 19d67d17b1SMatthew G. Knepley PetscClassId DMLABEL_CLASSID; 205b8ffe73SMark Adams PetscLogEvent DM_Convert, DM_GlobalToLocal, DM_LocalToGlobal, DM_LocalToLocal, DM_LocatePoints, DM_Coarsen, DM_Refine, DM_CreateInterpolation, DM_CreateRestriction, DM_CreateInjection, DM_CreateMatrix, DM_CreateMassMatrix, DM_Load, DM_AdaptInterpolator; 2167a56275SMatthew G Knepley 22ea78f98cSLisandro Dalcin const char *const DMBoundaryTypes[] = {"NONE", "GHOSTED", "MIRROR", "PERIODIC", "TWIST", "DMBoundaryType", "DM_BOUNDARY_", NULL}; 23d1b3049bSMatthew G. Knepley const char *const DMBoundaryConditionTypes[] = {"INVALID", "ESSENTIAL", "NATURAL", "INVALID", "INVALID", "ESSENTIAL_FIELD", "NATURAL_FIELD", "INVALID", "INVALID", "ESSENTIAL_BD_FIELD", "NATURAL_RIEMANN", "DMBoundaryConditionType", "DM_BC_", NULL}; 249371c9d4SSatish Balay const char *const DMPolytopeTypes[] = {"vertex", "segment", "tensor_segment", "triangle", "quadrilateral", "tensor_quad", "tetrahedron", "hexahedron", "triangular_prism", "tensor_triangular_prism", "tensor_quadrilateral_prism", 259371c9d4SSatish Balay "pyramid", "FV_ghost_cell", "interior_ghost_cell", "unknown", "invalid", "DMPolytopeType", "DM_POLYTOPE_", NULL}; 262cbb9b06SVaclav Hapla const char *const DMCopyLabelsModes[] = {"replace", "keep", "fail", "DMCopyLabelsMode", "DM_COPY_LABELS_", NULL}; 2760c22052SBarry Smith 28a4121054SBarry Smith /*@ 29bb7acecfSBarry Smith DMCreate - Creates an empty `DM` object. `DM`s are the abstract objects in PETSc that mediate between meshes and discretizations and the 30bb7acecfSBarry Smith algebraic solvers, time integrators, and optimization algorithms. 31a4121054SBarry Smith 32d083f849SBarry Smith Collective 33a4121054SBarry Smith 34a4121054SBarry Smith Input Parameter: 35bb7acecfSBarry Smith . comm - The communicator for the `DM` object 36a4121054SBarry Smith 37a4121054SBarry Smith Output Parameter: 38bb7acecfSBarry Smith . dm - The `DM` object 39a4121054SBarry Smith 40a4121054SBarry Smith Level: beginner 41a4121054SBarry Smith 42bb7acecfSBarry Smith Notes: 43bb7acecfSBarry Smith See `DMType` for a brief summary of available `DM`. 44bb7acecfSBarry Smith 45bb7acecfSBarry Smith The type must then be set with `DMSetType()`. If you never call `DMSetType()` it will generate an 46bb7acecfSBarry Smith error when you try to use the dm. 47bb7acecfSBarry Smith 48bb7acecfSBarry Smith .seealso: `DMSetType()`, `DMType`, `DMDACreate()`, `DMDA`, `DMSLICED`, `DMCOMPOSITE`, `DMPLEX`, `DMMOAB`, `DMNETWORK` 49a4121054SBarry Smith @*/ 50d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreate(MPI_Comm comm, DM *dm) 51d71ae5a4SJacob Faibussowitsch { 52a4121054SBarry Smith DM v; 53e5e52638SMatthew G. Knepley PetscDS ds; 54a4121054SBarry Smith 55a4121054SBarry Smith PetscFunctionBegin; 561411c6eeSJed Brown PetscValidPointer(dm, 2); 570298fd71SBarry Smith *dm = NULL; 589566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 59a4121054SBarry Smith 609566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(v, DM_CLASSID, "DM", "Distribution Manager", "DM", comm, DMDestroy, DMView)); 61e7c4fc90SDmitry Karpeev 6262e5d2d2SJDBetteridge ((PetscObject)v)->non_cyclic_references = &DMCountNonCyclicReferences; 6362e5d2d2SJDBetteridge 6449be4549SMatthew G. Knepley v->setupcalled = PETSC_FALSE; 6549be4549SMatthew G. Knepley v->setfromoptionscalled = PETSC_FALSE; 660298fd71SBarry Smith v->ltogmap = NULL; 67a4ea9b21SRichard Tran Mills v->bind_below = 0; 681411c6eeSJed Brown v->bs = 1; 69171400e9SBarry Smith v->coloringtype = IS_COLORING_GLOBAL; 709566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sf)); 719566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sectionSF)); 72c58f1c22SToby Isaac v->labels = NULL; 7334aa8a36SMatthew G. Knepley v->adjacency[0] = PETSC_FALSE; 7434aa8a36SMatthew G. Knepley v->adjacency[1] = PETSC_TRUE; 75c58f1c22SToby Isaac v->depthLabel = NULL; 76ba2698f1SMatthew G. Knepley v->celltypeLabel = NULL; 771bb6d2a8SBarry Smith v->localSection = NULL; 781bb6d2a8SBarry Smith v->globalSection = NULL; 793b8ba7d1SJed Brown v->defaultConstraint.section = NULL; 803b8ba7d1SJed Brown v->defaultConstraint.mat = NULL; 8179769bd5SJed Brown v->defaultConstraint.bias = NULL; 826858538eSMatthew G. Knepley v->coordinates[0].dim = PETSC_DEFAULT; 836858538eSMatthew G. Knepley v->coordinates[1].dim = PETSC_DEFAULT; 846858538eSMatthew G. Knepley v->sparseLocalize = PETSC_TRUE; 8596173672SStefano Zampini v->dim = PETSC_DETERMINE; 86435a35e8SMatthew G Knepley { 87435a35e8SMatthew G Knepley PetscInt i; 88435a35e8SMatthew G Knepley for (i = 0; i < 10; ++i) { 890298fd71SBarry Smith v->nullspaceConstructors[i] = NULL; 90f9d4088aSMatthew G. Knepley v->nearnullspaceConstructors[i] = NULL; 91435a35e8SMatthew G Knepley } 92435a35e8SMatthew G Knepley } 939566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 949566063dSJacob Faibussowitsch PetscCall(DMSetRegionDS(v, NULL, NULL, ds)); 959566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 969566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxCreate(&v->auxData)); 9714f150ffSMatthew G. Knepley v->dmBC = NULL; 98a8fb8f29SToby Isaac v->coarseMesh = NULL; 99f4d763aaSMatthew G. Knepley v->outputSequenceNum = -1; 100cdb7a50dSMatthew G. Knepley v->outputSequenceVal = 0.0; 1019566063dSJacob Faibussowitsch PetscCall(DMSetVecType(v, VECSTANDARD)); 1029566063dSJacob Faibussowitsch PetscCall(DMSetMatType(v, MATAIJ)); 1034a7a4c06SLawrence Mitchell 1041411c6eeSJed Brown *dm = v; 105a4121054SBarry Smith PetscFunctionReturn(0); 106a4121054SBarry Smith } 107a4121054SBarry Smith 10838221697SMatthew G. Knepley /*@ 109bb7acecfSBarry Smith DMClone - Creates a `DM` object with the same topology as the original. 11038221697SMatthew G. Knepley 111d083f849SBarry Smith Collective 11238221697SMatthew G. Knepley 11338221697SMatthew G. Knepley Input Parameter: 114bb7acecfSBarry Smith . dm - The original `DM` object 11538221697SMatthew G. Knepley 11638221697SMatthew G. Knepley Output Parameter: 117bb7acecfSBarry Smith . newdm - The new `DM` object 11838221697SMatthew G. Knepley 11938221697SMatthew G. Knepley Level: beginner 12038221697SMatthew G. Knepley 1211cb8cacdSPatrick Sanan Notes: 122bb7acecfSBarry Smith For some `DM` implementations this is a shallow clone, the result of which may share (reference counted) information with its parent. For example, 123bb7acecfSBarry Smith `DMClone()` applied to a `DMPLEX` object will result in a new `DMPLEX` that shares the topology with the original `DMPLEX`. It does not 124bb7acecfSBarry Smith share the `PetscSection` of the original `DM`. 1251bb6d2a8SBarry Smith 126bb7acecfSBarry Smith The clone is considered set up if the original has been set up. 12789706ed2SPatrick Sanan 128bb7acecfSBarry Smith Use `DMConvert()` for a general way to create new `DM` from a given `DM` 129bb7acecfSBarry Smith 130bb7acecfSBarry Smith .seealso: `DMDestroy()`, `DMCreate()`, `DMSetType()`, `DMSetLocalSection()`, `DMSetGlobalSection()`, `DMPLEX`, `DMSetType()`, `DMConvert()` 1311bb6d2a8SBarry Smith 13238221697SMatthew G. Knepley @*/ 133d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClone(DM dm, DM *newdm) 134d71ae5a4SJacob Faibussowitsch { 13538221697SMatthew G. Knepley PetscSF sf; 13638221697SMatthew G. Knepley Vec coords; 13738221697SMatthew G. Knepley void *ctx; 1386858538eSMatthew G. Knepley PetscInt dim, cdim, i; 13938221697SMatthew G. Knepley 14038221697SMatthew G. Knepley PetscFunctionBegin; 14138221697SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14238221697SMatthew G. Knepley PetscValidPointer(newdm, 2); 1439566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), newdm)); 1449566063dSJacob Faibussowitsch PetscCall(DMCopyLabels(dm, *newdm, PETSC_COPY_VALUES, PETSC_TRUE, DM_COPY_LABELS_FAIL)); 145ddf8437dSMatthew G. Knepley (*newdm)->leveldown = dm->leveldown; 146ddf8437dSMatthew G. Knepley (*newdm)->levelup = dm->levelup; 147c8a6034eSMark (*newdm)->prealloc_only = dm->prealloc_only; 1489566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->vectype)); 1499566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*newdm)->vectype)); 1509566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->mattype)); 1519566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*newdm)->mattype)); 1529566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 1539566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*newdm, dim)); 154dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, clone, newdm); 1553f22bcbcSToby Isaac (*newdm)->setupcalled = dm->setupcalled; 1569566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 1579566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*newdm, sf)); 1589566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dm, &ctx)); 1599566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(*newdm, ctx)); 1606858538eSMatthew G. Knepley for (i = 0; i < 2; ++i) { 1616858538eSMatthew G. Knepley if (dm->coordinates[i].dm) { 162be4c1c3eSMatthew G. Knepley DM ncdm; 163be4c1c3eSMatthew G. Knepley PetscSection cs; 1645a0206caSToby Isaac PetscInt pEnd = -1, pEndMax = -1; 165be4c1c3eSMatthew G. Knepley 1666858538eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm->coordinates[i].dm, &cs)); 1679566063dSJacob Faibussowitsch if (cs) PetscCall(PetscSectionGetChart(cs, NULL, &pEnd)); 1689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(&pEnd, &pEndMax, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 1695a0206caSToby Isaac if (pEndMax >= 0) { 1706858538eSMatthew G. Knepley PetscCall(DMClone(dm->coordinates[i].dm, &ncdm)); 1716858538eSMatthew G. Knepley PetscCall(DMCopyDisc(dm->coordinates[i].dm, ncdm)); 1729566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(ncdm, cs)); 1736858538eSMatthew G. Knepley if (i) PetscCall(DMSetCellCoordinateDM(*newdm, ncdm)); 1746858538eSMatthew G. Knepley else PetscCall(DMSetCoordinateDM(*newdm, ncdm)); 1759566063dSJacob Faibussowitsch PetscCall(DMDestroy(&ncdm)); 176be4c1c3eSMatthew G. Knepley } 177be4c1c3eSMatthew G. Knepley } 1786858538eSMatthew G. Knepley } 1799566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 1809566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*newdm, cdim)); 1819566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coords)); 18238221697SMatthew G. Knepley if (coords) { 1839566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(*newdm, coords)); 18438221697SMatthew G. Knepley } else { 1859566063dSJacob Faibussowitsch PetscCall(DMGetCoordinates(dm, &coords)); 1869566063dSJacob Faibussowitsch if (coords) PetscCall(DMSetCoordinates(*newdm, coords)); 18738221697SMatthew G. Knepley } 1886858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinatesLocal(dm, &coords)); 1896858538eSMatthew G. Knepley if (coords) { 1906858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinatesLocal(*newdm, coords)); 1916858538eSMatthew G. Knepley } else { 1926858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinates(dm, &coords)); 1936858538eSMatthew G. Knepley if (coords) PetscCall(DMSetCellCoordinates(*newdm, coords)); 1946858538eSMatthew G. Knepley } 19590b157c4SStefano Zampini { 1964fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 1976858538eSMatthew G. Knepley 1984fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 1994fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*newdm, maxCell, Lstart, L)); 200c6b900c6SMatthew G. Knepley } 20134aa8a36SMatthew G. Knepley { 20234aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 20334aa8a36SMatthew G. Knepley 2049566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, &useCone, &useClosure)); 2059566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(*newdm, PETSC_DEFAULT, useCone, useClosure)); 20634aa8a36SMatthew G. Knepley } 20738221697SMatthew G. Knepley PetscFunctionReturn(0); 20838221697SMatthew G. Knepley } 20938221697SMatthew G. Knepley 2109a42bb27SBarry Smith /*@C 211bb7acecfSBarry Smith DMSetVecType - Sets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 2129a42bb27SBarry Smith 213d083f849SBarry Smith Logically Collective on da 2149a42bb27SBarry Smith 215147403d9SBarry Smith Input Parameters: 2169a42bb27SBarry Smith + da - initial distributed array 217bb7acecfSBarry Smith - ctype - the vector type, for example `VECSTANDARD`, `VECCUDA`, or `VECVIENNACL` 2189a42bb27SBarry Smith 2199a42bb27SBarry Smith Options Database: 220147403d9SBarry Smith . -dm_vec_type ctype - the type of vector to create 2219a42bb27SBarry Smith 2229a42bb27SBarry Smith Level: intermediate 2239a42bb27SBarry Smith 224bb7acecfSBarry Smith .seealso: `DMCreate()`, `DMDestroy()`, `DM`, `DMDAInterpolationType`, `VecType`, `DMGetVecType()`, `DMSetMatType()`, `DMGetMatType()`, 225bb7acecfSBarry Smith `VECSTANDARD`, `VECCUDA`, `VECVIENNACL`, `DMCreateLocalVector()`, `DMCreateGlobalVector()` 2269a42bb27SBarry Smith @*/ 227d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVecType(DM da, VecType ctype) 228d71ae5a4SJacob Faibussowitsch { 2299a42bb27SBarry Smith PetscFunctionBegin; 2309a42bb27SBarry Smith PetscValidHeaderSpecific(da, DM_CLASSID, 1); 2319566063dSJacob Faibussowitsch PetscCall(PetscFree(da->vectype)); 2329566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(ctype, (char **)&da->vectype)); 2339a42bb27SBarry Smith PetscFunctionReturn(0); 2349a42bb27SBarry Smith } 2359a42bb27SBarry Smith 236c0dedaeaSBarry Smith /*@C 237bb7acecfSBarry Smith DMGetVecType - Gets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 238c0dedaeaSBarry Smith 239d083f849SBarry Smith Logically Collective on da 240c0dedaeaSBarry Smith 241c0dedaeaSBarry Smith Input Parameter: 242c0dedaeaSBarry Smith . da - initial distributed array 243c0dedaeaSBarry Smith 244c0dedaeaSBarry Smith Output Parameter: 245c0dedaeaSBarry Smith . ctype - the vector type 246c0dedaeaSBarry Smith 247c0dedaeaSBarry Smith Level: intermediate 248c0dedaeaSBarry Smith 249db781477SPatrick Sanan .seealso: `DMCreate()`, `DMDestroy()`, `DM`, `DMDAInterpolationType`, `VecType`, `DMSetMatType()`, `DMGetMatType()`, `DMSetVecType()` 250c0dedaeaSBarry Smith @*/ 251d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetVecType(DM da, VecType *ctype) 252d71ae5a4SJacob Faibussowitsch { 253c0dedaeaSBarry Smith PetscFunctionBegin; 254c0dedaeaSBarry Smith PetscValidHeaderSpecific(da, DM_CLASSID, 1); 255c0dedaeaSBarry Smith *ctype = da->vectype; 256c0dedaeaSBarry Smith PetscFunctionReturn(0); 257c0dedaeaSBarry Smith } 258c0dedaeaSBarry Smith 2595f1ad066SMatthew G Knepley /*@ 260bb7acecfSBarry Smith VecGetDM - Gets the `DM` defining the data layout of the vector 2615f1ad066SMatthew G Knepley 2625f1ad066SMatthew G Knepley Not collective 2635f1ad066SMatthew G Knepley 2645f1ad066SMatthew G Knepley Input Parameter: 265bb7acecfSBarry Smith . v - The `Vec` 2665f1ad066SMatthew G Knepley 2675f1ad066SMatthew G Knepley Output Parameter: 268bb7acecfSBarry Smith . dm - The `DM` 2695f1ad066SMatthew G Knepley 2705f1ad066SMatthew G Knepley Level: intermediate 2715f1ad066SMatthew G Knepley 272bb7acecfSBarry Smith Note: 273bb7acecfSBarry Smith A `Vec` may not have a `DM` associated with it. 274bb7acecfSBarry Smith 275bb7acecfSBarry Smith .seealso: `DM`, `VecSetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 2765f1ad066SMatthew G Knepley @*/ 277d71ae5a4SJacob Faibussowitsch PetscErrorCode VecGetDM(Vec v, DM *dm) 278d71ae5a4SJacob Faibussowitsch { 2795f1ad066SMatthew G Knepley PetscFunctionBegin; 2805f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 2815f1ad066SMatthew G Knepley PetscValidPointer(dm, 2); 2829566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)v, "__PETSc_dm", (PetscObject *)dm)); 2835f1ad066SMatthew G Knepley PetscFunctionReturn(0); 2845f1ad066SMatthew G Knepley } 2855f1ad066SMatthew G Knepley 2865f1ad066SMatthew G Knepley /*@ 287bb7acecfSBarry Smith VecSetDM - Sets the `DM` defining the data layout of the vector. 2885f1ad066SMatthew G Knepley 2895f1ad066SMatthew G Knepley Not collective 2905f1ad066SMatthew G Knepley 2915f1ad066SMatthew G Knepley Input Parameters: 292bb7acecfSBarry Smith + v - The `Vec` 293bb7acecfSBarry Smith - dm - The `DM` 2945f1ad066SMatthew G Knepley 295bb7acecfSBarry Smith Note: 296bb7acecfSBarry Smith This is rarely used, generally one uses `DMGetLocalVector()` or `DMGetGlobalVector()` to create a vector associated with a given `DM` 297d9805387SMatthew G. Knepley 298bb7acecfSBarry Smith This is NOT the same as `DMCreateGlobalVector()` since it does not change the view methods or perform other customization, but merely sets the `DM` member. 299bb7acecfSBarry Smith 300bb7acecfSBarry Smith Level: developer 3015f1ad066SMatthew G Knepley 302db781477SPatrick Sanan .seealso: `VecGetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 3035f1ad066SMatthew G Knepley @*/ 304d71ae5a4SJacob Faibussowitsch PetscErrorCode VecSetDM(Vec v, DM dm) 305d71ae5a4SJacob Faibussowitsch { 3065f1ad066SMatthew G Knepley PetscFunctionBegin; 3075f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 308d7f50e27SLisandro Dalcin if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 3099566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)v, "__PETSc_dm", (PetscObject)dm)); 3105f1ad066SMatthew G Knepley PetscFunctionReturn(0); 3115f1ad066SMatthew G Knepley } 3125f1ad066SMatthew G Knepley 313521d9a4cSLisandro Dalcin /*@C 314bb7acecfSBarry Smith DMSetISColoringType - Sets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 3158f1509bcSBarry Smith 316d083f849SBarry Smith Logically Collective on dm 3178f1509bcSBarry Smith 3188f1509bcSBarry Smith Input Parameters: 319bb7acecfSBarry Smith + dm - the `DM` context 3208f1509bcSBarry Smith - ctype - the matrix type 3218f1509bcSBarry Smith 3228f1509bcSBarry Smith Options Database: 3238f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3248f1509bcSBarry Smith 3258f1509bcSBarry Smith Level: intermediate 3268f1509bcSBarry Smith 327db781477SPatrick Sanan .seealso: `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 328bb7acecfSBarry Smith `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3298f1509bcSBarry Smith @*/ 330d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetISColoringType(DM dm, ISColoringType ctype) 331d71ae5a4SJacob Faibussowitsch { 3328f1509bcSBarry Smith PetscFunctionBegin; 3338f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3348f1509bcSBarry Smith dm->coloringtype = ctype; 3358f1509bcSBarry Smith PetscFunctionReturn(0); 3368f1509bcSBarry Smith } 3378f1509bcSBarry Smith 3388f1509bcSBarry Smith /*@C 339bb7acecfSBarry Smith DMGetISColoringType - Gets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 340521d9a4cSLisandro Dalcin 341d083f849SBarry Smith Logically Collective on dm 342521d9a4cSLisandro Dalcin 343521d9a4cSLisandro Dalcin Input Parameter: 344bb7acecfSBarry Smith . dm - the `DM` context 3458f1509bcSBarry Smith 3468f1509bcSBarry Smith Output Parameter: 3478f1509bcSBarry Smith . ctype - the matrix type 3488f1509bcSBarry Smith 3498f1509bcSBarry Smith Options Database: 3508f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3518f1509bcSBarry Smith 3528f1509bcSBarry Smith Level: intermediate 3538f1509bcSBarry Smith 354db781477SPatrick Sanan .seealso: `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 355bb7acecfSBarry Smith `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3568f1509bcSBarry Smith @*/ 357d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetISColoringType(DM dm, ISColoringType *ctype) 358d71ae5a4SJacob Faibussowitsch { 3598f1509bcSBarry Smith PetscFunctionBegin; 3608f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3618f1509bcSBarry Smith *ctype = dm->coloringtype; 3628f1509bcSBarry Smith PetscFunctionReturn(0); 3638f1509bcSBarry Smith } 3648f1509bcSBarry Smith 3658f1509bcSBarry Smith /*@C 366bb7acecfSBarry Smith DMSetMatType - Sets the type of matrix created with `DMCreateMatrix()` 3678f1509bcSBarry Smith 368d083f849SBarry Smith Logically Collective on dm 3698f1509bcSBarry Smith 3708f1509bcSBarry Smith Input Parameters: 371bb7acecfSBarry Smith + dm - the `DM` context 372bb7acecfSBarry Smith - ctype - the matrix type, for example `MATMPIAIJ` 373521d9a4cSLisandro Dalcin 374521d9a4cSLisandro Dalcin Options Database: 375bb7acecfSBarry Smith . -dm_mat_type ctype - the type of the matrix to create, for example mpiaij 376521d9a4cSLisandro Dalcin 377521d9a4cSLisandro Dalcin Level: intermediate 378521d9a4cSLisandro Dalcin 379bb7acecfSBarry Smith .seealso: `MatType`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, `DMSetMatType()`, `DMGetMatType()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()` 380521d9a4cSLisandro Dalcin @*/ 381d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatType(DM dm, MatType ctype) 382d71ae5a4SJacob Faibussowitsch { 383521d9a4cSLisandro Dalcin PetscFunctionBegin; 384521d9a4cSLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3859566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->mattype)); 3869566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(ctype, (char **)&dm->mattype)); 387521d9a4cSLisandro Dalcin PetscFunctionReturn(0); 388521d9a4cSLisandro Dalcin } 389521d9a4cSLisandro Dalcin 390c0dedaeaSBarry Smith /*@C 391bb7acecfSBarry Smith DMGetMatType - Gets the type of matrix created with `DMCreateMatrix()` 392c0dedaeaSBarry Smith 393d083f849SBarry Smith Logically Collective on dm 394c0dedaeaSBarry Smith 395c0dedaeaSBarry Smith Input Parameter: 396bb7acecfSBarry Smith . dm - the `DM` context 397c0dedaeaSBarry Smith 398c0dedaeaSBarry Smith Output Parameter: 399c0dedaeaSBarry Smith . ctype - the matrix type 400c0dedaeaSBarry Smith 401c0dedaeaSBarry Smith Level: intermediate 402c0dedaeaSBarry Smith 403db781477SPatrick Sanan .seealso: `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMSetMatType()`, `DMSetMatType()`, `DMGetMatType()` 404c0dedaeaSBarry Smith @*/ 405d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetMatType(DM dm, MatType *ctype) 406d71ae5a4SJacob Faibussowitsch { 407c0dedaeaSBarry Smith PetscFunctionBegin; 408c0dedaeaSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 409c0dedaeaSBarry Smith *ctype = dm->mattype; 410c0dedaeaSBarry Smith PetscFunctionReturn(0); 411c0dedaeaSBarry Smith } 412c0dedaeaSBarry Smith 413c688c046SMatthew G Knepley /*@ 414bb7acecfSBarry Smith MatGetDM - Gets the `DM` defining the data layout of the matrix 415c688c046SMatthew G Knepley 416c688c046SMatthew G Knepley Not collective 417c688c046SMatthew G Knepley 418c688c046SMatthew G Knepley Input Parameter: 419bb7acecfSBarry Smith . A - The `Mat` 420c688c046SMatthew G Knepley 421c688c046SMatthew G Knepley Output Parameter: 422bb7acecfSBarry Smith . dm - The `DM` 423c688c046SMatthew G Knepley 424c688c046SMatthew G Knepley Level: intermediate 425c688c046SMatthew G Knepley 426bb7acecfSBarry Smith Note: 427bb7acecfSBarry Smith A matrix may not have a `DM` associated with it 428bb7acecfSBarry Smith 429bb7acecfSBarry Smith Developer Note: 430bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with the `Mat` through a `PetscObjectCompose()` operation 4318f1509bcSBarry Smith 432db781477SPatrick Sanan .seealso: `MatSetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 433c688c046SMatthew G Knepley @*/ 434d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDM(Mat A, DM *dm) 435d71ae5a4SJacob Faibussowitsch { 436c688c046SMatthew G Knepley PetscFunctionBegin; 437c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 438c688c046SMatthew G Knepley PetscValidPointer(dm, 2); 4399566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_dm", (PetscObject *)dm)); 440c688c046SMatthew G Knepley PetscFunctionReturn(0); 441c688c046SMatthew G Knepley } 442c688c046SMatthew G Knepley 443c688c046SMatthew G Knepley /*@ 444bb7acecfSBarry Smith MatSetDM - Sets the `DM` defining the data layout of the matrix 445c688c046SMatthew G Knepley 446c688c046SMatthew G Knepley Not collective 447c688c046SMatthew G Knepley 448c688c046SMatthew G Knepley Input Parameters: 449c688c046SMatthew G Knepley + A - The Mat 450c688c046SMatthew G Knepley - dm - The DM 451c688c046SMatthew G Knepley 452bb7acecfSBarry Smith Level: developer 453c688c046SMatthew G Knepley 454bb7acecfSBarry Smith Note: 455bb7acecfSBarry Smith This is rarely used in practice, rather `DMCreateMatrix()` is used to create a matrix associated with a particular `DM` 456bb7acecfSBarry Smith 457bb7acecfSBarry Smith Developer Note: 458bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with 459bb7acecfSBarry Smith the `Mat` through a `PetscObjectCompose()` operation 4608f1509bcSBarry Smith 461db781477SPatrick Sanan .seealso: `MatGetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 462c688c046SMatthew G Knepley @*/ 463d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetDM(Mat A, DM dm) 464d71ae5a4SJacob Faibussowitsch { 465c688c046SMatthew G Knepley PetscFunctionBegin; 466c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4678865f1eaSKarl Rupp if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 4689566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_dm", (PetscObject)dm)); 469c688c046SMatthew G Knepley PetscFunctionReturn(0); 470c688c046SMatthew G Knepley } 471c688c046SMatthew G Knepley 4729a42bb27SBarry Smith /*@C 473bb7acecfSBarry Smith DMSetOptionsPrefix - Sets the prefix prepended to all option names when searching through the options database 4749a42bb27SBarry Smith 475d083f849SBarry Smith Logically Collective on dm 4769a42bb27SBarry Smith 477d8d19677SJose E. Roman Input Parameters: 478bb7acecfSBarry Smith + da - the `DM` context 479bb7acecfSBarry Smith - prefix - the prefix to prepend 4809a42bb27SBarry Smith 4819a42bb27SBarry Smith Notes: 4829a42bb27SBarry Smith A hyphen (-) must NOT be given at the beginning of the prefix name. 4839a42bb27SBarry Smith The first character of all runtime options is AUTOMATICALLY the hyphen. 4849a42bb27SBarry Smith 4859a42bb27SBarry Smith Level: advanced 4869a42bb27SBarry Smith 487bb7acecfSBarry Smith .seealso: `PetscObjectSetOptionsPrefix()`, `DMSetFromOptions()` 4889a42bb27SBarry Smith @*/ 489d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOptionsPrefix(DM dm, const char prefix[]) 490d71ae5a4SJacob Faibussowitsch { 4919a42bb27SBarry Smith PetscFunctionBegin; 4929a42bb27SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4939566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, prefix)); 4941baa6e33SBarry Smith if (dm->sf) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sf, prefix)); 4951baa6e33SBarry Smith if (dm->sectionSF) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sectionSF, prefix)); 4969a42bb27SBarry Smith PetscFunctionReturn(0); 4979a42bb27SBarry Smith } 4989a42bb27SBarry Smith 49931697293SDave May /*@C 500bb7acecfSBarry Smith DMAppendOptionsPrefix - Appends an additional string to an already exising prefix used for searching for 501bb7acecfSBarry Smith `DM` options in the options database. 50231697293SDave May 503d083f849SBarry Smith Logically Collective on dm 50431697293SDave May 50531697293SDave May Input Parameters: 506bb7acecfSBarry Smith + dm - the `DM` context 507bb7acecfSBarry Smith - prefix - the string to append to the current prefix 50831697293SDave May 50931697293SDave May Notes: 510bb7acecfSBarry Smith If the `DM` does not currently have an options prefix then this value is used alone as the prefix as if `DMSetOptionsPrefix()` had been called. 51131697293SDave May A hyphen (-) must NOT be given at the beginning of the prefix name. 51231697293SDave May The first character of all runtime options is AUTOMATICALLY the hyphen. 51331697293SDave May 51431697293SDave May Level: advanced 51531697293SDave May 516bb7acecfSBarry Smith .seealso: `DMSetOptionsPrefix()`, `DMGetOptionsPrefix()`, `PetscObjectAppendOptionsPrefix()`, `DMSetFromOptions()` 51731697293SDave May @*/ 518d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAppendOptionsPrefix(DM dm, const char prefix[]) 519d71ae5a4SJacob Faibussowitsch { 52031697293SDave May PetscFunctionBegin; 52131697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5229566063dSJacob Faibussowitsch PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, prefix)); 52331697293SDave May PetscFunctionReturn(0); 52431697293SDave May } 52531697293SDave May 52631697293SDave May /*@C 52731697293SDave May DMGetOptionsPrefix - Gets the prefix used for searching for all 528bb7acecfSBarry Smith DM options in the options database. 52931697293SDave May 53031697293SDave May Not Collective 53131697293SDave May 53231697293SDave May Input Parameters: 533bb7acecfSBarry Smith . dm - the `DM` context 53431697293SDave May 53531697293SDave May Output Parameters: 53631697293SDave May . prefix - pointer to the prefix string used is returned 53731697293SDave May 538bb7acecfSBarry Smith Fortran Note: 53995452b02SPatrick Sanan On the fortran side, the user should pass in a string 'prefix' of 54031697293SDave May sufficient length to hold the prefix. 54131697293SDave May 54231697293SDave May Level: advanced 54331697293SDave May 544bb7acecfSBarry Smith .seealso: `DMSetOptionsPrefix()`, `DMAppendOptionsPrefix()`, `DMSetFromOptions()` 54531697293SDave May @*/ 546d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOptionsPrefix(DM dm, const char *prefix[]) 547d71ae5a4SJacob Faibussowitsch { 54831697293SDave May PetscFunctionBegin; 54931697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5509566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, prefix)); 55131697293SDave May PetscFunctionReturn(0); 55231697293SDave May } 55331697293SDave May 55462e5d2d2SJDBetteridge static PetscErrorCode DMCountNonCyclicReferences_Internal(DM dm, PetscBool recurseCoarse, PetscBool recurseFine, PetscInt *ncrefct) 555d71ae5a4SJacob Faibussowitsch { 5566eb26441SStefano Zampini PetscInt refct = ((PetscObject)dm)->refct; 55788bdff64SToby Isaac 55888bdff64SToby Isaac PetscFunctionBegin; 559aab5bcd8SJed Brown *ncrefct = 0; 56088bdff64SToby Isaac if (dm->coarseMesh && dm->coarseMesh->fineMesh == dm) { 56188bdff64SToby Isaac refct--; 56288bdff64SToby Isaac if (recurseCoarse) { 56388bdff64SToby Isaac PetscInt coarseCount; 56488bdff64SToby Isaac 56562e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->coarseMesh, PETSC_TRUE, PETSC_FALSE, &coarseCount)); 56688bdff64SToby Isaac refct += coarseCount; 56788bdff64SToby Isaac } 56888bdff64SToby Isaac } 56988bdff64SToby Isaac if (dm->fineMesh && dm->fineMesh->coarseMesh == dm) { 57088bdff64SToby Isaac refct--; 57188bdff64SToby Isaac if (recurseFine) { 57288bdff64SToby Isaac PetscInt fineCount; 57388bdff64SToby Isaac 57462e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->fineMesh, PETSC_FALSE, PETSC_TRUE, &fineCount)); 57588bdff64SToby Isaac refct += fineCount; 57688bdff64SToby Isaac } 57788bdff64SToby Isaac } 57888bdff64SToby Isaac *ncrefct = refct; 57988bdff64SToby Isaac PetscFunctionReturn(0); 58088bdff64SToby Isaac } 58188bdff64SToby Isaac 58262e5d2d2SJDBetteridge /* Generic wrapper for DMCountNonCyclicReferences_Internal() */ 58362e5d2d2SJDBetteridge PetscErrorCode DMCountNonCyclicReferences(PetscObject dm, PetscInt *ncrefct) 58462e5d2d2SJDBetteridge { 58562e5d2d2SJDBetteridge PetscFunctionBegin; 58662e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal((DM)dm, PETSC_TRUE, PETSC_TRUE, ncrefct)); 58762e5d2d2SJDBetteridge PetscFunctionReturn(0); 58862e5d2d2SJDBetteridge } 58962e5d2d2SJDBetteridge 590d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyLabelLinkList_Internal(DM dm) 591d71ae5a4SJacob Faibussowitsch { 5925d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 593354557abSToby Isaac 594354557abSToby Isaac PetscFunctionBegin; 595354557abSToby Isaac /* destroy the labels */ 596354557abSToby Isaac while (next) { 597354557abSToby Isaac DMLabelLink tmp = next->next; 598354557abSToby Isaac 5995d80c0bfSVaclav Hapla if (next->label == dm->depthLabel) dm->depthLabel = NULL; 600ba2698f1SMatthew G. Knepley if (next->label == dm->celltypeLabel) dm->celltypeLabel = NULL; 6019566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 6029566063dSJacob Faibussowitsch PetscCall(PetscFree(next)); 603354557abSToby Isaac next = tmp; 604354557abSToby Isaac } 6055d80c0bfSVaclav Hapla dm->labels = NULL; 606354557abSToby Isaac PetscFunctionReturn(0); 607354557abSToby Isaac } 608354557abSToby Isaac 609d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyCoordinates_Private(DMCoordinates *c) 610d71ae5a4SJacob Faibussowitsch { 6116858538eSMatthew G. Knepley PetscFunctionBegin; 6126858538eSMatthew G. Knepley c->dim = PETSC_DEFAULT; 6136858538eSMatthew G. Knepley PetscCall(DMDestroy(&c->dm)); 6146858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->x)); 6156858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->xl)); 6166858538eSMatthew G. Knepley PetscCall(DMFieldDestroy(&c->field)); 6176858538eSMatthew G. Knepley PetscFunctionReturn(0); 6186858538eSMatthew G. Knepley } 6196858538eSMatthew G. Knepley 6201fb7b255SJunchao Zhang /*@C 621bb7acecfSBarry Smith DMDestroy - Destroys a `DM`. 62247c6ae99SBarry Smith 623d083f849SBarry Smith Collective on dm 62447c6ae99SBarry Smith 62547c6ae99SBarry Smith Input Parameter: 626bb7acecfSBarry Smith . dm - the `DM` object to destroy 62747c6ae99SBarry Smith 62847c6ae99SBarry Smith Level: developer 62947c6ae99SBarry Smith 630bb7acecfSBarry Smith .seealso: `DMCreate()`, `DMType`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 63147c6ae99SBarry Smith 63247c6ae99SBarry Smith @*/ 633d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroy(DM *dm) 634d71ae5a4SJacob Faibussowitsch { 6356eb26441SStefano Zampini PetscInt cnt; 636dfe15315SJed Brown DMNamedVecLink nlink, nnext; 63747c6ae99SBarry Smith 63847c6ae99SBarry Smith PetscFunctionBegin; 6396bf464f9SBarry Smith if (!*dm) PetscFunctionReturn(0); 6406bf464f9SBarry Smith PetscValidHeaderSpecific((*dm), DM_CLASSID, 1); 64187e657c6SBarry Smith 64288bdff64SToby Isaac /* count all non-cyclic references in the doubly-linked list of coarse<->fine meshes */ 64362e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(*dm, PETSC_TRUE, PETSC_TRUE, &cnt)); 64488bdff64SToby Isaac --((PetscObject)(*dm))->refct; 6459371c9d4SSatish Balay if (--cnt > 0) { 6469371c9d4SSatish Balay *dm = NULL; 6479371c9d4SSatish Balay PetscFunctionReturn(0); 6489371c9d4SSatish Balay } 6496bf464f9SBarry Smith if (((PetscObject)(*dm))->refct < 0) PetscFunctionReturn(0); 6506bf464f9SBarry Smith ((PetscObject)(*dm))->refct = 0; 6516eb26441SStefano Zampini 6529566063dSJacob Faibussowitsch PetscCall(DMClearGlobalVectors(*dm)); 6539566063dSJacob Faibussowitsch PetscCall(DMClearLocalVectors(*dm)); 6546eb26441SStefano Zampini 655f490541aSPeter Brune nnext = (*dm)->namedglobal; 6560298fd71SBarry Smith (*dm)->namedglobal = NULL; 657f490541aSPeter Brune for (nlink = nnext; nlink; nlink = nnext) { /* Destroy the named vectors */ 6582348bcf4SPeter Brune nnext = nlink->next; 6597a8be351SBarry Smith PetscCheck(nlink->status == DMVEC_STATUS_IN, ((PetscObject)*dm)->comm, PETSC_ERR_ARG_WRONGSTATE, "DM still has Vec named '%s' checked out", nlink->name); 6609566063dSJacob Faibussowitsch PetscCall(PetscFree(nlink->name)); 6619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&nlink->X)); 6629566063dSJacob Faibussowitsch PetscCall(PetscFree(nlink)); 6632348bcf4SPeter Brune } 664f490541aSPeter Brune nnext = (*dm)->namedlocal; 6650298fd71SBarry Smith (*dm)->namedlocal = NULL; 666f490541aSPeter Brune for (nlink = nnext; nlink; nlink = nnext) { /* Destroy the named local vectors */ 667f490541aSPeter Brune nnext = nlink->next; 6687a8be351SBarry Smith PetscCheck(nlink->status == DMVEC_STATUS_IN, ((PetscObject)*dm)->comm, PETSC_ERR_ARG_WRONGSTATE, "DM still has Vec named '%s' checked out", nlink->name); 6699566063dSJacob Faibussowitsch PetscCall(PetscFree(nlink->name)); 6709566063dSJacob Faibussowitsch PetscCall(VecDestroy(&nlink->X)); 6719566063dSJacob Faibussowitsch PetscCall(PetscFree(nlink)); 672f490541aSPeter Brune } 6732348bcf4SPeter Brune 674b17ce1afSJed Brown /* Destroy the list of hooks */ 675c833c3b5SJed Brown { 676c833c3b5SJed Brown DMCoarsenHookLink link, next; 677b17ce1afSJed Brown for (link = (*dm)->coarsenhook; link; link = next) { 678b17ce1afSJed Brown next = link->next; 6799566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 680b17ce1afSJed Brown } 6810298fd71SBarry Smith (*dm)->coarsenhook = NULL; 682c833c3b5SJed Brown } 683c833c3b5SJed Brown { 684c833c3b5SJed Brown DMRefineHookLink link, next; 685c833c3b5SJed Brown for (link = (*dm)->refinehook; link; link = next) { 686c833c3b5SJed Brown next = link->next; 6879566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 688c833c3b5SJed Brown } 6890298fd71SBarry Smith (*dm)->refinehook = NULL; 690c833c3b5SJed Brown } 691be081cd6SPeter Brune { 692be081cd6SPeter Brune DMSubDomainHookLink link, next; 693be081cd6SPeter Brune for (link = (*dm)->subdomainhook; link; link = next) { 694be081cd6SPeter Brune next = link->next; 6959566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 696be081cd6SPeter Brune } 6970298fd71SBarry Smith (*dm)->subdomainhook = NULL; 698be081cd6SPeter Brune } 699baf369e7SPeter Brune { 700baf369e7SPeter Brune DMGlobalToLocalHookLink link, next; 701baf369e7SPeter Brune for (link = (*dm)->gtolhook; link; link = next) { 702baf369e7SPeter Brune next = link->next; 7039566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 704baf369e7SPeter Brune } 7050298fd71SBarry Smith (*dm)->gtolhook = NULL; 706baf369e7SPeter Brune } 707d4d07f1eSToby Isaac { 708d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, next; 709d4d07f1eSToby Isaac for (link = (*dm)->ltoghook; link; link = next) { 710d4d07f1eSToby Isaac next = link->next; 7119566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 712d4d07f1eSToby Isaac } 713d4d07f1eSToby Isaac (*dm)->ltoghook = NULL; 714d4d07f1eSToby Isaac } 715aa1993deSMatthew G Knepley /* Destroy the work arrays */ 716aa1993deSMatthew G Knepley { 717aa1993deSMatthew G Knepley DMWorkLink link, next; 7187a8be351SBarry Smith PetscCheck(!(*dm)->workout, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Work array still checked out"); 719aa1993deSMatthew G Knepley for (link = (*dm)->workin; link; link = next) { 720aa1993deSMatthew G Knepley next = link->next; 7219566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 7229566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 723aa1993deSMatthew G Knepley } 7240298fd71SBarry Smith (*dm)->workin = NULL; 725aa1993deSMatthew G Knepley } 726c58f1c22SToby Isaac /* destroy the labels */ 7279566063dSJacob Faibussowitsch PetscCall(DMDestroyLabelLinkList_Internal(*dm)); 728f4cdcedcSVaclav Hapla /* destroy the fields */ 7299566063dSJacob Faibussowitsch PetscCall(DMClearFields(*dm)); 730f4cdcedcSVaclav Hapla /* destroy the boundaries */ 731e6f8dbb6SToby Isaac { 732e6f8dbb6SToby Isaac DMBoundary next = (*dm)->boundary; 733e6f8dbb6SToby Isaac while (next) { 734e6f8dbb6SToby Isaac DMBoundary b = next; 735e6f8dbb6SToby Isaac 736e6f8dbb6SToby Isaac next = b->next; 7379566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 738e6f8dbb6SToby Isaac } 739e6f8dbb6SToby Isaac } 740b17ce1afSJed Brown 7419566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmksp)); 7429566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmsnes)); 7439566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmts)); 74452536dc3SBarry Smith 74548a46eb9SPierre Jolivet if ((*dm)->ctx && (*dm)->ctxdestroy) PetscCall((*(*dm)->ctxdestroy)(&(*dm)->ctx)); 7469566063dSJacob Faibussowitsch PetscCall(MatFDColoringDestroy(&(*dm)->fd)); 7479566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&(*dm)->ltogmap)); 7489566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->vectype)); 7499566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->mattype)); 75088ed4aceSMatthew G Knepley 7519566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->localSection)); 7529566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->globalSection)); 7539566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&(*dm)->map)); 7549566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->defaultConstraint.section)); 7559566063dSJacob Faibussowitsch PetscCall(MatDestroy(&(*dm)->defaultConstraint.mat)); 7569566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sf)); 7579566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sectionSF)); 758736995cdSBlaise Bourdin if ((*dm)->useNatural) { 75948a46eb9SPierre Jolivet if ((*dm)->sfNatural) PetscCall(PetscSFDestroy(&(*dm)->sfNatural)); 7609566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)(*dm)->sfMigration)); 761736995cdSBlaise Bourdin } 7629a2a23afSMatthew G. Knepley { 7639a2a23afSMatthew G. Knepley Vec *auxData; 7649a2a23afSMatthew G. Knepley PetscInt n, i, off = 0; 7659a2a23afSMatthew G. Knepley 7669566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetSize((*dm)->auxData, &n)); 7679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &auxData)); 7689566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetVals((*dm)->auxData, &off, auxData)); 7699566063dSJacob Faibussowitsch for (i = 0; i < n; ++i) PetscCall(VecDestroy(&auxData[i])); 7709566063dSJacob Faibussowitsch PetscCall(PetscFree(auxData)); 7719566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDestroy(&(*dm)->auxData)); 7729a2a23afSMatthew G. Knepley } 77348a46eb9SPierre Jolivet if ((*dm)->coarseMesh && (*dm)->coarseMesh->fineMesh == *dm) PetscCall(DMSetFineDM((*dm)->coarseMesh, NULL)); 7746eb26441SStefano Zampini 7759566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->coarseMesh)); 77648a46eb9SPierre Jolivet if ((*dm)->fineMesh && (*dm)->fineMesh->coarseMesh == *dm) PetscCall(DMSetCoarseDM((*dm)->fineMesh, NULL)); 7779566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->fineMesh)); 7784fb89dddSMatthew G. Knepley PetscCall(PetscFree((*dm)->Lstart)); 7799566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->L)); 7809566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->maxCell)); 7816858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[0])); 7826858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[1])); 7839566063dSJacob Faibussowitsch if ((*dm)->transformDestroy) PetscCall((*(*dm)->transformDestroy)(*dm, (*dm)->transformCtx)); 7849566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->transformDM)); 7859566063dSJacob Faibussowitsch PetscCall(VecDestroy(&(*dm)->transform)); 7866636e97aSMatthew G Knepley 7879566063dSJacob Faibussowitsch PetscCall(DMClearDS(*dm)); 7889566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->dmBC)); 789e04113cfSBarry Smith /* if memory was published with SAWs then destroy it */ 7909566063dSJacob Faibussowitsch PetscCall(PetscObjectSAWsViewOff((PetscObject)*dm)); 791732e2eb9SMatthew G Knepley 79248a46eb9SPierre Jolivet if ((*dm)->ops->destroy) PetscCall((*(*dm)->ops->destroy)(*dm)); 7939566063dSJacob Faibussowitsch PetscCall(DMMonitorCancel(*dm)); 794f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 7959566063dSJacob Faibussowitsch PetscCallCEED(CeedElemRestrictionDestroy(&(*dm)->ceedERestrict)); 7969566063dSJacob Faibussowitsch PetscCallCEED(CeedDestroy(&(*dm)->ceed)); 797f918ec44SMatthew G. Knepley #endif 798435a35e8SMatthew G Knepley /* We do not destroy (*dm)->data here so that we can reference count backend objects */ 7999566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(dm)); 80047c6ae99SBarry Smith PetscFunctionReturn(0); 80147c6ae99SBarry Smith } 80247c6ae99SBarry Smith 803d7bf68aeSBarry Smith /*@ 804bb7acecfSBarry Smith DMSetUp - sets up the data structures inside a `DM` object 805d7bf68aeSBarry Smith 806d083f849SBarry Smith Collective on dm 807d7bf68aeSBarry Smith 808d7bf68aeSBarry Smith Input Parameter: 809bb7acecfSBarry Smith . dm - the `DM` object to setup 810d7bf68aeSBarry Smith 811bb7acecfSBarry Smith Level: intermediate 812d7bf68aeSBarry Smith 813bb7acecfSBarry Smith Note: 814bb7acecfSBarry Smith This is usually called after various parameter setting operations and `DMSetFromOptions()` are called on the `DM` 815bb7acecfSBarry Smith 816bb7acecfSBarry Smith .seealso: `DM`, `DMCreate()`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 817d7bf68aeSBarry Smith 818d7bf68aeSBarry Smith @*/ 819d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUp(DM dm) 820d71ae5a4SJacob Faibussowitsch { 821d7bf68aeSBarry Smith PetscFunctionBegin; 822171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8238387afaaSJed Brown if (dm->setupcalled) PetscFunctionReturn(0); 824dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setup); 8258387afaaSJed Brown dm->setupcalled = PETSC_TRUE; 826d7bf68aeSBarry Smith PetscFunctionReturn(0); 827d7bf68aeSBarry Smith } 828d7bf68aeSBarry Smith 829d7bf68aeSBarry Smith /*@ 830bb7acecfSBarry Smith DMSetFromOptions - sets parameters in a `DM` from the options database 831d7bf68aeSBarry Smith 832d083f849SBarry Smith Collective on dm 833d7bf68aeSBarry Smith 834d7bf68aeSBarry Smith Input Parameter: 835bb7acecfSBarry Smith . dm - the `DM` object to set options for 836d7bf68aeSBarry Smith 837732e2eb9SMatthew G Knepley Options Database: 838bb7acecfSBarry Smith + -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 839bb7acecfSBarry Smith . -dm_vec_type <type> - type of vector to create inside `DM` 840bb7acecfSBarry Smith . -dm_mat_type <type> - type of matrix to create inside `DM` 841a4ea9b21SRichard Tran Mills . -dm_is_coloring_type - <global or local> 842bb7acecfSBarry Smith - -dm_bind_below <n> - bind (force execution on CPU) for `Vec` and `Mat` objects with local size (number of vector entries or matrix rows) below n; currently only supported for `DMDA` 843732e2eb9SMatthew G Knepley 8449318fe57SMatthew G. Knepley DMPLEX Specific creation options 8459318fe57SMatthew G. Knepley + -dm_plex_filename <str> - File containing a mesh 8469318fe57SMatthew G. Knepley . -dm_plex_boundary_filename <str> - File containing a mesh boundary 847cd7e8a5eSksagiyam . -dm_plex_name <str> - Name of the mesh in the file 848bb7acecfSBarry Smith . -dm_plex_shape <shape> - The domain shape, such as `DM_SHAPE_BOX`, `DM_SHAPE_SPHERE`, etc. 8499318fe57SMatthew G. Knepley . -dm_plex_cell <ct> - Cell shape 8509318fe57SMatthew G. Knepley . -dm_plex_reference_cell_domain <bool> - Use a reference cell domain 8519318fe57SMatthew G. Knepley . -dm_plex_dim <dim> - Set the topological dimension 852bb7acecfSBarry Smith . -dm_plex_simplex <bool> - `PETSC_TRUE` for simplex elements, `PETSC_FALSE` for tensor elements 853bb7acecfSBarry Smith . -dm_plex_interpolate <bool> - `PETSC_TRUE` turns on topological interpolation (creating edges and faces) 8549318fe57SMatthew G. Knepley . -dm_plex_scale <sc> - Scale factor for mesh coordinates 8559318fe57SMatthew G. Knepley . -dm_plex_box_faces <m,n,p> - Number of faces along each dimension 8569318fe57SMatthew G. Knepley . -dm_plex_box_lower <x,y,z> - Specify lower-left-bottom coordinates for the box 8579318fe57SMatthew G. Knepley . -dm_plex_box_upper <x,y,z> - Specify upper-right-top coordinates for the box 858bb7acecfSBarry Smith . -dm_plex_box_bd <bx,by,bz> - Specify the `DMBoundaryType `for each direction 8599318fe57SMatthew G. Knepley . -dm_plex_sphere_radius <r> - The sphere radius 8609318fe57SMatthew G. Knepley . -dm_plex_ball_radius <r> - Radius of the ball 8619318fe57SMatthew G. Knepley . -dm_plex_cylinder_bd <bz> - Boundary type in the z direction 8629318fe57SMatthew G. Knepley . -dm_plex_cylinder_num_wedges <n> - Number of wedges around the cylinder 863bdf63967SMatthew G. Knepley . -dm_plex_reorder <order> - Reorder the mesh using the specified algorithm 8649318fe57SMatthew G. Knepley . -dm_refine_pre <n> - The number of refinements before distribution 8659318fe57SMatthew G. Knepley . -dm_refine_uniform_pre <bool> - Flag for uniform refinement before distribution 8669318fe57SMatthew G. Knepley . -dm_refine_volume_limit_pre <v> - The maximum cell volume after refinement before distribution 8679318fe57SMatthew G. Knepley . -dm_refine <n> - The number of refinements after distribution 868bdf63967SMatthew G. Knepley . -dm_extrude <l> - Activate extrusion and specify the number of layers to extrude 869d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thickness <t> - The total thickness of extruded layers 870d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_use_tensor <bool> - Use tensor cells when extruding 871d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_symmetric <bool> - Extrude layers symmetrically about the surface 872d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_normal <n0,...,nd> - Specify the extrusion direction 873d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thicknesses <t0,...,tl> - Specify thickness of each layer 874909dfd52SMatthew G. Knepley . -dm_plex_create_fv_ghost_cells - Flag to create finite volume ghost cells on the boundary 875909dfd52SMatthew G. Knepley . -dm_plex_fv_ghost_cells_label <name> - Label name for ghost cells boundary 8769318fe57SMatthew G. Knepley . -dm_distribute <bool> - Flag to redistribute a mesh among processes 8779318fe57SMatthew G. Knepley . -dm_distribute_overlap <n> - The size of the overlap halo 8789318fe57SMatthew G. Knepley . -dm_plex_adj_cone <bool> - Set adjacency direction 8799318fe57SMatthew G. Knepley - -dm_plex_adj_closure <bool> - Set adjacency size 8809318fe57SMatthew G. Knepley 881384a6580SVaclav Hapla DMPLEX Specific Checks 882bb7acecfSBarry Smith + -dm_plex_check_symmetry - Check that the adjacency information in the mesh is symmetric - `DMPlexCheckSymmetry()` 883bb7acecfSBarry Smith . -dm_plex_check_skeleton - Check that each cell has the correct number of vertices (only for homogeneous simplex or tensor meshes) - `DMPlexCheckSkeleton()` 884bb7acecfSBarry Smith . -dm_plex_check_faces - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type - `DMPlexCheckFaces()` 885bb7acecfSBarry Smith . -dm_plex_check_geometry - Check that cells have positive volume - `DMPlexCheckGeometry()` 886bb7acecfSBarry Smith . -dm_plex_check_pointsf - Check some necessary conditions for `PointSF` - `DMPlexCheckPointSF()` 887bb7acecfSBarry Smith . -dm_plex_check_interface_cones - Check points on inter-partition interfaces have conforming order of cone points - `DMPlexCheckInterfaceCones()` 888384a6580SVaclav Hapla - -dm_plex_check_all - Perform all the checks above 889d7bf68aeSBarry Smith 89095eb5ee5SVaclav Hapla Level: intermediate 89195eb5ee5SVaclav Hapla 892bb7acecfSBarry Smith .seealso: `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 893bb7acecfSBarry Smith `DMPlexCheckSymmetry()`, `DMPlexCheckSkeleton()`, `DMPlexCheckFaces()`, `DMPlexCheckGeometry()`, `DMPlexCheckPointSF()`, `DMPlexCheckInterfaceCones()`, 894bb7acecfSBarry Smith `DMSetOptionsPrefix()`, `DM`, `DMType`, `DMPLEX`, `DMDA` 895d7bf68aeSBarry Smith 896d7bf68aeSBarry Smith @*/ 897d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFromOptions(DM dm) 898d71ae5a4SJacob Faibussowitsch { 8997781c08eSBarry Smith char typeName[256]; 900ca266f36SBarry Smith PetscBool flg; 901d7bf68aeSBarry Smith 902d7bf68aeSBarry Smith PetscFunctionBegin; 903171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 90449be4549SMatthew G. Knepley dm->setfromoptionscalled = PETSC_TRUE; 9059566063dSJacob Faibussowitsch if (dm->sf) PetscCall(PetscSFSetFromOptions(dm->sf)); 9069566063dSJacob Faibussowitsch if (dm->sectionSF) PetscCall(PetscSFSetFromOptions(dm->sectionSF)); 907*dd4c3f67SMatthew G. Knepley if (dm->coordinates[0].dm) PetscCall(DMSetFromOptions(dm->coordinates[0].dm)); 908d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)dm); 9099566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_preallocate_only", "only preallocate matrix, but do not set column indices", "DMSetMatrixPreallocateOnly", dm->prealloc_only, &dm->prealloc_only, NULL)); 9109566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_vec_type", "Vector type used for created vectors", "DMSetVecType", VecList, dm->vectype, typeName, 256, &flg)); 9111baa6e33SBarry Smith if (flg) PetscCall(DMSetVecType(dm, typeName)); 9129566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_mat_type", "Matrix type used for created matrices", "DMSetMatType", MatList, dm->mattype ? dm->mattype : typeName, typeName, sizeof(typeName), &flg)); 9131baa6e33SBarry Smith if (flg) PetscCall(DMSetMatType(dm, typeName)); 9149566063dSJacob Faibussowitsch PetscCall(PetscOptionsEnum("-dm_is_coloring_type", "Global or local coloring of Jacobian", "DMSetISColoringType", ISColoringTypes, (PetscEnum)dm->coloringtype, (PetscEnum *)&dm->coloringtype, NULL)); 9159566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-dm_bind_below", "Set the size threshold (in entries) below which the Vec is bound to the CPU", "VecBindToCPU", dm->bind_below, &dm->bind_below, &flg)); 916dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setfromoptions, PetscOptionsObject); 917f9ba7244SBarry Smith /* process any options handlers added with PetscObjectAddOptionsHandler() */ 918dbbe0bcdSBarry Smith PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)dm, PetscOptionsObject)); 919d0609cedSBarry Smith PetscOptionsEnd(); 920d7bf68aeSBarry Smith PetscFunctionReturn(0); 921d7bf68aeSBarry Smith } 922d7bf68aeSBarry Smith 923fc9bc008SSatish Balay /*@C 924bb7acecfSBarry Smith DMViewFromOptions - View a `DM` in a particular way based on a request in the options database 925fe2efc57SMark 926bb7acecfSBarry Smith Collective on dm 927fe2efc57SMark 928fe2efc57SMark Input Parameters: 929bb7acecfSBarry Smith + dm - the `DM` object 930bb7acecfSBarry Smith . obj - optional object that provides the prefix for the options database (if NULL then the prefix in obj is used) 931bb7acecfSBarry Smith - optionname - option string that is used to activate viewing 932fe2efc57SMark 933fe2efc57SMark Level: intermediate 934bb7acecfSBarry Smith 935bb7acecfSBarry Smith Note: 936bb7acecfSBarry Smith See `PetscObjectViewFromOptions()` for a list of values that can be provided in the options database to determine how the `DM` is viewed 937bb7acecfSBarry Smith 938bb7acecfSBarry Smith .seealso: `DM`, `DMView()`, `PetscObjectViewFromOptions()`, `DMCreate()`, `PetscObjectViewFromOptions()` 939fe2efc57SMark @*/ 940d71ae5a4SJacob Faibussowitsch PetscErrorCode DMViewFromOptions(DM dm, PetscObject obj, const char name[]) 941d71ae5a4SJacob Faibussowitsch { 942fe2efc57SMark PetscFunctionBegin; 943fe2efc57SMark PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9449566063dSJacob Faibussowitsch PetscCall(PetscObjectViewFromOptions((PetscObject)dm, obj, name)); 945fe2efc57SMark PetscFunctionReturn(0); 946fe2efc57SMark } 947fe2efc57SMark 948fe2efc57SMark /*@C 949bb7acecfSBarry Smith DMView - Views a `DM`. Depending on the `PetscViewer` and its `PetscViewerFormat` it may print some ASCII information about the `DM` to the screen or a file or 950bb7acecfSBarry Smith save the `DM` in a binary file to be loaded later or create a visualization of the `DM` 95147c6ae99SBarry Smith 952d083f849SBarry Smith Collective on dm 95347c6ae99SBarry Smith 954d8d19677SJose E. Roman Input Parameters: 955bb7acecfSBarry Smith + dm - the `DM` object to view 95647c6ae99SBarry Smith - v - the viewer 95747c6ae99SBarry Smith 958cd7e8a5eSksagiyam Notes: 959bb7acecfSBarry Smith Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` as the `PetscViewerFormat` one can save multiple `DMPLEX` 960bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 961bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 962cd7e8a5eSksagiyam 963224748a4SBarry Smith Level: beginner 96447c6ae99SBarry Smith 965bb7acecfSBarry Smith .seealso: `PetscViewer`, `PetscViewerFormat`, `PetscViewerSetFormat`(), `DMDestroy()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMLoad()`, `PetscObjectSetName()` 96647c6ae99SBarry Smith 96747c6ae99SBarry Smith @*/ 968d71ae5a4SJacob Faibussowitsch PetscErrorCode DMView(DM dm, PetscViewer v) 969d71ae5a4SJacob Faibussowitsch { 97032c0f0efSBarry Smith PetscBool isbinary; 97176a8abe0SBarry Smith PetscMPIInt size; 97276a8abe0SBarry Smith PetscViewerFormat format; 97347c6ae99SBarry Smith 97447c6ae99SBarry Smith PetscFunctionBegin; 975171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 97648a46eb9SPierre Jolivet if (!v) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &v)); 977b1b135c8SBarry Smith PetscValidHeaderSpecific(v, PETSC_VIEWER_CLASSID, 2); 97874903a4fSStefano Zampini /* Ideally, we would like to have this test on. 97974903a4fSStefano Zampini However, it currently breaks socket viz via GLVis. 98074903a4fSStefano Zampini During DMView(parallel_mesh,glvis_viewer), each 98174903a4fSStefano Zampini process opens a sequential ASCII socket to visualize 98274903a4fSStefano Zampini the local mesh, and PetscObjectView(dm,local_socket) 98374903a4fSStefano Zampini is internally called inside VecView_GLVis, incurring 98474903a4fSStefano Zampini in an error here */ 98574903a4fSStefano Zampini /* PetscCheckSameComm(dm,1,v,2); */ 9869566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckWritable(v)); 987b1b135c8SBarry Smith 9889566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(v, &format)); 9899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 99076a8abe0SBarry Smith if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(0); 9919566063dSJacob Faibussowitsch PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)dm, v)); 9929566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)v, PETSCVIEWERBINARY, &isbinary)); 99332c0f0efSBarry Smith if (isbinary) { 99455849f57SBarry Smith PetscInt classid = DM_FILE_CLASSID; 99532c0f0efSBarry Smith char type[256]; 99632c0f0efSBarry Smith 9979566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, &classid, 1, PETSC_INT)); 9989566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(type, ((PetscObject)dm)->type_name, 256)); 9999566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, type, 256, PETSC_CHAR)); 100032c0f0efSBarry Smith } 1001dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, view, v); 100247c6ae99SBarry Smith PetscFunctionReturn(0); 100347c6ae99SBarry Smith } 100447c6ae99SBarry Smith 100547c6ae99SBarry Smith /*@ 1006bb7acecfSBarry Smith DMCreateGlobalVector - Creates a global vector from a `DM` object. A global vector is a parallel vector that has no duplicate values shared between MPI ranks, 1007bb7acecfSBarry Smith that is it has no ghost locations. 100847c6ae99SBarry Smith 1009d083f849SBarry Smith Collective on dm 101047c6ae99SBarry Smith 101147c6ae99SBarry Smith Input Parameter: 1012bb7acecfSBarry Smith . dm - the `DM` object 101347c6ae99SBarry Smith 101447c6ae99SBarry Smith Output Parameter: 101547c6ae99SBarry Smith . vec - the global vector 101647c6ae99SBarry Smith 1017073dac72SJed Brown Level: beginner 101847c6ae99SBarry Smith 1019bb7acecfSBarry Smith .seealso: `Vec`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1020bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 102147c6ae99SBarry Smith 102247c6ae99SBarry Smith @*/ 1023d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateGlobalVector(DM dm, Vec *vec) 1024d71ae5a4SJacob Faibussowitsch { 102547c6ae99SBarry Smith PetscFunctionBegin; 1026171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1027b9d85ea2SLisandro Dalcin PetscValidPointer(vec, 2); 1028dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createglobalvector, vec); 102976bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1030c6b011d8SStefano Zampini DM vdm; 1031c6b011d8SStefano Zampini 10329566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10337a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1034c6b011d8SStefano Zampini } 103547c6ae99SBarry Smith PetscFunctionReturn(0); 103647c6ae99SBarry Smith } 103747c6ae99SBarry Smith 103847c6ae99SBarry Smith /*@ 1039bb7acecfSBarry Smith DMCreateLocalVector - Creates a local vector from a `DM` object. 104047c6ae99SBarry Smith 104147c6ae99SBarry Smith Not Collective 104247c6ae99SBarry Smith 104347c6ae99SBarry Smith Input Parameter: 1044bb7acecfSBarry Smith . dm - the `DM` object 104547c6ae99SBarry Smith 104647c6ae99SBarry Smith Output Parameter: 104747c6ae99SBarry Smith . vec - the local vector 104847c6ae99SBarry Smith 1049073dac72SJed Brown Level: beginner 105047c6ae99SBarry Smith 1051bb7acecfSBarry Smith Notes: 1052bb7acecfSBarry Smith A local vector usually has ghost locations that contain values that are owned by different MPI ranks. A global vector has no ghost locations. 1053bb7acecfSBarry Smith 1054bb7acecfSBarry Smith .seealso: `Vec`, `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 1055bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 105647c6ae99SBarry Smith 105747c6ae99SBarry Smith @*/ 1058d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLocalVector(DM dm, Vec *vec) 1059d71ae5a4SJacob Faibussowitsch { 106047c6ae99SBarry Smith PetscFunctionBegin; 1061171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1062b9d85ea2SLisandro Dalcin PetscValidPointer(vec, 2); 1063dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalvector, vec); 106476bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1065c6b011d8SStefano Zampini DM vdm; 1066c6b011d8SStefano Zampini 10679566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10687a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_LIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1069c6b011d8SStefano Zampini } 107047c6ae99SBarry Smith PetscFunctionReturn(0); 107147c6ae99SBarry Smith } 107247c6ae99SBarry Smith 10731411c6eeSJed Brown /*@ 1074bb7acecfSBarry Smith DMGetLocalToGlobalMapping - Accesses the local-to-global mapping in a `DM`. 10751411c6eeSJed Brown 1076d083f849SBarry Smith Collective on dm 10771411c6eeSJed Brown 10781411c6eeSJed Brown Input Parameter: 1079bb7acecfSBarry Smith . dm - the `DM` that provides the mapping 10801411c6eeSJed Brown 10811411c6eeSJed Brown Output Parameter: 10821411c6eeSJed Brown . ltog - the mapping 10831411c6eeSJed Brown 1084bb7acecfSBarry Smith Level: advanced 10851411c6eeSJed Brown 10861411c6eeSJed Brown Notes: 1087bb7acecfSBarry Smith The global to local mapping allows one to set values into the global vector or matrix using `VecSetValuesLocal()` and `MatSetValuesLocal()` 10881411c6eeSJed Brown 1089bb7acecfSBarry Smith Vectors obtained with `DMCreateGlobalVector()` and matrices obtained with `DMCreateMatrix()` already contain the global mapping so you do 1090bb7acecfSBarry Smith need to use this function with those objects. 1091bb7acecfSBarry Smith 1092bb7acecfSBarry Smith This mapping can then be used by `VecSetLocalToGlobalMapping()` or `MatSetLocalToGlobalMapping()`. 1093bb7acecfSBarry Smith 1094bb7acecfSBarry Smith .seealso: `DMCreateLocalVector()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `VecSetLocalToGlobalMapping()`, `MatSetLocalToGlobalMapping()`, 1095bb7acecfSBarry Smith `DMCreateMatrix()` 10961411c6eeSJed Brown @*/ 1097d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalToGlobalMapping(DM dm, ISLocalToGlobalMapping *ltog) 1098d71ae5a4SJacob Faibussowitsch { 10990be3e97aSMatthew G. Knepley PetscInt bs = -1, bsLocal[2], bsMinMax[2]; 11001411c6eeSJed Brown 11011411c6eeSJed Brown PetscFunctionBegin; 11021411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11031411c6eeSJed Brown PetscValidPointer(ltog, 2); 11041411c6eeSJed Brown if (!dm->ltogmap) { 110537d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 110637d0c07bSMatthew G Knepley 11079566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 110837d0c07bSMatthew G Knepley if (section) { 1109a974ec88SMatthew G. Knepley const PetscInt *cdofs; 111037d0c07bSMatthew G Knepley PetscInt *ltog; 1111ccf3bd66SMatthew G. Knepley PetscInt pStart, pEnd, n, p, k, l; 111237d0c07bSMatthew G Knepley 11139566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 11149566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 11159566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(section, &n)); 11169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, <og)); /* We want the local+overlap size */ 111737d0c07bSMatthew G Knepley for (p = pStart, l = 0; p < pEnd; ++p) { 1118e6befd46SJed Brown PetscInt bdof, cdof, dof, off, c, cind; 111937d0c07bSMatthew G Knepley 112037d0c07bSMatthew G Knepley /* Should probably use constrained dofs */ 11219566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, p, &dof)); 11229566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(section, p, &cdof)); 11239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(section, p, &cdofs)); 11249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &off)); 11251a7dc684SMatthew G. Knepley /* If you have dofs, and constraints, and they are unequal, we set the blocksize to 1 */ 11261a7dc684SMatthew G. Knepley bdof = cdof && (dof - cdof) ? 1 : dof; 1127ad540459SPierre Jolivet if (dof) bs = bs < 0 ? bdof : PetscGCD(bs, bdof); 11285227eafbSStefano Zampini 1129e6befd46SJed Brown for (c = 0, cind = 0; c < dof; ++c, ++l) { 11305227eafbSStefano Zampini if (cind < cdof && c == cdofs[cind]) { 1131e6befd46SJed Brown ltog[l] = off < 0 ? off - c : -(off + c + 1); 1132e6befd46SJed Brown cind++; 1133e6befd46SJed Brown } else { 11345227eafbSStefano Zampini ltog[l] = (off < 0 ? -(off + 1) : off) + c - cind; 1135e6befd46SJed Brown } 113637d0c07bSMatthew G Knepley } 113737d0c07bSMatthew G Knepley } 1138bff27382SMatthew G. Knepley /* Must have same blocksize on all procs (some might have no points) */ 11399371c9d4SSatish Balay bsLocal[0] = bs < 0 ? PETSC_MAX_INT : bs; 11409371c9d4SSatish Balay bsLocal[1] = bs; 11419566063dSJacob Faibussowitsch PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)dm), bsLocal, bsMinMax)); 11429371c9d4SSatish Balay if (bsMinMax[0] != bsMinMax[1]) { 11439371c9d4SSatish Balay bs = 1; 11449371c9d4SSatish Balay } else { 11459371c9d4SSatish Balay bs = bsMinMax[0]; 11469371c9d4SSatish Balay } 11477591dbb2SMatthew G. Knepley bs = bs < 0 ? 1 : bs; 11487591dbb2SMatthew G. Knepley /* Must reduce indices by blocksize */ 1149ccf3bd66SMatthew G. Knepley if (bs > 1) { 1150ca469d19SJed Brown for (l = 0, k = 0; l < n; l += bs, ++k) { 1151ca469d19SJed Brown // Integer division of negative values truncates toward zero(!), not toward negative infinity 1152ca469d19SJed Brown ltog[k] = ltog[l] >= 0 ? ltog[l] / bs : -(-(ltog[l] + 1) / bs + 1); 1153ca469d19SJed Brown } 1154ccf3bd66SMatthew G. Knepley n /= bs; 1155ccf3bd66SMatthew G. Knepley } 11569566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm), bs, n, ltog, PETSC_OWN_POINTER, &dm->ltogmap)); 1157dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, getlocaltoglobalmapping); 115837d0c07bSMatthew G Knepley } 11591411c6eeSJed Brown *ltog = dm->ltogmap; 11601411c6eeSJed Brown PetscFunctionReturn(0); 11611411c6eeSJed Brown } 11621411c6eeSJed Brown 11631411c6eeSJed Brown /*@ 1164bb7acecfSBarry Smith DMGetBlockSize - Gets the inherent block size associated with a `DM` 11651411c6eeSJed Brown 11661411c6eeSJed Brown Not Collective 11671411c6eeSJed Brown 11681411c6eeSJed Brown Input Parameter: 1169bb7acecfSBarry Smith . dm - the `DM` with block structure 11701411c6eeSJed Brown 11711411c6eeSJed Brown Output Parameter: 11721411c6eeSJed Brown . bs - the block size, 1 implies no exploitable block structure 11731411c6eeSJed Brown 11741411c6eeSJed Brown Level: intermediate 11751411c6eeSJed Brown 1176bb7acecfSBarry Smith Note: 1177bb7acecfSBarry Smith This might be the number of degrees of freedom at each grid point for a structured grid. 1178bb7acecfSBarry Smith 1179bb7acecfSBarry Smith Complex `DM` that represent multiphysics or staggered grids or mixed-methods do not generally have a single inherent block size, but 1180bb7acecfSBarry Smith rather different locations in the vectors may have a different block size. 1181bb7acecfSBarry Smith 1182db781477SPatrick Sanan .seealso: `ISCreateBlock()`, `VecSetBlockSize()`, `MatSetBlockSize()`, `DMGetLocalToGlobalMapping()` 11831411c6eeSJed Brown @*/ 1184d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBlockSize(DM dm, PetscInt *bs) 1185d71ae5a4SJacob Faibussowitsch { 11861411c6eeSJed Brown PetscFunctionBegin; 11871411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1188534a8f05SLisandro Dalcin PetscValidIntPointer(bs, 2); 11897a8be351SBarry Smith PetscCheck(dm->bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM does not have enough information to provide a block size yet"); 11901411c6eeSJed Brown *bs = dm->bs; 11911411c6eeSJed Brown PetscFunctionReturn(0); 11921411c6eeSJed Brown } 11931411c6eeSJed Brown 119448eeb7c8SBarry Smith /*@C 1195bb7acecfSBarry Smith DMCreateInterpolation - Gets the interpolation matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1196bb7acecfSBarry Smith `DMCreateGlobalVector()` on the coarse `DM` to similar vectors on the fine grid `DM`. 119747c6ae99SBarry Smith 1198a5bc1bf3SBarry Smith Collective on dmc 119947c6ae99SBarry Smith 1200d8d19677SJose E. Roman Input Parameters: 1201bb7acecfSBarry Smith + dmc - the `DM` object 1202bb7acecfSBarry Smith - dmf - the second, finer `DM` object 120347c6ae99SBarry Smith 1204d8d19677SJose E. Roman Output Parameters: 120547c6ae99SBarry Smith + mat - the interpolation 1206bb7acecfSBarry Smith - vec - the scaling (optional), see `DMCreateInterpolationScale()` 120747c6ae99SBarry Smith 120847c6ae99SBarry Smith Level: developer 120947c6ae99SBarry Smith 121095452b02SPatrick Sanan Notes: 1211bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1212bb7acecfSBarry Smith DMCoarsen(). The coordinates set into the `DMDA` are completely ignored in computing the interpolation. 1213d52bd9f3SBarry Smith 1214bb7acecfSBarry Smith For `DMDA` objects you can use this interpolation (more precisely the interpolation from the `DMGetCoordinateDM()`) to interpolate the mesh coordinate 1215bb7acecfSBarry Smith vectors EXCEPT in the periodic case where it does not make sense since the coordinate vectors are not periodic. 121685afcc9aSBarry Smith 1217bb7acecfSBarry Smith .seealso: `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolationScale()` 121847c6ae99SBarry Smith 121947c6ae99SBarry Smith @*/ 1220d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolation(DM dmc, DM dmf, Mat *mat, Vec *vec) 1221d71ae5a4SJacob Faibussowitsch { 122247c6ae99SBarry Smith PetscFunctionBegin; 1223a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1224a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 1225c7d20fa0SStefano Zampini PetscValidPointer(mat, 3); 12269566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInterpolation, dmc, dmf, 0, 0)); 1227dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createinterpolation, dmf, mat, vec); 12289566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInterpolation, dmc, dmf, 0, 0)); 122947c6ae99SBarry Smith PetscFunctionReturn(0); 123047c6ae99SBarry Smith } 123147c6ae99SBarry Smith 12323ad4599aSBarry Smith /*@ 1233bb7acecfSBarry Smith DMCreateInterpolationScale - Forms L = 1/(R*1) where 1 is the vector of all ones, and R is the transpose of the interpolation between the `DM`. 1234bb7acecfSBarry Smith xcoarse = diag(L)*R*xfine preserves scale and is thus suitable for state (versus residual) restriction. In other words xcoarse is the coarse 1235bb7acecfSBarry Smith representation of xfine. 12362ed6491fSPatrick Sanan 12372ed6491fSPatrick Sanan Input Parameters: 1238bb7acecfSBarry Smith + dac - `DM` that defines a coarse mesh 1239bb7acecfSBarry Smith . daf - `DM` that defines a fine mesh 12402ed6491fSPatrick Sanan - mat - the restriction (or interpolation operator) from fine to coarse 12412ed6491fSPatrick Sanan 12422ed6491fSPatrick Sanan Output Parameter: 12432ed6491fSPatrick Sanan . scale - the scaled vector 12442ed6491fSPatrick Sanan 1245bb7acecfSBarry Smith Level: advanced 12462ed6491fSPatrick Sanan 1247e9c74fd6SRichard Tran Mills Developer Notes: 1248bb7acecfSBarry Smith If the fine-scale `DMDA` has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()` 1249e9c74fd6SRichard Tran Mills on the restriction/interpolation operator to set the bindingpropagates flag to true. 1250e9c74fd6SRichard Tran Mills 1251bb7acecfSBarry Smith .seealso: `MatRestrict()`, `MatInterpolate()`, `DMCreateInterpolation()`, DMCreateRestriction()`, `DMCreateGlobalVector()` 12522ed6491fSPatrick Sanan 12532ed6491fSPatrick Sanan @*/ 1254d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolationScale(DM dac, DM daf, Mat mat, Vec *scale) 1255d71ae5a4SJacob Faibussowitsch { 12562ed6491fSPatrick Sanan Vec fine; 12572ed6491fSPatrick Sanan PetscScalar one = 1.0; 12589704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 1259e9c74fd6SRichard Tran Mills PetscBool bindingpropagates, isbound; 12609704db99SRichard Tran Mills #endif 12612ed6491fSPatrick Sanan 12622ed6491fSPatrick Sanan PetscFunctionBegin; 12639566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(daf, &fine)); 12649566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(dac, scale)); 12659566063dSJacob Faibussowitsch PetscCall(VecSet(fine, one)); 12669704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 12679704db99SRichard Tran Mills /* If the 'fine' Vec is bound to the CPU, it makes sense to bind 'mat' as well. 12689704db99SRichard Tran Mills * Note that we only do this for the CUDA case, right now, but if we add support for MatMultTranspose() via ViennaCL, 12699704db99SRichard Tran Mills * we'll need to do it for that case, too.*/ 12709566063dSJacob Faibussowitsch PetscCall(VecGetBindingPropagates(fine, &bindingpropagates)); 1271e9c74fd6SRichard Tran Mills if (bindingpropagates) { 12729566063dSJacob Faibussowitsch PetscCall(MatSetBindingPropagates(mat, PETSC_TRUE)); 12739566063dSJacob Faibussowitsch PetscCall(VecBoundToCPU(fine, &isbound)); 12749566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mat, isbound)); 127583aa49f4SRichard Tran Mills } 12769704db99SRichard Tran Mills #endif 12779566063dSJacob Faibussowitsch PetscCall(MatRestrict(mat, fine, *scale)); 12789566063dSJacob Faibussowitsch PetscCall(VecDestroy(&fine)); 12799566063dSJacob Faibussowitsch PetscCall(VecReciprocal(*scale)); 12802ed6491fSPatrick Sanan PetscFunctionReturn(0); 12812ed6491fSPatrick Sanan } 12822ed6491fSPatrick Sanan 12832ed6491fSPatrick Sanan /*@ 1284bb7acecfSBarry Smith DMCreateRestriction - Gets restriction matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1285bb7acecfSBarry Smith `DMCreateGlobalVector()` on the fine `DM` to similar vectors on the coarse grid `DM`. 12863ad4599aSBarry Smith 1287a5bc1bf3SBarry Smith Collective on dmc 12883ad4599aSBarry Smith 1289d8d19677SJose E. Roman Input Parameters: 1290bb7acecfSBarry Smith + dmc - the `DM` object 1291bb7acecfSBarry Smith - dmf - the second, finer `DM` object 12923ad4599aSBarry Smith 12933ad4599aSBarry Smith Output Parameter: 12943ad4599aSBarry Smith . mat - the restriction 12953ad4599aSBarry Smith 12963ad4599aSBarry Smith Level: developer 12973ad4599aSBarry Smith 1298bb7acecfSBarry Smith Note: 1299bb7acecfSBarry Smith This only works for `DMSTAG`. For many situations either the transpose of the operator obtained with `DMCreateInterpolation()` or that 1300bb7acecfSBarry Smith matrix multiplied by the vector obtained with `DMCreateInterpolationScale()` provides the desired object. 13013ad4599aSBarry Smith 1302bb7acecfSBarry Smith .seealso: `DMRestrict()`, `DMInterpolate()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateInterpolation()` 13033ad4599aSBarry Smith 13043ad4599aSBarry Smith @*/ 1305d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateRestriction(DM dmc, DM dmf, Mat *mat) 1306d71ae5a4SJacob Faibussowitsch { 13073ad4599aSBarry Smith PetscFunctionBegin; 1308a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1309a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 13105a84ad33SLisandro Dalcin PetscValidPointer(mat, 3); 13119566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateRestriction, dmc, dmf, 0, 0)); 1312dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createrestriction, dmf, mat); 13139566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateRestriction, dmc, dmf, 0, 0)); 13143ad4599aSBarry Smith PetscFunctionReturn(0); 13153ad4599aSBarry Smith } 13163ad4599aSBarry Smith 131747c6ae99SBarry Smith /*@ 1318bb7acecfSBarry Smith DMCreateInjection - Gets injection matrix between two `DM` objects. This is an operator that applied to a vector obtained with 1319bb7acecfSBarry Smith `DMCreateGlobalVector()` on the fine grid maps the values to a vector on the vector on the coarse `DM` by simply selecting the values 1320bb7acecfSBarry Smith on the coarse grid points. This compares to the operator obtained by `DMCreateRestriction()` or the transpose of the operator obtained 1321bb7acecfSBarry Smith by `DMCreateInterpolation()` that uses a "local weighted average" of the values around the coarse grid point as the coarse grid value. 132247c6ae99SBarry Smith 1323a5bc1bf3SBarry Smith Collective on dac 132447c6ae99SBarry Smith 1325d8d19677SJose E. Roman Input Parameters: 1326bb7acecfSBarry Smith + dac - the `DM` object 1327bb7acecfSBarry Smith - daf - the second, finer `DM` object 132847c6ae99SBarry Smith 132947c6ae99SBarry Smith Output Parameter: 13306dbf9973SLawrence Mitchell . mat - the injection 133147c6ae99SBarry Smith 133247c6ae99SBarry Smith Level: developer 133347c6ae99SBarry Smith 1334bb7acecfSBarry Smith Note: 1335bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1336bb7acecfSBarry Smith `DMCoarsen()`. The coordinates set into the `DMDA` are completely ignored in computing the injection. 133785afcc9aSBarry Smith 1338bb7acecfSBarry Smith .seealso: `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateInterpolation()`, 1339bb7acecfSBarry Smith `DMCreateRestriction()`, `MatRestrict()`, `MatInterpolate()` 134047c6ae99SBarry Smith 134147c6ae99SBarry Smith @*/ 1342d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInjection(DM dac, DM daf, Mat *mat) 1343d71ae5a4SJacob Faibussowitsch { 134447c6ae99SBarry Smith PetscFunctionBegin; 1345a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dac, DM_CLASSID, 1); 1346a5bc1bf3SBarry Smith PetscValidHeaderSpecific(daf, DM_CLASSID, 2); 13475a84ad33SLisandro Dalcin PetscValidPointer(mat, 3); 13489566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInjection, dac, daf, 0, 0)); 1349dbbe0bcdSBarry Smith PetscUseTypeMethod(dac, createinjection, daf, mat); 13509566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInjection, dac, daf, 0, 0)); 135147c6ae99SBarry Smith PetscFunctionReturn(0); 135247c6ae99SBarry Smith } 135347c6ae99SBarry Smith 1354b412c318SBarry Smith /*@ 1355bb7acecfSBarry Smith DMCreateMassMatrix - Gets the mass matrix between two `DM` objects, M_ij = \int \phi_i \psi_j where the \phi are Galerkin basis functions for a 1356bb7acecfSBarry Smith a Galerkin finite element model on the `DM` 1357bd041c0cSMatthew G. Knepley 1358a5bc1bf3SBarry Smith Collective on dac 1359bd041c0cSMatthew G. Knepley 1360d8d19677SJose E. Roman Input Parameters: 1361bb7acecfSBarry Smith + dmc - the target `DM` object 1362bb7acecfSBarry Smith - dmf - the source `DM` object 1363bd041c0cSMatthew G. Knepley 1364bd041c0cSMatthew G. Knepley Output Parameter: 1365b4937a87SMatthew G. Knepley . mat - the mass matrix 1366bd041c0cSMatthew G. Knepley 1367bd041c0cSMatthew G. Knepley Level: developer 1368bd041c0cSMatthew G. Knepley 1369bb7acecfSBarry Smith Notes: 1370bb7acecfSBarry Smith For `DMPLEX` the finite element model for the `DM` must have been already provided. 1371bb7acecfSBarry Smith 1372bb7acecfSBarry Smith if dmc is dmf then x^t M x is an approximation to the L2 norm of the vector x which is obtained by `DMCreateGlobalVector()` 1373bb7acecfSBarry Smith 1374bb7acecfSBarry Smith .seealso: `DMCreateMassMatrixLumped()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1375bd041c0cSMatthew G. Knepley @*/ 1376d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrix(DM dmc, DM dmf, Mat *mat) 1377d71ae5a4SJacob Faibussowitsch { 1378bd041c0cSMatthew G. Knepley PetscFunctionBegin; 1379b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1380b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 13815a84ad33SLisandro Dalcin PetscValidPointer(mat, 3); 13825b8ffe73SMark Adams PetscCall(PetscLogEventBegin(DM_CreateMassMatrix, 0, 0, 0, 0)); 1383dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createmassmatrix, dmf, mat); 13845b8ffe73SMark Adams PetscCall(PetscLogEventEnd(DM_CreateMassMatrix, 0, 0, 0, 0)); 1385b4937a87SMatthew G. Knepley PetscFunctionReturn(0); 1386b4937a87SMatthew G. Knepley } 1387b4937a87SMatthew G. Knepley 1388b4937a87SMatthew G. Knepley /*@ 1389bb7acecfSBarry Smith DMCreateMassMatrixLumped - Gets the lumped mass matrix for a given `DM` 1390b4937a87SMatthew G. Knepley 1391b4937a87SMatthew G. Knepley Collective on dm 1392b4937a87SMatthew G. Knepley 1393b4937a87SMatthew G. Knepley Input Parameter: 1394bb7acecfSBarry Smith . dm - the `DM` object 1395b4937a87SMatthew G. Knepley 1396b4937a87SMatthew G. Knepley Output Parameter: 1397bb7acecfSBarry Smith . lm - the lumped mass matrix, which is a diagonal matrix, represented as a vector 1398b4937a87SMatthew G. Knepley 1399b4937a87SMatthew G. Knepley Level: developer 1400b4937a87SMatthew G. Knepley 1401bb7acecfSBarry Smith Note: 1402bb7acecfSBarry Smith See `DMCreateMassMatrix()` for how to create the non-lumped version of the mass matrix. 1403bb7acecfSBarry Smith 1404bb7acecfSBarry Smith .seealso: `DMCreateMassMatrix()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1405b4937a87SMatthew G. Knepley @*/ 1406d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrixLumped(DM dm, Vec *lm) 1407d71ae5a4SJacob Faibussowitsch { 1408b4937a87SMatthew G. Knepley PetscFunctionBegin; 1409b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1410b4937a87SMatthew G. Knepley PetscValidPointer(lm, 2); 1411dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createmassmatrixlumped, lm); 1412bd041c0cSMatthew G. Knepley PetscFunctionReturn(0); 1413bd041c0cSMatthew G. Knepley } 1414bd041c0cSMatthew G. Knepley 1415bd041c0cSMatthew G. Knepley /*@ 1416bb7acecfSBarry Smith DMCreateColoring - Gets coloring of a graph associated with the `DM`. Often the graph represents the operator matrix associated with the discretization 1417bb7acecfSBarry Smith of a PDE on the `DM`. 141847c6ae99SBarry Smith 1419d083f849SBarry Smith Collective on dm 142047c6ae99SBarry Smith 1421d8d19677SJose E. Roman Input Parameters: 1422bb7acecfSBarry Smith + dm - the `DM` object 1423bb7acecfSBarry Smith - ctype - `IS_COLORING_LOCAL` or `IS_COLORING_GLOBAL` 142447c6ae99SBarry Smith 142547c6ae99SBarry Smith Output Parameter: 142647c6ae99SBarry Smith . coloring - the coloring 142747c6ae99SBarry Smith 1428ec5066bdSBarry Smith Notes: 1429bb7acecfSBarry Smith Coloring of matrices can also be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 1430bb7acecfSBarry Smith matrix comes from (what this function provides). In general using the mesh produces a more optimal coloring (fewer colors). 1431ec5066bdSBarry Smith 1432bb7acecfSBarry Smith This produces a coloring with the distance of 2, see `MatSetColoringDistance()` which can be used for efficiently computing Jacobians with `MatFDColoringCreate()` 1433ec5066bdSBarry Smith 143447c6ae99SBarry Smith Level: developer 143547c6ae99SBarry Smith 1436bb7acecfSBarry Smith .seealso: `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatType()`, `MatColoring`, `MatFDColoringCreate()` 143747c6ae99SBarry Smith 1438aab9d709SJed Brown @*/ 1439d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateColoring(DM dm, ISColoringType ctype, ISColoring *coloring) 1440d71ae5a4SJacob Faibussowitsch { 144147c6ae99SBarry Smith PetscFunctionBegin; 1442171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14435a84ad33SLisandro Dalcin PetscValidPointer(coloring, 3); 1444dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getcoloring, ctype, coloring); 144547c6ae99SBarry Smith PetscFunctionReturn(0); 144647c6ae99SBarry Smith } 144747c6ae99SBarry Smith 1448b412c318SBarry Smith /*@ 1449bb7acecfSBarry Smith DMCreateMatrix - Gets an empty matrix for a `DM` that is most commonly used to store the Jacobian of a discrete PDE operator. 145047c6ae99SBarry Smith 1451d083f849SBarry Smith Collective on dm 145247c6ae99SBarry Smith 145347c6ae99SBarry Smith Input Parameter: 1454bb7acecfSBarry Smith . dm - the `DM` object 145547c6ae99SBarry Smith 145647c6ae99SBarry Smith Output Parameter: 145747c6ae99SBarry Smith . mat - the empty Jacobian 145847c6ae99SBarry Smith 1459073dac72SJed Brown Level: beginner 146047c6ae99SBarry Smith 1461f27dd7c6SMatthew G. Knepley Options Database Keys: 1462bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 1463f27dd7c6SMatthew G. Knepley 146495452b02SPatrick Sanan Notes: 146595452b02SPatrick Sanan This properly preallocates the number of nonzeros in the sparse matrix so you 146694013140SBarry Smith do not need to do it yourself. 146794013140SBarry Smith 146894013140SBarry Smith By default it also sets the nonzero structure and puts in the zero entries. To prevent setting 1469bb7acecfSBarry Smith the nonzero pattern call `DMSetMatrixPreallocateOnly()` 147094013140SBarry Smith 1471bb7acecfSBarry Smith For `DMDA`, when you call `MatView()` on this matrix it is displayed using the global natural ordering, NOT in the ordering used 147294013140SBarry Smith internally by PETSc. 147394013140SBarry Smith 1474bb7acecfSBarry Smith For `DMDA`, in general it is easiest to use `MatSetValuesStencil()` or `MatSetValuesLocal()` to put values into the matrix because 1475bb7acecfSBarry Smith `MatSetValues()` requires the indices for the global numbering for the `DMDA` which is complic`ated to compute 147694013140SBarry Smith 1477bb7acecfSBarry Smith .seealso: `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMSetMatType()`, `DMCreateMassMatrix()` 147847c6ae99SBarry Smith 1479aab9d709SJed Brown @*/ 1480d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMatrix(DM dm, Mat *mat) 1481d71ae5a4SJacob Faibussowitsch { 148247c6ae99SBarry Smith PetscFunctionBegin; 1483171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1484064a246eSJacob Faibussowitsch PetscValidPointer(mat, 2); 14859566063dSJacob Faibussowitsch PetscCall(MatInitializePackage()); 14869566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateMatrix, 0, 0, 0, 0)); 1487dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, creatematrix, mat); 148876bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1489c6b011d8SStefano Zampini DM mdm; 1490c6b011d8SStefano Zampini 14919566063dSJacob Faibussowitsch PetscCall(MatGetDM(*mat, &mdm)); 14927a8be351SBarry Smith PetscCheck(mdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the matrix", ((PetscObject)dm)->type_name); 1493c6b011d8SStefano Zampini } 1494e571a35bSMatthew G. Knepley /* Handle nullspace and near nullspace */ 1495e5e52638SMatthew G. Knepley if (dm->Nf) { 1496e571a35bSMatthew G. Knepley MatNullSpace nullSpace; 1497649ef022SMatthew Knepley PetscInt Nf, f; 1498e571a35bSMatthew G. Knepley 14999566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 1500649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1501649ef022SMatthew Knepley if (dm->nullspaceConstructors[f]) { 15029566063dSJacob Faibussowitsch PetscCall((*dm->nullspaceConstructors[f])(dm, f, f, &nullSpace)); 15039566063dSJacob Faibussowitsch PetscCall(MatSetNullSpace(*mat, nullSpace)); 15049566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1505649ef022SMatthew Knepley break; 1506e571a35bSMatthew G. Knepley } 1507649ef022SMatthew Knepley } 1508649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1509649ef022SMatthew Knepley if (dm->nearnullspaceConstructors[f]) { 15109566063dSJacob Faibussowitsch PetscCall((*dm->nearnullspaceConstructors[f])(dm, f, f, &nullSpace)); 15119566063dSJacob Faibussowitsch PetscCall(MatSetNearNullSpace(*mat, nullSpace)); 15129566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1513e571a35bSMatthew G. Knepley } 1514e571a35bSMatthew G. Knepley } 1515e571a35bSMatthew G. Knepley } 15169566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateMatrix, 0, 0, 0, 0)); 151747c6ae99SBarry Smith PetscFunctionReturn(0); 151847c6ae99SBarry Smith } 151947c6ae99SBarry Smith 1520732e2eb9SMatthew G Knepley /*@ 1521bb7acecfSBarry Smith DMSetMatrixPreallocateSkip - When `DMCreateMatrix()` is called the matrix sizes and `ISLocalToGlobalMapping` will be 1522bb7acecfSBarry Smith properly set, but the data structures to store values in the matrices will not be preallocated. This is most useful to reduce initialization costs when 1523bb7acecfSBarry Smith `MatSetPreallocationCOO()` and `MatSetValuesCOO()` will be used. 1524aa0f6e3cSJed Brown 1525aa0f6e3cSJed Brown Logically Collective on dm 1526aa0f6e3cSJed Brown 1527aa0f6e3cSJed Brown Input Parameters: 1528bb7acecfSBarry Smith + dm - the `DM` 1529bb7acecfSBarry Smith - skip - `PETSC_TRUE` to skip preallocation 1530aa0f6e3cSJed Brown 1531aa0f6e3cSJed Brown Level: developer 1532aa0f6e3cSJed Brown 1533bb7acecfSBarry Smith .seealso: `DMCreateMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateOnly()` 1534aa0f6e3cSJed Brown @*/ 1535d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateSkip(DM dm, PetscBool skip) 1536d71ae5a4SJacob Faibussowitsch { 1537aa0f6e3cSJed Brown PetscFunctionBegin; 1538aa0f6e3cSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1539aa0f6e3cSJed Brown dm->prealloc_skip = skip; 1540aa0f6e3cSJed Brown PetscFunctionReturn(0); 1541aa0f6e3cSJed Brown } 1542aa0f6e3cSJed Brown 1543aa0f6e3cSJed Brown /*@ 1544bb7acecfSBarry Smith DMSetMatrixPreallocateOnly - When `DMCreateMatrix()` is called the matrix will be properly 1545732e2eb9SMatthew G Knepley preallocated but the nonzero structure and zero values will not be set. 1546732e2eb9SMatthew G Knepley 1547d083f849SBarry Smith Logically Collective on dm 1548732e2eb9SMatthew G Knepley 1549d8d19677SJose E. Roman Input Parameters: 1550bb7acecfSBarry Smith + dm - the `DM` 1551bb7acecfSBarry Smith - only - `PETSC_TRUE` if only want preallocation 1552732e2eb9SMatthew G Knepley 1553732e2eb9SMatthew G Knepley Level: developer 1554f27dd7c6SMatthew G. Knepley 1555f27dd7c6SMatthew G. Knepley Options Database Keys: 1556bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()`, `DMCreateMassMatrix()`, but do not fill it with zeros 1557f27dd7c6SMatthew G. Knepley 1558bb7acecfSBarry Smith .seealso: `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateSkip()` 1559732e2eb9SMatthew G Knepley @*/ 1560d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateOnly(DM dm, PetscBool only) 1561d71ae5a4SJacob Faibussowitsch { 1562732e2eb9SMatthew G Knepley PetscFunctionBegin; 1563732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1564732e2eb9SMatthew G Knepley dm->prealloc_only = only; 1565732e2eb9SMatthew G Knepley PetscFunctionReturn(0); 1566732e2eb9SMatthew G Knepley } 1567732e2eb9SMatthew G Knepley 1568b06ff27eSHong Zhang /*@ 1569bb7acecfSBarry Smith DMSetMatrixStructureOnly - When `DMCreateMatrix()` is called, the matrix structure will be created 1570bb7acecfSBarry Smith but the array for numerical values will not be allocated. 1571b06ff27eSHong Zhang 1572d083f849SBarry Smith Logically Collective on dm 1573b06ff27eSHong Zhang 1574d8d19677SJose E. Roman Input Parameters: 1575bb7acecfSBarry Smith + dm - the `DM` 1576bb7acecfSBarry Smith - only - `PETSC_TRUE` if you only want matrix stucture 1577b06ff27eSHong Zhang 1578b06ff27eSHong Zhang Level: developer 1579bb7acecfSBarry Smith 1580bb7acecfSBarry Smith .seealso: `DMCreateMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMSetMatrixPreallocateSkip()` 1581b06ff27eSHong Zhang @*/ 1582d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixStructureOnly(DM dm, PetscBool only) 1583d71ae5a4SJacob Faibussowitsch { 1584b06ff27eSHong Zhang PetscFunctionBegin; 1585b06ff27eSHong Zhang PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1586b06ff27eSHong Zhang dm->structure_only = only; 1587b06ff27eSHong Zhang PetscFunctionReturn(0); 1588b06ff27eSHong Zhang } 1589b06ff27eSHong Zhang 1590a89ea682SMatthew G Knepley /*@C 1591bb7acecfSBarry Smith DMGetWorkArray - Gets a work array guaranteed to be at least the input size, restore with `DMRestoreWorkArray()` 1592a89ea682SMatthew G Knepley 1593a89ea682SMatthew G Knepley Not Collective 1594a89ea682SMatthew G Knepley 1595a89ea682SMatthew G Knepley Input Parameters: 1596bb7acecfSBarry Smith + dm - the `DM` object 1597a5b23f4aSJose E. Roman . count - The minimum size 1598bb7acecfSBarry Smith - dtype - MPI data type, often MPIU_REAL, MPIU_SCALAR, or MPIU_INT) 1599a89ea682SMatthew G Knepley 1600a89ea682SMatthew G Knepley Output Parameter: 1601a89ea682SMatthew G Knepley . array - the work array 1602a89ea682SMatthew G Knepley 1603a89ea682SMatthew G Knepley Level: developer 1604a89ea682SMatthew G Knepley 1605bb7acecfSBarry Smith Note: 1606bb7acecfSBarry Smith A `DM` may stash the array between instantations so using this routine may be more efficient than calling `PetscMalloc()` 1607bb7acecfSBarry Smith 1608bb7acecfSBarry Smith The array may contain nonzero values 1609bb7acecfSBarry Smith 1610bb7acecfSBarry Smith .seealso: `DMDestroy()`, `DMCreate()`, `DMRestoreWorkArray()`, `PetscMalloc()` 1611a89ea682SMatthew G Knepley @*/ 1612d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1613d71ae5a4SJacob Faibussowitsch { 1614aa1993deSMatthew G Knepley DMWorkLink link; 161569291d52SBarry Smith PetscMPIInt dsize; 1616a89ea682SMatthew G Knepley 1617a89ea682SMatthew G Knepley PetscFunctionBegin; 1618a89ea682SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1619aa1993deSMatthew G Knepley PetscValidPointer(mem, 4); 1620aa1993deSMatthew G Knepley if (dm->workin) { 1621aa1993deSMatthew G Knepley link = dm->workin; 1622aa1993deSMatthew G Knepley dm->workin = dm->workin->next; 1623aa1993deSMatthew G Knepley } else { 16244dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&link)); 1625a89ea682SMatthew G Knepley } 16269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_size(dtype, &dsize)); 16275056fcd2SBarry Smith if (((size_t)dsize * count) > link->bytes) { 16289566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 16299566063dSJacob Faibussowitsch PetscCall(PetscMalloc(dsize * count, &link->mem)); 1630854ce69bSBarry Smith link->bytes = dsize * count; 1631aa1993deSMatthew G Knepley } 1632aa1993deSMatthew G Knepley link->next = dm->workout; 1633aa1993deSMatthew G Knepley dm->workout = link; 1634cea3dcb8SSatish Balay #if defined(__MEMCHECK_H) && (defined(PLAT_amd64_linux) || defined(PLAT_x86_linux) || defined(PLAT_amd64_darwin)) 163500d952a4SJed Brown VALGRIND_MAKE_MEM_NOACCESS((char *)link->mem + (size_t)dsize * count, link->bytes - (size_t)dsize * count); 163600d952a4SJed Brown VALGRIND_MAKE_MEM_UNDEFINED(link->mem, (size_t)dsize * count); 163700d952a4SJed Brown #endif 1638aa1993deSMatthew G Knepley *(void **)mem = link->mem; 1639a89ea682SMatthew G Knepley PetscFunctionReturn(0); 1640a89ea682SMatthew G Knepley } 1641a89ea682SMatthew G Knepley 1642aa1993deSMatthew G Knepley /*@C 1643bb7acecfSBarry Smith DMRestoreWorkArray - Restores a work array obtained with `DMCreateWorkArray()` 1644aa1993deSMatthew G Knepley 1645aa1993deSMatthew G Knepley Not Collective 1646aa1993deSMatthew G Knepley 1647aa1993deSMatthew G Knepley Input Parameters: 1648bb7acecfSBarry Smith + dm - the `DM` object 1649a5b23f4aSJose E. Roman . count - The minimum size 165069291d52SBarry Smith - dtype - MPI data type, often MPIU_REAL, MPIU_SCALAR, MPIU_INT 1651aa1993deSMatthew G Knepley 1652aa1993deSMatthew G Knepley Output Parameter: 1653aa1993deSMatthew G Knepley . array - the work array 1654aa1993deSMatthew G Knepley 1655aa1993deSMatthew G Knepley Level: developer 1656aa1993deSMatthew G Knepley 165795452b02SPatrick Sanan Developer Notes: 1658bb7acecfSBarry Smith count and dtype are ignored, they are only needed for `DMGetWorkArray()` 1659147403d9SBarry Smith 1660bb7acecfSBarry Smith .seealso: `DMDestroy()`, `DMCreate()`, `DMGetWorkArray()` 1661aa1993deSMatthew G Knepley @*/ 1662d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestoreWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1663d71ae5a4SJacob Faibussowitsch { 1664aa1993deSMatthew G Knepley DMWorkLink *p, link; 1665aa1993deSMatthew G Knepley 1666aa1993deSMatthew G Knepley PetscFunctionBegin; 1667aa1993deSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1668aa1993deSMatthew G Knepley PetscValidPointer(mem, 4); 1669aa1993deSMatthew G Knepley for (p = &dm->workout; (link = *p); p = &link->next) { 1670aa1993deSMatthew G Knepley if (link->mem == *(void **)mem) { 1671aa1993deSMatthew G Knepley *p = link->next; 1672aa1993deSMatthew G Knepley link->next = dm->workin; 1673aa1993deSMatthew G Knepley dm->workin = link; 16740298fd71SBarry Smith *(void **)mem = NULL; 1675aa1993deSMatthew G Knepley PetscFunctionReturn(0); 1676aa1993deSMatthew G Knepley } 1677aa1993deSMatthew G Knepley } 1678aa1993deSMatthew G Knepley SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Array was not checked out"); 1679aa1993deSMatthew G Knepley } 1680e7c4fc90SDmitry Karpeev 16818cda7954SMatthew G. Knepley /*@C 1682bb7acecfSBarry Smith DMSetNullSpaceConstructor - Provide a callback function which constructs the nullspace for a given field, defined with `DMAddField()`, when function spaces 1683bb7acecfSBarry Smith are joined or split, such as in `DMCreateSubDM()` 16848cda7954SMatthew G. Knepley 1685bb7acecfSBarry Smith Logically collective on dm 16868cda7954SMatthew G. Knepley 16878cda7954SMatthew G. Knepley Input Parameters: 1688bb7acecfSBarry Smith + dm - The `DM` 16898cda7954SMatthew G. Knepley . field - The field number for the nullspace 16908cda7954SMatthew G. Knepley - nullsp - A callback to create the nullspace 16918cda7954SMatthew G. Knepley 1692147403d9SBarry Smith Calling sequence of nullsp: 1693147403d9SBarry Smith .vb 1694147403d9SBarry Smith PetscErrorCode nullsp(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace) 1695147403d9SBarry Smith .ve 1696bb7acecfSBarry Smith + dm - The present `DM` 1697bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1698147403d9SBarry Smith . field - The field number in dm 1699147403d9SBarry Smith - nullSpace - The nullspace for the given field 17008cda7954SMatthew G. Knepley 170149762cbcSSatish Balay Level: intermediate 170249762cbcSSatish Balay 1703bb7acecfSBarry Smith Fortran Notes: 1704bb7acecfSBarry Smith This function is not available from Fortran. 1705bb7acecfSBarry Smith 1706bb7acecfSBarry Smith .seealso: `DMAddField()`, `DMGetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1707147403d9SBarry Smith @*/ 1708d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM, PetscInt, PetscInt, MatNullSpace *)) 1709d71ae5a4SJacob Faibussowitsch { 1710435a35e8SMatthew G Knepley PetscFunctionBegin; 1711435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17127a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1713435a35e8SMatthew G Knepley dm->nullspaceConstructors[field] = nullsp; 1714435a35e8SMatthew G Knepley PetscFunctionReturn(0); 1715435a35e8SMatthew G Knepley } 1716435a35e8SMatthew G Knepley 17178cda7954SMatthew G. Knepley /*@C 1718bb7acecfSBarry Smith DMGetNullSpaceConstructor - Return the callback function which constructs the nullspace for a given field, defined with `DMAddField()` 17198cda7954SMatthew G. Knepley 17208cda7954SMatthew G. Knepley Not collective 17218cda7954SMatthew G. Knepley 17228cda7954SMatthew G. Knepley Input Parameters: 1723bb7acecfSBarry Smith + dm - The `DM` 17248cda7954SMatthew G. Knepley - field - The field number for the nullspace 17258cda7954SMatthew G. Knepley 17268cda7954SMatthew G. Knepley Output Parameter: 17278cda7954SMatthew G. Knepley . nullsp - A callback to create the nullspace 17288cda7954SMatthew G. Knepley 1729147403d9SBarry Smith Calling sequence of nullsp: 1730147403d9SBarry Smith .vb 1731147403d9SBarry Smith PetscErrorCode nullsp(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace) 1732147403d9SBarry Smith .ve 1733147403d9SBarry Smith + dm - The present DM 1734147403d9SBarry Smith . origField - The field number given above, in the original DM 1735147403d9SBarry Smith . field - The field number in dm 1736147403d9SBarry Smith - nullSpace - The nullspace for the given field 17378cda7954SMatthew G. Knepley 1738bb7acecfSBarry Smith Fortran Note: 1739bb7acecfSBarry Smith This function is not available from Fortran. 17408cda7954SMatthew G. Knepley 174149762cbcSSatish Balay Level: intermediate 174249762cbcSSatish Balay 1743bb7acecfSBarry Smith .seealso: `DMAddField()`, `DMGetField()`, `DMSetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1744147403d9SBarry Smith @*/ 1745d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM, PetscInt, PetscInt, MatNullSpace *)) 1746d71ae5a4SJacob Faibussowitsch { 17470a50eb56SMatthew G. Knepley PetscFunctionBegin; 17480a50eb56SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1749f9d4088aSMatthew G. Knepley PetscValidPointer(nullsp, 3); 17507a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 17510a50eb56SMatthew G. Knepley *nullsp = dm->nullspaceConstructors[field]; 17520a50eb56SMatthew G. Knepley PetscFunctionReturn(0); 17530a50eb56SMatthew G. Knepley } 17540a50eb56SMatthew G. Knepley 17558cda7954SMatthew G. Knepley /*@C 1756bb7acecfSBarry Smith DMSetNearNullSpaceConstructor - Provide a callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 17578cda7954SMatthew G. Knepley 1758bb7acecfSBarry Smith Logically collective on dm 17598cda7954SMatthew G. Knepley 17608cda7954SMatthew G. Knepley Input Parameters: 1761bb7acecfSBarry Smith + dm - The `DM` 17628cda7954SMatthew G. Knepley . field - The field number for the nullspace 17638cda7954SMatthew G. Knepley - nullsp - A callback to create the near-nullspace 17648cda7954SMatthew G. Knepley 1765147403d9SBarry Smith Calling sequence of nullsp: 1766147403d9SBarry Smith .vb 1767147403d9SBarry Smith PetscErrorCode nullsp(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace) 1768147403d9SBarry Smith .ve 1769bb7acecfSBarry Smith + dm - The present `DM` 1770bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1771147403d9SBarry Smith . field - The field number in dm 1772147403d9SBarry Smith - nullSpace - The nullspace for the given field 17738cda7954SMatthew G. Knepley 1774bb7acecfSBarry Smith Fortran Note: 1775bb7acecfSBarry Smith This function is not available from Fortran. 17768cda7954SMatthew G. Knepley 177749762cbcSSatish Balay Level: intermediate 177849762cbcSSatish Balay 1779bb7acecfSBarry Smith .seealso: `DMAddField()`, `DMGetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`, 1780bb7acecfSBarry Smith `MatNullSpace` 1781147403d9SBarry Smith @*/ 1782d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM, PetscInt, PetscInt, MatNullSpace *)) 1783d71ae5a4SJacob Faibussowitsch { 1784f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1785f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17867a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1787f9d4088aSMatthew G. Knepley dm->nearnullspaceConstructors[field] = nullsp; 1788f9d4088aSMatthew G. Knepley PetscFunctionReturn(0); 1789f9d4088aSMatthew G. Knepley } 1790f9d4088aSMatthew G. Knepley 17918cda7954SMatthew G. Knepley /*@C 1792bb7acecfSBarry Smith DMGetNearNullSpaceConstructor - Return the callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 17938cda7954SMatthew G. Knepley 17948cda7954SMatthew G. Knepley Not collective 17958cda7954SMatthew G. Knepley 17968cda7954SMatthew G. Knepley Input Parameters: 1797bb7acecfSBarry Smith + dm - The `DM` 17988cda7954SMatthew G. Knepley - field - The field number for the nullspace 17998cda7954SMatthew G. Knepley 18008cda7954SMatthew G. Knepley Output Parameter: 18018cda7954SMatthew G. Knepley . nullsp - A callback to create the near-nullspace 18028cda7954SMatthew G. Knepley 1803147403d9SBarry Smith Calling sequence of nullsp: 1804147403d9SBarry Smith .vb 1805147403d9SBarry Smith PetscErrorCode nullsp(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace) 1806147403d9SBarry Smith .ve 1807bb7acecfSBarry Smith + dm - The present `DM` 1808bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1809147403d9SBarry Smith . field - The field number in dm 1810147403d9SBarry Smith - nullSpace - The nullspace for the given field 18118cda7954SMatthew G. Knepley 1812bb7acecfSBarry Smith Fortran Note: 1813bb7acecfSBarry Smith This function is not available from Fortran. 18148cda7954SMatthew G. Knepley 181549762cbcSSatish Balay Level: intermediate 181649762cbcSSatish Balay 1817bb7acecfSBarry Smith .seealso: `DMAddField()`, `DMGetField()`, `DMSetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, 1818bb7acecfSBarry Smith `MatNullSpace`, `DMCreateSuperDM()` 1819147403d9SBarry Smith @*/ 1820d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM, PetscInt, PetscInt, MatNullSpace *)) 1821d71ae5a4SJacob Faibussowitsch { 1822f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1823f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1824f9d4088aSMatthew G. Knepley PetscValidPointer(nullsp, 3); 18257a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1826f9d4088aSMatthew G. Knepley *nullsp = dm->nearnullspaceConstructors[field]; 1827f9d4088aSMatthew G. Knepley PetscFunctionReturn(0); 1828f9d4088aSMatthew G. Knepley } 1829f9d4088aSMatthew G. Knepley 18304f3b5142SJed Brown /*@C 1831bb7acecfSBarry Smith DMCreateFieldIS - Creates a set of `IS` objects with the global indices of dofs for each field defined with `DMAddField()` 18324d343eeaSMatthew G Knepley 18334d343eeaSMatthew G Knepley Not collective 18344d343eeaSMatthew G Knepley 18354d343eeaSMatthew G Knepley Input Parameter: 1836bb7acecfSBarry Smith . dm - the `DM` object 18374d343eeaSMatthew G Knepley 18384d343eeaSMatthew G Knepley Output Parameters: 18390298fd71SBarry Smith + numFields - The number of fields (or NULL if not requested) 1840bb7acecfSBarry Smith . fieldNames - The number of each field (or NULL if not requested) 18410298fd71SBarry Smith - fields - The global indices for each field (or NULL if not requested) 18424d343eeaSMatthew G Knepley 18434d343eeaSMatthew G Knepley Level: intermediate 18444d343eeaSMatthew G Knepley 1845bb7acecfSBarry Smith Note: 184621c9b008SJed Brown The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with 1847bb7acecfSBarry Smith `PetscFree()`, every entry of fields should be destroyed with `ISDestroy()`, and both arrays should be freed with 1848bb7acecfSBarry Smith `PetscFree()`. 184921c9b008SJed Brown 1850bb7acecfSBarry Smith Fortran Note: 1851bb7acecfSBarry Smith Not available in Fortran. 1852bb7acecfSBarry Smith 1853bb7acecfSBarry Smith Developer Note: 1854bb7acecfSBarry Smith It is not clear why both this function and `DMCreateFieldDecomposition()` exist. Having two seems redundant and confusing. This function should 1855bb7acecfSBarry Smith likely be removed. 1856bb7acecfSBarry Smith 1857bb7acecfSBarry Smith .seealso: `DMAddField()`, `DMGetField()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1858bb7acecfSBarry Smith `DMCreateFieldDecomposition()` 18594d343eeaSMatthew G Knepley @*/ 1860d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldIS(DM dm, PetscInt *numFields, char ***fieldNames, IS **fields) 1861d71ae5a4SJacob Faibussowitsch { 186237d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 18634d343eeaSMatthew G Knepley 18644d343eeaSMatthew G Knepley PetscFunctionBegin; 18654d343eeaSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 186669ca1f37SDmitry Karpeev if (numFields) { 1867534a8f05SLisandro Dalcin PetscValidIntPointer(numFields, 2); 186869ca1f37SDmitry Karpeev *numFields = 0; 186969ca1f37SDmitry Karpeev } 187037d0c07bSMatthew G Knepley if (fieldNames) { 187137d0c07bSMatthew G Knepley PetscValidPointer(fieldNames, 3); 18720298fd71SBarry Smith *fieldNames = NULL; 187369ca1f37SDmitry Karpeev } 187469ca1f37SDmitry Karpeev if (fields) { 187569ca1f37SDmitry Karpeev PetscValidPointer(fields, 4); 18760298fd71SBarry Smith *fields = NULL; 187769ca1f37SDmitry Karpeev } 18789566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 187937d0c07bSMatthew G Knepley if (section) { 18803a544194SStefano Zampini PetscInt *fieldSizes, *fieldNc, **fieldIndices; 188137d0c07bSMatthew G Knepley PetscInt nF, f, pStart, pEnd, p; 188237d0c07bSMatthew G Knepley 18839566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 18849566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &nF)); 18859566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nF, &fieldSizes, nF, &fieldNc, nF, &fieldIndices)); 18869566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd)); 188737d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 188837d0c07bSMatthew G Knepley fieldSizes[f] = 0; 18899566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &fieldNc[f])); 189037d0c07bSMatthew G Knepley } 189137d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 189237d0c07bSMatthew G Knepley PetscInt gdof; 189337d0c07bSMatthew G Knepley 18949566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 189537d0c07bSMatthew G Knepley if (gdof > 0) { 189637d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 18973a544194SStefano Zampini PetscInt fdof, fcdof, fpdof; 189837d0c07bSMatthew G Knepley 18999566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19009566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 19013a544194SStefano Zampini fpdof = fdof - fcdof; 19023a544194SStefano Zampini if (fpdof && fpdof != fieldNc[f]) { 19033a544194SStefano Zampini /* Layout does not admit a pointwise block size */ 19043a544194SStefano Zampini fieldNc[f] = 1; 19053a544194SStefano Zampini } 19063a544194SStefano Zampini fieldSizes[f] += fpdof; 190737d0c07bSMatthew G Knepley } 190837d0c07bSMatthew G Knepley } 190937d0c07bSMatthew G Knepley } 191037d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(fieldSizes[f], &fieldIndices[f])); 191237d0c07bSMatthew G Knepley fieldSizes[f] = 0; 191337d0c07bSMatthew G Knepley } 191437d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 191537d0c07bSMatthew G Knepley PetscInt gdof, goff; 191637d0c07bSMatthew G Knepley 19179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 191837d0c07bSMatthew G Knepley if (gdof > 0) { 19199566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &goff)); 192037d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 192137d0c07bSMatthew G Knepley PetscInt fdof, fcdof, fc; 192237d0c07bSMatthew G Knepley 19239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 1925ad540459SPierre Jolivet for (fc = 0; fc < fdof - fcdof; ++fc, ++fieldSizes[f]) fieldIndices[f][fieldSizes[f]] = goff++; 192637d0c07bSMatthew G Knepley } 192737d0c07bSMatthew G Knepley } 192837d0c07bSMatthew G Knepley } 19298865f1eaSKarl Rupp if (numFields) *numFields = nF; 193037d0c07bSMatthew G Knepley if (fieldNames) { 19319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fieldNames)); 193237d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 193337d0c07bSMatthew G Knepley const char *fieldName; 193437d0c07bSMatthew G Knepley 19359566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 19369566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(fieldName, (char **)&(*fieldNames)[f])); 193737d0c07bSMatthew G Knepley } 193837d0c07bSMatthew G Knepley } 193937d0c07bSMatthew G Knepley if (fields) { 19409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fields)); 194137d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19423a544194SStefano Zampini PetscInt bs, in[2], out[2]; 19433a544194SStefano Zampini 19449566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), fieldSizes[f], fieldIndices[f], PETSC_OWN_POINTER, &(*fields)[f])); 19453a544194SStefano Zampini in[0] = -fieldNc[f]; 19463a544194SStefano Zampini in[1] = fieldNc[f]; 19471c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 19483a544194SStefano Zampini bs = (-out[0] == out[1]) ? out[1] : 1; 19499566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize((*fields)[f], bs)); 195037d0c07bSMatthew G Knepley } 195137d0c07bSMatthew G Knepley } 19529566063dSJacob Faibussowitsch PetscCall(PetscFree3(fieldSizes, fieldNc, fieldIndices)); 1953dbbe0bcdSBarry Smith } else PetscTryTypeMethod(dm, createfieldis, numFields, fieldNames, fields); 19544d343eeaSMatthew G Knepley PetscFunctionReturn(0); 19554d343eeaSMatthew G Knepley } 19564d343eeaSMatthew G Knepley 195716621825SDmitry Karpeev /*@C 1958bb7acecfSBarry Smith DMCreateFieldDecomposition - Returns a list of `IS` objects defining a decomposition of a problem into subproblems 1959bb7acecfSBarry Smith corresponding to different fields: each `IS` contains the global indices of the dofs of the 1960bb7acecfSBarry Smith corresponding field, defined by `DMAddField()`. The optional list of `DM`s define the `DM` for each subproblem. 1961bb7acecfSBarry Smith The same as `DMCreateFieldIS()` but also returns a `DM` for each field. 1962e7c4fc90SDmitry Karpeev 1963e7c4fc90SDmitry Karpeev Not collective 1964e7c4fc90SDmitry Karpeev 1965e7c4fc90SDmitry Karpeev Input Parameter: 1966bb7acecfSBarry Smith . dm - the `DM` object 1967e7c4fc90SDmitry Karpeev 1968e7c4fc90SDmitry Karpeev Output Parameters: 1969bb7acecfSBarry Smith + len - The number of fields (or NULL if not requested) 19700298fd71SBarry Smith . namelist - The name for each field (or NULL if not requested) 19710298fd71SBarry Smith . islist - The global indices for each field (or NULL if not requested) 1972bb7acecfSBarry Smith - dmlist - The `DM`s for each field subproblem (or NULL, if not requested; if NULL is returned, no `DM`s are defined) 1973e7c4fc90SDmitry Karpeev 1974e7c4fc90SDmitry Karpeev Level: intermediate 1975e7c4fc90SDmitry Karpeev 1976bb7acecfSBarry Smith Note: 1977e7c4fc90SDmitry Karpeev The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with 1978bb7acecfSBarry Smith `PetscFree()`, every entry of is should be destroyed with `ISDestroy()`, every entry of dm should be destroyed with `DMDestroy()`, 1979bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 1980e7c4fc90SDmitry Karpeev 1981bb7acecfSBarry Smith Fortran Note: 1982bb7acecfSBarry Smith Not available in Fortran. 1983bb7acecfSBarry Smith 1984bb7acecfSBarry Smith Developer Note: 1985bb7acecfSBarry Smith It is not clear why this function and `DMCreateFieldIS()` exist. Having two seems redundant and confusing. 1986bb7acecfSBarry Smith 1987bb7acecfSBarry Smith .seealso: `DMAddField()`, `DMCreateFieldIS()`, `DMCreateSubDM()`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 1988e7c4fc90SDmitry Karpeev @*/ 1989d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldDecomposition(DM dm, PetscInt *len, char ***namelist, IS **islist, DM **dmlist) 1990d71ae5a4SJacob Faibussowitsch { 1991e7c4fc90SDmitry Karpeev PetscFunctionBegin; 1992e7c4fc90SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 19938865f1eaSKarl Rupp if (len) { 1994534a8f05SLisandro Dalcin PetscValidIntPointer(len, 2); 19958865f1eaSKarl Rupp *len = 0; 19968865f1eaSKarl Rupp } 19978865f1eaSKarl Rupp if (namelist) { 19988865f1eaSKarl Rupp PetscValidPointer(namelist, 3); 1999ea78f98cSLisandro Dalcin *namelist = NULL; 20008865f1eaSKarl Rupp } 20018865f1eaSKarl Rupp if (islist) { 20028865f1eaSKarl Rupp PetscValidPointer(islist, 4); 2003ea78f98cSLisandro Dalcin *islist = NULL; 20048865f1eaSKarl Rupp } 20058865f1eaSKarl Rupp if (dmlist) { 20068865f1eaSKarl Rupp PetscValidPointer(dmlist, 5); 2007ea78f98cSLisandro Dalcin *dmlist = NULL; 20088865f1eaSKarl Rupp } 2009f3f0edfdSDmitry Karpeev /* 2010f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2011f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2012f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2013f3f0edfdSDmitry Karpeev */ 20147a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 201516621825SDmitry Karpeev if (!dm->ops->createfielddecomposition) { 2016435a35e8SMatthew G Knepley PetscSection section; 2017435a35e8SMatthew G Knepley PetscInt numFields, f; 2018435a35e8SMatthew G Knepley 20199566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 20209566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(section, &numFields)); 2021435a35e8SMatthew G Knepley if (section && numFields && dm->ops->createsubdm) { 2022f25d98f1SMatthew G. Knepley if (len) *len = numFields; 20239566063dSJacob Faibussowitsch if (namelist) PetscCall(PetscMalloc1(numFields, namelist)); 20249566063dSJacob Faibussowitsch if (islist) PetscCall(PetscMalloc1(numFields, islist)); 20259566063dSJacob Faibussowitsch if (dmlist) PetscCall(PetscMalloc1(numFields, dmlist)); 2026435a35e8SMatthew G Knepley for (f = 0; f < numFields; ++f) { 2027435a35e8SMatthew G Knepley const char *fieldName; 2028435a35e8SMatthew G Knepley 20299566063dSJacob Faibussowitsch PetscCall(DMCreateSubDM(dm, 1, &f, islist ? &(*islist)[f] : NULL, dmlist ? &(*dmlist)[f] : NULL)); 203003dc3394SMatthew G. Knepley if (namelist) { 20319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 20329566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(fieldName, (char **)&(*namelist)[f])); 2033435a35e8SMatthew G Knepley } 203403dc3394SMatthew G. Knepley } 2035435a35e8SMatthew G Knepley } else { 20369566063dSJacob Faibussowitsch PetscCall(DMCreateFieldIS(dm, len, namelist, islist)); 2037e7c4fc90SDmitry Karpeev /* By default there are no DMs associated with subproblems. */ 20380298fd71SBarry Smith if (dmlist) *dmlist = NULL; 2039e7c4fc90SDmitry Karpeev } 2040dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, createfielddecomposition, len, namelist, islist, dmlist); 204116621825SDmitry Karpeev PetscFunctionReturn(0); 204216621825SDmitry Karpeev } 204316621825SDmitry Karpeev 2044412a4547SAlexis Marboeuf /*@C 2045412a4547SAlexis Marboeuf DMCreateSubDM - Returns an IS and DM encapsulating a subproblem defined by the fields passed in. 2046412a4547SAlexis Marboeuf The fields are defined by DMCreateFieldIS(). 2047435a35e8SMatthew G Knepley 2048435a35e8SMatthew G Knepley Not collective 2049435a35e8SMatthew G Knepley 2050435a35e8SMatthew G Knepley Input Parameters: 2051bb7acecfSBarry Smith + dm - The `DM `object 2052bb7acecfSBarry Smith . numFields - The number of fields to select 20532adcc780SMatthew G. Knepley - fields - The field numbers of the selected fields 2054435a35e8SMatthew G Knepley 2055435a35e8SMatthew G Knepley Output Parameters: 2056bb7acecfSBarry Smith + is - The global indices for all the degrees of freedom in the new sub `DM` 2057bb7acecfSBarry Smith - subdm - The `DM` for the subproblem 2058435a35e8SMatthew G Knepley 2059bb7acecfSBarry Smith Note: 2060bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 20615d3b26e6SMatthew G. Knepley 2062435a35e8SMatthew G Knepley Level: intermediate 2063435a35e8SMatthew G Knepley 2064bb7acecfSBarry Smith .seealso: `DMCreateFieldIS()`, `DMCreateFieldDecomposition()`, `DMAddField()`, `DMCreateSuperDM()`, `DM`, `IS`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 2065435a35e8SMatthew G Knepley @*/ 2066d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSubDM(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm) 2067d71ae5a4SJacob Faibussowitsch { 2068435a35e8SMatthew G Knepley PetscFunctionBegin; 2069435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2070dadcf809SJacob Faibussowitsch PetscValidIntPointer(fields, 3); 20718865f1eaSKarl Rupp if (is) PetscValidPointer(is, 4); 20728865f1eaSKarl Rupp if (subdm) PetscValidPointer(subdm, 5); 2073dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createsubdm, numFields, fields, is, subdm); 2074435a35e8SMatthew G Knepley PetscFunctionReturn(0); 2075435a35e8SMatthew G Knepley } 2076435a35e8SMatthew G Knepley 20772adcc780SMatthew G. Knepley /*@C 2078bb7acecfSBarry Smith DMCreateSuperDM - Returns an arrays of `IS` and `DM` encapsulating a superproblem defined by multiple `DM`s passed in. 20792adcc780SMatthew G. Knepley 20802adcc780SMatthew G. Knepley Not collective 20812adcc780SMatthew G. Knepley 2082d8d19677SJose E. Roman Input Parameters: 2083bb7acecfSBarry Smith + dms - The `DM` objects 2084bb7acecfSBarry Smith - n - The number of `DM`s 20852adcc780SMatthew G. Knepley 20862adcc780SMatthew G. Knepley Output Parameters: 2087bb7acecfSBarry Smith + is - The global indices for each of subproblem within the super `DM`, or NULL 2088bb7acecfSBarry Smith - superdm - The `DM` for the superproblem 20892adcc780SMatthew G. Knepley 2090bb7acecfSBarry Smith Note: 2091bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 20925d3b26e6SMatthew G. Knepley 20932adcc780SMatthew G. Knepley Level: intermediate 20942adcc780SMatthew G. Knepley 2095bb7acecfSBarry Smith .seealso: `DM`, `DMCreateSubDM()`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 20962adcc780SMatthew G. Knepley @*/ 2097d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSuperDM(DM dms[], PetscInt n, IS **is, DM *superdm) 2098d71ae5a4SJacob Faibussowitsch { 20992adcc780SMatthew G. Knepley PetscInt i; 21002adcc780SMatthew G. Knepley 21012adcc780SMatthew G. Knepley PetscFunctionBegin; 21022adcc780SMatthew G. Knepley PetscValidPointer(dms, 1); 2103ad540459SPierre Jolivet for (i = 0; i < n; ++i) PetscValidHeaderSpecific(dms[i], DM_CLASSID, 1); 21042adcc780SMatthew G. Knepley if (is) PetscValidPointer(is, 3); 2105a42bd24dSMatthew G. Knepley PetscValidPointer(superdm, 4); 2106bb7acecfSBarry Smith PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of DMs must be nonnegative: %" PetscInt_FMT, n); 2107bb7acecfSBarry Smith if (n) { 2108b9d85ea2SLisandro Dalcin DM dm = dms[0]; 2109dbbe0bcdSBarry Smith PetscCall((*dm->ops->createsuperdm)(dms, n, is, superdm)); 21102adcc780SMatthew G. Knepley } 21112adcc780SMatthew G. Knepley PetscFunctionReturn(0); 21122adcc780SMatthew G. Knepley } 21132adcc780SMatthew G. Knepley 211416621825SDmitry Karpeev /*@C 2115bb7acecfSBarry Smith DMCreateDomainDecomposition - Returns lists of `IS` objects defining a decomposition of a problem into subproblems 2116bb7acecfSBarry Smith corresponding to restrictions to pairs of nested subdomains: each `IS` contains the global 2117bb7acecfSBarry Smith indices of the dofs of the corresponding subdomains with in the dofs of the original `DM`. 2118bb7acecfSBarry Smith The inner subdomains conceptually define a nonoverlapping covering, while outer subdomains can overlap. 2119bb7acecfSBarry Smith The optional list of `DM`s define a `DM` for each subproblem. 212016621825SDmitry Karpeev 212116621825SDmitry Karpeev Not collective 212216621825SDmitry Karpeev 212316621825SDmitry Karpeev Input Parameter: 2124bb7acecfSBarry Smith . dm - the `DM` object 212516621825SDmitry Karpeev 212616621825SDmitry Karpeev Output Parameters: 2127bb7acecfSBarry Smith + n - The number of subproblems in the domain decomposition (or NULL if not requested) 21280298fd71SBarry Smith . namelist - The name for each subdomain (or NULL if not requested) 21290298fd71SBarry Smith . innerislist - The global indices for each inner subdomain (or NULL, if not requested) 21300298fd71SBarry Smith . outerislist - The global indices for each outer subdomain (or NULL, if not requested) 2131bb7acecfSBarry Smith - dmlist - The `DM`s for each subdomain subproblem (or NULL, if not requested; if NULL is returned, no `DM`s are defined) 213216621825SDmitry Karpeev 213316621825SDmitry Karpeev Level: intermediate 213416621825SDmitry Karpeev 2135bb7acecfSBarry Smith Note: 213616621825SDmitry Karpeev The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with 2137bb7acecfSBarry Smith `PetscFree()`, every entry of is should be destroyed with `ISDestroy()`, every entry of dm should be destroyed with `DMDestroy()`, 2138bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 213916621825SDmitry Karpeev 2140bb7acecfSBarry Smith Questions: 2141bb7acecfSBarry Smith The dmlist is for the inner subdomains or the outer subdomains or all subdomains? 2142bb7acecfSBarry Smith 2143bb7acecfSBarry Smith .seealso: `DMCreateFieldDecomposition()`, `DMDestroy()`, `DMCreateDomainDecompositionScatters()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldDecomposition()` 214416621825SDmitry Karpeev @*/ 2145d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecomposition(DM dm, PetscInt *n, char ***namelist, IS **innerislist, IS **outerislist, DM **dmlist) 2146d71ae5a4SJacob Faibussowitsch { 2147be081cd6SPeter Brune DMSubDomainHookLink link; 2148be081cd6SPeter Brune PetscInt i, l; 214916621825SDmitry Karpeev 215016621825SDmitry Karpeev PetscFunctionBegin; 215116621825SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 21529371c9d4SSatish Balay if (n) { 21539371c9d4SSatish Balay PetscValidIntPointer(n, 2); 21549371c9d4SSatish Balay *n = 0; 21559371c9d4SSatish Balay } 21569371c9d4SSatish Balay if (namelist) { 21579371c9d4SSatish Balay PetscValidPointer(namelist, 3); 21589371c9d4SSatish Balay *namelist = NULL; 21599371c9d4SSatish Balay } 21609371c9d4SSatish Balay if (innerislist) { 21619371c9d4SSatish Balay PetscValidPointer(innerislist, 4); 21629371c9d4SSatish Balay *innerislist = NULL; 21639371c9d4SSatish Balay } 21649371c9d4SSatish Balay if (outerislist) { 21659371c9d4SSatish Balay PetscValidPointer(outerislist, 5); 21669371c9d4SSatish Balay *outerislist = NULL; 21679371c9d4SSatish Balay } 21689371c9d4SSatish Balay if (dmlist) { 21699371c9d4SSatish Balay PetscValidPointer(dmlist, 6); 21709371c9d4SSatish Balay *dmlist = NULL; 21719371c9d4SSatish Balay } 2172f3f0edfdSDmitry Karpeev /* 2173f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2174f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2175f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2176f3f0edfdSDmitry Karpeev */ 21777a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 217816621825SDmitry Karpeev if (dm->ops->createdomaindecomposition) { 2179dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createdomaindecomposition, &l, namelist, innerislist, outerislist, dmlist); 218014a18fd3SPeter Brune /* copy subdomain hooks and context over to the subdomain DMs */ 2181f891f5b9SPatrick Sanan if (dmlist && *dmlist) { 2182be081cd6SPeter Brune for (i = 0; i < l; i++) { 2183be081cd6SPeter Brune for (link = dm->subdomainhook; link; link = link->next) { 21849566063dSJacob Faibussowitsch if (link->ddhook) PetscCall((*link->ddhook)(dm, (*dmlist)[i], link->ctx)); 2185be081cd6SPeter Brune } 2186648262bbSPatrick Sanan if (dm->ctx) (*dmlist)[i]->ctx = dm->ctx; 2187e7c4fc90SDmitry Karpeev } 218814a18fd3SPeter Brune } 2189bb7acecfSBarry Smith if (n) *n = l; 219014a18fd3SPeter Brune } 2191e30e807fSPeter Brune PetscFunctionReturn(0); 2192e30e807fSPeter Brune } 2193e30e807fSPeter Brune 2194e30e807fSPeter Brune /*@C 2195e30e807fSPeter Brune DMCreateDomainDecompositionScatters - Returns scatters to the subdomain vectors from the global vector 2196e30e807fSPeter Brune 2197e30e807fSPeter Brune Not collective 2198e30e807fSPeter Brune 2199e30e807fSPeter Brune Input Parameters: 2200bb7acecfSBarry Smith + dm - the `DM` object 2201e30e807fSPeter Brune . n - the number of subdomain scatters 2202e30e807fSPeter Brune - subdms - the local subdomains 2203e30e807fSPeter Brune 2204e30e807fSPeter Brune Output Parameters: 22056b867d5aSJose E. Roman + iscat - scatter from global vector to nonoverlapping global vector entries on subdomain 2206e30e807fSPeter Brune . oscat - scatter from global vector to overlapping global vector entries on subdomain 2207e30e807fSPeter Brune - gscat - scatter from global vector to local vector on subdomain (fills in ghosts) 2208e30e807fSPeter Brune 2209bb7acecfSBarry Smith Note: 2210bb7acecfSBarry Smith This is an alternative to the iis and ois arguments in `DMCreateDomainDecomposition()` that allow for the solution 2211e30e807fSPeter Brune of general nonlinear problems with overlapping subdomain methods. While merely having index sets that enable subsets 2212e30e807fSPeter Brune of the residual equations to be created is fine for linear problems, nonlinear problems require local assembly of 2213e30e807fSPeter Brune solution and residual data. 2214e30e807fSPeter Brune 2215bb7acecfSBarry Smith Questions: 2216bb7acecfSBarry Smith Can the subdms input be anything or are they exactly the `DM` obtained from `DMCreateDomainDecomposition()`? 2217bb7acecfSBarry Smith 2218e30e807fSPeter Brune Level: developer 2219e30e807fSPeter Brune 2220bb7acecfSBarry Smith .seealso: `DM`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 2221e30e807fSPeter Brune @*/ 2222d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecompositionScatters(DM dm, PetscInt n, DM *subdms, VecScatter **iscat, VecScatter **oscat, VecScatter **gscat) 2223d71ae5a4SJacob Faibussowitsch { 2224e30e807fSPeter Brune PetscFunctionBegin; 2225e30e807fSPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2226e30e807fSPeter Brune PetscValidPointer(subdms, 3); 2227dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createddscatters, n, subdms, iscat, oscat, gscat); 2228e7c4fc90SDmitry Karpeev PetscFunctionReturn(0); 2229e7c4fc90SDmitry Karpeev } 2230e7c4fc90SDmitry Karpeev 223147c6ae99SBarry Smith /*@ 2232bb7acecfSBarry Smith DMRefine - Refines a `DM` object using a standard nonadaptive refinement of the underlying mesh 223347c6ae99SBarry Smith 2234d083f849SBarry Smith Collective on dm 223547c6ae99SBarry Smith 2236d8d19677SJose E. Roman Input Parameters: 2237bb7acecfSBarry Smith + dm - the `DM` object 2238bb7acecfSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`) 223947c6ae99SBarry Smith 224047c6ae99SBarry Smith Output Parameter: 2241bb7acecfSBarry Smith . dmf - the refined `D`M, or NULL 2242ae0a1c52SMatthew G Knepley 2243f27dd7c6SMatthew G. Knepley Options Database Keys: 2244412e9a14SMatthew G. Knepley . -dm_plex_cell_refiner <strategy> - chooses the refinement strategy, e.g. regular, tohex 2245412e9a14SMatthew G. Knepley 2246bb7acecfSBarry Smith Note: 2247bb7acecfSBarry Smith If no refinement was done, the return value is NULL 224847c6ae99SBarry Smith 224947c6ae99SBarry Smith Level: developer 225047c6ae99SBarry Smith 2251bb7acecfSBarry Smith .seealso: `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 225247c6ae99SBarry Smith @*/ 2253d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefine(DM dm, MPI_Comm comm, DM *dmf) 2254d71ae5a4SJacob Faibussowitsch { 2255c833c3b5SJed Brown DMRefineHookLink link; 225647c6ae99SBarry Smith 225747c6ae99SBarry Smith PetscFunctionBegin; 2258732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 22599566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Refine, dm, 0, 0, 0)); 2260dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, refine, comm, dmf); 22614057135bSMatthew G Knepley if (*dmf) { 226243842a1eSJed Brown (*dmf)->ops->creatematrix = dm->ops->creatematrix; 22638865f1eaSKarl Rupp 22649566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmf)); 22658865f1eaSKarl Rupp 2266644e2e5bSBarry Smith (*dmf)->ctx = dm->ctx; 22670598a293SJed Brown (*dmf)->leveldown = dm->leveldown; 2268656b349aSBarry Smith (*dmf)->levelup = dm->levelup + 1; 22698865f1eaSKarl Rupp 22709566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmf, dm->mattype)); 2271c833c3b5SJed Brown for (link = dm->refinehook; link; link = link->next) { 22721baa6e33SBarry Smith if (link->refinehook) PetscCall((*link->refinehook)(dm, *dmf, link->ctx)); 2273c833c3b5SJed Brown } 2274c833c3b5SJed Brown } 22759566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Refine, dm, 0, 0, 0)); 2276c833c3b5SJed Brown PetscFunctionReturn(0); 2277c833c3b5SJed Brown } 2278c833c3b5SJed Brown 2279bb9467b5SJed Brown /*@C 2280c833c3b5SJed Brown DMRefineHookAdd - adds a callback to be run when interpolating a nonlinear problem to a finer grid 2281c833c3b5SJed Brown 2282bb7acecfSBarry Smith Logically Collective on coarse 2283c833c3b5SJed Brown 22844165533cSJose E. Roman Input Parameters: 2285bb7acecfSBarry Smith + coarse - `DM` on which to run a hook when interpolating to a finer level 2286bb7acecfSBarry Smith . refinehook - function to run when setting up the finer level 2287bb7acecfSBarry Smith . interphook - function to run to update data on finer levels (once per `SNESSolve`()) 22880298fd71SBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be NULL) 2289c833c3b5SJed Brown 2290c833c3b5SJed Brown Calling sequence of refinehook: 2291c833c3b5SJed Brown $ refinehook(DM coarse,DM fine,void *ctx); 2292c833c3b5SJed Brown 2293bb7acecfSBarry Smith + coarse - coarse level `DM` 2294bb7acecfSBarry Smith . fine - fine level `DM` to interpolate problem to 2295c833c3b5SJed Brown - ctx - optional user-defined function context 2296c833c3b5SJed Brown 2297c833c3b5SJed Brown Calling sequence for interphook: 2298c833c3b5SJed Brown $ interphook(DM coarse,Mat interp,DM fine,void *ctx) 2299c833c3b5SJed Brown 2300bb7acecfSBarry Smith + coarse - coarse level `DM` 2301c833c3b5SJed Brown . interp - matrix interpolating a coarse-level solution to the finer grid 2302bb7acecfSBarry Smith . fine - fine level `DM` to update 2303c833c3b5SJed Brown - ctx - optional user-defined function context 2304c833c3b5SJed Brown 2305c833c3b5SJed Brown Level: advanced 2306c833c3b5SJed Brown 2307c833c3b5SJed Brown Notes: 2308bb7acecfSBarry Smith This function is only needed if auxiliary data that is attached to the `DM`s via, for example, `PetscObjectCompose()`, needs to be 2309bb7acecfSBarry Smith passed to fine grids while grid sequencing. 2310bb7acecfSBarry Smith 2311bb7acecfSBarry Smith The actual interpolation is done when `DMInterpolate()` is called. 2312c833c3b5SJed Brown 2313c833c3b5SJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 2314c833c3b5SJed Brown 2315bb7acecfSBarry Smith Fortran Note: 2316bb7acecfSBarry Smith This function is not available from Fortran. 2317bb9467b5SJed Brown 2318bb7acecfSBarry Smith .seealso: `DM`, `DMCoarsenHookAdd()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2319c833c3b5SJed Brown @*/ 2320d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookAdd(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx) 2321d71ae5a4SJacob Faibussowitsch { 2322c833c3b5SJed Brown DMRefineHookLink link, *p; 2323c833c3b5SJed Brown 2324c833c3b5SJed Brown PetscFunctionBegin; 2325c833c3b5SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 23263d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 23273d8e3701SJed Brown if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) PetscFunctionReturn(0); 23283d8e3701SJed Brown } 23299566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2330c833c3b5SJed Brown link->refinehook = refinehook; 2331c833c3b5SJed Brown link->interphook = interphook; 2332c833c3b5SJed Brown link->ctx = ctx; 23330298fd71SBarry Smith link->next = NULL; 2334c833c3b5SJed Brown *p = link; 2335c833c3b5SJed Brown PetscFunctionReturn(0); 2336c833c3b5SJed Brown } 2337c833c3b5SJed Brown 23383d8e3701SJed Brown /*@C 2339bb7acecfSBarry Smith DMRefineHookRemove - remove a callback from the list of hooks, that have been set with `DMRefineHookAdd()`, to be run when interpolating 2340bb7acecfSBarry Smith a nonlinear problem to a finer grid 23413d8e3701SJed Brown 2342bb7acecfSBarry Smith Logically Collective on coarse 23433d8e3701SJed Brown 23444165533cSJose E. Roman Input Parameters: 2345bb7acecfSBarry Smith + coarse - the `DM` on which to run a hook when restricting to a coarser level 2346bb7acecfSBarry Smith . refinehook - function to run when setting up a finer level 2347bb7acecfSBarry Smith . interphook - function to run to update data on finer levels 23483d8e3701SJed Brown - ctx - [optional] user-defined context for provide data for the hooks (may be NULL) 23493d8e3701SJed Brown 23503d8e3701SJed Brown Level: advanced 23513d8e3701SJed Brown 2352bb7acecfSBarry Smith Note: 23533d8e3701SJed Brown This function does nothing if the hook is not in the list. 23543d8e3701SJed Brown 2355bb7acecfSBarry Smith Fortran Note: 2356bb7acecfSBarry Smith This function is not available from Fortran. 23573d8e3701SJed Brown 2358bb7acecfSBarry Smith .seealso: `DMRefineHookAdd()`, `DMCoarsenHookRemove()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 23593d8e3701SJed Brown @*/ 2360d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookRemove(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx) 2361d71ae5a4SJacob Faibussowitsch { 23623d8e3701SJed Brown DMRefineHookLink link, *p; 23633d8e3701SJed Brown 23643d8e3701SJed Brown PetscFunctionBegin; 23653d8e3701SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 23663d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 23673d8e3701SJed Brown if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) { 23683d8e3701SJed Brown link = *p; 23693d8e3701SJed Brown *p = link->next; 23709566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 23713d8e3701SJed Brown break; 23723d8e3701SJed Brown } 23733d8e3701SJed Brown } 23743d8e3701SJed Brown PetscFunctionReturn(0); 23753d8e3701SJed Brown } 23763d8e3701SJed Brown 2377c833c3b5SJed Brown /*@ 2378bb7acecfSBarry Smith DMInterpolate - interpolates user-defined problem data attached to a `DM` to a finer `DM` by running hooks registered by `DMRefineHookAdd()` 2379c833c3b5SJed Brown 2380c833c3b5SJed Brown Collective if any hooks are 2381c833c3b5SJed Brown 23824165533cSJose E. Roman Input Parameters: 2383bb7acecfSBarry Smith + coarse - coarser `DM` to use as a base 2384bb7acecfSBarry Smith . interp - interpolation matrix, apply using `MatInterpolate()` 2385bb7acecfSBarry Smith - fine - finer `DM` to update 2386c833c3b5SJed Brown 2387c833c3b5SJed Brown Level: developer 2388c833c3b5SJed Brown 2389bb7acecfSBarry Smith Developer Note: 2390bb7acecfSBarry Smith This routine is called `DMInterpolate()` while the hook is called `DMRefineHookAdd()`. It would be better to have an 2391bb7acecfSBarry Smith an API with consistent terminology. 2392bb7acecfSBarry Smith 2393bb7acecfSBarry Smith .seealso: `DM`, `DMRefineHookAdd()`, `MatInterpolate()` 2394c833c3b5SJed Brown @*/ 2395d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolate(DM coarse, Mat interp, DM fine) 2396d71ae5a4SJacob Faibussowitsch { 2397c833c3b5SJed Brown DMRefineHookLink link; 2398c833c3b5SJed Brown 2399c833c3b5SJed Brown PetscFunctionBegin; 2400c833c3b5SJed Brown for (link = fine->refinehook; link; link = link->next) { 24011baa6e33SBarry Smith if (link->interphook) PetscCall((*link->interphook)(coarse, interp, fine, link->ctx)); 24024057135bSMatthew G Knepley } 240347c6ae99SBarry Smith PetscFunctionReturn(0); 240447c6ae99SBarry Smith } 240547c6ae99SBarry Smith 2406eb3f98d2SBarry Smith /*@ 24071f3379b2SToby Isaac DMInterpolateSolution - Interpolates a solution from a coarse mesh to a fine mesh. 24081f3379b2SToby Isaac 2409bb7acecfSBarry Smith Collective on dm 24101f3379b2SToby Isaac 24114165533cSJose E. Roman Input Parameters: 2412bb7acecfSBarry Smith + coarse - coarse `DM` 2413bb7acecfSBarry Smith . fine - fine `DM` 2414bb7acecfSBarry Smith . interp - (optional) the matrix computed by `DMCreateInterpolation()`. Implementations may not need this, but if it 2415bb7acecfSBarry Smith is available it can avoid some recomputation. If it is provided, `MatInterpolate()` will be used if 2416bb7acecfSBarry Smith the coarse `DM` does not have a specialized implementation. 24171f3379b2SToby Isaac - coarseSol - solution on the coarse mesh 24181f3379b2SToby Isaac 24194165533cSJose E. Roman Output Parameter: 24201f3379b2SToby Isaac . fineSol - the interpolation of coarseSol to the fine mesh 24211f3379b2SToby Isaac 24221f3379b2SToby Isaac Level: developer 24231f3379b2SToby Isaac 2424bb7acecfSBarry Smith Note: 2425bb7acecfSBarry Smith This function exists because the interpolation of a solution vector between meshes is not always a linear 24261f3379b2SToby Isaac map. For example, if a boundary value problem has an inhomogeneous Dirichlet boundary condition that is compressed 24271f3379b2SToby Isaac out of the solution vector. Or if interpolation is inherently a nonlinear operation, such as a method using 24281f3379b2SToby Isaac slope-limiting reconstruction. 24291f3379b2SToby Isaac 2430bb7acecfSBarry Smith Developer Note: 2431bb7acecfSBarry Smith This doesn't just interpolate "solutions" so its API name is questionable. 2432bb7acecfSBarry Smith 2433bb7acecfSBarry Smith .seealso: `DMInterpolate()`, `DMCreateInterpolation()` 24341f3379b2SToby Isaac @*/ 2435d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolateSolution(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol) 2436d71ae5a4SJacob Faibussowitsch { 24371f3379b2SToby Isaac PetscErrorCode (*interpsol)(DM, DM, Mat, Vec, Vec) = NULL; 24381f3379b2SToby Isaac 24391f3379b2SToby Isaac PetscFunctionBegin; 24401f3379b2SToby Isaac PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 24411f3379b2SToby Isaac if (interp) PetscValidHeaderSpecific(interp, MAT_CLASSID, 3); 24421f3379b2SToby Isaac PetscValidHeaderSpecific(coarseSol, VEC_CLASSID, 4); 24431f3379b2SToby Isaac PetscValidHeaderSpecific(fineSol, VEC_CLASSID, 5); 24441f3379b2SToby Isaac 24459566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)coarse, "DMInterpolateSolution_C", &interpsol)); 24461f3379b2SToby Isaac if (interpsol) { 24479566063dSJacob Faibussowitsch PetscCall((*interpsol)(coarse, fine, interp, coarseSol, fineSol)); 24481f3379b2SToby Isaac } else if (interp) { 24499566063dSJacob Faibussowitsch PetscCall(MatInterpolate(interp, coarseSol, fineSol)); 245098921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)coarse), PETSC_ERR_SUP, "DM %s does not implement DMInterpolateSolution()", ((PetscObject)coarse)->type_name); 24511f3379b2SToby Isaac PetscFunctionReturn(0); 24521f3379b2SToby Isaac } 24531f3379b2SToby Isaac 24541f3379b2SToby Isaac /*@ 2455bb7acecfSBarry Smith DMGetRefineLevel - Gets the number of refinements that have generated this `DM` from some initial `DM`. 2456eb3f98d2SBarry Smith 2457eb3f98d2SBarry Smith Not Collective 2458eb3f98d2SBarry Smith 2459eb3f98d2SBarry Smith Input Parameter: 2460bb7acecfSBarry Smith . dm - the `DM` object 2461eb3f98d2SBarry Smith 2462eb3f98d2SBarry Smith Output Parameter: 2463eb3f98d2SBarry Smith . level - number of refinements 2464eb3f98d2SBarry Smith 2465eb3f98d2SBarry Smith Level: developer 2466eb3f98d2SBarry Smith 2467bb7acecfSBarry Smith Note: 2468bb7acecfSBarry Smith This can be used, by example, to set the number of coarser levels associated with this `DM` for a multigrid solver. 2469bb7acecfSBarry Smith 2470bb7acecfSBarry Smith .seealso: `DMRefine()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2471eb3f98d2SBarry Smith 2472eb3f98d2SBarry Smith @*/ 2473d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRefineLevel(DM dm, PetscInt *level) 2474d71ae5a4SJacob Faibussowitsch { 2475eb3f98d2SBarry Smith PetscFunctionBegin; 2476eb3f98d2SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2477eb3f98d2SBarry Smith *level = dm->levelup; 2478eb3f98d2SBarry Smith PetscFunctionReturn(0); 2479eb3f98d2SBarry Smith } 2480eb3f98d2SBarry Smith 2481fef3a512SBarry Smith /*@ 2482bb7acecfSBarry Smith DMSetRefineLevel - Sets the number of refinements that have generated this `DM`. 2483fef3a512SBarry Smith 2484fef3a512SBarry Smith Not Collective 2485fef3a512SBarry Smith 2486d8d19677SJose E. Roman Input Parameters: 2487bb7acecfSBarry Smith + dm - the `DM` object 2488fef3a512SBarry Smith - level - number of refinements 2489fef3a512SBarry Smith 2490fef3a512SBarry Smith Level: advanced 2491fef3a512SBarry Smith 249295452b02SPatrick Sanan Notes: 2493bb7acecfSBarry Smith This value is used by `PCMG` to determine how many multigrid levels to use 2494fef3a512SBarry Smith 2495bb7acecfSBarry Smith The values are usually set automatically by the process that is causing the refinements of an initial `DM` by calling this routine. 2496bb7acecfSBarry Smith 2497bb7acecfSBarry Smith .seealso: `DMGetRefineLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2498fef3a512SBarry Smith 2499fef3a512SBarry Smith @*/ 2500d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRefineLevel(DM dm, PetscInt level) 2501d71ae5a4SJacob Faibussowitsch { 2502fef3a512SBarry Smith PetscFunctionBegin; 2503fef3a512SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2504fef3a512SBarry Smith dm->levelup = level; 2505fef3a512SBarry Smith PetscFunctionReturn(0); 2506fef3a512SBarry Smith } 2507fef3a512SBarry Smith 2508d410b0cfSMatthew G. Knepley /*@ 2509bb7acecfSBarry Smith DMExtrude - Extrude a `DM` object from a surface 2510d410b0cfSMatthew G. Knepley 2511d410b0cfSMatthew G. Knepley Collective on dm 2512d410b0cfSMatthew G. Knepley 2513f1a722f8SMatthew G. Knepley Input Parameters: 2514bb7acecfSBarry Smith + dm - the `DM` object 2515d410b0cfSMatthew G. Knepley - layers - the number of extruded cell layers 2516d410b0cfSMatthew G. Knepley 2517d410b0cfSMatthew G. Knepley Output Parameter: 2518bb7acecfSBarry Smith . dme - the extruded `DM`, or NULL 2519d410b0cfSMatthew G. Knepley 2520bb7acecfSBarry Smith Note: 2521bb7acecfSBarry Smith If no extrusion was done, the return value is NULL 2522d410b0cfSMatthew G. Knepley 2523d410b0cfSMatthew G. Knepley Level: developer 2524d410b0cfSMatthew G. Knepley 2525bb7acecfSBarry Smith .seealso: `DMRefine()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()` 2526d410b0cfSMatthew G. Knepley @*/ 2527d71ae5a4SJacob Faibussowitsch PetscErrorCode DMExtrude(DM dm, PetscInt layers, DM *dme) 2528d71ae5a4SJacob Faibussowitsch { 2529d410b0cfSMatthew G. Knepley PetscFunctionBegin; 2530d410b0cfSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2531dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, extrude, layers, dme); 2532d410b0cfSMatthew G. Knepley if (*dme) { 2533d410b0cfSMatthew G. Knepley (*dme)->ops->creatematrix = dm->ops->creatematrix; 25349566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dme)); 2535d410b0cfSMatthew G. Knepley (*dme)->ctx = dm->ctx; 25369566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dme, dm->mattype)); 2537d410b0cfSMatthew G. Knepley } 2538d410b0cfSMatthew G. Knepley PetscFunctionReturn(0); 2539d410b0cfSMatthew G. Knepley } 2540d410b0cfSMatthew G. Knepley 2541d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformDM_Internal(DM dm, DM *tdm) 2542d71ae5a4SJacob Faibussowitsch { 2543ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2544ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2545ca3d3a14SMatthew G. Knepley PetscValidPointer(tdm, 2); 2546ca3d3a14SMatthew G. Knepley *tdm = dm->transformDM; 2547ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 2548ca3d3a14SMatthew G. Knepley } 2549ca3d3a14SMatthew G. Knepley 2550d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformVec_Internal(DM dm, Vec *tv) 2551d71ae5a4SJacob Faibussowitsch { 2552ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2553ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2554ca3d3a14SMatthew G. Knepley PetscValidPointer(tv, 2); 2555ca3d3a14SMatthew G. Knepley *tv = dm->transform; 2556ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 2557ca3d3a14SMatthew G. Knepley } 2558ca3d3a14SMatthew G. Knepley 2559ca3d3a14SMatthew G. Knepley /*@ 2560bb7acecfSBarry Smith DMHasBasisTransform - Whether the `DM` employs a basis transformation from functions in global vectors to functions in local vectors 2561ca3d3a14SMatthew G. Knepley 2562ca3d3a14SMatthew G. Knepley Input Parameter: 2563ca3d3a14SMatthew G. Knepley . dm - The DM 2564ca3d3a14SMatthew G. Knepley 2565ca3d3a14SMatthew G. Knepley Output Parameter: 2566ca3d3a14SMatthew G. Knepley . flg - PETSC_TRUE if a basis transformation should be done 2567ca3d3a14SMatthew G. Knepley 2568ca3d3a14SMatthew G. Knepley Level: developer 2569ca3d3a14SMatthew G. Knepley 2570bb7acecfSBarry Smith .seealso: `DM`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`, `DMPlexCreateBasisRotation()` 2571ca3d3a14SMatthew G. Knepley @*/ 2572d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasBasisTransform(DM dm, PetscBool *flg) 2573d71ae5a4SJacob Faibussowitsch { 2574ca3d3a14SMatthew G. Knepley Vec tv; 2575ca3d3a14SMatthew G. Knepley 2576ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2577ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2578534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 25799566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 2580ca3d3a14SMatthew G. Knepley *flg = tv ? PETSC_TRUE : PETSC_FALSE; 2581ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 2582ca3d3a14SMatthew G. Knepley } 2583ca3d3a14SMatthew G. Knepley 2584d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConstructBasisTransform_Internal(DM dm) 2585d71ae5a4SJacob Faibussowitsch { 2586ca3d3a14SMatthew G. Knepley PetscSection s, ts; 2587ca3d3a14SMatthew G. Knepley PetscScalar *ta; 2588ca3d3a14SMatthew G. Knepley PetscInt cdim, pStart, pEnd, p, Nf, f, Nc, dof; 2589ca3d3a14SMatthew G. Knepley 2590ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 25919566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 25929566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 25939566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 25949566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 25959566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->transformDM)); 25969566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm->transformDM, &ts)); 25979566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(ts, Nf)); 25989566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(ts, pStart, pEnd)); 2599ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26009566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(s, f, &Nc)); 2601ca3d3a14SMatthew G. Knepley /* We could start to label fields by their transformation properties */ 2602ca3d3a14SMatthew G. Knepley if (Nc != cdim) continue; 2603ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 26049566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, p, f, &dof)); 2605ca3d3a14SMatthew G. Knepley if (!dof) continue; 26069566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(ts, p, f, PetscSqr(cdim))); 26079566063dSJacob Faibussowitsch PetscCall(PetscSectionAddDof(ts, p, PetscSqr(cdim))); 2608ca3d3a14SMatthew G. Knepley } 2609ca3d3a14SMatthew G. Knepley } 26109566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(ts)); 26119566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(dm->transformDM, &dm->transform)); 26129566063dSJacob Faibussowitsch PetscCall(VecGetArray(dm->transform, &ta)); 2613ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 2614ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26159566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof)); 2616ca3d3a14SMatthew G. Knepley if (dof) { 2617ca3d3a14SMatthew G. Knepley PetscReal x[3] = {0.0, 0.0, 0.0}; 2618ca3d3a14SMatthew G. Knepley PetscScalar *tva; 2619ca3d3a14SMatthew G. Knepley const PetscScalar *A; 2620ca3d3a14SMatthew G. Knepley 2621ca3d3a14SMatthew G. Knepley /* TODO Get quadrature point for this dual basis vector for coordinate */ 26229566063dSJacob Faibussowitsch PetscCall((*dm->transformGetMatrix)(dm, x, PETSC_TRUE, &A, dm->transformCtx)); 26239566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm->transformDM, p, f, ta, (void *)&tva)); 26249566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tva, A, PetscSqr(cdim))); 2625ca3d3a14SMatthew G. Knepley } 2626ca3d3a14SMatthew G. Knepley } 2627ca3d3a14SMatthew G. Knepley } 26289566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(dm->transform, &ta)); 2629ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 2630ca3d3a14SMatthew G. Knepley } 2631ca3d3a14SMatthew G. Knepley 2632d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyTransform(DM dm, DM newdm) 2633d71ae5a4SJacob Faibussowitsch { 2634ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2635ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2636ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(newdm, DM_CLASSID, 2); 2637ca3d3a14SMatthew G. Knepley newdm->transformCtx = dm->transformCtx; 2638ca3d3a14SMatthew G. Knepley newdm->transformSetUp = dm->transformSetUp; 2639ca3d3a14SMatthew G. Knepley newdm->transformDestroy = NULL; 2640ca3d3a14SMatthew G. Knepley newdm->transformGetMatrix = dm->transformGetMatrix; 26419566063dSJacob Faibussowitsch if (newdm->transformSetUp) PetscCall(DMConstructBasisTransform_Internal(newdm)); 2642ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 2643ca3d3a14SMatthew G. Knepley } 2644ca3d3a14SMatthew G. Knepley 2645bb9467b5SJed Brown /*@C 2646bb7acecfSBarry Smith DMGlobalToLocalHookAdd - adds a callback to be run when `DMGlobalToLocal()` is called 2647baf369e7SPeter Brune 2648bb7acecfSBarry Smith Logically Collective on dm 2649baf369e7SPeter Brune 26504165533cSJose E. Roman Input Parameters: 2651bb7acecfSBarry Smith + dm - the `DM` 2652bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMGlobalToLocalBegin()` 2653bb7acecfSBarry Smith . endhook - function to run after `DMGlobalToLocalEnd()` has completed 26540298fd71SBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be NULL) 2655baf369e7SPeter Brune 2656baf369e7SPeter Brune Calling sequence for beginhook: 2657baf369e7SPeter Brune $ beginhook(DM fine,VecScatter out,VecScatter in,DM coarse,void *ctx) 2658baf369e7SPeter Brune 2659baf369e7SPeter Brune + dm - global DM 2660baf369e7SPeter Brune . g - global vector 2661baf369e7SPeter Brune . mode - mode 2662baf369e7SPeter Brune . l - local vector 2663baf369e7SPeter Brune - ctx - optional user-defined function context 2664baf369e7SPeter Brune 2665baf369e7SPeter Brune Calling sequence for endhook: 2666ec4806b8SPeter Brune $ endhook(DM fine,VecScatter out,VecScatter in,DM coarse,void *ctx) 2667baf369e7SPeter Brune 2668baf369e7SPeter Brune + global - global DM 2669baf369e7SPeter Brune - ctx - optional user-defined function context 2670baf369e7SPeter Brune 2671baf369e7SPeter Brune Level: advanced 2672baf369e7SPeter Brune 2673bb7acecfSBarry Smith Note: 2674bb7acecfSBarry Smith The hook may be used to provide, for example, values that represent boundary conditions in the local vectors that do not exist on the global vector. 2675bb7acecfSBarry Smith 2676bb7acecfSBarry Smith .seealso: `DM`, `DMGlobalToLocal()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2677baf369e7SPeter Brune @*/ 2678d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM, Vec, InsertMode, Vec, void *), PetscErrorCode (*endhook)(DM, Vec, InsertMode, Vec, void *), void *ctx) 2679d71ae5a4SJacob Faibussowitsch { 2680baf369e7SPeter Brune DMGlobalToLocalHookLink link, *p; 2681baf369e7SPeter Brune 2682baf369e7SPeter Brune PetscFunctionBegin; 2683baf369e7SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2684baf369e7SPeter Brune for (p = &dm->gtolhook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 26859566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2686baf369e7SPeter Brune link->beginhook = beginhook; 2687baf369e7SPeter Brune link->endhook = endhook; 2688baf369e7SPeter Brune link->ctx = ctx; 26890298fd71SBarry Smith link->next = NULL; 2690baf369e7SPeter Brune *p = link; 2691baf369e7SPeter Brune PetscFunctionReturn(0); 2692baf369e7SPeter Brune } 2693baf369e7SPeter Brune 2694d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGlobalToLocalHook_Constraints(DM dm, Vec g, InsertMode mode, Vec l, void *ctx) 2695d71ae5a4SJacob Faibussowitsch { 26964c274da1SToby Isaac Mat cMat; 269779769bd5SJed Brown Vec cVec, cBias; 26984c274da1SToby Isaac PetscSection section, cSec; 26994c274da1SToby Isaac PetscInt pStart, pEnd, p, dof; 27004c274da1SToby Isaac 27014c274da1SToby Isaac PetscFunctionBegin; 27024c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 27039566063dSJacob Faibussowitsch PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, &cBias)); 27044c274da1SToby Isaac if (cMat && (mode == INSERT_VALUES || mode == INSERT_ALL_VALUES || mode == INSERT_BC_VALUES)) { 27055db9a05bSToby Isaac PetscInt nRows; 27065db9a05bSToby Isaac 27079566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 27085db9a05bSToby Isaac if (nRows <= 0) PetscFunctionReturn(0); 27099566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 27109566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 27119566063dSJacob Faibussowitsch PetscCall(MatMult(cMat, l, cVec)); 27129566063dSJacob Faibussowitsch if (cBias) PetscCall(VecAXPY(cVec, 1., cBias)); 27139566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 27144c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 27159566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 27164c274da1SToby Isaac if (dof) { 27174c274da1SToby Isaac PetscScalar *vals; 27189566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(cVec, cSec, p, &vals)); 27199566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(l, section, p, vals, INSERT_ALL_VALUES)); 27204c274da1SToby Isaac } 27214c274da1SToby Isaac } 27229566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 27234c274da1SToby Isaac } 27244c274da1SToby Isaac PetscFunctionReturn(0); 27254c274da1SToby Isaac } 27264c274da1SToby Isaac 272747c6ae99SBarry Smith /*@ 272801729b5cSPatrick Sanan DMGlobalToLocal - update local vectors from global vector 272901729b5cSPatrick Sanan 2730d083f849SBarry Smith Neighbor-wise Collective on dm 273101729b5cSPatrick Sanan 273201729b5cSPatrick Sanan Input Parameters: 2733bb7acecfSBarry Smith + dm - the `DM` object 273401729b5cSPatrick Sanan . g - the global vector 2735bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 273601729b5cSPatrick Sanan - l - the local vector 273701729b5cSPatrick Sanan 273801729b5cSPatrick Sanan Notes: 2739bb7acecfSBarry Smith The communication involved in this update can be overlapped with computation by instead using 2740bb7acecfSBarry Smith `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()`. 2741bb7acecfSBarry Smith 2742bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 274301729b5cSPatrick Sanan 274401729b5cSPatrick Sanan Level: beginner 274501729b5cSPatrick Sanan 2746bb7acecfSBarry Smith .seealso: `DM`, `DMGlobalToLocalHookAdd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, 2747bb7acecfSBarry Smith `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, 2748bb7acecfSBarry Smith `DMGlobalToLocalBegin()` `DMGlobalToLocalEnd()` 274901729b5cSPatrick Sanan 275001729b5cSPatrick Sanan @*/ 2751d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocal(DM dm, Vec g, InsertMode mode, Vec l) 2752d71ae5a4SJacob Faibussowitsch { 275301729b5cSPatrick Sanan PetscFunctionBegin; 27549566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, g, mode, l)); 27559566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, g, mode, l)); 275601729b5cSPatrick Sanan PetscFunctionReturn(0); 275701729b5cSPatrick Sanan } 275801729b5cSPatrick Sanan 275901729b5cSPatrick Sanan /*@ 276047c6ae99SBarry Smith DMGlobalToLocalBegin - Begins updating local vectors from global vector 276147c6ae99SBarry Smith 2762d083f849SBarry Smith Neighbor-wise Collective on dm 276347c6ae99SBarry Smith 276447c6ae99SBarry Smith Input Parameters: 2765bb7acecfSBarry Smith + dm - the `DM` object 276647c6ae99SBarry Smith . g - the global vector 2767bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 276847c6ae99SBarry Smith - l - the local vector 276947c6ae99SBarry Smith 277001729b5cSPatrick Sanan Level: intermediate 277147c6ae99SBarry Smith 2772bb7acecfSBarry Smith Notes: 2773bb7acecfSBarry Smith The operation is completed with `DMGlobalToLocalEnd()` 2774bb7acecfSBarry Smith 2775bb7acecfSBarry Smith One can perform local computations between the `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` to overlap communication and computation 2776bb7acecfSBarry Smith 2777bb7acecfSBarry Smith `DMGlobalToLocal()` is a short form of `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` 2778bb7acecfSBarry Smith 2779bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 2780bb7acecfSBarry Smith 2781bb7acecfSBarry Smith .seealso: `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()` 278247c6ae99SBarry Smith 278347c6ae99SBarry Smith @*/ 2784d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 2785d71ae5a4SJacob Faibussowitsch { 27867128ae9fSMatthew G Knepley PetscSF sf; 2787baf369e7SPeter Brune DMGlobalToLocalHookLink link; 278847c6ae99SBarry Smith 278947c6ae99SBarry Smith PetscFunctionBegin; 2790171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2791baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 27921baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, g, mode, l, link->ctx)); 2793baf369e7SPeter Brune } 27949566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 27957128ae9fSMatthew G Knepley if (sf) { 2796ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2797ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2798d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 27997128ae9fSMatthew G Knepley 28007a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 28019566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 28029566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 28039566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(sf, MPIU_SCALAR, gmtype, gArray, lmtype, lArray, MPI_REPLACE)); 28049566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 28059566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 28067128ae9fSMatthew G Knepley } else { 28079566063dSJacob Faibussowitsch PetscCall((*dm->ops->globaltolocalbegin)(dm, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l)); 28087128ae9fSMatthew G Knepley } 280947c6ae99SBarry Smith PetscFunctionReturn(0); 281047c6ae99SBarry Smith } 281147c6ae99SBarry Smith 281247c6ae99SBarry Smith /*@ 281347c6ae99SBarry Smith DMGlobalToLocalEnd - Ends updating local vectors from global vector 281447c6ae99SBarry Smith 2815d083f849SBarry Smith Neighbor-wise Collective on dm 281647c6ae99SBarry Smith 281747c6ae99SBarry Smith Input Parameters: 2818bb7acecfSBarry Smith + dm - the `DM` object 281947c6ae99SBarry Smith . g - the global vector 2820bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 282147c6ae99SBarry Smith - l - the local vector 282247c6ae99SBarry Smith 282301729b5cSPatrick Sanan Level: intermediate 282447c6ae99SBarry Smith 2825bb7acecfSBarry Smith Note: 2826bb7acecfSBarry Smith See `DMGlobalToLocalBegin()` for details. 2827bb7acecfSBarry Smith 2828bb7acecfSBarry Smith .seealso: `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()` 282947c6ae99SBarry Smith 283047c6ae99SBarry Smith @*/ 2831d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 2832d71ae5a4SJacob Faibussowitsch { 28337128ae9fSMatthew G Knepley PetscSF sf; 2834ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2835ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2836ca3d3a14SMatthew G. Knepley PetscBool transform; 2837baf369e7SPeter Brune DMGlobalToLocalHookLink link; 2838d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 283947c6ae99SBarry Smith 284047c6ae99SBarry Smith PetscFunctionBegin; 2841171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 28429566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 28439566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 28447128ae9fSMatthew G Knepley if (sf) { 28457a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 28467128ae9fSMatthew G Knepley 28479566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 28489566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 28499566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, gArray, lArray, MPI_REPLACE)); 28509566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 28519566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 28529566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexGlobalToLocalBasis(dm, l)); 28537128ae9fSMatthew G Knepley } else { 28549566063dSJacob Faibussowitsch PetscCall((*dm->ops->globaltolocalend)(dm, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l)); 28557128ae9fSMatthew G Knepley } 28569566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalHook_Constraints(dm, g, mode, l, NULL)); 2857baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 28589566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 2859baf369e7SPeter Brune } 286047c6ae99SBarry Smith PetscFunctionReturn(0); 286147c6ae99SBarry Smith } 286247c6ae99SBarry Smith 2863d4d07f1eSToby Isaac /*@C 2864d4d07f1eSToby Isaac DMLocalToGlobalHookAdd - adds a callback to be run when a local to global is called 2865d4d07f1eSToby Isaac 2866bb7acecfSBarry Smith Logically Collective on dm 2867d4d07f1eSToby Isaac 28684165533cSJose E. Roman Input Parameters: 2869bb7acecfSBarry Smith + dm - the `DM` 2870bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMLocalToGlobalBegin()` 2871bb7acecfSBarry Smith . endhook - function to run after `DMLocalToGlobalEnd()` has completed 2872d4d07f1eSToby Isaac - ctx - [optional] user-defined context for provide data for the hooks (may be NULL) 2873d4d07f1eSToby Isaac 2874d4d07f1eSToby Isaac Calling sequence for beginhook: 2875d4d07f1eSToby Isaac $ beginhook(DM fine,Vec l,InsertMode mode,Vec g,void *ctx) 2876d4d07f1eSToby Isaac 2877bb7acecfSBarry Smith + dm - global `DM` 2878d4d07f1eSToby Isaac . l - local vector 2879d4d07f1eSToby Isaac . mode - mode 2880d4d07f1eSToby Isaac . g - global vector 2881d4d07f1eSToby Isaac - ctx - optional user-defined function context 2882d4d07f1eSToby Isaac 2883d4d07f1eSToby Isaac Calling sequence for endhook: 2884d4d07f1eSToby Isaac $ endhook(DM fine,Vec l,InsertMode mode,Vec g,void *ctx) 2885d4d07f1eSToby Isaac 2886bb7acecfSBarry Smith + global - global `DM` 2887d4d07f1eSToby Isaac . l - local vector 2888d4d07f1eSToby Isaac . mode - mode 2889d4d07f1eSToby Isaac . g - global vector 2890d4d07f1eSToby Isaac - ctx - optional user-defined function context 2891d4d07f1eSToby Isaac 2892d4d07f1eSToby Isaac Level: advanced 2893d4d07f1eSToby Isaac 2894bb7acecfSBarry Smith .seealso: `DMLocalToGlobal()`, `DMRefineHookAdd()`, `DMGlobalToLocalHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2895d4d07f1eSToby Isaac @*/ 2896d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM, Vec, InsertMode, Vec, void *), PetscErrorCode (*endhook)(DM, Vec, InsertMode, Vec, void *), void *ctx) 2897d71ae5a4SJacob Faibussowitsch { 2898d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, *p; 2899d4d07f1eSToby Isaac 2900d4d07f1eSToby Isaac PetscFunctionBegin; 2901d4d07f1eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2902d4d07f1eSToby Isaac for (p = &dm->ltoghook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 29039566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2904d4d07f1eSToby Isaac link->beginhook = beginhook; 2905d4d07f1eSToby Isaac link->endhook = endhook; 2906d4d07f1eSToby Isaac link->ctx = ctx; 2907d4d07f1eSToby Isaac link->next = NULL; 2908d4d07f1eSToby Isaac *p = link; 2909d4d07f1eSToby Isaac PetscFunctionReturn(0); 2910d4d07f1eSToby Isaac } 2911d4d07f1eSToby Isaac 2912d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMLocalToGlobalHook_Constraints(DM dm, Vec l, InsertMode mode, Vec g, void *ctx) 2913d71ae5a4SJacob Faibussowitsch { 29144c274da1SToby Isaac Mat cMat; 29154c274da1SToby Isaac Vec cVec; 29164c274da1SToby Isaac PetscSection section, cSec; 29174c274da1SToby Isaac PetscInt pStart, pEnd, p, dof; 29184c274da1SToby Isaac 29194c274da1SToby Isaac PetscFunctionBegin; 29204c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29219566063dSJacob Faibussowitsch PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, NULL)); 29224c274da1SToby Isaac if (cMat && (mode == ADD_VALUES || mode == ADD_ALL_VALUES || mode == ADD_BC_VALUES)) { 29235db9a05bSToby Isaac PetscInt nRows; 29245db9a05bSToby Isaac 29259566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 29265db9a05bSToby Isaac if (nRows <= 0) PetscFunctionReturn(0); 29279566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 29289566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 29299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 29304c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 29319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 29324c274da1SToby Isaac if (dof) { 29334c274da1SToby Isaac PetscInt d; 29344c274da1SToby Isaac PetscScalar *vals; 29359566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(l, section, p, &vals)); 29369566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(cVec, cSec, p, vals, mode)); 29374c274da1SToby Isaac /* for this to be the true transpose, we have to zero the values that 29384c274da1SToby Isaac * we just extracted */ 2939ad540459SPierre Jolivet for (d = 0; d < dof; d++) vals[d] = 0.; 29404c274da1SToby Isaac } 29414c274da1SToby Isaac } 29429566063dSJacob Faibussowitsch PetscCall(MatMultTransposeAdd(cMat, cVec, l, l)); 29439566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 29444c274da1SToby Isaac } 29454c274da1SToby Isaac PetscFunctionReturn(0); 29464c274da1SToby Isaac } 294701729b5cSPatrick Sanan /*@ 294801729b5cSPatrick Sanan DMLocalToGlobal - updates global vectors from local vectors 294901729b5cSPatrick Sanan 2950d083f849SBarry Smith Neighbor-wise Collective on dm 295101729b5cSPatrick Sanan 295201729b5cSPatrick Sanan Input Parameters: 2953bb7acecfSBarry Smith + dm - the `DM` object 295401729b5cSPatrick Sanan . l - the local vector 2955bb7acecfSBarry Smith . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 295601729b5cSPatrick Sanan - g - the global vector 295701729b5cSPatrick Sanan 295801729b5cSPatrick Sanan Notes: 295901729b5cSPatrick Sanan The communication involved in this update can be overlapped with computation by using 2960bb7acecfSBarry Smith `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()`. 296101729b5cSPatrick Sanan 2962bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 2963bb7acecfSBarry Smith 2964bb7acecfSBarry Smith `INSERT_VALUES` is not supported for `DMDA`; in that case simply compute the values directly into a global vector instead of a local one. 2965bb7acecfSBarry Smith 2966bb7acecfSBarry Smith Use `DMLocalToGlobalHookAdd()` to add additional operations that are performed on the data during the update process 296701729b5cSPatrick Sanan 296801729b5cSPatrick Sanan Level: beginner 296901729b5cSPatrick Sanan 2970bb7acecfSBarry Smith .seealso: `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`, `DMLocalToGlobalHookAdd()`, `DMGlobaToLocallHookAdd()` 297101729b5cSPatrick Sanan 297201729b5cSPatrick Sanan @*/ 2973d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobal(DM dm, Vec l, InsertMode mode, Vec g) 2974d71ae5a4SJacob Faibussowitsch { 297501729b5cSPatrick Sanan PetscFunctionBegin; 29769566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, l, mode, g)); 29779566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, l, mode, g)); 297801729b5cSPatrick Sanan PetscFunctionReturn(0); 297901729b5cSPatrick Sanan } 29804c274da1SToby Isaac 298147c6ae99SBarry Smith /*@ 298201729b5cSPatrick Sanan DMLocalToGlobalBegin - begins updating global vectors from local vectors 29839a42bb27SBarry Smith 2984d083f849SBarry Smith Neighbor-wise Collective on dm 29859a42bb27SBarry Smith 29869a42bb27SBarry Smith Input Parameters: 2987bb7acecfSBarry Smith + dm - the `DM` object 2988f6813fd5SJed Brown . l - the local vector 2989bb7acecfSBarry Smith . mode - `if INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 29901eb28f2eSBarry Smith - g - the global vector 29919a42bb27SBarry Smith 299295452b02SPatrick Sanan Notes: 2993bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 2994bb7acecfSBarry Smith 2995bb7acecfSBarry Smith `INSERT_VALUES is` not supported for `DMDA`, in that case simply compute the values directly into a global vector instead of a local one. 2996bb7acecfSBarry Smith 2997bb7acecfSBarry Smith Use `DMLocalToGlobalEnd()` to complete the communication process. 2998bb7acecfSBarry Smith 2999bb7acecfSBarry Smith `DMLocalToGlobal()` is a short form of `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()` 3000bb7acecfSBarry Smith 3001bb7acecfSBarry Smith `DMLocalToGlobalHookAdd()` may be used to provide additional operations that are performed during the update process. 30029a42bb27SBarry Smith 300301729b5cSPatrick Sanan Level: intermediate 30049a42bb27SBarry Smith 3005bb7acecfSBarry Smith .seealso: `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()` 30069a42bb27SBarry Smith 30079a42bb27SBarry Smith @*/ 3008d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalBegin(DM dm, Vec l, InsertMode mode, Vec g) 3009d71ae5a4SJacob Faibussowitsch { 30107128ae9fSMatthew G Knepley PetscSF sf; 301184330215SMatthew G. Knepley PetscSection s, gs; 3012d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3013ca3d3a14SMatthew G. Knepley Vec tmpl; 3014ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3015ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3016fa88e482SJed Brown PetscBool isInsert, transform, l_inplace = PETSC_FALSE, g_inplace = PETSC_FALSE; 3017d0295fc0SJunchao Zhang PetscMemType lmtype = PETSC_MEMTYPE_HOST, gmtype = PETSC_MEMTYPE_HOST; 30189a42bb27SBarry Smith 30199a42bb27SBarry Smith PetscFunctionBegin; 3020171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3021d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 30221baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, l, mode, g, link->ctx)); 3023d4d07f1eSToby Isaac } 30249566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalHook_Constraints(dm, l, mode, g, NULL)); 30259566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 30269566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 30277128ae9fSMatthew G Knepley switch (mode) { 30287128ae9fSMatthew G Knepley case INSERT_VALUES: 30297128ae9fSMatthew G Knepley case INSERT_ALL_VALUES: 3030d71ae5a4SJacob Faibussowitsch case INSERT_BC_VALUES: 3031d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3032d71ae5a4SJacob Faibussowitsch break; 30337128ae9fSMatthew G Knepley case ADD_VALUES: 30347128ae9fSMatthew G Knepley case ADD_ALL_VALUES: 3035d71ae5a4SJacob Faibussowitsch case ADD_BC_VALUES: 3036d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3037d71ae5a4SJacob Faibussowitsch break; 3038d71ae5a4SJacob Faibussowitsch default: 3039d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 30407128ae9fSMatthew G Knepley } 3041ca3d3a14SMatthew G. Knepley if ((sf && !isInsert) || (s && isInsert)) { 30429566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3043ca3d3a14SMatthew G. Knepley if (transform) { 30449566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 30459566063dSJacob Faibussowitsch PetscCall(VecCopy(l, tmpl)); 30469566063dSJacob Faibussowitsch PetscCall(DMPlexLocalToGlobalBasis(dm, tmpl)); 30479566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3048fa88e482SJed Brown } else if (isInsert) { 30499566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l, &lArray)); 3050fa88e482SJed Brown } else { 30519566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, &lmtype)); 3052fa88e482SJed Brown l_inplace = PETSC_TRUE; 3053ca3d3a14SMatthew G. Knepley } 3054fa88e482SJed Brown if (s && isInsert) { 30559566063dSJacob Faibussowitsch PetscCall(VecGetArray(g, &gArray)); 3056fa88e482SJed Brown } else { 30579566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, &gmtype)); 3058fa88e482SJed Brown g_inplace = PETSC_TRUE; 3059fa88e482SJed Brown } 3060ca3d3a14SMatthew G. Knepley if (sf && !isInsert) { 30619566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(sf, MPIU_SCALAR, lmtype, lArray, gmtype, gArray, MPIU_SUM)); 306284330215SMatthew G. Knepley } else if (s && isInsert) { 306384330215SMatthew G. Knepley PetscInt gStart, pStart, pEnd, p; 306484330215SMatthew G. Knepley 30659566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gs)); 30669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 30679566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(g, &gStart, NULL)); 306884330215SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 3069b3b16f48SMatthew G. Knepley PetscInt dof, gdof, cdof, gcdof, off, goff, d, e; 307084330215SMatthew G. Knepley 30719566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s, p, &dof)); 30729566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(gs, p, &gdof)); 30739566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s, p, &cdof)); 30749566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(gs, p, &gcdof)); 30759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(s, p, &off)); 30769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(gs, p, &goff)); 3077b3b16f48SMatthew G. Knepley /* Ignore off-process data and points with no global data */ 307803442857SMatthew G. Knepley if (!gdof || goff < 0) continue; 30797a8be351SBarry Smith PetscCheck(dof == gdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 3080b3b16f48SMatthew G. Knepley /* If no constraints are enforced in the global vector */ 3081b3b16f48SMatthew G. Knepley if (!gcdof) { 308284330215SMatthew G. Knepley for (d = 0; d < dof; ++d) gArray[goff - gStart + d] = lArray[off + d]; 3083b3b16f48SMatthew G. Knepley /* If constraints are enforced in the global vector */ 3084b3b16f48SMatthew G. Knepley } else if (cdof == gcdof) { 308584330215SMatthew G. Knepley const PetscInt *cdofs; 308684330215SMatthew G. Knepley PetscInt cind = 0; 308784330215SMatthew G. Knepley 30889566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(s, p, &cdofs)); 3089b3b16f48SMatthew G. Knepley for (d = 0, e = 0; d < dof; ++d) { 30909371c9d4SSatish Balay if ((cind < cdof) && (d == cdofs[cind])) { 30919371c9d4SSatish Balay ++cind; 30929371c9d4SSatish Balay continue; 30939371c9d4SSatish Balay } 3094b3b16f48SMatthew G. Knepley gArray[goff - gStart + e++] = lArray[off + d]; 309584330215SMatthew G. Knepley } 30967a8be351SBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 309784330215SMatthew G. Knepley } 3098ca3d3a14SMatthew G. Knepley } 3099fa88e482SJed Brown if (g_inplace) { 31009566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 3101fa88e482SJed Brown } else { 31029566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(g, &gArray)); 3103fa88e482SJed Brown } 3104ca3d3a14SMatthew G. Knepley if (transform) { 31059566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 31069566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3107fa88e482SJed Brown } else if (l_inplace) { 31089566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3109ca3d3a14SMatthew G. Knepley } else { 31109566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l, &lArray)); 3111ca3d3a14SMatthew G. Knepley } 31127128ae9fSMatthew G Knepley } else { 31139566063dSJacob Faibussowitsch PetscCall((*dm->ops->localtoglobalbegin)(dm, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g)); 31147128ae9fSMatthew G Knepley } 31159a42bb27SBarry Smith PetscFunctionReturn(0); 31169a42bb27SBarry Smith } 31179a42bb27SBarry Smith 31189a42bb27SBarry Smith /*@ 31199a42bb27SBarry Smith DMLocalToGlobalEnd - updates global vectors from local vectors 312047c6ae99SBarry Smith 3121d083f849SBarry Smith Neighbor-wise Collective on dm 312247c6ae99SBarry Smith 312347c6ae99SBarry Smith Input Parameters: 3124bb7acecfSBarry Smith + dm - the `DM` object 3125f6813fd5SJed Brown . l - the local vector 3126bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 3127f6813fd5SJed Brown - g - the global vector 312847c6ae99SBarry Smith 312901729b5cSPatrick Sanan Level: intermediate 313047c6ae99SBarry Smith 3131bb7acecfSBarry Smith Note: 3132bb7acecfSBarry Smith See `DMLocalToGlobalBegin()` for full details 3133bb7acecfSBarry Smith 3134bb7acecfSBarry Smith .seealso: `DMLocalToGlobalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalEnd()` 313547c6ae99SBarry Smith 313647c6ae99SBarry Smith @*/ 3137d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalEnd(DM dm, Vec l, InsertMode mode, Vec g) 3138d71ae5a4SJacob Faibussowitsch { 31397128ae9fSMatthew G Knepley PetscSF sf; 314084330215SMatthew G. Knepley PetscSection s; 3141d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3142ca3d3a14SMatthew G. Knepley PetscBool isInsert, transform; 314347c6ae99SBarry Smith 314447c6ae99SBarry Smith PetscFunctionBegin; 3145171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 31469566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 31479566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 31487128ae9fSMatthew G Knepley switch (mode) { 31497128ae9fSMatthew G Knepley case INSERT_VALUES: 3150d71ae5a4SJacob Faibussowitsch case INSERT_ALL_VALUES: 3151d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3152d71ae5a4SJacob Faibussowitsch break; 31537128ae9fSMatthew G Knepley case ADD_VALUES: 3154d71ae5a4SJacob Faibussowitsch case ADD_ALL_VALUES: 3155d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3156d71ae5a4SJacob Faibussowitsch break; 3157d71ae5a4SJacob Faibussowitsch default: 3158d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 31597128ae9fSMatthew G Knepley } 316084330215SMatthew G. Knepley if (sf && !isInsert) { 3161ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3162ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3163ca3d3a14SMatthew G. Knepley Vec tmpl; 316484330215SMatthew G. Knepley 31659566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3166ca3d3a14SMatthew G. Knepley if (transform) { 31679566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 31689566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3169ca3d3a14SMatthew G. Knepley } else { 31709566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, NULL)); 3171ca3d3a14SMatthew G. Knepley } 31729566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, NULL)); 31739566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_SCALAR, lArray, gArray, MPIU_SUM)); 3174ca3d3a14SMatthew G. Knepley if (transform) { 31759566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 31769566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3177ca3d3a14SMatthew G. Knepley } else { 31789566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3179ca3d3a14SMatthew G. Knepley } 31809566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 318184330215SMatthew G. Knepley } else if (s && isInsert) { 31827128ae9fSMatthew G Knepley } else { 31839566063dSJacob Faibussowitsch PetscCall((*dm->ops->localtoglobalend)(dm, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g)); 31847128ae9fSMatthew G Knepley } 3185d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 31869566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 3187d4d07f1eSToby Isaac } 318847c6ae99SBarry Smith PetscFunctionReturn(0); 318947c6ae99SBarry Smith } 319047c6ae99SBarry Smith 3191f089877aSRichard Tran Mills /*@ 3192bb7acecfSBarry Smith DMLocalToLocalBegin - Begins the process of mapping values from a local vector (that include ghost points 3193bc0a1609SRichard Tran Mills that contain irrelevant values) to another local vector where the ghost 3194bb7acecfSBarry Smith points in the second are set correctly from values on other MPI ranks. Must be followed by `DMLocalToLocalEnd()`. 3195f089877aSRichard Tran Mills 3196d083f849SBarry Smith Neighbor-wise Collective on dm 3197f089877aSRichard Tran Mills 3198f089877aSRichard Tran Mills Input Parameters: 3199bb7acecfSBarry Smith + dm - the `DM` object 3200bc0a1609SRichard Tran Mills . g - the original local vector 3201bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3202f089877aSRichard Tran Mills 3203bc0a1609SRichard Tran Mills Output Parameter: 3204bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3205f089877aSRichard Tran Mills 3206f089877aSRichard Tran Mills Level: intermediate 3207f089877aSRichard Tran Mills 3208bb7acecfSBarry Smith .seealso: `DMLocalToLocalEnd(), `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMLocalToLocalEnd()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3209f089877aSRichard Tran Mills 3210f089877aSRichard Tran Mills @*/ 3211d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 3212d71ae5a4SJacob Faibussowitsch { 3213f089877aSRichard Tran Mills PetscFunctionBegin; 3214f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32159f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 32169f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 32179f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 3218f089877aSRichard Tran Mills PetscFunctionReturn(0); 3219f089877aSRichard Tran Mills } 3220f089877aSRichard Tran Mills 3221f089877aSRichard Tran Mills /*@ 3222bb7acecfSBarry Smith DMLocalToLocalEnd - Maps from a local vector to another local vector where the ghost 3223bb7acecfSBarry Smith points in the second are set correctly. Must be preceded by `DMLocalToLocalBegin()`. 3224f089877aSRichard Tran Mills 3225d083f849SBarry Smith Neighbor-wise Collective on dm 3226f089877aSRichard Tran Mills 3227f089877aSRichard Tran Mills Input Parameters: 3228bb7acecfSBarry Smith + da - the `DM` object 3229bc0a1609SRichard Tran Mills . g - the original local vector 3230bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3231f089877aSRichard Tran Mills 3232bc0a1609SRichard Tran Mills Output Parameter: 3233bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3234f089877aSRichard Tran Mills 3235f089877aSRichard Tran Mills Level: intermediate 3236f089877aSRichard Tran Mills 3237bb7acecfSBarry Smith .seealso: `DMLocalToLocalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMLocalToLocalBegin()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3238f089877aSRichard Tran Mills 3239f089877aSRichard Tran Mills @*/ 3240d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 3241d71ae5a4SJacob Faibussowitsch { 3242f089877aSRichard Tran Mills PetscFunctionBegin; 3243f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32449f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 32459f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 32469f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 3247f089877aSRichard Tran Mills PetscFunctionReturn(0); 3248f089877aSRichard Tran Mills } 3249f089877aSRichard Tran Mills 325047c6ae99SBarry Smith /*@ 3251bb7acecfSBarry Smith DMCoarsen - Coarsens a `DM` object using a standard, non-adaptive coarsening of the underlying mesh 325247c6ae99SBarry Smith 3253d083f849SBarry Smith Collective on dm 325447c6ae99SBarry Smith 3255d8d19677SJose E. Roman Input Parameters: 3256bb7acecfSBarry Smith + dm - the `DM` object 3257bb7acecfSBarry Smith - comm - the communicator to contain the new `DM` object (or MPI_COMM_NULL) 325847c6ae99SBarry Smith 325947c6ae99SBarry Smith Output Parameter: 3260bb7acecfSBarry Smith . dmc - the coarsened `DM` 326147c6ae99SBarry Smith 326247c6ae99SBarry Smith Level: developer 326347c6ae99SBarry Smith 3264bb7acecfSBarry Smith .seealso: `DM`, `DMRefine()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 326547c6ae99SBarry Smith 326647c6ae99SBarry Smith @*/ 3267d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsen(DM dm, MPI_Comm comm, DM *dmc) 3268d71ae5a4SJacob Faibussowitsch { 3269b17ce1afSJed Brown DMCoarsenHookLink link; 327047c6ae99SBarry Smith 327147c6ae99SBarry Smith PetscFunctionBegin; 3272171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32739566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Coarsen, dm, 0, 0, 0)); 3274dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, coarsen, comm, dmc); 3275b9d85ea2SLisandro Dalcin if (*dmc) { 3276a3574896SRichard Tran Mills (*dmc)->bind_below = dm->bind_below; /* Propagate this from parent DM; otherwise -dm_bind_below will be useless for multigrid cases. */ 32779566063dSJacob Faibussowitsch PetscCall(DMSetCoarseDM(dm, *dmc)); 327843842a1eSJed Brown (*dmc)->ops->creatematrix = dm->ops->creatematrix; 32799566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmc)); 3280644e2e5bSBarry Smith (*dmc)->ctx = dm->ctx; 32810598a293SJed Brown (*dmc)->levelup = dm->levelup; 3282656b349aSBarry Smith (*dmc)->leveldown = dm->leveldown + 1; 32839566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmc, dm->mattype)); 3284b17ce1afSJed Brown for (link = dm->coarsenhook; link; link = link->next) { 32859566063dSJacob Faibussowitsch if (link->coarsenhook) PetscCall((*link->coarsenhook)(dm, *dmc, link->ctx)); 3286b17ce1afSJed Brown } 3287b9d85ea2SLisandro Dalcin } 32889566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Coarsen, dm, 0, 0, 0)); 32897a8be351SBarry Smith PetscCheck(*dmc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "NULL coarse mesh produced"); 3290b17ce1afSJed Brown PetscFunctionReturn(0); 3291b17ce1afSJed Brown } 3292b17ce1afSJed Brown 3293bb9467b5SJed Brown /*@C 3294b17ce1afSJed Brown DMCoarsenHookAdd - adds a callback to be run when restricting a nonlinear problem to the coarse grid 3295b17ce1afSJed Brown 3296bb7acecfSBarry Smith Logically Collective on fine 3297b17ce1afSJed Brown 32984165533cSJose E. Roman Input Parameters: 3299bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3300b17ce1afSJed Brown . coarsenhook - function to run when setting up a coarser level 3301bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels (called once per `SNESSolve()`) 33020298fd71SBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be NULL) 3303b17ce1afSJed Brown 3304b17ce1afSJed Brown Calling sequence of coarsenhook: 3305b17ce1afSJed Brown $ coarsenhook(DM fine,DM coarse,void *ctx); 3306b17ce1afSJed Brown 3307bb7acecfSBarry Smith + fine - fine level `DM` 3308bb7acecfSBarry Smith . coarse - coarse level `DM` to restrict problem to 3309b17ce1afSJed Brown - ctx - optional user-defined function context 3310b17ce1afSJed Brown 3311b17ce1afSJed Brown Calling sequence for restricthook: 3312c833c3b5SJed Brown $ restricthook(DM fine,Mat mrestrict,Vec rscale,Mat inject,DM coarse,void *ctx) 3313bb7acecfSBarry Smith $ 3314bb7acecfSBarry Smith + fine - fine level `DM` 3315bb7acecfSBarry Smith . mrestrict - matrix restricting a fine-level solution to the coarse grid, usually the transpose of the interpolation 3316c833c3b5SJed Brown . rscale - scaling vector for restriction 3317c833c3b5SJed Brown . inject - matrix restricting by injection 3318b17ce1afSJed Brown . coarse - coarse level DM to update 3319b17ce1afSJed Brown - ctx - optional user-defined function context 3320b17ce1afSJed Brown 3321b17ce1afSJed Brown Level: advanced 3322b17ce1afSJed Brown 3323b17ce1afSJed Brown Notes: 3324bb7acecfSBarry Smith This function is only needed if auxiliary data, attached to the `DM` with `PetscObjectCompose()`, needs to be set up or passed from the fine `DM` to the coarse `DM`. 3325b17ce1afSJed Brown 3326b17ce1afSJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 3327b17ce1afSJed Brown 3328b17ce1afSJed Brown In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3329bb7acecfSBarry Smith extract the finest level information from its context (instead of from the `SNES`). 3330b17ce1afSJed Brown 3331bb7acecfSBarry Smith The hooks are automatically called by `DMRestrict()` 3332bb7acecfSBarry Smith 3333bb7acecfSBarry Smith Fortran Note: 3334bb7acecfSBarry Smith This function is not available from Fortran. 3335bb9467b5SJed Brown 3336db781477SPatrick Sanan .seealso: `DMCoarsenHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3337b17ce1afSJed Brown @*/ 3338d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookAdd(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx) 3339d71ae5a4SJacob Faibussowitsch { 3340b17ce1afSJed Brown DMCoarsenHookLink link, *p; 3341b17ce1afSJed Brown 3342b17ce1afSJed Brown PetscFunctionBegin; 3343b17ce1afSJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 33441e3d8eccSJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 33451e3d8eccSJed Brown if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(0); 33461e3d8eccSJed Brown } 33479566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 3348b17ce1afSJed Brown link->coarsenhook = coarsenhook; 3349b17ce1afSJed Brown link->restricthook = restricthook; 3350b17ce1afSJed Brown link->ctx = ctx; 33510298fd71SBarry Smith link->next = NULL; 3352b17ce1afSJed Brown *p = link; 3353b17ce1afSJed Brown PetscFunctionReturn(0); 3354b17ce1afSJed Brown } 3355b17ce1afSJed Brown 3356dc822a44SJed Brown /*@C 3357bb7acecfSBarry Smith DMCoarsenHookRemove - remove a callback set with `DMCoarsenHookAdd()` 3358dc822a44SJed Brown 3359bb7acecfSBarry Smith Logically Collective on fine 3360dc822a44SJed Brown 33614165533cSJose E. Roman Input Parameters: 3362bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3363dc822a44SJed Brown . coarsenhook - function to run when setting up a coarser level 3364bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels 3365dc822a44SJed Brown - ctx - [optional] user-defined context for provide data for the hooks (may be NULL) 3366dc822a44SJed Brown 3367dc822a44SJed Brown Level: advanced 3368dc822a44SJed Brown 3369bb7acecfSBarry Smith Note: 3370dc822a44SJed Brown This function does nothing if the hook is not in the list. 3371dc822a44SJed Brown 3372bb7acecfSBarry Smith Fortran Note: 3373bb7acecfSBarry Smith This function is not available from Fortran. 3374dc822a44SJed Brown 3375db781477SPatrick Sanan .seealso: `DMCoarsenHookAdd()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3376dc822a44SJed Brown @*/ 3377d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookRemove(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx) 3378d71ae5a4SJacob Faibussowitsch { 3379dc822a44SJed Brown DMCoarsenHookLink link, *p; 3380dc822a44SJed Brown 3381dc822a44SJed Brown PetscFunctionBegin; 3382dc822a44SJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 3383dc822a44SJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3384dc822a44SJed Brown if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3385dc822a44SJed Brown link = *p; 3386dc822a44SJed Brown *p = link->next; 33879566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3388dc822a44SJed Brown break; 3389dc822a44SJed Brown } 3390dc822a44SJed Brown } 3391dc822a44SJed Brown PetscFunctionReturn(0); 3392dc822a44SJed Brown } 3393dc822a44SJed Brown 3394b17ce1afSJed Brown /*@ 3395bb7acecfSBarry Smith DMRestrict - restricts user-defined problem data to a coarser `DM` by running hooks registered by `DMCoarsenHookAdd()` 3396b17ce1afSJed Brown 3397b17ce1afSJed Brown Collective if any hooks are 3398b17ce1afSJed Brown 33994165533cSJose E. Roman Input Parameters: 3400bb7acecfSBarry Smith + fine - finer `DM` from which the data is obtained 3401bb7acecfSBarry Smith . restrct - restriction matrix, apply using `MatRestrict()`, usually the transpose of the interpolation 3402e91eccc2SStefano Zampini . rscale - scaling vector for restriction 3403bb7acecfSBarry Smith . inject - injection matrix, also use `MatRestrict()` 3404e91eccc2SStefano Zampini - coarse - coarser DM to update 3405b17ce1afSJed Brown 3406b17ce1afSJed Brown Level: developer 3407b17ce1afSJed Brown 3408bb7acecfSBarry Smith Developer Note: 3409bb7acecfSBarry Smith Though this routine is called `DMRestrict()` the hooks are added with `DMCoarsenHookAdd()`, a consistent terminology would be better 3410bb7acecfSBarry Smith 3411bb7acecfSBarry Smith .seealso: `DMCoarsenHookAdd()`, `MatRestrict()`, `DMInterpolate()`, `DMRefineHookAdd()` 3412b17ce1afSJed Brown @*/ 3413d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestrict(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse) 3414d71ae5a4SJacob Faibussowitsch { 3415b17ce1afSJed Brown DMCoarsenHookLink link; 3416b17ce1afSJed Brown 3417b17ce1afSJed Brown PetscFunctionBegin; 3418b17ce1afSJed Brown for (link = fine->coarsenhook; link; link = link->next) { 34191baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(fine, restrct, rscale, inject, coarse, link->ctx)); 3420b17ce1afSJed Brown } 342147c6ae99SBarry Smith PetscFunctionReturn(0); 342247c6ae99SBarry Smith } 342347c6ae99SBarry Smith 3424bb9467b5SJed Brown /*@C 3425be081cd6SPeter Brune DMSubDomainHookAdd - adds a callback to be run when restricting a problem to the coarse grid 34265dbd56e3SPeter Brune 3427d083f849SBarry Smith Logically Collective on global 34285dbd56e3SPeter Brune 34294165533cSJose E. Roman Input Parameters: 3430bb7acecfSBarry Smith + global - global `DM` 3431bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 34325dbd56e3SPeter Brune . restricthook - function to run to update data on block solve (at the beginning of the block solve) 34330298fd71SBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be NULL) 34345dbd56e3SPeter Brune 3435ec4806b8SPeter Brune Calling sequence for ddhook: 3436ec4806b8SPeter Brune $ ddhook(DM global,DM block,void *ctx) 3437ec4806b8SPeter Brune 3438bb7acecfSBarry Smith + global - global `DM` 3439bb7acecfSBarry Smith . block - block `DM` 3440ec4806b8SPeter Brune - ctx - optional user-defined function context 3441ec4806b8SPeter Brune 34425dbd56e3SPeter Brune Calling sequence for restricthook: 3443ec4806b8SPeter Brune $ restricthook(DM global,VecScatter out,VecScatter in,DM block,void *ctx) 34445dbd56e3SPeter Brune 3445bb7acecfSBarry Smith + global - global `DM` 34465dbd56e3SPeter Brune . out - scatter to the outer (with ghost and overlap points) block vector 34475dbd56e3SPeter Brune . in - scatter to block vector values only owned locally 3448bb7acecfSBarry Smith . block - block `DM` 34495dbd56e3SPeter Brune - ctx - optional user-defined function context 34505dbd56e3SPeter Brune 34515dbd56e3SPeter Brune Level: advanced 34525dbd56e3SPeter Brune 34535dbd56e3SPeter Brune Notes: 3454bb7acecfSBarry Smith This function is only needed if auxiliary data needs to be set up on subdomain `DM`s. 34555dbd56e3SPeter Brune 34565dbd56e3SPeter Brune If this function is called multiple times, the hooks will be run in the order they are added. 34575dbd56e3SPeter Brune 34585dbd56e3SPeter Brune In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3459bb7acecfSBarry Smith extract the global information from its context (instead of from the `SNES`). 34605dbd56e3SPeter Brune 3461bb7acecfSBarry Smith Fortran Note: 3462bb7acecfSBarry Smith This function is not available from Fortran. 3463bb9467b5SJed Brown 3464bb7acecfSBarry Smith .seealso: `DMSubDomainHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 34655dbd56e3SPeter Brune @*/ 3466d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookAdd(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx) 3467d71ae5a4SJacob Faibussowitsch { 3468be081cd6SPeter Brune DMSubDomainHookLink link, *p; 34695dbd56e3SPeter Brune 34705dbd56e3SPeter Brune PetscFunctionBegin; 34715dbd56e3SPeter Brune PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3472b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 3473b3a6b972SJed Brown if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(0); 3474b3a6b972SJed Brown } 34759566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 34765dbd56e3SPeter Brune link->restricthook = restricthook; 3477be081cd6SPeter Brune link->ddhook = ddhook; 34785dbd56e3SPeter Brune link->ctx = ctx; 34790298fd71SBarry Smith link->next = NULL; 34805dbd56e3SPeter Brune *p = link; 34815dbd56e3SPeter Brune PetscFunctionReturn(0); 34825dbd56e3SPeter Brune } 34835dbd56e3SPeter Brune 3484b3a6b972SJed Brown /*@C 3485b3a6b972SJed Brown DMSubDomainHookRemove - remove a callback from the list to be run when restricting a problem to the coarse grid 3486b3a6b972SJed Brown 3487bb7acecfSBarry Smith Logically Collective on global 3488b3a6b972SJed Brown 34894165533cSJose E. Roman Input Parameters: 3490bb7acecfSBarry Smith + global - global `DM` 3491bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 3492b3a6b972SJed Brown . restricthook - function to run to update data on block solve (at the beginning of the block solve) 3493b3a6b972SJed Brown - ctx - [optional] user-defined context for provide data for the hooks (may be NULL) 3494b3a6b972SJed Brown 3495b3a6b972SJed Brown Level: advanced 3496b3a6b972SJed Brown 3497bb7acecfSBarry Smith Fortran Note: 3498bb7acecfSBarry Smith This function is not available from Fortran. 3499b3a6b972SJed Brown 3500db781477SPatrick Sanan .seealso: `DMSubDomainHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3501b3a6b972SJed Brown @*/ 3502d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookRemove(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx) 3503d71ae5a4SJacob Faibussowitsch { 3504b3a6b972SJed Brown DMSubDomainHookLink link, *p; 3505b3a6b972SJed Brown 3506b3a6b972SJed Brown PetscFunctionBegin; 3507b3a6b972SJed Brown PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3508b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3509b3a6b972SJed Brown if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3510b3a6b972SJed Brown link = *p; 3511b3a6b972SJed Brown *p = link->next; 35129566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3513b3a6b972SJed Brown break; 3514b3a6b972SJed Brown } 3515b3a6b972SJed Brown } 3516b3a6b972SJed Brown PetscFunctionReturn(0); 3517b3a6b972SJed Brown } 3518b3a6b972SJed Brown 35195dbd56e3SPeter Brune /*@ 3520bb7acecfSBarry Smith DMSubDomainRestrict - restricts user-defined problem data to a block `DM` by running hooks registered by `DMSubDomainHookAdd()` 35215dbd56e3SPeter Brune 35225dbd56e3SPeter Brune Collective if any hooks are 35235dbd56e3SPeter Brune 35244165533cSJose E. Roman Input Parameters: 3525bb7acecfSBarry Smith + fine - finer `DM` to use as a base 3526be081cd6SPeter Brune . oscatter - scatter from domain global vector filling subdomain global vector with overlap 3527be081cd6SPeter Brune . gscatter - scatter from domain global vector filling subdomain local vector with ghosts 3528bb7acecfSBarry Smith - coarse - coarser `DM` to update 35295dbd56e3SPeter Brune 35305dbd56e3SPeter Brune Level: developer 35315dbd56e3SPeter Brune 3532db781477SPatrick Sanan .seealso: `DMCoarsenHookAdd()`, `MatRestrict()` 35335dbd56e3SPeter Brune @*/ 3534d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainRestrict(DM global, VecScatter oscatter, VecScatter gscatter, DM subdm) 3535d71ae5a4SJacob Faibussowitsch { 3536be081cd6SPeter Brune DMSubDomainHookLink link; 35375dbd56e3SPeter Brune 35385dbd56e3SPeter Brune PetscFunctionBegin; 3539be081cd6SPeter Brune for (link = global->subdomainhook; link; link = link->next) { 35401baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(global, oscatter, gscatter, subdm, link->ctx)); 35415dbd56e3SPeter Brune } 35425dbd56e3SPeter Brune PetscFunctionReturn(0); 35435dbd56e3SPeter Brune } 35445dbd56e3SPeter Brune 35455fe1f584SPeter Brune /*@ 3546bb7acecfSBarry Smith DMGetCoarsenLevel - Gets the number of coarsenings that have generated this `DM`. 35475fe1f584SPeter Brune 35485fe1f584SPeter Brune Not Collective 35495fe1f584SPeter Brune 35505fe1f584SPeter Brune Input Parameter: 3551bb7acecfSBarry Smith . dm - the `DM` object 35525fe1f584SPeter Brune 35535fe1f584SPeter Brune Output Parameter: 35546a7d9d85SPeter Brune . level - number of coarsenings 35555fe1f584SPeter Brune 35565fe1f584SPeter Brune Level: developer 35575fe1f584SPeter Brune 3558bb7acecfSBarry Smith .seealso: `DMCoarsen()`, `DMSetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 35595fe1f584SPeter Brune 35605fe1f584SPeter Brune @*/ 3561d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarsenLevel(DM dm, PetscInt *level) 3562d71ae5a4SJacob Faibussowitsch { 35635fe1f584SPeter Brune PetscFunctionBegin; 35645fe1f584SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3565b9d85ea2SLisandro Dalcin PetscValidIntPointer(level, 2); 35665fe1f584SPeter Brune *level = dm->leveldown; 35675fe1f584SPeter Brune PetscFunctionReturn(0); 35685fe1f584SPeter Brune } 35695fe1f584SPeter Brune 35709a64c4a8SMatthew G. Knepley /*@ 3571bb7acecfSBarry Smith DMSetCoarsenLevel - Sets the number of coarsenings that have generated this `DM`. 35729a64c4a8SMatthew G. Knepley 3573bb7acecfSBarry Smith Collective on dm 35749a64c4a8SMatthew G. Knepley 35759a64c4a8SMatthew G. Knepley Input Parameters: 3576bb7acecfSBarry Smith + dm - the `DM` object 35779a64c4a8SMatthew G. Knepley - level - number of coarsenings 35789a64c4a8SMatthew G. Knepley 35799a64c4a8SMatthew G. Knepley Level: developer 35809a64c4a8SMatthew G. Knepley 3581bb7acecfSBarry Smith Note: 3582bb7acecfSBarry Smith This is rarely used directly, the information is automatically set when a `DM` is created with `DMCoarsen()` 3583bb7acecfSBarry Smith 3584bb7acecfSBarry Smith .seealso: `DMSetCoarsenLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 35859a64c4a8SMatthew G. Knepley @*/ 3586d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarsenLevel(DM dm, PetscInt level) 3587d71ae5a4SJacob Faibussowitsch { 35889a64c4a8SMatthew G. Knepley PetscFunctionBegin; 35899a64c4a8SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 35909a64c4a8SMatthew G. Knepley dm->leveldown = level; 35919a64c4a8SMatthew G. Knepley PetscFunctionReturn(0); 35929a64c4a8SMatthew G. Knepley } 35939a64c4a8SMatthew G. Knepley 359447c6ae99SBarry Smith /*@C 3595bb7acecfSBarry Smith DMRefineHierarchy - Refines a `DM` object, all levels at once 359647c6ae99SBarry Smith 3597d083f849SBarry Smith Collective on dm 359847c6ae99SBarry Smith 3599d8d19677SJose E. Roman Input Parameters: 3600bb7acecfSBarry Smith + dm - the `DM` object 360147c6ae99SBarry Smith - nlevels - the number of levels of refinement 360247c6ae99SBarry Smith 360347c6ae99SBarry Smith Output Parameter: 3604bb7acecfSBarry Smith . dmf - the refined `DM` hierarchy 360547c6ae99SBarry Smith 360647c6ae99SBarry Smith Level: developer 360747c6ae99SBarry Smith 3608bb7acecfSBarry Smith .seealso: `DMCoarsen()`, `DMCoarsenHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 360947c6ae99SBarry Smith 361047c6ae99SBarry Smith @*/ 3611d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHierarchy(DM dm, PetscInt nlevels, DM dmf[]) 3612d71ae5a4SJacob Faibussowitsch { 361347c6ae99SBarry Smith PetscFunctionBegin; 3614171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36157a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 361647c6ae99SBarry Smith if (nlevels == 0) PetscFunctionReturn(0); 3617b9d85ea2SLisandro Dalcin PetscValidPointer(dmf, 3); 361847c6ae99SBarry Smith if (dm->ops->refinehierarchy) { 3619dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, refinehierarchy, nlevels, dmf); 362047c6ae99SBarry Smith } else if (dm->ops->refine) { 362147c6ae99SBarry Smith PetscInt i; 362247c6ae99SBarry Smith 36239566063dSJacob Faibussowitsch PetscCall(DMRefine(dm, PetscObjectComm((PetscObject)dm), &dmf[0])); 362448a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMRefine(dmf[i - 1], PetscObjectComm((PetscObject)dm), &dmf[i])); 3625ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No RefineHierarchy for this DM yet"); 362647c6ae99SBarry Smith PetscFunctionReturn(0); 362747c6ae99SBarry Smith } 362847c6ae99SBarry Smith 362947c6ae99SBarry Smith /*@C 3630bb7acecfSBarry Smith DMCoarsenHierarchy - Coarsens a `DM` object, all levels at once 363147c6ae99SBarry Smith 3632d083f849SBarry Smith Collective on dm 363347c6ae99SBarry Smith 3634d8d19677SJose E. Roman Input Parameters: 3635bb7acecfSBarry Smith + dm - the `DM` object 363647c6ae99SBarry Smith - nlevels - the number of levels of coarsening 363747c6ae99SBarry Smith 363847c6ae99SBarry Smith Output Parameter: 3639bb7acecfSBarry Smith . dmc - the coarsened `DM` hierarchy 364047c6ae99SBarry Smith 364147c6ae99SBarry Smith Level: developer 364247c6ae99SBarry Smith 3643bb7acecfSBarry Smith .seealso: `DMCoarsen()`, `DMRefineHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 364447c6ae99SBarry Smith 364547c6ae99SBarry Smith @*/ 3646d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHierarchy(DM dm, PetscInt nlevels, DM dmc[]) 3647d71ae5a4SJacob Faibussowitsch { 364847c6ae99SBarry Smith PetscFunctionBegin; 3649171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36507a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 365147c6ae99SBarry Smith if (nlevels == 0) PetscFunctionReturn(0); 365247c6ae99SBarry Smith PetscValidPointer(dmc, 3); 365347c6ae99SBarry Smith if (dm->ops->coarsenhierarchy) { 3654dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, coarsenhierarchy, nlevels, dmc); 365547c6ae99SBarry Smith } else if (dm->ops->coarsen) { 365647c6ae99SBarry Smith PetscInt i; 365747c6ae99SBarry Smith 36589566063dSJacob Faibussowitsch PetscCall(DMCoarsen(dm, PetscObjectComm((PetscObject)dm), &dmc[0])); 365948a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMCoarsen(dmc[i - 1], PetscObjectComm((PetscObject)dm), &dmc[i])); 3660ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No CoarsenHierarchy for this DM yet"); 366147c6ae99SBarry Smith PetscFunctionReturn(0); 366247c6ae99SBarry Smith } 366347c6ae99SBarry Smith 36641a266240SBarry Smith /*@C 3665bb7acecfSBarry Smith DMSetApplicationContextDestroy - Sets a user function that will be called to destroy the application context when the `DM` is destroyed 36661a266240SBarry Smith 3667bb7acecfSBarry Smith Logically Collective if the function is collective 36681a266240SBarry Smith 36691a266240SBarry Smith Input Parameters: 3670bb7acecfSBarry Smith + dm - the `DM` object 36711a266240SBarry Smith - destroy - the destroy function 36721a266240SBarry Smith 36731a266240SBarry Smith Level: intermediate 36741a266240SBarry Smith 3675bb7acecfSBarry Smith .seealso: `DMSetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 36761a266240SBarry Smith 3677f07f9ceaSJed Brown @*/ 3678d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContextDestroy(DM dm, PetscErrorCode (*destroy)(void **)) 3679d71ae5a4SJacob Faibussowitsch { 36801a266240SBarry Smith PetscFunctionBegin; 3681171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36821a266240SBarry Smith dm->ctxdestroy = destroy; 36831a266240SBarry Smith PetscFunctionReturn(0); 36841a266240SBarry Smith } 36851a266240SBarry Smith 3686b07ff414SBarry Smith /*@ 3687bb7acecfSBarry Smith DMSetApplicationContext - Set a user context into a `DM` object 368847c6ae99SBarry Smith 368947c6ae99SBarry Smith Not Collective 369047c6ae99SBarry Smith 369147c6ae99SBarry Smith Input Parameters: 3692bb7acecfSBarry Smith + dm - the `DM` object 369347c6ae99SBarry Smith - ctx - the user context 369447c6ae99SBarry Smith 369547c6ae99SBarry Smith Level: intermediate 369647c6ae99SBarry Smith 3697bb7acecfSBarry Smith Note: 3698bb7acecfSBarry Smith A user context is a way to pass problem specific information that is accessable whenever the `DM` is available 3699bb7acecfSBarry Smith 3700bb7acecfSBarry Smith .seealso: `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 370147c6ae99SBarry Smith 370247c6ae99SBarry Smith @*/ 3703d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContext(DM dm, void *ctx) 3704d71ae5a4SJacob Faibussowitsch { 370547c6ae99SBarry Smith PetscFunctionBegin; 3706171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 370747c6ae99SBarry Smith dm->ctx = ctx; 370847c6ae99SBarry Smith PetscFunctionReturn(0); 370947c6ae99SBarry Smith } 371047c6ae99SBarry Smith 371147c6ae99SBarry Smith /*@ 3712bb7acecfSBarry Smith DMGetApplicationContext - Gets a user context from a `DM` object 371347c6ae99SBarry Smith 371447c6ae99SBarry Smith Not Collective 371547c6ae99SBarry Smith 371647c6ae99SBarry Smith Input Parameter: 3717bb7acecfSBarry Smith . dm - the `DM` object 371847c6ae99SBarry Smith 371947c6ae99SBarry Smith Output Parameter: 372047c6ae99SBarry Smith . ctx - the user context 372147c6ae99SBarry Smith 372247c6ae99SBarry Smith Level: intermediate 372347c6ae99SBarry Smith 3724bb7acecfSBarry Smith Note: 3725bb7acecfSBarry Smith A user context is a way to pass problem specific information that is accessable whenever the `DM` is available 3726bb7acecfSBarry Smith 3727bb7acecfSBarry Smith .seealso: `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 372847c6ae99SBarry Smith 372947c6ae99SBarry Smith @*/ 3730d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetApplicationContext(DM dm, void *ctx) 3731d71ae5a4SJacob Faibussowitsch { 373247c6ae99SBarry Smith PetscFunctionBegin; 3733171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37341b2093e4SBarry Smith *(void **)ctx = dm->ctx; 373547c6ae99SBarry Smith PetscFunctionReturn(0); 373647c6ae99SBarry Smith } 373747c6ae99SBarry Smith 373808da532bSDmitry Karpeev /*@C 3739bb7acecfSBarry Smith DMSetVariableBounds - sets a function to compute the lower and upper bound vectors for `SNESVI`. 374008da532bSDmitry Karpeev 3741d083f849SBarry Smith Logically Collective on dm 374208da532bSDmitry Karpeev 3743d8d19677SJose E. Roman Input Parameters: 374408da532bSDmitry Karpeev + dm - the DM object 37450298fd71SBarry Smith - f - the function that computes variable bounds used by SNESVI (use NULL to cancel a previous function that was set) 374608da532bSDmitry Karpeev 374708da532bSDmitry Karpeev Level: intermediate 374808da532bSDmitry Karpeev 3749bb7acecfSBarry Smith .seealso: `DMComputeVariableBounds()`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`, 3750db781477SPatrick Sanan `DMSetJacobian()` 375108da532bSDmitry Karpeev 375208da532bSDmitry Karpeev @*/ 3753d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVariableBounds(DM dm, PetscErrorCode (*f)(DM, Vec, Vec)) 3754d71ae5a4SJacob Faibussowitsch { 375508da532bSDmitry Karpeev PetscFunctionBegin; 37565a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 375708da532bSDmitry Karpeev dm->ops->computevariablebounds = f; 375808da532bSDmitry Karpeev PetscFunctionReturn(0); 375908da532bSDmitry Karpeev } 376008da532bSDmitry Karpeev 376108da532bSDmitry Karpeev /*@ 3762bb7acecfSBarry Smith DMHasVariableBounds - does the `DM` object have a variable bounds function? 376308da532bSDmitry Karpeev 376408da532bSDmitry Karpeev Not Collective 376508da532bSDmitry Karpeev 376608da532bSDmitry Karpeev Input Parameter: 3767bb7acecfSBarry Smith . dm - the `DM` object to destroy 376808da532bSDmitry Karpeev 376908da532bSDmitry Karpeev Output Parameter: 3770bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the variable bounds function exists 377108da532bSDmitry Karpeev 377208da532bSDmitry Karpeev Level: developer 377308da532bSDmitry Karpeev 3774bb7acecfSBarry Smith .seealso: `DMComputeVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 377508da532bSDmitry Karpeev 377608da532bSDmitry Karpeev @*/ 3777d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasVariableBounds(DM dm, PetscBool *flg) 3778d71ae5a4SJacob Faibussowitsch { 377908da532bSDmitry Karpeev PetscFunctionBegin; 37805a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3781534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 378208da532bSDmitry Karpeev *flg = (dm->ops->computevariablebounds) ? PETSC_TRUE : PETSC_FALSE; 378308da532bSDmitry Karpeev PetscFunctionReturn(0); 378408da532bSDmitry Karpeev } 378508da532bSDmitry Karpeev 378608da532bSDmitry Karpeev /*@C 3787bb7acecfSBarry Smith DMComputeVariableBounds - compute variable bounds used by `SNESVI`. 378808da532bSDmitry Karpeev 3789d083f849SBarry Smith Logically Collective on dm 379008da532bSDmitry Karpeev 3791f899ff85SJose E. Roman Input Parameter: 3792bb7acecfSBarry Smith . dm - the `DM` object 379308da532bSDmitry Karpeev 379408da532bSDmitry Karpeev Output parameters: 379508da532bSDmitry Karpeev + xl - lower bound 379608da532bSDmitry Karpeev - xu - upper bound 379708da532bSDmitry Karpeev 3798907376e6SBarry Smith Level: advanced 3799907376e6SBarry Smith 380095452b02SPatrick Sanan Notes: 380195452b02SPatrick Sanan This is generally not called by users. It calls the function provided by the user with DMSetVariableBounds() 380208da532bSDmitry Karpeev 3803bb7acecfSBarry Smith .seealso: `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 380408da532bSDmitry Karpeev 380508da532bSDmitry Karpeev @*/ 3806d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeVariableBounds(DM dm, Vec xl, Vec xu) 3807d71ae5a4SJacob Faibussowitsch { 380808da532bSDmitry Karpeev PetscFunctionBegin; 38095a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 381008da532bSDmitry Karpeev PetscValidHeaderSpecific(xl, VEC_CLASSID, 2); 38115a84ad33SLisandro Dalcin PetscValidHeaderSpecific(xu, VEC_CLASSID, 3); 3812dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, computevariablebounds, xl, xu); 381308da532bSDmitry Karpeev PetscFunctionReturn(0); 381408da532bSDmitry Karpeev } 381508da532bSDmitry Karpeev 3816b0ae01b7SPeter Brune /*@ 3817bb7acecfSBarry Smith DMHasColoring - does the `DM` object have a method of providing a coloring? 3818b0ae01b7SPeter Brune 3819b0ae01b7SPeter Brune Not Collective 3820b0ae01b7SPeter Brune 3821b0ae01b7SPeter Brune Input Parameter: 3822b0ae01b7SPeter Brune . dm - the DM object 3823b0ae01b7SPeter Brune 3824b0ae01b7SPeter Brune Output Parameter: 3825bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateColoring()`. 3826b0ae01b7SPeter Brune 3827b0ae01b7SPeter Brune Level: developer 3828b0ae01b7SPeter Brune 3829bb7acecfSBarry Smith .seealso: `DMCreateColoring()` 3830b0ae01b7SPeter Brune 3831b0ae01b7SPeter Brune @*/ 3832d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasColoring(DM dm, PetscBool *flg) 3833d71ae5a4SJacob Faibussowitsch { 3834b0ae01b7SPeter Brune PetscFunctionBegin; 38355a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3836534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 3837b0ae01b7SPeter Brune *flg = (dm->ops->getcoloring) ? PETSC_TRUE : PETSC_FALSE; 3838b0ae01b7SPeter Brune PetscFunctionReturn(0); 3839b0ae01b7SPeter Brune } 3840b0ae01b7SPeter Brune 38413ad4599aSBarry Smith /*@ 3842bb7acecfSBarry Smith DMHasCreateRestriction - does the `DM` object have a method of providing a restriction? 38433ad4599aSBarry Smith 38443ad4599aSBarry Smith Not Collective 38453ad4599aSBarry Smith 38463ad4599aSBarry Smith Input Parameter: 3847bb7acecfSBarry Smith . dm - the `DM` object 38483ad4599aSBarry Smith 38493ad4599aSBarry Smith Output Parameter: 3850bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateRestriction()`. 38513ad4599aSBarry Smith 38523ad4599aSBarry Smith Level: developer 38533ad4599aSBarry Smith 3854bb7acecfSBarry Smith .seealso: `DMCreateRestriction()`, `DMHasCreateInterpolation()`, `DMHasCreateInjection()` 38553ad4599aSBarry Smith 38563ad4599aSBarry Smith @*/ 3857d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateRestriction(DM dm, PetscBool *flg) 3858d71ae5a4SJacob Faibussowitsch { 38593ad4599aSBarry Smith PetscFunctionBegin; 38605a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3861534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 38623ad4599aSBarry Smith *flg = (dm->ops->createrestriction) ? PETSC_TRUE : PETSC_FALSE; 38633ad4599aSBarry Smith PetscFunctionReturn(0); 38643ad4599aSBarry Smith } 38653ad4599aSBarry Smith 3866a7058e45SLawrence Mitchell /*@ 3867bb7acecfSBarry Smith DMHasCreateInjection - does the `DM` object have a method of providing an injection? 3868a7058e45SLawrence Mitchell 3869a7058e45SLawrence Mitchell Not Collective 3870a7058e45SLawrence Mitchell 3871a7058e45SLawrence Mitchell Input Parameter: 3872bb7acecfSBarry Smith . dm - the `DM` object 3873a7058e45SLawrence Mitchell 3874a7058e45SLawrence Mitchell Output Parameter: 3875bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateInjection()`. 3876a7058e45SLawrence Mitchell 3877a7058e45SLawrence Mitchell Level: developer 3878a7058e45SLawrence Mitchell 3879bb7acecfSBarry Smith .seealso: `DMCreateInjection()`, `DMHasCreateRestriction()`, `DMHasCreateInterpolation()` 3880a7058e45SLawrence Mitchell 3881a7058e45SLawrence Mitchell @*/ 3882d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateInjection(DM dm, PetscBool *flg) 3883d71ae5a4SJacob Faibussowitsch { 3884a7058e45SLawrence Mitchell PetscFunctionBegin; 38855a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3886534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 3887dbbe0bcdSBarry Smith if (dm->ops->hascreateinjection) PetscUseTypeMethod(dm, hascreateinjection, flg); 3888ad540459SPierre Jolivet else *flg = (dm->ops->createinjection) ? PETSC_TRUE : PETSC_FALSE; 3889a7058e45SLawrence Mitchell PetscFunctionReturn(0); 3890a7058e45SLawrence Mitchell } 3891a7058e45SLawrence Mitchell 38920298fd71SBarry Smith PetscFunctionList DMList = NULL; 3893264ace61SBarry Smith PetscBool DMRegisterAllCalled = PETSC_FALSE; 3894264ace61SBarry Smith 3895264ace61SBarry Smith /*@C 3896bb7acecfSBarry Smith DMSetType - Builds a `DM`, for a particular `DM` implementation. 3897264ace61SBarry Smith 3898d083f849SBarry Smith Collective on dm 3899264ace61SBarry Smith 3900264ace61SBarry Smith Input Parameters: 3901bb7acecfSBarry Smith + dm - The `DM` object 3902bb7acecfSBarry Smith - method - The name of the `DMType`, for example `DMDA`, `DMPLEX` 3903264ace61SBarry Smith 3904264ace61SBarry Smith Options Database Key: 3905bb7acecfSBarry Smith . -dm_type <type> - Sets the `DM` type; use -help for a list of available types 3906264ace61SBarry Smith 3907264ace61SBarry Smith Level: intermediate 3908264ace61SBarry Smith 3909bb7acecfSBarry Smith Note: 3910bb7acecfSBarry Smith Of the `DM` is constructed by directly calling a function to construct a particular `DM`, for example, `DMDACreate2d()` or `DMPLEXCreateBoxMesh()` 3911bb7acecfSBarry Smith 3912bb7acecfSBarry Smith .seealso: `DMType`, `DMDA`, `DMPLEX`, `DMGetType()`, `DMCreate()`, `DMDACreate2d()` 3913264ace61SBarry Smith @*/ 3914d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetType(DM dm, DMType method) 3915d71ae5a4SJacob Faibussowitsch { 3916264ace61SBarry Smith PetscErrorCode (*r)(DM); 3917264ace61SBarry Smith PetscBool match; 3918264ace61SBarry Smith 3919264ace61SBarry Smith PetscFunctionBegin; 3920264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39219566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, method, &match)); 3922264ace61SBarry Smith if (match) PetscFunctionReturn(0); 3923264ace61SBarry Smith 39249566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 39259566063dSJacob Faibussowitsch PetscCall(PetscFunctionListFind(DMList, method, &r)); 39267a8be351SBarry Smith PetscCheck(r, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown DM type: %s", method); 3927264ace61SBarry Smith 3928dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, destroy); 39299566063dSJacob Faibussowitsch PetscCall(PetscMemzero(dm->ops, sizeof(*dm->ops))); 39309566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)dm, method)); 39319566063dSJacob Faibussowitsch PetscCall((*r)(dm)); 3932264ace61SBarry Smith PetscFunctionReturn(0); 3933264ace61SBarry Smith } 3934264ace61SBarry Smith 3935264ace61SBarry Smith /*@C 3936bb7acecfSBarry Smith DMGetType - Gets the `DM` type name (as a string) from the `DM`. 3937264ace61SBarry Smith 3938264ace61SBarry Smith Not Collective 3939264ace61SBarry Smith 3940264ace61SBarry Smith Input Parameter: 3941bb7acecfSBarry Smith . dm - The `DM` 3942264ace61SBarry Smith 3943264ace61SBarry Smith Output Parameter: 3944bb7acecfSBarry Smith . type - The `DMType` name 3945264ace61SBarry Smith 3946264ace61SBarry Smith Level: intermediate 3947264ace61SBarry Smith 3948bb7acecfSBarry Smith .seealso: `DMType`, `DMDA`, `DMPLEX`, `DMSetType()`, `DMCreate()` 3949264ace61SBarry Smith @*/ 3950d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetType(DM dm, DMType *type) 3951d71ae5a4SJacob Faibussowitsch { 3952264ace61SBarry Smith PetscFunctionBegin; 3953264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3954c959eef4SJed Brown PetscValidPointer(type, 2); 39559566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 3956264ace61SBarry Smith *type = ((PetscObject)dm)->type_name; 3957264ace61SBarry Smith PetscFunctionReturn(0); 3958264ace61SBarry Smith } 3959264ace61SBarry Smith 396067a56275SMatthew G Knepley /*@C 3961bb7acecfSBarry Smith DMConvert - Converts a `DM` to another `DM`, either of the same or different type. 396267a56275SMatthew G Knepley 3963d083f849SBarry Smith Collective on dm 396467a56275SMatthew G Knepley 396567a56275SMatthew G Knepley Input Parameters: 3966bb7acecfSBarry Smith + dm - the `DM` 3967bb7acecfSBarry Smith - newtype - new `DM` type (use "same" for the same type) 396867a56275SMatthew G Knepley 396967a56275SMatthew G Knepley Output Parameter: 3970bb7acecfSBarry Smith . M - pointer to new `DM` 397167a56275SMatthew G Knepley 397267a56275SMatthew G Knepley Notes: 3973bb7acecfSBarry Smith Cannot be used to convert a sequential `DM` to a parallel or a parallel to sequential, 3974bb7acecfSBarry Smith the MPI communicator of the generated `DM` is always the same as the communicator 3975bb7acecfSBarry Smith of the input `DM`. 397667a56275SMatthew G Knepley 397767a56275SMatthew G Knepley Level: intermediate 397867a56275SMatthew G Knepley 3979bb7acecfSBarry Smith .seealso: `DM`, `DMSetType()`, `DMCreate()`, `DMClone()` 398067a56275SMatthew G Knepley @*/ 3981d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConvert(DM dm, DMType newtype, DM *M) 3982d71ae5a4SJacob Faibussowitsch { 398367a56275SMatthew G Knepley DM B; 398467a56275SMatthew G Knepley char convname[256]; 3985c067b6caSMatthew G. Knepley PetscBool sametype /*, issame */; 398667a56275SMatthew G Knepley 398767a56275SMatthew G Knepley PetscFunctionBegin; 398867a56275SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 398967a56275SMatthew G Knepley PetscValidType(dm, 1); 399067a56275SMatthew G Knepley PetscValidPointer(M, 3); 39919566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, newtype, &sametype)); 39929566063dSJacob Faibussowitsch /* PetscCall(PetscStrcmp(newtype, "same", &issame)); */ 3993c067b6caSMatthew G. Knepley if (sametype) { 3994c067b6caSMatthew G. Knepley *M = dm; 39959566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 3996c067b6caSMatthew G. Knepley PetscFunctionReturn(0); 3997c067b6caSMatthew G. Knepley } else { 39980298fd71SBarry Smith PetscErrorCode (*conv)(DM, DMType, DM *) = NULL; 399967a56275SMatthew G Knepley 400067a56275SMatthew G Knepley /* 400167a56275SMatthew G Knepley Order of precedence: 400267a56275SMatthew G Knepley 1) See if a specialized converter is known to the current DM. 400367a56275SMatthew G Knepley 2) See if a specialized converter is known to the desired DM class. 400467a56275SMatthew G Knepley 3) See if a good general converter is registered for the desired class 400567a56275SMatthew G Knepley 4) See if a good general converter is known for the current matrix. 400667a56275SMatthew G Knepley 5) Use a really basic converter. 400767a56275SMatthew G Knepley */ 400867a56275SMatthew G Knepley 400967a56275SMatthew G Knepley /* 1) See if a specialized converter is known to the current DM and the desired class */ 40109566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 40119566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 40129566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 40139566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 40149566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 40159566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)dm, convname, &conv)); 401667a56275SMatthew G Knepley if (conv) goto foundconv; 401767a56275SMatthew G Knepley 401867a56275SMatthew G Knepley /* 2) See if a specialized converter is known to the desired DM class. */ 40199566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &B)); 40209566063dSJacob Faibussowitsch PetscCall(DMSetType(B, newtype)); 40219566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 40229566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 40239566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 40249566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 40259566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 40269566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)B, convname, &conv)); 402767a56275SMatthew G Knepley if (conv) { 40289566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 402967a56275SMatthew G Knepley goto foundconv; 403067a56275SMatthew G Knepley } 403167a56275SMatthew G Knepley 403267a56275SMatthew G Knepley #if 0 403367a56275SMatthew G Knepley /* 3) See if a good general converter is registered for the desired class */ 403467a56275SMatthew G Knepley conv = B->ops->convertfrom; 40359566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 403667a56275SMatthew G Knepley if (conv) goto foundconv; 403767a56275SMatthew G Knepley 403867a56275SMatthew G Knepley /* 4) See if a good general converter is known for the current matrix */ 403967a56275SMatthew G Knepley if (dm->ops->convert) { 404067a56275SMatthew G Knepley conv = dm->ops->convert; 404167a56275SMatthew G Knepley } 404267a56275SMatthew G Knepley if (conv) goto foundconv; 404367a56275SMatthew G Knepley #endif 404467a56275SMatthew G Knepley 404567a56275SMatthew G Knepley /* 5) Use a really basic converter. */ 404698921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No conversion possible between DM types %s and %s", ((PetscObject)dm)->type_name, newtype); 404767a56275SMatthew G Knepley 404867a56275SMatthew G Knepley foundconv: 40499566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Convert, dm, 0, 0, 0)); 40509566063dSJacob Faibussowitsch PetscCall((*conv)(dm, newtype, M)); 405112fa691eSMatthew G. Knepley /* Things that are independent of DM type: We should consult DMClone() here */ 405290b157c4SStefano Zampini { 40534fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 40546858538eSMatthew G. Knepley 40554fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 40564fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*M, maxCell, Lstart, L)); 4057c8a6034eSMark (*M)->prealloc_only = dm->prealloc_only; 40589566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->vectype)); 40599566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*M)->vectype)); 40609566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->mattype)); 40619566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*M)->mattype)); 406212fa691eSMatthew G. Knepley } 40639566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Convert, dm, 0, 0, 0)); 406467a56275SMatthew G Knepley } 40659566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)*M)); 406667a56275SMatthew G Knepley PetscFunctionReturn(0); 406767a56275SMatthew G Knepley } 4068264ace61SBarry Smith 4069264ace61SBarry Smith /*--------------------------------------------------------------------------------------------------------------------*/ 4070264ace61SBarry Smith 4071264ace61SBarry Smith /*@C 4072bb7acecfSBarry Smith DMRegister - Adds a new `DM` type implementation 40731c84c290SBarry Smith 40741c84c290SBarry Smith Not Collective 40751c84c290SBarry Smith 40761c84c290SBarry Smith Input Parameters: 40771c84c290SBarry Smith + name - The name of a new user-defined creation routine 40781c84c290SBarry Smith - create_func - The creation routine itself 40791c84c290SBarry Smith 40801c84c290SBarry Smith Notes: 4081bb7acecfSBarry Smith DMRegister() may be called multiple times to add several user-defined `DM`s 40821c84c290SBarry Smith 40831c84c290SBarry Smith Sample usage: 40841c84c290SBarry Smith .vb 4085bdf89e91SBarry Smith DMRegister("my_da", MyDMCreate); 40861c84c290SBarry Smith .ve 40871c84c290SBarry Smith 40881c84c290SBarry Smith Then, your DM type can be chosen with the procedural interface via 40891c84c290SBarry Smith .vb 40901c84c290SBarry Smith DMCreate(MPI_Comm, DM *); 40911c84c290SBarry Smith DMSetType(DM,"my_da"); 40921c84c290SBarry Smith .ve 40931c84c290SBarry Smith or at runtime via the option 40941c84c290SBarry Smith .vb 40951c84c290SBarry Smith -da_type my_da 40961c84c290SBarry Smith .ve 4097264ace61SBarry Smith 4098264ace61SBarry Smith Level: advanced 40991c84c290SBarry Smith 4100bb7acecfSBarry Smith .seealso: `DM`, `DMType`, `DMSetType()`, `DMRegisterAll()`, `DMRegisterDestroy()` 41011c84c290SBarry Smith 4102264ace61SBarry Smith @*/ 4103d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRegister(const char sname[], PetscErrorCode (*function)(DM)) 4104d71ae5a4SJacob Faibussowitsch { 4105264ace61SBarry Smith PetscFunctionBegin; 41069566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 41079566063dSJacob Faibussowitsch PetscCall(PetscFunctionListAdd(&DMList, sname, function)); 4108264ace61SBarry Smith PetscFunctionReturn(0); 4109264ace61SBarry Smith } 4110264ace61SBarry Smith 4111b859378eSBarry Smith /*@C 4112bb7acecfSBarry Smith DMLoad - Loads a DM that has been stored in binary with `DMView()`. 4113b859378eSBarry Smith 4114d083f849SBarry Smith Collective on viewer 4115b859378eSBarry Smith 4116b859378eSBarry Smith Input Parameters: 4117bb7acecfSBarry Smith + newdm - the newly loaded `DM`, this needs to have been created with `DMCreate()` or 4118bb7acecfSBarry Smith some related function before a call to `DMLoad()`. 4119bb7acecfSBarry Smith - viewer - binary file viewer, obtained from `PetscViewerBinaryOpen()` or 4120bb7acecfSBarry Smith `PETSCVIEWERHDF5` file viewer, obtained from `PetscViewerHDF5Open()` 4121b859378eSBarry Smith 4122b859378eSBarry Smith Level: intermediate 4123b859378eSBarry Smith 4124b859378eSBarry Smith Notes: 412555849f57SBarry Smith The type is determined by the data in the file, any type set into the DM before this call is ignored. 4126b859378eSBarry Smith 4127bb7acecfSBarry Smith Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` format, one can save multiple `DMPLEX` 4128bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 4129bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 4130cd7e8a5eSksagiyam 4131b859378eSBarry Smith Notes for advanced users: 4132b859378eSBarry Smith Most users should not need to know the details of the binary storage 4133bb7acecfSBarry Smith format, since `DMLoad()` and `DMView()` completely hide these details. 4134b859378eSBarry Smith But for anyone who's interested, the standard binary matrix storage 4135b859378eSBarry Smith format is 4136b859378eSBarry Smith .vb 4137b859378eSBarry Smith has not yet been determined 4138b859378eSBarry Smith .ve 4139b859378eSBarry Smith 4140db781477SPatrick Sanan .seealso: `PetscViewerBinaryOpen()`, `DMView()`, `MatLoad()`, `VecLoad()` 4141b859378eSBarry Smith @*/ 4142d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLoad(DM newdm, PetscViewer viewer) 4143d71ae5a4SJacob Faibussowitsch { 41449331c7a4SMatthew G. Knepley PetscBool isbinary, ishdf5; 4145b859378eSBarry Smith 4146b859378eSBarry Smith PetscFunctionBegin; 4147b859378eSBarry Smith PetscValidHeaderSpecific(newdm, DM_CLASSID, 1); 4148b859378eSBarry Smith PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 41499566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckReadable(viewer)); 41509566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 41519566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 41529566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Load, viewer, 0, 0, 0)); 41539331c7a4SMatthew G. Knepley if (isbinary) { 41549331c7a4SMatthew G. Knepley PetscInt classid; 41559331c7a4SMatthew G. Knepley char type[256]; 4156b859378eSBarry Smith 41579566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &classid, 1, NULL, PETSC_INT)); 41587a8be351SBarry Smith PetscCheck(classid == DM_FILE_CLASSID, PetscObjectComm((PetscObject)newdm), PETSC_ERR_ARG_WRONG, "Not DM next in file, classid found %d", (int)classid); 41599566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, type, 256, NULL, PETSC_CHAR)); 41609566063dSJacob Faibussowitsch PetscCall(DMSetType(newdm, type)); 4161dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 41629331c7a4SMatthew G. Knepley } else if (ishdf5) { 4163dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 41649331c7a4SMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerBinaryOpen() or PetscViewerHDF5Open()"); 41659566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Load, viewer, 0, 0, 0)); 4166b859378eSBarry Smith PetscFunctionReturn(0); 4167b859378eSBarry Smith } 4168b859378eSBarry Smith 41697da65231SMatthew G Knepley /******************************** FEM Support **********************************/ 41707da65231SMatthew G Knepley 4171d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellVector(PetscInt c, const char name[], PetscInt len, const PetscScalar x[]) 4172d71ae5a4SJacob Faibussowitsch { 41731d47ebbbSSatish Balay PetscInt f; 41741b30c384SMatthew G Knepley 41757da65231SMatthew G Knepley PetscFunctionBegin; 417663a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 417748a46eb9SPierre Jolivet for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %g |\n", (double)PetscRealPart(x[f]))); 41787da65231SMatthew G Knepley PetscFunctionReturn(0); 41797da65231SMatthew G Knepley } 41807da65231SMatthew G Knepley 4181d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellMatrix(PetscInt c, const char name[], PetscInt rows, PetscInt cols, const PetscScalar A[]) 4182d71ae5a4SJacob Faibussowitsch { 41831b30c384SMatthew G Knepley PetscInt f, g; 41847da65231SMatthew G Knepley 41857da65231SMatthew G Knepley PetscFunctionBegin; 418663a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 41871d47ebbbSSatish Balay for (f = 0; f < rows; ++f) { 41889566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |")); 418948a46eb9SPierre Jolivet for (g = 0; g < cols; ++g) PetscCall(PetscPrintf(PETSC_COMM_SELF, " % 9.5g", (double)PetscRealPart(A[f * cols + g]))); 41909566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |\n")); 41917da65231SMatthew G Knepley } 41927da65231SMatthew G Knepley PetscFunctionReturn(0); 41937da65231SMatthew G Knepley } 4194e7c4fc90SDmitry Karpeev 4195d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintLocalVec(DM dm, const char name[], PetscReal tol, Vec X) 4196d71ae5a4SJacob Faibussowitsch { 41970c5b8624SToby Isaac PetscInt localSize, bs; 41980c5b8624SToby Isaac PetscMPIInt size; 41990c5b8624SToby Isaac Vec x, xglob; 42000c5b8624SToby Isaac const PetscScalar *xarray; 4201e759306cSMatthew G. Knepley 4202e759306cSMatthew G. Knepley PetscFunctionBegin; 42039566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 42049566063dSJacob Faibussowitsch PetscCall(VecDuplicate(X, &x)); 42059566063dSJacob Faibussowitsch PetscCall(VecCopy(X, x)); 42069566063dSJacob Faibussowitsch PetscCall(VecChop(x, tol)); 42079566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "%s:\n", name)); 42080c5b8624SToby Isaac if (size > 1) { 42099566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(x, &localSize)); 42109566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xarray)); 42119566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize(x, &bs)); 42129566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)dm), bs, localSize, PETSC_DETERMINE, xarray, &xglob)); 42130c5b8624SToby Isaac } else { 42140c5b8624SToby Isaac xglob = x; 42150c5b8624SToby Isaac } 42169566063dSJacob Faibussowitsch PetscCall(VecView(xglob, PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)dm)))); 42170c5b8624SToby Isaac if (size > 1) { 42189566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xglob)); 42199566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xarray)); 42200c5b8624SToby Isaac } 42219566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 4222e759306cSMatthew G. Knepley PetscFunctionReturn(0); 4223e759306cSMatthew G. Knepley } 4224e759306cSMatthew G. Knepley 422588ed4aceSMatthew G Knepley /*@ 4226bb7acecfSBarry Smith DMGetSection - Get the `PetscSection` encoding the local data layout for the `DM`. This is equivalent to `DMGetLocalSection()`. Deprecated in v3.12 4227061576a5SJed Brown 4228061576a5SJed Brown Input Parameter: 4229bb7acecfSBarry Smith . dm - The `DM` 4230061576a5SJed Brown 4231061576a5SJed Brown Output Parameter: 4232bb7acecfSBarry Smith . section - The `PetscSection` 4233061576a5SJed Brown 4234061576a5SJed Brown Options Database Keys: 4235bb7acecfSBarry Smith . -dm_petscsection_view - View the `PetscSection` created by the `DM` 4236061576a5SJed Brown 4237061576a5SJed Brown Level: advanced 4238061576a5SJed Brown 4239061576a5SJed Brown Notes: 4240bb7acecfSBarry Smith Use `DMGetLocalSection()` in new code. 4241061576a5SJed Brown 4242bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 4243061576a5SJed Brown 4244db781477SPatrick Sanan .seealso: `DMGetLocalSection()`, `DMSetLocalSection()`, `DMGetGlobalSection()` 4245061576a5SJed Brown @*/ 4246d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSection(DM dm, PetscSection *section) 4247d71ae5a4SJacob Faibussowitsch { 4248061576a5SJed Brown PetscFunctionBegin; 42499566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, section)); 4250061576a5SJed Brown PetscFunctionReturn(0); 4251061576a5SJed Brown } 4252061576a5SJed Brown 4253061576a5SJed Brown /*@ 4254bb7acecfSBarry Smith DMGetLocalSection - Get the `PetscSection` encoding the local data layout for the `DM`. 425588ed4aceSMatthew G Knepley 425688ed4aceSMatthew G Knepley Input Parameter: 4257bb7acecfSBarry Smith . dm - The `DM` 425888ed4aceSMatthew G Knepley 425988ed4aceSMatthew G Knepley Output Parameter: 4260bb7acecfSBarry Smith . section - The `PetscSection` 426188ed4aceSMatthew G Knepley 4262e5893cccSMatthew G. Knepley Options Database Keys: 4263bb7acecfSBarry Smith . -dm_petscsection_view - View the section created by the `DM` 4264e5893cccSMatthew G. Knepley 426588ed4aceSMatthew G Knepley Level: intermediate 426688ed4aceSMatthew G Knepley 4267bb7acecfSBarry Smith Note: 4268bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 426988ed4aceSMatthew G Knepley 4270db781477SPatrick Sanan .seealso: `DMSetLocalSection()`, `DMGetGlobalSection()` 427188ed4aceSMatthew G Knepley @*/ 4272d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalSection(DM dm, PetscSection *section) 4273d71ae5a4SJacob Faibussowitsch { 427488ed4aceSMatthew G Knepley PetscFunctionBegin; 427588ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 427688ed4aceSMatthew G Knepley PetscValidPointer(section, 2); 42771bb6d2a8SBarry Smith if (!dm->localSection && dm->ops->createlocalsection) { 4278e5e52638SMatthew G. Knepley PetscInt d; 4279e5e52638SMatthew G. Knepley 428045480ffeSMatthew G. Knepley if (dm->setfromoptionscalled) { 428145480ffeSMatthew G. Knepley PetscObject obj = (PetscObject)dm; 428245480ffeSMatthew G. Knepley PetscViewer viewer; 428345480ffeSMatthew G. Knepley PetscViewerFormat format; 428445480ffeSMatthew G. Knepley PetscBool flg; 428545480ffeSMatthew G. Knepley 42869566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetViewer(PetscObjectComm(obj), obj->options, obj->prefix, "-dm_petscds_view", &viewer, &format, &flg)); 42879566063dSJacob Faibussowitsch if (flg) PetscCall(PetscViewerPushFormat(viewer, format)); 428845480ffeSMatthew G. Knepley for (d = 0; d < dm->Nds; ++d) { 42899566063dSJacob Faibussowitsch PetscCall(PetscDSSetFromOptions(dm->probs[d].ds)); 42909566063dSJacob Faibussowitsch if (flg) PetscCall(PetscDSView(dm->probs[d].ds, viewer)); 429145480ffeSMatthew G. Knepley } 429245480ffeSMatthew G. Knepley if (flg) { 42939566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 42949566063dSJacob Faibussowitsch PetscCall(PetscViewerPopFormat(viewer)); 42959566063dSJacob Faibussowitsch PetscCall(PetscViewerDestroy(&viewer)); 429645480ffeSMatthew G. Knepley } 429745480ffeSMatthew G. Knepley } 4298dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalsection); 42999566063dSJacob Faibussowitsch if (dm->localSection) PetscCall(PetscObjectViewFromOptions((PetscObject)dm->localSection, NULL, "-dm_petscsection_view")); 43002f0f8703SMatthew G. Knepley } 43011bb6d2a8SBarry Smith *section = dm->localSection; 430288ed4aceSMatthew G Knepley PetscFunctionReturn(0); 430388ed4aceSMatthew G Knepley } 430488ed4aceSMatthew G Knepley 430588ed4aceSMatthew G Knepley /*@ 4306bb7acecfSBarry Smith DMSetSection - Set the `PetscSection` encoding the local data layout for the `DM`. This is equivalent to `DMSetLocalSection()`. Deprecated in v3.12 4307061576a5SJed Brown 4308061576a5SJed Brown Input Parameters: 4309bb7acecfSBarry Smith + dm - The `DM` 4310bb7acecfSBarry Smith - section - The `PetscSection` 4311061576a5SJed Brown 4312061576a5SJed Brown Level: advanced 4313061576a5SJed Brown 4314061576a5SJed Brown Notes: 4315bb7acecfSBarry Smith Use `DMSetLocalSection()` in new code. 4316061576a5SJed Brown 4317bb7acecfSBarry Smith Any existing `PetscSection` will be destroyed 4318061576a5SJed Brown 4319db781477SPatrick Sanan .seealso: `DMSetLocalSection()`, `DMGetLocalSection()`, `DMSetGlobalSection()` 4320061576a5SJed Brown @*/ 4321d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSection(DM dm, PetscSection section) 4322d71ae5a4SJacob Faibussowitsch { 4323061576a5SJed Brown PetscFunctionBegin; 43249566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm, section)); 4325061576a5SJed Brown PetscFunctionReturn(0); 4326061576a5SJed Brown } 4327061576a5SJed Brown 4328061576a5SJed Brown /*@ 4329bb7acecfSBarry Smith DMSetLocalSection - Set the `PetscSection` encoding the local data layout for the `DM`. 433088ed4aceSMatthew G Knepley 433188ed4aceSMatthew G Knepley Input Parameters: 4332bb7acecfSBarry Smith + dm - The `DM` 4333bb7acecfSBarry Smith - section - The `PetscSection` 433488ed4aceSMatthew G Knepley 433588ed4aceSMatthew G Knepley Level: intermediate 433688ed4aceSMatthew G Knepley 4337bb7acecfSBarry Smith Note: 4338bb7acecfSBarry Smith Any existing Section will be destroyed 433988ed4aceSMatthew G Knepley 4340bb7acecfSBarry Smith .seealso: `PetscSection`, `DMGetLocalSection()`, `DMSetGlobalSection()` 434188ed4aceSMatthew G Knepley @*/ 4342d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLocalSection(DM dm, PetscSection section) 4343d71ae5a4SJacob Faibussowitsch { 4344c473ab19SMatthew G. Knepley PetscInt numFields = 0; 4345af122d2aSMatthew G Knepley PetscInt f; 434688ed4aceSMatthew G Knepley 434788ed4aceSMatthew G Knepley PetscFunctionBegin; 434888ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4349b9d85ea2SLisandro Dalcin if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 43509566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 43519566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->localSection)); 43521bb6d2a8SBarry Smith dm->localSection = section; 43539566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(dm->localSection, &numFields)); 4354af122d2aSMatthew G Knepley if (numFields) { 43559566063dSJacob Faibussowitsch PetscCall(DMSetNumFields(dm, numFields)); 4356af122d2aSMatthew G Knepley for (f = 0; f < numFields; ++f) { 43570f21e855SMatthew G. Knepley PetscObject disc; 4358af122d2aSMatthew G Knepley const char *name; 4359af122d2aSMatthew G Knepley 43609566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(dm->localSection, f, &name)); 43619566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &disc)); 43629566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName(disc, name)); 4363af122d2aSMatthew G Knepley } 4364af122d2aSMatthew G Knepley } 4365e87a4003SBarry Smith /* The global section will be rebuilt in the next call to DMGetGlobalSection(). */ 43669566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 436788ed4aceSMatthew G Knepley PetscFunctionReturn(0); 436888ed4aceSMatthew G Knepley } 436988ed4aceSMatthew G Knepley 43709435951eSToby Isaac /*@ 4371bb7acecfSBarry Smith DMGetDefaultConstraints - Get the `PetscSection` and `Mat` that specify the local constraint interpolation. See `DMSetDefaultConstraints()` for a description of the purpose of constraint interpolation. 43729435951eSToby Isaac 4373e228b242SToby Isaac not collective 4374e228b242SToby Isaac 43759435951eSToby Isaac Input Parameter: 4376bb7acecfSBarry Smith . dm - The `DM` 43779435951eSToby Isaac 4378d8d19677SJose E. Roman Output Parameters: 4379bb7acecfSBarry Smith + section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Returns NULL if there are no local constraints. 4380bb7acecfSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section. Returns NULL if there are no local constraints. 438179769bd5SJed Brown - bias - Vector containing bias to be added to constrained dofs 43829435951eSToby Isaac 43839435951eSToby Isaac Level: advanced 43849435951eSToby Isaac 4385bb7acecfSBarry Smith Note: 4386bb7acecfSBarry Smith This gets borrowed references, so the user should not destroy the `PetscSection`, `Mat`, or `Vec`. 43879435951eSToby Isaac 4388db781477SPatrick Sanan .seealso: `DMSetDefaultConstraints()` 43899435951eSToby Isaac @*/ 4390d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDefaultConstraints(DM dm, PetscSection *section, Mat *mat, Vec *bias) 4391d71ae5a4SJacob Faibussowitsch { 43929435951eSToby Isaac PetscFunctionBegin; 43939435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4394dbbe0bcdSBarry Smith if (!dm->defaultConstraint.section && !dm->defaultConstraint.mat && dm->ops->createdefaultconstraints) PetscUseTypeMethod(dm, createdefaultconstraints); 43953b8ba7d1SJed Brown if (section) *section = dm->defaultConstraint.section; 43963b8ba7d1SJed Brown if (mat) *mat = dm->defaultConstraint.mat; 439779769bd5SJed Brown if (bias) *bias = dm->defaultConstraint.bias; 43989435951eSToby Isaac PetscFunctionReturn(0); 43999435951eSToby Isaac } 44009435951eSToby Isaac 44019435951eSToby Isaac /*@ 4402bb7acecfSBarry Smith DMSetDefaultConstraints - Set the `PetscSection` and `Mat` that specify the local constraint interpolation. 44039435951eSToby Isaac 4404bb7acecfSBarry Smith If a constraint matrix is specified, then it is applied during `DMGlobalToLocalEnd()` when mode is `INSERT_VALUES`, `INSERT_BC_VALUES`, or `INSERT_ALL_VALUES`. Without a constraint matrix, the local vector l returned by `DMGlobalToLocalEnd()` contains values that have been scattered from a global vector without modification; with a constraint matrix A, l is modified by computing c = A * l + bias, l[s[i]] = c[i], where the scatter s is defined by the `PetscSection` returned by `DMGetDefaultConstraints()`. 44059435951eSToby Isaac 4406bb7acecfSBarry Smith If a constraint matrix is specified, then its adjoint is applied during `DMLocalToGlobalBegin()` when mode is `ADD_VALUES`, `ADD_BC_VALUES`, or `ADD_ALL_VALUES`. Without a constraint matrix, the local vector l is accumulated into a global vector without modification; with a constraint matrix A, l is first modified by computing c[i] = l[s[i]], l[s[i]] = 0, l = l + A'*c, which is the adjoint of the operation described above. Any bias, if specified, is ignored when accumulating. 44079435951eSToby Isaac 4408e228b242SToby Isaac collective on dm 4409e228b242SToby Isaac 44109435951eSToby Isaac Input Parameters: 4411bb7acecfSBarry Smith + dm - The `DM` 4412bb7acecfSBarry Smith . section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 4413bb7acecfSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section: NULL indicates no constraints. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 4414bb7acecfSBarry Smith - bias - A bias vector to be added to constrained values in the local vector. NULL indicates no bias. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 44159435951eSToby Isaac 44169435951eSToby Isaac Level: advanced 44179435951eSToby Isaac 4418bb7acecfSBarry Smith Note: 4419bb7acecfSBarry Smith This increments the references of the `PetscSection`, `Mat`, and `Vec`, so they user can destroy them. 44209435951eSToby Isaac 4421db781477SPatrick Sanan .seealso: `DMGetDefaultConstraints()` 44229435951eSToby Isaac @*/ 4423d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDefaultConstraints(DM dm, PetscSection section, Mat mat, Vec bias) 4424d71ae5a4SJacob Faibussowitsch { 4425e228b242SToby Isaac PetscMPIInt result; 44269435951eSToby Isaac 44279435951eSToby Isaac PetscFunctionBegin; 44289435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4429e228b242SToby Isaac if (section) { 4430e228b242SToby Isaac PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 44319566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)section), &result)); 44327a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint section must have local communicator"); 4433e228b242SToby Isaac } 4434e228b242SToby Isaac if (mat) { 4435e228b242SToby Isaac PetscValidHeaderSpecific(mat, MAT_CLASSID, 3); 44369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)mat), &result)); 44377a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint matrix must have local communicator"); 4438e228b242SToby Isaac } 443979769bd5SJed Brown if (bias) { 444079769bd5SJed Brown PetscValidHeaderSpecific(bias, VEC_CLASSID, 4); 44419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)bias), &result)); 444279769bd5SJed Brown PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint bias must have local communicator"); 444379769bd5SJed Brown } 44449566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 44459566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->defaultConstraint.section)); 44463b8ba7d1SJed Brown dm->defaultConstraint.section = section; 44479566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mat)); 44489566063dSJacob Faibussowitsch PetscCall(MatDestroy(&dm->defaultConstraint.mat)); 44493b8ba7d1SJed Brown dm->defaultConstraint.mat = mat; 44509566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)bias)); 44519566063dSJacob Faibussowitsch PetscCall(VecDestroy(&dm->defaultConstraint.bias)); 445279769bd5SJed Brown dm->defaultConstraint.bias = bias; 44539435951eSToby Isaac PetscFunctionReturn(0); 44549435951eSToby Isaac } 44559435951eSToby Isaac 4456497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 4457507e4973SMatthew G. Knepley /* 4458bb7acecfSBarry Smith DMDefaultSectionCheckConsistency - Check the consistentcy of the global and local sections. Generates and error if they are not consistent. 4459507e4973SMatthew G. Knepley 4460507e4973SMatthew G. Knepley Input Parameters: 4461bb7acecfSBarry Smith + dm - The `DM` 4462bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4463bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 4464507e4973SMatthew G. Knepley 4465507e4973SMatthew G. Knepley Level: intermediate 4466507e4973SMatthew G. Knepley 4467db781477SPatrick Sanan .seealso: `DMGetSectionSF()`, `DMSetSectionSF()` 4468507e4973SMatthew G. Knepley */ 4469d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(DM dm, PetscSection localSection, PetscSection globalSection) 4470d71ae5a4SJacob Faibussowitsch { 4471507e4973SMatthew G. Knepley MPI_Comm comm; 4472507e4973SMatthew G. Knepley PetscLayout layout; 4473507e4973SMatthew G. Knepley const PetscInt *ranges; 4474507e4973SMatthew G. Knepley PetscInt pStart, pEnd, p, nroots; 4475507e4973SMatthew G. Knepley PetscMPIInt size, rank; 4476507e4973SMatthew G. Knepley PetscBool valid = PETSC_TRUE, gvalid; 4477507e4973SMatthew G. Knepley 4478507e4973SMatthew G. Knepley PetscFunctionBegin; 44799566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 4480507e4973SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 44819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 44829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 44839566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(globalSection, &pStart, &pEnd)); 44849566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &nroots)); 44859566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &layout)); 44869566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(layout, 1)); 44879566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(layout, nroots)); 44889566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(layout)); 44899566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(layout, &ranges)); 4490507e4973SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 4491f741bcd2SMatthew G. Knepley PetscInt dof, cdof, off, gdof, gcdof, goff, gsize, d; 4492507e4973SMatthew G. Knepley 44939566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(localSection, p, &dof)); 44949566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(localSection, p, &off)); 44959566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(localSection, p, &cdof)); 44969566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(globalSection, p, &gdof)); 44979566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(globalSection, p, &gcdof)); 44989566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalSection, p, &goff)); 4499507e4973SMatthew G. Knepley if (!gdof) continue; /* Censored point */ 45009371c9d4SSatish Balay if ((gdof < 0 ? -(gdof + 1) : gdof) != dof) { 45019371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local dof %" PetscInt_FMT "\n", rank, gdof, p, dof)); 45029371c9d4SSatish Balay valid = PETSC_FALSE; 45039371c9d4SSatish Balay } 45049371c9d4SSatish Balay if (gcdof && (gcdof != cdof)) { 45059371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global constraints %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local constraints %" PetscInt_FMT "\n", rank, gcdof, p, cdof)); 45069371c9d4SSatish Balay valid = PETSC_FALSE; 45079371c9d4SSatish Balay } 4508507e4973SMatthew G. Knepley if (gdof < 0) { 4509507e4973SMatthew G. Knepley gsize = gdof < 0 ? -(gdof + 1) - gcdof : gdof - gcdof; 4510507e4973SMatthew G. Knepley for (d = 0; d < gsize; ++d) { 4511507e4973SMatthew G. Knepley PetscInt offset = -(goff + 1) + d, r; 4512507e4973SMatthew G. Knepley 45139566063dSJacob Faibussowitsch PetscCall(PetscFindInt(offset, size + 1, ranges, &r)); 4514507e4973SMatthew G. Knepley if (r < 0) r = -(r + 2); 45159371c9d4SSatish Balay if ((r < 0) || (r >= size)) { 45169371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Point %" PetscInt_FMT " mapped to invalid process %" PetscInt_FMT " (%" PetscInt_FMT ", %" PetscInt_FMT ")\n", rank, p, r, gdof, goff)); 45179371c9d4SSatish Balay valid = PETSC_FALSE; 45189371c9d4SSatish Balay break; 45199371c9d4SSatish Balay } 4520507e4973SMatthew G. Knepley } 4521507e4973SMatthew G. Knepley } 4522507e4973SMatthew G. Knepley } 45239566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&layout)); 45249566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, NULL)); 45251c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&valid, &gvalid, 1, MPIU_BOOL, MPI_LAND, comm)); 4526507e4973SMatthew G. Knepley if (!gvalid) { 45279566063dSJacob Faibussowitsch PetscCall(DMView(dm, NULL)); 4528507e4973SMatthew G. Knepley SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Inconsistent local and global sections"); 4529507e4973SMatthew G. Knepley } 4530507e4973SMatthew G. Knepley PetscFunctionReturn(0); 4531507e4973SMatthew G. Knepley } 4532f741bcd2SMatthew G. Knepley #endif 4533507e4973SMatthew G. Knepley 453488ed4aceSMatthew G Knepley /*@ 4535bb7acecfSBarry Smith DMGetGlobalSection - Get the `PetscSection` encoding the global data layout for the `DM`. 453688ed4aceSMatthew G Knepley 4537d083f849SBarry Smith Collective on dm 45388b1ab98fSJed Brown 453988ed4aceSMatthew G Knepley Input Parameter: 4540bb7acecfSBarry Smith . dm - The `DM` 454188ed4aceSMatthew G Knepley 454288ed4aceSMatthew G Knepley Output Parameter: 4543bb7acecfSBarry Smith . section - The `PetscSection` 454488ed4aceSMatthew G Knepley 454588ed4aceSMatthew G Knepley Level: intermediate 454688ed4aceSMatthew G Knepley 4547bb7acecfSBarry Smith Note: 4548bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 454988ed4aceSMatthew G Knepley 4550db781477SPatrick Sanan .seealso: `DMSetLocalSection()`, `DMGetLocalSection()` 455188ed4aceSMatthew G Knepley @*/ 4552d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetGlobalSection(DM dm, PetscSection *section) 4553d71ae5a4SJacob Faibussowitsch { 455488ed4aceSMatthew G Knepley PetscFunctionBegin; 455588ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 455688ed4aceSMatthew G Knepley PetscValidPointer(section, 2); 45571bb6d2a8SBarry Smith if (!dm->globalSection) { 4558fd59a867SMatthew G. Knepley PetscSection s; 4559fd59a867SMatthew G. Knepley 45609566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 45617a8be351SBarry Smith PetscCheck(s, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a default PetscSection in order to create a global PetscSection"); 45627a8be351SBarry Smith PetscCheck(dm->sf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a point PetscSF in order to create a global PetscSection"); 45639566063dSJacob Faibussowitsch PetscCall(PetscSectionCreateGlobalSection(s, dm->sf, PETSC_FALSE, PETSC_FALSE, &dm->globalSection)); 45649566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&dm->map)); 45659566063dSJacob Faibussowitsch PetscCall(PetscSectionGetValueLayout(PetscObjectComm((PetscObject)dm), dm->globalSection, &dm->map)); 45669566063dSJacob Faibussowitsch PetscCall(PetscSectionViewFromOptions(dm->globalSection, NULL, "-global_section_view")); 456788ed4aceSMatthew G Knepley } 45681bb6d2a8SBarry Smith *section = dm->globalSection; 456988ed4aceSMatthew G Knepley PetscFunctionReturn(0); 457088ed4aceSMatthew G Knepley } 457188ed4aceSMatthew G Knepley 4572b21d0597SMatthew G Knepley /*@ 4573bb7acecfSBarry Smith DMSetGlobalSection - Set the `PetscSection` encoding the global data layout for the `DM`. 4574b21d0597SMatthew G Knepley 4575b21d0597SMatthew G Knepley Input Parameters: 4576bb7acecfSBarry Smith + dm - The `DM` 45775080bbdbSMatthew G Knepley - section - The PetscSection, or NULL 4578b21d0597SMatthew G Knepley 4579b21d0597SMatthew G Knepley Level: intermediate 4580b21d0597SMatthew G Knepley 4581bb7acecfSBarry Smith Note: 4582bb7acecfSBarry Smith Any existing `PetscSection` will be destroyed 4583b21d0597SMatthew G Knepley 4584db781477SPatrick Sanan .seealso: `DMGetGlobalSection()`, `DMSetLocalSection()` 4585b21d0597SMatthew G Knepley @*/ 4586d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetGlobalSection(DM dm, PetscSection section) 4587d71ae5a4SJacob Faibussowitsch { 4588b21d0597SMatthew G Knepley PetscFunctionBegin; 4589b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45905080bbdbSMatthew G Knepley if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 45919566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 45929566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 45931bb6d2a8SBarry Smith dm->globalSection = section; 4594497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 45959566063dSJacob Faibussowitsch if (section) PetscCall(DMDefaultSectionCheckConsistency_Internal(dm, dm->localSection, section)); 4596507e4973SMatthew G. Knepley #endif 4597b21d0597SMatthew G Knepley PetscFunctionReturn(0); 4598b21d0597SMatthew G Knepley } 4599b21d0597SMatthew G Knepley 460088ed4aceSMatthew G Knepley /*@ 4601bb7acecfSBarry Smith DMGetSectionSF - Get the `PetscSF` encoding the parallel dof overlap for the `DM`. If it has not been set, 4602bb7acecfSBarry Smith it is created from the default `PetscSection` layouts in the `DM`. 460388ed4aceSMatthew G Knepley 460488ed4aceSMatthew G Knepley Input Parameter: 4605bb7acecfSBarry Smith . dm - The `DM` 460688ed4aceSMatthew G Knepley 460788ed4aceSMatthew G Knepley Output Parameter: 4608bb7acecfSBarry Smith . sf - The `PetscSF` 460988ed4aceSMatthew G Knepley 461088ed4aceSMatthew G Knepley Level: intermediate 461188ed4aceSMatthew G Knepley 4612bb7acecfSBarry Smith Note: 4613bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 461488ed4aceSMatthew G Knepley 4615db781477SPatrick Sanan .seealso: `DMSetSectionSF()`, `DMCreateSectionSF()` 461688ed4aceSMatthew G Knepley @*/ 4617d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSectionSF(DM dm, PetscSF *sf) 4618d71ae5a4SJacob Faibussowitsch { 461988ed4aceSMatthew G Knepley PetscInt nroots; 462088ed4aceSMatthew G Knepley 462188ed4aceSMatthew G Knepley PetscFunctionBegin; 462288ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 462388ed4aceSMatthew G Knepley PetscValidPointer(sf, 2); 462448a46eb9SPierre Jolivet if (!dm->sectionSF) PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 46259566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sectionSF, &nroots, NULL, NULL, NULL)); 462688ed4aceSMatthew G Knepley if (nroots < 0) { 462788ed4aceSMatthew G Knepley PetscSection section, gSection; 462888ed4aceSMatthew G Knepley 46299566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 463031ea6d37SMatthew G Knepley if (section) { 46319566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gSection)); 46329566063dSJacob Faibussowitsch PetscCall(DMCreateSectionSF(dm, section, gSection)); 463331ea6d37SMatthew G Knepley } else { 46340298fd71SBarry Smith *sf = NULL; 463531ea6d37SMatthew G Knepley PetscFunctionReturn(0); 463631ea6d37SMatthew G Knepley } 463788ed4aceSMatthew G Knepley } 46381bb6d2a8SBarry Smith *sf = dm->sectionSF; 463988ed4aceSMatthew G Knepley PetscFunctionReturn(0); 464088ed4aceSMatthew G Knepley } 464188ed4aceSMatthew G Knepley 464288ed4aceSMatthew G Knepley /*@ 4643bb7acecfSBarry Smith DMSetSectionSF - Set the `PetscSF` encoding the parallel dof overlap for the `DM` 464488ed4aceSMatthew G Knepley 464588ed4aceSMatthew G Knepley Input Parameters: 4646bb7acecfSBarry Smith + dm - The `DM` 4647bb7acecfSBarry Smith - sf - The `PetscSF` 464888ed4aceSMatthew G Knepley 464988ed4aceSMatthew G Knepley Level: intermediate 465088ed4aceSMatthew G Knepley 4651bb7acecfSBarry Smith Note: 4652bb7acecfSBarry Smith Any previous `PetscSF` is destroyed 465388ed4aceSMatthew G Knepley 4654db781477SPatrick Sanan .seealso: `DMGetSectionSF()`, `DMCreateSectionSF()` 465588ed4aceSMatthew G Knepley @*/ 4656d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSectionSF(DM dm, PetscSF sf) 4657d71ae5a4SJacob Faibussowitsch { 465888ed4aceSMatthew G Knepley PetscFunctionBegin; 465988ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4660b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 46619566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 46629566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sectionSF)); 46631bb6d2a8SBarry Smith dm->sectionSF = sf; 466488ed4aceSMatthew G Knepley PetscFunctionReturn(0); 466588ed4aceSMatthew G Knepley } 466688ed4aceSMatthew G Knepley 466788ed4aceSMatthew G Knepley /*@C 4668bb7acecfSBarry Smith DMCreateSectionSF - Create the `PetscSF` encoding the parallel dof overlap for the `DM` based upon the `PetscSection`s 466988ed4aceSMatthew G Knepley describing the data layout. 467088ed4aceSMatthew G Knepley 467188ed4aceSMatthew G Knepley Input Parameters: 4672bb7acecfSBarry Smith + dm - The `DM` 4673bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4674bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 467588ed4aceSMatthew G Knepley 46761bb6d2a8SBarry Smith Level: developer 46771bb6d2a8SBarry Smith 4678bb7acecfSBarry Smith Note: 4679bb7acecfSBarry Smith One usually uses `DMGetSectionSF()` to obtain the `PetscSF` 4680bb7acecfSBarry Smith 4681bb7acecfSBarry Smith Developer Note: 4682bb7acecfSBarry Smith Since this routine has for arguments the two sections from the `DM` and puts the resulting `PetscSF` 4683bb7acecfSBarry Smith directly into the `DM`, perhaps this function should not take the local and global sections as 4684bb7acecfSBarry Smith input and should just obtain them from the `DM`? 46851bb6d2a8SBarry Smith 4686db781477SPatrick Sanan .seealso: `DMGetSectionSF()`, `DMSetSectionSF()`, `DMGetLocalSection()`, `DMGetGlobalSection()` 468788ed4aceSMatthew G Knepley @*/ 4688d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSectionSF(DM dm, PetscSection localSection, PetscSection globalSection) 4689d71ae5a4SJacob Faibussowitsch { 469088ed4aceSMatthew G Knepley PetscFunctionBegin; 469188ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46929566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphSection(dm->sectionSF, localSection, globalSection)); 469388ed4aceSMatthew G Knepley PetscFunctionReturn(0); 469488ed4aceSMatthew G Knepley } 4695af122d2aSMatthew G Knepley 4696b21d0597SMatthew G Knepley /*@ 4697bb7acecfSBarry Smith DMGetPointSF - Get the `PetscSF` encoding the parallel section point overlap for the `DM`. 4698bb7acecfSBarry Smith 4699bb7acecfSBarry Smith Not collective but the resulting `PetscSF` is collective 4700b21d0597SMatthew G Knepley 4701b21d0597SMatthew G Knepley Input Parameter: 4702bb7acecfSBarry Smith . dm - The `DM` 4703b21d0597SMatthew G Knepley 4704b21d0597SMatthew G Knepley Output Parameter: 4705bb7acecfSBarry Smith . sf - The `PetscSF` 4706b21d0597SMatthew G Knepley 4707b21d0597SMatthew G Knepley Level: intermediate 4708b21d0597SMatthew G Knepley 4709bb7acecfSBarry Smith Note: 4710bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 4711b21d0597SMatthew G Knepley 4712db781477SPatrick Sanan .seealso: `DMSetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4713b21d0597SMatthew G Knepley @*/ 4714d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetPointSF(DM dm, PetscSF *sf) 4715d71ae5a4SJacob Faibussowitsch { 4716b21d0597SMatthew G Knepley PetscFunctionBegin; 4717b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4718b21d0597SMatthew G Knepley PetscValidPointer(sf, 2); 4719b21d0597SMatthew G Knepley *sf = dm->sf; 4720b21d0597SMatthew G Knepley PetscFunctionReturn(0); 4721b21d0597SMatthew G Knepley } 4722b21d0597SMatthew G Knepley 4723057b4bcdSMatthew G Knepley /*@ 4724bb7acecfSBarry Smith DMSetPointSF - Set the `PetscSF` encoding the parallel section point overlap for the `DM`. 4725bb7acecfSBarry Smith 4726bb7acecfSBarry Smith Collective on dm 4727057b4bcdSMatthew G Knepley 4728057b4bcdSMatthew G Knepley Input Parameters: 4729bb7acecfSBarry Smith + dm - The `DM` 4730bb7acecfSBarry Smith - sf - The` PetscSF` 4731057b4bcdSMatthew G Knepley 4732057b4bcdSMatthew G Knepley Level: intermediate 4733057b4bcdSMatthew G Knepley 4734db781477SPatrick Sanan .seealso: `DMGetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4735057b4bcdSMatthew G Knepley @*/ 4736d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetPointSF(DM dm, PetscSF sf) 4737d71ae5a4SJacob Faibussowitsch { 4738057b4bcdSMatthew G Knepley PetscFunctionBegin; 4739057b4bcdSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4740b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 47419566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 47429566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sf)); 4743057b4bcdSMatthew G Knepley dm->sf = sf; 4744057b4bcdSMatthew G Knepley PetscFunctionReturn(0); 4745057b4bcdSMatthew G Knepley } 4746057b4bcdSMatthew G Knepley 47474f37162bSMatthew G. Knepley /*@ 4748bb7acecfSBarry Smith DMGetNaturalSF - Get the `PetscSF` encoding the map back to the original mesh ordering 47494f37162bSMatthew G. Knepley 47504f37162bSMatthew G. Knepley Input Parameter: 4751bb7acecfSBarry Smith . dm - The `DM` 47524f37162bSMatthew G. Knepley 47534f37162bSMatthew G. Knepley Output Parameter: 4754bb7acecfSBarry Smith . sf - The `PetscSF` 47554f37162bSMatthew G. Knepley 47564f37162bSMatthew G. Knepley Level: intermediate 47574f37162bSMatthew G. Knepley 4758bb7acecfSBarry Smith Note: 4759bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 47604f37162bSMatthew G. Knepley 4761db781477SPatrick Sanan .seealso: `DMSetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 47624f37162bSMatthew G. Knepley @*/ 4763d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNaturalSF(DM dm, PetscSF *sf) 4764d71ae5a4SJacob Faibussowitsch { 47654f37162bSMatthew G. Knepley PetscFunctionBegin; 47664f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47674f37162bSMatthew G. Knepley PetscValidPointer(sf, 2); 47684f37162bSMatthew G. Knepley *sf = dm->sfNatural; 47694f37162bSMatthew G. Knepley PetscFunctionReturn(0); 47704f37162bSMatthew G. Knepley } 47714f37162bSMatthew G. Knepley 47724f37162bSMatthew G. Knepley /*@ 47734f37162bSMatthew G. Knepley DMSetNaturalSF - Set the PetscSF encoding the map back to the original mesh ordering 47744f37162bSMatthew G. Knepley 47754f37162bSMatthew G. Knepley Input Parameters: 47764f37162bSMatthew G. Knepley + dm - The DM 47774f37162bSMatthew G. Knepley - sf - The PetscSF 47784f37162bSMatthew G. Knepley 47794f37162bSMatthew G. Knepley Level: intermediate 47804f37162bSMatthew G. Knepley 4781db781477SPatrick Sanan .seealso: `DMGetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 47824f37162bSMatthew G. Knepley @*/ 4783d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNaturalSF(DM dm, PetscSF sf) 4784d71ae5a4SJacob Faibussowitsch { 47854f37162bSMatthew G. Knepley PetscFunctionBegin; 47864f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47874f37162bSMatthew G. Knepley if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 47889566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 47899566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sfNatural)); 47904f37162bSMatthew G. Knepley dm->sfNatural = sf; 47914f37162bSMatthew G. Knepley PetscFunctionReturn(0); 47924f37162bSMatthew G. Knepley } 47934f37162bSMatthew G. Knepley 4794d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetDefaultAdjacency_Private(DM dm, PetscInt f, PetscObject disc) 4795d71ae5a4SJacob Faibussowitsch { 479634aa8a36SMatthew G. Knepley PetscClassId id; 479734aa8a36SMatthew G. Knepley 479834aa8a36SMatthew G. Knepley PetscFunctionBegin; 47999566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 480034aa8a36SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 48019566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 480234aa8a36SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 48039566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_TRUE, PETSC_FALSE)); 480417c1d62eSMatthew G. Knepley } else { 48059566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 480634aa8a36SMatthew G. Knepley } 480734aa8a36SMatthew G. Knepley PetscFunctionReturn(0); 480834aa8a36SMatthew G. Knepley } 480934aa8a36SMatthew G. Knepley 4810d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFieldEnlarge_Static(DM dm, PetscInt NfNew) 4811d71ae5a4SJacob Faibussowitsch { 481244a7f3ddSMatthew G. Knepley RegionField *tmpr; 481344a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf, f; 481444a7f3ddSMatthew G. Knepley 481544a7f3ddSMatthew G. Knepley PetscFunctionBegin; 481644a7f3ddSMatthew G. Knepley if (Nf >= NfNew) PetscFunctionReturn(0); 48179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NfNew, &tmpr)); 481844a7f3ddSMatthew G. Knepley for (f = 0; f < Nf; ++f) tmpr[f] = dm->fields[f]; 48199371c9d4SSatish Balay for (f = Nf; f < NfNew; ++f) { 48209371c9d4SSatish Balay tmpr[f].disc = NULL; 48219371c9d4SSatish Balay tmpr[f].label = NULL; 48229371c9d4SSatish Balay tmpr[f].avoidTensor = PETSC_FALSE; 48239371c9d4SSatish Balay } 48249566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 482544a7f3ddSMatthew G. Knepley dm->Nf = NfNew; 482644a7f3ddSMatthew G. Knepley dm->fields = tmpr; 482744a7f3ddSMatthew G. Knepley PetscFunctionReturn(0); 482844a7f3ddSMatthew G. Knepley } 482944a7f3ddSMatthew G. Knepley 483044a7f3ddSMatthew G. Knepley /*@ 483144a7f3ddSMatthew G. Knepley DMClearFields - Remove all fields from the DM 483244a7f3ddSMatthew G. Knepley 4833d083f849SBarry Smith Logically collective on dm 483444a7f3ddSMatthew G. Knepley 483544a7f3ddSMatthew G. Knepley Input Parameter: 483644a7f3ddSMatthew G. Knepley . dm - The DM 483744a7f3ddSMatthew G. Knepley 483844a7f3ddSMatthew G. Knepley Level: intermediate 483944a7f3ddSMatthew G. Knepley 4840db781477SPatrick Sanan .seealso: `DMGetNumFields()`, `DMSetNumFields()`, `DMSetField()` 484144a7f3ddSMatthew G. Knepley @*/ 4842d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearFields(DM dm) 4843d71ae5a4SJacob Faibussowitsch { 484444a7f3ddSMatthew G. Knepley PetscInt f; 484544a7f3ddSMatthew G. Knepley 484644a7f3ddSMatthew G. Knepley PetscFunctionBegin; 484744a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 484844a7f3ddSMatthew G. Knepley for (f = 0; f < dm->Nf; ++f) { 48499566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 48509566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 485144a7f3ddSMatthew G. Knepley } 48529566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 485344a7f3ddSMatthew G. Knepley dm->fields = NULL; 485444a7f3ddSMatthew G. Knepley dm->Nf = 0; 485544a7f3ddSMatthew G. Knepley PetscFunctionReturn(0); 485644a7f3ddSMatthew G. Knepley } 485744a7f3ddSMatthew G. Knepley 4858689b5837SMatthew G. Knepley /*@ 4859689b5837SMatthew G. Knepley DMGetNumFields - Get the number of fields in the DM 4860689b5837SMatthew G. Knepley 4861689b5837SMatthew G. Knepley Not collective 4862689b5837SMatthew G. Knepley 4863689b5837SMatthew G. Knepley Input Parameter: 4864689b5837SMatthew G. Knepley . dm - The DM 4865689b5837SMatthew G. Knepley 4866689b5837SMatthew G. Knepley Output Parameter: 4867689b5837SMatthew G. Knepley . Nf - The number of fields 4868689b5837SMatthew G. Knepley 4869689b5837SMatthew G. Knepley Level: intermediate 4870689b5837SMatthew G. Knepley 4871db781477SPatrick Sanan .seealso: `DMSetNumFields()`, `DMSetField()` 4872689b5837SMatthew G. Knepley @*/ 4873d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumFields(DM dm, PetscInt *numFields) 4874d71ae5a4SJacob Faibussowitsch { 48750f21e855SMatthew G. Knepley PetscFunctionBegin; 48760f21e855SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4877534a8f05SLisandro Dalcin PetscValidIntPointer(numFields, 2); 487844a7f3ddSMatthew G. Knepley *numFields = dm->Nf; 4879af122d2aSMatthew G Knepley PetscFunctionReturn(0); 4880af122d2aSMatthew G Knepley } 4881af122d2aSMatthew G Knepley 4882689b5837SMatthew G. Knepley /*@ 4883689b5837SMatthew G. Knepley DMSetNumFields - Set the number of fields in the DM 4884689b5837SMatthew G. Knepley 4885d083f849SBarry Smith Logically collective on dm 4886689b5837SMatthew G. Knepley 4887689b5837SMatthew G. Knepley Input Parameters: 4888689b5837SMatthew G. Knepley + dm - The DM 4889689b5837SMatthew G. Knepley - Nf - The number of fields 4890689b5837SMatthew G. Knepley 4891689b5837SMatthew G. Knepley Level: intermediate 4892689b5837SMatthew G. Knepley 4893db781477SPatrick Sanan .seealso: `DMGetNumFields()`, `DMSetField()` 4894689b5837SMatthew G. Knepley @*/ 4895d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNumFields(DM dm, PetscInt numFields) 4896d71ae5a4SJacob Faibussowitsch { 48970f21e855SMatthew G. Knepley PetscInt Nf, f; 4898af122d2aSMatthew G Knepley 4899af122d2aSMatthew G Knepley PetscFunctionBegin; 4900af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49019566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 49020f21e855SMatthew G. Knepley for (f = Nf; f < numFields; ++f) { 49030f21e855SMatthew G. Knepley PetscContainer obj; 49040f21e855SMatthew G. Knepley 49059566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject)dm), &obj)); 49069566063dSJacob Faibussowitsch PetscCall(DMAddField(dm, NULL, (PetscObject)obj)); 49079566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&obj)); 4908af122d2aSMatthew G Knepley } 4909af122d2aSMatthew G Knepley PetscFunctionReturn(0); 4910af122d2aSMatthew G Knepley } 4911af122d2aSMatthew G Knepley 4912c1929be8SMatthew G. Knepley /*@ 4913bb7acecfSBarry Smith DMGetField - Return the `DMLabel` and discretization object for a given `DM` field 4914c1929be8SMatthew G. Knepley 4915c1929be8SMatthew G. Knepley Not collective 4916c1929be8SMatthew G. Knepley 4917c1929be8SMatthew G. Knepley Input Parameters: 4918bb7acecfSBarry Smith + dm - The `DM` 4919c1929be8SMatthew G. Knepley - f - The field number 4920c1929be8SMatthew G. Knepley 492144a7f3ddSMatthew G. Knepley Output Parameters: 4922bb7acecfSBarry Smith + label - The label indicating the support of the field, or NULL for the entire mesh (pass in NULL if not needed) 4923bb7acecfSBarry Smith - disc - The discretization object (pass in NULL if not needed) 4924c1929be8SMatthew G. Knepley 492544a7f3ddSMatthew G. Knepley Level: intermediate 4926c1929be8SMatthew G. Knepley 4927db781477SPatrick Sanan .seealso: `DMAddField()`, `DMSetField()` 4928c1929be8SMatthew G. Knepley @*/ 4929d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetField(DM dm, PetscInt f, DMLabel *label, PetscObject *disc) 4930d71ae5a4SJacob Faibussowitsch { 4931af122d2aSMatthew G Knepley PetscFunctionBegin; 4932af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4933bb7acecfSBarry Smith PetscValidPointer(disc, 4); 49347a8be351SBarry Smith PetscCheck((f >= 0) && (f < dm->Nf), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, dm->Nf); 493544a7f3ddSMatthew G. Knepley if (label) *label = dm->fields[f].label; 4936bb7acecfSBarry Smith if (disc) *disc = dm->fields[f].disc; 4937decb47aaSMatthew G. Knepley PetscFunctionReturn(0); 4938decb47aaSMatthew G. Knepley } 4939decb47aaSMatthew G. Knepley 4940083401c6SMatthew G. Knepley /* Does not clear the DS */ 4941d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField_Internal(DM dm, PetscInt f, DMLabel label, PetscObject disc) 4942d71ae5a4SJacob Faibussowitsch { 4943083401c6SMatthew G. Knepley PetscFunctionBegin; 49449566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, f + 1)); 49459566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 49469566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 4947083401c6SMatthew G. Knepley dm->fields[f].label = label; 4948bb7acecfSBarry Smith dm->fields[f].disc = disc; 49499566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 4950bb7acecfSBarry Smith PetscCall(PetscObjectReference((PetscObject)disc)); 4951083401c6SMatthew G. Knepley PetscFunctionReturn(0); 4952083401c6SMatthew G. Knepley } 4953083401c6SMatthew G. Knepley 4954c1929be8SMatthew G. Knepley /*@ 4955bb7acecfSBarry Smith DMSetField - Set the discretization object for a given `DM` field. Usually one would call `DMAddField()` which automatically handles 4956bb7acecfSBarry Smith the field numbering. 4957c1929be8SMatthew G. Knepley 4958d083f849SBarry Smith Logically collective on dm 4959c1929be8SMatthew G. Knepley 4960c1929be8SMatthew G. Knepley Input Parameters: 4961bb7acecfSBarry Smith + dm - The `DM` 4962c1929be8SMatthew G. Knepley . f - The field number 496344a7f3ddSMatthew G. Knepley . label - The label indicating the support of the field, or NULL for the entire mesh 4964bb7acecfSBarry Smith - disc - The discretization object 4965c1929be8SMatthew G. Knepley 496644a7f3ddSMatthew G. Knepley Level: intermediate 4967c1929be8SMatthew G. Knepley 4968db781477SPatrick Sanan .seealso: `DMAddField()`, `DMGetField()` 4969c1929be8SMatthew G. Knepley @*/ 4970d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField(DM dm, PetscInt f, DMLabel label, PetscObject disc) 4971d71ae5a4SJacob Faibussowitsch { 4972decb47aaSMatthew G. Knepley PetscFunctionBegin; 4973decb47aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4974e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 4975bb7acecfSBarry Smith PetscValidHeader(disc, 4); 49767a8be351SBarry Smith PetscCheck(f >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be non-negative", f); 4977bb7acecfSBarry Smith PetscCall(DMSetField_Internal(dm, f, label, disc)); 4978bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, f, disc)); 49799566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 498044a7f3ddSMatthew G. Knepley PetscFunctionReturn(0); 498144a7f3ddSMatthew G. Knepley } 498244a7f3ddSMatthew G. Knepley 498344a7f3ddSMatthew G. Knepley /*@ 4984bb7acecfSBarry Smith DMAddField - Add a field to a `DM` object. A field is a function space defined by of a set of discretization points (geometric entities) 4985bb7acecfSBarry Smith and a discretization object that defines the function space associated with those points. 498644a7f3ddSMatthew G. Knepley 4987d083f849SBarry Smith Logically collective on dm 498844a7f3ddSMatthew G. Knepley 498944a7f3ddSMatthew G. Knepley Input Parameters: 4990bb7acecfSBarry Smith + dm - The `DM` 499144a7f3ddSMatthew G. Knepley . label - The label indicating the support of the field, or NULL for the entire mesh 4992bb7acecfSBarry Smith - disc - The discretization object 499344a7f3ddSMatthew G. Knepley 499444a7f3ddSMatthew G. Knepley Level: intermediate 499544a7f3ddSMatthew G. Knepley 4996bb7acecfSBarry Smith Notes: 4997bb7acecfSBarry Smith The label already exists or will be added to the `DM` with `DMSetLabel()`. 4998bb7acecfSBarry Smith 4999bb7acecfSBarry Smith For example, a piecewise continous pressure field can be defined by coefficients at the cell centers of a mesh and piecewise constant functions 5000bb7acecfSBarry Smith within each cell. Thus a specific function in the space is defined by the combination of a `Vec` containing the coefficients, a `DM` defining the 5001bb7acecfSBarry Smith geometry entities, a `DMLabel` indicating a subset of those geometric entities, and a discretization object, such as a `PetscFE`. 5002bb7acecfSBarry Smith 5003bb7acecfSBarry Smith .seealso: `DMSetLabel()`, `DMSetField()`, `DMGetField()`, `PetscFE` 500444a7f3ddSMatthew G. Knepley @*/ 5005d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddField(DM dm, DMLabel label, PetscObject disc) 5006d71ae5a4SJacob Faibussowitsch { 500744a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf; 500844a7f3ddSMatthew G. Knepley 500944a7f3ddSMatthew G. Knepley PetscFunctionBegin; 501044a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5011064a246eSJacob Faibussowitsch if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 5012bb7acecfSBarry Smith PetscValidHeader(disc, 3); 50139566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, Nf + 1)); 501444a7f3ddSMatthew G. Knepley dm->fields[Nf].label = label; 5015bb7acecfSBarry Smith dm->fields[Nf].disc = disc; 50169566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 5017bb7acecfSBarry Smith PetscCall(PetscObjectReference((PetscObject)disc)); 5018bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, Nf, disc)); 50199566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 5020af122d2aSMatthew G Knepley PetscFunctionReturn(0); 5021af122d2aSMatthew G Knepley } 50226636e97aSMatthew G Knepley 5023e5e52638SMatthew G. Knepley /*@ 5024e0b68406SMatthew Knepley DMSetFieldAvoidTensor - Set flag to avoid defining the field on tensor cells 5025e0b68406SMatthew Knepley 5026e0b68406SMatthew Knepley Logically collective on dm 5027e0b68406SMatthew Knepley 5028e0b68406SMatthew Knepley Input Parameters: 5029bb7acecfSBarry Smith + dm - The `DM` 5030e0b68406SMatthew Knepley . f - The field index 5031bb7acecfSBarry Smith - avoidTensor - `PETSC_TRUE` to skip defining the field on tensor cells 5032e0b68406SMatthew Knepley 5033e0b68406SMatthew Knepley Level: intermediate 5034e0b68406SMatthew Knepley 5035db781477SPatrick Sanan .seealso: `DMGetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()` 5036e0b68406SMatthew Knepley @*/ 5037d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFieldAvoidTensor(DM dm, PetscInt f, PetscBool avoidTensor) 5038d71ae5a4SJacob Faibussowitsch { 5039e0b68406SMatthew Knepley PetscFunctionBegin; 504063a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5041e0b68406SMatthew Knepley dm->fields[f].avoidTensor = avoidTensor; 5042e0b68406SMatthew Knepley PetscFunctionReturn(0); 5043e0b68406SMatthew Knepley } 5044e0b68406SMatthew Knepley 5045e0b68406SMatthew Knepley /*@ 5046e0b68406SMatthew Knepley DMGetFieldAvoidTensor - Get flag to avoid defining the field on tensor cells 5047e0b68406SMatthew Knepley 5048bb7acecfSBarry Smith Not collective 5049e0b68406SMatthew Knepley 5050e0b68406SMatthew Knepley Input Parameters: 5051bb7acecfSBarry Smith + dm - The `DM` 5052e0b68406SMatthew Knepley - f - The field index 5053e0b68406SMatthew Knepley 5054e0b68406SMatthew Knepley Output Parameter: 5055e0b68406SMatthew Knepley . avoidTensor - The flag to avoid defining the field on tensor cells 5056e0b68406SMatthew Knepley 5057e0b68406SMatthew Knepley Level: intermediate 5058e0b68406SMatthew Knepley 5059bb7acecfSBarry Smith .seealso: `DMAddField()`, `DMSetField()`, `DMGetField()`, `DMSetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()` 5060e0b68406SMatthew Knepley @*/ 5061d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFieldAvoidTensor(DM dm, PetscInt f, PetscBool *avoidTensor) 5062d71ae5a4SJacob Faibussowitsch { 5063e0b68406SMatthew Knepley PetscFunctionBegin; 506463a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5065e0b68406SMatthew Knepley *avoidTensor = dm->fields[f].avoidTensor; 5066e0b68406SMatthew Knepley PetscFunctionReturn(0); 5067e0b68406SMatthew Knepley } 5068e0b68406SMatthew Knepley 5069e0b68406SMatthew Knepley /*@ 5070bb7acecfSBarry Smith DMCopyFields - Copy the discretizations for the `DM` into another `DM` 5071e5e52638SMatthew G. Knepley 5072d083f849SBarry Smith Collective on dm 5073e5e52638SMatthew G. Knepley 5074e5e52638SMatthew G. Knepley Input Parameter: 5075bb7acecfSBarry Smith . dm - The `DM` 5076e5e52638SMatthew G. Knepley 5077e5e52638SMatthew G. Knepley Output Parameter: 5078bb7acecfSBarry Smith . newdm - The `DM` 5079e5e52638SMatthew G. Knepley 5080e5e52638SMatthew G. Knepley Level: advanced 5081e5e52638SMatthew G. Knepley 5082db781477SPatrick Sanan .seealso: `DMGetField()`, `DMSetField()`, `DMAddField()`, `DMCopyDS()`, `DMGetDS()`, `DMGetCellDS()` 5083e5e52638SMatthew G. Knepley @*/ 5084d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyFields(DM dm, DM newdm) 5085d71ae5a4SJacob Faibussowitsch { 5086e5e52638SMatthew G. Knepley PetscInt Nf, f; 5087e5e52638SMatthew G. Knepley 5088e5e52638SMatthew G. Knepley PetscFunctionBegin; 5089e5e52638SMatthew G. Knepley if (dm == newdm) PetscFunctionReturn(0); 50909566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 50919566063dSJacob Faibussowitsch PetscCall(DMClearFields(newdm)); 5092e5e52638SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5093e5e52638SMatthew G. Knepley DMLabel label; 5094e5e52638SMatthew G. Knepley PetscObject field; 509534aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 5096e5e52638SMatthew G. Knepley 50979566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, &label, &field)); 50989566063dSJacob Faibussowitsch PetscCall(DMSetField(newdm, f, label, field)); 50999566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, f, &useCone, &useClosure)); 51009566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(newdm, f, useCone, useClosure)); 510134aa8a36SMatthew G. Knepley } 510234aa8a36SMatthew G. Knepley PetscFunctionReturn(0); 510334aa8a36SMatthew G. Knepley } 510434aa8a36SMatthew G. Knepley 510534aa8a36SMatthew G. Knepley /*@ 510634aa8a36SMatthew G. Knepley DMGetAdjacency - Returns the flags for determining variable influence 510734aa8a36SMatthew G. Knepley 510834aa8a36SMatthew G. Knepley Not collective 510934aa8a36SMatthew G. Knepley 511034aa8a36SMatthew G. Knepley Input Parameters: 511134aa8a36SMatthew G. Knepley + dm - The DM object 511234aa8a36SMatthew G. Knepley - f - The field number, or PETSC_DEFAULT for the default adjacency 511334aa8a36SMatthew G. Knepley 5114d8d19677SJose E. Roman Output Parameters: 511534aa8a36SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 511634aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 511734aa8a36SMatthew G. Knepley 511834aa8a36SMatthew G. Knepley Notes: 511934aa8a36SMatthew G. Knepley $ FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 512034aa8a36SMatthew G. Knepley $ FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 512134aa8a36SMatthew G. Knepley $ FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 5122979e053dSMatthew G. Knepley Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 512334aa8a36SMatthew G. Knepley 512434aa8a36SMatthew G. Knepley Level: developer 512534aa8a36SMatthew G. Knepley 5126db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMGetField()`, `DMSetField()` 512734aa8a36SMatthew G. Knepley @*/ 5128d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAdjacency(DM dm, PetscInt f, PetscBool *useCone, PetscBool *useClosure) 5129d71ae5a4SJacob Faibussowitsch { 513034aa8a36SMatthew G. Knepley PetscFunctionBegin; 513134aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5132534a8f05SLisandro Dalcin if (useCone) PetscValidBoolPointer(useCone, 3); 5133534a8f05SLisandro Dalcin if (useClosure) PetscValidBoolPointer(useClosure, 4); 513434aa8a36SMatthew G. Knepley if (f < 0) { 513534aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->adjacency[0]; 513634aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->adjacency[1]; 513734aa8a36SMatthew G. Knepley } else { 513834aa8a36SMatthew G. Knepley PetscInt Nf; 513934aa8a36SMatthew G. Knepley 51409566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 51417a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 514234aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->fields[f].adjacency[0]; 514334aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->fields[f].adjacency[1]; 514434aa8a36SMatthew G. Knepley } 514534aa8a36SMatthew G. Knepley PetscFunctionReturn(0); 514634aa8a36SMatthew G. Knepley } 514734aa8a36SMatthew G. Knepley 514834aa8a36SMatthew G. Knepley /*@ 514934aa8a36SMatthew G. Knepley DMSetAdjacency - Set the flags for determining variable influence 515034aa8a36SMatthew G. Knepley 515134aa8a36SMatthew G. Knepley Not collective 515234aa8a36SMatthew G. Knepley 515334aa8a36SMatthew G. Knepley Input Parameters: 515434aa8a36SMatthew G. Knepley + dm - The DM object 515534aa8a36SMatthew G. Knepley . f - The field number 515634aa8a36SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 515734aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 515834aa8a36SMatthew G. Knepley 515934aa8a36SMatthew G. Knepley Notes: 516034aa8a36SMatthew G. Knepley $ FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 516134aa8a36SMatthew G. Knepley $ FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 516234aa8a36SMatthew G. Knepley $ FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 5163979e053dSMatthew G. Knepley Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 516434aa8a36SMatthew G. Knepley 516534aa8a36SMatthew G. Knepley Level: developer 516634aa8a36SMatthew G. Knepley 5167db781477SPatrick Sanan .seealso: `DMGetAdjacency()`, `DMGetField()`, `DMSetField()` 516834aa8a36SMatthew G. Knepley @*/ 5169d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAdjacency(DM dm, PetscInt f, PetscBool useCone, PetscBool useClosure) 5170d71ae5a4SJacob Faibussowitsch { 517134aa8a36SMatthew G. Knepley PetscFunctionBegin; 517234aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 517334aa8a36SMatthew G. Knepley if (f < 0) { 517434aa8a36SMatthew G. Knepley dm->adjacency[0] = useCone; 517534aa8a36SMatthew G. Knepley dm->adjacency[1] = useClosure; 517634aa8a36SMatthew G. Knepley } else { 517734aa8a36SMatthew G. Knepley PetscInt Nf; 517834aa8a36SMatthew G. Knepley 51799566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 51807a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 518134aa8a36SMatthew G. Knepley dm->fields[f].adjacency[0] = useCone; 518234aa8a36SMatthew G. Knepley dm->fields[f].adjacency[1] = useClosure; 5183e5e52638SMatthew G. Knepley } 5184e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5185e5e52638SMatthew G. Knepley } 5186e5e52638SMatthew G. Knepley 5187b0441da4SMatthew G. Knepley /*@ 5188b0441da4SMatthew G. Knepley DMGetBasicAdjacency - Returns the flags for determining variable influence, using either the default or field 0 if it is defined 5189b0441da4SMatthew G. Knepley 5190b0441da4SMatthew G. Knepley Not collective 5191b0441da4SMatthew G. Knepley 5192f899ff85SJose E. Roman Input Parameter: 5193b0441da4SMatthew G. Knepley . dm - The DM object 5194b0441da4SMatthew G. Knepley 5195d8d19677SJose E. Roman Output Parameters: 5196b0441da4SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 5197b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5198b0441da4SMatthew G. Knepley 5199b0441da4SMatthew G. Knepley Notes: 5200b0441da4SMatthew G. Knepley $ FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 5201b0441da4SMatthew G. Knepley $ FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 5202b0441da4SMatthew G. Knepley $ FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 5203b0441da4SMatthew G. Knepley 5204b0441da4SMatthew G. Knepley Level: developer 5205b0441da4SMatthew G. Knepley 5206db781477SPatrick Sanan .seealso: `DMSetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5207b0441da4SMatthew G. Knepley @*/ 5208d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasicAdjacency(DM dm, PetscBool *useCone, PetscBool *useClosure) 5209d71ae5a4SJacob Faibussowitsch { 5210b0441da4SMatthew G. Knepley PetscInt Nf; 5211b0441da4SMatthew G. Knepley 5212b0441da4SMatthew G. Knepley PetscFunctionBegin; 5213b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5214064a246eSJacob Faibussowitsch if (useCone) PetscValidBoolPointer(useCone, 2); 5215064a246eSJacob Faibussowitsch if (useClosure) PetscValidBoolPointer(useClosure, 3); 52169566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5217b0441da4SMatthew G. Knepley if (!Nf) { 52189566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5219b0441da4SMatthew G. Knepley } else { 52209566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, 0, useCone, useClosure)); 5221b0441da4SMatthew G. Knepley } 5222b0441da4SMatthew G. Knepley PetscFunctionReturn(0); 5223b0441da4SMatthew G. Knepley } 5224b0441da4SMatthew G. Knepley 5225b0441da4SMatthew G. Knepley /*@ 5226b0441da4SMatthew G. Knepley DMSetBasicAdjacency - Set the flags for determining variable influence, using either the default or field 0 if it is defined 5227b0441da4SMatthew G. Knepley 5228b0441da4SMatthew G. Knepley Not collective 5229b0441da4SMatthew G. Knepley 5230b0441da4SMatthew G. Knepley Input Parameters: 5231b0441da4SMatthew G. Knepley + dm - The DM object 5232b0441da4SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 5233b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5234b0441da4SMatthew G. Knepley 5235b0441da4SMatthew G. Knepley Notes: 5236b0441da4SMatthew G. Knepley $ FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 5237b0441da4SMatthew G. Knepley $ FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 5238b0441da4SMatthew G. Knepley $ FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 5239b0441da4SMatthew G. Knepley 5240b0441da4SMatthew G. Knepley Level: developer 5241b0441da4SMatthew G. Knepley 5242db781477SPatrick Sanan .seealso: `DMGetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5243b0441da4SMatthew G. Knepley @*/ 5244d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetBasicAdjacency(DM dm, PetscBool useCone, PetscBool useClosure) 5245d71ae5a4SJacob Faibussowitsch { 5246b0441da4SMatthew G. Knepley PetscInt Nf; 5247b0441da4SMatthew G. Knepley 5248b0441da4SMatthew G. Knepley PetscFunctionBegin; 5249b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 52509566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5251b0441da4SMatthew G. Knepley if (!Nf) { 52529566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5253b0441da4SMatthew G. Knepley } else { 52549566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, 0, useCone, useClosure)); 5255e5e52638SMatthew G. Knepley } 5256e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5257e5e52638SMatthew G. Knepley } 5258e5e52638SMatthew G. Knepley 5259d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompleteBCLabels_Internal(DM dm) 5260d71ae5a4SJacob Faibussowitsch { 5261799db056SMatthew G. Knepley DM plex; 5262799db056SMatthew G. Knepley DMLabel *labels, *glabels; 5263799db056SMatthew G. Knepley const char **names; 5264799db056SMatthew G. Knepley char *sendNames, *recvNames; 5265799db056SMatthew G. Knepley PetscInt Nds, s, maxLabels = 0, maxLen = 0, gmaxLen, Nl = 0, gNl, l, gl, m; 5266799db056SMatthew G. Knepley size_t len; 5267799db056SMatthew G. Knepley MPI_Comm comm; 5268799db056SMatthew G. Knepley PetscMPIInt rank, size, p, *counts, *displs; 5269783e2ec8SMatthew G. Knepley 5270783e2ec8SMatthew G. Knepley PetscFunctionBegin; 5271799db056SMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 5272799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(comm, &size)); 5273799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5274799db056SMatthew G. Knepley PetscCall(DMGetNumDS(dm, &Nds)); 5275799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5276799db056SMatthew G. Knepley PetscDS dsBC; 5277799db056SMatthew G. Knepley PetscInt numBd; 5278799db056SMatthew G. Knepley 5279799db056SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC)); 5280799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5281799db056SMatthew G. Knepley maxLabels += numBd; 5282799db056SMatthew G. Knepley } 5283799db056SMatthew G. Knepley PetscCall(PetscCalloc1(maxLabels, &labels)); 5284799db056SMatthew G. Knepley /* Get list of labels to be completed */ 5285799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5286799db056SMatthew G. Knepley PetscDS dsBC; 5287799db056SMatthew G. Knepley PetscInt numBd, bd; 5288799db056SMatthew G. Knepley 5289799db056SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC)); 5290799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5291799db056SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 5292799db056SMatthew G. Knepley DMLabel label; 5293799db056SMatthew G. Knepley PetscInt field; 5294799db056SMatthew G. Knepley PetscObject obj; 5295799db056SMatthew G. Knepley PetscClassId id; 5296799db056SMatthew G. Knepley 5297799db056SMatthew G. Knepley PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 52989566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 52999566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 5300799db056SMatthew G. Knepley if (!(id == PETSCFE_CLASSID) || !label) continue; 53019371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 53029371c9d4SSatish Balay if (labels[l] == label) break; 5303799db056SMatthew G. Knepley if (l == Nl) labels[Nl++] = label; 5304783e2ec8SMatthew G. Knepley } 5305799db056SMatthew G. Knepley } 5306799db056SMatthew G. Knepley /* Get label names */ 5307799db056SMatthew G. Knepley PetscCall(PetscMalloc1(Nl, &names)); 5308799db056SMatthew G. Knepley for (l = 0; l < Nl; ++l) PetscCall(PetscObjectGetName((PetscObject)labels[l], &names[l])); 53099371c9d4SSatish Balay for (l = 0; l < Nl; ++l) { 53109371c9d4SSatish Balay PetscCall(PetscStrlen(names[l], &len)); 53119371c9d4SSatish Balay maxLen = PetscMax(maxLen, (PetscInt)len + 2); 53129371c9d4SSatish Balay } 5313799db056SMatthew G. Knepley PetscCall(PetscFree(labels)); 5314799db056SMatthew G. Knepley PetscCallMPI(MPI_Allreduce(&maxLen, &gmaxLen, 1, MPIU_INT, MPI_MAX, comm)); 5315799db056SMatthew G. Knepley PetscCall(PetscCalloc1(Nl * gmaxLen, &sendNames)); 5316799db056SMatthew G. Knepley for (l = 0; l < Nl; ++l) PetscCall(PetscStrcpy(&sendNames[gmaxLen * l], names[l])); 5317799db056SMatthew G. Knepley PetscCall(PetscFree(names)); 5318799db056SMatthew G. Knepley /* Put all names on all processes */ 5319799db056SMatthew G. Knepley PetscCall(PetscCalloc2(size, &counts, size + 1, &displs)); 5320799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgather(&Nl, 1, MPI_INT, counts, 1, MPI_INT, comm)); 5321799db056SMatthew G. Knepley for (p = 0; p < size; ++p) displs[p + 1] = displs[p] + counts[p]; 5322799db056SMatthew G. Knepley gNl = displs[size]; 53239371c9d4SSatish Balay for (p = 0; p < size; ++p) { 53249371c9d4SSatish Balay counts[p] *= gmaxLen; 53259371c9d4SSatish Balay displs[p] *= gmaxLen; 53269371c9d4SSatish Balay } 5327799db056SMatthew G. Knepley PetscCall(PetscCalloc2(gNl * gmaxLen, &recvNames, gNl, &glabels)); 5328799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgatherv(sendNames, counts[rank], MPI_CHAR, recvNames, counts, displs, MPI_CHAR, comm)); 5329799db056SMatthew G. Knepley PetscCall(PetscFree2(counts, displs)); 5330799db056SMatthew G. Knepley PetscCall(PetscFree(sendNames)); 5331799db056SMatthew G. Knepley for (l = 0, gl = 0; l < gNl; ++l) { 5332799db056SMatthew G. Knepley PetscCall(DMGetLabel(dm, &recvNames[l * gmaxLen], &glabels[gl])); 5333799db056SMatthew G. Knepley PetscCheck(glabels[gl], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Label %s missing on rank %d", &recvNames[l * gmaxLen], rank); 53349371c9d4SSatish Balay for (m = 0; m < gl; ++m) 53359371c9d4SSatish Balay if (glabels[m] == glabels[gl]) continue; 53369566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 5337799db056SMatthew G. Knepley PetscCall(DMPlexLabelComplete(plex, glabels[gl])); 53389566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 5339799db056SMatthew G. Knepley ++gl; 5340783e2ec8SMatthew G. Knepley } 5341799db056SMatthew G. Knepley PetscCall(PetscFree2(recvNames, glabels)); 5342783e2ec8SMatthew G. Knepley PetscFunctionReturn(0); 5343783e2ec8SMatthew G. Knepley } 5344783e2ec8SMatthew G. Knepley 5345d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDSEnlarge_Static(DM dm, PetscInt NdsNew) 5346d71ae5a4SJacob Faibussowitsch { 5347e5e52638SMatthew G. Knepley DMSpace *tmpd; 5348e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5349e5e52638SMatthew G. Knepley 5350e5e52638SMatthew G. Knepley PetscFunctionBegin; 5351e5e52638SMatthew G. Knepley if (Nds >= NdsNew) PetscFunctionReturn(0); 53529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NdsNew, &tmpd)); 5353e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) tmpd[s] = dm->probs[s]; 53549371c9d4SSatish Balay for (s = Nds; s < NdsNew; ++s) { 53559371c9d4SSatish Balay tmpd[s].ds = NULL; 53569371c9d4SSatish Balay tmpd[s].label = NULL; 53579371c9d4SSatish Balay tmpd[s].fields = NULL; 53589371c9d4SSatish Balay } 53599566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5360e5e52638SMatthew G. Knepley dm->Nds = NdsNew; 5361e5e52638SMatthew G. Knepley dm->probs = tmpd; 5362e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5363e5e52638SMatthew G. Knepley } 5364e5e52638SMatthew G. Knepley 5365e5e52638SMatthew G. Knepley /*@ 5366e5e52638SMatthew G. Knepley DMGetNumDS - Get the number of discrete systems in the DM 5367e5e52638SMatthew G. Knepley 5368e5e52638SMatthew G. Knepley Not collective 5369e5e52638SMatthew G. Knepley 5370e5e52638SMatthew G. Knepley Input Parameter: 5371e5e52638SMatthew G. Knepley . dm - The DM 5372e5e52638SMatthew G. Knepley 5373e5e52638SMatthew G. Knepley Output Parameter: 5374e5e52638SMatthew G. Knepley . Nds - The number of PetscDS objects 5375e5e52638SMatthew G. Knepley 5376e5e52638SMatthew G. Knepley Level: intermediate 5377e5e52638SMatthew G. Knepley 5378db781477SPatrick Sanan .seealso: `DMGetDS()`, `DMGetCellDS()` 5379e5e52638SMatthew G. Knepley @*/ 5380d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumDS(DM dm, PetscInt *Nds) 5381d71ae5a4SJacob Faibussowitsch { 5382e5e52638SMatthew G. Knepley PetscFunctionBegin; 5383e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5384534a8f05SLisandro Dalcin PetscValidIntPointer(Nds, 2); 5385e5e52638SMatthew G. Knepley *Nds = dm->Nds; 5386e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5387e5e52638SMatthew G. Knepley } 5388e5e52638SMatthew G. Knepley 5389e5e52638SMatthew G. Knepley /*@ 5390e5e52638SMatthew G. Knepley DMClearDS - Remove all discrete systems from the DM 5391e5e52638SMatthew G. Knepley 5392d083f849SBarry Smith Logically collective on dm 5393e5e52638SMatthew G. Knepley 5394e5e52638SMatthew G. Knepley Input Parameter: 5395e5e52638SMatthew G. Knepley . dm - The DM 5396e5e52638SMatthew G. Knepley 5397e5e52638SMatthew G. Knepley Level: intermediate 5398e5e52638SMatthew G. Knepley 5399db781477SPatrick Sanan .seealso: `DMGetNumDS()`, `DMGetDS()`, `DMSetField()` 5400e5e52638SMatthew G. Knepley @*/ 5401d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearDS(DM dm) 5402d71ae5a4SJacob Faibussowitsch { 5403e5e52638SMatthew G. Knepley PetscInt s; 5404e5e52638SMatthew G. Knepley 5405e5e52638SMatthew G. Knepley PetscFunctionBegin; 5406e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5407e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 54089566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 54099566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[s].label)); 54109566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[s].fields)); 5411e5e52638SMatthew G. Knepley } 54129566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5413e5e52638SMatthew G. Knepley dm->probs = NULL; 5414e5e52638SMatthew G. Knepley dm->Nds = 0; 5415e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5416e5e52638SMatthew G. Knepley } 5417e5e52638SMatthew G. Knepley 5418e5e52638SMatthew G. Knepley /*@ 5419e5e52638SMatthew G. Knepley DMGetDS - Get the default PetscDS 5420e5e52638SMatthew G. Knepley 5421e5e52638SMatthew G. Knepley Not collective 5422e5e52638SMatthew G. Knepley 5423e5e52638SMatthew G. Knepley Input Parameter: 5424e5e52638SMatthew G. Knepley . dm - The DM 5425e5e52638SMatthew G. Knepley 5426e5e52638SMatthew G. Knepley Output Parameter: 5427e5e52638SMatthew G. Knepley . prob - The default PetscDS 5428e5e52638SMatthew G. Knepley 5429e5e52638SMatthew G. Knepley Level: intermediate 5430e5e52638SMatthew G. Knepley 5431db781477SPatrick Sanan .seealso: `DMGetCellDS()`, `DMGetRegionDS()` 5432e5e52638SMatthew G. Knepley @*/ 5433d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDS(DM dm, PetscDS *prob) 5434d71ae5a4SJacob Faibussowitsch { 5435e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5436e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5437e5e52638SMatthew G. Knepley PetscValidPointer(prob, 2); 5438b0143b4dSMatthew G. Knepley if (dm->Nds <= 0) { 5439b0143b4dSMatthew G. Knepley PetscDS ds; 5440b0143b4dSMatthew G. Knepley 54419566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 54429566063dSJacob Faibussowitsch PetscCall(DMSetRegionDS(dm, NULL, NULL, ds)); 54439566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 5444b0143b4dSMatthew G. Knepley } 5445b0143b4dSMatthew G. Knepley *prob = dm->probs[0].ds; 5446e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5447e5e52638SMatthew G. Knepley } 5448e5e52638SMatthew G. Knepley 5449e5e52638SMatthew G. Knepley /*@ 5450e5e52638SMatthew G. Knepley DMGetCellDS - Get the PetscDS defined on a given cell 5451e5e52638SMatthew G. Knepley 5452e5e52638SMatthew G. Knepley Not collective 5453e5e52638SMatthew G. Knepley 5454e5e52638SMatthew G. Knepley Input Parameters: 5455e5e52638SMatthew G. Knepley + dm - The DM 5456e5e52638SMatthew G. Knepley - point - Cell for the DS 5457e5e52638SMatthew G. Knepley 5458e5e52638SMatthew G. Knepley Output Parameter: 5459e5e52638SMatthew G. Knepley . prob - The PetscDS defined on the given cell 5460e5e52638SMatthew G. Knepley 5461e5e52638SMatthew G. Knepley Level: developer 5462e5e52638SMatthew G. Knepley 5463db781477SPatrick Sanan .seealso: `DMGetDS()`, `DMSetRegionDS()` 5464e5e52638SMatthew G. Knepley @*/ 5465d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCellDS(DM dm, PetscInt point, PetscDS *prob) 5466d71ae5a4SJacob Faibussowitsch { 5467e5e52638SMatthew G. Knepley PetscDS probDef = NULL; 5468e5e52638SMatthew G. Knepley PetscInt s; 5469e5e52638SMatthew G. Knepley 5470e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5471e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5472e5e52638SMatthew G. Knepley PetscValidPointer(prob, 3); 547363a3b9bcSJacob Faibussowitsch PetscCheck(point >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Mesh point cannot be negative: %" PetscInt_FMT, point); 5474e5e52638SMatthew G. Knepley *prob = NULL; 5475e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 5476e5e52638SMatthew G. Knepley PetscInt val; 5477e5e52638SMatthew G. Knepley 54789371c9d4SSatish Balay if (!dm->probs[s].label) { 54799371c9d4SSatish Balay probDef = dm->probs[s].ds; 54809371c9d4SSatish Balay } else { 54819566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(dm->probs[s].label, point, &val)); 54829371c9d4SSatish Balay if (val >= 0) { 54839371c9d4SSatish Balay *prob = dm->probs[s].ds; 54849371c9d4SSatish Balay break; 54859371c9d4SSatish Balay } 5486e5e52638SMatthew G. Knepley } 5487e5e52638SMatthew G. Knepley } 5488e5e52638SMatthew G. Knepley if (!*prob) *prob = probDef; 5489e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5490e5e52638SMatthew G. Knepley } 5491e5e52638SMatthew G. Knepley 5492e5e52638SMatthew G. Knepley /*@ 5493e5e52638SMatthew G. Knepley DMGetRegionDS - Get the PetscDS for a given mesh region, defined by a DMLabel 5494e5e52638SMatthew G. Knepley 5495e5e52638SMatthew G. Knepley Not collective 5496e5e52638SMatthew G. Knepley 5497e5e52638SMatthew G. Knepley Input Parameters: 5498e5e52638SMatthew G. Knepley + dm - The DM 5499e5e52638SMatthew G. Knepley - label - The DMLabel defining the mesh region, or NULL for the entire mesh 5500e5e52638SMatthew G. Knepley 5501b3cf3223SMatthew G. Knepley Output Parameters: 5502b3cf3223SMatthew G. Knepley + fields - The IS containing the DM field numbers for the fields in this DS, or NULL 5503b3cf3223SMatthew G. Knepley - prob - The PetscDS defined on the given region, or NULL 5504e5e52638SMatthew G. Knepley 5505154ca461SJed Brown Note: 5506154ca461SJed Brown If a non-NULL label is given, but there is no PetscDS on that specific label, 5507154ca461SJed Brown the PetscDS for the full domain (if present) is returned. Returns with 5508154ca461SJed Brown fields=NULL and prob=NULL if there is no PetscDS for the full domain. 5509e5e52638SMatthew G. Knepley 5510e5e52638SMatthew G. Knepley Level: advanced 5511e5e52638SMatthew G. Knepley 5512db781477SPatrick Sanan .seealso: `DMGetRegionNumDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5513e5e52638SMatthew G. Knepley @*/ 5514d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRegionDS(DM dm, DMLabel label, IS *fields, PetscDS *ds) 5515d71ae5a4SJacob Faibussowitsch { 5516e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5517e5e52638SMatthew G. Knepley 5518e5e52638SMatthew G. Knepley PetscFunctionBegin; 5519e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5520e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 55219371c9d4SSatish Balay if (fields) { 55229371c9d4SSatish Balay PetscValidPointer(fields, 3); 55239371c9d4SSatish Balay *fields = NULL; 55249371c9d4SSatish Balay } 55259371c9d4SSatish Balay if (ds) { 55269371c9d4SSatish Balay PetscValidPointer(ds, 4); 55279371c9d4SSatish Balay *ds = NULL; 55289371c9d4SSatish Balay } 5529e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5530154ca461SJed Brown if (dm->probs[s].label == label || !dm->probs[s].label) { 5531b3cf3223SMatthew G. Knepley if (fields) *fields = dm->probs[s].fields; 5532b3cf3223SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 5533154ca461SJed Brown if (dm->probs[s].label) PetscFunctionReturn(0); 5534b3cf3223SMatthew G. Knepley } 5535e5e52638SMatthew G. Knepley } 55362df9ee95SMatthew G. Knepley PetscFunctionReturn(0); 5537e5e52638SMatthew G. Knepley } 5538e5e52638SMatthew G. Knepley 5539e5e52638SMatthew G. Knepley /*@ 5540bb7acecfSBarry Smith DMSetRegionDS - Set the `PetscDS` for a given mesh region, defined by a `DMLabel` 5541083401c6SMatthew G. Knepley 5542083401c6SMatthew G. Knepley Collective on dm 5543083401c6SMatthew G. Knepley 5544083401c6SMatthew G. Knepley Input Parameters: 5545bb7acecfSBarry Smith + dm - The `DM` 5546bb7acecfSBarry Smith . label - The `DMLabel` defining the mesh region, or NULL for the entire mesh 5547bb7acecfSBarry Smith . fields - The IS containing the `DM` field numbers for the fields in this `PetscDS`, or NULL for all fields 5548bb7acecfSBarry Smith - prob - The `PetscDS` defined on the given region 5549083401c6SMatthew G. Knepley 5550bb7acecfSBarry Smith Note: 5551bb7acecfSBarry Smith If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`. If the `PetscDS` is replaced, 5552083401c6SMatthew G. Knepley the fields argument is ignored. 5553083401c6SMatthew G. Knepley 5554083401c6SMatthew G. Knepley Level: advanced 5555083401c6SMatthew G. Knepley 5556db781477SPatrick Sanan .seealso: `DMGetRegionDS()`, `DMSetRegionNumDS()`, `DMGetDS()`, `DMGetCellDS()` 5557083401c6SMatthew G. Knepley @*/ 5558d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRegionDS(DM dm, DMLabel label, IS fields, PetscDS ds) 5559d71ae5a4SJacob Faibussowitsch { 5560083401c6SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5561083401c6SMatthew G. Knepley 5562083401c6SMatthew G. Knepley PetscFunctionBegin; 5563083401c6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5564083401c6SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 5565064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 4); 5566083401c6SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5567083401c6SMatthew G. Knepley if (dm->probs[s].label == label) { 55689566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 5569083401c6SMatthew G. Knepley dm->probs[s].ds = ds; 5570083401c6SMatthew G. Knepley PetscFunctionReturn(0); 5571083401c6SMatthew G. Knepley } 5572083401c6SMatthew G. Knepley } 55739566063dSJacob Faibussowitsch PetscCall(DMDSEnlarge_Static(dm, Nds + 1)); 55749566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 55759566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 55769566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 5577083401c6SMatthew G. Knepley if (!label) { 5578083401c6SMatthew G. Knepley /* Put the NULL label at the front, so it is returned as the default */ 5579083401c6SMatthew G. Knepley for (s = Nds - 1; s >= 0; --s) dm->probs[s + 1] = dm->probs[s]; 5580083401c6SMatthew G. Knepley Nds = 0; 5581083401c6SMatthew G. Knepley } 5582083401c6SMatthew G. Knepley dm->probs[Nds].label = label; 5583083401c6SMatthew G. Knepley dm->probs[Nds].fields = fields; 5584083401c6SMatthew G. Knepley dm->probs[Nds].ds = ds; 5585083401c6SMatthew G. Knepley PetscFunctionReturn(0); 5586083401c6SMatthew G. Knepley } 5587083401c6SMatthew G. Knepley 5588083401c6SMatthew G. Knepley /*@ 5589e5e52638SMatthew G. Knepley DMGetRegionNumDS - Get the PetscDS for a given mesh region, defined by the region number 5590e5e52638SMatthew G. Knepley 5591e5e52638SMatthew G. Knepley Not collective 5592e5e52638SMatthew G. Knepley 5593e5e52638SMatthew G. Knepley Input Parameters: 5594e5e52638SMatthew G. Knepley + dm - The DM 5595e5e52638SMatthew G. Knepley - num - The region number, in [0, Nds) 5596e5e52638SMatthew G. Knepley 5597e5e52638SMatthew G. Knepley Output Parameters: 5598b3cf3223SMatthew G. Knepley + label - The region label, or NULL 5599b3cf3223SMatthew G. Knepley . fields - The IS containing the DM field numbers for the fields in this DS, or NULL 5600083401c6SMatthew G. Knepley - ds - The PetscDS defined on the given region, or NULL 5601e5e52638SMatthew G. Knepley 5602e5e52638SMatthew G. Knepley Level: advanced 5603e5e52638SMatthew G. Knepley 5604db781477SPatrick Sanan .seealso: `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5605e5e52638SMatthew G. Knepley @*/ 5606d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRegionNumDS(DM dm, PetscInt num, DMLabel *label, IS *fields, PetscDS *ds) 5607d71ae5a4SJacob Faibussowitsch { 5608e5e52638SMatthew G. Knepley PetscInt Nds; 5609e5e52638SMatthew G. Knepley 5610e5e52638SMatthew G. Knepley PetscFunctionBegin; 5611e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 56129566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 561363a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 5614e5e52638SMatthew G. Knepley if (label) { 5615e5e52638SMatthew G. Knepley PetscValidPointer(label, 3); 5616e5e52638SMatthew G. Knepley *label = dm->probs[num].label; 5617e5e52638SMatthew G. Knepley } 5618b3cf3223SMatthew G. Knepley if (fields) { 5619b3cf3223SMatthew G. Knepley PetscValidPointer(fields, 4); 5620b3cf3223SMatthew G. Knepley *fields = dm->probs[num].fields; 5621b3cf3223SMatthew G. Knepley } 5622e5e52638SMatthew G. Knepley if (ds) { 5623b3cf3223SMatthew G. Knepley PetscValidPointer(ds, 5); 5624e5e52638SMatthew G. Knepley *ds = dm->probs[num].ds; 5625e5e52638SMatthew G. Knepley } 5626e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5627e5e52638SMatthew G. Knepley } 5628e5e52638SMatthew G. Knepley 5629e5e52638SMatthew G. Knepley /*@ 5630083401c6SMatthew G. Knepley DMSetRegionNumDS - Set the PetscDS for a given mesh region, defined by the region number 5631e5e52638SMatthew G. Knepley 5632083401c6SMatthew G. Knepley Not collective 5633e5e52638SMatthew G. Knepley 5634e5e52638SMatthew G. Knepley Input Parameters: 5635e5e52638SMatthew G. Knepley + dm - The DM 5636083401c6SMatthew G. Knepley . num - The region number, in [0, Nds) 5637083401c6SMatthew G. Knepley . label - The region label, or NULL 5638083401c6SMatthew G. Knepley . fields - The IS containing the DM field numbers for the fields in this DS, or NULL to prevent setting 5639083401c6SMatthew G. Knepley - ds - The PetscDS defined on the given region, or NULL to prevent setting 5640e5e52638SMatthew G. Knepley 5641e5e52638SMatthew G. Knepley Level: advanced 5642e5e52638SMatthew G. Knepley 5643db781477SPatrick Sanan .seealso: `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5644e5e52638SMatthew G. Knepley @*/ 5645d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRegionNumDS(DM dm, PetscInt num, DMLabel label, IS fields, PetscDS ds) 5646d71ae5a4SJacob Faibussowitsch { 5647083401c6SMatthew G. Knepley PetscInt Nds; 5648e5e52638SMatthew G. Knepley 5649e5e52638SMatthew G. Knepley PetscFunctionBegin; 5650e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5651ad540459SPierre Jolivet if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 56529566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 565363a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 56549566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 56559566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[num].label)); 5656083401c6SMatthew G. Knepley dm->probs[num].label = label; 5657083401c6SMatthew G. Knepley if (fields) { 5658083401c6SMatthew G. Knepley PetscValidHeaderSpecific(fields, IS_CLASSID, 4); 56599566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 56609566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[num].fields)); 5661083401c6SMatthew G. Knepley dm->probs[num].fields = fields; 5662e5e52638SMatthew G. Knepley } 5663083401c6SMatthew G. Knepley if (ds) { 5664083401c6SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 5); 56659566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 56669566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[num].ds)); 5667083401c6SMatthew G. Knepley dm->probs[num].ds = ds; 5668083401c6SMatthew G. Knepley } 5669e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5670e5e52638SMatthew G. Knepley } 5671e5e52638SMatthew G. Knepley 5672e5e52638SMatthew G. Knepley /*@ 56731d3af9e0SMatthew G. Knepley DMFindRegionNum - Find the region number for a given PetscDS, or -1 if it is not found. 56741d3af9e0SMatthew G. Knepley 56751d3af9e0SMatthew G. Knepley Not collective 56761d3af9e0SMatthew G. Knepley 56771d3af9e0SMatthew G. Knepley Input Parameters: 56781d3af9e0SMatthew G. Knepley + dm - The DM 56791d3af9e0SMatthew G. Knepley - ds - The PetscDS defined on the given region 56801d3af9e0SMatthew G. Knepley 56811d3af9e0SMatthew G. Knepley Output Parameter: 56821d3af9e0SMatthew G. Knepley . num - The region number, in [0, Nds), or -1 if not found 56831d3af9e0SMatthew G. Knepley 56841d3af9e0SMatthew G. Knepley Level: advanced 56851d3af9e0SMatthew G. Knepley 5686db781477SPatrick Sanan .seealso: `DMGetRegionNumDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 56871d3af9e0SMatthew G. Knepley @*/ 5688d71ae5a4SJacob Faibussowitsch PetscErrorCode DMFindRegionNum(DM dm, PetscDS ds, PetscInt *num) 5689d71ae5a4SJacob Faibussowitsch { 56901d3af9e0SMatthew G. Knepley PetscInt Nds, n; 56911d3af9e0SMatthew G. Knepley 56921d3af9e0SMatthew G. Knepley PetscFunctionBegin; 56931d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 56941d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 2); 5695dadcf809SJacob Faibussowitsch PetscValidIntPointer(num, 3); 56969566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 56979371c9d4SSatish Balay for (n = 0; n < Nds; ++n) 56989371c9d4SSatish Balay if (ds == dm->probs[n].ds) break; 56991d3af9e0SMatthew G. Knepley if (n >= Nds) *num = -1; 57001d3af9e0SMatthew G. Knepley else *num = n; 57011d3af9e0SMatthew G. Knepley PetscFunctionReturn(0); 57021d3af9e0SMatthew G. Knepley } 57031d3af9e0SMatthew G. Knepley 57042df84da0SMatthew G. Knepley /*@C 5705bb7acecfSBarry Smith DMCreateFEDefault - Create a `PetscFE` based on the celltype for the mesh 57062df84da0SMatthew G. Knepley 57072df84da0SMatthew G. Knepley Not collective 57082df84da0SMatthew G. Knepley 5709f1a722f8SMatthew G. Knepley Input Parameters: 5710bb7acecfSBarry Smith + dm - The `DM` 57112df84da0SMatthew G. Knepley . Nc - The number of components for the field 5712bb7acecfSBarry Smith . prefix - The options prefix for the output `PetscFE`, or NULL 5713bb7acecfSBarry Smith - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree 57142df84da0SMatthew G. Knepley 57152df84da0SMatthew G. Knepley Output Parameter: 5716bb7acecfSBarry Smith . fem - The `PetscFE` 57172df84da0SMatthew G. Knepley 5718bb7acecfSBarry Smith Note: 5719bb7acecfSBarry Smith This is a convenience method that just calls `PetscFECreateByCell()` underneath. 57202df84da0SMatthew G. Knepley 57212df84da0SMatthew G. Knepley Level: intermediate 57222df84da0SMatthew G. Knepley 5723db781477SPatrick Sanan .seealso: `PetscFECreateByCell()`, `DMAddField()`, `DMCreateDS()`, `DMGetCellDS()`, `DMGetRegionDS()` 57242df84da0SMatthew G. Knepley @*/ 5725d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFEDefault(DM dm, PetscInt Nc, const char prefix[], PetscInt qorder, PetscFE *fem) 5726d71ae5a4SJacob Faibussowitsch { 57272df84da0SMatthew G. Knepley DMPolytopeType ct; 57282df84da0SMatthew G. Knepley PetscInt dim, cStart; 57292df84da0SMatthew G. Knepley 57302df84da0SMatthew G. Knepley PetscFunctionBegin; 57312df84da0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 57322df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 2); 57332df84da0SMatthew G. Knepley if (prefix) PetscValidCharPointer(prefix, 3); 57342df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, qorder, 4); 57352df84da0SMatthew G. Knepley PetscValidPointer(fem, 5); 57369566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 57379566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 57389566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 57399566063dSJacob Faibussowitsch PetscCall(PetscFECreateByCell(PETSC_COMM_SELF, dim, Nc, ct, prefix, qorder, fem)); 57402df84da0SMatthew G. Knepley PetscFunctionReturn(0); 57412df84da0SMatthew G. Knepley } 57422df84da0SMatthew G. Knepley 57431d3af9e0SMatthew G. Knepley /*@ 5744bb7acecfSBarry Smith DMCreateDS - Create the discrete systems for the `DM` based upon the fields added to the `DM` 5745e5e52638SMatthew G. Knepley 5746d083f849SBarry Smith Collective on dm 5747e5e52638SMatthew G. Knepley 5748e5e52638SMatthew G. Knepley Input Parameter: 5749bb7acecfSBarry Smith . dm - The `DM` 5750e5e52638SMatthew G. Knepley 575145480ffeSMatthew G. Knepley Options Database Keys: 5752bb7acecfSBarry Smith . -dm_petscds_view - View all the `PetscDS` objects in this `DM` 575345480ffeSMatthew G. Knepley 5754bb7acecfSBarry Smith Note: 5755bb7acecfSBarry Smith If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`. 5756e5e52638SMatthew G. Knepley 5757e5e52638SMatthew G. Knepley Level: intermediate 5758e5e52638SMatthew G. Knepley 5759db781477SPatrick Sanan .seealso: `DMSetField`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 5760e5e52638SMatthew G. Knepley @*/ 5761d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDS(DM dm) 5762d71ae5a4SJacob Faibussowitsch { 5763e5e52638SMatthew G. Knepley MPI_Comm comm; 5764083401c6SMatthew G. Knepley PetscDS dsDef; 5765083401c6SMatthew G. Knepley DMLabel *labelSet; 5766f9244615SMatthew G. Knepley PetscInt dE, Nf = dm->Nf, f, s, Nl, l, Ndef, k; 5767f9244615SMatthew G. Knepley PetscBool doSetup = PETSC_TRUE, flg; 5768e5e52638SMatthew G. Knepley 5769e5e52638SMatthew G. Knepley PetscFunctionBegin; 5770e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5771e5e52638SMatthew G. Knepley if (!dm->fields) PetscFunctionReturn(0); 57729566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 57739566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dE)); 5774083401c6SMatthew G. Knepley /* Determine how many regions we have */ 57759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nf, &labelSet)); 5776083401c6SMatthew G. Knepley Nl = 0; 5777083401c6SMatthew G. Knepley Ndef = 0; 5778083401c6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5779083401c6SMatthew G. Knepley DMLabel label = dm->fields[f].label; 5780083401c6SMatthew G. Knepley PetscInt l; 5781083401c6SMatthew G. Knepley 5782f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 5783f918ec44SMatthew G. Knepley /* Move CEED context to discretizations */ 5784f918ec44SMatthew G. Knepley { 5785f918ec44SMatthew G. Knepley PetscClassId id; 5786f918ec44SMatthew G. Knepley 57879566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(dm->fields[f].disc, &id)); 5788f918ec44SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 5789f918ec44SMatthew G. Knepley Ceed ceed; 5790f918ec44SMatthew G. Knepley 57919566063dSJacob Faibussowitsch PetscCall(DMGetCeed(dm, &ceed)); 57929566063dSJacob Faibussowitsch PetscCall(PetscFESetCeed((PetscFE)dm->fields[f].disc, ceed)); 5793f918ec44SMatthew G. Knepley } 5794f918ec44SMatthew G. Knepley } 5795f918ec44SMatthew G. Knepley #endif 57969371c9d4SSatish Balay if (!label) { 57979371c9d4SSatish Balay ++Ndef; 57989371c9d4SSatish Balay continue; 57999371c9d4SSatish Balay } 58009371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 58019371c9d4SSatish Balay if (label == labelSet[l]) break; 5802083401c6SMatthew G. Knepley if (l < Nl) continue; 5803083401c6SMatthew G. Knepley labelSet[Nl++] = label; 5804083401c6SMatthew G. Knepley } 5805083401c6SMatthew G. Knepley /* Create default DS if there are no labels to intersect with */ 58069566063dSJacob Faibussowitsch PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef)); 5807083401c6SMatthew G. Knepley if (!dsDef && Ndef && !Nl) { 5808b3cf3223SMatthew G. Knepley IS fields; 5809b3cf3223SMatthew G. Knepley PetscInt *fld, nf; 5810b3cf3223SMatthew G. Knepley 58119371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 58129371c9d4SSatish Balay if (!dm->fields[f].label) ++nf; 58137a8be351SBarry Smith PetscCheck(nf, comm, PETSC_ERR_PLIB, "All fields have labels, but we are trying to create a default DS"); 58149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 58159371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 58169371c9d4SSatish Balay if (!dm->fields[f].label) fld[nf++] = f; 58179566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 58189566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 58199566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 58209566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 582188f0c812SMatthew G. Knepley 58229566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 58239566063dSJacob Faibussowitsch PetscCall(DMSetRegionDS(dm, NULL, fields, dsDef)); 58249566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 58259566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fields)); 58262df9ee95SMatthew G. Knepley } 58279566063dSJacob Faibussowitsch PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef)); 58289566063dSJacob Faibussowitsch if (dsDef) PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 5829083401c6SMatthew G. Knepley /* Intersect labels with default fields */ 5830083401c6SMatthew G. Knepley if (Ndef && Nl) { 58310122748bSMatthew G. Knepley DM plex; 5832083401c6SMatthew G. Knepley DMLabel cellLabel; 5833083401c6SMatthew G. Knepley IS fieldIS, allcellIS, defcellIS = NULL; 5834083401c6SMatthew G. Knepley PetscInt *fields; 5835083401c6SMatthew G. Knepley const PetscInt *cells; 5836083401c6SMatthew G. Knepley PetscInt depth, nf = 0, n, c; 58370122748bSMatthew G. Knepley 58389566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 58399566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(plex, &depth)); 58409566063dSJacob Faibussowitsch PetscCall(DMGetStratumIS(plex, "dim", depth, &allcellIS)); 58419566063dSJacob Faibussowitsch if (!allcellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &allcellIS)); 58425fedec97SMatthew G. Knepley /* TODO This looks like it only works for one label */ 5843083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 5844083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 5845083401c6SMatthew G. Knepley IS pointIS; 5846083401c6SMatthew G. Knepley 58479566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 58489566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, 1, &pointIS)); 58499566063dSJacob Faibussowitsch PetscCall(ISDifference(allcellIS, pointIS, &defcellIS)); 58509566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 5851083401c6SMatthew G. Knepley } 58529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&allcellIS)); 5853083401c6SMatthew G. Knepley 58549566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "defaultCells", &cellLabel)); 58559566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(defcellIS, &n)); 58569566063dSJacob Faibussowitsch PetscCall(ISGetIndices(defcellIS, &cells)); 58579566063dSJacob Faibussowitsch for (c = 0; c < n; ++c) PetscCall(DMLabelSetValue(cellLabel, cells[c], 1)); 58589566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(defcellIS, &cells)); 58599566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 58609566063dSJacob Faibussowitsch PetscCall(DMPlexLabelComplete(plex, cellLabel)); 5861083401c6SMatthew G. Knepley 58629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ndef, &fields)); 58639371c9d4SSatish Balay for (f = 0; f < Nf; ++f) 58649371c9d4SSatish Balay if (!dm->fields[f].label) fields[nf++] = f; 58659566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fieldIS)); 58669566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fieldIS, "dm_fields_")); 58679566063dSJacob Faibussowitsch PetscCall(ISSetType(fieldIS, ISGENERAL)); 58689566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fieldIS, nf, fields, PETSC_OWN_POINTER)); 5869083401c6SMatthew G. Knepley 58709566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 58719566063dSJacob Faibussowitsch PetscCall(DMSetRegionDS(dm, cellLabel, fieldIS, dsDef)); 58729566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 58739566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&cellLabel)); 58749566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 58759566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fieldIS)); 58769566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 5877083401c6SMatthew G. Knepley } 5878083401c6SMatthew G. Knepley /* Create label DSes 5879083401c6SMatthew G. Knepley - WE ONLY SUPPORT IDENTICAL OR DISJOINT LABELS 5880083401c6SMatthew G. Knepley */ 5881083401c6SMatthew G. Knepley /* TODO Should check that labels are disjoint */ 5882083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 5883083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 5884083401c6SMatthew G. Knepley PetscDS ds; 5885083401c6SMatthew G. Knepley IS fields; 5886083401c6SMatthew G. Knepley PetscInt *fld, nf; 5887083401c6SMatthew G. Knepley 58889566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 58899371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 58909371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) ++nf; 58919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 58929371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 58939371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) fld[nf++] = f; 58949566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 58959566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 58969566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 58979566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 58989566063dSJacob Faibussowitsch PetscCall(DMSetRegionDS(dm, label, fields, ds)); 58999566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fields)); 59009566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(ds, dE)); 5901083401c6SMatthew G. Knepley { 5902083401c6SMatthew G. Knepley DMPolytopeType ct; 5903083401c6SMatthew G. Knepley PetscInt lStart, lEnd; 59045fedec97SMatthew G. Knepley PetscBool isCohesiveLocal = PETSC_FALSE, isCohesive; 59050122748bSMatthew G. Knepley 59069566063dSJacob Faibussowitsch PetscCall(DMLabelGetBounds(label, &lStart, &lEnd)); 5907665f567fSMatthew G. Knepley if (lStart >= 0) { 59089566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, lStart, &ct)); 5909412e9a14SMatthew G. Knepley switch (ct) { 5910412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 5911412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 5912412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 5913d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_QUAD_PRISM_TENSOR: 5914d71ae5a4SJacob Faibussowitsch isCohesiveLocal = PETSC_TRUE; 5915d71ae5a4SJacob Faibussowitsch break; 5916d71ae5a4SJacob Faibussowitsch default: 5917d71ae5a4SJacob Faibussowitsch break; 5918412e9a14SMatthew G. Knepley } 5919665f567fSMatthew G. Knepley } 59209566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(&isCohesiveLocal, &isCohesive, 1, MPIU_BOOL, MPI_LOR, comm)); 59215fedec97SMatthew G. Knepley for (f = 0, nf = 0; f < Nf; ++f) { 59225fedec97SMatthew G. Knepley if (label == dm->fields[f].label || !dm->fields[f].label) { 59235fedec97SMatthew G. Knepley if (label == dm->fields[f].label) { 59249566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, nf, NULL)); 59259566063dSJacob Faibussowitsch PetscCall(PetscDSSetCohesive(ds, nf, isCohesive)); 59265fedec97SMatthew G. Knepley } 59275fedec97SMatthew G. Knepley ++nf; 59285fedec97SMatthew G. Knepley } 59295fedec97SMatthew G. Knepley } 5930e5e52638SMatthew G. Knepley } 59319566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 5932e5e52638SMatthew G. Knepley } 59339566063dSJacob Faibussowitsch PetscCall(PetscFree(labelSet)); 5934e5e52638SMatthew G. Knepley /* Set fields in DSes */ 5935083401c6SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 5936083401c6SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 5937083401c6SMatthew G. Knepley IS fields = dm->probs[s].fields; 5938083401c6SMatthew G. Knepley const PetscInt *fld; 59395fedec97SMatthew G. Knepley PetscInt nf, dsnf; 59405fedec97SMatthew G. Knepley PetscBool isCohesive; 5941e5e52638SMatthew G. Knepley 59429566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsnf)); 59439566063dSJacob Faibussowitsch PetscCall(PetscDSIsCohesive(ds, &isCohesive)); 59449566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(fields, &nf)); 59459566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fields, &fld)); 5946083401c6SMatthew G. Knepley for (f = 0; f < nf; ++f) { 5947083401c6SMatthew G. Knepley PetscObject disc = dm->fields[fld[f]].disc; 59485fedec97SMatthew G. Knepley PetscBool isCohesiveField; 5949e5e52638SMatthew G. Knepley PetscClassId id; 5950e5e52638SMatthew G. Knepley 59515fedec97SMatthew G. Knepley /* Handle DS with no fields */ 59529566063dSJacob Faibussowitsch if (dsnf) PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField)); 59535fedec97SMatthew G. Knepley /* If this is a cohesive cell, then regular fields need the lower dimensional discretization */ 59549566063dSJacob Faibussowitsch if (isCohesive && !isCohesiveField) PetscCall(PetscFEGetHeightSubspace((PetscFE)disc, 1, (PetscFE *)&disc)); 59559566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, f, disc)); 5956083401c6SMatthew G. Knepley /* We allow people to have placeholder fields and construct the Section by hand */ 59579566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 5958e5e52638SMatthew G. Knepley if ((id != PETSCFE_CLASSID) && (id != PETSCFV_CLASSID)) doSetup = PETSC_FALSE; 5959e5e52638SMatthew G. Knepley } 59609566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fields, &fld)); 5961e5e52638SMatthew G. Knepley } 5962f9244615SMatthew G. Knepley /* Allow k-jet tabulation */ 59639566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)dm)->prefix, "-dm_ds_jet_degree", &k, &flg)); 5964f9244615SMatthew G. Knepley if (flg) { 59653b4aee56SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 59663b4aee56SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 59673b4aee56SMatthew G. Knepley PetscInt Nf, f; 59683b4aee56SMatthew G. Knepley 59699566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 59709566063dSJacob Faibussowitsch for (f = 0; f < Nf; ++f) PetscCall(PetscDSSetJetDegree(ds, f, k)); 59713b4aee56SMatthew G. Knepley } 5972f9244615SMatthew G. Knepley } 5973e5e52638SMatthew G. Knepley /* Setup DSes */ 5974e5e52638SMatthew G. Knepley if (doSetup) { 59759566063dSJacob Faibussowitsch for (s = 0; s < dm->Nds; ++s) PetscCall(PetscDSSetUp(dm->probs[s].ds)); 5976e5e52638SMatthew G. Knepley } 5977e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5978e5e52638SMatthew G. Knepley } 5979e5e52638SMatthew G. Knepley 5980e5e52638SMatthew G. Knepley /*@ 5981bb7acecfSBarry Smith DMComputeExactSolution - Compute the exact solution for a given `DM`, using the `PetscDS` information. 59827f96f943SMatthew G. Knepley 5983bb7acecfSBarry Smith Collective on `DM` 5984f2cacb80SMatthew G. Knepley 59857f96f943SMatthew G. Knepley Input Parameters: 5986bb7acecfSBarry Smith + dm - The `DM` 59877f96f943SMatthew G. Knepley - time - The time 59887f96f943SMatthew G. Knepley 59897f96f943SMatthew G. Knepley Output Parameters: 5990f2cacb80SMatthew G. Knepley + u - The vector will be filled with exact solution values, or NULL 5991f2cacb80SMatthew G. Knepley - u_t - The vector will be filled with the time derivative of exact solution values, or NULL 59927f96f943SMatthew G. Knepley 5993bb7acecfSBarry Smith Note: 5994bb7acecfSBarry Smith The user must call `PetscDSSetExactSolution()` before using this routine 59957f96f943SMatthew G. Knepley 59967f96f943SMatthew G. Knepley Level: developer 59977f96f943SMatthew G. Knepley 5998db781477SPatrick Sanan .seealso: `PetscDSSetExactSolution()` 59997f96f943SMatthew G. Knepley @*/ 6000d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeExactSolution(DM dm, PetscReal time, Vec u, Vec u_t) 6001d71ae5a4SJacob Faibussowitsch { 60027f96f943SMatthew G. Knepley PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 60037f96f943SMatthew G. Knepley void **ectxs; 60047f96f943SMatthew G. Knepley PetscInt Nf, Nds, s; 60057f96f943SMatthew G. Knepley 60067f96f943SMatthew G. Knepley PetscFunctionBegin; 6007f2cacb80SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6008f2cacb80SMatthew G. Knepley if (u) PetscValidHeaderSpecific(u, VEC_CLASSID, 3); 6009f2cacb80SMatthew G. Knepley if (u_t) PetscValidHeaderSpecific(u_t, VEC_CLASSID, 4); 60109566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 60119566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(Nf, &exacts, Nf, &ectxs)); 60129566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 60137f96f943SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 60147f96f943SMatthew G. Knepley PetscDS ds; 60157f96f943SMatthew G. Knepley DMLabel label; 60167f96f943SMatthew G. Knepley IS fieldIS; 60177f96f943SMatthew G. Knepley const PetscInt *fields, id = 1; 60187f96f943SMatthew G. Knepley PetscInt dsNf, f; 60197f96f943SMatthew G. Knepley 60209566063dSJacob Faibussowitsch PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds)); 60219566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 60229566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fieldIS, &fields)); 60239566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 60249566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6025f2cacb80SMatthew G. Knepley if (u) { 60267f96f943SMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 60277f96f943SMatthew G. Knepley const PetscInt field = fields[f]; 60289566063dSJacob Faibussowitsch PetscCall(PetscDSGetExactSolution(ds, field, &exacts[field], &ectxs[field])); 60297f96f943SMatthew G. Knepley } 60309566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fieldIS, &fields)); 60317f96f943SMatthew G. Knepley if (label) { 60329566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabel(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, u)); 60337f96f943SMatthew G. Knepley } else { 60349566063dSJacob Faibussowitsch PetscCall(DMProjectFunction(dm, time, exacts, ectxs, INSERT_ALL_VALUES, u)); 60357f96f943SMatthew G. Knepley } 60367f96f943SMatthew G. Knepley } 6037f2cacb80SMatthew G. Knepley if (u_t) { 60389566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 60399566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6040f2cacb80SMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 6041f2cacb80SMatthew G. Knepley const PetscInt field = fields[f]; 60429566063dSJacob Faibussowitsch PetscCall(PetscDSGetExactSolutionTimeDerivative(ds, field, &exacts[field], &ectxs[field])); 6043f2cacb80SMatthew G. Knepley } 60449566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fieldIS, &fields)); 6045f2cacb80SMatthew G. Knepley if (label) { 60469566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabel(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, u_t)); 6047f2cacb80SMatthew G. Knepley } else { 60489566063dSJacob Faibussowitsch PetscCall(DMProjectFunction(dm, time, exacts, ectxs, INSERT_ALL_VALUES, u_t)); 6049f2cacb80SMatthew G. Knepley } 6050f2cacb80SMatthew G. Knepley } 6051f2cacb80SMatthew G. Knepley } 6052f2cacb80SMatthew G. Knepley if (u) { 60539566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution")); 60549566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u, "exact_")); 6055f2cacb80SMatthew G. Knepley } 6056f2cacb80SMatthew G. Knepley if (u_t) { 60579566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution Time Derivative")); 60589566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u_t, "exact_t_")); 6059f2cacb80SMatthew G. Knepley } 60609566063dSJacob Faibussowitsch PetscCall(PetscFree2(exacts, ectxs)); 60617f96f943SMatthew G. Knepley PetscFunctionReturn(0); 60627f96f943SMatthew G. Knepley } 60637f96f943SMatthew G. Knepley 6064d71ae5a4SJacob Faibussowitsch PetscErrorCode DMTransferDS_Internal(DM dm, DMLabel label, IS fields, PetscDS ds) 6065d71ae5a4SJacob Faibussowitsch { 606645480ffeSMatthew G. Knepley PetscDS dsNew; 606745480ffeSMatthew G. Knepley DSBoundary b; 60686a02485aSMatthew G. Knepley PetscInt cdim, Nf, f, d; 60695fedec97SMatthew G. Knepley PetscBool isCohesive; 607045480ffeSMatthew G. Knepley void *ctx; 607145480ffeSMatthew G. Knepley 607245480ffeSMatthew G. Knepley PetscFunctionBegin; 60739566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)ds), &dsNew)); 60749566063dSJacob Faibussowitsch PetscCall(PetscDSCopyConstants(ds, dsNew)); 60759566063dSJacob Faibussowitsch PetscCall(PetscDSCopyExactSolutions(ds, dsNew)); 60769566063dSJacob Faibussowitsch PetscCall(PetscDSSelectDiscretizations(ds, PETSC_DETERMINE, NULL, dsNew)); 60779566063dSJacob Faibussowitsch PetscCall(PetscDSCopyEquations(ds, dsNew)); 60789566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 607945480ffeSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 60809566063dSJacob Faibussowitsch PetscCall(PetscDSGetContext(ds, f, &ctx)); 60819566063dSJacob Faibussowitsch PetscCall(PetscDSSetContext(dsNew, f, ctx)); 60829566063dSJacob Faibussowitsch PetscCall(PetscDSGetCohesive(ds, f, &isCohesive)); 60839566063dSJacob Faibussowitsch PetscCall(PetscDSSetCohesive(dsNew, f, isCohesive)); 60846a02485aSMatthew G. Knepley PetscCall(PetscDSGetJetDegree(ds, f, &d)); 60856a02485aSMatthew G. Knepley PetscCall(PetscDSSetJetDegree(dsNew, f, d)); 608645480ffeSMatthew G. Knepley } 608745480ffeSMatthew G. Knepley if (Nf) { 60889566063dSJacob Faibussowitsch PetscCall(PetscDSGetCoordinateDimension(ds, &cdim)); 60899566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(dsNew, cdim)); 609045480ffeSMatthew G. Knepley } 60919566063dSJacob Faibussowitsch PetscCall(PetscDSCopyBoundary(ds, PETSC_DETERMINE, NULL, dsNew)); 609245480ffeSMatthew G. Knepley for (b = dsNew->boundary; b; b = b->next) { 60939566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, b->lname, &b->label)); 609445480ffeSMatthew G. Knepley /* Do not check if label exists here, since p4est calls this for the reference tree which does not have the labels */ 60957a8be351SBarry Smith //PetscCheck(b->label,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Label %s missing in new DM", name); 609645480ffeSMatthew G. Knepley } 609745480ffeSMatthew G. Knepley 60989566063dSJacob Faibussowitsch PetscCall(DMSetRegionDS(dm, label, fields, dsNew)); 60999566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsNew)); 610045480ffeSMatthew G. Knepley PetscFunctionReturn(0); 610145480ffeSMatthew G. Knepley } 610245480ffeSMatthew G. Knepley 61037f96f943SMatthew G. Knepley /*@ 6104bb7acecfSBarry Smith DMCopyDS - Copy the discrete systems for the `DM` into another `DM` 6105e5e52638SMatthew G. Knepley 6106d083f849SBarry Smith Collective on dm 6107e5e52638SMatthew G. Knepley 6108e5e52638SMatthew G. Knepley Input Parameter: 6109bb7acecfSBarry Smith . dm - The `DM` 6110e5e52638SMatthew G. Knepley 6111e5e52638SMatthew G. Knepley Output Parameter: 6112bb7acecfSBarry Smith . newdm - The `DM` 6113e5e52638SMatthew G. Knepley 6114e5e52638SMatthew G. Knepley Level: advanced 6115e5e52638SMatthew G. Knepley 6116db781477SPatrick Sanan .seealso: `DMCopyFields()`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 6117e5e52638SMatthew G. Knepley @*/ 6118d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDS(DM dm, DM newdm) 6119d71ae5a4SJacob Faibussowitsch { 6120e5e52638SMatthew G. Knepley PetscInt Nds, s; 6121e5e52638SMatthew G. Knepley 6122e5e52638SMatthew G. Knepley PetscFunctionBegin; 6123e5e52638SMatthew G. Knepley if (dm == newdm) PetscFunctionReturn(0); 61249566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 61259566063dSJacob Faibussowitsch PetscCall(DMClearDS(newdm)); 6126e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 6127e5e52638SMatthew G. Knepley DMLabel label; 6128b3cf3223SMatthew G. Knepley IS fields; 612945480ffeSMatthew G. Knepley PetscDS ds, newds; 6130783e2ec8SMatthew G. Knepley PetscInt Nbd, bd; 6131e5e52638SMatthew G. Knepley 61329566063dSJacob Faibussowitsch PetscCall(DMGetRegionNumDS(dm, s, &label, &fields, &ds)); 6133b8025e53SMatthew G. Knepley /* TODO: We need to change all keys from labels in the old DM to labels in the new DM */ 61349566063dSJacob Faibussowitsch PetscCall(DMTransferDS_Internal(newdm, label, fields, ds)); 6135d5b43468SJose E. Roman /* Complete new labels in the new DS */ 61369566063dSJacob Faibussowitsch PetscCall(DMGetRegionDS(newdm, label, NULL, &newds)); 61379566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(newds, &Nbd)); 6138783e2ec8SMatthew G. Knepley for (bd = 0; bd < Nbd; ++bd) { 6139b8025e53SMatthew G. Knepley PetscWeakForm wf; 614045480ffeSMatthew G. Knepley DMLabel label; 6141783e2ec8SMatthew G. Knepley PetscInt field; 6142783e2ec8SMatthew G. Knepley 61439566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(newds, bd, &wf, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 61449566063dSJacob Faibussowitsch PetscCall(PetscWeakFormReplaceLabel(wf, label)); 6145783e2ec8SMatthew G. Knepley } 6146e5e52638SMatthew G. Knepley } 6147799db056SMatthew G. Knepley PetscCall(DMCompleteBCLabels_Internal(newdm)); 6148e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 6149e5e52638SMatthew G. Knepley } 6150e5e52638SMatthew G. Knepley 6151e5e52638SMatthew G. Knepley /*@ 6152bb7acecfSBarry Smith DMCopyDisc - Copy the fields and discrete systems for the `DM` into another `DM` 6153e5e52638SMatthew G. Knepley 6154d083f849SBarry Smith Collective on dm 6155e5e52638SMatthew G. Knepley 6156e5e52638SMatthew G. Knepley Input Parameter: 6157bb7acecfSBarry Smith . dm - The `DM` 6158e5e52638SMatthew G. Knepley 6159e5e52638SMatthew G. Knepley Output Parameter: 6160bb7acecfSBarry Smith . newdm - The `DM` 6161e5e52638SMatthew G. Knepley 6162e5e52638SMatthew G. Knepley Level: advanced 6163e5e52638SMatthew G. Knepley 6164bb7acecfSBarry Smith Developer Note: 6165bb7acecfSBarry Smith Really ugly name, nothing in PETSc is called a `Disc` plus it is an ugly abbreviation 6166bb7acecfSBarry Smith 6167db781477SPatrick Sanan .seealso: `DMCopyFields()`, `DMCopyDS()` 6168e5e52638SMatthew G. Knepley @*/ 6169d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDisc(DM dm, DM newdm) 6170d71ae5a4SJacob Faibussowitsch { 6171e5e52638SMatthew G. Knepley PetscFunctionBegin; 61729566063dSJacob Faibussowitsch PetscCall(DMCopyFields(dm, newdm)); 61739566063dSJacob Faibussowitsch PetscCall(DMCopyDS(dm, newdm)); 6174e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 6175e5e52638SMatthew G. Knepley } 6176e5e52638SMatthew G. Knepley 6177c73cfb54SMatthew G. Knepley /*@ 6178bb7acecfSBarry Smith DMGetDimension - Return the topological dimension of the `DM` 6179c73cfb54SMatthew G. Knepley 6180c73cfb54SMatthew G. Knepley Not collective 6181c73cfb54SMatthew G. Knepley 6182c73cfb54SMatthew G. Knepley Input Parameter: 6183bb7acecfSBarry Smith . dm - The `DM` 6184c73cfb54SMatthew G. Knepley 6185c73cfb54SMatthew G. Knepley Output Parameter: 6186c73cfb54SMatthew G. Knepley . dim - The topological dimension 6187c73cfb54SMatthew G. Knepley 6188c73cfb54SMatthew G. Knepley Level: beginner 6189c73cfb54SMatthew G. Knepley 6190db781477SPatrick Sanan .seealso: `DMSetDimension()`, `DMCreate()` 6191c73cfb54SMatthew G. Knepley @*/ 6192d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimension(DM dm, PetscInt *dim) 6193d71ae5a4SJacob Faibussowitsch { 6194c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6195c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6196534a8f05SLisandro Dalcin PetscValidIntPointer(dim, 2); 6197c73cfb54SMatthew G. Knepley *dim = dm->dim; 6198c73cfb54SMatthew G. Knepley PetscFunctionReturn(0); 6199c73cfb54SMatthew G. Knepley } 6200c73cfb54SMatthew G. Knepley 6201c73cfb54SMatthew G. Knepley /*@ 6202bb7acecfSBarry Smith DMSetDimension - Set the topological dimension of the `DM` 6203c73cfb54SMatthew G. Knepley 6204c73cfb54SMatthew G. Knepley Collective on dm 6205c73cfb54SMatthew G. Knepley 6206c73cfb54SMatthew G. Knepley Input Parameters: 6207bb7acecfSBarry Smith + dm - The `DM` 6208c73cfb54SMatthew G. Knepley - dim - The topological dimension 6209c73cfb54SMatthew G. Knepley 6210c73cfb54SMatthew G. Knepley Level: beginner 6211c73cfb54SMatthew G. Knepley 6212db781477SPatrick Sanan .seealso: `DMGetDimension()`, `DMCreate()` 6213c73cfb54SMatthew G. Knepley @*/ 6214d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDimension(DM dm, PetscInt dim) 6215d71ae5a4SJacob Faibussowitsch { 6216e5e52638SMatthew G. Knepley PetscDS ds; 621745480ffeSMatthew G. Knepley PetscInt Nds, n; 6218f17e8794SMatthew G. Knepley 6219c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6220c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6221c73cfb54SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, dim, 2); 6222c73cfb54SMatthew G. Knepley dm->dim = dim; 6223d17bd122SMatthew G. Knepley if (dm->dim >= 0) { 62249566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 622545480ffeSMatthew G. Knepley for (n = 0; n < Nds; ++n) { 62269566063dSJacob Faibussowitsch PetscCall(DMGetRegionNumDS(dm, n, NULL, NULL, &ds)); 62279566063dSJacob Faibussowitsch if (ds->dimEmbed < 0) PetscCall(PetscDSSetCoordinateDimension(ds, dim)); 622845480ffeSMatthew G. Knepley } 6229d17bd122SMatthew G. Knepley } 6230c73cfb54SMatthew G. Knepley PetscFunctionReturn(0); 6231c73cfb54SMatthew G. Knepley } 6232c73cfb54SMatthew G. Knepley 6233793f3fe5SMatthew G. Knepley /*@ 6234793f3fe5SMatthew G. Knepley DMGetDimPoints - Get the half-open interval for all points of a given dimension 6235793f3fe5SMatthew G. Knepley 6236d083f849SBarry Smith Collective on dm 6237793f3fe5SMatthew G. Knepley 6238793f3fe5SMatthew G. Knepley Input Parameters: 6239bb7acecfSBarry Smith + dm - the `DM` 6240793f3fe5SMatthew G. Knepley - dim - the dimension 6241793f3fe5SMatthew G. Knepley 6242793f3fe5SMatthew G. Knepley Output Parameters: 6243793f3fe5SMatthew G. Knepley + pStart - The first point of the given dimension 6244aa049354SPatrick Sanan - pEnd - The first point following points of the given dimension 6245793f3fe5SMatthew G. Knepley 6246793f3fe5SMatthew G. Knepley Note: 6247793f3fe5SMatthew G. Knepley The points are vertices in the Hasse diagram encoding the topology. This is explained in 6248a8d69d7bSBarry Smith https://arxiv.org/abs/0908.4427. If no points exist of this dimension in the storage scheme, 6249793f3fe5SMatthew G. Knepley then the interval is empty. 6250793f3fe5SMatthew G. Knepley 6251793f3fe5SMatthew G. Knepley Level: intermediate 6252793f3fe5SMatthew G. Knepley 6253db781477SPatrick Sanan .seealso: `DMPLEX`, `DMPlexGetDepthStratum()`, `DMPlexGetHeightStratum()` 6254793f3fe5SMatthew G. Knepley @*/ 6255d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimPoints(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd) 6256d71ae5a4SJacob Faibussowitsch { 6257793f3fe5SMatthew G. Knepley PetscInt d; 6258793f3fe5SMatthew G. Knepley 6259793f3fe5SMatthew G. Knepley PetscFunctionBegin; 6260793f3fe5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 62619566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &d)); 62627a8be351SBarry Smith PetscCheck((dim >= 0) && (dim <= d), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %" PetscInt_FMT, dim); 6263dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getdimpoints, dim, pStart, pEnd); 6264793f3fe5SMatthew G. Knepley PetscFunctionReturn(0); 6265793f3fe5SMatthew G. Knepley } 6266793f3fe5SMatthew G. Knepley 62676636e97aSMatthew G Knepley /*@ 6268bb7acecfSBarry Smith DMGetOutputDM - Retrieve the `DM` associated with the layout for output 6269f4d763aaSMatthew G. Knepley 62708f700142SStefano Zampini Collective on dm 62718f700142SStefano Zampini 6272f4d763aaSMatthew G. Knepley Input Parameter: 6273bb7acecfSBarry Smith . dm - The original `DM` 6274f4d763aaSMatthew G. Knepley 6275f4d763aaSMatthew G. Knepley Output Parameter: 6276bb7acecfSBarry Smith . odm - The `DM` which provides the layout for output 6277f4d763aaSMatthew G. Knepley 6278f4d763aaSMatthew G. Knepley Level: intermediate 6279f4d763aaSMatthew G. Knepley 6280bb7acecfSBarry Smith Note: 6281bb7acecfSBarry Smith In some situations the vector obtained with `DMCreateGlobalVector()` excludes points for degrees of freedom that are associated with fixed (Dirichelet) boundary 6282bb7acecfSBarry Smith conditions since the algebraic solver does not solve for those variables. The output `DM` includes these excluded points and its global vector contains the 6283bb7acecfSBarry Smith locations for those dof so that they can be output to a file or other viewer along with the unconstrained dof. 6284bb7acecfSBarry Smith 6285bb7acecfSBarry Smith .seealso: `VecView()`, `DMGetGlobalSection()`, `DMCreateGlobalVector()`, `PetscSectionHasConstraints()`, `DMSetGlobalSection()` 6286f4d763aaSMatthew G. Knepley @*/ 6287d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputDM(DM dm, DM *odm) 6288d71ae5a4SJacob Faibussowitsch { 6289c26acbdeSMatthew G. Knepley PetscSection section; 62902d4e4a49SMatthew G. Knepley PetscBool hasConstraints, ghasConstraints; 629114f150ffSMatthew G. Knepley 629214f150ffSMatthew G. Knepley PetscFunctionBegin; 629314f150ffSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 629414f150ffSMatthew G. Knepley PetscValidPointer(odm, 2); 62959566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 62969566063dSJacob Faibussowitsch PetscCall(PetscSectionHasConstraints(section, &hasConstraints)); 62979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(&hasConstraints, &ghasConstraints, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm))); 62982d4e4a49SMatthew G. Knepley if (!ghasConstraints) { 6299c26acbdeSMatthew G. Knepley *odm = dm; 6300c26acbdeSMatthew G. Knepley PetscFunctionReturn(0); 6301c26acbdeSMatthew G. Knepley } 630214f150ffSMatthew G. Knepley if (!dm->dmBC) { 6303c26acbdeSMatthew G. Knepley PetscSection newSection, gsection; 630414f150ffSMatthew G. Knepley PetscSF sf; 630514f150ffSMatthew G. Knepley 63069566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->dmBC)); 63079566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, dm->dmBC)); 63089566063dSJacob Faibussowitsch PetscCall(PetscSectionClone(section, &newSection)); 63099566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm->dmBC, newSection)); 63109566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newSection)); 63119566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm->dmBC, &sf)); 63129566063dSJacob Faibussowitsch PetscCall(PetscSectionCreateGlobalSection(section, sf, PETSC_TRUE, PETSC_FALSE, &gsection)); 63139566063dSJacob Faibussowitsch PetscCall(DMSetGlobalSection(dm->dmBC, gsection)); 63149566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&gsection)); 631514f150ffSMatthew G. Knepley } 631614f150ffSMatthew G. Knepley *odm = dm->dmBC; 631714f150ffSMatthew G. Knepley PetscFunctionReturn(0); 631814f150ffSMatthew G. Knepley } 6319f4d763aaSMatthew G. Knepley 6320f4d763aaSMatthew G. Knepley /*@ 6321cdb7a50dSMatthew G. Knepley DMGetOutputSequenceNumber - Retrieve the sequence number/value for output 6322f4d763aaSMatthew G. Knepley 6323f4d763aaSMatthew G. Knepley Input Parameter: 6324bb7acecfSBarry Smith . dm - The original `DM` 6325f4d763aaSMatthew G. Knepley 6326cdb7a50dSMatthew G. Knepley Output Parameters: 6327cdb7a50dSMatthew G. Knepley + num - The output sequence number 6328cdb7a50dSMatthew G. Knepley - val - The output sequence value 6329f4d763aaSMatthew G. Knepley 6330f4d763aaSMatthew G. Knepley Level: intermediate 6331f4d763aaSMatthew G. Knepley 6332bb7acecfSBarry Smith Note: 6333bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6334bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6335bb7acecfSBarry Smith 6336bb7acecfSBarry Smith Developer Note: 6337bb7acecfSBarry Smith The `DM` serves as a convenient place to store the current iteration value. The iteration is not 6338bb7acecfSBarry Smith not directly related to the `DM`. 6339f4d763aaSMatthew G. Knepley 6340db781477SPatrick Sanan .seealso: `VecView()` 6341f4d763aaSMatthew G. Knepley @*/ 6342d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputSequenceNumber(DM dm, PetscInt *num, PetscReal *val) 6343d71ae5a4SJacob Faibussowitsch { 6344f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6345f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 63469371c9d4SSatish Balay if (num) { 63479371c9d4SSatish Balay PetscValidIntPointer(num, 2); 63489371c9d4SSatish Balay *num = dm->outputSequenceNum; 63499371c9d4SSatish Balay } 63509371c9d4SSatish Balay if (val) { 63519371c9d4SSatish Balay PetscValidRealPointer(val, 3); 63529371c9d4SSatish Balay *val = dm->outputSequenceVal; 63539371c9d4SSatish Balay } 6354f4d763aaSMatthew G. Knepley PetscFunctionReturn(0); 6355f4d763aaSMatthew G. Knepley } 6356f4d763aaSMatthew G. Knepley 6357f4d763aaSMatthew G. Knepley /*@ 6358cdb7a50dSMatthew G. Knepley DMSetOutputSequenceNumber - Set the sequence number/value for output 6359f4d763aaSMatthew G. Knepley 6360f4d763aaSMatthew G. Knepley Input Parameters: 6361bb7acecfSBarry Smith + dm - The original `DM` 6362cdb7a50dSMatthew G. Knepley . num - The output sequence number 6363cdb7a50dSMatthew G. Knepley - val - The output sequence value 6364f4d763aaSMatthew G. Knepley 6365f4d763aaSMatthew G. Knepley Level: intermediate 6366f4d763aaSMatthew G. Knepley 6367bb7acecfSBarry Smith Note: 6368bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6369bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6370f4d763aaSMatthew G. Knepley 6371db781477SPatrick Sanan .seealso: `VecView()` 6372f4d763aaSMatthew G. Knepley @*/ 6373d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOutputSequenceNumber(DM dm, PetscInt num, PetscReal val) 6374d71ae5a4SJacob Faibussowitsch { 6375f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6376f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6377f4d763aaSMatthew G. Knepley dm->outputSequenceNum = num; 6378cdb7a50dSMatthew G. Knepley dm->outputSequenceVal = val; 6379cdb7a50dSMatthew G. Knepley PetscFunctionReturn(0); 6380cdb7a50dSMatthew G. Knepley } 6381cdb7a50dSMatthew G. Knepley 6382cdb7a50dSMatthew G. Knepley /*@C 6383bb7acecfSBarry Smith DMOutputSequenceLoad - Retrieve the sequence value from a `PetscViewer` 6384cdb7a50dSMatthew G. Knepley 6385cdb7a50dSMatthew G. Knepley Input Parameters: 6386bb7acecfSBarry Smith + dm - The original `DM` 6387cdb7a50dSMatthew G. Knepley . name - The sequence name 6388cdb7a50dSMatthew G. Knepley - num - The output sequence number 6389cdb7a50dSMatthew G. Knepley 6390cdb7a50dSMatthew G. Knepley Output Parameter: 6391cdb7a50dSMatthew G. Knepley . val - The output sequence value 6392cdb7a50dSMatthew G. Knepley 6393cdb7a50dSMatthew G. Knepley Level: intermediate 6394cdb7a50dSMatthew G. Knepley 6395bb7acecfSBarry Smith Note: 6396bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6397bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6398bb7acecfSBarry Smith 6399bb7acecfSBarry Smith Developer Note: 6400bb7acecfSBarry Smith It is unclear at the user API level why a `DM` is needed as input 6401cdb7a50dSMatthew G. Knepley 6402db781477SPatrick Sanan .seealso: `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()` 6403cdb7a50dSMatthew G. Knepley @*/ 6404d71ae5a4SJacob Faibussowitsch PetscErrorCode DMOutputSequenceLoad(DM dm, PetscViewer viewer, const char *name, PetscInt num, PetscReal *val) 6405d71ae5a4SJacob Faibussowitsch { 6406cdb7a50dSMatthew G. Knepley PetscBool ishdf5; 6407cdb7a50dSMatthew G. Knepley 6408cdb7a50dSMatthew G. Knepley PetscFunctionBegin; 6409cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6410cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 6411064a246eSJacob Faibussowitsch PetscValidRealPointer(val, 5); 64129566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 6413cdb7a50dSMatthew G. Knepley if (ishdf5) { 6414cdb7a50dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 6415cdb7a50dSMatthew G. Knepley PetscScalar value; 6416cdb7a50dSMatthew G. Knepley 64179566063dSJacob Faibussowitsch PetscCall(DMSequenceLoad_HDF5_Internal(dm, name, num, &value, viewer)); 64184aeb217fSMatthew G. Knepley *val = PetscRealPart(value); 6419cdb7a50dSMatthew G. Knepley #endif 6420cdb7a50dSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()"); 6421f4d763aaSMatthew G. Knepley PetscFunctionReturn(0); 6422f4d763aaSMatthew G. Knepley } 64238e4ac7eaSMatthew G. Knepley 64248e4ac7eaSMatthew G. Knepley /*@ 6425bb7acecfSBarry Smith DMGetUseNatural - Get the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 64268e4ac7eaSMatthew G. Knepley 64278e4ac7eaSMatthew G. Knepley Not collective 64288e4ac7eaSMatthew G. Knepley 64298e4ac7eaSMatthew G. Knepley Input Parameter: 6430bb7acecfSBarry Smith . dm - The `DM` 64318e4ac7eaSMatthew G. Knepley 64328e4ac7eaSMatthew G. Knepley Output Parameter: 6433bb7acecfSBarry Smith . useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 64348e4ac7eaSMatthew G. Knepley 64358e4ac7eaSMatthew G. Knepley Level: beginner 64368e4ac7eaSMatthew G. Knepley 6437db781477SPatrick Sanan .seealso: `DMSetUseNatural()`, `DMCreate()` 64388e4ac7eaSMatthew G. Knepley @*/ 6439d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetUseNatural(DM dm, PetscBool *useNatural) 6440d71ae5a4SJacob Faibussowitsch { 64418e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 64428e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6443534a8f05SLisandro Dalcin PetscValidBoolPointer(useNatural, 2); 64448e4ac7eaSMatthew G. Knepley *useNatural = dm->useNatural; 64458e4ac7eaSMatthew G. Knepley PetscFunctionReturn(0); 64468e4ac7eaSMatthew G. Knepley } 64478e4ac7eaSMatthew G. Knepley 64488e4ac7eaSMatthew G. Knepley /*@ 6449bb7acecfSBarry Smith DMSetUseNatural - Set the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 64508e4ac7eaSMatthew G. Knepley 64518e4ac7eaSMatthew G. Knepley Collective on dm 64528e4ac7eaSMatthew G. Knepley 64538e4ac7eaSMatthew G. Knepley Input Parameters: 6454bb7acecfSBarry Smith + dm - The `DM` 6455bb7acecfSBarry Smith - useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 64568e4ac7eaSMatthew G. Knepley 6457bb7acecfSBarry Smith Note: 6458bb7acecfSBarry Smith This also causes the map to be build after `DMCreateSubDM()` and `DMCreateSuperDM()` 64595d3b26e6SMatthew G. Knepley 64608e4ac7eaSMatthew G. Knepley Level: beginner 64618e4ac7eaSMatthew G. Knepley 6462db781477SPatrick Sanan .seealso: `DMGetUseNatural()`, `DMCreate()`, `DMPlexDistribute()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 64638e4ac7eaSMatthew G. Knepley @*/ 6464d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUseNatural(DM dm, PetscBool useNatural) 6465d71ae5a4SJacob Faibussowitsch { 64668e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 64678e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64688833efb5SBlaise Bourdin PetscValidLogicalCollectiveBool(dm, useNatural, 2); 64698e4ac7eaSMatthew G. Knepley dm->useNatural = useNatural; 64708e4ac7eaSMatthew G. Knepley PetscFunctionReturn(0); 64718e4ac7eaSMatthew G. Knepley } 6472c58f1c22SToby Isaac 6473c58f1c22SToby Isaac /*@C 6474bb7acecfSBarry Smith DMCreateLabel - Create a label of the given name if it does not already exist in the `DM` 6475c58f1c22SToby Isaac 6476c58f1c22SToby Isaac Not Collective 6477c58f1c22SToby Isaac 6478c58f1c22SToby Isaac Input Parameters: 6479bb7acecfSBarry Smith + dm - The `DM` object 6480c58f1c22SToby Isaac - name - The label name 6481c58f1c22SToby Isaac 6482c58f1c22SToby Isaac Level: intermediate 6483c58f1c22SToby Isaac 6484db781477SPatrick Sanan .seealso: `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6485c58f1c22SToby Isaac @*/ 6486d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabel(DM dm, const char name[]) 6487d71ae5a4SJacob Faibussowitsch { 64885d80c0bfSVaclav Hapla PetscBool flg; 64895d80c0bfSVaclav Hapla DMLabel label; 6490c58f1c22SToby Isaac 6491c58f1c22SToby Isaac PetscFunctionBegin; 6492c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6493c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 64949566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 6495c58f1c22SToby Isaac if (!flg) { 64969566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 64979566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 64989566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 6499c58f1c22SToby Isaac } 6500c58f1c22SToby Isaac PetscFunctionReturn(0); 6501c58f1c22SToby Isaac } 6502c58f1c22SToby Isaac 6503c58f1c22SToby Isaac /*@C 6504bb7acecfSBarry Smith DMCreateLabelAtIndex - Create a label of the given name at the given index. If it already exists in the `DM`, move it to this index. 65050fdc7489SMatthew Knepley 65060fdc7489SMatthew Knepley Not Collective 65070fdc7489SMatthew Knepley 65080fdc7489SMatthew Knepley Input Parameters: 6509bb7acecfSBarry Smith + dm - The `DM` object 65100fdc7489SMatthew Knepley . l - The index for the label 65110fdc7489SMatthew Knepley - name - The label name 65120fdc7489SMatthew Knepley 65130fdc7489SMatthew Knepley Level: intermediate 65140fdc7489SMatthew Knepley 6515db781477SPatrick Sanan .seealso: `DMCreateLabel()`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 65160fdc7489SMatthew Knepley @*/ 6517d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabelAtIndex(DM dm, PetscInt l, const char name[]) 6518d71ae5a4SJacob Faibussowitsch { 65190fdc7489SMatthew Knepley DMLabelLink orig, prev = NULL; 65200fdc7489SMatthew Knepley DMLabel label; 65210fdc7489SMatthew Knepley PetscInt Nl, m; 65220fdc7489SMatthew Knepley PetscBool flg, match; 65230fdc7489SMatthew Knepley const char *lname; 65240fdc7489SMatthew Knepley 65250fdc7489SMatthew Knepley PetscFunctionBegin; 65260fdc7489SMatthew Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6527064a246eSJacob Faibussowitsch PetscValidCharPointer(name, 3); 65289566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 65290fdc7489SMatthew Knepley if (!flg) { 65309566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 65319566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 65329566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 65330fdc7489SMatthew Knepley } 65349566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 653563a3b9bcSJacob Faibussowitsch PetscCheck(l < Nl, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label index %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", l, Nl); 65360fdc7489SMatthew Knepley for (m = 0, orig = dm->labels; m < Nl; ++m, prev = orig, orig = orig->next) { 65379566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)orig->label, &lname)); 65389566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &match)); 65390fdc7489SMatthew Knepley if (match) break; 65400fdc7489SMatthew Knepley } 65410fdc7489SMatthew Knepley if (m == l) PetscFunctionReturn(0); 65420fdc7489SMatthew Knepley if (!m) dm->labels = orig->next; 65430fdc7489SMatthew Knepley else prev->next = orig->next; 65440fdc7489SMatthew Knepley if (!l) { 65450fdc7489SMatthew Knepley orig->next = dm->labels; 65460fdc7489SMatthew Knepley dm->labels = orig; 65470fdc7489SMatthew Knepley } else { 65489371c9d4SSatish Balay for (m = 0, prev = dm->labels; m < l - 1; ++m, prev = prev->next) 65499371c9d4SSatish Balay ; 65500fdc7489SMatthew Knepley orig->next = prev->next; 65510fdc7489SMatthew Knepley prev->next = orig; 65520fdc7489SMatthew Knepley } 65530fdc7489SMatthew Knepley PetscFunctionReturn(0); 65540fdc7489SMatthew Knepley } 65550fdc7489SMatthew Knepley 65560fdc7489SMatthew Knepley /*@C 6557bb7acecfSBarry Smith DMGetLabelValue - Get the value in a `DMLabel` for the given point, with -1 as the default 6558c58f1c22SToby Isaac 6559c58f1c22SToby Isaac Not Collective 6560c58f1c22SToby Isaac 6561c58f1c22SToby Isaac Input Parameters: 6562bb7acecfSBarry Smith + dm - The `DM` object 6563c58f1c22SToby Isaac . name - The label name 6564c58f1c22SToby Isaac - point - The mesh point 6565c58f1c22SToby Isaac 6566c58f1c22SToby Isaac Output Parameter: 6567c58f1c22SToby Isaac . value - The label value for this point, or -1 if the point is not in the label 6568c58f1c22SToby Isaac 6569c58f1c22SToby Isaac Level: beginner 6570c58f1c22SToby Isaac 6571db781477SPatrick Sanan .seealso: `DMLabelGetValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6572c58f1c22SToby Isaac @*/ 6573d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelValue(DM dm, const char name[], PetscInt point, PetscInt *value) 6574d71ae5a4SJacob Faibussowitsch { 6575c58f1c22SToby Isaac DMLabel label; 6576c58f1c22SToby Isaac 6577c58f1c22SToby Isaac PetscFunctionBegin; 6578c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6579c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 65809566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 65817a8be351SBarry Smith PetscCheck(label, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No label named %s was found", name); 65829566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, value)); 6583c58f1c22SToby Isaac PetscFunctionReturn(0); 6584c58f1c22SToby Isaac } 6585c58f1c22SToby Isaac 6586c58f1c22SToby Isaac /*@C 6587bb7acecfSBarry Smith DMSetLabelValue - Add a point to a `DMLabel` with given value 6588c58f1c22SToby Isaac 6589c58f1c22SToby Isaac Not Collective 6590c58f1c22SToby Isaac 6591c58f1c22SToby Isaac Input Parameters: 6592bb7acecfSBarry Smith + dm - The `DM` object 6593c58f1c22SToby Isaac . name - The label name 6594c58f1c22SToby Isaac . point - The mesh point 6595c58f1c22SToby Isaac - value - The label value for this point 6596c58f1c22SToby Isaac 6597c58f1c22SToby Isaac Output Parameter: 6598c58f1c22SToby Isaac 6599c58f1c22SToby Isaac Level: beginner 6600c58f1c22SToby Isaac 6601db781477SPatrick Sanan .seealso: `DMLabelSetValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 6602c58f1c22SToby Isaac @*/ 6603d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6604d71ae5a4SJacob Faibussowitsch { 6605c58f1c22SToby Isaac DMLabel label; 6606c58f1c22SToby Isaac 6607c58f1c22SToby Isaac PetscFunctionBegin; 6608c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6609c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 66109566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6611c58f1c22SToby Isaac if (!label) { 66129566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 66139566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6614c58f1c22SToby Isaac } 66159566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, value)); 6616c58f1c22SToby Isaac PetscFunctionReturn(0); 6617c58f1c22SToby Isaac } 6618c58f1c22SToby Isaac 6619c58f1c22SToby Isaac /*@C 6620bb7acecfSBarry Smith DMClearLabelValue - Remove a point from a `DMLabel` with given value 6621c58f1c22SToby Isaac 6622c58f1c22SToby Isaac Not Collective 6623c58f1c22SToby Isaac 6624c58f1c22SToby Isaac Input Parameters: 6625bb7acecfSBarry Smith + dm - The `DM` object 6626c58f1c22SToby Isaac . name - The label name 6627c58f1c22SToby Isaac . point - The mesh point 6628c58f1c22SToby Isaac - value - The label value for this point 6629c58f1c22SToby Isaac 6630c58f1c22SToby Isaac Level: beginner 6631c58f1c22SToby Isaac 6632db781477SPatrick Sanan .seealso: `DMLabelClearValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6633c58f1c22SToby Isaac @*/ 6634d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6635d71ae5a4SJacob Faibussowitsch { 6636c58f1c22SToby Isaac DMLabel label; 6637c58f1c22SToby Isaac 6638c58f1c22SToby Isaac PetscFunctionBegin; 6639c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6640c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 66419566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6642c58f1c22SToby Isaac if (!label) PetscFunctionReturn(0); 66439566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, value)); 6644c58f1c22SToby Isaac PetscFunctionReturn(0); 6645c58f1c22SToby Isaac } 6646c58f1c22SToby Isaac 6647c58f1c22SToby Isaac /*@C 6648bb7acecfSBarry Smith DMGetLabelSize - Get the value of `DMLabelGetNumValues()` of a `DMLabel` in the `DM` 6649c58f1c22SToby Isaac 6650c58f1c22SToby Isaac Not Collective 6651c58f1c22SToby Isaac 6652c58f1c22SToby Isaac Input Parameters: 6653bb7acecfSBarry Smith + dm - The `DM` object 6654c58f1c22SToby Isaac - name - The label name 6655c58f1c22SToby Isaac 6656c58f1c22SToby Isaac Output Parameter: 6657c58f1c22SToby Isaac . size - The number of different integer ids, or 0 if the label does not exist 6658c58f1c22SToby Isaac 6659c58f1c22SToby Isaac Level: beginner 6660c58f1c22SToby Isaac 6661bb7acecfSBarry Smith Developer Note: 6662bb7acecfSBarry Smith This should be renamed to something like `DMGetLabelNumValues()` or removed. 6663bb7acecfSBarry Smith 6664bb7acecfSBarry Smith .seealso: `DMLabelGetNumValues()`, `DMSetLabelValue()`, `DMGetLabel()` 6665c58f1c22SToby Isaac @*/ 6666d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelSize(DM dm, const char name[], PetscInt *size) 6667d71ae5a4SJacob Faibussowitsch { 6668c58f1c22SToby Isaac DMLabel label; 6669c58f1c22SToby Isaac 6670c58f1c22SToby Isaac PetscFunctionBegin; 6671c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6672c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 6673534a8f05SLisandro Dalcin PetscValidIntPointer(size, 3); 66749566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6675c58f1c22SToby Isaac *size = 0; 6676c58f1c22SToby Isaac if (!label) PetscFunctionReturn(0); 66779566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, size)); 6678c58f1c22SToby Isaac PetscFunctionReturn(0); 6679c58f1c22SToby Isaac } 6680c58f1c22SToby Isaac 6681c58f1c22SToby Isaac /*@C 6682bb7acecfSBarry Smith DMGetLabelIdIS - Get the `DMLabelGetValueIS()` from a `DMLabel` in the `DM` 6683c58f1c22SToby Isaac 6684c58f1c22SToby Isaac Not Collective 6685c58f1c22SToby Isaac 6686c58f1c22SToby Isaac Input Parameters: 6687bb7acecfSBarry Smith + mesh - The `DM` object 6688c58f1c22SToby Isaac - name - The label name 6689c58f1c22SToby Isaac 6690c58f1c22SToby Isaac Output Parameter: 6691c58f1c22SToby Isaac . ids - The integer ids, or NULL if the label does not exist 6692c58f1c22SToby Isaac 6693c58f1c22SToby Isaac Level: beginner 6694c58f1c22SToby Isaac 6695db781477SPatrick Sanan .seealso: `DMLabelGetValueIS()`, `DMGetLabelSize()` 6696c58f1c22SToby Isaac @*/ 6697d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelIdIS(DM dm, const char name[], IS *ids) 6698d71ae5a4SJacob Faibussowitsch { 6699c58f1c22SToby Isaac DMLabel label; 6700c58f1c22SToby Isaac 6701c58f1c22SToby Isaac PetscFunctionBegin; 6702c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6703c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 6704c58f1c22SToby Isaac PetscValidPointer(ids, 3); 67059566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6706c58f1c22SToby Isaac *ids = NULL; 6707dab2e251SBlaise Bourdin if (label) { 67089566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, ids)); 6709dab2e251SBlaise Bourdin } else { 6710dab2e251SBlaise Bourdin /* returning an empty IS */ 67119566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_USE_POINTER, ids)); 6712dab2e251SBlaise Bourdin } 6713c58f1c22SToby Isaac PetscFunctionReturn(0); 6714c58f1c22SToby Isaac } 6715c58f1c22SToby Isaac 6716c58f1c22SToby Isaac /*@C 6717c58f1c22SToby Isaac DMGetStratumSize - Get the number of points in a label stratum 6718c58f1c22SToby Isaac 6719c58f1c22SToby Isaac Not Collective 6720c58f1c22SToby Isaac 6721c58f1c22SToby Isaac Input Parameters: 6722bb7acecfSBarry Smith + dm - The `DM` object 6723c58f1c22SToby Isaac . name - The label name 6724c58f1c22SToby Isaac - value - The stratum value 6725c58f1c22SToby Isaac 6726c58f1c22SToby Isaac Output Parameter: 6727bb7acecfSBarry Smith . size - The number of points, also called the stratum size 6728c58f1c22SToby Isaac 6729c58f1c22SToby Isaac Level: beginner 6730c58f1c22SToby Isaac 6731db781477SPatrick Sanan .seealso: `DMLabelGetStratumSize()`, `DMGetLabelSize()`, `DMGetLabelIds()` 6732c58f1c22SToby Isaac @*/ 6733d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumSize(DM dm, const char name[], PetscInt value, PetscInt *size) 6734d71ae5a4SJacob Faibussowitsch { 6735c58f1c22SToby Isaac DMLabel label; 6736c58f1c22SToby Isaac 6737c58f1c22SToby Isaac PetscFunctionBegin; 6738c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6739c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 6740534a8f05SLisandro Dalcin PetscValidIntPointer(size, 4); 67419566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6742c58f1c22SToby Isaac *size = 0; 6743c58f1c22SToby Isaac if (!label) PetscFunctionReturn(0); 67449566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, value, size)); 6745c58f1c22SToby Isaac PetscFunctionReturn(0); 6746c58f1c22SToby Isaac } 6747c58f1c22SToby Isaac 6748c58f1c22SToby Isaac /*@C 6749c58f1c22SToby Isaac DMGetStratumIS - Get the points in a label stratum 6750c58f1c22SToby Isaac 6751c58f1c22SToby Isaac Not Collective 6752c58f1c22SToby Isaac 6753c58f1c22SToby Isaac Input Parameters: 6754bb7acecfSBarry Smith + dm - The `DM` object 6755c58f1c22SToby Isaac . name - The label name 6756c58f1c22SToby Isaac - value - The stratum value 6757c58f1c22SToby Isaac 6758c58f1c22SToby Isaac Output Parameter: 6759c58f1c22SToby Isaac . points - The stratum points, or NULL if the label does not exist or does not have that value 6760c58f1c22SToby Isaac 6761c58f1c22SToby Isaac Level: beginner 6762c58f1c22SToby Isaac 6763db781477SPatrick Sanan .seealso: `DMLabelGetStratumIS()`, `DMGetStratumSize()` 6764c58f1c22SToby Isaac @*/ 6765d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumIS(DM dm, const char name[], PetscInt value, IS *points) 6766d71ae5a4SJacob Faibussowitsch { 6767c58f1c22SToby Isaac DMLabel label; 6768c58f1c22SToby Isaac 6769c58f1c22SToby Isaac PetscFunctionBegin; 6770c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6771c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 6772c58f1c22SToby Isaac PetscValidPointer(points, 4); 67739566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6774c58f1c22SToby Isaac *points = NULL; 6775c58f1c22SToby Isaac if (!label) PetscFunctionReturn(0); 67769566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, value, points)); 6777c58f1c22SToby Isaac PetscFunctionReturn(0); 6778c58f1c22SToby Isaac } 6779c58f1c22SToby Isaac 67804de306b1SToby Isaac /*@C 67819044fa66SMatthew G. Knepley DMSetStratumIS - Set the points in a label stratum 67824de306b1SToby Isaac 67834de306b1SToby Isaac Not Collective 67844de306b1SToby Isaac 67854de306b1SToby Isaac Input Parameters: 6786bb7acecfSBarry Smith + dm - The `DM` object 67874de306b1SToby Isaac . name - The label name 67884de306b1SToby Isaac . value - The stratum value 67894de306b1SToby Isaac - points - The stratum points 67904de306b1SToby Isaac 67914de306b1SToby Isaac Level: beginner 67924de306b1SToby Isaac 6793bb7acecfSBarry Smith .seealso: `DMLabel`, `DMClearLabelStratum()`, `DMLabelClearStratum()`, `DMLabelSetStratumIS()`, `DMGetStratumSize()` 67944de306b1SToby Isaac @*/ 6795d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetStratumIS(DM dm, const char name[], PetscInt value, IS points) 6796d71ae5a4SJacob Faibussowitsch { 67974de306b1SToby Isaac DMLabel label; 67984de306b1SToby Isaac 67994de306b1SToby Isaac PetscFunctionBegin; 68004de306b1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68014de306b1SToby Isaac PetscValidCharPointer(name, 2); 68024de306b1SToby Isaac PetscValidPointer(points, 4); 68039566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 68044de306b1SToby Isaac if (!label) PetscFunctionReturn(0); 68059566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(label, value, points)); 68064de306b1SToby Isaac PetscFunctionReturn(0); 68074de306b1SToby Isaac } 68084de306b1SToby Isaac 6809c58f1c22SToby Isaac /*@C 6810bb7acecfSBarry Smith DMClearLabelStratum - Remove all points from a stratum from a `DMLabel` 6811c58f1c22SToby Isaac 6812c58f1c22SToby Isaac Not Collective 6813c58f1c22SToby Isaac 6814c58f1c22SToby Isaac Input Parameters: 6815bb7acecfSBarry Smith + dm - The `DM` object 6816c58f1c22SToby Isaac . name - The label name 6817c58f1c22SToby Isaac - value - The label value for this point 6818c58f1c22SToby Isaac 6819c58f1c22SToby Isaac Output Parameter: 6820c58f1c22SToby Isaac 6821c58f1c22SToby Isaac Level: beginner 6822c58f1c22SToby Isaac 6823bb7acecfSBarry Smith .seealso: `DMLabel`, `DMLabelClearStratum()`, `DMSetLabelValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 6824c58f1c22SToby Isaac @*/ 6825d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelStratum(DM dm, const char name[], PetscInt value) 6826d71ae5a4SJacob Faibussowitsch { 6827c58f1c22SToby Isaac DMLabel label; 6828c58f1c22SToby Isaac 6829c58f1c22SToby Isaac PetscFunctionBegin; 6830c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6831c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 68329566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6833c58f1c22SToby Isaac if (!label) PetscFunctionReturn(0); 68349566063dSJacob Faibussowitsch PetscCall(DMLabelClearStratum(label, value)); 6835c58f1c22SToby Isaac PetscFunctionReturn(0); 6836c58f1c22SToby Isaac } 6837c58f1c22SToby Isaac 6838c58f1c22SToby Isaac /*@ 6839bb7acecfSBarry Smith DMGetNumLabels - Return the number of labels defined by on the `DM` 6840c58f1c22SToby Isaac 6841c58f1c22SToby Isaac Not Collective 6842c58f1c22SToby Isaac 6843c58f1c22SToby Isaac Input Parameter: 6844bb7acecfSBarry Smith . dm - The `DM` object 6845c58f1c22SToby Isaac 6846c58f1c22SToby Isaac Output Parameter: 6847c58f1c22SToby Isaac . numLabels - the number of Labels 6848c58f1c22SToby Isaac 6849c58f1c22SToby Isaac Level: intermediate 6850c58f1c22SToby Isaac 6851bb7acecfSBarry Smith .seealso: `DMLabel`, `DMGetLabelByNum()`, `DMGetLabelName()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6852c58f1c22SToby Isaac @*/ 6853d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumLabels(DM dm, PetscInt *numLabels) 6854d71ae5a4SJacob Faibussowitsch { 68555d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 6856c58f1c22SToby Isaac PetscInt n = 0; 6857c58f1c22SToby Isaac 6858c58f1c22SToby Isaac PetscFunctionBegin; 6859c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6860534a8f05SLisandro Dalcin PetscValidIntPointer(numLabels, 2); 68619371c9d4SSatish Balay while (next) { 68629371c9d4SSatish Balay ++n; 68639371c9d4SSatish Balay next = next->next; 68649371c9d4SSatish Balay } 6865c58f1c22SToby Isaac *numLabels = n; 6866c58f1c22SToby Isaac PetscFunctionReturn(0); 6867c58f1c22SToby Isaac } 6868c58f1c22SToby Isaac 6869c58f1c22SToby Isaac /*@C 6870c58f1c22SToby Isaac DMGetLabelName - Return the name of nth label 6871c58f1c22SToby Isaac 6872c58f1c22SToby Isaac Not Collective 6873c58f1c22SToby Isaac 6874c58f1c22SToby Isaac Input Parameters: 6875bb7acecfSBarry Smith + dm - The `DM` object 6876c58f1c22SToby Isaac - n - the label number 6877c58f1c22SToby Isaac 6878c58f1c22SToby Isaac Output Parameter: 6879c58f1c22SToby Isaac . name - the label name 6880c58f1c22SToby Isaac 6881c58f1c22SToby Isaac Level: intermediate 6882c58f1c22SToby Isaac 6883bb7acecfSBarry Smith Developer Note: 6884bb7acecfSBarry Smith Some of the functions that appropriate on labels using their number have the suffix ByNum, others do not. 6885bb7acecfSBarry Smith 6886bb7acecfSBarry Smith .seealso: `DMLabel`, `DMGetLabelByNum()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6887c58f1c22SToby Isaac @*/ 6888d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelName(DM dm, PetscInt n, const char **name) 6889d71ae5a4SJacob Faibussowitsch { 68905d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 6891c58f1c22SToby Isaac PetscInt l = 0; 6892c58f1c22SToby Isaac 6893c58f1c22SToby Isaac PetscFunctionBegin; 6894c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6895c58f1c22SToby Isaac PetscValidPointer(name, 3); 6896c58f1c22SToby Isaac while (next) { 6897c58f1c22SToby Isaac if (l == n) { 68989566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, name)); 6899c58f1c22SToby Isaac PetscFunctionReturn(0); 6900c58f1c22SToby Isaac } 6901c58f1c22SToby Isaac ++l; 6902c58f1c22SToby Isaac next = next->next; 6903c58f1c22SToby Isaac } 690463a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 6905c58f1c22SToby Isaac } 6906c58f1c22SToby Isaac 6907c58f1c22SToby Isaac /*@C 6908bb7acecfSBarry Smith DMHasLabel - Determine whether the `DM` has a label of a given name 6909c58f1c22SToby Isaac 6910c58f1c22SToby Isaac Not Collective 6911c58f1c22SToby Isaac 6912c58f1c22SToby Isaac Input Parameters: 6913bb7acecfSBarry Smith + dm - The `DM` object 6914c58f1c22SToby Isaac - name - The label name 6915c58f1c22SToby Isaac 6916c58f1c22SToby Isaac Output Parameter: 6917bb7acecfSBarry Smith . hasLabel - `PETSC_TRUE` if the label is present 6918c58f1c22SToby Isaac 6919c58f1c22SToby Isaac Level: intermediate 6920c58f1c22SToby Isaac 6921bb7acecfSBarry Smith .seealso: `DMLabel`, `DMGetLabel()`, `DMGetLabelByNum()`, `DMCreateLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6922c58f1c22SToby Isaac @*/ 6923d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasLabel(DM dm, const char name[], PetscBool *hasLabel) 6924d71ae5a4SJacob Faibussowitsch { 69255d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 6926d67d17b1SMatthew G. Knepley const char *lname; 6927c58f1c22SToby Isaac 6928c58f1c22SToby Isaac PetscFunctionBegin; 6929c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6930c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 6931534a8f05SLisandro Dalcin PetscValidBoolPointer(hasLabel, 3); 6932c58f1c22SToby Isaac *hasLabel = PETSC_FALSE; 6933c58f1c22SToby Isaac while (next) { 69349566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 69359566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, hasLabel)); 6936c58f1c22SToby Isaac if (*hasLabel) break; 6937c58f1c22SToby Isaac next = next->next; 6938c58f1c22SToby Isaac } 6939c58f1c22SToby Isaac PetscFunctionReturn(0); 6940c58f1c22SToby Isaac } 6941c58f1c22SToby Isaac 6942c58f1c22SToby Isaac /*@C 6943bb7acecfSBarry Smith DMGetLabel - Return the label of a given name, or NULL, from a `DM` 6944c58f1c22SToby Isaac 6945c58f1c22SToby Isaac Not Collective 6946c58f1c22SToby Isaac 6947c58f1c22SToby Isaac Input Parameters: 6948bb7acecfSBarry Smith + dm - The `DM` object 6949c58f1c22SToby Isaac - name - The label name 6950c58f1c22SToby Isaac 6951c58f1c22SToby Isaac Output Parameter: 6952bb7acecfSBarry Smith . label - The `DMLabel`, or NULL if the label is absent 6953c58f1c22SToby Isaac 6954bb7acecfSBarry Smith Default labels in a `DMPLEX`: 6955bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 6956bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 6957bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 6958bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 6959bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 6960bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 69616d7c9049SMatthew G. Knepley 6962c58f1c22SToby Isaac Level: intermediate 6963c58f1c22SToby Isaac 6964bb7acecfSBarry Smith .seealso: `DMLabel`, `DMHasLabel()`, `DMGetLabelByNum()`, `DMAddLabel()`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 6965c58f1c22SToby Isaac @*/ 6966d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabel(DM dm, const char name[], DMLabel *label) 6967d71ae5a4SJacob Faibussowitsch { 69685d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 6969c58f1c22SToby Isaac PetscBool hasLabel; 6970d67d17b1SMatthew G. Knepley const char *lname; 6971c58f1c22SToby Isaac 6972c58f1c22SToby Isaac PetscFunctionBegin; 6973c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6974c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 6975c58f1c22SToby Isaac PetscValidPointer(label, 3); 6976c58f1c22SToby Isaac *label = NULL; 6977c58f1c22SToby Isaac while (next) { 69789566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 69799566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 6980c58f1c22SToby Isaac if (hasLabel) { 6981c58f1c22SToby Isaac *label = next->label; 6982c58f1c22SToby Isaac break; 6983c58f1c22SToby Isaac } 6984c58f1c22SToby Isaac next = next->next; 6985c58f1c22SToby Isaac } 6986c58f1c22SToby Isaac PetscFunctionReturn(0); 6987c58f1c22SToby Isaac } 6988c58f1c22SToby Isaac 6989c58f1c22SToby Isaac /*@C 6990bb7acecfSBarry Smith DMGetLabelByNum - Return the nth label on a `DM` 6991c58f1c22SToby Isaac 6992c58f1c22SToby Isaac Not Collective 6993c58f1c22SToby Isaac 6994c58f1c22SToby Isaac Input Parameters: 6995bb7acecfSBarry Smith + dm - The `DM` object 6996c58f1c22SToby Isaac - n - the label number 6997c58f1c22SToby Isaac 6998c58f1c22SToby Isaac Output Parameter: 6999c58f1c22SToby Isaac . label - the label 7000c58f1c22SToby Isaac 7001c58f1c22SToby Isaac Level: intermediate 7002c58f1c22SToby Isaac 7003bb7acecfSBarry Smith .seealso: `DMLabel`, `DMAddLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7004c58f1c22SToby Isaac @*/ 7005d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelByNum(DM dm, PetscInt n, DMLabel *label) 7006d71ae5a4SJacob Faibussowitsch { 70075d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7008c58f1c22SToby Isaac PetscInt l = 0; 7009c58f1c22SToby Isaac 7010c58f1c22SToby Isaac PetscFunctionBegin; 7011c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7012c58f1c22SToby Isaac PetscValidPointer(label, 3); 7013c58f1c22SToby Isaac while (next) { 7014c58f1c22SToby Isaac if (l == n) { 7015c58f1c22SToby Isaac *label = next->label; 7016c58f1c22SToby Isaac PetscFunctionReturn(0); 7017c58f1c22SToby Isaac } 7018c58f1c22SToby Isaac ++l; 7019c58f1c22SToby Isaac next = next->next; 7020c58f1c22SToby Isaac } 702163a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 7022c58f1c22SToby Isaac } 7023c58f1c22SToby Isaac 7024c58f1c22SToby Isaac /*@C 7025bb7acecfSBarry Smith DMAddLabel - Add the label to this `DM` 7026c58f1c22SToby Isaac 7027c58f1c22SToby Isaac Not Collective 7028c58f1c22SToby Isaac 7029c58f1c22SToby Isaac Input Parameters: 7030bb7acecfSBarry Smith + dm - The `DM` object 7031bb7acecfSBarry Smith - label - The `DMLabel` 7032c58f1c22SToby Isaac 7033c58f1c22SToby Isaac Level: developer 7034c58f1c22SToby Isaac 7035bb7acecfSBarry Smith .seealso: `DMLabel`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7036c58f1c22SToby Isaac @*/ 7037d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddLabel(DM dm, DMLabel label) 7038d71ae5a4SJacob Faibussowitsch { 70395d80c0bfSVaclav Hapla DMLabelLink l, *p, tmpLabel; 7040c58f1c22SToby Isaac PetscBool hasLabel; 7041d67d17b1SMatthew G. Knepley const char *lname; 70425d80c0bfSVaclav Hapla PetscBool flg; 7043c58f1c22SToby Isaac 7044c58f1c22SToby Isaac PetscFunctionBegin; 7045c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70469566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &lname)); 70479566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, lname, &hasLabel)); 70487a8be351SBarry Smith PetscCheck(!hasLabel, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in this DM", lname); 70499566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(1, &tmpLabel)); 7050c58f1c22SToby Isaac tmpLabel->label = label; 7051c58f1c22SToby Isaac tmpLabel->output = PETSC_TRUE; 70525d80c0bfSVaclav Hapla for (p = &dm->labels; (l = *p); p = &l->next) { } 70535d80c0bfSVaclav Hapla *p = tmpLabel; 70549566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 70559566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 70565d80c0bfSVaclav Hapla if (flg) dm->depthLabel = label; 70579566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 7058ba2698f1SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 7059c58f1c22SToby Isaac PetscFunctionReturn(0); 7060c58f1c22SToby Isaac } 7061c58f1c22SToby Isaac 7062c58f1c22SToby Isaac /*@C 70634a7ee7d0SMatthew G. Knepley DMSetLabel - Replaces the label of a given name, or ignores it if the name is not present 70644a7ee7d0SMatthew G. Knepley 70654a7ee7d0SMatthew G. Knepley Not Collective 70664a7ee7d0SMatthew G. Knepley 70674a7ee7d0SMatthew G. Knepley Input Parameters: 7068bb7acecfSBarry Smith + dm - The `DM` object 7069bb7acecfSBarry Smith - label - The `DMLabel`, having the same name, to substitute 70704a7ee7d0SMatthew G. Knepley 7071bb7acecfSBarry Smith Default labels in a `DMPLEX`: 7072bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 7073bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 7074bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 7075bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 7076bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 7077bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 70784a7ee7d0SMatthew G. Knepley 70794a7ee7d0SMatthew G. Knepley Level: intermediate 70804a7ee7d0SMatthew G. Knepley 7081bb7acecfSBarry Smith .seealso: `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 70824a7ee7d0SMatthew G. Knepley @*/ 7083d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabel(DM dm, DMLabel label) 7084d71ae5a4SJacob Faibussowitsch { 70854a7ee7d0SMatthew G. Knepley DMLabelLink next = dm->labels; 70864a7ee7d0SMatthew G. Knepley PetscBool hasLabel, flg; 70874a7ee7d0SMatthew G. Knepley const char *name, *lname; 70884a7ee7d0SMatthew G. Knepley 70894a7ee7d0SMatthew G. Knepley PetscFunctionBegin; 70904a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70914a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 70929566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 70934a7ee7d0SMatthew G. Knepley while (next) { 70949566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 70959566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 70964a7ee7d0SMatthew G. Knepley if (hasLabel) { 70979566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 70989566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 70994a7ee7d0SMatthew G. Knepley if (flg) dm->depthLabel = label; 71009566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 71014a7ee7d0SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 71029566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 71034a7ee7d0SMatthew G. Knepley next->label = label; 71044a7ee7d0SMatthew G. Knepley break; 71054a7ee7d0SMatthew G. Knepley } 71064a7ee7d0SMatthew G. Knepley next = next->next; 71074a7ee7d0SMatthew G. Knepley } 71084a7ee7d0SMatthew G. Knepley PetscFunctionReturn(0); 71094a7ee7d0SMatthew G. Knepley } 71104a7ee7d0SMatthew G. Knepley 71114a7ee7d0SMatthew G. Knepley /*@C 7112bb7acecfSBarry Smith DMRemoveLabel - Remove the label given by name from this `DM` 7113c58f1c22SToby Isaac 7114c58f1c22SToby Isaac Not Collective 7115c58f1c22SToby Isaac 7116c58f1c22SToby Isaac Input Parameters: 7117bb7acecfSBarry Smith + dm - The `DM` object 7118c58f1c22SToby Isaac - name - The label name 7119c58f1c22SToby Isaac 7120c58f1c22SToby Isaac Output Parameter: 7121bb7acecfSBarry Smith . label - The `DMLabel`, or NULL if the label is absent. Pass in NULL to call `DMLabelDestroy()` on the label, otherwise the 7122bb7acecfSBarry Smith caller is responsible for calling `DMLabelDestroy()`. 7123c58f1c22SToby Isaac 7124c58f1c22SToby Isaac Level: developer 7125c58f1c22SToby Isaac 7126bb7acecfSBarry Smith .seealso: `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabelBySelf()` 7127c58f1c22SToby Isaac @*/ 7128d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabel(DM dm, const char name[], DMLabel *label) 7129d71ae5a4SJacob Faibussowitsch { 713095d578d6SVaclav Hapla DMLabelLink link, *pnext; 7131c58f1c22SToby Isaac PetscBool hasLabel; 7132d67d17b1SMatthew G. Knepley const char *lname; 7133c58f1c22SToby Isaac 7134c58f1c22SToby Isaac PetscFunctionBegin; 7135c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7136e5472504SVaclav Hapla PetscValidCharPointer(name, 2); 7137e5472504SVaclav Hapla if (label) { 7138e5472504SVaclav Hapla PetscValidPointer(label, 3); 7139c58f1c22SToby Isaac *label = NULL; 7140e5472504SVaclav Hapla } 71415d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 71429566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)link->label, &lname)); 71439566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 7144c58f1c22SToby Isaac if (hasLabel) { 714595d578d6SVaclav Hapla *pnext = link->next; /* Remove from list */ 71469566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &hasLabel)); 714795d578d6SVaclav Hapla if (hasLabel) dm->depthLabel = NULL; 71489566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &hasLabel)); 7149ba2698f1SMatthew G. Knepley if (hasLabel) dm->celltypeLabel = NULL; 715095d578d6SVaclav Hapla if (label) *label = link->label; 71519566063dSJacob Faibussowitsch else PetscCall(DMLabelDestroy(&link->label)); 71529566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7153c58f1c22SToby Isaac break; 7154c58f1c22SToby Isaac } 7155c58f1c22SToby Isaac } 7156c58f1c22SToby Isaac PetscFunctionReturn(0); 7157c58f1c22SToby Isaac } 7158c58f1c22SToby Isaac 7159306894acSVaclav Hapla /*@ 7160bb7acecfSBarry Smith DMRemoveLabelBySelf - Remove the label from this `DM` 7161306894acSVaclav Hapla 7162306894acSVaclav Hapla Not Collective 7163306894acSVaclav Hapla 7164306894acSVaclav Hapla Input Parameters: 7165bb7acecfSBarry Smith + dm - The `DM` object 7166bb7acecfSBarry Smith . label - The `DMLabel` to be removed from the `DM` 7167306894acSVaclav Hapla - failNotFound - Should it fail if the label is not found in the DM? 7168306894acSVaclav Hapla 7169306894acSVaclav Hapla Level: developer 7170306894acSVaclav Hapla 7171bb7acecfSBarry Smith Note: 7172306894acSVaclav Hapla Only exactly the same instance is removed if found, name match is ignored. 7173bb7acecfSBarry Smith If the `DM` has an exclusive reference to the label, the label gets destroyed and 7174306894acSVaclav Hapla *label nullified. 7175306894acSVaclav Hapla 7176bb7acecfSBarry Smith .seealso: `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()` `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabel()` 7177306894acSVaclav Hapla @*/ 7178d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabelBySelf(DM dm, DMLabel *label, PetscBool failNotFound) 7179d71ae5a4SJacob Faibussowitsch { 718043e45a93SVaclav Hapla DMLabelLink link, *pnext; 7181306894acSVaclav Hapla PetscBool hasLabel = PETSC_FALSE; 7182306894acSVaclav Hapla 7183306894acSVaclav Hapla PetscFunctionBegin; 7184306894acSVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7185306894acSVaclav Hapla PetscValidPointer(label, 2); 7186f39a9ae0SVaclav Hapla if (!*label && !failNotFound) PetscFunctionReturn(0); 7187306894acSVaclav Hapla PetscValidHeaderSpecific(*label, DMLABEL_CLASSID, 2); 7188306894acSVaclav Hapla PetscValidLogicalCollectiveBool(dm, failNotFound, 3); 71895d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 719043e45a93SVaclav Hapla if (*label == link->label) { 7191306894acSVaclav Hapla hasLabel = PETSC_TRUE; 719243e45a93SVaclav Hapla *pnext = link->next; /* Remove from list */ 7193306894acSVaclav Hapla if (*label == dm->depthLabel) dm->depthLabel = NULL; 7194ba2698f1SMatthew G. Knepley if (*label == dm->celltypeLabel) dm->celltypeLabel = NULL; 719543e45a93SVaclav Hapla if (((PetscObject)link->label)->refct < 2) *label = NULL; /* nullify if exclusive reference */ 71969566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&link->label)); 71979566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7198306894acSVaclav Hapla break; 7199306894acSVaclav Hapla } 7200306894acSVaclav Hapla } 72017a8be351SBarry Smith PetscCheck(hasLabel || !failNotFound, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Given label not found in DM"); 7202306894acSVaclav Hapla PetscFunctionReturn(0); 7203306894acSVaclav Hapla } 7204306894acSVaclav Hapla 7205c58f1c22SToby Isaac /*@C 7206c58f1c22SToby Isaac DMGetLabelOutput - Get the output flag for a given label 7207c58f1c22SToby Isaac 7208c58f1c22SToby Isaac Not Collective 7209c58f1c22SToby Isaac 7210c58f1c22SToby Isaac Input Parameters: 7211bb7acecfSBarry Smith + dm - The `DM` object 7212c58f1c22SToby Isaac - name - The label name 7213c58f1c22SToby Isaac 7214c58f1c22SToby Isaac Output Parameter: 7215c58f1c22SToby Isaac . output - The flag for output 7216c58f1c22SToby Isaac 7217c58f1c22SToby Isaac Level: developer 7218c58f1c22SToby Isaac 7219bb7acecfSBarry Smith .seealso: `DMLabel`, `DMSetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7220c58f1c22SToby Isaac @*/ 7221d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelOutput(DM dm, const char name[], PetscBool *output) 7222d71ae5a4SJacob Faibussowitsch { 72235d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7224d67d17b1SMatthew G. Knepley const char *lname; 7225c58f1c22SToby Isaac 7226c58f1c22SToby Isaac PetscFunctionBegin; 7227c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7228dadcf809SJacob Faibussowitsch PetscValidCharPointer(name, 2); 7229dadcf809SJacob Faibussowitsch PetscValidBoolPointer(output, 3); 7230c58f1c22SToby Isaac while (next) { 7231c58f1c22SToby Isaac PetscBool flg; 7232c58f1c22SToby Isaac 72339566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 72349566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 72359371c9d4SSatish Balay if (flg) { 72369371c9d4SSatish Balay *output = next->output; 72379371c9d4SSatish Balay PetscFunctionReturn(0); 72389371c9d4SSatish Balay } 7239c58f1c22SToby Isaac next = next->next; 7240c58f1c22SToby Isaac } 724198921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7242c58f1c22SToby Isaac } 7243c58f1c22SToby Isaac 7244c58f1c22SToby Isaac /*@C 7245bb7acecfSBarry Smith DMSetLabelOutput - Set if a given label should be saved to a `PetscViewer` in calls to `DMView()` 7246c58f1c22SToby Isaac 7247c58f1c22SToby Isaac Not Collective 7248c58f1c22SToby Isaac 7249c58f1c22SToby Isaac Input Parameters: 7250bb7acecfSBarry Smith + dm - The `DM` object 7251c58f1c22SToby Isaac . name - The label name 7252bb7acecfSBarry Smith - output - `PETSC_TRUE` to save the label to the viewer 7253c58f1c22SToby Isaac 7254c58f1c22SToby Isaac Level: developer 7255c58f1c22SToby Isaac 7256bb7acecfSBarry Smith .seealso: `DMLabel`, `DMGetOutputFlag()`, `DMGetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7257c58f1c22SToby Isaac @*/ 7258d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelOutput(DM dm, const char name[], PetscBool output) 7259d71ae5a4SJacob Faibussowitsch { 72605d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7261d67d17b1SMatthew G. Knepley const char *lname; 7262c58f1c22SToby Isaac 7263c58f1c22SToby Isaac PetscFunctionBegin; 7264c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7265534a8f05SLisandro Dalcin PetscValidCharPointer(name, 2); 7266c58f1c22SToby Isaac while (next) { 7267c58f1c22SToby Isaac PetscBool flg; 7268c58f1c22SToby Isaac 72699566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 72709566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 72719371c9d4SSatish Balay if (flg) { 72729371c9d4SSatish Balay next->output = output; 72739371c9d4SSatish Balay PetscFunctionReturn(0); 72749371c9d4SSatish Balay } 7275c58f1c22SToby Isaac next = next->next; 7276c58f1c22SToby Isaac } 727798921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7278c58f1c22SToby Isaac } 7279c58f1c22SToby Isaac 7280c58f1c22SToby Isaac /*@ 7281bb7acecfSBarry Smith DMCopyLabels - Copy labels from one `DM` mesh to another `DM` with a superset of the points 7282c58f1c22SToby Isaac 7283d083f849SBarry Smith Collective on dmA 7284c58f1c22SToby Isaac 7285d8d19677SJose E. Roman Input Parameters: 7286bb7acecfSBarry Smith + dmA - The `DM` object with initial labels 7287bb7acecfSBarry Smith . dmB - The `DM` object to which labels are copied 7288bb7acecfSBarry Smith . mode - Copy labels by pointers (`PETSC_OWN_POINTER`) or duplicate them (`PETSC_COPY_VALUES`) 7289bb7acecfSBarry Smith . all - Copy all labels including "depth", "dim", and "celltype" (`PETSC_TRUE`) which are otherwise ignored (`PETSC_FALSE`) 7290bb7acecfSBarry Smith - emode - How to behave when a `DMLabel` in the source and destination `DM`s with the same name is encountered (see `DMCopyLabelsMode`) 7291c58f1c22SToby Isaac 7292c58f1c22SToby Isaac Level: intermediate 7293c58f1c22SToby Isaac 7294bb7acecfSBarry Smith Note: 72952cbb9b06SVaclav Hapla This is typically used when interpolating or otherwise adding to a mesh, or testing. 7296c58f1c22SToby Isaac 7297bb7acecfSBarry Smith .seealso: `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode` 7298c58f1c22SToby Isaac @*/ 7299d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyLabels(DM dmA, DM dmB, PetscCopyMode mode, PetscBool all, DMCopyLabelsMode emode) 7300d71ae5a4SJacob Faibussowitsch { 73012cbb9b06SVaclav Hapla DMLabel label, labelNew, labelOld; 7302c58f1c22SToby Isaac const char *name; 7303c58f1c22SToby Isaac PetscBool flg; 73045d80c0bfSVaclav Hapla DMLabelLink link; 7305c58f1c22SToby Isaac 73065d80c0bfSVaclav Hapla PetscFunctionBegin; 73075d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 73085d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 73095d80c0bfSVaclav Hapla PetscValidLogicalCollectiveEnum(dmA, mode, 3); 73105d80c0bfSVaclav Hapla PetscValidLogicalCollectiveBool(dmA, all, 4); 73117a8be351SBarry Smith PetscCheck(mode != PETSC_USE_POINTER, PetscObjectComm((PetscObject)dmA), PETSC_ERR_SUP, "PETSC_USE_POINTER not supported for objects"); 73125d80c0bfSVaclav Hapla if (dmA == dmB) PetscFunctionReturn(0); 73135d80c0bfSVaclav Hapla for (link = dmA->labels; link; link = link->next) { 73145d80c0bfSVaclav Hapla label = link->label; 73159566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 73165d80c0bfSVaclav Hapla if (!all) { 73179566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &flg)); 7318c58f1c22SToby Isaac if (flg) continue; 73199566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "dim", &flg)); 73207d5acc75SStefano Zampini if (flg) continue; 73219566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &flg)); 7322ba2698f1SMatthew G. Knepley if (flg) continue; 73235d80c0bfSVaclav Hapla } 73249566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmB, name, &labelOld)); 73252cbb9b06SVaclav Hapla if (labelOld) { 73262cbb9b06SVaclav Hapla switch (emode) { 7327d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_KEEP: 7328d71ae5a4SJacob Faibussowitsch continue; 7329d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_REPLACE: 7330d71ae5a4SJacob Faibussowitsch PetscCall(DMRemoveLabelBySelf(dmB, &labelOld, PETSC_TRUE)); 7331d71ae5a4SJacob Faibussowitsch break; 7332d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_FAIL: 7333d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in destination DM", name); 7334d71ae5a4SJacob Faibussowitsch default: 7335d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Unhandled DMCopyLabelsMode %d", (int)emode); 73362cbb9b06SVaclav Hapla } 73372cbb9b06SVaclav Hapla } 73385d80c0bfSVaclav Hapla if (mode == PETSC_COPY_VALUES) { 73399566063dSJacob Faibussowitsch PetscCall(DMLabelDuplicate(label, &labelNew)); 73405d80c0bfSVaclav Hapla } else { 73415d80c0bfSVaclav Hapla labelNew = label; 73425d80c0bfSVaclav Hapla } 73439566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dmB, labelNew)); 73449566063dSJacob Faibussowitsch if (mode == PETSC_COPY_VALUES) PetscCall(DMLabelDestroy(&labelNew)); 7345c58f1c22SToby Isaac } 7346c58f1c22SToby Isaac PetscFunctionReturn(0); 7347c58f1c22SToby Isaac } 7348461a15a0SLisandro Dalcin 7349609dae6eSVaclav Hapla /*@C 7350bb7acecfSBarry Smith DMCompareLabels - Compare labels of two `DMPLEX` meshes 7351609dae6eSVaclav Hapla 73525efe38ccSVaclav Hapla Collective 7353609dae6eSVaclav Hapla 7354609dae6eSVaclav Hapla Input Parameters: 7355bb7acecfSBarry Smith + dm0 - First `DM` object 7356bb7acecfSBarry Smith - dm1 - Second `DM` object 7357609dae6eSVaclav Hapla 7358609dae6eSVaclav Hapla Output Parameters 73595efe38ccSVaclav Hapla + equal - (Optional) Flag whether labels of dm0 and dm1 are the same 7360609dae6eSVaclav Hapla - message - (Optional) Message describing the difference, or NULL if there is no difference 7361609dae6eSVaclav Hapla 7362609dae6eSVaclav Hapla Level: intermediate 7363609dae6eSVaclav Hapla 7364609dae6eSVaclav Hapla Notes: 7365bb7acecfSBarry Smith The output flag equal will be the same on all processes. 7366bb7acecfSBarry Smith 7367bb7acecfSBarry Smith If equal is passed as NULL and difference is found, an error is thrown on all processes. 7368bb7acecfSBarry Smith 7369bb7acecfSBarry Smith Make sure to pass equal is NULL on all processes or none of them. 7370609dae6eSVaclav Hapla 73715efe38ccSVaclav Hapla The output message is set independently on each rank. 7372bb7acecfSBarry Smith 7373bb7acecfSBarry Smith message must be freed with `PetscFree()` 7374bb7acecfSBarry Smith 7375bb7acecfSBarry Smith If message is passed as NULL and a difference is found, the difference description is printed to stderr in synchronized manner. 7376bb7acecfSBarry Smith 7377bb7acecfSBarry Smith Make sure to pass message as NULL on all processes or no processes. 7378609dae6eSVaclav Hapla 7379609dae6eSVaclav Hapla Labels are matched by name. If the number of labels and their names are equal, 7380bb7acecfSBarry Smith `DMLabelCompare()` is used to compare each pair of labels with the same name. 7381609dae6eSVaclav Hapla 7382bb7acecfSBarry Smith Fortran Note: 7383bb7acecfSBarry Smith This function is not available from Fortran. 7384609dae6eSVaclav Hapla 7385bb7acecfSBarry Smith .seealso: `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`, `DMLabelCompare()` 7386609dae6eSVaclav Hapla @*/ 7387d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompareLabels(DM dm0, DM dm1, PetscBool *equal, char **message) 7388d71ae5a4SJacob Faibussowitsch { 73895efe38ccSVaclav Hapla PetscInt n, i; 7390609dae6eSVaclav Hapla char msg[PETSC_MAX_PATH_LEN] = ""; 73915efe38ccSVaclav Hapla PetscBool eq; 7392609dae6eSVaclav Hapla MPI_Comm comm; 73935efe38ccSVaclav Hapla PetscMPIInt rank; 7394609dae6eSVaclav Hapla 7395609dae6eSVaclav Hapla PetscFunctionBegin; 7396609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm0, DM_CLASSID, 1); 7397609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm1, DM_CLASSID, 2); 7398609dae6eSVaclav Hapla PetscCheckSameComm(dm0, 1, dm1, 2); 73995efe38ccSVaclav Hapla if (equal) PetscValidBoolPointer(equal, 3); 7400609dae6eSVaclav Hapla if (message) PetscValidPointer(message, 4); 74019566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm0, &comm)); 74029566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 74035efe38ccSVaclav Hapla { 74045efe38ccSVaclav Hapla PetscInt n1; 74055efe38ccSVaclav Hapla 74069566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm0, &n)); 74079566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm1, &n1)); 74085efe38ccSVaclav Hapla eq = (PetscBool)(n == n1); 740948a46eb9SPierre Jolivet if (!eq) PetscCall(PetscSNPrintf(msg, sizeof(msg), "Number of labels in dm0 = %" PetscInt_FMT " != %" PetscInt_FMT " = Number of labels in dm1", n, n1)); 74109566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 74115efe38ccSVaclav Hapla if (!eq) goto finish; 74125efe38ccSVaclav Hapla } 74135efe38ccSVaclav Hapla for (i = 0; i < n; i++) { 7414609dae6eSVaclav Hapla DMLabel l0, l1; 7415609dae6eSVaclav Hapla const char *name; 7416609dae6eSVaclav Hapla char *msgInner; 7417609dae6eSVaclav Hapla 7418609dae6eSVaclav Hapla /* Ignore label order */ 74199566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm0, i, &l0)); 74209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)l0, &name)); 74219566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm1, name, &l1)); 7422609dae6eSVaclav Hapla if (!l1) { 742363a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(msg, sizeof(msg), "Label \"%s\" (#%" PetscInt_FMT " in dm0) not found in dm1", name, i)); 74245efe38ccSVaclav Hapla eq = PETSC_FALSE; 74255efe38ccSVaclav Hapla break; 7426609dae6eSVaclav Hapla } 74279566063dSJacob Faibussowitsch PetscCall(DMLabelCompare(comm, l0, l1, &eq, &msgInner)); 74289566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(msg, msgInner, sizeof(msg))); 74299566063dSJacob Faibussowitsch PetscCall(PetscFree(msgInner)); 74305efe38ccSVaclav Hapla if (!eq) break; 7431609dae6eSVaclav Hapla } 74329566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 7433609dae6eSVaclav Hapla finish: 74345efe38ccSVaclav Hapla /* If message output arg not set, print to stderr */ 7435609dae6eSVaclav Hapla if (message) { 7436609dae6eSVaclav Hapla *message = NULL; 743748a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscStrallocpy(msg, message)); 74385efe38ccSVaclav Hapla } else { 743948a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscSynchronizedFPrintf(comm, PETSC_STDERR, "[%d] %s\n", rank, msg)); 74409566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, PETSC_STDERR)); 74415efe38ccSVaclav Hapla } 74425efe38ccSVaclav Hapla /* If same output arg not ser and labels are not equal, throw error */ 74435efe38ccSVaclav Hapla if (equal) *equal = eq; 74447a8be351SBarry Smith else PetscCheck(eq, comm, PETSC_ERR_ARG_INCOMP, "DMLabels are not the same in dm0 and dm1"); 7445609dae6eSVaclav Hapla PetscFunctionReturn(0); 7446609dae6eSVaclav Hapla } 7447609dae6eSVaclav Hapla 7448d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue_Fast(DM dm, DMLabel *label, const char name[], PetscInt point, PetscInt value) 7449d71ae5a4SJacob Faibussowitsch { 7450461a15a0SLisandro Dalcin PetscFunctionBegin; 7451461a15a0SLisandro Dalcin PetscValidPointer(label, 2); 7452461a15a0SLisandro Dalcin if (!*label) { 74539566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 74549566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, label)); 7455461a15a0SLisandro Dalcin } 74569566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(*label, point, value)); 7457461a15a0SLisandro Dalcin PetscFunctionReturn(0); 7458461a15a0SLisandro Dalcin } 7459461a15a0SLisandro Dalcin 74600fdc7489SMatthew Knepley /* 74610fdc7489SMatthew Knepley Many mesh programs, such as Triangle and TetGen, allow only a single label for each mesh point. Therefore, we would 74620fdc7489SMatthew Knepley like to encode all label IDs using a single, universal label. We can do this by assigning an integer to every 74630fdc7489SMatthew Knepley (label, id) pair in the DM. 74640fdc7489SMatthew Knepley 74650fdc7489SMatthew Knepley However, a mesh point can have multiple labels, so we must separate all these values. We will assign a bit range to 74660fdc7489SMatthew Knepley each label. 74670fdc7489SMatthew Knepley */ 7468d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreate(DM dm, DMUniversalLabel *universal) 7469d71ae5a4SJacob Faibussowitsch { 74700fdc7489SMatthew Knepley DMUniversalLabel ul; 74710fdc7489SMatthew Knepley PetscBool *active; 74720fdc7489SMatthew Knepley PetscInt pStart, pEnd, p, Nl, l, m; 74730fdc7489SMatthew Knepley 74740fdc7489SMatthew Knepley PetscFunctionBegin; 74759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &ul)); 74769566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "universal", &ul->label)); 74779566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 74789566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Nl, &active)); 74790fdc7489SMatthew Knepley ul->Nl = 0; 74800fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 74810fdc7489SMatthew Knepley PetscBool isdepth, iscelltype; 74820fdc7489SMatthew Knepley const char *name; 74830fdc7489SMatthew Knepley 74849566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 74859566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "depth", 6, &isdepth)); 74869566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "celltype", 9, &iscelltype)); 74870fdc7489SMatthew Knepley active[l] = !(isdepth || iscelltype) ? PETSC_TRUE : PETSC_FALSE; 74880fdc7489SMatthew Knepley if (active[l]) ++ul->Nl; 74890fdc7489SMatthew Knepley } 74909566063dSJacob Faibussowitsch PetscCall(PetscCalloc5(ul->Nl, &ul->names, ul->Nl, &ul->indices, ul->Nl + 1, &ul->offsets, ul->Nl + 1, &ul->bits, ul->Nl, &ul->masks)); 74910fdc7489SMatthew Knepley ul->Nv = 0; 74920fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 74930fdc7489SMatthew Knepley DMLabel label; 74940fdc7489SMatthew Knepley PetscInt nv; 74950fdc7489SMatthew Knepley const char *name; 74960fdc7489SMatthew Knepley 74970fdc7489SMatthew Knepley if (!active[l]) continue; 74989566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 74999566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 75009566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 75019566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(name, &ul->names[m])); 75020fdc7489SMatthew Knepley ul->indices[m] = l; 75030fdc7489SMatthew Knepley ul->Nv += nv; 75040fdc7489SMatthew Knepley ul->offsets[m + 1] = nv; 75050fdc7489SMatthew Knepley ul->bits[m + 1] = PetscCeilReal(PetscLog2Real(nv + 1)); 75060fdc7489SMatthew Knepley ++m; 75070fdc7489SMatthew Knepley } 75080fdc7489SMatthew Knepley for (l = 1; l <= ul->Nl; ++l) { 75090fdc7489SMatthew Knepley ul->offsets[l] = ul->offsets[l - 1] + ul->offsets[l]; 75100fdc7489SMatthew Knepley ul->bits[l] = ul->bits[l - 1] + ul->bits[l]; 75110fdc7489SMatthew Knepley } 75120fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 75130fdc7489SMatthew Knepley PetscInt b; 75140fdc7489SMatthew Knepley 75150fdc7489SMatthew Knepley ul->masks[l] = 0; 75160fdc7489SMatthew Knepley for (b = ul->bits[l]; b < ul->bits[l + 1]; ++b) ul->masks[l] |= 1 << b; 75170fdc7489SMatthew Knepley } 75189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ul->Nv, &ul->values)); 75190fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 75200fdc7489SMatthew Knepley DMLabel label; 75210fdc7489SMatthew Knepley IS valueIS; 75220fdc7489SMatthew Knepley const PetscInt *varr; 75230fdc7489SMatthew Knepley PetscInt nv, v; 75240fdc7489SMatthew Knepley 75250fdc7489SMatthew Knepley if (!active[l]) continue; 75269566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 75279566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 75289566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 75299566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &varr)); 7530ad540459SPierre Jolivet for (v = 0; v < nv; ++v) ul->values[ul->offsets[m] + v] = varr[v]; 75319566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &varr)); 75329566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 75339566063dSJacob Faibussowitsch PetscCall(PetscSortInt(nv, &ul->values[ul->offsets[m]])); 75340fdc7489SMatthew Knepley ++m; 75350fdc7489SMatthew Knepley } 75369566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 75370fdc7489SMatthew Knepley for (p = pStart; p < pEnd; ++p) { 75380fdc7489SMatthew Knepley PetscInt uval = 0; 75390fdc7489SMatthew Knepley PetscBool marked = PETSC_FALSE; 75400fdc7489SMatthew Knepley 75410fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 75420fdc7489SMatthew Knepley DMLabel label; 75430649b39aSStefano Zampini PetscInt val, defval, loc, nv; 75440fdc7489SMatthew Knepley 75450fdc7489SMatthew Knepley if (!active[l]) continue; 75469566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 75479566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, p, &val)); 75489566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defval)); 75499371c9d4SSatish Balay if (val == defval) { 75509371c9d4SSatish Balay ++m; 75519371c9d4SSatish Balay continue; 75529371c9d4SSatish Balay } 75530649b39aSStefano Zampini nv = ul->offsets[m + 1] - ul->offsets[m]; 75540fdc7489SMatthew Knepley marked = PETSC_TRUE; 75559566063dSJacob Faibussowitsch PetscCall(PetscFindInt(val, nv, &ul->values[ul->offsets[m]], &loc)); 755663a3b9bcSJacob Faibussowitsch PetscCheck(loc >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Label value %" PetscInt_FMT " not found in compression array", val); 75570fdc7489SMatthew Knepley uval += (loc + 1) << ul->bits[m]; 75580fdc7489SMatthew Knepley ++m; 75590fdc7489SMatthew Knepley } 75609566063dSJacob Faibussowitsch if (marked) PetscCall(DMLabelSetValue(ul->label, p, uval)); 75610fdc7489SMatthew Knepley } 75629566063dSJacob Faibussowitsch PetscCall(PetscFree(active)); 75630fdc7489SMatthew Knepley *universal = ul; 75640fdc7489SMatthew Knepley PetscFunctionReturn(0); 75650fdc7489SMatthew Knepley } 75660fdc7489SMatthew Knepley 7567d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelDestroy(DMUniversalLabel *universal) 7568d71ae5a4SJacob Faibussowitsch { 75690fdc7489SMatthew Knepley PetscInt l; 75700fdc7489SMatthew Knepley 75710fdc7489SMatthew Knepley PetscFunctionBegin; 75729566063dSJacob Faibussowitsch for (l = 0; l < (*universal)->Nl; ++l) PetscCall(PetscFree((*universal)->names[l])); 75739566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&(*universal)->label)); 75749566063dSJacob Faibussowitsch PetscCall(PetscFree5((*universal)->names, (*universal)->indices, (*universal)->offsets, (*universal)->bits, (*universal)->masks)); 75759566063dSJacob Faibussowitsch PetscCall(PetscFree((*universal)->values)); 75769566063dSJacob Faibussowitsch PetscCall(PetscFree(*universal)); 75770fdc7489SMatthew Knepley *universal = NULL; 75780fdc7489SMatthew Knepley PetscFunctionReturn(0); 75790fdc7489SMatthew Knepley } 75800fdc7489SMatthew Knepley 7581d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelGetLabel(DMUniversalLabel ul, DMLabel *ulabel) 7582d71ae5a4SJacob Faibussowitsch { 75830fdc7489SMatthew Knepley PetscFunctionBegin; 75840fdc7489SMatthew Knepley PetscValidPointer(ulabel, 2); 75850fdc7489SMatthew Knepley *ulabel = ul->label; 75860fdc7489SMatthew Knepley PetscFunctionReturn(0); 75870fdc7489SMatthew Knepley } 75880fdc7489SMatthew Knepley 7589d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreateLabels(DMUniversalLabel ul, PetscBool preserveOrder, DM dm) 7590d71ae5a4SJacob Faibussowitsch { 75910fdc7489SMatthew Knepley PetscInt Nl = ul->Nl, l; 75920fdc7489SMatthew Knepley 75930fdc7489SMatthew Knepley PetscFunctionBegin; 7594064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dm, DM_CLASSID, 3); 75950fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 75969566063dSJacob Faibussowitsch if (preserveOrder) PetscCall(DMCreateLabelAtIndex(dm, ul->indices[l], ul->names[l])); 75979566063dSJacob Faibussowitsch else PetscCall(DMCreateLabel(dm, ul->names[l])); 75980fdc7489SMatthew Knepley } 75990fdc7489SMatthew Knepley if (preserveOrder) { 76000fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 76010fdc7489SMatthew Knepley const char *name; 76020fdc7489SMatthew Knepley PetscBool match; 76030fdc7489SMatthew Knepley 76049566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, ul->indices[l], &name)); 76059566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, ul->names[l], &match)); 760663a3b9bcSJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Label %" PetscInt_FMT " name %s does not match new name %s", l, name, ul->names[l]); 76070fdc7489SMatthew Knepley } 76080fdc7489SMatthew Knepley } 76090fdc7489SMatthew Knepley PetscFunctionReturn(0); 76100fdc7489SMatthew Knepley } 76110fdc7489SMatthew Knepley 7612d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelSetLabelValue(DMUniversalLabel ul, DM dm, PetscBool useIndex, PetscInt p, PetscInt value) 7613d71ae5a4SJacob Faibussowitsch { 76140fdc7489SMatthew Knepley PetscInt l; 76150fdc7489SMatthew Knepley 76160fdc7489SMatthew Knepley PetscFunctionBegin; 76170fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 76180fdc7489SMatthew Knepley DMLabel label; 76190fdc7489SMatthew Knepley PetscInt lval = (value & ul->masks[l]) >> ul->bits[l]; 76200fdc7489SMatthew Knepley 76210fdc7489SMatthew Knepley if (lval) { 76229566063dSJacob Faibussowitsch if (useIndex) PetscCall(DMGetLabelByNum(dm, ul->indices[l], &label)); 76239566063dSJacob Faibussowitsch else PetscCall(DMGetLabel(dm, ul->names[l], &label)); 76249566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, ul->values[ul->offsets[l] + lval - 1])); 76250fdc7489SMatthew Knepley } 76260fdc7489SMatthew Knepley } 76270fdc7489SMatthew Knepley PetscFunctionReturn(0); 76280fdc7489SMatthew Knepley } 7629a8fb8f29SToby Isaac 7630a8fb8f29SToby Isaac /*@ 7631bb7acecfSBarry Smith DMGetCoarseDM - Get the coarse `DM`from which this `DM` was obtained by refinement 7632bb7acecfSBarry Smith 7633bb7acecfSBarry Smith Not collective 7634a8fb8f29SToby Isaac 7635a8fb8f29SToby Isaac Input Parameter: 7636bb7acecfSBarry Smith . dm - The `DM` object 7637a8fb8f29SToby Isaac 7638a8fb8f29SToby Isaac Output Parameter: 7639bb7acecfSBarry Smith . cdm - The coarse `DM` 7640a8fb8f29SToby Isaac 7641a8fb8f29SToby Isaac Level: intermediate 7642a8fb8f29SToby Isaac 7643bb7acecfSBarry Smith .seealso: `DMSetCoarseDM()`, `DMCoarsen()` 7644a8fb8f29SToby Isaac @*/ 7645d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarseDM(DM dm, DM *cdm) 7646d71ae5a4SJacob Faibussowitsch { 7647a8fb8f29SToby Isaac PetscFunctionBegin; 7648a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7649a8fb8f29SToby Isaac PetscValidPointer(cdm, 2); 7650a8fb8f29SToby Isaac *cdm = dm->coarseMesh; 7651a8fb8f29SToby Isaac PetscFunctionReturn(0); 7652a8fb8f29SToby Isaac } 7653a8fb8f29SToby Isaac 7654a8fb8f29SToby Isaac /*@ 7655bb7acecfSBarry Smith DMSetCoarseDM - Set the coarse `DM` from which this `DM` was obtained by refinement 7656a8fb8f29SToby Isaac 7657a8fb8f29SToby Isaac Input Parameters: 7658bb7acecfSBarry Smith + dm - The `DM` object 7659bb7acecfSBarry Smith - cdm - The coarse `DM` 7660a8fb8f29SToby Isaac 7661a8fb8f29SToby Isaac Level: intermediate 7662a8fb8f29SToby Isaac 7663bb7acecfSBarry Smith Note: 7664bb7acecfSBarry Smith Normally this is set automatically by `DMRefine()` 7665bb7acecfSBarry Smith 7666bb7acecfSBarry Smith .seealso: `DMGetCoarseDM()`, `DMCoarsen()`, `DMSetRefine()`, `DMSetFineDM()` 7667a8fb8f29SToby Isaac @*/ 7668d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarseDM(DM dm, DM cdm) 7669d71ae5a4SJacob Faibussowitsch { 7670a8fb8f29SToby Isaac PetscFunctionBegin; 7671a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7672a8fb8f29SToby Isaac if (cdm) PetscValidHeaderSpecific(cdm, DM_CLASSID, 2); 767389d734beSBarry Smith if (dm == cdm) cdm = NULL; 76749566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)cdm)); 76759566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->coarseMesh)); 7676a8fb8f29SToby Isaac dm->coarseMesh = cdm; 7677a8fb8f29SToby Isaac PetscFunctionReturn(0); 7678a8fb8f29SToby Isaac } 7679a8fb8f29SToby Isaac 768088bdff64SToby Isaac /*@ 7681bb7acecfSBarry Smith DMGetFineDM - Get the fine mesh from which this `DM` was obtained by coarsening 768288bdff64SToby Isaac 768388bdff64SToby Isaac Input Parameter: 7684bb7acecfSBarry Smith . dm - The `DM` object 768588bdff64SToby Isaac 768688bdff64SToby Isaac Output Parameter: 7687bb7acecfSBarry Smith . fdm - The fine `DM` 768888bdff64SToby Isaac 768988bdff64SToby Isaac Level: intermediate 769088bdff64SToby Isaac 7691bb7acecfSBarry Smith .seealso: `DMSetFineDM()`, `DMCoarsen()`, `DMRefine()` 769288bdff64SToby Isaac @*/ 7693d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFineDM(DM dm, DM *fdm) 7694d71ae5a4SJacob Faibussowitsch { 769588bdff64SToby Isaac PetscFunctionBegin; 769688bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 769788bdff64SToby Isaac PetscValidPointer(fdm, 2); 769888bdff64SToby Isaac *fdm = dm->fineMesh; 769988bdff64SToby Isaac PetscFunctionReturn(0); 770088bdff64SToby Isaac } 770188bdff64SToby Isaac 770288bdff64SToby Isaac /*@ 7703bb7acecfSBarry Smith DMSetFineDM - Set the fine mesh from which this was obtained by coarsening 770488bdff64SToby Isaac 770588bdff64SToby Isaac Input Parameters: 7706bb7acecfSBarry Smith + dm - The `DM` object 7707bb7acecfSBarry Smith - fdm - The fine `DM` 770888bdff64SToby Isaac 7709bb7acecfSBarry Smith Level: developer 771088bdff64SToby Isaac 7711bb7acecfSBarry Smith Note: 7712bb7acecfSBarry Smith Normally this is set automatically by `DMCoarsen()` 7713bb7acecfSBarry Smith 7714bb7acecfSBarry Smith .seealso: `DMGetFineDM()`, `DMCoarsen()`, `DMRefine()` 771588bdff64SToby Isaac @*/ 7716d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFineDM(DM dm, DM fdm) 7717d71ae5a4SJacob Faibussowitsch { 771888bdff64SToby Isaac PetscFunctionBegin; 771988bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 772088bdff64SToby Isaac if (fdm) PetscValidHeaderSpecific(fdm, DM_CLASSID, 2); 772189d734beSBarry Smith if (dm == fdm) fdm = NULL; 77229566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fdm)); 77239566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->fineMesh)); 772488bdff64SToby Isaac dm->fineMesh = fdm; 772588bdff64SToby Isaac PetscFunctionReturn(0); 772688bdff64SToby Isaac } 772788bdff64SToby Isaac 7728a6ba4734SToby Isaac /*@C 7729bb7acecfSBarry Smith DMAddBoundary - Add a boundary condition to a model represented by a `DM` 7730a6ba4734SToby Isaac 7731783e2ec8SMatthew G. Knepley Collective on dm 7732783e2ec8SMatthew G. Knepley 7733a6ba4734SToby Isaac Input Parameters: 7734bb7acecfSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 7735bb7acecfSBarry Smith . type - The type of condition, e.g. `DM_BC_ESSENTIAL_ANALYTIC`, `DM_BC_ESSENTIAL_FIELD` (Dirichlet), or `DM_BC_NATURAL` (Neumann) 7736a6ba4734SToby Isaac . name - The BC name 773745480ffeSMatthew G. Knepley . label - The label defining constrained points 7738bb7acecfSBarry Smith . Nv - The number of `DMLabel` values for constrained points 773945480ffeSMatthew G. Knepley . values - An array of values for constrained points 7740a6ba4734SToby Isaac . field - The field to constrain 774145480ffeSMatthew G. Knepley . Nc - The number of constrained field components (0 will constrain all fields) 7742a6ba4734SToby Isaac . comps - An array of constrained component numbers 7743a6ba4734SToby Isaac . bcFunc - A pointwise function giving boundary values 774456cf3b9cSMatthew G. Knepley . bcFunc_t - A pointwise function giving the time deriative of the boundary values, or NULL 7745a6ba4734SToby Isaac - ctx - An optional user context for bcFunc 7746a6ba4734SToby Isaac 774745480ffeSMatthew G. Knepley Output Parameter: 774845480ffeSMatthew G. Knepley . bd - (Optional) Boundary number 774945480ffeSMatthew G. Knepley 7750a6ba4734SToby Isaac Options Database Keys: 7751a6ba4734SToby Isaac + -bc_<boundary name> <num> - Overrides the boundary ids 7752a6ba4734SToby Isaac - -bc_<boundary name>_comp <num> - Overrides the boundary components 7753a6ba4734SToby Isaac 7754bb7acecfSBarry Smith Notes: 7755bb7acecfSBarry Smith Both bcFunc abd bcFunc_t will depend on the boundary condition type. If the type if `DM_BC_ESSENTIAL`, then the calling sequence is: 775656cf3b9cSMatthew G. Knepley 775756cf3b9cSMatthew G. Knepley $ bcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[]) 775856cf3b9cSMatthew G. Knepley 7759bb7acecfSBarry Smith If the type is `DM_BC_ESSENTIAL_FIELD` or other _FIELD value, then the calling sequence is: 776056cf3b9cSMatthew G. Knepley 776156cf3b9cSMatthew G. Knepley $ bcFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux, 776256cf3b9cSMatthew G. Knepley $ const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 776356cf3b9cSMatthew G. Knepley $ const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 776456cf3b9cSMatthew G. Knepley $ PetscReal time, const PetscReal x[], PetscScalar bcval[]) 776556cf3b9cSMatthew G. Knepley 776656cf3b9cSMatthew G. Knepley + dim - the spatial dimension 776756cf3b9cSMatthew G. Knepley . Nf - the number of fields 776856cf3b9cSMatthew G. Knepley . uOff - the offset into u[] and u_t[] for each field 776956cf3b9cSMatthew G. Knepley . uOff_x - the offset into u_x[] for each field 777056cf3b9cSMatthew G. Knepley . u - each field evaluated at the current point 777156cf3b9cSMatthew G. Knepley . u_t - the time derivative of each field evaluated at the current point 777256cf3b9cSMatthew G. Knepley . u_x - the gradient of each field evaluated at the current point 777356cf3b9cSMatthew G. Knepley . aOff - the offset into a[] and a_t[] for each auxiliary field 777456cf3b9cSMatthew G. Knepley . aOff_x - the offset into a_x[] for each auxiliary field 777556cf3b9cSMatthew G. Knepley . a - each auxiliary field evaluated at the current point 777656cf3b9cSMatthew G. Knepley . a_t - the time derivative of each auxiliary field evaluated at the current point 777756cf3b9cSMatthew G. Knepley . a_x - the gradient of auxiliary each field evaluated at the current point 777856cf3b9cSMatthew G. Knepley . t - current time 777956cf3b9cSMatthew G. Knepley . x - coordinates of the current point 778056cf3b9cSMatthew G. Knepley . numConstants - number of constant parameters 778156cf3b9cSMatthew G. Knepley . constants - constant parameters 778256cf3b9cSMatthew G. Knepley - bcval - output values at the current point 778356cf3b9cSMatthew G. Knepley 7784ed808b8fSJed Brown Level: intermediate 7785a6ba4734SToby Isaac 7786db781477SPatrick Sanan .seealso: `DSGetBoundary()`, `PetscDSAddBoundary()` 7787a6ba4734SToby Isaac @*/ 7788d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddBoundary(DM dm, DMBoundaryConditionType type, const char name[], DMLabel label, PetscInt Nv, const PetscInt values[], PetscInt field, PetscInt Nc, const PetscInt comps[], void (*bcFunc)(void), void (*bcFunc_t)(void), void *ctx, PetscInt *bd) 7789d71ae5a4SJacob Faibussowitsch { 7790e5e52638SMatthew G. Knepley PetscDS ds; 7791a6ba4734SToby Isaac 7792a6ba4734SToby Isaac PetscFunctionBegin; 7793a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7794783e2ec8SMatthew G. Knepley PetscValidLogicalCollectiveEnum(dm, type, 2); 779545480ffeSMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 4); 779645480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nv, 5); 779745480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, field, 7); 779845480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 8); 779901a5d20dSJed Brown PetscCheck(!dm->localSection, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot add boundary to DM after creating local section"); 78009566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 7801799db056SMatthew G. Knepley /* Complete label */ 7802799db056SMatthew G. Knepley if (label) { 7803799db056SMatthew G. Knepley PetscObject obj; 7804799db056SMatthew G. Knepley PetscClassId id; 7805799db056SMatthew G. Knepley 7806799db056SMatthew G. Knepley PetscCall(DMGetField(dm, field, NULL, &obj)); 7807799db056SMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 7808799db056SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 7809799db056SMatthew G. Knepley DM plex; 7810799db056SMatthew G. Knepley 7811799db056SMatthew G. Knepley PetscCall(DMConvert(dm, DMPLEX, &plex)); 7812799db056SMatthew G. Knepley if (plex) PetscCall(DMPlexLabelComplete(plex, label)); 7813799db056SMatthew G. Knepley PetscCall(DMDestroy(&plex)); 7814799db056SMatthew G. Knepley } 7815799db056SMatthew G. Knepley } 78169566063dSJacob Faibussowitsch PetscCall(PetscDSAddBoundary(ds, type, name, label, Nv, values, field, Nc, comps, bcFunc, bcFunc_t, ctx, bd)); 7817a6ba4734SToby Isaac PetscFunctionReturn(0); 7818a6ba4734SToby Isaac } 7819a6ba4734SToby Isaac 782045480ffeSMatthew G. Knepley /* TODO Remove this since now the structures are the same */ 7821d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPopulateBoundary(DM dm) 7822d71ae5a4SJacob Faibussowitsch { 7823e5e52638SMatthew G. Knepley PetscDS ds; 7824dff059c6SToby Isaac DMBoundary *lastnext; 7825e6f8dbb6SToby Isaac DSBoundary dsbound; 7826e6f8dbb6SToby Isaac 7827e6f8dbb6SToby Isaac PetscFunctionBegin; 78289566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 7829e5e52638SMatthew G. Knepley dsbound = ds->boundary; 783047a1f5adSToby Isaac if (dm->boundary) { 783147a1f5adSToby Isaac DMBoundary next = dm->boundary; 783247a1f5adSToby Isaac 783347a1f5adSToby Isaac /* quick check to see if the PetscDS has changed */ 783447a1f5adSToby Isaac if (next->dsboundary == dsbound) PetscFunctionReturn(0); 783547a1f5adSToby Isaac /* the PetscDS has changed: tear down and rebuild */ 783647a1f5adSToby Isaac while (next) { 783747a1f5adSToby Isaac DMBoundary b = next; 783847a1f5adSToby Isaac 783947a1f5adSToby Isaac next = b->next; 78409566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 7841a6ba4734SToby Isaac } 784247a1f5adSToby Isaac dm->boundary = NULL; 7843a6ba4734SToby Isaac } 784447a1f5adSToby Isaac 7845dff059c6SToby Isaac lastnext = &(dm->boundary); 7846e6f8dbb6SToby Isaac while (dsbound) { 7847e6f8dbb6SToby Isaac DMBoundary dmbound; 7848e6f8dbb6SToby Isaac 78499566063dSJacob Faibussowitsch PetscCall(PetscNew(&dmbound)); 7850e6f8dbb6SToby Isaac dmbound->dsboundary = dsbound; 785145480ffeSMatthew G. Knepley dmbound->label = dsbound->label; 785247a1f5adSToby Isaac /* push on the back instead of the front so that it is in the same order as in the PetscDS */ 7853dff059c6SToby Isaac *lastnext = dmbound; 7854dff059c6SToby Isaac lastnext = &(dmbound->next); 7855dff059c6SToby Isaac dsbound = dsbound->next; 7856a6ba4734SToby Isaac } 7857a6ba4734SToby Isaac PetscFunctionReturn(0); 7858a6ba4734SToby Isaac } 7859a6ba4734SToby Isaac 7860bb7acecfSBarry Smith /* TODO: missing manual page */ 7861d71ae5a4SJacob Faibussowitsch PetscErrorCode DMIsBoundaryPoint(DM dm, PetscInt point, PetscBool *isBd) 7862d71ae5a4SJacob Faibussowitsch { 7863b95f2879SToby Isaac DMBoundary b; 7864a6ba4734SToby Isaac 7865a6ba4734SToby Isaac PetscFunctionBegin; 7866a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7867534a8f05SLisandro Dalcin PetscValidBoolPointer(isBd, 3); 7868a6ba4734SToby Isaac *isBd = PETSC_FALSE; 78699566063dSJacob Faibussowitsch PetscCall(DMPopulateBoundary(dm)); 7870b95f2879SToby Isaac b = dm->boundary; 7871a6ba4734SToby Isaac while (b && !(*isBd)) { 7872e6f8dbb6SToby Isaac DMLabel label = b->label; 7873e6f8dbb6SToby Isaac DSBoundary dsb = b->dsboundary; 7874a6ba4734SToby Isaac PetscInt i; 7875a6ba4734SToby Isaac 787645480ffeSMatthew G. Knepley if (label) { 78779566063dSJacob Faibussowitsch for (i = 0; i < dsb->Nv && !(*isBd); ++i) PetscCall(DMLabelStratumHasPoint(label, dsb->values[i], point, isBd)); 7878a6ba4734SToby Isaac } 7879a6ba4734SToby Isaac b = b->next; 7880a6ba4734SToby Isaac } 7881a6ba4734SToby Isaac PetscFunctionReturn(0); 7882a6ba4734SToby Isaac } 78834d6f44ffSToby Isaac 78844d6f44ffSToby Isaac /*@C 7885bb7acecfSBarry Smith DMProjectFunction - This projects the given function into the function space provided by a `DM`, putting the coefficients in a global vector. 7886a6e0b375SMatthew G. Knepley 7887bb7acecfSBarry Smith Collective on dm 78884d6f44ffSToby Isaac 78894d6f44ffSToby Isaac Input Parameters: 7890bb7acecfSBarry Smith + dm - The `DM` 78910709b2feSToby Isaac . time - The time 78924d6f44ffSToby Isaac . funcs - The coordinate functions to evaluate, one per field 78934d6f44ffSToby Isaac . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 78944d6f44ffSToby Isaac - mode - The insertion mode for values 78954d6f44ffSToby Isaac 78964d6f44ffSToby Isaac Output Parameter: 78974d6f44ffSToby Isaac . X - vector 78984d6f44ffSToby Isaac 78994d6f44ffSToby Isaac Calling sequence of func: 790077b739a6SMatthew Knepley $ func(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx); 79014d6f44ffSToby Isaac 79024d6f44ffSToby Isaac + dim - The spatial dimension 79038ec8862eSJed Brown . time - The time at which to sample 79044d6f44ffSToby Isaac . x - The coordinates 790577b739a6SMatthew Knepley . Nc - The number of components 79064d6f44ffSToby Isaac . u - The output field values 79074d6f44ffSToby Isaac - ctx - optional user-defined function context 79084d6f44ffSToby Isaac 79094d6f44ffSToby Isaac Level: developer 79104d6f44ffSToby Isaac 7911bb7acecfSBarry Smith Developer Notes: 7912bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 7913bb7acecfSBarry Smith 7914bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 7915bb7acecfSBarry Smith 7916db781477SPatrick Sanan .seealso: `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 79174d6f44ffSToby Isaac @*/ 7918d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFunction(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec X) 7919d71ae5a4SJacob Faibussowitsch { 79204d6f44ffSToby Isaac Vec localX; 79214d6f44ffSToby Isaac 79224d6f44ffSToby Isaac PetscFunctionBegin; 79234d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 79249566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 79259566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, mode, localX)); 79269566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 79279566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 79289566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 79294d6f44ffSToby Isaac PetscFunctionReturn(0); 79304d6f44ffSToby Isaac } 79314d6f44ffSToby Isaac 7932a6e0b375SMatthew G. Knepley /*@C 7933bb7acecfSBarry Smith DMProjectFunctionLocal - This projects the given function into the function space provided by a `DM`, putting the coefficients in a local vector. 7934a6e0b375SMatthew G. Knepley 7935a6e0b375SMatthew G. Knepley Not collective 7936a6e0b375SMatthew G. Knepley 7937a6e0b375SMatthew G. Knepley Input Parameters: 7938bb7acecfSBarry Smith + dm - The `DM` 7939a6e0b375SMatthew G. Knepley . time - The time 7940a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 7941a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 7942a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 7943a6e0b375SMatthew G. Knepley 7944a6e0b375SMatthew G. Knepley Output Parameter: 7945a6e0b375SMatthew G. Knepley . localX - vector 7946a6e0b375SMatthew G. Knepley 7947a6e0b375SMatthew G. Knepley Calling sequence of func: 794877b739a6SMatthew Knepley $ func(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx); 7949a6e0b375SMatthew G. Knepley 7950a6e0b375SMatthew G. Knepley + dim - The spatial dimension 7951a6e0b375SMatthew G. Knepley . x - The coordinates 795277b739a6SMatthew Knepley . Nc - The number of components 7953a6e0b375SMatthew G. Knepley . u - The output field values 7954a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 7955a6e0b375SMatthew G. Knepley 7956a6e0b375SMatthew G. Knepley Level: developer 7957a6e0b375SMatthew G. Knepley 7958bb7acecfSBarry Smith Developer Notes: 7959bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 7960bb7acecfSBarry Smith 7961bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 7962bb7acecfSBarry Smith 7963db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 7964a6e0b375SMatthew G. Knepley @*/ 7965d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec localX) 7966d71ae5a4SJacob Faibussowitsch { 79674d6f44ffSToby Isaac PetscFunctionBegin; 79684d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7969064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 79709566063dSJacob Faibussowitsch PetscCall((dm->ops->projectfunctionlocal)(dm, time, funcs, ctxs, mode, localX)); 79714d6f44ffSToby Isaac PetscFunctionReturn(0); 79724d6f44ffSToby Isaac } 79734d6f44ffSToby Isaac 7974a6e0b375SMatthew G. Knepley /*@C 7975bb7acecfSBarry Smith DMProjectFunctionLabel - This projects the given function into the function space provided by the `DM`, putting the coefficients in a global vector, setting values only for points in the given label. 7976a6e0b375SMatthew G. Knepley 7977bb7acecfSBarry Smith Collective on dm 7978a6e0b375SMatthew G. Knepley 7979a6e0b375SMatthew G. Knepley Input Parameters: 7980bb7acecfSBarry Smith + dm - The `DM` 7981a6e0b375SMatthew G. Knepley . time - The time 7982bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 7983a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 7984bb7acecfSBarry Smith . ctxs - Optional array of contexts to pass to each coordinate function. ctxs may be null. 7985a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 7986a6e0b375SMatthew G. Knepley 7987a6e0b375SMatthew G. Knepley Output Parameter: 7988a6e0b375SMatthew G. Knepley . X - vector 7989a6e0b375SMatthew G. Knepley 7990a6e0b375SMatthew G. Knepley Calling sequence of func: 799177b739a6SMatthew Knepley $ func(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx); 7992a6e0b375SMatthew G. Knepley 7993a6e0b375SMatthew G. Knepley + dim - The spatial dimension 7994a6e0b375SMatthew G. Knepley . x - The coordinates 799577b739a6SMatthew Knepley . Nc - The number of components 7996a6e0b375SMatthew G. Knepley . u - The output field values 7997a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 7998a6e0b375SMatthew G. Knepley 7999a6e0b375SMatthew G. Knepley Level: developer 8000a6e0b375SMatthew G. Knepley 8001bb7acecfSBarry Smith Developer Notes: 8002bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8003bb7acecfSBarry Smith 8004bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8005bb7acecfSBarry Smith 8006db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`, `DMComputeL2Diff()` 8007a6e0b375SMatthew G. Knepley @*/ 8008d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec X) 8009d71ae5a4SJacob Faibussowitsch { 80102c53366bSMatthew G. Knepley Vec localX; 80112c53366bSMatthew G. Knepley 80122c53366bSMatthew G. Knepley PetscFunctionBegin; 80132c53366bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 80149566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 80159566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX)); 80169566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 80179566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 80189566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 80192c53366bSMatthew G. Knepley PetscFunctionReturn(0); 80202c53366bSMatthew G. Knepley } 80212c53366bSMatthew G. Knepley 8022a6e0b375SMatthew G. Knepley /*@C 8023bb7acecfSBarry Smith DMProjectFunctionLabelLocal - This projects the given function into the function space provided by the `DM`, putting the coefficients in a local vector, setting values only for points in the given label. 8024a6e0b375SMatthew G. Knepley 8025a6e0b375SMatthew G. Knepley Not collective 8026a6e0b375SMatthew G. Knepley 8027a6e0b375SMatthew G. Knepley Input Parameters: 8028bb7acecfSBarry Smith + dm - The `DM` 8029a6e0b375SMatthew G. Knepley . time - The time 8030bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8031a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8032a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 8033a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8034a6e0b375SMatthew G. Knepley 8035a6e0b375SMatthew G. Knepley Output Parameter: 8036a6e0b375SMatthew G. Knepley . localX - vector 8037a6e0b375SMatthew G. Knepley 8038a6e0b375SMatthew G. Knepley Calling sequence of func: 803977b739a6SMatthew Knepley $ func(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx); 8040a6e0b375SMatthew G. Knepley 8041a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8042a6e0b375SMatthew G. Knepley . x - The coordinates 804377b739a6SMatthew Knepley . Nc - The number of components 8044a6e0b375SMatthew G. Knepley . u - The output field values 8045a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8046a6e0b375SMatthew G. Knepley 8047a6e0b375SMatthew G. Knepley Level: developer 8048a6e0b375SMatthew G. Knepley 8049bb7acecfSBarry Smith Developer Notes: 8050bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8051bb7acecfSBarry Smith 8052bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8053bb7acecfSBarry Smith 8054db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 8055a6e0b375SMatthew G. Knepley @*/ 8056d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec localX) 8057d71ae5a4SJacob Faibussowitsch { 80584d6f44ffSToby Isaac PetscFunctionBegin; 80594d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8060064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 80619566063dSJacob Faibussowitsch PetscCall((dm->ops->projectfunctionlabellocal)(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX)); 80624d6f44ffSToby Isaac PetscFunctionReturn(0); 80634d6f44ffSToby Isaac } 80642716604bSToby Isaac 8065a6e0b375SMatthew G. Knepley /*@C 8066bb7acecfSBarry Smith DMProjectFieldLocal - This projects the given function of the input fields into the function space provided by the `DM`, putting the coefficients in a local vector. 8067a6e0b375SMatthew G. Knepley 8068a6e0b375SMatthew G. Knepley Not collective 8069a6e0b375SMatthew G. Knepley 8070a6e0b375SMatthew G. Knepley Input Parameters: 8071bb7acecfSBarry Smith + dm - The `DM` 8072a6e0b375SMatthew G. Knepley . time - The time 8073a6e0b375SMatthew G. Knepley . localU - The input field vector 8074a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8075a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8076a6e0b375SMatthew G. Knepley 8077a6e0b375SMatthew G. Knepley Output Parameter: 8078a6e0b375SMatthew G. Knepley . localX - The output vector 8079a6e0b375SMatthew G. Knepley 8080a6e0b375SMatthew G. Knepley Calling sequence of func: 8081a6e0b375SMatthew G. Knepley $ func(PetscInt dim, PetscInt Nf, PetscInt NfAux, 8082a6e0b375SMatthew G. Knepley $ const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 8083a6e0b375SMatthew G. Knepley $ const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 8084a6e0b375SMatthew G. Knepley $ PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]); 8085a6e0b375SMatthew G. Knepley 8086a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8087a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8088a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8089a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8090a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8091a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8092a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8093a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8094a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8095a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8096a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8097a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8098a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8099a6e0b375SMatthew G. Knepley . t - The current time 8100a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8101a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8102a6e0b375SMatthew G. Knepley . constants - The value of each constant 8103a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8104a6e0b375SMatthew G. Knepley 8105bb7acecfSBarry Smith Note: 8106bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8107bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8108bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8109a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8110a6e0b375SMatthew G. Knepley 8111a6e0b375SMatthew G. Knepley Level: intermediate 8112a6e0b375SMatthew G. Knepley 8113bb7acecfSBarry Smith Developer Notes: 8114bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8115bb7acecfSBarry Smith 8116bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8117bb7acecfSBarry Smith 8118db781477SPatrick Sanan .seealso: `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8119a6e0b375SMatthew G. Knepley @*/ 8120d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFieldLocal(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), InsertMode mode, Vec localX) 8121d71ae5a4SJacob Faibussowitsch { 81228c6c5593SMatthew G. Knepley PetscFunctionBegin; 81238c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 81248c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(localU, VEC_CLASSID, 3); 81258c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 81269566063dSJacob Faibussowitsch PetscCall((dm->ops->projectfieldlocal)(dm, time, localU, funcs, mode, localX)); 81278c6c5593SMatthew G. Knepley PetscFunctionReturn(0); 81288c6c5593SMatthew G. Knepley } 81298c6c5593SMatthew G. Knepley 8130a6e0b375SMatthew G. Knepley /*@C 8131a6e0b375SMatthew G. Knepley DMProjectFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain specified by the label. 8132a6e0b375SMatthew G. Knepley 8133a6e0b375SMatthew G. Knepley Not collective 8134a6e0b375SMatthew G. Knepley 8135a6e0b375SMatthew G. Knepley Input Parameters: 8136bb7acecfSBarry Smith + dm - The `DM` 8137a6e0b375SMatthew G. Knepley . time - The time 8138bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8139a6e0b375SMatthew G. Knepley . numIds - The number of label ids to use 8140a6e0b375SMatthew G. Knepley . ids - The label ids to use for marking 8141bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 8142a6e0b375SMatthew G. Knepley . comps - The components to set in the output, or NULL for all components 8143a6e0b375SMatthew G. Knepley . localU - The input field vector 8144a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8145a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8146a6e0b375SMatthew G. Knepley 8147a6e0b375SMatthew G. Knepley Output Parameter: 8148a6e0b375SMatthew G. Knepley . localX - The output vector 8149a6e0b375SMatthew G. Knepley 8150a6e0b375SMatthew G. Knepley Calling sequence of func: 8151a6e0b375SMatthew G. Knepley $ func(PetscInt dim, PetscInt Nf, PetscInt NfAux, 8152a6e0b375SMatthew G. Knepley $ const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 8153a6e0b375SMatthew G. Knepley $ const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 8154a6e0b375SMatthew G. Knepley $ PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]); 8155a6e0b375SMatthew G. Knepley 8156a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8157a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8158a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8159a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8160a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8161a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8162a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8163a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8164a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8165a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8166a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8167a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8168a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8169a6e0b375SMatthew G. Knepley . t - The current time 8170a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8171a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8172a6e0b375SMatthew G. Knepley . constants - The value of each constant 8173a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8174a6e0b375SMatthew G. Knepley 8175bb7acecfSBarry Smith Note: 8176bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8177bb7acecfSBarry Smith The input `DM`, attached to localU, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8178bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8179a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8180a6e0b375SMatthew G. Knepley 8181a6e0b375SMatthew G. Knepley Level: intermediate 8182a6e0b375SMatthew G. Knepley 8183bb7acecfSBarry Smith Developer Notes: 8184bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8185bb7acecfSBarry Smith 8186bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8187bb7acecfSBarry Smith 8188d29d7c6eSMatthew G. Knepley .seealso: `DMProjectField()`, `DMProjectFieldLabel()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8189a6e0b375SMatthew G. Knepley @*/ 8190d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), InsertMode mode, Vec localX) 8191d71ae5a4SJacob Faibussowitsch { 81928c6c5593SMatthew G. Knepley PetscFunctionBegin; 81938c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8194064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8195064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 81969566063dSJacob Faibussowitsch PetscCall((dm->ops->projectfieldlabellocal)(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX)); 81978c6c5593SMatthew G. Knepley PetscFunctionReturn(0); 81988c6c5593SMatthew G. Knepley } 81998c6c5593SMatthew G. Knepley 82002716604bSToby Isaac /*@C 8201d29d7c6eSMatthew G. Knepley DMProjectFieldLabel - This projects the given function of the input fields into the function space provided, putting the coefficients in a global vector, calculating only over the portion of the domain specified by the label. 8202d29d7c6eSMatthew G. Knepley 8203d29d7c6eSMatthew G. Knepley Not collective 8204d29d7c6eSMatthew G. Knepley 8205d29d7c6eSMatthew G. Knepley Input Parameters: 8206bb7acecfSBarry Smith + dm - The `DM` 8207d29d7c6eSMatthew G. Knepley . time - The time 8208bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8209d29d7c6eSMatthew G. Knepley . numIds - The number of label ids to use 8210d29d7c6eSMatthew G. Knepley . ids - The label ids to use for marking 8211bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 8212d29d7c6eSMatthew G. Knepley . comps - The components to set in the output, or NULL for all components 8213d29d7c6eSMatthew G. Knepley . U - The input field vector 8214d29d7c6eSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8215d29d7c6eSMatthew G. Knepley - mode - The insertion mode for values 8216d29d7c6eSMatthew G. Knepley 8217d29d7c6eSMatthew G. Knepley Output Parameter: 8218d29d7c6eSMatthew G. Knepley . X - The output vector 8219d29d7c6eSMatthew G. Knepley 8220d29d7c6eSMatthew G. Knepley Calling sequence of func: 8221d29d7c6eSMatthew G. Knepley $ func(PetscInt dim, PetscInt Nf, PetscInt NfAux, 8222d29d7c6eSMatthew G. Knepley $ const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 8223d29d7c6eSMatthew G. Knepley $ const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 8224d29d7c6eSMatthew G. Knepley $ PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]); 8225d29d7c6eSMatthew G. Knepley 8226d29d7c6eSMatthew G. Knepley + dim - The spatial dimension 8227d29d7c6eSMatthew G. Knepley . Nf - The number of input fields 8228d29d7c6eSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8229d29d7c6eSMatthew G. Knepley . uOff - The offset of each field in u[] 8230d29d7c6eSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8231d29d7c6eSMatthew G. Knepley . u - The field values at this point in space 8232d29d7c6eSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8233d29d7c6eSMatthew G. Knepley . u_x - The field derivatives at this point in space 8234d29d7c6eSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8235d29d7c6eSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8236d29d7c6eSMatthew G. Knepley . a - The auxiliary field values at this point in space 8237d29d7c6eSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8238d29d7c6eSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8239d29d7c6eSMatthew G. Knepley . t - The current time 8240d29d7c6eSMatthew G. Knepley . x - The coordinates of this point 8241d29d7c6eSMatthew G. Knepley . numConstants - The number of constants 8242d29d7c6eSMatthew G. Knepley . constants - The value of each constant 8243d29d7c6eSMatthew G. Knepley - f - The value of the function at this point in space 8244d29d7c6eSMatthew G. Knepley 8245bb7acecfSBarry Smith Note: 8246bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8247bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8248bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8249d29d7c6eSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8250d29d7c6eSMatthew G. Knepley 8251d29d7c6eSMatthew G. Knepley Level: intermediate 8252d29d7c6eSMatthew G. Knepley 8253bb7acecfSBarry Smith Developer Notes: 8254bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8255bb7acecfSBarry Smith 8256bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8257bb7acecfSBarry Smith 8258d29d7c6eSMatthew G. Knepley .seealso: `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8259d29d7c6eSMatthew G. Knepley @*/ 8260d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec U, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), InsertMode mode, Vec X) 8261d71ae5a4SJacob Faibussowitsch { 8262d29d7c6eSMatthew G. Knepley DM dmIn; 8263d29d7c6eSMatthew G. Knepley Vec localU, localX; 8264d29d7c6eSMatthew G. Knepley 8265d29d7c6eSMatthew G. Knepley PetscFunctionBegin; 8266d29d7c6eSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8267d29d7c6eSMatthew G. Knepley PetscCall(VecGetDM(U, &dmIn)); 8268d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dmIn, &localU)); 8269d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &localX)); 827072fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalBegin(dmIn, U, mode, localU)); 827172fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalEnd(dmIn, U, mode, localU)); 8272d29d7c6eSMatthew G. Knepley PetscCall(DMProjectFieldLabelLocal(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX)); 8273d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 8274d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 8275d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &localX)); 8276d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dmIn, &localU)); 8277d29d7c6eSMatthew G. Knepley PetscFunctionReturn(0); 8278d29d7c6eSMatthew G. Knepley } 8279d29d7c6eSMatthew G. Knepley 8280d29d7c6eSMatthew G. Knepley /*@C 8281ece3a9fcSMatthew G. Knepley DMProjectBdFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain boundary specified by the label. 8282ece3a9fcSMatthew G. Knepley 8283ece3a9fcSMatthew G. Knepley Not collective 8284ece3a9fcSMatthew G. Knepley 8285ece3a9fcSMatthew G. Knepley Input Parameters: 8286bb7acecfSBarry Smith + dm - The `DM` 8287ece3a9fcSMatthew G. Knepley . time - The time 8288bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain boundary to output 8289ece3a9fcSMatthew G. Knepley . numIds - The number of label ids to use 8290ece3a9fcSMatthew G. Knepley . ids - The label ids to use for marking 8291bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 8292ece3a9fcSMatthew G. Knepley . comps - The components to set in the output, or NULL for all components 8293ece3a9fcSMatthew G. Knepley . localU - The input field vector 8294ece3a9fcSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8295ece3a9fcSMatthew G. Knepley - mode - The insertion mode for values 8296ece3a9fcSMatthew G. Knepley 8297ece3a9fcSMatthew G. Knepley Output Parameter: 8298ece3a9fcSMatthew G. Knepley . localX - The output vector 8299ece3a9fcSMatthew G. Knepley 8300ece3a9fcSMatthew G. Knepley Calling sequence of func: 8301ece3a9fcSMatthew G. Knepley $ func(PetscInt dim, PetscInt Nf, PetscInt NfAux, 8302ece3a9fcSMatthew G. Knepley $ const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 8303ece3a9fcSMatthew G. Knepley $ const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 8304ece3a9fcSMatthew G. Knepley $ PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]); 8305ece3a9fcSMatthew G. Knepley 8306ece3a9fcSMatthew G. Knepley + dim - The spatial dimension 8307ece3a9fcSMatthew G. Knepley . Nf - The number of input fields 8308ece3a9fcSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8309ece3a9fcSMatthew G. Knepley . uOff - The offset of each field in u[] 8310ece3a9fcSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8311ece3a9fcSMatthew G. Knepley . u - The field values at this point in space 8312ece3a9fcSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8313ece3a9fcSMatthew G. Knepley . u_x - The field derivatives at this point in space 8314ece3a9fcSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8315ece3a9fcSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8316ece3a9fcSMatthew G. Knepley . a - The auxiliary field values at this point in space 8317ece3a9fcSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8318ece3a9fcSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8319ece3a9fcSMatthew G. Knepley . t - The current time 8320ece3a9fcSMatthew G. Knepley . x - The coordinates of this point 8321ece3a9fcSMatthew G. Knepley . n - The face normal 8322ece3a9fcSMatthew G. Knepley . numConstants - The number of constants 8323ece3a9fcSMatthew G. Knepley . constants - The value of each constant 8324ece3a9fcSMatthew G. Knepley - f - The value of the function at this point in space 8325ece3a9fcSMatthew G. Knepley 8326ece3a9fcSMatthew G. Knepley Note: 8327bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8328bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8329bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8330ece3a9fcSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8331ece3a9fcSMatthew G. Knepley 8332ece3a9fcSMatthew G. Knepley Level: intermediate 8333ece3a9fcSMatthew G. Knepley 8334bb7acecfSBarry Smith Developer Notes: 8335bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8336bb7acecfSBarry Smith 8337bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8338bb7acecfSBarry Smith 8339db781477SPatrick Sanan .seealso: `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8340ece3a9fcSMatthew G. Knepley @*/ 8341d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectBdFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), InsertMode mode, Vec localX) 8342d71ae5a4SJacob Faibussowitsch { 8343ece3a9fcSMatthew G. Knepley PetscFunctionBegin; 8344ece3a9fcSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8345064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8346064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 83479566063dSJacob Faibussowitsch PetscCall((dm->ops->projectbdfieldlabellocal)(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX)); 8348ece3a9fcSMatthew G. Knepley PetscFunctionReturn(0); 8349ece3a9fcSMatthew G. Knepley } 8350ece3a9fcSMatthew G. Knepley 8351ece3a9fcSMatthew G. Knepley /*@C 83522716604bSToby Isaac DMComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 83532716604bSToby Isaac 8354bb7acecfSBarry Smith Collective on dm 8355bb7acecfSBarry Smith 83562716604bSToby Isaac Input Parameters: 8357bb7acecfSBarry Smith + dm - The `DM` 83580709b2feSToby Isaac . time - The time 83592716604bSToby Isaac . funcs - The functions to evaluate for each field component 83602716604bSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8361574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 83622716604bSToby Isaac 83632716604bSToby Isaac Output Parameter: 83642716604bSToby Isaac . diff - The diff ||u - u_h||_2 83652716604bSToby Isaac 83662716604bSToby Isaac Level: developer 83672716604bSToby Isaac 8368bb7acecfSBarry Smith Developer Notes: 8369bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8370bb7acecfSBarry Smith 8371bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8372bb7acecfSBarry Smith 8373db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 83742716604bSToby Isaac @*/ 8375d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 8376d71ae5a4SJacob Faibussowitsch { 83772716604bSToby Isaac PetscFunctionBegin; 83782716604bSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8379b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 83809566063dSJacob Faibussowitsch PetscCall((dm->ops->computel2diff)(dm, time, funcs, ctxs, X, diff)); 83812716604bSToby Isaac PetscFunctionReturn(0); 83822716604bSToby Isaac } 8383b698f381SToby Isaac 8384b698f381SToby Isaac /*@C 8385b698f381SToby Isaac DMComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h. 8386b698f381SToby Isaac 8387d083f849SBarry Smith Collective on dm 8388d083f849SBarry Smith 8389b698f381SToby Isaac Input Parameters: 8390bb7acecfSBarry Smith + dm - The `DM` 8391b698f381SToby Isaac , time - The time 8392b698f381SToby Isaac . funcs - The gradient functions to evaluate for each field component 8393b698f381SToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8394574a98acSMatthew G. Knepley . X - The coefficient vector u_h, a global vector 8395b698f381SToby Isaac - n - The vector to project along 8396b698f381SToby Isaac 8397b698f381SToby Isaac Output Parameter: 8398b698f381SToby Isaac . diff - The diff ||(grad u - grad u_h) . n||_2 8399b698f381SToby Isaac 8400b698f381SToby Isaac Level: developer 8401b698f381SToby Isaac 8402bb7acecfSBarry Smith Developer Notes: 8403bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8404bb7acecfSBarry Smith 8405bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8406bb7acecfSBarry Smith 8407bb7acecfSBarry Smith .seealso: `DMProjectFunction()`, `DMComputeL2Diff()`, `DMComputeL2FieldDiff()` 8408b698f381SToby Isaac @*/ 8409d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 8410d71ae5a4SJacob Faibussowitsch { 8411b698f381SToby Isaac PetscFunctionBegin; 8412b698f381SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8413b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 84149566063dSJacob Faibussowitsch PetscCall((dm->ops->computel2gradientdiff)(dm, time, funcs, ctxs, X, n, diff)); 8415b698f381SToby Isaac PetscFunctionReturn(0); 8416b698f381SToby Isaac } 8417b698f381SToby Isaac 84182a16baeaSToby Isaac /*@C 84192a16baeaSToby Isaac DMComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components. 84202a16baeaSToby Isaac 8421d083f849SBarry Smith Collective on dm 8422d083f849SBarry Smith 84232a16baeaSToby Isaac Input Parameters: 8424bb7acecfSBarry Smith + dm - The `DM` 84252a16baeaSToby Isaac . time - The time 84262a16baeaSToby Isaac . funcs - The functions to evaluate for each field component 84272a16baeaSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8428574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 84292a16baeaSToby Isaac 84302a16baeaSToby Isaac Output Parameter: 84312a16baeaSToby Isaac . diff - The array of differences, ||u^f - u^f_h||_2 84322a16baeaSToby Isaac 84332a16baeaSToby Isaac Level: developer 84342a16baeaSToby Isaac 8435bb7acecfSBarry Smith Developer Notes: 8436bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8437bb7acecfSBarry Smith 8438bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8439bb7acecfSBarry Smith 8440db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 84412a16baeaSToby Isaac @*/ 8442d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[]) 8443d71ae5a4SJacob Faibussowitsch { 84442a16baeaSToby Isaac PetscFunctionBegin; 84452a16baeaSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 84462a16baeaSToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 84479566063dSJacob Faibussowitsch PetscCall((dm->ops->computel2fielddiff)(dm, time, funcs, ctxs, X, diff)); 84482a16baeaSToby Isaac PetscFunctionReturn(0); 84492a16baeaSToby Isaac } 84502a16baeaSToby Isaac 8451df0b854cSToby Isaac /*@C 8452bb7acecfSBarry Smith DMGetNeighbors - Gets an array containing the MPI ranks of all the processes neighbors 8453502a2867SDave May 8454502a2867SDave May Not Collective 8455502a2867SDave May 8456502a2867SDave May Input Parameter: 8457bb7acecfSBarry Smith . dm - The `DM` 8458502a2867SDave May 84590a19bb7dSprj- Output Parameters: 84600a19bb7dSprj- + nranks - the number of neighbours 84610a19bb7dSprj- - ranks - the neighbors ranks 8462502a2867SDave May 8463bb7acecfSBarry Smith Note: 8464bb7acecfSBarry Smith Do not free the array, it is freed when the `DM` is destroyed. 8465502a2867SDave May 8466502a2867SDave May Level: beginner 8467502a2867SDave May 8468db781477SPatrick Sanan .seealso: `DMDAGetNeighbors()`, `PetscSFGetRootRanks()` 8469502a2867SDave May @*/ 8470d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNeighbors(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[]) 8471d71ae5a4SJacob Faibussowitsch { 8472502a2867SDave May PetscFunctionBegin; 8473502a2867SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 84749566063dSJacob Faibussowitsch PetscCall((dm->ops->getneighbors)(dm, nranks, ranks)); 8475502a2867SDave May PetscFunctionReturn(0); 8476502a2867SDave May } 8477502a2867SDave May 8478531c7667SBarry Smith #include <petsc/private/matimpl.h> /* Needed because of coloring->ctype below */ 8479531c7667SBarry Smith 8480531c7667SBarry Smith /* 8481531c7667SBarry Smith Converts the input vector to a ghosted vector and then calls the standard coloring code. 8482531c7667SBarry Smith This has be a different function because it requires DM which is not defined in the Mat library 8483531c7667SBarry Smith */ 8484d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringApply_AIJDM(Mat J, MatFDColoring coloring, Vec x1, void *sctx) 8485d71ae5a4SJacob Faibussowitsch { 8486531c7667SBarry Smith PetscFunctionBegin; 8487531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8488531c7667SBarry Smith Vec x1local; 8489531c7667SBarry Smith DM dm; 84909566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 84917a8be351SBarry Smith PetscCheck(dm, PetscObjectComm((PetscObject)J), PETSC_ERR_ARG_INCOMP, "IS_COLORING_LOCAL requires a DM"); 84929566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &x1local)); 84939566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, x1, INSERT_VALUES, x1local)); 84949566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, x1, INSERT_VALUES, x1local)); 8495531c7667SBarry Smith x1 = x1local; 8496531c7667SBarry Smith } 84979566063dSJacob Faibussowitsch PetscCall(MatFDColoringApply_AIJ(J, coloring, x1, sctx)); 8498531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8499531c7667SBarry Smith DM dm; 85009566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 85019566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &x1)); 8502531c7667SBarry Smith } 8503531c7667SBarry Smith PetscFunctionReturn(0); 8504531c7667SBarry Smith } 8505531c7667SBarry Smith 8506531c7667SBarry Smith /*@ 8507bb7acecfSBarry Smith MatFDColoringUseDM - allows a `MatFDColoring` object to use the `DM` associated with the matrix to compute a `IS_COLORING_LOCAL` coloring 8508531c7667SBarry Smith 8509531c7667SBarry Smith Input Parameter: 8510bb7acecfSBarry Smith . coloring - the `MatFDColoring` object 8511531c7667SBarry Smith 8512bb7acecfSBarry Smith Developer Note: 8513bb7acecfSBarry Smith this routine exists because the PETSc `Mat` library does not know about the `DM` objects 8514531c7667SBarry Smith 85151b266c99SBarry Smith Level: advanced 85161b266c99SBarry Smith 8517db781477SPatrick Sanan .seealso: `MatFDColoring`, `MatFDColoringCreate()`, `ISColoringType` 8518531c7667SBarry Smith @*/ 8519d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringUseDM(Mat coloring, MatFDColoring fdcoloring) 8520d71ae5a4SJacob Faibussowitsch { 8521531c7667SBarry Smith PetscFunctionBegin; 8522531c7667SBarry Smith coloring->ops->fdcoloringapply = MatFDColoringApply_AIJDM; 8523531c7667SBarry Smith PetscFunctionReturn(0); 8524531c7667SBarry Smith } 85258320bc6fSPatrick Sanan 85268320bc6fSPatrick Sanan /*@ 8527bb7acecfSBarry Smith DMGetCompatibility - determine if two `DM`s are compatible 85288320bc6fSPatrick Sanan 85298320bc6fSPatrick Sanan Collective 85308320bc6fSPatrick Sanan 85318320bc6fSPatrick Sanan Input Parameters: 8532bb7acecfSBarry Smith + dm1 - the first `DM` 8533bb7acecfSBarry Smith - dm2 - the second `DM` 85348320bc6fSPatrick Sanan 85358320bc6fSPatrick Sanan Output Parameters: 8536bb7acecfSBarry Smith + compatible - whether or not the two `DM`s are compatible 8537bb7acecfSBarry Smith - set - whether or not the compatible value was actually determined and set 85388320bc6fSPatrick Sanan 85398320bc6fSPatrick Sanan Notes: 8540bb7acecfSBarry Smith Two `DM`s are deemed compatible if they represent the same parallel decomposition 85413d862458SPatrick Sanan of the same topology. This implies that the section (field data) on one 85428320bc6fSPatrick Sanan "makes sense" with respect to the topology and parallel decomposition of the other. 8543bb7acecfSBarry Smith Loosely speaking, compatible `DM`s represent the same domain and parallel 85443d862458SPatrick Sanan decomposition, but hold different data. 85458320bc6fSPatrick Sanan 85468320bc6fSPatrick Sanan Typically, one would confirm compatibility if intending to simultaneously iterate 8547bb7acecfSBarry Smith over a pair of vectors obtained from different `DM`s. 85488320bc6fSPatrick Sanan 8549bb7acecfSBarry Smith For example, two `DMDA` objects are compatible if they have the same local 85508320bc6fSPatrick Sanan and global sizes and the same stencil width. They can have different numbers 85518320bc6fSPatrick Sanan of degrees of freedom per node. Thus, one could use the node numbering from 8552bb7acecfSBarry Smith either `DM` in bounds for a loop over vectors derived from either `DM`. 85538320bc6fSPatrick Sanan 8554bb7acecfSBarry Smith Consider the operation of summing data living on a 2-dof `DMDA` to data living 8555bb7acecfSBarry Smith on a 1-dof `DMDA`, which should be compatible, as in the following snippet. 85568320bc6fSPatrick Sanan .vb 85578320bc6fSPatrick Sanan ... 85589566063dSJacob Faibussowitsch PetscCall(DMGetCompatibility(da1,da2,&compatible,&set)); 85598320bc6fSPatrick Sanan if (set && compatible) { 85609566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da1,vec1,&arr1)); 85619566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da2,vec2,&arr2)); 85629566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da1,&x,&y,NULL,&m,&n,NULL)); 85638320bc6fSPatrick Sanan for (j=y; j<y+n; ++j) { 85648320bc6fSPatrick Sanan for (i=x; i<x+m, ++i) { 85658320bc6fSPatrick Sanan arr1[j][i][0] = arr2[j][i][0] + arr2[j][i][1]; 85668320bc6fSPatrick Sanan } 85678320bc6fSPatrick Sanan } 85689566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da1,vec1,&arr1)); 85699566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da2,vec2,&arr2)); 85708320bc6fSPatrick Sanan } else { 85718320bc6fSPatrick Sanan SETERRQ(PetscObjectComm((PetscObject)da1,PETSC_ERR_ARG_INCOMP,"DMDA objects incompatible"); 85728320bc6fSPatrick Sanan } 85738320bc6fSPatrick Sanan ... 85748320bc6fSPatrick Sanan .ve 85758320bc6fSPatrick Sanan 8576bb7acecfSBarry Smith Checking compatibility might be expensive for a given implementation of `DM`, 85778320bc6fSPatrick Sanan or might be impossible to unambiguously confirm or deny. For this reason, 85788320bc6fSPatrick Sanan this function may decline to determine compatibility, and hence users should 85798320bc6fSPatrick Sanan always check the "set" output parameter. 85808320bc6fSPatrick Sanan 8581bb7acecfSBarry Smith A `DM` is always compatible with itself. 85828320bc6fSPatrick Sanan 8583bb7acecfSBarry Smith In the current implementation, `DM`s which live on "unequal" communicators 85848320bc6fSPatrick Sanan (MPI_UNEQUAL in the terminology of MPI_Comm_compare()) are always deemed 85858320bc6fSPatrick Sanan incompatible. 85868320bc6fSPatrick Sanan 85878320bc6fSPatrick Sanan This function is labeled "Collective," as information about all subdomains 8588bb7acecfSBarry Smith is required on each rank. However, in `DM` implementations which store all this 85898320bc6fSPatrick Sanan information locally, this function may be merely "Logically Collective". 85908320bc6fSPatrick Sanan 8591bb7acecfSBarry Smith Developer Note: 8592bb7acecfSBarry Smith Compatibility is assumed to be a symmetric concept; `DM` A is compatible with `DM` B 85933d862458SPatrick Sanan iff B is compatible with A. Thus, this function checks the implementations 8594a5bc1bf3SBarry Smith of both dm and dmc (if they are of different types), attempting to determine 8595bb7acecfSBarry Smith compatibility. It is left to `DM` implementers to ensure that symmetry is 85968320bc6fSPatrick Sanan preserved. The simplest way to do this is, when implementing type-specific 85973d862458SPatrick Sanan logic for this function, is to check for existing logic in the implementation 8598bb7acecfSBarry Smith of other `DM` types and let *set = PETSC_FALSE if found. 85998320bc6fSPatrick Sanan 86008320bc6fSPatrick Sanan Level: advanced 86018320bc6fSPatrick Sanan 8602db781477SPatrick Sanan .seealso: `DM`, `DMDACreateCompatibleDMDA()`, `DMStagCreateCompatibleDMStag()` 86038320bc6fSPatrick Sanan @*/ 8604d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCompatibility(DM dm1, DM dm2, PetscBool *compatible, PetscBool *set) 8605d71ae5a4SJacob Faibussowitsch { 86068320bc6fSPatrick Sanan PetscMPIInt compareResult; 86078320bc6fSPatrick Sanan DMType type, type2; 86088320bc6fSPatrick Sanan PetscBool sameType; 86098320bc6fSPatrick Sanan 86108320bc6fSPatrick Sanan PetscFunctionBegin; 8611a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dm1, DM_CLASSID, 1); 86128320bc6fSPatrick Sanan PetscValidHeaderSpecific(dm2, DM_CLASSID, 2); 86138320bc6fSPatrick Sanan 86148320bc6fSPatrick Sanan /* Declare a DM compatible with itself */ 8615a5bc1bf3SBarry Smith if (dm1 == dm2) { 86168320bc6fSPatrick Sanan *set = PETSC_TRUE; 86178320bc6fSPatrick Sanan *compatible = PETSC_TRUE; 86188320bc6fSPatrick Sanan PetscFunctionReturn(0); 86198320bc6fSPatrick Sanan } 86208320bc6fSPatrick Sanan 86218320bc6fSPatrick Sanan /* Declare a DM incompatible with a DM that lives on an "unequal" 86228320bc6fSPatrick Sanan communicator. Note that this does not preclude compatibility with 86238320bc6fSPatrick Sanan DMs living on "congruent" or "similar" communicators, but this must be 86248320bc6fSPatrick Sanan determined by the implementation-specific logic */ 86259566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)dm1), PetscObjectComm((PetscObject)dm2), &compareResult)); 86268320bc6fSPatrick Sanan if (compareResult == MPI_UNEQUAL) { 86278320bc6fSPatrick Sanan *set = PETSC_TRUE; 86288320bc6fSPatrick Sanan *compatible = PETSC_FALSE; 86298320bc6fSPatrick Sanan PetscFunctionReturn(0); 86308320bc6fSPatrick Sanan } 86318320bc6fSPatrick Sanan 86328320bc6fSPatrick Sanan /* Pass to the implementation-specific routine, if one exists. */ 8633a5bc1bf3SBarry Smith if (dm1->ops->getcompatibility) { 8634dbbe0bcdSBarry Smith PetscUseTypeMethod(dm1, getcompatibility, dm2, compatible, set); 8635b9d85ea2SLisandro Dalcin if (*set) PetscFunctionReturn(0); 86368320bc6fSPatrick Sanan } 86378320bc6fSPatrick Sanan 8638a5bc1bf3SBarry Smith /* If dm1 and dm2 are of different types, then attempt to check compatibility 86398320bc6fSPatrick Sanan with an implementation of this function from dm2 */ 86409566063dSJacob Faibussowitsch PetscCall(DMGetType(dm1, &type)); 86419566063dSJacob Faibussowitsch PetscCall(DMGetType(dm2, &type2)); 86429566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(type, type2, &sameType)); 86438320bc6fSPatrick Sanan if (!sameType && dm2->ops->getcompatibility) { 8644dbbe0bcdSBarry Smith PetscUseTypeMethod(dm2, getcompatibility, dm1, compatible, set); /* Note argument order */ 86458320bc6fSPatrick Sanan } else { 86468320bc6fSPatrick Sanan *set = PETSC_FALSE; 86478320bc6fSPatrick Sanan } 86488320bc6fSPatrick Sanan PetscFunctionReturn(0); 86498320bc6fSPatrick Sanan } 8650c0f0dcc3SMatthew G. Knepley 8651c0f0dcc3SMatthew G. Knepley /*@C 8652bb7acecfSBarry Smith DMMonitorSet - Sets an additional monitor function that is to be used after a solve to monitor discretization performance. 8653c0f0dcc3SMatthew G. Knepley 8654bb7acecfSBarry Smith Logically Collective on dm 8655c0f0dcc3SMatthew G. Knepley 8656c0f0dcc3SMatthew G. Knepley Input Parameters: 8657bb7acecfSBarry Smith + DM - the `DM` 8658c0f0dcc3SMatthew G. Knepley . f - the monitor function 8659c0f0dcc3SMatthew G. Knepley . mctx - [optional] user-defined context for private data for the monitor routine (use NULL if no context is desired) 8660c0f0dcc3SMatthew G. Knepley - monitordestroy - [optional] routine that frees monitor context (may be NULL) 8661c0f0dcc3SMatthew G. Knepley 8662c0f0dcc3SMatthew G. Knepley Options Database Keys: 8663bb7acecfSBarry Smith - -dm_monitor_cancel - cancels all monitors that have been hardwired into a code by calls to `DMMonitorSet()`, but 8664c0f0dcc3SMatthew G. Knepley does not cancel those set via the options database. 8665c0f0dcc3SMatthew G. Knepley 8666bb7acecfSBarry Smith Note: 8667c0f0dcc3SMatthew G. Knepley Several different monitoring routines may be set by calling 8668bb7acecfSBarry Smith `DMMonitorSet()` multiple times or with `DMMonitorSetFromOptions()`; all will be called in the 8669c0f0dcc3SMatthew G. Knepley order in which they were set. 8670c0f0dcc3SMatthew G. Knepley 8671bb7acecfSBarry Smith Fortran Note: 8672bb7acecfSBarry Smith Only a single monitor function can be set for each `DM` object 8673bb7acecfSBarry Smith 8674bb7acecfSBarry Smith Developer Note: 8675bb7acecfSBarry Smith This API has a generic name but seems specific to a very particular aspect of the use of `DM` 8676c0f0dcc3SMatthew G. Knepley 8677c0f0dcc3SMatthew G. Knepley Level: intermediate 8678c0f0dcc3SMatthew G. Knepley 8679bb7acecfSBarry Smith .seealso: `DMMonitorCancel()`, `DMMonitorSetFromOptions()`, `DMMonitor()` 8680c0f0dcc3SMatthew G. Knepley @*/ 8681d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSet(DM dm, PetscErrorCode (*f)(DM, void *), void *mctx, PetscErrorCode (*monitordestroy)(void **)) 8682d71ae5a4SJacob Faibussowitsch { 8683c0f0dcc3SMatthew G. Knepley PetscInt m; 8684c0f0dcc3SMatthew G. Knepley 8685c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8686c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8687c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 8688c0f0dcc3SMatthew G. Knepley PetscBool identical; 8689c0f0dcc3SMatthew G. Knepley 86909566063dSJacob Faibussowitsch PetscCall(PetscMonitorCompare((PetscErrorCode(*)(void))f, mctx, monitordestroy, (PetscErrorCode(*)(void))dm->monitor[m], dm->monitorcontext[m], dm->monitordestroy[m], &identical)); 8691c0f0dcc3SMatthew G. Knepley if (identical) PetscFunctionReturn(0); 8692c0f0dcc3SMatthew G. Knepley } 86937a8be351SBarry Smith PetscCheck(dm->numbermonitors < MAXDMMONITORS, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many monitors set"); 8694c0f0dcc3SMatthew G. Knepley dm->monitor[dm->numbermonitors] = f; 8695c0f0dcc3SMatthew G. Knepley dm->monitordestroy[dm->numbermonitors] = monitordestroy; 8696c0f0dcc3SMatthew G. Knepley dm->monitorcontext[dm->numbermonitors++] = (void *)mctx; 8697c0f0dcc3SMatthew G. Knepley PetscFunctionReturn(0); 8698c0f0dcc3SMatthew G. Knepley } 8699c0f0dcc3SMatthew G. Knepley 8700c0f0dcc3SMatthew G. Knepley /*@ 8701bb7acecfSBarry Smith DMMonitorCancel - Clears all the monitor functions for a `DM` object. 8702c0f0dcc3SMatthew G. Knepley 8703bb7acecfSBarry Smith Logically Collective on dm 8704c0f0dcc3SMatthew G. Knepley 8705c0f0dcc3SMatthew G. Knepley Input Parameter: 8706c0f0dcc3SMatthew G. Knepley . dm - the DM 8707c0f0dcc3SMatthew G. Knepley 8708c0f0dcc3SMatthew G. Knepley Options Database Key: 8709c0f0dcc3SMatthew G. Knepley . -dm_monitor_cancel - cancels all monitors that have been hardwired 8710bb7acecfSBarry Smith into a code by calls to `DMonitorSet()`, but does not cancel those 8711c0f0dcc3SMatthew G. Knepley set via the options database 8712c0f0dcc3SMatthew G. Knepley 8713bb7acecfSBarry Smith Note: 8714bb7acecfSBarry Smith There is no way to clear one specific monitor from a `DM` object. 8715c0f0dcc3SMatthew G. Knepley 8716c0f0dcc3SMatthew G. Knepley Level: intermediate 8717c0f0dcc3SMatthew G. Knepley 8718bb7acecfSBarry Smith .seealso: `DMMonitorSet()`, `DMMonitorSetFromOptions()`, `DMMonitor()` 8719c0f0dcc3SMatthew G. Knepley @*/ 8720d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorCancel(DM dm) 8721d71ae5a4SJacob Faibussowitsch { 8722c0f0dcc3SMatthew G. Knepley PetscInt m; 8723c0f0dcc3SMatthew G. Knepley 8724c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8725c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8726c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 87279566063dSJacob Faibussowitsch if (dm->monitordestroy[m]) PetscCall((*dm->monitordestroy[m])(&dm->monitorcontext[m])); 8728c0f0dcc3SMatthew G. Knepley } 8729c0f0dcc3SMatthew G. Knepley dm->numbermonitors = 0; 8730c0f0dcc3SMatthew G. Knepley PetscFunctionReturn(0); 8731c0f0dcc3SMatthew G. Knepley } 8732c0f0dcc3SMatthew G. Knepley 8733c0f0dcc3SMatthew G. Knepley /*@C 8734c0f0dcc3SMatthew G. Knepley DMMonitorSetFromOptions - Sets a monitor function and viewer appropriate for the type indicated by the user 8735c0f0dcc3SMatthew G. Knepley 8736bb7acecfSBarry Smith Collective on dm 8737c0f0dcc3SMatthew G. Knepley 8738c0f0dcc3SMatthew G. Knepley Input Parameters: 8739bb7acecfSBarry Smith + dm - `DM` object you wish to monitor 8740c0f0dcc3SMatthew G. Knepley . name - the monitor type one is seeking 8741c0f0dcc3SMatthew G. Knepley . help - message indicating what monitoring is done 8742c0f0dcc3SMatthew G. Knepley . manual - manual page for the monitor 8743c0f0dcc3SMatthew G. Knepley . monitor - the monitor function 8744bb7acecfSBarry Smith - monitorsetup - a function that is called once ONLY if the user selected this monitor that may set additional features of the `DM` or `PetscViewer` objects 8745c0f0dcc3SMatthew G. Knepley 8746c0f0dcc3SMatthew G. Knepley Output Parameter: 8747c0f0dcc3SMatthew G. Knepley . flg - Flag set if the monitor was created 8748c0f0dcc3SMatthew G. Knepley 8749c0f0dcc3SMatthew G. Knepley Level: developer 8750c0f0dcc3SMatthew G. Knepley 8751db781477SPatrick Sanan .seealso: `PetscOptionsGetViewer()`, `PetscOptionsGetReal()`, `PetscOptionsHasName()`, `PetscOptionsGetString()`, 8752db781477SPatrick Sanan `PetscOptionsGetIntArray()`, `PetscOptionsGetRealArray()`, `PetscOptionsBool()` 8753db781477SPatrick Sanan `PetscOptionsInt()`, `PetscOptionsString()`, `PetscOptionsReal()`, `PetscOptionsBool()`, 8754db781477SPatrick Sanan `PetscOptionsName()`, `PetscOptionsBegin()`, `PetscOptionsEnd()`, `PetscOptionsHeadBegin()`, 8755c2e3fba1SPatrick Sanan `PetscOptionsStringArray()`, `PetscOptionsRealArray()`, `PetscOptionsScalar()`, 8756db781477SPatrick Sanan `PetscOptionsBoolGroupBegin()`, `PetscOptionsBoolGroup()`, `PetscOptionsBoolGroupEnd()`, 8757bb7acecfSBarry Smith `PetscOptionsFList()`, `PetscOptionsEList()`, `DMMonitor()`, `DMMonitorSet()` 8758c0f0dcc3SMatthew G. Knepley @*/ 8759d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSetFromOptions(DM dm, const char name[], const char help[], const char manual[], PetscErrorCode (*monitor)(DM, void *), PetscErrorCode (*monitorsetup)(DM, PetscViewerAndFormat *), PetscBool *flg) 8760d71ae5a4SJacob Faibussowitsch { 8761c0f0dcc3SMatthew G. Knepley PetscViewer viewer; 8762c0f0dcc3SMatthew G. Knepley PetscViewerFormat format; 8763c0f0dcc3SMatthew G. Knepley 8764c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8765c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 87669566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetViewer(PetscObjectComm((PetscObject)dm), ((PetscObject)dm)->options, ((PetscObject)dm)->prefix, name, &viewer, &format, flg)); 8767c0f0dcc3SMatthew G. Knepley if (*flg) { 8768c0f0dcc3SMatthew G. Knepley PetscViewerAndFormat *vf; 8769c0f0dcc3SMatthew G. Knepley 87709566063dSJacob Faibussowitsch PetscCall(PetscViewerAndFormatCreate(viewer, format, &vf)); 87719566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)viewer)); 87729566063dSJacob Faibussowitsch if (monitorsetup) PetscCall((*monitorsetup)(dm, vf)); 87739566063dSJacob Faibussowitsch PetscCall(DMMonitorSet(dm, (PetscErrorCode(*)(DM, void *))monitor, vf, (PetscErrorCode(*)(void **))PetscViewerAndFormatDestroy)); 8774c0f0dcc3SMatthew G. Knepley } 8775c0f0dcc3SMatthew G. Knepley PetscFunctionReturn(0); 8776c0f0dcc3SMatthew G. Knepley } 8777c0f0dcc3SMatthew G. Knepley 8778c0f0dcc3SMatthew G. Knepley /*@ 8779c0f0dcc3SMatthew G. Knepley DMMonitor - runs the user provided monitor routines, if they exist 8780c0f0dcc3SMatthew G. Knepley 8781bb7acecfSBarry Smith Collective on dm 8782c0f0dcc3SMatthew G. Knepley 8783c0f0dcc3SMatthew G. Knepley Input Parameters: 8784bb7acecfSBarry Smith . dm - The `DM` 8785c0f0dcc3SMatthew G. Knepley 8786c0f0dcc3SMatthew G. Knepley Level: developer 8787c0f0dcc3SMatthew G. Knepley 8788bb7acecfSBarry Smith Question: 8789bb7acecfSBarry Smith Note should indicate when during the life of the `DM` the monitor is run. It appears to be related to the discretization process seems rather specialized 8790bb7acecfSBarry Smith since some `DM` have no concept of discretization 8791bb7acecfSBarry Smith 8792bb7acecfSBarry Smith .seealso: `DMMonitorSet()`, `DMMonitorSetFromOptions()` 8793c0f0dcc3SMatthew G. Knepley @*/ 8794d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitor(DM dm) 8795d71ae5a4SJacob Faibussowitsch { 8796c0f0dcc3SMatthew G. Knepley PetscInt m; 8797c0f0dcc3SMatthew G. Knepley 8798c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8799c0f0dcc3SMatthew G. Knepley if (!dm) PetscFunctionReturn(0); 8800c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 880148a46eb9SPierre Jolivet for (m = 0; m < dm->numbermonitors; ++m) PetscCall((*dm->monitor[m])(dm, dm->monitorcontext[m])); 8802c0f0dcc3SMatthew G. Knepley PetscFunctionReturn(0); 8803c0f0dcc3SMatthew G. Knepley } 88042e4af2aeSMatthew G. Knepley 88052e4af2aeSMatthew G. Knepley /*@ 8806bb7acecfSBarry Smith DMComputeError - Computes the error assuming the user has provided the exact solution functions 88072e4af2aeSMatthew G. Knepley 8808bb7acecfSBarry Smith Collective on dm 88092e4af2aeSMatthew G. Knepley 88102e4af2aeSMatthew G. Knepley Input Parameters: 8811bb7acecfSBarry Smith + dm - The `DM` 88126b867d5aSJose E. Roman - sol - The solution vector 88132e4af2aeSMatthew G. Knepley 88146b867d5aSJose E. Roman Input/Output Parameter: 88156b867d5aSJose E. Roman . errors - An array of length Nf, the number of fields, or NULL for no output; on output 88166b867d5aSJose E. Roman contains the error in each field 88176b867d5aSJose E. Roman 88186b867d5aSJose E. Roman Output Parameter: 88196b867d5aSJose E. Roman . errorVec - A vector to hold the cellwise error (may be NULL) 88202e4af2aeSMatthew G. Knepley 8821bb7acecfSBarry Smith Note: 8822bb7acecfSBarry Smith The exact solutions come from the `PetscDS` object, and the time comes from `DMGetOutputSequenceNumber()`. 88232e4af2aeSMatthew G. Knepley 88242e4af2aeSMatthew G. Knepley Level: developer 88252e4af2aeSMatthew G. Knepley 8826db781477SPatrick Sanan .seealso: `DMMonitorSet()`, `DMGetRegionNumDS()`, `PetscDSGetExactSolution()`, `DMGetOutputSequenceNumber()` 88272e4af2aeSMatthew G. Knepley @*/ 8828d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeError(DM dm, Vec sol, PetscReal errors[], Vec *errorVec) 8829d71ae5a4SJacob Faibussowitsch { 88302e4af2aeSMatthew G. Knepley PetscErrorCode (**exactSol)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *); 88312e4af2aeSMatthew G. Knepley void **ctxs; 88322e4af2aeSMatthew G. Knepley PetscReal time; 88332e4af2aeSMatthew G. Knepley PetscInt Nf, f, Nds, s; 88342e4af2aeSMatthew G. Knepley 88352e4af2aeSMatthew G. Knepley PetscFunctionBegin; 88369566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 88379566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &exactSol, Nf, &ctxs)); 88389566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 88392e4af2aeSMatthew G. Knepley for (s = 0; s < Nds; ++s) { 88402e4af2aeSMatthew G. Knepley PetscDS ds; 88412e4af2aeSMatthew G. Knepley DMLabel label; 88422e4af2aeSMatthew G. Knepley IS fieldIS; 88432e4af2aeSMatthew G. Knepley const PetscInt *fields; 88442e4af2aeSMatthew G. Knepley PetscInt dsNf; 88452e4af2aeSMatthew G. Knepley 88469566063dSJacob Faibussowitsch PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds)); 88479566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 88489566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISGetIndices(fieldIS, &fields)); 88492e4af2aeSMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 88502e4af2aeSMatthew G. Knepley const PetscInt field = fields[f]; 88519566063dSJacob Faibussowitsch PetscCall(PetscDSGetExactSolution(ds, field, &exactSol[field], &ctxs[field])); 88522e4af2aeSMatthew G. Knepley } 88539566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISRestoreIndices(fieldIS, &fields)); 88542e4af2aeSMatthew G. Knepley } 8855ad540459SPierre Jolivet for (f = 0; f < Nf; ++f) PetscCheck(exactSol[f], PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "DS must contain exact solution functions in order to calculate error, missing for field %" PetscInt_FMT, f); 88569566063dSJacob Faibussowitsch PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time)); 88579566063dSJacob Faibussowitsch if (errors) PetscCall(DMComputeL2FieldDiff(dm, time, exactSol, ctxs, sol, errors)); 88582e4af2aeSMatthew G. Knepley if (errorVec) { 88592e4af2aeSMatthew G. Knepley DM edm; 88602e4af2aeSMatthew G. Knepley DMPolytopeType ct; 88612e4af2aeSMatthew G. Knepley PetscBool simplex; 88622e4af2aeSMatthew G. Knepley PetscInt dim, cStart, Nf; 88632e4af2aeSMatthew G. Knepley 88649566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &edm)); 88659566063dSJacob Faibussowitsch PetscCall(DMGetDimension(edm, &dim)); 88669566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 88679566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 88682e4af2aeSMatthew G. Knepley simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE; 88699566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 88702e4af2aeSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 88712e4af2aeSMatthew G. Knepley PetscFE fe, efe; 88722e4af2aeSMatthew G. Knepley PetscQuadrature q; 88732e4af2aeSMatthew G. Knepley const char *name; 88742e4af2aeSMatthew G. Knepley 88759566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe)); 88769566063dSJacob Faibussowitsch PetscCall(PetscFECreateLagrange(PETSC_COMM_SELF, dim, Nf, simplex, 0, PETSC_DETERMINE, &efe)); 88779566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)fe, &name)); 88789566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)efe, name)); 88799566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 88809566063dSJacob Faibussowitsch PetscCall(PetscFESetQuadrature(efe, q)); 88819566063dSJacob Faibussowitsch PetscCall(DMSetField(edm, f, NULL, (PetscObject)efe)); 88829566063dSJacob Faibussowitsch PetscCall(PetscFEDestroy(&efe)); 88832e4af2aeSMatthew G. Knepley } 88849566063dSJacob Faibussowitsch PetscCall(DMCreateDS(edm)); 88852e4af2aeSMatthew G. Knepley 88869566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(edm, errorVec)); 88879566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*errorVec, "Error")); 88889566063dSJacob Faibussowitsch PetscCall(DMPlexComputeL2DiffVec(dm, time, exactSol, ctxs, sol, *errorVec)); 88899566063dSJacob Faibussowitsch PetscCall(DMDestroy(&edm)); 88902e4af2aeSMatthew G. Knepley } 88919566063dSJacob Faibussowitsch PetscCall(PetscFree2(exactSol, ctxs)); 88922e4af2aeSMatthew G. Knepley PetscFunctionReturn(0); 88932e4af2aeSMatthew G. Knepley } 88949a2a23afSMatthew G. Knepley 88959a2a23afSMatthew G. Knepley /*@ 8896bb7acecfSBarry Smith DMGetNumAuxiliaryVec - Get the number of auxiliary vectors associated with this `DM` 88979a2a23afSMatthew G. Knepley 88989a2a23afSMatthew G. Knepley Not collective 88999a2a23afSMatthew G. Knepley 89009a2a23afSMatthew G. Knepley Input Parameter: 8901bb7acecfSBarry Smith . dm - The `DM` 89029a2a23afSMatthew G. Knepley 89039a2a23afSMatthew G. Knepley Output Parameter: 8904a5b23f4aSJose E. Roman . numAux - The number of auxiliary data vectors 89059a2a23afSMatthew G. Knepley 89069a2a23afSMatthew G. Knepley Level: advanced 89079a2a23afSMatthew G. Knepley 8908bb7acecfSBarry Smith .seealso: `DMSetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 89099a2a23afSMatthew G. Knepley @*/ 8910d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumAuxiliaryVec(DM dm, PetscInt *numAux) 8911d71ae5a4SJacob Faibussowitsch { 89129a2a23afSMatthew G. Knepley PetscFunctionBegin; 89139a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 89149566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetSize(dm->auxData, numAux)); 89159a2a23afSMatthew G. Knepley PetscFunctionReturn(0); 89169a2a23afSMatthew G. Knepley } 89179a2a23afSMatthew G. Knepley 89189a2a23afSMatthew G. Knepley /*@ 8919ac17215fSMatthew G. Knepley DMGetAuxiliaryVec - Get the auxiliary vector for region specified by the given label and value, and equation part 89209a2a23afSMatthew G. Knepley 89219a2a23afSMatthew G. Knepley Not collective 89229a2a23afSMatthew G. Knepley 89239a2a23afSMatthew G. Knepley Input Parameters: 8924bb7acecfSBarry Smith + dm - The `DM` 8925bb7acecfSBarry Smith . label - The `DMLabel` 8926ac17215fSMatthew G. Knepley . value - The label value indicating the region 8927ac17215fSMatthew G. Knepley - part - The equation part, or 0 if unused 89289a2a23afSMatthew G. Knepley 89299a2a23afSMatthew G. Knepley Output Parameter: 8930bb7acecfSBarry Smith . aux - The `Vec` holding auxiliary field data 89319a2a23afSMatthew G. Knepley 8932bb7acecfSBarry Smith Note: 8933bb7acecfSBarry Smith If no auxiliary vector is found for this (label, value), (NULL, 0, 0) is checked as well. 893404c51a94SMatthew G. Knepley 89359a2a23afSMatthew G. Knepley Level: advanced 89369a2a23afSMatthew G. Knepley 8937bb7acecfSBarry Smith .seealso: `DMSetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryLabels()` 89389a2a23afSMatthew G. Knepley @*/ 8939d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec *aux) 8940d71ae5a4SJacob Faibussowitsch { 8941ac17215fSMatthew G. Knepley PetscHashAuxKey key, wild = {NULL, 0, 0}; 894204c51a94SMatthew G. Knepley PetscBool has; 89439a2a23afSMatthew G. Knepley 89449a2a23afSMatthew G. Knepley PetscFunctionBegin; 89459a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 89469a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 89479a2a23afSMatthew G. Knepley key.label = label; 89489a2a23afSMatthew G. Knepley key.value = value; 8949ac17215fSMatthew G. Knepley key.part = part; 89509566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxHas(dm->auxData, key, &has)); 89519566063dSJacob Faibussowitsch if (has) PetscCall(PetscHMapAuxGet(dm->auxData, key, aux)); 89529566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxGet(dm->auxData, wild, aux)); 89539a2a23afSMatthew G. Knepley PetscFunctionReturn(0); 89549a2a23afSMatthew G. Knepley } 89559a2a23afSMatthew G. Knepley 89569a2a23afSMatthew G. Knepley /*@ 8957bb7acecfSBarry Smith DMSetAuxiliaryVec - Set an auxiliary vector for region specified by the given label and value, and equation part 89589a2a23afSMatthew G. Knepley 8959bb7acecfSBarry Smith Not collective because auxilary vectors are not parallel 89609a2a23afSMatthew G. Knepley 89619a2a23afSMatthew G. Knepley Input Parameters: 8962bb7acecfSBarry Smith + dm - The `DM` 8963bb7acecfSBarry Smith . label - The `DMLabel` 89649a2a23afSMatthew G. Knepley . value - The label value indicating the region 8965ac17215fSMatthew G. Knepley . part - The equation part, or 0 if unused 8966bb7acecfSBarry Smith - aux - The `Vec` holding auxiliary field data 89679a2a23afSMatthew G. Knepley 89689a2a23afSMatthew G. Knepley Level: advanced 89699a2a23afSMatthew G. Knepley 8970bb7acecfSBarry Smith .seealso: `DMGetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMCopyAuxiliaryVec()` 89719a2a23afSMatthew G. Knepley @*/ 8972d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec aux) 8973d71ae5a4SJacob Faibussowitsch { 89749a2a23afSMatthew G. Knepley Vec old; 89759a2a23afSMatthew G. Knepley PetscHashAuxKey key; 89769a2a23afSMatthew G. Knepley 89779a2a23afSMatthew G. Knepley PetscFunctionBegin; 89789a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 89799a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 89809a2a23afSMatthew G. Knepley key.label = label; 89819a2a23afSMatthew G. Knepley key.value = value; 8982ac17215fSMatthew G. Knepley key.part = part; 89839566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGet(dm->auxData, key, &old)); 89849566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)aux)); 89859566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)old)); 89869566063dSJacob Faibussowitsch if (!aux) PetscCall(PetscHMapAuxDel(dm->auxData, key)); 89879566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxSet(dm->auxData, key, aux)); 89889a2a23afSMatthew G. Knepley PetscFunctionReturn(0); 89899a2a23afSMatthew G. Knepley } 89909a2a23afSMatthew G. Knepley 89919a2a23afSMatthew G. Knepley /*@C 8992bb7acecfSBarry Smith DMGetAuxiliaryLabels - Get the labels, values, and parts for all auxiliary vectors in this `DM` 89939a2a23afSMatthew G. Knepley 89949a2a23afSMatthew G. Knepley Not collective 89959a2a23afSMatthew G. Knepley 89969a2a23afSMatthew G. Knepley Input Parameter: 8997bb7acecfSBarry Smith . dm - The `DM` 89989a2a23afSMatthew G. Knepley 89999a2a23afSMatthew G. Knepley Output Parameters: 9000bb7acecfSBarry Smith + labels - The `DMLabel`s for each `Vec` 9001bb7acecfSBarry Smith . values - The label values for each `Vec` 9002bb7acecfSBarry Smith - parts - The equation parts for each `Vec` 90039a2a23afSMatthew G. Knepley 9004bb7acecfSBarry Smith Note: 9005bb7acecfSBarry Smith The arrays passed in must be at least as large as `DMGetNumAuxiliaryVec()`. 90069a2a23afSMatthew G. Knepley 90079a2a23afSMatthew G. Knepley Level: advanced 90089a2a23afSMatthew G. Knepley 9009bb7acecfSBarry Smith .seealso: `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMSetAuxiliaryVec()`, DMCopyAuxiliaryVec()` 90109a2a23afSMatthew G. Knepley @*/ 9011d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryLabels(DM dm, DMLabel labels[], PetscInt values[], PetscInt parts[]) 9012d71ae5a4SJacob Faibussowitsch { 90139a2a23afSMatthew G. Knepley PetscHashAuxKey *keys; 90149a2a23afSMatthew G. Knepley PetscInt n, i, off = 0; 90159a2a23afSMatthew G. Knepley 90169a2a23afSMatthew G. Knepley PetscFunctionBegin; 90179a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 90189a2a23afSMatthew G. Knepley PetscValidPointer(labels, 2); 9019dadcf809SJacob Faibussowitsch PetscValidIntPointer(values, 3); 9020dadcf809SJacob Faibussowitsch PetscValidIntPointer(parts, 4); 90219566063dSJacob Faibussowitsch PetscCall(DMGetNumAuxiliaryVec(dm, &n)); 90229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &keys)); 90239566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetKeys(dm->auxData, &off, keys)); 90249371c9d4SSatish Balay for (i = 0; i < n; ++i) { 90259371c9d4SSatish Balay labels[i] = keys[i].label; 90269371c9d4SSatish Balay values[i] = keys[i].value; 90279371c9d4SSatish Balay parts[i] = keys[i].part; 90289371c9d4SSatish Balay } 90299566063dSJacob Faibussowitsch PetscCall(PetscFree(keys)); 90309a2a23afSMatthew G. Knepley PetscFunctionReturn(0); 90319a2a23afSMatthew G. Knepley } 90329a2a23afSMatthew G. Knepley 90339a2a23afSMatthew G. Knepley /*@ 9034bb7acecfSBarry Smith DMCopyAuxiliaryVec - Copy the auxiliary vector data on a `DM` to a new `DM` 90359a2a23afSMatthew G. Knepley 90369a2a23afSMatthew G. Knepley Not collective 90379a2a23afSMatthew G. Knepley 90389a2a23afSMatthew G. Knepley Input Parameter: 9039bb7acecfSBarry Smith . dm - The `DM` 90409a2a23afSMatthew G. Knepley 90419a2a23afSMatthew G. Knepley Output Parameter: 9042bb7acecfSBarry Smith . dmNew - The new `DM`, now with the same auxiliary data 90439a2a23afSMatthew G. Knepley 90449a2a23afSMatthew G. Knepley Level: advanced 90459a2a23afSMatthew G. Knepley 9046bb7acecfSBarry Smith Note: 9047bb7acecfSBarry Smith This is a shallow copy of the auxiliary vectors 9048bb7acecfSBarry Smith 9049db781477SPatrick Sanan .seealso: `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 90509a2a23afSMatthew G. Knepley @*/ 9051d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyAuxiliaryVec(DM dm, DM dmNew) 9052d71ae5a4SJacob Faibussowitsch { 90539a2a23afSMatthew G. Knepley PetscFunctionBegin; 90549a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 90559566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDestroy(&dmNew->auxData)); 90569566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDuplicate(dm->auxData, &dmNew->auxData)); 90579a2a23afSMatthew G. Knepley PetscFunctionReturn(0); 90589a2a23afSMatthew G. Knepley } 9059b5a892a1SMatthew G. Knepley 9060b5a892a1SMatthew G. Knepley /*@C 9061bb7acecfSBarry Smith DMPolytopeMatchOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9062b5a892a1SMatthew G. Knepley 9063b5a892a1SMatthew G. Knepley Not collective 9064b5a892a1SMatthew G. Knepley 9065b5a892a1SMatthew G. Knepley Input Parameters: 9066bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9067b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9068b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9069b5a892a1SMatthew G. Knepley 9070b5a892a1SMatthew G. Knepley Output Parameters: 9071bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9072b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9073b5a892a1SMatthew G. Knepley 9074b5a892a1SMatthew G. Knepley Level: advanced 9075b5a892a1SMatthew G. Knepley 9076bb7acecfSBarry Smith Note: 9077bb7acecfSBarry Smith An arrangement is a face order combined with an orientation for each face 9078bb7acecfSBarry Smith 9079bb7acecfSBarry Smith Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangments(ct)`/2 to `DMPolytopeTypeGetNumArrangments(ct)`/2 9080bb7acecfSBarry Smith that labels each arrangement (face ordering plus orientation for each face). 9081bb7acecfSBarry Smith 9082bb7acecfSBarry Smith See `DMPolytopeMatchVertexOrientation()` to find a new vertex orientation that takes the source vertex arrangement to the target vertex arrangement 9083bb7acecfSBarry Smith 9084bb7acecfSBarry Smith .seealso: `DMPolytopeGetOrientation()`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetVertexOrientation()` 9085b5a892a1SMatthew G. Knepley @*/ 9086d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt, PetscBool *found) 9087d71ae5a4SJacob Faibussowitsch { 9088b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetConeSize(ct); 9089b5a892a1SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangments(ct) / 2; 9090b5a892a1SMatthew G. Knepley PetscInt o, c; 9091b5a892a1SMatthew G. Knepley 9092b5a892a1SMatthew G. Knepley PetscFunctionBegin; 90939371c9d4SSatish Balay if (!nO) { 90949371c9d4SSatish Balay *ornt = 0; 90959371c9d4SSatish Balay *found = PETSC_TRUE; 90969371c9d4SSatish Balay PetscFunctionReturn(0); 90979371c9d4SSatish Balay } 9098b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 9099b5a892a1SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangment(ct, o); 9100b5a892a1SMatthew G. Knepley 91019371c9d4SSatish Balay for (c = 0; c < cS; ++c) 91029371c9d4SSatish Balay if (sourceCone[arr[c * 2]] != targetCone[c]) break; 91039371c9d4SSatish Balay if (c == cS) { 91049371c9d4SSatish Balay *ornt = o; 91059371c9d4SSatish Balay break; 91069371c9d4SSatish Balay } 9107b5a892a1SMatthew G. Knepley } 9108b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 9109b5a892a1SMatthew G. Knepley PetscFunctionReturn(0); 9110b5a892a1SMatthew G. Knepley } 9111b5a892a1SMatthew G. Knepley 9112b5a892a1SMatthew G. Knepley /*@C 9113bb7acecfSBarry Smith DMPolytopeGetOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9114b5a892a1SMatthew G. Knepley 9115b5a892a1SMatthew G. Knepley Not collective 9116b5a892a1SMatthew G. Knepley 9117b5a892a1SMatthew G. Knepley Input Parameters: 9118bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9119b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9120b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9121b5a892a1SMatthew G. Knepley 9122b5a892a1SMatthew G. Knepley Output Parameters: 9123bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9124b5a892a1SMatthew G. Knepley 9125b5a892a1SMatthew G. Knepley Level: advanced 9126b5a892a1SMatthew G. Knepley 9127bb7acecfSBarry Smith Note: 9128bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchOrientation()` except it will generate an error if no suitable orientation can be found. 9129bb7acecfSBarry Smith 9130bb7acecfSBarry Smith Developer Note: 9131bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchOrientation()` and error if none is found 9132bb7acecfSBarry Smith 9133bb7acecfSBarry Smith .seealso: `DMPolytopeType`, `DMPolytopeMatchOrientation()`, `DMPolytopeGetVertexOrientation()`, `DMPolytopeMatchVertexOrientation()` 9134b5a892a1SMatthew G. Knepley @*/ 9135d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9136d71ae5a4SJacob Faibussowitsch { 9137b5a892a1SMatthew G. Knepley PetscBool found; 9138b5a892a1SMatthew G. Knepley 9139b5a892a1SMatthew G. Knepley PetscFunctionBegin; 91409566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchOrientation(ct, sourceCone, targetCone, ornt, &found)); 91417a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 9142b5a892a1SMatthew G. Knepley PetscFunctionReturn(0); 9143b5a892a1SMatthew G. Knepley } 9144b5a892a1SMatthew G. Knepley 9145b5a892a1SMatthew G. Knepley /*@C 9146bb7acecfSBarry Smith DMPolytopeMatchVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9147b5a892a1SMatthew G. Knepley 9148b5a892a1SMatthew G. Knepley Not collective 9149b5a892a1SMatthew G. Knepley 9150b5a892a1SMatthew G. Knepley Input Parameters: 9151bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9152b5a892a1SMatthew G. Knepley . sourceVert - The source arrangement of vertices 9153b5a892a1SMatthew G. Knepley - targetVert - The target arrangement of vertices 9154b5a892a1SMatthew G. Knepley 9155b5a892a1SMatthew G. Knepley Output Parameters: 9156bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9157b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9158b5a892a1SMatthew G. Knepley 9159b5a892a1SMatthew G. Knepley Level: advanced 9160b5a892a1SMatthew G. Knepley 9161bb7acecfSBarry Smith Note: 9162bb7acecfSBarry Smith An arrangement is a vertex order 9163bb7acecfSBarry Smith 9164bb7acecfSBarry Smith Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangments(ct)`/2 to `DMPolytopeTypeGetNumArrangments(ct)`/2 9165bb7acecfSBarry Smith that labels each arrangement (vertex ordering). 9166bb7acecfSBarry Smith 9167bb7acecfSBarry Smith See `DMPolytopeMatchOrientation()` to find a new face orientation that takes the source face arrangement to the target face arrangement 9168bb7acecfSBarry Smith 9169bb7acecfSBarry Smith .seealso: `DMPolytopeType`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchOrientation()`, `DMPolytopeTypeGetNumVertices()`, `DMPolytopeTypeGetVertexArrangment()` 9170b5a892a1SMatthew G. Knepley @*/ 9171d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchVertexOrientation(DMPolytopeType ct, const PetscInt sourceVert[], const PetscInt targetVert[], PetscInt *ornt, PetscBool *found) 9172d71ae5a4SJacob Faibussowitsch { 9173b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetNumVertices(ct); 9174b5a892a1SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangments(ct) / 2; 9175b5a892a1SMatthew G. Knepley PetscInt o, c; 9176b5a892a1SMatthew G. Knepley 9177b5a892a1SMatthew G. Knepley PetscFunctionBegin; 91789371c9d4SSatish Balay if (!nO) { 91799371c9d4SSatish Balay *ornt = 0; 91809371c9d4SSatish Balay *found = PETSC_TRUE; 91819371c9d4SSatish Balay PetscFunctionReturn(0); 91829371c9d4SSatish Balay } 9183b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 9184b5a892a1SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetVertexArrangment(ct, o); 9185b5a892a1SMatthew G. Knepley 91869371c9d4SSatish Balay for (c = 0; c < cS; ++c) 91879371c9d4SSatish Balay if (sourceVert[arr[c]] != targetVert[c]) break; 91889371c9d4SSatish Balay if (c == cS) { 91899371c9d4SSatish Balay *ornt = o; 91909371c9d4SSatish Balay break; 91919371c9d4SSatish Balay } 9192b5a892a1SMatthew G. Knepley } 9193b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 9194b5a892a1SMatthew G. Knepley PetscFunctionReturn(0); 9195b5a892a1SMatthew G. Knepley } 9196b5a892a1SMatthew G. Knepley 9197b5a892a1SMatthew G. Knepley /*@C 9198bb7acecfSBarry Smith DMPolytopeGetVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9199b5a892a1SMatthew G. Knepley 9200b5a892a1SMatthew G. Knepley Not collective 9201b5a892a1SMatthew G. Knepley 9202b5a892a1SMatthew G. Knepley Input Parameters: 9203bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9204b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of vertices 9205b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of vertices 9206b5a892a1SMatthew G. Knepley 9207b5a892a1SMatthew G. Knepley Output Parameters: 9208bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9209b5a892a1SMatthew G. Knepley 9210b5a892a1SMatthew G. Knepley Level: advanced 9211b5a892a1SMatthew G. Knepley 9212bb7acecfSBarry Smith Note: 9213bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchVertexOrientation()` except it errors if not orientation is possible. 9214bb7acecfSBarry Smith 9215bb7acecfSBarry Smith Developer Note: 9216bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchVertexOrientation()` and error if none is found 9217bb7acecfSBarry Smith 9218bb7acecfSBarry Smith .seealso: `DMPolytopeType`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetOrientation()` 9219b5a892a1SMatthew G. Knepley @*/ 9220d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetVertexOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9221d71ae5a4SJacob Faibussowitsch { 9222b5a892a1SMatthew G. Knepley PetscBool found; 9223b5a892a1SMatthew G. Knepley 9224b5a892a1SMatthew G. Knepley PetscFunctionBegin; 92259566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchVertexOrientation(ct, sourceCone, targetCone, ornt, &found)); 92267a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 9227b5a892a1SMatthew G. Knepley PetscFunctionReturn(0); 9228b5a892a1SMatthew G. Knepley } 9229012bc364SMatthew G. Knepley 9230012bc364SMatthew G. Knepley /*@C 9231012bc364SMatthew G. Knepley DMPolytopeInCellTest - Check whether a point lies inside the reference cell of given type 9232012bc364SMatthew G. Knepley 9233012bc364SMatthew G. Knepley Not collective 9234012bc364SMatthew G. Knepley 9235012bc364SMatthew G. Knepley Input Parameters: 9236bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9237012bc364SMatthew G. Knepley - point - Coordinates of the point 9238012bc364SMatthew G. Knepley 9239012bc364SMatthew G. Knepley Output Parameters: 9240012bc364SMatthew G. Knepley . inside - Flag indicating whether the point is inside the reference cell of given type 9241012bc364SMatthew G. Knepley 9242012bc364SMatthew G. Knepley Level: advanced 9243012bc364SMatthew G. Knepley 9244bb7acecfSBarry Smith .seealso: `DM`, `DMPolytopeType`, `DMLocatePoints()` 9245012bc364SMatthew G. Knepley @*/ 9246d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeInCellTest(DMPolytopeType ct, const PetscReal point[], PetscBool *inside) 9247d71ae5a4SJacob Faibussowitsch { 9248012bc364SMatthew G. Knepley PetscReal sum = 0.0; 9249012bc364SMatthew G. Knepley PetscInt d; 9250012bc364SMatthew G. Knepley 9251012bc364SMatthew G. Knepley PetscFunctionBegin; 9252012bc364SMatthew G. Knepley *inside = PETSC_TRUE; 9253012bc364SMatthew G. Knepley switch (ct) { 9254012bc364SMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 9255012bc364SMatthew G. Knepley case DM_POLYTOPE_TETRAHEDRON: 9256012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) { 92579371c9d4SSatish Balay if (point[d] < -1.0) { 92589371c9d4SSatish Balay *inside = PETSC_FALSE; 92599371c9d4SSatish Balay break; 92609371c9d4SSatish Balay } 9261012bc364SMatthew G. Knepley sum += point[d]; 9262012bc364SMatthew G. Knepley } 92639371c9d4SSatish Balay if (sum > PETSC_SMALL) { 92649371c9d4SSatish Balay *inside = PETSC_FALSE; 92659371c9d4SSatish Balay break; 92669371c9d4SSatish Balay } 9267012bc364SMatthew G. Knepley break; 9268012bc364SMatthew G. Knepley case DM_POLYTOPE_QUADRILATERAL: 9269012bc364SMatthew G. Knepley case DM_POLYTOPE_HEXAHEDRON: 9270012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) 92719371c9d4SSatish Balay if (PetscAbsReal(point[d]) > 1. + PETSC_SMALL) { 92729371c9d4SSatish Balay *inside = PETSC_FALSE; 9273012bc364SMatthew G. Knepley break; 92749371c9d4SSatish Balay } 92759371c9d4SSatish Balay break; 9276d71ae5a4SJacob Faibussowitsch default: 9277d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported polytope type %s", DMPolytopeTypes[ct]); 9278012bc364SMatthew G. Knepley } 9279012bc364SMatthew G. Knepley PetscFunctionReturn(0); 9280012bc364SMatthew G. Knepley } 9281