xref: /petsc/src/ksp/pc/impls/bddc/bddc.c (revision 86bfa4cf50127da68b7605a610a68638b1b39343)
153cdbc3dSStefano Zampini /* TODOLIST
2eb97c9d2SStefano Zampini 
3eb97c9d2SStefano Zampini    Solvers
4a0d3c3abSStefano Zampini    - Add support for cholesky for coarse solver (similar to local solvers)
5eb97c9d2SStefano Zampini    - Propagate ksp prefixes for solvers to mat objects?
6eb97c9d2SStefano Zampini 
7eb97c9d2SStefano Zampini    User interface
80f202f7eSStefano Zampini    - ** DM attached to pc?
9eb97c9d2SStefano Zampini 
10eb97c9d2SStefano Zampini    Debugging output
11b9b85e73SStefano Zampini    - * Better management of verbosity levels of debugging output
12eb97c9d2SStefano Zampini 
13eb97c9d2SStefano Zampini    Extra
14b9b85e73SStefano Zampini    - *** Is it possible to work with PCBDDCGraph on boundary indices only (less memory consumed)?
15eb97c9d2SStefano Zampini    - BDDC with MG framework?
16eb97c9d2SStefano Zampini 
17eb97c9d2SStefano Zampini    MATIS related operations contained in BDDC code
18eb97c9d2SStefano Zampini    - Provide general case for subassembling
19eb97c9d2SStefano Zampini 
2053cdbc3dSStefano Zampini */
210c7d97c5SJed Brown 
22ab5c6b0cSJed Brown #include <../src/ksp/pc/impls/bddc/bddc.h> /*I "petscpc.h" I*/  /* includes for fortran wrappers */
23ab5c6b0cSJed Brown #include <../src/ksp/pc/impls/bddc/bddcprivate.h>
243b03a366Sstefano_zampini #include <petscblaslapack.h>
25674ae819SStefano Zampini 
26f3d41395Sstefano_zampini static PetscBool  cited = PETSC_FALSE;
27f3d41395Sstefano_zampini static const char citation[] =
28f3d41395Sstefano_zampini "@article{ZampiniPCBDDC,\n"
29f3d41395Sstefano_zampini "author = {Stefano Zampini},\n"
30f3d41395Sstefano_zampini "title = {{PCBDDC}: A Class of Robust Dual-Primal Methods in {PETS}c},\n"
31f3d41395Sstefano_zampini "journal = {SIAM Journal on Scientific Computing},\n"
32f3d41395Sstefano_zampini "volume = {38},\n"
33f3d41395Sstefano_zampini "number = {5},\n"
34f3d41395Sstefano_zampini "pages = {S282-S306},\n"
35f3d41395Sstefano_zampini "year = {2016},\n"
36f3d41395Sstefano_zampini "doi = {10.1137/15M1025785},\n"
37f3d41395Sstefano_zampini "URL = {http://dx.doi.org/10.1137/15M1025785},\n"
38f3d41395Sstefano_zampini "eprint = {http://dx.doi.org/10.1137/15M1025785}\n"
39f3d41395Sstefano_zampini "}\n";
40f3d41395Sstefano_zampini 
410369aaf7SStefano Zampini /* temporarily declare it */
420369aaf7SStefano Zampini PetscErrorCode PCApply_BDDC(PC,Vec,Vec);
430369aaf7SStefano Zampini 
444416b707SBarry Smith PetscErrorCode PCSetFromOptions_BDDC(PetscOptionItems *PetscOptionsObject,PC pc)
450c7d97c5SJed Brown {
460c7d97c5SJed Brown   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
47bd2a564bSStefano Zampini   PetscInt       nt;
480c7d97c5SJed Brown   PetscErrorCode ierr;
490c7d97c5SJed Brown 
500c7d97c5SJed Brown   PetscFunctionBegin;
51e55864a3SBarry Smith   ierr = PetscOptionsHead(PetscOptionsObject,"BDDC options");CHKERRQ(ierr);
528eeda7d8SStefano Zampini   /* Verbose debugging */
53a13144ffSStefano Zampini   ierr = PetscOptionsInt("-pc_bddc_check_level","Verbose output for PCBDDC (intended for debug)","none",pcbddc->dbg_flag,&pcbddc->dbg_flag,NULL);CHKERRQ(ierr);
54a13144ffSStefano Zampini   /* Approximate solvers */
55c7017625SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_dirichlet_approximate","Inform PCBDDC that we are using approximate Dirichlet solvers","none",pcbddc->NullSpace_corr[0],&pcbddc->NullSpace_corr[0],NULL);CHKERRQ(ierr);
56c7017625SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_dirichlet_approximate_scale","Inform PCBDDC that we need to scale the Dirichlet solve","none",pcbddc->NullSpace_corr[1],&pcbddc->NullSpace_corr[1],NULL);CHKERRQ(ierr);
57c7017625SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_neumann_approximate","Inform PCBDDC that we are using approximate Neumann solvers","none",pcbddc->NullSpace_corr[2],&pcbddc->NullSpace_corr[2],NULL);CHKERRQ(ierr);
58c7017625SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_neumann_approximate_scale","Inform PCBDDC that we need to scale the Neumann solve","none",pcbddc->NullSpace_corr[3],&pcbddc->NullSpace_corr[3],NULL);CHKERRQ(ierr);
596b78500eSPatrick Sanan   /* Primal space customization */
6008a5cf49SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_use_local_mat_graph","Use or not adjacency graph of local mat for interface analysis","none",pcbddc->use_local_adj,&pcbddc->use_local_adj,NULL);CHKERRQ(ierr);
61be12c134Sstefano_zampini   ierr = PetscOptionsInt("-pc_bddc_graph_maxcount","Maximum number of shared subdomains for a connected component","none",pcbddc->graphmaxcount,&pcbddc->graphmaxcount,NULL);CHKERRQ(ierr);
621c7a958bSStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_corner_selection","Activates face-based corner selection","none",pcbddc->corner_selection,&pcbddc->corner_selection,NULL);CHKERRQ(ierr);
638eeda7d8SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_use_vertices","Use or not corner dofs in coarse space","none",pcbddc->use_vertices,&pcbddc->use_vertices,NULL);CHKERRQ(ierr);
648eeda7d8SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_use_edges","Use or not edge constraints in coarse space","none",pcbddc->use_edges,&pcbddc->use_edges,NULL);CHKERRQ(ierr);
658eeda7d8SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_use_faces","Use or not face constraints in coarse space","none",pcbddc->use_faces,&pcbddc->use_faces,NULL);CHKERRQ(ierr);
6614f95afaSStefano Zampini   ierr = PetscOptionsInt("-pc_bddc_vertex_size","Connected components smaller or equal to vertex size will be considered as primal vertices","none",pcbddc->vertex_size,&pcbddc->vertex_size,NULL);CHKERRQ(ierr);
676661aa1dSStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_use_true_nnsp","Use near null space attached to the matrix without modifications","none",pcbddc->use_nnsp_true,&pcbddc->use_nnsp_true,NULL);CHKERRQ(ierr);
6814f95afaSStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_use_qr_single","Use QR factorization for single constraints on cc (QR is always used when multiple constraints are present)","none",pcbddc->use_qr_single,&pcbddc->use_qr_single,NULL);CHKERRQ(ierr);
698eeda7d8SStefano Zampini   /* Change of basis */
70b9b85e73SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_use_change_of_basis","Use or not internal change of basis on local edge nodes","none",pcbddc->use_change_of_basis,&pcbddc->use_change_of_basis,NULL);CHKERRQ(ierr);
71b9b85e73SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_use_change_on_faces","Use or not internal change of basis on local face nodes","none",pcbddc->use_change_on_faces,&pcbddc->use_change_on_faces,NULL);CHKERRQ(ierr);
72674ae819SStefano Zampini   if (!pcbddc->use_change_of_basis) {
73674ae819SStefano Zampini     pcbddc->use_change_on_faces = PETSC_FALSE;
74674ae819SStefano Zampini   }
758eeda7d8SStefano Zampini   /* Switch between M_2 (default) and M_3 preconditioners (as defined by C. Dohrmann in the ref. article) */
768eeda7d8SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_switch_static","Switch on static condensation ops around the interface preconditioner","none",pcbddc->switch_static,&pcbddc->switch_static,NULL);CHKERRQ(ierr);
7757de7509SStefano Zampini   ierr = PetscOptionsInt("-pc_bddc_coarse_eqs_per_proc","Number of equations per process for coarse problem redistribution (significant only at the coarsest level)","none",pcbddc->coarse_eqs_per_proc,&pcbddc->coarse_eqs_per_proc,NULL);CHKERRQ(ierr);
780298fd71SBarry Smith   ierr = PetscOptionsInt("-pc_bddc_coarsening_ratio","Set coarsening ratio used in multilevel coarsening","none",pcbddc->coarsening_ratio,&pcbddc->coarsening_ratio,NULL);CHKERRQ(ierr);
792b510759SStefano Zampini   ierr = PetscOptionsInt("-pc_bddc_levels","Set maximum number of levels for multilevel","none",pcbddc->max_levels,&pcbddc->max_levels,NULL);CHKERRQ(ierr);
80323d395dSStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_use_coarse_estimates","Use estimated eigenvalues for coarse problem","none",pcbddc->use_coarse_estimates,&pcbddc->use_coarse_estimates,NULL);CHKERRQ(ierr);
81674ae819SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_use_deluxe_scaling","Use deluxe scaling for BDDC","none",pcbddc->use_deluxe_scaling,&pcbddc->use_deluxe_scaling,NULL);CHKERRQ(ierr);
82b96c3477SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_schur_rebuild","Whether or not the interface graph for Schur principal minors has to be rebuilt (i.e. define the interface without any adjacency)","none",pcbddc->sub_schurs_rebuild,&pcbddc->sub_schurs_rebuild,NULL);CHKERRQ(ierr);
83b96c3477SStefano Zampini   ierr = PetscOptionsInt("-pc_bddc_schur_layers","Number of dofs' layers for the computation of principal minors (i.e. -1 uses all dofs)","none",pcbddc->sub_schurs_layers,&pcbddc->sub_schurs_layers,NULL);CHKERRQ(ierr);
84b96c3477SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_schur_use_useradj","Whether or not the CSR graph specified by the user should be used for computing successive layers (default is to use adj of local mat)","none",pcbddc->sub_schurs_use_useradj,&pcbddc->sub_schurs_use_useradj,NULL);CHKERRQ(ierr);
85683d3df6SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_schur_exact","Whether or not to use the exact Schur complement instead of the reduced one (which excludes size 1 cc)","none",pcbddc->sub_schurs_exact_schur,&pcbddc->sub_schurs_exact_schur,NULL);CHKERRQ(ierr);
86bf3a8328SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_deluxe_zerorows","Zero rows and columns of deluxe operators associated with primal dofs","none",pcbddc->deluxe_zerorows,&pcbddc->deluxe_zerorows,NULL);CHKERRQ(ierr);
87839e9adbSstefano_zampini   ierr = PetscOptionsBool("-pc_bddc_deluxe_singlemat","Collapse deluxe operators","none",pcbddc->deluxe_singlemat,&pcbddc->deluxe_singlemat,NULL);CHKERRQ(ierr);
88bf3a8328SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_adaptive_userdefined","Use user-defined constraints (should be attached via MatSetNearNullSpace to pmat) in addition to those adaptively generated","none",pcbddc->adaptive_userdefined,&pcbddc->adaptive_userdefined,NULL);CHKERRQ(ierr);
89bd2a564bSStefano Zampini   nt   = 2;
90bd2a564bSStefano Zampini   ierr = PetscOptionsRealArray("-pc_bddc_adaptive_threshold","Thresholds to be used for adaptive selection of constraints","none",pcbddc->adaptive_threshold,&nt,NULL);CHKERRQ(ierr);
91bd2a564bSStefano Zampini   if (nt == 1) pcbddc->adaptive_threshold[1] = pcbddc->adaptive_threshold[0];
9208122e43SStefano Zampini   ierr = PetscOptionsInt("-pc_bddc_adaptive_nmin","Minimum number of constraints per connected components","none",pcbddc->adaptive_nmin,&pcbddc->adaptive_nmin,NULL);CHKERRQ(ierr);
9308122e43SStefano Zampini   ierr = PetscOptionsInt("-pc_bddc_adaptive_nmax","Maximum number of constraints per connected components","none",pcbddc->adaptive_nmax,&pcbddc->adaptive_nmax,NULL);CHKERRQ(ierr);
943301b35fSStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_symmetric","Symmetric computation of primal basis functions","none",pcbddc->symmetric_primal,&pcbddc->symmetric_primal,NULL);CHKERRQ(ierr);
95b0c7d250SStefano Zampini   ierr = PetscOptionsInt("-pc_bddc_coarse_adj","Number of processors where to map the coarse adjacency list","none",pcbddc->coarse_adj_red,&pcbddc->coarse_adj_red,NULL);CHKERRQ(ierr);
96b3afcdbeSStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_benign_trick","Apply the benign subspace trick to saddle point problems with discontinuous pressures","none",pcbddc->benign_saddle_point,&pcbddc->benign_saddle_point,NULL);CHKERRQ(ierr);
97e9627c49SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_benign_change","Compute the pressure change of basis explicitly","none",pcbddc->benign_change_explicit,&pcbddc->benign_change_explicit,NULL);CHKERRQ(ierr);
9827b6a85dSStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_benign_compute_correction","Compute the benign correction during PreSolve","none",pcbddc->benign_compute_correction,&pcbddc->benign_compute_correction,NULL);CHKERRQ(ierr);
99a198735bSStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_nonetflux","Automatic computation of no-net-flux quadrature weights","none",pcbddc->compute_nonetflux,&pcbddc->compute_nonetflux,NULL);CHKERRQ(ierr);
1004f1b2e48SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_detect_disconnected","Detects disconnected subdomains","none",pcbddc->detect_disconnected,&pcbddc->detect_disconnected,NULL);CHKERRQ(ierr);
10170c64980SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_eliminate_dirichlet","Whether or not we want to eliminate dirichlet dofs during presolve","none",pcbddc->eliminate_dirdofs,&pcbddc->eliminate_dirdofs,NULL);CHKERRQ(ierr);
1020c7d97c5SJed Brown   ierr = PetscOptionsTail();CHKERRQ(ierr);
1030c7d97c5SJed Brown   PetscFunctionReturn(0);
1040c7d97c5SJed Brown }
1056b78500eSPatrick Sanan 
1066b78500eSPatrick Sanan static PetscErrorCode PCView_BDDC(PC pc,PetscViewer viewer)
1076b78500eSPatrick Sanan {
1086b78500eSPatrick Sanan   PC_BDDC              *pcbddc = (PC_BDDC*)pc->data;
109e9627c49SStefano Zampini   PC_IS                *pcis = (PC_IS*)pc->data;
1106b78500eSPatrick Sanan   PetscErrorCode       ierr;
11171783a16SStefano Zampini   PetscBool            isascii;
112e9627c49SStefano Zampini   PetscSubcomm         subcomm;
113e9627c49SStefano Zampini   PetscViewer          subviewer;
1146b78500eSPatrick Sanan 
1156b78500eSPatrick Sanan   PetscFunctionBegin;
1166b78500eSPatrick Sanan   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&isascii);CHKERRQ(ierr);
1176b78500eSPatrick Sanan   /* ASCII viewer */
1186b78500eSPatrick Sanan   if (isascii) {
1194b2aedd3SStefano Zampini     PetscMPIInt   color,rank,size;
120fbad9177SStefano Zampini     PetscInt64    loc[7],gsum[6],gmax[6],gmin[6],totbenign;
121e9627c49SStefano Zampini     PetscScalar   interface_size;
122e9627c49SStefano Zampini     PetscReal     ratio1=0.,ratio2=0.;
123e9627c49SStefano Zampini     Vec           counter;
1246b78500eSPatrick Sanan 
125b74ba07aSstefano_zampini     if (!pc->setupcalled) {
126b74ba07aSstefano_zampini       ierr = PetscViewerASCIIPrintf(viewer,"  Partial information available: preconditioner has not been setup yet\n");CHKERRQ(ierr);
127b74ba07aSstefano_zampini     }
128efd4aadfSBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  Use verbose output: %D\n",pcbddc->dbg_flag);CHKERRQ(ierr);
1296f0c0a6aSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  Use user-defined CSR: %d\n",!!pcbddc->mat_graph->nvtxs_csr);CHKERRQ(ierr);
1306f0c0a6aSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  Use local mat graph: %d\n",pcbddc->use_local_adj && !pcbddc->mat_graph->nvtxs_csr);CHKERRQ(ierr);
131e9627c49SStefano Zampini     if (pcbddc->mat_graph->twodim) {
132efd4aadfSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  Connectivity graph topological dimension: 2\n");CHKERRQ(ierr);
133e9627c49SStefano Zampini     } else {
134efd4aadfSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  Connectivity graph topological dimension: 3\n");CHKERRQ(ierr);
135e9627c49SStefano Zampini     }
136aefa1729SStefano Zampini     if (pcbddc->graphmaxcount != PETSC_MAX_INT) {
137efd4aadfSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  Graph max count: %D\n",pcbddc->graphmaxcount);CHKERRQ(ierr);
138aefa1729SStefano Zampini     }
13950e0721cSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  Use vertices: %d (vertex size %D)\n",pcbddc->use_vertices,pcbddc->vertex_size);CHKERRQ(ierr);
140efd4aadfSBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  Use edges: %d\n",pcbddc->use_edges);CHKERRQ(ierr);
141efd4aadfSBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  Use faces: %d\n",pcbddc->use_faces);CHKERRQ(ierr);
142efd4aadfSBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  Use true near null space: %d\n",pcbddc->use_nnsp_true);CHKERRQ(ierr);
143efd4aadfSBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  Use QR for single constraints on cc: %d\n",pcbddc->use_qr_single);CHKERRQ(ierr);
144efd4aadfSBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  Use change of basis on local edge nodes: %d\n",pcbddc->use_change_of_basis);CHKERRQ(ierr);
145efd4aadfSBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  Use change of basis on local face nodes: %d\n",pcbddc->use_change_on_faces);CHKERRQ(ierr);
146efd4aadfSBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  User defined change of basis matrix: %d\n",!!pcbddc->user_ChangeOfBasisMatrix);CHKERRQ(ierr);
147efd4aadfSBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  Has change of basis matrix: %d\n",!!pcbddc->ChangeOfBasisMatrix);CHKERRQ(ierr);
148efd4aadfSBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  Eliminate dirichlet boundary dofs: %d\n",pcbddc->eliminate_dirdofs);CHKERRQ(ierr);
149efd4aadfSBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  Switch on static condensation ops around the interface preconditioner: %d\n",pcbddc->switch_static);CHKERRQ(ierr);
150efd4aadfSBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  Use exact dirichlet trick: %d\n",pcbddc->use_exact_dirichlet_trick);CHKERRQ(ierr);
15150e0721cSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  Multilevel max levels: %D\n",pcbddc->max_levels);CHKERRQ(ierr);
15250e0721cSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  Multilevel coarsening ratio: %D\n",pcbddc->coarsening_ratio);CHKERRQ(ierr);
153efd4aadfSBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  Use estimated eigs for coarse problem: %d\n",pcbddc->use_coarse_estimates);CHKERRQ(ierr);
154efd4aadfSBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  Use deluxe scaling: %d\n",pcbddc->use_deluxe_scaling);CHKERRQ(ierr);
155efd4aadfSBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  Use deluxe zerorows: %d\n",pcbddc->deluxe_zerorows);CHKERRQ(ierr);
156efd4aadfSBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  Use deluxe singlemat: %d\n",pcbddc->deluxe_singlemat);CHKERRQ(ierr);
157efd4aadfSBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  Rebuild interface graph for Schur principal minors: %d\n",pcbddc->sub_schurs_rebuild);CHKERRQ(ierr);
15850e0721cSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  Number of dofs' layers for the computation of principal minors: %D\n",pcbddc->sub_schurs_layers);CHKERRQ(ierr);
159efd4aadfSBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  Use user CSR graph to compute successive layers: %d\n",pcbddc->sub_schurs_use_useradj);CHKERRQ(ierr);
160bd2a564bSStefano Zampini     if (pcbddc->adaptive_threshold[1] != pcbddc->adaptive_threshold[0]) {
161bd2a564bSStefano Zampini       ierr = PetscViewerASCIIPrintf(viewer,"  Adaptive constraint selection thresholds (active %d, userdefined %d): %g,%g\n",pcbddc->adaptive_selection,pcbddc->adaptive_userdefined,pcbddc->adaptive_threshold[0],pcbddc->adaptive_threshold[1]);CHKERRQ(ierr);
162bd2a564bSStefano Zampini     } else {
163bd2a564bSStefano Zampini       ierr = PetscViewerASCIIPrintf(viewer,"  Adaptive constraint selection threshold (active %d, userdefined %d): %g\n",pcbddc->adaptive_selection,pcbddc->adaptive_userdefined,pcbddc->adaptive_threshold[0]);CHKERRQ(ierr);
164bd2a564bSStefano Zampini     }
16550e0721cSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  Min constraints / connected component: %D\n",pcbddc->adaptive_nmin);CHKERRQ(ierr);
16650e0721cSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  Max constraints / connected component: %D\n",pcbddc->adaptive_nmax);CHKERRQ(ierr);
167efd4aadfSBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  Invert exact Schur complement for adaptive selection: %d\n",pcbddc->sub_schurs_exact_schur);CHKERRQ(ierr);
168efd4aadfSBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  Symmetric computation of primal basis functions: %d\n",pcbddc->symmetric_primal);CHKERRQ(ierr);
16950e0721cSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  Num. Procs. to map coarse adjacency list: %D\n",pcbddc->coarse_adj_red);CHKERRQ(ierr);
17050e0721cSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  Coarse eqs per proc (significant at the coarsest level): %D\n",pcbddc->coarse_eqs_per_proc);CHKERRQ(ierr);
171efd4aadfSBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  Detect disconnected: %d\n",pcbddc->detect_disconnected);CHKERRQ(ierr);
172efd4aadfSBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  Benign subspace trick: %d (change explicit %d)\n",pcbddc->benign_saddle_point,pcbddc->benign_change_explicit);CHKERRQ(ierr);
173efd4aadfSBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  Benign subspace trick is active: %d\n",pcbddc->benign_have_null);CHKERRQ(ierr);
174efd4aadfSBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  Algebraic computation of no-net-flux %d\n",pcbddc->compute_nonetflux);CHKERRQ(ierr);
175b74ba07aSstefano_zampini     if (!pc->setupcalled) PetscFunctionReturn(0);
1766b78500eSPatrick Sanan 
177fbad9177SStefano Zampini     /* compute interface size */
178e9627c49SStefano Zampini     ierr = VecSet(pcis->vec1_B,1.0);CHKERRQ(ierr);
179e9627c49SStefano Zampini     ierr = MatCreateVecs(pc->pmat,&counter,0);CHKERRQ(ierr);
180e9627c49SStefano Zampini     ierr = VecSet(counter,0.0);CHKERRQ(ierr);
181e9627c49SStefano Zampini     ierr = VecScatterBegin(pcis->global_to_B,pcis->vec1_B,counter,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
182e9627c49SStefano Zampini     ierr = VecScatterEnd(pcis->global_to_B,pcis->vec1_B,counter,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
183e9627c49SStefano Zampini     ierr = VecSum(counter,&interface_size);CHKERRQ(ierr);
184e9627c49SStefano Zampini     ierr = VecDestroy(&counter);CHKERRQ(ierr);
185fbad9177SStefano Zampini 
186fbad9177SStefano Zampini     /* compute some statistics on the domain decomposition */
187e9627c49SStefano Zampini     gsum[0] = 1;
188fbad9177SStefano Zampini     gsum[1] = gsum[2] = gsum[3] = gsum[4] = gsum[5] = 0;
189e9627c49SStefano Zampini     loc[0]  = !!pcis->n;
190e9627c49SStefano Zampini     loc[1]  = pcis->n - pcis->n_B;
191e9627c49SStefano Zampini     loc[2]  = pcis->n_B;
192e9627c49SStefano Zampini     loc[3]  = pcbddc->local_primal_size;
193345ecf6cSStefano Zampini     loc[4]  = pcis->n;
194fbad9177SStefano Zampini     loc[5]  = pcbddc->n_local_subs > 0 ? pcbddc->n_local_subs : (pcis->n ? 1 : 0);
195fbad9177SStefano Zampini     loc[6]  = pcbddc->benign_n;
196fbad9177SStefano Zampini     ierr = MPI_Reduce(loc,gsum,6,MPIU_INT64,MPI_SUM,0,PetscObjectComm((PetscObject)pc));CHKERRQ(ierr);
197fbad9177SStefano Zampini     if (!loc[0]) loc[1] = loc[2] = loc[3] = loc[4] = loc[5] = -1;
198fbad9177SStefano Zampini     ierr = MPI_Reduce(loc,gmax,6,MPIU_INT64,MPI_MAX,0,PetscObjectComm((PetscObject)pc));CHKERRQ(ierr);
199fbad9177SStefano Zampini     if (!loc[0]) loc[1] = loc[2] = loc[3] = loc[4] = loc[5] = PETSC_MAX_INT;
200fbad9177SStefano Zampini     ierr = MPI_Reduce(loc,gmin,6,MPIU_INT64,MPI_MIN,0,PetscObjectComm((PetscObject)pc));CHKERRQ(ierr);
201fbad9177SStefano Zampini     ierr = MPI_Reduce(&loc[6],&totbenign,1,MPIU_INT64,MPI_SUM,0,PetscObjectComm((PetscObject)pc));CHKERRQ(ierr);
202e9627c49SStefano Zampini     if (pcbddc->coarse_size) {
203e9627c49SStefano Zampini       ratio1 = pc->pmat->rmap->N/(1.*pcbddc->coarse_size);
204e9627c49SStefano Zampini       ratio2 = PetscRealPart(interface_size)/pcbddc->coarse_size;
205e9627c49SStefano Zampini     }
206efd4aadfSBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  ********************************** STATISTICS AT LEVEL %d **********************************\n",pcbddc->current_level);CHKERRQ(ierr);
20750e0721cSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  Global dofs sizes: all %D interface %D coarse %D\n",pc->pmat->rmap->N,(PetscInt)PetscRealPart(interface_size),pcbddc->coarse_size);CHKERRQ(ierr);
20850e0721cSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  Coarsening ratios: all/coarse %D interface/coarse %D\n",(PetscInt)ratio1,(PetscInt)ratio2);CHKERRQ(ierr);
20950e0721cSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  Active processes : %D\n",(PetscInt)gsum[0]);CHKERRQ(ierr);
21050e0721cSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  Total subdomains : %D\n",(PetscInt)gsum[5]);CHKERRQ(ierr);
211345ecf6cSStefano Zampini     if (pcbddc->benign_have_null) {
21250e0721cSStefano Zampini       ierr = PetscViewerASCIIPrintf(viewer,"  Benign subs      : %D\n",(PetscInt)totbenign);CHKERRQ(ierr);
213345ecf6cSStefano Zampini     }
21450e0721cSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  Dofs type        :\tMIN\tMAX\tMEAN\n");CHKERRQ(ierr);
21550e0721cSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  Interior  dofs   :\t%D\t%D\t%D\n",(PetscInt)gmin[1],(PetscInt)gmax[1],(PetscInt)(gsum[1]/gsum[0]));CHKERRQ(ierr);
21650e0721cSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  Interface dofs   :\t%D\t%D\t%D\n",(PetscInt)gmin[2],(PetscInt)gmax[2],(PetscInt)(gsum[2]/gsum[0]));CHKERRQ(ierr);
21750e0721cSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  Primal    dofs   :\t%D\t%D\t%D\n",(PetscInt)gmin[3],(PetscInt)gmax[3],(PetscInt)(gsum[3]/gsum[0]));CHKERRQ(ierr);
21850e0721cSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  Local     dofs   :\t%D\t%D\t%D\n",(PetscInt)gmin[4],(PetscInt)gmax[4],(PetscInt)(gsum[4]/gsum[0]));CHKERRQ(ierr);
21950e0721cSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  Local     subs   :\t%D\t%D\n"    ,(PetscInt)gmin[5],(PetscInt)gmax[5]);CHKERRQ(ierr);
22050e0721cSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  ********************************** COARSE PROBLEM DETAILS *********************************\n");CHKERRQ(ierr);
22127b6a85dSStefano Zampini     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
222e9627c49SStefano Zampini 
223fbad9177SStefano Zampini     /* the coarse problem can be handled by a different communicator */
224e9627c49SStefano Zampini     if (pcbddc->coarse_ksp) color = 1;
225e9627c49SStefano Zampini     else color = 0;
226e9627c49SStefano Zampini     ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)pc),&rank);CHKERRQ(ierr);
2274b2aedd3SStefano Zampini     ierr = MPI_Comm_size(PetscObjectComm((PetscObject)pc),&size);CHKERRQ(ierr);
228e9627c49SStefano Zampini     ierr = PetscSubcommCreate(PetscObjectComm((PetscObject)pc),&subcomm);CHKERRQ(ierr);
2294b2aedd3SStefano Zampini     ierr = PetscSubcommSetNumber(subcomm,PetscMin(size,2));CHKERRQ(ierr);
230e9627c49SStefano Zampini     ierr = PetscSubcommSetTypeGeneral(subcomm,color,rank);CHKERRQ(ierr);
231e9627c49SStefano Zampini     ierr = PetscViewerGetSubViewer(viewer,PetscSubcommChild(subcomm),&subviewer);CHKERRQ(ierr);
232e9627c49SStefano Zampini     if (color == 1) {
233e9627c49SStefano Zampini       ierr = KSPView(pcbddc->coarse_ksp,subviewer);CHKERRQ(ierr);
234e9627c49SStefano Zampini       ierr = PetscViewerFlush(subviewer);CHKERRQ(ierr);
235e9627c49SStefano Zampini     }
236e9627c49SStefano Zampini     ierr = PetscViewerRestoreSubViewer(viewer,PetscSubcommChild(subcomm),&subviewer);CHKERRQ(ierr);
237e9627c49SStefano Zampini     ierr = PetscSubcommDestroy(&subcomm);CHKERRQ(ierr);
238e9627c49SStefano Zampini     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
239e9627c49SStefano Zampini   }
2406b78500eSPatrick Sanan   PetscFunctionReturn(0);
2416b78500eSPatrick Sanan }
242a13144ffSStefano Zampini 
2431e0482f5SStefano Zampini static PetscErrorCode PCBDDCSetDiscreteGradient_BDDC(PC pc, Mat G, PetscInt order, PetscInt field, PetscBool global, PetscBool conforming)
244a13144ffSStefano Zampini {
245a13144ffSStefano Zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
246a13144ffSStefano Zampini   PetscErrorCode ierr;
247a13144ffSStefano Zampini 
248a13144ffSStefano Zampini   PetscFunctionBegin;
249a13144ffSStefano Zampini   ierr = PetscObjectReference((PetscObject)G);CHKERRQ(ierr);
250a13144ffSStefano Zampini   ierr = MatDestroy(&pcbddc->discretegradient);CHKERRQ(ierr);
251a13144ffSStefano Zampini   pcbddc->discretegradient = G;
252a13144ffSStefano Zampini   pcbddc->nedorder         = order > 0 ? order : -order;
253495a2a07SStefano Zampini   pcbddc->nedfield         = field;
2541e0482f5SStefano Zampini   pcbddc->nedglobal        = global;
2551e0482f5SStefano Zampini   pcbddc->conforming       = conforming;
256a13144ffSStefano Zampini   PetscFunctionReturn(0);
257a13144ffSStefano Zampini }
258a13144ffSStefano Zampini 
259a13144ffSStefano Zampini /*@
260a13144ffSStefano Zampini  PCBDDCSetDiscreteGradient - Sets the discrete gradient
261a13144ffSStefano Zampini 
262a13144ffSStefano Zampini    Collective on PC
263a13144ffSStefano Zampini 
264a13144ffSStefano Zampini    Input Parameters:
265a13144ffSStefano Zampini +  pc         - the preconditioning context
266a13144ffSStefano Zampini .  G          - the discrete gradient matrix (should be in AIJ format)
267a13144ffSStefano Zampini .  order      - the order of the Nedelec space (1 for the lowest order)
268495a2a07SStefano Zampini .  field      - the field id of the Nedelec dofs (not used if the fields have not been specified)
2691e0482f5SStefano Zampini .  global     - the type of global ordering for the rows of G
270a13144ffSStefano Zampini -  conforming - whether the mesh is conforming or not
271a13144ffSStefano Zampini 
272a13144ffSStefano Zampini    Level: advanced
273a13144ffSStefano Zampini 
274a13144ffSStefano Zampini    Notes: The discrete gradient matrix G is used to analyze the subdomain edges, and it should not contain any zero entry.
275495a2a07SStefano Zampini           For variable order spaces, the order should be set to zero.
2761e0482f5SStefano Zampini           If global is true, the rows of G should be given in global ordering for the whole dofs;
2771e0482f5SStefano Zampini           if false, the ordering should be global for the Nedelec field.
2781e0482f5SStefano Zampini           In the latter case, it should hold gid[i] < gid[j] iff geid[i] < geid[j], with gid the global orderding for all the dofs
2791e0482f5SStefano Zampini           and geid the one for the Nedelec field.
280a13144ffSStefano Zampini 
281495a2a07SStefano Zampini .seealso: PCBDDC,PCBDDCSetDofsSplitting(),PCBDDCSetDofsSplittingLocal()
282a13144ffSStefano Zampini @*/
2831e0482f5SStefano Zampini PetscErrorCode PCBDDCSetDiscreteGradient(PC pc, Mat G, PetscInt order, PetscInt field, PetscBool global, PetscBool conforming)
284a13144ffSStefano Zampini {
285a13144ffSStefano Zampini   PetscErrorCode ierr;
286a13144ffSStefano Zampini 
287a13144ffSStefano Zampini   PetscFunctionBegin;
288a13144ffSStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
289a13144ffSStefano Zampini   PetscValidHeaderSpecific(G,MAT_CLASSID,2);
290a13144ffSStefano Zampini   PetscValidLogicalCollectiveInt(pc,order,3);
2911e0482f5SStefano Zampini   PetscValidLogicalCollectiveInt(pc,field,4);
2921e0482f5SStefano Zampini   PetscValidLogicalCollectiveBool(pc,global,5);
2931e0482f5SStefano Zampini   PetscValidLogicalCollectiveBool(pc,conforming,6);
2941e0482f5SStefano Zampini   PetscCheckSameComm(pc,1,G,2);
2951e0482f5SStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetDiscreteGradient_C",(PC,Mat,PetscInt,PetscInt,PetscBool,PetscBool),(pc,G,order,field,global,conforming));CHKERRQ(ierr);
296a13144ffSStefano Zampini   PetscFunctionReturn(0);
297a13144ffSStefano Zampini }
298a13144ffSStefano Zampini 
2998ae0ca82SStefano Zampini static PetscErrorCode PCBDDCSetDivergenceMat_BDDC(PC pc, Mat divudotp, PetscBool trans, IS vl2l)
300a198735bSStefano Zampini {
301a198735bSStefano Zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
302a198735bSStefano Zampini   PetscErrorCode ierr;
3036b78500eSPatrick Sanan 
304a198735bSStefano Zampini   PetscFunctionBegin;
305a198735bSStefano Zampini   ierr = PetscObjectReference((PetscObject)divudotp);CHKERRQ(ierr);
306a198735bSStefano Zampini   ierr = MatDestroy(&pcbddc->divudotp);CHKERRQ(ierr);
307a198735bSStefano Zampini   pcbddc->divudotp = divudotp;
3088ae0ca82SStefano Zampini   pcbddc->divudotp_trans = trans;
309a198735bSStefano Zampini   pcbddc->compute_nonetflux = PETSC_TRUE;
310a198735bSStefano Zampini   if (vl2l) {
311a198735bSStefano Zampini     ierr = PetscObjectReference((PetscObject)vl2l);CHKERRQ(ierr);
312fa23a32eSStefano Zampini     ierr = ISDestroy(&pcbddc->divudotp_vl2l);CHKERRQ(ierr);
313a198735bSStefano Zampini     pcbddc->divudotp_vl2l = vl2l;
314a198735bSStefano Zampini   }
315a198735bSStefano Zampini   PetscFunctionReturn(0);
316a198735bSStefano Zampini }
3173d996552SStefano Zampini 
318a198735bSStefano Zampini /*@
319a198735bSStefano Zampini  PCBDDCSetDivergenceMat - Sets the linear operator representing \int_\Omega \div {\bf u} \cdot p dx
320a198735bSStefano Zampini 
321a198735bSStefano Zampini    Collective on PC
322a198735bSStefano Zampini 
323a198735bSStefano Zampini    Input Parameters:
324a198735bSStefano Zampini +  pc - the preconditioning context
325a198735bSStefano Zampini .  divudotp - the matrix (must be of type MATIS)
3268ae0ca82SStefano Zampini .  trans - if trans if false (resp. true), then pressures are in the test (trial) space and velocities are in the trial (test) space.
32705a3bf82SStefano Zampini -  vl2l - optional index set describing the local (wrt the local matrix in divudotp) to local (wrt the local matrix in the preconditioning matrix) map for the velocities
328a198735bSStefano Zampini 
329a198735bSStefano Zampini    Level: advanced
330a198735bSStefano Zampini 
3318ae0ca82SStefano Zampini    Notes: This auxiliary matrix is used to compute quadrature weights representing the net-flux across subdomain boundaries
33205a3bf82SStefano Zampini           If vl2l is NULL, the local ordering for velocities in divudotp should match that of the preconditioning matrix
333a198735bSStefano Zampini 
334a198735bSStefano Zampini .seealso: PCBDDC
335a198735bSStefano Zampini @*/
3368ae0ca82SStefano Zampini PetscErrorCode PCBDDCSetDivergenceMat(PC pc, Mat divudotp, PetscBool trans, IS vl2l)
337a198735bSStefano Zampini {
338a198735bSStefano Zampini   PetscBool      ismatis;
339a198735bSStefano Zampini   PetscErrorCode ierr;
340a198735bSStefano Zampini 
341a198735bSStefano Zampini   PetscFunctionBegin;
342a198735bSStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
343a198735bSStefano Zampini   PetscValidHeaderSpecific(divudotp,MAT_CLASSID,2);
344a198735bSStefano Zampini   PetscCheckSameComm(pc,1,divudotp,2);
3458ae0ca82SStefano Zampini   PetscValidLogicalCollectiveBool(pc,trans,3);
3468ae0ca82SStefano Zampini   if (vl2l) PetscValidHeaderSpecific(divudotp,IS_CLASSID,4);
347a198735bSStefano Zampini   ierr = PetscObjectTypeCompare((PetscObject)divudotp,MATIS,&ismatis);CHKERRQ(ierr);
348a198735bSStefano Zampini   if (!ismatis) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_ARG_WRONG,"Divergence matrix needs to be of type MATIS");
3498ae0ca82SStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetDivergenceMat_C",(PC,Mat,PetscBool,IS),(pc,divudotp,trans,vl2l));CHKERRQ(ierr);
350a198735bSStefano Zampini   PetscFunctionReturn(0);
351a198735bSStefano Zampini }
3522d505d7fSStefano Zampini 
3531dd7afcfSStefano Zampini static PetscErrorCode PCBDDCSetChangeOfBasisMat_BDDC(PC pc, Mat change, PetscBool interior)
354b9b85e73SStefano Zampini {
355b9b85e73SStefano Zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
356b9b85e73SStefano Zampini   PetscErrorCode ierr;
357b9b85e73SStefano Zampini 
358b9b85e73SStefano Zampini   PetscFunctionBegin;
359b9b85e73SStefano Zampini   ierr = PetscObjectReference((PetscObject)change);CHKERRQ(ierr);
36056282151SStefano Zampini   ierr = MatDestroy(&pcbddc->user_ChangeOfBasisMatrix);CHKERRQ(ierr);
361b9b85e73SStefano Zampini   pcbddc->user_ChangeOfBasisMatrix = change;
3621dd7afcfSStefano Zampini   pcbddc->change_interior = interior;
363b9b85e73SStefano Zampini   PetscFunctionReturn(0);
364b9b85e73SStefano Zampini }
365b9b85e73SStefano Zampini /*@
366906d46d4SStefano Zampini  PCBDDCSetChangeOfBasisMat - Set user defined change of basis for dofs
367b9b85e73SStefano Zampini 
368b9b85e73SStefano Zampini    Collective on PC
369b9b85e73SStefano Zampini 
370b9b85e73SStefano Zampini    Input Parameters:
371b9b85e73SStefano Zampini +  pc - the preconditioning context
3721dd7afcfSStefano Zampini .  change - the change of basis matrix
3731dd7afcfSStefano Zampini -  interior - whether or not the change of basis modifies interior dofs
374b9b85e73SStefano Zampini 
375b9b85e73SStefano Zampini    Level: intermediate
376b9b85e73SStefano Zampini 
377b9b85e73SStefano Zampini    Notes:
378b9b85e73SStefano Zampini 
379b9b85e73SStefano Zampini .seealso: PCBDDC
380b9b85e73SStefano Zampini @*/
3811dd7afcfSStefano Zampini PetscErrorCode PCBDDCSetChangeOfBasisMat(PC pc, Mat change, PetscBool interior)
382b9b85e73SStefano Zampini {
383b9b85e73SStefano Zampini   PetscErrorCode ierr;
384b9b85e73SStefano Zampini 
385b9b85e73SStefano Zampini   PetscFunctionBegin;
386b9b85e73SStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
387b9b85e73SStefano Zampini   PetscValidHeaderSpecific(change,MAT_CLASSID,2);
388906d46d4SStefano Zampini   PetscCheckSameComm(pc,1,change,2);
389906d46d4SStefano Zampini   if (pc->mat) {
390906d46d4SStefano Zampini     PetscInt rows_c,cols_c,rows,cols;
391906d46d4SStefano Zampini     ierr = MatGetSize(pc->mat,&rows,&cols);CHKERRQ(ierr);
392906d46d4SStefano Zampini     ierr = MatGetSize(change,&rows_c,&cols_c);CHKERRQ(ierr);
393e0fe2d75SToby Isaac     if (rows_c != rows) SETERRQ2(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Invalid number of rows for change of basis matrix! %D != %D",rows_c,rows);
394e0fe2d75SToby Isaac     if (cols_c != cols) SETERRQ2(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Invalid number of columns for change of basis matrix! %D != %D",cols_c,cols);
395906d46d4SStefano Zampini     ierr = MatGetLocalSize(pc->mat,&rows,&cols);CHKERRQ(ierr);
396906d46d4SStefano Zampini     ierr = MatGetLocalSize(change,&rows_c,&cols_c);CHKERRQ(ierr);
397e0fe2d75SToby Isaac     if (rows_c != rows) SETERRQ2(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Invalid number of local rows for change of basis matrix! %D != %D",rows_c,rows);
398e0fe2d75SToby Isaac     if (cols_c != cols) SETERRQ2(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Invalid number of local columns for change of basis matrix! %D != %D",cols_c,cols);
399906d46d4SStefano Zampini   }
4001dd7afcfSStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetChangeOfBasisMat_C",(PC,Mat,PetscBool),(pc,change,interior));CHKERRQ(ierr);
401b9b85e73SStefano Zampini   PetscFunctionReturn(0);
402b9b85e73SStefano Zampini }
4032d505d7fSStefano Zampini 
40430368db7SStefano Zampini static PetscErrorCode PCBDDCSetPrimalVerticesIS_BDDC(PC pc, IS PrimalVertices)
40530368db7SStefano Zampini {
40630368db7SStefano Zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
40756282151SStefano Zampini   PetscBool      isequal = PETSC_FALSE;
40830368db7SStefano Zampini   PetscErrorCode ierr;
40930368db7SStefano Zampini 
41030368db7SStefano Zampini   PetscFunctionBegin;
41156282151SStefano Zampini   ierr = PetscObjectReference((PetscObject)PrimalVertices);CHKERRQ(ierr);
41256282151SStefano Zampini   if (pcbddc->user_primal_vertices) {
41356282151SStefano Zampini     ierr = ISEqual(PrimalVertices,pcbddc->user_primal_vertices,&isequal);CHKERRQ(ierr);
41456282151SStefano Zampini   }
41530368db7SStefano Zampini   ierr = ISDestroy(&pcbddc->user_primal_vertices);CHKERRQ(ierr);
41630368db7SStefano Zampini   ierr = ISDestroy(&pcbddc->user_primal_vertices_local);CHKERRQ(ierr);
41730368db7SStefano Zampini   pcbddc->user_primal_vertices = PrimalVertices;
41856282151SStefano Zampini   if (!isequal) pcbddc->recompute_topography = PETSC_TRUE;
41930368db7SStefano Zampini   PetscFunctionReturn(0);
42030368db7SStefano Zampini }
421ab8c8b98SStefano Zampini 
42230368db7SStefano Zampini /*@
42330368db7SStefano Zampini  PCBDDCSetPrimalVerticesIS - Set additional user defined primal vertices in PCBDDC
42430368db7SStefano Zampini 
42530368db7SStefano Zampini    Collective
42630368db7SStefano Zampini 
42730368db7SStefano Zampini    Input Parameters:
42830368db7SStefano Zampini +  pc - the preconditioning context
42930368db7SStefano Zampini -  PrimalVertices - index set of primal vertices in global numbering (can be empty)
43030368db7SStefano Zampini 
43130368db7SStefano Zampini    Level: intermediate
43230368db7SStefano Zampini 
43330368db7SStefano Zampini    Notes:
43430368db7SStefano Zampini      Any process can list any global node
43530368db7SStefano Zampini 
43630368db7SStefano Zampini .seealso: PCBDDC
43730368db7SStefano Zampini @*/
43830368db7SStefano Zampini PetscErrorCode PCBDDCSetPrimalVerticesIS(PC pc, IS PrimalVertices)
43930368db7SStefano Zampini {
44030368db7SStefano Zampini   PetscErrorCode ierr;
44130368db7SStefano Zampini 
44230368db7SStefano Zampini   PetscFunctionBegin;
44330368db7SStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
44430368db7SStefano Zampini   PetscValidHeaderSpecific(PrimalVertices,IS_CLASSID,2);
44530368db7SStefano Zampini   PetscCheckSameComm(pc,1,PrimalVertices,2);
44630368db7SStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetPrimalVerticesIS_C",(PC,IS),(pc,PrimalVertices));CHKERRQ(ierr);
44730368db7SStefano Zampini   PetscFunctionReturn(0);
44830368db7SStefano Zampini }
4492d505d7fSStefano Zampini 
450674ae819SStefano Zampini static PetscErrorCode PCBDDCSetPrimalVerticesLocalIS_BDDC(PC pc, IS PrimalVertices)
451674ae819SStefano Zampini {
452674ae819SStefano Zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
45356282151SStefano Zampini   PetscBool      isequal = PETSC_FALSE;
454674ae819SStefano Zampini   PetscErrorCode ierr;
4551e6b0712SBarry Smith 
456674ae819SStefano Zampini   PetscFunctionBegin;
45756282151SStefano Zampini   ierr = PetscObjectReference((PetscObject)PrimalVertices);CHKERRQ(ierr);
45856282151SStefano Zampini   if (pcbddc->user_primal_vertices_local) {
45956282151SStefano Zampini     ierr = ISEqual(PrimalVertices,pcbddc->user_primal_vertices_local,&isequal);CHKERRQ(ierr);
46056282151SStefano Zampini   }
461674ae819SStefano Zampini   ierr = ISDestroy(&pcbddc->user_primal_vertices);CHKERRQ(ierr);
46230368db7SStefano Zampini   ierr = ISDestroy(&pcbddc->user_primal_vertices_local);CHKERRQ(ierr);
46330368db7SStefano Zampini   pcbddc->user_primal_vertices_local = PrimalVertices;
46456282151SStefano Zampini   if (!isequal) pcbddc->recompute_topography = PETSC_TRUE;
465674ae819SStefano Zampini   PetscFunctionReturn(0);
466674ae819SStefano Zampini }
467674ae819SStefano Zampini /*@
46828509bceSStefano Zampini  PCBDDCSetPrimalVerticesLocalIS - Set additional user defined primal vertices in PCBDDC
469674ae819SStefano Zampini 
47017eb1463SStefano Zampini    Collective
471674ae819SStefano Zampini 
472674ae819SStefano Zampini    Input Parameters:
473674ae819SStefano Zampini +  pc - the preconditioning context
47417eb1463SStefano Zampini -  PrimalVertices - index set of primal vertices in local numbering (can be empty)
475674ae819SStefano Zampini 
476674ae819SStefano Zampini    Level: intermediate
477674ae819SStefano Zampini 
478674ae819SStefano Zampini    Notes:
479674ae819SStefano Zampini 
480674ae819SStefano Zampini .seealso: PCBDDC
481674ae819SStefano Zampini @*/
482674ae819SStefano Zampini PetscErrorCode PCBDDCSetPrimalVerticesLocalIS(PC pc, IS PrimalVertices)
483674ae819SStefano Zampini {
484674ae819SStefano Zampini   PetscErrorCode ierr;
485674ae819SStefano Zampini 
486674ae819SStefano Zampini   PetscFunctionBegin;
487674ae819SStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
488674ae819SStefano Zampini   PetscValidHeaderSpecific(PrimalVertices,IS_CLASSID,2);
48917eb1463SStefano Zampini   PetscCheckSameComm(pc,1,PrimalVertices,2);
490674ae819SStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetPrimalVerticesLocalIS_C",(PC,IS),(pc,PrimalVertices));CHKERRQ(ierr);
491674ae819SStefano Zampini   PetscFunctionReturn(0);
492674ae819SStefano Zampini }
4932d505d7fSStefano Zampini 
4944fad6a16SStefano Zampini static PetscErrorCode PCBDDCSetCoarseningRatio_BDDC(PC pc,PetscInt k)
4954fad6a16SStefano Zampini {
4964fad6a16SStefano Zampini   PC_BDDC  *pcbddc = (PC_BDDC*)pc->data;
4974fad6a16SStefano Zampini 
4984fad6a16SStefano Zampini   PetscFunctionBegin;
4994fad6a16SStefano Zampini   pcbddc->coarsening_ratio = k;
5004fad6a16SStefano Zampini   PetscFunctionReturn(0);
5014fad6a16SStefano Zampini }
5021e6b0712SBarry Smith 
5034fad6a16SStefano Zampini /*@
50428509bceSStefano Zampini  PCBDDCSetCoarseningRatio - Set coarsening ratio used in multilevel
5054fad6a16SStefano Zampini 
5064fad6a16SStefano Zampini    Logically collective on PC
5074fad6a16SStefano Zampini 
5084fad6a16SStefano Zampini    Input Parameters:
5094fad6a16SStefano Zampini +  pc - the preconditioning context
51028509bceSStefano Zampini -  k - coarsening ratio (H/h at the coarser level)
5114fad6a16SStefano Zampini 
5120f202f7eSStefano Zampini    Options Database Keys:
5130f202f7eSStefano Zampini .    -pc_bddc_coarsening_ratio
5144fad6a16SStefano Zampini 
5154fad6a16SStefano Zampini    Level: intermediate
5164fad6a16SStefano Zampini 
5174fad6a16SStefano Zampini    Notes:
5180f202f7eSStefano Zampini      Approximatively k subdomains at the finer level will be aggregated into a single subdomain at the coarser level
5194fad6a16SStefano Zampini 
5200f202f7eSStefano Zampini .seealso: PCBDDC, PCBDDCSetLevels()
5214fad6a16SStefano Zampini @*/
5224fad6a16SStefano Zampini PetscErrorCode PCBDDCSetCoarseningRatio(PC pc,PetscInt k)
5234fad6a16SStefano Zampini {
5244fad6a16SStefano Zampini   PetscErrorCode ierr;
5254fad6a16SStefano Zampini 
5264fad6a16SStefano Zampini   PetscFunctionBegin;
5274fad6a16SStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
5282b510759SStefano Zampini   PetscValidLogicalCollectiveInt(pc,k,2);
5294fad6a16SStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetCoarseningRatio_C",(PC,PetscInt),(pc,k));CHKERRQ(ierr);
5304fad6a16SStefano Zampini   PetscFunctionReturn(0);
5314fad6a16SStefano Zampini }
5322b510759SStefano Zampini 
533b8ffe317SStefano Zampini /* The following functions (PCBDDCSetUseExactDirichlet PCBDDCSetLevel) are not public */
534b8ffe317SStefano Zampini static PetscErrorCode PCBDDCSetUseExactDirichlet_BDDC(PC pc,PetscBool flg)
535b8ffe317SStefano Zampini {
536b8ffe317SStefano Zampini   PC_BDDC  *pcbddc = (PC_BDDC*)pc->data;
537b8ffe317SStefano Zampini 
538b8ffe317SStefano Zampini   PetscFunctionBegin;
53985c4d303SStefano Zampini   pcbddc->use_exact_dirichlet_trick = flg;
540b8ffe317SStefano Zampini   PetscFunctionReturn(0);
541b8ffe317SStefano Zampini }
542b8ffe317SStefano Zampini 
543b8ffe317SStefano Zampini PetscErrorCode PCBDDCSetUseExactDirichlet(PC pc,PetscBool flg)
5442b510759SStefano Zampini {
5452b510759SStefano Zampini   PetscErrorCode ierr;
5462b510759SStefano Zampini 
5472b510759SStefano Zampini   PetscFunctionBegin;
5482b510759SStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
549b8ffe317SStefano Zampini   PetscValidLogicalCollectiveBool(pc,flg,2);
550b8ffe317SStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetUseExactDirichlet_C",(PC,PetscBool),(pc,flg));CHKERRQ(ierr);
5512b510759SStefano Zampini   PetscFunctionReturn(0);
5522b510759SStefano Zampini }
5531e6b0712SBarry Smith 
5542b510759SStefano Zampini static PetscErrorCode PCBDDCSetLevel_BDDC(PC pc,PetscInt level)
5554fad6a16SStefano Zampini {
5564fad6a16SStefano Zampini   PC_BDDC  *pcbddc = (PC_BDDC*)pc->data;
5574fad6a16SStefano Zampini 
5584fad6a16SStefano Zampini   PetscFunctionBegin;
5592b510759SStefano Zampini   pcbddc->current_level = level;
5604fad6a16SStefano Zampini   PetscFunctionReturn(0);
5614fad6a16SStefano Zampini }
5621e6b0712SBarry Smith 
563b8ffe317SStefano Zampini PetscErrorCode PCBDDCSetLevel(PC pc,PetscInt level)
564b8ffe317SStefano Zampini {
565b8ffe317SStefano Zampini   PetscErrorCode ierr;
566b8ffe317SStefano Zampini 
567b8ffe317SStefano Zampini   PetscFunctionBegin;
568b8ffe317SStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
569b8ffe317SStefano Zampini   PetscValidLogicalCollectiveInt(pc,level,2);
570b8ffe317SStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetLevel_C",(PC,PetscInt),(pc,level));CHKERRQ(ierr);
571b8ffe317SStefano Zampini   PetscFunctionReturn(0);
572b8ffe317SStefano Zampini }
573b8ffe317SStefano Zampini 
5742b510759SStefano Zampini static PetscErrorCode PCBDDCSetLevels_BDDC(PC pc,PetscInt levels)
5752b510759SStefano Zampini {
5762b510759SStefano Zampini   PC_BDDC  *pcbddc = (PC_BDDC*)pc->data;
5772b510759SStefano Zampini 
5782b510759SStefano Zampini   PetscFunctionBegin;
5792b510759SStefano Zampini   pcbddc->max_levels = levels;
5802b510759SStefano Zampini   PetscFunctionReturn(0);
5812b510759SStefano Zampini }
5822b510759SStefano Zampini 
5834fad6a16SStefano Zampini /*@
58428509bceSStefano Zampini  PCBDDCSetLevels - Sets the maximum number of levels for multilevel
5854fad6a16SStefano Zampini 
5864fad6a16SStefano Zampini    Logically collective on PC
5874fad6a16SStefano Zampini 
5884fad6a16SStefano Zampini    Input Parameters:
5894fad6a16SStefano Zampini +  pc - the preconditioning context
59028509bceSStefano Zampini -  levels - the maximum number of levels (max 9)
5914fad6a16SStefano Zampini 
5920f202f7eSStefano Zampini    Options Database Keys:
5930f202f7eSStefano Zampini .    -pc_bddc_levels
5944fad6a16SStefano Zampini 
5954fad6a16SStefano Zampini    Level: intermediate
5964fad6a16SStefano Zampini 
5974fad6a16SStefano Zampini    Notes:
5980f202f7eSStefano Zampini      Default value is 0, i.e. traditional one-level BDDC
5994fad6a16SStefano Zampini 
6000f202f7eSStefano Zampini .seealso: PCBDDC, PCBDDCSetCoarseningRatio()
6014fad6a16SStefano Zampini @*/
6022b510759SStefano Zampini PetscErrorCode PCBDDCSetLevels(PC pc,PetscInt levels)
6034fad6a16SStefano Zampini {
6044fad6a16SStefano Zampini   PetscErrorCode ierr;
6054fad6a16SStefano Zampini 
6064fad6a16SStefano Zampini   PetscFunctionBegin;
6074fad6a16SStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
6082b510759SStefano Zampini   PetscValidLogicalCollectiveInt(pc,levels,2);
609312be037SStefano Zampini   if (levels > 99) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Maximum number of levels for bddc is 99\n");
6102b510759SStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetLevels_C",(PC,PetscInt),(pc,levels));CHKERRQ(ierr);
6114fad6a16SStefano Zampini   PetscFunctionReturn(0);
6124fad6a16SStefano Zampini }
6131e6b0712SBarry Smith 
6143b03a366Sstefano_zampini static PetscErrorCode PCBDDCSetDirichletBoundaries_BDDC(PC pc,IS DirichletBoundaries)
6153b03a366Sstefano_zampini {
6163b03a366Sstefano_zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
61756282151SStefano Zampini   PetscBool      isequal = PETSC_FALSE;
6183b03a366Sstefano_zampini   PetscErrorCode ierr;
6193b03a366Sstefano_zampini 
6203b03a366Sstefano_zampini   PetscFunctionBegin;
62156282151SStefano Zampini   ierr = PetscObjectReference((PetscObject)DirichletBoundaries);CHKERRQ(ierr);
62256282151SStefano Zampini   if (pcbddc->DirichletBoundaries) {
62356282151SStefano Zampini     ierr = ISEqual(DirichletBoundaries,pcbddc->DirichletBoundaries,&isequal);CHKERRQ(ierr);
62456282151SStefano Zampini   }
625785d1243SStefano Zampini   /* last user setting takes precendence -> destroy any other customization */
626785d1243SStefano Zampini   ierr = ISDestroy(&pcbddc->DirichletBoundariesLocal);CHKERRQ(ierr);
6273b03a366Sstefano_zampini   ierr = ISDestroy(&pcbddc->DirichletBoundaries);CHKERRQ(ierr);
62836e030ebSStefano Zampini   pcbddc->DirichletBoundaries = DirichletBoundaries;
62956282151SStefano Zampini   if (!isequal) pcbddc->recompute_topography = PETSC_TRUE;
6303b03a366Sstefano_zampini   PetscFunctionReturn(0);
6313b03a366Sstefano_zampini }
6321e6b0712SBarry Smith 
6333b03a366Sstefano_zampini /*@
63428509bceSStefano Zampini  PCBDDCSetDirichletBoundaries - Set IS defining Dirichlet boundaries for the global problem.
6353b03a366Sstefano_zampini 
636785d1243SStefano Zampini    Collective
6373b03a366Sstefano_zampini 
6383b03a366Sstefano_zampini    Input Parameters:
6393b03a366Sstefano_zampini +  pc - the preconditioning context
640785d1243SStefano Zampini -  DirichletBoundaries - parallel IS defining the Dirichlet boundaries
6413b03a366Sstefano_zampini 
6423b03a366Sstefano_zampini    Level: intermediate
6433b03a366Sstefano_zampini 
6440f202f7eSStefano Zampini    Notes:
6450f202f7eSStefano Zampini      Provide the information if you used MatZeroRows/Columns routines. Any process can list any global node
6463b03a366Sstefano_zampini 
6470f202f7eSStefano Zampini .seealso: PCBDDC, PCBDDCSetDirichletBoundariesLocal(), MatZeroRows(), MatZeroRowsColumns()
6483b03a366Sstefano_zampini @*/
6493b03a366Sstefano_zampini PetscErrorCode PCBDDCSetDirichletBoundaries(PC pc,IS DirichletBoundaries)
6503b03a366Sstefano_zampini {
6513b03a366Sstefano_zampini   PetscErrorCode ierr;
6523b03a366Sstefano_zampini 
6533b03a366Sstefano_zampini   PetscFunctionBegin;
6543b03a366Sstefano_zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
655674ae819SStefano Zampini   PetscValidHeaderSpecific(DirichletBoundaries,IS_CLASSID,2);
656785d1243SStefano Zampini   PetscCheckSameComm(pc,1,DirichletBoundaries,2);
6573b03a366Sstefano_zampini   ierr = PetscTryMethod(pc,"PCBDDCSetDirichletBoundaries_C",(PC,IS),(pc,DirichletBoundaries));CHKERRQ(ierr);
6583b03a366Sstefano_zampini   PetscFunctionReturn(0);
6593b03a366Sstefano_zampini }
6601e6b0712SBarry Smith 
66182ba6b80SStefano Zampini static PetscErrorCode PCBDDCSetDirichletBoundariesLocal_BDDC(PC pc,IS DirichletBoundaries)
6623b03a366Sstefano_zampini {
6633b03a366Sstefano_zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
66456282151SStefano Zampini   PetscBool      isequal = PETSC_FALSE;
6653b03a366Sstefano_zampini   PetscErrorCode ierr;
6663b03a366Sstefano_zampini 
6673b03a366Sstefano_zampini   PetscFunctionBegin;
66856282151SStefano Zampini   ierr = PetscObjectReference((PetscObject)DirichletBoundaries);CHKERRQ(ierr);
66956282151SStefano Zampini   if (pcbddc->DirichletBoundariesLocal) {
67056282151SStefano Zampini     ierr = ISEqual(DirichletBoundaries,pcbddc->DirichletBoundariesLocal,&isequal);CHKERRQ(ierr);
67156282151SStefano Zampini   }
672785d1243SStefano Zampini   /* last user setting takes precendence -> destroy any other customization */
673785d1243SStefano Zampini   ierr = ISDestroy(&pcbddc->DirichletBoundariesLocal);CHKERRQ(ierr);
6743b03a366Sstefano_zampini   ierr = ISDestroy(&pcbddc->DirichletBoundaries);CHKERRQ(ierr);
675785d1243SStefano Zampini   pcbddc->DirichletBoundariesLocal = DirichletBoundaries;
67656282151SStefano Zampini   if (!isequal) pcbddc->recompute_topography = PETSC_TRUE;
6773b03a366Sstefano_zampini   PetscFunctionReturn(0);
6783b03a366Sstefano_zampini }
6793b03a366Sstefano_zampini 
6803b03a366Sstefano_zampini /*@
68182ba6b80SStefano Zampini  PCBDDCSetDirichletBoundariesLocal - Set IS defining Dirichlet boundaries for the global problem in local ordering.
6823b03a366Sstefano_zampini 
683785d1243SStefano Zampini    Collective
6843b03a366Sstefano_zampini 
6853b03a366Sstefano_zampini    Input Parameters:
6863b03a366Sstefano_zampini +  pc - the preconditioning context
68782ba6b80SStefano Zampini -  DirichletBoundaries - parallel IS defining the Dirichlet boundaries (in local ordering)
6883b03a366Sstefano_zampini 
6893b03a366Sstefano_zampini    Level: intermediate
6903b03a366Sstefano_zampini 
6913b03a366Sstefano_zampini    Notes:
6923b03a366Sstefano_zampini 
6930f202f7eSStefano Zampini .seealso: PCBDDC, PCBDDCSetDirichletBoundaries(), MatZeroRows(), MatZeroRowsColumns()
6943b03a366Sstefano_zampini @*/
69582ba6b80SStefano Zampini PetscErrorCode PCBDDCSetDirichletBoundariesLocal(PC pc,IS DirichletBoundaries)
6963b03a366Sstefano_zampini {
6973b03a366Sstefano_zampini   PetscErrorCode ierr;
6983b03a366Sstefano_zampini 
6993b03a366Sstefano_zampini   PetscFunctionBegin;
7003b03a366Sstefano_zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
7013b03a366Sstefano_zampini   PetscValidHeaderSpecific(DirichletBoundaries,IS_CLASSID,2);
70282ba6b80SStefano Zampini   PetscCheckSameComm(pc,1,DirichletBoundaries,2);
70382ba6b80SStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetDirichletBoundariesLocal_C",(PC,IS),(pc,DirichletBoundaries));CHKERRQ(ierr);
7043b03a366Sstefano_zampini   PetscFunctionReturn(0);
7053b03a366Sstefano_zampini }
7063b03a366Sstefano_zampini 
70753cdbc3dSStefano Zampini static PetscErrorCode PCBDDCSetNeumannBoundaries_BDDC(PC pc,IS NeumannBoundaries)
7080c7d97c5SJed Brown {
7090c7d97c5SJed Brown   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
71056282151SStefano Zampini   PetscBool      isequal = PETSC_FALSE;
71153cdbc3dSStefano Zampini   PetscErrorCode ierr;
7120c7d97c5SJed Brown 
7130c7d97c5SJed Brown   PetscFunctionBegin;
71456282151SStefano Zampini   ierr = PetscObjectReference((PetscObject)NeumannBoundaries);CHKERRQ(ierr);
71556282151SStefano Zampini   if (pcbddc->NeumannBoundaries) {
71656282151SStefano Zampini     ierr = ISEqual(NeumannBoundaries,pcbddc->NeumannBoundaries,&isequal);CHKERRQ(ierr);
71756282151SStefano Zampini   }
718785d1243SStefano Zampini   /* last user setting takes precendence -> destroy any other customization */
719785d1243SStefano Zampini   ierr = ISDestroy(&pcbddc->NeumannBoundariesLocal);CHKERRQ(ierr);
72053cdbc3dSStefano Zampini   ierr = ISDestroy(&pcbddc->NeumannBoundaries);CHKERRQ(ierr);
72136e030ebSStefano Zampini   pcbddc->NeumannBoundaries = NeumannBoundaries;
72256282151SStefano Zampini   if (!isequal) pcbddc->recompute_topography = PETSC_TRUE;
7230c7d97c5SJed Brown   PetscFunctionReturn(0);
7240c7d97c5SJed Brown }
7251e6b0712SBarry Smith 
72657527edcSJed Brown /*@
72728509bceSStefano Zampini  PCBDDCSetNeumannBoundaries - Set IS defining Neumann boundaries for the global problem.
72857527edcSJed Brown 
729785d1243SStefano Zampini    Collective
73057527edcSJed Brown 
73157527edcSJed Brown    Input Parameters:
73257527edcSJed Brown +  pc - the preconditioning context
733785d1243SStefano Zampini -  NeumannBoundaries - parallel IS defining the Neumann boundaries
73457527edcSJed Brown 
73557527edcSJed Brown    Level: intermediate
73657527edcSJed Brown 
7370f202f7eSStefano Zampini    Notes:
7380f202f7eSStefano Zampini      Any process can list any global node
73957527edcSJed Brown 
7400f202f7eSStefano Zampini .seealso: PCBDDC, PCBDDCSetNeumannBoundariesLocal()
74157527edcSJed Brown @*/
74253cdbc3dSStefano Zampini PetscErrorCode PCBDDCSetNeumannBoundaries(PC pc,IS NeumannBoundaries)
7430c7d97c5SJed Brown {
7440c7d97c5SJed Brown   PetscErrorCode ierr;
7450c7d97c5SJed Brown 
7460c7d97c5SJed Brown   PetscFunctionBegin;
7470c7d97c5SJed Brown   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
748674ae819SStefano Zampini   PetscValidHeaderSpecific(NeumannBoundaries,IS_CLASSID,2);
749785d1243SStefano Zampini   PetscCheckSameComm(pc,1,NeumannBoundaries,2);
75053cdbc3dSStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetNeumannBoundaries_C",(PC,IS),(pc,NeumannBoundaries));CHKERRQ(ierr);
75153cdbc3dSStefano Zampini   PetscFunctionReturn(0);
75253cdbc3dSStefano Zampini }
7531e6b0712SBarry Smith 
75482ba6b80SStefano Zampini static PetscErrorCode PCBDDCSetNeumannBoundariesLocal_BDDC(PC pc,IS NeumannBoundaries)
7550c7d97c5SJed Brown {
7560c7d97c5SJed Brown   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
75756282151SStefano Zampini   PetscBool      isequal = PETSC_FALSE;
7580c7d97c5SJed Brown   PetscErrorCode ierr;
7590c7d97c5SJed Brown 
7600c7d97c5SJed Brown   PetscFunctionBegin;
76156282151SStefano Zampini   ierr = PetscObjectReference((PetscObject)NeumannBoundaries);CHKERRQ(ierr);
76256282151SStefano Zampini   if (pcbddc->NeumannBoundariesLocal) {
76356282151SStefano Zampini     ierr = ISEqual(NeumannBoundaries,pcbddc->NeumannBoundariesLocal,&isequal);CHKERRQ(ierr);
76456282151SStefano Zampini   }
765785d1243SStefano Zampini   /* last user setting takes precendence -> destroy any other customization */
766785d1243SStefano Zampini   ierr = ISDestroy(&pcbddc->NeumannBoundariesLocal);CHKERRQ(ierr);
7670c7d97c5SJed Brown   ierr = ISDestroy(&pcbddc->NeumannBoundaries);CHKERRQ(ierr);
768785d1243SStefano Zampini   pcbddc->NeumannBoundariesLocal = NeumannBoundaries;
76956282151SStefano Zampini   if (!isequal) pcbddc->recompute_topography = PETSC_TRUE;
7700c7d97c5SJed Brown   PetscFunctionReturn(0);
7710c7d97c5SJed Brown }
7720c7d97c5SJed Brown 
7730c7d97c5SJed Brown /*@
77482ba6b80SStefano Zampini  PCBDDCSetNeumannBoundariesLocal - Set IS defining Neumann boundaries for the global problem in local ordering.
7750c7d97c5SJed Brown 
776785d1243SStefano Zampini    Collective
7770c7d97c5SJed Brown 
7780c7d97c5SJed Brown    Input Parameters:
7790c7d97c5SJed Brown +  pc - the preconditioning context
78082ba6b80SStefano Zampini -  NeumannBoundaries - parallel IS defining the subdomain part of Neumann boundaries (in local ordering)
7810c7d97c5SJed Brown 
7820c7d97c5SJed Brown    Level: intermediate
7830c7d97c5SJed Brown 
7840c7d97c5SJed Brown    Notes:
7850c7d97c5SJed Brown 
7860f202f7eSStefano Zampini .seealso: PCBDDC, PCBDDCSetNeumannBoundaries()
7870c7d97c5SJed Brown @*/
78882ba6b80SStefano Zampini PetscErrorCode PCBDDCSetNeumannBoundariesLocal(PC pc,IS NeumannBoundaries)
7890c7d97c5SJed Brown {
7900c7d97c5SJed Brown   PetscErrorCode ierr;
7910c7d97c5SJed Brown 
7920c7d97c5SJed Brown   PetscFunctionBegin;
7930c7d97c5SJed Brown   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
7940c7d97c5SJed Brown   PetscValidHeaderSpecific(NeumannBoundaries,IS_CLASSID,2);
79582ba6b80SStefano Zampini   PetscCheckSameComm(pc,1,NeumannBoundaries,2);
79682ba6b80SStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetNeumannBoundariesLocal_C",(PC,IS),(pc,NeumannBoundaries));CHKERRQ(ierr);
79753cdbc3dSStefano Zampini   PetscFunctionReturn(0);
79853cdbc3dSStefano Zampini }
79953cdbc3dSStefano Zampini 
800da1bb401SStefano Zampini static PetscErrorCode PCBDDCGetDirichletBoundaries_BDDC(PC pc,IS *DirichletBoundaries)
801da1bb401SStefano Zampini {
802da1bb401SStefano Zampini   PC_BDDC  *pcbddc = (PC_BDDC*)pc->data;
803da1bb401SStefano Zampini 
804da1bb401SStefano Zampini   PetscFunctionBegin;
805da1bb401SStefano Zampini   *DirichletBoundaries = pcbddc->DirichletBoundaries;
806da1bb401SStefano Zampini   PetscFunctionReturn(0);
807da1bb401SStefano Zampini }
8081e6b0712SBarry Smith 
809da1bb401SStefano Zampini /*@
810785d1243SStefano Zampini  PCBDDCGetDirichletBoundaries - Get parallel IS for Dirichlet boundaries
811da1bb401SStefano Zampini 
812785d1243SStefano Zampini    Collective
813785d1243SStefano Zampini 
814785d1243SStefano Zampini    Input Parameters:
815785d1243SStefano Zampini .  pc - the preconditioning context
816785d1243SStefano Zampini 
817785d1243SStefano Zampini    Output Parameters:
818785d1243SStefano Zampini .  DirichletBoundaries - index set defining the Dirichlet boundaries
819785d1243SStefano Zampini 
820785d1243SStefano Zampini    Level: intermediate
821785d1243SStefano Zampini 
8220f202f7eSStefano Zampini    Notes:
8230f202f7eSStefano Zampini      The IS returned (if any) is the same passed in earlier by the user with PCBDDCSetDirichletBoundaries
824785d1243SStefano Zampini 
825785d1243SStefano Zampini .seealso: PCBDDC
826785d1243SStefano Zampini @*/
827785d1243SStefano Zampini PetscErrorCode PCBDDCGetDirichletBoundaries(PC pc,IS *DirichletBoundaries)
828785d1243SStefano Zampini {
829785d1243SStefano Zampini   PetscErrorCode ierr;
830785d1243SStefano Zampini 
831785d1243SStefano Zampini   PetscFunctionBegin;
832785d1243SStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
833785d1243SStefano Zampini   ierr = PetscUseMethod(pc,"PCBDDCGetDirichletBoundaries_C",(PC,IS*),(pc,DirichletBoundaries));CHKERRQ(ierr);
834785d1243SStefano Zampini   PetscFunctionReturn(0);
835785d1243SStefano Zampini }
836785d1243SStefano Zampini 
837785d1243SStefano Zampini static PetscErrorCode PCBDDCGetDirichletBoundariesLocal_BDDC(PC pc,IS *DirichletBoundaries)
838785d1243SStefano Zampini {
839785d1243SStefano Zampini   PC_BDDC  *pcbddc = (PC_BDDC*)pc->data;
840785d1243SStefano Zampini 
841785d1243SStefano Zampini   PetscFunctionBegin;
842785d1243SStefano Zampini   *DirichletBoundaries = pcbddc->DirichletBoundariesLocal;
843785d1243SStefano Zampini   PetscFunctionReturn(0);
844785d1243SStefano Zampini }
845785d1243SStefano Zampini 
846da1bb401SStefano Zampini /*@
84782ba6b80SStefano Zampini  PCBDDCGetDirichletBoundariesLocal - Get parallel IS for Dirichlet boundaries (in local ordering)
848da1bb401SStefano Zampini 
849785d1243SStefano Zampini    Collective
850da1bb401SStefano Zampini 
851da1bb401SStefano Zampini    Input Parameters:
85228509bceSStefano Zampini .  pc - the preconditioning context
853da1bb401SStefano Zampini 
854da1bb401SStefano Zampini    Output Parameters:
85528509bceSStefano Zampini .  DirichletBoundaries - index set defining the subdomain part of Dirichlet boundaries
856da1bb401SStefano Zampini 
857da1bb401SStefano Zampini    Level: intermediate
858da1bb401SStefano Zampini 
859da1bb401SStefano Zampini    Notes:
8600f202f7eSStefano Zampini      The IS returned could be the same passed in earlier by the user (if provided with PCBDDCSetDirichletBoundariesLocal) or a global-to-local map of the global IS (if provided with PCBDDCSetDirichletBoundaries).
8610f202f7eSStefano Zampini           In the latter case, the IS will be available after PCSetUp.
862da1bb401SStefano Zampini 
863da1bb401SStefano Zampini .seealso: PCBDDC
864da1bb401SStefano Zampini @*/
86582ba6b80SStefano Zampini PetscErrorCode PCBDDCGetDirichletBoundariesLocal(PC pc,IS *DirichletBoundaries)
866da1bb401SStefano Zampini {
867da1bb401SStefano Zampini   PetscErrorCode ierr;
868da1bb401SStefano Zampini 
869da1bb401SStefano Zampini   PetscFunctionBegin;
870da1bb401SStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
87182ba6b80SStefano Zampini   ierr = PetscUseMethod(pc,"PCBDDCGetDirichletBoundariesLocal_C",(PC,IS*),(pc,DirichletBoundaries));CHKERRQ(ierr);
872da1bb401SStefano Zampini   PetscFunctionReturn(0);
873da1bb401SStefano Zampini }
8741e6b0712SBarry Smith 
87553cdbc3dSStefano Zampini static PetscErrorCode PCBDDCGetNeumannBoundaries_BDDC(PC pc,IS *NeumannBoundaries)
87653cdbc3dSStefano Zampini {
87753cdbc3dSStefano Zampini   PC_BDDC  *pcbddc = (PC_BDDC*)pc->data;
87853cdbc3dSStefano Zampini 
87953cdbc3dSStefano Zampini   PetscFunctionBegin;
88053cdbc3dSStefano Zampini   *NeumannBoundaries = pcbddc->NeumannBoundaries;
88153cdbc3dSStefano Zampini   PetscFunctionReturn(0);
88253cdbc3dSStefano Zampini }
8831e6b0712SBarry Smith 
88453cdbc3dSStefano Zampini /*@
885785d1243SStefano Zampini  PCBDDCGetNeumannBoundaries - Get parallel IS for Neumann boundaries
88653cdbc3dSStefano Zampini 
887785d1243SStefano Zampini    Collective
888785d1243SStefano Zampini 
889785d1243SStefano Zampini    Input Parameters:
890785d1243SStefano Zampini .  pc - the preconditioning context
891785d1243SStefano Zampini 
892785d1243SStefano Zampini    Output Parameters:
893785d1243SStefano Zampini .  NeumannBoundaries - index set defining the Neumann boundaries
894785d1243SStefano Zampini 
895785d1243SStefano Zampini    Level: intermediate
896785d1243SStefano Zampini 
8970f202f7eSStefano Zampini    Notes:
8980f202f7eSStefano Zampini      The IS returned (if any) is the same passed in earlier by the user with PCBDDCSetNeumannBoundaries
899785d1243SStefano Zampini 
900785d1243SStefano Zampini .seealso: PCBDDC
901785d1243SStefano Zampini @*/
902785d1243SStefano Zampini PetscErrorCode PCBDDCGetNeumannBoundaries(PC pc,IS *NeumannBoundaries)
903785d1243SStefano Zampini {
904785d1243SStefano Zampini   PetscErrorCode ierr;
905785d1243SStefano Zampini 
906785d1243SStefano Zampini   PetscFunctionBegin;
907785d1243SStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
908785d1243SStefano Zampini   ierr = PetscUseMethod(pc,"PCBDDCGetNeumannBoundaries_C",(PC,IS*),(pc,NeumannBoundaries));CHKERRQ(ierr);
909785d1243SStefano Zampini   PetscFunctionReturn(0);
910785d1243SStefano Zampini }
911785d1243SStefano Zampini 
912785d1243SStefano Zampini static PetscErrorCode PCBDDCGetNeumannBoundariesLocal_BDDC(PC pc,IS *NeumannBoundaries)
913785d1243SStefano Zampini {
914785d1243SStefano Zampini   PC_BDDC  *pcbddc = (PC_BDDC*)pc->data;
915785d1243SStefano Zampini 
916785d1243SStefano Zampini   PetscFunctionBegin;
917785d1243SStefano Zampini   *NeumannBoundaries = pcbddc->NeumannBoundariesLocal;
918785d1243SStefano Zampini   PetscFunctionReturn(0);
919785d1243SStefano Zampini }
920785d1243SStefano Zampini 
92153cdbc3dSStefano Zampini /*@
92282ba6b80SStefano Zampini  PCBDDCGetNeumannBoundariesLocal - Get parallel IS for Neumann boundaries (in local ordering)
92353cdbc3dSStefano Zampini 
924785d1243SStefano Zampini    Collective
92553cdbc3dSStefano Zampini 
92653cdbc3dSStefano Zampini    Input Parameters:
92728509bceSStefano Zampini .  pc - the preconditioning context
92853cdbc3dSStefano Zampini 
92953cdbc3dSStefano Zampini    Output Parameters:
93028509bceSStefano Zampini .  NeumannBoundaries - index set defining the subdomain part of Neumann boundaries
93153cdbc3dSStefano Zampini 
93253cdbc3dSStefano Zampini    Level: intermediate
93353cdbc3dSStefano Zampini 
93453cdbc3dSStefano Zampini    Notes:
9350f202f7eSStefano Zampini      The IS returned could be the same passed in earlier by the user (if provided with PCBDDCSetNeumannBoundariesLocal) or a global-to-local map of the global IS (if provided with PCBDDCSetNeumannBoundaries).
9360f202f7eSStefano Zampini           In the latter case, the IS will be available after PCSetUp.
93753cdbc3dSStefano Zampini 
93853cdbc3dSStefano Zampini .seealso: PCBDDC
93953cdbc3dSStefano Zampini @*/
94082ba6b80SStefano Zampini PetscErrorCode PCBDDCGetNeumannBoundariesLocal(PC pc,IS *NeumannBoundaries)
94153cdbc3dSStefano Zampini {
94253cdbc3dSStefano Zampini   PetscErrorCode ierr;
94353cdbc3dSStefano Zampini 
94453cdbc3dSStefano Zampini   PetscFunctionBegin;
94553cdbc3dSStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
94682ba6b80SStefano Zampini   ierr = PetscUseMethod(pc,"PCBDDCGetNeumannBoundariesLocal_C",(PC,IS*),(pc,NeumannBoundaries));CHKERRQ(ierr);
9470c7d97c5SJed Brown   PetscFunctionReturn(0);
9480c7d97c5SJed Brown }
9491e6b0712SBarry Smith 
9501a83f524SJed Brown static PetscErrorCode PCBDDCSetLocalAdjacencyGraph_BDDC(PC pc, PetscInt nvtxs,const PetscInt xadj[],const PetscInt adjncy[], PetscCopyMode copymode)
95136e030ebSStefano Zampini {
95236e030ebSStefano Zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
953da1bb401SStefano Zampini   PCBDDCGraph    mat_graph = pcbddc->mat_graph;
95456282151SStefano Zampini   PetscBool      same_data = PETSC_FALSE;
955da1bb401SStefano Zampini   PetscErrorCode ierr;
95636e030ebSStefano Zampini 
95736e030ebSStefano Zampini   PetscFunctionBegin;
9588687889aSStefano Zampini   if (!nvtxs) {
95904194a47SStefano Zampini     if (copymode == PETSC_OWN_POINTER) {
96004194a47SStefano Zampini       ierr = PetscFree(xadj);CHKERRQ(ierr);
96104194a47SStefano Zampini       ierr = PetscFree(adjncy);CHKERRQ(ierr);
96204194a47SStefano Zampini     }
9638687889aSStefano Zampini     ierr = PCBDDCGraphResetCSR(mat_graph);CHKERRQ(ierr);
9648687889aSStefano Zampini     PetscFunctionReturn(0);
9658687889aSStefano Zampini   }
96666da6bd7Sstefano_zampini   if (mat_graph->nvtxs == nvtxs && mat_graph->freecsr) { /* we own the data */
96756282151SStefano Zampini     if (mat_graph->xadj == xadj && mat_graph->adjncy == adjncy) same_data = PETSC_TRUE;
96856282151SStefano Zampini     if (!same_data && mat_graph->xadj[nvtxs] == xadj[nvtxs]) {
9692d505d7fSStefano Zampini       ierr = PetscMemcmp(xadj,mat_graph->xadj,(nvtxs+1)*sizeof(PetscInt),&same_data);CHKERRQ(ierr);
9702d505d7fSStefano Zampini       if (same_data) {
9712d505d7fSStefano Zampini         ierr = PetscMemcmp(adjncy,mat_graph->adjncy,xadj[nvtxs]*sizeof(PetscInt),&same_data);CHKERRQ(ierr);
9722d505d7fSStefano Zampini       }
97356282151SStefano Zampini     }
97456282151SStefano Zampini   }
97556282151SStefano Zampini   if (!same_data) {
976674ae819SStefano Zampini     /* free old CSR */
977674ae819SStefano Zampini     ierr = PCBDDCGraphResetCSR(mat_graph);CHKERRQ(ierr);
978674ae819SStefano Zampini     /* get CSR into graph structure */
979da1bb401SStefano Zampini     if (copymode == PETSC_COPY_VALUES) {
980854ce69bSBarry Smith       ierr = PetscMalloc1(nvtxs+1,&mat_graph->xadj);CHKERRQ(ierr);
981785e854fSJed Brown       ierr = PetscMalloc1(xadj[nvtxs],&mat_graph->adjncy);CHKERRQ(ierr);
982674ae819SStefano Zampini       ierr = PetscMemcpy(mat_graph->xadj,xadj,(nvtxs+1)*sizeof(PetscInt));CHKERRQ(ierr);
983674ae819SStefano Zampini       ierr = PetscMemcpy(mat_graph->adjncy,adjncy,xadj[nvtxs]*sizeof(PetscInt));CHKERRQ(ierr);
984a1dbd327SStefano Zampini       mat_graph->freecsr = PETSC_TRUE;
985da1bb401SStefano Zampini     } else if (copymode == PETSC_OWN_POINTER) {
9861a83f524SJed Brown       mat_graph->xadj    = (PetscInt*)xadj;
9871a83f524SJed Brown       mat_graph->adjncy  = (PetscInt*)adjncy;
988a1dbd327SStefano Zampini       mat_graph->freecsr = PETSC_TRUE;
989a1dbd327SStefano Zampini     } else if (copymode == PETSC_USE_POINTER) {
990a1dbd327SStefano Zampini       mat_graph->xadj    = (PetscInt*)xadj;
991a1dbd327SStefano Zampini       mat_graph->adjncy  = (PetscInt*)adjncy;
992a1dbd327SStefano Zampini       mat_graph->freecsr = PETSC_FALSE;
993e0fe2d75SToby Isaac     } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unsupported copy mode %D",copymode);
994575ad6abSStefano Zampini     mat_graph->nvtxs_csr = nvtxs;
99556282151SStefano Zampini     pcbddc->recompute_topography = PETSC_TRUE;
99656282151SStefano Zampini   }
99736e030ebSStefano Zampini   PetscFunctionReturn(0);
99836e030ebSStefano Zampini }
9991e6b0712SBarry Smith 
100036e030ebSStefano Zampini /*@
100154fffbccSStefano Zampini  PCBDDCSetLocalAdjacencyGraph - Set adjacency structure (CSR graph) of the local degrees of freedom.
100236e030ebSStefano Zampini 
100336e030ebSStefano Zampini    Not collective
100436e030ebSStefano Zampini 
100536e030ebSStefano Zampini    Input Parameters:
100654fffbccSStefano Zampini +  pc - the preconditioning context.
100754fffbccSStefano Zampini .  nvtxs - number of local vertices of the graph (i.e., the number of local dofs).
100854fffbccSStefano Zampini .  xadj, adjncy - the connectivity of the dofs in CSR format.
100954fffbccSStefano Zampini -  copymode - supported modes are PETSC_COPY_VALUES, PETSC_USE_POINTER or PETSC_OWN_POINTER.
101036e030ebSStefano Zampini 
101136e030ebSStefano Zampini    Level: intermediate
101236e030ebSStefano Zampini 
101354fffbccSStefano Zampini    Notes: A dof is considered connected with all local dofs if xadj[dof+1]-xadj[dof] == 1 and adjncy[xadj[dof]] is negative.
101436e030ebSStefano Zampini 
101528509bceSStefano Zampini .seealso: PCBDDC,PetscCopyMode
101636e030ebSStefano Zampini @*/
10171a83f524SJed Brown PetscErrorCode PCBDDCSetLocalAdjacencyGraph(PC pc,PetscInt nvtxs,const PetscInt xadj[],const PetscInt adjncy[], PetscCopyMode copymode)
101836e030ebSStefano Zampini {
1019575ad6abSStefano Zampini   void (*f)(void) = 0;
102036e030ebSStefano Zampini   PetscErrorCode ierr;
102136e030ebSStefano Zampini 
102236e030ebSStefano Zampini   PetscFunctionBegin;
102336e030ebSStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
10248687889aSStefano Zampini   if (nvtxs) {
1025674ae819SStefano Zampini     PetscValidIntPointer(xadj,3);
10261633d1f0SStefano Zampini     if (xadj[nvtxs]) PetscValidIntPointer(adjncy,4);
10278687889aSStefano Zampini   }
10281a83f524SJed Brown   ierr = PetscTryMethod(pc,"PCBDDCSetLocalAdjacencyGraph_C",(PC,PetscInt,const PetscInt[],const PetscInt[],PetscCopyMode),(pc,nvtxs,xadj,adjncy,copymode));CHKERRQ(ierr);
1029575ad6abSStefano Zampini   /* free arrays if PCBDDC is not the PC type */
1030575ad6abSStefano Zampini   ierr = PetscObjectQueryFunction((PetscObject)pc,"PCBDDCSetLocalAdjacencyGraph_C",&f);CHKERRQ(ierr);
1031575ad6abSStefano Zampini   if (!f && copymode == PETSC_OWN_POINTER) {
1032575ad6abSStefano Zampini     ierr = PetscFree(xadj);CHKERRQ(ierr);
1033575ad6abSStefano Zampini     ierr = PetscFree(adjncy);CHKERRQ(ierr);
1034da1bb401SStefano Zampini   }
103536e030ebSStefano Zampini   PetscFunctionReturn(0);
103636e030ebSStefano Zampini }
10371e6b0712SBarry Smith 
103863602bcaSStefano Zampini static PetscErrorCode PCBDDCSetDofsSplittingLocal_BDDC(PC pc,PetscInt n_is, IS ISForDofs[])
103963602bcaSStefano Zampini {
104063602bcaSStefano Zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
104163602bcaSStefano Zampini   PetscInt       i;
104256282151SStefano Zampini   PetscBool      isequal = PETSC_FALSE;
104363602bcaSStefano Zampini   PetscErrorCode ierr;
104463602bcaSStefano Zampini 
104563602bcaSStefano Zampini   PetscFunctionBegin;
104656282151SStefano Zampini   if (pcbddc->n_ISForDofsLocal == n_is) {
104756282151SStefano Zampini     for (i=0;i<n_is;i++) {
104856282151SStefano Zampini       PetscBool isequalt;
104956282151SStefano Zampini       ierr = ISEqual(ISForDofs[i],pcbddc->ISForDofsLocal[i],&isequalt);CHKERRQ(ierr);
105056282151SStefano Zampini       if (!isequalt) break;
105156282151SStefano Zampini     }
105256282151SStefano Zampini     if (i == n_is) isequal = PETSC_TRUE;
105356282151SStefano Zampini   }
105456282151SStefano Zampini   for (i=0;i<n_is;i++) {
105556282151SStefano Zampini     ierr = PetscObjectReference((PetscObject)ISForDofs[i]);CHKERRQ(ierr);
105656282151SStefano Zampini   }
105763602bcaSStefano Zampini   /* Destroy ISes if they were already set */
105863602bcaSStefano Zampini   for (i=0;i<pcbddc->n_ISForDofsLocal;i++) {
105963602bcaSStefano Zampini     ierr = ISDestroy(&pcbddc->ISForDofsLocal[i]);CHKERRQ(ierr);
106063602bcaSStefano Zampini   }
106163602bcaSStefano Zampini   ierr = PetscFree(pcbddc->ISForDofsLocal);CHKERRQ(ierr);
106263602bcaSStefano Zampini   /* last user setting takes precendence -> destroy any other customization */
106363602bcaSStefano Zampini   for (i=0;i<pcbddc->n_ISForDofs;i++) {
106463602bcaSStefano Zampini     ierr = ISDestroy(&pcbddc->ISForDofs[i]);CHKERRQ(ierr);
106563602bcaSStefano Zampini   }
106663602bcaSStefano Zampini   ierr = PetscFree(pcbddc->ISForDofs);CHKERRQ(ierr);
106763602bcaSStefano Zampini   pcbddc->n_ISForDofs = 0;
106863602bcaSStefano Zampini   /* allocate space then set */
1069d02579f5SStefano Zampini   if (n_is) {
1070d02579f5SStefano Zampini     ierr = PetscMalloc1(n_is,&pcbddc->ISForDofsLocal);CHKERRQ(ierr);
1071d02579f5SStefano Zampini   }
107263602bcaSStefano Zampini   for (i=0;i<n_is;i++) {
107363602bcaSStefano Zampini     pcbddc->ISForDofsLocal[i] = ISForDofs[i];
107463602bcaSStefano Zampini   }
107563602bcaSStefano Zampini   pcbddc->n_ISForDofsLocal = n_is;
107663602bcaSStefano Zampini   if (n_is) pcbddc->user_provided_isfordofs = PETSC_TRUE;
107756282151SStefano Zampini   if (!isequal) pcbddc->recompute_topography = PETSC_TRUE;
107863602bcaSStefano Zampini   PetscFunctionReturn(0);
107963602bcaSStefano Zampini }
108063602bcaSStefano Zampini 
108163602bcaSStefano Zampini /*@
108263602bcaSStefano Zampini  PCBDDCSetDofsSplittingLocal - Set index sets defining fields of the local subdomain matrix
108363602bcaSStefano Zampini 
108463602bcaSStefano Zampini    Collective
108563602bcaSStefano Zampini 
108663602bcaSStefano Zampini    Input Parameters:
108763602bcaSStefano Zampini +  pc - the preconditioning context
10880f202f7eSStefano Zampini .  n_is - number of index sets defining the fields
10890f202f7eSStefano Zampini -  ISForDofs - array of IS describing the fields in local ordering
109063602bcaSStefano Zampini 
109163602bcaSStefano Zampini    Level: intermediate
109263602bcaSStefano Zampini 
10930f202f7eSStefano Zampini    Notes:
10940f202f7eSStefano Zampini      n_is should be the same among processes. Not all nodes need to be listed: unlisted nodes will belong to the complement field.
109563602bcaSStefano Zampini 
109663602bcaSStefano Zampini .seealso: PCBDDC
109763602bcaSStefano Zampini @*/
109863602bcaSStefano Zampini PetscErrorCode PCBDDCSetDofsSplittingLocal(PC pc,PetscInt n_is, IS ISForDofs[])
109963602bcaSStefano Zampini {
110063602bcaSStefano Zampini   PetscInt       i;
110163602bcaSStefano Zampini   PetscErrorCode ierr;
110263602bcaSStefano Zampini 
110363602bcaSStefano Zampini   PetscFunctionBegin;
110463602bcaSStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
110563602bcaSStefano Zampini   PetscValidLogicalCollectiveInt(pc,n_is,2);
110663602bcaSStefano Zampini   for (i=0;i<n_is;i++) {
110763602bcaSStefano Zampini     PetscCheckSameComm(pc,1,ISForDofs[i],3);
110863602bcaSStefano Zampini     PetscValidHeaderSpecific(ISForDofs[i],IS_CLASSID,3);
110963602bcaSStefano Zampini   }
1110e71e7a71SStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetDofsSplittingLocal_C",(PC,PetscInt,IS[]),(pc,n_is,ISForDofs));CHKERRQ(ierr);
111163602bcaSStefano Zampini   PetscFunctionReturn(0);
111263602bcaSStefano Zampini }
111363602bcaSStefano Zampini 
11149c0446d6SStefano Zampini static PetscErrorCode PCBDDCSetDofsSplitting_BDDC(PC pc,PetscInt n_is, IS ISForDofs[])
11159c0446d6SStefano Zampini {
11169c0446d6SStefano Zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
11179c0446d6SStefano Zampini   PetscInt       i;
111856282151SStefano Zampini   PetscBool      isequal = PETSC_FALSE;
11199c0446d6SStefano Zampini   PetscErrorCode ierr;
11209c0446d6SStefano Zampini 
11219c0446d6SStefano Zampini   PetscFunctionBegin;
112256282151SStefano Zampini   if (pcbddc->n_ISForDofs == n_is) {
112356282151SStefano Zampini     for (i=0;i<n_is;i++) {
112456282151SStefano Zampini       PetscBool isequalt;
112556282151SStefano Zampini       ierr = ISEqual(ISForDofs[i],pcbddc->ISForDofs[i],&isequalt);CHKERRQ(ierr);
112656282151SStefano Zampini       if (!isequalt) break;
112756282151SStefano Zampini     }
112856282151SStefano Zampini     if (i == n_is) isequal = PETSC_TRUE;
112956282151SStefano Zampini   }
113056282151SStefano Zampini   for (i=0;i<n_is;i++) {
113156282151SStefano Zampini     ierr = PetscObjectReference((PetscObject)ISForDofs[i]);CHKERRQ(ierr);
113256282151SStefano Zampini   }
1133da1bb401SStefano Zampini   /* Destroy ISes if they were already set */
11349c0446d6SStefano Zampini   for (i=0;i<pcbddc->n_ISForDofs;i++) {
11359c0446d6SStefano Zampini     ierr = ISDestroy(&pcbddc->ISForDofs[i]);CHKERRQ(ierr);
11369c0446d6SStefano Zampini   }
1137d11ae9bbSstefano_zampini   ierr = PetscFree(pcbddc->ISForDofs);CHKERRQ(ierr);
113863602bcaSStefano Zampini   /* last user setting takes precendence -> destroy any other customization */
113963602bcaSStefano Zampini   for (i=0;i<pcbddc->n_ISForDofsLocal;i++) {
114063602bcaSStefano Zampini     ierr = ISDestroy(&pcbddc->ISForDofsLocal[i]);CHKERRQ(ierr);
114163602bcaSStefano Zampini   }
114263602bcaSStefano Zampini   ierr = PetscFree(pcbddc->ISForDofsLocal);CHKERRQ(ierr);
114363602bcaSStefano Zampini   pcbddc->n_ISForDofsLocal = 0;
1144da1bb401SStefano Zampini   /* allocate space then set */
1145d02579f5SStefano Zampini   if (n_is) {
1146785e854fSJed Brown     ierr = PetscMalloc1(n_is,&pcbddc->ISForDofs);CHKERRQ(ierr);
1147d02579f5SStefano Zampini   }
11489c0446d6SStefano Zampini   for (i=0;i<n_is;i++) {
1149da1bb401SStefano Zampini     pcbddc->ISForDofs[i] = ISForDofs[i];
11509c0446d6SStefano Zampini   }
11519c0446d6SStefano Zampini   pcbddc->n_ISForDofs = n_is;
115263602bcaSStefano Zampini   if (n_is) pcbddc->user_provided_isfordofs = PETSC_TRUE;
115356282151SStefano Zampini   if (!isequal) pcbddc->recompute_topography = PETSC_TRUE;
11549c0446d6SStefano Zampini   PetscFunctionReturn(0);
11559c0446d6SStefano Zampini }
11561e6b0712SBarry Smith 
11579c0446d6SStefano Zampini /*@
115863602bcaSStefano Zampini  PCBDDCSetDofsSplitting - Set index sets defining fields of the global matrix
11599c0446d6SStefano Zampini 
116063602bcaSStefano Zampini    Collective
11619c0446d6SStefano Zampini 
11629c0446d6SStefano Zampini    Input Parameters:
11639c0446d6SStefano Zampini +  pc - the preconditioning context
11640f202f7eSStefano Zampini .  n_is - number of index sets defining the fields
11650f202f7eSStefano Zampini -  ISForDofs - array of IS describing the fields in global ordering
11669c0446d6SStefano Zampini 
11679c0446d6SStefano Zampini    Level: intermediate
11689c0446d6SStefano Zampini 
11690f202f7eSStefano Zampini    Notes:
11700f202f7eSStefano Zampini      Any process can list any global node. Not all nodes need to be listed: unlisted nodes will belong to the complement field.
11719c0446d6SStefano Zampini 
11729c0446d6SStefano Zampini .seealso: PCBDDC
11739c0446d6SStefano Zampini @*/
11749c0446d6SStefano Zampini PetscErrorCode PCBDDCSetDofsSplitting(PC pc,PetscInt n_is, IS ISForDofs[])
11759c0446d6SStefano Zampini {
11762b510759SStefano Zampini   PetscInt       i;
11779c0446d6SStefano Zampini   PetscErrorCode ierr;
11789c0446d6SStefano Zampini 
11799c0446d6SStefano Zampini   PetscFunctionBegin;
11809c0446d6SStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
118163602bcaSStefano Zampini   PetscValidLogicalCollectiveInt(pc,n_is,2);
11822b510759SStefano Zampini   for (i=0;i<n_is;i++) {
118363602bcaSStefano Zampini     PetscValidHeaderSpecific(ISForDofs[i],IS_CLASSID,3);
1184a011d5a7Sstefano_zampini     PetscCheckSameComm(pc,1,ISForDofs[i],3);
11852b510759SStefano Zampini   }
11869c0446d6SStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetDofsSplitting_C",(PC,PetscInt,IS[]),(pc,n_is,ISForDofs));CHKERRQ(ierr);
11879c0446d6SStefano Zampini   PetscFunctionReturn(0);
11889c0446d6SStefano Zampini }
1189906d46d4SStefano Zampini 
1190534831adSStefano Zampini /*
1191534831adSStefano Zampini    PCPreSolve_BDDC - Changes the right hand side and (if necessary) the initial
1192534831adSStefano Zampini                      guess if a transformation of basis approach has been selected.
11939c0446d6SStefano Zampini 
1194534831adSStefano Zampini    Input Parameter:
1195534831adSStefano Zampini +  pc - the preconditioner contex
1196534831adSStefano Zampini 
1197534831adSStefano Zampini    Application Interface Routine: PCPreSolve()
1198534831adSStefano Zampini 
1199534831adSStefano Zampini    Notes:
1200534831adSStefano Zampini      The interface routine PCPreSolve() is not usually called directly by
1201534831adSStefano Zampini    the user, but instead is called by KSPSolve().
1202534831adSStefano Zampini */
1203534831adSStefano Zampini static PetscErrorCode PCPreSolve_BDDC(PC pc, KSP ksp, Vec rhs, Vec x)
1204534831adSStefano Zampini {
1205534831adSStefano Zampini   PetscErrorCode ierr;
1206534831adSStefano Zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
1207534831adSStefano Zampini   PC_IS          *pcis = (PC_IS*)(pc->data);
12083972b0daSStefano Zampini   Vec            used_vec;
120927b6a85dSStefano Zampini   PetscBool      save_rhs = PETSC_TRUE, benign_correction_computed;
1210534831adSStefano Zampini 
1211534831adSStefano Zampini   PetscFunctionBegin;
12121f4df5f7SStefano Zampini   /* if we are working with CG, one dirichlet solve can be avoided during Krylov iterations */
121385c4d303SStefano Zampini   if (ksp) {
12141f4df5f7SStefano Zampini     PetscBool iscg, isgroppcg, ispipecg, ispipecgrr;
121585c4d303SStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)ksp,KSPCG,&iscg);CHKERRQ(ierr);
121627b6a85dSStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)ksp,KSPGROPPCG,&isgroppcg);CHKERRQ(ierr);
121727b6a85dSStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)ksp,KSPPIPECG,&ispipecg);CHKERRQ(ierr);
1218f94e96cbSStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)ksp,KSPPIPECGRR,&ispipecgrr);CHKERRQ(ierr);
12191f4df5f7SStefano Zampini     if (pcbddc->benign_apply_coarse_only || pcbddc->switch_static || (!iscg && !isgroppcg && !ispipecg && !ispipecgrr)) {
122085c4d303SStefano Zampini       ierr = PCBDDCSetUseExactDirichlet(pc,PETSC_FALSE);CHKERRQ(ierr);
122185c4d303SStefano Zampini     }
122285c4d303SStefano Zampini   }
1223fc17d649SStefano Zampini   if (pcbddc->benign_apply_coarse_only || pcbddc->switch_static) {
1224fc17d649SStefano Zampini     ierr = PCBDDCSetUseExactDirichlet(pc,PETSC_FALSE);CHKERRQ(ierr);
1225fc17d649SStefano Zampini   }
12261f4df5f7SStefano Zampini 
122785c4d303SStefano Zampini   /* Creates parallel work vectors used in presolve */
122862a6ff1dSStefano Zampini   if (!pcbddc->original_rhs) {
122962a6ff1dSStefano Zampini     ierr = VecDuplicate(pcis->vec1_global,&pcbddc->original_rhs);CHKERRQ(ierr);
123062a6ff1dSStefano Zampini   }
123162a6ff1dSStefano Zampini   if (!pcbddc->temp_solution) {
123262a6ff1dSStefano Zampini     ierr = VecDuplicate(pcis->vec1_global,&pcbddc->temp_solution);CHKERRQ(ierr);
123362a6ff1dSStefano Zampini   }
12348d00608fSStefano Zampini 
123527b6a85dSStefano Zampini   pcbddc->temp_solution_used = PETSC_FALSE;
12363972b0daSStefano Zampini   if (x) {
12373972b0daSStefano Zampini     ierr = PetscObjectReference((PetscObject)x);CHKERRQ(ierr);
12383972b0daSStefano Zampini     used_vec = x;
12398d00608fSStefano Zampini   } else { /* it can only happen when calling PCBDDCMatFETIDPGetRHS */
12403972b0daSStefano Zampini     ierr = PetscObjectReference((PetscObject)pcbddc->temp_solution);CHKERRQ(ierr);
12413972b0daSStefano Zampini     used_vec = pcbddc->temp_solution;
12423972b0daSStefano Zampini     ierr = VecSet(used_vec,0.0);CHKERRQ(ierr);
124327b6a85dSStefano Zampini     pcbddc->temp_solution_used = PETSC_TRUE;
1244266e20e9SStefano Zampini     ierr = VecCopy(rhs,pcbddc->original_rhs);CHKERRQ(ierr);
1245266e20e9SStefano Zampini     save_rhs = PETSC_FALSE;
1246266e20e9SStefano Zampini     pcbddc->eliminate_dirdofs = PETSC_TRUE;
12473972b0daSStefano Zampini   }
12488efcfb23SStefano Zampini 
12498efcfb23SStefano Zampini   /* hack into ksp data structure since PCPreSolve comes earlier than setting to zero the guess in src/ksp/ksp/interface/itfunc.c */
12503972b0daSStefano Zampini   if (ksp) {
1251a0cb1b98SStefano Zampini     /* store the flag for the initial guess since it will be restored back during PCPostSolve_BDDC */
12528efcfb23SStefano Zampini     ierr = KSPGetInitialGuessNonzero(ksp,&pcbddc->ksp_guess_nonzero);CHKERRQ(ierr);
12538efcfb23SStefano Zampini     if (!pcbddc->ksp_guess_nonzero) {
12543972b0daSStefano Zampini       ierr = VecSet(used_vec,0.0);CHKERRQ(ierr);
12553972b0daSStefano Zampini     }
12563972b0daSStefano Zampini   }
12573308cffdSStefano Zampini 
12588d00608fSStefano Zampini   pcbddc->rhs_change = PETSC_FALSE;
12593972b0daSStefano Zampini   /* Take into account zeroed rows -> change rhs and store solution removed */
126070c64980SStefano Zampini   if (rhs && pcbddc->eliminate_dirdofs) {
12613975b054SStefano Zampini     IS dirIS = NULL;
12623975b054SStefano Zampini 
1263a07ea27aSStefano Zampini     /* DirichletBoundariesLocal may not be consistent among neighbours; gets a dirichlet dofs IS from graph (may be cached) */
12643975b054SStefano Zampini     ierr = PCBDDCGraphGetDirichletDofs(pcbddc->mat_graph,&dirIS);CHKERRQ(ierr);
12653975b054SStefano Zampini     if (dirIS) {
1266906d46d4SStefano Zampini       Mat_IS            *matis = (Mat_IS*)pc->pmat->data;
1267785d1243SStefano Zampini       PetscInt          dirsize,i,*is_indices;
12682b095fd8SStefano Zampini       PetscScalar       *array_x;
12692b095fd8SStefano Zampini       const PetscScalar *array_diagonal;
1270785d1243SStefano Zampini 
12713972b0daSStefano Zampini       ierr = MatGetDiagonal(pc->pmat,pcis->vec1_global);CHKERRQ(ierr);
12723972b0daSStefano Zampini       ierr = VecPointwiseDivide(pcis->vec1_global,rhs,pcis->vec1_global);CHKERRQ(ierr);
1273e176bc59SStefano Zampini       ierr = VecScatterBegin(matis->rctx,pcis->vec1_global,pcis->vec2_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1274e176bc59SStefano Zampini       ierr = VecScatterEnd(matis->rctx,pcis->vec1_global,pcis->vec2_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1275e176bc59SStefano Zampini       ierr = VecScatterBegin(matis->rctx,used_vec,pcis->vec1_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1276e176bc59SStefano Zampini       ierr = VecScatterEnd(matis->rctx,used_vec,pcis->vec1_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
127782ba6b80SStefano Zampini       ierr = ISGetLocalSize(dirIS,&dirsize);CHKERRQ(ierr);
12783972b0daSStefano Zampini       ierr = VecGetArray(pcis->vec1_N,&array_x);CHKERRQ(ierr);
12792b095fd8SStefano Zampini       ierr = VecGetArrayRead(pcis->vec2_N,&array_diagonal);CHKERRQ(ierr);
12803972b0daSStefano Zampini       ierr = ISGetIndices(dirIS,(const PetscInt**)&is_indices);CHKERRQ(ierr);
12812fa5cd67SKarl Rupp       for (i=0; i<dirsize; i++) array_x[is_indices[i]] = array_diagonal[is_indices[i]];
12823972b0daSStefano Zampini       ierr = ISRestoreIndices(dirIS,(const PetscInt**)&is_indices);CHKERRQ(ierr);
12832b095fd8SStefano Zampini       ierr = VecRestoreArrayRead(pcis->vec2_N,&array_diagonal);CHKERRQ(ierr);
12843972b0daSStefano Zampini       ierr = VecRestoreArray(pcis->vec1_N,&array_x);CHKERRQ(ierr);
1285e176bc59SStefano Zampini       ierr = VecScatterBegin(matis->rctx,pcis->vec1_N,used_vec,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1286e176bc59SStefano Zampini       ierr = VecScatterEnd(matis->rctx,pcis->vec1_N,used_vec,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
12878d00608fSStefano Zampini       pcbddc->rhs_change = PETSC_TRUE;
12881b968477SStefano Zampini       ierr = ISDestroy(&dirIS);CHKERRQ(ierr);
12898efcfb23SStefano Zampini     }
1290a07ea27aSStefano Zampini   }
1291b76ba322SStefano Zampini 
12928efcfb23SStefano Zampini   /* remove the computed solution or the initial guess from the rhs */
12938d00608fSStefano Zampini   if (pcbddc->rhs_change || (ksp && pcbddc->ksp_guess_nonzero) ) {
129427b6a85dSStefano Zampini     /* save the original rhs */
129527b6a85dSStefano Zampini     if (save_rhs) {
129627b6a85dSStefano Zampini       ierr = VecSwap(rhs,pcbddc->original_rhs);CHKERRQ(ierr);
129727b6a85dSStefano Zampini       save_rhs = PETSC_FALSE;
12988d00608fSStefano Zampini     }
12998d00608fSStefano Zampini     pcbddc->rhs_change = PETSC_TRUE;
13003972b0daSStefano Zampini     ierr = VecScale(used_vec,-1.0);CHKERRQ(ierr);
130127b6a85dSStefano Zampini     ierr = MatMultAdd(pc->mat,used_vec,pcbddc->original_rhs,rhs);CHKERRQ(ierr);
13023972b0daSStefano Zampini     ierr = VecScale(used_vec,-1.0);CHKERRQ(ierr);
13038efcfb23SStefano Zampini     ierr = VecCopy(used_vec,pcbddc->temp_solution);CHKERRQ(ierr);
130427b6a85dSStefano Zampini     pcbddc->temp_solution_used = PETSC_TRUE;
13057acc28cbSStefano Zampini     if (ksp) {
13067acc28cbSStefano Zampini       ierr = KSPSetInitialGuessNonzero(ksp,PETSC_FALSE);CHKERRQ(ierr);
13077acc28cbSStefano Zampini     }
13083308cffdSStefano Zampini   }
13098efcfb23SStefano Zampini   ierr = VecDestroy(&used_vec);CHKERRQ(ierr);
1310b76ba322SStefano Zampini 
1311fc17d649SStefano Zampini   /* compute initial vector in benign space if needed
131227b6a85dSStefano Zampini      and remove non-benign solution from the rhs */
131327b6a85dSStefano Zampini   benign_correction_computed = PETSC_FALSE;
1314c69e9cc1SStefano Zampini   if (rhs && pcbddc->benign_compute_correction && (pcbddc->benign_have_null || pcbddc->benign_apply_coarse_only)) {
13151f4df5f7SStefano Zampini     /* compute u^*_h using ideas similar to those in Xuemin Tu's PhD thesis (see Section 4.8.1)
13161f4df5f7SStefano Zampini        Recursively apply BDDC in the multilevel case */
13170369aaf7SStefano Zampini     if (!pcbddc->benign_vec) {
13180369aaf7SStefano Zampini       ierr = VecDuplicate(rhs,&pcbddc->benign_vec);CHKERRQ(ierr);
13190369aaf7SStefano Zampini     }
1320c69e9cc1SStefano Zampini     /* keep applying coarse solver unless we no longer have benign subdomains */
1321c69e9cc1SStefano Zampini     pcbddc->benign_apply_coarse_only = pcbddc->benign_have_null ? PETSC_TRUE : PETSC_FALSE;
132227b6a85dSStefano Zampini     if (!pcbddc->benign_skip_correction) {
13231dd7afcfSStefano Zampini       ierr = PCApply_BDDC(pc,rhs,pcbddc->benign_vec);CHKERRQ(ierr);
13243bca92a6SStefano Zampini       benign_correction_computed = PETSC_TRUE;
13251f4df5f7SStefano Zampini       if (pcbddc->temp_solution_used) {
13261f4df5f7SStefano Zampini         ierr = VecAXPY(pcbddc->temp_solution,1.0,pcbddc->benign_vec);CHKERRQ(ierr);
13271f4df5f7SStefano Zampini       }
13281f4df5f7SStefano Zampini       ierr = VecScale(pcbddc->benign_vec,-1.0);CHKERRQ(ierr);
132927b6a85dSStefano Zampini       /* store the original rhs if not done earlier */
133027b6a85dSStefano Zampini       if (save_rhs) {
133127b6a85dSStefano Zampini         ierr = VecSwap(rhs,pcbddc->original_rhs);CHKERRQ(ierr);
133292e3dcfbSStefano Zampini       }
133327b6a85dSStefano Zampini       if (pcbddc->rhs_change) {
13340369aaf7SStefano Zampini         ierr = MatMultAdd(pc->mat,pcbddc->benign_vec,rhs,rhs);CHKERRQ(ierr);
133527b6a85dSStefano Zampini       } else {
133627b6a85dSStefano Zampini         ierr = MatMultAdd(pc->mat,pcbddc->benign_vec,pcbddc->original_rhs,rhs);CHKERRQ(ierr);
133727b6a85dSStefano Zampini       }
13380369aaf7SStefano Zampini       pcbddc->rhs_change = PETSC_TRUE;
133927b6a85dSStefano Zampini     }
134027b6a85dSStefano Zampini     pcbddc->benign_apply_coarse_only = PETSC_FALSE;
13410369aaf7SStefano Zampini   }
13422d4c4fecSStefano Zampini 
13432d4c4fecSStefano Zampini   /* dbg output */
1344a198735bSStefano Zampini   if (pcbddc->dbg_flag && benign_correction_computed) {
13451f4df5f7SStefano Zampini     Vec v;
1346c69e9cc1SStefano Zampini 
13471f4df5f7SStefano Zampini     ierr = VecDuplicate(pcis->vec1_global,&v);CHKERRQ(ierr);
1348c69e9cc1SStefano Zampini     if (pcbddc->ChangeOfBasisMatrix) {
13491f4df5f7SStefano Zampini       ierr = MatMultTranspose(pcbddc->ChangeOfBasisMatrix,rhs,v);CHKERRQ(ierr);
1350c69e9cc1SStefano Zampini     } else {
1351c69e9cc1SStefano Zampini       ierr = VecCopy(rhs,v);CHKERRQ(ierr);
1352c69e9cc1SStefano Zampini     }
13531f4df5f7SStefano Zampini     ierr = PCBDDCBenignGetOrSetP0(pc,v,PETSC_TRUE);CHKERRQ(ierr);
1354e0fe2d75SToby Isaac     ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"LEVEL %D: is the correction benign?\n",pcbddc->current_level);CHKERRQ(ierr);
1355c69e9cc1SStefano Zampini     ierr = PetscScalarView(pcbddc->benign_n,pcbddc->benign_p0,pcbddc->dbg_viewer);CHKERRQ(ierr);
1356c69e9cc1SStefano Zampini     ierr = PetscViewerFlush(pcbddc->dbg_viewer);CHKERRQ(ierr);
13571f4df5f7SStefano Zampini     ierr = VecDestroy(&v);CHKERRQ(ierr);
13581f4df5f7SStefano Zampini   }
13590369aaf7SStefano Zampini 
13600369aaf7SStefano Zampini   /* set initial guess if using PCG */
13618ae0ca82SStefano Zampini   pcbddc->exact_dirichlet_trick_app = PETSC_FALSE;
13620369aaf7SStefano Zampini   if (x && pcbddc->use_exact_dirichlet_trick) {
13630369aaf7SStefano Zampini     ierr = VecSet(x,0.0);CHKERRQ(ierr);
13641dd7afcfSStefano Zampini     if (pcbddc->ChangeOfBasisMatrix && pcbddc->change_interior) {
136527b6a85dSStefano Zampini       if (benign_correction_computed) { /* we have already saved the changed rhs */
13661dd7afcfSStefano Zampini         ierr = VecLockPop(pcis->vec1_global);CHKERRQ(ierr);
13671dd7afcfSStefano Zampini       } else {
13681dd7afcfSStefano Zampini         ierr = MatMultTranspose(pcbddc->ChangeOfBasisMatrix,rhs,pcis->vec1_global);CHKERRQ(ierr);
13691dd7afcfSStefano Zampini       }
13701dd7afcfSStefano Zampini       ierr = VecScatterBegin(pcis->global_to_D,pcis->vec1_global,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
13711dd7afcfSStefano Zampini       ierr = VecScatterEnd(pcis->global_to_D,pcis->vec1_global,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
13721dd7afcfSStefano Zampini     } else {
13730369aaf7SStefano Zampini       ierr = VecScatterBegin(pcis->global_to_D,rhs,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
13740369aaf7SStefano Zampini       ierr = VecScatterEnd(pcis->global_to_D,rhs,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
13751dd7afcfSStefano Zampini     }
13760369aaf7SStefano Zampini     ierr = KSPSolve(pcbddc->ksp_D,pcis->vec1_D,pcis->vec2_D);CHKERRQ(ierr);
13771dd7afcfSStefano Zampini     if (pcbddc->ChangeOfBasisMatrix && pcbddc->change_interior) {
13781dd7afcfSStefano Zampini       ierr = VecSet(pcis->vec1_global,0.);CHKERRQ(ierr);
13791dd7afcfSStefano Zampini       ierr = VecScatterBegin(pcis->global_to_D,pcis->vec2_D,pcis->vec1_global,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
13801dd7afcfSStefano Zampini       ierr = VecScatterEnd(pcis->global_to_D,pcis->vec2_D,pcis->vec1_global,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
13811dd7afcfSStefano Zampini       ierr = MatMult(pcbddc->ChangeOfBasisMatrix,pcis->vec1_global,x);CHKERRQ(ierr);
13821dd7afcfSStefano Zampini     } else {
13830369aaf7SStefano Zampini       ierr = VecScatterBegin(pcis->global_to_D,pcis->vec2_D,x,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
13840369aaf7SStefano Zampini       ierr = VecScatterEnd(pcis->global_to_D,pcis->vec2_D,x,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
13851dd7afcfSStefano Zampini     }
13860369aaf7SStefano Zampini     if (ksp) {
13870369aaf7SStefano Zampini       ierr = KSPSetInitialGuessNonzero(ksp,PETSC_TRUE);CHKERRQ(ierr);
13880369aaf7SStefano Zampini     }
13898ae0ca82SStefano Zampini     pcbddc->exact_dirichlet_trick_app = PETSC_TRUE;
1390266e20e9SStefano Zampini   } else if (pcbddc->ChangeOfBasisMatrix && pcbddc->change_interior && benign_correction_computed && pcbddc->use_exact_dirichlet_trick) {
1391266e20e9SStefano Zampini     ierr = VecLockPop(pcis->vec1_global);CHKERRQ(ierr);
13920369aaf7SStefano Zampini   }
1393534831adSStefano Zampini   PetscFunctionReturn(0);
1394534831adSStefano Zampini }
1395906d46d4SStefano Zampini 
1396534831adSStefano Zampini /*
1397534831adSStefano Zampini    PCPostSolve_BDDC - Changes the computed solution if a transformation of basis
1398534831adSStefano Zampini                      approach has been selected. Also, restores rhs to its original state.
1399534831adSStefano Zampini 
1400534831adSStefano Zampini    Input Parameter:
1401534831adSStefano Zampini +  pc - the preconditioner contex
1402534831adSStefano Zampini 
1403534831adSStefano Zampini    Application Interface Routine: PCPostSolve()
1404534831adSStefano Zampini 
1405534831adSStefano Zampini    Notes:
1406534831adSStefano Zampini      The interface routine PCPostSolve() is not usually called directly by
1407534831adSStefano Zampini      the user, but instead is called by KSPSolve().
1408534831adSStefano Zampini */
1409534831adSStefano Zampini static PetscErrorCode PCPostSolve_BDDC(PC pc, KSP ksp, Vec rhs, Vec x)
1410534831adSStefano Zampini {
1411534831adSStefano Zampini   PetscErrorCode ierr;
1412534831adSStefano Zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
1413534831adSStefano Zampini 
1414534831adSStefano Zampini   PetscFunctionBegin;
14153972b0daSStefano Zampini   /* add solution removed in presolve */
14166bcfc461SStefano Zampini   if (x && pcbddc->rhs_change) {
141727b6a85dSStefano Zampini     if (pcbddc->temp_solution_used) {
14183425bc38SStefano Zampini       ierr = VecAXPY(x,1.0,pcbddc->temp_solution);CHKERRQ(ierr);
1419af140850Sstefano_zampini     } else if (pcbddc->benign_compute_correction && pcbddc->benign_vec) {
142027b6a85dSStefano Zampini       ierr = VecAXPY(x,-1.0,pcbddc->benign_vec);CHKERRQ(ierr);
14213425bc38SStefano Zampini     }
1422af140850Sstefano_zampini     /* restore to original state (not for FETI-DP) */
1423af140850Sstefano_zampini     if (ksp) pcbddc->temp_solution_used = PETSC_FALSE;
142427b6a85dSStefano Zampini   }
142527b6a85dSStefano Zampini 
1426266e20e9SStefano Zampini   /* restore rhs to its original state (not needed for FETI-DP) */
14278d00608fSStefano Zampini   if (rhs && pcbddc->rhs_change) {
142827b6a85dSStefano Zampini     ierr = VecSwap(rhs,pcbddc->original_rhs);CHKERRQ(ierr);
14298d00608fSStefano Zampini     pcbddc->rhs_change = PETSC_FALSE;
1430af140850Sstefano_zampini   }
14318efcfb23SStefano Zampini   /* restore ksp guess state */
14328efcfb23SStefano Zampini   if (ksp) {
14338efcfb23SStefano Zampini     ierr = KSPSetInitialGuessNonzero(ksp,pcbddc->ksp_guess_nonzero);CHKERRQ(ierr);
14348ae0ca82SStefano Zampini     /* reset flag for exact dirichlet trick */
14358ae0ca82SStefano Zampini     pcbddc->exact_dirichlet_trick_app = PETSC_FALSE;
1436af140850Sstefano_zampini   }
1437534831adSStefano Zampini   PetscFunctionReturn(0);
1438534831adSStefano Zampini }
1439af140850Sstefano_zampini 
14400c7d97c5SJed Brown /*
14410c7d97c5SJed Brown    PCSetUp_BDDC - Prepares for the use of the BDDC preconditioner
14420c7d97c5SJed Brown                   by setting data structures and options.
14430c7d97c5SJed Brown 
14440c7d97c5SJed Brown    Input Parameter:
144553cdbc3dSStefano Zampini +  pc - the preconditioner context
14460c7d97c5SJed Brown 
14470c7d97c5SJed Brown    Application Interface Routine: PCSetUp()
14480c7d97c5SJed Brown 
14490c7d97c5SJed Brown    Notes:
14500c7d97c5SJed Brown      The interface routine PCSetUp() is not usually called directly by
14510c7d97c5SJed Brown      the user, but instead is called by PCApply() if necessary.
14520c7d97c5SJed Brown */
145353cdbc3dSStefano Zampini PetscErrorCode PCSetUp_BDDC(PC pc)
14540c7d97c5SJed Brown {
14550c7d97c5SJed Brown   PC_BDDC*        pcbddc = (PC_BDDC*)pc->data;
1456c703fcc7SStefano Zampini   PCBDDCSubSchurs sub_schurs;
14575e8657edSStefano Zampini   Mat_IS*         matis;
145808122e43SStefano Zampini   MatNullSpace    nearnullspace;
145935509ce9Sstefano_zampini   Mat             lA;
146035509ce9Sstefano_zampini   IS              lP,zerodiag = NULL;
146191e8d312SStefano Zampini   PetscInt        nrows,ncols;
1462*86bfa4cfSStefano Zampini   PetscMPIInt     size;
1463c703fcc7SStefano Zampini   PetscBool       computesubschurs;
14648de1fae6SStefano Zampini   PetscBool       computeconstraintsmatrix;
14655e8657edSStefano Zampini   PetscBool       new_nearnullspace_provided,ismatis;
1466c703fcc7SStefano Zampini   PetscErrorCode  ierr;
14670c7d97c5SJed Brown 
14680c7d97c5SJed Brown   PetscFunctionBegin;
14695e8657edSStefano Zampini   ierr = PetscObjectTypeCompare((PetscObject)pc->pmat,MATIS,&ismatis);CHKERRQ(ierr);
14706c4ed002SBarry Smith   if (!ismatis) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_ARG_WRONG,"PCBDDC preconditioner requires matrix of type MATIS");
147191e8d312SStefano Zampini   ierr = MatGetSize(pc->pmat,&nrows,&ncols);CHKERRQ(ierr);
14726c4ed002SBarry Smith   if (nrows != ncols) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"PCBDDC preconditioner requires a square preconditioning matrix");
1473*86bfa4cfSStefano Zampini   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)pc),&size);CHKERRQ(ierr);
1474*86bfa4cfSStefano Zampini 
14755e8657edSStefano Zampini   matis = (Mat_IS*)pc->pmat->data;
1476f4ddd8eeSStefano Zampini   /* the following lines of code should be replaced by a better logic between PCIS, PCNN, PCBDDC and other future nonoverlapping preconditioners */
14773b03a366Sstefano_zampini   /* For BDDC we need to define a local "Neumann" problem different to that defined in PCISSetup
147871582508SStefano Zampini      Also, BDDC builds its own KSP for the Dirichlet problem */
1479a485753aSstefano_zampini   if (!pc->setupcalled || pc->flag == DIFFERENT_NONZERO_PATTERN) pcbddc->recompute_topography = PETSC_TRUE;
1480c83e1ba7SStefano Zampini   if (pcbddc->recompute_topography) {
1481c83e1ba7SStefano Zampini     pcbddc->graphanalyzed    = PETSC_FALSE;
1482c83e1ba7SStefano Zampini     computeconstraintsmatrix = PETSC_TRUE;
1483c83e1ba7SStefano Zampini   } else {
14848de1fae6SStefano Zampini     computeconstraintsmatrix = PETSC_FALSE;
1485c83e1ba7SStefano Zampini   }
1486b087196eSStefano Zampini 
1487b087196eSStefano Zampini   /* check parameters' compatibility */
1488b7ab4a40SStefano Zampini   if (!pcbddc->use_deluxe_scaling) pcbddc->deluxe_zerorows = PETSC_FALSE;
1489bd2a564bSStefano Zampini   pcbddc->adaptive_selection   = (PetscBool)(pcbddc->adaptive_threshold[0] != 0.0 || pcbddc->adaptive_threshold[1] != 0.0);
1490*86bfa4cfSStefano Zampini   pcbddc->use_deluxe_scaling   = (PetscBool)(pcbddc->use_deluxe_scaling && size > 1);
1491*86bfa4cfSStefano Zampini   pcbddc->adaptive_selection   = (PetscBool)(pcbddc->adaptive_selection && size > 1);
1492bf3a8328SStefano Zampini   pcbddc->adaptive_userdefined = (PetscBool)(pcbddc->adaptive_selection && pcbddc->adaptive_userdefined);
1493862806e4SStefano Zampini   if (pcbddc->adaptive_selection) pcbddc->use_faces = PETSC_TRUE;
1494862806e4SStefano Zampini 
14955a95e1ceSStefano Zampini   computesubschurs = (PetscBool)(pcbddc->adaptive_selection || pcbddc->use_deluxe_scaling);
149616909a7fSStefano Zampini   if (pcbddc->switch_static) {
149716909a7fSStefano Zampini     PetscBool ismatis;
149816909a7fSStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)pc->mat,MATIS,&ismatis);CHKERRQ(ierr);
149916909a7fSStefano Zampini     if (!ismatis) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"When the static switch is one, the iteration matrix should be of type MATIS");
150016909a7fSStefano Zampini   }
150116909a7fSStefano Zampini 
150271582508SStefano Zampini   /* activate all connected components if the netflux has been requested */
1503bb05f991SStefano Zampini   if (pcbddc->compute_nonetflux) {
1504bb05f991SStefano Zampini     pcbddc->use_vertices = PETSC_TRUE;
1505bb05f991SStefano Zampini     pcbddc->use_edges = PETSC_TRUE;
1506bb05f991SStefano Zampini     pcbddc->use_faces = PETSC_TRUE;
1507bb05f991SStefano Zampini   }
1508bb05f991SStefano Zampini 
1509f4ddd8eeSStefano Zampini   /* Get stdout for dbg */
151070cf5478SStefano Zampini   if (pcbddc->dbg_flag) {
151170cf5478SStefano Zampini     if (!pcbddc->dbg_viewer) {
151258a03d70SStefano Zampini       pcbddc->dbg_viewer = PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)pc));
15131575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(pcbddc->dbg_viewer);CHKERRQ(ierr);
1514f4ddd8eeSStefano Zampini     }
151558a03d70SStefano Zampini     ierr = PetscViewerASCIIAddTab(pcbddc->dbg_viewer,2*pcbddc->current_level);CHKERRQ(ierr);
1516f4ddd8eeSStefano Zampini   }
1517f4ddd8eeSStefano Zampini 
1518c703fcc7SStefano Zampini   /* process topology information */
151971582508SStefano Zampini   if (pcbddc->recompute_topography) {
152071582508SStefano Zampini     ierr = PCBDDCComputeLocalTopologyInfo(pc);CHKERRQ(ierr);
1521c703fcc7SStefano Zampini     if (pcbddc->discretegradient) {
1522a13144ffSStefano Zampini       ierr = PCBDDCNedelecSupport(pc);CHKERRQ(ierr);
1523a13144ffSStefano Zampini     }
1524c703fcc7SStefano Zampini   }
1525a13144ffSStefano Zampini 
1526c703fcc7SStefano Zampini   /* change basis if requested by the user */
15275e8657edSStefano Zampini   if (pcbddc->user_ChangeOfBasisMatrix) {
15285e8657edSStefano Zampini     /* use_change_of_basis flag is used to automatically compute a change of basis from constraints */
15295e8657edSStefano Zampini     pcbddc->use_change_of_basis = PETSC_FALSE;
15305e8657edSStefano Zampini     ierr = PCBDDCComputeLocalMatrix(pc,pcbddc->user_ChangeOfBasisMatrix);CHKERRQ(ierr);
15315e8657edSStefano Zampini   } else {
1532b96c3477SStefano Zampini     ierr = MatDestroy(&pcbddc->local_mat);CHKERRQ(ierr);
15335e8657edSStefano Zampini     ierr = PetscObjectReference((PetscObject)matis->A);CHKERRQ(ierr);
15345e8657edSStefano Zampini     pcbddc->local_mat = matis->A;
1535d16cbb6bSStefano Zampini   }
1536d16cbb6bSStefano Zampini 
15374f1b2e48SStefano Zampini   /*
1538c703fcc7SStefano Zampini      Compute change of basis on local pressures (aka zerodiag dofs) with the benign trick
15394f1b2e48SStefano Zampini      This should come earlier then PCISSetUp for extracting the correct subdomain matrices
15404f1b2e48SStefano Zampini   */
15411dd7afcfSStefano Zampini   ierr = PCBDDCBenignShellMat(pc,PETSC_TRUE);CHKERRQ(ierr);
1542d16cbb6bSStefano Zampini   if (pcbddc->benign_saddle_point) {
15439f47a83aSStefano Zampini     PC_IS* pcis = (PC_IS*)pc->data;
15449f47a83aSStefano Zampini 
154505b28244SStefano Zampini     if (pcbddc->user_ChangeOfBasisMatrix || pcbddc->use_change_of_basis || !computesubschurs) pcbddc->benign_change_explicit = PETSC_TRUE;
1546669cc0f4SStefano Zampini     /* detect local saddle point and change the basis in pcbddc->local_mat (TODO: reuse case) */
1547339f8db1SStefano Zampini     ierr = PCBDDCBenignDetectSaddlePoint(pc,&zerodiag);CHKERRQ(ierr);
1548a3df083aSStefano Zampini     /* pop B0 mat from local mat */
1549c263805aSStefano Zampini     ierr = PCBDDCBenignPopOrPushB0(pc,PETSC_TRUE);CHKERRQ(ierr);
15501dd7afcfSStefano Zampini     /* give pcis a hint to not reuse submatrices during PCISCreate */
15511dd7afcfSStefano Zampini     if (pc->flag == SAME_NONZERO_PATTERN && pcis->reusesubmatrices == PETSC_TRUE) {
15521dd7afcfSStefano Zampini       if (pcbddc->benign_n && (pcbddc->benign_change_explicit || pcbddc->dbg_flag)) {
15531dd7afcfSStefano Zampini         pcis->reusesubmatrices = PETSC_FALSE;
15541dd7afcfSStefano Zampini       } else {
1555a3df083aSStefano Zampini         pcis->reusesubmatrices = PETSC_TRUE;
15561dd7afcfSStefano Zampini       }
1557a3df083aSStefano Zampini     } else {
15589f47a83aSStefano Zampini       pcis->reusesubmatrices = PETSC_FALSE;
1559674ae819SStefano Zampini     }
1560a3df083aSStefano Zampini   }
156127b6a85dSStefano Zampini 
15628037d520SStefano Zampini   /* propagate relevant information */
156306a4e24aSStefano Zampini   if (matis->A->symmetric_set) {
156406a4e24aSStefano Zampini     ierr = MatSetOption(pcbddc->local_mat,MAT_SYMMETRIC,matis->A->symmetric);CHKERRQ(ierr);
156506a4e24aSStefano Zampini   }
156606a4e24aSStefano Zampini   if (matis->A->spd_set) {
156706a4e24aSStefano Zampini     ierr = MatSetOption(pcbddc->local_mat,MAT_SPD,matis->A->spd);CHKERRQ(ierr);
156806a4e24aSStefano Zampini   }
1569e496cd5dSStefano Zampini 
15705e8657edSStefano Zampini   /* Set up all the "iterative substructuring" common block without computing solvers */
15715e8657edSStefano Zampini   {
15725e8657edSStefano Zampini     Mat temp_mat;
15735e8657edSStefano Zampini 
15745e8657edSStefano Zampini     temp_mat = matis->A;
15755e8657edSStefano Zampini     matis->A = pcbddc->local_mat;
15765e8657edSStefano Zampini     ierr = PCISSetUp(pc,PETSC_FALSE);CHKERRQ(ierr);
15775e8657edSStefano Zampini     pcbddc->local_mat = matis->A;
15785e8657edSStefano Zampini     matis->A = temp_mat;
15795e8657edSStefano Zampini   }
1580684f6988SStefano Zampini 
158181d14e9dSStefano Zampini   /* Analyze interface */
158264ac59b8SStefano Zampini   if (!pcbddc->graphanalyzed) {
1583674ae819SStefano Zampini     ierr = PCBDDCAnalyzeInterface(pc);CHKERRQ(ierr);
15848de1fae6SStefano Zampini     computeconstraintsmatrix = PETSC_TRUE;
1585345ecf6cSStefano Zampini     if (pcbddc->adaptive_selection && !pcbddc->use_deluxe_scaling && !pcbddc->mat_graph->twodim) {
15864247aa23Sstefano_zampini       SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Cannot compute the adaptive primal space for a problem with 3D edges without deluxe scaling");
1587345ecf6cSStefano Zampini     }
1588a198735bSStefano Zampini     if (pcbddc->compute_nonetflux) {
1589669cc0f4SStefano Zampini       MatNullSpace nnfnnsp;
1590669cc0f4SStefano Zampini 
159121ef3d20SStefano Zampini       if (!pcbddc->divudotp) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Missing divudotp operator");
15928ae0ca82SStefano Zampini       ierr = PCBDDCComputeNoNetFlux(pc->pmat,pcbddc->divudotp,pcbddc->divudotp_trans,pcbddc->divudotp_vl2l,pcbddc->mat_graph,&nnfnnsp);CHKERRQ(ierr);
159371582508SStefano Zampini       /* TODO what if a nearnullspace is already attached? */
15948037d520SStefano Zampini       if (nnfnnsp) {
1595669cc0f4SStefano Zampini         ierr = MatSetNearNullSpace(pc->pmat,nnfnnsp);CHKERRQ(ierr);
1596669cc0f4SStefano Zampini         ierr = MatNullSpaceDestroy(&nnfnnsp);CHKERRQ(ierr);
1597669cc0f4SStefano Zampini       }
1598674ae819SStefano Zampini     }
15998037d520SStefano Zampini   }
1600fb8d54d4SStefano Zampini 
16015408967cSStefano Zampini   /* check existence of a divergence free extension, i.e.
16025408967cSStefano Zampini      b(v_I,p_0) = 0 for all v_I (raise error if not).
16035408967cSStefano Zampini      Also, check that PCBDDCBenignGetOrSetP0 works */
1604ff1f7e73Sstefano_zampini   if (pcbddc->benign_saddle_point && pcbddc->dbg_flag > 1) {
16055408967cSStefano Zampini     ierr = PCBDDCBenignCheck(pc,zerodiag);CHKERRQ(ierr);
160609f581a4SStefano Zampini   }
16074f1b2e48SStefano Zampini   ierr = ISDestroy(&zerodiag);CHKERRQ(ierr);
160806f24817SStefano Zampini 
1609b96c3477SStefano Zampini   /* Setup local dirichlet solver ksp_D and sub_schurs solvers */
1610c703fcc7SStefano Zampini   if (computesubschurs && pcbddc->recompute_topography) {
161108122e43SStefano Zampini     ierr = PCBDDCInitSubSchurs(pc);CHKERRQ(ierr);
1612b1b3d7a2SStefano Zampini   }
16139d54b7f4SStefano Zampini   /* SetUp Scaling operator (scaling matrices could be needed in SubSchursSetUp)*/
16149d54b7f4SStefano Zampini   if (!pcbddc->use_deluxe_scaling) {
16159d54b7f4SStefano Zampini     ierr = PCBDDCScalingSetUp(pc);CHKERRQ(ierr);
16169d54b7f4SStefano Zampini   }
1617c703fcc7SStefano Zampini 
1618c703fcc7SStefano Zampini   /* finish setup solvers and do adaptive selection of constraints */
1619b334f244SStefano Zampini   sub_schurs = pcbddc->sub_schurs;
1620b334f244SStefano Zampini   if (sub_schurs && sub_schurs->schur_explicit) {
16212070dbb6SStefano Zampini     if (computesubschurs) {
162208122e43SStefano Zampini       ierr = PCBDDCSetUpSubSchurs(pc);CHKERRQ(ierr);
16232070dbb6SStefano Zampini     }
1624d5574798SStefano Zampini     ierr = PCBDDCSetUpLocalSolvers(pc,PETSC_TRUE,PETSC_FALSE);CHKERRQ(ierr);
1625d5574798SStefano Zampini   } else {
1626d5574798SStefano Zampini     ierr = PCBDDCSetUpLocalSolvers(pc,PETSC_TRUE,PETSC_FALSE);CHKERRQ(ierr);
16272070dbb6SStefano Zampini     if (computesubschurs) {
1628d5574798SStefano Zampini       ierr = PCBDDCSetUpSubSchurs(pc);CHKERRQ(ierr);
1629d5574798SStefano Zampini     }
16302070dbb6SStefano Zampini   }
163108122e43SStefano Zampini   if (pcbddc->adaptive_selection) {
163208122e43SStefano Zampini     ierr = PCBDDCAdaptiveSelection(pc);CHKERRQ(ierr);
16338de1fae6SStefano Zampini     computeconstraintsmatrix = PETSC_TRUE;
1634b7eb3628SStefano Zampini   }
1635684f6988SStefano Zampini 
1636f4ddd8eeSStefano Zampini   /* infer if NullSpace object attached to Mat via MatSetNearNullSpace has changed */
1637fb8d54d4SStefano Zampini   new_nearnullspace_provided = PETSC_FALSE;
1638f4ddd8eeSStefano Zampini   ierr = MatGetNearNullSpace(pc->pmat,&nearnullspace);CHKERRQ(ierr);
1639f4ddd8eeSStefano Zampini   if (pcbddc->onearnullspace) { /* already used nearnullspace */
1640f4ddd8eeSStefano Zampini     if (!nearnullspace) { /* near null space attached to mat has been destroyed */
1641f4ddd8eeSStefano Zampini       new_nearnullspace_provided = PETSC_TRUE;
1642f4ddd8eeSStefano Zampini     } else {
1643f4ddd8eeSStefano Zampini       /* determine if the two nullspaces are different (should be lightweight) */
1644f4ddd8eeSStefano Zampini       if (nearnullspace != pcbddc->onearnullspace) {
1645f4ddd8eeSStefano Zampini         new_nearnullspace_provided = PETSC_TRUE;
1646165b64e2SStefano Zampini       } else { /* maybe the user has changed the content of the nearnullspace so check vectors ObjectStateId */
1647f4ddd8eeSStefano Zampini         PetscInt         i;
1648165b64e2SStefano Zampini         const Vec        *nearnullvecs;
1649165b64e2SStefano Zampini         PetscObjectState state;
1650165b64e2SStefano Zampini         PetscInt         nnsp_size;
1651165b64e2SStefano Zampini         ierr = MatNullSpaceGetVecs(nearnullspace,NULL,&nnsp_size,&nearnullvecs);CHKERRQ(ierr);
1652f4ddd8eeSStefano Zampini         for (i=0;i<nnsp_size;i++) {
1653f4ddd8eeSStefano Zampini           ierr = PetscObjectStateGet((PetscObject)nearnullvecs[i],&state);CHKERRQ(ierr);
1654165b64e2SStefano Zampini           if (pcbddc->onearnullvecs_state[i] != state) {
1655f4ddd8eeSStefano Zampini             new_nearnullspace_provided = PETSC_TRUE;
1656f4ddd8eeSStefano Zampini             break;
1657f4ddd8eeSStefano Zampini           }
1658f4ddd8eeSStefano Zampini         }
1659f4ddd8eeSStefano Zampini       }
1660f4ddd8eeSStefano Zampini     }
1661f4ddd8eeSStefano Zampini   } else {
1662f4ddd8eeSStefano Zampini     if (!nearnullspace) { /* both nearnullspaces are null */
1663f4ddd8eeSStefano Zampini       new_nearnullspace_provided = PETSC_FALSE;
1664f4ddd8eeSStefano Zampini     } else { /* nearnullspace attached later */
1665f4ddd8eeSStefano Zampini       new_nearnullspace_provided = PETSC_TRUE;
1666f4ddd8eeSStefano Zampini     }
1667f4ddd8eeSStefano Zampini   }
1668f4ddd8eeSStefano Zampini 
1669f4ddd8eeSStefano Zampini   /* Setup constraints and related work vectors */
1670727cdba6SStefano Zampini   /* reset primal space flags */
1671f4ddd8eeSStefano Zampini   pcbddc->new_primal_space = PETSC_FALSE;
1672727cdba6SStefano Zampini   pcbddc->new_primal_space_local = PETSC_FALSE;
16738de1fae6SStefano Zampini   if (computeconstraintsmatrix || new_nearnullspace_provided) {
1674727cdba6SStefano Zampini     /* It also sets the primal space flags */
1675674ae819SStefano Zampini     ierr = PCBDDCConstraintsSetUp(pc);CHKERRQ(ierr);
16769543d0ffSStefano Zampini   }
1677e7b262bdSStefano Zampini   /* Allocate needed local vectors (which depends on quantities defined during ConstraintsSetUp) */
1678f4ddd8eeSStefano Zampini   ierr = PCBDDCSetUpLocalWorkVectors(pc);CHKERRQ(ierr);
16795e8657edSStefano Zampini 
16805e8657edSStefano Zampini   if (pcbddc->use_change_of_basis) {
16815e8657edSStefano Zampini     PC_IS *pcis = (PC_IS*)(pc->data);
16825e8657edSStefano Zampini 
16835e8657edSStefano Zampini     ierr = PCBDDCComputeLocalMatrix(pc,pcbddc->ChangeOfBasisMatrix);CHKERRQ(ierr);
16844f1b2e48SStefano Zampini     if (pcbddc->benign_change) {
16851dd7afcfSStefano Zampini       ierr = MatDestroy(&pcbddc->benign_B0);CHKERRQ(ierr);
1686c263805aSStefano Zampini       /* pop B0 from pcbddc->local_mat */
1687c263805aSStefano Zampini       ierr = PCBDDCBenignPopOrPushB0(pc,PETSC_TRUE);CHKERRQ(ierr);
1688c263805aSStefano Zampini     }
16895e8657edSStefano Zampini     /* get submatrices */
16905e8657edSStefano Zampini     ierr = MatDestroy(&pcis->A_IB);CHKERRQ(ierr);
16915e8657edSStefano Zampini     ierr = MatDestroy(&pcis->A_BI);CHKERRQ(ierr);
16925e8657edSStefano Zampini     ierr = MatDestroy(&pcis->A_BB);CHKERRQ(ierr);
16937dae84e0SHong Zhang     ierr = MatCreateSubMatrix(pcbddc->local_mat,pcis->is_B_local,pcis->is_B_local,MAT_INITIAL_MATRIX,&pcis->A_BB);CHKERRQ(ierr);
16947dae84e0SHong Zhang     ierr = MatCreateSubMatrix(pcbddc->local_mat,pcis->is_I_local,pcis->is_B_local,MAT_INITIAL_MATRIX,&pcis->A_IB);CHKERRQ(ierr);
16957dae84e0SHong Zhang     ierr = MatCreateSubMatrix(pcbddc->local_mat,pcis->is_B_local,pcis->is_I_local,MAT_INITIAL_MATRIX,&pcis->A_BI);CHKERRQ(ierr);
16963975b054SStefano Zampini     /* set flag in pcis to not reuse submatrices during PCISCreate */
16973975b054SStefano Zampini     pcis->reusesubmatrices = PETSC_FALSE;
16989c6a02ceSStefano Zampini   } else if (!pcbddc->user_ChangeOfBasisMatrix && !pcbddc->benign_change) {
1699b96c3477SStefano Zampini     ierr = MatDestroy(&pcbddc->local_mat);CHKERRQ(ierr);
17005e8657edSStefano Zampini     ierr = PetscObjectReference((PetscObject)matis->A);CHKERRQ(ierr);
17015e8657edSStefano Zampini     pcbddc->local_mat = matis->A;
17025e8657edSStefano Zampini   }
170335509ce9Sstefano_zampini 
170435509ce9Sstefano_zampini   /* interface pressure block row for B_C */
170535509ce9Sstefano_zampini   ierr = PetscObjectQuery((PetscObject)pc,"__KSPFETIDP_lP" ,(PetscObject*)&lP);CHKERRQ(ierr);
170635509ce9Sstefano_zampini   ierr = PetscObjectQuery((PetscObject)pc,"__KSPFETIDP_lA" ,(PetscObject*)&lA);CHKERRQ(ierr);
170735509ce9Sstefano_zampini   if (lA && lP) {
170835509ce9Sstefano_zampini     PC_IS*    pcis = (PC_IS*)pc->data;
170935509ce9Sstefano_zampini     Mat       B_BI,B_BB,Bt_BI,Bt_BB;
171035509ce9Sstefano_zampini     PetscBool issym;
171135509ce9Sstefano_zampini     ierr = MatIsSymmetric(lA,PETSC_SMALL,&issym);CHKERRQ(ierr);
17126cc1294bSstefano_zampini     if (issym) {
17137dae84e0SHong Zhang       ierr = MatCreateSubMatrix(lA,lP,pcis->is_I_local,MAT_INITIAL_MATRIX,&B_BI);CHKERRQ(ierr);
17147dae84e0SHong Zhang       ierr = MatCreateSubMatrix(lA,lP,pcis->is_B_local,MAT_INITIAL_MATRIX,&B_BB);CHKERRQ(ierr);
171535509ce9Sstefano_zampini       ierr = MatCreateTranspose(B_BI,&Bt_BI);CHKERRQ(ierr);
171635509ce9Sstefano_zampini       ierr = MatCreateTranspose(B_BB,&Bt_BB);CHKERRQ(ierr);
171735509ce9Sstefano_zampini     } else {
17187dae84e0SHong Zhang       ierr = MatCreateSubMatrix(lA,lP,pcis->is_I_local,MAT_INITIAL_MATRIX,&B_BI);CHKERRQ(ierr);
17197dae84e0SHong Zhang       ierr = MatCreateSubMatrix(lA,lP,pcis->is_B_local,MAT_INITIAL_MATRIX,&B_BB);CHKERRQ(ierr);
17207dae84e0SHong Zhang       ierr = MatCreateSubMatrix(lA,pcis->is_I_local,lP,MAT_INITIAL_MATRIX,&Bt_BI);CHKERRQ(ierr);
17217dae84e0SHong Zhang       ierr = MatCreateSubMatrix(lA,pcis->is_B_local,lP,MAT_INITIAL_MATRIX,&Bt_BB);CHKERRQ(ierr);
172235509ce9Sstefano_zampini     }
172335509ce9Sstefano_zampini     ierr = PetscObjectCompose((PetscObject)pc,"__KSPFETIDP_B_BI",(PetscObject)B_BI);CHKERRQ(ierr);
172435509ce9Sstefano_zampini     ierr = PetscObjectCompose((PetscObject)pc,"__KSPFETIDP_B_BB",(PetscObject)B_BB);CHKERRQ(ierr);
172535509ce9Sstefano_zampini     ierr = PetscObjectCompose((PetscObject)pc,"__KSPFETIDP_Bt_BI",(PetscObject)Bt_BI);CHKERRQ(ierr);
172635509ce9Sstefano_zampini     ierr = PetscObjectCompose((PetscObject)pc,"__KSPFETIDP_Bt_BB",(PetscObject)Bt_BB);CHKERRQ(ierr);
172735509ce9Sstefano_zampini     ierr = MatDestroy(&B_BI);CHKERRQ(ierr);
172835509ce9Sstefano_zampini     ierr = MatDestroy(&B_BB);CHKERRQ(ierr);
172935509ce9Sstefano_zampini     ierr = MatDestroy(&Bt_BI);CHKERRQ(ierr);
173035509ce9Sstefano_zampini     ierr = MatDestroy(&Bt_BB);CHKERRQ(ierr);
173135509ce9Sstefano_zampini   }
173235509ce9Sstefano_zampini 
1733b96c3477SStefano Zampini   /* SetUp coarse and local Neumann solvers */
173499cc7994SStefano Zampini   ierr = PCBDDCSetUpSolvers(pc);CHKERRQ(ierr);
1735b96c3477SStefano Zampini   /* SetUp Scaling operator */
17369d54b7f4SStefano Zampini   if (pcbddc->use_deluxe_scaling) {
1737674ae819SStefano Zampini     ierr = PCBDDCScalingSetUp(pc);CHKERRQ(ierr);
17380c7d97c5SJed Brown   }
1739c703fcc7SStefano Zampini 
17401dd7afcfSStefano Zampini   /* mark topography as done */
174156282151SStefano Zampini   pcbddc->recompute_topography = PETSC_FALSE;
17420369aaf7SStefano Zampini 
17431dd7afcfSStefano Zampini   /* wrap pcis->A_IB and pcis->A_BI if we did not change explicitly the variables on the pressures */
17441dd7afcfSStefano Zampini   ierr = PCBDDCBenignShellMat(pc,PETSC_FALSE);CHKERRQ(ierr);
17451dd7afcfSStefano Zampini 
174658a03d70SStefano Zampini   if (pcbddc->dbg_flag) {
174758a03d70SStefano Zampini     ierr = PetscViewerASCIISubtractTab(pcbddc->dbg_viewer,2*pcbddc->current_level);CHKERRQ(ierr);
17482b510759SStefano Zampini   }
17490c7d97c5SJed Brown   PetscFunctionReturn(0);
17500c7d97c5SJed Brown }
17510c7d97c5SJed Brown 
17520c7d97c5SJed Brown /*
175350efa1b5SStefano Zampini    PCApply_BDDC - Applies the BDDC operator to a vector.
17540c7d97c5SJed Brown 
17550c7d97c5SJed Brown    Input Parameters:
17560f202f7eSStefano Zampini +  pc - the preconditioner context
17570f202f7eSStefano Zampini -  r - input vector (global)
17580c7d97c5SJed Brown 
17590c7d97c5SJed Brown    Output Parameter:
17600c7d97c5SJed Brown .  z - output vector (global)
17610c7d97c5SJed Brown 
17620c7d97c5SJed Brown    Application Interface Routine: PCApply()
17630c7d97c5SJed Brown  */
176453cdbc3dSStefano Zampini PetscErrorCode PCApply_BDDC(PC pc,Vec r,Vec z)
17650c7d97c5SJed Brown {
17660c7d97c5SJed Brown   PC_IS             *pcis = (PC_IS*)(pc->data);
17670c7d97c5SJed Brown   PC_BDDC           *pcbddc = (PC_BDDC*)(pc->data);
1768b097fa66SStefano Zampini   PetscInt          n_B = pcis->n_B, n_D = pcis->n - n_B;
17690c7d97c5SJed Brown   PetscErrorCode    ierr;
17703b03a366Sstefano_zampini   const PetscScalar one = 1.0;
17713b03a366Sstefano_zampini   const PetscScalar m_one = -1.0;
17722617d88aSStefano Zampini   const PetscScalar zero = 0.0;
17730c7d97c5SJed Brown 
17740c7d97c5SJed Brown /* This code is similar to that provided in nn.c for PCNN
17750c7d97c5SJed Brown    NN interface preconditioner changed to BDDC
1776b097fa66SStefano Zampini    Added support for M_3 preconditioner in the reference article (code is active if pcbddc->switch_static == PETSC_TRUE) */
17770c7d97c5SJed Brown 
17780c7d97c5SJed Brown   PetscFunctionBegin;
1779f3d41395Sstefano_zampini   ierr = PetscCitationsRegister(citation,&cited);CHKERRQ(ierr);
17801dd7afcfSStefano Zampini   if (pcbddc->ChangeOfBasisMatrix) {
17811dd7afcfSStefano Zampini     Vec swap;
178227b6a85dSStefano Zampini 
178327b6a85dSStefano Zampini     ierr = MatMultTranspose(pcbddc->ChangeOfBasisMatrix,r,pcbddc->work_change);CHKERRQ(ierr);
17841dd7afcfSStefano Zampini     swap = pcbddc->work_change;
17851dd7afcfSStefano Zampini     pcbddc->work_change = r;
17861dd7afcfSStefano Zampini     r = swap;
17871dd7afcfSStefano Zampini     /* save rhs so that we don't need to apply the change of basis for the exact dirichlet trick in PreSolve */
17889cc2a9b1Sstefano_zampini     if (pcbddc->benign_apply_coarse_only && pcbddc->use_exact_dirichlet_trick && pcbddc->change_interior) {
17891dd7afcfSStefano Zampini       ierr = VecCopy(r,pcis->vec1_global);CHKERRQ(ierr);
17901dd7afcfSStefano Zampini       ierr = VecLockPush(pcis->vec1_global);CHKERRQ(ierr);
17911dd7afcfSStefano Zampini     }
17921dd7afcfSStefano Zampini   }
179327b6a85dSStefano Zampini   if (pcbddc->benign_have_null) { /* get p0 from r */
1794015636ebSStefano Zampini     ierr = PCBDDCBenignGetOrSetP0(pc,r,PETSC_TRUE);CHKERRQ(ierr);
1795efc2fbd9SStefano Zampini   }
17968ae0ca82SStefano Zampini   if (!pcbddc->exact_dirichlet_trick_app && !pcbddc->benign_apply_coarse_only) {
1797b097fa66SStefano Zampini     ierr = VecCopy(r,z);CHKERRQ(ierr);
17980c7d97c5SJed Brown     /* First Dirichlet solve */
17990c7d97c5SJed Brown     ierr = VecScatterBegin(pcis->global_to_D,r,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
18000c7d97c5SJed Brown     ierr = VecScatterEnd(pcis->global_to_D,r,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
18010c7d97c5SJed Brown     /*
18020c7d97c5SJed Brown       Assembling right hand side for BDDC operator
1803b097fa66SStefano Zampini       - pcis->vec1_D for the Dirichlet part (if needed, i.e. pcbddc->switch_static == PETSC_TRUE)
1804674ae819SStefano Zampini       - pcis->vec1_B the interface part of the global vector z
18050c7d97c5SJed Brown     */
1806b097fa66SStefano Zampini     if (n_D) {
1807b097fa66SStefano Zampini       ierr = KSPSolve(pcbddc->ksp_D,pcis->vec1_D,pcis->vec2_D);CHKERRQ(ierr);
18080c7d97c5SJed Brown       ierr = VecScale(pcis->vec2_D,m_one);CHKERRQ(ierr);
180916909a7fSStefano Zampini       if (pcbddc->switch_static) {
181016909a7fSStefano Zampini         Mat_IS *matis = (Mat_IS*)(pc->mat->data);
181116909a7fSStefano Zampini 
181216909a7fSStefano Zampini         ierr = VecSet(pcis->vec1_N,0.);CHKERRQ(ierr);
181316909a7fSStefano Zampini         ierr = VecScatterBegin(pcis->N_to_D,pcis->vec2_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
181416909a7fSStefano Zampini         ierr = VecScatterEnd(pcis->N_to_D,pcis->vec2_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
181516909a7fSStefano Zampini         if (!pcbddc->switch_static_change) {
181616909a7fSStefano Zampini           ierr = MatMult(matis->A,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
181716909a7fSStefano Zampini         } else {
181816909a7fSStefano Zampini           ierr = MatMult(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
181916909a7fSStefano Zampini           ierr = MatMult(matis->A,pcis->vec2_N,pcis->vec1_N);CHKERRQ(ierr);
182016909a7fSStefano Zampini           ierr = MatMultTranspose(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
182116909a7fSStefano Zampini         }
182216909a7fSStefano Zampini         ierr = VecScatterBegin(pcis->N_to_D,pcis->vec2_N,pcis->vec1_D,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
182316909a7fSStefano Zampini         ierr = VecScatterEnd(pcis->N_to_D,pcis->vec2_N,pcis->vec1_D,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
182416909a7fSStefano Zampini         ierr = VecScatterBegin(pcis->N_to_B,pcis->vec2_N,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
182516909a7fSStefano Zampini         ierr = VecScatterEnd(pcis->N_to_B,pcis->vec2_N,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
182616909a7fSStefano Zampini       } else {
1827b097fa66SStefano Zampini         ierr = MatMult(pcis->A_BI,pcis->vec2_D,pcis->vec1_B);CHKERRQ(ierr);
182816909a7fSStefano Zampini       }
1829b097fa66SStefano Zampini     } else {
1830b097fa66SStefano Zampini       ierr = VecSet(pcis->vec1_B,zero);CHKERRQ(ierr);
1831b097fa66SStefano Zampini     }
18320c7d97c5SJed Brown     ierr = VecScatterBegin(pcis->global_to_B,pcis->vec1_B,z,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
18330c7d97c5SJed Brown     ierr = VecScatterEnd(pcis->global_to_B,pcis->vec1_B,z,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1834674ae819SStefano Zampini     ierr = PCBDDCScalingRestriction(pc,z,pcis->vec1_B);CHKERRQ(ierr);
1835b76ba322SStefano Zampini   } else {
18364fee134fSStefano Zampini     if (!pcbddc->benign_apply_coarse_only) {
1837674ae819SStefano Zampini       ierr = PCBDDCScalingRestriction(pc,r,pcis->vec1_B);CHKERRQ(ierr);
1838b76ba322SStefano Zampini     }
18394fee134fSStefano Zampini   }
1840b76ba322SStefano Zampini 
18412617d88aSStefano Zampini   /* Apply interface preconditioner
18422617d88aSStefano Zampini      input/output vecs: pcis->vec1_B and pcis->vec1_D */
1843dc359a40SStefano Zampini   ierr = PCBDDCApplyInterfacePreconditioner(pc,PETSC_FALSE);CHKERRQ(ierr);
18442617d88aSStefano Zampini 
1845674ae819SStefano Zampini   /* Apply transpose of partition of unity operator */
1846674ae819SStefano Zampini   ierr = PCBDDCScalingExtension(pc,pcis->vec1_B,z);CHKERRQ(ierr);
18470c7d97c5SJed Brown 
18483b03a366Sstefano_zampini   /* Second Dirichlet solve and assembling of output */
18490c7d97c5SJed Brown   ierr = VecScatterBegin(pcis->global_to_B,z,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
18500c7d97c5SJed Brown   ierr = VecScatterEnd(pcis->global_to_B,z,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1851b097fa66SStefano Zampini   if (n_B) {
185216909a7fSStefano Zampini     if (pcbddc->switch_static) {
185316909a7fSStefano Zampini       Mat_IS *matis = (Mat_IS*)(pc->mat->data);
185416909a7fSStefano Zampini 
185516909a7fSStefano Zampini       ierr = VecScatterBegin(pcis->N_to_D,pcis->vec1_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
185616909a7fSStefano Zampini       ierr = VecScatterEnd(pcis->N_to_D,pcis->vec1_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
185716909a7fSStefano Zampini       ierr = VecScatterBegin(pcis->N_to_B,pcis->vec1_B,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
185816909a7fSStefano Zampini       ierr = VecScatterEnd(pcis->N_to_B,pcis->vec1_B,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
185916909a7fSStefano Zampini       if (!pcbddc->switch_static_change) {
186016909a7fSStefano Zampini         ierr = MatMult(matis->A,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
186116909a7fSStefano Zampini       } else {
186216909a7fSStefano Zampini         ierr = MatMult(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
186316909a7fSStefano Zampini         ierr = MatMult(matis->A,pcis->vec2_N,pcis->vec1_N);CHKERRQ(ierr);
186416909a7fSStefano Zampini         ierr = MatMultTranspose(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
186516909a7fSStefano Zampini       }
186616909a7fSStefano Zampini       ierr = VecScatterBegin(pcis->N_to_D,pcis->vec2_N,pcis->vec3_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
186716909a7fSStefano Zampini       ierr = VecScatterEnd(pcis->N_to_D,pcis->vec2_N,pcis->vec3_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
186816909a7fSStefano Zampini     } else {
18690c7d97c5SJed Brown       ierr = MatMult(pcis->A_IB,pcis->vec1_B,pcis->vec3_D);CHKERRQ(ierr);
187016909a7fSStefano Zampini     }
187116909a7fSStefano Zampini   } else if (pcbddc->switch_static) { /* n_B is zero */
187216909a7fSStefano Zampini     Mat_IS *matis = (Mat_IS*)(pc->mat->data);
187316909a7fSStefano Zampini 
187416909a7fSStefano Zampini     if (!pcbddc->switch_static_change) {
187516909a7fSStefano Zampini       ierr = MatMult(matis->A,pcis->vec1_D,pcis->vec3_D);CHKERRQ(ierr);
187616909a7fSStefano Zampini     } else {
187716909a7fSStefano Zampini       ierr = MatMult(pcbddc->switch_static_change,pcis->vec1_D,pcis->vec1_N);CHKERRQ(ierr);
187816909a7fSStefano Zampini       ierr = MatMult(matis->A,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
187916909a7fSStefano Zampini       ierr = MatMultTranspose(pcbddc->switch_static_change,pcis->vec2_N,pcis->vec3_D);CHKERRQ(ierr);
188016909a7fSStefano Zampini     }
1881b097fa66SStefano Zampini   }
1882df187020SStefano Zampini   ierr = KSPSolve(pcbddc->ksp_D,pcis->vec3_D,pcis->vec4_D);CHKERRQ(ierr);
1883efc2fbd9SStefano Zampini 
18848ae0ca82SStefano Zampini   if (!pcbddc->exact_dirichlet_trick_app && !pcbddc->benign_apply_coarse_only) {
1885b097fa66SStefano Zampini     if (pcbddc->switch_static) {
1886b097fa66SStefano Zampini       ierr = VecAXPBYPCZ(pcis->vec2_D,m_one,one,m_one,pcis->vec4_D,pcis->vec1_D);CHKERRQ(ierr);
1887b097fa66SStefano Zampini     } else {
1888b097fa66SStefano Zampini       ierr = VecAXPBY(pcis->vec2_D,m_one,m_one,pcis->vec4_D);CHKERRQ(ierr);
1889b097fa66SStefano Zampini     }
18900c7d97c5SJed Brown     ierr = VecScatterBegin(pcis->global_to_D,pcis->vec2_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
18910c7d97c5SJed Brown     ierr = VecScatterEnd(pcis->global_to_D,pcis->vec2_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1892b097fa66SStefano Zampini   } else {
1893b097fa66SStefano Zampini     if (pcbddc->switch_static) {
1894b097fa66SStefano Zampini       ierr = VecAXPBY(pcis->vec4_D,one,m_one,pcis->vec1_D);CHKERRQ(ierr);
1895b097fa66SStefano Zampini     } else {
1896b097fa66SStefano Zampini       ierr = VecScale(pcis->vec4_D,m_one);CHKERRQ(ierr);
1897b097fa66SStefano Zampini     }
1898b097fa66SStefano Zampini     ierr = VecScatterBegin(pcis->global_to_D,pcis->vec4_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1899b097fa66SStefano Zampini     ierr = VecScatterEnd(pcis->global_to_D,pcis->vec4_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1900b097fa66SStefano Zampini   }
190127b6a85dSStefano Zampini   if (pcbddc->benign_have_null) { /* set p0 (computed in PCBDDCApplyInterface) */
19021dd7afcfSStefano Zampini     if (pcbddc->benign_apply_coarse_only) {
19031dd7afcfSStefano Zampini       ierr = PetscMemzero(pcbddc->benign_p0,pcbddc->benign_n*sizeof(PetscScalar));CHKERRQ(ierr);
19041dd7afcfSStefano Zampini     }
1905015636ebSStefano Zampini     ierr = PCBDDCBenignGetOrSetP0(pc,z,PETSC_FALSE);CHKERRQ(ierr);
1906efc2fbd9SStefano Zampini   }
19071f4df5f7SStefano Zampini 
19081dd7afcfSStefano Zampini   if (pcbddc->ChangeOfBasisMatrix) {
1909f913dca9SStefano Zampini     pcbddc->work_change = r;
19101dd7afcfSStefano Zampini     ierr = VecCopy(z,pcbddc->work_change);CHKERRQ(ierr);
19111dd7afcfSStefano Zampini     ierr = MatMult(pcbddc->ChangeOfBasisMatrix,pcbddc->work_change,z);CHKERRQ(ierr);
19121dd7afcfSStefano Zampini   }
19130c7d97c5SJed Brown   PetscFunctionReturn(0);
19140c7d97c5SJed Brown }
191550efa1b5SStefano Zampini 
191650efa1b5SStefano Zampini /*
191750efa1b5SStefano Zampini    PCApplyTranspose_BDDC - Applies the transpose of the BDDC operator to a vector.
191850efa1b5SStefano Zampini 
191950efa1b5SStefano Zampini    Input Parameters:
19200f202f7eSStefano Zampini +  pc - the preconditioner context
19210f202f7eSStefano Zampini -  r - input vector (global)
192250efa1b5SStefano Zampini 
192350efa1b5SStefano Zampini    Output Parameter:
192450efa1b5SStefano Zampini .  z - output vector (global)
192550efa1b5SStefano Zampini 
192650efa1b5SStefano Zampini    Application Interface Routine: PCApplyTranspose()
192750efa1b5SStefano Zampini  */
192850efa1b5SStefano Zampini PetscErrorCode PCApplyTranspose_BDDC(PC pc,Vec r,Vec z)
192950efa1b5SStefano Zampini {
193050efa1b5SStefano Zampini   PC_IS             *pcis = (PC_IS*)(pc->data);
193150efa1b5SStefano Zampini   PC_BDDC           *pcbddc = (PC_BDDC*)(pc->data);
1932b097fa66SStefano Zampini   PetscInt          n_B = pcis->n_B, n_D = pcis->n - n_B;
193350efa1b5SStefano Zampini   PetscErrorCode    ierr;
193450efa1b5SStefano Zampini   const PetscScalar one = 1.0;
193550efa1b5SStefano Zampini   const PetscScalar m_one = -1.0;
193650efa1b5SStefano Zampini   const PetscScalar zero = 0.0;
193750efa1b5SStefano Zampini 
193850efa1b5SStefano Zampini   PetscFunctionBegin;
1939f3d41395Sstefano_zampini   ierr = PetscCitationsRegister(citation,&cited);CHKERRQ(ierr);
19401dd7afcfSStefano Zampini   if (pcbddc->ChangeOfBasisMatrix) {
19411dd7afcfSStefano Zampini     Vec swap;
194227b6a85dSStefano Zampini 
194327b6a85dSStefano Zampini     ierr = MatMultTranspose(pcbddc->ChangeOfBasisMatrix,r,pcbddc->work_change);CHKERRQ(ierr);
19441dd7afcfSStefano Zampini     swap = pcbddc->work_change;
19451dd7afcfSStefano Zampini     pcbddc->work_change = r;
19461dd7afcfSStefano Zampini     r = swap;
194727b6a85dSStefano Zampini     /* save rhs so that we don't need to apply the change of basis for the exact dirichlet trick in PreSolve */
19488ae0ca82SStefano Zampini     if (pcbddc->benign_apply_coarse_only && pcbddc->exact_dirichlet_trick_app && pcbddc->change_interior) {
194927b6a85dSStefano Zampini       ierr = VecCopy(r,pcis->vec1_global);CHKERRQ(ierr);
195027b6a85dSStefano Zampini       ierr = VecLockPush(pcis->vec1_global);CHKERRQ(ierr);
19511dd7afcfSStefano Zampini     }
195227b6a85dSStefano Zampini   }
195327b6a85dSStefano Zampini   if (pcbddc->benign_have_null) { /* get p0 from r */
1954537c1cdfSStefano Zampini     ierr = PCBDDCBenignGetOrSetP0(pc,r,PETSC_TRUE);CHKERRQ(ierr);
1955537c1cdfSStefano Zampini   }
19568ae0ca82SStefano Zampini   if (!pcbddc->exact_dirichlet_trick_app && !pcbddc->benign_apply_coarse_only) {
1957b097fa66SStefano Zampini     ierr = VecCopy(r,z);CHKERRQ(ierr);
195850efa1b5SStefano Zampini     /* First Dirichlet solve */
195950efa1b5SStefano Zampini     ierr = VecScatterBegin(pcis->global_to_D,r,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
196050efa1b5SStefano Zampini     ierr = VecScatterEnd(pcis->global_to_D,r,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
196150efa1b5SStefano Zampini     /*
196250efa1b5SStefano Zampini       Assembling right hand side for BDDC operator
1963b097fa66SStefano Zampini       - pcis->vec1_D for the Dirichlet part (if needed, i.e. pcbddc->switch_static == PETSC_TRUE)
196450efa1b5SStefano Zampini       - pcis->vec1_B the interface part of the global vector z
196550efa1b5SStefano Zampini     */
1966b097fa66SStefano Zampini     if (n_D) {
1967b097fa66SStefano Zampini       ierr = KSPSolveTranspose(pcbddc->ksp_D,pcis->vec1_D,pcis->vec2_D);CHKERRQ(ierr);
196850efa1b5SStefano Zampini       ierr = VecScale(pcis->vec2_D,m_one);CHKERRQ(ierr);
196916909a7fSStefano Zampini       if (pcbddc->switch_static) {
197016909a7fSStefano Zampini         Mat_IS *matis = (Mat_IS*)(pc->mat->data);
197116909a7fSStefano Zampini 
197216909a7fSStefano Zampini         ierr = VecSet(pcis->vec1_N,0.);CHKERRQ(ierr);
197316909a7fSStefano Zampini         ierr = VecScatterBegin(pcis->N_to_D,pcis->vec2_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
197416909a7fSStefano Zampini         ierr = VecScatterEnd(pcis->N_to_D,pcis->vec2_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
197516909a7fSStefano Zampini         if (!pcbddc->switch_static_change) {
197616909a7fSStefano Zampini           ierr = MatMultTranspose(matis->A,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
197716909a7fSStefano Zampini         } else {
197816909a7fSStefano Zampini           ierr = MatMult(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
197916909a7fSStefano Zampini           ierr = MatMultTranspose(matis->A,pcis->vec2_N,pcis->vec1_N);CHKERRQ(ierr);
198016909a7fSStefano Zampini           ierr = MatMultTranspose(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
198116909a7fSStefano Zampini         }
198216909a7fSStefano Zampini         ierr = VecScatterBegin(pcis->N_to_D,pcis->vec2_N,pcis->vec1_D,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
198316909a7fSStefano Zampini         ierr = VecScatterEnd(pcis->N_to_D,pcis->vec2_N,pcis->vec1_D,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
198416909a7fSStefano Zampini         ierr = VecScatterBegin(pcis->N_to_B,pcis->vec2_N,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
198516909a7fSStefano Zampini         ierr = VecScatterEnd(pcis->N_to_B,pcis->vec2_N,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
198616909a7fSStefano Zampini       } else {
1987b097fa66SStefano Zampini         ierr = MatMultTranspose(pcis->A_IB,pcis->vec2_D,pcis->vec1_B);CHKERRQ(ierr);
198816909a7fSStefano Zampini       }
1989b097fa66SStefano Zampini     } else {
1990b097fa66SStefano Zampini       ierr = VecSet(pcis->vec1_B,zero);CHKERRQ(ierr);
1991b097fa66SStefano Zampini     }
199250efa1b5SStefano Zampini     ierr = VecScatterBegin(pcis->global_to_B,pcis->vec1_B,z,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
199350efa1b5SStefano Zampini     ierr = VecScatterEnd(pcis->global_to_B,pcis->vec1_B,z,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
199450efa1b5SStefano Zampini     ierr = PCBDDCScalingRestriction(pc,z,pcis->vec1_B);CHKERRQ(ierr);
199550efa1b5SStefano Zampini   } else {
199650efa1b5SStefano Zampini     ierr = PCBDDCScalingRestriction(pc,r,pcis->vec1_B);CHKERRQ(ierr);
199750efa1b5SStefano Zampini   }
199850efa1b5SStefano Zampini 
199950efa1b5SStefano Zampini   /* Apply interface preconditioner
200050efa1b5SStefano Zampini      input/output vecs: pcis->vec1_B and pcis->vec1_D */
2001dc359a40SStefano Zampini   ierr = PCBDDCApplyInterfacePreconditioner(pc,PETSC_TRUE);CHKERRQ(ierr);
200250efa1b5SStefano Zampini 
200350efa1b5SStefano Zampini   /* Apply transpose of partition of unity operator */
200450efa1b5SStefano Zampini   ierr = PCBDDCScalingExtension(pc,pcis->vec1_B,z);CHKERRQ(ierr);
200550efa1b5SStefano Zampini 
200650efa1b5SStefano Zampini   /* Second Dirichlet solve and assembling of output */
200750efa1b5SStefano Zampini   ierr = VecScatterBegin(pcis->global_to_B,z,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
200850efa1b5SStefano Zampini   ierr = VecScatterEnd(pcis->global_to_B,z,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2009b097fa66SStefano Zampini   if (n_B) {
201016909a7fSStefano Zampini     if (pcbddc->switch_static) {
201116909a7fSStefano Zampini       Mat_IS *matis = (Mat_IS*)(pc->mat->data);
201216909a7fSStefano Zampini 
201316909a7fSStefano Zampini       ierr = VecScatterBegin(pcis->N_to_D,pcis->vec1_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
201416909a7fSStefano Zampini       ierr = VecScatterEnd(pcis->N_to_D,pcis->vec1_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
201516909a7fSStefano Zampini       ierr = VecScatterBegin(pcis->N_to_B,pcis->vec1_B,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
201616909a7fSStefano Zampini       ierr = VecScatterEnd(pcis->N_to_B,pcis->vec1_B,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
201716909a7fSStefano Zampini       if (!pcbddc->switch_static_change) {
201816909a7fSStefano Zampini         ierr = MatMultTranspose(matis->A,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
201916909a7fSStefano Zampini       } else {
202016909a7fSStefano Zampini         ierr = MatMult(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
202116909a7fSStefano Zampini         ierr = MatMultTranspose(matis->A,pcis->vec2_N,pcis->vec1_N);CHKERRQ(ierr);
202216909a7fSStefano Zampini         ierr = MatMultTranspose(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
202316909a7fSStefano Zampini       }
202416909a7fSStefano Zampini       ierr = VecScatterBegin(pcis->N_to_D,pcis->vec2_N,pcis->vec3_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
202516909a7fSStefano Zampini       ierr = VecScatterEnd(pcis->N_to_D,pcis->vec2_N,pcis->vec3_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
202616909a7fSStefano Zampini     } else {
202750efa1b5SStefano Zampini       ierr = MatMultTranspose(pcis->A_BI,pcis->vec1_B,pcis->vec3_D);CHKERRQ(ierr);
202816909a7fSStefano Zampini     }
202916909a7fSStefano Zampini   } else if (pcbddc->switch_static) { /* n_B is zero */
203016909a7fSStefano Zampini     Mat_IS *matis = (Mat_IS*)(pc->mat->data);
203116909a7fSStefano Zampini 
203216909a7fSStefano Zampini     if (!pcbddc->switch_static_change) {
203316909a7fSStefano Zampini       ierr = MatMultTranspose(matis->A,pcis->vec1_D,pcis->vec3_D);CHKERRQ(ierr);
203416909a7fSStefano Zampini     } else {
203516909a7fSStefano Zampini       ierr = MatMult(pcbddc->switch_static_change,pcis->vec1_D,pcis->vec1_N);CHKERRQ(ierr);
203616909a7fSStefano Zampini       ierr = MatMultTranspose(matis->A,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
203716909a7fSStefano Zampini       ierr = MatMultTranspose(pcbddc->switch_static_change,pcis->vec2_N,pcis->vec3_D);CHKERRQ(ierr);
203816909a7fSStefano Zampini     }
2039b097fa66SStefano Zampini   }
2040b0147a47SStefano Zampini   ierr = KSPSolveTranspose(pcbddc->ksp_D,pcis->vec3_D,pcis->vec4_D);CHKERRQ(ierr);
20418ae0ca82SStefano Zampini   if (!pcbddc->exact_dirichlet_trick_app && !pcbddc->benign_apply_coarse_only) {
2042b097fa66SStefano Zampini     if (pcbddc->switch_static) {
2043b097fa66SStefano Zampini       ierr = VecAXPBYPCZ(pcis->vec2_D,m_one,one,m_one,pcis->vec4_D,pcis->vec1_D);CHKERRQ(ierr);
2044b097fa66SStefano Zampini     } else {
2045b097fa66SStefano Zampini       ierr = VecAXPBY(pcis->vec2_D,m_one,m_one,pcis->vec4_D);CHKERRQ(ierr);
2046b097fa66SStefano Zampini     }
204750efa1b5SStefano Zampini     ierr = VecScatterBegin(pcis->global_to_D,pcis->vec2_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
204850efa1b5SStefano Zampini     ierr = VecScatterEnd(pcis->global_to_D,pcis->vec2_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
2049b097fa66SStefano Zampini   } else {
2050b097fa66SStefano Zampini     if (pcbddc->switch_static) {
2051b097fa66SStefano Zampini       ierr = VecAXPBY(pcis->vec4_D,one,m_one,pcis->vec1_D);CHKERRQ(ierr);
2052b097fa66SStefano Zampini     } else {
2053b097fa66SStefano Zampini       ierr = VecScale(pcis->vec4_D,m_one);CHKERRQ(ierr);
2054b097fa66SStefano Zampini     }
2055b097fa66SStefano Zampini     ierr = VecScatterBegin(pcis->global_to_D,pcis->vec4_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
2056b097fa66SStefano Zampini     ierr = VecScatterEnd(pcis->global_to_D,pcis->vec4_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
2057b097fa66SStefano Zampini   }
205827b6a85dSStefano Zampini   if (pcbddc->benign_have_null) { /* set p0 (computed in PCBDDCApplyInterface) */
2059537c1cdfSStefano Zampini     ierr = PCBDDCBenignGetOrSetP0(pc,z,PETSC_FALSE);CHKERRQ(ierr);
2060537c1cdfSStefano Zampini   }
20611dd7afcfSStefano Zampini   if (pcbddc->ChangeOfBasisMatrix) {
2062f913dca9SStefano Zampini     pcbddc->work_change = r;
20631dd7afcfSStefano Zampini     ierr = VecCopy(z,pcbddc->work_change);CHKERRQ(ierr);
20641dd7afcfSStefano Zampini     ierr = MatMult(pcbddc->ChangeOfBasisMatrix,pcbddc->work_change,z);CHKERRQ(ierr);
20651dd7afcfSStefano Zampini   }
206650efa1b5SStefano Zampini   PetscFunctionReturn(0);
206750efa1b5SStefano Zampini }
2068674ae819SStefano Zampini 
20699326c5c6Sstefano_zampini PetscErrorCode PCReset_BDDC(PC pc)
2070da1bb401SStefano Zampini {
2071da1bb401SStefano Zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
20729326c5c6Sstefano_zampini   PC_IS          *pcis = (PC_IS*)pc->data;
20739326c5c6Sstefano_zampini   KSP            kspD,kspR,kspC;
2074da1bb401SStefano Zampini   PetscErrorCode ierr;
2075da1bb401SStefano Zampini 
2076da1bb401SStefano Zampini   PetscFunctionBegin;
2077674ae819SStefano Zampini   /* free BDDC custom data  */
2078674ae819SStefano Zampini   ierr = PCBDDCResetCustomization(pc);CHKERRQ(ierr);
2079674ae819SStefano Zampini   /* destroy objects related to topography */
2080674ae819SStefano Zampini   ierr = PCBDDCResetTopography(pc);CHKERRQ(ierr);
208134a97f8cSStefano Zampini   /* destroy objects for scaling operator */
2082674ae819SStefano Zampini   ierr = PCBDDCScalingDestroy(pc);CHKERRQ(ierr);
2083674ae819SStefano Zampini   /* free solvers stuff */
2084674ae819SStefano Zampini   ierr = PCBDDCResetSolvers(pc);CHKERRQ(ierr);
208562a6ff1dSStefano Zampini   /* free global vectors needed in presolve */
208662a6ff1dSStefano Zampini   ierr = VecDestroy(&pcbddc->temp_solution);CHKERRQ(ierr);
208762a6ff1dSStefano Zampini   ierr = VecDestroy(&pcbddc->original_rhs);CHKERRQ(ierr);
20881dd7afcfSStefano Zampini   /* free data created by PCIS */
20891dd7afcfSStefano Zampini   ierr = PCISDestroy(pc);CHKERRQ(ierr);
20909326c5c6Sstefano_zampini 
20919326c5c6Sstefano_zampini   /* restore defaults */
20929326c5c6Sstefano_zampini   kspD = pcbddc->ksp_D;
20939326c5c6Sstefano_zampini   kspR = pcbddc->ksp_R;
20949326c5c6Sstefano_zampini   kspC = pcbddc->coarse_ksp;
20959326c5c6Sstefano_zampini   ierr = PetscMemzero(pc->data,sizeof(*pcbddc));CHKERRQ(ierr);
20969326c5c6Sstefano_zampini   pcis->n_neigh                     = -1;
20979326c5c6Sstefano_zampini   pcis->scaling_factor              = 1.0;
20989326c5c6Sstefano_zampini   pcis->reusesubmatrices            = PETSC_TRUE;
20999326c5c6Sstefano_zampini   pcbddc->use_local_adj             = PETSC_TRUE;
21009326c5c6Sstefano_zampini   pcbddc->use_vertices              = PETSC_TRUE;
21019326c5c6Sstefano_zampini   pcbddc->use_edges                 = PETSC_TRUE;
21029326c5c6Sstefano_zampini   pcbddc->symmetric_primal          = PETSC_TRUE;
21039326c5c6Sstefano_zampini   pcbddc->vertex_size               = 1;
21049326c5c6Sstefano_zampini   pcbddc->recompute_topography      = PETSC_TRUE;
21059326c5c6Sstefano_zampini   pcbddc->coarse_size               = -1;
21069326c5c6Sstefano_zampini   pcbddc->use_exact_dirichlet_trick = PETSC_TRUE;
21079326c5c6Sstefano_zampini   pcbddc->coarsening_ratio          = 8;
21089326c5c6Sstefano_zampini   pcbddc->coarse_eqs_per_proc       = 1;
21099326c5c6Sstefano_zampini   pcbddc->benign_compute_correction = PETSC_TRUE;
21109326c5c6Sstefano_zampini   pcbddc->nedfield                  = -1;
21119326c5c6Sstefano_zampini   pcbddc->nedglobal                 = PETSC_TRUE;
21129326c5c6Sstefano_zampini   pcbddc->graphmaxcount             = PETSC_MAX_INT;
21139326c5c6Sstefano_zampini   pcbddc->sub_schurs_layers         = -1;
21149326c5c6Sstefano_zampini   pcbddc->ksp_D                     = kspD;
21159326c5c6Sstefano_zampini   pcbddc->ksp_R                     = kspR;
21169326c5c6Sstefano_zampini   pcbddc->coarse_ksp                = kspC;
21179326c5c6Sstefano_zampini   PetscFunctionReturn(0);
21189326c5c6Sstefano_zampini }
21199326c5c6Sstefano_zampini 
21209326c5c6Sstefano_zampini PetscErrorCode PCDestroy_BDDC(PC pc)
21219326c5c6Sstefano_zampini {
21229326c5c6Sstefano_zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
21239326c5c6Sstefano_zampini   PetscErrorCode ierr;
21249326c5c6Sstefano_zampini 
21259326c5c6Sstefano_zampini   PetscFunctionBegin;
21269326c5c6Sstefano_zampini   ierr = PCReset_BDDC(pc);CHKERRQ(ierr);
21279326c5c6Sstefano_zampini   ierr = KSPDestroy(&pcbddc->ksp_D);CHKERRQ(ierr);
21289326c5c6Sstefano_zampini   ierr = KSPDestroy(&pcbddc->ksp_R);CHKERRQ(ierr);
21299326c5c6Sstefano_zampini   ierr = KSPDestroy(&pcbddc->coarse_ksp);CHKERRQ(ierr);
2130a13144ffSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDiscreteGradient_C",NULL);CHKERRQ(ierr);
2131a198735bSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDivergenceMat_C",NULL);CHKERRQ(ierr);
2132906d46d4SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetChangeOfBasisMat_C",NULL);CHKERRQ(ierr);
2133674ae819SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetPrimalVerticesLocalIS_C",NULL);CHKERRQ(ierr);
213430368db7SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetPrimalVerticesIS_C",NULL);CHKERRQ(ierr);
2135bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetCoarseningRatio_C",NULL);CHKERRQ(ierr);
21362b510759SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetLevel_C",NULL);CHKERRQ(ierr);
2137b8ffe317SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetUseExactDirichlet_C",NULL);CHKERRQ(ierr);
21382b510759SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetLevels_C",NULL);CHKERRQ(ierr);
2139bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDirichletBoundaries_C",NULL);CHKERRQ(ierr);
214082ba6b80SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDirichletBoundariesLocal_C",NULL);CHKERRQ(ierr);
2141bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetNeumannBoundaries_C",NULL);CHKERRQ(ierr);
214282ba6b80SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetNeumannBoundariesLocal_C",NULL);CHKERRQ(ierr);
2143bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetDirichletBoundaries_C",NULL);CHKERRQ(ierr);
214482ba6b80SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetDirichletBoundariesLocal_C",NULL);CHKERRQ(ierr);
2145bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetNeumannBoundaries_C",NULL);CHKERRQ(ierr);
2146785d1243SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetNeumannBoundariesLocal_C",NULL);CHKERRQ(ierr);
2147bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDofsSplitting_C",NULL);CHKERRQ(ierr);
214863602bcaSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDofsSplittingLocal_C",NULL);CHKERRQ(ierr);
2149bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetLocalAdjacencyGraph_C",NULL);CHKERRQ(ierr);
2150bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCCreateFETIDPOperators_C",NULL);CHKERRQ(ierr);
2151bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCMatFETIDPGetRHS_C",NULL);CHKERRQ(ierr);
2152bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCMatFETIDPGetSolution_C",NULL);CHKERRQ(ierr);
2153a06fd7f2SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCPreSolveChangeRHS_C",NULL);CHKERRQ(ierr);
2154ab8c8b98SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCSetCoordinates_C",NULL);CHKERRQ(ierr);
2155674ae819SStefano Zampini   ierr = PetscFree(pc->data);CHKERRQ(ierr);
2156da1bb401SStefano Zampini   PetscFunctionReturn(0);
2157da1bb401SStefano Zampini }
21581e6b0712SBarry Smith 
2159ab8c8b98SStefano Zampini static PetscErrorCode PCSetCoordinates_BDDC(PC pc, PetscInt dim, PetscInt nloc, PetscReal *coords)
2160ab8c8b98SStefano Zampini {
2161ab8c8b98SStefano Zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
2162ab8c8b98SStefano Zampini   PCBDDCGraph    mat_graph = pcbddc->mat_graph;
2163ab8c8b98SStefano Zampini   PetscErrorCode ierr;
2164ab8c8b98SStefano Zampini 
2165ab8c8b98SStefano Zampini   PetscFunctionBegin;
2166ab8c8b98SStefano Zampini   ierr = PetscFree(mat_graph->coords);CHKERRQ(ierr);
2167ab8c8b98SStefano Zampini   ierr = PetscMalloc1(nloc*dim,&mat_graph->coords);CHKERRQ(ierr);
2168ab8c8b98SStefano Zampini   ierr = PetscMemcpy(mat_graph->coords,coords,nloc*dim*sizeof(PetscReal));CHKERRQ(ierr);
2169ab8c8b98SStefano Zampini   mat_graph->cnloc = nloc;
2170ab8c8b98SStefano Zampini   mat_graph->cdim  = dim;
2171ab8c8b98SStefano Zampini   mat_graph->cloc  = PETSC_FALSE;
2172ab8c8b98SStefano Zampini   PetscFunctionReturn(0);
2173ab8c8b98SStefano Zampini }
2174ab8c8b98SStefano Zampini 
2175a06fd7f2SStefano Zampini static PetscErrorCode PCPreSolveChangeRHS_BDDC(PC pc, PetscBool* change)
2176a06fd7f2SStefano Zampini {
2177a06fd7f2SStefano Zampini   PetscFunctionBegin;
2178a06fd7f2SStefano Zampini   *change = PETSC_TRUE;
2179a06fd7f2SStefano Zampini   PetscFunctionReturn(0);
2180a06fd7f2SStefano Zampini }
2181a06fd7f2SStefano Zampini 
21823425bc38SStefano Zampini static PetscErrorCode PCBDDCMatFETIDPGetRHS_BDDC(Mat fetidp_mat, Vec standard_rhs, Vec fetidp_flux_rhs)
21833425bc38SStefano Zampini {
2184674ae819SStefano Zampini   FETIDPMat_ctx  mat_ctx;
2185266e20e9SStefano Zampini   Vec            work;
21863425bc38SStefano Zampini   PC_IS*         pcis;
21873425bc38SStefano Zampini   PC_BDDC*       pcbddc;
21883425bc38SStefano Zampini   PetscErrorCode ierr;
21890c7d97c5SJed Brown 
21903425bc38SStefano Zampini   PetscFunctionBegin;
21913425bc38SStefano Zampini   ierr = MatShellGetContext(fetidp_mat,&mat_ctx);CHKERRQ(ierr);
21923425bc38SStefano Zampini   pcis = (PC_IS*)mat_ctx->pc->data;
21933425bc38SStefano Zampini   pcbddc = (PC_BDDC*)mat_ctx->pc->data;
21943425bc38SStefano Zampini 
2195229984c5Sstefano_zampini   ierr = VecSet(fetidp_flux_rhs,0.0);CHKERRQ(ierr);
2196229984c5Sstefano_zampini   /* copy rhs since we may change it during PCPreSolve_BDDC */
2197229984c5Sstefano_zampini   if (!pcbddc->original_rhs) {
2198229984c5Sstefano_zampini     ierr = VecDuplicate(pcis->vec1_global,&pcbddc->original_rhs);CHKERRQ(ierr);
2199229984c5Sstefano_zampini   }
22006cc1294bSstefano_zampini   if (mat_ctx->rhs_flip) {
22016cc1294bSstefano_zampini     ierr = VecPointwiseMult(pcbddc->original_rhs,standard_rhs,mat_ctx->rhs_flip);CHKERRQ(ierr);
22026cc1294bSstefano_zampini   } else {
2203229984c5Sstefano_zampini     ierr = VecCopy(standard_rhs,pcbddc->original_rhs);CHKERRQ(ierr);
22046cc1294bSstefano_zampini   }
2205af140850Sstefano_zampini   if (mat_ctx->g2g_p) {
2206229984c5Sstefano_zampini     /* interface pressure rhs */
2207022d8d2bSstefano_zampini     ierr = VecScatterBegin(mat_ctx->g2g_p,fetidp_flux_rhs,pcbddc->original_rhs,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
2208022d8d2bSstefano_zampini     ierr = VecScatterEnd(mat_ctx->g2g_p,fetidp_flux_rhs,pcbddc->original_rhs,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
2209229984c5Sstefano_zampini     ierr = VecScatterBegin(mat_ctx->g2g_p,standard_rhs,fetidp_flux_rhs,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2210229984c5Sstefano_zampini     ierr = VecScatterEnd(mat_ctx->g2g_p,standard_rhs,fetidp_flux_rhs,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
22116cc1294bSstefano_zampini     if (!mat_ctx->rhs_flip) {
2212229984c5Sstefano_zampini       ierr = VecScale(fetidp_flux_rhs,-1.);CHKERRQ(ierr);
2213229984c5Sstefano_zampini     }
22146cc1294bSstefano_zampini   }
2215c08af4c6SStefano Zampini   /*
2216c08af4c6SStefano Zampini      change of basis for physical rhs if needed
2217c08af4c6SStefano Zampini      It also changes the rhs in case of dirichlet boundaries
2218c08af4c6SStefano Zampini   */
22193738a8e6SStefano Zampini   ierr = PCPreSolve_BDDC(mat_ctx->pc,NULL,pcbddc->original_rhs,NULL);CHKERRQ(ierr);
2220fc17d649SStefano Zampini   if (pcbddc->ChangeOfBasisMatrix) {
22213738a8e6SStefano Zampini     ierr = MatMultTranspose(pcbddc->ChangeOfBasisMatrix,pcbddc->original_rhs,pcbddc->work_change);CHKERRQ(ierr);
22223738a8e6SStefano Zampini     work = pcbddc->work_change;
2223fc17d649SStefano Zampini    } else {
22243738a8e6SStefano Zampini     work = pcbddc->original_rhs;
2225fc17d649SStefano Zampini   }
22263425bc38SStefano Zampini   /* store vectors for computation of fetidp final solution */
2227266e20e9SStefano Zampini   ierr = VecScatterBegin(pcis->global_to_D,work,mat_ctx->temp_solution_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2228266e20e9SStefano Zampini   ierr = VecScatterEnd(pcis->global_to_D,work,mat_ctx->temp_solution_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2229fb223d50SStefano Zampini   /* scale rhs since it should be unassembled */
2230fb223d50SStefano Zampini   /* TODO use counter scaling? (also below) */
2231266e20e9SStefano Zampini   ierr = VecScatterBegin(pcis->global_to_B,work,mat_ctx->temp_solution_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2232266e20e9SStefano Zampini   ierr = VecScatterEnd(pcis->global_to_B,work,mat_ctx->temp_solution_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2233674ae819SStefano Zampini   /* Apply partition of unity */
22343425bc38SStefano Zampini   ierr = VecPointwiseMult(mat_ctx->temp_solution_B,pcis->D,mat_ctx->temp_solution_B);CHKERRQ(ierr);
2235266e20e9SStefano Zampini   /* ierr = PCBDDCScalingRestriction(mat_ctx->pc,work,mat_ctx->temp_solution_B);CHKERRQ(ierr); */
22368eeda7d8SStefano Zampini   if (!pcbddc->switch_static) {
22373425bc38SStefano Zampini     /* compute partially subassembled Schur complement right-hand side */
22383425bc38SStefano Zampini     ierr = KSPSolve(pcbddc->ksp_D,mat_ctx->temp_solution_D,pcis->vec1_D);CHKERRQ(ierr);
22393425bc38SStefano Zampini     ierr = MatMult(pcis->A_BI,pcis->vec1_D,pcis->vec1_B);CHKERRQ(ierr);
22403425bc38SStefano Zampini     ierr = VecAXPY(mat_ctx->temp_solution_B,-1.0,pcis->vec1_B);CHKERRQ(ierr);
2241266e20e9SStefano Zampini     ierr = VecSet(work,0.0);CHKERRQ(ierr);
2242266e20e9SStefano Zampini     ierr = VecScatterBegin(pcis->global_to_B,mat_ctx->temp_solution_B,work,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
2243266e20e9SStefano Zampini     ierr = VecScatterEnd(pcis->global_to_B,mat_ctx->temp_solution_B,work,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
2244266e20e9SStefano Zampini     /* ierr = PCBDDCScalingRestriction(mat_ctx->pc,work,mat_ctx->temp_solution_B);CHKERRQ(ierr); */
2245266e20e9SStefano Zampini     ierr = VecScatterBegin(pcis->global_to_B,work,mat_ctx->temp_solution_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2246266e20e9SStefano Zampini     ierr = VecScatterEnd(pcis->global_to_B,work,mat_ctx->temp_solution_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
22473425bc38SStefano Zampini     ierr = VecPointwiseMult(mat_ctx->temp_solution_B,pcis->D,mat_ctx->temp_solution_B);CHKERRQ(ierr);
22483425bc38SStefano Zampini   }
22493425bc38SStefano Zampini   /* BDDC rhs */
22503425bc38SStefano Zampini   ierr = VecCopy(mat_ctx->temp_solution_B,pcis->vec1_B);CHKERRQ(ierr);
22518eeda7d8SStefano Zampini   if (pcbddc->switch_static) {
22523425bc38SStefano Zampini     ierr = VecCopy(mat_ctx->temp_solution_D,pcis->vec1_D);CHKERRQ(ierr);
22533425bc38SStefano Zampini   }
22543425bc38SStefano Zampini   /* apply BDDC */
2255229984c5Sstefano_zampini   ierr = PetscMemzero(pcbddc->benign_p0,pcbddc->benign_n*sizeof(PetscScalar));CHKERRQ(ierr);
2256dc359a40SStefano Zampini   ierr = PCBDDCApplyInterfacePreconditioner(mat_ctx->pc,PETSC_FALSE);CHKERRQ(ierr);
2257266e20e9SStefano Zampini   ierr = PetscMemzero(pcbddc->benign_p0,pcbddc->benign_n*sizeof(PetscScalar));CHKERRQ(ierr);
2258229984c5Sstefano_zampini 
22593425bc38SStefano Zampini   /* Application of B_delta and assembling of rhs for fetidp fluxes */
22603425bc38SStefano Zampini   ierr = MatMult(mat_ctx->B_delta,pcis->vec1_B,mat_ctx->lambda_local);CHKERRQ(ierr);
22613425bc38SStefano Zampini   ierr = VecScatterBegin(mat_ctx->l2g_lambda,mat_ctx->lambda_local,fetidp_flux_rhs,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
22623425bc38SStefano Zampini   ierr = VecScatterEnd(mat_ctx->l2g_lambda,mat_ctx->lambda_local,fetidp_flux_rhs,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2263229984c5Sstefano_zampini   /* Add contribution to interface pressures */
2264229984c5Sstefano_zampini   if (mat_ctx->l2g_p) {
2265229984c5Sstefano_zampini     ierr = MatMult(mat_ctx->B_BB,pcis->vec1_B,mat_ctx->vP);CHKERRQ(ierr);
2266229984c5Sstefano_zampini     if (pcbddc->switch_static) {
2267229984c5Sstefano_zampini       ierr = MatMultAdd(mat_ctx->B_BI,pcis->vec1_D,mat_ctx->vP,mat_ctx->vP);CHKERRQ(ierr);
2268229984c5Sstefano_zampini     }
2269229984c5Sstefano_zampini     ierr = VecScatterBegin(mat_ctx->l2g_p,mat_ctx->vP,fetidp_flux_rhs,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2270229984c5Sstefano_zampini     ierr = VecScatterEnd(mat_ctx->l2g_p,mat_ctx->vP,fetidp_flux_rhs,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2271229984c5Sstefano_zampini   }
22723425bc38SStefano Zampini   PetscFunctionReturn(0);
22733425bc38SStefano Zampini }
22741e6b0712SBarry Smith 
22753425bc38SStefano Zampini /*@
22760f202f7eSStefano Zampini  PCBDDCMatFETIDPGetRHS - Compute the right-hand side for FETI-DP linear system using the physical right-hand side
22773425bc38SStefano Zampini 
22783425bc38SStefano Zampini    Collective
22793425bc38SStefano Zampini 
22803425bc38SStefano Zampini    Input Parameters:
22810f202f7eSStefano Zampini +  fetidp_mat      - the FETI-DP matrix object obtained by a call to PCBDDCCreateFETIDPOperators
22820f202f7eSStefano Zampini -  standard_rhs    - the right-hand side of the original linear system
22833425bc38SStefano Zampini 
22843425bc38SStefano Zampini    Output Parameters:
22850f202f7eSStefano Zampini .  fetidp_flux_rhs - the right-hand side for the FETI-DP linear system
22863425bc38SStefano Zampini 
22873425bc38SStefano Zampini    Level: developer
22883425bc38SStefano Zampini 
22893425bc38SStefano Zampini    Notes:
22903425bc38SStefano Zampini 
22910f202f7eSStefano Zampini .seealso: PCBDDC, PCBDDCCreateFETIDPOperators, PCBDDCMatFETIDPGetSolution
22923425bc38SStefano Zampini @*/
22933425bc38SStefano Zampini PetscErrorCode PCBDDCMatFETIDPGetRHS(Mat fetidp_mat, Vec standard_rhs, Vec fetidp_flux_rhs)
22943425bc38SStefano Zampini {
2295674ae819SStefano Zampini   FETIDPMat_ctx  mat_ctx;
22963425bc38SStefano Zampini   PetscErrorCode ierr;
22973425bc38SStefano Zampini 
22983425bc38SStefano Zampini   PetscFunctionBegin;
2299266e20e9SStefano Zampini   PetscValidHeaderSpecific(fetidp_mat,MAT_CLASSID,1);
2300266e20e9SStefano Zampini   PetscValidHeaderSpecific(standard_rhs,VEC_CLASSID,2);
2301266e20e9SStefano Zampini   PetscValidHeaderSpecific(fetidp_flux_rhs,VEC_CLASSID,3);
23023425bc38SStefano Zampini   ierr = MatShellGetContext(fetidp_mat,&mat_ctx);CHKERRQ(ierr);
2303163d334eSBarry Smith   ierr = PetscUseMethod(mat_ctx->pc,"PCBDDCMatFETIDPGetRHS_C",(Mat,Vec,Vec),(fetidp_mat,standard_rhs,fetidp_flux_rhs));CHKERRQ(ierr);
23043425bc38SStefano Zampini   PetscFunctionReturn(0);
23053425bc38SStefano Zampini }
23061e6b0712SBarry Smith 
23073425bc38SStefano Zampini static PetscErrorCode PCBDDCMatFETIDPGetSolution_BDDC(Mat fetidp_mat, Vec fetidp_flux_sol, Vec standard_sol)
23083425bc38SStefano Zampini {
2309674ae819SStefano Zampini   FETIDPMat_ctx  mat_ctx;
23103425bc38SStefano Zampini   PC_IS*         pcis;
23113425bc38SStefano Zampini   PC_BDDC*       pcbddc;
23123425bc38SStefano Zampini   PetscErrorCode ierr;
2313229984c5Sstefano_zampini   Vec            work;
23143425bc38SStefano Zampini 
23153425bc38SStefano Zampini   PetscFunctionBegin;
23163425bc38SStefano Zampini   ierr = MatShellGetContext(fetidp_mat,&mat_ctx);CHKERRQ(ierr);
23173425bc38SStefano Zampini   pcis = (PC_IS*)mat_ctx->pc->data;
23183425bc38SStefano Zampini   pcbddc = (PC_BDDC*)mat_ctx->pc->data;
23193425bc38SStefano Zampini 
23203425bc38SStefano Zampini   /* apply B_delta^T */
2321af140850Sstefano_zampini   ierr = VecSet(pcis->vec1_B,0.);CHKERRQ(ierr);
23223425bc38SStefano Zampini   ierr = VecScatterBegin(mat_ctx->l2g_lambda,fetidp_flux_sol,mat_ctx->lambda_local,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
23233425bc38SStefano Zampini   ierr = VecScatterEnd(mat_ctx->l2g_lambda,fetidp_flux_sol,mat_ctx->lambda_local,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
23243425bc38SStefano Zampini   ierr = MatMultTranspose(mat_ctx->B_delta,mat_ctx->lambda_local,pcis->vec1_B);CHKERRQ(ierr);
2325229984c5Sstefano_zampini   if (mat_ctx->l2g_p) {
2326229984c5Sstefano_zampini     ierr = VecScatterBegin(mat_ctx->l2g_p,fetidp_flux_sol,mat_ctx->vP,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
2327229984c5Sstefano_zampini     ierr = VecScatterEnd(mat_ctx->l2g_p,fetidp_flux_sol,mat_ctx->vP,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
2328229984c5Sstefano_zampini     ierr = MatMultAdd(mat_ctx->Bt_BB,mat_ctx->vP,pcis->vec1_B,pcis->vec1_B);CHKERRQ(ierr);
2329229984c5Sstefano_zampini   }
2330229984c5Sstefano_zampini 
23313425bc38SStefano Zampini   /* compute rhs for BDDC application */
23323425bc38SStefano Zampini   ierr = VecAYPX(pcis->vec1_B,-1.0,mat_ctx->temp_solution_B);CHKERRQ(ierr);
23338eeda7d8SStefano Zampini   if (pcbddc->switch_static) {
23343425bc38SStefano Zampini     ierr = VecCopy(mat_ctx->temp_solution_D,pcis->vec1_D);CHKERRQ(ierr);
2335229984c5Sstefano_zampini     if (mat_ctx->l2g_p) {
2336229984c5Sstefano_zampini       ierr = VecScale(mat_ctx->vP,-1.);CHKERRQ(ierr);
2337229984c5Sstefano_zampini       ierr = MatMultAdd(mat_ctx->Bt_BI,mat_ctx->vP,pcis->vec1_D,pcis->vec1_D);CHKERRQ(ierr);
23383425bc38SStefano Zampini     }
2339229984c5Sstefano_zampini   }
2340229984c5Sstefano_zampini 
23413425bc38SStefano Zampini   /* apply BDDC */
2342229984c5Sstefano_zampini   ierr = PetscMemzero(pcbddc->benign_p0,pcbddc->benign_n*sizeof(PetscScalar));CHKERRQ(ierr);
2343dc359a40SStefano Zampini   ierr = PCBDDCApplyInterfacePreconditioner(mat_ctx->pc,PETSC_FALSE);CHKERRQ(ierr);
2344229984c5Sstefano_zampini 
2345229984c5Sstefano_zampini   /* put values into global vector */
2346af140850Sstefano_zampini   if (pcbddc->ChangeOfBasisMatrix) work = pcbddc->work_change;
2347af140850Sstefano_zampini   else work = standard_sol;
2348229984c5Sstefano_zampini   ierr = VecScatterBegin(pcis->global_to_B,pcis->vec1_B,work,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
2349229984c5Sstefano_zampini   ierr = VecScatterEnd(pcis->global_to_B,pcis->vec1_B,work,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
23508eeda7d8SStefano Zampini   if (!pcbddc->switch_static) {
23513425bc38SStefano Zampini     /* compute values into the interior if solved for the partially subassembled Schur complement */
23523425bc38SStefano Zampini     ierr = MatMult(pcis->A_IB,pcis->vec1_B,pcis->vec1_D);CHKERRQ(ierr);
235300f6b531SStefano Zampini     ierr = VecAYPX(pcis->vec1_D,-1.0,mat_ctx->temp_solution_D);CHKERRQ(ierr);
235400f6b531SStefano Zampini     ierr = KSPSolve(pcbddc->ksp_D,pcis->vec1_D,pcis->vec1_D);CHKERRQ(ierr);
23553425bc38SStefano Zampini   }
2356229984c5Sstefano_zampini 
2357229984c5Sstefano_zampini   ierr = VecScatterBegin(pcis->global_to_D,pcis->vec1_D,work,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
2358229984c5Sstefano_zampini   ierr = VecScatterEnd(pcis->global_to_D,pcis->vec1_D,work,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
2359266e20e9SStefano Zampini   /* add p0 solution to final solution */
2360229984c5Sstefano_zampini   ierr = PCBDDCBenignGetOrSetP0(mat_ctx->pc,work,PETSC_FALSE);CHKERRQ(ierr);
2361fc17d649SStefano Zampini   if (pcbddc->ChangeOfBasisMatrix) {
2362af140850Sstefano_zampini     ierr = MatMult(pcbddc->ChangeOfBasisMatrix,work,standard_sol);CHKERRQ(ierr);
2363fc17d649SStefano Zampini   }
2364af140850Sstefano_zampini   ierr = PCPostSolve_BDDC(mat_ctx->pc,NULL,NULL,standard_sol);CHKERRQ(ierr);
2365af140850Sstefano_zampini   if (mat_ctx->g2g_p) {
2366229984c5Sstefano_zampini     ierr = VecScatterBegin(mat_ctx->g2g_p,fetidp_flux_sol,standard_sol,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
2367229984c5Sstefano_zampini     ierr = VecScatterEnd(mat_ctx->g2g_p,fetidp_flux_sol,standard_sol,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
2368229984c5Sstefano_zampini   }
23693425bc38SStefano Zampini   PetscFunctionReturn(0);
23703425bc38SStefano Zampini }
23711e6b0712SBarry Smith 
23723425bc38SStefano Zampini /*@
23730f202f7eSStefano Zampini  PCBDDCMatFETIDPGetSolution - Compute the physical solution using the solution of the FETI-DP linear system
23743425bc38SStefano Zampini 
23753425bc38SStefano Zampini    Collective
23763425bc38SStefano Zampini 
23773425bc38SStefano Zampini    Input Parameters:
23780f202f7eSStefano Zampini +  fetidp_mat      - the FETI-DP matrix obtained by a call to PCBDDCCreateFETIDPOperators
23790f202f7eSStefano Zampini -  fetidp_flux_sol - the solution of the FETI-DP linear system
23803425bc38SStefano Zampini 
23813425bc38SStefano Zampini    Output Parameters:
23820f202f7eSStefano Zampini .  standard_sol    - the solution defined on the physical domain
23833425bc38SStefano Zampini 
23843425bc38SStefano Zampini    Level: developer
23853425bc38SStefano Zampini 
23863425bc38SStefano Zampini    Notes:
23873425bc38SStefano Zampini 
23880f202f7eSStefano Zampini .seealso: PCBDDC, PCBDDCCreateFETIDPOperators, PCBDDCMatFETIDPGetRHS
23893425bc38SStefano Zampini @*/
23903425bc38SStefano Zampini PetscErrorCode PCBDDCMatFETIDPGetSolution(Mat fetidp_mat, Vec fetidp_flux_sol, Vec standard_sol)
23913425bc38SStefano Zampini {
2392674ae819SStefano Zampini   FETIDPMat_ctx  mat_ctx;
23933425bc38SStefano Zampini   PetscErrorCode ierr;
23943425bc38SStefano Zampini 
23953425bc38SStefano Zampini   PetscFunctionBegin;
2396266e20e9SStefano Zampini   PetscValidHeaderSpecific(fetidp_mat,MAT_CLASSID,1);
2397266e20e9SStefano Zampini   PetscValidHeaderSpecific(fetidp_flux_sol,VEC_CLASSID,2);
2398266e20e9SStefano Zampini   PetscValidHeaderSpecific(standard_sol,VEC_CLASSID,3);
23993425bc38SStefano Zampini   ierr = MatShellGetContext(fetidp_mat,&mat_ctx);CHKERRQ(ierr);
2400163d334eSBarry Smith   ierr = PetscUseMethod(mat_ctx->pc,"PCBDDCMatFETIDPGetSolution_C",(Mat,Vec,Vec),(fetidp_mat,fetidp_flux_sol,standard_sol));CHKERRQ(ierr);
24013425bc38SStefano Zampini   PetscFunctionReturn(0);
24023425bc38SStefano Zampini }
24031e6b0712SBarry Smith 
2404547c9a8eSstefano_zampini static PetscErrorCode PCBDDCCreateFETIDPOperators_BDDC(PC pc, PetscBool fully_redundant, const char* prefix, Mat *fetidp_mat, PC *fetidp_pc)
24053425bc38SStefano Zampini {
2406674ae819SStefano Zampini 
2407674ae819SStefano Zampini   FETIDPMat_ctx  fetidpmat_ctx;
24083425bc38SStefano Zampini   Mat            newmat;
2409674ae819SStefano Zampini   FETIDPPC_ctx   fetidppc_ctx;
24103425bc38SStefano Zampini   PC             newpc;
2411ce94432eSBarry Smith   MPI_Comm       comm;
24123425bc38SStefano Zampini   PetscErrorCode ierr;
24133425bc38SStefano Zampini 
24143425bc38SStefano Zampini   PetscFunctionBegin;
2415ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)pc,&comm);CHKERRQ(ierr);
24163425bc38SStefano Zampini   /* FETIDP linear matrix */
24173425bc38SStefano Zampini   ierr = PCBDDCCreateFETIDPMatContext(pc,&fetidpmat_ctx);CHKERRQ(ierr);
24181720468bSStefano Zampini   fetidpmat_ctx->fully_redundant = fully_redundant;
24193425bc38SStefano Zampini   ierr = PCBDDCSetupFETIDPMatContext(fetidpmat_ctx);CHKERRQ(ierr);
2420a5bb87b3Sstefano_zampini   ierr = MatCreateShell(comm,fetidpmat_ctx->n,fetidpmat_ctx->n,fetidpmat_ctx->N,fetidpmat_ctx->N,fetidpmat_ctx,&newmat);CHKERRQ(ierr);
24213425bc38SStefano Zampini   ierr = MatShellSetOperation(newmat,MATOP_MULT,(void (*)(void))FETIDPMatMult);CHKERRQ(ierr);
2422edf7251bSStefano Zampini   ierr = MatShellSetOperation(newmat,MATOP_MULT_TRANSPOSE,(void (*)(void))FETIDPMatMultTranspose);CHKERRQ(ierr);
24233425bc38SStefano Zampini   ierr = MatShellSetOperation(newmat,MATOP_DESTROY,(void (*)(void))PCBDDCDestroyFETIDPMat);CHKERRQ(ierr);
2424547c9a8eSstefano_zampini   ierr = MatSetOptionsPrefix(newmat,prefix);CHKERRQ(ierr);
2425547c9a8eSstefano_zampini   ierr = MatAppendOptionsPrefix(newmat,"fetidp_");CHKERRQ(ierr);
24263425bc38SStefano Zampini   ierr = MatSetUp(newmat);CHKERRQ(ierr);
24273425bc38SStefano Zampini   /* FETIDP preconditioner */
24283425bc38SStefano Zampini   ierr = PCBDDCCreateFETIDPPCContext(pc,&fetidppc_ctx);CHKERRQ(ierr);
24293425bc38SStefano Zampini   ierr = PCBDDCSetupFETIDPPCContext(newmat,fetidppc_ctx);CHKERRQ(ierr);
24303425bc38SStefano Zampini   ierr = PCCreate(comm,&newpc);CHKERRQ(ierr);
2431e1214c54Sstefano_zampini   ierr = PCSetOperators(newpc,newmat,newmat);CHKERRQ(ierr);
2432e1214c54Sstefano_zampini   ierr = PCSetOptionsPrefix(newpc,prefix);CHKERRQ(ierr);
2433e1214c54Sstefano_zampini   ierr = PCAppendOptionsPrefix(newpc,"fetidp_");CHKERRQ(ierr);
2434e1214c54Sstefano_zampini   if (!fetidpmat_ctx->l2g_lambda_only) {
24353425bc38SStefano Zampini     ierr = PCSetType(newpc,PCSHELL);CHKERRQ(ierr);
24363425bc38SStefano Zampini     ierr = PCShellSetContext(newpc,fetidppc_ctx);CHKERRQ(ierr);
24373425bc38SStefano Zampini     ierr = PCShellSetApply(newpc,FETIDPPCApply);CHKERRQ(ierr);
2438edf7251bSStefano Zampini     ierr = PCShellSetApplyTranspose(newpc,FETIDPPCApplyTranspose);CHKERRQ(ierr);
2439c45b8d2dSstefano_zampini     ierr = PCShellSetView(newpc,FETIDPPCView);CHKERRQ(ierr);
24403425bc38SStefano Zampini     ierr = PCShellSetDestroy(newpc,PCBDDCDestroyFETIDPPC);CHKERRQ(ierr);
2441e1214c54Sstefano_zampini   } else {
2442e1214c54Sstefano_zampini     KSP      *ksps;
2443e1214c54Sstefano_zampini     PC       lagpc;
2444e1214c54Sstefano_zampini     Mat      M,AM,PM;
2445e1214c54Sstefano_zampini     PetscInt nn;
2446e1214c54Sstefano_zampini 
2447e1214c54Sstefano_zampini     ierr = PetscObjectQuery((PetscObject)pc,"__KSPFETIDP_PPmat",(PetscObject*)&M);CHKERRQ(ierr);
2448e1214c54Sstefano_zampini     ierr = PCSetType(newpc,PCFIELDSPLIT);CHKERRQ(ierr);
2449e1214c54Sstefano_zampini     ierr = PCFieldSplitSetIS(newpc,"lag",fetidpmat_ctx->lagrange);CHKERRQ(ierr);
2450e1214c54Sstefano_zampini     ierr = PCFieldSplitSetIS(newpc,"p",fetidpmat_ctx->pressure);CHKERRQ(ierr);
2451e1214c54Sstefano_zampini     ierr = PCFieldSplitSetType(newpc,PC_COMPOSITE_SCHUR);CHKERRQ(ierr);
245240c75d76SStefano Zampini     ierr = PCFieldSplitSetSchurFactType(newpc,PC_FIELDSPLIT_SCHUR_FACT_DIAG);CHKERRQ(ierr);
2453e1214c54Sstefano_zampini     ierr = PCFieldSplitSetSchurPre(newpc,PC_FIELDSPLIT_SCHUR_PRE_USER,M);CHKERRQ(ierr);
2454c096484dSStefano Zampini     ierr = PCFieldSplitSetSchurScale(newpc,1.0);CHKERRQ(ierr);
2455e1214c54Sstefano_zampini     ierr = PCSetFromOptions(newpc);CHKERRQ(ierr);
2456e1214c54Sstefano_zampini     ierr = PCSetUp(newpc);CHKERRQ(ierr);
2457e1214c54Sstefano_zampini 
2458e1214c54Sstefano_zampini     /* set the solver for the (0,0) block */
245940c75d76SStefano Zampini     ierr = PCFieldSplitGetSubKSP(newpc,&nn,&ksps);CHKERRQ(ierr);
2460e1214c54Sstefano_zampini     ierr = PCCreate(comm,&lagpc);CHKERRQ(ierr);
2461e1214c54Sstefano_zampini     ierr = PCSetType(lagpc,PCSHELL);CHKERRQ(ierr);
2462e1214c54Sstefano_zampini     ierr = KSPGetOperators(ksps[0],&AM,&PM);CHKERRQ(ierr);
2463e1214c54Sstefano_zampini     ierr = PCSetOperators(lagpc,AM,PM);CHKERRQ(ierr);
2464e1214c54Sstefano_zampini     ierr = PCShellSetContext(lagpc,fetidppc_ctx);CHKERRQ(ierr);
2465e1214c54Sstefano_zampini     ierr = PCShellSetApply(lagpc,FETIDPPCApply);CHKERRQ(ierr);
2466e1214c54Sstefano_zampini     ierr = PCShellSetApplyTranspose(lagpc,FETIDPPCApplyTranspose);CHKERRQ(ierr);
2467e1214c54Sstefano_zampini     ierr = PCShellSetView(lagpc,FETIDPPCView);CHKERRQ(ierr);
2468e1214c54Sstefano_zampini     ierr = PCShellSetDestroy(lagpc,PCBDDCDestroyFETIDPPC);CHKERRQ(ierr);
2469e1214c54Sstefano_zampini     ierr = KSPSetPC(ksps[0],lagpc);CHKERRQ(ierr);
2470e1214c54Sstefano_zampini     ierr = PCDestroy(&lagpc);CHKERRQ(ierr);
2471e1214c54Sstefano_zampini     ierr = PetscFree(ksps);CHKERRQ(ierr);
2472e1214c54Sstefano_zampini   }
24733425bc38SStefano Zampini   /* return pointers for objects created */
24743425bc38SStefano Zampini   *fetidp_mat = newmat;
24753425bc38SStefano Zampini   *fetidp_pc = newpc;
24763425bc38SStefano Zampini   PetscFunctionReturn(0);
24773425bc38SStefano Zampini }
24781e6b0712SBarry Smith 
247994ef8ddeSSatish Balay /*@C
24800f202f7eSStefano Zampini  PCBDDCCreateFETIDPOperators - Create FETI-DP operators
24813425bc38SStefano Zampini 
24823425bc38SStefano Zampini    Collective
24833425bc38SStefano Zampini 
24843425bc38SStefano Zampini    Input Parameters:
24851720468bSStefano Zampini +  pc - the BDDC preconditioning context (setup should have been called before)
2486547c9a8eSstefano_zampini .  fully_redundant - true for a fully redundant set of Lagrange multipliers
2487547c9a8eSstefano_zampini -  prefix - optional options database prefix for the objects to be created (can be NULL)
248828509bceSStefano Zampini 
248928509bceSStefano Zampini    Output Parameters:
24900f202f7eSStefano Zampini +  fetidp_mat - shell FETI-DP matrix object
24910f202f7eSStefano Zampini -  fetidp_pc  - shell Dirichlet preconditioner for FETI-DP matrix
249228509bceSStefano Zampini 
24933425bc38SStefano Zampini    Level: developer
24943425bc38SStefano Zampini 
24953425bc38SStefano Zampini    Notes:
24960f202f7eSStefano Zampini      Currently the only operations provided for FETI-DP matrix are MatMult and MatMultTranspose
24973425bc38SStefano Zampini 
24980f202f7eSStefano Zampini .seealso: PCBDDC, PCBDDCMatFETIDPGetRHS, PCBDDCMatFETIDPGetSolution
24993425bc38SStefano Zampini @*/
2500547c9a8eSstefano_zampini PetscErrorCode PCBDDCCreateFETIDPOperators(PC pc, PetscBool fully_redundant, const char *prefix, Mat *fetidp_mat, PC *fetidp_pc)
25013425bc38SStefano Zampini {
25023425bc38SStefano Zampini   PetscErrorCode ierr;
25033425bc38SStefano Zampini 
25043425bc38SStefano Zampini   PetscFunctionBegin;
25053425bc38SStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
25063425bc38SStefano Zampini   if (pc->setupcalled) {
2507547c9a8eSstefano_zampini     ierr = PetscUseMethod(pc,"PCBDDCCreateFETIDPOperators_C",(PC,PetscBool,const char*,Mat*,PC*),(pc,fully_redundant,prefix,fetidp_mat,fetidp_pc));CHKERRQ(ierr);
25084247aa23Sstefano_zampini   } else SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"You must call PCSetup_BDDC() first \n");
25093425bc38SStefano Zampini   PetscFunctionReturn(0);
25103425bc38SStefano Zampini }
25110c7d97c5SJed Brown /* -------------------------------------------------------------------------- */
2512da1bb401SStefano Zampini /*MC
2513da1bb401SStefano Zampini    PCBDDC - Balancing Domain Decomposition by Constraints.
25140c7d97c5SJed Brown 
251528509bceSStefano Zampini    An implementation of the BDDC preconditioner based on
251628509bceSStefano Zampini 
251728509bceSStefano Zampini .vb
251828509bceSStefano Zampini    [1] C. R. Dohrmann. "An approximate BDDC preconditioner", Numerical Linear Algebra with Applications Volume 14, Issue 2, pages 149-168, March 2007
251928509bceSStefano Zampini    [2] A. Klawonn and O. B. Widlund. "Dual-Primal FETI Methods for Linear Elasticity", http://cs.nyu.edu/csweb/Research/TechReports/TR2004-855/TR2004-855.pdf
252028509bceSStefano Zampini    [3] J. Mandel, B. Sousedik, C. R. Dohrmann. "Multispace and Multilevel BDDC", http://arxiv.org/abs/0712.3977
25210f202f7eSStefano Zampini    [4] C. Pechstein and C. R. Dohrmann. "Modern domain decomposition methods BDDC, deluxe scaling, and an algebraic approach", Seminar talk, Linz, December 2013, http://people.ricam.oeaw.ac.at/c.pechstein/pechstein-bddc2013.pdf
252228509bceSStefano Zampini .ve
252328509bceSStefano Zampini 
252428509bceSStefano Zampini    The matrix to be preconditioned (Pmat) must be of type MATIS.
252528509bceSStefano Zampini 
25260f202f7eSStefano Zampini    Currently works with MATIS matrices with local matrices of type MATSEQAIJ, MATSEQBAIJ or MATSEQSBAIJ, either with real or complex numbers.
252728509bceSStefano Zampini 
252828509bceSStefano Zampini    It also works with unsymmetric and indefinite problems.
252928509bceSStefano Zampini 
2530b6fdb6dfSStefano Zampini    Unlike 'conventional' interface preconditioners, PCBDDC iterates over all degrees of freedom, not just those on the interface. This allows the use of approximate solvers on the subdomains.
2531b6fdb6dfSStefano Zampini 
2532c7017625SStefano Zampini    Approximate local solvers are automatically adapted (see [1]) if the user has attached a nullspace object to the subdomain matrices, and informed BDDC of using approximate solvers (via the command line).
253328509bceSStefano Zampini 
25340f202f7eSStefano Zampini    Boundary nodes are split in vertices, edges and faces classes using information from the local to global mapping of dofs and the local connectivity graph of nodes. The latter can be customized by using PCBDDCSetLocalAdjacencyGraph()
253530368db7SStefano Zampini    Additional information on dofs can be provided by using PCBDDCSetDofsSplitting(), PCBDDCSetDirichletBoundaries(), PCBDDCSetNeumannBoundaries(), and PCBDDCSetPrimalVerticesIS() and their local counterparts.
253628509bceSStefano Zampini 
25370f202f7eSStefano Zampini    Constraints can be customized by attaching a MatNullSpace object to the MATIS matrix via MatSetNearNullSpace(). Non-singular modes are retained via SVD.
253828509bceSStefano Zampini 
25390f202f7eSStefano Zampini    Change of basis is performed similarly to [2] when requested. When more than one constraint is present on a single connected component (i.e. an edge or a face), a robust method based on local QR factorizations is used.
25400f202f7eSStefano Zampini    User defined change of basis can be passed to PCBDDC by using PCBDDCSetChangeOfBasisMat()
254128509bceSStefano Zampini 
25420f202f7eSStefano Zampini    The PETSc implementation also supports multilevel BDDC [3]. Coarse grids are partitioned using a MatPartitioning object.
254328509bceSStefano Zampini 
2544df4d28bfSStefano Zampini    Adaptive selection of primal constraints [4] is supported for SPD systems with high-contrast in the coefficients if MUMPS or MKL_PARDISO are present. Future versions of the code will also consider using PASTIX.
254528509bceSStefano Zampini 
25460f202f7eSStefano Zampini    An experimental interface to the FETI-DP method is available. FETI-DP operators could be created using PCBDDCCreateFETIDPOperators(). A stand-alone class for the FETI-DP method will be provided in the next releases.
25470f202f7eSStefano Zampini    Deluxe scaling is not supported yet for FETI-DP.
25480f202f7eSStefano Zampini 
25490f202f7eSStefano Zampini    Options Database Keys (some of them, run with -h for a complete list):
25500f202f7eSStefano Zampini 
25510f202f7eSStefano Zampini .    -pc_bddc_use_vertices <true> - use or not vertices in primal space
25520f202f7eSStefano Zampini .    -pc_bddc_use_edges <true> - use or not edges in primal space
25530f202f7eSStefano Zampini .    -pc_bddc_use_faces <false> - use or not faces in primal space
25540f202f7eSStefano Zampini .    -pc_bddc_symmetric <true> - symmetric computation of primal basis functions. Specify false for unsymmetric problems
25550f202f7eSStefano Zampini .    -pc_bddc_use_change_of_basis <false> - use change of basis approach (on edges only)
25560f202f7eSStefano Zampini .    -pc_bddc_use_change_on_faces <false> - use change of basis approach on faces if change of basis has been requested
25570f202f7eSStefano Zampini .    -pc_bddc_switch_static <false> - switches from M_2 (default) to M_3 operator (see reference article [1])
255828509bceSStefano Zampini .    -pc_bddc_levels <0> - maximum number of levels for multilevel
25590f202f7eSStefano Zampini .    -pc_bddc_coarsening_ratio <8> - number of subdomains which will be aggregated together at the coarser level (e.g. H/h ratio at the coarser level, significative only in the multilevel case)
25605459c157SBarry Smith .    -pc_bddc_coarse_redistribute <0> - size of a subset of processors where the coarse problem will be remapped (the value is ignored if not at the coarsest level)
25610f202f7eSStefano Zampini .    -pc_bddc_use_deluxe_scaling <false> - use deluxe scaling
25620f202f7eSStefano Zampini .    -pc_bddc_schur_layers <-1> - select the economic version of deluxe scaling by specifying the number of layers (-1 corresponds to the original deluxe scaling)
2563bd2a564bSStefano Zampini .    -pc_bddc_adaptive_threshold <0.0> - when a value different than zero is specified, adaptive selection of constraints is performed on edges and faces (requires deluxe scaling and MUMPS or MKL_PARDISO installed)
256428509bceSStefano Zampini -    -pc_bddc_check_level <0> - set verbosity level of debugging output
256528509bceSStefano Zampini 
256628509bceSStefano Zampini    Options for Dirichlet, Neumann or coarse solver can be set with
256728509bceSStefano Zampini .vb
256828509bceSStefano Zampini       -pc_bddc_dirichlet_
256928509bceSStefano Zampini       -pc_bddc_neumann_
257028509bceSStefano Zampini       -pc_bddc_coarse_
257128509bceSStefano Zampini .ve
25720f202f7eSStefano Zampini    e.g -pc_bddc_dirichlet_ksp_type richardson -pc_bddc_dirichlet_pc_type gamg. PCBDDC uses by default KPSPREONLY and PCLU.
257328509bceSStefano Zampini 
25740f202f7eSStefano Zampini    When using a multilevel approach, solvers' options at the N-th level (N > 1) can be specified as
257528509bceSStefano Zampini .vb
2576312be037SStefano Zampini       -pc_bddc_dirichlet_lN_
2577312be037SStefano Zampini       -pc_bddc_neumann_lN_
2578312be037SStefano Zampini       -pc_bddc_coarse_lN_
257928509bceSStefano Zampini .ve
25800f202f7eSStefano Zampini    Note that level number ranges from the finest (0) to the coarsest (N).
25810f202f7eSStefano Zampini    In order to specify options for the BDDC operators at the coarser levels (and not for the solvers), prepend -pc_bddc_coarse_ or -pc_bddc_coarse_l to the option, e.g.
25820f202f7eSStefano Zampini .vb
25830f202f7eSStefano Zampini      -pc_bddc_coarse_pc_bddc_adaptive_threshold 5 -pc_bddc_coarse_l1_pc_bddc_redistribute 3
25840f202f7eSStefano Zampini .ve
25850f202f7eSStefano Zampini    will use a threshold of 5 for constraints' selection at the first coarse level and will redistribute the coarse problem of the first coarse level on 3 processors
2586da1bb401SStefano Zampini 
2587da1bb401SStefano Zampini    Level: intermediate
2588da1bb401SStefano Zampini 
2589b6fdb6dfSStefano Zampini    Developer notes:
2590da1bb401SStefano Zampini 
2591da1bb401SStefano Zampini    Contributed by Stefano Zampini
2592da1bb401SStefano Zampini 
2593da1bb401SStefano Zampini .seealso:  PCCreate(), PCSetType(), PCType (for list of available types), PC,  MATIS
2594da1bb401SStefano Zampini M*/
2595b2573a8aSBarry Smith 
25968cc058d9SJed Brown PETSC_EXTERN PetscErrorCode PCCreate_BDDC(PC pc)
2597da1bb401SStefano Zampini {
2598da1bb401SStefano Zampini   PetscErrorCode      ierr;
2599da1bb401SStefano Zampini   PC_BDDC             *pcbddc;
2600da1bb401SStefano Zampini 
2601da1bb401SStefano Zampini   PetscFunctionBegin;
2602b00a9115SJed Brown   ierr     = PetscNewLog(pc,&pcbddc);CHKERRQ(ierr);
2603da1bb401SStefano Zampini   pc->data = (void*)pcbddc;
2604da1bb401SStefano Zampini 
2605da1bb401SStefano Zampini   /* create PCIS data structure */
2606da1bb401SStefano Zampini   ierr = PCISCreate(pc);CHKERRQ(ierr);
2607da1bb401SStefano Zampini 
26089326c5c6Sstefano_zampini   /* create local graph structure */
26099326c5c6Sstefano_zampini   ierr = PCBDDCGraphCreate(&pcbddc->mat_graph);CHKERRQ(ierr);
26109326c5c6Sstefano_zampini 
26119326c5c6Sstefano_zampini   /* BDDC nonzero defaults */
261208a5cf49SStefano Zampini   pcbddc->use_local_adj             = PETSC_TRUE;
261347d04d0dSStefano Zampini   pcbddc->use_vertices              = PETSC_TRUE;
261447d04d0dSStefano Zampini   pcbddc->use_edges                 = PETSC_TRUE;
26153301b35fSStefano Zampini   pcbddc->symmetric_primal          = PETSC_TRUE;
261614f95afaSStefano Zampini   pcbddc->vertex_size               = 1;
2617c703fcc7SStefano Zampini   pcbddc->recompute_topography      = PETSC_TRUE;
261868457ee5SStefano Zampini   pcbddc->coarse_size               = -1;
261985c4d303SStefano Zampini   pcbddc->use_exact_dirichlet_trick = PETSC_TRUE;
262047d04d0dSStefano Zampini   pcbddc->coarsening_ratio          = 8;
262157de7509SStefano Zampini   pcbddc->coarse_eqs_per_proc       = 1;
262227b6a85dSStefano Zampini   pcbddc->benign_compute_correction = PETSC_TRUE;
26231e0482f5SStefano Zampini   pcbddc->nedfield                  = -1;
26241e0482f5SStefano Zampini   pcbddc->nedglobal                 = PETSC_TRUE;
2625be12c134Sstefano_zampini   pcbddc->graphmaxcount             = PETSC_MAX_INT;
2626b96c3477SStefano Zampini   pcbddc->sub_schurs_layers         = -1;
2627bd2a564bSStefano Zampini   pcbddc->adaptive_threshold[0]     = 0.0;
2628bd2a564bSStefano Zampini   pcbddc->adaptive_threshold[1]     = 0.0;
2629b7eb3628SStefano Zampini 
2630da1bb401SStefano Zampini   /* function pointers */
2631da1bb401SStefano Zampini   pc->ops->apply               = PCApply_BDDC;
263293bd9ae7SStefano Zampini   pc->ops->applytranspose      = PCApplyTranspose_BDDC;
2633da1bb401SStefano Zampini   pc->ops->setup               = PCSetUp_BDDC;
2634da1bb401SStefano Zampini   pc->ops->destroy             = PCDestroy_BDDC;
2635da1bb401SStefano Zampini   pc->ops->setfromoptions      = PCSetFromOptions_BDDC;
26366b78500eSPatrick Sanan   pc->ops->view                = PCView_BDDC;
2637da1bb401SStefano Zampini   pc->ops->applyrichardson     = 0;
2638da1bb401SStefano Zampini   pc->ops->applysymmetricleft  = 0;
2639da1bb401SStefano Zampini   pc->ops->applysymmetricright = 0;
2640534831adSStefano Zampini   pc->ops->presolve            = PCPreSolve_BDDC;
2641534831adSStefano Zampini   pc->ops->postsolve           = PCPostSolve_BDDC;
26429326c5c6Sstefano_zampini   pc->ops->reset               = PCReset_BDDC;
2643da1bb401SStefano Zampini 
2644da1bb401SStefano Zampini   /* composing function */
2645a13144ffSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDiscreteGradient_C",PCBDDCSetDiscreteGradient_BDDC);CHKERRQ(ierr);
2646a198735bSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDivergenceMat_C",PCBDDCSetDivergenceMat_BDDC);CHKERRQ(ierr);
2647906d46d4SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetChangeOfBasisMat_C",PCBDDCSetChangeOfBasisMat_BDDC);CHKERRQ(ierr);
2648674ae819SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetPrimalVerticesLocalIS_C",PCBDDCSetPrimalVerticesLocalIS_BDDC);CHKERRQ(ierr);
264930368db7SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetPrimalVerticesIS_C",PCBDDCSetPrimalVerticesIS_BDDC);CHKERRQ(ierr);
2650bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetCoarseningRatio_C",PCBDDCSetCoarseningRatio_BDDC);CHKERRQ(ierr);
26512b510759SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetLevel_C",PCBDDCSetLevel_BDDC);CHKERRQ(ierr);
2652b8ffe317SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetUseExactDirichlet_C",PCBDDCSetUseExactDirichlet_BDDC);CHKERRQ(ierr);
26532b510759SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetLevels_C",PCBDDCSetLevels_BDDC);CHKERRQ(ierr);
2654bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDirichletBoundaries_C",PCBDDCSetDirichletBoundaries_BDDC);CHKERRQ(ierr);
265582ba6b80SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDirichletBoundariesLocal_C",PCBDDCSetDirichletBoundariesLocal_BDDC);CHKERRQ(ierr);
2656bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetNeumannBoundaries_C",PCBDDCSetNeumannBoundaries_BDDC);CHKERRQ(ierr);
265782ba6b80SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetNeumannBoundariesLocal_C",PCBDDCSetNeumannBoundariesLocal_BDDC);CHKERRQ(ierr);
2658bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetDirichletBoundaries_C",PCBDDCGetDirichletBoundaries_BDDC);CHKERRQ(ierr);
265982ba6b80SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetDirichletBoundariesLocal_C",PCBDDCGetDirichletBoundariesLocal_BDDC);CHKERRQ(ierr);
2660bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetNeumannBoundaries_C",PCBDDCGetNeumannBoundaries_BDDC);CHKERRQ(ierr);
266182ba6b80SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetNeumannBoundariesLocal_C",PCBDDCGetNeumannBoundariesLocal_BDDC);CHKERRQ(ierr);
2662bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDofsSplitting_C",PCBDDCSetDofsSplitting_BDDC);CHKERRQ(ierr);
266363602bcaSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDofsSplittingLocal_C",PCBDDCSetDofsSplittingLocal_BDDC);CHKERRQ(ierr);
2664bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetLocalAdjacencyGraph_C",PCBDDCSetLocalAdjacencyGraph_BDDC);CHKERRQ(ierr);
2665bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCCreateFETIDPOperators_C",PCBDDCCreateFETIDPOperators_BDDC);CHKERRQ(ierr);
2666bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCMatFETIDPGetRHS_C",PCBDDCMatFETIDPGetRHS_BDDC);CHKERRQ(ierr);
2667bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCMatFETIDPGetSolution_C",PCBDDCMatFETIDPGetSolution_BDDC);CHKERRQ(ierr);
2668a06fd7f2SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCPreSolveChangeRHS_C",PCPreSolveChangeRHS_BDDC);CHKERRQ(ierr);
2669ab8c8b98SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCSetCoordinates_C",PCSetCoordinates_BDDC);CHKERRQ(ierr);
2670da1bb401SStefano Zampini   PetscFunctionReturn(0);
2671da1bb401SStefano Zampini }
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