1d0295fc0SJunchao Zhang #include <petscvec.h> 2af0996ceSBarry Smith #include <petsc/private/dmimpl.h> /*I "petscdm.h" I*/ 3c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 4e6f8dbb6SToby Isaac #include <petsc/private/petscdsimpl.h> /*I "petscds.h" I*/ 53e922f36SToby Isaac #include <petscdmplex.h> 6d2b2dc1eSMatthew G. Knepley #include <petscdmceed.h> 7f19dbd58SToby Isaac #include <petscdmfield.h> 80c312b8eSJed Brown #include <petscsf.h> 92764a2aaSMatthew G. Knepley #include <petscds.h> 1047c6ae99SBarry Smith 11f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 12f918ec44SMatthew G. Knepley #include <petscfeceed.h> 13f918ec44SMatthew G. Knepley #endif 14f918ec44SMatthew G. Knepley 15cea3dcb8SSatish Balay #if !defined(PETSC_HAVE_WINDOWS_COMPILERS) 16cea3dcb8SSatish Balay #include <petsc/private/valgrind/memcheck.h> 1700d952a4SJed Brown #endif 1800d952a4SJed Brown 19732e2eb9SMatthew G Knepley PetscClassId DM_CLASSID; 20d67d17b1SMatthew G. Knepley PetscClassId DMLABEL_CLASSID; 21708be2fdSJed Brown PetscLogEvent DM_Convert, DM_GlobalToLocal, DM_LocalToGlobal, DM_LocalToLocal, DM_LocatePoints, DM_Coarsen, DM_Refine, DM_CreateInterpolation, DM_CreateRestriction, DM_CreateInjection, DM_CreateMatrix, DM_CreateMassMatrix, DM_Load, DM_AdaptInterpolator, DM_ProjectFunction; 2267a56275SMatthew G Knepley 23ea78f98cSLisandro Dalcin const char *const DMBoundaryTypes[] = {"NONE", "GHOSTED", "MIRROR", "PERIODIC", "TWIST", "DMBoundaryType", "DM_BOUNDARY_", NULL}; 24d1b3049bSMatthew G. Knepley const char *const DMBoundaryConditionTypes[] = {"INVALID", "ESSENTIAL", "NATURAL", "INVALID", "INVALID", "ESSENTIAL_FIELD", "NATURAL_FIELD", "INVALID", "INVALID", "ESSENTIAL_BD_FIELD", "NATURAL_RIEMANN", "DMBoundaryConditionType", "DM_BC_", NULL}; 250e762ea3SJed Brown const char *const DMBlockingTypes[] = {"TOPOLOGICAL_POINT", "FIELD_NODE", "DMBlockingType", "DM_BLOCKING_", NULL}; 26476787b7SMatthew G. Knepley const char *const DMPolytopeTypes[] = 27476787b7SMatthew G. Knepley {"vertex", "segment", "tensor_segment", "triangle", "quadrilateral", "tensor_quad", "tetrahedron", "hexahedron", "triangular_prism", "tensor_triangular_prism", "tensor_quadrilateral_prism", "pyramid", "FV_ghost_cell", "interior_ghost_cell", 28476787b7SMatthew G. Knepley "unknown", "unknown_cell", "unknown_face", "invalid", "DMPolytopeType", "DM_POLYTOPE_", NULL}; 292cbb9b06SVaclav Hapla const char *const DMCopyLabelsModes[] = {"replace", "keep", "fail", "DMCopyLabelsMode", "DM_COPY_LABELS_", NULL}; 3060c22052SBarry Smith 31a4121054SBarry Smith /*@ 32bb7acecfSBarry Smith DMCreate - Creates an empty `DM` object. `DM`s are the abstract objects in PETSc that mediate between meshes and discretizations and the 33bb7acecfSBarry Smith algebraic solvers, time integrators, and optimization algorithms. 34a4121054SBarry Smith 35d083f849SBarry Smith Collective 36a4121054SBarry Smith 37a4121054SBarry Smith Input Parameter: 38bb7acecfSBarry Smith . comm - The communicator for the `DM` object 39a4121054SBarry Smith 40a4121054SBarry Smith Output Parameter: 41bb7acecfSBarry Smith . dm - The `DM` object 42a4121054SBarry Smith 43a4121054SBarry Smith Level: beginner 44a4121054SBarry Smith 45bb7acecfSBarry Smith Notes: 46bb7acecfSBarry Smith See `DMType` for a brief summary of available `DM`. 47bb7acecfSBarry Smith 48bb7acecfSBarry Smith The type must then be set with `DMSetType()`. If you never call `DMSetType()` it will generate an 49bb7acecfSBarry Smith error when you try to use the dm. 50bb7acecfSBarry Smith 511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMType`, `DMDACreate()`, `DMDA`, `DMSLICED`, `DMCOMPOSITE`, `DMPLEX`, `DMMOAB`, `DMNETWORK` 52a4121054SBarry Smith @*/ 53d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreate(MPI_Comm comm, DM *dm) 54d71ae5a4SJacob Faibussowitsch { 55a4121054SBarry Smith DM v; 56e5e52638SMatthew G. Knepley PetscDS ds; 57a4121054SBarry Smith 58a4121054SBarry Smith PetscFunctionBegin; 594f572ea9SToby Isaac PetscAssertPointer(dm, 2); 600298fd71SBarry Smith *dm = NULL; 619566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 62a4121054SBarry Smith 639566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(v, DM_CLASSID, "DM", "Distribution Manager", "DM", comm, DMDestroy, DMView)); 64e7c4fc90SDmitry Karpeev 6562e5d2d2SJDBetteridge ((PetscObject)v)->non_cyclic_references = &DMCountNonCyclicReferences; 6662e5d2d2SJDBetteridge 6749be4549SMatthew G. Knepley v->setupcalled = PETSC_FALSE; 6849be4549SMatthew G. Knepley v->setfromoptionscalled = PETSC_FALSE; 690298fd71SBarry Smith v->ltogmap = NULL; 70a4ea9b21SRichard Tran Mills v->bind_below = 0; 711411c6eeSJed Brown v->bs = 1; 72171400e9SBarry Smith v->coloringtype = IS_COLORING_GLOBAL; 739566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sf)); 749566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sectionSF)); 75c58f1c22SToby Isaac v->labels = NULL; 7634aa8a36SMatthew G. Knepley v->adjacency[0] = PETSC_FALSE; 7734aa8a36SMatthew G. Knepley v->adjacency[1] = PETSC_TRUE; 78c58f1c22SToby Isaac v->depthLabel = NULL; 79ba2698f1SMatthew G. Knepley v->celltypeLabel = NULL; 801bb6d2a8SBarry Smith v->localSection = NULL; 811bb6d2a8SBarry Smith v->globalSection = NULL; 823b8ba7d1SJed Brown v->defaultConstraint.section = NULL; 833b8ba7d1SJed Brown v->defaultConstraint.mat = NULL; 8479769bd5SJed Brown v->defaultConstraint.bias = NULL; 856858538eSMatthew G. Knepley v->coordinates[0].dim = PETSC_DEFAULT; 866858538eSMatthew G. Knepley v->coordinates[1].dim = PETSC_DEFAULT; 876858538eSMatthew G. Knepley v->sparseLocalize = PETSC_TRUE; 8896173672SStefano Zampini v->dim = PETSC_DETERMINE; 89435a35e8SMatthew G Knepley { 90435a35e8SMatthew G Knepley PetscInt i; 91435a35e8SMatthew G Knepley for (i = 0; i < 10; ++i) { 920298fd71SBarry Smith v->nullspaceConstructors[i] = NULL; 93f9d4088aSMatthew G. Knepley v->nearnullspaceConstructors[i] = NULL; 94435a35e8SMatthew G Knepley } 95435a35e8SMatthew G Knepley } 969566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 9707218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(v, NULL, NULL, ds, NULL)); 989566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 999566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxCreate(&v->auxData)); 10014f150ffSMatthew G. Knepley v->dmBC = NULL; 101a8fb8f29SToby Isaac v->coarseMesh = NULL; 102f4d763aaSMatthew G. Knepley v->outputSequenceNum = -1; 103cdb7a50dSMatthew G. Knepley v->outputSequenceVal = 0.0; 1049566063dSJacob Faibussowitsch PetscCall(DMSetVecType(v, VECSTANDARD)); 1059566063dSJacob Faibussowitsch PetscCall(DMSetMatType(v, MATAIJ)); 1064a7a4c06SLawrence Mitchell 1071411c6eeSJed Brown *dm = v; 1083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 109a4121054SBarry Smith } 110a4121054SBarry Smith 11138221697SMatthew G. Knepley /*@ 112bb7acecfSBarry Smith DMClone - Creates a `DM` object with the same topology as the original. 11338221697SMatthew G. Knepley 114d083f849SBarry Smith Collective 11538221697SMatthew G. Knepley 11638221697SMatthew G. Knepley Input Parameter: 117bb7acecfSBarry Smith . dm - The original `DM` object 11838221697SMatthew G. Knepley 11938221697SMatthew G. Knepley Output Parameter: 120bb7acecfSBarry Smith . newdm - The new `DM` object 12138221697SMatthew G. Knepley 12238221697SMatthew G. Knepley Level: beginner 12338221697SMatthew G. Knepley 1241cb8cacdSPatrick Sanan Notes: 125bb7acecfSBarry Smith For some `DM` implementations this is a shallow clone, the result of which may share (reference counted) information with its parent. For example, 126bb7acecfSBarry Smith `DMClone()` applied to a `DMPLEX` object will result in a new `DMPLEX` that shares the topology with the original `DMPLEX`. It does not 127bb7acecfSBarry Smith share the `PetscSection` of the original `DM`. 1281bb6d2a8SBarry Smith 129bb7acecfSBarry Smith The clone is considered set up if the original has been set up. 13089706ed2SPatrick Sanan 131bb7acecfSBarry Smith Use `DMConvert()` for a general way to create new `DM` from a given `DM` 132bb7acecfSBarry Smith 13360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMSetType()`, `DMSetLocalSection()`, `DMSetGlobalSection()`, `DMPLEX`, `DMConvert()` 13438221697SMatthew G. Knepley @*/ 135d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClone(DM dm, DM *newdm) 136d71ae5a4SJacob Faibussowitsch { 13738221697SMatthew G. Knepley PetscSF sf; 13838221697SMatthew G. Knepley Vec coords; 13938221697SMatthew G. Knepley void *ctx; 140ec196627SMatthew G. Knepley MatOrderingType otype; 141ec196627SMatthew G. Knepley DMReorderDefaultFlag flg; 1426858538eSMatthew G. Knepley PetscInt dim, cdim, i; 14338221697SMatthew G. Knepley 14438221697SMatthew G. Knepley PetscFunctionBegin; 14538221697SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1464f572ea9SToby Isaac PetscAssertPointer(newdm, 2); 1479566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), newdm)); 1489566063dSJacob Faibussowitsch PetscCall(DMCopyLabels(dm, *newdm, PETSC_COPY_VALUES, PETSC_TRUE, DM_COPY_LABELS_FAIL)); 149ddf8437dSMatthew G. Knepley (*newdm)->leveldown = dm->leveldown; 150ddf8437dSMatthew G. Knepley (*newdm)->levelup = dm->levelup; 151c8a6034eSMark (*newdm)->prealloc_only = dm->prealloc_only; 152fc214432SJed Brown (*newdm)->prealloc_skip = dm->prealloc_skip; 1539566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->vectype)); 1549566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*newdm)->vectype)); 1559566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->mattype)); 1569566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*newdm)->mattype)); 1579566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 1589566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*newdm, dim)); 159dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, clone, newdm); 1603f22bcbcSToby Isaac (*newdm)->setupcalled = dm->setupcalled; 1619566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 1629566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*newdm, sf)); 1639566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dm, &ctx)); 1649566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(*newdm, ctx)); 165ec196627SMatthew G. Knepley PetscCall(DMReorderSectionGetDefault(dm, &flg)); 166ec196627SMatthew G. Knepley PetscCall(DMReorderSectionSetDefault(*newdm, flg)); 167ec196627SMatthew G. Knepley PetscCall(DMReorderSectionGetType(dm, &otype)); 168ec196627SMatthew G. Knepley PetscCall(DMReorderSectionSetType(*newdm, otype)); 1696858538eSMatthew G. Knepley for (i = 0; i < 2; ++i) { 1706858538eSMatthew G. Knepley if (dm->coordinates[i].dm) { 171be4c1c3eSMatthew G. Knepley DM ncdm; 172be4c1c3eSMatthew G. Knepley PetscSection cs; 1735a0206caSToby Isaac PetscInt pEnd = -1, pEndMax = -1; 174be4c1c3eSMatthew G. Knepley 1756858538eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm->coordinates[i].dm, &cs)); 1769566063dSJacob Faibussowitsch if (cs) PetscCall(PetscSectionGetChart(cs, NULL, &pEnd)); 177712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(&pEnd, &pEndMax, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 1785a0206caSToby Isaac if (pEndMax >= 0) { 1796858538eSMatthew G. Knepley PetscCall(DMClone(dm->coordinates[i].dm, &ncdm)); 1806858538eSMatthew G. Knepley PetscCall(DMCopyDisc(dm->coordinates[i].dm, ncdm)); 1819566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(ncdm, cs)); 1826858538eSMatthew G. Knepley if (i) PetscCall(DMSetCellCoordinateDM(*newdm, ncdm)); 1836858538eSMatthew G. Knepley else PetscCall(DMSetCoordinateDM(*newdm, ncdm)); 1849566063dSJacob Faibussowitsch PetscCall(DMDestroy(&ncdm)); 185be4c1c3eSMatthew G. Knepley } 186be4c1c3eSMatthew G. Knepley } 1876858538eSMatthew G. Knepley } 1889566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 1899566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*newdm, cdim)); 1909566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coords)); 19138221697SMatthew G. Knepley if (coords) { 1929566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(*newdm, coords)); 19338221697SMatthew G. Knepley } else { 1949566063dSJacob Faibussowitsch PetscCall(DMGetCoordinates(dm, &coords)); 1959566063dSJacob Faibussowitsch if (coords) PetscCall(DMSetCoordinates(*newdm, coords)); 19638221697SMatthew G. Knepley } 1976858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinatesLocal(dm, &coords)); 1986858538eSMatthew G. Knepley if (coords) { 1996858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinatesLocal(*newdm, coords)); 2006858538eSMatthew G. Knepley } else { 2016858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinates(dm, &coords)); 2026858538eSMatthew G. Knepley if (coords) PetscCall(DMSetCellCoordinates(*newdm, coords)); 2036858538eSMatthew G. Knepley } 20490b157c4SStefano Zampini { 2054fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 2066858538eSMatthew G. Knepley 2074fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 2084fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*newdm, maxCell, Lstart, L)); 209c6b900c6SMatthew G. Knepley } 21034aa8a36SMatthew G. Knepley { 21134aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 21234aa8a36SMatthew G. Knepley 2139566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, &useCone, &useClosure)); 2149566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(*newdm, PETSC_DEFAULT, useCone, useClosure)); 21534aa8a36SMatthew G. Knepley } 2163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21738221697SMatthew G. Knepley } 21838221697SMatthew G. Knepley 2199a42bb27SBarry Smith /*@C 220bb7acecfSBarry Smith DMSetVecType - Sets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 2219a42bb27SBarry Smith 22220f4b53cSBarry Smith Logically Collective 2239a42bb27SBarry Smith 224147403d9SBarry Smith Input Parameters: 22532546409SMatthew G. Knepley + dm - initial distributed array 226bb7acecfSBarry Smith - ctype - the vector type, for example `VECSTANDARD`, `VECCUDA`, or `VECVIENNACL` 2279a42bb27SBarry Smith 22820f4b53cSBarry Smith Options Database Key: 229147403d9SBarry Smith . -dm_vec_type ctype - the type of vector to create 2309a42bb27SBarry Smith 2319a42bb27SBarry Smith Level: intermediate 2329a42bb27SBarry Smith 23360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMGetVecType()`, `DMSetMatType()`, `DMGetMatType()`, 234bb7acecfSBarry Smith `VECSTANDARD`, `VECCUDA`, `VECVIENNACL`, `DMCreateLocalVector()`, `DMCreateGlobalVector()` 2359a42bb27SBarry Smith @*/ 23632546409SMatthew G. Knepley PetscErrorCode DMSetVecType(DM dm, VecType ctype) 237d71ae5a4SJacob Faibussowitsch { 23832546409SMatthew G. Knepley char *tmp; 23932546409SMatthew G. Knepley 2409a42bb27SBarry Smith PetscFunctionBegin; 24132546409SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 24232546409SMatthew G. Knepley PetscAssertPointer(ctype, 2); 24332546409SMatthew G. Knepley tmp = (char *)dm->vectype; 24432546409SMatthew G. Knepley PetscCall(PetscStrallocpy(ctype, (char **)&dm->vectype)); 24532546409SMatthew G. Knepley PetscCall(PetscFree(tmp)); 2463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2479a42bb27SBarry Smith } 2489a42bb27SBarry Smith 249c0dedaeaSBarry Smith /*@C 250bb7acecfSBarry Smith DMGetVecType - Gets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 251c0dedaeaSBarry Smith 25220f4b53cSBarry Smith Logically Collective 253c0dedaeaSBarry Smith 254c0dedaeaSBarry Smith Input Parameter: 255c0dedaeaSBarry Smith . da - initial distributed array 256c0dedaeaSBarry Smith 257c0dedaeaSBarry Smith Output Parameter: 258c0dedaeaSBarry Smith . ctype - the vector type 259c0dedaeaSBarry Smith 260c0dedaeaSBarry Smith Level: intermediate 261c0dedaeaSBarry Smith 26260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMSetMatType()`, `DMGetMatType()`, `DMSetVecType()` 263c0dedaeaSBarry Smith @*/ 264d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetVecType(DM da, VecType *ctype) 265d71ae5a4SJacob Faibussowitsch { 266c0dedaeaSBarry Smith PetscFunctionBegin; 267c0dedaeaSBarry Smith PetscValidHeaderSpecific(da, DM_CLASSID, 1); 268c0dedaeaSBarry Smith *ctype = da->vectype; 2693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 270c0dedaeaSBarry Smith } 271c0dedaeaSBarry Smith 2725f1ad066SMatthew G Knepley /*@ 273bb7acecfSBarry Smith VecGetDM - Gets the `DM` defining the data layout of the vector 2745f1ad066SMatthew G Knepley 27520f4b53cSBarry Smith Not Collective 2765f1ad066SMatthew G Knepley 2775f1ad066SMatthew G Knepley Input Parameter: 278bb7acecfSBarry Smith . v - The `Vec` 2795f1ad066SMatthew G Knepley 2805f1ad066SMatthew G Knepley Output Parameter: 281bb7acecfSBarry Smith . dm - The `DM` 2825f1ad066SMatthew G Knepley 2835f1ad066SMatthew G Knepley Level: intermediate 2845f1ad066SMatthew G Knepley 285bb7acecfSBarry Smith Note: 286bb7acecfSBarry Smith A `Vec` may not have a `DM` associated with it. 287bb7acecfSBarry Smith 2881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecSetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 2895f1ad066SMatthew G Knepley @*/ 290d71ae5a4SJacob Faibussowitsch PetscErrorCode VecGetDM(Vec v, DM *dm) 291d71ae5a4SJacob Faibussowitsch { 2925f1ad066SMatthew G Knepley PetscFunctionBegin; 2935f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 2944f572ea9SToby Isaac PetscAssertPointer(dm, 2); 2959566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)v, "__PETSc_dm", (PetscObject *)dm)); 2963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2975f1ad066SMatthew G Knepley } 2985f1ad066SMatthew G Knepley 2995f1ad066SMatthew G Knepley /*@ 300bb7acecfSBarry Smith VecSetDM - Sets the `DM` defining the data layout of the vector. 3015f1ad066SMatthew G Knepley 30220f4b53cSBarry Smith Not Collective 3035f1ad066SMatthew G Knepley 3045f1ad066SMatthew G Knepley Input Parameters: 305bb7acecfSBarry Smith + v - The `Vec` 306bb7acecfSBarry Smith - dm - The `DM` 3075f1ad066SMatthew G Knepley 30820f4b53cSBarry Smith Level: developer 30920f4b53cSBarry Smith 310bb7acecfSBarry Smith Note: 311bb7acecfSBarry Smith This is rarely used, generally one uses `DMGetLocalVector()` or `DMGetGlobalVector()` to create a vector associated with a given `DM` 312d9805387SMatthew G. Knepley 313bb7acecfSBarry Smith This is NOT the same as `DMCreateGlobalVector()` since it does not change the view methods or perform other customization, but merely sets the `DM` member. 314bb7acecfSBarry Smith 3151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecGetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 3165f1ad066SMatthew G Knepley @*/ 317d71ae5a4SJacob Faibussowitsch PetscErrorCode VecSetDM(Vec v, DM dm) 318d71ae5a4SJacob Faibussowitsch { 3195f1ad066SMatthew G Knepley PetscFunctionBegin; 3205f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 321d7f50e27SLisandro Dalcin if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 3229566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)v, "__PETSc_dm", (PetscObject)dm)); 3233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3245f1ad066SMatthew G Knepley } 3255f1ad066SMatthew G Knepley 326521d9a4cSLisandro Dalcin /*@C 327bb7acecfSBarry Smith DMSetISColoringType - Sets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 3288f1509bcSBarry Smith 32920f4b53cSBarry Smith Logically Collective 3308f1509bcSBarry Smith 3318f1509bcSBarry Smith Input Parameters: 332bb7acecfSBarry Smith + dm - the `DM` context 3338f1509bcSBarry Smith - ctype - the matrix type 3348f1509bcSBarry Smith 33520f4b53cSBarry Smith Options Database Key: 3368f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3378f1509bcSBarry Smith 3388f1509bcSBarry Smith Level: intermediate 3398f1509bcSBarry Smith 3401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 341bb7acecfSBarry Smith `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3428f1509bcSBarry Smith @*/ 343d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetISColoringType(DM dm, ISColoringType ctype) 344d71ae5a4SJacob Faibussowitsch { 3458f1509bcSBarry Smith PetscFunctionBegin; 3468f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3478f1509bcSBarry Smith dm->coloringtype = ctype; 3483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3498f1509bcSBarry Smith } 3508f1509bcSBarry Smith 3518f1509bcSBarry Smith /*@C 352bb7acecfSBarry Smith DMGetISColoringType - Gets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 353521d9a4cSLisandro Dalcin 35420f4b53cSBarry Smith Logically Collective 355521d9a4cSLisandro Dalcin 356521d9a4cSLisandro Dalcin Input Parameter: 357bb7acecfSBarry Smith . dm - the `DM` context 3588f1509bcSBarry Smith 3598f1509bcSBarry Smith Output Parameter: 3608f1509bcSBarry Smith . ctype - the matrix type 3618f1509bcSBarry Smith 36220f4b53cSBarry Smith Options Database Key: 3638f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3648f1509bcSBarry Smith 3658f1509bcSBarry Smith Level: intermediate 3668f1509bcSBarry Smith 3671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 36842747ad1SJacob Faibussowitsch `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3698f1509bcSBarry Smith @*/ 370d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetISColoringType(DM dm, ISColoringType *ctype) 371d71ae5a4SJacob Faibussowitsch { 3728f1509bcSBarry Smith PetscFunctionBegin; 3738f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3748f1509bcSBarry Smith *ctype = dm->coloringtype; 3753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3768f1509bcSBarry Smith } 3778f1509bcSBarry Smith 3788f1509bcSBarry Smith /*@C 379bb7acecfSBarry Smith DMSetMatType - Sets the type of matrix created with `DMCreateMatrix()` 3808f1509bcSBarry Smith 38120f4b53cSBarry Smith Logically Collective 3828f1509bcSBarry Smith 3838f1509bcSBarry Smith Input Parameters: 384bb7acecfSBarry Smith + dm - the `DM` context 385bb7acecfSBarry Smith - ctype - the matrix type, for example `MATMPIAIJ` 386521d9a4cSLisandro Dalcin 38720f4b53cSBarry Smith Options Database Key: 388bb7acecfSBarry Smith . -dm_mat_type ctype - the type of the matrix to create, for example mpiaij 389521d9a4cSLisandro Dalcin 390521d9a4cSLisandro Dalcin Level: intermediate 391521d9a4cSLisandro Dalcin 39242747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatType`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMGetMatType()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()` 393521d9a4cSLisandro Dalcin @*/ 394d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatType(DM dm, MatType ctype) 395d71ae5a4SJacob Faibussowitsch { 39632546409SMatthew G. Knepley char *tmp; 39732546409SMatthew G. Knepley 398521d9a4cSLisandro Dalcin PetscFunctionBegin; 399521d9a4cSLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 40032546409SMatthew G. Knepley PetscAssertPointer(ctype, 2); 40132546409SMatthew G. Knepley tmp = (char *)dm->mattype; 4029566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(ctype, (char **)&dm->mattype)); 40332546409SMatthew G. Knepley PetscCall(PetscFree(tmp)); 4043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 405521d9a4cSLisandro Dalcin } 406521d9a4cSLisandro Dalcin 407c0dedaeaSBarry Smith /*@C 40820f4b53cSBarry Smith DMGetMatType - Gets the type of matrix that would be created with `DMCreateMatrix()` 409c0dedaeaSBarry Smith 41020f4b53cSBarry Smith Logically Collective 411c0dedaeaSBarry Smith 412c0dedaeaSBarry Smith Input Parameter: 413bb7acecfSBarry Smith . dm - the `DM` context 414c0dedaeaSBarry Smith 415c0dedaeaSBarry Smith Output Parameter: 416c0dedaeaSBarry Smith . ctype - the matrix type 417c0dedaeaSBarry Smith 418c0dedaeaSBarry Smith Level: intermediate 419c0dedaeaSBarry Smith 42042747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMSetMatType()` 421c0dedaeaSBarry Smith @*/ 422d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetMatType(DM dm, MatType *ctype) 423d71ae5a4SJacob Faibussowitsch { 424c0dedaeaSBarry Smith PetscFunctionBegin; 425c0dedaeaSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 426c0dedaeaSBarry Smith *ctype = dm->mattype; 4273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 428c0dedaeaSBarry Smith } 429c0dedaeaSBarry Smith 430c688c046SMatthew G Knepley /*@ 431bb7acecfSBarry Smith MatGetDM - Gets the `DM` defining the data layout of the matrix 432c688c046SMatthew G Knepley 43320f4b53cSBarry Smith Not Collective 434c688c046SMatthew G Knepley 435c688c046SMatthew G Knepley Input Parameter: 436bb7acecfSBarry Smith . A - The `Mat` 437c688c046SMatthew G Knepley 438c688c046SMatthew G Knepley Output Parameter: 439bb7acecfSBarry Smith . dm - The `DM` 440c688c046SMatthew G Knepley 441c688c046SMatthew G Knepley Level: intermediate 442c688c046SMatthew G Knepley 443bb7acecfSBarry Smith Note: 444bb7acecfSBarry Smith A matrix may not have a `DM` associated with it 445bb7acecfSBarry Smith 44660225df5SJacob Faibussowitsch Developer Notes: 447bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with the `Mat` through a `PetscObjectCompose()` operation 4488f1509bcSBarry Smith 4491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatSetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 450c688c046SMatthew G Knepley @*/ 451d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDM(Mat A, DM *dm) 452d71ae5a4SJacob Faibussowitsch { 453c688c046SMatthew G Knepley PetscFunctionBegin; 454c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4554f572ea9SToby Isaac PetscAssertPointer(dm, 2); 4569566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_dm", (PetscObject *)dm)); 4573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 458c688c046SMatthew G Knepley } 459c688c046SMatthew G Knepley 460c688c046SMatthew G Knepley /*@ 461bb7acecfSBarry Smith MatSetDM - Sets the `DM` defining the data layout of the matrix 462c688c046SMatthew G Knepley 46320f4b53cSBarry Smith Not Collective 464c688c046SMatthew G Knepley 465c688c046SMatthew G Knepley Input Parameters: 46620f4b53cSBarry Smith + A - The `Mat` 46720f4b53cSBarry Smith - dm - The `DM` 468c688c046SMatthew G Knepley 469bb7acecfSBarry Smith Level: developer 470c688c046SMatthew G Knepley 471bb7acecfSBarry Smith Note: 472bb7acecfSBarry Smith This is rarely used in practice, rather `DMCreateMatrix()` is used to create a matrix associated with a particular `DM` 473bb7acecfSBarry Smith 47460225df5SJacob Faibussowitsch Developer Notes: 475bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with 476bb7acecfSBarry Smith the `Mat` through a `PetscObjectCompose()` operation 4778f1509bcSBarry Smith 4781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatGetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 479c688c046SMatthew G Knepley @*/ 480d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetDM(Mat A, DM dm) 481d71ae5a4SJacob Faibussowitsch { 482c688c046SMatthew G Knepley PetscFunctionBegin; 483c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4848865f1eaSKarl Rupp if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 4859566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_dm", (PetscObject)dm)); 4863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 487c688c046SMatthew G Knepley } 488c688c046SMatthew G Knepley 4899a42bb27SBarry Smith /*@C 490bb7acecfSBarry Smith DMSetOptionsPrefix - Sets the prefix prepended to all option names when searching through the options database 4919a42bb27SBarry Smith 49220f4b53cSBarry Smith Logically Collective 4939a42bb27SBarry Smith 494d8d19677SJose E. Roman Input Parameters: 49560225df5SJacob Faibussowitsch + dm - the `DM` context 496bb7acecfSBarry Smith - prefix - the prefix to prepend 4979a42bb27SBarry Smith 49820f4b53cSBarry Smith Level: advanced 49920f4b53cSBarry Smith 50020f4b53cSBarry Smith Note: 5019a42bb27SBarry Smith A hyphen (-) must NOT be given at the beginning of the prefix name. 5029a42bb27SBarry Smith The first character of all runtime options is AUTOMATICALLY the hyphen. 5039a42bb27SBarry Smith 5041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscObjectSetOptionsPrefix()`, `DMSetFromOptions()` 5059a42bb27SBarry Smith @*/ 506d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOptionsPrefix(DM dm, const char prefix[]) 507d71ae5a4SJacob Faibussowitsch { 5089a42bb27SBarry Smith PetscFunctionBegin; 5099a42bb27SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5109566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, prefix)); 5111baa6e33SBarry Smith if (dm->sf) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sf, prefix)); 5121baa6e33SBarry Smith if (dm->sectionSF) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sectionSF, prefix)); 5133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5149a42bb27SBarry Smith } 5159a42bb27SBarry Smith 51631697293SDave May /*@C 517da81f932SPierre Jolivet DMAppendOptionsPrefix - Appends an additional string to an already existing prefix used for searching for 518bb7acecfSBarry Smith `DM` options in the options database. 51931697293SDave May 52020f4b53cSBarry Smith Logically Collective 52131697293SDave May 52231697293SDave May Input Parameters: 523bb7acecfSBarry Smith + dm - the `DM` context 524bb7acecfSBarry Smith - prefix - the string to append to the current prefix 52531697293SDave May 52620f4b53cSBarry Smith Level: advanced 52720f4b53cSBarry Smith 52820f4b53cSBarry Smith Note: 529bb7acecfSBarry Smith If the `DM` does not currently have an options prefix then this value is used alone as the prefix as if `DMSetOptionsPrefix()` had been called. 53031697293SDave May A hyphen (-) must NOT be given at the beginning of the prefix name. 53131697293SDave May The first character of all runtime options is AUTOMATICALLY the hyphen. 53231697293SDave May 5331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMGetOptionsPrefix()`, `PetscObjectAppendOptionsPrefix()`, `DMSetFromOptions()` 53431697293SDave May @*/ 535d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAppendOptionsPrefix(DM dm, const char prefix[]) 536d71ae5a4SJacob Faibussowitsch { 53731697293SDave May PetscFunctionBegin; 53831697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5399566063dSJacob Faibussowitsch PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, prefix)); 5403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 54131697293SDave May } 54231697293SDave May 54331697293SDave May /*@C 54431697293SDave May DMGetOptionsPrefix - Gets the prefix used for searching for all 545bb7acecfSBarry Smith DM options in the options database. 54631697293SDave May 54731697293SDave May Not Collective 54831697293SDave May 5492fe279fdSBarry Smith Input Parameter: 550bb7acecfSBarry Smith . dm - the `DM` context 55131697293SDave May 5522fe279fdSBarry Smith Output Parameter: 55331697293SDave May . prefix - pointer to the prefix string used is returned 55431697293SDave May 55531697293SDave May Level: advanced 55631697293SDave May 55760225df5SJacob Faibussowitsch Fortran Notes: 55820f4b53cSBarry Smith Pass in a string 'prefix' of 55920f4b53cSBarry Smith sufficient length to hold the prefix. 56020f4b53cSBarry Smith 5611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMAppendOptionsPrefix()`, `DMSetFromOptions()` 56231697293SDave May @*/ 563d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOptionsPrefix(DM dm, const char *prefix[]) 564d71ae5a4SJacob Faibussowitsch { 56531697293SDave May PetscFunctionBegin; 56631697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5679566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, prefix)); 5683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56931697293SDave May } 57031697293SDave May 57162e5d2d2SJDBetteridge static PetscErrorCode DMCountNonCyclicReferences_Internal(DM dm, PetscBool recurseCoarse, PetscBool recurseFine, PetscInt *ncrefct) 572d71ae5a4SJacob Faibussowitsch { 5736eb26441SStefano Zampini PetscInt refct = ((PetscObject)dm)->refct; 57488bdff64SToby Isaac 57588bdff64SToby Isaac PetscFunctionBegin; 576aab5bcd8SJed Brown *ncrefct = 0; 57788bdff64SToby Isaac if (dm->coarseMesh && dm->coarseMesh->fineMesh == dm) { 57888bdff64SToby Isaac refct--; 57988bdff64SToby Isaac if (recurseCoarse) { 58088bdff64SToby Isaac PetscInt coarseCount; 58188bdff64SToby Isaac 58262e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->coarseMesh, PETSC_TRUE, PETSC_FALSE, &coarseCount)); 58388bdff64SToby Isaac refct += coarseCount; 58488bdff64SToby Isaac } 58588bdff64SToby Isaac } 58688bdff64SToby Isaac if (dm->fineMesh && dm->fineMesh->coarseMesh == dm) { 58788bdff64SToby Isaac refct--; 58888bdff64SToby Isaac if (recurseFine) { 58988bdff64SToby Isaac PetscInt fineCount; 59088bdff64SToby Isaac 59162e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->fineMesh, PETSC_FALSE, PETSC_TRUE, &fineCount)); 59288bdff64SToby Isaac refct += fineCount; 59388bdff64SToby Isaac } 59488bdff64SToby Isaac } 59588bdff64SToby Isaac *ncrefct = refct; 5963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 59788bdff64SToby Isaac } 59888bdff64SToby Isaac 59962e5d2d2SJDBetteridge /* Generic wrapper for DMCountNonCyclicReferences_Internal() */ 60062e5d2d2SJDBetteridge PetscErrorCode DMCountNonCyclicReferences(PetscObject dm, PetscInt *ncrefct) 60162e5d2d2SJDBetteridge { 60262e5d2d2SJDBetteridge PetscFunctionBegin; 60362e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal((DM)dm, PETSC_TRUE, PETSC_TRUE, ncrefct)); 6043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 60562e5d2d2SJDBetteridge } 60662e5d2d2SJDBetteridge 607d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyLabelLinkList_Internal(DM dm) 608d71ae5a4SJacob Faibussowitsch { 6095d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 610354557abSToby Isaac 611354557abSToby Isaac PetscFunctionBegin; 612354557abSToby Isaac /* destroy the labels */ 613354557abSToby Isaac while (next) { 614354557abSToby Isaac DMLabelLink tmp = next->next; 615354557abSToby Isaac 6165d80c0bfSVaclav Hapla if (next->label == dm->depthLabel) dm->depthLabel = NULL; 617ba2698f1SMatthew G. Knepley if (next->label == dm->celltypeLabel) dm->celltypeLabel = NULL; 6189566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 6199566063dSJacob Faibussowitsch PetscCall(PetscFree(next)); 620354557abSToby Isaac next = tmp; 621354557abSToby Isaac } 6225d80c0bfSVaclav Hapla dm->labels = NULL; 6233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 624354557abSToby Isaac } 625354557abSToby Isaac 62666976f2fSJacob Faibussowitsch static PetscErrorCode DMDestroyCoordinates_Private(DMCoordinates *c) 627d71ae5a4SJacob Faibussowitsch { 6286858538eSMatthew G. Knepley PetscFunctionBegin; 6296858538eSMatthew G. Knepley c->dim = PETSC_DEFAULT; 6306858538eSMatthew G. Knepley PetscCall(DMDestroy(&c->dm)); 6316858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->x)); 6326858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->xl)); 6336858538eSMatthew G. Knepley PetscCall(DMFieldDestroy(&c->field)); 6343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6356858538eSMatthew G. Knepley } 6366858538eSMatthew G. Knepley 6371fb7b255SJunchao Zhang /*@C 638bb7acecfSBarry Smith DMDestroy - Destroys a `DM`. 63947c6ae99SBarry Smith 64020f4b53cSBarry Smith Collective 64147c6ae99SBarry Smith 64247c6ae99SBarry Smith Input Parameter: 643bb7acecfSBarry Smith . dm - the `DM` object to destroy 64447c6ae99SBarry Smith 64547c6ae99SBarry Smith Level: developer 64647c6ae99SBarry Smith 6471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMType`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 64847c6ae99SBarry Smith @*/ 649d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroy(DM *dm) 650d71ae5a4SJacob Faibussowitsch { 6516eb26441SStefano Zampini PetscInt cnt; 65247c6ae99SBarry Smith 65347c6ae99SBarry Smith PetscFunctionBegin; 6543ba16761SJacob Faibussowitsch if (!*dm) PetscFunctionReturn(PETSC_SUCCESS); 655f4f49eeaSPierre Jolivet PetscValidHeaderSpecific(*dm, DM_CLASSID, 1); 65687e657c6SBarry Smith 65788bdff64SToby Isaac /* count all non-cyclic references in the doubly-linked list of coarse<->fine meshes */ 65862e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(*dm, PETSC_TRUE, PETSC_TRUE, &cnt)); 659f4f49eeaSPierre Jolivet --((PetscObject)*dm)->refct; 6609371c9d4SSatish Balay if (--cnt > 0) { 6619371c9d4SSatish Balay *dm = NULL; 6623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6639371c9d4SSatish Balay } 664f4f49eeaSPierre Jolivet if (((PetscObject)*dm)->refct < 0) PetscFunctionReturn(PETSC_SUCCESS); 665f4f49eeaSPierre Jolivet ((PetscObject)*dm)->refct = 0; 6666eb26441SStefano Zampini 6679566063dSJacob Faibussowitsch PetscCall(DMClearGlobalVectors(*dm)); 6689566063dSJacob Faibussowitsch PetscCall(DMClearLocalVectors(*dm)); 669974ca4ecSStefano Zampini PetscCall(DMClearNamedGlobalVectors(*dm)); 670974ca4ecSStefano Zampini PetscCall(DMClearNamedLocalVectors(*dm)); 6712348bcf4SPeter Brune 672b17ce1afSJed Brown /* Destroy the list of hooks */ 673c833c3b5SJed Brown { 674c833c3b5SJed Brown DMCoarsenHookLink link, next; 675b17ce1afSJed Brown for (link = (*dm)->coarsenhook; link; link = next) { 676b17ce1afSJed Brown next = link->next; 6779566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 678b17ce1afSJed Brown } 6790298fd71SBarry Smith (*dm)->coarsenhook = NULL; 680c833c3b5SJed Brown } 681c833c3b5SJed Brown { 682c833c3b5SJed Brown DMRefineHookLink link, next; 683c833c3b5SJed Brown for (link = (*dm)->refinehook; link; link = next) { 684c833c3b5SJed Brown next = link->next; 6859566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 686c833c3b5SJed Brown } 6870298fd71SBarry Smith (*dm)->refinehook = NULL; 688c833c3b5SJed Brown } 689be081cd6SPeter Brune { 690be081cd6SPeter Brune DMSubDomainHookLink link, next; 691be081cd6SPeter Brune for (link = (*dm)->subdomainhook; link; link = next) { 692be081cd6SPeter Brune next = link->next; 6939566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 694be081cd6SPeter Brune } 6950298fd71SBarry Smith (*dm)->subdomainhook = NULL; 696be081cd6SPeter Brune } 697baf369e7SPeter Brune { 698baf369e7SPeter Brune DMGlobalToLocalHookLink link, next; 699baf369e7SPeter Brune for (link = (*dm)->gtolhook; link; link = next) { 700baf369e7SPeter Brune next = link->next; 7019566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 702baf369e7SPeter Brune } 7030298fd71SBarry Smith (*dm)->gtolhook = NULL; 704baf369e7SPeter Brune } 705d4d07f1eSToby Isaac { 706d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, next; 707d4d07f1eSToby Isaac for (link = (*dm)->ltoghook; link; link = next) { 708d4d07f1eSToby Isaac next = link->next; 7099566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 710d4d07f1eSToby Isaac } 711d4d07f1eSToby Isaac (*dm)->ltoghook = NULL; 712d4d07f1eSToby Isaac } 713aa1993deSMatthew G Knepley /* Destroy the work arrays */ 714aa1993deSMatthew G Knepley { 715aa1993deSMatthew G Knepley DMWorkLink link, next; 716936381afSPierre Jolivet PetscCheck(!(*dm)->workout, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Work array still checked out %p %p", (void *)(*dm)->workout, (void *)(*dm)->workout->mem); 717aa1993deSMatthew G Knepley for (link = (*dm)->workin; link; link = next) { 718aa1993deSMatthew G Knepley next = link->next; 7199566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 7209566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 721aa1993deSMatthew G Knepley } 7220298fd71SBarry Smith (*dm)->workin = NULL; 723aa1993deSMatthew G Knepley } 724c58f1c22SToby Isaac /* destroy the labels */ 7259566063dSJacob Faibussowitsch PetscCall(DMDestroyLabelLinkList_Internal(*dm)); 726f4cdcedcSVaclav Hapla /* destroy the fields */ 7279566063dSJacob Faibussowitsch PetscCall(DMClearFields(*dm)); 728f4cdcedcSVaclav Hapla /* destroy the boundaries */ 729e6f8dbb6SToby Isaac { 730e6f8dbb6SToby Isaac DMBoundary next = (*dm)->boundary; 731e6f8dbb6SToby Isaac while (next) { 732e6f8dbb6SToby Isaac DMBoundary b = next; 733e6f8dbb6SToby Isaac 734e6f8dbb6SToby Isaac next = b->next; 7359566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 736e6f8dbb6SToby Isaac } 737e6f8dbb6SToby Isaac } 738b17ce1afSJed Brown 7399566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmksp)); 7409566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmsnes)); 7419566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmts)); 74252536dc3SBarry Smith 74348a46eb9SPierre Jolivet if ((*dm)->ctx && (*dm)->ctxdestroy) PetscCall((*(*dm)->ctxdestroy)(&(*dm)->ctx)); 7449566063dSJacob Faibussowitsch PetscCall(MatFDColoringDestroy(&(*dm)->fd)); 7459566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&(*dm)->ltogmap)); 7469566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->vectype)); 7479566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->mattype)); 74888ed4aceSMatthew G Knepley 7499566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->localSection)); 7509566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->globalSection)); 751adc21957SMatthew G. Knepley PetscCall(PetscFree((*dm)->reorderSectionType)); 7529566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&(*dm)->map)); 7539566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->defaultConstraint.section)); 7549566063dSJacob Faibussowitsch PetscCall(MatDestroy(&(*dm)->defaultConstraint.mat)); 7559566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sf)); 7569566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sectionSF)); 75748a46eb9SPierre Jolivet if ((*dm)->sfNatural) PetscCall(PetscSFDestroy(&(*dm)->sfNatural)); 7589566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)(*dm)->sfMigration)); 759e4d5475eSStefano Zampini PetscCall(DMClearAuxiliaryVec(*dm)); 7609566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDestroy(&(*dm)->auxData)); 76148a46eb9SPierre Jolivet if ((*dm)->coarseMesh && (*dm)->coarseMesh->fineMesh == *dm) PetscCall(DMSetFineDM((*dm)->coarseMesh, NULL)); 7626eb26441SStefano Zampini 7639566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->coarseMesh)); 76448a46eb9SPierre Jolivet if ((*dm)->fineMesh && (*dm)->fineMesh->coarseMesh == *dm) PetscCall(DMSetCoarseDM((*dm)->fineMesh, NULL)); 7659566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->fineMesh)); 7664fb89dddSMatthew G. Knepley PetscCall(PetscFree((*dm)->Lstart)); 7679566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->L)); 7689566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->maxCell)); 7696858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[0])); 7706858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[1])); 7719566063dSJacob Faibussowitsch if ((*dm)->transformDestroy) PetscCall((*(*dm)->transformDestroy)(*dm, (*dm)->transformCtx)); 7729566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->transformDM)); 7739566063dSJacob Faibussowitsch PetscCall(VecDestroy(&(*dm)->transform)); 774*ddedc8f6SJames Wright for (PetscInt i = 0; i < (*dm)->periodic.num_affines; i++) { 775*ddedc8f6SJames Wright PetscCall(VecScatterDestroy(&(*dm)->periodic.affine_to_local[i])); 776*ddedc8f6SJames Wright PetscCall(VecDestroy(&(*dm)->periodic.affine[i])); 777*ddedc8f6SJames Wright } 778*ddedc8f6SJames Wright if ((*dm)->periodic.num_affines > 0) PetscCall(PetscFree2((*dm)->periodic.affine_to_local, (*dm)->periodic.affine)); 7796636e97aSMatthew G Knepley 7809566063dSJacob Faibussowitsch PetscCall(DMClearDS(*dm)); 7819566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->dmBC)); 782e04113cfSBarry Smith /* if memory was published with SAWs then destroy it */ 7839566063dSJacob Faibussowitsch PetscCall(PetscObjectSAWsViewOff((PetscObject)*dm)); 784732e2eb9SMatthew G Knepley 785213acdd3SPierre Jolivet PetscTryTypeMethod(*dm, destroy); 7869566063dSJacob Faibussowitsch PetscCall(DMMonitorCancel(*dm)); 787d2b2dc1eSMatthew G. Knepley PetscCall(DMCeedDestroy(&(*dm)->dmceed)); 788f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 7899566063dSJacob Faibussowitsch PetscCallCEED(CeedElemRestrictionDestroy(&(*dm)->ceedERestrict)); 7909566063dSJacob Faibussowitsch PetscCallCEED(CeedDestroy(&(*dm)->ceed)); 791f918ec44SMatthew G. Knepley #endif 792435a35e8SMatthew G Knepley /* We do not destroy (*dm)->data here so that we can reference count backend objects */ 7939566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(dm)); 7943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 79547c6ae99SBarry Smith } 79647c6ae99SBarry Smith 797d7bf68aeSBarry Smith /*@ 798bb7acecfSBarry Smith DMSetUp - sets up the data structures inside a `DM` object 799d7bf68aeSBarry Smith 80020f4b53cSBarry Smith Collective 801d7bf68aeSBarry Smith 802d7bf68aeSBarry Smith Input Parameter: 803bb7acecfSBarry Smith . dm - the `DM` object to setup 804d7bf68aeSBarry Smith 805bb7acecfSBarry Smith Level: intermediate 806d7bf68aeSBarry Smith 807bb7acecfSBarry Smith Note: 808bb7acecfSBarry Smith This is usually called after various parameter setting operations and `DMSetFromOptions()` are called on the `DM` 809bb7acecfSBarry Smith 8101cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 811d7bf68aeSBarry Smith @*/ 812d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUp(DM dm) 813d71ae5a4SJacob Faibussowitsch { 814d7bf68aeSBarry Smith PetscFunctionBegin; 815171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8163ba16761SJacob Faibussowitsch if (dm->setupcalled) PetscFunctionReturn(PETSC_SUCCESS); 817dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setup); 8188387afaaSJed Brown dm->setupcalled = PETSC_TRUE; 8193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 820d7bf68aeSBarry Smith } 821d7bf68aeSBarry Smith 822d7bf68aeSBarry Smith /*@ 823bb7acecfSBarry Smith DMSetFromOptions - sets parameters in a `DM` from the options database 824d7bf68aeSBarry Smith 82520f4b53cSBarry Smith Collective 826d7bf68aeSBarry Smith 827d7bf68aeSBarry Smith Input Parameter: 828bb7acecfSBarry Smith . dm - the `DM` object to set options for 829d7bf68aeSBarry Smith 83020f4b53cSBarry Smith Options Database Keys: 831bb7acecfSBarry Smith + -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 832bb7acecfSBarry Smith . -dm_vec_type <type> - type of vector to create inside `DM` 833bb7acecfSBarry Smith . -dm_mat_type <type> - type of matrix to create inside `DM` 834a4ea9b21SRichard Tran Mills . -dm_is_coloring_type - <global or local> 83520f4b53cSBarry Smith . -dm_bind_below <n> - bind (force execution on CPU) for `Vec` and `Mat` objects with local size (number of vector entries or matrix rows) below n; currently only supported for `DMDA` 83620f4b53cSBarry Smith . -dm_plex_filename <str> - File containing a mesh 8379318fe57SMatthew G. Knepley . -dm_plex_boundary_filename <str> - File containing a mesh boundary 838cd7e8a5eSksagiyam . -dm_plex_name <str> - Name of the mesh in the file 8395dca41c3SJed Brown . -dm_plex_shape <shape> - The domain shape, such as `BOX`, `SPHERE`, etc. 8409318fe57SMatthew G. Knepley . -dm_plex_cell <ct> - Cell shape 8419318fe57SMatthew G. Knepley . -dm_plex_reference_cell_domain <bool> - Use a reference cell domain 8429318fe57SMatthew G. Knepley . -dm_plex_dim <dim> - Set the topological dimension 843bb7acecfSBarry Smith . -dm_plex_simplex <bool> - `PETSC_TRUE` for simplex elements, `PETSC_FALSE` for tensor elements 844bb7acecfSBarry Smith . -dm_plex_interpolate <bool> - `PETSC_TRUE` turns on topological interpolation (creating edges and faces) 8459318fe57SMatthew G. Knepley . -dm_plex_scale <sc> - Scale factor for mesh coordinates 846be664eb1SMatthew G. Knepley . -dm_coord_remap <bool> - Map coordinates using a function 847be664eb1SMatthew G. Knepley . -dm_coord_map <mapname> - Select a builtin coordinate map 848be664eb1SMatthew G. Knepley . -dm_coord_map_params <p0,p1,p2,...> - Set coordinate mapping parameters 8499318fe57SMatthew G. Knepley . -dm_plex_box_faces <m,n,p> - Number of faces along each dimension 8509318fe57SMatthew G. Knepley . -dm_plex_box_lower <x,y,z> - Specify lower-left-bottom coordinates for the box 8519318fe57SMatthew G. Knepley . -dm_plex_box_upper <x,y,z> - Specify upper-right-top coordinates for the box 852bb7acecfSBarry Smith . -dm_plex_box_bd <bx,by,bz> - Specify the `DMBoundaryType` for each direction 8539318fe57SMatthew G. Knepley . -dm_plex_sphere_radius <r> - The sphere radius 8549318fe57SMatthew G. Knepley . -dm_plex_ball_radius <r> - Radius of the ball 8559318fe57SMatthew G. Knepley . -dm_plex_cylinder_bd <bz> - Boundary type in the z direction 8569318fe57SMatthew G. Knepley . -dm_plex_cylinder_num_wedges <n> - Number of wedges around the cylinder 857bdf63967SMatthew G. Knepley . -dm_plex_reorder <order> - Reorder the mesh using the specified algorithm 8589318fe57SMatthew G. Knepley . -dm_refine_pre <n> - The number of refinements before distribution 8599318fe57SMatthew G. Knepley . -dm_refine_uniform_pre <bool> - Flag for uniform refinement before distribution 8609318fe57SMatthew G. Knepley . -dm_refine_volume_limit_pre <v> - The maximum cell volume after refinement before distribution 8619318fe57SMatthew G. Knepley . -dm_refine <n> - The number of refinements after distribution 862bdf63967SMatthew G. Knepley . -dm_extrude <l> - Activate extrusion and specify the number of layers to extrude 863d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thickness <t> - The total thickness of extruded layers 864d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_use_tensor <bool> - Use tensor cells when extruding 865d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_symmetric <bool> - Extrude layers symmetrically about the surface 866d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_normal <n0,...,nd> - Specify the extrusion direction 867d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thicknesses <t0,...,tl> - Specify thickness of each layer 868909dfd52SMatthew G. Knepley . -dm_plex_create_fv_ghost_cells - Flag to create finite volume ghost cells on the boundary 869909dfd52SMatthew G. Knepley . -dm_plex_fv_ghost_cells_label <name> - Label name for ghost cells boundary 8709318fe57SMatthew G. Knepley . -dm_distribute <bool> - Flag to redistribute a mesh among processes 8719318fe57SMatthew G. Knepley . -dm_distribute_overlap <n> - The size of the overlap halo 8729318fe57SMatthew G. Knepley . -dm_plex_adj_cone <bool> - Set adjacency direction 87320f4b53cSBarry Smith . -dm_plex_adj_closure <bool> - Set adjacency size 874d2b2dc1eSMatthew G. Knepley . -dm_plex_use_ceed <bool> - Use LibCEED as the FEM backend 87520f4b53cSBarry Smith . -dm_plex_check_symmetry - Check that the adjacency information in the mesh is symmetric - `DMPlexCheckSymmetry()` 876bb7acecfSBarry Smith . -dm_plex_check_skeleton - Check that each cell has the correct number of vertices (only for homogeneous simplex or tensor meshes) - `DMPlexCheckSkeleton()` 877bb7acecfSBarry Smith . -dm_plex_check_faces - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type - `DMPlexCheckFaces()` 878bb7acecfSBarry Smith . -dm_plex_check_geometry - Check that cells have positive volume - `DMPlexCheckGeometry()` 879bb7acecfSBarry Smith . -dm_plex_check_pointsf - Check some necessary conditions for `PointSF` - `DMPlexCheckPointSF()` 880bb7acecfSBarry Smith . -dm_plex_check_interface_cones - Check points on inter-partition interfaces have conforming order of cone points - `DMPlexCheckInterfaceCones()` 881384a6580SVaclav Hapla - -dm_plex_check_all - Perform all the checks above 882d7bf68aeSBarry Smith 88395eb5ee5SVaclav Hapla Level: intermediate 88495eb5ee5SVaclav Hapla 8851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 886bb7acecfSBarry Smith `DMPlexCheckSymmetry()`, `DMPlexCheckSkeleton()`, `DMPlexCheckFaces()`, `DMPlexCheckGeometry()`, `DMPlexCheckPointSF()`, `DMPlexCheckInterfaceCones()`, 88760225df5SJacob Faibussowitsch `DMSetOptionsPrefix()`, `DMType`, `DMPLEX`, `DMDA` 888d7bf68aeSBarry Smith @*/ 889d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFromOptions(DM dm) 890d71ae5a4SJacob Faibussowitsch { 8917781c08eSBarry Smith char typeName[256]; 892ca266f36SBarry Smith PetscBool flg; 893d7bf68aeSBarry Smith 894d7bf68aeSBarry Smith PetscFunctionBegin; 895171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 89649be4549SMatthew G. Knepley dm->setfromoptionscalled = PETSC_TRUE; 8979566063dSJacob Faibussowitsch if (dm->sf) PetscCall(PetscSFSetFromOptions(dm->sf)); 8989566063dSJacob Faibussowitsch if (dm->sectionSF) PetscCall(PetscSFSetFromOptions(dm->sectionSF)); 899dd4c3f67SMatthew G. Knepley if (dm->coordinates[0].dm) PetscCall(DMSetFromOptions(dm->coordinates[0].dm)); 900d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)dm); 9019566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_preallocate_only", "only preallocate matrix, but do not set column indices", "DMSetMatrixPreallocateOnly", dm->prealloc_only, &dm->prealloc_only, NULL)); 9029566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_vec_type", "Vector type used for created vectors", "DMSetVecType", VecList, dm->vectype, typeName, 256, &flg)); 9031baa6e33SBarry Smith if (flg) PetscCall(DMSetVecType(dm, typeName)); 9049566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_mat_type", "Matrix type used for created matrices", "DMSetMatType", MatList, dm->mattype ? dm->mattype : typeName, typeName, sizeof(typeName), &flg)); 9051baa6e33SBarry Smith if (flg) PetscCall(DMSetMatType(dm, typeName)); 906863027abSJed Brown PetscCall(PetscOptionsEnum("-dm_blocking_type", "Topological point or field node blocking", "DMSetBlockingType", DMBlockingTypes, (PetscEnum)dm->blocking_type, (PetscEnum *)&dm->blocking_type, NULL)); 9079566063dSJacob Faibussowitsch PetscCall(PetscOptionsEnum("-dm_is_coloring_type", "Global or local coloring of Jacobian", "DMSetISColoringType", ISColoringTypes, (PetscEnum)dm->coloringtype, (PetscEnum *)&dm->coloringtype, NULL)); 9089566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-dm_bind_below", "Set the size threshold (in entries) below which the Vec is bound to the CPU", "VecBindToCPU", dm->bind_below, &dm->bind_below, &flg)); 909eb9d3e4dSMatthew G. Knepley PetscCall(PetscOptionsBool("-dm_ignore_perm_output", "Ignore the local section permutation on output", "DMGetOutputDM", dm->ignorePermOutput, &dm->ignorePermOutput, NULL)); 910dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setfromoptions, PetscOptionsObject); 911f9ba7244SBarry Smith /* process any options handlers added with PetscObjectAddOptionsHandler() */ 912dbbe0bcdSBarry Smith PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)dm, PetscOptionsObject)); 913d0609cedSBarry Smith PetscOptionsEnd(); 9143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 915d7bf68aeSBarry Smith } 916d7bf68aeSBarry Smith 917fc9bc008SSatish Balay /*@C 918bb7acecfSBarry Smith DMViewFromOptions - View a `DM` in a particular way based on a request in the options database 919fe2efc57SMark 92020f4b53cSBarry Smith Collective 921fe2efc57SMark 922fe2efc57SMark Input Parameters: 923bb7acecfSBarry Smith + dm - the `DM` object 92420f4b53cSBarry Smith . obj - optional object that provides the prefix for the options database (if `NULL` then the prefix in obj is used) 92560225df5SJacob Faibussowitsch - name - option string that is used to activate viewing 926fe2efc57SMark 927fe2efc57SMark Level: intermediate 928bb7acecfSBarry Smith 929bb7acecfSBarry Smith Note: 930bb7acecfSBarry Smith See `PetscObjectViewFromOptions()` for a list of values that can be provided in the options database to determine how the `DM` is viewed 931bb7acecfSBarry Smith 93260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `PetscObjectViewFromOptions()`, `DMCreate()` 933fe2efc57SMark @*/ 934d71ae5a4SJacob Faibussowitsch PetscErrorCode DMViewFromOptions(DM dm, PetscObject obj, const char name[]) 935d71ae5a4SJacob Faibussowitsch { 936fe2efc57SMark PetscFunctionBegin; 937fe2efc57SMark PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9389566063dSJacob Faibussowitsch PetscCall(PetscObjectViewFromOptions((PetscObject)dm, obj, name)); 9393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 940fe2efc57SMark } 941fe2efc57SMark 942fe2efc57SMark /*@C 943bb7acecfSBarry Smith DMView - Views a `DM`. Depending on the `PetscViewer` and its `PetscViewerFormat` it may print some ASCII information about the `DM` to the screen or a file or 944bb7acecfSBarry Smith save the `DM` in a binary file to be loaded later or create a visualization of the `DM` 94547c6ae99SBarry Smith 94620f4b53cSBarry Smith Collective 94747c6ae99SBarry Smith 948d8d19677SJose E. Roman Input Parameters: 949bb7acecfSBarry Smith + dm - the `DM` object to view 95047c6ae99SBarry Smith - v - the viewer 95147c6ae99SBarry Smith 95220f4b53cSBarry Smith Level: beginner 95320f4b53cSBarry Smith 954cd7e8a5eSksagiyam Notes: 955bb7acecfSBarry Smith Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` as the `PetscViewerFormat` one can save multiple `DMPLEX` 956bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 957bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 958cd7e8a5eSksagiyam 9591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewer`, `PetscViewerFormat`, `PetscViewerSetFormat()`, `DMDestroy()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMLoad()`, `PetscObjectSetName()` 96047c6ae99SBarry Smith @*/ 961d71ae5a4SJacob Faibussowitsch PetscErrorCode DMView(DM dm, PetscViewer v) 962d71ae5a4SJacob Faibussowitsch { 96332c0f0efSBarry Smith PetscBool isbinary; 96476a8abe0SBarry Smith PetscMPIInt size; 96576a8abe0SBarry Smith PetscViewerFormat format; 96647c6ae99SBarry Smith 96747c6ae99SBarry Smith PetscFunctionBegin; 968171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 96948a46eb9SPierre Jolivet if (!v) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &v)); 970b1b135c8SBarry Smith PetscValidHeaderSpecific(v, PETSC_VIEWER_CLASSID, 2); 97174903a4fSStefano Zampini /* Ideally, we would like to have this test on. 97274903a4fSStefano Zampini However, it currently breaks socket viz via GLVis. 97374903a4fSStefano Zampini During DMView(parallel_mesh,glvis_viewer), each 97474903a4fSStefano Zampini process opens a sequential ASCII socket to visualize 97574903a4fSStefano Zampini the local mesh, and PetscObjectView(dm,local_socket) 97674903a4fSStefano Zampini is internally called inside VecView_GLVis, incurring 97774903a4fSStefano Zampini in an error here */ 97874903a4fSStefano Zampini /* PetscCheckSameComm(dm,1,v,2); */ 9799566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckWritable(v)); 980b1b135c8SBarry Smith 9819566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(v, &format)); 9829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 9833ba16761SJacob Faibussowitsch if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(PETSC_SUCCESS); 9849566063dSJacob Faibussowitsch PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)dm, v)); 9859566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)v, PETSCVIEWERBINARY, &isbinary)); 98632c0f0efSBarry Smith if (isbinary) { 98755849f57SBarry Smith PetscInt classid = DM_FILE_CLASSID; 98832c0f0efSBarry Smith char type[256]; 98932c0f0efSBarry Smith 9909566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, &classid, 1, PETSC_INT)); 991c6a7a370SJeremy L Thompson PetscCall(PetscStrncpy(type, ((PetscObject)dm)->type_name, sizeof(type))); 9929566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, type, 256, PETSC_CHAR)); 99332c0f0efSBarry Smith } 994dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, view, v); 9953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 99647c6ae99SBarry Smith } 99747c6ae99SBarry Smith 99847c6ae99SBarry Smith /*@ 999bb7acecfSBarry Smith DMCreateGlobalVector - Creates a global vector from a `DM` object. A global vector is a parallel vector that has no duplicate values shared between MPI ranks, 1000bb7acecfSBarry Smith that is it has no ghost locations. 100147c6ae99SBarry Smith 100220f4b53cSBarry Smith Collective 100347c6ae99SBarry Smith 100447c6ae99SBarry Smith Input Parameter: 1005bb7acecfSBarry Smith . dm - the `DM` object 100647c6ae99SBarry Smith 100747c6ae99SBarry Smith Output Parameter: 100847c6ae99SBarry Smith . vec - the global vector 100947c6ae99SBarry Smith 1010073dac72SJed Brown Level: beginner 101147c6ae99SBarry Smith 10121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1013bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 101447c6ae99SBarry Smith @*/ 1015d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateGlobalVector(DM dm, Vec *vec) 1016d71ae5a4SJacob Faibussowitsch { 101747c6ae99SBarry Smith PetscFunctionBegin; 1018171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10194f572ea9SToby Isaac PetscAssertPointer(vec, 2); 1020dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createglobalvector, vec); 102176bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1022c6b011d8SStefano Zampini DM vdm; 1023c6b011d8SStefano Zampini 10249566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10257a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1026c6b011d8SStefano Zampini } 10273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 102847c6ae99SBarry Smith } 102947c6ae99SBarry Smith 103047c6ae99SBarry Smith /*@ 1031bb7acecfSBarry Smith DMCreateLocalVector - Creates a local vector from a `DM` object. 103247c6ae99SBarry Smith 103347c6ae99SBarry Smith Not Collective 103447c6ae99SBarry Smith 103547c6ae99SBarry Smith Input Parameter: 1036bb7acecfSBarry Smith . dm - the `DM` object 103747c6ae99SBarry Smith 103847c6ae99SBarry Smith Output Parameter: 103947c6ae99SBarry Smith . vec - the local vector 104047c6ae99SBarry Smith 1041073dac72SJed Brown Level: beginner 104247c6ae99SBarry Smith 104320f4b53cSBarry Smith Note: 1044bb7acecfSBarry Smith A local vector usually has ghost locations that contain values that are owned by different MPI ranks. A global vector has no ghost locations. 1045bb7acecfSBarry Smith 10461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 1047bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 104847c6ae99SBarry Smith @*/ 1049d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLocalVector(DM dm, Vec *vec) 1050d71ae5a4SJacob Faibussowitsch { 105147c6ae99SBarry Smith PetscFunctionBegin; 1052171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10534f572ea9SToby Isaac PetscAssertPointer(vec, 2); 1054dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalvector, vec); 105576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1056c6b011d8SStefano Zampini DM vdm; 1057c6b011d8SStefano Zampini 10589566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10597a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_LIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1060c6b011d8SStefano Zampini } 10613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 106247c6ae99SBarry Smith } 106347c6ae99SBarry Smith 10641411c6eeSJed Brown /*@ 1065bb7acecfSBarry Smith DMGetLocalToGlobalMapping - Accesses the local-to-global mapping in a `DM`. 10661411c6eeSJed Brown 106720f4b53cSBarry Smith Collective 10681411c6eeSJed Brown 10691411c6eeSJed Brown Input Parameter: 1070bb7acecfSBarry Smith . dm - the `DM` that provides the mapping 10711411c6eeSJed Brown 10721411c6eeSJed Brown Output Parameter: 10731411c6eeSJed Brown . ltog - the mapping 10741411c6eeSJed Brown 1075bb7acecfSBarry Smith Level: advanced 10761411c6eeSJed Brown 10771411c6eeSJed Brown Notes: 1078bb7acecfSBarry Smith The global to local mapping allows one to set values into the global vector or matrix using `VecSetValuesLocal()` and `MatSetValuesLocal()` 10791411c6eeSJed Brown 1080bb7acecfSBarry Smith Vectors obtained with `DMCreateGlobalVector()` and matrices obtained with `DMCreateMatrix()` already contain the global mapping so you do 1081bb7acecfSBarry Smith need to use this function with those objects. 1082bb7acecfSBarry Smith 1083bb7acecfSBarry Smith This mapping can then be used by `VecSetLocalToGlobalMapping()` or `MatSetLocalToGlobalMapping()`. 1084bb7acecfSBarry Smith 108560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `VecSetLocalToGlobalMapping()`, `MatSetLocalToGlobalMapping()`, 1086bb7acecfSBarry Smith `DMCreateMatrix()` 10871411c6eeSJed Brown @*/ 1088d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalToGlobalMapping(DM dm, ISLocalToGlobalMapping *ltog) 1089d71ae5a4SJacob Faibussowitsch { 10900be3e97aSMatthew G. Knepley PetscInt bs = -1, bsLocal[2], bsMinMax[2]; 10911411c6eeSJed Brown 10921411c6eeSJed Brown PetscFunctionBegin; 10931411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10944f572ea9SToby Isaac PetscAssertPointer(ltog, 2); 10951411c6eeSJed Brown if (!dm->ltogmap) { 109637d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 109737d0c07bSMatthew G Knepley 10989566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 109937d0c07bSMatthew G Knepley if (section) { 1100a974ec88SMatthew G. Knepley const PetscInt *cdofs; 110137d0c07bSMatthew G Knepley PetscInt *ltog; 1102ccf3bd66SMatthew G. Knepley PetscInt pStart, pEnd, n, p, k, l; 110337d0c07bSMatthew G Knepley 11049566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 11059566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 11069566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(section, &n)); 11079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, <og)); /* We want the local+overlap size */ 110837d0c07bSMatthew G Knepley for (p = pStart, l = 0; p < pEnd; ++p) { 1109e6befd46SJed Brown PetscInt bdof, cdof, dof, off, c, cind; 111037d0c07bSMatthew G Knepley 111137d0c07bSMatthew G Knepley /* Should probably use constrained dofs */ 11129566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, p, &dof)); 11139566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(section, p, &cdof)); 11149566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(section, p, &cdofs)); 11159566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &off)); 11161a7dc684SMatthew G. Knepley /* If you have dofs, and constraints, and they are unequal, we set the blocksize to 1 */ 11171a7dc684SMatthew G. Knepley bdof = cdof && (dof - cdof) ? 1 : dof; 1118ad540459SPierre Jolivet if (dof) bs = bs < 0 ? bdof : PetscGCD(bs, bdof); 11195227eafbSStefano Zampini 1120e6befd46SJed Brown for (c = 0, cind = 0; c < dof; ++c, ++l) { 11215227eafbSStefano Zampini if (cind < cdof && c == cdofs[cind]) { 1122e6befd46SJed Brown ltog[l] = off < 0 ? off - c : -(off + c + 1); 1123e6befd46SJed Brown cind++; 1124e6befd46SJed Brown } else { 11255227eafbSStefano Zampini ltog[l] = (off < 0 ? -(off + 1) : off) + c - cind; 1126e6befd46SJed Brown } 112737d0c07bSMatthew G Knepley } 112837d0c07bSMatthew G Knepley } 1129bff27382SMatthew G. Knepley /* Must have same blocksize on all procs (some might have no points) */ 11309371c9d4SSatish Balay bsLocal[0] = bs < 0 ? PETSC_MAX_INT : bs; 11319371c9d4SSatish Balay bsLocal[1] = bs; 11329566063dSJacob Faibussowitsch PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)dm), bsLocal, bsMinMax)); 11339371c9d4SSatish Balay if (bsMinMax[0] != bsMinMax[1]) { 11349371c9d4SSatish Balay bs = 1; 11359371c9d4SSatish Balay } else { 11369371c9d4SSatish Balay bs = bsMinMax[0]; 11379371c9d4SSatish Balay } 11387591dbb2SMatthew G. Knepley bs = bs < 0 ? 1 : bs; 11397591dbb2SMatthew G. Knepley /* Must reduce indices by blocksize */ 1140ccf3bd66SMatthew G. Knepley if (bs > 1) { 1141ca469d19SJed Brown for (l = 0, k = 0; l < n; l += bs, ++k) { 1142ca469d19SJed Brown // Integer division of negative values truncates toward zero(!), not toward negative infinity 1143ca469d19SJed Brown ltog[k] = ltog[l] >= 0 ? ltog[l] / bs : -(-(ltog[l] + 1) / bs + 1); 1144ca469d19SJed Brown } 1145ccf3bd66SMatthew G. Knepley n /= bs; 1146ccf3bd66SMatthew G. Knepley } 11479566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm), bs, n, ltog, PETSC_OWN_POINTER, &dm->ltogmap)); 1148dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, getlocaltoglobalmapping); 114937d0c07bSMatthew G Knepley } 11501411c6eeSJed Brown *ltog = dm->ltogmap; 11513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11521411c6eeSJed Brown } 11531411c6eeSJed Brown 11541411c6eeSJed Brown /*@ 1155bb7acecfSBarry Smith DMGetBlockSize - Gets the inherent block size associated with a `DM` 11561411c6eeSJed Brown 11571411c6eeSJed Brown Not Collective 11581411c6eeSJed Brown 11591411c6eeSJed Brown Input Parameter: 1160bb7acecfSBarry Smith . dm - the `DM` with block structure 11611411c6eeSJed Brown 11621411c6eeSJed Brown Output Parameter: 11631411c6eeSJed Brown . bs - the block size, 1 implies no exploitable block structure 11641411c6eeSJed Brown 11651411c6eeSJed Brown Level: intermediate 11661411c6eeSJed Brown 1167bb7acecfSBarry Smith Note: 1168bb7acecfSBarry Smith This might be the number of degrees of freedom at each grid point for a structured grid. 1169bb7acecfSBarry Smith 1170bb7acecfSBarry Smith Complex `DM` that represent multiphysics or staggered grids or mixed-methods do not generally have a single inherent block size, but 1171bb7acecfSBarry Smith rather different locations in the vectors may have a different block size. 1172bb7acecfSBarry Smith 11731cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISCreateBlock()`, `VecSetBlockSize()`, `MatSetBlockSize()`, `DMGetLocalToGlobalMapping()` 11741411c6eeSJed Brown @*/ 1175d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBlockSize(DM dm, PetscInt *bs) 1176d71ae5a4SJacob Faibussowitsch { 11771411c6eeSJed Brown PetscFunctionBegin; 11781411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11794f572ea9SToby Isaac PetscAssertPointer(bs, 2); 11807a8be351SBarry Smith PetscCheck(dm->bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM does not have enough information to provide a block size yet"); 11811411c6eeSJed Brown *bs = dm->bs; 11823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11831411c6eeSJed Brown } 11841411c6eeSJed Brown 118548eeb7c8SBarry Smith /*@C 1186bb7acecfSBarry Smith DMCreateInterpolation - Gets the interpolation matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1187bb7acecfSBarry Smith `DMCreateGlobalVector()` on the coarse `DM` to similar vectors on the fine grid `DM`. 118847c6ae99SBarry Smith 118920f4b53cSBarry Smith Collective 119047c6ae99SBarry Smith 1191d8d19677SJose E. Roman Input Parameters: 1192bb7acecfSBarry Smith + dmc - the `DM` object 1193bb7acecfSBarry Smith - dmf - the second, finer `DM` object 119447c6ae99SBarry Smith 1195d8d19677SJose E. Roman Output Parameters: 119647c6ae99SBarry Smith + mat - the interpolation 1197bb7acecfSBarry Smith - vec - the scaling (optional), see `DMCreateInterpolationScale()` 119847c6ae99SBarry Smith 119947c6ae99SBarry Smith Level: developer 120047c6ae99SBarry Smith 120195452b02SPatrick Sanan Notes: 1202bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1203bb7acecfSBarry Smith DMCoarsen(). The coordinates set into the `DMDA` are completely ignored in computing the interpolation. 1204d52bd9f3SBarry Smith 1205bb7acecfSBarry Smith For `DMDA` objects you can use this interpolation (more precisely the interpolation from the `DMGetCoordinateDM()`) to interpolate the mesh coordinate 1206bb7acecfSBarry Smith vectors EXCEPT in the periodic case where it does not make sense since the coordinate vectors are not periodic. 120785afcc9aSBarry Smith 12081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolationScale()` 120947c6ae99SBarry Smith @*/ 1210d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolation(DM dmc, DM dmf, Mat *mat, Vec *vec) 1211d71ae5a4SJacob Faibussowitsch { 121247c6ae99SBarry Smith PetscFunctionBegin; 1213a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1214a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 12154f572ea9SToby Isaac PetscAssertPointer(mat, 3); 12169566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInterpolation, dmc, dmf, 0, 0)); 1217dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createinterpolation, dmf, mat, vec); 12189566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInterpolation, dmc, dmf, 0, 0)); 12193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 122047c6ae99SBarry Smith } 122147c6ae99SBarry Smith 12223ad4599aSBarry Smith /*@ 1223a4e35b19SJacob Faibussowitsch DMCreateInterpolationScale - Forms L = 1/(R*1) where 1 is the vector of all ones, and R is 1224a4e35b19SJacob Faibussowitsch the transpose of the interpolation between the `DM`. 12252ed6491fSPatrick Sanan 12262ed6491fSPatrick Sanan Input Parameters: 1227bb7acecfSBarry Smith + dac - `DM` that defines a coarse mesh 1228bb7acecfSBarry Smith . daf - `DM` that defines a fine mesh 12292ed6491fSPatrick Sanan - mat - the restriction (or interpolation operator) from fine to coarse 12302ed6491fSPatrick Sanan 12312ed6491fSPatrick Sanan Output Parameter: 12322ed6491fSPatrick Sanan . scale - the scaled vector 12332ed6491fSPatrick Sanan 1234bb7acecfSBarry Smith Level: advanced 12352ed6491fSPatrick Sanan 1236a4e35b19SJacob Faibussowitsch Notes: 1237a4e35b19SJacob Faibussowitsch xcoarse = diag(L)*R*xfine preserves scale and is thus suitable for state (versus residual) 1238a4e35b19SJacob Faibussowitsch restriction. In other words xcoarse is the coarse representation of xfine. 1239a4e35b19SJacob Faibussowitsch 124060225df5SJacob Faibussowitsch Developer Notes: 1241bb7acecfSBarry Smith If the fine-scale `DMDA` has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()` 1242e9c74fd6SRichard Tran Mills on the restriction/interpolation operator to set the bindingpropagates flag to true. 1243e9c74fd6SRichard Tran Mills 124460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatRestrict()`, `MatInterpolate()`, `DMCreateInterpolation()`, `DMCreateRestriction()`, `DMCreateGlobalVector()` 12452ed6491fSPatrick Sanan @*/ 1246d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolationScale(DM dac, DM daf, Mat mat, Vec *scale) 1247d71ae5a4SJacob Faibussowitsch { 12482ed6491fSPatrick Sanan Vec fine; 12492ed6491fSPatrick Sanan PetscScalar one = 1.0; 12509704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 1251e9c74fd6SRichard Tran Mills PetscBool bindingpropagates, isbound; 12529704db99SRichard Tran Mills #endif 12532ed6491fSPatrick Sanan 12542ed6491fSPatrick Sanan PetscFunctionBegin; 12559566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(daf, &fine)); 12569566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(dac, scale)); 12579566063dSJacob Faibussowitsch PetscCall(VecSet(fine, one)); 12589704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 12599704db99SRichard Tran Mills /* If the 'fine' Vec is bound to the CPU, it makes sense to bind 'mat' as well. 12609704db99SRichard Tran Mills * Note that we only do this for the CUDA case, right now, but if we add support for MatMultTranspose() via ViennaCL, 12619704db99SRichard Tran Mills * we'll need to do it for that case, too.*/ 12629566063dSJacob Faibussowitsch PetscCall(VecGetBindingPropagates(fine, &bindingpropagates)); 1263e9c74fd6SRichard Tran Mills if (bindingpropagates) { 12649566063dSJacob Faibussowitsch PetscCall(MatSetBindingPropagates(mat, PETSC_TRUE)); 12659566063dSJacob Faibussowitsch PetscCall(VecBoundToCPU(fine, &isbound)); 12669566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mat, isbound)); 126783aa49f4SRichard Tran Mills } 12689704db99SRichard Tran Mills #endif 12699566063dSJacob Faibussowitsch PetscCall(MatRestrict(mat, fine, *scale)); 12709566063dSJacob Faibussowitsch PetscCall(VecDestroy(&fine)); 12719566063dSJacob Faibussowitsch PetscCall(VecReciprocal(*scale)); 12723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12732ed6491fSPatrick Sanan } 12742ed6491fSPatrick Sanan 12752ed6491fSPatrick Sanan /*@ 1276bb7acecfSBarry Smith DMCreateRestriction - Gets restriction matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1277bb7acecfSBarry Smith `DMCreateGlobalVector()` on the fine `DM` to similar vectors on the coarse grid `DM`. 12783ad4599aSBarry Smith 127920f4b53cSBarry Smith Collective 12803ad4599aSBarry Smith 1281d8d19677SJose E. Roman Input Parameters: 1282bb7acecfSBarry Smith + dmc - the `DM` object 1283bb7acecfSBarry Smith - dmf - the second, finer `DM` object 12843ad4599aSBarry Smith 12853ad4599aSBarry Smith Output Parameter: 12863ad4599aSBarry Smith . mat - the restriction 12873ad4599aSBarry Smith 12883ad4599aSBarry Smith Level: developer 12893ad4599aSBarry Smith 1290bb7acecfSBarry Smith Note: 1291bb7acecfSBarry Smith This only works for `DMSTAG`. For many situations either the transpose of the operator obtained with `DMCreateInterpolation()` or that 1292bb7acecfSBarry Smith matrix multiplied by the vector obtained with `DMCreateInterpolationScale()` provides the desired object. 12933ad4599aSBarry Smith 12941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRestrict()`, `DMInterpolate()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateInterpolation()` 12953ad4599aSBarry Smith @*/ 1296d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateRestriction(DM dmc, DM dmf, Mat *mat) 1297d71ae5a4SJacob Faibussowitsch { 12983ad4599aSBarry Smith PetscFunctionBegin; 1299a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1300a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 13014f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13029566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateRestriction, dmc, dmf, 0, 0)); 1303dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createrestriction, dmf, mat); 13049566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateRestriction, dmc, dmf, 0, 0)); 13053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13063ad4599aSBarry Smith } 13073ad4599aSBarry Smith 130847c6ae99SBarry Smith /*@ 1309a4e35b19SJacob Faibussowitsch DMCreateInjection - Gets injection matrix between two `DM` objects. 131047c6ae99SBarry Smith 131120f4b53cSBarry Smith Collective 131247c6ae99SBarry Smith 1313d8d19677SJose E. Roman Input Parameters: 1314bb7acecfSBarry Smith + dac - the `DM` object 1315bb7acecfSBarry Smith - daf - the second, finer `DM` object 131647c6ae99SBarry Smith 131747c6ae99SBarry Smith Output Parameter: 13186dbf9973SLawrence Mitchell . mat - the injection 131947c6ae99SBarry Smith 132047c6ae99SBarry Smith Level: developer 132147c6ae99SBarry Smith 1322a4e35b19SJacob Faibussowitsch Notes: 1323a4e35b19SJacob Faibussowitsch This is an operator that applied to a vector obtained with `DMCreateGlobalVector()` on the 1324a4e35b19SJacob Faibussowitsch fine grid maps the values to a vector on the vector on the coarse `DM` by simply selecting 1325a4e35b19SJacob Faibussowitsch the values on the coarse grid points. This compares to the operator obtained by 1326a4e35b19SJacob Faibussowitsch `DMCreateRestriction()` or the transpose of the operator obtained by 1327a4e35b19SJacob Faibussowitsch `DMCreateInterpolation()` that uses a "local weighted average" of the values around the 1328a4e35b19SJacob Faibussowitsch coarse grid point as the coarse grid value. 1329a4e35b19SJacob Faibussowitsch 1330bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1331bb7acecfSBarry Smith `DMCoarsen()`. The coordinates set into the `DMDA` are completely ignored in computing the injection. 133285afcc9aSBarry Smith 13331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateInterpolation()`, 1334bb7acecfSBarry Smith `DMCreateRestriction()`, `MatRestrict()`, `MatInterpolate()` 133547c6ae99SBarry Smith @*/ 1336d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInjection(DM dac, DM daf, Mat *mat) 1337d71ae5a4SJacob Faibussowitsch { 133847c6ae99SBarry Smith PetscFunctionBegin; 1339a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dac, DM_CLASSID, 1); 1340a5bc1bf3SBarry Smith PetscValidHeaderSpecific(daf, DM_CLASSID, 2); 13414f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13429566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInjection, dac, daf, 0, 0)); 1343dbbe0bcdSBarry Smith PetscUseTypeMethod(dac, createinjection, daf, mat); 13449566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInjection, dac, daf, 0, 0)); 13453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 134647c6ae99SBarry Smith } 134747c6ae99SBarry Smith 1348b412c318SBarry Smith /*@ 1349bb7acecfSBarry Smith DMCreateMassMatrix - Gets the mass matrix between two `DM` objects, M_ij = \int \phi_i \psi_j where the \phi are Galerkin basis functions for a 1350bb7acecfSBarry Smith a Galerkin finite element model on the `DM` 1351bd041c0cSMatthew G. Knepley 135220f4b53cSBarry Smith Collective 1353bd041c0cSMatthew G. Knepley 1354d8d19677SJose E. Roman Input Parameters: 1355bb7acecfSBarry Smith + dmc - the target `DM` object 1356bb7acecfSBarry Smith - dmf - the source `DM` object 1357bd041c0cSMatthew G. Knepley 1358bd041c0cSMatthew G. Knepley Output Parameter: 1359b4937a87SMatthew G. Knepley . mat - the mass matrix 1360bd041c0cSMatthew G. Knepley 1361bd041c0cSMatthew G. Knepley Level: developer 1362bd041c0cSMatthew G. Knepley 1363bb7acecfSBarry Smith Notes: 1364bb7acecfSBarry Smith For `DMPLEX` the finite element model for the `DM` must have been already provided. 1365bb7acecfSBarry Smith 136620f4b53cSBarry Smith if `dmc` is `dmf` then x^t M x is an approximation to the L2 norm of the vector x which is obtained by `DMCreateGlobalVector()` 1367bb7acecfSBarry Smith 136842747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrixLumped()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1369bd041c0cSMatthew G. Knepley @*/ 1370d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrix(DM dmc, DM dmf, Mat *mat) 1371d71ae5a4SJacob Faibussowitsch { 1372bd041c0cSMatthew G. Knepley PetscFunctionBegin; 1373b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1374b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 13754f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13765b8ffe73SMark Adams PetscCall(PetscLogEventBegin(DM_CreateMassMatrix, 0, 0, 0, 0)); 1377dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createmassmatrix, dmf, mat); 13785b8ffe73SMark Adams PetscCall(PetscLogEventEnd(DM_CreateMassMatrix, 0, 0, 0, 0)); 13793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1380b4937a87SMatthew G. Knepley } 1381b4937a87SMatthew G. Knepley 1382b4937a87SMatthew G. Knepley /*@ 1383bb7acecfSBarry Smith DMCreateMassMatrixLumped - Gets the lumped mass matrix for a given `DM` 1384b4937a87SMatthew G. Knepley 138520f4b53cSBarry Smith Collective 1386b4937a87SMatthew G. Knepley 1387b4937a87SMatthew G. Knepley Input Parameter: 1388bb7acecfSBarry Smith . dm - the `DM` object 1389b4937a87SMatthew G. Knepley 1390b4937a87SMatthew G. Knepley Output Parameter: 1391bb7acecfSBarry Smith . lm - the lumped mass matrix, which is a diagonal matrix, represented as a vector 1392b4937a87SMatthew G. Knepley 1393b4937a87SMatthew G. Knepley Level: developer 1394b4937a87SMatthew G. Knepley 1395bb7acecfSBarry Smith Note: 1396bb7acecfSBarry Smith See `DMCreateMassMatrix()` for how to create the non-lumped version of the mass matrix. 1397bb7acecfSBarry Smith 139860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrix()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1399b4937a87SMatthew G. Knepley @*/ 1400d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrixLumped(DM dm, Vec *lm) 1401d71ae5a4SJacob Faibussowitsch { 1402b4937a87SMatthew G. Knepley PetscFunctionBegin; 1403b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14044f572ea9SToby Isaac PetscAssertPointer(lm, 2); 1405dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createmassmatrixlumped, lm); 14063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1407bd041c0cSMatthew G. Knepley } 1408bd041c0cSMatthew G. Knepley 1409bd041c0cSMatthew G. Knepley /*@ 1410bb7acecfSBarry Smith DMCreateColoring - Gets coloring of a graph associated with the `DM`. Often the graph represents the operator matrix associated with the discretization 1411bb7acecfSBarry Smith of a PDE on the `DM`. 141247c6ae99SBarry Smith 141320f4b53cSBarry Smith Collective 141447c6ae99SBarry Smith 1415d8d19677SJose E. Roman Input Parameters: 1416bb7acecfSBarry Smith + dm - the `DM` object 1417bb7acecfSBarry Smith - ctype - `IS_COLORING_LOCAL` or `IS_COLORING_GLOBAL` 141847c6ae99SBarry Smith 141947c6ae99SBarry Smith Output Parameter: 142047c6ae99SBarry Smith . coloring - the coloring 142147c6ae99SBarry Smith 14221bf8429eSBarry Smith Level: developer 14231bf8429eSBarry Smith 1424ec5066bdSBarry Smith Notes: 1425bb7acecfSBarry Smith Coloring of matrices can also be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 1426bb7acecfSBarry Smith matrix comes from (what this function provides). In general using the mesh produces a more optimal coloring (fewer colors). 1427ec5066bdSBarry Smith 1428bb7acecfSBarry Smith This produces a coloring with the distance of 2, see `MatSetColoringDistance()` which can be used for efficiently computing Jacobians with `MatFDColoringCreate()` 14291bf8429eSBarry Smith For `DMDA` in three dimensions with periodic boundary conditions the number of grid points in each dimension must be divisible by 2*stencil_width + 1, 14301bf8429eSBarry Smith otherwise an error will be generated. 1431ec5066bdSBarry Smith 14321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISColoring`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatType()`, `MatColoring`, `MatFDColoringCreate()` 1433aab9d709SJed Brown @*/ 1434d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateColoring(DM dm, ISColoringType ctype, ISColoring *coloring) 1435d71ae5a4SJacob Faibussowitsch { 143647c6ae99SBarry Smith PetscFunctionBegin; 1437171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14384f572ea9SToby Isaac PetscAssertPointer(coloring, 3); 1439dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getcoloring, ctype, coloring); 14403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 144147c6ae99SBarry Smith } 144247c6ae99SBarry Smith 1443b412c318SBarry Smith /*@ 1444bb7acecfSBarry Smith DMCreateMatrix - Gets an empty matrix for a `DM` that is most commonly used to store the Jacobian of a discrete PDE operator. 144547c6ae99SBarry Smith 144620f4b53cSBarry Smith Collective 144747c6ae99SBarry Smith 144847c6ae99SBarry Smith Input Parameter: 1449bb7acecfSBarry Smith . dm - the `DM` object 145047c6ae99SBarry Smith 145147c6ae99SBarry Smith Output Parameter: 145247c6ae99SBarry Smith . mat - the empty Jacobian 145347c6ae99SBarry Smith 145420f4b53cSBarry Smith Options Database Key: 1455bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 1456f27dd7c6SMatthew G. Knepley 145720f4b53cSBarry Smith Level: beginner 145820f4b53cSBarry Smith 145995452b02SPatrick Sanan Notes: 146095452b02SPatrick Sanan This properly preallocates the number of nonzeros in the sparse matrix so you 146194013140SBarry Smith do not need to do it yourself. 146294013140SBarry Smith 146394013140SBarry Smith By default it also sets the nonzero structure and puts in the zero entries. To prevent setting 1464bb7acecfSBarry Smith the nonzero pattern call `DMSetMatrixPreallocateOnly()` 146594013140SBarry Smith 1466bb7acecfSBarry Smith For `DMDA`, when you call `MatView()` on this matrix it is displayed using the global natural ordering, NOT in the ordering used 146794013140SBarry Smith internally by PETSc. 146894013140SBarry Smith 1469bb7acecfSBarry Smith For `DMDA`, in general it is easiest to use `MatSetValuesStencil()` or `MatSetValuesLocal()` to put values into the matrix because 1470bb7acecfSBarry Smith `MatSetValues()` requires the indices for the global numbering for the `DMDA` which is complic`ated to compute 147194013140SBarry Smith 14721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMSetMatType()`, `DMCreateMassMatrix()` 1473aab9d709SJed Brown @*/ 1474d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMatrix(DM dm, Mat *mat) 1475d71ae5a4SJacob Faibussowitsch { 147647c6ae99SBarry Smith PetscFunctionBegin; 1477171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14784f572ea9SToby Isaac PetscAssertPointer(mat, 2); 14799566063dSJacob Faibussowitsch PetscCall(MatInitializePackage()); 14809566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateMatrix, 0, 0, 0, 0)); 1481dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, creatematrix, mat); 148276bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1483c6b011d8SStefano Zampini DM mdm; 1484c6b011d8SStefano Zampini 14859566063dSJacob Faibussowitsch PetscCall(MatGetDM(*mat, &mdm)); 14867a8be351SBarry Smith PetscCheck(mdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the matrix", ((PetscObject)dm)->type_name); 1487c6b011d8SStefano Zampini } 1488e571a35bSMatthew G. Knepley /* Handle nullspace and near nullspace */ 1489e5e52638SMatthew G. Knepley if (dm->Nf) { 1490e571a35bSMatthew G. Knepley MatNullSpace nullSpace; 1491649ef022SMatthew Knepley PetscInt Nf, f; 1492e571a35bSMatthew G. Knepley 14939566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 1494649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1495649ef022SMatthew Knepley if (dm->nullspaceConstructors[f]) { 14969566063dSJacob Faibussowitsch PetscCall((*dm->nullspaceConstructors[f])(dm, f, f, &nullSpace)); 14979566063dSJacob Faibussowitsch PetscCall(MatSetNullSpace(*mat, nullSpace)); 14989566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1499649ef022SMatthew Knepley break; 1500e571a35bSMatthew G. Knepley } 1501649ef022SMatthew Knepley } 1502649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1503649ef022SMatthew Knepley if (dm->nearnullspaceConstructors[f]) { 15049566063dSJacob Faibussowitsch PetscCall((*dm->nearnullspaceConstructors[f])(dm, f, f, &nullSpace)); 15059566063dSJacob Faibussowitsch PetscCall(MatSetNearNullSpace(*mat, nullSpace)); 15069566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1507e571a35bSMatthew G. Knepley } 1508e571a35bSMatthew G. Knepley } 1509e571a35bSMatthew G. Knepley } 15109566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateMatrix, 0, 0, 0, 0)); 15113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 151247c6ae99SBarry Smith } 151347c6ae99SBarry Smith 1514732e2eb9SMatthew G Knepley /*@ 1515a4e35b19SJacob Faibussowitsch DMSetMatrixPreallocateSkip - When `DMCreateMatrix()` is called the matrix sizes and 1516a4e35b19SJacob Faibussowitsch `ISLocalToGlobalMapping` will be properly set, but the data structures to store values in the 1517a4e35b19SJacob Faibussowitsch matrices will not be preallocated. 1518aa0f6e3cSJed Brown 151920f4b53cSBarry Smith Logically Collective 1520aa0f6e3cSJed Brown 1521aa0f6e3cSJed Brown Input Parameters: 1522bb7acecfSBarry Smith + dm - the `DM` 1523bb7acecfSBarry Smith - skip - `PETSC_TRUE` to skip preallocation 1524aa0f6e3cSJed Brown 1525aa0f6e3cSJed Brown Level: developer 1526aa0f6e3cSJed Brown 1527a4e35b19SJacob Faibussowitsch Notes: 1528a4e35b19SJacob Faibussowitsch This is most useful to reduce initialization costs when `MatSetPreallocationCOO()` and 1529a4e35b19SJacob Faibussowitsch `MatSetValuesCOO()` will be used. 1530a4e35b19SJacob Faibussowitsch 15311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateOnly()` 1532aa0f6e3cSJed Brown @*/ 1533d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateSkip(DM dm, PetscBool skip) 1534d71ae5a4SJacob Faibussowitsch { 1535aa0f6e3cSJed Brown PetscFunctionBegin; 1536aa0f6e3cSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1537aa0f6e3cSJed Brown dm->prealloc_skip = skip; 15383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1539aa0f6e3cSJed Brown } 1540aa0f6e3cSJed Brown 1541aa0f6e3cSJed Brown /*@ 1542bb7acecfSBarry Smith DMSetMatrixPreallocateOnly - When `DMCreateMatrix()` is called the matrix will be properly 1543732e2eb9SMatthew G Knepley preallocated but the nonzero structure and zero values will not be set. 1544732e2eb9SMatthew G Knepley 154520f4b53cSBarry Smith Logically Collective 1546732e2eb9SMatthew G Knepley 1547d8d19677SJose E. Roman Input Parameters: 1548bb7acecfSBarry Smith + dm - the `DM` 1549bb7acecfSBarry Smith - only - `PETSC_TRUE` if only want preallocation 1550732e2eb9SMatthew G Knepley 155120f4b53cSBarry Smith Options Database Key: 1552bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()`, `DMCreateMassMatrix()`, but do not fill it with zeros 1553f27dd7c6SMatthew G. Knepley 155420f4b53cSBarry Smith Level: developer 155520f4b53cSBarry Smith 15561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateSkip()` 1557732e2eb9SMatthew G Knepley @*/ 1558d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateOnly(DM dm, PetscBool only) 1559d71ae5a4SJacob Faibussowitsch { 1560732e2eb9SMatthew G Knepley PetscFunctionBegin; 1561732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1562732e2eb9SMatthew G Knepley dm->prealloc_only = only; 15633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1564732e2eb9SMatthew G Knepley } 1565732e2eb9SMatthew G Knepley 1566b06ff27eSHong Zhang /*@ 1567bb7acecfSBarry Smith DMSetMatrixStructureOnly - When `DMCreateMatrix()` is called, the matrix structure will be created 1568bb7acecfSBarry Smith but the array for numerical values will not be allocated. 1569b06ff27eSHong Zhang 157020f4b53cSBarry Smith Logically Collective 1571b06ff27eSHong Zhang 1572d8d19677SJose E. Roman Input Parameters: 1573bb7acecfSBarry Smith + dm - the `DM` 1574da81f932SPierre Jolivet - only - `PETSC_TRUE` if you only want matrix structure 1575b06ff27eSHong Zhang 1576b06ff27eSHong Zhang Level: developer 1577bb7acecfSBarry Smith 15781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMSetMatrixPreallocateSkip()` 1579b06ff27eSHong Zhang @*/ 1580d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixStructureOnly(DM dm, PetscBool only) 1581d71ae5a4SJacob Faibussowitsch { 1582b06ff27eSHong Zhang PetscFunctionBegin; 1583b06ff27eSHong Zhang PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1584b06ff27eSHong Zhang dm->structure_only = only; 15853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1586b06ff27eSHong Zhang } 1587b06ff27eSHong Zhang 1588863027abSJed Brown /*@ 1589863027abSJed Brown DMSetBlockingType - set the blocking granularity to be used for variable block size `DMCreateMatrix()` is called 1590863027abSJed Brown 159120f4b53cSBarry Smith Logically Collective 1592863027abSJed Brown 1593863027abSJed Brown Input Parameters: 1594863027abSJed Brown + dm - the `DM` 1595863027abSJed Brown - btype - block by topological point or field node 1596863027abSJed Brown 159720f4b53cSBarry Smith Options Database Key: 15980e762ea3SJed Brown . -dm_blocking_type [topological_point, field_node] - use topological point blocking or field node blocking 1599863027abSJed Brown 160020f4b53cSBarry Smith Level: advanced 160120f4b53cSBarry Smith 16021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()` 1603863027abSJed Brown @*/ 1604863027abSJed Brown PetscErrorCode DMSetBlockingType(DM dm, DMBlockingType btype) 1605863027abSJed Brown { 1606863027abSJed Brown PetscFunctionBegin; 1607863027abSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1608863027abSJed Brown dm->blocking_type = btype; 16093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1610863027abSJed Brown } 1611863027abSJed Brown 1612863027abSJed Brown /*@ 1613863027abSJed Brown DMGetBlockingType - get the blocking granularity to be used for variable block size `DMCreateMatrix()` is called 1614863027abSJed Brown 1615863027abSJed Brown Not Collective 1616863027abSJed Brown 16172fe279fdSBarry Smith Input Parameter: 1618863027abSJed Brown . dm - the `DM` 1619863027abSJed Brown 16202fe279fdSBarry Smith Output Parameter: 1621863027abSJed Brown . btype - block by topological point or field node 1622863027abSJed Brown 1623863027abSJed Brown Level: advanced 1624863027abSJed Brown 16251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()` 1626863027abSJed Brown @*/ 1627863027abSJed Brown PetscErrorCode DMGetBlockingType(DM dm, DMBlockingType *btype) 1628863027abSJed Brown { 1629863027abSJed Brown PetscFunctionBegin; 1630863027abSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16314f572ea9SToby Isaac PetscAssertPointer(btype, 2); 1632863027abSJed Brown *btype = dm->blocking_type; 16333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1634863027abSJed Brown } 1635863027abSJed Brown 1636a89ea682SMatthew G Knepley /*@C 1637bb7acecfSBarry Smith DMGetWorkArray - Gets a work array guaranteed to be at least the input size, restore with `DMRestoreWorkArray()` 1638a89ea682SMatthew G Knepley 1639a89ea682SMatthew G Knepley Not Collective 1640a89ea682SMatthew G Knepley 1641a89ea682SMatthew G Knepley Input Parameters: 1642bb7acecfSBarry Smith + dm - the `DM` object 1643a5b23f4aSJose E. Roman . count - The minimum size 164420f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, or `MPIU_INT`) 1645a89ea682SMatthew G Knepley 1646a89ea682SMatthew G Knepley Output Parameter: 164760225df5SJacob Faibussowitsch . mem - the work array 1648a89ea682SMatthew G Knepley 1649a89ea682SMatthew G Knepley Level: developer 1650a89ea682SMatthew G Knepley 1651bb7acecfSBarry Smith Note: 1652da81f932SPierre Jolivet A `DM` may stash the array between instantiations so using this routine may be more efficient than calling `PetscMalloc()` 1653bb7acecfSBarry Smith 1654bb7acecfSBarry Smith The array may contain nonzero values 1655bb7acecfSBarry Smith 16561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMRestoreWorkArray()`, `PetscMalloc()` 1657a89ea682SMatthew G Knepley @*/ 1658d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1659d71ae5a4SJacob Faibussowitsch { 1660aa1993deSMatthew G Knepley DMWorkLink link; 166169291d52SBarry Smith PetscMPIInt dsize; 1662a89ea682SMatthew G Knepley 1663a89ea682SMatthew G Knepley PetscFunctionBegin; 1664a89ea682SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16654f572ea9SToby Isaac PetscAssertPointer(mem, 4); 1666442f3b32SStefano Zampini if (!count) { 1667442f3b32SStefano Zampini *(void **)mem = NULL; 1668442f3b32SStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 1669442f3b32SStefano Zampini } 1670aa1993deSMatthew G Knepley if (dm->workin) { 1671aa1993deSMatthew G Knepley link = dm->workin; 1672aa1993deSMatthew G Knepley dm->workin = dm->workin->next; 1673aa1993deSMatthew G Knepley } else { 16744dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&link)); 1675a89ea682SMatthew G Knepley } 1676b77fa653SStefano Zampini /* Avoid MPI_Type_size for most used datatypes 1677b77fa653SStefano Zampini Get size directly */ 1678b77fa653SStefano Zampini if (dtype == MPIU_INT) dsize = sizeof(PetscInt); 1679b77fa653SStefano Zampini else if (dtype == MPIU_REAL) dsize = sizeof(PetscReal); 1680b77fa653SStefano Zampini #if defined(PETSC_USE_64BIT_INDICES) 1681b77fa653SStefano Zampini else if (dtype == MPI_INT) dsize = sizeof(int); 1682b77fa653SStefano Zampini #endif 1683b77fa653SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1684b77fa653SStefano Zampini else if (dtype == MPIU_SCALAR) dsize = sizeof(PetscScalar); 1685b77fa653SStefano Zampini #endif 1686b77fa653SStefano Zampini else PetscCallMPI(MPI_Type_size(dtype, &dsize)); 1687b77fa653SStefano Zampini 16885056fcd2SBarry Smith if (((size_t)dsize * count) > link->bytes) { 16899566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 16909566063dSJacob Faibussowitsch PetscCall(PetscMalloc(dsize * count, &link->mem)); 1691854ce69bSBarry Smith link->bytes = dsize * count; 1692aa1993deSMatthew G Knepley } 1693aa1993deSMatthew G Knepley link->next = dm->workout; 1694aa1993deSMatthew G Knepley dm->workout = link; 1695cea3dcb8SSatish Balay #if defined(__MEMCHECK_H) && (defined(PLAT_amd64_linux) || defined(PLAT_x86_linux) || defined(PLAT_amd64_darwin)) 169600d952a4SJed Brown VALGRIND_MAKE_MEM_NOACCESS((char *)link->mem + (size_t)dsize * count, link->bytes - (size_t)dsize * count); 169700d952a4SJed Brown VALGRIND_MAKE_MEM_UNDEFINED(link->mem, (size_t)dsize * count); 169800d952a4SJed Brown #endif 1699aa1993deSMatthew G Knepley *(void **)mem = link->mem; 17003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1701a89ea682SMatthew G Knepley } 1702a89ea682SMatthew G Knepley 1703aa1993deSMatthew G Knepley /*@C 1704bb7acecfSBarry Smith DMRestoreWorkArray - Restores a work array obtained with `DMCreateWorkArray()` 1705aa1993deSMatthew G Knepley 1706aa1993deSMatthew G Knepley Not Collective 1707aa1993deSMatthew G Knepley 1708aa1993deSMatthew G Knepley Input Parameters: 1709bb7acecfSBarry Smith + dm - the `DM` object 1710a5b23f4aSJose E. Roman . count - The minimum size 171120f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, `MPIU_INT` 1712aa1993deSMatthew G Knepley 1713aa1993deSMatthew G Knepley Output Parameter: 171460225df5SJacob Faibussowitsch . mem - the work array 1715aa1993deSMatthew G Knepley 1716aa1993deSMatthew G Knepley Level: developer 1717aa1993deSMatthew G Knepley 171860225df5SJacob Faibussowitsch Developer Notes: 1719bb7acecfSBarry Smith count and dtype are ignored, they are only needed for `DMGetWorkArray()` 1720147403d9SBarry Smith 17211cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMGetWorkArray()` 1722aa1993deSMatthew G Knepley @*/ 1723d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestoreWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1724d71ae5a4SJacob Faibussowitsch { 1725aa1993deSMatthew G Knepley DMWorkLink *p, link; 1726aa1993deSMatthew G Knepley 1727aa1993deSMatthew G Knepley PetscFunctionBegin; 1728aa1993deSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17294f572ea9SToby Isaac PetscAssertPointer(mem, 4); 1730a4e35b19SJacob Faibussowitsch (void)count; 1731a4e35b19SJacob Faibussowitsch (void)dtype; 1732442f3b32SStefano Zampini if (!*(void **)mem) PetscFunctionReturn(PETSC_SUCCESS); 1733aa1993deSMatthew G Knepley for (p = &dm->workout; (link = *p); p = &link->next) { 1734aa1993deSMatthew G Knepley if (link->mem == *(void **)mem) { 1735aa1993deSMatthew G Knepley *p = link->next; 1736aa1993deSMatthew G Knepley link->next = dm->workin; 1737aa1993deSMatthew G Knepley dm->workin = link; 17380298fd71SBarry Smith *(void **)mem = NULL; 17393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1740aa1993deSMatthew G Knepley } 1741aa1993deSMatthew G Knepley } 1742aa1993deSMatthew G Knepley SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Array was not checked out"); 1743aa1993deSMatthew G Knepley } 1744e7c4fc90SDmitry Karpeev 17458cda7954SMatthew G. Knepley /*@C 1746bb7acecfSBarry Smith DMSetNullSpaceConstructor - Provide a callback function which constructs the nullspace for a given field, defined with `DMAddField()`, when function spaces 1747bb7acecfSBarry Smith are joined or split, such as in `DMCreateSubDM()` 17488cda7954SMatthew G. Knepley 174920f4b53cSBarry Smith Logically Collective; No Fortran Support 17508cda7954SMatthew G. Knepley 17518cda7954SMatthew G. Knepley Input Parameters: 1752bb7acecfSBarry Smith + dm - The `DM` 17538cda7954SMatthew G. Knepley . field - The field number for the nullspace 17548cda7954SMatthew G. Knepley - nullsp - A callback to create the nullspace 17558cda7954SMatthew G. Knepley 175620f4b53cSBarry Smith Calling sequence of `nullsp`: 1757bb7acecfSBarry Smith + dm - The present `DM` 1758bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1759147403d9SBarry Smith . field - The field number in dm 1760147403d9SBarry Smith - nullSpace - The nullspace for the given field 17618cda7954SMatthew G. Knepley 176249762cbcSSatish Balay Level: intermediate 176349762cbcSSatish Balay 17641cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1765147403d9SBarry Smith @*/ 1766a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1767d71ae5a4SJacob Faibussowitsch { 1768435a35e8SMatthew G Knepley PetscFunctionBegin; 1769435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17707a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1771435a35e8SMatthew G Knepley dm->nullspaceConstructors[field] = nullsp; 17723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1773435a35e8SMatthew G Knepley } 1774435a35e8SMatthew G Knepley 17758cda7954SMatthew G. Knepley /*@C 1776bb7acecfSBarry Smith DMGetNullSpaceConstructor - Return the callback function which constructs the nullspace for a given field, defined with `DMAddField()` 17778cda7954SMatthew G. Knepley 177820f4b53cSBarry Smith Not Collective; No Fortran Support 17798cda7954SMatthew G. Knepley 17808cda7954SMatthew G. Knepley Input Parameters: 1781bb7acecfSBarry Smith + dm - The `DM` 17828cda7954SMatthew G. Knepley - field - The field number for the nullspace 17838cda7954SMatthew G. Knepley 17848cda7954SMatthew G. Knepley Output Parameter: 17858cda7954SMatthew G. Knepley . nullsp - A callback to create the nullspace 17868cda7954SMatthew G. Knepley 178720f4b53cSBarry Smith Calling sequence of `nullsp`: 1788147403d9SBarry Smith + dm - The present DM 1789147403d9SBarry Smith . origField - The field number given above, in the original DM 1790147403d9SBarry Smith . field - The field number in dm 1791147403d9SBarry Smith - nullSpace - The nullspace for the given field 17928cda7954SMatthew G. Knepley 179349762cbcSSatish Balay Level: intermediate 179449762cbcSSatish Balay 17951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1796147403d9SBarry Smith @*/ 1797a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1798d71ae5a4SJacob Faibussowitsch { 17990a50eb56SMatthew G. Knepley PetscFunctionBegin; 18000a50eb56SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18014f572ea9SToby Isaac PetscAssertPointer(nullsp, 3); 18027a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 18030a50eb56SMatthew G. Knepley *nullsp = dm->nullspaceConstructors[field]; 18043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18050a50eb56SMatthew G. Knepley } 18060a50eb56SMatthew G. Knepley 18078cda7954SMatthew G. Knepley /*@C 1808bb7acecfSBarry Smith DMSetNearNullSpaceConstructor - Provide a callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 18098cda7954SMatthew G. Knepley 181020f4b53cSBarry Smith Logically Collective; No Fortran Support 18118cda7954SMatthew G. Knepley 18128cda7954SMatthew G. Knepley Input Parameters: 1813bb7acecfSBarry Smith + dm - The `DM` 18148cda7954SMatthew G. Knepley . field - The field number for the nullspace 18158cda7954SMatthew G. Knepley - nullsp - A callback to create the near-nullspace 18168cda7954SMatthew G. Knepley 181720f4b53cSBarry Smith Calling sequence of `nullsp`: 1818bb7acecfSBarry Smith + dm - The present `DM` 1819bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1820147403d9SBarry Smith . field - The field number in dm 1821147403d9SBarry Smith - nullSpace - The nullspace for the given field 18228cda7954SMatthew G. Knepley 182349762cbcSSatish Balay Level: intermediate 182449762cbcSSatish Balay 18251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`, 1826bb7acecfSBarry Smith `MatNullSpace` 1827147403d9SBarry Smith @*/ 1828a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1829d71ae5a4SJacob Faibussowitsch { 1830f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1831f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18327a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1833f9d4088aSMatthew G. Knepley dm->nearnullspaceConstructors[field] = nullsp; 18343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1835f9d4088aSMatthew G. Knepley } 1836f9d4088aSMatthew G. Knepley 18378cda7954SMatthew G. Knepley /*@C 1838bb7acecfSBarry Smith DMGetNearNullSpaceConstructor - Return the callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 18398cda7954SMatthew G. Knepley 184020f4b53cSBarry Smith Not Collective; No Fortran Support 18418cda7954SMatthew G. Knepley 18428cda7954SMatthew G. Knepley Input Parameters: 1843bb7acecfSBarry Smith + dm - The `DM` 18448cda7954SMatthew G. Knepley - field - The field number for the nullspace 18458cda7954SMatthew G. Knepley 18468cda7954SMatthew G. Knepley Output Parameter: 18478cda7954SMatthew G. Knepley . nullsp - A callback to create the near-nullspace 18488cda7954SMatthew G. Knepley 184920f4b53cSBarry Smith Calling sequence of `nullsp`: 1850bb7acecfSBarry Smith + dm - The present `DM` 1851bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1852147403d9SBarry Smith . field - The field number in dm 1853147403d9SBarry Smith - nullSpace - The nullspace for the given field 18548cda7954SMatthew G. Knepley 185549762cbcSSatish Balay Level: intermediate 185649762cbcSSatish Balay 18571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, 1858bb7acecfSBarry Smith `MatNullSpace`, `DMCreateSuperDM()` 1859147403d9SBarry Smith @*/ 1860a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1861d71ae5a4SJacob Faibussowitsch { 1862f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1863f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18644f572ea9SToby Isaac PetscAssertPointer(nullsp, 3); 18657a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1866f9d4088aSMatthew G. Knepley *nullsp = dm->nearnullspaceConstructors[field]; 18673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1868f9d4088aSMatthew G. Knepley } 1869f9d4088aSMatthew G. Knepley 18704f3b5142SJed Brown /*@C 1871bb7acecfSBarry Smith DMCreateFieldIS - Creates a set of `IS` objects with the global indices of dofs for each field defined with `DMAddField()` 18724d343eeaSMatthew G Knepley 187320f4b53cSBarry Smith Not Collective; No Fortran Support 18744d343eeaSMatthew G Knepley 18754d343eeaSMatthew G Knepley Input Parameter: 1876bb7acecfSBarry Smith . dm - the `DM` object 18774d343eeaSMatthew G Knepley 18784d343eeaSMatthew G Knepley Output Parameters: 187920f4b53cSBarry Smith + numFields - The number of fields (or `NULL` if not requested) 188020f4b53cSBarry Smith . fieldNames - The number of each field (or `NULL` if not requested) 188120f4b53cSBarry Smith - fields - The global indices for each field (or `NULL` if not requested) 18824d343eeaSMatthew G Knepley 18834d343eeaSMatthew G Knepley Level: intermediate 18844d343eeaSMatthew G Knepley 1885bb7acecfSBarry Smith Note: 188621c9b008SJed Brown The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with 1887bb7acecfSBarry Smith `PetscFree()`, every entry of fields should be destroyed with `ISDestroy()`, and both arrays should be freed with 1888bb7acecfSBarry Smith `PetscFree()`. 188921c9b008SJed Brown 189060225df5SJacob Faibussowitsch Developer Notes: 1891bb7acecfSBarry Smith It is not clear why both this function and `DMCreateFieldDecomposition()` exist. Having two seems redundant and confusing. This function should 1892bb7acecfSBarry Smith likely be removed. 1893bb7acecfSBarry Smith 18941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1895bb7acecfSBarry Smith `DMCreateFieldDecomposition()` 18964d343eeaSMatthew G Knepley @*/ 1897d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldIS(DM dm, PetscInt *numFields, char ***fieldNames, IS **fields) 1898d71ae5a4SJacob Faibussowitsch { 189937d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 19004d343eeaSMatthew G Knepley 19014d343eeaSMatthew G Knepley PetscFunctionBegin; 19024d343eeaSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 190369ca1f37SDmitry Karpeev if (numFields) { 19044f572ea9SToby Isaac PetscAssertPointer(numFields, 2); 190569ca1f37SDmitry Karpeev *numFields = 0; 190669ca1f37SDmitry Karpeev } 190737d0c07bSMatthew G Knepley if (fieldNames) { 19084f572ea9SToby Isaac PetscAssertPointer(fieldNames, 3); 19090298fd71SBarry Smith *fieldNames = NULL; 191069ca1f37SDmitry Karpeev } 191169ca1f37SDmitry Karpeev if (fields) { 19124f572ea9SToby Isaac PetscAssertPointer(fields, 4); 19130298fd71SBarry Smith *fields = NULL; 191469ca1f37SDmitry Karpeev } 19159566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 191637d0c07bSMatthew G Knepley if (section) { 19173a544194SStefano Zampini PetscInt *fieldSizes, *fieldNc, **fieldIndices; 191837d0c07bSMatthew G Knepley PetscInt nF, f, pStart, pEnd, p; 191937d0c07bSMatthew G Knepley 19209566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 19219566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &nF)); 19229566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nF, &fieldSizes, nF, &fieldNc, nF, &fieldIndices)); 19239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd)); 192437d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 192537d0c07bSMatthew G Knepley fieldSizes[f] = 0; 19269566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &fieldNc[f])); 192737d0c07bSMatthew G Knepley } 192837d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 192937d0c07bSMatthew G Knepley PetscInt gdof; 193037d0c07bSMatthew G Knepley 19319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 193237d0c07bSMatthew G Knepley if (gdof > 0) { 193337d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19343a544194SStefano Zampini PetscInt fdof, fcdof, fpdof; 193537d0c07bSMatthew G Knepley 19369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19379566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 19383a544194SStefano Zampini fpdof = fdof - fcdof; 19393a544194SStefano Zampini if (fpdof && fpdof != fieldNc[f]) { 19403a544194SStefano Zampini /* Layout does not admit a pointwise block size */ 19413a544194SStefano Zampini fieldNc[f] = 1; 19423a544194SStefano Zampini } 19433a544194SStefano Zampini fieldSizes[f] += fpdof; 194437d0c07bSMatthew G Knepley } 194537d0c07bSMatthew G Knepley } 194637d0c07bSMatthew G Knepley } 194737d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(fieldSizes[f], &fieldIndices[f])); 194937d0c07bSMatthew G Knepley fieldSizes[f] = 0; 195037d0c07bSMatthew G Knepley } 195137d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 195237d0c07bSMatthew G Knepley PetscInt gdof, goff; 195337d0c07bSMatthew G Knepley 19549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 195537d0c07bSMatthew G Knepley if (gdof > 0) { 19569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &goff)); 195737d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 195837d0c07bSMatthew G Knepley PetscInt fdof, fcdof, fc; 195937d0c07bSMatthew G Knepley 19609566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19619566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 1962ad540459SPierre Jolivet for (fc = 0; fc < fdof - fcdof; ++fc, ++fieldSizes[f]) fieldIndices[f][fieldSizes[f]] = goff++; 196337d0c07bSMatthew G Knepley } 196437d0c07bSMatthew G Knepley } 196537d0c07bSMatthew G Knepley } 19668865f1eaSKarl Rupp if (numFields) *numFields = nF; 196737d0c07bSMatthew G Knepley if (fieldNames) { 19689566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fieldNames)); 196937d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 197037d0c07bSMatthew G Knepley const char *fieldName; 197137d0c07bSMatthew G Knepley 19729566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 19739566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(fieldName, (char **)&(*fieldNames)[f])); 197437d0c07bSMatthew G Knepley } 197537d0c07bSMatthew G Knepley } 197637d0c07bSMatthew G Knepley if (fields) { 19779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fields)); 197837d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19793a544194SStefano Zampini PetscInt bs, in[2], out[2]; 19803a544194SStefano Zampini 19819566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), fieldSizes[f], fieldIndices[f], PETSC_OWN_POINTER, &(*fields)[f])); 19823a544194SStefano Zampini in[0] = -fieldNc[f]; 19833a544194SStefano Zampini in[1] = fieldNc[f]; 19841c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 19853a544194SStefano Zampini bs = (-out[0] == out[1]) ? out[1] : 1; 19869566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize((*fields)[f], bs)); 198737d0c07bSMatthew G Knepley } 198837d0c07bSMatthew G Knepley } 19899566063dSJacob Faibussowitsch PetscCall(PetscFree3(fieldSizes, fieldNc, fieldIndices)); 1990dbbe0bcdSBarry Smith } else PetscTryTypeMethod(dm, createfieldis, numFields, fieldNames, fields); 19913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19924d343eeaSMatthew G Knepley } 19934d343eeaSMatthew G Knepley 199416621825SDmitry Karpeev /*@C 1995bb7acecfSBarry Smith DMCreateFieldDecomposition - Returns a list of `IS` objects defining a decomposition of a problem into subproblems 1996a4e35b19SJacob Faibussowitsch corresponding to different fields. 1997e7c4fc90SDmitry Karpeev 199820f4b53cSBarry Smith Not Collective; No Fortran Support 1999e7c4fc90SDmitry Karpeev 2000e7c4fc90SDmitry Karpeev Input Parameter: 2001bb7acecfSBarry Smith . dm - the `DM` object 2002e7c4fc90SDmitry Karpeev 2003e7c4fc90SDmitry Karpeev Output Parameters: 200420f4b53cSBarry Smith + len - The number of fields (or `NULL` if not requested) 200520f4b53cSBarry Smith . namelist - The name for each field (or `NULL` if not requested) 200620f4b53cSBarry Smith . islist - The global indices for each field (or `NULL` if not requested) 200720f4b53cSBarry Smith - dmlist - The `DM`s for each field subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined) 2008e7c4fc90SDmitry Karpeev 2009e7c4fc90SDmitry Karpeev Level: intermediate 2010e7c4fc90SDmitry Karpeev 2011a4e35b19SJacob Faibussowitsch Notes: 2012a4e35b19SJacob Faibussowitsch Each `IS` contains the global indices of the dofs of the corresponding field, defined by 2013a4e35b19SJacob Faibussowitsch `DMAddField()`. The optional list of `DM`s define the `DM` for each subproblem. 2014a4e35b19SJacob Faibussowitsch 2015a4e35b19SJacob Faibussowitsch The same as `DMCreateFieldIS()` but also returns a `DM` for each field. 2016a4e35b19SJacob Faibussowitsch 2017e7c4fc90SDmitry Karpeev The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with 2018bb7acecfSBarry Smith `PetscFree()`, every entry of is should be destroyed with `ISDestroy()`, every entry of dm should be destroyed with `DMDestroy()`, 2019bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 2020e7c4fc90SDmitry Karpeev 202160225df5SJacob Faibussowitsch Developer Notes: 2022bb7acecfSBarry Smith It is not clear why this function and `DMCreateFieldIS()` exist. Having two seems redundant and confusing. 2023bb7acecfSBarry Smith 202460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMCreateFieldIS()`, `DMCreateSubDM()`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 2025e7c4fc90SDmitry Karpeev @*/ 2026d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldDecomposition(DM dm, PetscInt *len, char ***namelist, IS **islist, DM **dmlist) 2027d71ae5a4SJacob Faibussowitsch { 2028e7c4fc90SDmitry Karpeev PetscFunctionBegin; 2029e7c4fc90SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 20308865f1eaSKarl Rupp if (len) { 20314f572ea9SToby Isaac PetscAssertPointer(len, 2); 20328865f1eaSKarl Rupp *len = 0; 20338865f1eaSKarl Rupp } 20348865f1eaSKarl Rupp if (namelist) { 20354f572ea9SToby Isaac PetscAssertPointer(namelist, 3); 2036ea78f98cSLisandro Dalcin *namelist = NULL; 20378865f1eaSKarl Rupp } 20388865f1eaSKarl Rupp if (islist) { 20394f572ea9SToby Isaac PetscAssertPointer(islist, 4); 2040ea78f98cSLisandro Dalcin *islist = NULL; 20418865f1eaSKarl Rupp } 20428865f1eaSKarl Rupp if (dmlist) { 20434f572ea9SToby Isaac PetscAssertPointer(dmlist, 5); 2044ea78f98cSLisandro Dalcin *dmlist = NULL; 20458865f1eaSKarl Rupp } 2046f3f0edfdSDmitry Karpeev /* 2047f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2048f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2049f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2050f3f0edfdSDmitry Karpeev */ 20517a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 205216621825SDmitry Karpeev if (!dm->ops->createfielddecomposition) { 2053435a35e8SMatthew G Knepley PetscSection section; 2054435a35e8SMatthew G Knepley PetscInt numFields, f; 2055435a35e8SMatthew G Knepley 20569566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 20579566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(section, &numFields)); 2058435a35e8SMatthew G Knepley if (section && numFields && dm->ops->createsubdm) { 2059f25d98f1SMatthew G. Knepley if (len) *len = numFields; 20609566063dSJacob Faibussowitsch if (namelist) PetscCall(PetscMalloc1(numFields, namelist)); 20619566063dSJacob Faibussowitsch if (islist) PetscCall(PetscMalloc1(numFields, islist)); 20629566063dSJacob Faibussowitsch if (dmlist) PetscCall(PetscMalloc1(numFields, dmlist)); 2063435a35e8SMatthew G Knepley for (f = 0; f < numFields; ++f) { 2064435a35e8SMatthew G Knepley const char *fieldName; 2065435a35e8SMatthew G Knepley 20669566063dSJacob Faibussowitsch PetscCall(DMCreateSubDM(dm, 1, &f, islist ? &(*islist)[f] : NULL, dmlist ? &(*dmlist)[f] : NULL)); 206703dc3394SMatthew G. Knepley if (namelist) { 20689566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 20699566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(fieldName, (char **)&(*namelist)[f])); 2070435a35e8SMatthew G Knepley } 207103dc3394SMatthew G. Knepley } 2072435a35e8SMatthew G Knepley } else { 20739566063dSJacob Faibussowitsch PetscCall(DMCreateFieldIS(dm, len, namelist, islist)); 2074e7c4fc90SDmitry Karpeev /* By default there are no DMs associated with subproblems. */ 20750298fd71SBarry Smith if (dmlist) *dmlist = NULL; 2076e7c4fc90SDmitry Karpeev } 2077dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, createfielddecomposition, len, namelist, islist, dmlist); 20783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 207916621825SDmitry Karpeev } 208016621825SDmitry Karpeev 2081412a4547SAlexis Marboeuf /*@C 208220f4b53cSBarry Smith DMCreateSubDM - Returns an `IS` and `DM` encapsulating a subproblem defined by the fields passed in. 208320f4b53cSBarry Smith The fields are defined by `DMCreateFieldIS()`. 2084435a35e8SMatthew G Knepley 2085435a35e8SMatthew G Knepley Not collective 2086435a35e8SMatthew G Knepley 2087435a35e8SMatthew G Knepley Input Parameters: 2088bb7acecfSBarry Smith + dm - The `DM` object 2089bb7acecfSBarry Smith . numFields - The number of fields to select 20902adcc780SMatthew G. Knepley - fields - The field numbers of the selected fields 2091435a35e8SMatthew G Knepley 2092435a35e8SMatthew G Knepley Output Parameters: 2093bb7acecfSBarry Smith + is - The global indices for all the degrees of freedom in the new sub `DM` 2094bb7acecfSBarry Smith - subdm - The `DM` for the subproblem 2095435a35e8SMatthew G Knepley 209620f4b53cSBarry Smith Level: intermediate 209720f4b53cSBarry Smith 2098bb7acecfSBarry Smith Note: 2099bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 21005d3b26e6SMatthew G. Knepley 210160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateFieldIS()`, `DMCreateFieldDecomposition()`, `DMAddField()`, `DMCreateSuperDM()`, `IS`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 2102435a35e8SMatthew G Knepley @*/ 2103d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSubDM(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm) 2104d71ae5a4SJacob Faibussowitsch { 2105435a35e8SMatthew G Knepley PetscFunctionBegin; 2106435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 21074f572ea9SToby Isaac PetscAssertPointer(fields, 3); 21084f572ea9SToby Isaac if (is) PetscAssertPointer(is, 4); 21094f572ea9SToby Isaac if (subdm) PetscAssertPointer(subdm, 5); 2110dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createsubdm, numFields, fields, is, subdm); 21113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2112435a35e8SMatthew G Knepley } 2113435a35e8SMatthew G Knepley 21142adcc780SMatthew G. Knepley /*@C 2115bb7acecfSBarry Smith DMCreateSuperDM - Returns an arrays of `IS` and `DM` encapsulating a superproblem defined by multiple `DM`s passed in. 21162adcc780SMatthew G. Knepley 21172adcc780SMatthew G. Knepley Not collective 21182adcc780SMatthew G. Knepley 2119d8d19677SJose E. Roman Input Parameters: 2120bb7acecfSBarry Smith + dms - The `DM` objects 2121bb7acecfSBarry Smith - n - The number of `DM`s 21222adcc780SMatthew G. Knepley 21232adcc780SMatthew G. Knepley Output Parameters: 2124bb7acecfSBarry Smith + is - The global indices for each of subproblem within the super `DM`, or NULL 2125bb7acecfSBarry Smith - superdm - The `DM` for the superproblem 21262adcc780SMatthew G. Knepley 212720f4b53cSBarry Smith Level: intermediate 212820f4b53cSBarry Smith 2129bb7acecfSBarry Smith Note: 2130bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 21315d3b26e6SMatthew G. Knepley 21321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateSubDM()`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 21332adcc780SMatthew G. Knepley @*/ 2134d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSuperDM(DM dms[], PetscInt n, IS **is, DM *superdm) 2135d71ae5a4SJacob Faibussowitsch { 21362adcc780SMatthew G. Knepley PetscInt i; 21372adcc780SMatthew G. Knepley 21382adcc780SMatthew G. Knepley PetscFunctionBegin; 21394f572ea9SToby Isaac PetscAssertPointer(dms, 1); 2140ad540459SPierre Jolivet for (i = 0; i < n; ++i) PetscValidHeaderSpecific(dms[i], DM_CLASSID, 1); 21414f572ea9SToby Isaac if (is) PetscAssertPointer(is, 3); 21424f572ea9SToby Isaac PetscAssertPointer(superdm, 4); 2143bb7acecfSBarry Smith PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of DMs must be nonnegative: %" PetscInt_FMT, n); 2144bb7acecfSBarry Smith if (n) { 2145b9d85ea2SLisandro Dalcin DM dm = dms[0]; 214600045ab3SPierre Jolivet PetscCheck(dm->ops->createsuperdm, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No method createsuperdm for DM of type %s", ((PetscObject)dm)->type_name); 2147dbbe0bcdSBarry Smith PetscCall((*dm->ops->createsuperdm)(dms, n, is, superdm)); 21482adcc780SMatthew G. Knepley } 21493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21502adcc780SMatthew G. Knepley } 21512adcc780SMatthew G. Knepley 215216621825SDmitry Karpeev /*@C 2153a4e35b19SJacob Faibussowitsch DMCreateDomainDecomposition - Returns lists of `IS` objects defining a decomposition of a 2154a4e35b19SJacob Faibussowitsch problem into subproblems corresponding to restrictions to pairs of nested subdomains. 215516621825SDmitry Karpeev 215620f4b53cSBarry Smith Not Collective 215716621825SDmitry Karpeev 215816621825SDmitry Karpeev Input Parameter: 2159bb7acecfSBarry Smith . dm - the `DM` object 216016621825SDmitry Karpeev 216116621825SDmitry Karpeev Output Parameters: 216220f4b53cSBarry Smith + n - The number of subproblems in the domain decomposition (or `NULL` if not requested) 216320f4b53cSBarry Smith . namelist - The name for each subdomain (or `NULL` if not requested) 21640298fd71SBarry Smith . innerislist - The global indices for each inner subdomain (or NULL, if not requested) 21650298fd71SBarry Smith . outerislist - The global indices for each outer subdomain (or NULL, if not requested) 216620f4b53cSBarry Smith - dmlist - The `DM`s for each subdomain subproblem (or NULL, if not requested; if `NULL` is returned, no `DM`s are defined) 216716621825SDmitry Karpeev 216816621825SDmitry Karpeev Level: intermediate 216916621825SDmitry Karpeev 2170bb7acecfSBarry Smith Note: 2171a4e35b19SJacob Faibussowitsch Each `IS` contains the global indices of the dofs of the corresponding subdomains with in the 2172a4e35b19SJacob Faibussowitsch dofs of the original `DM`. The inner subdomains conceptually define a nonoverlapping 2173a4e35b19SJacob Faibussowitsch covering, while outer subdomains can overlap. 2174a4e35b19SJacob Faibussowitsch 2175a4e35b19SJacob Faibussowitsch The optional list of `DM`s define a `DM` for each subproblem. 2176a4e35b19SJacob Faibussowitsch 217716621825SDmitry Karpeev The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with 2178bb7acecfSBarry Smith `PetscFree()`, every entry of is should be destroyed with `ISDestroy()`, every entry of dm should be destroyed with `DMDestroy()`, 2179bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 218016621825SDmitry Karpeev 2181a4e35b19SJacob Faibussowitsch Developer Notes: 218220f4b53cSBarry Smith The `dmlist` is for the inner subdomains or the outer subdomains or all subdomains? 2183bb7acecfSBarry Smith 218460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateFieldDecomposition()`, `DMDestroy()`, `DMCreateDomainDecompositionScatters()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 218516621825SDmitry Karpeev @*/ 2186d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecomposition(DM dm, PetscInt *n, char ***namelist, IS **innerislist, IS **outerislist, DM **dmlist) 2187d71ae5a4SJacob Faibussowitsch { 2188be081cd6SPeter Brune DMSubDomainHookLink link; 2189be081cd6SPeter Brune PetscInt i, l; 219016621825SDmitry Karpeev 219116621825SDmitry Karpeev PetscFunctionBegin; 219216621825SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 21939371c9d4SSatish Balay if (n) { 21944f572ea9SToby Isaac PetscAssertPointer(n, 2); 21959371c9d4SSatish Balay *n = 0; 21969371c9d4SSatish Balay } 21979371c9d4SSatish Balay if (namelist) { 21984f572ea9SToby Isaac PetscAssertPointer(namelist, 3); 21999371c9d4SSatish Balay *namelist = NULL; 22009371c9d4SSatish Balay } 22019371c9d4SSatish Balay if (innerislist) { 22024f572ea9SToby Isaac PetscAssertPointer(innerislist, 4); 22039371c9d4SSatish Balay *innerislist = NULL; 22049371c9d4SSatish Balay } 22059371c9d4SSatish Balay if (outerislist) { 22064f572ea9SToby Isaac PetscAssertPointer(outerislist, 5); 22079371c9d4SSatish Balay *outerislist = NULL; 22089371c9d4SSatish Balay } 22099371c9d4SSatish Balay if (dmlist) { 22104f572ea9SToby Isaac PetscAssertPointer(dmlist, 6); 22119371c9d4SSatish Balay *dmlist = NULL; 22129371c9d4SSatish Balay } 2213f3f0edfdSDmitry Karpeev /* 2214f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2215f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2216f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2217f3f0edfdSDmitry Karpeev */ 22187a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 221916621825SDmitry Karpeev if (dm->ops->createdomaindecomposition) { 2220dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createdomaindecomposition, &l, namelist, innerislist, outerislist, dmlist); 222114a18fd3SPeter Brune /* copy subdomain hooks and context over to the subdomain DMs */ 2222f891f5b9SPatrick Sanan if (dmlist && *dmlist) { 2223be081cd6SPeter Brune for (i = 0; i < l; i++) { 2224be081cd6SPeter Brune for (link = dm->subdomainhook; link; link = link->next) { 22259566063dSJacob Faibussowitsch if (link->ddhook) PetscCall((*link->ddhook)(dm, (*dmlist)[i], link->ctx)); 2226be081cd6SPeter Brune } 2227648262bbSPatrick Sanan if (dm->ctx) (*dmlist)[i]->ctx = dm->ctx; 2228e7c4fc90SDmitry Karpeev } 222914a18fd3SPeter Brune } 2230bb7acecfSBarry Smith if (n) *n = l; 223114a18fd3SPeter Brune } 22323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2233e30e807fSPeter Brune } 2234e30e807fSPeter Brune 2235e30e807fSPeter Brune /*@C 2236e30e807fSPeter Brune DMCreateDomainDecompositionScatters - Returns scatters to the subdomain vectors from the global vector 2237e30e807fSPeter Brune 223820f4b53cSBarry Smith Not Collective 2239e30e807fSPeter Brune 2240e30e807fSPeter Brune Input Parameters: 2241bb7acecfSBarry Smith + dm - the `DM` object 2242e30e807fSPeter Brune . n - the number of subdomain scatters 2243e30e807fSPeter Brune - subdms - the local subdomains 2244e30e807fSPeter Brune 2245e30e807fSPeter Brune Output Parameters: 22466b867d5aSJose E. Roman + iscat - scatter from global vector to nonoverlapping global vector entries on subdomain 2247e30e807fSPeter Brune . oscat - scatter from global vector to overlapping global vector entries on subdomain 2248e30e807fSPeter Brune - gscat - scatter from global vector to local vector on subdomain (fills in ghosts) 2249e30e807fSPeter Brune 225020f4b53cSBarry Smith Level: developer 225120f4b53cSBarry Smith 2252bb7acecfSBarry Smith Note: 2253bb7acecfSBarry Smith This is an alternative to the iis and ois arguments in `DMCreateDomainDecomposition()` that allow for the solution 2254e30e807fSPeter Brune of general nonlinear problems with overlapping subdomain methods. While merely having index sets that enable subsets 2255e30e807fSPeter Brune of the residual equations to be created is fine for linear problems, nonlinear problems require local assembly of 2256e30e807fSPeter Brune solution and residual data. 2257e30e807fSPeter Brune 2258a4e35b19SJacob Faibussowitsch Developer Notes: 2259a4e35b19SJacob Faibussowitsch Can the subdms input be anything or are they exactly the `DM` obtained from 2260a4e35b19SJacob Faibussowitsch `DMCreateDomainDecomposition()`? 2261bb7acecfSBarry Smith 22621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 2263e30e807fSPeter Brune @*/ 2264d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecompositionScatters(DM dm, PetscInt n, DM *subdms, VecScatter **iscat, VecScatter **oscat, VecScatter **gscat) 2265d71ae5a4SJacob Faibussowitsch { 2266e30e807fSPeter Brune PetscFunctionBegin; 2267e30e807fSPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 22684f572ea9SToby Isaac PetscAssertPointer(subdms, 3); 2269dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createddscatters, n, subdms, iscat, oscat, gscat); 22703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2271e7c4fc90SDmitry Karpeev } 2272e7c4fc90SDmitry Karpeev 227347c6ae99SBarry Smith /*@ 2274bb7acecfSBarry Smith DMRefine - Refines a `DM` object using a standard nonadaptive refinement of the underlying mesh 227547c6ae99SBarry Smith 227620f4b53cSBarry Smith Collective 227747c6ae99SBarry Smith 2278d8d19677SJose E. Roman Input Parameters: 2279bb7acecfSBarry Smith + dm - the `DM` object 2280bb7acecfSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`) 228147c6ae99SBarry Smith 228247c6ae99SBarry Smith Output Parameter: 228320f4b53cSBarry Smith . dmf - the refined `DM`, or `NULL` 2284ae0a1c52SMatthew G Knepley 228520f4b53cSBarry Smith Options Database Key: 2286412e9a14SMatthew G. Knepley . -dm_plex_cell_refiner <strategy> - chooses the refinement strategy, e.g. regular, tohex 2287412e9a14SMatthew G. Knepley 228847c6ae99SBarry Smith Level: developer 228947c6ae99SBarry Smith 229020f4b53cSBarry Smith Note: 229120f4b53cSBarry Smith If no refinement was done, the return value is `NULL` 229220f4b53cSBarry Smith 22931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 229447c6ae99SBarry Smith @*/ 2295d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefine(DM dm, MPI_Comm comm, DM *dmf) 2296d71ae5a4SJacob Faibussowitsch { 2297c833c3b5SJed Brown DMRefineHookLink link; 229847c6ae99SBarry Smith 229947c6ae99SBarry Smith PetscFunctionBegin; 2300732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 23019566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Refine, dm, 0, 0, 0)); 2302dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, refine, comm, dmf); 23034057135bSMatthew G Knepley if (*dmf) { 230443842a1eSJed Brown (*dmf)->ops->creatematrix = dm->ops->creatematrix; 23058865f1eaSKarl Rupp 23069566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmf)); 23078865f1eaSKarl Rupp 2308644e2e5bSBarry Smith (*dmf)->ctx = dm->ctx; 23090598a293SJed Brown (*dmf)->leveldown = dm->leveldown; 2310656b349aSBarry Smith (*dmf)->levelup = dm->levelup + 1; 23118865f1eaSKarl Rupp 23129566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmf, dm->mattype)); 2313c833c3b5SJed Brown for (link = dm->refinehook; link; link = link->next) { 23141baa6e33SBarry Smith if (link->refinehook) PetscCall((*link->refinehook)(dm, *dmf, link->ctx)); 2315c833c3b5SJed Brown } 2316c833c3b5SJed Brown } 23179566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Refine, dm, 0, 0, 0)); 23183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2319c833c3b5SJed Brown } 2320c833c3b5SJed Brown 2321bb9467b5SJed Brown /*@C 2322c833c3b5SJed Brown DMRefineHookAdd - adds a callback to be run when interpolating a nonlinear problem to a finer grid 2323c833c3b5SJed Brown 232420f4b53cSBarry Smith Logically Collective; No Fortran Support 2325c833c3b5SJed Brown 23264165533cSJose E. Roman Input Parameters: 2327bb7acecfSBarry Smith + coarse - `DM` on which to run a hook when interpolating to a finer level 2328bb7acecfSBarry Smith . refinehook - function to run when setting up the finer level 2329f826b5fcSPierre Jolivet . interphook - function to run to update data on finer levels (once per `SNESSolve()`) 233020f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2331c833c3b5SJed Brown 233220f4b53cSBarry Smith Calling sequence of `refinehook`: 2333bb7acecfSBarry Smith + coarse - coarse level `DM` 2334bb7acecfSBarry Smith . fine - fine level `DM` to interpolate problem to 2335c833c3b5SJed Brown - ctx - optional user-defined function context 2336c833c3b5SJed Brown 233720f4b53cSBarry Smith Calling sequence of `interphook`: 2338bb7acecfSBarry Smith + coarse - coarse level `DM` 2339c833c3b5SJed Brown . interp - matrix interpolating a coarse-level solution to the finer grid 2340bb7acecfSBarry Smith . fine - fine level `DM` to update 2341c833c3b5SJed Brown - ctx - optional user-defined function context 2342c833c3b5SJed Brown 2343c833c3b5SJed Brown Level: advanced 2344c833c3b5SJed Brown 2345c833c3b5SJed Brown Notes: 2346bb7acecfSBarry Smith This function is only needed if auxiliary data that is attached to the `DM`s via, for example, `PetscObjectCompose()`, needs to be 2347bb7acecfSBarry Smith passed to fine grids while grid sequencing. 2348bb7acecfSBarry Smith 2349bb7acecfSBarry Smith The actual interpolation is done when `DMInterpolate()` is called. 2350c833c3b5SJed Brown 2351c833c3b5SJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 2352c833c3b5SJed Brown 23531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2354c833c3b5SJed Brown @*/ 2355a4e35b19SJacob Faibussowitsch PetscErrorCode DMRefineHookAdd(DM coarse, PetscErrorCode (*refinehook)(DM coarse, DM fine, void *ctx), PetscErrorCode (*interphook)(DM coarse, Mat interp, DM fine, void *ctx), void *ctx) 2356d71ae5a4SJacob Faibussowitsch { 2357c833c3b5SJed Brown DMRefineHookLink link, *p; 2358c833c3b5SJed Brown 2359c833c3b5SJed Brown PetscFunctionBegin; 2360c833c3b5SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 23613d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 23623ba16761SJacob Faibussowitsch if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 23633d8e3701SJed Brown } 23649566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2365c833c3b5SJed Brown link->refinehook = refinehook; 2366c833c3b5SJed Brown link->interphook = interphook; 2367c833c3b5SJed Brown link->ctx = ctx; 23680298fd71SBarry Smith link->next = NULL; 2369c833c3b5SJed Brown *p = link; 23703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2371c833c3b5SJed Brown } 2372c833c3b5SJed Brown 23733d8e3701SJed Brown /*@C 2374bb7acecfSBarry Smith DMRefineHookRemove - remove a callback from the list of hooks, that have been set with `DMRefineHookAdd()`, to be run when interpolating 2375bb7acecfSBarry Smith a nonlinear problem to a finer grid 23763d8e3701SJed Brown 237720f4b53cSBarry Smith Logically Collective; No Fortran Support 23783d8e3701SJed Brown 23794165533cSJose E. Roman Input Parameters: 2380bb7acecfSBarry Smith + coarse - the `DM` on which to run a hook when restricting to a coarser level 2381bb7acecfSBarry Smith . refinehook - function to run when setting up a finer level 2382bb7acecfSBarry Smith . interphook - function to run to update data on finer levels 238320f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 23843d8e3701SJed Brown 23853d8e3701SJed Brown Level: advanced 23863d8e3701SJed Brown 2387bb7acecfSBarry Smith Note: 23883d8e3701SJed Brown This function does nothing if the hook is not in the list. 23893d8e3701SJed Brown 23901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `DMCoarsenHookRemove()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 23913d8e3701SJed Brown @*/ 2392d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookRemove(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx) 2393d71ae5a4SJacob Faibussowitsch { 23943d8e3701SJed Brown DMRefineHookLink link, *p; 23953d8e3701SJed Brown 23963d8e3701SJed Brown PetscFunctionBegin; 23973d8e3701SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 23983d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 23993d8e3701SJed Brown if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) { 24003d8e3701SJed Brown link = *p; 24013d8e3701SJed Brown *p = link->next; 24029566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 24033d8e3701SJed Brown break; 24043d8e3701SJed Brown } 24053d8e3701SJed Brown } 24063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24073d8e3701SJed Brown } 24083d8e3701SJed Brown 2409c833c3b5SJed Brown /*@ 2410bb7acecfSBarry Smith DMInterpolate - interpolates user-defined problem data attached to a `DM` to a finer `DM` by running hooks registered by `DMRefineHookAdd()` 2411c833c3b5SJed Brown 2412c833c3b5SJed Brown Collective if any hooks are 2413c833c3b5SJed Brown 24144165533cSJose E. Roman Input Parameters: 2415bb7acecfSBarry Smith + coarse - coarser `DM` to use as a base 2416bb7acecfSBarry Smith . interp - interpolation matrix, apply using `MatInterpolate()` 2417bb7acecfSBarry Smith - fine - finer `DM` to update 2418c833c3b5SJed Brown 2419c833c3b5SJed Brown Level: developer 2420c833c3b5SJed Brown 242160225df5SJacob Faibussowitsch Developer Notes: 2422bb7acecfSBarry Smith This routine is called `DMInterpolate()` while the hook is called `DMRefineHookAdd()`. It would be better to have an 2423bb7acecfSBarry Smith an API with consistent terminology. 2424bb7acecfSBarry Smith 24251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `MatInterpolate()` 2426c833c3b5SJed Brown @*/ 2427d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolate(DM coarse, Mat interp, DM fine) 2428d71ae5a4SJacob Faibussowitsch { 2429c833c3b5SJed Brown DMRefineHookLink link; 2430c833c3b5SJed Brown 2431c833c3b5SJed Brown PetscFunctionBegin; 2432c833c3b5SJed Brown for (link = fine->refinehook; link; link = link->next) { 24331baa6e33SBarry Smith if (link->interphook) PetscCall((*link->interphook)(coarse, interp, fine, link->ctx)); 24344057135bSMatthew G Knepley } 24353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 243647c6ae99SBarry Smith } 243747c6ae99SBarry Smith 2438eb3f98d2SBarry Smith /*@ 24391f3379b2SToby Isaac DMInterpolateSolution - Interpolates a solution from a coarse mesh to a fine mesh. 24401f3379b2SToby Isaac 244120f4b53cSBarry Smith Collective 24421f3379b2SToby Isaac 24434165533cSJose E. Roman Input Parameters: 2444bb7acecfSBarry Smith + coarse - coarse `DM` 2445bb7acecfSBarry Smith . fine - fine `DM` 2446bb7acecfSBarry Smith . interp - (optional) the matrix computed by `DMCreateInterpolation()`. Implementations may not need this, but if it 2447bb7acecfSBarry Smith is available it can avoid some recomputation. If it is provided, `MatInterpolate()` will be used if 2448bb7acecfSBarry Smith the coarse `DM` does not have a specialized implementation. 24491f3379b2SToby Isaac - coarseSol - solution on the coarse mesh 24501f3379b2SToby Isaac 24514165533cSJose E. Roman Output Parameter: 24521f3379b2SToby Isaac . fineSol - the interpolation of coarseSol to the fine mesh 24531f3379b2SToby Isaac 24541f3379b2SToby Isaac Level: developer 24551f3379b2SToby Isaac 2456bb7acecfSBarry Smith Note: 2457bb7acecfSBarry Smith This function exists because the interpolation of a solution vector between meshes is not always a linear 24581f3379b2SToby Isaac map. For example, if a boundary value problem has an inhomogeneous Dirichlet boundary condition that is compressed 24591f3379b2SToby Isaac out of the solution vector. Or if interpolation is inherently a nonlinear operation, such as a method using 24601f3379b2SToby Isaac slope-limiting reconstruction. 24611f3379b2SToby Isaac 246260225df5SJacob Faibussowitsch Developer Notes: 2463bb7acecfSBarry Smith This doesn't just interpolate "solutions" so its API name is questionable. 2464bb7acecfSBarry Smith 24651cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMInterpolate()`, `DMCreateInterpolation()` 24661f3379b2SToby Isaac @*/ 2467d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolateSolution(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol) 2468d71ae5a4SJacob Faibussowitsch { 24691f3379b2SToby Isaac PetscErrorCode (*interpsol)(DM, DM, Mat, Vec, Vec) = NULL; 24701f3379b2SToby Isaac 24711f3379b2SToby Isaac PetscFunctionBegin; 24721f3379b2SToby Isaac PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 24731f3379b2SToby Isaac if (interp) PetscValidHeaderSpecific(interp, MAT_CLASSID, 3); 24741f3379b2SToby Isaac PetscValidHeaderSpecific(coarseSol, VEC_CLASSID, 4); 24751f3379b2SToby Isaac PetscValidHeaderSpecific(fineSol, VEC_CLASSID, 5); 24761f3379b2SToby Isaac 24779566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)coarse, "DMInterpolateSolution_C", &interpsol)); 24781f3379b2SToby Isaac if (interpsol) { 24799566063dSJacob Faibussowitsch PetscCall((*interpsol)(coarse, fine, interp, coarseSol, fineSol)); 24801f3379b2SToby Isaac } else if (interp) { 24819566063dSJacob Faibussowitsch PetscCall(MatInterpolate(interp, coarseSol, fineSol)); 248298921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)coarse), PETSC_ERR_SUP, "DM %s does not implement DMInterpolateSolution()", ((PetscObject)coarse)->type_name); 24833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24841f3379b2SToby Isaac } 24851f3379b2SToby Isaac 24861f3379b2SToby Isaac /*@ 2487bb7acecfSBarry Smith DMGetRefineLevel - Gets the number of refinements that have generated this `DM` from some initial `DM`. 2488eb3f98d2SBarry Smith 2489eb3f98d2SBarry Smith Not Collective 2490eb3f98d2SBarry Smith 2491eb3f98d2SBarry Smith Input Parameter: 2492bb7acecfSBarry Smith . dm - the `DM` object 2493eb3f98d2SBarry Smith 2494eb3f98d2SBarry Smith Output Parameter: 2495eb3f98d2SBarry Smith . level - number of refinements 2496eb3f98d2SBarry Smith 2497eb3f98d2SBarry Smith Level: developer 2498eb3f98d2SBarry Smith 2499bb7acecfSBarry Smith Note: 2500bb7acecfSBarry Smith This can be used, by example, to set the number of coarser levels associated with this `DM` for a multigrid solver. 2501bb7acecfSBarry Smith 25021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2503eb3f98d2SBarry Smith @*/ 2504d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRefineLevel(DM dm, PetscInt *level) 2505d71ae5a4SJacob Faibussowitsch { 2506eb3f98d2SBarry Smith PetscFunctionBegin; 2507eb3f98d2SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2508eb3f98d2SBarry Smith *level = dm->levelup; 25093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2510eb3f98d2SBarry Smith } 2511eb3f98d2SBarry Smith 2512fef3a512SBarry Smith /*@ 2513bb7acecfSBarry Smith DMSetRefineLevel - Sets the number of refinements that have generated this `DM`. 2514fef3a512SBarry Smith 2515fef3a512SBarry Smith Not Collective 2516fef3a512SBarry Smith 2517d8d19677SJose E. Roman Input Parameters: 2518bb7acecfSBarry Smith + dm - the `DM` object 2519fef3a512SBarry Smith - level - number of refinements 2520fef3a512SBarry Smith 2521fef3a512SBarry Smith Level: advanced 2522fef3a512SBarry Smith 252395452b02SPatrick Sanan Notes: 2524bb7acecfSBarry Smith This value is used by `PCMG` to determine how many multigrid levels to use 2525fef3a512SBarry Smith 2526bb7acecfSBarry Smith The values are usually set automatically by the process that is causing the refinements of an initial `DM` by calling this routine. 2527bb7acecfSBarry Smith 25281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRefineLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2529fef3a512SBarry Smith @*/ 2530d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRefineLevel(DM dm, PetscInt level) 2531d71ae5a4SJacob Faibussowitsch { 2532fef3a512SBarry Smith PetscFunctionBegin; 2533fef3a512SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2534fef3a512SBarry Smith dm->levelup = level; 25353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2536fef3a512SBarry Smith } 2537fef3a512SBarry Smith 2538d410b0cfSMatthew G. Knepley /*@ 2539bb7acecfSBarry Smith DMExtrude - Extrude a `DM` object from a surface 2540d410b0cfSMatthew G. Knepley 254120f4b53cSBarry Smith Collective 2542d410b0cfSMatthew G. Knepley 2543f1a722f8SMatthew G. Knepley Input Parameters: 2544bb7acecfSBarry Smith + dm - the `DM` object 2545d410b0cfSMatthew G. Knepley - layers - the number of extruded cell layers 2546d410b0cfSMatthew G. Knepley 2547d410b0cfSMatthew G. Knepley Output Parameter: 254820f4b53cSBarry Smith . dme - the extruded `DM`, or `NULL` 2549d410b0cfSMatthew G. Knepley 2550d410b0cfSMatthew G. Knepley Level: developer 2551d410b0cfSMatthew G. Knepley 255220f4b53cSBarry Smith Note: 255320f4b53cSBarry Smith If no extrusion was done, the return value is `NULL` 255420f4b53cSBarry Smith 25551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()` 2556d410b0cfSMatthew G. Knepley @*/ 2557d71ae5a4SJacob Faibussowitsch PetscErrorCode DMExtrude(DM dm, PetscInt layers, DM *dme) 2558d71ae5a4SJacob Faibussowitsch { 2559d410b0cfSMatthew G. Knepley PetscFunctionBegin; 2560d410b0cfSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2561dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, extrude, layers, dme); 2562d410b0cfSMatthew G. Knepley if (*dme) { 2563d410b0cfSMatthew G. Knepley (*dme)->ops->creatematrix = dm->ops->creatematrix; 25649566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dme)); 2565d410b0cfSMatthew G. Knepley (*dme)->ctx = dm->ctx; 25669566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dme, dm->mattype)); 2567d410b0cfSMatthew G. Knepley } 25683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2569d410b0cfSMatthew G. Knepley } 2570d410b0cfSMatthew G. Knepley 2571d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformDM_Internal(DM dm, DM *tdm) 2572d71ae5a4SJacob Faibussowitsch { 2573ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2574ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 25754f572ea9SToby Isaac PetscAssertPointer(tdm, 2); 2576ca3d3a14SMatthew G. Knepley *tdm = dm->transformDM; 25773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2578ca3d3a14SMatthew G. Knepley } 2579ca3d3a14SMatthew G. Knepley 2580d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformVec_Internal(DM dm, Vec *tv) 2581d71ae5a4SJacob Faibussowitsch { 2582ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2583ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 25844f572ea9SToby Isaac PetscAssertPointer(tv, 2); 2585ca3d3a14SMatthew G. Knepley *tv = dm->transform; 25863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2587ca3d3a14SMatthew G. Knepley } 2588ca3d3a14SMatthew G. Knepley 2589ca3d3a14SMatthew G. Knepley /*@ 2590bb7acecfSBarry Smith DMHasBasisTransform - Whether the `DM` employs a basis transformation from functions in global vectors to functions in local vectors 2591ca3d3a14SMatthew G. Knepley 2592ca3d3a14SMatthew G. Knepley Input Parameter: 259320f4b53cSBarry Smith . dm - The `DM` 2594ca3d3a14SMatthew G. Knepley 2595ca3d3a14SMatthew G. Knepley Output Parameter: 259620f4b53cSBarry Smith . flg - `PETSC_TRUE` if a basis transformation should be done 2597ca3d3a14SMatthew G. Knepley 2598ca3d3a14SMatthew G. Knepley Level: developer 2599ca3d3a14SMatthew G. Knepley 26001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`, `DMPlexCreateBasisRotation()` 2601ca3d3a14SMatthew G. Knepley @*/ 2602d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasBasisTransform(DM dm, PetscBool *flg) 2603d71ae5a4SJacob Faibussowitsch { 2604ca3d3a14SMatthew G. Knepley Vec tv; 2605ca3d3a14SMatthew G. Knepley 2606ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2607ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26084f572ea9SToby Isaac PetscAssertPointer(flg, 2); 26099566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 2610ca3d3a14SMatthew G. Knepley *flg = tv ? PETSC_TRUE : PETSC_FALSE; 26113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2612ca3d3a14SMatthew G. Knepley } 2613ca3d3a14SMatthew G. Knepley 2614d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConstructBasisTransform_Internal(DM dm) 2615d71ae5a4SJacob Faibussowitsch { 2616ca3d3a14SMatthew G. Knepley PetscSection s, ts; 2617ca3d3a14SMatthew G. Knepley PetscScalar *ta; 2618ca3d3a14SMatthew G. Knepley PetscInt cdim, pStart, pEnd, p, Nf, f, Nc, dof; 2619ca3d3a14SMatthew G. Knepley 2620ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 26219566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 26229566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 26239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 26249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 26259566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->transformDM)); 26269566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm->transformDM, &ts)); 26279566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(ts, Nf)); 26289566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(ts, pStart, pEnd)); 2629ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26309566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(s, f, &Nc)); 2631ca3d3a14SMatthew G. Knepley /* We could start to label fields by their transformation properties */ 2632ca3d3a14SMatthew G. Knepley if (Nc != cdim) continue; 2633ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 26349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, p, f, &dof)); 2635ca3d3a14SMatthew G. Knepley if (!dof) continue; 26369566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(ts, p, f, PetscSqr(cdim))); 26379566063dSJacob Faibussowitsch PetscCall(PetscSectionAddDof(ts, p, PetscSqr(cdim))); 2638ca3d3a14SMatthew G. Knepley } 2639ca3d3a14SMatthew G. Knepley } 26409566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(ts)); 26419566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(dm->transformDM, &dm->transform)); 26429566063dSJacob Faibussowitsch PetscCall(VecGetArray(dm->transform, &ta)); 2643ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 2644ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof)); 2646ca3d3a14SMatthew G. Knepley if (dof) { 2647ca3d3a14SMatthew G. Knepley PetscReal x[3] = {0.0, 0.0, 0.0}; 2648ca3d3a14SMatthew G. Knepley PetscScalar *tva; 2649ca3d3a14SMatthew G. Knepley const PetscScalar *A; 2650ca3d3a14SMatthew G. Knepley 2651ca3d3a14SMatthew G. Knepley /* TODO Get quadrature point for this dual basis vector for coordinate */ 26529566063dSJacob Faibussowitsch PetscCall((*dm->transformGetMatrix)(dm, x, PETSC_TRUE, &A, dm->transformCtx)); 26539566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm->transformDM, p, f, ta, (void *)&tva)); 26549566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tva, A, PetscSqr(cdim))); 2655ca3d3a14SMatthew G. Knepley } 2656ca3d3a14SMatthew G. Knepley } 2657ca3d3a14SMatthew G. Knepley } 26589566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(dm->transform, &ta)); 26593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2660ca3d3a14SMatthew G. Knepley } 2661ca3d3a14SMatthew G. Knepley 2662d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyTransform(DM dm, DM newdm) 2663d71ae5a4SJacob Faibussowitsch { 2664ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2665ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2666ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(newdm, DM_CLASSID, 2); 2667ca3d3a14SMatthew G. Knepley newdm->transformCtx = dm->transformCtx; 2668ca3d3a14SMatthew G. Knepley newdm->transformSetUp = dm->transformSetUp; 2669ca3d3a14SMatthew G. Knepley newdm->transformDestroy = NULL; 2670ca3d3a14SMatthew G. Knepley newdm->transformGetMatrix = dm->transformGetMatrix; 26719566063dSJacob Faibussowitsch if (newdm->transformSetUp) PetscCall(DMConstructBasisTransform_Internal(newdm)); 26723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2673ca3d3a14SMatthew G. Knepley } 2674ca3d3a14SMatthew G. Knepley 2675bb9467b5SJed Brown /*@C 2676bb7acecfSBarry Smith DMGlobalToLocalHookAdd - adds a callback to be run when `DMGlobalToLocal()` is called 2677baf369e7SPeter Brune 267820f4b53cSBarry Smith Logically Collective 2679baf369e7SPeter Brune 26804165533cSJose E. Roman Input Parameters: 2681bb7acecfSBarry Smith + dm - the `DM` 2682bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMGlobalToLocalBegin()` 2683bb7acecfSBarry Smith . endhook - function to run after `DMGlobalToLocalEnd()` has completed 268420f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2685baf369e7SPeter Brune 268620f4b53cSBarry Smith Calling sequence of `beginhook`: 2687a4e35b19SJacob Faibussowitsch + dm - global `DM` 2688baf369e7SPeter Brune . g - global vector 2689baf369e7SPeter Brune . mode - mode 2690baf369e7SPeter Brune . l - local vector 2691baf369e7SPeter Brune - ctx - optional user-defined function context 2692baf369e7SPeter Brune 269320f4b53cSBarry Smith Calling sequence of `endhook`: 2694a4e35b19SJacob Faibussowitsch + dm - global `DM` 2695a4e35b19SJacob Faibussowitsch . g - global vector 2696a4e35b19SJacob Faibussowitsch . mode - mode 2697a4e35b19SJacob Faibussowitsch . l - local vector 2698baf369e7SPeter Brune - ctx - optional user-defined function context 2699baf369e7SPeter Brune 2700baf369e7SPeter Brune Level: advanced 2701baf369e7SPeter Brune 2702bb7acecfSBarry Smith Note: 2703bb7acecfSBarry Smith The hook may be used to provide, for example, values that represent boundary conditions in the local vectors that do not exist on the global vector. 2704bb7acecfSBarry Smith 27051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocal()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2706baf369e7SPeter Brune @*/ 2707a4e35b19SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), PetscErrorCode (*endhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), void *ctx) 2708d71ae5a4SJacob Faibussowitsch { 2709baf369e7SPeter Brune DMGlobalToLocalHookLink link, *p; 2710baf369e7SPeter Brune 2711baf369e7SPeter Brune PetscFunctionBegin; 2712baf369e7SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2713baf369e7SPeter Brune for (p = &dm->gtolhook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 27149566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2715baf369e7SPeter Brune link->beginhook = beginhook; 2716baf369e7SPeter Brune link->endhook = endhook; 2717baf369e7SPeter Brune link->ctx = ctx; 27180298fd71SBarry Smith link->next = NULL; 2719baf369e7SPeter Brune *p = link; 27203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2721baf369e7SPeter Brune } 2722baf369e7SPeter Brune 2723d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGlobalToLocalHook_Constraints(DM dm, Vec g, InsertMode mode, Vec l, void *ctx) 2724d71ae5a4SJacob Faibussowitsch { 27254c274da1SToby Isaac Mat cMat; 272679769bd5SJed Brown Vec cVec, cBias; 27274c274da1SToby Isaac PetscSection section, cSec; 27284c274da1SToby Isaac PetscInt pStart, pEnd, p, dof; 27294c274da1SToby Isaac 27304c274da1SToby Isaac PetscFunctionBegin; 2731a4e35b19SJacob Faibussowitsch (void)g; 2732a4e35b19SJacob Faibussowitsch (void)ctx; 27334c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 27349566063dSJacob Faibussowitsch PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, &cBias)); 27354c274da1SToby Isaac if (cMat && (mode == INSERT_VALUES || mode == INSERT_ALL_VALUES || mode == INSERT_BC_VALUES)) { 27365db9a05bSToby Isaac PetscInt nRows; 27375db9a05bSToby Isaac 27389566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 27393ba16761SJacob Faibussowitsch if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS); 27409566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 27419566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 27429566063dSJacob Faibussowitsch PetscCall(MatMult(cMat, l, cVec)); 27439566063dSJacob Faibussowitsch if (cBias) PetscCall(VecAXPY(cVec, 1., cBias)); 27449566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 27454c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 27469566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 27474c274da1SToby Isaac if (dof) { 27484c274da1SToby Isaac PetscScalar *vals; 27499566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(cVec, cSec, p, &vals)); 27509566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(l, section, p, vals, INSERT_ALL_VALUES)); 27514c274da1SToby Isaac } 27524c274da1SToby Isaac } 27539566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 27544c274da1SToby Isaac } 27553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27564c274da1SToby Isaac } 27574c274da1SToby Isaac 275847c6ae99SBarry Smith /*@ 275901729b5cSPatrick Sanan DMGlobalToLocal - update local vectors from global vector 276001729b5cSPatrick Sanan 276120f4b53cSBarry Smith Neighbor-wise Collective 276201729b5cSPatrick Sanan 276301729b5cSPatrick Sanan Input Parameters: 2764bb7acecfSBarry Smith + dm - the `DM` object 276501729b5cSPatrick Sanan . g - the global vector 2766bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 276701729b5cSPatrick Sanan - l - the local vector 276801729b5cSPatrick Sanan 276920f4b53cSBarry Smith Level: beginner 277020f4b53cSBarry Smith 277101729b5cSPatrick Sanan Notes: 2772bb7acecfSBarry Smith The communication involved in this update can be overlapped with computation by instead using 2773bb7acecfSBarry Smith `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()`. 2774bb7acecfSBarry Smith 2775bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 277601729b5cSPatrick Sanan 27771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocalHookAdd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, 277860225df5SJacob Faibussowitsch `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, 2779bb7acecfSBarry Smith `DMGlobalToLocalBegin()` `DMGlobalToLocalEnd()` 278001729b5cSPatrick Sanan @*/ 2781d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocal(DM dm, Vec g, InsertMode mode, Vec l) 2782d71ae5a4SJacob Faibussowitsch { 278301729b5cSPatrick Sanan PetscFunctionBegin; 27849566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, g, mode, l)); 27859566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, g, mode, l)); 27863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 278701729b5cSPatrick Sanan } 278801729b5cSPatrick Sanan 278901729b5cSPatrick Sanan /*@ 279047c6ae99SBarry Smith DMGlobalToLocalBegin - Begins updating local vectors from global vector 279147c6ae99SBarry Smith 279220f4b53cSBarry Smith Neighbor-wise Collective 279347c6ae99SBarry Smith 279447c6ae99SBarry Smith Input Parameters: 2795bb7acecfSBarry Smith + dm - the `DM` object 279647c6ae99SBarry Smith . g - the global vector 2797bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 279847c6ae99SBarry Smith - l - the local vector 279947c6ae99SBarry Smith 280001729b5cSPatrick Sanan Level: intermediate 280147c6ae99SBarry Smith 2802bb7acecfSBarry Smith Notes: 2803bb7acecfSBarry Smith The operation is completed with `DMGlobalToLocalEnd()` 2804bb7acecfSBarry Smith 2805bb7acecfSBarry Smith One can perform local computations between the `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` to overlap communication and computation 2806bb7acecfSBarry Smith 2807bb7acecfSBarry Smith `DMGlobalToLocal()` is a short form of `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` 2808bb7acecfSBarry Smith 2809bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 2810bb7acecfSBarry Smith 281160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()` 281247c6ae99SBarry Smith @*/ 2813d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 2814d71ae5a4SJacob Faibussowitsch { 28157128ae9fSMatthew G Knepley PetscSF sf; 2816baf369e7SPeter Brune DMGlobalToLocalHookLink link; 281747c6ae99SBarry Smith 281847c6ae99SBarry Smith PetscFunctionBegin; 2819171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2820baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 28211baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, g, mode, l, link->ctx)); 2822baf369e7SPeter Brune } 28239566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 28247128ae9fSMatthew G Knepley if (sf) { 2825ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2826ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2827d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 28287128ae9fSMatthew G Knepley 28297a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 28309566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 28319566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 28329566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(sf, MPIU_SCALAR, gmtype, gArray, lmtype, lArray, MPI_REPLACE)); 28339566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 28349566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 28357128ae9fSMatthew G Knepley } else { 2836fa1e479aSStefano Zampini PetscUseTypeMethod(dm, globaltolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 28377128ae9fSMatthew G Knepley } 28383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 283947c6ae99SBarry Smith } 284047c6ae99SBarry Smith 284147c6ae99SBarry Smith /*@ 284247c6ae99SBarry Smith DMGlobalToLocalEnd - Ends updating local vectors from global vector 284347c6ae99SBarry Smith 284420f4b53cSBarry Smith Neighbor-wise Collective 284547c6ae99SBarry Smith 284647c6ae99SBarry Smith Input Parameters: 2847bb7acecfSBarry Smith + dm - the `DM` object 284847c6ae99SBarry Smith . g - the global vector 2849bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 285047c6ae99SBarry Smith - l - the local vector 285147c6ae99SBarry Smith 285201729b5cSPatrick Sanan Level: intermediate 285347c6ae99SBarry Smith 2854bb7acecfSBarry Smith Note: 2855bb7acecfSBarry Smith See `DMGlobalToLocalBegin()` for details. 2856bb7acecfSBarry Smith 285760225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()` 285847c6ae99SBarry Smith @*/ 2859d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 2860d71ae5a4SJacob Faibussowitsch { 28617128ae9fSMatthew G Knepley PetscSF sf; 2862ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2863ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2864ca3d3a14SMatthew G. Knepley PetscBool transform; 2865baf369e7SPeter Brune DMGlobalToLocalHookLink link; 2866d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 286747c6ae99SBarry Smith 286847c6ae99SBarry Smith PetscFunctionBegin; 2869171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 28709566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 28719566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 28727128ae9fSMatthew G Knepley if (sf) { 28737a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 28747128ae9fSMatthew G Knepley 28759566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 28769566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 28779566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, gArray, lArray, MPI_REPLACE)); 28789566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 28799566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 28809566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexGlobalToLocalBasis(dm, l)); 28817128ae9fSMatthew G Knepley } else { 2882fa1e479aSStefano Zampini PetscUseTypeMethod(dm, globaltolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 28837128ae9fSMatthew G Knepley } 28849566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalHook_Constraints(dm, g, mode, l, NULL)); 2885baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 28869566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 2887baf369e7SPeter Brune } 28883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 288947c6ae99SBarry Smith } 289047c6ae99SBarry Smith 2891d4d07f1eSToby Isaac /*@C 2892d4d07f1eSToby Isaac DMLocalToGlobalHookAdd - adds a callback to be run when a local to global is called 2893d4d07f1eSToby Isaac 289420f4b53cSBarry Smith Logically Collective 2895d4d07f1eSToby Isaac 28964165533cSJose E. Roman Input Parameters: 2897bb7acecfSBarry Smith + dm - the `DM` 2898bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMLocalToGlobalBegin()` 2899bb7acecfSBarry Smith . endhook - function to run after `DMLocalToGlobalEnd()` has completed 290020f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2901d4d07f1eSToby Isaac 290220f4b53cSBarry Smith Calling sequence of `beginhook`: 2903a4e35b19SJacob Faibussowitsch + global - global `DM` 2904d4d07f1eSToby Isaac . l - local vector 2905d4d07f1eSToby Isaac . mode - mode 2906d4d07f1eSToby Isaac . g - global vector 2907d4d07f1eSToby Isaac - ctx - optional user-defined function context 2908d4d07f1eSToby Isaac 290920f4b53cSBarry Smith Calling sequence of `endhook`: 2910bb7acecfSBarry Smith + global - global `DM` 2911d4d07f1eSToby Isaac . l - local vector 2912d4d07f1eSToby Isaac . mode - mode 2913d4d07f1eSToby Isaac . g - global vector 2914d4d07f1eSToby Isaac - ctx - optional user-defined function context 2915d4d07f1eSToby Isaac 2916d4d07f1eSToby Isaac Level: advanced 2917d4d07f1eSToby Isaac 29181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMRefineHookAdd()`, `DMGlobalToLocalHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2919d4d07f1eSToby Isaac @*/ 2920a4e35b19SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), PetscErrorCode (*endhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), void *ctx) 2921d71ae5a4SJacob Faibussowitsch { 2922d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, *p; 2923d4d07f1eSToby Isaac 2924d4d07f1eSToby Isaac PetscFunctionBegin; 2925d4d07f1eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2926d4d07f1eSToby Isaac for (p = &dm->ltoghook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 29279566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2928d4d07f1eSToby Isaac link->beginhook = beginhook; 2929d4d07f1eSToby Isaac link->endhook = endhook; 2930d4d07f1eSToby Isaac link->ctx = ctx; 2931d4d07f1eSToby Isaac link->next = NULL; 2932d4d07f1eSToby Isaac *p = link; 29333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2934d4d07f1eSToby Isaac } 2935d4d07f1eSToby Isaac 2936d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMLocalToGlobalHook_Constraints(DM dm, Vec l, InsertMode mode, Vec g, void *ctx) 2937d71ae5a4SJacob Faibussowitsch { 29384c274da1SToby Isaac PetscFunctionBegin; 2939a4e35b19SJacob Faibussowitsch (void)g; 2940a4e35b19SJacob Faibussowitsch (void)ctx; 29414c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29422b6b7d09SToby Isaac if (mode == ADD_VALUES || mode == ADD_ALL_VALUES || mode == ADD_BC_VALUES) { 29432b6b7d09SToby Isaac Mat cMat; 29442b6b7d09SToby Isaac Vec cVec; 29455db9a05bSToby Isaac PetscInt nRows; 29462b6b7d09SToby Isaac PetscSection section, cSec; 29472b6b7d09SToby Isaac PetscInt pStart, pEnd, p, dof; 29482b6b7d09SToby Isaac 29492b6b7d09SToby Isaac PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, NULL)); 29502b6b7d09SToby Isaac if (!cMat) PetscFunctionReturn(PETSC_SUCCESS); 29515db9a05bSToby Isaac 29529566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 29533ba16761SJacob Faibussowitsch if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS); 29549566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 29559566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 29569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 29574c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 29589566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 29594c274da1SToby Isaac if (dof) { 29604c274da1SToby Isaac PetscInt d; 29614c274da1SToby Isaac PetscScalar *vals; 29629566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(l, section, p, &vals)); 29639566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(cVec, cSec, p, vals, mode)); 29644c274da1SToby Isaac /* for this to be the true transpose, we have to zero the values that 29654c274da1SToby Isaac * we just extracted */ 2966ad540459SPierre Jolivet for (d = 0; d < dof; d++) vals[d] = 0.; 29674c274da1SToby Isaac } 29684c274da1SToby Isaac } 29699566063dSJacob Faibussowitsch PetscCall(MatMultTransposeAdd(cMat, cVec, l, l)); 29709566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 29714c274da1SToby Isaac } 29723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29734c274da1SToby Isaac } 297401729b5cSPatrick Sanan /*@ 297501729b5cSPatrick Sanan DMLocalToGlobal - updates global vectors from local vectors 297601729b5cSPatrick Sanan 297720f4b53cSBarry Smith Neighbor-wise Collective 297801729b5cSPatrick Sanan 297901729b5cSPatrick Sanan Input Parameters: 2980bb7acecfSBarry Smith + dm - the `DM` object 298101729b5cSPatrick Sanan . l - the local vector 2982bb7acecfSBarry Smith . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 298301729b5cSPatrick Sanan - g - the global vector 298401729b5cSPatrick Sanan 298520f4b53cSBarry Smith Level: beginner 298620f4b53cSBarry Smith 298701729b5cSPatrick Sanan Notes: 298801729b5cSPatrick Sanan The communication involved in this update can be overlapped with computation by using 2989bb7acecfSBarry Smith `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()`. 299001729b5cSPatrick Sanan 2991bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 2992bb7acecfSBarry Smith 2993bb7acecfSBarry Smith `INSERT_VALUES` is not supported for `DMDA`; in that case simply compute the values directly into a global vector instead of a local one. 2994bb7acecfSBarry Smith 2995bb7acecfSBarry Smith Use `DMLocalToGlobalHookAdd()` to add additional operations that are performed on the data during the update process 299601729b5cSPatrick Sanan 29971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`, `DMLocalToGlobalHookAdd()`, `DMGlobaToLocallHookAdd()` 299801729b5cSPatrick Sanan @*/ 2999d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobal(DM dm, Vec l, InsertMode mode, Vec g) 3000d71ae5a4SJacob Faibussowitsch { 300101729b5cSPatrick Sanan PetscFunctionBegin; 30029566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, l, mode, g)); 30039566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, l, mode, g)); 30043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 300501729b5cSPatrick Sanan } 30064c274da1SToby Isaac 300747c6ae99SBarry Smith /*@ 300801729b5cSPatrick Sanan DMLocalToGlobalBegin - begins updating global vectors from local vectors 30099a42bb27SBarry Smith 301020f4b53cSBarry Smith Neighbor-wise Collective 30119a42bb27SBarry Smith 30129a42bb27SBarry Smith Input Parameters: 3013bb7acecfSBarry Smith + dm - the `DM` object 3014f6813fd5SJed Brown . l - the local vector 3015aa624791SPierre Jolivet . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 30161eb28f2eSBarry Smith - g - the global vector 30179a42bb27SBarry Smith 301820f4b53cSBarry Smith Level: intermediate 301920f4b53cSBarry Smith 302095452b02SPatrick Sanan Notes: 3021bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 3022bb7acecfSBarry Smith 3023bb7acecfSBarry Smith `INSERT_VALUES is` not supported for `DMDA`, in that case simply compute the values directly into a global vector instead of a local one. 3024bb7acecfSBarry Smith 3025bb7acecfSBarry Smith Use `DMLocalToGlobalEnd()` to complete the communication process. 3026bb7acecfSBarry Smith 3027bb7acecfSBarry Smith `DMLocalToGlobal()` is a short form of `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()` 3028bb7acecfSBarry Smith 3029bb7acecfSBarry Smith `DMLocalToGlobalHookAdd()` may be used to provide additional operations that are performed during the update process. 30309a42bb27SBarry Smith 30311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()` 30329a42bb27SBarry Smith @*/ 3033d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalBegin(DM dm, Vec l, InsertMode mode, Vec g) 3034d71ae5a4SJacob Faibussowitsch { 30357128ae9fSMatthew G Knepley PetscSF sf; 303684330215SMatthew G. Knepley PetscSection s, gs; 3037d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3038ca3d3a14SMatthew G. Knepley Vec tmpl; 3039ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3040ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3041fa88e482SJed Brown PetscBool isInsert, transform, l_inplace = PETSC_FALSE, g_inplace = PETSC_FALSE; 3042d0295fc0SJunchao Zhang PetscMemType lmtype = PETSC_MEMTYPE_HOST, gmtype = PETSC_MEMTYPE_HOST; 30439a42bb27SBarry Smith 30449a42bb27SBarry Smith PetscFunctionBegin; 3045171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3046d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 30471baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, l, mode, g, link->ctx)); 3048d4d07f1eSToby Isaac } 30499566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalHook_Constraints(dm, l, mode, g, NULL)); 30509566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 30519566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 30527128ae9fSMatthew G Knepley switch (mode) { 30537128ae9fSMatthew G Knepley case INSERT_VALUES: 30547128ae9fSMatthew G Knepley case INSERT_ALL_VALUES: 3055d71ae5a4SJacob Faibussowitsch case INSERT_BC_VALUES: 3056d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3057d71ae5a4SJacob Faibussowitsch break; 30587128ae9fSMatthew G Knepley case ADD_VALUES: 30597128ae9fSMatthew G Knepley case ADD_ALL_VALUES: 3060d71ae5a4SJacob Faibussowitsch case ADD_BC_VALUES: 3061d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3062d71ae5a4SJacob Faibussowitsch break; 3063d71ae5a4SJacob Faibussowitsch default: 3064d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 30657128ae9fSMatthew G Knepley } 3066ca3d3a14SMatthew G. Knepley if ((sf && !isInsert) || (s && isInsert)) { 30679566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3068ca3d3a14SMatthew G. Knepley if (transform) { 30699566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 30709566063dSJacob Faibussowitsch PetscCall(VecCopy(l, tmpl)); 30719566063dSJacob Faibussowitsch PetscCall(DMPlexLocalToGlobalBasis(dm, tmpl)); 30729566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3073fa88e482SJed Brown } else if (isInsert) { 30749566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l, &lArray)); 3075fa88e482SJed Brown } else { 30769566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, &lmtype)); 3077fa88e482SJed Brown l_inplace = PETSC_TRUE; 3078ca3d3a14SMatthew G. Knepley } 3079fa88e482SJed Brown if (s && isInsert) { 30809566063dSJacob Faibussowitsch PetscCall(VecGetArray(g, &gArray)); 3081fa88e482SJed Brown } else { 30829566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, &gmtype)); 3083fa88e482SJed Brown g_inplace = PETSC_TRUE; 3084fa88e482SJed Brown } 3085ca3d3a14SMatthew G. Knepley if (sf && !isInsert) { 30869566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(sf, MPIU_SCALAR, lmtype, lArray, gmtype, gArray, MPIU_SUM)); 308784330215SMatthew G. Knepley } else if (s && isInsert) { 308884330215SMatthew G. Knepley PetscInt gStart, pStart, pEnd, p; 308984330215SMatthew G. Knepley 30909566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gs)); 30919566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 30929566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(g, &gStart, NULL)); 309384330215SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 3094b3b16f48SMatthew G. Knepley PetscInt dof, gdof, cdof, gcdof, off, goff, d, e; 309584330215SMatthew G. Knepley 30969566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s, p, &dof)); 30979566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(gs, p, &gdof)); 30989566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s, p, &cdof)); 30999566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(gs, p, &gcdof)); 31009566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(s, p, &off)); 31019566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(gs, p, &goff)); 3102b3b16f48SMatthew G. Knepley /* Ignore off-process data and points with no global data */ 310303442857SMatthew G. Knepley if (!gdof || goff < 0) continue; 31047a8be351SBarry Smith PetscCheck(dof == gdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 3105b3b16f48SMatthew G. Knepley /* If no constraints are enforced in the global vector */ 3106b3b16f48SMatthew G. Knepley if (!gcdof) { 310784330215SMatthew G. Knepley for (d = 0; d < dof; ++d) gArray[goff - gStart + d] = lArray[off + d]; 3108b3b16f48SMatthew G. Knepley /* If constraints are enforced in the global vector */ 3109b3b16f48SMatthew G. Knepley } else if (cdof == gcdof) { 311084330215SMatthew G. Knepley const PetscInt *cdofs; 311184330215SMatthew G. Knepley PetscInt cind = 0; 311284330215SMatthew G. Knepley 31139566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(s, p, &cdofs)); 3114b3b16f48SMatthew G. Knepley for (d = 0, e = 0; d < dof; ++d) { 31159371c9d4SSatish Balay if ((cind < cdof) && (d == cdofs[cind])) { 31169371c9d4SSatish Balay ++cind; 31179371c9d4SSatish Balay continue; 31189371c9d4SSatish Balay } 3119b3b16f48SMatthew G. Knepley gArray[goff - gStart + e++] = lArray[off + d]; 312084330215SMatthew G. Knepley } 31217a8be351SBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 312284330215SMatthew G. Knepley } 3123ca3d3a14SMatthew G. Knepley } 3124fa88e482SJed Brown if (g_inplace) { 31259566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 3126fa88e482SJed Brown } else { 31279566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(g, &gArray)); 3128fa88e482SJed Brown } 3129ca3d3a14SMatthew G. Knepley if (transform) { 31309566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 31319566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3132fa88e482SJed Brown } else if (l_inplace) { 31339566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3134ca3d3a14SMatthew G. Knepley } else { 31359566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l, &lArray)); 3136ca3d3a14SMatthew G. Knepley } 31377128ae9fSMatthew G Knepley } else { 3138fa1e479aSStefano Zampini PetscUseTypeMethod(dm, localtoglobalbegin, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g); 31397128ae9fSMatthew G Knepley } 31403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31419a42bb27SBarry Smith } 31429a42bb27SBarry Smith 31439a42bb27SBarry Smith /*@ 31449a42bb27SBarry Smith DMLocalToGlobalEnd - updates global vectors from local vectors 314547c6ae99SBarry Smith 314620f4b53cSBarry Smith Neighbor-wise Collective 314747c6ae99SBarry Smith 314847c6ae99SBarry Smith Input Parameters: 3149bb7acecfSBarry Smith + dm - the `DM` object 3150f6813fd5SJed Brown . l - the local vector 3151bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 3152f6813fd5SJed Brown - g - the global vector 315347c6ae99SBarry Smith 315401729b5cSPatrick Sanan Level: intermediate 315547c6ae99SBarry Smith 3156bb7acecfSBarry Smith Note: 3157bb7acecfSBarry Smith See `DMLocalToGlobalBegin()` for full details 3158bb7acecfSBarry Smith 315960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()` 316047c6ae99SBarry Smith @*/ 3161d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalEnd(DM dm, Vec l, InsertMode mode, Vec g) 3162d71ae5a4SJacob Faibussowitsch { 31637128ae9fSMatthew G Knepley PetscSF sf; 316484330215SMatthew G. Knepley PetscSection s; 3165d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3166ca3d3a14SMatthew G. Knepley PetscBool isInsert, transform; 316747c6ae99SBarry Smith 316847c6ae99SBarry Smith PetscFunctionBegin; 3169171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 31709566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 31719566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 31727128ae9fSMatthew G Knepley switch (mode) { 31737128ae9fSMatthew G Knepley case INSERT_VALUES: 3174d71ae5a4SJacob Faibussowitsch case INSERT_ALL_VALUES: 3175d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3176d71ae5a4SJacob Faibussowitsch break; 31777128ae9fSMatthew G Knepley case ADD_VALUES: 3178d71ae5a4SJacob Faibussowitsch case ADD_ALL_VALUES: 3179d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3180d71ae5a4SJacob Faibussowitsch break; 3181d71ae5a4SJacob Faibussowitsch default: 3182d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 31837128ae9fSMatthew G Knepley } 318484330215SMatthew G. Knepley if (sf && !isInsert) { 3185ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3186ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3187ca3d3a14SMatthew G. Knepley Vec tmpl; 318884330215SMatthew G. Knepley 31899566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3190ca3d3a14SMatthew G. Knepley if (transform) { 31919566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 31929566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3193ca3d3a14SMatthew G. Knepley } else { 31949566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, NULL)); 3195ca3d3a14SMatthew G. Knepley } 31969566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, NULL)); 31979566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_SCALAR, lArray, gArray, MPIU_SUM)); 3198ca3d3a14SMatthew G. Knepley if (transform) { 31999566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 32009566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3201ca3d3a14SMatthew G. Knepley } else { 32029566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3203ca3d3a14SMatthew G. Knepley } 32049566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 320584330215SMatthew G. Knepley } else if (s && isInsert) { 32067128ae9fSMatthew G Knepley } else { 3207fa1e479aSStefano Zampini PetscUseTypeMethod(dm, localtoglobalend, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g); 32087128ae9fSMatthew G Knepley } 3209d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 32109566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 3211d4d07f1eSToby Isaac } 32123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 321347c6ae99SBarry Smith } 321447c6ae99SBarry Smith 3215f089877aSRichard Tran Mills /*@ 3216a4e35b19SJacob Faibussowitsch DMLocalToLocalBegin - Begins the process of mapping values from a local vector (that include 3217a4e35b19SJacob Faibussowitsch ghost points that contain irrelevant values) to another local vector where the ghost points 3218a4e35b19SJacob Faibussowitsch in the second are set correctly from values on other MPI ranks. 3219f089877aSRichard Tran Mills 322020f4b53cSBarry Smith Neighbor-wise Collective 3221f089877aSRichard Tran Mills 3222f089877aSRichard Tran Mills Input Parameters: 3223bb7acecfSBarry Smith + dm - the `DM` object 3224bc0a1609SRichard Tran Mills . g - the original local vector 3225bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3226f089877aSRichard Tran Mills 3227bc0a1609SRichard Tran Mills Output Parameter: 3228bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3229f089877aSRichard Tran Mills 3230f089877aSRichard Tran Mills Level: intermediate 3231f089877aSRichard Tran Mills 3232a4e35b19SJacob Faibussowitsch Notes: 3233a4e35b19SJacob Faibussowitsch Must be followed by `DMLocalToLocalEnd()`. 3234a4e35b19SJacob Faibussowitsch 323560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3236f089877aSRichard Tran Mills @*/ 3237d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 3238d71ae5a4SJacob Faibussowitsch { 3239f089877aSRichard Tran Mills PetscFunctionBegin; 3240f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32419f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 32429f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 32439f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 32443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3245f089877aSRichard Tran Mills } 3246f089877aSRichard Tran Mills 3247f089877aSRichard Tran Mills /*@ 3248bb7acecfSBarry Smith DMLocalToLocalEnd - Maps from a local vector to another local vector where the ghost 3249bb7acecfSBarry Smith points in the second are set correctly. Must be preceded by `DMLocalToLocalBegin()`. 3250f089877aSRichard Tran Mills 325120f4b53cSBarry Smith Neighbor-wise Collective 3252f089877aSRichard Tran Mills 3253f089877aSRichard Tran Mills Input Parameters: 325460225df5SJacob Faibussowitsch + dm - the `DM` object 3255bc0a1609SRichard Tran Mills . g - the original local vector 3256bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3257f089877aSRichard Tran Mills 3258bc0a1609SRichard Tran Mills Output Parameter: 3259bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3260f089877aSRichard Tran Mills 3261f089877aSRichard Tran Mills Level: intermediate 3262f089877aSRichard Tran Mills 326360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3264f089877aSRichard Tran Mills @*/ 3265d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 3266d71ae5a4SJacob Faibussowitsch { 3267f089877aSRichard Tran Mills PetscFunctionBegin; 3268f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32699f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 32709f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 32719f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 32723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3273f089877aSRichard Tran Mills } 3274f089877aSRichard Tran Mills 327547c6ae99SBarry Smith /*@ 3276bb7acecfSBarry Smith DMCoarsen - Coarsens a `DM` object using a standard, non-adaptive coarsening of the underlying mesh 327747c6ae99SBarry Smith 327820f4b53cSBarry Smith Collective 327947c6ae99SBarry Smith 3280d8d19677SJose E. Roman Input Parameters: 3281bb7acecfSBarry Smith + dm - the `DM` object 328220f4b53cSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`) 328347c6ae99SBarry Smith 328447c6ae99SBarry Smith Output Parameter: 3285bb7acecfSBarry Smith . dmc - the coarsened `DM` 328647c6ae99SBarry Smith 328747c6ae99SBarry Smith Level: developer 328847c6ae99SBarry Smith 32891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 329047c6ae99SBarry Smith @*/ 3291d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsen(DM dm, MPI_Comm comm, DM *dmc) 3292d71ae5a4SJacob Faibussowitsch { 3293b17ce1afSJed Brown DMCoarsenHookLink link; 329447c6ae99SBarry Smith 329547c6ae99SBarry Smith PetscFunctionBegin; 3296171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32979566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Coarsen, dm, 0, 0, 0)); 3298dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, coarsen, comm, dmc); 3299b9d85ea2SLisandro Dalcin if (*dmc) { 3300a3574896SRichard Tran Mills (*dmc)->bind_below = dm->bind_below; /* Propagate this from parent DM; otherwise -dm_bind_below will be useless for multigrid cases. */ 33019566063dSJacob Faibussowitsch PetscCall(DMSetCoarseDM(dm, *dmc)); 330243842a1eSJed Brown (*dmc)->ops->creatematrix = dm->ops->creatematrix; 33039566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmc)); 3304644e2e5bSBarry Smith (*dmc)->ctx = dm->ctx; 33050598a293SJed Brown (*dmc)->levelup = dm->levelup; 3306656b349aSBarry Smith (*dmc)->leveldown = dm->leveldown + 1; 33079566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmc, dm->mattype)); 3308b17ce1afSJed Brown for (link = dm->coarsenhook; link; link = link->next) { 33099566063dSJacob Faibussowitsch if (link->coarsenhook) PetscCall((*link->coarsenhook)(dm, *dmc, link->ctx)); 3310b17ce1afSJed Brown } 3311b9d85ea2SLisandro Dalcin } 33129566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Coarsen, dm, 0, 0, 0)); 33137a8be351SBarry Smith PetscCheck(*dmc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "NULL coarse mesh produced"); 33143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3315b17ce1afSJed Brown } 3316b17ce1afSJed Brown 3317bb9467b5SJed Brown /*@C 3318b17ce1afSJed Brown DMCoarsenHookAdd - adds a callback to be run when restricting a nonlinear problem to the coarse grid 3319b17ce1afSJed Brown 332020f4b53cSBarry Smith Logically Collective; No Fortran Support 3321b17ce1afSJed Brown 33224165533cSJose E. Roman Input Parameters: 3323bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3324b17ce1afSJed Brown . coarsenhook - function to run when setting up a coarser level 3325bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels (called once per `SNESSolve()`) 332620f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3327b17ce1afSJed Brown 332820f4b53cSBarry Smith Calling sequence of `coarsenhook`: 3329bb7acecfSBarry Smith + fine - fine level `DM` 3330bb7acecfSBarry Smith . coarse - coarse level `DM` to restrict problem to 3331b17ce1afSJed Brown - ctx - optional user-defined function context 3332b17ce1afSJed Brown 333320f4b53cSBarry Smith Calling sequence of `restricthook`: 3334bb7acecfSBarry Smith + fine - fine level `DM` 3335bb7acecfSBarry Smith . mrestrict - matrix restricting a fine-level solution to the coarse grid, usually the transpose of the interpolation 3336c833c3b5SJed Brown . rscale - scaling vector for restriction 3337c833c3b5SJed Brown . inject - matrix restricting by injection 3338b17ce1afSJed Brown . coarse - coarse level DM to update 3339b17ce1afSJed Brown - ctx - optional user-defined function context 3340b17ce1afSJed Brown 3341b17ce1afSJed Brown Level: advanced 3342b17ce1afSJed Brown 3343b17ce1afSJed Brown Notes: 3344bb7acecfSBarry Smith This function is only needed if auxiliary data, attached to the `DM` with `PetscObjectCompose()`, needs to be set up or passed from the fine `DM` to the coarse `DM`. 3345b17ce1afSJed Brown 3346b17ce1afSJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 3347b17ce1afSJed Brown 3348b17ce1afSJed Brown In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3349bb7acecfSBarry Smith extract the finest level information from its context (instead of from the `SNES`). 3350b17ce1afSJed Brown 3351bb7acecfSBarry Smith The hooks are automatically called by `DMRestrict()` 3352bb7acecfSBarry Smith 33531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3354b17ce1afSJed Brown @*/ 3355a4e35b19SJacob Faibussowitsch PetscErrorCode DMCoarsenHookAdd(DM fine, PetscErrorCode (*coarsenhook)(DM fine, DM coarse, void *ctx), PetscErrorCode (*restricthook)(DM fine, Mat mrestrict, Vec rscale, Mat inject, DM coarse, void *ctx), void *ctx) 3356d71ae5a4SJacob Faibussowitsch { 3357b17ce1afSJed Brown DMCoarsenHookLink link, *p; 3358b17ce1afSJed Brown 3359b17ce1afSJed Brown PetscFunctionBegin; 3360b17ce1afSJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 33611e3d8eccSJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 33623ba16761SJacob Faibussowitsch if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 33631e3d8eccSJed Brown } 33649566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 3365b17ce1afSJed Brown link->coarsenhook = coarsenhook; 3366b17ce1afSJed Brown link->restricthook = restricthook; 3367b17ce1afSJed Brown link->ctx = ctx; 33680298fd71SBarry Smith link->next = NULL; 3369b17ce1afSJed Brown *p = link; 33703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3371b17ce1afSJed Brown } 3372b17ce1afSJed Brown 3373dc822a44SJed Brown /*@C 3374bb7acecfSBarry Smith DMCoarsenHookRemove - remove a callback set with `DMCoarsenHookAdd()` 3375dc822a44SJed Brown 337620f4b53cSBarry Smith Logically Collective; No Fortran Support 3377dc822a44SJed Brown 33784165533cSJose E. Roman Input Parameters: 3379bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3380dc822a44SJed Brown . coarsenhook - function to run when setting up a coarser level 3381bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels 338220f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3383dc822a44SJed Brown 3384dc822a44SJed Brown Level: advanced 3385dc822a44SJed Brown 3386bb7acecfSBarry Smith Note: 3387dc822a44SJed Brown This function does nothing if the hook is not in the list. 3388dc822a44SJed Brown 33891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3390dc822a44SJed Brown @*/ 3391d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookRemove(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx) 3392d71ae5a4SJacob Faibussowitsch { 3393dc822a44SJed Brown DMCoarsenHookLink link, *p; 3394dc822a44SJed Brown 3395dc822a44SJed Brown PetscFunctionBegin; 3396dc822a44SJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 3397dc822a44SJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3398dc822a44SJed Brown if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3399dc822a44SJed Brown link = *p; 3400dc822a44SJed Brown *p = link->next; 34019566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3402dc822a44SJed Brown break; 3403dc822a44SJed Brown } 3404dc822a44SJed Brown } 34053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3406dc822a44SJed Brown } 3407dc822a44SJed Brown 3408b17ce1afSJed Brown /*@ 3409bb7acecfSBarry Smith DMRestrict - restricts user-defined problem data to a coarser `DM` by running hooks registered by `DMCoarsenHookAdd()` 3410b17ce1afSJed Brown 3411b17ce1afSJed Brown Collective if any hooks are 3412b17ce1afSJed Brown 34134165533cSJose E. Roman Input Parameters: 3414bb7acecfSBarry Smith + fine - finer `DM` from which the data is obtained 3415bb7acecfSBarry Smith . restrct - restriction matrix, apply using `MatRestrict()`, usually the transpose of the interpolation 3416e91eccc2SStefano Zampini . rscale - scaling vector for restriction 3417bb7acecfSBarry Smith . inject - injection matrix, also use `MatRestrict()` 341820f4b53cSBarry Smith - coarse - coarser `DM` to update 3419b17ce1afSJed Brown 3420b17ce1afSJed Brown Level: developer 3421b17ce1afSJed Brown 342260225df5SJacob Faibussowitsch Developer Notes: 3423bb7acecfSBarry Smith Though this routine is called `DMRestrict()` the hooks are added with `DMCoarsenHookAdd()`, a consistent terminology would be better 3424bb7acecfSBarry Smith 34251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMInterpolate()`, `DMRefineHookAdd()` 3426b17ce1afSJed Brown @*/ 3427d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestrict(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse) 3428d71ae5a4SJacob Faibussowitsch { 3429b17ce1afSJed Brown DMCoarsenHookLink link; 3430b17ce1afSJed Brown 3431b17ce1afSJed Brown PetscFunctionBegin; 3432b17ce1afSJed Brown for (link = fine->coarsenhook; link; link = link->next) { 34331baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(fine, restrct, rscale, inject, coarse, link->ctx)); 3434b17ce1afSJed Brown } 34353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 343647c6ae99SBarry Smith } 343747c6ae99SBarry Smith 3438bb9467b5SJed Brown /*@C 3439be081cd6SPeter Brune DMSubDomainHookAdd - adds a callback to be run when restricting a problem to the coarse grid 34405dbd56e3SPeter Brune 344120f4b53cSBarry Smith Logically Collective; No Fortran Support 34425dbd56e3SPeter Brune 34434165533cSJose E. Roman Input Parameters: 3444bb7acecfSBarry Smith + global - global `DM` 3445bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 34465dbd56e3SPeter Brune . restricthook - function to run to update data on block solve (at the beginning of the block solve) 344720f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 34485dbd56e3SPeter Brune 344920f4b53cSBarry Smith Calling sequence of `ddhook`: 3450bb7acecfSBarry Smith + global - global `DM` 3451bb7acecfSBarry Smith . block - block `DM` 3452ec4806b8SPeter Brune - ctx - optional user-defined function context 3453ec4806b8SPeter Brune 345420f4b53cSBarry Smith Calling sequence of `restricthook`: 3455bb7acecfSBarry Smith + global - global `DM` 34565dbd56e3SPeter Brune . out - scatter to the outer (with ghost and overlap points) block vector 34575dbd56e3SPeter Brune . in - scatter to block vector values only owned locally 3458bb7acecfSBarry Smith . block - block `DM` 34595dbd56e3SPeter Brune - ctx - optional user-defined function context 34605dbd56e3SPeter Brune 34615dbd56e3SPeter Brune Level: advanced 34625dbd56e3SPeter Brune 34635dbd56e3SPeter Brune Notes: 3464bb7acecfSBarry Smith This function is only needed if auxiliary data needs to be set up on subdomain `DM`s. 34655dbd56e3SPeter Brune 34665dbd56e3SPeter Brune If this function is called multiple times, the hooks will be run in the order they are added. 34675dbd56e3SPeter Brune 34685dbd56e3SPeter Brune In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3469bb7acecfSBarry Smith extract the global information from its context (instead of from the `SNES`). 34705dbd56e3SPeter Brune 34711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 34725dbd56e3SPeter Brune @*/ 3473a4e35b19SJacob Faibussowitsch PetscErrorCode DMSubDomainHookAdd(DM global, PetscErrorCode (*ddhook)(DM global, DM block, void *ctx), PetscErrorCode (*restricthook)(DM global, VecScatter out, VecScatter in, DM block, void *ctx), void *ctx) 3474d71ae5a4SJacob Faibussowitsch { 3475be081cd6SPeter Brune DMSubDomainHookLink link, *p; 34765dbd56e3SPeter Brune 34775dbd56e3SPeter Brune PetscFunctionBegin; 34785dbd56e3SPeter Brune PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3479b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 34803ba16761SJacob Faibussowitsch if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 3481b3a6b972SJed Brown } 34829566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 34835dbd56e3SPeter Brune link->restricthook = restricthook; 3484be081cd6SPeter Brune link->ddhook = ddhook; 34855dbd56e3SPeter Brune link->ctx = ctx; 34860298fd71SBarry Smith link->next = NULL; 34875dbd56e3SPeter Brune *p = link; 34883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34895dbd56e3SPeter Brune } 34905dbd56e3SPeter Brune 3491b3a6b972SJed Brown /*@C 3492b3a6b972SJed Brown DMSubDomainHookRemove - remove a callback from the list to be run when restricting a problem to the coarse grid 3493b3a6b972SJed Brown 349420f4b53cSBarry Smith Logically Collective; No Fortran Support 3495b3a6b972SJed Brown 34964165533cSJose E. Roman Input Parameters: 3497bb7acecfSBarry Smith + global - global `DM` 3498bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 3499b3a6b972SJed Brown . restricthook - function to run to update data on block solve (at the beginning of the block solve) 350020f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3501b3a6b972SJed Brown 3502b3a6b972SJed Brown Level: advanced 3503b3a6b972SJed Brown 35041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3505b3a6b972SJed Brown @*/ 3506d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookRemove(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx) 3507d71ae5a4SJacob Faibussowitsch { 3508b3a6b972SJed Brown DMSubDomainHookLink link, *p; 3509b3a6b972SJed Brown 3510b3a6b972SJed Brown PetscFunctionBegin; 3511b3a6b972SJed Brown PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3512b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3513b3a6b972SJed Brown if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3514b3a6b972SJed Brown link = *p; 3515b3a6b972SJed Brown *p = link->next; 35169566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3517b3a6b972SJed Brown break; 3518b3a6b972SJed Brown } 3519b3a6b972SJed Brown } 35203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3521b3a6b972SJed Brown } 3522b3a6b972SJed Brown 35235dbd56e3SPeter Brune /*@ 3524bb7acecfSBarry Smith DMSubDomainRestrict - restricts user-defined problem data to a block `DM` by running hooks registered by `DMSubDomainHookAdd()` 35255dbd56e3SPeter Brune 35265dbd56e3SPeter Brune Collective if any hooks are 35275dbd56e3SPeter Brune 35284165533cSJose E. Roman Input Parameters: 3529a4e35b19SJacob Faibussowitsch + global - The global `DM` to use as a base 3530a4e35b19SJacob Faibussowitsch . oscatter - The scatter from domain global vector filling subdomain global vector with overlap 3531a4e35b19SJacob Faibussowitsch . gscatter - The scatter from domain global vector filling subdomain local vector with ghosts 3532a4e35b19SJacob Faibussowitsch - subdm - The subdomain `DM` to update 35335dbd56e3SPeter Brune 35345dbd56e3SPeter Brune Level: developer 35355dbd56e3SPeter Brune 35361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()` 35375dbd56e3SPeter Brune @*/ 3538d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainRestrict(DM global, VecScatter oscatter, VecScatter gscatter, DM subdm) 3539d71ae5a4SJacob Faibussowitsch { 3540be081cd6SPeter Brune DMSubDomainHookLink link; 35415dbd56e3SPeter Brune 35425dbd56e3SPeter Brune PetscFunctionBegin; 3543be081cd6SPeter Brune for (link = global->subdomainhook; link; link = link->next) { 35441baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(global, oscatter, gscatter, subdm, link->ctx)); 35455dbd56e3SPeter Brune } 35463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35475dbd56e3SPeter Brune } 35485dbd56e3SPeter Brune 35495fe1f584SPeter Brune /*@ 3550bb7acecfSBarry Smith DMGetCoarsenLevel - Gets the number of coarsenings that have generated this `DM`. 35515fe1f584SPeter Brune 35525fe1f584SPeter Brune Not Collective 35535fe1f584SPeter Brune 35545fe1f584SPeter Brune Input Parameter: 3555bb7acecfSBarry Smith . dm - the `DM` object 35565fe1f584SPeter Brune 35575fe1f584SPeter Brune Output Parameter: 35586a7d9d85SPeter Brune . level - number of coarsenings 35595fe1f584SPeter Brune 35605fe1f584SPeter Brune Level: developer 35615fe1f584SPeter Brune 35621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMSetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 35635fe1f584SPeter Brune @*/ 3564d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarsenLevel(DM dm, PetscInt *level) 3565d71ae5a4SJacob Faibussowitsch { 35665fe1f584SPeter Brune PetscFunctionBegin; 35675fe1f584SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 35684f572ea9SToby Isaac PetscAssertPointer(level, 2); 35695fe1f584SPeter Brune *level = dm->leveldown; 35703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35715fe1f584SPeter Brune } 35725fe1f584SPeter Brune 35739a64c4a8SMatthew G. Knepley /*@ 3574bb7acecfSBarry Smith DMSetCoarsenLevel - Sets the number of coarsenings that have generated this `DM`. 35759a64c4a8SMatthew G. Knepley 357620f4b53cSBarry Smith Collective 35779a64c4a8SMatthew G. Knepley 35789a64c4a8SMatthew G. Knepley Input Parameters: 3579bb7acecfSBarry Smith + dm - the `DM` object 35809a64c4a8SMatthew G. Knepley - level - number of coarsenings 35819a64c4a8SMatthew G. Knepley 35829a64c4a8SMatthew G. Knepley Level: developer 35839a64c4a8SMatthew G. Knepley 3584bb7acecfSBarry Smith Note: 3585bb7acecfSBarry Smith This is rarely used directly, the information is automatically set when a `DM` is created with `DMCoarsen()` 3586bb7acecfSBarry Smith 358742747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 35889a64c4a8SMatthew G. Knepley @*/ 3589d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarsenLevel(DM dm, PetscInt level) 3590d71ae5a4SJacob Faibussowitsch { 35919a64c4a8SMatthew G. Knepley PetscFunctionBegin; 35929a64c4a8SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 35939a64c4a8SMatthew G. Knepley dm->leveldown = level; 35943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35959a64c4a8SMatthew G. Knepley } 35969a64c4a8SMatthew G. Knepley 359747c6ae99SBarry Smith /*@C 3598bb7acecfSBarry Smith DMRefineHierarchy - Refines a `DM` object, all levels at once 359947c6ae99SBarry Smith 360020f4b53cSBarry Smith Collective 360147c6ae99SBarry Smith 3602d8d19677SJose E. Roman Input Parameters: 3603bb7acecfSBarry Smith + dm - the `DM` object 360447c6ae99SBarry Smith - nlevels - the number of levels of refinement 360547c6ae99SBarry Smith 360647c6ae99SBarry Smith Output Parameter: 3607bb7acecfSBarry Smith . dmf - the refined `DM` hierarchy 360847c6ae99SBarry Smith 360947c6ae99SBarry Smith Level: developer 361047c6ae99SBarry Smith 36111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMCoarsenHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 361247c6ae99SBarry Smith @*/ 3613d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHierarchy(DM dm, PetscInt nlevels, DM dmf[]) 3614d71ae5a4SJacob Faibussowitsch { 361547c6ae99SBarry Smith PetscFunctionBegin; 3616171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36177a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 36183ba16761SJacob Faibussowitsch if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS); 36194f572ea9SToby Isaac PetscAssertPointer(dmf, 3); 3620213acdd3SPierre Jolivet if (dm->ops->refine && !dm->ops->refinehierarchy) { 362147c6ae99SBarry Smith PetscInt i; 362247c6ae99SBarry Smith 36239566063dSJacob Faibussowitsch PetscCall(DMRefine(dm, PetscObjectComm((PetscObject)dm), &dmf[0])); 362448a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMRefine(dmf[i - 1], PetscObjectComm((PetscObject)dm), &dmf[i])); 3625213acdd3SPierre Jolivet } else PetscUseTypeMethod(dm, refinehierarchy, nlevels, dmf); 36263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 362747c6ae99SBarry Smith } 362847c6ae99SBarry Smith 362947c6ae99SBarry Smith /*@C 3630bb7acecfSBarry Smith DMCoarsenHierarchy - Coarsens a `DM` object, all levels at once 363147c6ae99SBarry Smith 363220f4b53cSBarry Smith Collective 363347c6ae99SBarry Smith 3634d8d19677SJose E. Roman Input Parameters: 3635bb7acecfSBarry Smith + dm - the `DM` object 363647c6ae99SBarry Smith - nlevels - the number of levels of coarsening 363747c6ae99SBarry Smith 363847c6ae99SBarry Smith Output Parameter: 3639bb7acecfSBarry Smith . dmc - the coarsened `DM` hierarchy 364047c6ae99SBarry Smith 364147c6ae99SBarry Smith Level: developer 364247c6ae99SBarry Smith 36431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMRefineHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 364447c6ae99SBarry Smith @*/ 3645d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHierarchy(DM dm, PetscInt nlevels, DM dmc[]) 3646d71ae5a4SJacob Faibussowitsch { 364747c6ae99SBarry Smith PetscFunctionBegin; 3648171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36497a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 36503ba16761SJacob Faibussowitsch if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS); 36514f572ea9SToby Isaac PetscAssertPointer(dmc, 3); 3652213acdd3SPierre Jolivet if (dm->ops->coarsen && !dm->ops->coarsenhierarchy) { 365347c6ae99SBarry Smith PetscInt i; 365447c6ae99SBarry Smith 36559566063dSJacob Faibussowitsch PetscCall(DMCoarsen(dm, PetscObjectComm((PetscObject)dm), &dmc[0])); 365648a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMCoarsen(dmc[i - 1], PetscObjectComm((PetscObject)dm), &dmc[i])); 3657213acdd3SPierre Jolivet } else PetscUseTypeMethod(dm, coarsenhierarchy, nlevels, dmc); 36583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 365947c6ae99SBarry Smith } 366047c6ae99SBarry Smith 36611a266240SBarry Smith /*@C 3662bb7acecfSBarry Smith DMSetApplicationContextDestroy - Sets a user function that will be called to destroy the application context when the `DM` is destroyed 36631a266240SBarry Smith 3664bb7acecfSBarry Smith Logically Collective if the function is collective 36651a266240SBarry Smith 36661a266240SBarry Smith Input Parameters: 3667bb7acecfSBarry Smith + dm - the `DM` object 36681a266240SBarry Smith - destroy - the destroy function 36691a266240SBarry Smith 36701a266240SBarry Smith Level: intermediate 36711a266240SBarry Smith 36721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 3673f07f9ceaSJed Brown @*/ 3674d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContextDestroy(DM dm, PetscErrorCode (*destroy)(void **)) 3675d71ae5a4SJacob Faibussowitsch { 36761a266240SBarry Smith PetscFunctionBegin; 3677171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36781a266240SBarry Smith dm->ctxdestroy = destroy; 36793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36801a266240SBarry Smith } 36811a266240SBarry Smith 3682b07ff414SBarry Smith /*@ 3683bb7acecfSBarry Smith DMSetApplicationContext - Set a user context into a `DM` object 368447c6ae99SBarry Smith 368547c6ae99SBarry Smith Not Collective 368647c6ae99SBarry Smith 368747c6ae99SBarry Smith Input Parameters: 3688bb7acecfSBarry Smith + dm - the `DM` object 368947c6ae99SBarry Smith - ctx - the user context 369047c6ae99SBarry Smith 369147c6ae99SBarry Smith Level: intermediate 369247c6ae99SBarry Smith 3693bb7acecfSBarry Smith Note: 369435cb6cd3SPierre Jolivet A user context is a way to pass problem specific information that is accessible whenever the `DM` is available 3695bb7acecfSBarry Smith 369660225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 369747c6ae99SBarry Smith @*/ 3698d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContext(DM dm, void *ctx) 3699d71ae5a4SJacob Faibussowitsch { 370047c6ae99SBarry Smith PetscFunctionBegin; 3701171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 370247c6ae99SBarry Smith dm->ctx = ctx; 37033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 370447c6ae99SBarry Smith } 370547c6ae99SBarry Smith 370647c6ae99SBarry Smith /*@ 3707bb7acecfSBarry Smith DMGetApplicationContext - Gets a user context from a `DM` object 370847c6ae99SBarry Smith 370947c6ae99SBarry Smith Not Collective 371047c6ae99SBarry Smith 371147c6ae99SBarry Smith Input Parameter: 3712bb7acecfSBarry Smith . dm - the `DM` object 371347c6ae99SBarry Smith 371447c6ae99SBarry Smith Output Parameter: 371547c6ae99SBarry Smith . ctx - the user context 371647c6ae99SBarry Smith 371747c6ae99SBarry Smith Level: intermediate 371847c6ae99SBarry Smith 3719bb7acecfSBarry Smith Note: 372035cb6cd3SPierre Jolivet A user context is a way to pass problem specific information that is accessible whenever the `DM` is available 3721bb7acecfSBarry Smith 372242747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 372347c6ae99SBarry Smith @*/ 3724d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetApplicationContext(DM dm, void *ctx) 3725d71ae5a4SJacob Faibussowitsch { 372647c6ae99SBarry Smith PetscFunctionBegin; 3727171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37281b2093e4SBarry Smith *(void **)ctx = dm->ctx; 37293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 373047c6ae99SBarry Smith } 373147c6ae99SBarry Smith 373208da532bSDmitry Karpeev /*@C 3733bb7acecfSBarry Smith DMSetVariableBounds - sets a function to compute the lower and upper bound vectors for `SNESVI`. 373408da532bSDmitry Karpeev 373520f4b53cSBarry Smith Logically Collective 373608da532bSDmitry Karpeev 3737d8d19677SJose E. Roman Input Parameters: 373808da532bSDmitry Karpeev + dm - the DM object 373920f4b53cSBarry Smith - f - the function that computes variable bounds used by SNESVI (use `NULL` to cancel a previous function that was set) 374008da532bSDmitry Karpeev 374108da532bSDmitry Karpeev Level: intermediate 374208da532bSDmitry Karpeev 37431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`, 3744db781477SPatrick Sanan `DMSetJacobian()` 374508da532bSDmitry Karpeev @*/ 3746d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVariableBounds(DM dm, PetscErrorCode (*f)(DM, Vec, Vec)) 3747d71ae5a4SJacob Faibussowitsch { 374808da532bSDmitry Karpeev PetscFunctionBegin; 37495a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 375008da532bSDmitry Karpeev dm->ops->computevariablebounds = f; 37513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 375208da532bSDmitry Karpeev } 375308da532bSDmitry Karpeev 375408da532bSDmitry Karpeev /*@ 3755bb7acecfSBarry Smith DMHasVariableBounds - does the `DM` object have a variable bounds function? 375608da532bSDmitry Karpeev 375708da532bSDmitry Karpeev Not Collective 375808da532bSDmitry Karpeev 375908da532bSDmitry Karpeev Input Parameter: 3760bb7acecfSBarry Smith . dm - the `DM` object to destroy 376108da532bSDmitry Karpeev 376208da532bSDmitry Karpeev Output Parameter: 3763bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the variable bounds function exists 376408da532bSDmitry Karpeev 376508da532bSDmitry Karpeev Level: developer 376608da532bSDmitry Karpeev 37671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 376808da532bSDmitry Karpeev @*/ 3769d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasVariableBounds(DM dm, PetscBool *flg) 3770d71ae5a4SJacob Faibussowitsch { 377108da532bSDmitry Karpeev PetscFunctionBegin; 37725a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37734f572ea9SToby Isaac PetscAssertPointer(flg, 2); 377408da532bSDmitry Karpeev *flg = (dm->ops->computevariablebounds) ? PETSC_TRUE : PETSC_FALSE; 37753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 377608da532bSDmitry Karpeev } 377708da532bSDmitry Karpeev 377808da532bSDmitry Karpeev /*@C 3779bb7acecfSBarry Smith DMComputeVariableBounds - compute variable bounds used by `SNESVI`. 378008da532bSDmitry Karpeev 378120f4b53cSBarry Smith Logically Collective 378208da532bSDmitry Karpeev 3783f899ff85SJose E. Roman Input Parameter: 3784bb7acecfSBarry Smith . dm - the `DM` object 378508da532bSDmitry Karpeev 378660225df5SJacob Faibussowitsch Output Parameters: 378708da532bSDmitry Karpeev + xl - lower bound 378808da532bSDmitry Karpeev - xu - upper bound 378908da532bSDmitry Karpeev 3790907376e6SBarry Smith Level: advanced 3791907376e6SBarry Smith 379220f4b53cSBarry Smith Note: 379395452b02SPatrick Sanan This is generally not called by users. It calls the function provided by the user with DMSetVariableBounds() 379408da532bSDmitry Karpeev 37951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 379608da532bSDmitry Karpeev @*/ 3797d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeVariableBounds(DM dm, Vec xl, Vec xu) 3798d71ae5a4SJacob Faibussowitsch { 379908da532bSDmitry Karpeev PetscFunctionBegin; 38005a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 380108da532bSDmitry Karpeev PetscValidHeaderSpecific(xl, VEC_CLASSID, 2); 38025a84ad33SLisandro Dalcin PetscValidHeaderSpecific(xu, VEC_CLASSID, 3); 3803dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, computevariablebounds, xl, xu); 38043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 380508da532bSDmitry Karpeev } 380608da532bSDmitry Karpeev 3807b0ae01b7SPeter Brune /*@ 3808bb7acecfSBarry Smith DMHasColoring - does the `DM` object have a method of providing a coloring? 3809b0ae01b7SPeter Brune 3810b0ae01b7SPeter Brune Not Collective 3811b0ae01b7SPeter Brune 3812b0ae01b7SPeter Brune Input Parameter: 3813b0ae01b7SPeter Brune . dm - the DM object 3814b0ae01b7SPeter Brune 3815b0ae01b7SPeter Brune Output Parameter: 3816bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateColoring()`. 3817b0ae01b7SPeter Brune 3818b0ae01b7SPeter Brune Level: developer 3819b0ae01b7SPeter Brune 38201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateColoring()` 3821b0ae01b7SPeter Brune @*/ 3822d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasColoring(DM dm, PetscBool *flg) 3823d71ae5a4SJacob Faibussowitsch { 3824b0ae01b7SPeter Brune PetscFunctionBegin; 38255a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38264f572ea9SToby Isaac PetscAssertPointer(flg, 2); 3827b0ae01b7SPeter Brune *flg = (dm->ops->getcoloring) ? PETSC_TRUE : PETSC_FALSE; 38283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3829b0ae01b7SPeter Brune } 3830b0ae01b7SPeter Brune 38313ad4599aSBarry Smith /*@ 3832bb7acecfSBarry Smith DMHasCreateRestriction - does the `DM` object have a method of providing a restriction? 38333ad4599aSBarry Smith 38343ad4599aSBarry Smith Not Collective 38353ad4599aSBarry Smith 38363ad4599aSBarry Smith Input Parameter: 3837bb7acecfSBarry Smith . dm - the `DM` object 38383ad4599aSBarry Smith 38393ad4599aSBarry Smith Output Parameter: 3840bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateRestriction()`. 38413ad4599aSBarry Smith 38423ad4599aSBarry Smith Level: developer 38433ad4599aSBarry Smith 38441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateRestriction()`, `DMHasCreateInterpolation()`, `DMHasCreateInjection()` 38453ad4599aSBarry Smith @*/ 3846d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateRestriction(DM dm, PetscBool *flg) 3847d71ae5a4SJacob Faibussowitsch { 38483ad4599aSBarry Smith PetscFunctionBegin; 38495a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38504f572ea9SToby Isaac PetscAssertPointer(flg, 2); 38513ad4599aSBarry Smith *flg = (dm->ops->createrestriction) ? PETSC_TRUE : PETSC_FALSE; 38523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 38533ad4599aSBarry Smith } 38543ad4599aSBarry Smith 3855a7058e45SLawrence Mitchell /*@ 3856bb7acecfSBarry Smith DMHasCreateInjection - does the `DM` object have a method of providing an injection? 3857a7058e45SLawrence Mitchell 3858a7058e45SLawrence Mitchell Not Collective 3859a7058e45SLawrence Mitchell 3860a7058e45SLawrence Mitchell Input Parameter: 3861bb7acecfSBarry Smith . dm - the `DM` object 3862a7058e45SLawrence Mitchell 3863a7058e45SLawrence Mitchell Output Parameter: 3864bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateInjection()`. 3865a7058e45SLawrence Mitchell 3866a7058e45SLawrence Mitchell Level: developer 3867a7058e45SLawrence Mitchell 38681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateInjection()`, `DMHasCreateRestriction()`, `DMHasCreateInterpolation()` 3869a7058e45SLawrence Mitchell @*/ 3870d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateInjection(DM dm, PetscBool *flg) 3871d71ae5a4SJacob Faibussowitsch { 3872a7058e45SLawrence Mitchell PetscFunctionBegin; 38735a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38744f572ea9SToby Isaac PetscAssertPointer(flg, 2); 3875dbbe0bcdSBarry Smith if (dm->ops->hascreateinjection) PetscUseTypeMethod(dm, hascreateinjection, flg); 3876ad540459SPierre Jolivet else *flg = (dm->ops->createinjection) ? PETSC_TRUE : PETSC_FALSE; 38773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3878a7058e45SLawrence Mitchell } 3879a7058e45SLawrence Mitchell 38800298fd71SBarry Smith PetscFunctionList DMList = NULL; 3881264ace61SBarry Smith PetscBool DMRegisterAllCalled = PETSC_FALSE; 3882264ace61SBarry Smith 3883264ace61SBarry Smith /*@C 3884bb7acecfSBarry Smith DMSetType - Builds a `DM`, for a particular `DM` implementation. 3885264ace61SBarry Smith 388620f4b53cSBarry Smith Collective 3887264ace61SBarry Smith 3888264ace61SBarry Smith Input Parameters: 3889bb7acecfSBarry Smith + dm - The `DM` object 3890bb7acecfSBarry Smith - method - The name of the `DMType`, for example `DMDA`, `DMPLEX` 3891264ace61SBarry Smith 3892264ace61SBarry Smith Options Database Key: 3893bb7acecfSBarry Smith . -dm_type <type> - Sets the `DM` type; use -help for a list of available types 3894264ace61SBarry Smith 3895264ace61SBarry Smith Level: intermediate 3896264ace61SBarry Smith 3897bb7acecfSBarry Smith Note: 38980462cc06SPierre Jolivet Of the `DM` is constructed by directly calling a function to construct a particular `DM`, for example, `DMDACreate2d()` or `DMPlexCreateBoxMesh()` 3899bb7acecfSBarry Smith 39001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMGetType()`, `DMCreate()`, `DMDACreate2d()` 3901264ace61SBarry Smith @*/ 3902d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetType(DM dm, DMType method) 3903d71ae5a4SJacob Faibussowitsch { 3904264ace61SBarry Smith PetscErrorCode (*r)(DM); 3905264ace61SBarry Smith PetscBool match; 3906264ace61SBarry Smith 3907264ace61SBarry Smith PetscFunctionBegin; 3908264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39099566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, method, &match)); 39103ba16761SJacob Faibussowitsch if (match) PetscFunctionReturn(PETSC_SUCCESS); 3911264ace61SBarry Smith 39129566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 39139566063dSJacob Faibussowitsch PetscCall(PetscFunctionListFind(DMList, method, &r)); 39147a8be351SBarry Smith PetscCheck(r, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown DM type: %s", method); 3915264ace61SBarry Smith 3916dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, destroy); 39179566063dSJacob Faibussowitsch PetscCall(PetscMemzero(dm->ops, sizeof(*dm->ops))); 39189566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)dm, method)); 39199566063dSJacob Faibussowitsch PetscCall((*r)(dm)); 39203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3921264ace61SBarry Smith } 3922264ace61SBarry Smith 3923264ace61SBarry Smith /*@C 3924bb7acecfSBarry Smith DMGetType - Gets the `DM` type name (as a string) from the `DM`. 3925264ace61SBarry Smith 3926264ace61SBarry Smith Not Collective 3927264ace61SBarry Smith 3928264ace61SBarry Smith Input Parameter: 3929bb7acecfSBarry Smith . dm - The `DM` 3930264ace61SBarry Smith 3931264ace61SBarry Smith Output Parameter: 3932bb7acecfSBarry Smith . type - The `DMType` name 3933264ace61SBarry Smith 3934264ace61SBarry Smith Level: intermediate 3935264ace61SBarry Smith 39361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMSetType()`, `DMCreate()` 3937264ace61SBarry Smith @*/ 3938d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetType(DM dm, DMType *type) 3939d71ae5a4SJacob Faibussowitsch { 3940264ace61SBarry Smith PetscFunctionBegin; 3941264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39424f572ea9SToby Isaac PetscAssertPointer(type, 2); 39439566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 3944264ace61SBarry Smith *type = ((PetscObject)dm)->type_name; 39453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3946264ace61SBarry Smith } 3947264ace61SBarry Smith 394867a56275SMatthew G Knepley /*@C 3949bb7acecfSBarry Smith DMConvert - Converts a `DM` to another `DM`, either of the same or different type. 395067a56275SMatthew G Knepley 395120f4b53cSBarry Smith Collective 395267a56275SMatthew G Knepley 395367a56275SMatthew G Knepley Input Parameters: 3954bb7acecfSBarry Smith + dm - the `DM` 3955bb7acecfSBarry Smith - newtype - new `DM` type (use "same" for the same type) 395667a56275SMatthew G Knepley 395767a56275SMatthew G Knepley Output Parameter: 3958bb7acecfSBarry Smith . M - pointer to new `DM` 395967a56275SMatthew G Knepley 396020f4b53cSBarry Smith Level: intermediate 396120f4b53cSBarry Smith 396267a56275SMatthew G Knepley Notes: 3963bb7acecfSBarry Smith Cannot be used to convert a sequential `DM` to a parallel or a parallel to sequential, 3964bb7acecfSBarry Smith the MPI communicator of the generated `DM` is always the same as the communicator 3965bb7acecfSBarry Smith of the input `DM`. 396667a56275SMatthew G Knepley 39671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMCreate()`, `DMClone()` 396867a56275SMatthew G Knepley @*/ 3969d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConvert(DM dm, DMType newtype, DM *M) 3970d71ae5a4SJacob Faibussowitsch { 397167a56275SMatthew G Knepley DM B; 397267a56275SMatthew G Knepley char convname[256]; 3973c067b6caSMatthew G. Knepley PetscBool sametype /*, issame */; 397467a56275SMatthew G Knepley 397567a56275SMatthew G Knepley PetscFunctionBegin; 397667a56275SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 397767a56275SMatthew G Knepley PetscValidType(dm, 1); 39784f572ea9SToby Isaac PetscAssertPointer(M, 3); 39799566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, newtype, &sametype)); 39809566063dSJacob Faibussowitsch /* PetscCall(PetscStrcmp(newtype, "same", &issame)); */ 3981c067b6caSMatthew G. Knepley if (sametype) { 3982c067b6caSMatthew G. Knepley *M = dm; 39839566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 39843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3985c067b6caSMatthew G. Knepley } else { 39860298fd71SBarry Smith PetscErrorCode (*conv)(DM, DMType, DM *) = NULL; 398767a56275SMatthew G Knepley 398867a56275SMatthew G Knepley /* 398967a56275SMatthew G Knepley Order of precedence: 399067a56275SMatthew G Knepley 1) See if a specialized converter is known to the current DM. 399167a56275SMatthew G Knepley 2) See if a specialized converter is known to the desired DM class. 399267a56275SMatthew G Knepley 3) See if a good general converter is registered for the desired class 399367a56275SMatthew G Knepley 4) See if a good general converter is known for the current matrix. 399467a56275SMatthew G Knepley 5) Use a really basic converter. 399567a56275SMatthew G Knepley */ 399667a56275SMatthew G Knepley 399767a56275SMatthew G Knepley /* 1) See if a specialized converter is known to the current DM and the desired class */ 39989566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 39999566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 40009566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 40019566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 40029566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 40039566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)dm, convname, &conv)); 400467a56275SMatthew G Knepley if (conv) goto foundconv; 400567a56275SMatthew G Knepley 400667a56275SMatthew G Knepley /* 2) See if a specialized converter is known to the desired DM class. */ 40079566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &B)); 40089566063dSJacob Faibussowitsch PetscCall(DMSetType(B, newtype)); 40099566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 40109566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 40119566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 40129566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 40139566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 40149566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)B, convname, &conv)); 401567a56275SMatthew G Knepley if (conv) { 40169566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 401767a56275SMatthew G Knepley goto foundconv; 401867a56275SMatthew G Knepley } 401967a56275SMatthew G Knepley 402067a56275SMatthew G Knepley #if 0 402167a56275SMatthew G Knepley /* 3) See if a good general converter is registered for the desired class */ 402267a56275SMatthew G Knepley conv = B->ops->convertfrom; 40239566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 402467a56275SMatthew G Knepley if (conv) goto foundconv; 402567a56275SMatthew G Knepley 402667a56275SMatthew G Knepley /* 4) See if a good general converter is known for the current matrix */ 402767a56275SMatthew G Knepley if (dm->ops->convert) { 402867a56275SMatthew G Knepley conv = dm->ops->convert; 402967a56275SMatthew G Knepley } 403067a56275SMatthew G Knepley if (conv) goto foundconv; 403167a56275SMatthew G Knepley #endif 403267a56275SMatthew G Knepley 403367a56275SMatthew G Knepley /* 5) Use a really basic converter. */ 403498921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No conversion possible between DM types %s and %s", ((PetscObject)dm)->type_name, newtype); 403567a56275SMatthew G Knepley 403667a56275SMatthew G Knepley foundconv: 40379566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Convert, dm, 0, 0, 0)); 40389566063dSJacob Faibussowitsch PetscCall((*conv)(dm, newtype, M)); 403912fa691eSMatthew G. Knepley /* Things that are independent of DM type: We should consult DMClone() here */ 404090b157c4SStefano Zampini { 40414fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 40426858538eSMatthew G. Knepley 40434fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 40444fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*M, maxCell, Lstart, L)); 4045c8a6034eSMark (*M)->prealloc_only = dm->prealloc_only; 40469566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->vectype)); 40479566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*M)->vectype)); 40489566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->mattype)); 40499566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*M)->mattype)); 405012fa691eSMatthew G. Knepley } 40519566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Convert, dm, 0, 0, 0)); 405267a56275SMatthew G Knepley } 40539566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)*M)); 40543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 405567a56275SMatthew G Knepley } 4056264ace61SBarry Smith 4057264ace61SBarry Smith /*--------------------------------------------------------------------------------------------------------------------*/ 4058264ace61SBarry Smith 4059264ace61SBarry Smith /*@C 4060bb7acecfSBarry Smith DMRegister - Adds a new `DM` type implementation 40611c84c290SBarry Smith 40621c84c290SBarry Smith Not Collective 40631c84c290SBarry Smith 40641c84c290SBarry Smith Input Parameters: 406520f4b53cSBarry Smith + sname - The name of a new user-defined creation routine 406620f4b53cSBarry Smith - function - The creation routine itself 406720f4b53cSBarry Smith 406820f4b53cSBarry Smith Level: advanced 40691c84c290SBarry Smith 40701c84c290SBarry Smith Notes: 407120f4b53cSBarry Smith `DMRegister()` may be called multiple times to add several user-defined `DM`s 40721c84c290SBarry Smith 407360225df5SJacob Faibussowitsch Example Usage: 40741c84c290SBarry Smith .vb 4075bdf89e91SBarry Smith DMRegister("my_da", MyDMCreate); 40761c84c290SBarry Smith .ve 40771c84c290SBarry Smith 407820f4b53cSBarry Smith Then, your `DM` type can be chosen with the procedural interface via 40791c84c290SBarry Smith .vb 40801c84c290SBarry Smith DMCreate(MPI_Comm, DM *); 40811c84c290SBarry Smith DMSetType(DM,"my_da"); 40821c84c290SBarry Smith .ve 40831c84c290SBarry Smith or at runtime via the option 40841c84c290SBarry Smith .vb 40851c84c290SBarry Smith -da_type my_da 40861c84c290SBarry Smith .ve 4087264ace61SBarry Smith 40881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMSetType()`, `DMRegisterAll()`, `DMRegisterDestroy()` 4089264ace61SBarry Smith @*/ 4090d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRegister(const char sname[], PetscErrorCode (*function)(DM)) 4091d71ae5a4SJacob Faibussowitsch { 4092264ace61SBarry Smith PetscFunctionBegin; 40939566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 40949566063dSJacob Faibussowitsch PetscCall(PetscFunctionListAdd(&DMList, sname, function)); 40953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4096264ace61SBarry Smith } 4097264ace61SBarry Smith 4098b859378eSBarry Smith /*@C 4099bb7acecfSBarry Smith DMLoad - Loads a DM that has been stored in binary with `DMView()`. 4100b859378eSBarry Smith 410120f4b53cSBarry Smith Collective 4102b859378eSBarry Smith 4103b859378eSBarry Smith Input Parameters: 4104bb7acecfSBarry Smith + newdm - the newly loaded `DM`, this needs to have been created with `DMCreate()` or 4105bb7acecfSBarry Smith some related function before a call to `DMLoad()`. 4106bb7acecfSBarry Smith - viewer - binary file viewer, obtained from `PetscViewerBinaryOpen()` or 4107bb7acecfSBarry Smith `PETSCVIEWERHDF5` file viewer, obtained from `PetscViewerHDF5Open()` 4108b859378eSBarry Smith 4109b859378eSBarry Smith Level: intermediate 4110b859378eSBarry Smith 4111b859378eSBarry Smith Notes: 411255849f57SBarry Smith The type is determined by the data in the file, any type set into the DM before this call is ignored. 4113b859378eSBarry Smith 4114bb7acecfSBarry Smith Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` format, one can save multiple `DMPLEX` 4115bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 4116bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 4117cd7e8a5eSksagiyam 41181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewerBinaryOpen()`, `DMView()`, `MatLoad()`, `VecLoad()` 4119b859378eSBarry Smith @*/ 4120d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLoad(DM newdm, PetscViewer viewer) 4121d71ae5a4SJacob Faibussowitsch { 41229331c7a4SMatthew G. Knepley PetscBool isbinary, ishdf5; 4123b859378eSBarry Smith 4124b859378eSBarry Smith PetscFunctionBegin; 4125b859378eSBarry Smith PetscValidHeaderSpecific(newdm, DM_CLASSID, 1); 4126b859378eSBarry Smith PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 41279566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckReadable(viewer)); 41289566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 41299566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 41309566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Load, viewer, 0, 0, 0)); 41319331c7a4SMatthew G. Knepley if (isbinary) { 41329331c7a4SMatthew G. Knepley PetscInt classid; 41339331c7a4SMatthew G. Knepley char type[256]; 4134b859378eSBarry Smith 41359566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &classid, 1, NULL, PETSC_INT)); 41367a8be351SBarry Smith PetscCheck(classid == DM_FILE_CLASSID, PetscObjectComm((PetscObject)newdm), PETSC_ERR_ARG_WRONG, "Not DM next in file, classid found %d", (int)classid); 41379566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, type, 256, NULL, PETSC_CHAR)); 41389566063dSJacob Faibussowitsch PetscCall(DMSetType(newdm, type)); 4139dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 41409331c7a4SMatthew G. Knepley } else if (ishdf5) { 4141dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 41429331c7a4SMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerBinaryOpen() or PetscViewerHDF5Open()"); 41439566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Load, viewer, 0, 0, 0)); 41443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4145b859378eSBarry Smith } 4146b859378eSBarry Smith 41477da65231SMatthew G Knepley /******************************** FEM Support **********************************/ 41487da65231SMatthew G Knepley 41492ecf6ec3SMatthew G. Knepley PetscErrorCode DMPrintCellIndices(PetscInt c, const char name[], PetscInt len, const PetscInt x[]) 41502ecf6ec3SMatthew G. Knepley { 41512ecf6ec3SMatthew G. Knepley PetscInt f; 41522ecf6ec3SMatthew G. Knepley 41532ecf6ec3SMatthew G. Knepley PetscFunctionBegin; 41542ecf6ec3SMatthew G. Knepley PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 41552ecf6ec3SMatthew G. Knepley for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %" PetscInt_FMT " |\n", x[f])); 41562ecf6ec3SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 41572ecf6ec3SMatthew G. Knepley } 41582ecf6ec3SMatthew G. Knepley 4159d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellVector(PetscInt c, const char name[], PetscInt len, const PetscScalar x[]) 4160d71ae5a4SJacob Faibussowitsch { 41611d47ebbbSSatish Balay PetscInt f; 41621b30c384SMatthew G Knepley 41637da65231SMatthew G Knepley PetscFunctionBegin; 416463a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 416548a46eb9SPierre Jolivet for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %g |\n", (double)PetscRealPart(x[f]))); 41663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 41677da65231SMatthew G Knepley } 41687da65231SMatthew G Knepley 41695962854dSMatthew G. Knepley PetscErrorCode DMPrintCellVectorReal(PetscInt c, const char name[], PetscInt len, const PetscReal x[]) 41705962854dSMatthew G. Knepley { 41715962854dSMatthew G. Knepley PetscInt f; 41725962854dSMatthew G. Knepley 41735962854dSMatthew G. Knepley PetscFunctionBegin; 41745962854dSMatthew G. Knepley PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 41755962854dSMatthew G. Knepley for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %g |\n", (double)x[f])); 41765962854dSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 41775962854dSMatthew G. Knepley } 41785962854dSMatthew G. Knepley 4179d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellMatrix(PetscInt c, const char name[], PetscInt rows, PetscInt cols, const PetscScalar A[]) 4180d71ae5a4SJacob Faibussowitsch { 41811b30c384SMatthew G Knepley PetscInt f, g; 41827da65231SMatthew G Knepley 41837da65231SMatthew G Knepley PetscFunctionBegin; 418463a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 41851d47ebbbSSatish Balay for (f = 0; f < rows; ++f) { 41869566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |")); 418748a46eb9SPierre Jolivet for (g = 0; g < cols; ++g) PetscCall(PetscPrintf(PETSC_COMM_SELF, " % 9.5g", (double)PetscRealPart(A[f * cols + g]))); 41889566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |\n")); 41897da65231SMatthew G Knepley } 41903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 41917da65231SMatthew G Knepley } 4192e7c4fc90SDmitry Karpeev 4193d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintLocalVec(DM dm, const char name[], PetscReal tol, Vec X) 4194d71ae5a4SJacob Faibussowitsch { 41950c5b8624SToby Isaac PetscInt localSize, bs; 41960c5b8624SToby Isaac PetscMPIInt size; 41970c5b8624SToby Isaac Vec x, xglob; 41980c5b8624SToby Isaac const PetscScalar *xarray; 4199e759306cSMatthew G. Knepley 4200e759306cSMatthew G. Knepley PetscFunctionBegin; 42019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 42029566063dSJacob Faibussowitsch PetscCall(VecDuplicate(X, &x)); 42039566063dSJacob Faibussowitsch PetscCall(VecCopy(X, x)); 420493ec0da9SPierre Jolivet PetscCall(VecFilter(x, tol)); 42059566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "%s:\n", name)); 42060c5b8624SToby Isaac if (size > 1) { 42079566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(x, &localSize)); 42089566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xarray)); 42099566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize(x, &bs)); 42109566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)dm), bs, localSize, PETSC_DETERMINE, xarray, &xglob)); 42110c5b8624SToby Isaac } else { 42120c5b8624SToby Isaac xglob = x; 42130c5b8624SToby Isaac } 42149566063dSJacob Faibussowitsch PetscCall(VecView(xglob, PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)dm)))); 42150c5b8624SToby Isaac if (size > 1) { 42169566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xglob)); 42179566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xarray)); 42180c5b8624SToby Isaac } 42199566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 42203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4221e759306cSMatthew G. Knepley } 4222e759306cSMatthew G. Knepley 422388ed4aceSMatthew G Knepley /*@ 4224bb7acecfSBarry Smith DMGetSection - Get the `PetscSection` encoding the local data layout for the `DM`. This is equivalent to `DMGetLocalSection()`. Deprecated in v3.12 4225061576a5SJed Brown 4226061576a5SJed Brown Input Parameter: 4227bb7acecfSBarry Smith . dm - The `DM` 4228061576a5SJed Brown 4229061576a5SJed Brown Output Parameter: 4230bb7acecfSBarry Smith . section - The `PetscSection` 4231061576a5SJed Brown 423220f4b53cSBarry Smith Options Database Key: 4233bb7acecfSBarry Smith . -dm_petscsection_view - View the `PetscSection` created by the `DM` 4234061576a5SJed Brown 4235061576a5SJed Brown Level: advanced 4236061576a5SJed Brown 4237061576a5SJed Brown Notes: 4238bb7acecfSBarry Smith Use `DMGetLocalSection()` in new code. 4239061576a5SJed Brown 4240bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 4241061576a5SJed Brown 42421cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetLocalSection()`, `DMSetLocalSection()`, `DMGetGlobalSection()` 4243061576a5SJed Brown @*/ 4244d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSection(DM dm, PetscSection *section) 4245d71ae5a4SJacob Faibussowitsch { 4246061576a5SJed Brown PetscFunctionBegin; 42479566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, section)); 42483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4249061576a5SJed Brown } 4250061576a5SJed Brown 4251061576a5SJed Brown /*@ 4252bb7acecfSBarry Smith DMGetLocalSection - Get the `PetscSection` encoding the local data layout for the `DM`. 425388ed4aceSMatthew G Knepley 425488ed4aceSMatthew G Knepley Input Parameter: 4255bb7acecfSBarry Smith . dm - The `DM` 425688ed4aceSMatthew G Knepley 425788ed4aceSMatthew G Knepley Output Parameter: 4258bb7acecfSBarry Smith . section - The `PetscSection` 425988ed4aceSMatthew G Knepley 426020f4b53cSBarry Smith Options Database Key: 4261bb7acecfSBarry Smith . -dm_petscsection_view - View the section created by the `DM` 4262e5893cccSMatthew G. Knepley 426388ed4aceSMatthew G Knepley Level: intermediate 426488ed4aceSMatthew G Knepley 4265bb7acecfSBarry Smith Note: 4266bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 426788ed4aceSMatthew G Knepley 42681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetGlobalSection()` 426988ed4aceSMatthew G Knepley @*/ 4270d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalSection(DM dm, PetscSection *section) 4271d71ae5a4SJacob Faibussowitsch { 427288ed4aceSMatthew G Knepley PetscFunctionBegin; 427388ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 42744f572ea9SToby Isaac PetscAssertPointer(section, 2); 42751bb6d2a8SBarry Smith if (!dm->localSection && dm->ops->createlocalsection) { 4276e5e52638SMatthew G. Knepley PetscInt d; 4277e5e52638SMatthew G. Knepley 427845480ffeSMatthew G. Knepley if (dm->setfromoptionscalled) { 427945480ffeSMatthew G. Knepley PetscObject obj = (PetscObject)dm; 428045480ffeSMatthew G. Knepley PetscViewer viewer; 428145480ffeSMatthew G. Knepley PetscViewerFormat format; 428245480ffeSMatthew G. Knepley PetscBool flg; 428345480ffeSMatthew G. Knepley 42849566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetViewer(PetscObjectComm(obj), obj->options, obj->prefix, "-dm_petscds_view", &viewer, &format, &flg)); 42859566063dSJacob Faibussowitsch if (flg) PetscCall(PetscViewerPushFormat(viewer, format)); 428645480ffeSMatthew G. Knepley for (d = 0; d < dm->Nds; ++d) { 42879566063dSJacob Faibussowitsch PetscCall(PetscDSSetFromOptions(dm->probs[d].ds)); 42889566063dSJacob Faibussowitsch if (flg) PetscCall(PetscDSView(dm->probs[d].ds, viewer)); 428945480ffeSMatthew G. Knepley } 429045480ffeSMatthew G. Knepley if (flg) { 42919566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 42929566063dSJacob Faibussowitsch PetscCall(PetscViewerPopFormat(viewer)); 4293cd791dc2SBarry Smith PetscCall(PetscOptionsRestoreViewer(&viewer)); 429445480ffeSMatthew G. Knepley } 429545480ffeSMatthew G. Knepley } 4296dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalsection); 42979566063dSJacob Faibussowitsch if (dm->localSection) PetscCall(PetscObjectViewFromOptions((PetscObject)dm->localSection, NULL, "-dm_petscsection_view")); 42982f0f8703SMatthew G. Knepley } 42991bb6d2a8SBarry Smith *section = dm->localSection; 43003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 430188ed4aceSMatthew G Knepley } 430288ed4aceSMatthew G Knepley 430388ed4aceSMatthew G Knepley /*@ 4304bb7acecfSBarry Smith DMSetSection - Set the `PetscSection` encoding the local data layout for the `DM`. This is equivalent to `DMSetLocalSection()`. Deprecated in v3.12 4305061576a5SJed Brown 4306061576a5SJed Brown Input Parameters: 4307bb7acecfSBarry Smith + dm - The `DM` 4308bb7acecfSBarry Smith - section - The `PetscSection` 4309061576a5SJed Brown 4310061576a5SJed Brown Level: advanced 4311061576a5SJed Brown 4312061576a5SJed Brown Notes: 4313bb7acecfSBarry Smith Use `DMSetLocalSection()` in new code. 4314061576a5SJed Brown 4315bb7acecfSBarry Smith Any existing `PetscSection` will be destroyed 4316061576a5SJed Brown 43171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()`, `DMSetGlobalSection()` 4318061576a5SJed Brown @*/ 4319d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSection(DM dm, PetscSection section) 4320d71ae5a4SJacob Faibussowitsch { 4321061576a5SJed Brown PetscFunctionBegin; 43229566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm, section)); 43233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4324061576a5SJed Brown } 4325061576a5SJed Brown 4326061576a5SJed Brown /*@ 4327bb7acecfSBarry Smith DMSetLocalSection - Set the `PetscSection` encoding the local data layout for the `DM`. 432888ed4aceSMatthew G Knepley 432988ed4aceSMatthew G Knepley Input Parameters: 4330bb7acecfSBarry Smith + dm - The `DM` 4331bb7acecfSBarry Smith - section - The `PetscSection` 433288ed4aceSMatthew G Knepley 433388ed4aceSMatthew G Knepley Level: intermediate 433488ed4aceSMatthew G Knepley 4335bb7acecfSBarry Smith Note: 4336bb7acecfSBarry Smith Any existing Section will be destroyed 433788ed4aceSMatthew G Knepley 43381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMSetGlobalSection()` 433988ed4aceSMatthew G Knepley @*/ 4340d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLocalSection(DM dm, PetscSection section) 4341d71ae5a4SJacob Faibussowitsch { 4342c473ab19SMatthew G. Knepley PetscInt numFields = 0; 4343af122d2aSMatthew G Knepley PetscInt f; 434488ed4aceSMatthew G Knepley 434588ed4aceSMatthew G Knepley PetscFunctionBegin; 434688ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4347b9d85ea2SLisandro Dalcin if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 43489566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 43499566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->localSection)); 43501bb6d2a8SBarry Smith dm->localSection = section; 43519566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(dm->localSection, &numFields)); 4352af122d2aSMatthew G Knepley if (numFields) { 43539566063dSJacob Faibussowitsch PetscCall(DMSetNumFields(dm, numFields)); 4354af122d2aSMatthew G Knepley for (f = 0; f < numFields; ++f) { 43550f21e855SMatthew G. Knepley PetscObject disc; 4356af122d2aSMatthew G Knepley const char *name; 4357af122d2aSMatthew G Knepley 43589566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(dm->localSection, f, &name)); 43599566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &disc)); 43609566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName(disc, name)); 4361af122d2aSMatthew G Knepley } 4362af122d2aSMatthew G Knepley } 436350350c8eSStefano Zampini /* The global section and the SectionSF will be rebuilt 436450350c8eSStefano Zampini in the next call to DMGetGlobalSection() and DMGetSectionSF(). */ 43659566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 436650350c8eSStefano Zampini PetscCall(PetscSFDestroy(&dm->sectionSF)); 436752947b74SStefano Zampini PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 436850350c8eSStefano Zampini 436950350c8eSStefano Zampini /* Clear scratch vectors */ 437050350c8eSStefano Zampini PetscCall(DMClearGlobalVectors(dm)); 437150350c8eSStefano Zampini PetscCall(DMClearLocalVectors(dm)); 437250350c8eSStefano Zampini PetscCall(DMClearNamedGlobalVectors(dm)); 437350350c8eSStefano Zampini PetscCall(DMClearNamedLocalVectors(dm)); 43743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 437588ed4aceSMatthew G Knepley } 437688ed4aceSMatthew G Knepley 4377adc21957SMatthew G. Knepley /*@C 4378adc21957SMatthew G. Knepley DMCreateSectionPermutation - Create a permutation of the `PetscSection` chart and optionally a blokc structure. 4379adc21957SMatthew G. Knepley 4380adc21957SMatthew G. Knepley Input Parameter: 4381adc21957SMatthew G. Knepley . dm - The `DM` 4382adc21957SMatthew G. Knepley 4383adc21957SMatthew G. Knepley Output Parameter: 4384adc21957SMatthew G. Knepley + perm - A permutation of the mesh points in the chart 4385adc21957SMatthew G. Knepley - blockStarts - A high bit is set for the point that begins every block, or NULL for default blocking 4386adc21957SMatthew G. Knepley 4387adc21957SMatthew G. Knepley Level: developer 4388adc21957SMatthew G. Knepley 4389adc21957SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMGetGlobalSection()` 4390adc21957SMatthew G. Knepley @*/ 4391adc21957SMatthew G. Knepley PetscErrorCode DMCreateSectionPermutation(DM dm, IS *perm, PetscBT *blockStarts) 4392adc21957SMatthew G. Knepley { 4393adc21957SMatthew G. Knepley PetscFunctionBegin; 4394adc21957SMatthew G. Knepley *perm = NULL; 4395adc21957SMatthew G. Knepley *blockStarts = NULL; 4396adc21957SMatthew G. Knepley PetscTryTypeMethod(dm, createsectionpermutation, perm, blockStarts); 4397adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 4398adc21957SMatthew G. Knepley } 4399adc21957SMatthew G. Knepley 44009435951eSToby Isaac /*@ 4401bb7acecfSBarry Smith DMGetDefaultConstraints - Get the `PetscSection` and `Mat` that specify the local constraint interpolation. See `DMSetDefaultConstraints()` for a description of the purpose of constraint interpolation. 44029435951eSToby Isaac 440320f4b53cSBarry Smith not Collective 4404e228b242SToby Isaac 44059435951eSToby Isaac Input Parameter: 4406bb7acecfSBarry Smith . dm - The `DM` 44079435951eSToby Isaac 4408d8d19677SJose E. Roman Output Parameters: 440920f4b53cSBarry Smith + section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Returns `NULL` if there are no local constraints. 441020f4b53cSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section. Returns `NULL` if there are no local constraints. 441179769bd5SJed Brown - bias - Vector containing bias to be added to constrained dofs 44129435951eSToby Isaac 44139435951eSToby Isaac Level: advanced 44149435951eSToby Isaac 4415bb7acecfSBarry Smith Note: 4416bb7acecfSBarry Smith This gets borrowed references, so the user should not destroy the `PetscSection`, `Mat`, or `Vec`. 44179435951eSToby Isaac 44181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDefaultConstraints()` 44199435951eSToby Isaac @*/ 4420d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDefaultConstraints(DM dm, PetscSection *section, Mat *mat, Vec *bias) 4421d71ae5a4SJacob Faibussowitsch { 44229435951eSToby Isaac PetscFunctionBegin; 44239435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4424dbbe0bcdSBarry Smith if (!dm->defaultConstraint.section && !dm->defaultConstraint.mat && dm->ops->createdefaultconstraints) PetscUseTypeMethod(dm, createdefaultconstraints); 44253b8ba7d1SJed Brown if (section) *section = dm->defaultConstraint.section; 44263b8ba7d1SJed Brown if (mat) *mat = dm->defaultConstraint.mat; 442779769bd5SJed Brown if (bias) *bias = dm->defaultConstraint.bias; 44283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44299435951eSToby Isaac } 44309435951eSToby Isaac 44319435951eSToby Isaac /*@ 4432bb7acecfSBarry Smith DMSetDefaultConstraints - Set the `PetscSection` and `Mat` that specify the local constraint interpolation. 44339435951eSToby Isaac 443420f4b53cSBarry Smith Collective 4435e228b242SToby Isaac 44369435951eSToby Isaac Input Parameters: 4437bb7acecfSBarry Smith + dm - The `DM` 4438bb7acecfSBarry Smith . section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 443920f4b53cSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section: `NULL` indicates no constraints. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 444020f4b53cSBarry Smith - bias - A bias vector to be added to constrained values in the local vector. `NULL` indicates no bias. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 44419435951eSToby Isaac 44429435951eSToby Isaac Level: advanced 44439435951eSToby Isaac 444420f4b53cSBarry Smith Notes: 444520f4b53cSBarry Smith If a constraint matrix is specified, then it is applied during `DMGlobalToLocalEnd()` when mode is `INSERT_VALUES`, `INSERT_BC_VALUES`, or `INSERT_ALL_VALUES`. Without a constraint matrix, the local vector l returned by `DMGlobalToLocalEnd()` contains values that have been scattered from a global vector without modification; with a constraint matrix A, l is modified by computing c = A * l + bias, l[s[i]] = c[i], where the scatter s is defined by the `PetscSection` returned by `DMGetDefaultConstraints()`. 444620f4b53cSBarry Smith 444720f4b53cSBarry Smith If a constraint matrix is specified, then its adjoint is applied during `DMLocalToGlobalBegin()` when mode is `ADD_VALUES`, `ADD_BC_VALUES`, or `ADD_ALL_VALUES`. Without a constraint matrix, the local vector l is accumulated into a global vector without modification; with a constraint matrix A, l is first modified by computing c[i] = l[s[i]], l[s[i]] = 0, l = l + A'*c, which is the adjoint of the operation described above. Any bias, if specified, is ignored when accumulating. 444820f4b53cSBarry Smith 4449bb7acecfSBarry Smith This increments the references of the `PetscSection`, `Mat`, and `Vec`, so they user can destroy them. 44509435951eSToby Isaac 44511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDefaultConstraints()` 44529435951eSToby Isaac @*/ 4453d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDefaultConstraints(DM dm, PetscSection section, Mat mat, Vec bias) 4454d71ae5a4SJacob Faibussowitsch { 4455e228b242SToby Isaac PetscMPIInt result; 44569435951eSToby Isaac 44579435951eSToby Isaac PetscFunctionBegin; 44589435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4459e228b242SToby Isaac if (section) { 4460e228b242SToby Isaac PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 44619566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)section), &result)); 44627a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint section must have local communicator"); 4463e228b242SToby Isaac } 4464e228b242SToby Isaac if (mat) { 4465e228b242SToby Isaac PetscValidHeaderSpecific(mat, MAT_CLASSID, 3); 44669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)mat), &result)); 44677a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint matrix must have local communicator"); 4468e228b242SToby Isaac } 446979769bd5SJed Brown if (bias) { 447079769bd5SJed Brown PetscValidHeaderSpecific(bias, VEC_CLASSID, 4); 44719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)bias), &result)); 447279769bd5SJed Brown PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint bias must have local communicator"); 447379769bd5SJed Brown } 44749566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 44759566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->defaultConstraint.section)); 44763b8ba7d1SJed Brown dm->defaultConstraint.section = section; 44779566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mat)); 44789566063dSJacob Faibussowitsch PetscCall(MatDestroy(&dm->defaultConstraint.mat)); 44793b8ba7d1SJed Brown dm->defaultConstraint.mat = mat; 44809566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)bias)); 44819566063dSJacob Faibussowitsch PetscCall(VecDestroy(&dm->defaultConstraint.bias)); 448279769bd5SJed Brown dm->defaultConstraint.bias = bias; 44833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44849435951eSToby Isaac } 44859435951eSToby Isaac 4486497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 4487507e4973SMatthew G. Knepley /* 4488bb7acecfSBarry Smith DMDefaultSectionCheckConsistency - Check the consistentcy of the global and local sections. Generates and error if they are not consistent. 4489507e4973SMatthew G. Knepley 4490507e4973SMatthew G. Knepley Input Parameters: 4491bb7acecfSBarry Smith + dm - The `DM` 4492bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4493bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 4494507e4973SMatthew G. Knepley 4495507e4973SMatthew G. Knepley Level: intermediate 4496507e4973SMatthew G. Knepley 44971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()` 4498507e4973SMatthew G. Knepley */ 4499d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(DM dm, PetscSection localSection, PetscSection globalSection) 4500d71ae5a4SJacob Faibussowitsch { 4501507e4973SMatthew G. Knepley MPI_Comm comm; 4502507e4973SMatthew G. Knepley PetscLayout layout; 4503507e4973SMatthew G. Knepley const PetscInt *ranges; 4504507e4973SMatthew G. Knepley PetscInt pStart, pEnd, p, nroots; 4505507e4973SMatthew G. Knepley PetscMPIInt size, rank; 4506507e4973SMatthew G. Knepley PetscBool valid = PETSC_TRUE, gvalid; 4507507e4973SMatthew G. Knepley 4508507e4973SMatthew G. Knepley PetscFunctionBegin; 45099566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 4510507e4973SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45119566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 45129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 45139566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(globalSection, &pStart, &pEnd)); 45149566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &nroots)); 45159566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &layout)); 45169566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(layout, 1)); 45179566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(layout, nroots)); 45189566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(layout)); 45199566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(layout, &ranges)); 4520507e4973SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 4521f741bcd2SMatthew G. Knepley PetscInt dof, cdof, off, gdof, gcdof, goff, gsize, d; 4522507e4973SMatthew G. Knepley 45239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(localSection, p, &dof)); 45249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(localSection, p, &off)); 45259566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(localSection, p, &cdof)); 45269566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(globalSection, p, &gdof)); 45279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(globalSection, p, &gcdof)); 45289566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalSection, p, &goff)); 4529507e4973SMatthew G. Knepley if (!gdof) continue; /* Censored point */ 45309371c9d4SSatish Balay if ((gdof < 0 ? -(gdof + 1) : gdof) != dof) { 45319371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local dof %" PetscInt_FMT "\n", rank, gdof, p, dof)); 45329371c9d4SSatish Balay valid = PETSC_FALSE; 45339371c9d4SSatish Balay } 45349371c9d4SSatish Balay if (gcdof && (gcdof != cdof)) { 45359371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global constraints %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local constraints %" PetscInt_FMT "\n", rank, gcdof, p, cdof)); 45369371c9d4SSatish Balay valid = PETSC_FALSE; 45379371c9d4SSatish Balay } 4538507e4973SMatthew G. Knepley if (gdof < 0) { 4539507e4973SMatthew G. Knepley gsize = gdof < 0 ? -(gdof + 1) - gcdof : gdof - gcdof; 4540507e4973SMatthew G. Knepley for (d = 0; d < gsize; ++d) { 4541507e4973SMatthew G. Knepley PetscInt offset = -(goff + 1) + d, r; 4542507e4973SMatthew G. Knepley 45439566063dSJacob Faibussowitsch PetscCall(PetscFindInt(offset, size + 1, ranges, &r)); 4544507e4973SMatthew G. Knepley if (r < 0) r = -(r + 2); 45459371c9d4SSatish Balay if ((r < 0) || (r >= size)) { 45469371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Point %" PetscInt_FMT " mapped to invalid process %" PetscInt_FMT " (%" PetscInt_FMT ", %" PetscInt_FMT ")\n", rank, p, r, gdof, goff)); 45479371c9d4SSatish Balay valid = PETSC_FALSE; 45489371c9d4SSatish Balay break; 45499371c9d4SSatish Balay } 4550507e4973SMatthew G. Knepley } 4551507e4973SMatthew G. Knepley } 4552507e4973SMatthew G. Knepley } 45539566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&layout)); 45549566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, NULL)); 45551c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&valid, &gvalid, 1, MPIU_BOOL, MPI_LAND, comm)); 4556507e4973SMatthew G. Knepley if (!gvalid) { 45579566063dSJacob Faibussowitsch PetscCall(DMView(dm, NULL)); 4558507e4973SMatthew G. Knepley SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Inconsistent local and global sections"); 4559507e4973SMatthew G. Knepley } 45603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4561507e4973SMatthew G. Knepley } 4562f741bcd2SMatthew G. Knepley #endif 4563507e4973SMatthew G. Knepley 45645f06a3ddSJed Brown static PetscErrorCode DMGetIsoperiodicPointSF_Internal(DM dm, PetscSF *sf) 45656725e60dSJed Brown { 45666725e60dSJed Brown PetscErrorCode (*f)(DM, PetscSF *); 45674d86920dSPierre Jolivet 45686725e60dSJed Brown PetscFunctionBegin; 45696725e60dSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45704f572ea9SToby Isaac PetscAssertPointer(sf, 2); 45715f06a3ddSJed Brown PetscCall(PetscObjectQueryFunction((PetscObject)dm, "DMGetIsoperiodicPointSF_C", &f)); 45726725e60dSJed Brown if (f) PetscCall(f(dm, sf)); 45736725e60dSJed Brown else *sf = dm->sf; 45743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 45756725e60dSJed Brown } 45766725e60dSJed Brown 457788ed4aceSMatthew G Knepley /*@ 4578bb7acecfSBarry Smith DMGetGlobalSection - Get the `PetscSection` encoding the global data layout for the `DM`. 457988ed4aceSMatthew G Knepley 458020f4b53cSBarry Smith Collective 45818b1ab98fSJed Brown 458288ed4aceSMatthew G Knepley Input Parameter: 4583bb7acecfSBarry Smith . dm - The `DM` 458488ed4aceSMatthew G Knepley 458588ed4aceSMatthew G Knepley Output Parameter: 4586bb7acecfSBarry Smith . section - The `PetscSection` 458788ed4aceSMatthew G Knepley 458888ed4aceSMatthew G Knepley Level: intermediate 458988ed4aceSMatthew G Knepley 4590bb7acecfSBarry Smith Note: 4591bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 459288ed4aceSMatthew G Knepley 45931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()` 459488ed4aceSMatthew G Knepley @*/ 4595d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetGlobalSection(DM dm, PetscSection *section) 4596d71ae5a4SJacob Faibussowitsch { 459788ed4aceSMatthew G Knepley PetscFunctionBegin; 459888ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45994f572ea9SToby Isaac PetscAssertPointer(section, 2); 46001bb6d2a8SBarry Smith if (!dm->globalSection) { 4601fd59a867SMatthew G. Knepley PetscSection s; 46026725e60dSJed Brown PetscSF sf; 4603fd59a867SMatthew G. Knepley 46049566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 46057a8be351SBarry Smith PetscCheck(s, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a default PetscSection in order to create a global PetscSection"); 46067a8be351SBarry Smith PetscCheck(dm->sf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a point PetscSF in order to create a global PetscSection"); 46075f06a3ddSJed Brown PetscCall(DMGetIsoperiodicPointSF_Internal(dm, &sf)); 4608eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionCreateGlobalSection(s, sf, PETSC_TRUE, PETSC_FALSE, PETSC_FALSE, &dm->globalSection)); 46099566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&dm->map)); 46109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetValueLayout(PetscObjectComm((PetscObject)dm), dm->globalSection, &dm->map)); 46119566063dSJacob Faibussowitsch PetscCall(PetscSectionViewFromOptions(dm->globalSection, NULL, "-global_section_view")); 461288ed4aceSMatthew G Knepley } 46131bb6d2a8SBarry Smith *section = dm->globalSection; 46143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 461588ed4aceSMatthew G Knepley } 461688ed4aceSMatthew G Knepley 4617b21d0597SMatthew G Knepley /*@ 4618bb7acecfSBarry Smith DMSetGlobalSection - Set the `PetscSection` encoding the global data layout for the `DM`. 4619b21d0597SMatthew G Knepley 4620b21d0597SMatthew G Knepley Input Parameters: 4621bb7acecfSBarry Smith + dm - The `DM` 46222fe279fdSBarry Smith - section - The PetscSection, or `NULL` 4623b21d0597SMatthew G Knepley 4624b21d0597SMatthew G Knepley Level: intermediate 4625b21d0597SMatthew G Knepley 4626bb7acecfSBarry Smith Note: 4627bb7acecfSBarry Smith Any existing `PetscSection` will be destroyed 4628b21d0597SMatthew G Knepley 46291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetGlobalSection()`, `DMSetLocalSection()` 4630b21d0597SMatthew G Knepley @*/ 4631d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetGlobalSection(DM dm, PetscSection section) 4632d71ae5a4SJacob Faibussowitsch { 4633b21d0597SMatthew G Knepley PetscFunctionBegin; 4634b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46355080bbdbSMatthew G Knepley if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 46369566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 46379566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 46381bb6d2a8SBarry Smith dm->globalSection = section; 4639497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 46409566063dSJacob Faibussowitsch if (section) PetscCall(DMDefaultSectionCheckConsistency_Internal(dm, dm->localSection, section)); 4641507e4973SMatthew G. Knepley #endif 464250350c8eSStefano Zampini /* Clear global scratch vectors and sectionSF */ 464350350c8eSStefano Zampini PetscCall(PetscSFDestroy(&dm->sectionSF)); 464452947b74SStefano Zampini PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 464550350c8eSStefano Zampini PetscCall(DMClearGlobalVectors(dm)); 464650350c8eSStefano Zampini PetscCall(DMClearNamedGlobalVectors(dm)); 46473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4648b21d0597SMatthew G Knepley } 4649b21d0597SMatthew G Knepley 465088ed4aceSMatthew G Knepley /*@ 4651bb7acecfSBarry Smith DMGetSectionSF - Get the `PetscSF` encoding the parallel dof overlap for the `DM`. If it has not been set, 4652bb7acecfSBarry Smith it is created from the default `PetscSection` layouts in the `DM`. 465388ed4aceSMatthew G Knepley 465488ed4aceSMatthew G Knepley Input Parameter: 4655bb7acecfSBarry Smith . dm - The `DM` 465688ed4aceSMatthew G Knepley 465788ed4aceSMatthew G Knepley Output Parameter: 4658bb7acecfSBarry Smith . sf - The `PetscSF` 465988ed4aceSMatthew G Knepley 466088ed4aceSMatthew G Knepley Level: intermediate 466188ed4aceSMatthew G Knepley 4662bb7acecfSBarry Smith Note: 4663bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 466488ed4aceSMatthew G Knepley 46651cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetSectionSF()`, `DMCreateSectionSF()` 466688ed4aceSMatthew G Knepley @*/ 4667d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSectionSF(DM dm, PetscSF *sf) 4668d71ae5a4SJacob Faibussowitsch { 466988ed4aceSMatthew G Knepley PetscInt nroots; 467088ed4aceSMatthew G Knepley 467188ed4aceSMatthew G Knepley PetscFunctionBegin; 467288ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46734f572ea9SToby Isaac PetscAssertPointer(sf, 2); 467448a46eb9SPierre Jolivet if (!dm->sectionSF) PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 46759566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sectionSF, &nroots, NULL, NULL, NULL)); 467688ed4aceSMatthew G Knepley if (nroots < 0) { 467788ed4aceSMatthew G Knepley PetscSection section, gSection; 467888ed4aceSMatthew G Knepley 46799566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 468031ea6d37SMatthew G Knepley if (section) { 46819566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gSection)); 46829566063dSJacob Faibussowitsch PetscCall(DMCreateSectionSF(dm, section, gSection)); 468331ea6d37SMatthew G Knepley } else { 46840298fd71SBarry Smith *sf = NULL; 46853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 468631ea6d37SMatthew G Knepley } 468788ed4aceSMatthew G Knepley } 46881bb6d2a8SBarry Smith *sf = dm->sectionSF; 46893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 469088ed4aceSMatthew G Knepley } 469188ed4aceSMatthew G Knepley 469288ed4aceSMatthew G Knepley /*@ 4693bb7acecfSBarry Smith DMSetSectionSF - Set the `PetscSF` encoding the parallel dof overlap for the `DM` 469488ed4aceSMatthew G Knepley 469588ed4aceSMatthew G Knepley Input Parameters: 4696bb7acecfSBarry Smith + dm - The `DM` 4697bb7acecfSBarry Smith - sf - The `PetscSF` 469888ed4aceSMatthew G Knepley 469988ed4aceSMatthew G Knepley Level: intermediate 470088ed4aceSMatthew G Knepley 4701bb7acecfSBarry Smith Note: 4702bb7acecfSBarry Smith Any previous `PetscSF` is destroyed 470388ed4aceSMatthew G Knepley 47041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMCreateSectionSF()` 470588ed4aceSMatthew G Knepley @*/ 4706d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSectionSF(DM dm, PetscSF sf) 4707d71ae5a4SJacob Faibussowitsch { 470888ed4aceSMatthew G Knepley PetscFunctionBegin; 470988ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4710b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 47119566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 47129566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sectionSF)); 47131bb6d2a8SBarry Smith dm->sectionSF = sf; 47143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 471588ed4aceSMatthew G Knepley } 471688ed4aceSMatthew G Knepley 471788ed4aceSMatthew G Knepley /*@C 4718bb7acecfSBarry Smith DMCreateSectionSF - Create the `PetscSF` encoding the parallel dof overlap for the `DM` based upon the `PetscSection`s 471988ed4aceSMatthew G Knepley describing the data layout. 472088ed4aceSMatthew G Knepley 472188ed4aceSMatthew G Knepley Input Parameters: 4722bb7acecfSBarry Smith + dm - The `DM` 4723bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4724bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 472588ed4aceSMatthew G Knepley 47261bb6d2a8SBarry Smith Level: developer 47271bb6d2a8SBarry Smith 4728bb7acecfSBarry Smith Note: 4729bb7acecfSBarry Smith One usually uses `DMGetSectionSF()` to obtain the `PetscSF` 4730bb7acecfSBarry Smith 473160225df5SJacob Faibussowitsch Developer Notes: 4732bb7acecfSBarry Smith Since this routine has for arguments the two sections from the `DM` and puts the resulting `PetscSF` 4733bb7acecfSBarry Smith directly into the `DM`, perhaps this function should not take the local and global sections as 4734bb7acecfSBarry Smith input and should just obtain them from the `DM`? 47351bb6d2a8SBarry Smith 47361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMGetLocalSection()`, `DMGetGlobalSection()` 473788ed4aceSMatthew G Knepley @*/ 4738d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSectionSF(DM dm, PetscSection localSection, PetscSection globalSection) 4739d71ae5a4SJacob Faibussowitsch { 474088ed4aceSMatthew G Knepley PetscFunctionBegin; 474188ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47429566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphSection(dm->sectionSF, localSection, globalSection)); 47433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 474488ed4aceSMatthew G Knepley } 4745af122d2aSMatthew G Knepley 4746b21d0597SMatthew G Knepley /*@ 4747bb7acecfSBarry Smith DMGetPointSF - Get the `PetscSF` encoding the parallel section point overlap for the `DM`. 4748bb7acecfSBarry Smith 4749bb7acecfSBarry Smith Not collective but the resulting `PetscSF` is collective 4750b21d0597SMatthew G Knepley 4751b21d0597SMatthew G Knepley Input Parameter: 4752bb7acecfSBarry Smith . dm - The `DM` 4753b21d0597SMatthew G Knepley 4754b21d0597SMatthew G Knepley Output Parameter: 4755bb7acecfSBarry Smith . sf - The `PetscSF` 4756b21d0597SMatthew G Knepley 4757b21d0597SMatthew G Knepley Level: intermediate 4758b21d0597SMatthew G Knepley 4759bb7acecfSBarry Smith Note: 4760bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 4761b21d0597SMatthew G Knepley 47621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4763b21d0597SMatthew G Knepley @*/ 4764d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetPointSF(DM dm, PetscSF *sf) 4765d71ae5a4SJacob Faibussowitsch { 4766b21d0597SMatthew G Knepley PetscFunctionBegin; 4767b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47684f572ea9SToby Isaac PetscAssertPointer(sf, 2); 4769b21d0597SMatthew G Knepley *sf = dm->sf; 47703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4771b21d0597SMatthew G Knepley } 4772b21d0597SMatthew G Knepley 4773057b4bcdSMatthew G Knepley /*@ 4774bb7acecfSBarry Smith DMSetPointSF - Set the `PetscSF` encoding the parallel section point overlap for the `DM`. 4775bb7acecfSBarry Smith 477620f4b53cSBarry Smith Collective 4777057b4bcdSMatthew G Knepley 4778057b4bcdSMatthew G Knepley Input Parameters: 4779bb7acecfSBarry Smith + dm - The `DM` 4780bb7acecfSBarry Smith - sf - The `PetscSF` 4781057b4bcdSMatthew G Knepley 4782057b4bcdSMatthew G Knepley Level: intermediate 4783057b4bcdSMatthew G Knepley 47841cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4785057b4bcdSMatthew G Knepley @*/ 4786d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetPointSF(DM dm, PetscSF sf) 4787d71ae5a4SJacob Faibussowitsch { 4788057b4bcdSMatthew G Knepley PetscFunctionBegin; 4789057b4bcdSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4790b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 47919566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 47929566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sf)); 4793057b4bcdSMatthew G Knepley dm->sf = sf; 47943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4795057b4bcdSMatthew G Knepley } 4796057b4bcdSMatthew G Knepley 47974f37162bSMatthew G. Knepley /*@ 4798bb7acecfSBarry Smith DMGetNaturalSF - Get the `PetscSF` encoding the map back to the original mesh ordering 47994f37162bSMatthew G. Knepley 48004f37162bSMatthew G. Knepley Input Parameter: 4801bb7acecfSBarry Smith . dm - The `DM` 48024f37162bSMatthew G. Knepley 48034f37162bSMatthew G. Knepley Output Parameter: 4804bb7acecfSBarry Smith . sf - The `PetscSF` 48054f37162bSMatthew G. Knepley 48064f37162bSMatthew G. Knepley Level: intermediate 48074f37162bSMatthew G. Knepley 4808bb7acecfSBarry Smith Note: 4809bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 48104f37162bSMatthew G. Knepley 48111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 48124f37162bSMatthew G. Knepley @*/ 4813d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNaturalSF(DM dm, PetscSF *sf) 4814d71ae5a4SJacob Faibussowitsch { 48154f37162bSMatthew G. Knepley PetscFunctionBegin; 48164f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48174f572ea9SToby Isaac PetscAssertPointer(sf, 2); 48184f37162bSMatthew G. Knepley *sf = dm->sfNatural; 48193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48204f37162bSMatthew G. Knepley } 48214f37162bSMatthew G. Knepley 48224f37162bSMatthew G. Knepley /*@ 48234f37162bSMatthew G. Knepley DMSetNaturalSF - Set the PetscSF encoding the map back to the original mesh ordering 48244f37162bSMatthew G. Knepley 48254f37162bSMatthew G. Knepley Input Parameters: 48264f37162bSMatthew G. Knepley + dm - The DM 48274f37162bSMatthew G. Knepley - sf - The PetscSF 48284f37162bSMatthew G. Knepley 48294f37162bSMatthew G. Knepley Level: intermediate 48304f37162bSMatthew G. Knepley 48311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 48324f37162bSMatthew G. Knepley @*/ 4833d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNaturalSF(DM dm, PetscSF sf) 4834d71ae5a4SJacob Faibussowitsch { 48354f37162bSMatthew G. Knepley PetscFunctionBegin; 48364f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48374f37162bSMatthew G. Knepley if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 48389566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 48399566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sfNatural)); 48404f37162bSMatthew G. Knepley dm->sfNatural = sf; 48413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48424f37162bSMatthew G. Knepley } 48434f37162bSMatthew G. Knepley 4844d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetDefaultAdjacency_Private(DM dm, PetscInt f, PetscObject disc) 4845d71ae5a4SJacob Faibussowitsch { 484634aa8a36SMatthew G. Knepley PetscClassId id; 484734aa8a36SMatthew G. Knepley 484834aa8a36SMatthew G. Knepley PetscFunctionBegin; 48499566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 485034aa8a36SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 48519566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 485234aa8a36SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 48539566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_TRUE, PETSC_FALSE)); 485417c1d62eSMatthew G. Knepley } else { 48559566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 485634aa8a36SMatthew G. Knepley } 48573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 485834aa8a36SMatthew G. Knepley } 485934aa8a36SMatthew G. Knepley 4860d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFieldEnlarge_Static(DM dm, PetscInt NfNew) 4861d71ae5a4SJacob Faibussowitsch { 486244a7f3ddSMatthew G. Knepley RegionField *tmpr; 486344a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf, f; 486444a7f3ddSMatthew G. Knepley 486544a7f3ddSMatthew G. Knepley PetscFunctionBegin; 48663ba16761SJacob Faibussowitsch if (Nf >= NfNew) PetscFunctionReturn(PETSC_SUCCESS); 48679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NfNew, &tmpr)); 486844a7f3ddSMatthew G. Knepley for (f = 0; f < Nf; ++f) tmpr[f] = dm->fields[f]; 48699371c9d4SSatish Balay for (f = Nf; f < NfNew; ++f) { 48709371c9d4SSatish Balay tmpr[f].disc = NULL; 48719371c9d4SSatish Balay tmpr[f].label = NULL; 48729371c9d4SSatish Balay tmpr[f].avoidTensor = PETSC_FALSE; 48739371c9d4SSatish Balay } 48749566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 487544a7f3ddSMatthew G. Knepley dm->Nf = NfNew; 487644a7f3ddSMatthew G. Knepley dm->fields = tmpr; 48773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 487844a7f3ddSMatthew G. Knepley } 487944a7f3ddSMatthew G. Knepley 488044a7f3ddSMatthew G. Knepley /*@ 488120f4b53cSBarry Smith DMClearFields - Remove all fields from the `DM` 488244a7f3ddSMatthew G. Knepley 488320f4b53cSBarry Smith Logically Collective 488444a7f3ddSMatthew G. Knepley 488544a7f3ddSMatthew G. Knepley Input Parameter: 488620f4b53cSBarry Smith . dm - The `DM` 488744a7f3ddSMatthew G. Knepley 488844a7f3ddSMatthew G. Knepley Level: intermediate 488944a7f3ddSMatthew G. Knepley 48901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetNumFields()`, `DMSetField()` 489144a7f3ddSMatthew G. Knepley @*/ 4892d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearFields(DM dm) 4893d71ae5a4SJacob Faibussowitsch { 489444a7f3ddSMatthew G. Knepley PetscInt f; 489544a7f3ddSMatthew G. Knepley 489644a7f3ddSMatthew G. Knepley PetscFunctionBegin; 489744a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 489844a7f3ddSMatthew G. Knepley for (f = 0; f < dm->Nf; ++f) { 48999566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 49009566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 490144a7f3ddSMatthew G. Knepley } 49029566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 490344a7f3ddSMatthew G. Knepley dm->fields = NULL; 490444a7f3ddSMatthew G. Knepley dm->Nf = 0; 49053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 490644a7f3ddSMatthew G. Knepley } 490744a7f3ddSMatthew G. Knepley 4908689b5837SMatthew G. Knepley /*@ 490920f4b53cSBarry Smith DMGetNumFields - Get the number of fields in the `DM` 4910689b5837SMatthew G. Knepley 491120f4b53cSBarry Smith Not Collective 4912689b5837SMatthew G. Knepley 4913689b5837SMatthew G. Knepley Input Parameter: 491420f4b53cSBarry Smith . dm - The `DM` 4915689b5837SMatthew G. Knepley 4916689b5837SMatthew G. Knepley Output Parameter: 491760225df5SJacob Faibussowitsch . numFields - The number of fields 4918689b5837SMatthew G. Knepley 4919689b5837SMatthew G. Knepley Level: intermediate 4920689b5837SMatthew G. Knepley 49211cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNumFields()`, `DMSetField()` 4922689b5837SMatthew G. Knepley @*/ 4923d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumFields(DM dm, PetscInt *numFields) 4924d71ae5a4SJacob Faibussowitsch { 49250f21e855SMatthew G. Knepley PetscFunctionBegin; 49260f21e855SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49274f572ea9SToby Isaac PetscAssertPointer(numFields, 2); 492844a7f3ddSMatthew G. Knepley *numFields = dm->Nf; 49293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4930af122d2aSMatthew G Knepley } 4931af122d2aSMatthew G Knepley 4932689b5837SMatthew G. Knepley /*@ 493320f4b53cSBarry Smith DMSetNumFields - Set the number of fields in the `DM` 4934689b5837SMatthew G. Knepley 493520f4b53cSBarry Smith Logically Collective 4936689b5837SMatthew G. Knepley 4937689b5837SMatthew G. Knepley Input Parameters: 493820f4b53cSBarry Smith + dm - The `DM` 493960225df5SJacob Faibussowitsch - numFields - The number of fields 4940689b5837SMatthew G. Knepley 4941689b5837SMatthew G. Knepley Level: intermediate 4942689b5837SMatthew G. Knepley 49431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetField()` 4944689b5837SMatthew G. Knepley @*/ 4945d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNumFields(DM dm, PetscInt numFields) 4946d71ae5a4SJacob Faibussowitsch { 49470f21e855SMatthew G. Knepley PetscInt Nf, f; 4948af122d2aSMatthew G Knepley 4949af122d2aSMatthew G Knepley PetscFunctionBegin; 4950af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49519566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 49520f21e855SMatthew G. Knepley for (f = Nf; f < numFields; ++f) { 49530f21e855SMatthew G. Knepley PetscContainer obj; 49540f21e855SMatthew G. Knepley 49559566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject)dm), &obj)); 49569566063dSJacob Faibussowitsch PetscCall(DMAddField(dm, NULL, (PetscObject)obj)); 49579566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&obj)); 4958af122d2aSMatthew G Knepley } 49593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4960af122d2aSMatthew G Knepley } 4961af122d2aSMatthew G Knepley 4962c1929be8SMatthew G. Knepley /*@ 4963bb7acecfSBarry Smith DMGetField - Return the `DMLabel` and discretization object for a given `DM` field 4964c1929be8SMatthew G. Knepley 496520f4b53cSBarry Smith Not Collective 4966c1929be8SMatthew G. Knepley 4967c1929be8SMatthew G. Knepley Input Parameters: 4968bb7acecfSBarry Smith + dm - The `DM` 4969c1929be8SMatthew G. Knepley - f - The field number 4970c1929be8SMatthew G. Knepley 497144a7f3ddSMatthew G. Knepley Output Parameters: 497220f4b53cSBarry Smith + label - The label indicating the support of the field, or `NULL` for the entire mesh (pass in `NULL` if not needed) 497320f4b53cSBarry Smith - disc - The discretization object (pass in `NULL` if not needed) 4974c1929be8SMatthew G. Knepley 497544a7f3ddSMatthew G. Knepley Level: intermediate 4976c1929be8SMatthew G. Knepley 49771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()` 4978c1929be8SMatthew G. Knepley @*/ 4979d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetField(DM dm, PetscInt f, DMLabel *label, PetscObject *disc) 4980d71ae5a4SJacob Faibussowitsch { 4981af122d2aSMatthew G Knepley PetscFunctionBegin; 4982af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49834f572ea9SToby Isaac PetscAssertPointer(disc, 4); 49847a8be351SBarry Smith PetscCheck((f >= 0) && (f < dm->Nf), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, dm->Nf); 498544a7f3ddSMatthew G. Knepley if (label) *label = dm->fields[f].label; 4986bb7acecfSBarry Smith if (disc) *disc = dm->fields[f].disc; 49873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4988decb47aaSMatthew G. Knepley } 4989decb47aaSMatthew G. Knepley 4990083401c6SMatthew G. Knepley /* Does not clear the DS */ 4991d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField_Internal(DM dm, PetscInt f, DMLabel label, PetscObject disc) 4992d71ae5a4SJacob Faibussowitsch { 4993083401c6SMatthew G. Knepley PetscFunctionBegin; 49949566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, f + 1)); 49959566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 49969566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 4997083401c6SMatthew G. Knepley dm->fields[f].label = label; 4998bb7acecfSBarry Smith dm->fields[f].disc = disc; 49999566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 5000bb7acecfSBarry Smith PetscCall(PetscObjectReference((PetscObject)disc)); 50013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5002083401c6SMatthew G. Knepley } 5003083401c6SMatthew G. Knepley 500446560f82SMatthew G. Knepley /*@C 5005bb7acecfSBarry Smith DMSetField - Set the discretization object for a given `DM` field. Usually one would call `DMAddField()` which automatically handles 5006bb7acecfSBarry Smith the field numbering. 5007c1929be8SMatthew G. Knepley 500820f4b53cSBarry Smith Logically Collective 5009c1929be8SMatthew G. Knepley 5010c1929be8SMatthew G. Knepley Input Parameters: 5011bb7acecfSBarry Smith + dm - The `DM` 5012c1929be8SMatthew G. Knepley . f - The field number 501320f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh 5014bb7acecfSBarry Smith - disc - The discretization object 5015c1929be8SMatthew G. Knepley 501644a7f3ddSMatthew G. Knepley Level: intermediate 5017c1929be8SMatthew G. Knepley 50181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()` 5019c1929be8SMatthew G. Knepley @*/ 5020d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField(DM dm, PetscInt f, DMLabel label, PetscObject disc) 5021d71ae5a4SJacob Faibussowitsch { 5022decb47aaSMatthew G. Knepley PetscFunctionBegin; 5023decb47aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5024e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 5025bb7acecfSBarry Smith PetscValidHeader(disc, 4); 50267a8be351SBarry Smith PetscCheck(f >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be non-negative", f); 5027bb7acecfSBarry Smith PetscCall(DMSetField_Internal(dm, f, label, disc)); 5028bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, f, disc)); 50299566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 50303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 503144a7f3ddSMatthew G. Knepley } 503244a7f3ddSMatthew G. Knepley 503346560f82SMatthew G. Knepley /*@C 5034bb7acecfSBarry Smith DMAddField - Add a field to a `DM` object. A field is a function space defined by of a set of discretization points (geometric entities) 5035bb7acecfSBarry Smith and a discretization object that defines the function space associated with those points. 503644a7f3ddSMatthew G. Knepley 503720f4b53cSBarry Smith Logically Collective 503844a7f3ddSMatthew G. Knepley 503944a7f3ddSMatthew G. Knepley Input Parameters: 5040bb7acecfSBarry Smith + dm - The `DM` 504120f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh 5042bb7acecfSBarry Smith - disc - The discretization object 504344a7f3ddSMatthew G. Knepley 504444a7f3ddSMatthew G. Knepley Level: intermediate 504544a7f3ddSMatthew G. Knepley 5046bb7acecfSBarry Smith Notes: 5047bb7acecfSBarry Smith The label already exists or will be added to the `DM` with `DMSetLabel()`. 5048bb7acecfSBarry Smith 5049da81f932SPierre Jolivet For example, a piecewise continuous pressure field can be defined by coefficients at the cell centers of a mesh and piecewise constant functions 5050bb7acecfSBarry Smith within each cell. Thus a specific function in the space is defined by the combination of a `Vec` containing the coefficients, a `DM` defining the 5051bb7acecfSBarry Smith geometry entities, a `DMLabel` indicating a subset of those geometric entities, and a discretization object, such as a `PetscFE`. 5052bb7acecfSBarry Smith 50531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLabel()`, `DMSetField()`, `DMGetField()`, `PetscFE` 505444a7f3ddSMatthew G. Knepley @*/ 5055d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddField(DM dm, DMLabel label, PetscObject disc) 5056d71ae5a4SJacob Faibussowitsch { 505744a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf; 505844a7f3ddSMatthew G. Knepley 505944a7f3ddSMatthew G. Knepley PetscFunctionBegin; 506044a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5061064a246eSJacob Faibussowitsch if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 5062bb7acecfSBarry Smith PetscValidHeader(disc, 3); 50639566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, Nf + 1)); 506444a7f3ddSMatthew G. Knepley dm->fields[Nf].label = label; 5065bb7acecfSBarry Smith dm->fields[Nf].disc = disc; 50669566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 5067bb7acecfSBarry Smith PetscCall(PetscObjectReference((PetscObject)disc)); 5068bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, Nf, disc)); 50699566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 50703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5071af122d2aSMatthew G Knepley } 50726636e97aSMatthew G Knepley 5073e5e52638SMatthew G. Knepley /*@ 5074e0b68406SMatthew Knepley DMSetFieldAvoidTensor - Set flag to avoid defining the field on tensor cells 5075e0b68406SMatthew Knepley 507620f4b53cSBarry Smith Logically Collective 5077e0b68406SMatthew Knepley 5078e0b68406SMatthew Knepley Input Parameters: 5079bb7acecfSBarry Smith + dm - The `DM` 5080e0b68406SMatthew Knepley . f - The field index 5081bb7acecfSBarry Smith - avoidTensor - `PETSC_TRUE` to skip defining the field on tensor cells 5082e0b68406SMatthew Knepley 5083e0b68406SMatthew Knepley Level: intermediate 5084e0b68406SMatthew Knepley 50851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()` 5086e0b68406SMatthew Knepley @*/ 5087d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFieldAvoidTensor(DM dm, PetscInt f, PetscBool avoidTensor) 5088d71ae5a4SJacob Faibussowitsch { 5089e0b68406SMatthew Knepley PetscFunctionBegin; 509063a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5091e0b68406SMatthew Knepley dm->fields[f].avoidTensor = avoidTensor; 50923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5093e0b68406SMatthew Knepley } 5094e0b68406SMatthew Knepley 5095e0b68406SMatthew Knepley /*@ 5096e0b68406SMatthew Knepley DMGetFieldAvoidTensor - Get flag to avoid defining the field on tensor cells 5097e0b68406SMatthew Knepley 509820f4b53cSBarry Smith Not Collective 5099e0b68406SMatthew Knepley 5100e0b68406SMatthew Knepley Input Parameters: 5101bb7acecfSBarry Smith + dm - The `DM` 5102e0b68406SMatthew Knepley - f - The field index 5103e0b68406SMatthew Knepley 5104e0b68406SMatthew Knepley Output Parameter: 5105e0b68406SMatthew Knepley . avoidTensor - The flag to avoid defining the field on tensor cells 5106e0b68406SMatthew Knepley 5107e0b68406SMatthew Knepley Level: intermediate 5108e0b68406SMatthew Knepley 510960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`, `DMGetField()`, `DMSetFieldAvoidTensor()` 5110e0b68406SMatthew Knepley @*/ 5111d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFieldAvoidTensor(DM dm, PetscInt f, PetscBool *avoidTensor) 5112d71ae5a4SJacob Faibussowitsch { 5113e0b68406SMatthew Knepley PetscFunctionBegin; 511463a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5115e0b68406SMatthew Knepley *avoidTensor = dm->fields[f].avoidTensor; 51163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5117e0b68406SMatthew Knepley } 5118e0b68406SMatthew Knepley 5119e0b68406SMatthew Knepley /*@ 5120bb7acecfSBarry Smith DMCopyFields - Copy the discretizations for the `DM` into another `DM` 5121e5e52638SMatthew G. Knepley 512220f4b53cSBarry Smith Collective 5123e5e52638SMatthew G. Knepley 5124e5e52638SMatthew G. Knepley Input Parameter: 5125bb7acecfSBarry Smith . dm - The `DM` 5126e5e52638SMatthew G. Knepley 5127e5e52638SMatthew G. Knepley Output Parameter: 5128bb7acecfSBarry Smith . newdm - The `DM` 5129e5e52638SMatthew G. Knepley 5130e5e52638SMatthew G. Knepley Level: advanced 5131e5e52638SMatthew G. Knepley 51321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetField()`, `DMSetField()`, `DMAddField()`, `DMCopyDS()`, `DMGetDS()`, `DMGetCellDS()` 5133e5e52638SMatthew G. Knepley @*/ 5134d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyFields(DM dm, DM newdm) 5135d71ae5a4SJacob Faibussowitsch { 5136e5e52638SMatthew G. Knepley PetscInt Nf, f; 5137e5e52638SMatthew G. Knepley 5138e5e52638SMatthew G. Knepley PetscFunctionBegin; 51393ba16761SJacob Faibussowitsch if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS); 51409566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 51419566063dSJacob Faibussowitsch PetscCall(DMClearFields(newdm)); 5142e5e52638SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5143e5e52638SMatthew G. Knepley DMLabel label; 5144e5e52638SMatthew G. Knepley PetscObject field; 514534aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 5146e5e52638SMatthew G. Knepley 51479566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, &label, &field)); 51489566063dSJacob Faibussowitsch PetscCall(DMSetField(newdm, f, label, field)); 51499566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, f, &useCone, &useClosure)); 51509566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(newdm, f, useCone, useClosure)); 515134aa8a36SMatthew G. Knepley } 51523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 515334aa8a36SMatthew G. Knepley } 515434aa8a36SMatthew G. Knepley 515534aa8a36SMatthew G. Knepley /*@ 515634aa8a36SMatthew G. Knepley DMGetAdjacency - Returns the flags for determining variable influence 515734aa8a36SMatthew G. Knepley 515820f4b53cSBarry Smith Not Collective 515934aa8a36SMatthew G. Knepley 516034aa8a36SMatthew G. Knepley Input Parameters: 516120f4b53cSBarry Smith + dm - The `DM` object 516220f4b53cSBarry Smith - f - The field number, or `PETSC_DEFAULT` for the default adjacency 516334aa8a36SMatthew G. Knepley 5164d8d19677SJose E. Roman Output Parameters: 516534aa8a36SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 516634aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 516734aa8a36SMatthew G. Knepley 516834aa8a36SMatthew G. Knepley Level: developer 516934aa8a36SMatthew G. Knepley 517020f4b53cSBarry Smith Notes: 517120f4b53cSBarry Smith .vb 517220f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 517320f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 517420f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 517520f4b53cSBarry Smith .ve 517620f4b53cSBarry Smith Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 517720f4b53cSBarry Smith 51781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetAdjacency()`, `DMGetField()`, `DMSetField()` 517934aa8a36SMatthew G. Knepley @*/ 5180d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAdjacency(DM dm, PetscInt f, PetscBool *useCone, PetscBool *useClosure) 5181d71ae5a4SJacob Faibussowitsch { 518234aa8a36SMatthew G. Knepley PetscFunctionBegin; 518334aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 51844f572ea9SToby Isaac if (useCone) PetscAssertPointer(useCone, 3); 51854f572ea9SToby Isaac if (useClosure) PetscAssertPointer(useClosure, 4); 518634aa8a36SMatthew G. Knepley if (f < 0) { 518734aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->adjacency[0]; 518834aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->adjacency[1]; 518934aa8a36SMatthew G. Knepley } else { 519034aa8a36SMatthew G. Knepley PetscInt Nf; 519134aa8a36SMatthew G. Knepley 51929566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 51937a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 519434aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->fields[f].adjacency[0]; 519534aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->fields[f].adjacency[1]; 519634aa8a36SMatthew G. Knepley } 51973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 519834aa8a36SMatthew G. Knepley } 519934aa8a36SMatthew G. Knepley 520034aa8a36SMatthew G. Knepley /*@ 520134aa8a36SMatthew G. Knepley DMSetAdjacency - Set the flags for determining variable influence 520234aa8a36SMatthew G. Knepley 520320f4b53cSBarry Smith Not Collective 520434aa8a36SMatthew G. Knepley 520534aa8a36SMatthew G. Knepley Input Parameters: 520620f4b53cSBarry Smith + dm - The `DM` object 520734aa8a36SMatthew G. Knepley . f - The field number 520834aa8a36SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 520934aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 521034aa8a36SMatthew G. Knepley 521134aa8a36SMatthew G. Knepley Level: developer 521234aa8a36SMatthew G. Knepley 521320f4b53cSBarry Smith Notes: 521420f4b53cSBarry Smith .vb 521520f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 521620f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 521720f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 521820f4b53cSBarry Smith .ve 521920f4b53cSBarry Smith Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 522020f4b53cSBarry Smith 52211cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetAdjacency()`, `DMGetField()`, `DMSetField()` 522234aa8a36SMatthew G. Knepley @*/ 5223d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAdjacency(DM dm, PetscInt f, PetscBool useCone, PetscBool useClosure) 5224d71ae5a4SJacob Faibussowitsch { 522534aa8a36SMatthew G. Knepley PetscFunctionBegin; 522634aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 522734aa8a36SMatthew G. Knepley if (f < 0) { 522834aa8a36SMatthew G. Knepley dm->adjacency[0] = useCone; 522934aa8a36SMatthew G. Knepley dm->adjacency[1] = useClosure; 523034aa8a36SMatthew G. Knepley } else { 523134aa8a36SMatthew G. Knepley PetscInt Nf; 523234aa8a36SMatthew G. Knepley 52339566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 52347a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 523534aa8a36SMatthew G. Knepley dm->fields[f].adjacency[0] = useCone; 523634aa8a36SMatthew G. Knepley dm->fields[f].adjacency[1] = useClosure; 5237e5e52638SMatthew G. Knepley } 52383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5239e5e52638SMatthew G. Knepley } 5240e5e52638SMatthew G. Knepley 5241b0441da4SMatthew G. Knepley /*@ 5242b0441da4SMatthew G. Knepley DMGetBasicAdjacency - Returns the flags for determining variable influence, using either the default or field 0 if it is defined 5243b0441da4SMatthew G. Knepley 5244b0441da4SMatthew G. Knepley Not collective 5245b0441da4SMatthew G. Knepley 5246f899ff85SJose E. Roman Input Parameter: 524720f4b53cSBarry Smith . dm - The `DM` object 5248b0441da4SMatthew G. Knepley 5249d8d19677SJose E. Roman Output Parameters: 5250b0441da4SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 5251b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5252b0441da4SMatthew G. Knepley 5253b0441da4SMatthew G. Knepley Level: developer 5254b0441da4SMatthew G. Knepley 525520f4b53cSBarry Smith Notes: 525620f4b53cSBarry Smith .vb 525720f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 525820f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 525920f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 526020f4b53cSBarry Smith .ve 526120f4b53cSBarry Smith 52621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5263b0441da4SMatthew G. Knepley @*/ 5264d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasicAdjacency(DM dm, PetscBool *useCone, PetscBool *useClosure) 5265d71ae5a4SJacob Faibussowitsch { 5266b0441da4SMatthew G. Knepley PetscInt Nf; 5267b0441da4SMatthew G. Knepley 5268b0441da4SMatthew G. Knepley PetscFunctionBegin; 5269b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 52704f572ea9SToby Isaac if (useCone) PetscAssertPointer(useCone, 2); 52714f572ea9SToby Isaac if (useClosure) PetscAssertPointer(useClosure, 3); 52729566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5273b0441da4SMatthew G. Knepley if (!Nf) { 52749566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5275b0441da4SMatthew G. Knepley } else { 52769566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, 0, useCone, useClosure)); 5277b0441da4SMatthew G. Knepley } 52783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5279b0441da4SMatthew G. Knepley } 5280b0441da4SMatthew G. Knepley 5281b0441da4SMatthew G. Knepley /*@ 5282b0441da4SMatthew G. Knepley DMSetBasicAdjacency - Set the flags for determining variable influence, using either the default or field 0 if it is defined 5283b0441da4SMatthew G. Knepley 528420f4b53cSBarry Smith Not Collective 5285b0441da4SMatthew G. Knepley 5286b0441da4SMatthew G. Knepley Input Parameters: 528720f4b53cSBarry Smith + dm - The `DM` object 5288b0441da4SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 5289b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5290b0441da4SMatthew G. Knepley 5291b0441da4SMatthew G. Knepley Level: developer 5292b0441da4SMatthew G. Knepley 529320f4b53cSBarry Smith Notes: 529420f4b53cSBarry Smith .vb 529520f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 529620f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 529720f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 529820f4b53cSBarry Smith .ve 529920f4b53cSBarry Smith 53001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5301b0441da4SMatthew G. Knepley @*/ 5302d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetBasicAdjacency(DM dm, PetscBool useCone, PetscBool useClosure) 5303d71ae5a4SJacob Faibussowitsch { 5304b0441da4SMatthew G. Knepley PetscInt Nf; 5305b0441da4SMatthew G. Knepley 5306b0441da4SMatthew G. Knepley PetscFunctionBegin; 5307b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 53089566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5309b0441da4SMatthew G. Knepley if (!Nf) { 53109566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5311b0441da4SMatthew G. Knepley } else { 53129566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, 0, useCone, useClosure)); 5313e5e52638SMatthew G. Knepley } 53143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5315e5e52638SMatthew G. Knepley } 5316e5e52638SMatthew G. Knepley 5317d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompleteBCLabels_Internal(DM dm) 5318d71ae5a4SJacob Faibussowitsch { 5319799db056SMatthew G. Knepley DM plex; 5320799db056SMatthew G. Knepley DMLabel *labels, *glabels; 5321799db056SMatthew G. Knepley const char **names; 5322799db056SMatthew G. Knepley char *sendNames, *recvNames; 5323799db056SMatthew G. Knepley PetscInt Nds, s, maxLabels = 0, maxLen = 0, gmaxLen, Nl = 0, gNl, l, gl, m; 5324799db056SMatthew G. Knepley size_t len; 5325799db056SMatthew G. Knepley MPI_Comm comm; 5326799db056SMatthew G. Knepley PetscMPIInt rank, size, p, *counts, *displs; 5327783e2ec8SMatthew G. Knepley 5328783e2ec8SMatthew G. Knepley PetscFunctionBegin; 5329799db056SMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 5330799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(comm, &size)); 5331799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5332799db056SMatthew G. Knepley PetscCall(DMGetNumDS(dm, &Nds)); 5333799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5334799db056SMatthew G. Knepley PetscDS dsBC; 5335799db056SMatthew G. Knepley PetscInt numBd; 5336799db056SMatthew G. Knepley 533707218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL)); 5338799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5339799db056SMatthew G. Knepley maxLabels += numBd; 5340799db056SMatthew G. Knepley } 5341799db056SMatthew G. Knepley PetscCall(PetscCalloc1(maxLabels, &labels)); 5342799db056SMatthew G. Knepley /* Get list of labels to be completed */ 5343799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5344799db056SMatthew G. Knepley PetscDS dsBC; 5345799db056SMatthew G. Knepley PetscInt numBd, bd; 5346799db056SMatthew G. Knepley 534707218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL)); 5348799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5349799db056SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 5350799db056SMatthew G. Knepley DMLabel label; 5351799db056SMatthew G. Knepley PetscInt field; 5352799db056SMatthew G. Knepley PetscObject obj; 5353799db056SMatthew G. Knepley PetscClassId id; 5354799db056SMatthew G. Knepley 5355799db056SMatthew G. Knepley PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 53569566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 53579566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 5358799db056SMatthew G. Knepley if (!(id == PETSCFE_CLASSID) || !label) continue; 53599371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 53609371c9d4SSatish Balay if (labels[l] == label) break; 5361799db056SMatthew G. Knepley if (l == Nl) labels[Nl++] = label; 5362783e2ec8SMatthew G. Knepley } 5363799db056SMatthew G. Knepley } 5364799db056SMatthew G. Knepley /* Get label names */ 5365799db056SMatthew G. Knepley PetscCall(PetscMalloc1(Nl, &names)); 5366799db056SMatthew G. Knepley for (l = 0; l < Nl; ++l) PetscCall(PetscObjectGetName((PetscObject)labels[l], &names[l])); 53679371c9d4SSatish Balay for (l = 0; l < Nl; ++l) { 53689371c9d4SSatish Balay PetscCall(PetscStrlen(names[l], &len)); 53699371c9d4SSatish Balay maxLen = PetscMax(maxLen, (PetscInt)len + 2); 53709371c9d4SSatish Balay } 5371799db056SMatthew G. Knepley PetscCall(PetscFree(labels)); 5372712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(&maxLen, &gmaxLen, 1, MPIU_INT, MPI_MAX, comm)); 5373799db056SMatthew G. Knepley PetscCall(PetscCalloc1(Nl * gmaxLen, &sendNames)); 5374c6a7a370SJeremy L Thompson for (l = 0; l < Nl; ++l) PetscCall(PetscStrncpy(&sendNames[gmaxLen * l], names[l], gmaxLen)); 5375799db056SMatthew G. Knepley PetscCall(PetscFree(names)); 5376799db056SMatthew G. Knepley /* Put all names on all processes */ 5377799db056SMatthew G. Knepley PetscCall(PetscCalloc2(size, &counts, size + 1, &displs)); 5378799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgather(&Nl, 1, MPI_INT, counts, 1, MPI_INT, comm)); 5379799db056SMatthew G. Knepley for (p = 0; p < size; ++p) displs[p + 1] = displs[p] + counts[p]; 5380799db056SMatthew G. Knepley gNl = displs[size]; 53819371c9d4SSatish Balay for (p = 0; p < size; ++p) { 53829371c9d4SSatish Balay counts[p] *= gmaxLen; 53839371c9d4SSatish Balay displs[p] *= gmaxLen; 53849371c9d4SSatish Balay } 5385799db056SMatthew G. Knepley PetscCall(PetscCalloc2(gNl * gmaxLen, &recvNames, gNl, &glabels)); 5386799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgatherv(sendNames, counts[rank], MPI_CHAR, recvNames, counts, displs, MPI_CHAR, comm)); 5387799db056SMatthew G. Knepley PetscCall(PetscFree2(counts, displs)); 5388799db056SMatthew G. Knepley PetscCall(PetscFree(sendNames)); 5389799db056SMatthew G. Knepley for (l = 0, gl = 0; l < gNl; ++l) { 5390799db056SMatthew G. Knepley PetscCall(DMGetLabel(dm, &recvNames[l * gmaxLen], &glabels[gl])); 5391799db056SMatthew G. Knepley PetscCheck(glabels[gl], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Label %s missing on rank %d", &recvNames[l * gmaxLen], rank); 53929371c9d4SSatish Balay for (m = 0; m < gl; ++m) 53939371c9d4SSatish Balay if (glabels[m] == glabels[gl]) continue; 53949566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 5395799db056SMatthew G. Knepley PetscCall(DMPlexLabelComplete(plex, glabels[gl])); 53969566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 5397799db056SMatthew G. Knepley ++gl; 5398783e2ec8SMatthew G. Knepley } 5399799db056SMatthew G. Knepley PetscCall(PetscFree2(recvNames, glabels)); 54003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5401783e2ec8SMatthew G. Knepley } 5402783e2ec8SMatthew G. Knepley 5403d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDSEnlarge_Static(DM dm, PetscInt NdsNew) 5404d71ae5a4SJacob Faibussowitsch { 5405e5e52638SMatthew G. Knepley DMSpace *tmpd; 5406e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5407e5e52638SMatthew G. Knepley 5408e5e52638SMatthew G. Knepley PetscFunctionBegin; 54093ba16761SJacob Faibussowitsch if (Nds >= NdsNew) PetscFunctionReturn(PETSC_SUCCESS); 54109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NdsNew, &tmpd)); 5411e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) tmpd[s] = dm->probs[s]; 54129371c9d4SSatish Balay for (s = Nds; s < NdsNew; ++s) { 54139371c9d4SSatish Balay tmpd[s].ds = NULL; 54149371c9d4SSatish Balay tmpd[s].label = NULL; 54159371c9d4SSatish Balay tmpd[s].fields = NULL; 54169371c9d4SSatish Balay } 54179566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5418e5e52638SMatthew G. Knepley dm->Nds = NdsNew; 5419e5e52638SMatthew G. Knepley dm->probs = tmpd; 54203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5421e5e52638SMatthew G. Knepley } 5422e5e52638SMatthew G. Knepley 5423e5e52638SMatthew G. Knepley /*@ 542420f4b53cSBarry Smith DMGetNumDS - Get the number of discrete systems in the `DM` 5425e5e52638SMatthew G. Knepley 542620f4b53cSBarry Smith Not Collective 5427e5e52638SMatthew G. Knepley 5428e5e52638SMatthew G. Knepley Input Parameter: 542920f4b53cSBarry Smith . dm - The `DM` 5430e5e52638SMatthew G. Knepley 5431e5e52638SMatthew G. Knepley Output Parameter: 543220f4b53cSBarry Smith . Nds - The number of `PetscDS` objects 5433e5e52638SMatthew G. Knepley 5434e5e52638SMatthew G. Knepley Level: intermediate 5435e5e52638SMatthew G. Knepley 54361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMGetCellDS()` 5437e5e52638SMatthew G. Knepley @*/ 5438d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumDS(DM dm, PetscInt *Nds) 5439d71ae5a4SJacob Faibussowitsch { 5440e5e52638SMatthew G. Knepley PetscFunctionBegin; 5441e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 54424f572ea9SToby Isaac PetscAssertPointer(Nds, 2); 5443e5e52638SMatthew G. Knepley *Nds = dm->Nds; 54443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5445e5e52638SMatthew G. Knepley } 5446e5e52638SMatthew G. Knepley 5447e5e52638SMatthew G. Knepley /*@ 544820f4b53cSBarry Smith DMClearDS - Remove all discrete systems from the `DM` 5449e5e52638SMatthew G. Knepley 545020f4b53cSBarry Smith Logically Collective 5451e5e52638SMatthew G. Knepley 5452e5e52638SMatthew G. Knepley Input Parameter: 545320f4b53cSBarry Smith . dm - The `DM` 5454e5e52638SMatthew G. Knepley 5455e5e52638SMatthew G. Knepley Level: intermediate 5456e5e52638SMatthew G. Knepley 54571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumDS()`, `DMGetDS()`, `DMSetField()` 5458e5e52638SMatthew G. Knepley @*/ 5459d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearDS(DM dm) 5460d71ae5a4SJacob Faibussowitsch { 5461e5e52638SMatthew G. Knepley PetscInt s; 5462e5e52638SMatthew G. Knepley 5463e5e52638SMatthew G. Knepley PetscFunctionBegin; 5464e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5465e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 54669566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 546707218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[s].dsIn)); 54689566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[s].label)); 54699566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[s].fields)); 5470e5e52638SMatthew G. Knepley } 54719566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5472e5e52638SMatthew G. Knepley dm->probs = NULL; 5473e5e52638SMatthew G. Knepley dm->Nds = 0; 54743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5475e5e52638SMatthew G. Knepley } 5476e5e52638SMatthew G. Knepley 5477e5e52638SMatthew G. Knepley /*@ 547820f4b53cSBarry Smith DMGetDS - Get the default `PetscDS` 5479e5e52638SMatthew G. Knepley 548020f4b53cSBarry Smith Not Collective 5481e5e52638SMatthew G. Knepley 5482e5e52638SMatthew G. Knepley Input Parameter: 548320f4b53cSBarry Smith . dm - The `DM` 5484e5e52638SMatthew G. Knepley 5485e5e52638SMatthew G. Knepley Output Parameter: 548607218a29SMatthew G. Knepley . ds - The default `PetscDS` 5487e5e52638SMatthew G. Knepley 5488e5e52638SMatthew G. Knepley Level: intermediate 5489e5e52638SMatthew G. Knepley 54901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCellDS()`, `DMGetRegionDS()` 5491e5e52638SMatthew G. Knepley @*/ 549207218a29SMatthew G. Knepley PetscErrorCode DMGetDS(DM dm, PetscDS *ds) 5493d71ae5a4SJacob Faibussowitsch { 5494e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5495e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 54964f572ea9SToby Isaac PetscAssertPointer(ds, 2); 549707218a29SMatthew G. Knepley PetscCheck(dm->Nds > 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Need to call DMCreateDS() before calling DMGetDS()"); 549807218a29SMatthew G. Knepley *ds = dm->probs[0].ds; 54993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5500e5e52638SMatthew G. Knepley } 5501e5e52638SMatthew G. Knepley 5502e5e52638SMatthew G. Knepley /*@ 550320f4b53cSBarry Smith DMGetCellDS - Get the `PetscDS` defined on a given cell 5504e5e52638SMatthew G. Knepley 550520f4b53cSBarry Smith Not Collective 5506e5e52638SMatthew G. Knepley 5507e5e52638SMatthew G. Knepley Input Parameters: 550820f4b53cSBarry Smith + dm - The `DM` 550920f4b53cSBarry Smith - point - Cell for the `PetscDS` 5510e5e52638SMatthew G. Knepley 551107218a29SMatthew G. Knepley Output Parameters: 551207218a29SMatthew G. Knepley + ds - The `PetscDS` defined on the given cell 551307218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or NULL if the same ds 5514e5e52638SMatthew G. Knepley 5515e5e52638SMatthew G. Knepley Level: developer 5516e5e52638SMatthew G. Knepley 55171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMSetRegionDS()` 5518e5e52638SMatthew G. Knepley @*/ 551907218a29SMatthew G. Knepley PetscErrorCode DMGetCellDS(DM dm, PetscInt point, PetscDS *ds, PetscDS *dsIn) 5520d71ae5a4SJacob Faibussowitsch { 552107218a29SMatthew G. Knepley PetscDS dsDef = NULL; 5522e5e52638SMatthew G. Knepley PetscInt s; 5523e5e52638SMatthew G. Knepley 5524e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5525e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 55264f572ea9SToby Isaac if (ds) PetscAssertPointer(ds, 3); 55274f572ea9SToby Isaac if (dsIn) PetscAssertPointer(dsIn, 4); 552863a3b9bcSJacob Faibussowitsch PetscCheck(point >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Mesh point cannot be negative: %" PetscInt_FMT, point); 552907218a29SMatthew G. Knepley if (ds) *ds = NULL; 553007218a29SMatthew G. Knepley if (dsIn) *dsIn = NULL; 5531e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 5532e5e52638SMatthew G. Knepley PetscInt val; 5533e5e52638SMatthew G. Knepley 55349371c9d4SSatish Balay if (!dm->probs[s].label) { 553507218a29SMatthew G. Knepley dsDef = dm->probs[s].ds; 55369371c9d4SSatish Balay } else { 55379566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(dm->probs[s].label, point, &val)); 55389371c9d4SSatish Balay if (val >= 0) { 553907218a29SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 554007218a29SMatthew G. Knepley if (dsIn) *dsIn = dm->probs[s].dsIn; 55419371c9d4SSatish Balay break; 55429371c9d4SSatish Balay } 5543e5e52638SMatthew G. Knepley } 5544e5e52638SMatthew G. Knepley } 554507218a29SMatthew G. Knepley if (ds && !*ds) *ds = dsDef; 55463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5547e5e52638SMatthew G. Knepley } 5548e5e52638SMatthew G. Knepley 5549e5e52638SMatthew G. Knepley /*@ 555020f4b53cSBarry Smith DMGetRegionDS - Get the `PetscDS` for a given mesh region, defined by a `DMLabel` 5551e5e52638SMatthew G. Knepley 555220f4b53cSBarry Smith Not Collective 5553e5e52638SMatthew G. Knepley 5554e5e52638SMatthew G. Knepley Input Parameters: 555520f4b53cSBarry Smith + dm - The `DM` 555620f4b53cSBarry Smith - label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh 5557e5e52638SMatthew G. Knepley 5558b3cf3223SMatthew G. Knepley Output Parameters: 555920f4b53cSBarry Smith + fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` 556007218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` 556107218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input in the given region, or `NULL` 5562e5e52638SMatthew G. Knepley 5563e5e52638SMatthew G. Knepley Level: advanced 5564e5e52638SMatthew G. Knepley 556520f4b53cSBarry Smith Note: 556620f4b53cSBarry Smith If a non-`NULL` label is given, but there is no `PetscDS` on that specific label, 556720f4b53cSBarry Smith the `PetscDS` for the full domain (if present) is returned. Returns with 556807218a29SMatthew G. Knepley fields = `NULL` and ds = `NULL` if there is no `PetscDS` for the full domain. 556920f4b53cSBarry Smith 55701cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5571e5e52638SMatthew G. Knepley @*/ 557207218a29SMatthew G. Knepley PetscErrorCode DMGetRegionDS(DM dm, DMLabel label, IS *fields, PetscDS *ds, PetscDS *dsIn) 5573d71ae5a4SJacob Faibussowitsch { 5574e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5575e5e52638SMatthew G. Knepley 5576e5e52638SMatthew G. Knepley PetscFunctionBegin; 5577e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5578e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 55799371c9d4SSatish Balay if (fields) { 55804f572ea9SToby Isaac PetscAssertPointer(fields, 3); 55819371c9d4SSatish Balay *fields = NULL; 55829371c9d4SSatish Balay } 55839371c9d4SSatish Balay if (ds) { 55844f572ea9SToby Isaac PetscAssertPointer(ds, 4); 55859371c9d4SSatish Balay *ds = NULL; 55869371c9d4SSatish Balay } 558707218a29SMatthew G. Knepley if (dsIn) { 55884f572ea9SToby Isaac PetscAssertPointer(dsIn, 5); 558907218a29SMatthew G. Knepley *dsIn = NULL; 559007218a29SMatthew G. Knepley } 5591e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5592154ca461SJed Brown if (dm->probs[s].label == label || !dm->probs[s].label) { 5593b3cf3223SMatthew G. Knepley if (fields) *fields = dm->probs[s].fields; 5594b3cf3223SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 559507218a29SMatthew G. Knepley if (dsIn) *dsIn = dm->probs[s].dsIn; 55963ba16761SJacob Faibussowitsch if (dm->probs[s].label) PetscFunctionReturn(PETSC_SUCCESS); 5597b3cf3223SMatthew G. Knepley } 5598e5e52638SMatthew G. Knepley } 55993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5600e5e52638SMatthew G. Knepley } 5601e5e52638SMatthew G. Knepley 5602e5e52638SMatthew G. Knepley /*@ 5603bb7acecfSBarry Smith DMSetRegionDS - Set the `PetscDS` for a given mesh region, defined by a `DMLabel` 5604083401c6SMatthew G. Knepley 560520f4b53cSBarry Smith Collective 5606083401c6SMatthew G. Knepley 5607083401c6SMatthew G. Knepley Input Parameters: 5608bb7acecfSBarry Smith + dm - The `DM` 560920f4b53cSBarry Smith . label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh 561007218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` for all fields 561107218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region 561207218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS` 5613083401c6SMatthew G. Knepley 561420f4b53cSBarry Smith Level: advanced 561520f4b53cSBarry Smith 5616bb7acecfSBarry Smith Note: 5617bb7acecfSBarry Smith If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`. If the `PetscDS` is replaced, 5618083401c6SMatthew G. Knepley the fields argument is ignored. 5619083401c6SMatthew G. Knepley 56201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionNumDS()`, `DMGetDS()`, `DMGetCellDS()` 5621083401c6SMatthew G. Knepley @*/ 562207218a29SMatthew G. Knepley PetscErrorCode DMSetRegionDS(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 5623d71ae5a4SJacob Faibussowitsch { 5624083401c6SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5625083401c6SMatthew G. Knepley 5626083401c6SMatthew G. Knepley PetscFunctionBegin; 5627083401c6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5628083401c6SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 562907218a29SMatthew G. Knepley if (fields) PetscValidHeaderSpecific(fields, IS_CLASSID, 3); 5630064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 4); 563107218a29SMatthew G. Knepley if (dsIn) PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 5); 5632083401c6SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5633083401c6SMatthew G. Knepley if (dm->probs[s].label == label) { 56349566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 563507218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[s].dsIn)); 5636083401c6SMatthew G. Knepley dm->probs[s].ds = ds; 563707218a29SMatthew G. Knepley dm->probs[s].dsIn = dsIn; 56383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5639083401c6SMatthew G. Knepley } 5640083401c6SMatthew G. Knepley } 56419566063dSJacob Faibussowitsch PetscCall(DMDSEnlarge_Static(dm, Nds + 1)); 56429566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 56439566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 56449566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 564507218a29SMatthew G. Knepley PetscCall(PetscObjectReference((PetscObject)dsIn)); 5646083401c6SMatthew G. Knepley if (!label) { 5647083401c6SMatthew G. Knepley /* Put the NULL label at the front, so it is returned as the default */ 5648083401c6SMatthew G. Knepley for (s = Nds - 1; s >= 0; --s) dm->probs[s + 1] = dm->probs[s]; 5649083401c6SMatthew G. Knepley Nds = 0; 5650083401c6SMatthew G. Knepley } 5651083401c6SMatthew G. Knepley dm->probs[Nds].label = label; 5652083401c6SMatthew G. Knepley dm->probs[Nds].fields = fields; 5653083401c6SMatthew G. Knepley dm->probs[Nds].ds = ds; 565407218a29SMatthew G. Knepley dm->probs[Nds].dsIn = dsIn; 56553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5656083401c6SMatthew G. Knepley } 5657083401c6SMatthew G. Knepley 5658083401c6SMatthew G. Knepley /*@ 565920f4b53cSBarry Smith DMGetRegionNumDS - Get the `PetscDS` for a given mesh region, defined by the region number 5660e5e52638SMatthew G. Knepley 566120f4b53cSBarry Smith Not Collective 5662e5e52638SMatthew G. Knepley 5663e5e52638SMatthew G. Knepley Input Parameters: 566420f4b53cSBarry Smith + dm - The `DM` 5665e5e52638SMatthew G. Knepley - num - The region number, in [0, Nds) 5666e5e52638SMatthew G. Knepley 5667e5e52638SMatthew G. Knepley Output Parameters: 566820f4b53cSBarry Smith + label - The region label, or `NULL` 566920f4b53cSBarry Smith . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` 567007218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` 567107218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input in the given region, or `NULL` 5672e5e52638SMatthew G. Knepley 5673e5e52638SMatthew G. Knepley Level: advanced 5674e5e52638SMatthew G. Knepley 56751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5676e5e52638SMatthew G. Knepley @*/ 567707218a29SMatthew G. Knepley PetscErrorCode DMGetRegionNumDS(DM dm, PetscInt num, DMLabel *label, IS *fields, PetscDS *ds, PetscDS *dsIn) 5678d71ae5a4SJacob Faibussowitsch { 5679e5e52638SMatthew G. Knepley PetscInt Nds; 5680e5e52638SMatthew G. Knepley 5681e5e52638SMatthew G. Knepley PetscFunctionBegin; 5682e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 56839566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 568463a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 5685e5e52638SMatthew G. Knepley if (label) { 56864f572ea9SToby Isaac PetscAssertPointer(label, 3); 5687e5e52638SMatthew G. Knepley *label = dm->probs[num].label; 5688e5e52638SMatthew G. Knepley } 5689b3cf3223SMatthew G. Knepley if (fields) { 56904f572ea9SToby Isaac PetscAssertPointer(fields, 4); 5691b3cf3223SMatthew G. Knepley *fields = dm->probs[num].fields; 5692b3cf3223SMatthew G. Knepley } 5693e5e52638SMatthew G. Knepley if (ds) { 56944f572ea9SToby Isaac PetscAssertPointer(ds, 5); 5695e5e52638SMatthew G. Knepley *ds = dm->probs[num].ds; 5696e5e52638SMatthew G. Knepley } 569707218a29SMatthew G. Knepley if (dsIn) { 56984f572ea9SToby Isaac PetscAssertPointer(dsIn, 6); 569907218a29SMatthew G. Knepley *dsIn = dm->probs[num].dsIn; 570007218a29SMatthew G. Knepley } 57013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5702e5e52638SMatthew G. Knepley } 5703e5e52638SMatthew G. Knepley 5704e5e52638SMatthew G. Knepley /*@ 570520f4b53cSBarry Smith DMSetRegionNumDS - Set the `PetscDS` for a given mesh region, defined by the region number 5706e5e52638SMatthew G. Knepley 570720f4b53cSBarry Smith Not Collective 5708e5e52638SMatthew G. Knepley 5709e5e52638SMatthew G. Knepley Input Parameters: 571020f4b53cSBarry Smith + dm - The `DM` 5711083401c6SMatthew G. Knepley . num - The region number, in [0, Nds) 571220f4b53cSBarry Smith . label - The region label, or `NULL` 571307218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` to prevent setting 571407218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` to prevent setting 571507218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS` 5716e5e52638SMatthew G. Knepley 5717e5e52638SMatthew G. Knepley Level: advanced 5718e5e52638SMatthew G. Knepley 57191cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5720e5e52638SMatthew G. Knepley @*/ 572107218a29SMatthew G. Knepley PetscErrorCode DMSetRegionNumDS(DM dm, PetscInt num, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 5722d71ae5a4SJacob Faibussowitsch { 5723083401c6SMatthew G. Knepley PetscInt Nds; 5724e5e52638SMatthew G. Knepley 5725e5e52638SMatthew G. Knepley PetscFunctionBegin; 5726e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5727ad540459SPierre Jolivet if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 57289566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 572963a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 57309566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 57319566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[num].label)); 5732083401c6SMatthew G. Knepley dm->probs[num].label = label; 5733083401c6SMatthew G. Knepley if (fields) { 5734083401c6SMatthew G. Knepley PetscValidHeaderSpecific(fields, IS_CLASSID, 4); 57359566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 57369566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[num].fields)); 5737083401c6SMatthew G. Knepley dm->probs[num].fields = fields; 5738e5e52638SMatthew G. Knepley } 5739083401c6SMatthew G. Knepley if (ds) { 5740083401c6SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 5); 57419566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 57429566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[num].ds)); 5743083401c6SMatthew G. Knepley dm->probs[num].ds = ds; 5744083401c6SMatthew G. Knepley } 574507218a29SMatthew G. Knepley if (dsIn) { 574607218a29SMatthew G. Knepley PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 6); 574707218a29SMatthew G. Knepley PetscCall(PetscObjectReference((PetscObject)dsIn)); 574807218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[num].dsIn)); 574907218a29SMatthew G. Knepley dm->probs[num].dsIn = dsIn; 575007218a29SMatthew G. Knepley } 57513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5752e5e52638SMatthew G. Knepley } 5753e5e52638SMatthew G. Knepley 5754e5e52638SMatthew G. Knepley /*@ 575520f4b53cSBarry Smith DMFindRegionNum - Find the region number for a given `PetscDS`, or -1 if it is not found. 57561d3af9e0SMatthew G. Knepley 575720f4b53cSBarry Smith Not Collective 57581d3af9e0SMatthew G. Knepley 57591d3af9e0SMatthew G. Knepley Input Parameters: 576020f4b53cSBarry Smith + dm - The `DM` 576120f4b53cSBarry Smith - ds - The `PetscDS` defined on the given region 57621d3af9e0SMatthew G. Knepley 57631d3af9e0SMatthew G. Knepley Output Parameter: 57641d3af9e0SMatthew G. Knepley . num - The region number, in [0, Nds), or -1 if not found 57651d3af9e0SMatthew G. Knepley 57661d3af9e0SMatthew G. Knepley Level: advanced 57671d3af9e0SMatthew G. Knepley 57681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 57691d3af9e0SMatthew G. Knepley @*/ 5770d71ae5a4SJacob Faibussowitsch PetscErrorCode DMFindRegionNum(DM dm, PetscDS ds, PetscInt *num) 5771d71ae5a4SJacob Faibussowitsch { 57721d3af9e0SMatthew G. Knepley PetscInt Nds, n; 57731d3af9e0SMatthew G. Knepley 57741d3af9e0SMatthew G. Knepley PetscFunctionBegin; 57751d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 57761d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 2); 57774f572ea9SToby Isaac PetscAssertPointer(num, 3); 57789566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 57799371c9d4SSatish Balay for (n = 0; n < Nds; ++n) 57809371c9d4SSatish Balay if (ds == dm->probs[n].ds) break; 57811d3af9e0SMatthew G. Knepley if (n >= Nds) *num = -1; 57821d3af9e0SMatthew G. Knepley else *num = n; 57833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57841d3af9e0SMatthew G. Knepley } 57851d3af9e0SMatthew G. Knepley 57862df84da0SMatthew G. Knepley /*@C 5787bb7acecfSBarry Smith DMCreateFEDefault - Create a `PetscFE` based on the celltype for the mesh 57882df84da0SMatthew G. Knepley 578920f4b53cSBarry Smith Not Collective 57902df84da0SMatthew G. Knepley 5791f1a722f8SMatthew G. Knepley Input Parameters: 5792bb7acecfSBarry Smith + dm - The `DM` 57932df84da0SMatthew G. Knepley . Nc - The number of components for the field 579420f4b53cSBarry Smith . prefix - The options prefix for the output `PetscFE`, or `NULL` 5795bb7acecfSBarry Smith - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree 57962df84da0SMatthew G. Knepley 57972df84da0SMatthew G. Knepley Output Parameter: 5798bb7acecfSBarry Smith . fem - The `PetscFE` 57992df84da0SMatthew G. Knepley 580020f4b53cSBarry Smith Level: intermediate 580120f4b53cSBarry Smith 5802bb7acecfSBarry Smith Note: 5803bb7acecfSBarry Smith This is a convenience method that just calls `PetscFECreateByCell()` underneath. 58042df84da0SMatthew G. Knepley 58051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscFECreateByCell()`, `DMAddField()`, `DMCreateDS()`, `DMGetCellDS()`, `DMGetRegionDS()` 58062df84da0SMatthew G. Knepley @*/ 5807d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFEDefault(DM dm, PetscInt Nc, const char prefix[], PetscInt qorder, PetscFE *fem) 5808d71ae5a4SJacob Faibussowitsch { 58092df84da0SMatthew G. Knepley DMPolytopeType ct; 58102df84da0SMatthew G. Knepley PetscInt dim, cStart; 58112df84da0SMatthew G. Knepley 58122df84da0SMatthew G. Knepley PetscFunctionBegin; 58132df84da0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 58142df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 2); 58154f572ea9SToby Isaac if (prefix) PetscAssertPointer(prefix, 3); 58162df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, qorder, 4); 58174f572ea9SToby Isaac PetscAssertPointer(fem, 5); 58189566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 58199566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 58209566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 58219566063dSJacob Faibussowitsch PetscCall(PetscFECreateByCell(PETSC_COMM_SELF, dim, Nc, ct, prefix, qorder, fem)); 58223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58232df84da0SMatthew G. Knepley } 58242df84da0SMatthew G. Knepley 58251d3af9e0SMatthew G. Knepley /*@ 5826bb7acecfSBarry Smith DMCreateDS - Create the discrete systems for the `DM` based upon the fields added to the `DM` 5827e5e52638SMatthew G. Knepley 582820f4b53cSBarry Smith Collective 5829e5e52638SMatthew G. Knepley 5830e5e52638SMatthew G. Knepley Input Parameter: 5831bb7acecfSBarry Smith . dm - The `DM` 5832e5e52638SMatthew G. Knepley 583320f4b53cSBarry Smith Options Database Key: 5834bb7acecfSBarry Smith . -dm_petscds_view - View all the `PetscDS` objects in this `DM` 583545480ffeSMatthew G. Knepley 583620f4b53cSBarry Smith Level: intermediate 583720f4b53cSBarry Smith 58381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetField`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 5839e5e52638SMatthew G. Knepley @*/ 5840d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDS(DM dm) 5841d71ae5a4SJacob Faibussowitsch { 5842e5e52638SMatthew G. Knepley MPI_Comm comm; 5843083401c6SMatthew G. Knepley PetscDS dsDef; 5844083401c6SMatthew G. Knepley DMLabel *labelSet; 5845f9244615SMatthew G. Knepley PetscInt dE, Nf = dm->Nf, f, s, Nl, l, Ndef, k; 5846f9244615SMatthew G. Knepley PetscBool doSetup = PETSC_TRUE, flg; 5847e5e52638SMatthew G. Knepley 5848e5e52638SMatthew G. Knepley PetscFunctionBegin; 5849e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 58503ba16761SJacob Faibussowitsch if (!dm->fields) PetscFunctionReturn(PETSC_SUCCESS); 58519566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 58529566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dE)); 5853083401c6SMatthew G. Knepley /* Determine how many regions we have */ 58549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nf, &labelSet)); 5855083401c6SMatthew G. Knepley Nl = 0; 5856083401c6SMatthew G. Knepley Ndef = 0; 5857083401c6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5858083401c6SMatthew G. Knepley DMLabel label = dm->fields[f].label; 5859083401c6SMatthew G. Knepley PetscInt l; 5860083401c6SMatthew G. Knepley 5861f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 5862f918ec44SMatthew G. Knepley /* Move CEED context to discretizations */ 5863f918ec44SMatthew G. Knepley { 5864f918ec44SMatthew G. Knepley PetscClassId id; 5865f918ec44SMatthew G. Knepley 58669566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(dm->fields[f].disc, &id)); 5867f918ec44SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 5868f918ec44SMatthew G. Knepley Ceed ceed; 5869f918ec44SMatthew G. Knepley 58709566063dSJacob Faibussowitsch PetscCall(DMGetCeed(dm, &ceed)); 58719566063dSJacob Faibussowitsch PetscCall(PetscFESetCeed((PetscFE)dm->fields[f].disc, ceed)); 5872f918ec44SMatthew G. Knepley } 5873f918ec44SMatthew G. Knepley } 5874f918ec44SMatthew G. Knepley #endif 58759371c9d4SSatish Balay if (!label) { 58769371c9d4SSatish Balay ++Ndef; 58779371c9d4SSatish Balay continue; 58789371c9d4SSatish Balay } 58799371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 58809371c9d4SSatish Balay if (label == labelSet[l]) break; 5881083401c6SMatthew G. Knepley if (l < Nl) continue; 5882083401c6SMatthew G. Knepley labelSet[Nl++] = label; 5883083401c6SMatthew G. Knepley } 5884083401c6SMatthew G. Knepley /* Create default DS if there are no labels to intersect with */ 588507218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL)); 5886083401c6SMatthew G. Knepley if (!dsDef && Ndef && !Nl) { 5887b3cf3223SMatthew G. Knepley IS fields; 5888b3cf3223SMatthew G. Knepley PetscInt *fld, nf; 5889b3cf3223SMatthew G. Knepley 58909371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 58919371c9d4SSatish Balay if (!dm->fields[f].label) ++nf; 58927a8be351SBarry Smith PetscCheck(nf, comm, PETSC_ERR_PLIB, "All fields have labels, but we are trying to create a default DS"); 58939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 58949371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 58959371c9d4SSatish Balay if (!dm->fields[f].label) fld[nf++] = f; 58969566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 58979566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 58989566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 58999566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 590088f0c812SMatthew G. Knepley 59019566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 590207218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, NULL, fields, dsDef, NULL)); 59039566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 59049566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fields)); 59052df9ee95SMatthew G. Knepley } 590607218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL)); 59079566063dSJacob Faibussowitsch if (dsDef) PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 5908083401c6SMatthew G. Knepley /* Intersect labels with default fields */ 5909083401c6SMatthew G. Knepley if (Ndef && Nl) { 59100122748bSMatthew G. Knepley DM plex; 5911083401c6SMatthew G. Knepley DMLabel cellLabel; 5912083401c6SMatthew G. Knepley IS fieldIS, allcellIS, defcellIS = NULL; 5913083401c6SMatthew G. Knepley PetscInt *fields; 5914083401c6SMatthew G. Knepley const PetscInt *cells; 5915083401c6SMatthew G. Knepley PetscInt depth, nf = 0, n, c; 59160122748bSMatthew G. Knepley 59179566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 59189566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(plex, &depth)); 59199566063dSJacob Faibussowitsch PetscCall(DMGetStratumIS(plex, "dim", depth, &allcellIS)); 59209566063dSJacob Faibussowitsch if (!allcellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &allcellIS)); 59215fedec97SMatthew G. Knepley /* TODO This looks like it only works for one label */ 5922083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 5923083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 5924083401c6SMatthew G. Knepley IS pointIS; 5925083401c6SMatthew G. Knepley 59269566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 59279566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, 1, &pointIS)); 59289566063dSJacob Faibussowitsch PetscCall(ISDifference(allcellIS, pointIS, &defcellIS)); 59299566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 5930083401c6SMatthew G. Knepley } 59319566063dSJacob Faibussowitsch PetscCall(ISDestroy(&allcellIS)); 5932083401c6SMatthew G. Knepley 59339566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "defaultCells", &cellLabel)); 59349566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(defcellIS, &n)); 59359566063dSJacob Faibussowitsch PetscCall(ISGetIndices(defcellIS, &cells)); 59369566063dSJacob Faibussowitsch for (c = 0; c < n; ++c) PetscCall(DMLabelSetValue(cellLabel, cells[c], 1)); 59379566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(defcellIS, &cells)); 59389566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 59399566063dSJacob Faibussowitsch PetscCall(DMPlexLabelComplete(plex, cellLabel)); 5940083401c6SMatthew G. Knepley 59419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ndef, &fields)); 59429371c9d4SSatish Balay for (f = 0; f < Nf; ++f) 59439371c9d4SSatish Balay if (!dm->fields[f].label) fields[nf++] = f; 59449566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fieldIS)); 59459566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fieldIS, "dm_fields_")); 59469566063dSJacob Faibussowitsch PetscCall(ISSetType(fieldIS, ISGENERAL)); 59479566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fieldIS, nf, fields, PETSC_OWN_POINTER)); 5948083401c6SMatthew G. Knepley 59499566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 595007218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, cellLabel, fieldIS, dsDef, NULL)); 59519566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 59529566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&cellLabel)); 59539566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 59549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fieldIS)); 59559566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 5956083401c6SMatthew G. Knepley } 5957083401c6SMatthew G. Knepley /* Create label DSes 5958083401c6SMatthew G. Knepley - WE ONLY SUPPORT IDENTICAL OR DISJOINT LABELS 5959083401c6SMatthew G. Knepley */ 5960083401c6SMatthew G. Knepley /* TODO Should check that labels are disjoint */ 5961083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 5962083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 596307218a29SMatthew G. Knepley PetscDS ds, dsIn = NULL; 5964083401c6SMatthew G. Knepley IS fields; 5965083401c6SMatthew G. Knepley PetscInt *fld, nf; 5966083401c6SMatthew G. Knepley 59679566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 59689371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59699371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) ++nf; 59709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 59719371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59729371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) fld[nf++] = f; 59739566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 59749566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 59759566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 59769566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 59779566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(ds, dE)); 5978083401c6SMatthew G. Knepley { 5979083401c6SMatthew G. Knepley DMPolytopeType ct; 5980083401c6SMatthew G. Knepley PetscInt lStart, lEnd; 59815fedec97SMatthew G. Knepley PetscBool isCohesiveLocal = PETSC_FALSE, isCohesive; 59820122748bSMatthew G. Knepley 59839566063dSJacob Faibussowitsch PetscCall(DMLabelGetBounds(label, &lStart, &lEnd)); 5984665f567fSMatthew G. Knepley if (lStart >= 0) { 59859566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, lStart, &ct)); 5986412e9a14SMatthew G. Knepley switch (ct) { 5987412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 5988412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 5989412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 5990d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_QUAD_PRISM_TENSOR: 5991d71ae5a4SJacob Faibussowitsch isCohesiveLocal = PETSC_TRUE; 5992d71ae5a4SJacob Faibussowitsch break; 5993d71ae5a4SJacob Faibussowitsch default: 5994d71ae5a4SJacob Faibussowitsch break; 5995412e9a14SMatthew G. Knepley } 5996665f567fSMatthew G. Knepley } 5997712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(&isCohesiveLocal, &isCohesive, 1, MPIU_BOOL, MPI_LOR, comm)); 599807218a29SMatthew G. Knepley if (isCohesive) { 599907218a29SMatthew G. Knepley PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsIn)); 600007218a29SMatthew G. Knepley PetscCall(PetscDSSetCoordinateDimension(dsIn, dE)); 600107218a29SMatthew G. Knepley } 60025fedec97SMatthew G. Knepley for (f = 0, nf = 0; f < Nf; ++f) { 60035fedec97SMatthew G. Knepley if (label == dm->fields[f].label || !dm->fields[f].label) { 60045fedec97SMatthew G. Knepley if (label == dm->fields[f].label) { 60059566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, nf, NULL)); 60069566063dSJacob Faibussowitsch PetscCall(PetscDSSetCohesive(ds, nf, isCohesive)); 600707218a29SMatthew G. Knepley if (dsIn) { 600807218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, nf, NULL)); 600907218a29SMatthew G. Knepley PetscCall(PetscDSSetCohesive(dsIn, nf, isCohesive)); 601007218a29SMatthew G. Knepley } 60115fedec97SMatthew G. Knepley } 60125fedec97SMatthew G. Knepley ++nf; 60135fedec97SMatthew G. Knepley } 60145fedec97SMatthew G. Knepley } 6015e5e52638SMatthew G. Knepley } 601607218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, label, fields, ds, dsIn)); 601707218a29SMatthew G. Knepley PetscCall(ISDestroy(&fields)); 60189566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 601907218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dsIn)); 6020e5e52638SMatthew G. Knepley } 60219566063dSJacob Faibussowitsch PetscCall(PetscFree(labelSet)); 6022e5e52638SMatthew G. Knepley /* Set fields in DSes */ 6023083401c6SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 6024083401c6SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 602507218a29SMatthew G. Knepley PetscDS dsIn = dm->probs[s].dsIn; 6026083401c6SMatthew G. Knepley IS fields = dm->probs[s].fields; 6027083401c6SMatthew G. Knepley const PetscInt *fld; 60285fedec97SMatthew G. Knepley PetscInt nf, dsnf; 60295fedec97SMatthew G. Knepley PetscBool isCohesive; 6030e5e52638SMatthew G. Knepley 60319566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsnf)); 60329566063dSJacob Faibussowitsch PetscCall(PetscDSIsCohesive(ds, &isCohesive)); 60339566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(fields, &nf)); 60349566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fields, &fld)); 6035083401c6SMatthew G. Knepley for (f = 0; f < nf; ++f) { 6036083401c6SMatthew G. Knepley PetscObject disc = dm->fields[fld[f]].disc; 60375fedec97SMatthew G. Knepley PetscBool isCohesiveField; 6038e5e52638SMatthew G. Knepley PetscClassId id; 6039e5e52638SMatthew G. Knepley 60405fedec97SMatthew G. Knepley /* Handle DS with no fields */ 60419566063dSJacob Faibussowitsch if (dsnf) PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField)); 60425fedec97SMatthew G. Knepley /* If this is a cohesive cell, then regular fields need the lower dimensional discretization */ 604307218a29SMatthew G. Knepley if (isCohesive) { 604407218a29SMatthew G. Knepley if (!isCohesiveField) { 604507218a29SMatthew G. Knepley PetscObject bdDisc; 604607218a29SMatthew G. Knepley 604707218a29SMatthew G. Knepley PetscCall(PetscFEGetHeightSubspace((PetscFE)disc, 1, (PetscFE *)&bdDisc)); 604807218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(ds, f, bdDisc)); 604907218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, f, disc)); 605007218a29SMatthew G. Knepley } else { 60519566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, f, disc)); 605207218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, f, disc)); 605307218a29SMatthew G. Knepley } 605407218a29SMatthew G. Knepley } else { 605507218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(ds, f, disc)); 605607218a29SMatthew G. Knepley } 6057083401c6SMatthew G. Knepley /* We allow people to have placeholder fields and construct the Section by hand */ 60589566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 6059e5e52638SMatthew G. Knepley if ((id != PETSCFE_CLASSID) && (id != PETSCFV_CLASSID)) doSetup = PETSC_FALSE; 6060e5e52638SMatthew G. Knepley } 60619566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fields, &fld)); 6062e5e52638SMatthew G. Knepley } 6063f9244615SMatthew G. Knepley /* Allow k-jet tabulation */ 60649566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)dm)->prefix, "-dm_ds_jet_degree", &k, &flg)); 6065f9244615SMatthew G. Knepley if (flg) { 60663b4aee56SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 60673b4aee56SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 606807218a29SMatthew G. Knepley PetscDS dsIn = dm->probs[s].dsIn; 60693b4aee56SMatthew G. Knepley PetscInt Nf, f; 60703b4aee56SMatthew G. Knepley 60719566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 607207218a29SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 607307218a29SMatthew G. Knepley PetscCall(PetscDSSetJetDegree(ds, f, k)); 607407218a29SMatthew G. Knepley if (dsIn) PetscCall(PetscDSSetJetDegree(dsIn, f, k)); 607507218a29SMatthew G. Knepley } 60763b4aee56SMatthew G. Knepley } 6077f9244615SMatthew G. Knepley } 6078e5e52638SMatthew G. Knepley /* Setup DSes */ 6079e5e52638SMatthew G. Knepley if (doSetup) { 608007218a29SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 6081cf1363e4SMatthew G. Knepley if (dm->setfromoptionscalled) { 6082cf1363e4SMatthew G. Knepley PetscCall(PetscDSSetFromOptions(dm->probs[s].ds)); 6083cf1363e4SMatthew G. Knepley if (dm->probs[s].dsIn) PetscCall(PetscDSSetFromOptions(dm->probs[s].dsIn)); 6084cf1363e4SMatthew G. Knepley } 608507218a29SMatthew G. Knepley PetscCall(PetscDSSetUp(dm->probs[s].ds)); 608607218a29SMatthew G. Knepley if (dm->probs[s].dsIn) PetscCall(PetscDSSetUp(dm->probs[s].dsIn)); 608707218a29SMatthew G. Knepley } 6088e5e52638SMatthew G. Knepley } 60893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6090e5e52638SMatthew G. Knepley } 6091e5e52638SMatthew G. Knepley 6092e5e52638SMatthew G. Knepley /*@ 6093d2b2dc1eSMatthew G. Knepley DMUseTensorOrder - Use a tensor product closure ordering for the default section 6094d2b2dc1eSMatthew G. Knepley 6095d2b2dc1eSMatthew G. Knepley Input Parameters: 6096d2b2dc1eSMatthew G. Knepley + dm - The DM 6097d2b2dc1eSMatthew G. Knepley - tensor - Flag for tensor order 6098d2b2dc1eSMatthew G. Knepley 6099d2b2dc1eSMatthew G. Knepley Level: developer 6100d2b2dc1eSMatthew G. Knepley 6101d2b2dc1eSMatthew G. Knepley .seealso: `DMPlexSetClosurePermutationTensor()`, `PetscSectionResetClosurePermutation()` 6102d2b2dc1eSMatthew G. Knepley @*/ 6103d2b2dc1eSMatthew G. Knepley PetscErrorCode DMUseTensorOrder(DM dm, PetscBool tensor) 6104d2b2dc1eSMatthew G. Knepley { 6105d2b2dc1eSMatthew G. Knepley PetscInt Nf; 6106d2b2dc1eSMatthew G. Knepley PetscBool reorder = PETSC_TRUE, isPlex; 6107d2b2dc1eSMatthew G. Knepley 6108d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 6109d2b2dc1eSMatthew G. Knepley PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 6110d2b2dc1eSMatthew G. Knepley PetscCall(DMGetNumFields(dm, &Nf)); 6111d2b2dc1eSMatthew G. Knepley for (PetscInt f = 0; f < Nf; ++f) { 6112d2b2dc1eSMatthew G. Knepley PetscObject obj; 6113d2b2dc1eSMatthew G. Knepley PetscClassId id; 6114d2b2dc1eSMatthew G. Knepley 6115d2b2dc1eSMatthew G. Knepley PetscCall(DMGetField(dm, f, NULL, &obj)); 6116d2b2dc1eSMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 6117d2b2dc1eSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 6118d2b2dc1eSMatthew G. Knepley PetscSpace sp; 6119d2b2dc1eSMatthew G. Knepley PetscBool tensor; 6120d2b2dc1eSMatthew G. Knepley 6121d2b2dc1eSMatthew G. Knepley PetscCall(PetscFEGetBasisSpace((PetscFE)obj, &sp)); 6122d2b2dc1eSMatthew G. Knepley PetscCall(PetscSpacePolynomialGetTensor(sp, &tensor)); 6123d2b2dc1eSMatthew G. Knepley reorder = reorder && tensor ? PETSC_TRUE : PETSC_FALSE; 6124d2b2dc1eSMatthew G. Knepley } else reorder = PETSC_FALSE; 6125d2b2dc1eSMatthew G. Knepley } 6126d2b2dc1eSMatthew G. Knepley if (tensor) { 6127d2b2dc1eSMatthew G. Knepley if (reorder && isPlex) PetscCall(DMPlexSetClosurePermutationTensor(dm, PETSC_DETERMINE, NULL)); 6128d2b2dc1eSMatthew G. Knepley } else { 6129d2b2dc1eSMatthew G. Knepley PetscSection s; 6130d2b2dc1eSMatthew G. Knepley 6131d2b2dc1eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm, &s)); 6132d2b2dc1eSMatthew G. Knepley if (s) PetscCall(PetscSectionResetClosurePermutation(s)); 6133d2b2dc1eSMatthew G. Knepley } 6134d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 6135d2b2dc1eSMatthew G. Knepley } 6136d2b2dc1eSMatthew G. Knepley 6137d2b2dc1eSMatthew G. Knepley /*@ 6138bb7acecfSBarry Smith DMComputeExactSolution - Compute the exact solution for a given `DM`, using the `PetscDS` information. 61397f96f943SMatthew G. Knepley 614020f4b53cSBarry Smith Collective 6141f2cacb80SMatthew G. Knepley 61427f96f943SMatthew G. Knepley Input Parameters: 6143bb7acecfSBarry Smith + dm - The `DM` 61447f96f943SMatthew G. Knepley - time - The time 61457f96f943SMatthew G. Knepley 61467f96f943SMatthew G. Knepley Output Parameters: 614720f4b53cSBarry Smith + u - The vector will be filled with exact solution values, or `NULL` 614820f4b53cSBarry Smith - u_t - The vector will be filled with the time derivative of exact solution values, or `NULL` 614920f4b53cSBarry Smith 615020f4b53cSBarry Smith Level: developer 61517f96f943SMatthew G. Knepley 6152bb7acecfSBarry Smith Note: 6153bb7acecfSBarry Smith The user must call `PetscDSSetExactSolution()` before using this routine 61547f96f943SMatthew G. Knepley 61551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscDSSetExactSolution()` 61567f96f943SMatthew G. Knepley @*/ 6157d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeExactSolution(DM dm, PetscReal time, Vec u, Vec u_t) 6158d71ae5a4SJacob Faibussowitsch { 61597f96f943SMatthew G. Knepley PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 61607f96f943SMatthew G. Knepley void **ectxs; 6161f60fa741SMatthew G. Knepley Vec locu, locu_t; 61627f96f943SMatthew G. Knepley PetscInt Nf, Nds, s; 61637f96f943SMatthew G. Knepley 61647f96f943SMatthew G. Knepley PetscFunctionBegin; 6165f2cacb80SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6166f60fa741SMatthew G. Knepley if (u) { 6167f60fa741SMatthew G. Knepley PetscValidHeaderSpecific(u, VEC_CLASSID, 3); 6168f60fa741SMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &locu)); 6169f60fa741SMatthew G. Knepley PetscCall(VecSet(locu, 0.)); 6170f60fa741SMatthew G. Knepley } 6171f60fa741SMatthew G. Knepley if (u_t) { 6172f60fa741SMatthew G. Knepley PetscValidHeaderSpecific(u_t, VEC_CLASSID, 4); 6173f60fa741SMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &locu_t)); 6174f60fa741SMatthew G. Knepley PetscCall(VecSet(locu_t, 0.)); 6175f60fa741SMatthew G. Knepley } 61769566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 61779566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(Nf, &exacts, Nf, &ectxs)); 61789566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 61797f96f943SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 61807f96f943SMatthew G. Knepley PetscDS ds; 61817f96f943SMatthew G. Knepley DMLabel label; 61827f96f943SMatthew G. Knepley IS fieldIS; 61837f96f943SMatthew G. Knepley const PetscInt *fields, id = 1; 61847f96f943SMatthew G. Knepley PetscInt dsNf, f; 61857f96f943SMatthew G. Knepley 618607218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 61879566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 61889566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fieldIS, &fields)); 61899566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 61909566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6191f2cacb80SMatthew G. Knepley if (u) { 6192f60fa741SMatthew G. Knepley for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolution(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]])); 6193f60fa741SMatthew G. Knepley if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu)); 6194f60fa741SMatthew G. Knepley else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu)); 61957f96f943SMatthew G. Knepley } 6196f2cacb80SMatthew G. Knepley if (u_t) { 61979566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 61989566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6199f60fa741SMatthew G. Knepley for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolutionTimeDerivative(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]])); 6200f60fa741SMatthew G. Knepley if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu_t)); 6201f60fa741SMatthew G. Knepley else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu_t)); 6202f2cacb80SMatthew G. Knepley } 62039566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fieldIS, &fields)); 6204f2cacb80SMatthew G. Knepley } 6205f2cacb80SMatthew G. Knepley if (u) { 62069566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution")); 62079566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u, "exact_")); 6208f2cacb80SMatthew G. Knepley } 6209f2cacb80SMatthew G. Knepley if (u_t) { 62109566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution Time Derivative")); 62119566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u_t, "exact_t_")); 6212f2cacb80SMatthew G. Knepley } 62139566063dSJacob Faibussowitsch PetscCall(PetscFree2(exacts, ectxs)); 6214f60fa741SMatthew G. Knepley if (u) { 6215f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, locu, INSERT_ALL_VALUES, u)); 6216f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, locu, INSERT_ALL_VALUES, u)); 6217f60fa741SMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &locu)); 6218f60fa741SMatthew G. Knepley } 6219f60fa741SMatthew G. Knepley if (u_t) { 6220f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, locu_t, INSERT_ALL_VALUES, u_t)); 6221f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, locu_t, INSERT_ALL_VALUES, u_t)); 6222f60fa741SMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &locu_t)); 6223f60fa741SMatthew G. Knepley } 62243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 62257f96f943SMatthew G. Knepley } 62267f96f943SMatthew G. Knepley 622707218a29SMatthew G. Knepley static PetscErrorCode DMTransferDS_Internal(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 6228d71ae5a4SJacob Faibussowitsch { 622907218a29SMatthew G. Knepley PetscDS dsNew, dsInNew = NULL; 623045480ffeSMatthew G. Knepley 623145480ffeSMatthew G. Knepley PetscFunctionBegin; 62329566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)ds), &dsNew)); 623307218a29SMatthew G. Knepley PetscCall(PetscDSCopy(ds, dm, dsNew)); 623407218a29SMatthew G. Knepley if (dsIn) { 623507218a29SMatthew G. Knepley PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)dsIn), &dsInNew)); 623607218a29SMatthew G. Knepley PetscCall(PetscDSCopy(dsIn, dm, dsInNew)); 623745480ffeSMatthew G. Knepley } 623807218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, label, fields, dsNew, dsInNew)); 62399566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsNew)); 624007218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dsInNew)); 62413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 624245480ffeSMatthew G. Knepley } 624345480ffeSMatthew G. Knepley 62447f96f943SMatthew G. Knepley /*@ 6245bb7acecfSBarry Smith DMCopyDS - Copy the discrete systems for the `DM` into another `DM` 6246e5e52638SMatthew G. Knepley 624720f4b53cSBarry Smith Collective 6248e5e52638SMatthew G. Knepley 6249e5e52638SMatthew G. Knepley Input Parameter: 6250bb7acecfSBarry Smith . dm - The `DM` 6251e5e52638SMatthew G. Knepley 6252e5e52638SMatthew G. Knepley Output Parameter: 6253bb7acecfSBarry Smith . newdm - The `DM` 6254e5e52638SMatthew G. Knepley 6255e5e52638SMatthew G. Knepley Level: advanced 6256e5e52638SMatthew G. Knepley 62571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 6258e5e52638SMatthew G. Knepley @*/ 6259d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDS(DM dm, DM newdm) 6260d71ae5a4SJacob Faibussowitsch { 6261e5e52638SMatthew G. Knepley PetscInt Nds, s; 6262e5e52638SMatthew G. Knepley 6263e5e52638SMatthew G. Knepley PetscFunctionBegin; 62643ba16761SJacob Faibussowitsch if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS); 62659566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 62669566063dSJacob Faibussowitsch PetscCall(DMClearDS(newdm)); 6267e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 6268e5e52638SMatthew G. Knepley DMLabel label; 6269b3cf3223SMatthew G. Knepley IS fields; 627007218a29SMatthew G. Knepley PetscDS ds, dsIn, newds; 6271783e2ec8SMatthew G. Knepley PetscInt Nbd, bd; 6272e5e52638SMatthew G. Knepley 627307218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fields, &ds, &dsIn)); 6274b8025e53SMatthew G. Knepley /* TODO: We need to change all keys from labels in the old DM to labels in the new DM */ 627507218a29SMatthew G. Knepley PetscCall(DMTransferDS_Internal(newdm, label, fields, ds, dsIn)); 6276d5b43468SJose E. Roman /* Complete new labels in the new DS */ 627707218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(newdm, label, NULL, &newds, NULL)); 62789566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(newds, &Nbd)); 6279783e2ec8SMatthew G. Knepley for (bd = 0; bd < Nbd; ++bd) { 6280b8025e53SMatthew G. Knepley PetscWeakForm wf; 628145480ffeSMatthew G. Knepley DMLabel label; 6282783e2ec8SMatthew G. Knepley PetscInt field; 6283783e2ec8SMatthew G. Knepley 62849566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(newds, bd, &wf, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 62859566063dSJacob Faibussowitsch PetscCall(PetscWeakFormReplaceLabel(wf, label)); 6286783e2ec8SMatthew G. Knepley } 6287e5e52638SMatthew G. Knepley } 6288799db056SMatthew G. Knepley PetscCall(DMCompleteBCLabels_Internal(newdm)); 62893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6290e5e52638SMatthew G. Knepley } 6291e5e52638SMatthew G. Knepley 6292e5e52638SMatthew G. Knepley /*@ 6293bb7acecfSBarry Smith DMCopyDisc - Copy the fields and discrete systems for the `DM` into another `DM` 6294e5e52638SMatthew G. Knepley 629520f4b53cSBarry Smith Collective 6296e5e52638SMatthew G. Knepley 6297e5e52638SMatthew G. Knepley Input Parameter: 6298bb7acecfSBarry Smith . dm - The `DM` 6299e5e52638SMatthew G. Knepley 6300e5e52638SMatthew G. Knepley Output Parameter: 6301bb7acecfSBarry Smith . newdm - The `DM` 6302e5e52638SMatthew G. Knepley 6303e5e52638SMatthew G. Knepley Level: advanced 6304e5e52638SMatthew G. Knepley 630560225df5SJacob Faibussowitsch Developer Notes: 6306bb7acecfSBarry Smith Really ugly name, nothing in PETSc is called a `Disc` plus it is an ugly abbreviation 6307bb7acecfSBarry Smith 63081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMCopyDS()` 6309e5e52638SMatthew G. Knepley @*/ 6310d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDisc(DM dm, DM newdm) 6311d71ae5a4SJacob Faibussowitsch { 6312e5e52638SMatthew G. Knepley PetscFunctionBegin; 63139566063dSJacob Faibussowitsch PetscCall(DMCopyFields(dm, newdm)); 63149566063dSJacob Faibussowitsch PetscCall(DMCopyDS(dm, newdm)); 63153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6316e5e52638SMatthew G. Knepley } 6317e5e52638SMatthew G. Knepley 6318c73cfb54SMatthew G. Knepley /*@ 6319bb7acecfSBarry Smith DMGetDimension - Return the topological dimension of the `DM` 6320c73cfb54SMatthew G. Knepley 632120f4b53cSBarry Smith Not Collective 6322c73cfb54SMatthew G. Knepley 6323c73cfb54SMatthew G. Knepley Input Parameter: 6324bb7acecfSBarry Smith . dm - The `DM` 6325c73cfb54SMatthew G. Knepley 6326c73cfb54SMatthew G. Knepley Output Parameter: 6327c73cfb54SMatthew G. Knepley . dim - The topological dimension 6328c73cfb54SMatthew G. Knepley 6329c73cfb54SMatthew G. Knepley Level: beginner 6330c73cfb54SMatthew G. Knepley 63311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDimension()`, `DMCreate()` 6332c73cfb54SMatthew G. Knepley @*/ 6333d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimension(DM dm, PetscInt *dim) 6334d71ae5a4SJacob Faibussowitsch { 6335c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6336c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 63374f572ea9SToby Isaac PetscAssertPointer(dim, 2); 6338c73cfb54SMatthew G. Knepley *dim = dm->dim; 63393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6340c73cfb54SMatthew G. Knepley } 6341c73cfb54SMatthew G. Knepley 6342c73cfb54SMatthew G. Knepley /*@ 6343bb7acecfSBarry Smith DMSetDimension - Set the topological dimension of the `DM` 6344c73cfb54SMatthew G. Knepley 634520f4b53cSBarry Smith Collective 6346c73cfb54SMatthew G. Knepley 6347c73cfb54SMatthew G. Knepley Input Parameters: 6348bb7acecfSBarry Smith + dm - The `DM` 6349c73cfb54SMatthew G. Knepley - dim - The topological dimension 6350c73cfb54SMatthew G. Knepley 6351c73cfb54SMatthew G. Knepley Level: beginner 6352c73cfb54SMatthew G. Knepley 63531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDimension()`, `DMCreate()` 6354c73cfb54SMatthew G. Knepley @*/ 6355d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDimension(DM dm, PetscInt dim) 6356d71ae5a4SJacob Faibussowitsch { 6357e5e52638SMatthew G. Knepley PetscDS ds; 635845480ffeSMatthew G. Knepley PetscInt Nds, n; 6359f17e8794SMatthew G. Knepley 6360c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6361c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6362c73cfb54SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, dim, 2); 6363c73cfb54SMatthew G. Knepley dm->dim = dim; 6364d17bd122SMatthew G. Knepley if (dm->dim >= 0) { 63659566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 636645480ffeSMatthew G. Knepley for (n = 0; n < Nds; ++n) { 636707218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, n, NULL, NULL, &ds, NULL)); 63689566063dSJacob Faibussowitsch if (ds->dimEmbed < 0) PetscCall(PetscDSSetCoordinateDimension(ds, dim)); 636945480ffeSMatthew G. Knepley } 6370d17bd122SMatthew G. Knepley } 63713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6372c73cfb54SMatthew G. Knepley } 6373c73cfb54SMatthew G. Knepley 6374793f3fe5SMatthew G. Knepley /*@ 6375793f3fe5SMatthew G. Knepley DMGetDimPoints - Get the half-open interval for all points of a given dimension 6376793f3fe5SMatthew G. Knepley 637720f4b53cSBarry Smith Collective 6378793f3fe5SMatthew G. Knepley 6379793f3fe5SMatthew G. Knepley Input Parameters: 6380bb7acecfSBarry Smith + dm - the `DM` 6381793f3fe5SMatthew G. Knepley - dim - the dimension 6382793f3fe5SMatthew G. Knepley 6383793f3fe5SMatthew G. Knepley Output Parameters: 6384793f3fe5SMatthew G. Knepley + pStart - The first point of the given dimension 6385aa049354SPatrick Sanan - pEnd - The first point following points of the given dimension 6386793f3fe5SMatthew G. Knepley 638720f4b53cSBarry Smith Level: intermediate 638820f4b53cSBarry Smith 6389793f3fe5SMatthew G. Knepley Note: 6390793f3fe5SMatthew G. Knepley The points are vertices in the Hasse diagram encoding the topology. This is explained in 6391a8d69d7bSBarry Smith https://arxiv.org/abs/0908.4427. If no points exist of this dimension in the storage scheme, 6392793f3fe5SMatthew G. Knepley then the interval is empty. 6393793f3fe5SMatthew G. Knepley 63941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPLEX`, `DMPlexGetDepthStratum()`, `DMPlexGetHeightStratum()` 6395793f3fe5SMatthew G. Knepley @*/ 6396d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimPoints(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd) 6397d71ae5a4SJacob Faibussowitsch { 6398793f3fe5SMatthew G. Knepley PetscInt d; 6399793f3fe5SMatthew G. Knepley 6400793f3fe5SMatthew G. Knepley PetscFunctionBegin; 6401793f3fe5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64029566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &d)); 64037a8be351SBarry Smith PetscCheck((dim >= 0) && (dim <= d), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %" PetscInt_FMT, dim); 6404dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getdimpoints, dim, pStart, pEnd); 64053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6406793f3fe5SMatthew G. Knepley } 6407793f3fe5SMatthew G. Knepley 64086636e97aSMatthew G Knepley /*@ 6409bb7acecfSBarry Smith DMGetOutputDM - Retrieve the `DM` associated with the layout for output 6410f4d763aaSMatthew G. Knepley 641120f4b53cSBarry Smith Collective 64128f700142SStefano Zampini 6413f4d763aaSMatthew G. Knepley Input Parameter: 6414bb7acecfSBarry Smith . dm - The original `DM` 6415f4d763aaSMatthew G. Knepley 6416f4d763aaSMatthew G. Knepley Output Parameter: 6417bb7acecfSBarry Smith . odm - The `DM` which provides the layout for output 6418f4d763aaSMatthew G. Knepley 6419f4d763aaSMatthew G. Knepley Level: intermediate 6420f4d763aaSMatthew G. Knepley 6421bb7acecfSBarry Smith Note: 6422bb7acecfSBarry Smith In some situations the vector obtained with `DMCreateGlobalVector()` excludes points for degrees of freedom that are associated with fixed (Dirichelet) boundary 6423bb7acecfSBarry Smith conditions since the algebraic solver does not solve for those variables. The output `DM` includes these excluded points and its global vector contains the 6424bb7acecfSBarry Smith locations for those dof so that they can be output to a file or other viewer along with the unconstrained dof. 6425bb7acecfSBarry Smith 64261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`, `DMGetGlobalSection()`, `DMCreateGlobalVector()`, `PetscSectionHasConstraints()`, `DMSetGlobalSection()` 6427f4d763aaSMatthew G. Knepley @*/ 6428d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputDM(DM dm, DM *odm) 6429d71ae5a4SJacob Faibussowitsch { 6430c26acbdeSMatthew G. Knepley PetscSection section; 6431eb9d3e4dSMatthew G. Knepley IS perm; 6432eb9d3e4dSMatthew G. Knepley PetscBool hasConstraints, newDM, gnewDM; 643314f150ffSMatthew G. Knepley 643414f150ffSMatthew G. Knepley PetscFunctionBegin; 643514f150ffSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64364f572ea9SToby Isaac PetscAssertPointer(odm, 2); 64379566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 64389566063dSJacob Faibussowitsch PetscCall(PetscSectionHasConstraints(section, &hasConstraints)); 6439eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionGetPermutation(section, &perm)); 6440eb9d3e4dSMatthew G. Knepley newDM = hasConstraints || perm ? PETSC_TRUE : PETSC_FALSE; 6441eb9d3e4dSMatthew G. Knepley PetscCall(MPIU_Allreduce(&newDM, &gnewDM, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm))); 6442eb9d3e4dSMatthew G. Knepley if (!gnewDM) { 6443c26acbdeSMatthew G. Knepley *odm = dm; 64443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6445c26acbdeSMatthew G. Knepley } 644614f150ffSMatthew G. Knepley if (!dm->dmBC) { 6447c26acbdeSMatthew G. Knepley PetscSection newSection, gsection; 644814f150ffSMatthew G. Knepley PetscSF sf; 6449eb9d3e4dSMatthew G. Knepley PetscBool usePerm = dm->ignorePermOutput ? PETSC_FALSE : PETSC_TRUE; 645014f150ffSMatthew G. Knepley 64519566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->dmBC)); 64529566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, dm->dmBC)); 64539566063dSJacob Faibussowitsch PetscCall(PetscSectionClone(section, &newSection)); 64549566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm->dmBC, newSection)); 64559566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newSection)); 64569566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm->dmBC, &sf)); 6457eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionCreateGlobalSection(section, sf, usePerm, PETSC_TRUE, PETSC_FALSE, &gsection)); 64589566063dSJacob Faibussowitsch PetscCall(DMSetGlobalSection(dm->dmBC, gsection)); 64599566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&gsection)); 646014f150ffSMatthew G. Knepley } 646114f150ffSMatthew G. Knepley *odm = dm->dmBC; 64623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 646314f150ffSMatthew G. Knepley } 6464f4d763aaSMatthew G. Knepley 6465f4d763aaSMatthew G. Knepley /*@ 6466cdb7a50dSMatthew G. Knepley DMGetOutputSequenceNumber - Retrieve the sequence number/value for output 6467f4d763aaSMatthew G. Knepley 6468f4d763aaSMatthew G. Knepley Input Parameter: 6469bb7acecfSBarry Smith . dm - The original `DM` 6470f4d763aaSMatthew G. Knepley 6471cdb7a50dSMatthew G. Knepley Output Parameters: 6472cdb7a50dSMatthew G. Knepley + num - The output sequence number 6473cdb7a50dSMatthew G. Knepley - val - The output sequence value 6474f4d763aaSMatthew G. Knepley 6475f4d763aaSMatthew G. Knepley Level: intermediate 6476f4d763aaSMatthew G. Knepley 6477bb7acecfSBarry Smith Note: 6478bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6479bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6480bb7acecfSBarry Smith 648160225df5SJacob Faibussowitsch Developer Notes: 6482bb7acecfSBarry Smith The `DM` serves as a convenient place to store the current iteration value. The iteration is not 6483bb7acecfSBarry Smith not directly related to the `DM`. 6484f4d763aaSMatthew G. Knepley 64851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()` 6486f4d763aaSMatthew G. Knepley @*/ 6487d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputSequenceNumber(DM dm, PetscInt *num, PetscReal *val) 6488d71ae5a4SJacob Faibussowitsch { 6489f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6490f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64919371c9d4SSatish Balay if (num) { 64924f572ea9SToby Isaac PetscAssertPointer(num, 2); 64939371c9d4SSatish Balay *num = dm->outputSequenceNum; 64949371c9d4SSatish Balay } 64959371c9d4SSatish Balay if (val) { 64964f572ea9SToby Isaac PetscAssertPointer(val, 3); 64979371c9d4SSatish Balay *val = dm->outputSequenceVal; 64989371c9d4SSatish Balay } 64993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6500f4d763aaSMatthew G. Knepley } 6501f4d763aaSMatthew G. Knepley 6502f4d763aaSMatthew G. Knepley /*@ 6503cdb7a50dSMatthew G. Knepley DMSetOutputSequenceNumber - Set the sequence number/value for output 6504f4d763aaSMatthew G. Knepley 6505f4d763aaSMatthew G. Knepley Input Parameters: 6506bb7acecfSBarry Smith + dm - The original `DM` 6507cdb7a50dSMatthew G. Knepley . num - The output sequence number 6508cdb7a50dSMatthew G. Knepley - val - The output sequence value 6509f4d763aaSMatthew G. Knepley 6510f4d763aaSMatthew G. Knepley Level: intermediate 6511f4d763aaSMatthew G. Knepley 6512bb7acecfSBarry Smith Note: 6513bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6514bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6515f4d763aaSMatthew G. Knepley 65161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()` 6517f4d763aaSMatthew G. Knepley @*/ 6518d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOutputSequenceNumber(DM dm, PetscInt num, PetscReal val) 6519d71ae5a4SJacob Faibussowitsch { 6520f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6521f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6522f4d763aaSMatthew G. Knepley dm->outputSequenceNum = num; 6523cdb7a50dSMatthew G. Knepley dm->outputSequenceVal = val; 65243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6525cdb7a50dSMatthew G. Knepley } 6526cdb7a50dSMatthew G. Knepley 6527cdb7a50dSMatthew G. Knepley /*@C 6528bb7acecfSBarry Smith DMOutputSequenceLoad - Retrieve the sequence value from a `PetscViewer` 6529cdb7a50dSMatthew G. Knepley 6530cdb7a50dSMatthew G. Knepley Input Parameters: 6531bb7acecfSBarry Smith + dm - The original `DM` 6532a4e35b19SJacob Faibussowitsch . viewer - The viewer to get it from 6533cdb7a50dSMatthew G. Knepley . name - The sequence name 6534cdb7a50dSMatthew G. Knepley - num - The output sequence number 6535cdb7a50dSMatthew G. Knepley 6536cdb7a50dSMatthew G. Knepley Output Parameter: 6537cdb7a50dSMatthew G. Knepley . val - The output sequence value 6538cdb7a50dSMatthew G. Knepley 6539cdb7a50dSMatthew G. Knepley Level: intermediate 6540cdb7a50dSMatthew G. Knepley 6541bb7acecfSBarry Smith Note: 6542bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6543bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6544bb7acecfSBarry Smith 654560225df5SJacob Faibussowitsch Developer Notes: 6546bb7acecfSBarry Smith It is unclear at the user API level why a `DM` is needed as input 6547cdb7a50dSMatthew G. Knepley 65481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()` 6549cdb7a50dSMatthew G. Knepley @*/ 6550d71ae5a4SJacob Faibussowitsch PetscErrorCode DMOutputSequenceLoad(DM dm, PetscViewer viewer, const char *name, PetscInt num, PetscReal *val) 6551d71ae5a4SJacob Faibussowitsch { 6552cdb7a50dSMatthew G. Knepley PetscBool ishdf5; 6553cdb7a50dSMatthew G. Knepley 6554cdb7a50dSMatthew G. Knepley PetscFunctionBegin; 6555cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6556cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 65574f572ea9SToby Isaac PetscAssertPointer(val, 5); 65589566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 6559cdb7a50dSMatthew G. Knepley if (ishdf5) { 6560cdb7a50dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 6561cdb7a50dSMatthew G. Knepley PetscScalar value; 6562cdb7a50dSMatthew G. Knepley 65639566063dSJacob Faibussowitsch PetscCall(DMSequenceLoad_HDF5_Internal(dm, name, num, &value, viewer)); 65644aeb217fSMatthew G. Knepley *val = PetscRealPart(value); 6565cdb7a50dSMatthew G. Knepley #endif 6566cdb7a50dSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()"); 65673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6568f4d763aaSMatthew G. Knepley } 65698e4ac7eaSMatthew G. Knepley 65708e4ac7eaSMatthew G. Knepley /*@ 6571bb7acecfSBarry Smith DMGetUseNatural - Get the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 65728e4ac7eaSMatthew G. Knepley 657320f4b53cSBarry Smith Not Collective 65748e4ac7eaSMatthew G. Knepley 65758e4ac7eaSMatthew G. Knepley Input Parameter: 6576bb7acecfSBarry Smith . dm - The `DM` 65778e4ac7eaSMatthew G. Knepley 65788e4ac7eaSMatthew G. Knepley Output Parameter: 6579bb7acecfSBarry Smith . useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 65808e4ac7eaSMatthew G. Knepley 65818e4ac7eaSMatthew G. Knepley Level: beginner 65828e4ac7eaSMatthew G. Knepley 65831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetUseNatural()`, `DMCreate()` 65848e4ac7eaSMatthew G. Knepley @*/ 6585d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetUseNatural(DM dm, PetscBool *useNatural) 6586d71ae5a4SJacob Faibussowitsch { 65878e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 65888e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 65894f572ea9SToby Isaac PetscAssertPointer(useNatural, 2); 65908e4ac7eaSMatthew G. Knepley *useNatural = dm->useNatural; 65913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 65928e4ac7eaSMatthew G. Knepley } 65938e4ac7eaSMatthew G. Knepley 65948e4ac7eaSMatthew G. Knepley /*@ 6595bb7acecfSBarry Smith DMSetUseNatural - Set the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 65968e4ac7eaSMatthew G. Knepley 659720f4b53cSBarry Smith Collective 65988e4ac7eaSMatthew G. Knepley 65998e4ac7eaSMatthew G. Knepley Input Parameters: 6600bb7acecfSBarry Smith + dm - The `DM` 6601bb7acecfSBarry Smith - useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 66028e4ac7eaSMatthew G. Knepley 6603bb7acecfSBarry Smith Note: 6604bb7acecfSBarry Smith This also causes the map to be build after `DMCreateSubDM()` and `DMCreateSuperDM()` 66055d3b26e6SMatthew G. Knepley 66068e4ac7eaSMatthew G. Knepley Level: beginner 66078e4ac7eaSMatthew G. Knepley 66081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetUseNatural()`, `DMCreate()`, `DMPlexDistribute()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 66098e4ac7eaSMatthew G. Knepley @*/ 6610d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUseNatural(DM dm, PetscBool useNatural) 6611d71ae5a4SJacob Faibussowitsch { 66128e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 66138e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 66148833efb5SBlaise Bourdin PetscValidLogicalCollectiveBool(dm, useNatural, 2); 66158e4ac7eaSMatthew G. Knepley dm->useNatural = useNatural; 66163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 66178e4ac7eaSMatthew G. Knepley } 6618c58f1c22SToby Isaac 6619c58f1c22SToby Isaac /*@C 6620bb7acecfSBarry Smith DMCreateLabel - Create a label of the given name if it does not already exist in the `DM` 6621c58f1c22SToby Isaac 6622c58f1c22SToby Isaac Not Collective 6623c58f1c22SToby Isaac 6624c58f1c22SToby Isaac Input Parameters: 6625bb7acecfSBarry Smith + dm - The `DM` object 6626c58f1c22SToby Isaac - name - The label name 6627c58f1c22SToby Isaac 6628c58f1c22SToby Isaac Level: intermediate 6629c58f1c22SToby Isaac 66301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6631c58f1c22SToby Isaac @*/ 6632d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabel(DM dm, const char name[]) 6633d71ae5a4SJacob Faibussowitsch { 66345d80c0bfSVaclav Hapla PetscBool flg; 66355d80c0bfSVaclav Hapla DMLabel label; 6636c58f1c22SToby Isaac 6637c58f1c22SToby Isaac PetscFunctionBegin; 6638c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 66394f572ea9SToby Isaac PetscAssertPointer(name, 2); 66409566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 6641c58f1c22SToby Isaac if (!flg) { 66429566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 66439566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 66449566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 6645c58f1c22SToby Isaac } 66463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6647c58f1c22SToby Isaac } 6648c58f1c22SToby Isaac 6649c58f1c22SToby Isaac /*@C 6650bb7acecfSBarry Smith DMCreateLabelAtIndex - Create a label of the given name at the given index. If it already exists in the `DM`, move it to this index. 66510fdc7489SMatthew Knepley 66520fdc7489SMatthew Knepley Not Collective 66530fdc7489SMatthew Knepley 66540fdc7489SMatthew Knepley Input Parameters: 6655bb7acecfSBarry Smith + dm - The `DM` object 66560fdc7489SMatthew Knepley . l - The index for the label 66570fdc7489SMatthew Knepley - name - The label name 66580fdc7489SMatthew Knepley 66590fdc7489SMatthew Knepley Level: intermediate 66600fdc7489SMatthew Knepley 66611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateLabel()`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 66620fdc7489SMatthew Knepley @*/ 6663d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabelAtIndex(DM dm, PetscInt l, const char name[]) 6664d71ae5a4SJacob Faibussowitsch { 66650fdc7489SMatthew Knepley DMLabelLink orig, prev = NULL; 66660fdc7489SMatthew Knepley DMLabel label; 66670fdc7489SMatthew Knepley PetscInt Nl, m; 66680fdc7489SMatthew Knepley PetscBool flg, match; 66690fdc7489SMatthew Knepley const char *lname; 66700fdc7489SMatthew Knepley 66710fdc7489SMatthew Knepley PetscFunctionBegin; 66720fdc7489SMatthew Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 66734f572ea9SToby Isaac PetscAssertPointer(name, 3); 66749566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 66750fdc7489SMatthew Knepley if (!flg) { 66769566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 66779566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 66789566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 66790fdc7489SMatthew Knepley } 66809566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 668163a3b9bcSJacob Faibussowitsch PetscCheck(l < Nl, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label index %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", l, Nl); 66820fdc7489SMatthew Knepley for (m = 0, orig = dm->labels; m < Nl; ++m, prev = orig, orig = orig->next) { 66839566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)orig->label, &lname)); 66849566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &match)); 66850fdc7489SMatthew Knepley if (match) break; 66860fdc7489SMatthew Knepley } 66873ba16761SJacob Faibussowitsch if (m == l) PetscFunctionReturn(PETSC_SUCCESS); 66880fdc7489SMatthew Knepley if (!m) dm->labels = orig->next; 66890fdc7489SMatthew Knepley else prev->next = orig->next; 66900fdc7489SMatthew Knepley if (!l) { 66910fdc7489SMatthew Knepley orig->next = dm->labels; 66920fdc7489SMatthew Knepley dm->labels = orig; 66930fdc7489SMatthew Knepley } else { 6694fbccb6d4SPierre Jolivet for (m = 0, prev = dm->labels; m < l - 1; ++m, prev = prev->next); 66950fdc7489SMatthew Knepley orig->next = prev->next; 66960fdc7489SMatthew Knepley prev->next = orig; 66970fdc7489SMatthew Knepley } 66983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 66990fdc7489SMatthew Knepley } 67000fdc7489SMatthew Knepley 67010fdc7489SMatthew Knepley /*@C 6702bb7acecfSBarry Smith DMGetLabelValue - Get the value in a `DMLabel` for the given point, with -1 as the default 6703c58f1c22SToby Isaac 6704c58f1c22SToby Isaac Not Collective 6705c58f1c22SToby Isaac 6706c58f1c22SToby Isaac Input Parameters: 6707bb7acecfSBarry Smith + dm - The `DM` object 6708c58f1c22SToby Isaac . name - The label name 6709c58f1c22SToby Isaac - point - The mesh point 6710c58f1c22SToby Isaac 6711c58f1c22SToby Isaac Output Parameter: 6712c58f1c22SToby Isaac . value - The label value for this point, or -1 if the point is not in the label 6713c58f1c22SToby Isaac 6714c58f1c22SToby Isaac Level: beginner 6715c58f1c22SToby Isaac 67161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6717c58f1c22SToby Isaac @*/ 6718d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelValue(DM dm, const char name[], PetscInt point, PetscInt *value) 6719d71ae5a4SJacob Faibussowitsch { 6720c58f1c22SToby Isaac DMLabel label; 6721c58f1c22SToby Isaac 6722c58f1c22SToby Isaac PetscFunctionBegin; 6723c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67244f572ea9SToby Isaac PetscAssertPointer(name, 2); 67259566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 67267a8be351SBarry Smith PetscCheck(label, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No label named %s was found", name); 67279566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, value)); 67283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6729c58f1c22SToby Isaac } 6730c58f1c22SToby Isaac 6731c58f1c22SToby Isaac /*@C 6732bb7acecfSBarry Smith DMSetLabelValue - Add a point to a `DMLabel` with given value 6733c58f1c22SToby Isaac 6734c58f1c22SToby Isaac Not Collective 6735c58f1c22SToby Isaac 6736c58f1c22SToby Isaac Input Parameters: 6737bb7acecfSBarry Smith + dm - The `DM` object 6738c58f1c22SToby Isaac . name - The label name 6739c58f1c22SToby Isaac . point - The mesh point 6740c58f1c22SToby Isaac - value - The label value for this point 6741c58f1c22SToby Isaac 6742c58f1c22SToby Isaac Output Parameter: 6743c58f1c22SToby Isaac 6744c58f1c22SToby Isaac Level: beginner 6745c58f1c22SToby Isaac 67461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelSetValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 6747c58f1c22SToby Isaac @*/ 6748d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6749d71ae5a4SJacob Faibussowitsch { 6750c58f1c22SToby Isaac DMLabel label; 6751c58f1c22SToby Isaac 6752c58f1c22SToby Isaac PetscFunctionBegin; 6753c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67544f572ea9SToby Isaac PetscAssertPointer(name, 2); 67559566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6756c58f1c22SToby Isaac if (!label) { 67579566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 67589566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6759c58f1c22SToby Isaac } 67609566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, value)); 67613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6762c58f1c22SToby Isaac } 6763c58f1c22SToby Isaac 6764c58f1c22SToby Isaac /*@C 6765bb7acecfSBarry Smith DMClearLabelValue - Remove a point from a `DMLabel` with given value 6766c58f1c22SToby Isaac 6767c58f1c22SToby Isaac Not Collective 6768c58f1c22SToby Isaac 6769c58f1c22SToby Isaac Input Parameters: 6770bb7acecfSBarry Smith + dm - The `DM` object 6771c58f1c22SToby Isaac . name - The label name 6772c58f1c22SToby Isaac . point - The mesh point 6773c58f1c22SToby Isaac - value - The label value for this point 6774c58f1c22SToby Isaac 6775c58f1c22SToby Isaac Level: beginner 6776c58f1c22SToby Isaac 67771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelClearValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6778c58f1c22SToby Isaac @*/ 6779d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6780d71ae5a4SJacob Faibussowitsch { 6781c58f1c22SToby Isaac DMLabel label; 6782c58f1c22SToby Isaac 6783c58f1c22SToby Isaac PetscFunctionBegin; 6784c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67854f572ea9SToby Isaac PetscAssertPointer(name, 2); 67869566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 67873ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 67889566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, value)); 67893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6790c58f1c22SToby Isaac } 6791c58f1c22SToby Isaac 6792c58f1c22SToby Isaac /*@C 6793bb7acecfSBarry Smith DMGetLabelSize - Get the value of `DMLabelGetNumValues()` of a `DMLabel` in the `DM` 6794c58f1c22SToby Isaac 6795c58f1c22SToby Isaac Not Collective 6796c58f1c22SToby Isaac 6797c58f1c22SToby Isaac Input Parameters: 6798bb7acecfSBarry Smith + dm - The `DM` object 6799c58f1c22SToby Isaac - name - The label name 6800c58f1c22SToby Isaac 6801c58f1c22SToby Isaac Output Parameter: 6802c58f1c22SToby Isaac . size - The number of different integer ids, or 0 if the label does not exist 6803c58f1c22SToby Isaac 6804c58f1c22SToby Isaac Level: beginner 6805c58f1c22SToby Isaac 680660225df5SJacob Faibussowitsch Developer Notes: 6807bb7acecfSBarry Smith This should be renamed to something like `DMGetLabelNumValues()` or removed. 6808bb7acecfSBarry Smith 68091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetNumValues()`, `DMSetLabelValue()`, `DMGetLabel()` 6810c58f1c22SToby Isaac @*/ 6811d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelSize(DM dm, const char name[], PetscInt *size) 6812d71ae5a4SJacob Faibussowitsch { 6813c58f1c22SToby Isaac DMLabel label; 6814c58f1c22SToby Isaac 6815c58f1c22SToby Isaac PetscFunctionBegin; 6816c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68174f572ea9SToby Isaac PetscAssertPointer(name, 2); 68184f572ea9SToby Isaac PetscAssertPointer(size, 3); 68199566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6820c58f1c22SToby Isaac *size = 0; 68213ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 68229566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, size)); 68233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6824c58f1c22SToby Isaac } 6825c58f1c22SToby Isaac 6826c58f1c22SToby Isaac /*@C 6827bb7acecfSBarry Smith DMGetLabelIdIS - Get the `DMLabelGetValueIS()` from a `DMLabel` in the `DM` 6828c58f1c22SToby Isaac 6829c58f1c22SToby Isaac Not Collective 6830c58f1c22SToby Isaac 6831c58f1c22SToby Isaac Input Parameters: 683260225df5SJacob Faibussowitsch + dm - The `DM` object 6833c58f1c22SToby Isaac - name - The label name 6834c58f1c22SToby Isaac 6835c58f1c22SToby Isaac Output Parameter: 683620f4b53cSBarry Smith . ids - The integer ids, or `NULL` if the label does not exist 6837c58f1c22SToby Isaac 6838c58f1c22SToby Isaac Level: beginner 6839c58f1c22SToby Isaac 68401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValueIS()`, `DMGetLabelSize()` 6841c58f1c22SToby Isaac @*/ 6842d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelIdIS(DM dm, const char name[], IS *ids) 6843d71ae5a4SJacob Faibussowitsch { 6844c58f1c22SToby Isaac DMLabel label; 6845c58f1c22SToby Isaac 6846c58f1c22SToby Isaac PetscFunctionBegin; 6847c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68484f572ea9SToby Isaac PetscAssertPointer(name, 2); 68494f572ea9SToby Isaac PetscAssertPointer(ids, 3); 68509566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6851c58f1c22SToby Isaac *ids = NULL; 6852dab2e251SBlaise Bourdin if (label) { 68539566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, ids)); 6854dab2e251SBlaise Bourdin } else { 6855dab2e251SBlaise Bourdin /* returning an empty IS */ 68569566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_USE_POINTER, ids)); 6857dab2e251SBlaise Bourdin } 68583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6859c58f1c22SToby Isaac } 6860c58f1c22SToby Isaac 6861c58f1c22SToby Isaac /*@C 6862c58f1c22SToby Isaac DMGetStratumSize - Get the number of points in a label stratum 6863c58f1c22SToby Isaac 6864c58f1c22SToby Isaac Not Collective 6865c58f1c22SToby Isaac 6866c58f1c22SToby Isaac Input Parameters: 6867bb7acecfSBarry Smith + dm - The `DM` object 6868c58f1c22SToby Isaac . name - The label name 6869c58f1c22SToby Isaac - value - The stratum value 6870c58f1c22SToby Isaac 6871c58f1c22SToby Isaac Output Parameter: 6872bb7acecfSBarry Smith . size - The number of points, also called the stratum size 6873c58f1c22SToby Isaac 6874c58f1c22SToby Isaac Level: beginner 6875c58f1c22SToby Isaac 68761cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumSize()`, `DMGetLabelSize()`, `DMGetLabelIds()` 6877c58f1c22SToby Isaac @*/ 6878d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumSize(DM dm, const char name[], PetscInt value, PetscInt *size) 6879d71ae5a4SJacob Faibussowitsch { 6880c58f1c22SToby Isaac DMLabel label; 6881c58f1c22SToby Isaac 6882c58f1c22SToby Isaac PetscFunctionBegin; 6883c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68844f572ea9SToby Isaac PetscAssertPointer(name, 2); 68854f572ea9SToby Isaac PetscAssertPointer(size, 4); 68869566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6887c58f1c22SToby Isaac *size = 0; 68883ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 68899566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, value, size)); 68903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6891c58f1c22SToby Isaac } 6892c58f1c22SToby Isaac 6893c58f1c22SToby Isaac /*@C 6894c58f1c22SToby Isaac DMGetStratumIS - Get the points in a label stratum 6895c58f1c22SToby Isaac 6896c58f1c22SToby Isaac Not Collective 6897c58f1c22SToby Isaac 6898c58f1c22SToby Isaac Input Parameters: 6899bb7acecfSBarry Smith + dm - The `DM` object 6900c58f1c22SToby Isaac . name - The label name 6901c58f1c22SToby Isaac - value - The stratum value 6902c58f1c22SToby Isaac 6903c58f1c22SToby Isaac Output Parameter: 690420f4b53cSBarry Smith . points - The stratum points, or `NULL` if the label does not exist or does not have that value 6905c58f1c22SToby Isaac 6906c58f1c22SToby Isaac Level: beginner 6907c58f1c22SToby Isaac 69081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumIS()`, `DMGetStratumSize()` 6909c58f1c22SToby Isaac @*/ 6910d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumIS(DM dm, const char name[], PetscInt value, IS *points) 6911d71ae5a4SJacob Faibussowitsch { 6912c58f1c22SToby Isaac DMLabel label; 6913c58f1c22SToby Isaac 6914c58f1c22SToby Isaac PetscFunctionBegin; 6915c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69164f572ea9SToby Isaac PetscAssertPointer(name, 2); 69174f572ea9SToby Isaac PetscAssertPointer(points, 4); 69189566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6919c58f1c22SToby Isaac *points = NULL; 69203ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69219566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, value, points)); 69223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6923c58f1c22SToby Isaac } 6924c58f1c22SToby Isaac 69254de306b1SToby Isaac /*@C 69269044fa66SMatthew G. Knepley DMSetStratumIS - Set the points in a label stratum 69274de306b1SToby Isaac 69284de306b1SToby Isaac Not Collective 69294de306b1SToby Isaac 69304de306b1SToby Isaac Input Parameters: 6931bb7acecfSBarry Smith + dm - The `DM` object 69324de306b1SToby Isaac . name - The label name 69334de306b1SToby Isaac . value - The stratum value 69344de306b1SToby Isaac - points - The stratum points 69354de306b1SToby Isaac 69364de306b1SToby Isaac Level: beginner 69374de306b1SToby Isaac 69381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMClearLabelStratum()`, `DMLabelClearStratum()`, `DMLabelSetStratumIS()`, `DMGetStratumSize()` 69394de306b1SToby Isaac @*/ 6940d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetStratumIS(DM dm, const char name[], PetscInt value, IS points) 6941d71ae5a4SJacob Faibussowitsch { 69424de306b1SToby Isaac DMLabel label; 69434de306b1SToby Isaac 69444de306b1SToby Isaac PetscFunctionBegin; 69454de306b1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69464f572ea9SToby Isaac PetscAssertPointer(name, 2); 6947292bffcbSToby Isaac PetscValidHeaderSpecific(points, IS_CLASSID, 4); 69489566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 69493ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69509566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(label, value, points)); 69513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 69524de306b1SToby Isaac } 69534de306b1SToby Isaac 6954c58f1c22SToby Isaac /*@C 6955bb7acecfSBarry Smith DMClearLabelStratum - Remove all points from a stratum from a `DMLabel` 6956c58f1c22SToby Isaac 6957c58f1c22SToby Isaac Not Collective 6958c58f1c22SToby Isaac 6959c58f1c22SToby Isaac Input Parameters: 6960bb7acecfSBarry Smith + dm - The `DM` object 6961c58f1c22SToby Isaac . name - The label name 6962c58f1c22SToby Isaac - value - The label value for this point 6963c58f1c22SToby Isaac 6964c58f1c22SToby Isaac Output Parameter: 6965c58f1c22SToby Isaac 6966c58f1c22SToby Isaac Level: beginner 6967c58f1c22SToby Isaac 69681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMLabelClearStratum()`, `DMSetLabelValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 6969c58f1c22SToby Isaac @*/ 6970d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelStratum(DM dm, const char name[], PetscInt value) 6971d71ae5a4SJacob Faibussowitsch { 6972c58f1c22SToby Isaac DMLabel label; 6973c58f1c22SToby Isaac 6974c58f1c22SToby Isaac PetscFunctionBegin; 6975c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69764f572ea9SToby Isaac PetscAssertPointer(name, 2); 69779566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 69783ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69799566063dSJacob Faibussowitsch PetscCall(DMLabelClearStratum(label, value)); 69803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6981c58f1c22SToby Isaac } 6982c58f1c22SToby Isaac 6983c58f1c22SToby Isaac /*@ 6984bb7acecfSBarry Smith DMGetNumLabels - Return the number of labels defined by on the `DM` 6985c58f1c22SToby Isaac 6986c58f1c22SToby Isaac Not Collective 6987c58f1c22SToby Isaac 6988c58f1c22SToby Isaac Input Parameter: 6989bb7acecfSBarry Smith . dm - The `DM` object 6990c58f1c22SToby Isaac 6991c58f1c22SToby Isaac Output Parameter: 6992c58f1c22SToby Isaac . numLabels - the number of Labels 6993c58f1c22SToby Isaac 6994c58f1c22SToby Isaac Level: intermediate 6995c58f1c22SToby Isaac 69961cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabelName()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6997c58f1c22SToby Isaac @*/ 6998d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumLabels(DM dm, PetscInt *numLabels) 6999d71ae5a4SJacob Faibussowitsch { 70005d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7001c58f1c22SToby Isaac PetscInt n = 0; 7002c58f1c22SToby Isaac 7003c58f1c22SToby Isaac PetscFunctionBegin; 7004c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70054f572ea9SToby Isaac PetscAssertPointer(numLabels, 2); 70069371c9d4SSatish Balay while (next) { 70079371c9d4SSatish Balay ++n; 70089371c9d4SSatish Balay next = next->next; 70099371c9d4SSatish Balay } 7010c58f1c22SToby Isaac *numLabels = n; 70113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7012c58f1c22SToby Isaac } 7013c58f1c22SToby Isaac 7014c58f1c22SToby Isaac /*@C 7015c58f1c22SToby Isaac DMGetLabelName - Return the name of nth label 7016c58f1c22SToby Isaac 7017c58f1c22SToby Isaac Not Collective 7018c58f1c22SToby Isaac 7019c58f1c22SToby Isaac Input Parameters: 7020bb7acecfSBarry Smith + dm - The `DM` object 7021c58f1c22SToby Isaac - n - the label number 7022c58f1c22SToby Isaac 7023c58f1c22SToby Isaac Output Parameter: 7024c58f1c22SToby Isaac . name - the label name 7025c58f1c22SToby Isaac 7026c58f1c22SToby Isaac Level: intermediate 7027c58f1c22SToby Isaac 702860225df5SJacob Faibussowitsch Developer Notes: 7029bb7acecfSBarry Smith Some of the functions that appropriate on labels using their number have the suffix ByNum, others do not. 7030bb7acecfSBarry Smith 70311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7032c58f1c22SToby Isaac @*/ 7033d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelName(DM dm, PetscInt n, const char **name) 7034d71ae5a4SJacob Faibussowitsch { 70355d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7036c58f1c22SToby Isaac PetscInt l = 0; 7037c58f1c22SToby Isaac 7038c58f1c22SToby Isaac PetscFunctionBegin; 7039c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70404f572ea9SToby Isaac PetscAssertPointer(name, 3); 7041c58f1c22SToby Isaac while (next) { 7042c58f1c22SToby Isaac if (l == n) { 70439566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, name)); 70443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7045c58f1c22SToby Isaac } 7046c58f1c22SToby Isaac ++l; 7047c58f1c22SToby Isaac next = next->next; 7048c58f1c22SToby Isaac } 704963a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 7050c58f1c22SToby Isaac } 7051c58f1c22SToby Isaac 7052c58f1c22SToby Isaac /*@C 7053bb7acecfSBarry Smith DMHasLabel - Determine whether the `DM` has a label of a given name 7054c58f1c22SToby Isaac 7055c58f1c22SToby Isaac Not Collective 7056c58f1c22SToby Isaac 7057c58f1c22SToby Isaac Input Parameters: 7058bb7acecfSBarry Smith + dm - The `DM` object 7059c58f1c22SToby Isaac - name - The label name 7060c58f1c22SToby Isaac 7061c58f1c22SToby Isaac Output Parameter: 7062bb7acecfSBarry Smith . hasLabel - `PETSC_TRUE` if the label is present 7063c58f1c22SToby Isaac 7064c58f1c22SToby Isaac Level: intermediate 7065c58f1c22SToby Isaac 70661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabel()`, `DMGetLabelByNum()`, `DMCreateLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7067c58f1c22SToby Isaac @*/ 7068d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasLabel(DM dm, const char name[], PetscBool *hasLabel) 7069d71ae5a4SJacob Faibussowitsch { 70705d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7071d67d17b1SMatthew G. Knepley const char *lname; 7072c58f1c22SToby Isaac 7073c58f1c22SToby Isaac PetscFunctionBegin; 7074c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70754f572ea9SToby Isaac PetscAssertPointer(name, 2); 70764f572ea9SToby Isaac PetscAssertPointer(hasLabel, 3); 7077c58f1c22SToby Isaac *hasLabel = PETSC_FALSE; 7078c58f1c22SToby Isaac while (next) { 70799566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 70809566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, hasLabel)); 7081c58f1c22SToby Isaac if (*hasLabel) break; 7082c58f1c22SToby Isaac next = next->next; 7083c58f1c22SToby Isaac } 70843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7085c58f1c22SToby Isaac } 7086c58f1c22SToby Isaac 7087a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown 7088c58f1c22SToby Isaac /*@C 708920f4b53cSBarry Smith DMGetLabel - Return the label of a given name, or `NULL`, from a `DM` 7090c58f1c22SToby Isaac 7091c58f1c22SToby Isaac Not Collective 7092c58f1c22SToby Isaac 7093c58f1c22SToby Isaac Input Parameters: 7094bb7acecfSBarry Smith + dm - The `DM` object 7095c58f1c22SToby Isaac - name - The label name 7096c58f1c22SToby Isaac 7097c58f1c22SToby Isaac Output Parameter: 709820f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent 7099c58f1c22SToby Isaac 7100bb7acecfSBarry Smith Default labels in a `DMPLEX`: 7101bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 7102bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 7103bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 7104bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 7105bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 7106bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 71076d7c9049SMatthew G. Knepley 7108c58f1c22SToby Isaac Level: intermediate 7109c58f1c22SToby Isaac 711060225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMHasLabel()`, `DMGetLabelByNum()`, `DMAddLabel()`, `DMCreateLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 7111c58f1c22SToby Isaac @*/ 7112d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabel(DM dm, const char name[], DMLabel *label) 7113d71ae5a4SJacob Faibussowitsch { 71145d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7115c58f1c22SToby Isaac PetscBool hasLabel; 7116d67d17b1SMatthew G. Knepley const char *lname; 7117c58f1c22SToby Isaac 7118c58f1c22SToby Isaac PetscFunctionBegin; 7119c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71204f572ea9SToby Isaac PetscAssertPointer(name, 2); 71214f572ea9SToby Isaac PetscAssertPointer(label, 3); 7122c58f1c22SToby Isaac *label = NULL; 7123c58f1c22SToby Isaac while (next) { 71249566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 71259566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 7126c58f1c22SToby Isaac if (hasLabel) { 7127c58f1c22SToby Isaac *label = next->label; 7128c58f1c22SToby Isaac break; 7129c58f1c22SToby Isaac } 7130c58f1c22SToby Isaac next = next->next; 7131c58f1c22SToby Isaac } 71323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7133c58f1c22SToby Isaac } 7134c58f1c22SToby Isaac 7135c58f1c22SToby Isaac /*@C 7136bb7acecfSBarry Smith DMGetLabelByNum - Return the nth label on a `DM` 7137c58f1c22SToby Isaac 7138c58f1c22SToby Isaac Not Collective 7139c58f1c22SToby Isaac 7140c58f1c22SToby Isaac Input Parameters: 7141bb7acecfSBarry Smith + dm - The `DM` object 7142c58f1c22SToby Isaac - n - the label number 7143c58f1c22SToby Isaac 7144c58f1c22SToby Isaac Output Parameter: 7145c58f1c22SToby Isaac . label - the label 7146c58f1c22SToby Isaac 7147c58f1c22SToby Isaac Level: intermediate 7148c58f1c22SToby Isaac 71491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7150c58f1c22SToby Isaac @*/ 7151d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelByNum(DM dm, PetscInt n, DMLabel *label) 7152d71ae5a4SJacob Faibussowitsch { 71535d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7154c58f1c22SToby Isaac PetscInt l = 0; 7155c58f1c22SToby Isaac 7156c58f1c22SToby Isaac PetscFunctionBegin; 7157c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71584f572ea9SToby Isaac PetscAssertPointer(label, 3); 7159c58f1c22SToby Isaac while (next) { 7160c58f1c22SToby Isaac if (l == n) { 7161c58f1c22SToby Isaac *label = next->label; 71623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7163c58f1c22SToby Isaac } 7164c58f1c22SToby Isaac ++l; 7165c58f1c22SToby Isaac next = next->next; 7166c58f1c22SToby Isaac } 716763a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 7168c58f1c22SToby Isaac } 7169c58f1c22SToby Isaac 7170c58f1c22SToby Isaac /*@C 7171bb7acecfSBarry Smith DMAddLabel - Add the label to this `DM` 7172c58f1c22SToby Isaac 7173c58f1c22SToby Isaac Not Collective 7174c58f1c22SToby Isaac 7175c58f1c22SToby Isaac Input Parameters: 7176bb7acecfSBarry Smith + dm - The `DM` object 7177bb7acecfSBarry Smith - label - The `DMLabel` 7178c58f1c22SToby Isaac 7179c58f1c22SToby Isaac Level: developer 7180c58f1c22SToby Isaac 718160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7182c58f1c22SToby Isaac @*/ 7183d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddLabel(DM dm, DMLabel label) 7184d71ae5a4SJacob Faibussowitsch { 71855d80c0bfSVaclav Hapla DMLabelLink l, *p, tmpLabel; 7186c58f1c22SToby Isaac PetscBool hasLabel; 7187d67d17b1SMatthew G. Knepley const char *lname; 71885d80c0bfSVaclav Hapla PetscBool flg; 7189c58f1c22SToby Isaac 7190c58f1c22SToby Isaac PetscFunctionBegin; 7191c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71929566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &lname)); 71939566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, lname, &hasLabel)); 71947a8be351SBarry Smith PetscCheck(!hasLabel, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in this DM", lname); 71959566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(1, &tmpLabel)); 7196c58f1c22SToby Isaac tmpLabel->label = label; 7197c58f1c22SToby Isaac tmpLabel->output = PETSC_TRUE; 71985d80c0bfSVaclav Hapla for (p = &dm->labels; (l = *p); p = &l->next) { } 71995d80c0bfSVaclav Hapla *p = tmpLabel; 72009566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 72019566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 72025d80c0bfSVaclav Hapla if (flg) dm->depthLabel = label; 72039566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 7204ba2698f1SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 72053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7206c58f1c22SToby Isaac } 7207c58f1c22SToby Isaac 7208a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown 7209c58f1c22SToby Isaac /*@C 72104a7ee7d0SMatthew G. Knepley DMSetLabel - Replaces the label of a given name, or ignores it if the name is not present 72114a7ee7d0SMatthew G. Knepley 72124a7ee7d0SMatthew G. Knepley Not Collective 72134a7ee7d0SMatthew G. Knepley 72144a7ee7d0SMatthew G. Knepley Input Parameters: 7215bb7acecfSBarry Smith + dm - The `DM` object 7216bb7acecfSBarry Smith - label - The `DMLabel`, having the same name, to substitute 72174a7ee7d0SMatthew G. Knepley 7218bb7acecfSBarry Smith Default labels in a `DMPLEX`: 7219bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 7220bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 7221bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 7222bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 7223bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 7224bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 72254a7ee7d0SMatthew G. Knepley 72264a7ee7d0SMatthew G. Knepley Level: intermediate 72274a7ee7d0SMatthew G. Knepley 72281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 72294a7ee7d0SMatthew G. Knepley @*/ 7230d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabel(DM dm, DMLabel label) 7231d71ae5a4SJacob Faibussowitsch { 72324a7ee7d0SMatthew G. Knepley DMLabelLink next = dm->labels; 72334a7ee7d0SMatthew G. Knepley PetscBool hasLabel, flg; 72344a7ee7d0SMatthew G. Knepley const char *name, *lname; 72354a7ee7d0SMatthew G. Knepley 72364a7ee7d0SMatthew G. Knepley PetscFunctionBegin; 72374a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72384a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 72399566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 72404a7ee7d0SMatthew G. Knepley while (next) { 72419566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 72429566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 72434a7ee7d0SMatthew G. Knepley if (hasLabel) { 72449566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 72459566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 72464a7ee7d0SMatthew G. Knepley if (flg) dm->depthLabel = label; 72479566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 72484a7ee7d0SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 72499566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 72504a7ee7d0SMatthew G. Knepley next->label = label; 72514a7ee7d0SMatthew G. Knepley break; 72524a7ee7d0SMatthew G. Knepley } 72534a7ee7d0SMatthew G. Knepley next = next->next; 72544a7ee7d0SMatthew G. Knepley } 72553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 72564a7ee7d0SMatthew G. Knepley } 72574a7ee7d0SMatthew G. Knepley 72584a7ee7d0SMatthew G. Knepley /*@C 7259bb7acecfSBarry Smith DMRemoveLabel - Remove the label given by name from this `DM` 7260c58f1c22SToby Isaac 7261c58f1c22SToby Isaac Not Collective 7262c58f1c22SToby Isaac 7263c58f1c22SToby Isaac Input Parameters: 7264bb7acecfSBarry Smith + dm - The `DM` object 7265c58f1c22SToby Isaac - name - The label name 7266c58f1c22SToby Isaac 7267c58f1c22SToby Isaac Output Parameter: 726820f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent. Pass in `NULL` to call `DMLabelDestroy()` on the label, otherwise the 7269bb7acecfSBarry Smith caller is responsible for calling `DMLabelDestroy()`. 7270c58f1c22SToby Isaac 7271c58f1c22SToby Isaac Level: developer 7272c58f1c22SToby Isaac 72731cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabelBySelf()` 7274c58f1c22SToby Isaac @*/ 7275d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabel(DM dm, const char name[], DMLabel *label) 7276d71ae5a4SJacob Faibussowitsch { 727795d578d6SVaclav Hapla DMLabelLink link, *pnext; 7278c58f1c22SToby Isaac PetscBool hasLabel; 7279d67d17b1SMatthew G. Knepley const char *lname; 7280c58f1c22SToby Isaac 7281c58f1c22SToby Isaac PetscFunctionBegin; 7282c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72834f572ea9SToby Isaac PetscAssertPointer(name, 2); 7284e5472504SVaclav Hapla if (label) { 72854f572ea9SToby Isaac PetscAssertPointer(label, 3); 7286c58f1c22SToby Isaac *label = NULL; 7287e5472504SVaclav Hapla } 72885d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 72899566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)link->label, &lname)); 72909566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 7291c58f1c22SToby Isaac if (hasLabel) { 729295d578d6SVaclav Hapla *pnext = link->next; /* Remove from list */ 72939566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &hasLabel)); 729495d578d6SVaclav Hapla if (hasLabel) dm->depthLabel = NULL; 72959566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &hasLabel)); 7296ba2698f1SMatthew G. Knepley if (hasLabel) dm->celltypeLabel = NULL; 729795d578d6SVaclav Hapla if (label) *label = link->label; 72989566063dSJacob Faibussowitsch else PetscCall(DMLabelDestroy(&link->label)); 72999566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7300c58f1c22SToby Isaac break; 7301c58f1c22SToby Isaac } 7302c58f1c22SToby Isaac } 73033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7304c58f1c22SToby Isaac } 7305c58f1c22SToby Isaac 7306306894acSVaclav Hapla /*@ 7307bb7acecfSBarry Smith DMRemoveLabelBySelf - Remove the label from this `DM` 7308306894acSVaclav Hapla 7309306894acSVaclav Hapla Not Collective 7310306894acSVaclav Hapla 7311306894acSVaclav Hapla Input Parameters: 7312bb7acecfSBarry Smith + dm - The `DM` object 7313bb7acecfSBarry Smith . label - The `DMLabel` to be removed from the `DM` 731420f4b53cSBarry Smith - failNotFound - Should it fail if the label is not found in the `DM`? 7315306894acSVaclav Hapla 7316306894acSVaclav Hapla Level: developer 7317306894acSVaclav Hapla 7318bb7acecfSBarry Smith Note: 7319306894acSVaclav Hapla Only exactly the same instance is removed if found, name match is ignored. 7320bb7acecfSBarry Smith If the `DM` has an exclusive reference to the label, the label gets destroyed and 7321306894acSVaclav Hapla *label nullified. 7322306894acSVaclav Hapla 73231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()` `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabel()` 7324306894acSVaclav Hapla @*/ 7325d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabelBySelf(DM dm, DMLabel *label, PetscBool failNotFound) 7326d71ae5a4SJacob Faibussowitsch { 732743e45a93SVaclav Hapla DMLabelLink link, *pnext; 7328306894acSVaclav Hapla PetscBool hasLabel = PETSC_FALSE; 7329306894acSVaclav Hapla 7330306894acSVaclav Hapla PetscFunctionBegin; 7331306894acSVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73324f572ea9SToby Isaac PetscAssertPointer(label, 2); 73333ba16761SJacob Faibussowitsch if (!*label && !failNotFound) PetscFunctionReturn(PETSC_SUCCESS); 7334306894acSVaclav Hapla PetscValidHeaderSpecific(*label, DMLABEL_CLASSID, 2); 7335306894acSVaclav Hapla PetscValidLogicalCollectiveBool(dm, failNotFound, 3); 73365d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 733743e45a93SVaclav Hapla if (*label == link->label) { 7338306894acSVaclav Hapla hasLabel = PETSC_TRUE; 733943e45a93SVaclav Hapla *pnext = link->next; /* Remove from list */ 7340306894acSVaclav Hapla if (*label == dm->depthLabel) dm->depthLabel = NULL; 7341ba2698f1SMatthew G. Knepley if (*label == dm->celltypeLabel) dm->celltypeLabel = NULL; 734243e45a93SVaclav Hapla if (((PetscObject)link->label)->refct < 2) *label = NULL; /* nullify if exclusive reference */ 73439566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&link->label)); 73449566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7345306894acSVaclav Hapla break; 7346306894acSVaclav Hapla } 7347306894acSVaclav Hapla } 73487a8be351SBarry Smith PetscCheck(hasLabel || !failNotFound, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Given label not found in DM"); 73493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7350306894acSVaclav Hapla } 7351306894acSVaclav Hapla 7352c58f1c22SToby Isaac /*@C 7353c58f1c22SToby Isaac DMGetLabelOutput - Get the output flag for a given label 7354c58f1c22SToby Isaac 7355c58f1c22SToby Isaac Not Collective 7356c58f1c22SToby Isaac 7357c58f1c22SToby Isaac Input Parameters: 7358bb7acecfSBarry Smith + dm - The `DM` object 7359c58f1c22SToby Isaac - name - The label name 7360c58f1c22SToby Isaac 7361c58f1c22SToby Isaac Output Parameter: 7362c58f1c22SToby Isaac . output - The flag for output 7363c58f1c22SToby Isaac 7364c58f1c22SToby Isaac Level: developer 7365c58f1c22SToby Isaac 73661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMSetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7367c58f1c22SToby Isaac @*/ 7368d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelOutput(DM dm, const char name[], PetscBool *output) 7369d71ae5a4SJacob Faibussowitsch { 73705d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7371d67d17b1SMatthew G. Knepley const char *lname; 7372c58f1c22SToby Isaac 7373c58f1c22SToby Isaac PetscFunctionBegin; 7374c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73754f572ea9SToby Isaac PetscAssertPointer(name, 2); 73764f572ea9SToby Isaac PetscAssertPointer(output, 3); 7377c58f1c22SToby Isaac while (next) { 7378c58f1c22SToby Isaac PetscBool flg; 7379c58f1c22SToby Isaac 73809566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 73819566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 73829371c9d4SSatish Balay if (flg) { 73839371c9d4SSatish Balay *output = next->output; 73843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 73859371c9d4SSatish Balay } 7386c58f1c22SToby Isaac next = next->next; 7387c58f1c22SToby Isaac } 738898921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7389c58f1c22SToby Isaac } 7390c58f1c22SToby Isaac 7391c58f1c22SToby Isaac /*@C 7392bb7acecfSBarry Smith DMSetLabelOutput - Set if a given label should be saved to a `PetscViewer` in calls to `DMView()` 7393c58f1c22SToby Isaac 7394c58f1c22SToby Isaac Not Collective 7395c58f1c22SToby Isaac 7396c58f1c22SToby Isaac Input Parameters: 7397bb7acecfSBarry Smith + dm - The `DM` object 7398c58f1c22SToby Isaac . name - The label name 7399bb7acecfSBarry Smith - output - `PETSC_TRUE` to save the label to the viewer 7400c58f1c22SToby Isaac 7401c58f1c22SToby Isaac Level: developer 7402c58f1c22SToby Isaac 74031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetOutputFlag()`, `DMGetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7404c58f1c22SToby Isaac @*/ 7405d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelOutput(DM dm, const char name[], PetscBool output) 7406d71ae5a4SJacob Faibussowitsch { 74075d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7408d67d17b1SMatthew G. Knepley const char *lname; 7409c58f1c22SToby Isaac 7410c58f1c22SToby Isaac PetscFunctionBegin; 7411c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 74124f572ea9SToby Isaac PetscAssertPointer(name, 2); 7413c58f1c22SToby Isaac while (next) { 7414c58f1c22SToby Isaac PetscBool flg; 7415c58f1c22SToby Isaac 74169566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 74179566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 74189371c9d4SSatish Balay if (flg) { 74199371c9d4SSatish Balay next->output = output; 74203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 74219371c9d4SSatish Balay } 7422c58f1c22SToby Isaac next = next->next; 7423c58f1c22SToby Isaac } 742498921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7425c58f1c22SToby Isaac } 7426c58f1c22SToby Isaac 7427c58f1c22SToby Isaac /*@ 7428bb7acecfSBarry Smith DMCopyLabels - Copy labels from one `DM` mesh to another `DM` with a superset of the points 7429c58f1c22SToby Isaac 743020f4b53cSBarry Smith Collective 7431c58f1c22SToby Isaac 7432d8d19677SJose E. Roman Input Parameters: 7433bb7acecfSBarry Smith + dmA - The `DM` object with initial labels 7434bb7acecfSBarry Smith . dmB - The `DM` object to which labels are copied 7435bb7acecfSBarry Smith . mode - Copy labels by pointers (`PETSC_OWN_POINTER`) or duplicate them (`PETSC_COPY_VALUES`) 7436bb7acecfSBarry Smith . all - Copy all labels including "depth", "dim", and "celltype" (`PETSC_TRUE`) which are otherwise ignored (`PETSC_FALSE`) 7437bb7acecfSBarry Smith - emode - How to behave when a `DMLabel` in the source and destination `DM`s with the same name is encountered (see `DMCopyLabelsMode`) 7438c58f1c22SToby Isaac 7439c58f1c22SToby Isaac Level: intermediate 7440c58f1c22SToby Isaac 7441bb7acecfSBarry Smith Note: 74422cbb9b06SVaclav Hapla This is typically used when interpolating or otherwise adding to a mesh, or testing. 7443c58f1c22SToby Isaac 74441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode` 7445c58f1c22SToby Isaac @*/ 7446d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyLabels(DM dmA, DM dmB, PetscCopyMode mode, PetscBool all, DMCopyLabelsMode emode) 7447d71ae5a4SJacob Faibussowitsch { 74482cbb9b06SVaclav Hapla DMLabel label, labelNew, labelOld; 7449c58f1c22SToby Isaac const char *name; 7450c58f1c22SToby Isaac PetscBool flg; 74515d80c0bfSVaclav Hapla DMLabelLink link; 7452c58f1c22SToby Isaac 74535d80c0bfSVaclav Hapla PetscFunctionBegin; 74545d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 74555d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 74565d80c0bfSVaclav Hapla PetscValidLogicalCollectiveEnum(dmA, mode, 3); 74575d80c0bfSVaclav Hapla PetscValidLogicalCollectiveBool(dmA, all, 4); 74587a8be351SBarry Smith PetscCheck(mode != PETSC_USE_POINTER, PetscObjectComm((PetscObject)dmA), PETSC_ERR_SUP, "PETSC_USE_POINTER not supported for objects"); 74593ba16761SJacob Faibussowitsch if (dmA == dmB) PetscFunctionReturn(PETSC_SUCCESS); 74605d80c0bfSVaclav Hapla for (link = dmA->labels; link; link = link->next) { 74615d80c0bfSVaclav Hapla label = link->label; 74629566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 74635d80c0bfSVaclav Hapla if (!all) { 74649566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &flg)); 7465c58f1c22SToby Isaac if (flg) continue; 74669566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "dim", &flg)); 74677d5acc75SStefano Zampini if (flg) continue; 74689566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &flg)); 7469ba2698f1SMatthew G. Knepley if (flg) continue; 74705d80c0bfSVaclav Hapla } 74719566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmB, name, &labelOld)); 74722cbb9b06SVaclav Hapla if (labelOld) { 74732cbb9b06SVaclav Hapla switch (emode) { 7474d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_KEEP: 7475d71ae5a4SJacob Faibussowitsch continue; 7476d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_REPLACE: 7477d71ae5a4SJacob Faibussowitsch PetscCall(DMRemoveLabelBySelf(dmB, &labelOld, PETSC_TRUE)); 7478d71ae5a4SJacob Faibussowitsch break; 7479d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_FAIL: 7480d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in destination DM", name); 7481d71ae5a4SJacob Faibussowitsch default: 7482d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Unhandled DMCopyLabelsMode %d", (int)emode); 74832cbb9b06SVaclav Hapla } 74842cbb9b06SVaclav Hapla } 74855d80c0bfSVaclav Hapla if (mode == PETSC_COPY_VALUES) { 74869566063dSJacob Faibussowitsch PetscCall(DMLabelDuplicate(label, &labelNew)); 74875d80c0bfSVaclav Hapla } else { 74885d80c0bfSVaclav Hapla labelNew = label; 74895d80c0bfSVaclav Hapla } 74909566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dmB, labelNew)); 74919566063dSJacob Faibussowitsch if (mode == PETSC_COPY_VALUES) PetscCall(DMLabelDestroy(&labelNew)); 7492c58f1c22SToby Isaac } 74933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7494c58f1c22SToby Isaac } 7495461a15a0SLisandro Dalcin 7496609dae6eSVaclav Hapla /*@C 7497b4028c23SStefano Zampini DMCompareLabels - Compare labels between two `DM` objects 7498609dae6eSVaclav Hapla 749920f4b53cSBarry Smith Collective; No Fortran Support 7500609dae6eSVaclav Hapla 7501609dae6eSVaclav Hapla Input Parameters: 7502bb7acecfSBarry Smith + dm0 - First `DM` object 7503bb7acecfSBarry Smith - dm1 - Second `DM` object 7504609dae6eSVaclav Hapla 7505a4e35b19SJacob Faibussowitsch Output Parameters: 75065efe38ccSVaclav Hapla + equal - (Optional) Flag whether labels of dm0 and dm1 are the same 750720f4b53cSBarry Smith - message - (Optional) Message describing the difference, or `NULL` if there is no difference 7508609dae6eSVaclav Hapla 7509609dae6eSVaclav Hapla Level: intermediate 7510609dae6eSVaclav Hapla 7511609dae6eSVaclav Hapla Notes: 7512bb7acecfSBarry Smith The output flag equal will be the same on all processes. 7513bb7acecfSBarry Smith 751420f4b53cSBarry Smith If equal is passed as `NULL` and difference is found, an error is thrown on all processes. 7515bb7acecfSBarry Smith 751620f4b53cSBarry Smith Make sure to pass equal is `NULL` on all processes or none of them. 7517609dae6eSVaclav Hapla 75185efe38ccSVaclav Hapla The output message is set independently on each rank. 7519bb7acecfSBarry Smith 7520bb7acecfSBarry Smith message must be freed with `PetscFree()` 7521bb7acecfSBarry Smith 752220f4b53cSBarry Smith If message is passed as `NULL` and a difference is found, the difference description is printed to stderr in synchronized manner. 7523bb7acecfSBarry Smith 752420f4b53cSBarry Smith Make sure to pass message as `NULL` on all processes or no processes. 7525609dae6eSVaclav Hapla 7526609dae6eSVaclav Hapla Labels are matched by name. If the number of labels and their names are equal, 7527bb7acecfSBarry Smith `DMLabelCompare()` is used to compare each pair of labels with the same name. 7528609dae6eSVaclav Hapla 75291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`, `DMLabelCompare()` 7530609dae6eSVaclav Hapla @*/ 7531d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompareLabels(DM dm0, DM dm1, PetscBool *equal, char **message) 7532d71ae5a4SJacob Faibussowitsch { 75335efe38ccSVaclav Hapla PetscInt n, i; 7534609dae6eSVaclav Hapla char msg[PETSC_MAX_PATH_LEN] = ""; 75355efe38ccSVaclav Hapla PetscBool eq; 7536609dae6eSVaclav Hapla MPI_Comm comm; 75375efe38ccSVaclav Hapla PetscMPIInt rank; 7538609dae6eSVaclav Hapla 7539609dae6eSVaclav Hapla PetscFunctionBegin; 7540609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm0, DM_CLASSID, 1); 7541609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm1, DM_CLASSID, 2); 7542609dae6eSVaclav Hapla PetscCheckSameComm(dm0, 1, dm1, 2); 75434f572ea9SToby Isaac if (equal) PetscAssertPointer(equal, 3); 75444f572ea9SToby Isaac if (message) PetscAssertPointer(message, 4); 75459566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm0, &comm)); 75469566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 75475efe38ccSVaclav Hapla { 75485efe38ccSVaclav Hapla PetscInt n1; 75495efe38ccSVaclav Hapla 75509566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm0, &n)); 75519566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm1, &n1)); 75525efe38ccSVaclav Hapla eq = (PetscBool)(n == n1); 755348a46eb9SPierre Jolivet if (!eq) PetscCall(PetscSNPrintf(msg, sizeof(msg), "Number of labels in dm0 = %" PetscInt_FMT " != %" PetscInt_FMT " = Number of labels in dm1", n, n1)); 7554712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 75555efe38ccSVaclav Hapla if (!eq) goto finish; 75565efe38ccSVaclav Hapla } 75575efe38ccSVaclav Hapla for (i = 0; i < n; i++) { 7558609dae6eSVaclav Hapla DMLabel l0, l1; 7559609dae6eSVaclav Hapla const char *name; 7560609dae6eSVaclav Hapla char *msgInner; 7561609dae6eSVaclav Hapla 7562609dae6eSVaclav Hapla /* Ignore label order */ 75639566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm0, i, &l0)); 75649566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)l0, &name)); 75659566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm1, name, &l1)); 7566609dae6eSVaclav Hapla if (!l1) { 756763a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(msg, sizeof(msg), "Label \"%s\" (#%" PetscInt_FMT " in dm0) not found in dm1", name, i)); 75685efe38ccSVaclav Hapla eq = PETSC_FALSE; 75695efe38ccSVaclav Hapla break; 7570609dae6eSVaclav Hapla } 75719566063dSJacob Faibussowitsch PetscCall(DMLabelCompare(comm, l0, l1, &eq, &msgInner)); 75729566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(msg, msgInner, sizeof(msg))); 75739566063dSJacob Faibussowitsch PetscCall(PetscFree(msgInner)); 75745efe38ccSVaclav Hapla if (!eq) break; 7575609dae6eSVaclav Hapla } 7576712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 7577609dae6eSVaclav Hapla finish: 75785efe38ccSVaclav Hapla /* If message output arg not set, print to stderr */ 7579609dae6eSVaclav Hapla if (message) { 7580609dae6eSVaclav Hapla *message = NULL; 758148a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscStrallocpy(msg, message)); 75825efe38ccSVaclav Hapla } else { 758348a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscSynchronizedFPrintf(comm, PETSC_STDERR, "[%d] %s\n", rank, msg)); 75849566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, PETSC_STDERR)); 75855efe38ccSVaclav Hapla } 75865efe38ccSVaclav Hapla /* If same output arg not ser and labels are not equal, throw error */ 75875efe38ccSVaclav Hapla if (equal) *equal = eq; 75887a8be351SBarry Smith else PetscCheck(eq, comm, PETSC_ERR_ARG_INCOMP, "DMLabels are not the same in dm0 and dm1"); 75893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7590609dae6eSVaclav Hapla } 7591609dae6eSVaclav Hapla 7592d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue_Fast(DM dm, DMLabel *label, const char name[], PetscInt point, PetscInt value) 7593d71ae5a4SJacob Faibussowitsch { 7594461a15a0SLisandro Dalcin PetscFunctionBegin; 75954f572ea9SToby Isaac PetscAssertPointer(label, 2); 7596461a15a0SLisandro Dalcin if (!*label) { 75979566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 75989566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, label)); 7599461a15a0SLisandro Dalcin } 76009566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(*label, point, value)); 76013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7602461a15a0SLisandro Dalcin } 7603461a15a0SLisandro Dalcin 76040fdc7489SMatthew Knepley /* 76050fdc7489SMatthew Knepley Many mesh programs, such as Triangle and TetGen, allow only a single label for each mesh point. Therefore, we would 76060fdc7489SMatthew Knepley like to encode all label IDs using a single, universal label. We can do this by assigning an integer to every 76070fdc7489SMatthew Knepley (label, id) pair in the DM. 76080fdc7489SMatthew Knepley 76090fdc7489SMatthew Knepley However, a mesh point can have multiple labels, so we must separate all these values. We will assign a bit range to 76100fdc7489SMatthew Knepley each label. 76110fdc7489SMatthew Knepley */ 7612d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreate(DM dm, DMUniversalLabel *universal) 7613d71ae5a4SJacob Faibussowitsch { 76140fdc7489SMatthew Knepley DMUniversalLabel ul; 76150fdc7489SMatthew Knepley PetscBool *active; 76160fdc7489SMatthew Knepley PetscInt pStart, pEnd, p, Nl, l, m; 76170fdc7489SMatthew Knepley 76180fdc7489SMatthew Knepley PetscFunctionBegin; 76199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &ul)); 76209566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "universal", &ul->label)); 76219566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 76229566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Nl, &active)); 76230fdc7489SMatthew Knepley ul->Nl = 0; 76240fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 76250fdc7489SMatthew Knepley PetscBool isdepth, iscelltype; 76260fdc7489SMatthew Knepley const char *name; 76270fdc7489SMatthew Knepley 76289566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 76299566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "depth", 6, &isdepth)); 76309566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "celltype", 9, &iscelltype)); 76310fdc7489SMatthew Knepley active[l] = !(isdepth || iscelltype) ? PETSC_TRUE : PETSC_FALSE; 76320fdc7489SMatthew Knepley if (active[l]) ++ul->Nl; 76330fdc7489SMatthew Knepley } 76349566063dSJacob Faibussowitsch PetscCall(PetscCalloc5(ul->Nl, &ul->names, ul->Nl, &ul->indices, ul->Nl + 1, &ul->offsets, ul->Nl + 1, &ul->bits, ul->Nl, &ul->masks)); 76350fdc7489SMatthew Knepley ul->Nv = 0; 76360fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 76370fdc7489SMatthew Knepley DMLabel label; 76380fdc7489SMatthew Knepley PetscInt nv; 76390fdc7489SMatthew Knepley const char *name; 76400fdc7489SMatthew Knepley 76410fdc7489SMatthew Knepley if (!active[l]) continue; 76429566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 76439566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 76449566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 76459566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(name, &ul->names[m])); 76460fdc7489SMatthew Knepley ul->indices[m] = l; 76470fdc7489SMatthew Knepley ul->Nv += nv; 76480fdc7489SMatthew Knepley ul->offsets[m + 1] = nv; 76490fdc7489SMatthew Knepley ul->bits[m + 1] = PetscCeilReal(PetscLog2Real(nv + 1)); 76500fdc7489SMatthew Knepley ++m; 76510fdc7489SMatthew Knepley } 76520fdc7489SMatthew Knepley for (l = 1; l <= ul->Nl; ++l) { 76530fdc7489SMatthew Knepley ul->offsets[l] = ul->offsets[l - 1] + ul->offsets[l]; 76540fdc7489SMatthew Knepley ul->bits[l] = ul->bits[l - 1] + ul->bits[l]; 76550fdc7489SMatthew Knepley } 76560fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 76570fdc7489SMatthew Knepley PetscInt b; 76580fdc7489SMatthew Knepley 76590fdc7489SMatthew Knepley ul->masks[l] = 0; 76600fdc7489SMatthew Knepley for (b = ul->bits[l]; b < ul->bits[l + 1]; ++b) ul->masks[l] |= 1 << b; 76610fdc7489SMatthew Knepley } 76629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ul->Nv, &ul->values)); 76630fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 76640fdc7489SMatthew Knepley DMLabel label; 76650fdc7489SMatthew Knepley IS valueIS; 76660fdc7489SMatthew Knepley const PetscInt *varr; 76670fdc7489SMatthew Knepley PetscInt nv, v; 76680fdc7489SMatthew Knepley 76690fdc7489SMatthew Knepley if (!active[l]) continue; 76709566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 76719566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 76729566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 76739566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &varr)); 7674ad540459SPierre Jolivet for (v = 0; v < nv; ++v) ul->values[ul->offsets[m] + v] = varr[v]; 76759566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &varr)); 76769566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 76779566063dSJacob Faibussowitsch PetscCall(PetscSortInt(nv, &ul->values[ul->offsets[m]])); 76780fdc7489SMatthew Knepley ++m; 76790fdc7489SMatthew Knepley } 76809566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 76810fdc7489SMatthew Knepley for (p = pStart; p < pEnd; ++p) { 76820fdc7489SMatthew Knepley PetscInt uval = 0; 76830fdc7489SMatthew Knepley PetscBool marked = PETSC_FALSE; 76840fdc7489SMatthew Knepley 76850fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 76860fdc7489SMatthew Knepley DMLabel label; 76870649b39aSStefano Zampini PetscInt val, defval, loc, nv; 76880fdc7489SMatthew Knepley 76890fdc7489SMatthew Knepley if (!active[l]) continue; 76909566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 76919566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, p, &val)); 76929566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defval)); 76939371c9d4SSatish Balay if (val == defval) { 76949371c9d4SSatish Balay ++m; 76959371c9d4SSatish Balay continue; 76969371c9d4SSatish Balay } 76970649b39aSStefano Zampini nv = ul->offsets[m + 1] - ul->offsets[m]; 76980fdc7489SMatthew Knepley marked = PETSC_TRUE; 76999566063dSJacob Faibussowitsch PetscCall(PetscFindInt(val, nv, &ul->values[ul->offsets[m]], &loc)); 770063a3b9bcSJacob Faibussowitsch PetscCheck(loc >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Label value %" PetscInt_FMT " not found in compression array", val); 77010fdc7489SMatthew Knepley uval += (loc + 1) << ul->bits[m]; 77020fdc7489SMatthew Knepley ++m; 77030fdc7489SMatthew Knepley } 77049566063dSJacob Faibussowitsch if (marked) PetscCall(DMLabelSetValue(ul->label, p, uval)); 77050fdc7489SMatthew Knepley } 77069566063dSJacob Faibussowitsch PetscCall(PetscFree(active)); 77070fdc7489SMatthew Knepley *universal = ul; 77083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77090fdc7489SMatthew Knepley } 77100fdc7489SMatthew Knepley 7711d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelDestroy(DMUniversalLabel *universal) 7712d71ae5a4SJacob Faibussowitsch { 77130fdc7489SMatthew Knepley PetscInt l; 77140fdc7489SMatthew Knepley 77150fdc7489SMatthew Knepley PetscFunctionBegin; 77169566063dSJacob Faibussowitsch for (l = 0; l < (*universal)->Nl; ++l) PetscCall(PetscFree((*universal)->names[l])); 77179566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&(*universal)->label)); 77189566063dSJacob Faibussowitsch PetscCall(PetscFree5((*universal)->names, (*universal)->indices, (*universal)->offsets, (*universal)->bits, (*universal)->masks)); 77199566063dSJacob Faibussowitsch PetscCall(PetscFree((*universal)->values)); 77209566063dSJacob Faibussowitsch PetscCall(PetscFree(*universal)); 77210fdc7489SMatthew Knepley *universal = NULL; 77223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77230fdc7489SMatthew Knepley } 77240fdc7489SMatthew Knepley 7725d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelGetLabel(DMUniversalLabel ul, DMLabel *ulabel) 7726d71ae5a4SJacob Faibussowitsch { 77270fdc7489SMatthew Knepley PetscFunctionBegin; 77284f572ea9SToby Isaac PetscAssertPointer(ulabel, 2); 77290fdc7489SMatthew Knepley *ulabel = ul->label; 77303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77310fdc7489SMatthew Knepley } 77320fdc7489SMatthew Knepley 7733d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreateLabels(DMUniversalLabel ul, PetscBool preserveOrder, DM dm) 7734d71ae5a4SJacob Faibussowitsch { 77350fdc7489SMatthew Knepley PetscInt Nl = ul->Nl, l; 77360fdc7489SMatthew Knepley 77370fdc7489SMatthew Knepley PetscFunctionBegin; 7738064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dm, DM_CLASSID, 3); 77390fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 77409566063dSJacob Faibussowitsch if (preserveOrder) PetscCall(DMCreateLabelAtIndex(dm, ul->indices[l], ul->names[l])); 77419566063dSJacob Faibussowitsch else PetscCall(DMCreateLabel(dm, ul->names[l])); 77420fdc7489SMatthew Knepley } 77430fdc7489SMatthew Knepley if (preserveOrder) { 77440fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 77450fdc7489SMatthew Knepley const char *name; 77460fdc7489SMatthew Knepley PetscBool match; 77470fdc7489SMatthew Knepley 77489566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, ul->indices[l], &name)); 77499566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, ul->names[l], &match)); 775063a3b9bcSJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Label %" PetscInt_FMT " name %s does not match new name %s", l, name, ul->names[l]); 77510fdc7489SMatthew Knepley } 77520fdc7489SMatthew Knepley } 77533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77540fdc7489SMatthew Knepley } 77550fdc7489SMatthew Knepley 7756d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelSetLabelValue(DMUniversalLabel ul, DM dm, PetscBool useIndex, PetscInt p, PetscInt value) 7757d71ae5a4SJacob Faibussowitsch { 77580fdc7489SMatthew Knepley PetscInt l; 77590fdc7489SMatthew Knepley 77600fdc7489SMatthew Knepley PetscFunctionBegin; 77610fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 77620fdc7489SMatthew Knepley DMLabel label; 77630fdc7489SMatthew Knepley PetscInt lval = (value & ul->masks[l]) >> ul->bits[l]; 77640fdc7489SMatthew Knepley 77650fdc7489SMatthew Knepley if (lval) { 77669566063dSJacob Faibussowitsch if (useIndex) PetscCall(DMGetLabelByNum(dm, ul->indices[l], &label)); 77679566063dSJacob Faibussowitsch else PetscCall(DMGetLabel(dm, ul->names[l], &label)); 77689566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, ul->values[ul->offsets[l] + lval - 1])); 77690fdc7489SMatthew Knepley } 77700fdc7489SMatthew Knepley } 77713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77720fdc7489SMatthew Knepley } 7773a8fb8f29SToby Isaac 7774a8fb8f29SToby Isaac /*@ 7775bb7acecfSBarry Smith DMGetCoarseDM - Get the coarse `DM`from which this `DM` was obtained by refinement 7776bb7acecfSBarry Smith 777720f4b53cSBarry Smith Not Collective 7778a8fb8f29SToby Isaac 7779a8fb8f29SToby Isaac Input Parameter: 7780bb7acecfSBarry Smith . dm - The `DM` object 7781a8fb8f29SToby Isaac 7782a8fb8f29SToby Isaac Output Parameter: 7783bb7acecfSBarry Smith . cdm - The coarse `DM` 7784a8fb8f29SToby Isaac 7785a8fb8f29SToby Isaac Level: intermediate 7786a8fb8f29SToby Isaac 77871cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetCoarseDM()`, `DMCoarsen()` 7788a8fb8f29SToby Isaac @*/ 7789d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarseDM(DM dm, DM *cdm) 7790d71ae5a4SJacob Faibussowitsch { 7791a8fb8f29SToby Isaac PetscFunctionBegin; 7792a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 77934f572ea9SToby Isaac PetscAssertPointer(cdm, 2); 7794a8fb8f29SToby Isaac *cdm = dm->coarseMesh; 77953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7796a8fb8f29SToby Isaac } 7797a8fb8f29SToby Isaac 7798a8fb8f29SToby Isaac /*@ 7799bb7acecfSBarry Smith DMSetCoarseDM - Set the coarse `DM` from which this `DM` was obtained by refinement 7800a8fb8f29SToby Isaac 7801a8fb8f29SToby Isaac Input Parameters: 7802bb7acecfSBarry Smith + dm - The `DM` object 7803bb7acecfSBarry Smith - cdm - The coarse `DM` 7804a8fb8f29SToby Isaac 7805a8fb8f29SToby Isaac Level: intermediate 7806a8fb8f29SToby Isaac 7807bb7acecfSBarry Smith Note: 7808bb7acecfSBarry Smith Normally this is set automatically by `DMRefine()` 7809bb7acecfSBarry Smith 78101cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCoarseDM()`, `DMCoarsen()`, `DMSetRefine()`, `DMSetFineDM()` 7811a8fb8f29SToby Isaac @*/ 7812d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarseDM(DM dm, DM cdm) 7813d71ae5a4SJacob Faibussowitsch { 7814a8fb8f29SToby Isaac PetscFunctionBegin; 7815a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7816a8fb8f29SToby Isaac if (cdm) PetscValidHeaderSpecific(cdm, DM_CLASSID, 2); 781789d734beSBarry Smith if (dm == cdm) cdm = NULL; 78189566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)cdm)); 78199566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->coarseMesh)); 7820a8fb8f29SToby Isaac dm->coarseMesh = cdm; 78213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7822a8fb8f29SToby Isaac } 7823a8fb8f29SToby Isaac 782488bdff64SToby Isaac /*@ 7825bb7acecfSBarry Smith DMGetFineDM - Get the fine mesh from which this `DM` was obtained by coarsening 782688bdff64SToby Isaac 782788bdff64SToby Isaac Input Parameter: 7828bb7acecfSBarry Smith . dm - The `DM` object 782988bdff64SToby Isaac 783088bdff64SToby Isaac Output Parameter: 7831bb7acecfSBarry Smith . fdm - The fine `DM` 783288bdff64SToby Isaac 783388bdff64SToby Isaac Level: intermediate 783488bdff64SToby Isaac 78351cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetFineDM()`, `DMCoarsen()`, `DMRefine()` 783688bdff64SToby Isaac @*/ 7837d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFineDM(DM dm, DM *fdm) 7838d71ae5a4SJacob Faibussowitsch { 783988bdff64SToby Isaac PetscFunctionBegin; 784088bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 78414f572ea9SToby Isaac PetscAssertPointer(fdm, 2); 784288bdff64SToby Isaac *fdm = dm->fineMesh; 78433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 784488bdff64SToby Isaac } 784588bdff64SToby Isaac 784688bdff64SToby Isaac /*@ 7847bb7acecfSBarry Smith DMSetFineDM - Set the fine mesh from which this was obtained by coarsening 784888bdff64SToby Isaac 784988bdff64SToby Isaac Input Parameters: 7850bb7acecfSBarry Smith + dm - The `DM` object 7851bb7acecfSBarry Smith - fdm - The fine `DM` 785288bdff64SToby Isaac 7853bb7acecfSBarry Smith Level: developer 785488bdff64SToby Isaac 7855bb7acecfSBarry Smith Note: 7856bb7acecfSBarry Smith Normally this is set automatically by `DMCoarsen()` 7857bb7acecfSBarry Smith 78581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFineDM()`, `DMCoarsen()`, `DMRefine()` 785988bdff64SToby Isaac @*/ 7860d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFineDM(DM dm, DM fdm) 7861d71ae5a4SJacob Faibussowitsch { 786288bdff64SToby Isaac PetscFunctionBegin; 786388bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 786488bdff64SToby Isaac if (fdm) PetscValidHeaderSpecific(fdm, DM_CLASSID, 2); 786589d734beSBarry Smith if (dm == fdm) fdm = NULL; 78669566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fdm)); 78679566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->fineMesh)); 786888bdff64SToby Isaac dm->fineMesh = fdm; 78693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 787088bdff64SToby Isaac } 787188bdff64SToby Isaac 7872a6ba4734SToby Isaac /*@C 7873bb7acecfSBarry Smith DMAddBoundary - Add a boundary condition to a model represented by a `DM` 7874a6ba4734SToby Isaac 787520f4b53cSBarry Smith Collective 7876783e2ec8SMatthew G. Knepley 7877a6ba4734SToby Isaac Input Parameters: 7878bb7acecfSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 7879bb7acecfSBarry Smith . type - The type of condition, e.g. `DM_BC_ESSENTIAL_ANALYTIC`, `DM_BC_ESSENTIAL_FIELD` (Dirichlet), or `DM_BC_NATURAL` (Neumann) 7880a6ba4734SToby Isaac . name - The BC name 788145480ffeSMatthew G. Knepley . label - The label defining constrained points 7882bb7acecfSBarry Smith . Nv - The number of `DMLabel` values for constrained points 788345480ffeSMatthew G. Knepley . values - An array of values for constrained points 7884a6ba4734SToby Isaac . field - The field to constrain 788545480ffeSMatthew G. Knepley . Nc - The number of constrained field components (0 will constrain all fields) 7886a6ba4734SToby Isaac . comps - An array of constrained component numbers 7887a6ba4734SToby Isaac . bcFunc - A pointwise function giving boundary values 788856cf3b9cSMatthew G. Knepley . bcFunc_t - A pointwise function giving the time deriative of the boundary values, or NULL 7889a6ba4734SToby Isaac - ctx - An optional user context for bcFunc 7890a6ba4734SToby Isaac 789145480ffeSMatthew G. Knepley Output Parameter: 789245480ffeSMatthew G. Knepley . bd - (Optional) Boundary number 789345480ffeSMatthew G. Knepley 7894a6ba4734SToby Isaac Options Database Keys: 7895a6ba4734SToby Isaac + -bc_<boundary name> <num> - Overrides the boundary ids 7896a6ba4734SToby Isaac - -bc_<boundary name>_comp <num> - Overrides the boundary components 7897a6ba4734SToby Isaac 789820f4b53cSBarry Smith Level: intermediate 789920f4b53cSBarry Smith 7900bb7acecfSBarry Smith Notes: 790137fdd005SBarry Smith Both bcFunc abd bcFunc_t will depend on the boundary condition type. If the type if `DM_BC_ESSENTIAL`, then the calling sequence is\: 790256cf3b9cSMatthew G. Knepley 790320f4b53cSBarry Smith $ void bcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[]) 790456cf3b9cSMatthew G. Knepley 7905a4e35b19SJacob Faibussowitsch If the type is `DM_BC_ESSENTIAL_FIELD` or other _FIELD value, then the calling sequence is\: 790656cf3b9cSMatthew G. Knepley 790720f4b53cSBarry Smith .vb 790820f4b53cSBarry Smith void bcFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux, 790920f4b53cSBarry Smith const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 791020f4b53cSBarry Smith const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 791120f4b53cSBarry Smith PetscReal time, const PetscReal x[], PetscScalar bcval[]) 791220f4b53cSBarry Smith .ve 791356cf3b9cSMatthew G. Knepley + dim - the spatial dimension 791456cf3b9cSMatthew G. Knepley . Nf - the number of fields 791556cf3b9cSMatthew G. Knepley . uOff - the offset into u[] and u_t[] for each field 791656cf3b9cSMatthew G. Knepley . uOff_x - the offset into u_x[] for each field 791756cf3b9cSMatthew G. Knepley . u - each field evaluated at the current point 791856cf3b9cSMatthew G. Knepley . u_t - the time derivative of each field evaluated at the current point 791956cf3b9cSMatthew G. Knepley . u_x - the gradient of each field evaluated at the current point 792056cf3b9cSMatthew G. Knepley . aOff - the offset into a[] and a_t[] for each auxiliary field 792156cf3b9cSMatthew G. Knepley . aOff_x - the offset into a_x[] for each auxiliary field 792256cf3b9cSMatthew G. Knepley . a - each auxiliary field evaluated at the current point 792356cf3b9cSMatthew G. Knepley . a_t - the time derivative of each auxiliary field evaluated at the current point 792456cf3b9cSMatthew G. Knepley . a_x - the gradient of auxiliary each field evaluated at the current point 792556cf3b9cSMatthew G. Knepley . t - current time 792656cf3b9cSMatthew G. Knepley . x - coordinates of the current point 792756cf3b9cSMatthew G. Knepley . numConstants - number of constant parameters 792856cf3b9cSMatthew G. Knepley . constants - constant parameters 792956cf3b9cSMatthew G. Knepley - bcval - output values at the current point 793056cf3b9cSMatthew G. Knepley 79311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DSGetBoundary()`, `PetscDSAddBoundary()` 7932a6ba4734SToby Isaac @*/ 7933d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddBoundary(DM dm, DMBoundaryConditionType type, const char name[], DMLabel label, PetscInt Nv, const PetscInt values[], PetscInt field, PetscInt Nc, const PetscInt comps[], void (*bcFunc)(void), void (*bcFunc_t)(void), void *ctx, PetscInt *bd) 7934d71ae5a4SJacob Faibussowitsch { 7935e5e52638SMatthew G. Knepley PetscDS ds; 7936a6ba4734SToby Isaac 7937a6ba4734SToby Isaac PetscFunctionBegin; 7938a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7939783e2ec8SMatthew G. Knepley PetscValidLogicalCollectiveEnum(dm, type, 2); 794045480ffeSMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 4); 794145480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nv, 5); 794245480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, field, 7); 794345480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 8); 794401a5d20dSJed Brown PetscCheck(!dm->localSection, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot add boundary to DM after creating local section"); 79459566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 7946799db056SMatthew G. Knepley /* Complete label */ 7947799db056SMatthew G. Knepley if (label) { 7948799db056SMatthew G. Knepley PetscObject obj; 7949799db056SMatthew G. Knepley PetscClassId id; 7950799db056SMatthew G. Knepley 7951799db056SMatthew G. Knepley PetscCall(DMGetField(dm, field, NULL, &obj)); 7952799db056SMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 7953799db056SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 7954799db056SMatthew G. Knepley DM plex; 7955799db056SMatthew G. Knepley 7956799db056SMatthew G. Knepley PetscCall(DMConvert(dm, DMPLEX, &plex)); 7957799db056SMatthew G. Knepley if (plex) PetscCall(DMPlexLabelComplete(plex, label)); 7958799db056SMatthew G. Knepley PetscCall(DMDestroy(&plex)); 7959799db056SMatthew G. Knepley } 7960799db056SMatthew G. Knepley } 79619566063dSJacob Faibussowitsch PetscCall(PetscDSAddBoundary(ds, type, name, label, Nv, values, field, Nc, comps, bcFunc, bcFunc_t, ctx, bd)); 79623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7963a6ba4734SToby Isaac } 7964a6ba4734SToby Isaac 796545480ffeSMatthew G. Knepley /* TODO Remove this since now the structures are the same */ 7966d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPopulateBoundary(DM dm) 7967d71ae5a4SJacob Faibussowitsch { 7968e5e52638SMatthew G. Knepley PetscDS ds; 7969dff059c6SToby Isaac DMBoundary *lastnext; 7970e6f8dbb6SToby Isaac DSBoundary dsbound; 7971e6f8dbb6SToby Isaac 7972e6f8dbb6SToby Isaac PetscFunctionBegin; 79739566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 7974e5e52638SMatthew G. Knepley dsbound = ds->boundary; 797547a1f5adSToby Isaac if (dm->boundary) { 797647a1f5adSToby Isaac DMBoundary next = dm->boundary; 797747a1f5adSToby Isaac 797847a1f5adSToby Isaac /* quick check to see if the PetscDS has changed */ 79793ba16761SJacob Faibussowitsch if (next->dsboundary == dsbound) PetscFunctionReturn(PETSC_SUCCESS); 798047a1f5adSToby Isaac /* the PetscDS has changed: tear down and rebuild */ 798147a1f5adSToby Isaac while (next) { 798247a1f5adSToby Isaac DMBoundary b = next; 798347a1f5adSToby Isaac 798447a1f5adSToby Isaac next = b->next; 79859566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 7986a6ba4734SToby Isaac } 798747a1f5adSToby Isaac dm->boundary = NULL; 7988a6ba4734SToby Isaac } 798947a1f5adSToby Isaac 7990f4f49eeaSPierre Jolivet lastnext = &dm->boundary; 7991e6f8dbb6SToby Isaac while (dsbound) { 7992e6f8dbb6SToby Isaac DMBoundary dmbound; 7993e6f8dbb6SToby Isaac 79949566063dSJacob Faibussowitsch PetscCall(PetscNew(&dmbound)); 7995e6f8dbb6SToby Isaac dmbound->dsboundary = dsbound; 799645480ffeSMatthew G. Knepley dmbound->label = dsbound->label; 799747a1f5adSToby Isaac /* push on the back instead of the front so that it is in the same order as in the PetscDS */ 7998dff059c6SToby Isaac *lastnext = dmbound; 7999f4f49eeaSPierre Jolivet lastnext = &dmbound->next; 8000dff059c6SToby Isaac dsbound = dsbound->next; 8001a6ba4734SToby Isaac } 80023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8003a6ba4734SToby Isaac } 8004a6ba4734SToby Isaac 8005bb7acecfSBarry Smith /* TODO: missing manual page */ 8006d71ae5a4SJacob Faibussowitsch PetscErrorCode DMIsBoundaryPoint(DM dm, PetscInt point, PetscBool *isBd) 8007d71ae5a4SJacob Faibussowitsch { 8008b95f2879SToby Isaac DMBoundary b; 8009a6ba4734SToby Isaac 8010a6ba4734SToby Isaac PetscFunctionBegin; 8011a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 80124f572ea9SToby Isaac PetscAssertPointer(isBd, 3); 8013a6ba4734SToby Isaac *isBd = PETSC_FALSE; 80149566063dSJacob Faibussowitsch PetscCall(DMPopulateBoundary(dm)); 8015b95f2879SToby Isaac b = dm->boundary; 8016a6ba4734SToby Isaac while (b && !(*isBd)) { 8017e6f8dbb6SToby Isaac DMLabel label = b->label; 8018e6f8dbb6SToby Isaac DSBoundary dsb = b->dsboundary; 8019a6ba4734SToby Isaac PetscInt i; 8020a6ba4734SToby Isaac 802145480ffeSMatthew G. Knepley if (label) { 80229566063dSJacob Faibussowitsch for (i = 0; i < dsb->Nv && !(*isBd); ++i) PetscCall(DMLabelStratumHasPoint(label, dsb->values[i], point, isBd)); 8023a6ba4734SToby Isaac } 8024a6ba4734SToby Isaac b = b->next; 8025a6ba4734SToby Isaac } 80263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8027a6ba4734SToby Isaac } 80284d6f44ffSToby Isaac 80294d6f44ffSToby Isaac /*@C 8030bb7acecfSBarry Smith DMProjectFunction - This projects the given function into the function space provided by a `DM`, putting the coefficients in a global vector. 8031a6e0b375SMatthew G. Knepley 803220f4b53cSBarry Smith Collective 80334d6f44ffSToby Isaac 80344d6f44ffSToby Isaac Input Parameters: 8035bb7acecfSBarry Smith + dm - The `DM` 80360709b2feSToby Isaac . time - The time 80374d6f44ffSToby Isaac . funcs - The coordinate functions to evaluate, one per field 80384d6f44ffSToby Isaac . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 80394d6f44ffSToby Isaac - mode - The insertion mode for values 80404d6f44ffSToby Isaac 80414d6f44ffSToby Isaac Output Parameter: 80424d6f44ffSToby Isaac . X - vector 80434d6f44ffSToby Isaac 804420f4b53cSBarry Smith Calling sequence of `funcs`: 80454d6f44ffSToby Isaac + dim - The spatial dimension 80468ec8862eSJed Brown . time - The time at which to sample 80474d6f44ffSToby Isaac . x - The coordinates 804877b739a6SMatthew Knepley . Nc - The number of components 80494d6f44ffSToby Isaac . u - The output field values 80504d6f44ffSToby Isaac - ctx - optional user-defined function context 80514d6f44ffSToby Isaac 80524d6f44ffSToby Isaac Level: developer 80534d6f44ffSToby Isaac 8054bb7acecfSBarry Smith Developer Notes: 8055bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8056bb7acecfSBarry Smith 8057bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8058bb7acecfSBarry Smith 80591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 80604d6f44ffSToby Isaac @*/ 8061a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunction(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X) 8062d71ae5a4SJacob Faibussowitsch { 80634d6f44ffSToby Isaac Vec localX; 80644d6f44ffSToby Isaac 80654d6f44ffSToby Isaac PetscFunctionBegin; 80664d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8067708be2fdSJed Brown PetscCall(PetscLogEventBegin(DM_ProjectFunction, dm, X, 0, 0)); 80689566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 8069f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 80709566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, mode, localX)); 80719566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 80729566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 80739566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 8074708be2fdSJed Brown PetscCall(PetscLogEventEnd(DM_ProjectFunction, dm, X, 0, 0)); 80753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 80764d6f44ffSToby Isaac } 80774d6f44ffSToby Isaac 8078a6e0b375SMatthew G. Knepley /*@C 8079bb7acecfSBarry Smith DMProjectFunctionLocal - This projects the given function into the function space provided by a `DM`, putting the coefficients in a local vector. 8080a6e0b375SMatthew G. Knepley 808120f4b53cSBarry Smith Not Collective 8082a6e0b375SMatthew G. Knepley 8083a6e0b375SMatthew G. Knepley Input Parameters: 8084bb7acecfSBarry Smith + dm - The `DM` 8085a6e0b375SMatthew G. Knepley . time - The time 8086a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8087a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 8088a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8089a6e0b375SMatthew G. Knepley 8090a6e0b375SMatthew G. Knepley Output Parameter: 8091a6e0b375SMatthew G. Knepley . localX - vector 8092a6e0b375SMatthew G. Knepley 809320f4b53cSBarry Smith Calling sequence of `funcs`: 8094a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8095a4e35b19SJacob Faibussowitsch . time - The current timestep 8096a6e0b375SMatthew G. Knepley . x - The coordinates 809777b739a6SMatthew Knepley . Nc - The number of components 8098a6e0b375SMatthew G. Knepley . u - The output field values 8099a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8100a6e0b375SMatthew G. Knepley 8101a6e0b375SMatthew G. Knepley Level: developer 8102a6e0b375SMatthew G. Knepley 8103bb7acecfSBarry Smith Developer Notes: 8104bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8105bb7acecfSBarry Smith 8106bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8107bb7acecfSBarry Smith 81081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 8109a6e0b375SMatthew G. Knepley @*/ 8110a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX) 8111d71ae5a4SJacob Faibussowitsch { 81124d6f44ffSToby Isaac PetscFunctionBegin; 81134d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8114064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 8115fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfunctionlocal, time, funcs, ctxs, mode, localX); 81163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 81174d6f44ffSToby Isaac } 81184d6f44ffSToby Isaac 8119a6e0b375SMatthew G. Knepley /*@C 8120bb7acecfSBarry Smith DMProjectFunctionLabel - This projects the given function into the function space provided by the `DM`, putting the coefficients in a global vector, setting values only for points in the given label. 8121a6e0b375SMatthew G. Knepley 812220f4b53cSBarry Smith Collective 8123a6e0b375SMatthew G. Knepley 8124a6e0b375SMatthew G. Knepley Input Parameters: 8125bb7acecfSBarry Smith + dm - The `DM` 8126a6e0b375SMatthew G. Knepley . time - The time 8127a4e35b19SJacob Faibussowitsch . numIds - The number of ids 8128a4e35b19SJacob Faibussowitsch . ids - The ids 8129a4e35b19SJacob Faibussowitsch . Nc - The number of components 8130a4e35b19SJacob Faibussowitsch . comps - The components 8131bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8132a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8133bb7acecfSBarry Smith . ctxs - Optional array of contexts to pass to each coordinate function. ctxs may be null. 8134a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8135a6e0b375SMatthew G. Knepley 8136a6e0b375SMatthew G. Knepley Output Parameter: 8137a6e0b375SMatthew G. Knepley . X - vector 8138a6e0b375SMatthew G. Knepley 813920f4b53cSBarry Smith Calling sequence of `funcs`: 8140a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8141a4e35b19SJacob Faibussowitsch . time - The current timestep 8142a6e0b375SMatthew G. Knepley . x - The coordinates 814377b739a6SMatthew Knepley . Nc - The number of components 8144a6e0b375SMatthew G. Knepley . u - The output field values 8145a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8146a6e0b375SMatthew G. Knepley 8147a6e0b375SMatthew G. Knepley Level: developer 8148a6e0b375SMatthew G. Knepley 8149bb7acecfSBarry Smith Developer Notes: 8150bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8151bb7acecfSBarry Smith 8152bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8153bb7acecfSBarry Smith 81541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`, `DMComputeL2Diff()` 8155a6e0b375SMatthew G. Knepley @*/ 8156a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X) 8157d71ae5a4SJacob Faibussowitsch { 81582c53366bSMatthew G. Knepley Vec localX; 81592c53366bSMatthew G. Knepley 81602c53366bSMatthew G. Knepley PetscFunctionBegin; 81612c53366bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 81629566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 8163f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 81649566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX)); 81659566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 81669566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 81679566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 81683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 81692c53366bSMatthew G. Knepley } 81702c53366bSMatthew G. Knepley 8171a6e0b375SMatthew G. Knepley /*@C 8172bb7acecfSBarry Smith DMProjectFunctionLabelLocal - This projects the given function into the function space provided by the `DM`, putting the coefficients in a local vector, setting values only for points in the given label. 8173a6e0b375SMatthew G. Knepley 817420f4b53cSBarry Smith Not Collective 8175a6e0b375SMatthew G. Knepley 8176a6e0b375SMatthew G. Knepley Input Parameters: 8177bb7acecfSBarry Smith + dm - The `DM` 8178a6e0b375SMatthew G. Knepley . time - The time 8179bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8180a4e35b19SJacob Faibussowitsch . numIds - The number of ids 8181a4e35b19SJacob Faibussowitsch . ids - The ids 8182a4e35b19SJacob Faibussowitsch . Nc - The number of components 8183a4e35b19SJacob Faibussowitsch . comps - The components 8184a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8185a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 8186a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8187a6e0b375SMatthew G. Knepley 8188a6e0b375SMatthew G. Knepley Output Parameter: 8189a6e0b375SMatthew G. Knepley . localX - vector 8190a6e0b375SMatthew G. Knepley 819120f4b53cSBarry Smith Calling sequence of `funcs`: 8192a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8193a4e35b19SJacob Faibussowitsch . time - The current time 8194a6e0b375SMatthew G. Knepley . x - The coordinates 819577b739a6SMatthew Knepley . Nc - The number of components 8196a6e0b375SMatthew G. Knepley . u - The output field values 8197a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8198a6e0b375SMatthew G. Knepley 8199a6e0b375SMatthew G. Knepley Level: developer 8200a6e0b375SMatthew G. Knepley 8201bb7acecfSBarry Smith Developer Notes: 8202bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8203bb7acecfSBarry Smith 8204bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8205bb7acecfSBarry Smith 82061cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 8207a6e0b375SMatthew G. Knepley @*/ 8208a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX) 8209d71ae5a4SJacob Faibussowitsch { 82104d6f44ffSToby Isaac PetscFunctionBegin; 82114d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8212064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8213fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfunctionlabellocal, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX); 82143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82154d6f44ffSToby Isaac } 82162716604bSToby Isaac 8217a6e0b375SMatthew G. Knepley /*@C 8218bb7acecfSBarry Smith DMProjectFieldLocal - This projects the given function of the input fields into the function space provided by the `DM`, putting the coefficients in a local vector. 8219a6e0b375SMatthew G. Knepley 822020f4b53cSBarry Smith Not Collective 8221a6e0b375SMatthew G. Knepley 8222a6e0b375SMatthew G. Knepley Input Parameters: 8223bb7acecfSBarry Smith + dm - The `DM` 8224a6e0b375SMatthew G. Knepley . time - The time 822520f4b53cSBarry Smith . localU - The input field vector; may be `NULL` if projection is defined purely by coordinates 8226a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8227a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8228a6e0b375SMatthew G. Knepley 8229a6e0b375SMatthew G. Knepley Output Parameter: 8230a6e0b375SMatthew G. Knepley . localX - The output vector 8231a6e0b375SMatthew G. Knepley 823220f4b53cSBarry Smith Calling sequence of `funcs`: 8233a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8234a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8235a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8236a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8237a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8238a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8239a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8240a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8241a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8242a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8243a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8244a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8245a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8246a6e0b375SMatthew G. Knepley . t - The current time 8247a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8248a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8249a6e0b375SMatthew G. Knepley . constants - The value of each constant 8250a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8251a6e0b375SMatthew G. Knepley 8252bb7acecfSBarry Smith Note: 8253bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8254bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8255bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8256a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8257a6e0b375SMatthew G. Knepley 8258a6e0b375SMatthew G. Knepley Level: intermediate 8259a6e0b375SMatthew G. Knepley 8260bb7acecfSBarry Smith Developer Notes: 8261bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8262bb7acecfSBarry Smith 8263bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8264bb7acecfSBarry Smith 8265a4e35b19SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, 8266a4e35b19SJacob Faibussowitsch `DMProjectFunction()`, `DMComputeL2Diff()` 8267a6e0b375SMatthew G. Knepley @*/ 8268a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLocal(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8269d71ae5a4SJacob Faibussowitsch { 82708c6c5593SMatthew G. Knepley PetscFunctionBegin; 82718c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8272eb8f539aSJed Brown if (localU) PetscValidHeaderSpecific(localU, VEC_CLASSID, 3); 82738c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 8274fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfieldlocal, time, localU, funcs, mode, localX); 82753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82768c6c5593SMatthew G. Knepley } 82778c6c5593SMatthew G. Knepley 8278a6e0b375SMatthew G. Knepley /*@C 8279a6e0b375SMatthew G. Knepley DMProjectFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain specified by the label. 8280a6e0b375SMatthew G. Knepley 828120f4b53cSBarry Smith Not Collective 8282a6e0b375SMatthew G. Knepley 8283a6e0b375SMatthew G. Knepley Input Parameters: 8284bb7acecfSBarry Smith + dm - The `DM` 8285a6e0b375SMatthew G. Knepley . time - The time 8286bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8287a6e0b375SMatthew G. Knepley . numIds - The number of label ids to use 8288a6e0b375SMatthew G. Knepley . ids - The label ids to use for marking 8289bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 829020f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8291a6e0b375SMatthew G. Knepley . localU - The input field vector 8292a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8293a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8294a6e0b375SMatthew G. Knepley 8295a6e0b375SMatthew G. Knepley Output Parameter: 8296a6e0b375SMatthew G. Knepley . localX - The output vector 8297a6e0b375SMatthew G. Knepley 829820f4b53cSBarry Smith Calling sequence of `funcs`: 8299a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8300a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8301a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8302a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8303a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8304a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8305a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8306a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8307a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8308a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8309a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8310a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8311a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8312a6e0b375SMatthew G. Knepley . t - The current time 8313a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8314a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8315a6e0b375SMatthew G. Knepley . constants - The value of each constant 8316a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8317a6e0b375SMatthew G. Knepley 8318bb7acecfSBarry Smith Note: 8319bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8320bb7acecfSBarry Smith The input `DM`, attached to localU, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8321bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8322a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8323a6e0b375SMatthew G. Knepley 8324a6e0b375SMatthew G. Knepley Level: intermediate 8325a6e0b375SMatthew G. Knepley 8326bb7acecfSBarry Smith Developer Notes: 8327bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8328bb7acecfSBarry Smith 8329bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8330bb7acecfSBarry Smith 83311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabel()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8332a6e0b375SMatthew G. Knepley @*/ 8333a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8334d71ae5a4SJacob Faibussowitsch { 83358c6c5593SMatthew G. Knepley PetscFunctionBegin; 83368c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8337064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8338064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8339fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX); 83403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 83418c6c5593SMatthew G. Knepley } 83428c6c5593SMatthew G. Knepley 83432716604bSToby Isaac /*@C 8344d29d7c6eSMatthew G. Knepley DMProjectFieldLabel - This projects the given function of the input fields into the function space provided, putting the coefficients in a global vector, calculating only over the portion of the domain specified by the label. 8345d29d7c6eSMatthew G. Knepley 834620f4b53cSBarry Smith Not Collective 8347d29d7c6eSMatthew G. Knepley 8348d29d7c6eSMatthew G. Knepley Input Parameters: 8349bb7acecfSBarry Smith + dm - The `DM` 8350d29d7c6eSMatthew G. Knepley . time - The time 8351bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8352d29d7c6eSMatthew G. Knepley . numIds - The number of label ids to use 8353d29d7c6eSMatthew G. Knepley . ids - The label ids to use for marking 8354bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 835520f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8356d29d7c6eSMatthew G. Knepley . U - The input field vector 8357d29d7c6eSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8358d29d7c6eSMatthew G. Knepley - mode - The insertion mode for values 8359d29d7c6eSMatthew G. Knepley 8360d29d7c6eSMatthew G. Knepley Output Parameter: 8361d29d7c6eSMatthew G. Knepley . X - The output vector 8362d29d7c6eSMatthew G. Knepley 836320f4b53cSBarry Smith Calling sequence of `funcs`: 8364d29d7c6eSMatthew G. Knepley + dim - The spatial dimension 8365d29d7c6eSMatthew G. Knepley . Nf - The number of input fields 8366d29d7c6eSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8367d29d7c6eSMatthew G. Knepley . uOff - The offset of each field in u[] 8368d29d7c6eSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8369d29d7c6eSMatthew G. Knepley . u - The field values at this point in space 8370d29d7c6eSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8371d29d7c6eSMatthew G. Knepley . u_x - The field derivatives at this point in space 8372d29d7c6eSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8373d29d7c6eSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8374d29d7c6eSMatthew G. Knepley . a - The auxiliary field values at this point in space 8375d29d7c6eSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8376d29d7c6eSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8377d29d7c6eSMatthew G. Knepley . t - The current time 8378d29d7c6eSMatthew G. Knepley . x - The coordinates of this point 8379d29d7c6eSMatthew G. Knepley . numConstants - The number of constants 8380d29d7c6eSMatthew G. Knepley . constants - The value of each constant 8381d29d7c6eSMatthew G. Knepley - f - The value of the function at this point in space 8382d29d7c6eSMatthew G. Knepley 8383bb7acecfSBarry Smith Note: 8384bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8385bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8386bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8387d29d7c6eSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8388d29d7c6eSMatthew G. Knepley 8389d29d7c6eSMatthew G. Knepley Level: intermediate 8390d29d7c6eSMatthew G. Knepley 8391bb7acecfSBarry Smith Developer Notes: 8392bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8393bb7acecfSBarry Smith 8394bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8395bb7acecfSBarry Smith 83961cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8397d29d7c6eSMatthew G. Knepley @*/ 8398a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec U, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec X) 8399d71ae5a4SJacob Faibussowitsch { 8400d29d7c6eSMatthew G. Knepley DM dmIn; 8401d29d7c6eSMatthew G. Knepley Vec localU, localX; 8402d29d7c6eSMatthew G. Knepley 8403d29d7c6eSMatthew G. Knepley PetscFunctionBegin; 8404d29d7c6eSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8405d29d7c6eSMatthew G. Knepley PetscCall(VecGetDM(U, &dmIn)); 8406d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dmIn, &localU)); 8407d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &localX)); 8408f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 840972fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalBegin(dmIn, U, mode, localU)); 841072fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalEnd(dmIn, U, mode, localU)); 8411d29d7c6eSMatthew G. Knepley PetscCall(DMProjectFieldLabelLocal(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX)); 8412d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 8413d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 8414d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &localX)); 8415d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dmIn, &localU)); 84163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8417d29d7c6eSMatthew G. Knepley } 8418d29d7c6eSMatthew G. Knepley 8419d29d7c6eSMatthew G. Knepley /*@C 8420ece3a9fcSMatthew G. Knepley DMProjectBdFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain boundary specified by the label. 8421ece3a9fcSMatthew G. Knepley 842220f4b53cSBarry Smith Not Collective 8423ece3a9fcSMatthew G. Knepley 8424ece3a9fcSMatthew G. Knepley Input Parameters: 8425bb7acecfSBarry Smith + dm - The `DM` 8426ece3a9fcSMatthew G. Knepley . time - The time 8427bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain boundary to output 8428ece3a9fcSMatthew G. Knepley . numIds - The number of label ids to use 8429ece3a9fcSMatthew G. Knepley . ids - The label ids to use for marking 8430bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 843120f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8432ece3a9fcSMatthew G. Knepley . localU - The input field vector 8433ece3a9fcSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8434ece3a9fcSMatthew G. Knepley - mode - The insertion mode for values 8435ece3a9fcSMatthew G. Knepley 8436ece3a9fcSMatthew G. Knepley Output Parameter: 8437ece3a9fcSMatthew G. Knepley . localX - The output vector 8438ece3a9fcSMatthew G. Knepley 843920f4b53cSBarry Smith Calling sequence of `funcs`: 8440ece3a9fcSMatthew G. Knepley + dim - The spatial dimension 8441ece3a9fcSMatthew G. Knepley . Nf - The number of input fields 8442ece3a9fcSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8443ece3a9fcSMatthew G. Knepley . uOff - The offset of each field in u[] 8444ece3a9fcSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8445ece3a9fcSMatthew G. Knepley . u - The field values at this point in space 8446ece3a9fcSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8447ece3a9fcSMatthew G. Knepley . u_x - The field derivatives at this point in space 8448ece3a9fcSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8449ece3a9fcSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8450ece3a9fcSMatthew G. Knepley . a - The auxiliary field values at this point in space 8451ece3a9fcSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8452ece3a9fcSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8453ece3a9fcSMatthew G. Knepley . t - The current time 8454ece3a9fcSMatthew G. Knepley . x - The coordinates of this point 8455ece3a9fcSMatthew G. Knepley . n - The face normal 8456ece3a9fcSMatthew G. Knepley . numConstants - The number of constants 8457ece3a9fcSMatthew G. Knepley . constants - The value of each constant 8458ece3a9fcSMatthew G. Knepley - f - The value of the function at this point in space 8459ece3a9fcSMatthew G. Knepley 8460ece3a9fcSMatthew G. Knepley Note: 8461bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8462bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8463bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8464ece3a9fcSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8465ece3a9fcSMatthew G. Knepley 8466ece3a9fcSMatthew G. Knepley Level: intermediate 8467ece3a9fcSMatthew G. Knepley 8468bb7acecfSBarry Smith Developer Notes: 8469bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8470bb7acecfSBarry Smith 8471bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8472bb7acecfSBarry Smith 84731cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8474ece3a9fcSMatthew G. Knepley @*/ 8475a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectBdFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8476d71ae5a4SJacob Faibussowitsch { 8477ece3a9fcSMatthew G. Knepley PetscFunctionBegin; 8478ece3a9fcSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8479064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8480064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8481fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectbdfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX); 84823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8483ece3a9fcSMatthew G. Knepley } 8484ece3a9fcSMatthew G. Knepley 8485ece3a9fcSMatthew G. Knepley /*@C 84862716604bSToby Isaac DMComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 84872716604bSToby Isaac 848820f4b53cSBarry Smith Collective 8489bb7acecfSBarry Smith 84902716604bSToby Isaac Input Parameters: 8491bb7acecfSBarry Smith + dm - The `DM` 84920709b2feSToby Isaac . time - The time 84932716604bSToby Isaac . funcs - The functions to evaluate for each field component 84942716604bSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8495574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 84962716604bSToby Isaac 84972716604bSToby Isaac Output Parameter: 84982716604bSToby Isaac . diff - The diff ||u - u_h||_2 84992716604bSToby Isaac 85002716604bSToby Isaac Level: developer 85012716604bSToby Isaac 8502bb7acecfSBarry Smith Developer Notes: 8503bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8504bb7acecfSBarry Smith 8505bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8506bb7acecfSBarry Smith 85071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 85082716604bSToby Isaac @*/ 8509d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 8510d71ae5a4SJacob Faibussowitsch { 85112716604bSToby Isaac PetscFunctionBegin; 85122716604bSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8513b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8514fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2diff, time, funcs, ctxs, X, diff); 85153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 85162716604bSToby Isaac } 8517b698f381SToby Isaac 8518b698f381SToby Isaac /*@C 8519b698f381SToby Isaac DMComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h. 8520b698f381SToby Isaac 852120f4b53cSBarry Smith Collective 8522d083f849SBarry Smith 8523b698f381SToby Isaac Input Parameters: 8524bb7acecfSBarry Smith + dm - The `DM` 8525a4e35b19SJacob Faibussowitsch . time - The time 8526b698f381SToby Isaac . funcs - The gradient functions to evaluate for each field component 8527b698f381SToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8528574a98acSMatthew G. Knepley . X - The coefficient vector u_h, a global vector 8529b698f381SToby Isaac - n - The vector to project along 8530b698f381SToby Isaac 8531b698f381SToby Isaac Output Parameter: 8532b698f381SToby Isaac . diff - The diff ||(grad u - grad u_h) . n||_2 8533b698f381SToby Isaac 8534b698f381SToby Isaac Level: developer 8535b698f381SToby Isaac 8536bb7acecfSBarry Smith Developer Notes: 8537bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8538bb7acecfSBarry Smith 8539bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8540bb7acecfSBarry Smith 85411cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMComputeL2FieldDiff()` 8542b698f381SToby Isaac @*/ 8543d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 8544d71ae5a4SJacob Faibussowitsch { 8545b698f381SToby Isaac PetscFunctionBegin; 8546b698f381SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8547b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8548fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2gradientdiff, time, funcs, ctxs, X, n, diff); 85493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8550b698f381SToby Isaac } 8551b698f381SToby Isaac 85522a16baeaSToby Isaac /*@C 85532a16baeaSToby Isaac DMComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components. 85542a16baeaSToby Isaac 855520f4b53cSBarry Smith Collective 8556d083f849SBarry Smith 85572a16baeaSToby Isaac Input Parameters: 8558bb7acecfSBarry Smith + dm - The `DM` 85592a16baeaSToby Isaac . time - The time 85602a16baeaSToby Isaac . funcs - The functions to evaluate for each field component 85612a16baeaSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8562574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 85632a16baeaSToby Isaac 85642a16baeaSToby Isaac Output Parameter: 85652a16baeaSToby Isaac . diff - The array of differences, ||u^f - u^f_h||_2 85662a16baeaSToby Isaac 85672a16baeaSToby Isaac Level: developer 85682a16baeaSToby Isaac 8569bb7acecfSBarry Smith Developer Notes: 8570bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8571bb7acecfSBarry Smith 8572bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8573bb7acecfSBarry Smith 857442747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2GradientDiff()` 85752a16baeaSToby Isaac @*/ 8576d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[]) 8577d71ae5a4SJacob Faibussowitsch { 85782a16baeaSToby Isaac PetscFunctionBegin; 85792a16baeaSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 85802a16baeaSToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8581fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2fielddiff, time, funcs, ctxs, X, diff); 85823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 85832a16baeaSToby Isaac } 85842a16baeaSToby Isaac 8585df0b854cSToby Isaac /*@C 8586bb7acecfSBarry Smith DMGetNeighbors - Gets an array containing the MPI ranks of all the processes neighbors 8587502a2867SDave May 8588502a2867SDave May Not Collective 8589502a2867SDave May 8590502a2867SDave May Input Parameter: 8591bb7acecfSBarry Smith . dm - The `DM` 8592502a2867SDave May 85930a19bb7dSprj- Output Parameters: 85940a19bb7dSprj- + nranks - the number of neighbours 85950a19bb7dSprj- - ranks - the neighbors ranks 8596502a2867SDave May 85979bdbcad8SBarry Smith Level: beginner 85989bdbcad8SBarry Smith 8599bb7acecfSBarry Smith Note: 8600bb7acecfSBarry Smith Do not free the array, it is freed when the `DM` is destroyed. 8601502a2867SDave May 86021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDAGetNeighbors()`, `PetscSFGetRootRanks()` 8603502a2867SDave May @*/ 8604d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNeighbors(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[]) 8605d71ae5a4SJacob Faibussowitsch { 8606502a2867SDave May PetscFunctionBegin; 8607502a2867SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8608fa1e479aSStefano Zampini PetscUseTypeMethod(dm, getneighbors, nranks, ranks); 86093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8610502a2867SDave May } 8611502a2867SDave May 8612531c7667SBarry Smith #include <petsc/private/matimpl.h> /* Needed because of coloring->ctype below */ 8613531c7667SBarry Smith 8614531c7667SBarry Smith /* 8615531c7667SBarry Smith Converts the input vector to a ghosted vector and then calls the standard coloring code. 86162b6f951bSStefano Zampini This must be a different function because it requires DM which is not defined in the Mat library 8617531c7667SBarry Smith */ 861866976f2fSJacob Faibussowitsch static PetscErrorCode MatFDColoringApply_AIJDM(Mat J, MatFDColoring coloring, Vec x1, void *sctx) 8619d71ae5a4SJacob Faibussowitsch { 8620531c7667SBarry Smith PetscFunctionBegin; 8621531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8622531c7667SBarry Smith Vec x1local; 8623531c7667SBarry Smith DM dm; 86249566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 86257a8be351SBarry Smith PetscCheck(dm, PetscObjectComm((PetscObject)J), PETSC_ERR_ARG_INCOMP, "IS_COLORING_LOCAL requires a DM"); 86269566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &x1local)); 86279566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, x1, INSERT_VALUES, x1local)); 86289566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, x1, INSERT_VALUES, x1local)); 8629531c7667SBarry Smith x1 = x1local; 8630531c7667SBarry Smith } 86319566063dSJacob Faibussowitsch PetscCall(MatFDColoringApply_AIJ(J, coloring, x1, sctx)); 8632531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8633531c7667SBarry Smith DM dm; 86349566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 86359566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &x1)); 8636531c7667SBarry Smith } 86373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8638531c7667SBarry Smith } 8639531c7667SBarry Smith 8640531c7667SBarry Smith /*@ 8641bb7acecfSBarry Smith MatFDColoringUseDM - allows a `MatFDColoring` object to use the `DM` associated with the matrix to compute a `IS_COLORING_LOCAL` coloring 8642531c7667SBarry Smith 8643a4e35b19SJacob Faibussowitsch Input Parameters: 8644a4e35b19SJacob Faibussowitsch + coloring - The matrix to get the `DM` from 8645a4e35b19SJacob Faibussowitsch - fdcoloring - the `MatFDColoring` object 8646531c7667SBarry Smith 86479bdbcad8SBarry Smith Level: advanced 86489bdbcad8SBarry Smith 864960225df5SJacob Faibussowitsch Developer Notes: 8650bb7acecfSBarry Smith this routine exists because the PETSc `Mat` library does not know about the `DM` objects 8651531c7667SBarry Smith 86521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatFDColoring`, `MatFDColoringCreate()`, `ISColoringType` 8653531c7667SBarry Smith @*/ 8654d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringUseDM(Mat coloring, MatFDColoring fdcoloring) 8655d71ae5a4SJacob Faibussowitsch { 8656531c7667SBarry Smith PetscFunctionBegin; 8657531c7667SBarry Smith coloring->ops->fdcoloringapply = MatFDColoringApply_AIJDM; 86583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8659531c7667SBarry Smith } 86608320bc6fSPatrick Sanan 86618320bc6fSPatrick Sanan /*@ 8662bb7acecfSBarry Smith DMGetCompatibility - determine if two `DM`s are compatible 86638320bc6fSPatrick Sanan 86648320bc6fSPatrick Sanan Collective 86658320bc6fSPatrick Sanan 86668320bc6fSPatrick Sanan Input Parameters: 8667bb7acecfSBarry Smith + dm1 - the first `DM` 8668bb7acecfSBarry Smith - dm2 - the second `DM` 86698320bc6fSPatrick Sanan 86708320bc6fSPatrick Sanan Output Parameters: 8671bb7acecfSBarry Smith + compatible - whether or not the two `DM`s are compatible 8672bb7acecfSBarry Smith - set - whether or not the compatible value was actually determined and set 86738320bc6fSPatrick Sanan 867420f4b53cSBarry Smith Level: advanced 867520f4b53cSBarry Smith 86768320bc6fSPatrick Sanan Notes: 8677bb7acecfSBarry Smith Two `DM`s are deemed compatible if they represent the same parallel decomposition 86783d862458SPatrick Sanan of the same topology. This implies that the section (field data) on one 86798320bc6fSPatrick Sanan "makes sense" with respect to the topology and parallel decomposition of the other. 8680bb7acecfSBarry Smith Loosely speaking, compatible `DM`s represent the same domain and parallel 86813d862458SPatrick Sanan decomposition, but hold different data. 86828320bc6fSPatrick Sanan 86838320bc6fSPatrick Sanan Typically, one would confirm compatibility if intending to simultaneously iterate 8684bb7acecfSBarry Smith over a pair of vectors obtained from different `DM`s. 86858320bc6fSPatrick Sanan 8686bb7acecfSBarry Smith For example, two `DMDA` objects are compatible if they have the same local 86878320bc6fSPatrick Sanan and global sizes and the same stencil width. They can have different numbers 86888320bc6fSPatrick Sanan of degrees of freedom per node. Thus, one could use the node numbering from 8689bb7acecfSBarry Smith either `DM` in bounds for a loop over vectors derived from either `DM`. 86908320bc6fSPatrick Sanan 8691bb7acecfSBarry Smith Consider the operation of summing data living on a 2-dof `DMDA` to data living 8692bb7acecfSBarry Smith on a 1-dof `DMDA`, which should be compatible, as in the following snippet. 86938320bc6fSPatrick Sanan .vb 86948320bc6fSPatrick Sanan ... 86959566063dSJacob Faibussowitsch PetscCall(DMGetCompatibility(da1,da2,&compatible,&set)); 86968320bc6fSPatrick Sanan if (set && compatible) { 86979566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da1,vec1,&arr1)); 86989566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da2,vec2,&arr2)); 86999566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da1,&x,&y,NULL,&m,&n,NULL)); 87008320bc6fSPatrick Sanan for (j=y; j<y+n; ++j) { 87018320bc6fSPatrick Sanan for (i=x; i<x+m, ++i) { 87028320bc6fSPatrick Sanan arr1[j][i][0] = arr2[j][i][0] + arr2[j][i][1]; 87038320bc6fSPatrick Sanan } 87048320bc6fSPatrick Sanan } 87059566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da1,vec1,&arr1)); 87069566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da2,vec2,&arr2)); 87078320bc6fSPatrick Sanan } else { 87088320bc6fSPatrick Sanan SETERRQ(PetscObjectComm((PetscObject)da1,PETSC_ERR_ARG_INCOMP,"DMDA objects incompatible"); 87098320bc6fSPatrick Sanan } 87108320bc6fSPatrick Sanan ... 87118320bc6fSPatrick Sanan .ve 87128320bc6fSPatrick Sanan 8713bb7acecfSBarry Smith Checking compatibility might be expensive for a given implementation of `DM`, 87148320bc6fSPatrick Sanan or might be impossible to unambiguously confirm or deny. For this reason, 87158320bc6fSPatrick Sanan this function may decline to determine compatibility, and hence users should 87168320bc6fSPatrick Sanan always check the "set" output parameter. 87178320bc6fSPatrick Sanan 8718bb7acecfSBarry Smith A `DM` is always compatible with itself. 87198320bc6fSPatrick Sanan 8720bb7acecfSBarry Smith In the current implementation, `DM`s which live on "unequal" communicators 87218320bc6fSPatrick Sanan (MPI_UNEQUAL in the terminology of MPI_Comm_compare()) are always deemed 87228320bc6fSPatrick Sanan incompatible. 87238320bc6fSPatrick Sanan 87248320bc6fSPatrick Sanan This function is labeled "Collective," as information about all subdomains 8725bb7acecfSBarry Smith is required on each rank. However, in `DM` implementations which store all this 87268320bc6fSPatrick Sanan information locally, this function may be merely "Logically Collective". 87278320bc6fSPatrick Sanan 872860225df5SJacob Faibussowitsch Developer Notes: 8729bb7acecfSBarry Smith Compatibility is assumed to be a symmetric concept; `DM` A is compatible with `DM` B 87303d862458SPatrick Sanan iff B is compatible with A. Thus, this function checks the implementations 8731a5bc1bf3SBarry Smith of both dm and dmc (if they are of different types), attempting to determine 8732bb7acecfSBarry Smith compatibility. It is left to `DM` implementers to ensure that symmetry is 87338320bc6fSPatrick Sanan preserved. The simplest way to do this is, when implementing type-specific 87343d862458SPatrick Sanan logic for this function, is to check for existing logic in the implementation 8735bb7acecfSBarry Smith of other `DM` types and let *set = PETSC_FALSE if found. 87368320bc6fSPatrick Sanan 87371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreateCompatibleDMDA()`, `DMStagCreateCompatibleDMStag()` 87388320bc6fSPatrick Sanan @*/ 8739d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCompatibility(DM dm1, DM dm2, PetscBool *compatible, PetscBool *set) 8740d71ae5a4SJacob Faibussowitsch { 87418320bc6fSPatrick Sanan PetscMPIInt compareResult; 87428320bc6fSPatrick Sanan DMType type, type2; 87438320bc6fSPatrick Sanan PetscBool sameType; 87448320bc6fSPatrick Sanan 87458320bc6fSPatrick Sanan PetscFunctionBegin; 8746a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dm1, DM_CLASSID, 1); 87478320bc6fSPatrick Sanan PetscValidHeaderSpecific(dm2, DM_CLASSID, 2); 87488320bc6fSPatrick Sanan 87498320bc6fSPatrick Sanan /* Declare a DM compatible with itself */ 8750a5bc1bf3SBarry Smith if (dm1 == dm2) { 87518320bc6fSPatrick Sanan *set = PETSC_TRUE; 87528320bc6fSPatrick Sanan *compatible = PETSC_TRUE; 87533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 87548320bc6fSPatrick Sanan } 87558320bc6fSPatrick Sanan 87568320bc6fSPatrick Sanan /* Declare a DM incompatible with a DM that lives on an "unequal" 87578320bc6fSPatrick Sanan communicator. Note that this does not preclude compatibility with 87588320bc6fSPatrick Sanan DMs living on "congruent" or "similar" communicators, but this must be 87598320bc6fSPatrick Sanan determined by the implementation-specific logic */ 87609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)dm1), PetscObjectComm((PetscObject)dm2), &compareResult)); 87618320bc6fSPatrick Sanan if (compareResult == MPI_UNEQUAL) { 87628320bc6fSPatrick Sanan *set = PETSC_TRUE; 87638320bc6fSPatrick Sanan *compatible = PETSC_FALSE; 87643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 87658320bc6fSPatrick Sanan } 87668320bc6fSPatrick Sanan 87678320bc6fSPatrick Sanan /* Pass to the implementation-specific routine, if one exists. */ 8768a5bc1bf3SBarry Smith if (dm1->ops->getcompatibility) { 8769dbbe0bcdSBarry Smith PetscUseTypeMethod(dm1, getcompatibility, dm2, compatible, set); 87703ba16761SJacob Faibussowitsch if (*set) PetscFunctionReturn(PETSC_SUCCESS); 87718320bc6fSPatrick Sanan } 87728320bc6fSPatrick Sanan 8773a5bc1bf3SBarry Smith /* If dm1 and dm2 are of different types, then attempt to check compatibility 87748320bc6fSPatrick Sanan with an implementation of this function from dm2 */ 87759566063dSJacob Faibussowitsch PetscCall(DMGetType(dm1, &type)); 87769566063dSJacob Faibussowitsch PetscCall(DMGetType(dm2, &type2)); 87779566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(type, type2, &sameType)); 87788320bc6fSPatrick Sanan if (!sameType && dm2->ops->getcompatibility) { 8779dbbe0bcdSBarry Smith PetscUseTypeMethod(dm2, getcompatibility, dm1, compatible, set); /* Note argument order */ 87808320bc6fSPatrick Sanan } else { 87818320bc6fSPatrick Sanan *set = PETSC_FALSE; 87828320bc6fSPatrick Sanan } 87833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 87848320bc6fSPatrick Sanan } 8785c0f0dcc3SMatthew G. Knepley 8786c0f0dcc3SMatthew G. Knepley /*@C 8787bb7acecfSBarry Smith DMMonitorSet - Sets an additional monitor function that is to be used after a solve to monitor discretization performance. 8788c0f0dcc3SMatthew G. Knepley 878920f4b53cSBarry Smith Logically Collective 8790c0f0dcc3SMatthew G. Knepley 8791c0f0dcc3SMatthew G. Knepley Input Parameters: 879260225df5SJacob Faibussowitsch + dm - the `DM` 8793c0f0dcc3SMatthew G. Knepley . f - the monitor function 879420f4b53cSBarry Smith . mctx - [optional] user-defined context for private data for the monitor routine (use `NULL` if no context is desired) 879520f4b53cSBarry Smith - monitordestroy - [optional] routine that frees monitor context (may be `NULL`) 8796c0f0dcc3SMatthew G. Knepley 879720f4b53cSBarry Smith Options Database Key: 879860225df5SJacob Faibussowitsch . -dm_monitor_cancel - cancels all monitors that have been hardwired into a code by calls to `DMMonitorSet()`, but 8799c0f0dcc3SMatthew G. Knepley does not cancel those set via the options database. 8800c0f0dcc3SMatthew G. Knepley 88019bdbcad8SBarry Smith Level: intermediate 88029bdbcad8SBarry Smith 8803bb7acecfSBarry Smith Note: 8804c0f0dcc3SMatthew G. Knepley Several different monitoring routines may be set by calling 8805bb7acecfSBarry Smith `DMMonitorSet()` multiple times or with `DMMonitorSetFromOptions()`; all will be called in the 8806c0f0dcc3SMatthew G. Knepley order in which they were set. 8807c0f0dcc3SMatthew G. Knepley 880860225df5SJacob Faibussowitsch Fortran Notes: 8809bb7acecfSBarry Smith Only a single monitor function can be set for each `DM` object 8810bb7acecfSBarry Smith 881160225df5SJacob Faibussowitsch Developer Notes: 8812bb7acecfSBarry Smith This API has a generic name but seems specific to a very particular aspect of the use of `DM` 8813c0f0dcc3SMatthew G. Knepley 88141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorCancel()`, `DMMonitorSetFromOptions()`, `DMMonitor()` 8815c0f0dcc3SMatthew G. Knepley @*/ 8816d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSet(DM dm, PetscErrorCode (*f)(DM, void *), void *mctx, PetscErrorCode (*monitordestroy)(void **)) 8817d71ae5a4SJacob Faibussowitsch { 8818c0f0dcc3SMatthew G. Knepley PetscInt m; 8819c0f0dcc3SMatthew G. Knepley 8820c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8821c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8822c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 8823c0f0dcc3SMatthew G. Knepley PetscBool identical; 8824c0f0dcc3SMatthew G. Knepley 88259566063dSJacob Faibussowitsch PetscCall(PetscMonitorCompare((PetscErrorCode(*)(void))f, mctx, monitordestroy, (PetscErrorCode(*)(void))dm->monitor[m], dm->monitorcontext[m], dm->monitordestroy[m], &identical)); 88263ba16761SJacob Faibussowitsch if (identical) PetscFunctionReturn(PETSC_SUCCESS); 8827c0f0dcc3SMatthew G. Knepley } 88287a8be351SBarry Smith PetscCheck(dm->numbermonitors < MAXDMMONITORS, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many monitors set"); 8829c0f0dcc3SMatthew G. Knepley dm->monitor[dm->numbermonitors] = f; 8830c0f0dcc3SMatthew G. Knepley dm->monitordestroy[dm->numbermonitors] = monitordestroy; 8831c0f0dcc3SMatthew G. Knepley dm->monitorcontext[dm->numbermonitors++] = (void *)mctx; 88323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8833c0f0dcc3SMatthew G. Knepley } 8834c0f0dcc3SMatthew G. Knepley 8835c0f0dcc3SMatthew G. Knepley /*@ 8836bb7acecfSBarry Smith DMMonitorCancel - Clears all the monitor functions for a `DM` object. 8837c0f0dcc3SMatthew G. Knepley 883820f4b53cSBarry Smith Logically Collective 8839c0f0dcc3SMatthew G. Knepley 8840c0f0dcc3SMatthew G. Knepley Input Parameter: 8841c0f0dcc3SMatthew G. Knepley . dm - the DM 8842c0f0dcc3SMatthew G. Knepley 8843c0f0dcc3SMatthew G. Knepley Options Database Key: 8844c0f0dcc3SMatthew G. Knepley . -dm_monitor_cancel - cancels all monitors that have been hardwired 8845bb7acecfSBarry Smith into a code by calls to `DMonitorSet()`, but does not cancel those 8846c0f0dcc3SMatthew G. Knepley set via the options database 8847c0f0dcc3SMatthew G. Knepley 88489bdbcad8SBarry Smith Level: intermediate 88499bdbcad8SBarry Smith 8850bb7acecfSBarry Smith Note: 8851bb7acecfSBarry Smith There is no way to clear one specific monitor from a `DM` object. 8852c0f0dcc3SMatthew G. Knepley 88531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`, `DMMonitor()` 8854c0f0dcc3SMatthew G. Knepley @*/ 8855d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorCancel(DM dm) 8856d71ae5a4SJacob Faibussowitsch { 8857c0f0dcc3SMatthew G. Knepley PetscInt m; 8858c0f0dcc3SMatthew G. Knepley 8859c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8860c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8861c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 88629566063dSJacob Faibussowitsch if (dm->monitordestroy[m]) PetscCall((*dm->monitordestroy[m])(&dm->monitorcontext[m])); 8863c0f0dcc3SMatthew G. Knepley } 8864c0f0dcc3SMatthew G. Knepley dm->numbermonitors = 0; 88653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8866c0f0dcc3SMatthew G. Knepley } 8867c0f0dcc3SMatthew G. Knepley 8868c0f0dcc3SMatthew G. Knepley /*@C 8869c0f0dcc3SMatthew G. Knepley DMMonitorSetFromOptions - Sets a monitor function and viewer appropriate for the type indicated by the user 8870c0f0dcc3SMatthew G. Knepley 887120f4b53cSBarry Smith Collective 8872c0f0dcc3SMatthew G. Knepley 8873c0f0dcc3SMatthew G. Knepley Input Parameters: 8874bb7acecfSBarry Smith + dm - `DM` object you wish to monitor 8875c0f0dcc3SMatthew G. Knepley . name - the monitor type one is seeking 8876c0f0dcc3SMatthew G. Knepley . help - message indicating what monitoring is done 8877c0f0dcc3SMatthew G. Knepley . manual - manual page for the monitor 8878c0f0dcc3SMatthew G. Knepley . monitor - the monitor function 8879bb7acecfSBarry Smith - monitorsetup - a function that is called once ONLY if the user selected this monitor that may set additional features of the `DM` or `PetscViewer` objects 8880c0f0dcc3SMatthew G. Knepley 8881c0f0dcc3SMatthew G. Knepley Output Parameter: 8882c0f0dcc3SMatthew G. Knepley . flg - Flag set if the monitor was created 8883c0f0dcc3SMatthew G. Knepley 8884c0f0dcc3SMatthew G. Knepley Level: developer 8885c0f0dcc3SMatthew G. Knepley 88861cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscOptionsGetViewer()`, `PetscOptionsGetReal()`, `PetscOptionsHasName()`, `PetscOptionsGetString()`, 8887db781477SPatrick Sanan `PetscOptionsGetIntArray()`, `PetscOptionsGetRealArray()`, `PetscOptionsBool()` 888860225df5SJacob Faibussowitsch `PetscOptionsInt()`, `PetscOptionsString()`, `PetscOptionsReal()`, 8889db781477SPatrick Sanan `PetscOptionsName()`, `PetscOptionsBegin()`, `PetscOptionsEnd()`, `PetscOptionsHeadBegin()`, 8890c2e3fba1SPatrick Sanan `PetscOptionsStringArray()`, `PetscOptionsRealArray()`, `PetscOptionsScalar()`, 8891db781477SPatrick Sanan `PetscOptionsBoolGroupBegin()`, `PetscOptionsBoolGroup()`, `PetscOptionsBoolGroupEnd()`, 8892bb7acecfSBarry Smith `PetscOptionsFList()`, `PetscOptionsEList()`, `DMMonitor()`, `DMMonitorSet()` 8893c0f0dcc3SMatthew G. Knepley @*/ 8894d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSetFromOptions(DM dm, const char name[], const char help[], const char manual[], PetscErrorCode (*monitor)(DM, void *), PetscErrorCode (*monitorsetup)(DM, PetscViewerAndFormat *), PetscBool *flg) 8895d71ae5a4SJacob Faibussowitsch { 8896c0f0dcc3SMatthew G. Knepley PetscViewer viewer; 8897c0f0dcc3SMatthew G. Knepley PetscViewerFormat format; 8898c0f0dcc3SMatthew G. Knepley 8899c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8900c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 89019566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetViewer(PetscObjectComm((PetscObject)dm), ((PetscObject)dm)->options, ((PetscObject)dm)->prefix, name, &viewer, &format, flg)); 8902c0f0dcc3SMatthew G. Knepley if (*flg) { 8903c0f0dcc3SMatthew G. Knepley PetscViewerAndFormat *vf; 8904c0f0dcc3SMatthew G. Knepley 89059566063dSJacob Faibussowitsch PetscCall(PetscViewerAndFormatCreate(viewer, format, &vf)); 8906cd791dc2SBarry Smith PetscCall(PetscOptionsRestoreViewer(&viewer)); 89079566063dSJacob Faibussowitsch if (monitorsetup) PetscCall((*monitorsetup)(dm, vf)); 89089566063dSJacob Faibussowitsch PetscCall(DMMonitorSet(dm, (PetscErrorCode(*)(DM, void *))monitor, vf, (PetscErrorCode(*)(void **))PetscViewerAndFormatDestroy)); 8909c0f0dcc3SMatthew G. Knepley } 89103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8911c0f0dcc3SMatthew G. Knepley } 8912c0f0dcc3SMatthew G. Knepley 8913c0f0dcc3SMatthew G. Knepley /*@ 8914c0f0dcc3SMatthew G. Knepley DMMonitor - runs the user provided monitor routines, if they exist 8915c0f0dcc3SMatthew G. Knepley 891620f4b53cSBarry Smith Collective 8917c0f0dcc3SMatthew G. Knepley 89182fe279fdSBarry Smith Input Parameter: 8919bb7acecfSBarry Smith . dm - The `DM` 8920c0f0dcc3SMatthew G. Knepley 8921c0f0dcc3SMatthew G. Knepley Level: developer 8922c0f0dcc3SMatthew G. Knepley 8923a4e35b19SJacob Faibussowitsch Developer Notes: 8924a4e35b19SJacob Faibussowitsch Note should indicate when during the life of the `DM` the monitor is run. It appears to be 8925a4e35b19SJacob Faibussowitsch related to the discretization process seems rather specialized since some `DM` have no 8926a4e35b19SJacob Faibussowitsch concept of discretization. 8927bb7acecfSBarry Smith 89281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()` 8929c0f0dcc3SMatthew G. Knepley @*/ 8930d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitor(DM dm) 8931d71ae5a4SJacob Faibussowitsch { 8932c0f0dcc3SMatthew G. Knepley PetscInt m; 8933c0f0dcc3SMatthew G. Knepley 8934c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 89353ba16761SJacob Faibussowitsch if (!dm) PetscFunctionReturn(PETSC_SUCCESS); 8936c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 893748a46eb9SPierre Jolivet for (m = 0; m < dm->numbermonitors; ++m) PetscCall((*dm->monitor[m])(dm, dm->monitorcontext[m])); 89383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8939c0f0dcc3SMatthew G. Knepley } 89402e4af2aeSMatthew G. Knepley 89412e4af2aeSMatthew G. Knepley /*@ 8942bb7acecfSBarry Smith DMComputeError - Computes the error assuming the user has provided the exact solution functions 89432e4af2aeSMatthew G. Knepley 894420f4b53cSBarry Smith Collective 89452e4af2aeSMatthew G. Knepley 89462e4af2aeSMatthew G. Knepley Input Parameters: 8947bb7acecfSBarry Smith + dm - The `DM` 89486b867d5aSJose E. Roman - sol - The solution vector 89492e4af2aeSMatthew G. Knepley 89506b867d5aSJose E. Roman Input/Output Parameter: 895120f4b53cSBarry Smith . errors - An array of length Nf, the number of fields, or `NULL` for no output; on output 89526b867d5aSJose E. Roman contains the error in each field 89536b867d5aSJose E. Roman 89546b867d5aSJose E. Roman Output Parameter: 895520f4b53cSBarry Smith . errorVec - A vector to hold the cellwise error (may be `NULL`) 895620f4b53cSBarry Smith 895720f4b53cSBarry Smith Level: developer 89582e4af2aeSMatthew G. Knepley 8959bb7acecfSBarry Smith Note: 8960bb7acecfSBarry Smith The exact solutions come from the `PetscDS` object, and the time comes from `DMGetOutputSequenceNumber()`. 89612e4af2aeSMatthew G. Knepley 89621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMGetRegionNumDS()`, `PetscDSGetExactSolution()`, `DMGetOutputSequenceNumber()` 89632e4af2aeSMatthew G. Knepley @*/ 8964d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeError(DM dm, Vec sol, PetscReal errors[], Vec *errorVec) 8965d71ae5a4SJacob Faibussowitsch { 89662e4af2aeSMatthew G. Knepley PetscErrorCode (**exactSol)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *); 89672e4af2aeSMatthew G. Knepley void **ctxs; 89682e4af2aeSMatthew G. Knepley PetscReal time; 89692e4af2aeSMatthew G. Knepley PetscInt Nf, f, Nds, s; 89702e4af2aeSMatthew G. Knepley 89712e4af2aeSMatthew G. Knepley PetscFunctionBegin; 89729566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 89739566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &exactSol, Nf, &ctxs)); 89749566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 89752e4af2aeSMatthew G. Knepley for (s = 0; s < Nds; ++s) { 89762e4af2aeSMatthew G. Knepley PetscDS ds; 89772e4af2aeSMatthew G. Knepley DMLabel label; 89782e4af2aeSMatthew G. Knepley IS fieldIS; 89792e4af2aeSMatthew G. Knepley const PetscInt *fields; 89802e4af2aeSMatthew G. Knepley PetscInt dsNf; 89812e4af2aeSMatthew G. Knepley 898207218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 89839566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 89849566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISGetIndices(fieldIS, &fields)); 89852e4af2aeSMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 89862e4af2aeSMatthew G. Knepley const PetscInt field = fields[f]; 89879566063dSJacob Faibussowitsch PetscCall(PetscDSGetExactSolution(ds, field, &exactSol[field], &ctxs[field])); 89882e4af2aeSMatthew G. Knepley } 89899566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISRestoreIndices(fieldIS, &fields)); 89902e4af2aeSMatthew G. Knepley } 8991ad540459SPierre Jolivet for (f = 0; f < Nf; ++f) PetscCheck(exactSol[f], PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "DS must contain exact solution functions in order to calculate error, missing for field %" PetscInt_FMT, f); 89929566063dSJacob Faibussowitsch PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time)); 89939566063dSJacob Faibussowitsch if (errors) PetscCall(DMComputeL2FieldDiff(dm, time, exactSol, ctxs, sol, errors)); 89942e4af2aeSMatthew G. Knepley if (errorVec) { 89952e4af2aeSMatthew G. Knepley DM edm; 89962e4af2aeSMatthew G. Knepley DMPolytopeType ct; 89972e4af2aeSMatthew G. Knepley PetscBool simplex; 89982e4af2aeSMatthew G. Knepley PetscInt dim, cStart, Nf; 89992e4af2aeSMatthew G. Knepley 90009566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &edm)); 90019566063dSJacob Faibussowitsch PetscCall(DMGetDimension(edm, &dim)); 90029566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 90039566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 90042e4af2aeSMatthew G. Knepley simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE; 90059566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 90062e4af2aeSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 90072e4af2aeSMatthew G. Knepley PetscFE fe, efe; 90082e4af2aeSMatthew G. Knepley PetscQuadrature q; 90092e4af2aeSMatthew G. Knepley const char *name; 90102e4af2aeSMatthew G. Knepley 90119566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe)); 90129566063dSJacob Faibussowitsch PetscCall(PetscFECreateLagrange(PETSC_COMM_SELF, dim, Nf, simplex, 0, PETSC_DETERMINE, &efe)); 90139566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)fe, &name)); 90149566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)efe, name)); 90159566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 90169566063dSJacob Faibussowitsch PetscCall(PetscFESetQuadrature(efe, q)); 90179566063dSJacob Faibussowitsch PetscCall(DMSetField(edm, f, NULL, (PetscObject)efe)); 90189566063dSJacob Faibussowitsch PetscCall(PetscFEDestroy(&efe)); 90192e4af2aeSMatthew G. Knepley } 90209566063dSJacob Faibussowitsch PetscCall(DMCreateDS(edm)); 90212e4af2aeSMatthew G. Knepley 90229566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(edm, errorVec)); 90239566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*errorVec, "Error")); 90249566063dSJacob Faibussowitsch PetscCall(DMPlexComputeL2DiffVec(dm, time, exactSol, ctxs, sol, *errorVec)); 90259566063dSJacob Faibussowitsch PetscCall(DMDestroy(&edm)); 90262e4af2aeSMatthew G. Knepley } 90279566063dSJacob Faibussowitsch PetscCall(PetscFree2(exactSol, ctxs)); 90283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 90292e4af2aeSMatthew G. Knepley } 90309a2a23afSMatthew G. Knepley 90319a2a23afSMatthew G. Knepley /*@ 9032bb7acecfSBarry Smith DMGetNumAuxiliaryVec - Get the number of auxiliary vectors associated with this `DM` 90339a2a23afSMatthew G. Knepley 903420f4b53cSBarry Smith Not Collective 90359a2a23afSMatthew G. Knepley 90369a2a23afSMatthew G. Knepley Input Parameter: 9037bb7acecfSBarry Smith . dm - The `DM` 90389a2a23afSMatthew G. Knepley 90399a2a23afSMatthew G. Knepley Output Parameter: 9040a5b23f4aSJose E. Roman . numAux - The number of auxiliary data vectors 90419a2a23afSMatthew G. Knepley 90429a2a23afSMatthew G. Knepley Level: advanced 90439a2a23afSMatthew G. Knepley 9044e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMGetAuxiliaryVec()` 90459a2a23afSMatthew G. Knepley @*/ 9046d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumAuxiliaryVec(DM dm, PetscInt *numAux) 9047d71ae5a4SJacob Faibussowitsch { 90489a2a23afSMatthew G. Knepley PetscFunctionBegin; 90499a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 90509566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetSize(dm->auxData, numAux)); 90513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 90529a2a23afSMatthew G. Knepley } 90539a2a23afSMatthew G. Knepley 90549a2a23afSMatthew G. Knepley /*@ 9055ac17215fSMatthew G. Knepley DMGetAuxiliaryVec - Get the auxiliary vector for region specified by the given label and value, and equation part 90569a2a23afSMatthew G. Knepley 905720f4b53cSBarry Smith Not Collective 90589a2a23afSMatthew G. Knepley 90599a2a23afSMatthew G. Knepley Input Parameters: 9060bb7acecfSBarry Smith + dm - The `DM` 9061bb7acecfSBarry Smith . label - The `DMLabel` 9062ac17215fSMatthew G. Knepley . value - The label value indicating the region 9063ac17215fSMatthew G. Knepley - part - The equation part, or 0 if unused 90649a2a23afSMatthew G. Knepley 90659a2a23afSMatthew G. Knepley Output Parameter: 9066bb7acecfSBarry Smith . aux - The `Vec` holding auxiliary field data 90679a2a23afSMatthew G. Knepley 90689bdbcad8SBarry Smith Level: advanced 90699bdbcad8SBarry Smith 9070bb7acecfSBarry Smith Note: 9071bb7acecfSBarry Smith If no auxiliary vector is found for this (label, value), (NULL, 0, 0) is checked as well. 907204c51a94SMatthew G. Knepley 9073e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryLabels()` 90749a2a23afSMatthew G. Knepley @*/ 9075d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec *aux) 9076d71ae5a4SJacob Faibussowitsch { 9077ac17215fSMatthew G. Knepley PetscHashAuxKey key, wild = {NULL, 0, 0}; 907804c51a94SMatthew G. Knepley PetscBool has; 90799a2a23afSMatthew G. Knepley 90809a2a23afSMatthew G. Knepley PetscFunctionBegin; 90819a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 90829a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 90839a2a23afSMatthew G. Knepley key.label = label; 90849a2a23afSMatthew G. Knepley key.value = value; 9085ac17215fSMatthew G. Knepley key.part = part; 90869566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxHas(dm->auxData, key, &has)); 90879566063dSJacob Faibussowitsch if (has) PetscCall(PetscHMapAuxGet(dm->auxData, key, aux)); 90889566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxGet(dm->auxData, wild, aux)); 90893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 90909a2a23afSMatthew G. Knepley } 90919a2a23afSMatthew G. Knepley 90929a2a23afSMatthew G. Knepley /*@ 9093bb7acecfSBarry Smith DMSetAuxiliaryVec - Set an auxiliary vector for region specified by the given label and value, and equation part 90949a2a23afSMatthew G. Knepley 909520f4b53cSBarry Smith Not Collective because auxiliary vectors are not parallel 90969a2a23afSMatthew G. Knepley 90979a2a23afSMatthew G. Knepley Input Parameters: 9098bb7acecfSBarry Smith + dm - The `DM` 9099bb7acecfSBarry Smith . label - The `DMLabel` 91009a2a23afSMatthew G. Knepley . value - The label value indicating the region 9101ac17215fSMatthew G. Knepley . part - The equation part, or 0 if unused 9102bb7acecfSBarry Smith - aux - The `Vec` holding auxiliary field data 91039a2a23afSMatthew G. Knepley 91049a2a23afSMatthew G. Knepley Level: advanced 91059a2a23afSMatthew G. Knepley 9106e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMCopyAuxiliaryVec()` 91079a2a23afSMatthew G. Knepley @*/ 9108d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec aux) 9109d71ae5a4SJacob Faibussowitsch { 91109a2a23afSMatthew G. Knepley Vec old; 91119a2a23afSMatthew G. Knepley PetscHashAuxKey key; 91129a2a23afSMatthew G. Knepley 91139a2a23afSMatthew G. Knepley PetscFunctionBegin; 91149a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 91159a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 91169a2a23afSMatthew G. Knepley key.label = label; 91179a2a23afSMatthew G. Knepley key.value = value; 9118ac17215fSMatthew G. Knepley key.part = part; 91199566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGet(dm->auxData, key, &old)); 91209566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)aux)); 91219566063dSJacob Faibussowitsch if (!aux) PetscCall(PetscHMapAuxDel(dm->auxData, key)); 91229566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxSet(dm->auxData, key, aux)); 9123d705d0eaSStefano Zampini PetscCall(VecDestroy(&old)); 91243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91259a2a23afSMatthew G. Knepley } 91269a2a23afSMatthew G. Knepley 91279a2a23afSMatthew G. Knepley /*@C 9128bb7acecfSBarry Smith DMGetAuxiliaryLabels - Get the labels, values, and parts for all auxiliary vectors in this `DM` 91299a2a23afSMatthew G. Knepley 913020f4b53cSBarry Smith Not Collective 91319a2a23afSMatthew G. Knepley 91329a2a23afSMatthew G. Knepley Input Parameter: 9133bb7acecfSBarry Smith . dm - The `DM` 91349a2a23afSMatthew G. Knepley 91359a2a23afSMatthew G. Knepley Output Parameters: 9136bb7acecfSBarry Smith + labels - The `DMLabel`s for each `Vec` 9137bb7acecfSBarry Smith . values - The label values for each `Vec` 9138bb7acecfSBarry Smith - parts - The equation parts for each `Vec` 91399a2a23afSMatthew G. Knepley 91409bdbcad8SBarry Smith Level: advanced 91419bdbcad8SBarry Smith 9142bb7acecfSBarry Smith Note: 9143bb7acecfSBarry Smith The arrays passed in must be at least as large as `DMGetNumAuxiliaryVec()`. 91449a2a23afSMatthew G. Knepley 9145e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMCopyAuxiliaryVec()` 91469a2a23afSMatthew G. Knepley @*/ 9147d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryLabels(DM dm, DMLabel labels[], PetscInt values[], PetscInt parts[]) 9148d71ae5a4SJacob Faibussowitsch { 91499a2a23afSMatthew G. Knepley PetscHashAuxKey *keys; 91509a2a23afSMatthew G. Knepley PetscInt n, i, off = 0; 91519a2a23afSMatthew G. Knepley 91529a2a23afSMatthew G. Knepley PetscFunctionBegin; 91539a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 91544f572ea9SToby Isaac PetscAssertPointer(labels, 2); 91554f572ea9SToby Isaac PetscAssertPointer(values, 3); 91564f572ea9SToby Isaac PetscAssertPointer(parts, 4); 91579566063dSJacob Faibussowitsch PetscCall(DMGetNumAuxiliaryVec(dm, &n)); 91589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &keys)); 91599566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetKeys(dm->auxData, &off, keys)); 91609371c9d4SSatish Balay for (i = 0; i < n; ++i) { 91619371c9d4SSatish Balay labels[i] = keys[i].label; 91629371c9d4SSatish Balay values[i] = keys[i].value; 91639371c9d4SSatish Balay parts[i] = keys[i].part; 91649371c9d4SSatish Balay } 91659566063dSJacob Faibussowitsch PetscCall(PetscFree(keys)); 91663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91679a2a23afSMatthew G. Knepley } 91689a2a23afSMatthew G. Knepley 91699a2a23afSMatthew G. Knepley /*@ 9170bb7acecfSBarry Smith DMCopyAuxiliaryVec - Copy the auxiliary vector data on a `DM` to a new `DM` 91719a2a23afSMatthew G. Knepley 917220f4b53cSBarry Smith Not Collective 91739a2a23afSMatthew G. Knepley 91749a2a23afSMatthew G. Knepley Input Parameter: 9175bb7acecfSBarry Smith . dm - The `DM` 91769a2a23afSMatthew G. Knepley 91779a2a23afSMatthew G. Knepley Output Parameter: 9178bb7acecfSBarry Smith . dmNew - The new `DM`, now with the same auxiliary data 91799a2a23afSMatthew G. Knepley 91809a2a23afSMatthew G. Knepley Level: advanced 91819a2a23afSMatthew G. Knepley 9182bb7acecfSBarry Smith Note: 9183bb7acecfSBarry Smith This is a shallow copy of the auxiliary vectors 9184bb7acecfSBarry Smith 9185e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 91869a2a23afSMatthew G. Knepley @*/ 9187d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyAuxiliaryVec(DM dm, DM dmNew) 9188d71ae5a4SJacob Faibussowitsch { 91899a2a23afSMatthew G. Knepley PetscFunctionBegin; 91909a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9191d705d0eaSStefano Zampini PetscValidHeaderSpecific(dmNew, DM_CLASSID, 2); 9192d705d0eaSStefano Zampini if (dm == dmNew) PetscFunctionReturn(PETSC_SUCCESS); 9193e4d5475eSStefano Zampini PetscCall(DMClearAuxiliaryVec(dmNew)); 9194e4d5475eSStefano Zampini 9195e4d5475eSStefano Zampini PetscCall(PetscHMapAuxDestroy(&dmNew->auxData)); 91969566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDuplicate(dm->auxData, &dmNew->auxData)); 9197d705d0eaSStefano Zampini { 9198d705d0eaSStefano Zampini Vec *auxData; 9199d705d0eaSStefano Zampini PetscInt n, i, off = 0; 9200d705d0eaSStefano Zampini 9201d705d0eaSStefano Zampini PetscCall(PetscHMapAuxGetSize(dmNew->auxData, &n)); 9202d705d0eaSStefano Zampini PetscCall(PetscMalloc1(n, &auxData)); 9203d705d0eaSStefano Zampini PetscCall(PetscHMapAuxGetVals(dmNew->auxData, &off, auxData)); 9204d705d0eaSStefano Zampini for (i = 0; i < n; ++i) PetscCall(PetscObjectReference((PetscObject)auxData[i])); 9205d705d0eaSStefano Zampini PetscCall(PetscFree(auxData)); 9206e4d5475eSStefano Zampini } 9207e4d5475eSStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 9208e4d5475eSStefano Zampini } 9209e4d5475eSStefano Zampini 9210e4d5475eSStefano Zampini /*@ 9211e4d5475eSStefano Zampini DMClearAuxiliaryVec - Destroys the auxiliary vector information and creates a new empty one 9212e4d5475eSStefano Zampini 9213e4d5475eSStefano Zampini Not Collective 9214e4d5475eSStefano Zampini 9215e4d5475eSStefano Zampini Input Parameter: 9216e4d5475eSStefano Zampini . dm - The `DM` 9217e4d5475eSStefano Zampini 9218e4d5475eSStefano Zampini Level: advanced 9219e4d5475eSStefano Zampini 9220e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMCopyAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 9221e4d5475eSStefano Zampini @*/ 9222e4d5475eSStefano Zampini PetscErrorCode DMClearAuxiliaryVec(DM dm) 9223e4d5475eSStefano Zampini { 9224e4d5475eSStefano Zampini Vec *auxData; 9225e4d5475eSStefano Zampini PetscInt n, i, off = 0; 9226e4d5475eSStefano Zampini 9227e4d5475eSStefano Zampini PetscFunctionBegin; 9228e4d5475eSStefano Zampini PetscCall(PetscHMapAuxGetSize(dm->auxData, &n)); 9229d705d0eaSStefano Zampini PetscCall(PetscMalloc1(n, &auxData)); 9230e4d5475eSStefano Zampini PetscCall(PetscHMapAuxGetVals(dm->auxData, &off, auxData)); 9231d705d0eaSStefano Zampini for (i = 0; i < n; ++i) PetscCall(VecDestroy(&auxData[i])); 9232d705d0eaSStefano Zampini PetscCall(PetscFree(auxData)); 9233e4d5475eSStefano Zampini PetscCall(PetscHMapAuxDestroy(&dm->auxData)); 9234e4d5475eSStefano Zampini PetscCall(PetscHMapAuxCreate(&dm->auxData)); 92353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92369a2a23afSMatthew G. Knepley } 9237b5a892a1SMatthew G. Knepley 9238b5a892a1SMatthew G. Knepley /*@C 9239bb7acecfSBarry Smith DMPolytopeMatchOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9240b5a892a1SMatthew G. Knepley 924120f4b53cSBarry Smith Not Collective 9242b5a892a1SMatthew G. Knepley 9243b5a892a1SMatthew G. Knepley Input Parameters: 9244bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9245b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9246b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9247b5a892a1SMatthew G. Knepley 9248b5a892a1SMatthew G. Knepley Output Parameters: 9249bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9250b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9251b5a892a1SMatthew G. Knepley 9252b5a892a1SMatthew G. Knepley Level: advanced 9253b5a892a1SMatthew G. Knepley 9254bb7acecfSBarry Smith Note: 9255bb7acecfSBarry Smith An arrangement is a face order combined with an orientation for each face 9256bb7acecfSBarry Smith 925785036b15SMatthew G. Knepley Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2 9258bb7acecfSBarry Smith that labels each arrangement (face ordering plus orientation for each face). 9259bb7acecfSBarry Smith 9260bb7acecfSBarry Smith See `DMPolytopeMatchVertexOrientation()` to find a new vertex orientation that takes the source vertex arrangement to the target vertex arrangement 9261bb7acecfSBarry Smith 92621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetVertexOrientation()` 9263b5a892a1SMatthew G. Knepley @*/ 9264d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt, PetscBool *found) 9265d71ae5a4SJacob Faibussowitsch { 9266b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetConeSize(ct); 926785036b15SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2; 9268b5a892a1SMatthew G. Knepley PetscInt o, c; 9269b5a892a1SMatthew G. Knepley 9270b5a892a1SMatthew G. Knepley PetscFunctionBegin; 92719371c9d4SSatish Balay if (!nO) { 92729371c9d4SSatish Balay *ornt = 0; 92739371c9d4SSatish Balay *found = PETSC_TRUE; 92743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92759371c9d4SSatish Balay } 9276b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 927785036b15SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangement(ct, o); 9278b5a892a1SMatthew G. Knepley 92799371c9d4SSatish Balay for (c = 0; c < cS; ++c) 92809371c9d4SSatish Balay if (sourceCone[arr[c * 2]] != targetCone[c]) break; 92819371c9d4SSatish Balay if (c == cS) { 92829371c9d4SSatish Balay *ornt = o; 92839371c9d4SSatish Balay break; 92849371c9d4SSatish Balay } 9285b5a892a1SMatthew G. Knepley } 9286b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 92873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9288b5a892a1SMatthew G. Knepley } 9289b5a892a1SMatthew G. Knepley 9290b5a892a1SMatthew G. Knepley /*@C 9291bb7acecfSBarry Smith DMPolytopeGetOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9292b5a892a1SMatthew G. Knepley 929320f4b53cSBarry Smith Not Collective 9294b5a892a1SMatthew G. Knepley 9295b5a892a1SMatthew G. Knepley Input Parameters: 9296bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9297b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9298b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9299b5a892a1SMatthew G. Knepley 93002fe279fdSBarry Smith Output Parameter: 9301bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9302b5a892a1SMatthew G. Knepley 9303b5a892a1SMatthew G. Knepley Level: advanced 9304b5a892a1SMatthew G. Knepley 9305bb7acecfSBarry Smith Note: 9306bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchOrientation()` except it will generate an error if no suitable orientation can be found. 9307bb7acecfSBarry Smith 930860225df5SJacob Faibussowitsch Developer Notes: 9309bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchOrientation()` and error if none is found 9310bb7acecfSBarry Smith 93111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchOrientation()`, `DMPolytopeGetVertexOrientation()`, `DMPolytopeMatchVertexOrientation()` 9312b5a892a1SMatthew G. Knepley @*/ 9313d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9314d71ae5a4SJacob Faibussowitsch { 9315b5a892a1SMatthew G. Knepley PetscBool found; 9316b5a892a1SMatthew G. Knepley 9317b5a892a1SMatthew G. Knepley PetscFunctionBegin; 93189566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchOrientation(ct, sourceCone, targetCone, ornt, &found)); 93197a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 93203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9321b5a892a1SMatthew G. Knepley } 9322b5a892a1SMatthew G. Knepley 9323b5a892a1SMatthew G. Knepley /*@C 9324bb7acecfSBarry Smith DMPolytopeMatchVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9325b5a892a1SMatthew G. Knepley 932620f4b53cSBarry Smith Not Collective 9327b5a892a1SMatthew G. Knepley 9328b5a892a1SMatthew G. Knepley Input Parameters: 9329bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9330b5a892a1SMatthew G. Knepley . sourceVert - The source arrangement of vertices 9331b5a892a1SMatthew G. Knepley - targetVert - The target arrangement of vertices 9332b5a892a1SMatthew G. Knepley 9333b5a892a1SMatthew G. Knepley Output Parameters: 9334bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9335b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9336b5a892a1SMatthew G. Knepley 9337b5a892a1SMatthew G. Knepley Level: advanced 9338b5a892a1SMatthew G. Knepley 9339bb7acecfSBarry Smith Note: 9340bb7acecfSBarry Smith An arrangement is a vertex order 9341bb7acecfSBarry Smith 934285036b15SMatthew G. Knepley Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2 9343bb7acecfSBarry Smith that labels each arrangement (vertex ordering). 9344bb7acecfSBarry Smith 9345bb7acecfSBarry Smith See `DMPolytopeMatchOrientation()` to find a new face orientation that takes the source face arrangement to the target face arrangement 9346bb7acecfSBarry Smith 934785036b15SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchOrientation()`, `DMPolytopeTypeGetNumVertices()`, `DMPolytopeTypeGetVertexArrangement()` 9348b5a892a1SMatthew G. Knepley @*/ 9349d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchVertexOrientation(DMPolytopeType ct, const PetscInt sourceVert[], const PetscInt targetVert[], PetscInt *ornt, PetscBool *found) 9350d71ae5a4SJacob Faibussowitsch { 9351b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetNumVertices(ct); 935285036b15SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2; 9353b5a892a1SMatthew G. Knepley PetscInt o, c; 9354b5a892a1SMatthew G. Knepley 9355b5a892a1SMatthew G. Knepley PetscFunctionBegin; 93569371c9d4SSatish Balay if (!nO) { 93579371c9d4SSatish Balay *ornt = 0; 93589371c9d4SSatish Balay *found = PETSC_TRUE; 93593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 93609371c9d4SSatish Balay } 9361b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 936285036b15SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetVertexArrangement(ct, o); 9363b5a892a1SMatthew G. Knepley 93649371c9d4SSatish Balay for (c = 0; c < cS; ++c) 93659371c9d4SSatish Balay if (sourceVert[arr[c]] != targetVert[c]) break; 93669371c9d4SSatish Balay if (c == cS) { 93679371c9d4SSatish Balay *ornt = o; 93689371c9d4SSatish Balay break; 93699371c9d4SSatish Balay } 9370b5a892a1SMatthew G. Knepley } 9371b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 93723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9373b5a892a1SMatthew G. Knepley } 9374b5a892a1SMatthew G. Knepley 9375b5a892a1SMatthew G. Knepley /*@C 9376bb7acecfSBarry Smith DMPolytopeGetVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9377b5a892a1SMatthew G. Knepley 937820f4b53cSBarry Smith Not Collective 9379b5a892a1SMatthew G. Knepley 9380b5a892a1SMatthew G. Knepley Input Parameters: 9381bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9382b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of vertices 9383b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of vertices 9384b5a892a1SMatthew G. Knepley 93852fe279fdSBarry Smith Output Parameter: 9386bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9387b5a892a1SMatthew G. Knepley 9388b5a892a1SMatthew G. Knepley Level: advanced 9389b5a892a1SMatthew G. Knepley 9390bb7acecfSBarry Smith Note: 9391bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchVertexOrientation()` except it errors if not orientation is possible. 9392bb7acecfSBarry Smith 939360225df5SJacob Faibussowitsch Developer Notes: 9394bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchVertexOrientation()` and error if none is found 9395bb7acecfSBarry Smith 93961cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetOrientation()` 9397b5a892a1SMatthew G. Knepley @*/ 9398d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetVertexOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9399d71ae5a4SJacob Faibussowitsch { 9400b5a892a1SMatthew G. Knepley PetscBool found; 9401b5a892a1SMatthew G. Knepley 9402b5a892a1SMatthew G. Knepley PetscFunctionBegin; 94039566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchVertexOrientation(ct, sourceCone, targetCone, ornt, &found)); 94047a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 94053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9406b5a892a1SMatthew G. Knepley } 9407012bc364SMatthew G. Knepley 9408012bc364SMatthew G. Knepley /*@C 9409012bc364SMatthew G. Knepley DMPolytopeInCellTest - Check whether a point lies inside the reference cell of given type 9410012bc364SMatthew G. Knepley 941120f4b53cSBarry Smith Not Collective 9412012bc364SMatthew G. Knepley 9413012bc364SMatthew G. Knepley Input Parameters: 9414bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9415012bc364SMatthew G. Knepley - point - Coordinates of the point 9416012bc364SMatthew G. Knepley 94172fe279fdSBarry Smith Output Parameter: 9418012bc364SMatthew G. Knepley . inside - Flag indicating whether the point is inside the reference cell of given type 9419012bc364SMatthew G. Knepley 9420012bc364SMatthew G. Knepley Level: advanced 9421012bc364SMatthew G. Knepley 94221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMLocatePoints()` 9423012bc364SMatthew G. Knepley @*/ 9424d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeInCellTest(DMPolytopeType ct, const PetscReal point[], PetscBool *inside) 9425d71ae5a4SJacob Faibussowitsch { 9426012bc364SMatthew G. Knepley PetscReal sum = 0.0; 9427012bc364SMatthew G. Knepley PetscInt d; 9428012bc364SMatthew G. Knepley 9429012bc364SMatthew G. Knepley PetscFunctionBegin; 9430012bc364SMatthew G. Knepley *inside = PETSC_TRUE; 9431012bc364SMatthew G. Knepley switch (ct) { 9432012bc364SMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 9433012bc364SMatthew G. Knepley case DM_POLYTOPE_TETRAHEDRON: 9434012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) { 94359371c9d4SSatish Balay if (point[d] < -1.0) { 94369371c9d4SSatish Balay *inside = PETSC_FALSE; 94379371c9d4SSatish Balay break; 94389371c9d4SSatish Balay } 9439012bc364SMatthew G. Knepley sum += point[d]; 9440012bc364SMatthew G. Knepley } 94419371c9d4SSatish Balay if (sum > PETSC_SMALL) { 94429371c9d4SSatish Balay *inside = PETSC_FALSE; 94439371c9d4SSatish Balay break; 94449371c9d4SSatish Balay } 9445012bc364SMatthew G. Knepley break; 9446012bc364SMatthew G. Knepley case DM_POLYTOPE_QUADRILATERAL: 9447012bc364SMatthew G. Knepley case DM_POLYTOPE_HEXAHEDRON: 9448012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) 94499371c9d4SSatish Balay if (PetscAbsReal(point[d]) > 1. + PETSC_SMALL) { 94509371c9d4SSatish Balay *inside = PETSC_FALSE; 9451012bc364SMatthew G. Knepley break; 94529371c9d4SSatish Balay } 94539371c9d4SSatish Balay break; 9454d71ae5a4SJacob Faibussowitsch default: 9455d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported polytope type %s", DMPolytopeTypes[ct]); 9456012bc364SMatthew G. Knepley } 94573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9458012bc364SMatthew G. Knepley } 9459adc21957SMatthew G. Knepley 9460adc21957SMatthew G. Knepley /*@ 9461adc21957SMatthew G. Knepley DMReorderSectionSetDefault - Set flag indicating whether the local section should be reordered by default 9462adc21957SMatthew G. Knepley 9463adc21957SMatthew G. Knepley Logically collective 9464adc21957SMatthew G. Knepley 9465adc21957SMatthew G. Knepley Input Parameters: 9466adc21957SMatthew G. Knepley + dm - The DM 9467adc21957SMatthew G. Knepley - reorder - Flag for reordering 9468adc21957SMatthew G. Knepley 9469adc21957SMatthew G. Knepley Level: intermediate 9470adc21957SMatthew G. Knepley 9471adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetDefault()` 9472adc21957SMatthew G. Knepley @*/ 9473adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetDefault(DM dm, DMReorderDefaultFlag reorder) 9474adc21957SMatthew G. Knepley { 9475adc21957SMatthew G. Knepley PetscFunctionBegin; 9476adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9477adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionSetDefault_C", (DM, DMReorderDefaultFlag), (dm, reorder)); 9478adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9479adc21957SMatthew G. Knepley } 9480adc21957SMatthew G. Knepley 9481adc21957SMatthew G. Knepley /*@ 9482adc21957SMatthew G. Knepley DMReorderSectionGetDefault - Get flag indicating whether the local section should be reordered by default 9483adc21957SMatthew G. Knepley 9484adc21957SMatthew G. Knepley Not collective 9485adc21957SMatthew G. Knepley 9486adc21957SMatthew G. Knepley Input Parameter: 9487adc21957SMatthew G. Knepley . dm - The DM 9488adc21957SMatthew G. Knepley 9489adc21957SMatthew G. Knepley Output Parameter: 9490adc21957SMatthew G. Knepley . reorder - Flag for reordering 9491adc21957SMatthew G. Knepley 9492adc21957SMatthew G. Knepley Level: intermediate 9493adc21957SMatthew G. Knepley 9494adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()` 9495adc21957SMatthew G. Knepley @*/ 9496adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetDefault(DM dm, DMReorderDefaultFlag *reorder) 9497adc21957SMatthew G. Knepley { 9498adc21957SMatthew G. Knepley PetscFunctionBegin; 9499adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9500adc21957SMatthew G. Knepley PetscAssertPointer(reorder, 2); 9501adc21957SMatthew G. Knepley *reorder = DM_REORDER_DEFAULT_NOTSET; 9502adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionGetDefault_C", (DM, DMReorderDefaultFlag *), (dm, reorder)); 9503adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9504adc21957SMatthew G. Knepley } 9505adc21957SMatthew G. Knepley 9506adc21957SMatthew G. Knepley /*@C 9507adc21957SMatthew G. Knepley DMReorderSectionSetType - Set the type of local section reordering 9508adc21957SMatthew G. Knepley 9509adc21957SMatthew G. Knepley Logically collective 9510adc21957SMatthew G. Knepley 9511adc21957SMatthew G. Knepley Input Parameters: 9512adc21957SMatthew G. Knepley + dm - The DM 9513adc21957SMatthew G. Knepley - reorder - The reordering method 9514adc21957SMatthew G. Knepley 9515adc21957SMatthew G. Knepley Level: intermediate 9516adc21957SMatthew G. Knepley 9517adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetType()`, `DMReorderSectionSetDefault()` 9518adc21957SMatthew G. Knepley @*/ 9519adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetType(DM dm, MatOrderingType reorder) 9520adc21957SMatthew G. Knepley { 9521adc21957SMatthew G. Knepley PetscFunctionBegin; 9522adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9523adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionSetType_C", (DM, MatOrderingType), (dm, reorder)); 9524adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9525adc21957SMatthew G. Knepley } 9526adc21957SMatthew G. Knepley 9527adc21957SMatthew G. Knepley /*@C 9528adc21957SMatthew G. Knepley DMReorderSectionGetType - Get the reordering type for the local section 9529adc21957SMatthew G. Knepley 9530adc21957SMatthew G. Knepley Not collective 9531adc21957SMatthew G. Knepley 9532adc21957SMatthew G. Knepley Input Parameter: 9533adc21957SMatthew G. Knepley . dm - The DM 9534adc21957SMatthew G. Knepley 9535adc21957SMatthew G. Knepley Output Parameter: 9536adc21957SMatthew G. Knepley . reorder - The reordering method 9537adc21957SMatthew G. Knepley 9538adc21957SMatthew G. Knepley Level: intermediate 9539adc21957SMatthew G. Knepley 9540adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()`, `DMReorderSectionGetDefault()` 9541adc21957SMatthew G. Knepley @*/ 9542adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetType(DM dm, MatOrderingType *reorder) 9543adc21957SMatthew G. Knepley { 9544adc21957SMatthew G. Knepley PetscFunctionBegin; 9545adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9546adc21957SMatthew G. Knepley PetscAssertPointer(reorder, 2); 9547adc21957SMatthew G. Knepley *reorder = NULL; 9548adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionGetType_C", (DM, MatOrderingType *), (dm, reorder)); 9549adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9550adc21957SMatthew G. Knepley } 9551