xref: /petsc/src/ksp/pc/impls/bddc/bddc.c (revision 9cc2a9b10ed03bd00862023741ea07ce775730d8)
153cdbc3dSStefano Zampini /* TODOLIST
2eb97c9d2SStefano Zampini 
3eb97c9d2SStefano Zampini    Solvers
4a0d3c3abSStefano Zampini    - Add support for cholesky for coarse solver (similar to local solvers)
5eb97c9d2SStefano Zampini    - Propagate ksp prefixes for solvers to mat objects?
6eb97c9d2SStefano Zampini 
7eb97c9d2SStefano Zampini    User interface
80f202f7eSStefano Zampini    - ** DM attached to pc?
9eb97c9d2SStefano Zampini 
10eb97c9d2SStefano Zampini    Debugging output
11b9b85e73SStefano Zampini    - * Better management of verbosity levels of debugging output
12eb97c9d2SStefano Zampini 
13eb97c9d2SStefano Zampini    Extra
14b9b85e73SStefano Zampini    - *** Is it possible to work with PCBDDCGraph on boundary indices only (less memory consumed)?
15eb97c9d2SStefano Zampini    - BDDC with MG framework?
16eb97c9d2SStefano Zampini 
17eb97c9d2SStefano Zampini    MATIS related operations contained in BDDC code
18eb97c9d2SStefano Zampini    - Provide general case for subassembling
19eb97c9d2SStefano Zampini 
2053cdbc3dSStefano Zampini */
210c7d97c5SJed Brown 
22ab5c6b0cSJed Brown #include <../src/ksp/pc/impls/bddc/bddc.h> /*I "petscpc.h" I*/  /* includes for fortran wrappers */
23ab5c6b0cSJed Brown #include <../src/ksp/pc/impls/bddc/bddcprivate.h>
243b03a366Sstefano_zampini #include <petscblaslapack.h>
25674ae819SStefano Zampini 
260369aaf7SStefano Zampini /* temporarily declare it */
270369aaf7SStefano Zampini PetscErrorCode PCApply_BDDC(PC,Vec,Vec);
280369aaf7SStefano Zampini 
290c7d97c5SJed Brown #undef __FUNCT__
300c7d97c5SJed Brown #define __FUNCT__ "PCSetFromOptions_BDDC"
314416b707SBarry Smith PetscErrorCode PCSetFromOptions_BDDC(PetscOptionItems *PetscOptionsObject,PC pc)
320c7d97c5SJed Brown {
330c7d97c5SJed Brown   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
340c7d97c5SJed Brown   PetscErrorCode ierr;
350c7d97c5SJed Brown 
360c7d97c5SJed Brown   PetscFunctionBegin;
37e55864a3SBarry Smith   ierr = PetscOptionsHead(PetscOptionsObject,"BDDC options");CHKERRQ(ierr);
388eeda7d8SStefano Zampini   /* Verbose debugging */
39a13144ffSStefano Zampini   ierr = PetscOptionsInt("-pc_bddc_check_level","Verbose output for PCBDDC (intended for debug)","none",pcbddc->dbg_flag,&pcbddc->dbg_flag,NULL);CHKERRQ(ierr);
40a13144ffSStefano Zampini   /* Approximate solvers */
41c7017625SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_dirichlet_approximate","Inform PCBDDC that we are using approximate Dirichlet solvers","none",pcbddc->NullSpace_corr[0],&pcbddc->NullSpace_corr[0],NULL);CHKERRQ(ierr);
42c7017625SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_dirichlet_approximate_scale","Inform PCBDDC that we need to scale the Dirichlet solve","none",pcbddc->NullSpace_corr[1],&pcbddc->NullSpace_corr[1],NULL);CHKERRQ(ierr);
43c7017625SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_neumann_approximate","Inform PCBDDC that we are using approximate Neumann solvers","none",pcbddc->NullSpace_corr[2],&pcbddc->NullSpace_corr[2],NULL);CHKERRQ(ierr);
44c7017625SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_neumann_approximate_scale","Inform PCBDDC that we need to scale the Neumann solve","none",pcbddc->NullSpace_corr[3],&pcbddc->NullSpace_corr[3],NULL);CHKERRQ(ierr);
456b78500eSPatrick Sanan   /* Primal space customization */
4608a5cf49SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_use_local_mat_graph","Use or not adjacency graph of local mat for interface analysis","none",pcbddc->use_local_adj,&pcbddc->use_local_adj,NULL);CHKERRQ(ierr);
47be12c134Sstefano_zampini   ierr = PetscOptionsInt("-pc_bddc_graph_maxcount","Maximum number of shared subdomains for a connected component","none",pcbddc->graphmaxcount,&pcbddc->graphmaxcount,NULL);CHKERRQ(ierr);
488eeda7d8SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_use_vertices","Use or not corner dofs in coarse space","none",pcbddc->use_vertices,&pcbddc->use_vertices,NULL);CHKERRQ(ierr);
498eeda7d8SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_use_edges","Use or not edge constraints in coarse space","none",pcbddc->use_edges,&pcbddc->use_edges,NULL);CHKERRQ(ierr);
508eeda7d8SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_use_faces","Use or not face constraints in coarse space","none",pcbddc->use_faces,&pcbddc->use_faces,NULL);CHKERRQ(ierr);
5114f95afaSStefano Zampini   ierr = PetscOptionsInt("-pc_bddc_vertex_size","Connected components smaller or equal to vertex size will be considered as primal vertices","none",pcbddc->vertex_size,&pcbddc->vertex_size,NULL);CHKERRQ(ierr);
526661aa1dSStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_use_true_nnsp","Use near null space attached to the matrix without modifications","none",pcbddc->use_nnsp_true,&pcbddc->use_nnsp_true,NULL);CHKERRQ(ierr);
5314f95afaSStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_use_qr_single","Use QR factorization for single constraints on cc (QR is always used when multiple constraints are present)","none",pcbddc->use_qr_single,&pcbddc->use_qr_single,NULL);CHKERRQ(ierr);
548eeda7d8SStefano Zampini   /* Change of basis */
55b9b85e73SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_use_change_of_basis","Use or not internal change of basis on local edge nodes","none",pcbddc->use_change_of_basis,&pcbddc->use_change_of_basis,NULL);CHKERRQ(ierr);
56b9b85e73SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_use_change_on_faces","Use or not internal change of basis on local face nodes","none",pcbddc->use_change_on_faces,&pcbddc->use_change_on_faces,NULL);CHKERRQ(ierr);
57674ae819SStefano Zampini   if (!pcbddc->use_change_of_basis) {
58674ae819SStefano Zampini     pcbddc->use_change_on_faces = PETSC_FALSE;
59674ae819SStefano Zampini   }
608eeda7d8SStefano Zampini   /* Switch between M_2 (default) and M_3 preconditioners (as defined by C. Dohrmann in the ref. article) */
618eeda7d8SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_switch_static","Switch on static condensation ops around the interface preconditioner","none",pcbddc->switch_static,&pcbddc->switch_static,NULL);CHKERRQ(ierr);
6257de7509SStefano Zampini   ierr = PetscOptionsInt("-pc_bddc_coarse_eqs_per_proc","Number of equations per process for coarse problem redistribution (significant only at the coarsest level)","none",pcbddc->coarse_eqs_per_proc,&pcbddc->coarse_eqs_per_proc,NULL);CHKERRQ(ierr);
630298fd71SBarry Smith   ierr = PetscOptionsInt("-pc_bddc_coarsening_ratio","Set coarsening ratio used in multilevel coarsening","none",pcbddc->coarsening_ratio,&pcbddc->coarsening_ratio,NULL);CHKERRQ(ierr);
642b510759SStefano Zampini   ierr = PetscOptionsInt("-pc_bddc_levels","Set maximum number of levels for multilevel","none",pcbddc->max_levels,&pcbddc->max_levels,NULL);CHKERRQ(ierr);
65323d395dSStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_use_coarse_estimates","Use estimated eigenvalues for coarse problem","none",pcbddc->use_coarse_estimates,&pcbddc->use_coarse_estimates,NULL);CHKERRQ(ierr);
66674ae819SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_use_deluxe_scaling","Use deluxe scaling for BDDC","none",pcbddc->use_deluxe_scaling,&pcbddc->use_deluxe_scaling,NULL);CHKERRQ(ierr);
67b96c3477SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_schur_rebuild","Whether or not the interface graph for Schur principal minors has to be rebuilt (i.e. define the interface without any adjacency)","none",pcbddc->sub_schurs_rebuild,&pcbddc->sub_schurs_rebuild,NULL);CHKERRQ(ierr);
68b96c3477SStefano Zampini   ierr = PetscOptionsInt("-pc_bddc_schur_layers","Number of dofs' layers for the computation of principal minors (i.e. -1 uses all dofs)","none",pcbddc->sub_schurs_layers,&pcbddc->sub_schurs_layers,NULL);CHKERRQ(ierr);
69b96c3477SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_schur_use_useradj","Whether or not the CSR graph specified by the user should be used for computing successive layers (default is to use adj of local mat)","none",pcbddc->sub_schurs_use_useradj,&pcbddc->sub_schurs_use_useradj,NULL);CHKERRQ(ierr);
70683d3df6SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_schur_exact","Whether or not to use the exact Schur complement instead of the reduced one (which excludes size 1 cc)","none",pcbddc->sub_schurs_exact_schur,&pcbddc->sub_schurs_exact_schur,NULL);CHKERRQ(ierr);
71bf3a8328SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_deluxe_zerorows","Zero rows and columns of deluxe operators associated with primal dofs","none",pcbddc->deluxe_zerorows,&pcbddc->deluxe_zerorows,NULL);CHKERRQ(ierr);
72bf3a8328SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_adaptive_userdefined","Use user-defined constraints (should be attached via MatSetNearNullSpace to pmat) in addition to those adaptively generated","none",pcbddc->adaptive_userdefined,&pcbddc->adaptive_userdefined,NULL);CHKERRQ(ierr);
734c6709b3SStefano Zampini   ierr = PetscOptionsReal("-pc_bddc_adaptive_threshold","Threshold to be used for adaptive selection of constraints","none",pcbddc->adaptive_threshold,&pcbddc->adaptive_threshold,NULL);CHKERRQ(ierr);
7408122e43SStefano Zampini   ierr = PetscOptionsInt("-pc_bddc_adaptive_nmin","Minimum number of constraints per connected components","none",pcbddc->adaptive_nmin,&pcbddc->adaptive_nmin,NULL);CHKERRQ(ierr);
7508122e43SStefano Zampini   ierr = PetscOptionsInt("-pc_bddc_adaptive_nmax","Maximum number of constraints per connected components","none",pcbddc->adaptive_nmax,&pcbddc->adaptive_nmax,NULL);CHKERRQ(ierr);
763301b35fSStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_symmetric","Symmetric computation of primal basis functions","none",pcbddc->symmetric_primal,&pcbddc->symmetric_primal,NULL);CHKERRQ(ierr);
77b0c7d250SStefano Zampini   ierr = PetscOptionsInt("-pc_bddc_coarse_adj","Number of processors where to map the coarse adjacency list","none",pcbddc->coarse_adj_red,&pcbddc->coarse_adj_red,NULL);CHKERRQ(ierr);
78b3afcdbeSStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_benign_trick","Apply the benign subspace trick to saddle point problems with discontinuous pressures","none",pcbddc->benign_saddle_point,&pcbddc->benign_saddle_point,NULL);CHKERRQ(ierr);
79e9627c49SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_benign_change","Compute the pressure change of basis explicitly","none",pcbddc->benign_change_explicit,&pcbddc->benign_change_explicit,NULL);CHKERRQ(ierr);
8027b6a85dSStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_benign_compute_correction","Compute the benign correction during PreSolve","none",pcbddc->benign_compute_correction,&pcbddc->benign_compute_correction,NULL);CHKERRQ(ierr);
81a198735bSStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_nonetflux","Automatic computation of no-net-flux quadrature weights","none",pcbddc->compute_nonetflux,&pcbddc->compute_nonetflux,NULL);CHKERRQ(ierr);
824f1b2e48SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_detect_disconnected","Detects disconnected subdomains","none",pcbddc->detect_disconnected,&pcbddc->detect_disconnected,NULL);CHKERRQ(ierr);
8370c64980SStefano Zampini   ierr = PetscOptionsBool("-pc_bddc_eliminate_dirichlet","Whether or not we want to eliminate dirichlet dofs during presolve","none",pcbddc->eliminate_dirdofs,&pcbddc->eliminate_dirdofs,NULL);CHKERRQ(ierr);
840c7d97c5SJed Brown   ierr = PetscOptionsTail();CHKERRQ(ierr);
850c7d97c5SJed Brown   PetscFunctionReturn(0);
860c7d97c5SJed Brown }
876b78500eSPatrick Sanan 
886b78500eSPatrick Sanan #undef __FUNCT__
896b78500eSPatrick Sanan #define __FUNCT__ "PCView_BDDC"
906b78500eSPatrick Sanan static PetscErrorCode PCView_BDDC(PC pc,PetscViewer viewer)
916b78500eSPatrick Sanan {
926b78500eSPatrick Sanan   PC_BDDC              *pcbddc = (PC_BDDC*)pc->data;
93e9627c49SStefano Zampini   PC_IS                *pcis = (PC_IS*)pc->data;
946b78500eSPatrick Sanan   PetscErrorCode       ierr;
956b78500eSPatrick Sanan   PetscBool            isascii,isstring;
96e9627c49SStefano Zampini   PetscSubcomm         subcomm;
97e9627c49SStefano Zampini   PetscViewer          subviewer;
986b78500eSPatrick Sanan 
996b78500eSPatrick Sanan   PetscFunctionBegin;
1006b78500eSPatrick Sanan   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&isascii);CHKERRQ(ierr);
1016b78500eSPatrick Sanan   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSTRING,&isstring);CHKERRQ(ierr);
1026b78500eSPatrick Sanan   /* Nothing printed for the String viewer */
1036b78500eSPatrick Sanan   /* ASCII viewer */
1046b78500eSPatrick Sanan   if (isascii) {
1054b2aedd3SStefano Zampini     PetscMPIInt   color,rank,size;
106fbad9177SStefano Zampini     PetscInt64    loc[7],gsum[6],gmax[6],gmin[6],totbenign;
107e9627c49SStefano Zampini     PetscScalar   interface_size;
108e9627c49SStefano Zampini     PetscReal     ratio1=0.,ratio2=0.;
109e9627c49SStefano Zampini     Vec           counter;
1106b78500eSPatrick Sanan 
111b74ba07aSstefano_zampini     if (!pc->setupcalled) {
112b74ba07aSstefano_zampini       ierr = PetscViewerASCIIPrintf(viewer,"  Partial information available: preconditioner has not been setup yet\n");CHKERRQ(ierr);
113b74ba07aSstefano_zampini     }
114e9627c49SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use verbose output: %d\n",pcbddc->dbg_flag);CHKERRQ(ierr);
115e9627c49SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use user-defined CSR: %d\n",!!pcbddc->mat_graph->nvtxs_csr);CHKERRQ(ierr);
11666da6bd7Sstefano_zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use local mat graph: %d\n",pcbddc->use_local_adj && !pcbddc->mat_graph->nvtxs_csr);CHKERRQ(ierr);
117e9627c49SStefano Zampini     if (pcbddc->mat_graph->twodim) {
118e9627c49SStefano Zampini       ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Connectivity graph topological dimension: 2\n");CHKERRQ(ierr);
119e9627c49SStefano Zampini     } else {
120e9627c49SStefano Zampini       ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Connectivity graph topological dimension: 3\n");CHKERRQ(ierr);
121e9627c49SStefano Zampini     }
122a70d66d9SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Graph max count: %d\n",pcbddc->graphmaxcount);CHKERRQ(ierr);
123a198735bSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use vertices: %d (vertex size %d)\n",pcbddc->use_vertices,pcbddc->vertex_size);CHKERRQ(ierr);
1246b78500eSPatrick Sanan     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use edges: %d\n",pcbddc->use_edges);CHKERRQ(ierr);
1256b78500eSPatrick Sanan     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use faces: %d\n",pcbddc->use_faces);CHKERRQ(ierr);
1266b78500eSPatrick Sanan     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use true near null space: %d\n",pcbddc->use_nnsp_true);CHKERRQ(ierr);
1276b78500eSPatrick Sanan     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use QR for single constraints on cc: %d\n",pcbddc->use_qr_single);CHKERRQ(ierr);
1286b78500eSPatrick Sanan     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use change of basis on local edge nodes: %d\n",pcbddc->use_change_of_basis);CHKERRQ(ierr);
1296b78500eSPatrick Sanan     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use change of basis on local face nodes: %d\n",pcbddc->use_change_on_faces);CHKERRQ(ierr);
13027b6a85dSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: User defined change of basis matrix: %d\n",!!pcbddc->user_ChangeOfBasisMatrix);CHKERRQ(ierr);
13127b6a85dSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Has change of basis matrix: %d\n",!!pcbddc->ChangeOfBasisMatrix);CHKERRQ(ierr);
13227b6a85dSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Eliminate dirichlet boundary dofs: %d\n",pcbddc->eliminate_dirdofs);CHKERRQ(ierr);
1336b78500eSPatrick Sanan     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Switch on static condensation ops around the interface preconditioner: %d\n",pcbddc->switch_static);CHKERRQ(ierr);
13427b6a85dSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use exact dirichlet trick: %d\n",pcbddc->use_exact_dirichlet_trick);CHKERRQ(ierr);
1356b78500eSPatrick Sanan     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Multilevel max levels: %d\n",pcbddc->max_levels);CHKERRQ(ierr);
136e9627c49SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Multilevel coarsening ratio: %d\n",pcbddc->coarsening_ratio);CHKERRQ(ierr);
1376b78500eSPatrick Sanan     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use estimated eigs for coarse problem: %d\n",pcbddc->use_coarse_estimates);CHKERRQ(ierr);
1386b78500eSPatrick Sanan     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use deluxe scaling: %d\n",pcbddc->use_deluxe_scaling);CHKERRQ(ierr);
139e9627c49SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use deluxe zerorows: %d\n",pcbddc->deluxe_zerorows);CHKERRQ(ierr);
1406b78500eSPatrick Sanan     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Rebuild interface graph for Schur principal minors: %d\n",pcbddc->sub_schurs_rebuild);CHKERRQ(ierr);
1416b78500eSPatrick Sanan     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Number of dofs' layers for the computation of principal minors: %d\n",pcbddc->sub_schurs_layers);CHKERRQ(ierr);
1426b78500eSPatrick Sanan     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use user CSR graph to compute successive layers: %d\n",pcbddc->sub_schurs_use_useradj);CHKERRQ(ierr);
143e9627c49SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Adaptive constraint selection threshold (active %d, userdefined %d): %g\n",pcbddc->adaptive_threshold,pcbddc->adaptive_selection,pcbddc->adaptive_userdefined);CHKERRQ(ierr);
1446b78500eSPatrick Sanan     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Min constraints / connected component: %d\n",pcbddc->adaptive_nmin);CHKERRQ(ierr);
1456b78500eSPatrick Sanan     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Max constraints / connected component: %d\n",pcbddc->adaptive_nmax);CHKERRQ(ierr);
146e9627c49SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Invert exact Schur complement for adaptive selection: %d\n",pcbddc->sub_schurs_exact_schur);CHKERRQ(ierr);
1476b78500eSPatrick Sanan     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Symmetric computation of primal basis functions: %d\n",pcbddc->symmetric_primal);CHKERRQ(ierr);
1486b78500eSPatrick Sanan     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Num. Procs. to map coarse adjacency list: %d\n",pcbddc->coarse_adj_red);CHKERRQ(ierr);
149e9627c49SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Coarse eqs per proc (significant at the coarsest level): %d\n",pcbddc->coarse_eqs_per_proc);CHKERRQ(ierr);
150e9627c49SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Detect disconnected: %d\n",pcbddc->detect_disconnected);CHKERRQ(ierr);
151fc17d649SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Benign subspace trick: %d (change explicit %d)\n",pcbddc->benign_saddle_point,pcbddc->benign_change_explicit);CHKERRQ(ierr);
152a198735bSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Benign subspace trick is active: %d\n",pcbddc->benign_have_null);CHKERRQ(ierr);
153a198735bSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Algebraic computation of no-net-flux %d\n",pcbddc->compute_nonetflux);CHKERRQ(ierr);
154b74ba07aSstefano_zampini     if (!pc->setupcalled) PetscFunctionReturn(0);
1556b78500eSPatrick Sanan 
156fbad9177SStefano Zampini     /* compute interface size */
157e9627c49SStefano Zampini     ierr = VecSet(pcis->vec1_B,1.0);CHKERRQ(ierr);
158e9627c49SStefano Zampini     ierr = MatCreateVecs(pc->pmat,&counter,0);CHKERRQ(ierr);
159e9627c49SStefano Zampini     ierr = VecSet(counter,0.0);CHKERRQ(ierr);
160e9627c49SStefano Zampini     ierr = VecScatterBegin(pcis->global_to_B,pcis->vec1_B,counter,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
161e9627c49SStefano Zampini     ierr = VecScatterEnd(pcis->global_to_B,pcis->vec1_B,counter,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
162e9627c49SStefano Zampini     ierr = VecSum(counter,&interface_size);CHKERRQ(ierr);
163e9627c49SStefano Zampini     ierr = VecDestroy(&counter);CHKERRQ(ierr);
164fbad9177SStefano Zampini 
165fbad9177SStefano Zampini     /* compute some statistics on the domain decomposition */
166e9627c49SStefano Zampini     gsum[0] = 1;
167fbad9177SStefano Zampini     gsum[1] = gsum[2] = gsum[3] = gsum[4] = gsum[5] = 0;
168e9627c49SStefano Zampini     loc[0]  = !!pcis->n;
169e9627c49SStefano Zampini     loc[1]  = pcis->n - pcis->n_B;
170e9627c49SStefano Zampini     loc[2]  = pcis->n_B;
171e9627c49SStefano Zampini     loc[3]  = pcbddc->local_primal_size;
172345ecf6cSStefano Zampini     loc[4]  = pcis->n;
173fbad9177SStefano Zampini     loc[5]  = pcbddc->n_local_subs > 0 ? pcbddc->n_local_subs : (pcis->n ? 1 : 0);
174fbad9177SStefano Zampini     loc[6]  = pcbddc->benign_n;
175fbad9177SStefano Zampini     ierr = MPI_Reduce(loc,gsum,6,MPIU_INT64,MPI_SUM,0,PetscObjectComm((PetscObject)pc));CHKERRQ(ierr);
176fbad9177SStefano Zampini     if (!loc[0]) loc[1] = loc[2] = loc[3] = loc[4] = loc[5] = -1;
177fbad9177SStefano Zampini     ierr = MPI_Reduce(loc,gmax,6,MPIU_INT64,MPI_MAX,0,PetscObjectComm((PetscObject)pc));CHKERRQ(ierr);
178fbad9177SStefano Zampini     if (!loc[0]) loc[1] = loc[2] = loc[3] = loc[4] = loc[5] = PETSC_MAX_INT;
179fbad9177SStefano Zampini     ierr = MPI_Reduce(loc,gmin,6,MPIU_INT64,MPI_MIN,0,PetscObjectComm((PetscObject)pc));CHKERRQ(ierr);
180fbad9177SStefano Zampini     ierr = MPI_Reduce(&loc[6],&totbenign,1,MPIU_INT64,MPI_SUM,0,PetscObjectComm((PetscObject)pc));CHKERRQ(ierr);
181e9627c49SStefano Zampini     if (pcbddc->coarse_size) {
182e9627c49SStefano Zampini       ratio1 = pc->pmat->rmap->N/(1.*pcbddc->coarse_size);
183e9627c49SStefano Zampini       ratio2 = PetscRealPart(interface_size)/pcbddc->coarse_size;
184e9627c49SStefano Zampini     }
185e9627c49SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: ********************************** STATISTICS AT LEVEL %d **********************************\n",pcbddc->current_level);CHKERRQ(ierr);
186e9627c49SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Global dofs sizes: all %d interface %d coarse %d\n",pc->pmat->rmap->N,(PetscInt)PetscRealPart(interface_size),pcbddc->coarse_size);CHKERRQ(ierr);
187e9627c49SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Coarsening ratios: all/coarse %d interface/coarse %d\n",(PetscInt)ratio1,(PetscInt)ratio2);CHKERRQ(ierr);
188e9627c49SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Active processes : %d\n",(PetscInt)gsum[0]);CHKERRQ(ierr);
189fbad9177SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Total subdomains : %d\n",(PetscInt)gsum[5]);CHKERRQ(ierr);
190345ecf6cSStefano Zampini     if (pcbddc->benign_have_null) {
191345ecf6cSStefano Zampini       ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Benign subs      : %d\n",(PetscInt)totbenign);CHKERRQ(ierr);
192345ecf6cSStefano Zampini     }
193e9627c49SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Dofs type        :\tMIN\tMAX\tMEAN\n",(PetscInt)gmin[1],(PetscInt)gmax[1],(PetscInt)(gsum[1]/gsum[0]));CHKERRQ(ierr);
194e9627c49SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Interior  dofs   :\t%d\t%d\t%d\n",(PetscInt)gmin[1],(PetscInt)gmax[1],(PetscInt)(gsum[1]/gsum[0]));CHKERRQ(ierr);
195e9627c49SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Interface dofs   :\t%d\t%d\t%d\n",(PetscInt)gmin[2],(PetscInt)gmax[2],(PetscInt)(gsum[2]/gsum[0]));CHKERRQ(ierr);
196e9627c49SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Primal    dofs   :\t%d\t%d\t%d\n",(PetscInt)gmin[3],(PetscInt)gmax[3],(PetscInt)(gsum[3]/gsum[0]));CHKERRQ(ierr);
197345ecf6cSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Local     dofs   :\t%d\t%d\t%d\n",(PetscInt)gmin[4],(PetscInt)gmax[4],(PetscInt)(gsum[4]/gsum[0]));CHKERRQ(ierr);
198fbad9177SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Local     subs   :\t%d\t%d\n",(PetscInt)gmin[5],(PetscInt)gmax[5]);CHKERRQ(ierr);
19927b6a85dSStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: ********************************** COARSE PROBLEM DETAILS *********************************\n",pcbddc->current_level);CHKERRQ(ierr);
20027b6a85dSStefano Zampini     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
201e9627c49SStefano Zampini 
202fbad9177SStefano Zampini     /* the coarse problem can be handled by a different communicator */
203e9627c49SStefano Zampini     if (pcbddc->coarse_ksp) color = 1;
204e9627c49SStefano Zampini     else color = 0;
205e9627c49SStefano Zampini     ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)pc),&rank);CHKERRQ(ierr);
2064b2aedd3SStefano Zampini     ierr = MPI_Comm_size(PetscObjectComm((PetscObject)pc),&size);CHKERRQ(ierr);
207e9627c49SStefano Zampini     ierr = PetscSubcommCreate(PetscObjectComm((PetscObject)pc),&subcomm);CHKERRQ(ierr);
2084b2aedd3SStefano Zampini     ierr = PetscSubcommSetNumber(subcomm,PetscMin(size,2));CHKERRQ(ierr);
209e9627c49SStefano Zampini     ierr = PetscSubcommSetTypeGeneral(subcomm,color,rank);CHKERRQ(ierr);
210e9627c49SStefano Zampini     ierr = PetscViewerGetSubViewer(viewer,PetscSubcommChild(subcomm),&subviewer);CHKERRQ(ierr);
211e9627c49SStefano Zampini     if (color == 1) {
212e9627c49SStefano Zampini       ierr = KSPView(pcbddc->coarse_ksp,subviewer);CHKERRQ(ierr);
213e9627c49SStefano Zampini       ierr = PetscViewerFlush(subviewer);CHKERRQ(ierr);
214e9627c49SStefano Zampini     }
215e9627c49SStefano Zampini     ierr = PetscViewerRestoreSubViewer(viewer,PetscSubcommChild(subcomm),&subviewer);CHKERRQ(ierr);
216e9627c49SStefano Zampini     ierr = PetscSubcommDestroy(&subcomm);CHKERRQ(ierr);
217e9627c49SStefano Zampini     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
218e9627c49SStefano Zampini   }
2196b78500eSPatrick Sanan   PetscFunctionReturn(0);
2206b78500eSPatrick Sanan }
221a13144ffSStefano Zampini 
222a13144ffSStefano Zampini #undef __FUNCT__
223a13144ffSStefano Zampini #define __FUNCT__ "PCBDDCSetDiscreteGradient_BDDC"
2241e0482f5SStefano Zampini static PetscErrorCode PCBDDCSetDiscreteGradient_BDDC(PC pc, Mat G, PetscInt order, PetscInt field, PetscBool global, PetscBool conforming)
225a13144ffSStefano Zampini {
226a13144ffSStefano Zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
227a13144ffSStefano Zampini   PetscErrorCode ierr;
228a13144ffSStefano Zampini 
229a13144ffSStefano Zampini   PetscFunctionBegin;
230a13144ffSStefano Zampini   ierr = PetscObjectReference((PetscObject)G);CHKERRQ(ierr);
231a13144ffSStefano Zampini   ierr = MatDestroy(&pcbddc->discretegradient);CHKERRQ(ierr);
232a13144ffSStefano Zampini   pcbddc->discretegradient = G;
233a13144ffSStefano Zampini   pcbddc->nedorder         = order > 0 ? order : -order;
234495a2a07SStefano Zampini   pcbddc->nedfield         = field;
2351e0482f5SStefano Zampini   pcbddc->nedglobal        = global;
2361e0482f5SStefano Zampini   pcbddc->conforming       = conforming;
237a13144ffSStefano Zampini   PetscFunctionReturn(0);
238a13144ffSStefano Zampini }
239a13144ffSStefano Zampini 
240a13144ffSStefano Zampini #undef __FUNCT__
241a13144ffSStefano Zampini #define __FUNCT__ "PCBDDCSetDiscreteGradient"
242a13144ffSStefano Zampini /*@
243a13144ffSStefano Zampini  PCBDDCSetDiscreteGradient - Sets the discrete gradient
244a13144ffSStefano Zampini 
245a13144ffSStefano Zampini    Collective on PC
246a13144ffSStefano Zampini 
247a13144ffSStefano Zampini    Input Parameters:
248a13144ffSStefano Zampini +  pc         - the preconditioning context
249a13144ffSStefano Zampini .  G          - the discrete gradient matrix (should be in AIJ format)
250a13144ffSStefano Zampini .  order      - the order of the Nedelec space (1 for the lowest order)
251495a2a07SStefano Zampini .  field      - the field id of the Nedelec dofs (not used if the fields have not been specified)
2521e0482f5SStefano Zampini .  global     - the type of global ordering for the rows of G
253a13144ffSStefano Zampini -  conforming - whether the mesh is conforming or not
254a13144ffSStefano Zampini 
255a13144ffSStefano Zampini    Level: advanced
256a13144ffSStefano Zampini 
257a13144ffSStefano Zampini    Notes: The discrete gradient matrix G is used to analyze the subdomain edges, and it should not contain any zero entry.
258495a2a07SStefano Zampini           For variable order spaces, the order should be set to zero.
2591e0482f5SStefano Zampini           If global is true, the rows of G should be given in global ordering for the whole dofs;
2601e0482f5SStefano Zampini           if false, the ordering should be global for the Nedelec field.
2611e0482f5SStefano Zampini           In the latter case, it should hold gid[i] < gid[j] iff geid[i] < geid[j], with gid the global orderding for all the dofs
2621e0482f5SStefano Zampini           and geid the one for the Nedelec field.
263a13144ffSStefano Zampini 
264495a2a07SStefano Zampini .seealso: PCBDDC,PCBDDCSetDofsSplitting(),PCBDDCSetDofsSplittingLocal()
265a13144ffSStefano Zampini @*/
2661e0482f5SStefano Zampini PetscErrorCode PCBDDCSetDiscreteGradient(PC pc, Mat G, PetscInt order, PetscInt field, PetscBool global, PetscBool conforming)
267a13144ffSStefano Zampini {
268a13144ffSStefano Zampini   PetscErrorCode ierr;
269a13144ffSStefano Zampini 
270a13144ffSStefano Zampini   PetscFunctionBegin;
271a13144ffSStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
272a13144ffSStefano Zampini   PetscValidHeaderSpecific(G,MAT_CLASSID,2);
273a13144ffSStefano Zampini   PetscValidLogicalCollectiveInt(pc,order,3);
2741e0482f5SStefano Zampini   PetscValidLogicalCollectiveInt(pc,field,4);
2751e0482f5SStefano Zampini   PetscValidLogicalCollectiveBool(pc,global,5);
2761e0482f5SStefano Zampini   PetscValidLogicalCollectiveBool(pc,conforming,6);
2771e0482f5SStefano Zampini   PetscCheckSameComm(pc,1,G,2);
2781e0482f5SStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetDiscreteGradient_C",(PC,Mat,PetscInt,PetscInt,PetscBool,PetscBool),(pc,G,order,field,global,conforming));CHKERRQ(ierr);
279a13144ffSStefano Zampini   PetscFunctionReturn(0);
280a13144ffSStefano Zampini }
281a13144ffSStefano Zampini 
282a198735bSStefano Zampini #undef __FUNCT__
283a198735bSStefano Zampini #define __FUNCT__ "PCBDDCSetDivergenceMat_BDDC"
2848ae0ca82SStefano Zampini static PetscErrorCode PCBDDCSetDivergenceMat_BDDC(PC pc, Mat divudotp, PetscBool trans, IS vl2l)
285a198735bSStefano Zampini {
286a198735bSStefano Zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
287a198735bSStefano Zampini   PetscErrorCode ierr;
2886b78500eSPatrick Sanan 
289a198735bSStefano Zampini   PetscFunctionBegin;
290a198735bSStefano Zampini   ierr = PetscObjectReference((PetscObject)divudotp);CHKERRQ(ierr);
291a198735bSStefano Zampini   ierr = MatDestroy(&pcbddc->divudotp);CHKERRQ(ierr);
292a198735bSStefano Zampini   pcbddc->divudotp = divudotp;
2938ae0ca82SStefano Zampini   pcbddc->divudotp_trans = trans;
294a198735bSStefano Zampini   pcbddc->compute_nonetflux = PETSC_TRUE;
295a198735bSStefano Zampini   if (vl2l) {
296a198735bSStefano Zampini     ierr = PetscObjectReference((PetscObject)vl2l);CHKERRQ(ierr);
297fa23a32eSStefano Zampini     ierr = ISDestroy(&pcbddc->divudotp_vl2l);CHKERRQ(ierr);
298a198735bSStefano Zampini     pcbddc->divudotp_vl2l = vl2l;
299a198735bSStefano Zampini   }
300a198735bSStefano Zampini   PetscFunctionReturn(0);
301a198735bSStefano Zampini }
3023d996552SStefano Zampini 
303a198735bSStefano Zampini #undef __FUNCT__
304a198735bSStefano Zampini #define __FUNCT__ "PCBDDCSetDivergenceMat"
305a198735bSStefano Zampini /*@
306a198735bSStefano Zampini  PCBDDCSetDivergenceMat - Sets the linear operator representing \int_\Omega \div {\bf u} \cdot p dx
307a198735bSStefano Zampini 
308a198735bSStefano Zampini    Collective on PC
309a198735bSStefano Zampini 
310a198735bSStefano Zampini    Input Parameters:
311a198735bSStefano Zampini +  pc - the preconditioning context
312a198735bSStefano Zampini .  divudotp - the matrix (must be of type MATIS)
3138ae0ca82SStefano Zampini .  trans - if trans if false (resp. true), then pressures are in the test (trial) space and velocities are in the trial (test) space.
314bb05f991SStefano Zampini -  vl2l - optional IS describing the local (wrt the local mat in divudotp) to local (wrt the local mat in pc->pmat) map for the velocities
315a198735bSStefano Zampini 
316a198735bSStefano Zampini    Level: advanced
317a198735bSStefano Zampini 
3188ae0ca82SStefano Zampini    Notes: This auxiliary matrix is used to compute quadrature weights representing the net-flux across subdomain boundaries
319a198735bSStefano Zampini 
320a198735bSStefano Zampini .seealso: PCBDDC
321a198735bSStefano Zampini @*/
3228ae0ca82SStefano Zampini PetscErrorCode PCBDDCSetDivergenceMat(PC pc, Mat divudotp, PetscBool trans, IS vl2l)
323a198735bSStefano Zampini {
324a198735bSStefano Zampini   PetscBool      ismatis;
325a198735bSStefano Zampini   PetscErrorCode ierr;
326a198735bSStefano Zampini 
327a198735bSStefano Zampini   PetscFunctionBegin;
328a198735bSStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
329a198735bSStefano Zampini   PetscValidHeaderSpecific(divudotp,MAT_CLASSID,2);
330a198735bSStefano Zampini   PetscCheckSameComm(pc,1,divudotp,2);
3318ae0ca82SStefano Zampini   PetscValidLogicalCollectiveBool(pc,trans,3);
3328ae0ca82SStefano Zampini   if (vl2l) PetscValidHeaderSpecific(divudotp,IS_CLASSID,4);
333a198735bSStefano Zampini   ierr = PetscObjectTypeCompare((PetscObject)divudotp,MATIS,&ismatis);CHKERRQ(ierr);
334a198735bSStefano Zampini   if (!ismatis) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_ARG_WRONG,"Divergence matrix needs to be of type MATIS");
3358ae0ca82SStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetDivergenceMat_C",(PC,Mat,PetscBool,IS),(pc,divudotp,trans,vl2l));CHKERRQ(ierr);
336a198735bSStefano Zampini   PetscFunctionReturn(0);
337a198735bSStefano Zampini }
3382d505d7fSStefano Zampini 
339674ae819SStefano Zampini #undef __FUNCT__
340906d46d4SStefano Zampini #define __FUNCT__ "PCBDDCSetChangeOfBasisMat_BDDC"
3411dd7afcfSStefano Zampini static PetscErrorCode PCBDDCSetChangeOfBasisMat_BDDC(PC pc, Mat change, PetscBool interior)
342b9b85e73SStefano Zampini {
343b9b85e73SStefano Zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
344b9b85e73SStefano Zampini   PetscErrorCode ierr;
345b9b85e73SStefano Zampini 
346b9b85e73SStefano Zampini   PetscFunctionBegin;
347b9b85e73SStefano Zampini   ierr = PetscObjectReference((PetscObject)change);CHKERRQ(ierr);
34856282151SStefano Zampini   ierr = MatDestroy(&pcbddc->user_ChangeOfBasisMatrix);CHKERRQ(ierr);
349b9b85e73SStefano Zampini   pcbddc->user_ChangeOfBasisMatrix = change;
3501dd7afcfSStefano Zampini   pcbddc->change_interior = interior;
351b9b85e73SStefano Zampini   PetscFunctionReturn(0);
352b9b85e73SStefano Zampini }
353b9b85e73SStefano Zampini #undef __FUNCT__
354906d46d4SStefano Zampini #define __FUNCT__ "PCBDDCSetChangeOfBasisMat"
355b9b85e73SStefano Zampini /*@
356906d46d4SStefano Zampini  PCBDDCSetChangeOfBasisMat - Set user defined change of basis for dofs
357b9b85e73SStefano Zampini 
358b9b85e73SStefano Zampini    Collective on PC
359b9b85e73SStefano Zampini 
360b9b85e73SStefano Zampini    Input Parameters:
361b9b85e73SStefano Zampini +  pc - the preconditioning context
3621dd7afcfSStefano Zampini .  change - the change of basis matrix
3631dd7afcfSStefano Zampini -  interior - whether or not the change of basis modifies interior dofs
364b9b85e73SStefano Zampini 
365b9b85e73SStefano Zampini    Level: intermediate
366b9b85e73SStefano Zampini 
367b9b85e73SStefano Zampini    Notes:
368b9b85e73SStefano Zampini 
369b9b85e73SStefano Zampini .seealso: PCBDDC
370b9b85e73SStefano Zampini @*/
3711dd7afcfSStefano Zampini PetscErrorCode PCBDDCSetChangeOfBasisMat(PC pc, Mat change, PetscBool interior)
372b9b85e73SStefano Zampini {
373b9b85e73SStefano Zampini   PetscErrorCode ierr;
374b9b85e73SStefano Zampini 
375b9b85e73SStefano Zampini   PetscFunctionBegin;
376b9b85e73SStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
377b9b85e73SStefano Zampini   PetscValidHeaderSpecific(change,MAT_CLASSID,2);
378906d46d4SStefano Zampini   PetscCheckSameComm(pc,1,change,2);
379906d46d4SStefano Zampini   if (pc->mat) {
380906d46d4SStefano Zampini     PetscInt rows_c,cols_c,rows,cols;
381906d46d4SStefano Zampini     ierr = MatGetSize(pc->mat,&rows,&cols);CHKERRQ(ierr);
382906d46d4SStefano Zampini     ierr = MatGetSize(change,&rows_c,&cols_c);CHKERRQ(ierr);
3836c4ed002SBarry Smith     if (rows_c != rows) SETERRQ2(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Invalid number of rows for change of basis matrix! %d != %d",rows_c,rows);
3846c4ed002SBarry Smith     if (cols_c != cols) SETERRQ2(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Invalid number of columns for change of basis matrix! %d != %d",cols_c,cols);
385906d46d4SStefano Zampini     ierr = MatGetLocalSize(pc->mat,&rows,&cols);CHKERRQ(ierr);
386906d46d4SStefano Zampini     ierr = MatGetLocalSize(change,&rows_c,&cols_c);CHKERRQ(ierr);
3876c4ed002SBarry Smith     if (rows_c != rows) SETERRQ2(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Invalid number of local rows for change of basis matrix! %d != %d",rows_c,rows);
3886c4ed002SBarry Smith     if (cols_c != cols) SETERRQ2(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Invalid number of local columns for change of basis matrix! %d != %d",cols_c,cols);
389906d46d4SStefano Zampini   }
3901dd7afcfSStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetChangeOfBasisMat_C",(PC,Mat,PetscBool),(pc,change,interior));CHKERRQ(ierr);
391b9b85e73SStefano Zampini   PetscFunctionReturn(0);
392b9b85e73SStefano Zampini }
3932d505d7fSStefano Zampini 
394b9b85e73SStefano Zampini #undef __FUNCT__
39530368db7SStefano Zampini #define __FUNCT__ "PCBDDCSetPrimalVerticesIS_BDDC"
39630368db7SStefano Zampini static PetscErrorCode PCBDDCSetPrimalVerticesIS_BDDC(PC pc, IS PrimalVertices)
39730368db7SStefano Zampini {
39830368db7SStefano Zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
39956282151SStefano Zampini   PetscBool      isequal = PETSC_FALSE;
40030368db7SStefano Zampini   PetscErrorCode ierr;
40130368db7SStefano Zampini 
40230368db7SStefano Zampini   PetscFunctionBegin;
40356282151SStefano Zampini   ierr = PetscObjectReference((PetscObject)PrimalVertices);CHKERRQ(ierr);
40456282151SStefano Zampini   if (pcbddc->user_primal_vertices) {
40556282151SStefano Zampini     ierr = ISEqual(PrimalVertices,pcbddc->user_primal_vertices,&isequal);CHKERRQ(ierr);
40656282151SStefano Zampini   }
40730368db7SStefano Zampini   ierr = ISDestroy(&pcbddc->user_primal_vertices);CHKERRQ(ierr);
40830368db7SStefano Zampini   ierr = ISDestroy(&pcbddc->user_primal_vertices_local);CHKERRQ(ierr);
40930368db7SStefano Zampini   pcbddc->user_primal_vertices = PrimalVertices;
41056282151SStefano Zampini   if (!isequal) pcbddc->recompute_topography = PETSC_TRUE;
41130368db7SStefano Zampini   PetscFunctionReturn(0);
41230368db7SStefano Zampini }
41330368db7SStefano Zampini #undef __FUNCT__
41430368db7SStefano Zampini #define __FUNCT__ "PCBDDCSetPrimalVerticesIS"
41530368db7SStefano Zampini /*@
41630368db7SStefano Zampini  PCBDDCSetPrimalVerticesIS - Set additional user defined primal vertices in PCBDDC
41730368db7SStefano Zampini 
41830368db7SStefano Zampini    Collective
41930368db7SStefano Zampini 
42030368db7SStefano Zampini    Input Parameters:
42130368db7SStefano Zampini +  pc - the preconditioning context
42230368db7SStefano Zampini -  PrimalVertices - index set of primal vertices in global numbering (can be empty)
42330368db7SStefano Zampini 
42430368db7SStefano Zampini    Level: intermediate
42530368db7SStefano Zampini 
42630368db7SStefano Zampini    Notes:
42730368db7SStefano Zampini      Any process can list any global node
42830368db7SStefano Zampini 
42930368db7SStefano Zampini .seealso: PCBDDC
43030368db7SStefano Zampini @*/
43130368db7SStefano Zampini PetscErrorCode PCBDDCSetPrimalVerticesIS(PC pc, IS PrimalVertices)
43230368db7SStefano Zampini {
43330368db7SStefano Zampini   PetscErrorCode ierr;
43430368db7SStefano Zampini 
43530368db7SStefano Zampini   PetscFunctionBegin;
43630368db7SStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
43730368db7SStefano Zampini   PetscValidHeaderSpecific(PrimalVertices,IS_CLASSID,2);
43830368db7SStefano Zampini   PetscCheckSameComm(pc,1,PrimalVertices,2);
43930368db7SStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetPrimalVerticesIS_C",(PC,IS),(pc,PrimalVertices));CHKERRQ(ierr);
44030368db7SStefano Zampini   PetscFunctionReturn(0);
44130368db7SStefano Zampini }
4422d505d7fSStefano Zampini 
44330368db7SStefano Zampini #undef __FUNCT__
444674ae819SStefano Zampini #define __FUNCT__ "PCBDDCSetPrimalVerticesLocalIS_BDDC"
445674ae819SStefano Zampini static PetscErrorCode PCBDDCSetPrimalVerticesLocalIS_BDDC(PC pc, IS PrimalVertices)
446674ae819SStefano Zampini {
447674ae819SStefano Zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
44856282151SStefano Zampini   PetscBool      isequal = PETSC_FALSE;
449674ae819SStefano Zampini   PetscErrorCode ierr;
4501e6b0712SBarry Smith 
451674ae819SStefano Zampini   PetscFunctionBegin;
45256282151SStefano Zampini   ierr = PetscObjectReference((PetscObject)PrimalVertices);CHKERRQ(ierr);
45356282151SStefano Zampini   if (pcbddc->user_primal_vertices_local) {
45456282151SStefano Zampini     ierr = ISEqual(PrimalVertices,pcbddc->user_primal_vertices_local,&isequal);CHKERRQ(ierr);
45556282151SStefano Zampini   }
456674ae819SStefano Zampini   ierr = ISDestroy(&pcbddc->user_primal_vertices);CHKERRQ(ierr);
45730368db7SStefano Zampini   ierr = ISDestroy(&pcbddc->user_primal_vertices_local);CHKERRQ(ierr);
45830368db7SStefano Zampini   pcbddc->user_primal_vertices_local = PrimalVertices;
45956282151SStefano Zampini   if (!isequal) pcbddc->recompute_topography = PETSC_TRUE;
460674ae819SStefano Zampini   PetscFunctionReturn(0);
461674ae819SStefano Zampini }
462674ae819SStefano Zampini #undef __FUNCT__
463674ae819SStefano Zampini #define __FUNCT__ "PCBDDCSetPrimalVerticesLocalIS"
464674ae819SStefano Zampini /*@
46528509bceSStefano Zampini  PCBDDCSetPrimalVerticesLocalIS - Set additional user defined primal vertices in PCBDDC
466674ae819SStefano Zampini 
46717eb1463SStefano Zampini    Collective
468674ae819SStefano Zampini 
469674ae819SStefano Zampini    Input Parameters:
470674ae819SStefano Zampini +  pc - the preconditioning context
47117eb1463SStefano Zampini -  PrimalVertices - index set of primal vertices in local numbering (can be empty)
472674ae819SStefano Zampini 
473674ae819SStefano Zampini    Level: intermediate
474674ae819SStefano Zampini 
475674ae819SStefano Zampini    Notes:
476674ae819SStefano Zampini 
477674ae819SStefano Zampini .seealso: PCBDDC
478674ae819SStefano Zampini @*/
479674ae819SStefano Zampini PetscErrorCode PCBDDCSetPrimalVerticesLocalIS(PC pc, IS PrimalVertices)
480674ae819SStefano Zampini {
481674ae819SStefano Zampini   PetscErrorCode ierr;
482674ae819SStefano Zampini 
483674ae819SStefano Zampini   PetscFunctionBegin;
484674ae819SStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
485674ae819SStefano Zampini   PetscValidHeaderSpecific(PrimalVertices,IS_CLASSID,2);
48617eb1463SStefano Zampini   PetscCheckSameComm(pc,1,PrimalVertices,2);
487674ae819SStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetPrimalVerticesLocalIS_C",(PC,IS),(pc,PrimalVertices));CHKERRQ(ierr);
488674ae819SStefano Zampini   PetscFunctionReturn(0);
489674ae819SStefano Zampini }
4902d505d7fSStefano Zampini 
4910c7d97c5SJed Brown #undef __FUNCT__
4924fad6a16SStefano Zampini #define __FUNCT__ "PCBDDCSetCoarseningRatio_BDDC"
4934fad6a16SStefano Zampini static PetscErrorCode PCBDDCSetCoarseningRatio_BDDC(PC pc,PetscInt k)
4944fad6a16SStefano Zampini {
4954fad6a16SStefano Zampini   PC_BDDC  *pcbddc = (PC_BDDC*)pc->data;
4964fad6a16SStefano Zampini 
4974fad6a16SStefano Zampini   PetscFunctionBegin;
4984fad6a16SStefano Zampini   pcbddc->coarsening_ratio = k;
4994fad6a16SStefano Zampini   PetscFunctionReturn(0);
5004fad6a16SStefano Zampini }
5011e6b0712SBarry Smith 
5024fad6a16SStefano Zampini #undef __FUNCT__
5034fad6a16SStefano Zampini #define __FUNCT__ "PCBDDCSetCoarseningRatio"
5044fad6a16SStefano Zampini /*@
50528509bceSStefano Zampini  PCBDDCSetCoarseningRatio - Set coarsening ratio used in multilevel
5064fad6a16SStefano Zampini 
5074fad6a16SStefano Zampini    Logically collective on PC
5084fad6a16SStefano Zampini 
5094fad6a16SStefano Zampini    Input Parameters:
5104fad6a16SStefano Zampini +  pc - the preconditioning context
51128509bceSStefano Zampini -  k - coarsening ratio (H/h at the coarser level)
5124fad6a16SStefano Zampini 
5130f202f7eSStefano Zampini    Options Database Keys:
5140f202f7eSStefano Zampini .    -pc_bddc_coarsening_ratio
5154fad6a16SStefano Zampini 
5164fad6a16SStefano Zampini    Level: intermediate
5174fad6a16SStefano Zampini 
5184fad6a16SStefano Zampini    Notes:
5190f202f7eSStefano Zampini      Approximatively k subdomains at the finer level will be aggregated into a single subdomain at the coarser level
5204fad6a16SStefano Zampini 
5210f202f7eSStefano Zampini .seealso: PCBDDC, PCBDDCSetLevels()
5224fad6a16SStefano Zampini @*/
5234fad6a16SStefano Zampini PetscErrorCode PCBDDCSetCoarseningRatio(PC pc,PetscInt k)
5244fad6a16SStefano Zampini {
5254fad6a16SStefano Zampini   PetscErrorCode ierr;
5264fad6a16SStefano Zampini 
5274fad6a16SStefano Zampini   PetscFunctionBegin;
5284fad6a16SStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
5292b510759SStefano Zampini   PetscValidLogicalCollectiveInt(pc,k,2);
5304fad6a16SStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetCoarseningRatio_C",(PC,PetscInt),(pc,k));CHKERRQ(ierr);
5314fad6a16SStefano Zampini   PetscFunctionReturn(0);
5324fad6a16SStefano Zampini }
5332b510759SStefano Zampini 
534b8ffe317SStefano Zampini /* The following functions (PCBDDCSetUseExactDirichlet PCBDDCSetLevel) are not public */
5352b510759SStefano Zampini #undef __FUNCT__
536b8ffe317SStefano Zampini #define __FUNCT__ "PCBDDCSetUseExactDirichlet_BDDC"
537b8ffe317SStefano Zampini static PetscErrorCode PCBDDCSetUseExactDirichlet_BDDC(PC pc,PetscBool flg)
538b8ffe317SStefano Zampini {
539b8ffe317SStefano Zampini   PC_BDDC  *pcbddc = (PC_BDDC*)pc->data;
540b8ffe317SStefano Zampini 
541b8ffe317SStefano Zampini   PetscFunctionBegin;
54285c4d303SStefano Zampini   pcbddc->use_exact_dirichlet_trick = flg;
543b8ffe317SStefano Zampini   PetscFunctionReturn(0);
544b8ffe317SStefano Zampini }
545b8ffe317SStefano Zampini 
546b8ffe317SStefano Zampini #undef __FUNCT__
547b8ffe317SStefano Zampini #define __FUNCT__ "PCBDDCSetUseExactDirichlet"
548b8ffe317SStefano Zampini PetscErrorCode PCBDDCSetUseExactDirichlet(PC pc,PetscBool flg)
5492b510759SStefano Zampini {
5502b510759SStefano Zampini   PetscErrorCode ierr;
5512b510759SStefano Zampini 
5522b510759SStefano Zampini   PetscFunctionBegin;
5532b510759SStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
554b8ffe317SStefano Zampini   PetscValidLogicalCollectiveBool(pc,flg,2);
555b8ffe317SStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetUseExactDirichlet_C",(PC,PetscBool),(pc,flg));CHKERRQ(ierr);
5562b510759SStefano Zampini   PetscFunctionReturn(0);
5572b510759SStefano Zampini }
5581e6b0712SBarry Smith 
5594fad6a16SStefano Zampini #undef __FUNCT__
5602b510759SStefano Zampini #define __FUNCT__ "PCBDDCSetLevel_BDDC"
5612b510759SStefano Zampini static PetscErrorCode PCBDDCSetLevel_BDDC(PC pc,PetscInt level)
5624fad6a16SStefano Zampini {
5634fad6a16SStefano Zampini   PC_BDDC  *pcbddc = (PC_BDDC*)pc->data;
5644fad6a16SStefano Zampini 
5654fad6a16SStefano Zampini   PetscFunctionBegin;
5662b510759SStefano Zampini   pcbddc->current_level = level;
5674fad6a16SStefano Zampini   PetscFunctionReturn(0);
5684fad6a16SStefano Zampini }
5691e6b0712SBarry Smith 
5704fad6a16SStefano Zampini #undef __FUNCT__
571b8ffe317SStefano Zampini #define __FUNCT__ "PCBDDCSetLevel"
572b8ffe317SStefano Zampini PetscErrorCode PCBDDCSetLevel(PC pc,PetscInt level)
573b8ffe317SStefano Zampini {
574b8ffe317SStefano Zampini   PetscErrorCode ierr;
575b8ffe317SStefano Zampini 
576b8ffe317SStefano Zampini   PetscFunctionBegin;
577b8ffe317SStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
578b8ffe317SStefano Zampini   PetscValidLogicalCollectiveInt(pc,level,2);
579b8ffe317SStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetLevel_C",(PC,PetscInt),(pc,level));CHKERRQ(ierr);
580b8ffe317SStefano Zampini   PetscFunctionReturn(0);
581b8ffe317SStefano Zampini }
582b8ffe317SStefano Zampini 
583b8ffe317SStefano Zampini #undef __FUNCT__
5842b510759SStefano Zampini #define __FUNCT__ "PCBDDCSetLevels_BDDC"
5852b510759SStefano Zampini static PetscErrorCode PCBDDCSetLevels_BDDC(PC pc,PetscInt levels)
5862b510759SStefano Zampini {
5872b510759SStefano Zampini   PC_BDDC  *pcbddc = (PC_BDDC*)pc->data;
5882b510759SStefano Zampini 
5892b510759SStefano Zampini   PetscFunctionBegin;
5902b510759SStefano Zampini   pcbddc->max_levels = levels;
5912b510759SStefano Zampini   PetscFunctionReturn(0);
5922b510759SStefano Zampini }
5932b510759SStefano Zampini 
5942b510759SStefano Zampini #undef __FUNCT__
5952b510759SStefano Zampini #define __FUNCT__ "PCBDDCSetLevels"
5964fad6a16SStefano Zampini /*@
59728509bceSStefano Zampini  PCBDDCSetLevels - Sets the maximum number of levels for multilevel
5984fad6a16SStefano Zampini 
5994fad6a16SStefano Zampini    Logically collective on PC
6004fad6a16SStefano Zampini 
6014fad6a16SStefano Zampini    Input Parameters:
6024fad6a16SStefano Zampini +  pc - the preconditioning context
60328509bceSStefano Zampini -  levels - the maximum number of levels (max 9)
6044fad6a16SStefano Zampini 
6050f202f7eSStefano Zampini    Options Database Keys:
6060f202f7eSStefano Zampini .    -pc_bddc_levels
6074fad6a16SStefano Zampini 
6084fad6a16SStefano Zampini    Level: intermediate
6094fad6a16SStefano Zampini 
6104fad6a16SStefano Zampini    Notes:
6110f202f7eSStefano Zampini      Default value is 0, i.e. traditional one-level BDDC
6124fad6a16SStefano Zampini 
6130f202f7eSStefano Zampini .seealso: PCBDDC, PCBDDCSetCoarseningRatio()
6144fad6a16SStefano Zampini @*/
6152b510759SStefano Zampini PetscErrorCode PCBDDCSetLevels(PC pc,PetscInt levels)
6164fad6a16SStefano Zampini {
6174fad6a16SStefano Zampini   PetscErrorCode ierr;
6184fad6a16SStefano Zampini 
6194fad6a16SStefano Zampini   PetscFunctionBegin;
6204fad6a16SStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
6212b510759SStefano Zampini   PetscValidLogicalCollectiveInt(pc,levels,2);
622312be037SStefano Zampini   if (levels > 99) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Maximum number of levels for bddc is 99\n");
6232b510759SStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetLevels_C",(PC,PetscInt),(pc,levels));CHKERRQ(ierr);
6244fad6a16SStefano Zampini   PetscFunctionReturn(0);
6254fad6a16SStefano Zampini }
6261e6b0712SBarry Smith 
6274fad6a16SStefano Zampini #undef __FUNCT__
6283b03a366Sstefano_zampini #define __FUNCT__ "PCBDDCSetDirichletBoundaries_BDDC"
6293b03a366Sstefano_zampini static PetscErrorCode PCBDDCSetDirichletBoundaries_BDDC(PC pc,IS DirichletBoundaries)
6303b03a366Sstefano_zampini {
6313b03a366Sstefano_zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
63256282151SStefano Zampini   PetscBool      isequal = PETSC_FALSE;
6333b03a366Sstefano_zampini   PetscErrorCode ierr;
6343b03a366Sstefano_zampini 
6353b03a366Sstefano_zampini   PetscFunctionBegin;
63656282151SStefano Zampini   ierr = PetscObjectReference((PetscObject)DirichletBoundaries);CHKERRQ(ierr);
63756282151SStefano Zampini   if (pcbddc->DirichletBoundaries) {
63856282151SStefano Zampini     ierr = ISEqual(DirichletBoundaries,pcbddc->DirichletBoundaries,&isequal);CHKERRQ(ierr);
63956282151SStefano Zampini   }
640785d1243SStefano Zampini   /* last user setting takes precendence -> destroy any other customization */
641785d1243SStefano Zampini   ierr = ISDestroy(&pcbddc->DirichletBoundariesLocal);CHKERRQ(ierr);
6423b03a366Sstefano_zampini   ierr = ISDestroy(&pcbddc->DirichletBoundaries);CHKERRQ(ierr);
64336e030ebSStefano Zampini   pcbddc->DirichletBoundaries = DirichletBoundaries;
64456282151SStefano Zampini   if (!isequal) pcbddc->recompute_topography = PETSC_TRUE;
6453b03a366Sstefano_zampini   PetscFunctionReturn(0);
6463b03a366Sstefano_zampini }
6471e6b0712SBarry Smith 
6483b03a366Sstefano_zampini #undef __FUNCT__
6493b03a366Sstefano_zampini #define __FUNCT__ "PCBDDCSetDirichletBoundaries"
6503b03a366Sstefano_zampini /*@
65128509bceSStefano Zampini  PCBDDCSetDirichletBoundaries - Set IS defining Dirichlet boundaries for the global problem.
6523b03a366Sstefano_zampini 
653785d1243SStefano Zampini    Collective
6543b03a366Sstefano_zampini 
6553b03a366Sstefano_zampini    Input Parameters:
6563b03a366Sstefano_zampini +  pc - the preconditioning context
657785d1243SStefano Zampini -  DirichletBoundaries - parallel IS defining the Dirichlet boundaries
6583b03a366Sstefano_zampini 
6593b03a366Sstefano_zampini    Level: intermediate
6603b03a366Sstefano_zampini 
6610f202f7eSStefano Zampini    Notes:
6620f202f7eSStefano Zampini      Provide the information if you used MatZeroRows/Columns routines. Any process can list any global node
6633b03a366Sstefano_zampini 
6640f202f7eSStefano Zampini .seealso: PCBDDC, PCBDDCSetDirichletBoundariesLocal(), MatZeroRows(), MatZeroRowsColumns()
6653b03a366Sstefano_zampini @*/
6663b03a366Sstefano_zampini PetscErrorCode PCBDDCSetDirichletBoundaries(PC pc,IS DirichletBoundaries)
6673b03a366Sstefano_zampini {
6683b03a366Sstefano_zampini   PetscErrorCode ierr;
6693b03a366Sstefano_zampini 
6703b03a366Sstefano_zampini   PetscFunctionBegin;
6713b03a366Sstefano_zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
672674ae819SStefano Zampini   PetscValidHeaderSpecific(DirichletBoundaries,IS_CLASSID,2);
673785d1243SStefano Zampini   PetscCheckSameComm(pc,1,DirichletBoundaries,2);
6743b03a366Sstefano_zampini   ierr = PetscTryMethod(pc,"PCBDDCSetDirichletBoundaries_C",(PC,IS),(pc,DirichletBoundaries));CHKERRQ(ierr);
6753b03a366Sstefano_zampini   PetscFunctionReturn(0);
6763b03a366Sstefano_zampini }
6771e6b0712SBarry Smith 
6783b03a366Sstefano_zampini #undef __FUNCT__
67982ba6b80SStefano Zampini #define __FUNCT__ "PCBDDCSetDirichletBoundariesLocal_BDDC"
68082ba6b80SStefano Zampini static PetscErrorCode PCBDDCSetDirichletBoundariesLocal_BDDC(PC pc,IS DirichletBoundaries)
6810c7d97c5SJed Brown {
6820c7d97c5SJed Brown   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
68356282151SStefano Zampini   PetscBool      isequal = PETSC_FALSE;
6840c7d97c5SJed Brown   PetscErrorCode ierr;
6850c7d97c5SJed Brown 
6860c7d97c5SJed Brown   PetscFunctionBegin;
68756282151SStefano Zampini   ierr = PetscObjectReference((PetscObject)DirichletBoundaries);CHKERRQ(ierr);
68856282151SStefano Zampini   if (pcbddc->DirichletBoundariesLocal) {
68956282151SStefano Zampini     ierr = ISEqual(DirichletBoundaries,pcbddc->DirichletBoundariesLocal,&isequal);CHKERRQ(ierr);
69056282151SStefano Zampini   }
691785d1243SStefano Zampini   /* last user setting takes precendence -> destroy any other customization */
692785d1243SStefano Zampini   ierr = ISDestroy(&pcbddc->DirichletBoundariesLocal);CHKERRQ(ierr);
6930c7d97c5SJed Brown   ierr = ISDestroy(&pcbddc->DirichletBoundaries);CHKERRQ(ierr);
694785d1243SStefano Zampini   pcbddc->DirichletBoundariesLocal = DirichletBoundaries;
69556282151SStefano Zampini   if (!isequal) pcbddc->recompute_topography = PETSC_TRUE;
6960c7d97c5SJed Brown   PetscFunctionReturn(0);
6970c7d97c5SJed Brown }
6980c7d97c5SJed Brown 
6990c7d97c5SJed Brown #undef __FUNCT__
70082ba6b80SStefano Zampini #define __FUNCT__ "PCBDDCSetDirichletBoundariesLocal"
7019c0446d6SStefano Zampini /*@
70282ba6b80SStefano Zampini  PCBDDCSetDirichletBoundariesLocal - Set IS defining Dirichlet boundaries for the global problem in local ordering.
7039c0446d6SStefano Zampini 
704785d1243SStefano Zampini    Collective
70553cdbc3dSStefano Zampini 
70653cdbc3dSStefano Zampini    Input Parameters:
70753cdbc3dSStefano Zampini +  pc - the preconditioning context
70882ba6b80SStefano Zampini -  DirichletBoundaries - parallel IS defining the Dirichlet boundaries (in local ordering)
70953cdbc3dSStefano Zampini 
71053cdbc3dSStefano Zampini    Level: intermediate
71153cdbc3dSStefano Zampini 
7129c0446d6SStefano Zampini    Notes:
71353cdbc3dSStefano Zampini 
7140f202f7eSStefano Zampini .seealso: PCBDDC, PCBDDCSetDirichletBoundaries(), MatZeroRows(), MatZeroRowsColumns()
71553cdbc3dSStefano Zampini @*/
71682ba6b80SStefano Zampini PetscErrorCode PCBDDCSetDirichletBoundariesLocal(PC pc,IS DirichletBoundaries)
7170c7d97c5SJed Brown {
7180c7d97c5SJed Brown   PetscErrorCode ierr;
7190c7d97c5SJed Brown 
7200c7d97c5SJed Brown   PetscFunctionBegin;
7210c7d97c5SJed Brown   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
7220c7d97c5SJed Brown   PetscValidHeaderSpecific(DirichletBoundaries,IS_CLASSID,2);
72382ba6b80SStefano Zampini   PetscCheckSameComm(pc,1,DirichletBoundaries,2);
72482ba6b80SStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetDirichletBoundariesLocal_C",(PC,IS),(pc,DirichletBoundaries));CHKERRQ(ierr);
7250c7d97c5SJed Brown   PetscFunctionReturn(0);
7260c7d97c5SJed Brown }
7270c7d97c5SJed Brown 
7280c7d97c5SJed Brown #undef __FUNCT__
7290c7d97c5SJed Brown #define __FUNCT__ "PCBDDCSetNeumannBoundaries_BDDC"
73053cdbc3dSStefano Zampini static PetscErrorCode PCBDDCSetNeumannBoundaries_BDDC(PC pc,IS NeumannBoundaries)
7310c7d97c5SJed Brown {
7320c7d97c5SJed Brown   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
73356282151SStefano Zampini   PetscBool      isequal = PETSC_FALSE;
73453cdbc3dSStefano Zampini   PetscErrorCode ierr;
7350c7d97c5SJed Brown 
7360c7d97c5SJed Brown   PetscFunctionBegin;
73756282151SStefano Zampini   ierr = PetscObjectReference((PetscObject)NeumannBoundaries);CHKERRQ(ierr);
73856282151SStefano Zampini   if (pcbddc->NeumannBoundaries) {
73956282151SStefano Zampini     ierr = ISEqual(NeumannBoundaries,pcbddc->NeumannBoundaries,&isequal);CHKERRQ(ierr);
74056282151SStefano Zampini   }
741785d1243SStefano Zampini   /* last user setting takes precendence -> destroy any other customization */
742785d1243SStefano Zampini   ierr = ISDestroy(&pcbddc->NeumannBoundariesLocal);CHKERRQ(ierr);
74353cdbc3dSStefano Zampini   ierr = ISDestroy(&pcbddc->NeumannBoundaries);CHKERRQ(ierr);
74436e030ebSStefano Zampini   pcbddc->NeumannBoundaries = NeumannBoundaries;
74556282151SStefano Zampini   if (!isequal) pcbddc->recompute_topography = PETSC_TRUE;
7460c7d97c5SJed Brown   PetscFunctionReturn(0);
7470c7d97c5SJed Brown }
7481e6b0712SBarry Smith 
7490c7d97c5SJed Brown #undef __FUNCT__
7500c7d97c5SJed Brown #define __FUNCT__ "PCBDDCSetNeumannBoundaries"
75157527edcSJed Brown /*@
75228509bceSStefano Zampini  PCBDDCSetNeumannBoundaries - Set IS defining Neumann boundaries for the global problem.
75357527edcSJed Brown 
754785d1243SStefano Zampini    Collective
75557527edcSJed Brown 
75657527edcSJed Brown    Input Parameters:
75757527edcSJed Brown +  pc - the preconditioning context
758785d1243SStefano Zampini -  NeumannBoundaries - parallel IS defining the Neumann boundaries
75957527edcSJed Brown 
76057527edcSJed Brown    Level: intermediate
76157527edcSJed Brown 
7620f202f7eSStefano Zampini    Notes:
7630f202f7eSStefano Zampini      Any process can list any global node
76457527edcSJed Brown 
7650f202f7eSStefano Zampini .seealso: PCBDDC, PCBDDCSetNeumannBoundariesLocal()
76657527edcSJed Brown @*/
76753cdbc3dSStefano Zampini PetscErrorCode PCBDDCSetNeumannBoundaries(PC pc,IS NeumannBoundaries)
7680c7d97c5SJed Brown {
7690c7d97c5SJed Brown   PetscErrorCode ierr;
7700c7d97c5SJed Brown 
7710c7d97c5SJed Brown   PetscFunctionBegin;
7720c7d97c5SJed Brown   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
773674ae819SStefano Zampini   PetscValidHeaderSpecific(NeumannBoundaries,IS_CLASSID,2);
774785d1243SStefano Zampini   PetscCheckSameComm(pc,1,NeumannBoundaries,2);
77553cdbc3dSStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetNeumannBoundaries_C",(PC,IS),(pc,NeumannBoundaries));CHKERRQ(ierr);
77653cdbc3dSStefano Zampini   PetscFunctionReturn(0);
77753cdbc3dSStefano Zampini }
7781e6b0712SBarry Smith 
77953cdbc3dSStefano Zampini #undef __FUNCT__
78082ba6b80SStefano Zampini #define __FUNCT__ "PCBDDCSetNeumannBoundariesLocal_BDDC"
78182ba6b80SStefano Zampini static PetscErrorCode PCBDDCSetNeumannBoundariesLocal_BDDC(PC pc,IS NeumannBoundaries)
7820c7d97c5SJed Brown {
7830c7d97c5SJed Brown   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
78456282151SStefano Zampini   PetscBool      isequal = PETSC_FALSE;
7850c7d97c5SJed Brown   PetscErrorCode ierr;
7860c7d97c5SJed Brown 
7870c7d97c5SJed Brown   PetscFunctionBegin;
78856282151SStefano Zampini   ierr = PetscObjectReference((PetscObject)NeumannBoundaries);CHKERRQ(ierr);
78956282151SStefano Zampini   if (pcbddc->NeumannBoundariesLocal) {
79056282151SStefano Zampini     ierr = ISEqual(NeumannBoundaries,pcbddc->NeumannBoundariesLocal,&isequal);CHKERRQ(ierr);
79156282151SStefano Zampini   }
792785d1243SStefano Zampini   /* last user setting takes precendence -> destroy any other customization */
793785d1243SStefano Zampini   ierr = ISDestroy(&pcbddc->NeumannBoundariesLocal);CHKERRQ(ierr);
7940c7d97c5SJed Brown   ierr = ISDestroy(&pcbddc->NeumannBoundaries);CHKERRQ(ierr);
795785d1243SStefano Zampini   pcbddc->NeumannBoundariesLocal = NeumannBoundaries;
79656282151SStefano Zampini   if (!isequal) pcbddc->recompute_topography = PETSC_TRUE;
7970c7d97c5SJed Brown   PetscFunctionReturn(0);
7980c7d97c5SJed Brown }
7990c7d97c5SJed Brown 
8000c7d97c5SJed Brown #undef __FUNCT__
80182ba6b80SStefano Zampini #define __FUNCT__ "PCBDDCSetNeumannBoundariesLocal"
8020c7d97c5SJed Brown /*@
80382ba6b80SStefano Zampini  PCBDDCSetNeumannBoundariesLocal - Set IS defining Neumann boundaries for the global problem in local ordering.
8040c7d97c5SJed Brown 
805785d1243SStefano Zampini    Collective
8060c7d97c5SJed Brown 
8070c7d97c5SJed Brown    Input Parameters:
8080c7d97c5SJed Brown +  pc - the preconditioning context
80982ba6b80SStefano Zampini -  NeumannBoundaries - parallel IS defining the subdomain part of Neumann boundaries (in local ordering)
8100c7d97c5SJed Brown 
8110c7d97c5SJed Brown    Level: intermediate
8120c7d97c5SJed Brown 
8130c7d97c5SJed Brown    Notes:
8140c7d97c5SJed Brown 
8150f202f7eSStefano Zampini .seealso: PCBDDC, PCBDDCSetNeumannBoundaries()
8160c7d97c5SJed Brown @*/
81782ba6b80SStefano Zampini PetscErrorCode PCBDDCSetNeumannBoundariesLocal(PC pc,IS NeumannBoundaries)
8180c7d97c5SJed Brown {
8190c7d97c5SJed Brown   PetscErrorCode ierr;
8200c7d97c5SJed Brown 
8210c7d97c5SJed Brown   PetscFunctionBegin;
8220c7d97c5SJed Brown   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
8230c7d97c5SJed Brown   PetscValidHeaderSpecific(NeumannBoundaries,IS_CLASSID,2);
82482ba6b80SStefano Zampini   PetscCheckSameComm(pc,1,NeumannBoundaries,2);
82582ba6b80SStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetNeumannBoundariesLocal_C",(PC,IS),(pc,NeumannBoundaries));CHKERRQ(ierr);
82653cdbc3dSStefano Zampini   PetscFunctionReturn(0);
82753cdbc3dSStefano Zampini }
82853cdbc3dSStefano Zampini 
82953cdbc3dSStefano Zampini #undef __FUNCT__
830da1bb401SStefano Zampini #define __FUNCT__ "PCBDDCGetDirichletBoundaries_BDDC"
831da1bb401SStefano Zampini static PetscErrorCode PCBDDCGetDirichletBoundaries_BDDC(PC pc,IS *DirichletBoundaries)
832da1bb401SStefano Zampini {
833da1bb401SStefano Zampini   PC_BDDC  *pcbddc = (PC_BDDC*)pc->data;
834da1bb401SStefano Zampini 
835da1bb401SStefano Zampini   PetscFunctionBegin;
836da1bb401SStefano Zampini   *DirichletBoundaries = pcbddc->DirichletBoundaries;
837da1bb401SStefano Zampini   PetscFunctionReturn(0);
838da1bb401SStefano Zampini }
8391e6b0712SBarry Smith 
840da1bb401SStefano Zampini #undef __FUNCT__
841da1bb401SStefano Zampini #define __FUNCT__ "PCBDDCGetDirichletBoundaries"
842da1bb401SStefano Zampini /*@
843785d1243SStefano Zampini  PCBDDCGetDirichletBoundaries - Get parallel IS for Dirichlet boundaries
844da1bb401SStefano Zampini 
845785d1243SStefano Zampini    Collective
846785d1243SStefano Zampini 
847785d1243SStefano Zampini    Input Parameters:
848785d1243SStefano Zampini .  pc - the preconditioning context
849785d1243SStefano Zampini 
850785d1243SStefano Zampini    Output Parameters:
851785d1243SStefano Zampini .  DirichletBoundaries - index set defining the Dirichlet boundaries
852785d1243SStefano Zampini 
853785d1243SStefano Zampini    Level: intermediate
854785d1243SStefano Zampini 
8550f202f7eSStefano Zampini    Notes:
8560f202f7eSStefano Zampini      The IS returned (if any) is the same passed in earlier by the user with PCBDDCSetDirichletBoundaries
857785d1243SStefano Zampini 
858785d1243SStefano Zampini .seealso: PCBDDC
859785d1243SStefano Zampini @*/
860785d1243SStefano Zampini PetscErrorCode PCBDDCGetDirichletBoundaries(PC pc,IS *DirichletBoundaries)
861785d1243SStefano Zampini {
862785d1243SStefano Zampini   PetscErrorCode ierr;
863785d1243SStefano Zampini 
864785d1243SStefano Zampini   PetscFunctionBegin;
865785d1243SStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
866785d1243SStefano Zampini   ierr = PetscUseMethod(pc,"PCBDDCGetDirichletBoundaries_C",(PC,IS*),(pc,DirichletBoundaries));CHKERRQ(ierr);
867785d1243SStefano Zampini   PetscFunctionReturn(0);
868785d1243SStefano Zampini }
869785d1243SStefano Zampini 
870785d1243SStefano Zampini #undef __FUNCT__
871785d1243SStefano Zampini #define __FUNCT__ "PCBDDCGetDirichletBoundariesLocal_BDDC"
872785d1243SStefano Zampini static PetscErrorCode PCBDDCGetDirichletBoundariesLocal_BDDC(PC pc,IS *DirichletBoundaries)
873785d1243SStefano Zampini {
874785d1243SStefano Zampini   PC_BDDC  *pcbddc = (PC_BDDC*)pc->data;
875785d1243SStefano Zampini 
876785d1243SStefano Zampini   PetscFunctionBegin;
877785d1243SStefano Zampini   *DirichletBoundaries = pcbddc->DirichletBoundariesLocal;
878785d1243SStefano Zampini   PetscFunctionReturn(0);
879785d1243SStefano Zampini }
880785d1243SStefano Zampini 
881785d1243SStefano Zampini #undef __FUNCT__
88282ba6b80SStefano Zampini #define __FUNCT__ "PCBDDCGetDirichletBoundariesLocal"
883da1bb401SStefano Zampini /*@
88482ba6b80SStefano Zampini  PCBDDCGetDirichletBoundariesLocal - Get parallel IS for Dirichlet boundaries (in local ordering)
885da1bb401SStefano Zampini 
886785d1243SStefano Zampini    Collective
887da1bb401SStefano Zampini 
888da1bb401SStefano Zampini    Input Parameters:
88928509bceSStefano Zampini .  pc - the preconditioning context
890da1bb401SStefano Zampini 
891da1bb401SStefano Zampini    Output Parameters:
89228509bceSStefano Zampini .  DirichletBoundaries - index set defining the subdomain part of Dirichlet boundaries
893da1bb401SStefano Zampini 
894da1bb401SStefano Zampini    Level: intermediate
895da1bb401SStefano Zampini 
896da1bb401SStefano Zampini    Notes:
8970f202f7eSStefano Zampini      The IS returned could be the same passed in earlier by the user (if provided with PCBDDCSetDirichletBoundariesLocal) or a global-to-local map of the global IS (if provided with PCBDDCSetDirichletBoundaries).
8980f202f7eSStefano Zampini           In the latter case, the IS will be available after PCSetUp.
899da1bb401SStefano Zampini 
900da1bb401SStefano Zampini .seealso: PCBDDC
901da1bb401SStefano Zampini @*/
90282ba6b80SStefano Zampini PetscErrorCode PCBDDCGetDirichletBoundariesLocal(PC pc,IS *DirichletBoundaries)
903da1bb401SStefano Zampini {
904da1bb401SStefano Zampini   PetscErrorCode ierr;
905da1bb401SStefano Zampini 
906da1bb401SStefano Zampini   PetscFunctionBegin;
907da1bb401SStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
90882ba6b80SStefano Zampini   ierr = PetscUseMethod(pc,"PCBDDCGetDirichletBoundariesLocal_C",(PC,IS*),(pc,DirichletBoundaries));CHKERRQ(ierr);
909da1bb401SStefano Zampini   PetscFunctionReturn(0);
910da1bb401SStefano Zampini }
9111e6b0712SBarry Smith 
912da1bb401SStefano Zampini #undef __FUNCT__
91353cdbc3dSStefano Zampini #define __FUNCT__ "PCBDDCGetNeumannBoundaries_BDDC"
91453cdbc3dSStefano Zampini static PetscErrorCode PCBDDCGetNeumannBoundaries_BDDC(PC pc,IS *NeumannBoundaries)
91553cdbc3dSStefano Zampini {
91653cdbc3dSStefano Zampini   PC_BDDC  *pcbddc = (PC_BDDC*)pc->data;
91753cdbc3dSStefano Zampini 
91853cdbc3dSStefano Zampini   PetscFunctionBegin;
91953cdbc3dSStefano Zampini   *NeumannBoundaries = pcbddc->NeumannBoundaries;
92053cdbc3dSStefano Zampini   PetscFunctionReturn(0);
92153cdbc3dSStefano Zampini }
9221e6b0712SBarry Smith 
92353cdbc3dSStefano Zampini #undef __FUNCT__
92453cdbc3dSStefano Zampini #define __FUNCT__ "PCBDDCGetNeumannBoundaries"
92553cdbc3dSStefano Zampini /*@
926785d1243SStefano Zampini  PCBDDCGetNeumannBoundaries - Get parallel IS for Neumann boundaries
92753cdbc3dSStefano Zampini 
928785d1243SStefano Zampini    Collective
929785d1243SStefano Zampini 
930785d1243SStefano Zampini    Input Parameters:
931785d1243SStefano Zampini .  pc - the preconditioning context
932785d1243SStefano Zampini 
933785d1243SStefano Zampini    Output Parameters:
934785d1243SStefano Zampini .  NeumannBoundaries - index set defining the Neumann boundaries
935785d1243SStefano Zampini 
936785d1243SStefano Zampini    Level: intermediate
937785d1243SStefano Zampini 
9380f202f7eSStefano Zampini    Notes:
9390f202f7eSStefano Zampini      The IS returned (if any) is the same passed in earlier by the user with PCBDDCSetNeumannBoundaries
940785d1243SStefano Zampini 
941785d1243SStefano Zampini .seealso: PCBDDC
942785d1243SStefano Zampini @*/
943785d1243SStefano Zampini PetscErrorCode PCBDDCGetNeumannBoundaries(PC pc,IS *NeumannBoundaries)
944785d1243SStefano Zampini {
945785d1243SStefano Zampini   PetscErrorCode ierr;
946785d1243SStefano Zampini 
947785d1243SStefano Zampini   PetscFunctionBegin;
948785d1243SStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
949785d1243SStefano Zampini   ierr = PetscUseMethod(pc,"PCBDDCGetNeumannBoundaries_C",(PC,IS*),(pc,NeumannBoundaries));CHKERRQ(ierr);
950785d1243SStefano Zampini   PetscFunctionReturn(0);
951785d1243SStefano Zampini }
952785d1243SStefano Zampini 
953785d1243SStefano Zampini #undef __FUNCT__
954785d1243SStefano Zampini #define __FUNCT__ "PCBDDCGetNeumannBoundariesLocal_BDDC"
955785d1243SStefano Zampini static PetscErrorCode PCBDDCGetNeumannBoundariesLocal_BDDC(PC pc,IS *NeumannBoundaries)
956785d1243SStefano Zampini {
957785d1243SStefano Zampini   PC_BDDC  *pcbddc = (PC_BDDC*)pc->data;
958785d1243SStefano Zampini 
959785d1243SStefano Zampini   PetscFunctionBegin;
960785d1243SStefano Zampini   *NeumannBoundaries = pcbddc->NeumannBoundariesLocal;
961785d1243SStefano Zampini   PetscFunctionReturn(0);
962785d1243SStefano Zampini }
963785d1243SStefano Zampini 
964785d1243SStefano Zampini #undef __FUNCT__
96582ba6b80SStefano Zampini #define __FUNCT__ "PCBDDCGetNeumannBoundariesLocal"
96653cdbc3dSStefano Zampini /*@
96782ba6b80SStefano Zampini  PCBDDCGetNeumannBoundariesLocal - Get parallel IS for Neumann boundaries (in local ordering)
96853cdbc3dSStefano Zampini 
969785d1243SStefano Zampini    Collective
97053cdbc3dSStefano Zampini 
97153cdbc3dSStefano Zampini    Input Parameters:
97228509bceSStefano Zampini .  pc - the preconditioning context
97353cdbc3dSStefano Zampini 
97453cdbc3dSStefano Zampini    Output Parameters:
97528509bceSStefano Zampini .  NeumannBoundaries - index set defining the subdomain part of Neumann boundaries
97653cdbc3dSStefano Zampini 
97753cdbc3dSStefano Zampini    Level: intermediate
97853cdbc3dSStefano Zampini 
97953cdbc3dSStefano Zampini    Notes:
9800f202f7eSStefano Zampini      The IS returned could be the same passed in earlier by the user (if provided with PCBDDCSetNeumannBoundariesLocal) or a global-to-local map of the global IS (if provided with PCBDDCSetNeumannBoundaries).
9810f202f7eSStefano Zampini           In the latter case, the IS will be available after PCSetUp.
98253cdbc3dSStefano Zampini 
98353cdbc3dSStefano Zampini .seealso: PCBDDC
98453cdbc3dSStefano Zampini @*/
98582ba6b80SStefano Zampini PetscErrorCode PCBDDCGetNeumannBoundariesLocal(PC pc,IS *NeumannBoundaries)
98653cdbc3dSStefano Zampini {
98753cdbc3dSStefano Zampini   PetscErrorCode ierr;
98853cdbc3dSStefano Zampini 
98953cdbc3dSStefano Zampini   PetscFunctionBegin;
99053cdbc3dSStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
99182ba6b80SStefano Zampini   ierr = PetscUseMethod(pc,"PCBDDCGetNeumannBoundariesLocal_C",(PC,IS*),(pc,NeumannBoundaries));CHKERRQ(ierr);
9920c7d97c5SJed Brown   PetscFunctionReturn(0);
9930c7d97c5SJed Brown }
9941e6b0712SBarry Smith 
99536e030ebSStefano Zampini #undef __FUNCT__
996da1bb401SStefano Zampini #define __FUNCT__ "PCBDDCSetLocalAdjacencyGraph_BDDC"
9971a83f524SJed Brown static PetscErrorCode PCBDDCSetLocalAdjacencyGraph_BDDC(PC pc, PetscInt nvtxs,const PetscInt xadj[],const PetscInt adjncy[], PetscCopyMode copymode)
99836e030ebSStefano Zampini {
99936e030ebSStefano Zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
1000da1bb401SStefano Zampini   PCBDDCGraph    mat_graph = pcbddc->mat_graph;
100156282151SStefano Zampini   PetscBool      same_data = PETSC_FALSE;
1002da1bb401SStefano Zampini   PetscErrorCode ierr;
100336e030ebSStefano Zampini 
100436e030ebSStefano Zampini   PetscFunctionBegin;
10058687889aSStefano Zampini   if (!nvtxs) {
100604194a47SStefano Zampini     if (copymode == PETSC_OWN_POINTER) {
100704194a47SStefano Zampini       ierr = PetscFree(xadj);CHKERRQ(ierr);
100804194a47SStefano Zampini       ierr = PetscFree(adjncy);CHKERRQ(ierr);
100904194a47SStefano Zampini     }
10108687889aSStefano Zampini     ierr = PCBDDCGraphResetCSR(mat_graph);CHKERRQ(ierr);
10118687889aSStefano Zampini     PetscFunctionReturn(0);
10128687889aSStefano Zampini   }
101366da6bd7Sstefano_zampini   if (mat_graph->nvtxs == nvtxs && mat_graph->freecsr) { /* we own the data */
101456282151SStefano Zampini     if (mat_graph->xadj == xadj && mat_graph->adjncy == adjncy) same_data = PETSC_TRUE;
101556282151SStefano Zampini     if (!same_data && mat_graph->xadj[nvtxs] == xadj[nvtxs]) {
10162d505d7fSStefano Zampini       ierr = PetscMemcmp(xadj,mat_graph->xadj,(nvtxs+1)*sizeof(PetscInt),&same_data);CHKERRQ(ierr);
10172d505d7fSStefano Zampini       if (same_data) {
10182d505d7fSStefano Zampini         ierr = PetscMemcmp(adjncy,mat_graph->adjncy,xadj[nvtxs]*sizeof(PetscInt),&same_data);CHKERRQ(ierr);
10192d505d7fSStefano Zampini       }
102056282151SStefano Zampini     }
102156282151SStefano Zampini   }
102256282151SStefano Zampini   if (!same_data) {
1023674ae819SStefano Zampini     /* free old CSR */
1024674ae819SStefano Zampini     ierr = PCBDDCGraphResetCSR(mat_graph);CHKERRQ(ierr);
1025674ae819SStefano Zampini     /* get CSR into graph structure */
1026da1bb401SStefano Zampini     if (copymode == PETSC_COPY_VALUES) {
1027854ce69bSBarry Smith       ierr = PetscMalloc1(nvtxs+1,&mat_graph->xadj);CHKERRQ(ierr);
1028785e854fSJed Brown       ierr = PetscMalloc1(xadj[nvtxs],&mat_graph->adjncy);CHKERRQ(ierr);
1029674ae819SStefano Zampini       ierr = PetscMemcpy(mat_graph->xadj,xadj,(nvtxs+1)*sizeof(PetscInt));CHKERRQ(ierr);
1030674ae819SStefano Zampini       ierr = PetscMemcpy(mat_graph->adjncy,adjncy,xadj[nvtxs]*sizeof(PetscInt));CHKERRQ(ierr);
1031a1dbd327SStefano Zampini       mat_graph->freecsr = PETSC_TRUE;
1032da1bb401SStefano Zampini     } else if (copymode == PETSC_OWN_POINTER) {
10331a83f524SJed Brown       mat_graph->xadj    = (PetscInt*)xadj;
10341a83f524SJed Brown       mat_graph->adjncy  = (PetscInt*)adjncy;
1035a1dbd327SStefano Zampini       mat_graph->freecsr = PETSC_TRUE;
1036a1dbd327SStefano Zampini     } else if (copymode == PETSC_USE_POINTER) {
1037a1dbd327SStefano Zampini       mat_graph->xadj    = (PetscInt*)xadj;
1038a1dbd327SStefano Zampini       mat_graph->adjncy  = (PetscInt*)adjncy;
1039a1dbd327SStefano Zampini       mat_graph->freecsr = PETSC_FALSE;
1040a1dbd327SStefano Zampini     } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unsupported copy mode %d",copymode);
1041575ad6abSStefano Zampini     mat_graph->nvtxs_csr = nvtxs;
104256282151SStefano Zampini     pcbddc->recompute_topography = PETSC_TRUE;
104356282151SStefano Zampini   }
104436e030ebSStefano Zampini   PetscFunctionReturn(0);
104536e030ebSStefano Zampini }
10461e6b0712SBarry Smith 
104736e030ebSStefano Zampini #undef __FUNCT__
1048da1bb401SStefano Zampini #define __FUNCT__ "PCBDDCSetLocalAdjacencyGraph"
104936e030ebSStefano Zampini /*@
105054fffbccSStefano Zampini  PCBDDCSetLocalAdjacencyGraph - Set adjacency structure (CSR graph) of the local degrees of freedom.
105136e030ebSStefano Zampini 
105236e030ebSStefano Zampini    Not collective
105336e030ebSStefano Zampini 
105436e030ebSStefano Zampini    Input Parameters:
105554fffbccSStefano Zampini +  pc - the preconditioning context.
105654fffbccSStefano Zampini .  nvtxs - number of local vertices of the graph (i.e., the number of local dofs).
105754fffbccSStefano Zampini .  xadj, adjncy - the connectivity of the dofs in CSR format.
105854fffbccSStefano Zampini -  copymode - supported modes are PETSC_COPY_VALUES, PETSC_USE_POINTER or PETSC_OWN_POINTER.
105936e030ebSStefano Zampini 
106036e030ebSStefano Zampini    Level: intermediate
106136e030ebSStefano Zampini 
106254fffbccSStefano Zampini    Notes: A dof is considered connected with all local dofs if xadj[dof+1]-xadj[dof] == 1 and adjncy[xadj[dof]] is negative.
106336e030ebSStefano Zampini 
106428509bceSStefano Zampini .seealso: PCBDDC,PetscCopyMode
106536e030ebSStefano Zampini @*/
10661a83f524SJed Brown PetscErrorCode PCBDDCSetLocalAdjacencyGraph(PC pc,PetscInt nvtxs,const PetscInt xadj[],const PetscInt adjncy[], PetscCopyMode copymode)
106736e030ebSStefano Zampini {
1068575ad6abSStefano Zampini   void (*f)(void) = 0;
106936e030ebSStefano Zampini   PetscErrorCode ierr;
107036e030ebSStefano Zampini 
107136e030ebSStefano Zampini   PetscFunctionBegin;
107236e030ebSStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
10738687889aSStefano Zampini   if (nvtxs) {
1074674ae819SStefano Zampini     PetscValidIntPointer(xadj,3);
10751633d1f0SStefano Zampini     if (xadj[nvtxs]) PetscValidIntPointer(adjncy,4);
10768687889aSStefano Zampini   }
10771a83f524SJed Brown   ierr = PetscTryMethod(pc,"PCBDDCSetLocalAdjacencyGraph_C",(PC,PetscInt,const PetscInt[],const PetscInt[],PetscCopyMode),(pc,nvtxs,xadj,adjncy,copymode));CHKERRQ(ierr);
1078575ad6abSStefano Zampini   /* free arrays if PCBDDC is not the PC type */
1079575ad6abSStefano Zampini   ierr = PetscObjectQueryFunction((PetscObject)pc,"PCBDDCSetLocalAdjacencyGraph_C",&f);CHKERRQ(ierr);
1080575ad6abSStefano Zampini   if (!f && copymode == PETSC_OWN_POINTER) {
1081575ad6abSStefano Zampini     ierr = PetscFree(xadj);CHKERRQ(ierr);
1082575ad6abSStefano Zampini     ierr = PetscFree(adjncy);CHKERRQ(ierr);
1083da1bb401SStefano Zampini   }
108436e030ebSStefano Zampini   PetscFunctionReturn(0);
108536e030ebSStefano Zampini }
10861e6b0712SBarry Smith 
10879c0446d6SStefano Zampini #undef __FUNCT__
108863602bcaSStefano Zampini #define __FUNCT__ "PCBDDCSetDofsSplittingLocal_BDDC"
108963602bcaSStefano Zampini static PetscErrorCode PCBDDCSetDofsSplittingLocal_BDDC(PC pc,PetscInt n_is, IS ISForDofs[])
109063602bcaSStefano Zampini {
109163602bcaSStefano Zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
109263602bcaSStefano Zampini   PetscInt       i;
109356282151SStefano Zampini   PetscBool      isequal = PETSC_FALSE;
109463602bcaSStefano Zampini   PetscErrorCode ierr;
109563602bcaSStefano Zampini 
109663602bcaSStefano Zampini   PetscFunctionBegin;
109756282151SStefano Zampini   if (pcbddc->n_ISForDofsLocal == n_is) {
109856282151SStefano Zampini     for (i=0;i<n_is;i++) {
109956282151SStefano Zampini       PetscBool isequalt;
110056282151SStefano Zampini       ierr = ISEqual(ISForDofs[i],pcbddc->ISForDofsLocal[i],&isequalt);CHKERRQ(ierr);
110156282151SStefano Zampini       if (!isequalt) break;
110256282151SStefano Zampini     }
110356282151SStefano Zampini     if (i == n_is) isequal = PETSC_TRUE;
110456282151SStefano Zampini   }
110556282151SStefano Zampini   for (i=0;i<n_is;i++) {
110656282151SStefano Zampini     ierr = PetscObjectReference((PetscObject)ISForDofs[i]);CHKERRQ(ierr);
110756282151SStefano Zampini   }
110863602bcaSStefano Zampini   /* Destroy ISes if they were already set */
110963602bcaSStefano Zampini   for (i=0;i<pcbddc->n_ISForDofsLocal;i++) {
111063602bcaSStefano Zampini     ierr = ISDestroy(&pcbddc->ISForDofsLocal[i]);CHKERRQ(ierr);
111163602bcaSStefano Zampini   }
111263602bcaSStefano Zampini   ierr = PetscFree(pcbddc->ISForDofsLocal);CHKERRQ(ierr);
111363602bcaSStefano Zampini   /* last user setting takes precendence -> destroy any other customization */
111463602bcaSStefano Zampini   for (i=0;i<pcbddc->n_ISForDofs;i++) {
111563602bcaSStefano Zampini     ierr = ISDestroy(&pcbddc->ISForDofs[i]);CHKERRQ(ierr);
111663602bcaSStefano Zampini   }
111763602bcaSStefano Zampini   ierr = PetscFree(pcbddc->ISForDofs);CHKERRQ(ierr);
111863602bcaSStefano Zampini   pcbddc->n_ISForDofs = 0;
111963602bcaSStefano Zampini   /* allocate space then set */
1120d02579f5SStefano Zampini   if (n_is) {
1121d02579f5SStefano Zampini     ierr = PetscMalloc1(n_is,&pcbddc->ISForDofsLocal);CHKERRQ(ierr);
1122d02579f5SStefano Zampini   }
112363602bcaSStefano Zampini   for (i=0;i<n_is;i++) {
112463602bcaSStefano Zampini     pcbddc->ISForDofsLocal[i] = ISForDofs[i];
112563602bcaSStefano Zampini   }
112663602bcaSStefano Zampini   pcbddc->n_ISForDofsLocal = n_is;
112763602bcaSStefano Zampini   if (n_is) pcbddc->user_provided_isfordofs = PETSC_TRUE;
112856282151SStefano Zampini   if (!isequal) pcbddc->recompute_topography = PETSC_TRUE;
112963602bcaSStefano Zampini   PetscFunctionReturn(0);
113063602bcaSStefano Zampini }
113163602bcaSStefano Zampini 
113263602bcaSStefano Zampini #undef __FUNCT__
113363602bcaSStefano Zampini #define __FUNCT__ "PCBDDCSetDofsSplittingLocal"
113463602bcaSStefano Zampini /*@
113563602bcaSStefano Zampini  PCBDDCSetDofsSplittingLocal - Set index sets defining fields of the local subdomain matrix
113663602bcaSStefano Zampini 
113763602bcaSStefano Zampini    Collective
113863602bcaSStefano Zampini 
113963602bcaSStefano Zampini    Input Parameters:
114063602bcaSStefano Zampini +  pc - the preconditioning context
11410f202f7eSStefano Zampini .  n_is - number of index sets defining the fields
11420f202f7eSStefano Zampini -  ISForDofs - array of IS describing the fields in local ordering
114363602bcaSStefano Zampini 
114463602bcaSStefano Zampini    Level: intermediate
114563602bcaSStefano Zampini 
11460f202f7eSStefano Zampini    Notes:
11470f202f7eSStefano Zampini      n_is should be the same among processes. Not all nodes need to be listed: unlisted nodes will belong to the complement field.
114863602bcaSStefano Zampini 
114963602bcaSStefano Zampini .seealso: PCBDDC
115063602bcaSStefano Zampini @*/
115163602bcaSStefano Zampini PetscErrorCode PCBDDCSetDofsSplittingLocal(PC pc,PetscInt n_is, IS ISForDofs[])
115263602bcaSStefano Zampini {
115363602bcaSStefano Zampini   PetscInt       i;
115463602bcaSStefano Zampini   PetscErrorCode ierr;
115563602bcaSStefano Zampini 
115663602bcaSStefano Zampini   PetscFunctionBegin;
115763602bcaSStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
115863602bcaSStefano Zampini   PetscValidLogicalCollectiveInt(pc,n_is,2);
115963602bcaSStefano Zampini   for (i=0;i<n_is;i++) {
116063602bcaSStefano Zampini     PetscCheckSameComm(pc,1,ISForDofs[i],3);
116163602bcaSStefano Zampini     PetscValidHeaderSpecific(ISForDofs[i],IS_CLASSID,3);
116263602bcaSStefano Zampini   }
1163e71e7a71SStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetDofsSplittingLocal_C",(PC,PetscInt,IS[]),(pc,n_is,ISForDofs));CHKERRQ(ierr);
116463602bcaSStefano Zampini   PetscFunctionReturn(0);
116563602bcaSStefano Zampini }
116663602bcaSStefano Zampini 
116763602bcaSStefano Zampini #undef __FUNCT__
11689c0446d6SStefano Zampini #define __FUNCT__ "PCBDDCSetDofsSplitting_BDDC"
11699c0446d6SStefano Zampini static PetscErrorCode PCBDDCSetDofsSplitting_BDDC(PC pc,PetscInt n_is, IS ISForDofs[])
11709c0446d6SStefano Zampini {
11719c0446d6SStefano Zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
11729c0446d6SStefano Zampini   PetscInt       i;
117356282151SStefano Zampini   PetscBool      isequal = PETSC_FALSE;
11749c0446d6SStefano Zampini   PetscErrorCode ierr;
11759c0446d6SStefano Zampini 
11769c0446d6SStefano Zampini   PetscFunctionBegin;
117756282151SStefano Zampini   if (pcbddc->n_ISForDofs == n_is) {
117856282151SStefano Zampini     for (i=0;i<n_is;i++) {
117956282151SStefano Zampini       PetscBool isequalt;
118056282151SStefano Zampini       ierr = ISEqual(ISForDofs[i],pcbddc->ISForDofs[i],&isequalt);CHKERRQ(ierr);
118156282151SStefano Zampini       if (!isequalt) break;
118256282151SStefano Zampini     }
118356282151SStefano Zampini     if (i == n_is) isequal = PETSC_TRUE;
118456282151SStefano Zampini   }
118556282151SStefano Zampini   for (i=0;i<n_is;i++) {
118656282151SStefano Zampini     ierr = PetscObjectReference((PetscObject)ISForDofs[i]);CHKERRQ(ierr);
118756282151SStefano Zampini   }
1188da1bb401SStefano Zampini   /* Destroy ISes if they were already set */
11899c0446d6SStefano Zampini   for (i=0;i<pcbddc->n_ISForDofs;i++) {
11909c0446d6SStefano Zampini     ierr = ISDestroy(&pcbddc->ISForDofs[i]);CHKERRQ(ierr);
11919c0446d6SStefano Zampini   }
1192d11ae9bbSstefano_zampini   ierr = PetscFree(pcbddc->ISForDofs);CHKERRQ(ierr);
119363602bcaSStefano Zampini   /* last user setting takes precendence -> destroy any other customization */
119463602bcaSStefano Zampini   for (i=0;i<pcbddc->n_ISForDofsLocal;i++) {
119563602bcaSStefano Zampini     ierr = ISDestroy(&pcbddc->ISForDofsLocal[i]);CHKERRQ(ierr);
119663602bcaSStefano Zampini   }
119763602bcaSStefano Zampini   ierr = PetscFree(pcbddc->ISForDofsLocal);CHKERRQ(ierr);
119863602bcaSStefano Zampini   pcbddc->n_ISForDofsLocal = 0;
1199da1bb401SStefano Zampini   /* allocate space then set */
1200d02579f5SStefano Zampini   if (n_is) {
1201785e854fSJed Brown     ierr = PetscMalloc1(n_is,&pcbddc->ISForDofs);CHKERRQ(ierr);
1202d02579f5SStefano Zampini   }
12039c0446d6SStefano Zampini   for (i=0;i<n_is;i++) {
1204da1bb401SStefano Zampini     pcbddc->ISForDofs[i] = ISForDofs[i];
12059c0446d6SStefano Zampini   }
12069c0446d6SStefano Zampini   pcbddc->n_ISForDofs = n_is;
120763602bcaSStefano Zampini   if (n_is) pcbddc->user_provided_isfordofs = PETSC_TRUE;
120856282151SStefano Zampini   if (!isequal) pcbddc->recompute_topography = PETSC_TRUE;
12099c0446d6SStefano Zampini   PetscFunctionReturn(0);
12109c0446d6SStefano Zampini }
12111e6b0712SBarry Smith 
12129c0446d6SStefano Zampini #undef __FUNCT__
12139c0446d6SStefano Zampini #define __FUNCT__ "PCBDDCSetDofsSplitting"
12149c0446d6SStefano Zampini /*@
121563602bcaSStefano Zampini  PCBDDCSetDofsSplitting - Set index sets defining fields of the global matrix
12169c0446d6SStefano Zampini 
121763602bcaSStefano Zampini    Collective
12189c0446d6SStefano Zampini 
12199c0446d6SStefano Zampini    Input Parameters:
12209c0446d6SStefano Zampini +  pc - the preconditioning context
12210f202f7eSStefano Zampini .  n_is - number of index sets defining the fields
12220f202f7eSStefano Zampini -  ISForDofs - array of IS describing the fields in global ordering
12239c0446d6SStefano Zampini 
12249c0446d6SStefano Zampini    Level: intermediate
12259c0446d6SStefano Zampini 
12260f202f7eSStefano Zampini    Notes:
12270f202f7eSStefano Zampini      Any process can list any global node. Not all nodes need to be listed: unlisted nodes will belong to the complement field.
12289c0446d6SStefano Zampini 
12299c0446d6SStefano Zampini .seealso: PCBDDC
12309c0446d6SStefano Zampini @*/
12319c0446d6SStefano Zampini PetscErrorCode PCBDDCSetDofsSplitting(PC pc,PetscInt n_is, IS ISForDofs[])
12329c0446d6SStefano Zampini {
12332b510759SStefano Zampini   PetscInt       i;
12349c0446d6SStefano Zampini   PetscErrorCode ierr;
12359c0446d6SStefano Zampini 
12369c0446d6SStefano Zampini   PetscFunctionBegin;
12379c0446d6SStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
123863602bcaSStefano Zampini   PetscValidLogicalCollectiveInt(pc,n_is,2);
12392b510759SStefano Zampini   for (i=0;i<n_is;i++) {
124063602bcaSStefano Zampini     PetscCheckSameComm(pc,1,ISForDofs[i],3);
124163602bcaSStefano Zampini     PetscValidHeaderSpecific(ISForDofs[i],IS_CLASSID,3);
12422b510759SStefano Zampini   }
12439c0446d6SStefano Zampini   ierr = PetscTryMethod(pc,"PCBDDCSetDofsSplitting_C",(PC,PetscInt,IS[]),(pc,n_is,ISForDofs));CHKERRQ(ierr);
12449c0446d6SStefano Zampini   PetscFunctionReturn(0);
12459c0446d6SStefano Zampini }
1246906d46d4SStefano Zampini 
1247534831adSStefano Zampini #undef __FUNCT__
1248534831adSStefano Zampini #define __FUNCT__ "PCPreSolve_BDDC"
1249534831adSStefano Zampini /*
1250534831adSStefano Zampini    PCPreSolve_BDDC - Changes the right hand side and (if necessary) the initial
1251534831adSStefano Zampini                      guess if a transformation of basis approach has been selected.
12529c0446d6SStefano Zampini 
1253534831adSStefano Zampini    Input Parameter:
1254534831adSStefano Zampini +  pc - the preconditioner contex
1255534831adSStefano Zampini 
1256534831adSStefano Zampini    Application Interface Routine: PCPreSolve()
1257534831adSStefano Zampini 
1258534831adSStefano Zampini    Notes:
1259534831adSStefano Zampini      The interface routine PCPreSolve() is not usually called directly by
1260534831adSStefano Zampini    the user, but instead is called by KSPSolve().
1261534831adSStefano Zampini */
1262534831adSStefano Zampini static PetscErrorCode PCPreSolve_BDDC(PC pc, KSP ksp, Vec rhs, Vec x)
1263534831adSStefano Zampini {
1264534831adSStefano Zampini   PetscErrorCode ierr;
1265534831adSStefano Zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
1266534831adSStefano Zampini   PC_IS          *pcis = (PC_IS*)(pc->data);
12673972b0daSStefano Zampini   Vec            used_vec;
126827b6a85dSStefano Zampini   PetscBool      save_rhs = PETSC_TRUE, benign_correction_computed;
1269534831adSStefano Zampini 
1270534831adSStefano Zampini   PetscFunctionBegin;
12711f4df5f7SStefano Zampini   /* if we are working with CG, one dirichlet solve can be avoided during Krylov iterations */
127285c4d303SStefano Zampini   if (ksp) {
12731f4df5f7SStefano Zampini     PetscBool iscg, isgroppcg, ispipecg, ispipecgrr;
127485c4d303SStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)ksp,KSPCG,&iscg);CHKERRQ(ierr);
127527b6a85dSStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)ksp,KSPGROPPCG,&isgroppcg);CHKERRQ(ierr);
127627b6a85dSStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)ksp,KSPPIPECG,&ispipecg);CHKERRQ(ierr);
1277f94e96cbSStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)ksp,KSPPIPECGRR,&ispipecgrr);CHKERRQ(ierr);
12781f4df5f7SStefano Zampini     if (pcbddc->benign_apply_coarse_only || pcbddc->switch_static || (!iscg && !isgroppcg && !ispipecg && !ispipecgrr)) {
127985c4d303SStefano Zampini       ierr = PCBDDCSetUseExactDirichlet(pc,PETSC_FALSE);CHKERRQ(ierr);
128085c4d303SStefano Zampini     }
128185c4d303SStefano Zampini   }
1282fc17d649SStefano Zampini   if (pcbddc->benign_apply_coarse_only || pcbddc->switch_static) {
1283fc17d649SStefano Zampini     ierr = PCBDDCSetUseExactDirichlet(pc,PETSC_FALSE);CHKERRQ(ierr);
1284fc17d649SStefano Zampini   }
12851f4df5f7SStefano Zampini 
128685c4d303SStefano Zampini   /* Creates parallel work vectors used in presolve */
128762a6ff1dSStefano Zampini   if (!pcbddc->original_rhs) {
128862a6ff1dSStefano Zampini     ierr = VecDuplicate(pcis->vec1_global,&pcbddc->original_rhs);CHKERRQ(ierr);
128962a6ff1dSStefano Zampini   }
129062a6ff1dSStefano Zampini   if (!pcbddc->temp_solution) {
129162a6ff1dSStefano Zampini     ierr = VecDuplicate(pcis->vec1_global,&pcbddc->temp_solution);CHKERRQ(ierr);
129262a6ff1dSStefano Zampini   }
12938d00608fSStefano Zampini 
129427b6a85dSStefano Zampini   pcbddc->temp_solution_used = PETSC_FALSE;
12953972b0daSStefano Zampini   if (x) {
12963972b0daSStefano Zampini     ierr = PetscObjectReference((PetscObject)x);CHKERRQ(ierr);
12973972b0daSStefano Zampini     used_vec = x;
12988d00608fSStefano Zampini   } else { /* it can only happen when calling PCBDDCMatFETIDPGetRHS */
12993972b0daSStefano Zampini     ierr = PetscObjectReference((PetscObject)pcbddc->temp_solution);CHKERRQ(ierr);
13003972b0daSStefano Zampini     used_vec = pcbddc->temp_solution;
13013972b0daSStefano Zampini     ierr = VecSet(used_vec,0.0);CHKERRQ(ierr);
130227b6a85dSStefano Zampini     pcbddc->temp_solution_used = PETSC_TRUE;
1303266e20e9SStefano Zampini     ierr = VecCopy(rhs,pcbddc->original_rhs);CHKERRQ(ierr);
1304266e20e9SStefano Zampini     save_rhs = PETSC_FALSE;
1305266e20e9SStefano Zampini     pcbddc->eliminate_dirdofs = PETSC_TRUE;
13063972b0daSStefano Zampini   }
13078efcfb23SStefano Zampini 
13088efcfb23SStefano Zampini   /* hack into ksp data structure since PCPreSolve comes earlier than setting to zero the guess in src/ksp/ksp/interface/itfunc.c */
13093972b0daSStefano Zampini   if (ksp) {
1310a0cb1b98SStefano Zampini     /* store the flag for the initial guess since it will be restored back during PCPostSolve_BDDC */
13118efcfb23SStefano Zampini     ierr = KSPGetInitialGuessNonzero(ksp,&pcbddc->ksp_guess_nonzero);CHKERRQ(ierr);
13128efcfb23SStefano Zampini     if (!pcbddc->ksp_guess_nonzero) {
13133972b0daSStefano Zampini       ierr = VecSet(used_vec,0.0);CHKERRQ(ierr);
13143972b0daSStefano Zampini     }
13153972b0daSStefano Zampini   }
13163308cffdSStefano Zampini 
13178d00608fSStefano Zampini   pcbddc->rhs_change = PETSC_FALSE;
13183972b0daSStefano Zampini   /* Take into account zeroed rows -> change rhs and store solution removed */
131970c64980SStefano Zampini   if (rhs && pcbddc->eliminate_dirdofs) {
13203975b054SStefano Zampini     IS dirIS = NULL;
13213975b054SStefano Zampini 
1322a07ea27aSStefano Zampini     /* DirichletBoundariesLocal may not be consistent among neighbours; gets a dirichlet dofs IS from graph (may be cached) */
13233975b054SStefano Zampini     ierr = PCBDDCGraphGetDirichletDofs(pcbddc->mat_graph,&dirIS);CHKERRQ(ierr);
13243975b054SStefano Zampini     if (dirIS) {
1325906d46d4SStefano Zampini       Mat_IS            *matis = (Mat_IS*)pc->pmat->data;
1326785d1243SStefano Zampini       PetscInt          dirsize,i,*is_indices;
13272b095fd8SStefano Zampini       PetscScalar       *array_x;
13282b095fd8SStefano Zampini       const PetscScalar *array_diagonal;
1329785d1243SStefano Zampini 
13303972b0daSStefano Zampini       ierr = MatGetDiagonal(pc->pmat,pcis->vec1_global);CHKERRQ(ierr);
13313972b0daSStefano Zampini       ierr = VecPointwiseDivide(pcis->vec1_global,rhs,pcis->vec1_global);CHKERRQ(ierr);
1332e176bc59SStefano Zampini       ierr = VecScatterBegin(matis->rctx,pcis->vec1_global,pcis->vec2_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1333e176bc59SStefano Zampini       ierr = VecScatterEnd(matis->rctx,pcis->vec1_global,pcis->vec2_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1334e176bc59SStefano Zampini       ierr = VecScatterBegin(matis->rctx,used_vec,pcis->vec1_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1335e176bc59SStefano Zampini       ierr = VecScatterEnd(matis->rctx,used_vec,pcis->vec1_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
133682ba6b80SStefano Zampini       ierr = ISGetLocalSize(dirIS,&dirsize);CHKERRQ(ierr);
13373972b0daSStefano Zampini       ierr = VecGetArray(pcis->vec1_N,&array_x);CHKERRQ(ierr);
13382b095fd8SStefano Zampini       ierr = VecGetArrayRead(pcis->vec2_N,&array_diagonal);CHKERRQ(ierr);
13393972b0daSStefano Zampini       ierr = ISGetIndices(dirIS,(const PetscInt**)&is_indices);CHKERRQ(ierr);
13402fa5cd67SKarl Rupp       for (i=0; i<dirsize; i++) array_x[is_indices[i]] = array_diagonal[is_indices[i]];
13413972b0daSStefano Zampini       ierr = ISRestoreIndices(dirIS,(const PetscInt**)&is_indices);CHKERRQ(ierr);
13422b095fd8SStefano Zampini       ierr = VecRestoreArrayRead(pcis->vec2_N,&array_diagonal);CHKERRQ(ierr);
13433972b0daSStefano Zampini       ierr = VecRestoreArray(pcis->vec1_N,&array_x);CHKERRQ(ierr);
1344e176bc59SStefano Zampini       ierr = VecScatterBegin(matis->rctx,pcis->vec1_N,used_vec,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1345e176bc59SStefano Zampini       ierr = VecScatterEnd(matis->rctx,pcis->vec1_N,used_vec,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
13468d00608fSStefano Zampini       pcbddc->rhs_change = PETSC_TRUE;
13471b968477SStefano Zampini       ierr = ISDestroy(&dirIS);CHKERRQ(ierr);
13488efcfb23SStefano Zampini     }
1349a07ea27aSStefano Zampini   }
1350b76ba322SStefano Zampini 
13518efcfb23SStefano Zampini   /* remove the computed solution or the initial guess from the rhs */
13528d00608fSStefano Zampini   if (pcbddc->rhs_change || (ksp && pcbddc->ksp_guess_nonzero) ) {
135327b6a85dSStefano Zampini     /* save the original rhs */
135427b6a85dSStefano Zampini     if (save_rhs) {
135527b6a85dSStefano Zampini       ierr = VecSwap(rhs,pcbddc->original_rhs);CHKERRQ(ierr);
135627b6a85dSStefano Zampini       save_rhs = PETSC_FALSE;
13578d00608fSStefano Zampini     }
13588d00608fSStefano Zampini     pcbddc->rhs_change = PETSC_TRUE;
13593972b0daSStefano Zampini     ierr = VecScale(used_vec,-1.0);CHKERRQ(ierr);
136027b6a85dSStefano Zampini     ierr = MatMultAdd(pc->mat,used_vec,pcbddc->original_rhs,rhs);CHKERRQ(ierr);
13613972b0daSStefano Zampini     ierr = VecScale(used_vec,-1.0);CHKERRQ(ierr);
13628efcfb23SStefano Zampini     ierr = VecCopy(used_vec,pcbddc->temp_solution);CHKERRQ(ierr);
136327b6a85dSStefano Zampini     pcbddc->temp_solution_used = PETSC_TRUE;
13647acc28cbSStefano Zampini     if (ksp) {
13657acc28cbSStefano Zampini       ierr = KSPSetInitialGuessNonzero(ksp,PETSC_FALSE);CHKERRQ(ierr);
13667acc28cbSStefano Zampini     }
13673308cffdSStefano Zampini   }
13688efcfb23SStefano Zampini   ierr = VecDestroy(&used_vec);CHKERRQ(ierr);
1369b76ba322SStefano Zampini 
1370fc17d649SStefano Zampini   /* compute initial vector in benign space if needed
137127b6a85dSStefano Zampini      and remove non-benign solution from the rhs */
137227b6a85dSStefano Zampini   benign_correction_computed = PETSC_FALSE;
137327b6a85dSStefano Zampini   if (rhs && pcbddc->benign_compute_correction && pcbddc->benign_have_null) {
13741f4df5f7SStefano Zampini     /* compute u^*_h using ideas similar to those in Xuemin Tu's PhD thesis (see Section 4.8.1)
13751f4df5f7SStefano Zampini        Recursively apply BDDC in the multilevel case */
13760369aaf7SStefano Zampini     if (!pcbddc->benign_vec) {
13770369aaf7SStefano Zampini       ierr = VecDuplicate(rhs,&pcbddc->benign_vec);CHKERRQ(ierr);
13780369aaf7SStefano Zampini     }
13794fee134fSStefano Zampini     pcbddc->benign_apply_coarse_only = PETSC_TRUE;
138027b6a85dSStefano Zampini     if (!pcbddc->benign_skip_correction) {
13811dd7afcfSStefano Zampini       ierr = PCApply_BDDC(pc,rhs,pcbddc->benign_vec);CHKERRQ(ierr);
13823bca92a6SStefano Zampini       benign_correction_computed = PETSC_TRUE;
13831f4df5f7SStefano Zampini       if (pcbddc->temp_solution_used) {
13841f4df5f7SStefano Zampini         ierr = VecAXPY(pcbddc->temp_solution,1.0,pcbddc->benign_vec);CHKERRQ(ierr);
13851f4df5f7SStefano Zampini       }
13861f4df5f7SStefano Zampini       ierr = VecScale(pcbddc->benign_vec,-1.0);CHKERRQ(ierr);
138727b6a85dSStefano Zampini       /* store the original rhs if not done earlier */
138827b6a85dSStefano Zampini       if (save_rhs) {
138927b6a85dSStefano Zampini         ierr = VecSwap(rhs,pcbddc->original_rhs);CHKERRQ(ierr);
139092e3dcfbSStefano Zampini       }
139127b6a85dSStefano Zampini       if (pcbddc->rhs_change) {
13920369aaf7SStefano Zampini         ierr = MatMultAdd(pc->mat,pcbddc->benign_vec,rhs,rhs);CHKERRQ(ierr);
139327b6a85dSStefano Zampini       } else {
139427b6a85dSStefano Zampini         ierr = MatMultAdd(pc->mat,pcbddc->benign_vec,pcbddc->original_rhs,rhs);CHKERRQ(ierr);
139527b6a85dSStefano Zampini       }
13960369aaf7SStefano Zampini       pcbddc->rhs_change = PETSC_TRUE;
139727b6a85dSStefano Zampini     }
139827b6a85dSStefano Zampini     pcbddc->benign_apply_coarse_only = PETSC_FALSE;
13990369aaf7SStefano Zampini   }
14002d4c4fecSStefano Zampini 
14012d4c4fecSStefano Zampini   /* dbg output */
1402a198735bSStefano Zampini   if (pcbddc->dbg_flag && benign_correction_computed) {
14031f4df5f7SStefano Zampini     Vec v;
14041f4df5f7SStefano Zampini     ierr = VecDuplicate(pcis->vec1_global,&v);CHKERRQ(ierr);
14051f4df5f7SStefano Zampini     ierr = MatMultTranspose(pcbddc->ChangeOfBasisMatrix,rhs,v);CHKERRQ(ierr);
14061f4df5f7SStefano Zampini     ierr = PCBDDCBenignGetOrSetP0(pc,v,PETSC_TRUE);CHKERRQ(ierr);
1407a198735bSStefano Zampini     ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"LEVEL %d: is the correction benign?\n",pcbddc->current_level);CHKERRQ(ierr);
14082d4c4fecSStefano Zampini     ierr = PetscScalarView(pcbddc->benign_n,pcbddc->benign_p0,PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)pc)));CHKERRQ(ierr);
14091f4df5f7SStefano Zampini     ierr = VecDestroy(&v);CHKERRQ(ierr);
14101f4df5f7SStefano Zampini   }
14110369aaf7SStefano Zampini 
14120369aaf7SStefano Zampini   /* set initial guess if using PCG */
14138ae0ca82SStefano Zampini   pcbddc->exact_dirichlet_trick_app = PETSC_FALSE;
14140369aaf7SStefano Zampini   if (x && pcbddc->use_exact_dirichlet_trick) {
14150369aaf7SStefano Zampini     ierr = VecSet(x,0.0);CHKERRQ(ierr);
14161dd7afcfSStefano Zampini     if (pcbddc->ChangeOfBasisMatrix && pcbddc->change_interior) {
141727b6a85dSStefano Zampini       if (benign_correction_computed) { /* we have already saved the changed rhs */
14181dd7afcfSStefano Zampini         ierr = VecLockPop(pcis->vec1_global);CHKERRQ(ierr);
14191dd7afcfSStefano Zampini       } else {
14201dd7afcfSStefano Zampini         ierr = MatMultTranspose(pcbddc->ChangeOfBasisMatrix,rhs,pcis->vec1_global);CHKERRQ(ierr);
14211dd7afcfSStefano Zampini       }
14221dd7afcfSStefano Zampini       ierr = VecScatterBegin(pcis->global_to_D,pcis->vec1_global,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
14231dd7afcfSStefano Zampini       ierr = VecScatterEnd(pcis->global_to_D,pcis->vec1_global,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
14241dd7afcfSStefano Zampini     } else {
14250369aaf7SStefano Zampini       ierr = VecScatterBegin(pcis->global_to_D,rhs,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
14260369aaf7SStefano Zampini       ierr = VecScatterEnd(pcis->global_to_D,rhs,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
14271dd7afcfSStefano Zampini     }
14280369aaf7SStefano Zampini     ierr = KSPSolve(pcbddc->ksp_D,pcis->vec1_D,pcis->vec2_D);CHKERRQ(ierr);
14291dd7afcfSStefano Zampini     if (pcbddc->ChangeOfBasisMatrix && pcbddc->change_interior) {
14301dd7afcfSStefano Zampini       ierr = VecSet(pcis->vec1_global,0.);CHKERRQ(ierr);
14311dd7afcfSStefano Zampini       ierr = VecScatterBegin(pcis->global_to_D,pcis->vec2_D,pcis->vec1_global,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
14321dd7afcfSStefano Zampini       ierr = VecScatterEnd(pcis->global_to_D,pcis->vec2_D,pcis->vec1_global,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
14331dd7afcfSStefano Zampini       ierr = MatMult(pcbddc->ChangeOfBasisMatrix,pcis->vec1_global,x);CHKERRQ(ierr);
14341dd7afcfSStefano Zampini     } else {
14350369aaf7SStefano Zampini       ierr = VecScatterBegin(pcis->global_to_D,pcis->vec2_D,x,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
14360369aaf7SStefano Zampini       ierr = VecScatterEnd(pcis->global_to_D,pcis->vec2_D,x,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
14371dd7afcfSStefano Zampini     }
14380369aaf7SStefano Zampini     if (ksp) {
14390369aaf7SStefano Zampini       ierr = KSPSetInitialGuessNonzero(ksp,PETSC_TRUE);CHKERRQ(ierr);
14400369aaf7SStefano Zampini     }
14418ae0ca82SStefano Zampini     pcbddc->exact_dirichlet_trick_app = PETSC_TRUE;
1442266e20e9SStefano Zampini   } else if (pcbddc->ChangeOfBasisMatrix && pcbddc->change_interior && benign_correction_computed && pcbddc->use_exact_dirichlet_trick) {
1443266e20e9SStefano Zampini     ierr = VecLockPop(pcis->vec1_global);CHKERRQ(ierr);
14440369aaf7SStefano Zampini   }
1445534831adSStefano Zampini   PetscFunctionReturn(0);
1446534831adSStefano Zampini }
1447906d46d4SStefano Zampini 
1448534831adSStefano Zampini #undef __FUNCT__
1449534831adSStefano Zampini #define __FUNCT__ "PCPostSolve_BDDC"
1450534831adSStefano Zampini /*
1451534831adSStefano Zampini    PCPostSolve_BDDC - Changes the computed solution if a transformation of basis
1452534831adSStefano Zampini                      approach has been selected. Also, restores rhs to its original state.
1453534831adSStefano Zampini 
1454534831adSStefano Zampini    Input Parameter:
1455534831adSStefano Zampini +  pc - the preconditioner contex
1456534831adSStefano Zampini 
1457534831adSStefano Zampini    Application Interface Routine: PCPostSolve()
1458534831adSStefano Zampini 
1459534831adSStefano Zampini    Notes:
1460534831adSStefano Zampini      The interface routine PCPostSolve() is not usually called directly by
1461534831adSStefano Zampini      the user, but instead is called by KSPSolve().
1462534831adSStefano Zampini */
1463534831adSStefano Zampini static PetscErrorCode PCPostSolve_BDDC(PC pc, KSP ksp, Vec rhs, Vec x)
1464534831adSStefano Zampini {
1465534831adSStefano Zampini   PetscErrorCode ierr;
1466534831adSStefano Zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
1467534831adSStefano Zampini 
1468534831adSStefano Zampini   PetscFunctionBegin;
14693972b0daSStefano Zampini   /* add solution removed in presolve */
14706bcfc461SStefano Zampini   if (x && pcbddc->rhs_change) {
147127b6a85dSStefano Zampini     if (pcbddc->temp_solution_used) {
14723425bc38SStefano Zampini       ierr = VecAXPY(x,1.0,pcbddc->temp_solution);CHKERRQ(ierr);
147327b6a85dSStefano Zampini     } else if (pcbddc->benign_compute_correction) {
147427b6a85dSStefano Zampini       ierr = VecAXPY(x,-1.0,pcbddc->benign_vec);CHKERRQ(ierr);
14753425bc38SStefano Zampini     }
147627b6a85dSStefano Zampini   }
147727b6a85dSStefano Zampini   pcbddc->temp_solution_used = PETSC_FALSE;
147827b6a85dSStefano Zampini 
1479266e20e9SStefano Zampini   /* restore rhs to its original state (not needed for FETI-DP) */
14808d00608fSStefano Zampini   if (rhs && pcbddc->rhs_change) {
148127b6a85dSStefano Zampini     ierr = VecSwap(rhs,pcbddc->original_rhs);CHKERRQ(ierr);
1482fb223d50SStefano Zampini   }
14838d00608fSStefano Zampini   pcbddc->rhs_change = PETSC_FALSE;
14848efcfb23SStefano Zampini   /* restore ksp guess state */
14858efcfb23SStefano Zampini   if (ksp) {
14868efcfb23SStefano Zampini     ierr = KSPSetInitialGuessNonzero(ksp,pcbddc->ksp_guess_nonzero);CHKERRQ(ierr);
14878efcfb23SStefano Zampini   }
14888ae0ca82SStefano Zampini   /* reset flag for exact dirichlet trick */
14898ae0ca82SStefano Zampini   pcbddc->exact_dirichlet_trick_app = PETSC_FALSE;
1490534831adSStefano Zampini   PetscFunctionReturn(0);
1491534831adSStefano Zampini }
149253cdbc3dSStefano Zampini #undef __FUNCT__
149353cdbc3dSStefano Zampini #define __FUNCT__ "PCSetUp_BDDC"
14940c7d97c5SJed Brown /*
14950c7d97c5SJed Brown    PCSetUp_BDDC - Prepares for the use of the BDDC preconditioner
14960c7d97c5SJed Brown                   by setting data structures and options.
14970c7d97c5SJed Brown 
14980c7d97c5SJed Brown    Input Parameter:
149953cdbc3dSStefano Zampini +  pc - the preconditioner context
15000c7d97c5SJed Brown 
15010c7d97c5SJed Brown    Application Interface Routine: PCSetUp()
15020c7d97c5SJed Brown 
15030c7d97c5SJed Brown    Notes:
15040c7d97c5SJed Brown      The interface routine PCSetUp() is not usually called directly by
15050c7d97c5SJed Brown      the user, but instead is called by PCApply() if necessary.
15060c7d97c5SJed Brown */
150753cdbc3dSStefano Zampini PetscErrorCode PCSetUp_BDDC(PC pc)
15080c7d97c5SJed Brown {
15090c7d97c5SJed Brown   PC_BDDC*        pcbddc = (PC_BDDC*)pc->data;
1510c703fcc7SStefano Zampini   PCBDDCSubSchurs sub_schurs;
15115e8657edSStefano Zampini   Mat_IS*         matis;
151208122e43SStefano Zampini   MatNullSpace    nearnullspace;
1513c9ed8603SStefano Zampini   IS              zerodiag = NULL;
151491e8d312SStefano Zampini   PetscInt        nrows,ncols;
1515c703fcc7SStefano Zampini   PetscBool       computesubschurs;
15168de1fae6SStefano Zampini   PetscBool       computeconstraintsmatrix;
15175e8657edSStefano Zampini   PetscBool       new_nearnullspace_provided,ismatis;
1518c703fcc7SStefano Zampini   PetscErrorCode  ierr;
15190c7d97c5SJed Brown 
15200c7d97c5SJed Brown   PetscFunctionBegin;
15215e8657edSStefano Zampini   ierr = PetscObjectTypeCompare((PetscObject)pc->pmat,MATIS,&ismatis);CHKERRQ(ierr);
15226c4ed002SBarry Smith   if (!ismatis) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_ARG_WRONG,"PCBDDC preconditioner requires matrix of type MATIS");
152391e8d312SStefano Zampini   ierr = MatGetSize(pc->pmat,&nrows,&ncols);CHKERRQ(ierr);
15246c4ed002SBarry Smith   if (nrows != ncols) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"PCBDDC preconditioner requires a square preconditioning matrix");
15255e8657edSStefano Zampini   matis = (Mat_IS*)pc->pmat->data;
1526f4ddd8eeSStefano Zampini   /* the following lines of code should be replaced by a better logic between PCIS, PCNN, PCBDDC and other future nonoverlapping preconditioners */
15273b03a366Sstefano_zampini   /* For BDDC we need to define a local "Neumann" problem different to that defined in PCISSetup
152871582508SStefano Zampini      Also, BDDC builds its own KSP for the Dirichlet problem */
1529c703fcc7SStefano Zampini   if (pc->setupcalled && pc->flag != SAME_NONZERO_PATTERN) pcbddc->recompute_topography = PETSC_TRUE;
1530c83e1ba7SStefano Zampini   if (pcbddc->recompute_topography) {
1531c83e1ba7SStefano Zampini     pcbddc->graphanalyzed    = PETSC_FALSE;
1532c83e1ba7SStefano Zampini     computeconstraintsmatrix = PETSC_TRUE;
1533c83e1ba7SStefano Zampini   } else {
15348de1fae6SStefano Zampini     computeconstraintsmatrix = PETSC_FALSE;
1535c83e1ba7SStefano Zampini   }
1536b087196eSStefano Zampini 
1537b087196eSStefano Zampini   /* check parameters' compatibility */
1538b7ab4a40SStefano Zampini   if (!pcbddc->use_deluxe_scaling) pcbddc->deluxe_zerorows = PETSC_FALSE;
15399d54b7f4SStefano Zampini   pcbddc->adaptive_selection = (PetscBool)(pcbddc->adaptive_threshold > 0.0);
1540bf3a8328SStefano Zampini   pcbddc->adaptive_userdefined = (PetscBool)(pcbddc->adaptive_selection && pcbddc->adaptive_userdefined);
1541862806e4SStefano Zampini   if (pcbddc->adaptive_selection) pcbddc->use_faces = PETSC_TRUE;
1542862806e4SStefano Zampini 
15435a95e1ceSStefano Zampini   computesubschurs = (PetscBool)(pcbddc->adaptive_selection || pcbddc->use_deluxe_scaling);
154416909a7fSStefano Zampini   if (pcbddc->switch_static) {
154516909a7fSStefano Zampini     PetscBool ismatis;
154616909a7fSStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)pc->mat,MATIS,&ismatis);CHKERRQ(ierr);
154716909a7fSStefano Zampini     if (!ismatis) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"When the static switch is one, the iteration matrix should be of type MATIS");
154816909a7fSStefano Zampini   }
154916909a7fSStefano Zampini 
155071582508SStefano Zampini   /* activate all connected components if the netflux has been requested */
1551bb05f991SStefano Zampini   if (pcbddc->compute_nonetflux) {
1552bb05f991SStefano Zampini     pcbddc->use_vertices = PETSC_TRUE;
1553bb05f991SStefano Zampini     pcbddc->use_edges = PETSC_TRUE;
1554bb05f991SStefano Zampini     pcbddc->use_faces = PETSC_TRUE;
1555bb05f991SStefano Zampini   }
1556bb05f991SStefano Zampini 
1557f4ddd8eeSStefano Zampini   /* Get stdout for dbg */
155870cf5478SStefano Zampini   if (pcbddc->dbg_flag) {
155970cf5478SStefano Zampini     if (!pcbddc->dbg_viewer) {
156058a03d70SStefano Zampini       pcbddc->dbg_viewer = PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)pc));
15611575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(pcbddc->dbg_viewer);CHKERRQ(ierr);
1562f4ddd8eeSStefano Zampini     }
156358a03d70SStefano Zampini     ierr = PetscViewerASCIIAddTab(pcbddc->dbg_viewer,2*pcbddc->current_level);CHKERRQ(ierr);
1564f4ddd8eeSStefano Zampini   }
1565f4ddd8eeSStefano Zampini 
1566c703fcc7SStefano Zampini   /* process topology information */
156771582508SStefano Zampini   if (pcbddc->recompute_topography) {
156871582508SStefano Zampini     ierr = PCBDDCComputeLocalTopologyInfo(pc);CHKERRQ(ierr);
1569c83e1ba7SStefano Zampini     /* detect local disconnected subdomains if requested (use matis->A) */
1570c83e1ba7SStefano Zampini     if (pcbddc->detect_disconnected) {
1571c83e1ba7SStefano Zampini       PetscInt i;
1572c83e1ba7SStefano Zampini       for (i=0;i<pcbddc->n_local_subs;i++) {
1573c83e1ba7SStefano Zampini         ierr = ISDestroy(&pcbddc->local_subs[i]);CHKERRQ(ierr);
1574c83e1ba7SStefano Zampini       }
1575c83e1ba7SStefano Zampini       ierr = PetscFree(pcbddc->local_subs);CHKERRQ(ierr);
1576c83e1ba7SStefano Zampini       ierr = MatDetectDisconnectedComponents(matis->A,PETSC_FALSE,&pcbddc->n_local_subs,&pcbddc->local_subs);CHKERRQ(ierr);
1577c83e1ba7SStefano Zampini     }
1578c703fcc7SStefano Zampini     if (pcbddc->discretegradient) {
1579a13144ffSStefano Zampini       ierr = PCBDDCNedelecSupport(pc);CHKERRQ(ierr);
1580a13144ffSStefano Zampini     }
1581c703fcc7SStefano Zampini   }
1582a13144ffSStefano Zampini 
1583c703fcc7SStefano Zampini   /* change basis if requested by the user */
15845e8657edSStefano Zampini   if (pcbddc->user_ChangeOfBasisMatrix) {
15855e8657edSStefano Zampini     /* use_change_of_basis flag is used to automatically compute a change of basis from constraints */
15865e8657edSStefano Zampini     pcbddc->use_change_of_basis = PETSC_FALSE;
15875e8657edSStefano Zampini     ierr = PCBDDCComputeLocalMatrix(pc,pcbddc->user_ChangeOfBasisMatrix);CHKERRQ(ierr);
15885e8657edSStefano Zampini   } else {
1589b96c3477SStefano Zampini     ierr = MatDestroy(&pcbddc->local_mat);CHKERRQ(ierr);
15905e8657edSStefano Zampini     ierr = PetscObjectReference((PetscObject)matis->A);CHKERRQ(ierr);
15915e8657edSStefano Zampini     pcbddc->local_mat = matis->A;
1592d16cbb6bSStefano Zampini   }
1593d16cbb6bSStefano Zampini 
15944f1b2e48SStefano Zampini   /*
1595c703fcc7SStefano Zampini      Compute change of basis on local pressures (aka zerodiag dofs) with the benign trick
15964f1b2e48SStefano Zampini      This should come earlier then PCISSetUp for extracting the correct subdomain matrices
15974f1b2e48SStefano Zampini   */
15981dd7afcfSStefano Zampini   ierr = PCBDDCBenignShellMat(pc,PETSC_TRUE);CHKERRQ(ierr);
1599d16cbb6bSStefano Zampini   if (pcbddc->benign_saddle_point) {
16009f47a83aSStefano Zampini     PC_IS* pcis = (PC_IS*)pc->data;
16019f47a83aSStefano Zampini 
160205b28244SStefano Zampini     if (pcbddc->user_ChangeOfBasisMatrix || pcbddc->use_change_of_basis || !computesubschurs) pcbddc->benign_change_explicit = PETSC_TRUE;
1603669cc0f4SStefano Zampini     /* detect local saddle point and change the basis in pcbddc->local_mat (TODO: reuse case) */
1604339f8db1SStefano Zampini     ierr = PCBDDCBenignDetectSaddlePoint(pc,&zerodiag);CHKERRQ(ierr);
1605a3df083aSStefano Zampini     /* pop B0 mat from local mat */
1606c263805aSStefano Zampini     ierr = PCBDDCBenignPopOrPushB0(pc,PETSC_TRUE);CHKERRQ(ierr);
16071dd7afcfSStefano Zampini     /* give pcis a hint to not reuse submatrices during PCISCreate */
16081dd7afcfSStefano Zampini     if (pc->flag == SAME_NONZERO_PATTERN && pcis->reusesubmatrices == PETSC_TRUE) {
16091dd7afcfSStefano Zampini       if (pcbddc->benign_n && (pcbddc->benign_change_explicit || pcbddc->dbg_flag)) {
16101dd7afcfSStefano Zampini         pcis->reusesubmatrices = PETSC_FALSE;
16111dd7afcfSStefano Zampini       } else {
1612a3df083aSStefano Zampini         pcis->reusesubmatrices = PETSC_TRUE;
16131dd7afcfSStefano Zampini       }
1614a3df083aSStefano Zampini     } else {
16159f47a83aSStefano Zampini       pcis->reusesubmatrices = PETSC_FALSE;
1616674ae819SStefano Zampini     }
1617a3df083aSStefano Zampini   }
161827b6a85dSStefano Zampini 
1619c703fcc7SStefano Zampini   /* propagate relevant information -> TODO remove*/
16204f1b2e48SStefano Zampini #if !defined(PETSC_USE_COMPLEX) /* workaround for reals */
16213301b35fSStefano Zampini   if (matis->A->symmetric_set) {
16223301b35fSStefano Zampini     ierr = MatSetOption(pcbddc->local_mat,MAT_HERMITIAN,matis->A->symmetric);CHKERRQ(ierr);
16233301b35fSStefano Zampini   }
1624e496cd5dSStefano Zampini #endif
162506a4e24aSStefano Zampini   if (matis->A->symmetric_set) {
162606a4e24aSStefano Zampini     ierr = MatSetOption(pcbddc->local_mat,MAT_SYMMETRIC,matis->A->symmetric);CHKERRQ(ierr);
162706a4e24aSStefano Zampini   }
162806a4e24aSStefano Zampini   if (matis->A->spd_set) {
162906a4e24aSStefano Zampini     ierr = MatSetOption(pcbddc->local_mat,MAT_SPD,matis->A->spd);CHKERRQ(ierr);
163006a4e24aSStefano Zampini   }
1631e496cd5dSStefano Zampini 
16325e8657edSStefano Zampini   /* Set up all the "iterative substructuring" common block without computing solvers */
16335e8657edSStefano Zampini   {
16345e8657edSStefano Zampini     Mat temp_mat;
16355e8657edSStefano Zampini 
16365e8657edSStefano Zampini     temp_mat = matis->A;
16375e8657edSStefano Zampini     matis->A = pcbddc->local_mat;
16385e8657edSStefano Zampini     ierr = PCISSetUp(pc,PETSC_FALSE);CHKERRQ(ierr);
16395e8657edSStefano Zampini     pcbddc->local_mat = matis->A;
16405e8657edSStefano Zampini     matis->A = temp_mat;
16415e8657edSStefano Zampini   }
1642684f6988SStefano Zampini 
164381d14e9dSStefano Zampini   /* Analyze interface */
164464ac59b8SStefano Zampini   if (!pcbddc->graphanalyzed) {
1645674ae819SStefano Zampini     ierr = PCBDDCAnalyzeInterface(pc);CHKERRQ(ierr);
16468de1fae6SStefano Zampini     computeconstraintsmatrix = PETSC_TRUE;
1647345ecf6cSStefano Zampini     if (pcbddc->adaptive_selection && !pcbddc->use_deluxe_scaling && !pcbddc->mat_graph->twodim) {
1648345ecf6cSStefano Zampini       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Cannot compute the adaptive primal space for a problem with 3D edges without deluxe scaling");
1649345ecf6cSStefano Zampini     }
1650a198735bSStefano Zampini     if (pcbddc->compute_nonetflux) {
1651669cc0f4SStefano Zampini       MatNullSpace nnfnnsp;
1652669cc0f4SStefano Zampini 
16538ae0ca82SStefano Zampini       ierr = PCBDDCComputeNoNetFlux(pc->pmat,pcbddc->divudotp,pcbddc->divudotp_trans,pcbddc->divudotp_vl2l,pcbddc->mat_graph,&nnfnnsp);CHKERRQ(ierr);
165471582508SStefano Zampini       /* TODO what if a nearnullspace is already attached? */
1655669cc0f4SStefano Zampini       ierr = MatSetNearNullSpace(pc->pmat,nnfnnsp);CHKERRQ(ierr);
1656669cc0f4SStefano Zampini       ierr = MatNullSpaceDestroy(&nnfnnsp);CHKERRQ(ierr);
1657669cc0f4SStefano Zampini     }
1658674ae819SStefano Zampini   }
1659fb8d54d4SStefano Zampini 
16605408967cSStefano Zampini   /* check existence of a divergence free extension, i.e.
16615408967cSStefano Zampini      b(v_I,p_0) = 0 for all v_I (raise error if not).
16625408967cSStefano Zampini      Also, check that PCBDDCBenignGetOrSetP0 works */
16635408967cSStefano Zampini #if defined(PETSC_USE_DEBUG)
166409f581a4SStefano Zampini   if (pcbddc->benign_saddle_point) {
16655408967cSStefano Zampini     ierr = PCBDDCBenignCheck(pc,zerodiag);CHKERRQ(ierr);
166609f581a4SStefano Zampini   }
16675408967cSStefano Zampini #endif
16684f1b2e48SStefano Zampini   ierr = ISDestroy(&zerodiag);CHKERRQ(ierr);
166906f24817SStefano Zampini 
1670b96c3477SStefano Zampini   /* Setup local dirichlet solver ksp_D and sub_schurs solvers */
1671c703fcc7SStefano Zampini   if (computesubschurs && pcbddc->recompute_topography) {
167208122e43SStefano Zampini     ierr = PCBDDCInitSubSchurs(pc);CHKERRQ(ierr);
1673b1b3d7a2SStefano Zampini   }
16749d54b7f4SStefano Zampini   /* SetUp Scaling operator (scaling matrices could be needed in SubSchursSetUp)*/
16759d54b7f4SStefano Zampini   if (!pcbddc->use_deluxe_scaling) {
16769d54b7f4SStefano Zampini     ierr = PCBDDCScalingSetUp(pc);CHKERRQ(ierr);
16779d54b7f4SStefano Zampini   }
1678c703fcc7SStefano Zampini 
1679c703fcc7SStefano Zampini   /* finish setup solvers and do adaptive selection of constraints */
1680b334f244SStefano Zampini   sub_schurs = pcbddc->sub_schurs;
1681b334f244SStefano Zampini   if (sub_schurs && sub_schurs->schur_explicit) {
16822070dbb6SStefano Zampini     if (computesubschurs) {
168308122e43SStefano Zampini       ierr = PCBDDCSetUpSubSchurs(pc);CHKERRQ(ierr);
16842070dbb6SStefano Zampini     }
1685d5574798SStefano Zampini     ierr = PCBDDCSetUpLocalSolvers(pc,PETSC_TRUE,PETSC_FALSE);CHKERRQ(ierr);
1686d5574798SStefano Zampini   } else {
1687d5574798SStefano Zampini     ierr = PCBDDCSetUpLocalSolvers(pc,PETSC_TRUE,PETSC_FALSE);CHKERRQ(ierr);
16882070dbb6SStefano Zampini     if (computesubschurs) {
1689d5574798SStefano Zampini       ierr = PCBDDCSetUpSubSchurs(pc);CHKERRQ(ierr);
1690d5574798SStefano Zampini     }
16912070dbb6SStefano Zampini   }
169208122e43SStefano Zampini   if (pcbddc->adaptive_selection) {
169308122e43SStefano Zampini     ierr = PCBDDCAdaptiveSelection(pc);CHKERRQ(ierr);
16948de1fae6SStefano Zampini     computeconstraintsmatrix = PETSC_TRUE;
1695b7eb3628SStefano Zampini   }
1696684f6988SStefano Zampini 
1697f4ddd8eeSStefano Zampini   /* infer if NullSpace object attached to Mat via MatSetNearNullSpace has changed */
1698fb8d54d4SStefano Zampini   new_nearnullspace_provided = PETSC_FALSE;
1699f4ddd8eeSStefano Zampini   ierr = MatGetNearNullSpace(pc->pmat,&nearnullspace);CHKERRQ(ierr);
1700f4ddd8eeSStefano Zampini   if (pcbddc->onearnullspace) { /* already used nearnullspace */
1701f4ddd8eeSStefano Zampini     if (!nearnullspace) { /* near null space attached to mat has been destroyed */
1702f4ddd8eeSStefano Zampini       new_nearnullspace_provided = PETSC_TRUE;
1703f4ddd8eeSStefano Zampini     } else {
1704f4ddd8eeSStefano Zampini       /* determine if the two nullspaces are different (should be lightweight) */
1705f4ddd8eeSStefano Zampini       if (nearnullspace != pcbddc->onearnullspace) {
1706f4ddd8eeSStefano Zampini         new_nearnullspace_provided = PETSC_TRUE;
1707165b64e2SStefano Zampini       } else { /* maybe the user has changed the content of the nearnullspace so check vectors ObjectStateId */
1708f4ddd8eeSStefano Zampini         PetscInt         i;
1709165b64e2SStefano Zampini         const Vec        *nearnullvecs;
1710165b64e2SStefano Zampini         PetscObjectState state;
1711165b64e2SStefano Zampini         PetscInt         nnsp_size;
1712165b64e2SStefano Zampini         ierr = MatNullSpaceGetVecs(nearnullspace,NULL,&nnsp_size,&nearnullvecs);CHKERRQ(ierr);
1713f4ddd8eeSStefano Zampini         for (i=0;i<nnsp_size;i++) {
1714f4ddd8eeSStefano Zampini           ierr = PetscObjectStateGet((PetscObject)nearnullvecs[i],&state);CHKERRQ(ierr);
1715165b64e2SStefano Zampini           if (pcbddc->onearnullvecs_state[i] != state) {
1716f4ddd8eeSStefano Zampini             new_nearnullspace_provided = PETSC_TRUE;
1717f4ddd8eeSStefano Zampini             break;
1718f4ddd8eeSStefano Zampini           }
1719f4ddd8eeSStefano Zampini         }
1720f4ddd8eeSStefano Zampini       }
1721f4ddd8eeSStefano Zampini     }
1722f4ddd8eeSStefano Zampini   } else {
1723f4ddd8eeSStefano Zampini     if (!nearnullspace) { /* both nearnullspaces are null */
1724f4ddd8eeSStefano Zampini       new_nearnullspace_provided = PETSC_FALSE;
1725f4ddd8eeSStefano Zampini     } else { /* nearnullspace attached later */
1726f4ddd8eeSStefano Zampini       new_nearnullspace_provided = PETSC_TRUE;
1727f4ddd8eeSStefano Zampini     }
1728f4ddd8eeSStefano Zampini   }
1729f4ddd8eeSStefano Zampini 
1730f4ddd8eeSStefano Zampini   /* Setup constraints and related work vectors */
1731727cdba6SStefano Zampini   /* reset primal space flags */
1732f4ddd8eeSStefano Zampini   pcbddc->new_primal_space = PETSC_FALSE;
1733727cdba6SStefano Zampini   pcbddc->new_primal_space_local = PETSC_FALSE;
17348de1fae6SStefano Zampini   if (computeconstraintsmatrix || new_nearnullspace_provided) {
1735727cdba6SStefano Zampini     /* It also sets the primal space flags */
1736674ae819SStefano Zampini     ierr = PCBDDCConstraintsSetUp(pc);CHKERRQ(ierr);
17379543d0ffSStefano Zampini   }
1738e7b262bdSStefano Zampini   /* Allocate needed local vectors (which depends on quantities defined during ConstraintsSetUp) */
1739f4ddd8eeSStefano Zampini   ierr = PCBDDCSetUpLocalWorkVectors(pc);CHKERRQ(ierr);
17405e8657edSStefano Zampini 
17415e8657edSStefano Zampini   if (pcbddc->use_change_of_basis) {
17425e8657edSStefano Zampini     PC_IS *pcis = (PC_IS*)(pc->data);
17435e8657edSStefano Zampini 
17445e8657edSStefano Zampini     ierr = PCBDDCComputeLocalMatrix(pc,pcbddc->ChangeOfBasisMatrix);CHKERRQ(ierr);
17454f1b2e48SStefano Zampini     if (pcbddc->benign_change) {
17461dd7afcfSStefano Zampini       ierr = MatDestroy(&pcbddc->benign_B0);CHKERRQ(ierr);
1747c263805aSStefano Zampini       /* pop B0 from pcbddc->local_mat */
1748c263805aSStefano Zampini       ierr = PCBDDCBenignPopOrPushB0(pc,PETSC_TRUE);CHKERRQ(ierr);
1749c263805aSStefano Zampini     }
17505e8657edSStefano Zampini     /* get submatrices */
17515e8657edSStefano Zampini     ierr = MatDestroy(&pcis->A_IB);CHKERRQ(ierr);
17525e8657edSStefano Zampini     ierr = MatDestroy(&pcis->A_BI);CHKERRQ(ierr);
17535e8657edSStefano Zampini     ierr = MatDestroy(&pcis->A_BB);CHKERRQ(ierr);
17545e8657edSStefano Zampini     ierr = MatGetSubMatrix(pcbddc->local_mat,pcis->is_B_local,pcis->is_B_local,MAT_INITIAL_MATRIX,&pcis->A_BB);CHKERRQ(ierr);
17555e8657edSStefano Zampini     ierr = MatGetSubMatrix(pcbddc->local_mat,pcis->is_I_local,pcis->is_B_local,MAT_INITIAL_MATRIX,&pcis->A_IB);CHKERRQ(ierr);
17565e8657edSStefano Zampini     ierr = MatGetSubMatrix(pcbddc->local_mat,pcis->is_B_local,pcis->is_I_local,MAT_INITIAL_MATRIX,&pcis->A_BI);CHKERRQ(ierr);
17573975b054SStefano Zampini     /* set flag in pcis to not reuse submatrices during PCISCreate */
17583975b054SStefano Zampini     pcis->reusesubmatrices = PETSC_FALSE;
17599c6a02ceSStefano Zampini   } else if (!pcbddc->user_ChangeOfBasisMatrix && !pcbddc->benign_change) {
1760b96c3477SStefano Zampini     ierr = MatDestroy(&pcbddc->local_mat);CHKERRQ(ierr);
17615e8657edSStefano Zampini     ierr = PetscObjectReference((PetscObject)matis->A);CHKERRQ(ierr);
17625e8657edSStefano Zampini     pcbddc->local_mat = matis->A;
17635e8657edSStefano Zampini   }
1764b96c3477SStefano Zampini   /* SetUp coarse and local Neumann solvers */
176599cc7994SStefano Zampini   ierr = PCBDDCSetUpSolvers(pc);CHKERRQ(ierr);
1766b96c3477SStefano Zampini   /* SetUp Scaling operator */
17679d54b7f4SStefano Zampini   if (pcbddc->use_deluxe_scaling) {
1768674ae819SStefano Zampini     ierr = PCBDDCScalingSetUp(pc);CHKERRQ(ierr);
17690c7d97c5SJed Brown   }
1770c703fcc7SStefano Zampini 
17711dd7afcfSStefano Zampini   /* mark topography as done */
177256282151SStefano Zampini   pcbddc->recompute_topography = PETSC_FALSE;
17730369aaf7SStefano Zampini 
17741dd7afcfSStefano Zampini   /* wrap pcis->A_IB and pcis->A_BI if we did not change explicitly the variables on the pressures */
17751dd7afcfSStefano Zampini   ierr = PCBDDCBenignShellMat(pc,PETSC_FALSE);CHKERRQ(ierr);
17761dd7afcfSStefano Zampini 
177758a03d70SStefano Zampini   if (pcbddc->dbg_flag) {
177858a03d70SStefano Zampini     ierr = PetscViewerASCIISubtractTab(pcbddc->dbg_viewer,2*pcbddc->current_level);CHKERRQ(ierr);
17792b510759SStefano Zampini   }
17800c7d97c5SJed Brown   PetscFunctionReturn(0);
17810c7d97c5SJed Brown }
17820c7d97c5SJed Brown 
17830c7d97c5SJed Brown /*
178450efa1b5SStefano Zampini    PCApply_BDDC - Applies the BDDC operator to a vector.
17850c7d97c5SJed Brown 
17860c7d97c5SJed Brown    Input Parameters:
17870f202f7eSStefano Zampini +  pc - the preconditioner context
17880f202f7eSStefano Zampini -  r - input vector (global)
17890c7d97c5SJed Brown 
17900c7d97c5SJed Brown    Output Parameter:
17910c7d97c5SJed Brown .  z - output vector (global)
17920c7d97c5SJed Brown 
17930c7d97c5SJed Brown    Application Interface Routine: PCApply()
17940c7d97c5SJed Brown  */
17950c7d97c5SJed Brown #undef __FUNCT__
17960c7d97c5SJed Brown #define __FUNCT__ "PCApply_BDDC"
179753cdbc3dSStefano Zampini PetscErrorCode PCApply_BDDC(PC pc,Vec r,Vec z)
17980c7d97c5SJed Brown {
17990c7d97c5SJed Brown   PC_IS             *pcis = (PC_IS*)(pc->data);
18000c7d97c5SJed Brown   PC_BDDC           *pcbddc = (PC_BDDC*)(pc->data);
1801b097fa66SStefano Zampini   PetscInt          n_B = pcis->n_B, n_D = pcis->n - n_B;
18020c7d97c5SJed Brown   PetscErrorCode    ierr;
18033b03a366Sstefano_zampini   const PetscScalar one = 1.0;
18043b03a366Sstefano_zampini   const PetscScalar m_one = -1.0;
18052617d88aSStefano Zampini   const PetscScalar zero = 0.0;
18060c7d97c5SJed Brown 
18070c7d97c5SJed Brown /* This code is similar to that provided in nn.c for PCNN
18080c7d97c5SJed Brown    NN interface preconditioner changed to BDDC
1809b097fa66SStefano Zampini    Added support for M_3 preconditioner in the reference article (code is active if pcbddc->switch_static == PETSC_TRUE) */
18100c7d97c5SJed Brown 
18110c7d97c5SJed Brown   PetscFunctionBegin;
18121dd7afcfSStefano Zampini   if (pcbddc->ChangeOfBasisMatrix) {
18131dd7afcfSStefano Zampini     Vec swap;
181427b6a85dSStefano Zampini 
181527b6a85dSStefano Zampini     ierr = MatMultTranspose(pcbddc->ChangeOfBasisMatrix,r,pcbddc->work_change);CHKERRQ(ierr);
18161dd7afcfSStefano Zampini     swap = pcbddc->work_change;
18171dd7afcfSStefano Zampini     pcbddc->work_change = r;
18181dd7afcfSStefano Zampini     r = swap;
18191dd7afcfSStefano Zampini     /* save rhs so that we don't need to apply the change of basis for the exact dirichlet trick in PreSolve */
1820*9cc2a9b1Sstefano_zampini     if (pcbddc->benign_apply_coarse_only && pcbddc->use_exact_dirichlet_trick && pcbddc->change_interior) {
18211dd7afcfSStefano Zampini       ierr = VecCopy(r,pcis->vec1_global);CHKERRQ(ierr);
18221dd7afcfSStefano Zampini       ierr = VecLockPush(pcis->vec1_global);CHKERRQ(ierr);
18231dd7afcfSStefano Zampini     }
18241dd7afcfSStefano Zampini   }
182527b6a85dSStefano Zampini   if (pcbddc->benign_have_null) { /* get p0 from r */
1826015636ebSStefano Zampini     ierr = PCBDDCBenignGetOrSetP0(pc,r,PETSC_TRUE);CHKERRQ(ierr);
1827efc2fbd9SStefano Zampini   }
18288ae0ca82SStefano Zampini   if (!pcbddc->exact_dirichlet_trick_app && !pcbddc->benign_apply_coarse_only) {
1829b097fa66SStefano Zampini     ierr = VecCopy(r,z);CHKERRQ(ierr);
18300c7d97c5SJed Brown     /* First Dirichlet solve */
18310c7d97c5SJed Brown     ierr = VecScatterBegin(pcis->global_to_D,r,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
18320c7d97c5SJed Brown     ierr = VecScatterEnd(pcis->global_to_D,r,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
18330c7d97c5SJed Brown     /*
18340c7d97c5SJed Brown       Assembling right hand side for BDDC operator
1835b097fa66SStefano Zampini       - pcis->vec1_D for the Dirichlet part (if needed, i.e. pcbddc->switch_static == PETSC_TRUE)
1836674ae819SStefano Zampini       - pcis->vec1_B the interface part of the global vector z
18370c7d97c5SJed Brown     */
1838b097fa66SStefano Zampini     if (n_D) {
1839b097fa66SStefano Zampini       ierr = KSPSolve(pcbddc->ksp_D,pcis->vec1_D,pcis->vec2_D);CHKERRQ(ierr);
18400c7d97c5SJed Brown       ierr = VecScale(pcis->vec2_D,m_one);CHKERRQ(ierr);
184116909a7fSStefano Zampini       if (pcbddc->switch_static) {
184216909a7fSStefano Zampini         Mat_IS *matis = (Mat_IS*)(pc->mat->data);
184316909a7fSStefano Zampini 
184416909a7fSStefano Zampini         ierr = VecSet(pcis->vec1_N,0.);CHKERRQ(ierr);
184516909a7fSStefano Zampini         ierr = VecScatterBegin(pcis->N_to_D,pcis->vec2_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
184616909a7fSStefano Zampini         ierr = VecScatterEnd(pcis->N_to_D,pcis->vec2_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
184716909a7fSStefano Zampini         if (!pcbddc->switch_static_change) {
184816909a7fSStefano Zampini           ierr = MatMult(matis->A,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
184916909a7fSStefano Zampini         } else {
185016909a7fSStefano Zampini           ierr = MatMult(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
185116909a7fSStefano Zampini           ierr = MatMult(matis->A,pcis->vec2_N,pcis->vec1_N);CHKERRQ(ierr);
185216909a7fSStefano Zampini           ierr = MatMultTranspose(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
185316909a7fSStefano Zampini         }
185416909a7fSStefano Zampini         ierr = VecScatterBegin(pcis->N_to_D,pcis->vec2_N,pcis->vec1_D,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
185516909a7fSStefano Zampini         ierr = VecScatterEnd(pcis->N_to_D,pcis->vec2_N,pcis->vec1_D,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
185616909a7fSStefano Zampini         ierr = VecScatterBegin(pcis->N_to_B,pcis->vec2_N,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
185716909a7fSStefano Zampini         ierr = VecScatterEnd(pcis->N_to_B,pcis->vec2_N,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
185816909a7fSStefano Zampini       } else {
1859b097fa66SStefano Zampini         ierr = MatMult(pcis->A_BI,pcis->vec2_D,pcis->vec1_B);CHKERRQ(ierr);
186016909a7fSStefano Zampini       }
1861b097fa66SStefano Zampini     } else {
1862b097fa66SStefano Zampini       ierr = VecSet(pcis->vec1_B,zero);CHKERRQ(ierr);
1863b097fa66SStefano Zampini     }
18640c7d97c5SJed Brown     ierr = VecScatterBegin(pcis->global_to_B,pcis->vec1_B,z,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
18650c7d97c5SJed Brown     ierr = VecScatterEnd(pcis->global_to_B,pcis->vec1_B,z,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1866674ae819SStefano Zampini     ierr = PCBDDCScalingRestriction(pc,z,pcis->vec1_B);CHKERRQ(ierr);
1867b76ba322SStefano Zampini   } else {
18684fee134fSStefano Zampini     if (!pcbddc->benign_apply_coarse_only) {
1869674ae819SStefano Zampini       ierr = PCBDDCScalingRestriction(pc,r,pcis->vec1_B);CHKERRQ(ierr);
1870b76ba322SStefano Zampini     }
18714fee134fSStefano Zampini   }
1872b76ba322SStefano Zampini 
18732617d88aSStefano Zampini   /* Apply interface preconditioner
18742617d88aSStefano Zampini      input/output vecs: pcis->vec1_B and pcis->vec1_D */
1875dc359a40SStefano Zampini   ierr = PCBDDCApplyInterfacePreconditioner(pc,PETSC_FALSE);CHKERRQ(ierr);
18762617d88aSStefano Zampini 
1877674ae819SStefano Zampini   /* Apply transpose of partition of unity operator */
1878674ae819SStefano Zampini   ierr = PCBDDCScalingExtension(pc,pcis->vec1_B,z);CHKERRQ(ierr);
18790c7d97c5SJed Brown 
18803b03a366Sstefano_zampini   /* Second Dirichlet solve and assembling of output */
18810c7d97c5SJed Brown   ierr = VecScatterBegin(pcis->global_to_B,z,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
18820c7d97c5SJed Brown   ierr = VecScatterEnd(pcis->global_to_B,z,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1883b097fa66SStefano Zampini   if (n_B) {
188416909a7fSStefano Zampini     if (pcbddc->switch_static) {
188516909a7fSStefano Zampini       Mat_IS *matis = (Mat_IS*)(pc->mat->data);
188616909a7fSStefano Zampini 
188716909a7fSStefano Zampini       ierr = VecScatterBegin(pcis->N_to_D,pcis->vec1_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
188816909a7fSStefano Zampini       ierr = VecScatterEnd(pcis->N_to_D,pcis->vec1_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
188916909a7fSStefano Zampini       ierr = VecScatterBegin(pcis->N_to_B,pcis->vec1_B,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
189016909a7fSStefano Zampini       ierr = VecScatterEnd(pcis->N_to_B,pcis->vec1_B,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
189116909a7fSStefano Zampini       if (!pcbddc->switch_static_change) {
189216909a7fSStefano Zampini         ierr = MatMult(matis->A,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
189316909a7fSStefano Zampini       } else {
189416909a7fSStefano Zampini         ierr = MatMult(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
189516909a7fSStefano Zampini         ierr = MatMult(matis->A,pcis->vec2_N,pcis->vec1_N);CHKERRQ(ierr);
189616909a7fSStefano Zampini         ierr = MatMultTranspose(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
189716909a7fSStefano Zampini       }
189816909a7fSStefano Zampini       ierr = VecScatterBegin(pcis->N_to_D,pcis->vec2_N,pcis->vec3_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
189916909a7fSStefano Zampini       ierr = VecScatterEnd(pcis->N_to_D,pcis->vec2_N,pcis->vec3_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
190016909a7fSStefano Zampini     } else {
19010c7d97c5SJed Brown       ierr = MatMult(pcis->A_IB,pcis->vec1_B,pcis->vec3_D);CHKERRQ(ierr);
190216909a7fSStefano Zampini     }
190316909a7fSStefano Zampini   } else if (pcbddc->switch_static) { /* n_B is zero */
190416909a7fSStefano Zampini     Mat_IS *matis = (Mat_IS*)(pc->mat->data);
190516909a7fSStefano Zampini 
190616909a7fSStefano Zampini     if (!pcbddc->switch_static_change) {
190716909a7fSStefano Zampini       ierr = MatMult(matis->A,pcis->vec1_D,pcis->vec3_D);CHKERRQ(ierr);
190816909a7fSStefano Zampini     } else {
190916909a7fSStefano Zampini       ierr = MatMult(pcbddc->switch_static_change,pcis->vec1_D,pcis->vec1_N);CHKERRQ(ierr);
191016909a7fSStefano Zampini       ierr = MatMult(matis->A,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
191116909a7fSStefano Zampini       ierr = MatMultTranspose(pcbddc->switch_static_change,pcis->vec2_N,pcis->vec3_D);CHKERRQ(ierr);
191216909a7fSStefano Zampini     }
1913b097fa66SStefano Zampini   }
1914df187020SStefano Zampini   ierr = KSPSolve(pcbddc->ksp_D,pcis->vec3_D,pcis->vec4_D);CHKERRQ(ierr);
1915efc2fbd9SStefano Zampini 
19168ae0ca82SStefano Zampini   if (!pcbddc->exact_dirichlet_trick_app && !pcbddc->benign_apply_coarse_only) {
1917b097fa66SStefano Zampini     if (pcbddc->switch_static) {
1918b097fa66SStefano Zampini       ierr = VecAXPBYPCZ(pcis->vec2_D,m_one,one,m_one,pcis->vec4_D,pcis->vec1_D);CHKERRQ(ierr);
1919b097fa66SStefano Zampini     } else {
1920b097fa66SStefano Zampini       ierr = VecAXPBY(pcis->vec2_D,m_one,m_one,pcis->vec4_D);CHKERRQ(ierr);
1921b097fa66SStefano Zampini     }
19220c7d97c5SJed Brown     ierr = VecScatterBegin(pcis->global_to_D,pcis->vec2_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
19230c7d97c5SJed Brown     ierr = VecScatterEnd(pcis->global_to_D,pcis->vec2_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1924b097fa66SStefano Zampini   } else {
1925b097fa66SStefano Zampini     if (pcbddc->switch_static) {
1926b097fa66SStefano Zampini       ierr = VecAXPBY(pcis->vec4_D,one,m_one,pcis->vec1_D);CHKERRQ(ierr);
1927b097fa66SStefano Zampini     } else {
1928b097fa66SStefano Zampini       ierr = VecScale(pcis->vec4_D,m_one);CHKERRQ(ierr);
1929b097fa66SStefano Zampini     }
1930b097fa66SStefano Zampini     ierr = VecScatterBegin(pcis->global_to_D,pcis->vec4_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1931b097fa66SStefano Zampini     ierr = VecScatterEnd(pcis->global_to_D,pcis->vec4_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1932b097fa66SStefano Zampini   }
193327b6a85dSStefano Zampini   if (pcbddc->benign_have_null) { /* set p0 (computed in PCBDDCApplyInterface) */
19341dd7afcfSStefano Zampini     if (pcbddc->benign_apply_coarse_only) {
19351dd7afcfSStefano Zampini       ierr = PetscMemzero(pcbddc->benign_p0,pcbddc->benign_n*sizeof(PetscScalar));CHKERRQ(ierr);
19361dd7afcfSStefano Zampini     }
1937015636ebSStefano Zampini     ierr = PCBDDCBenignGetOrSetP0(pc,z,PETSC_FALSE);CHKERRQ(ierr);
1938efc2fbd9SStefano Zampini   }
19391f4df5f7SStefano Zampini 
19401dd7afcfSStefano Zampini   if (pcbddc->ChangeOfBasisMatrix) {
1941f913dca9SStefano Zampini     pcbddc->work_change = r;
19421dd7afcfSStefano Zampini     ierr = VecCopy(z,pcbddc->work_change);CHKERRQ(ierr);
19431dd7afcfSStefano Zampini     ierr = MatMult(pcbddc->ChangeOfBasisMatrix,pcbddc->work_change,z);CHKERRQ(ierr);
19441dd7afcfSStefano Zampini   }
19450c7d97c5SJed Brown   PetscFunctionReturn(0);
19460c7d97c5SJed Brown }
194750efa1b5SStefano Zampini 
194850efa1b5SStefano Zampini /*
194950efa1b5SStefano Zampini    PCApplyTranspose_BDDC - Applies the transpose of the BDDC operator to a vector.
195050efa1b5SStefano Zampini 
195150efa1b5SStefano Zampini    Input Parameters:
19520f202f7eSStefano Zampini +  pc - the preconditioner context
19530f202f7eSStefano Zampini -  r - input vector (global)
195450efa1b5SStefano Zampini 
195550efa1b5SStefano Zampini    Output Parameter:
195650efa1b5SStefano Zampini .  z - output vector (global)
195750efa1b5SStefano Zampini 
195850efa1b5SStefano Zampini    Application Interface Routine: PCApplyTranspose()
195950efa1b5SStefano Zampini  */
196050efa1b5SStefano Zampini #undef __FUNCT__
196150efa1b5SStefano Zampini #define __FUNCT__ "PCApplyTranspose_BDDC"
196250efa1b5SStefano Zampini PetscErrorCode PCApplyTranspose_BDDC(PC pc,Vec r,Vec z)
196350efa1b5SStefano Zampini {
196450efa1b5SStefano Zampini   PC_IS             *pcis = (PC_IS*)(pc->data);
196550efa1b5SStefano Zampini   PC_BDDC           *pcbddc = (PC_BDDC*)(pc->data);
1966b097fa66SStefano Zampini   PetscInt          n_B = pcis->n_B, n_D = pcis->n - n_B;
196750efa1b5SStefano Zampini   PetscErrorCode    ierr;
196850efa1b5SStefano Zampini   const PetscScalar one = 1.0;
196950efa1b5SStefano Zampini   const PetscScalar m_one = -1.0;
197050efa1b5SStefano Zampini   const PetscScalar zero = 0.0;
197150efa1b5SStefano Zampini 
197250efa1b5SStefano Zampini   PetscFunctionBegin;
19731dd7afcfSStefano Zampini   if (pcbddc->ChangeOfBasisMatrix) {
19741dd7afcfSStefano Zampini     Vec swap;
197527b6a85dSStefano Zampini 
197627b6a85dSStefano Zampini     ierr = MatMultTranspose(pcbddc->ChangeOfBasisMatrix,r,pcbddc->work_change);CHKERRQ(ierr);
19771dd7afcfSStefano Zampini     swap = pcbddc->work_change;
19781dd7afcfSStefano Zampini     pcbddc->work_change = r;
19791dd7afcfSStefano Zampini     r = swap;
198027b6a85dSStefano Zampini     /* save rhs so that we don't need to apply the change of basis for the exact dirichlet trick in PreSolve */
19818ae0ca82SStefano Zampini     if (pcbddc->benign_apply_coarse_only && pcbddc->exact_dirichlet_trick_app && pcbddc->change_interior) {
198227b6a85dSStefano Zampini       ierr = VecCopy(r,pcis->vec1_global);CHKERRQ(ierr);
198327b6a85dSStefano Zampini       ierr = VecLockPush(pcis->vec1_global);CHKERRQ(ierr);
19841dd7afcfSStefano Zampini     }
198527b6a85dSStefano Zampini   }
198627b6a85dSStefano Zampini   if (pcbddc->benign_have_null) { /* get p0 from r */
1987537c1cdfSStefano Zampini     ierr = PCBDDCBenignGetOrSetP0(pc,r,PETSC_TRUE);CHKERRQ(ierr);
1988537c1cdfSStefano Zampini   }
19898ae0ca82SStefano Zampini   if (!pcbddc->exact_dirichlet_trick_app && !pcbddc->benign_apply_coarse_only) {
1990b097fa66SStefano Zampini     ierr = VecCopy(r,z);CHKERRQ(ierr);
199150efa1b5SStefano Zampini     /* First Dirichlet solve */
199250efa1b5SStefano Zampini     ierr = VecScatterBegin(pcis->global_to_D,r,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
199350efa1b5SStefano Zampini     ierr = VecScatterEnd(pcis->global_to_D,r,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
199450efa1b5SStefano Zampini     /*
199550efa1b5SStefano Zampini       Assembling right hand side for BDDC operator
1996b097fa66SStefano Zampini       - pcis->vec1_D for the Dirichlet part (if needed, i.e. pcbddc->switch_static == PETSC_TRUE)
199750efa1b5SStefano Zampini       - pcis->vec1_B the interface part of the global vector z
199850efa1b5SStefano Zampini     */
1999b097fa66SStefano Zampini     if (n_D) {
2000b097fa66SStefano Zampini       ierr = KSPSolveTranspose(pcbddc->ksp_D,pcis->vec1_D,pcis->vec2_D);CHKERRQ(ierr);
200150efa1b5SStefano Zampini       ierr = VecScale(pcis->vec2_D,m_one);CHKERRQ(ierr);
200216909a7fSStefano Zampini       if (pcbddc->switch_static) {
200316909a7fSStefano Zampini         Mat_IS *matis = (Mat_IS*)(pc->mat->data);
200416909a7fSStefano Zampini 
200516909a7fSStefano Zampini         ierr = VecSet(pcis->vec1_N,0.);CHKERRQ(ierr);
200616909a7fSStefano Zampini         ierr = VecScatterBegin(pcis->N_to_D,pcis->vec2_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
200716909a7fSStefano Zampini         ierr = VecScatterEnd(pcis->N_to_D,pcis->vec2_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
200816909a7fSStefano Zampini         if (!pcbddc->switch_static_change) {
200916909a7fSStefano Zampini           ierr = MatMultTranspose(matis->A,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
201016909a7fSStefano Zampini         } else {
201116909a7fSStefano Zampini           ierr = MatMult(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
201216909a7fSStefano Zampini           ierr = MatMultTranspose(matis->A,pcis->vec2_N,pcis->vec1_N);CHKERRQ(ierr);
201316909a7fSStefano Zampini           ierr = MatMultTranspose(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
201416909a7fSStefano Zampini         }
201516909a7fSStefano Zampini         ierr = VecScatterBegin(pcis->N_to_D,pcis->vec2_N,pcis->vec1_D,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
201616909a7fSStefano Zampini         ierr = VecScatterEnd(pcis->N_to_D,pcis->vec2_N,pcis->vec1_D,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
201716909a7fSStefano Zampini         ierr = VecScatterBegin(pcis->N_to_B,pcis->vec2_N,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
201816909a7fSStefano Zampini         ierr = VecScatterEnd(pcis->N_to_B,pcis->vec2_N,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
201916909a7fSStefano Zampini       } else {
2020b097fa66SStefano Zampini         ierr = MatMultTranspose(pcis->A_IB,pcis->vec2_D,pcis->vec1_B);CHKERRQ(ierr);
202116909a7fSStefano Zampini       }
2022b097fa66SStefano Zampini     } else {
2023b097fa66SStefano Zampini       ierr = VecSet(pcis->vec1_B,zero);CHKERRQ(ierr);
2024b097fa66SStefano Zampini     }
202550efa1b5SStefano Zampini     ierr = VecScatterBegin(pcis->global_to_B,pcis->vec1_B,z,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
202650efa1b5SStefano Zampini     ierr = VecScatterEnd(pcis->global_to_B,pcis->vec1_B,z,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
202750efa1b5SStefano Zampini     ierr = PCBDDCScalingRestriction(pc,z,pcis->vec1_B);CHKERRQ(ierr);
202850efa1b5SStefano Zampini   } else {
202950efa1b5SStefano Zampini     ierr = PCBDDCScalingRestriction(pc,r,pcis->vec1_B);CHKERRQ(ierr);
203050efa1b5SStefano Zampini   }
203150efa1b5SStefano Zampini 
203250efa1b5SStefano Zampini   /* Apply interface preconditioner
203350efa1b5SStefano Zampini      input/output vecs: pcis->vec1_B and pcis->vec1_D */
2034dc359a40SStefano Zampini   ierr = PCBDDCApplyInterfacePreconditioner(pc,PETSC_TRUE);CHKERRQ(ierr);
203550efa1b5SStefano Zampini 
203650efa1b5SStefano Zampini   /* Apply transpose of partition of unity operator */
203750efa1b5SStefano Zampini   ierr = PCBDDCScalingExtension(pc,pcis->vec1_B,z);CHKERRQ(ierr);
203850efa1b5SStefano Zampini 
203950efa1b5SStefano Zampini   /* Second Dirichlet solve and assembling of output */
204050efa1b5SStefano Zampini   ierr = VecScatterBegin(pcis->global_to_B,z,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
204150efa1b5SStefano Zampini   ierr = VecScatterEnd(pcis->global_to_B,z,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2042b097fa66SStefano Zampini   if (n_B) {
204316909a7fSStefano Zampini     if (pcbddc->switch_static) {
204416909a7fSStefano Zampini       Mat_IS *matis = (Mat_IS*)(pc->mat->data);
204516909a7fSStefano Zampini 
204616909a7fSStefano Zampini       ierr = VecScatterBegin(pcis->N_to_D,pcis->vec1_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
204716909a7fSStefano Zampini       ierr = VecScatterEnd(pcis->N_to_D,pcis->vec1_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
204816909a7fSStefano Zampini       ierr = VecScatterBegin(pcis->N_to_B,pcis->vec1_B,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
204916909a7fSStefano Zampini       ierr = VecScatterEnd(pcis->N_to_B,pcis->vec1_B,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
205016909a7fSStefano Zampini       if (!pcbddc->switch_static_change) {
205116909a7fSStefano Zampini         ierr = MatMultTranspose(matis->A,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
205216909a7fSStefano Zampini       } else {
205316909a7fSStefano Zampini         ierr = MatMult(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
205416909a7fSStefano Zampini         ierr = MatMultTranspose(matis->A,pcis->vec2_N,pcis->vec1_N);CHKERRQ(ierr);
205516909a7fSStefano Zampini         ierr = MatMultTranspose(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
205616909a7fSStefano Zampini       }
205716909a7fSStefano Zampini       ierr = VecScatterBegin(pcis->N_to_D,pcis->vec2_N,pcis->vec3_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
205816909a7fSStefano Zampini       ierr = VecScatterEnd(pcis->N_to_D,pcis->vec2_N,pcis->vec3_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
205916909a7fSStefano Zampini     } else {
206050efa1b5SStefano Zampini       ierr = MatMultTranspose(pcis->A_BI,pcis->vec1_B,pcis->vec3_D);CHKERRQ(ierr);
206116909a7fSStefano Zampini     }
206216909a7fSStefano Zampini   } else if (pcbddc->switch_static) { /* n_B is zero */
206316909a7fSStefano Zampini     Mat_IS *matis = (Mat_IS*)(pc->mat->data);
206416909a7fSStefano Zampini 
206516909a7fSStefano Zampini     if (!pcbddc->switch_static_change) {
206616909a7fSStefano Zampini       ierr = MatMultTranspose(matis->A,pcis->vec1_D,pcis->vec3_D);CHKERRQ(ierr);
206716909a7fSStefano Zampini     } else {
206816909a7fSStefano Zampini       ierr = MatMult(pcbddc->switch_static_change,pcis->vec1_D,pcis->vec1_N);CHKERRQ(ierr);
206916909a7fSStefano Zampini       ierr = MatMultTranspose(matis->A,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
207016909a7fSStefano Zampini       ierr = MatMultTranspose(pcbddc->switch_static_change,pcis->vec2_N,pcis->vec3_D);CHKERRQ(ierr);
207116909a7fSStefano Zampini     }
2072b097fa66SStefano Zampini   }
2073b0147a47SStefano Zampini   ierr = KSPSolveTranspose(pcbddc->ksp_D,pcis->vec3_D,pcis->vec4_D);CHKERRQ(ierr);
20748ae0ca82SStefano Zampini   if (!pcbddc->exact_dirichlet_trick_app && !pcbddc->benign_apply_coarse_only) {
2075b097fa66SStefano Zampini     if (pcbddc->switch_static) {
2076b097fa66SStefano Zampini       ierr = VecAXPBYPCZ(pcis->vec2_D,m_one,one,m_one,pcis->vec4_D,pcis->vec1_D);CHKERRQ(ierr);
2077b097fa66SStefano Zampini     } else {
2078b097fa66SStefano Zampini       ierr = VecAXPBY(pcis->vec2_D,m_one,m_one,pcis->vec4_D);CHKERRQ(ierr);
2079b097fa66SStefano Zampini     }
208050efa1b5SStefano Zampini     ierr = VecScatterBegin(pcis->global_to_D,pcis->vec2_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
208150efa1b5SStefano Zampini     ierr = VecScatterEnd(pcis->global_to_D,pcis->vec2_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
2082b097fa66SStefano Zampini   } else {
2083b097fa66SStefano Zampini     if (pcbddc->switch_static) {
2084b097fa66SStefano Zampini       ierr = VecAXPBY(pcis->vec4_D,one,m_one,pcis->vec1_D);CHKERRQ(ierr);
2085b097fa66SStefano Zampini     } else {
2086b097fa66SStefano Zampini       ierr = VecScale(pcis->vec4_D,m_one);CHKERRQ(ierr);
2087b097fa66SStefano Zampini     }
2088b097fa66SStefano Zampini     ierr = VecScatterBegin(pcis->global_to_D,pcis->vec4_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
2089b097fa66SStefano Zampini     ierr = VecScatterEnd(pcis->global_to_D,pcis->vec4_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
2090b097fa66SStefano Zampini   }
209127b6a85dSStefano Zampini   if (pcbddc->benign_have_null) { /* set p0 (computed in PCBDDCApplyInterface) */
2092537c1cdfSStefano Zampini     ierr = PCBDDCBenignGetOrSetP0(pc,z,PETSC_FALSE);CHKERRQ(ierr);
2093537c1cdfSStefano Zampini   }
20941dd7afcfSStefano Zampini   if (pcbddc->ChangeOfBasisMatrix) {
2095f913dca9SStefano Zampini     pcbddc->work_change = r;
20961dd7afcfSStefano Zampini     ierr = VecCopy(z,pcbddc->work_change);CHKERRQ(ierr);
20971dd7afcfSStefano Zampini     ierr = MatMult(pcbddc->ChangeOfBasisMatrix,pcbddc->work_change,z);CHKERRQ(ierr);
20981dd7afcfSStefano Zampini   }
209950efa1b5SStefano Zampini   PetscFunctionReturn(0);
210050efa1b5SStefano Zampini }
2101674ae819SStefano Zampini 
2102da1bb401SStefano Zampini #undef __FUNCT__
2103da1bb401SStefano Zampini #define __FUNCT__ "PCDestroy_BDDC"
2104da1bb401SStefano Zampini PetscErrorCode PCDestroy_BDDC(PC pc)
2105da1bb401SStefano Zampini {
2106da1bb401SStefano Zampini   PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
2107da1bb401SStefano Zampini   PetscErrorCode ierr;
2108da1bb401SStefano Zampini 
2109da1bb401SStefano Zampini   PetscFunctionBegin;
2110674ae819SStefano Zampini   /* free BDDC custom data  */
2111674ae819SStefano Zampini   ierr = PCBDDCResetCustomization(pc);CHKERRQ(ierr);
2112674ae819SStefano Zampini   /* destroy objects related to topography */
2113674ae819SStefano Zampini   ierr = PCBDDCResetTopography(pc);CHKERRQ(ierr);
2114674ae819SStefano Zampini   /* free allocated graph structure */
2115da1bb401SStefano Zampini   ierr = PetscFree(pcbddc->mat_graph);CHKERRQ(ierr);
2116b96c3477SStefano Zampini   /* free allocated sub schurs structure */
2117b96c3477SStefano Zampini   ierr = PetscFree(pcbddc->sub_schurs);CHKERRQ(ierr);
211834a97f8cSStefano Zampini   /* destroy objects for scaling operator */
2119674ae819SStefano Zampini   ierr = PCBDDCScalingDestroy(pc);CHKERRQ(ierr);
212034a97f8cSStefano Zampini   ierr = PetscFree(pcbddc->deluxe_ctx);CHKERRQ(ierr);
2121674ae819SStefano Zampini   /* free solvers stuff */
2122674ae819SStefano Zampini   ierr = PCBDDCResetSolvers(pc);CHKERRQ(ierr);
212362a6ff1dSStefano Zampini   /* free global vectors needed in presolve */
212462a6ff1dSStefano Zampini   ierr = VecDestroy(&pcbddc->temp_solution);CHKERRQ(ierr);
212562a6ff1dSStefano Zampini   ierr = VecDestroy(&pcbddc->original_rhs);CHKERRQ(ierr);
21261dd7afcfSStefano Zampini   /* free data created by PCIS */
21271dd7afcfSStefano Zampini   ierr = PCISDestroy(pc);CHKERRQ(ierr);
21283425bc38SStefano Zampini   /* remove functions */
2129a13144ffSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDiscreteGradient_C",NULL);CHKERRQ(ierr);
2130a198735bSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDivergenceMat_C",NULL);CHKERRQ(ierr);
2131906d46d4SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetChangeOfBasisMat_C",NULL);CHKERRQ(ierr);
2132674ae819SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetPrimalVerticesLocalIS_C",NULL);CHKERRQ(ierr);
213330368db7SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetPrimalVerticesIS_C",NULL);CHKERRQ(ierr);
2134bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetCoarseningRatio_C",NULL);CHKERRQ(ierr);
21352b510759SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetLevel_C",NULL);CHKERRQ(ierr);
2136b8ffe317SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetUseExactDirichlet_C",NULL);CHKERRQ(ierr);
21372b510759SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetLevels_C",NULL);CHKERRQ(ierr);
2138bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDirichletBoundaries_C",NULL);CHKERRQ(ierr);
213982ba6b80SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDirichletBoundariesLocal_C",NULL);CHKERRQ(ierr);
2140bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetNeumannBoundaries_C",NULL);CHKERRQ(ierr);
214182ba6b80SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetNeumannBoundariesLocal_C",NULL);CHKERRQ(ierr);
2142bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetDirichletBoundaries_C",NULL);CHKERRQ(ierr);
214382ba6b80SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetDirichletBoundariesLocal_C",NULL);CHKERRQ(ierr);
2144bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetNeumannBoundaries_C",NULL);CHKERRQ(ierr);
2145785d1243SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetNeumannBoundariesLocal_C",NULL);CHKERRQ(ierr);
2146bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDofsSplitting_C",NULL);CHKERRQ(ierr);
214763602bcaSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDofsSplittingLocal_C",NULL);CHKERRQ(ierr);
2148bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetLocalAdjacencyGraph_C",NULL);CHKERRQ(ierr);
2149bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCCreateFETIDPOperators_C",NULL);CHKERRQ(ierr);
2150bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCMatFETIDPGetRHS_C",NULL);CHKERRQ(ierr);
2151bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCMatFETIDPGetSolution_C",NULL);CHKERRQ(ierr);
2152a06fd7f2SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCPreSolveChangeRHS_C",NULL);CHKERRQ(ierr);
2153674ae819SStefano Zampini   /* Free the private data structure */
2154674ae819SStefano Zampini   ierr = PetscFree(pc->data);CHKERRQ(ierr);
2155da1bb401SStefano Zampini   PetscFunctionReturn(0);
2156da1bb401SStefano Zampini }
21571e6b0712SBarry Smith 
21583425bc38SStefano Zampini #undef __FUNCT__
2159a06fd7f2SStefano Zampini #define __FUNCT__ "PCPreSolveChangeRHS_BDDC"
2160a06fd7f2SStefano Zampini static PetscErrorCode PCPreSolveChangeRHS_BDDC(PC pc, PetscBool* change)
2161a06fd7f2SStefano Zampini {
2162a06fd7f2SStefano Zampini   PetscFunctionBegin;
2163a06fd7f2SStefano Zampini   *change = PETSC_TRUE;
2164a06fd7f2SStefano Zampini   PetscFunctionReturn(0);
2165a06fd7f2SStefano Zampini }
2166a06fd7f2SStefano Zampini 
2167a06fd7f2SStefano Zampini #undef __FUNCT__
21683425bc38SStefano Zampini #define __FUNCT__ "PCBDDCMatFETIDPGetRHS_BDDC"
21693425bc38SStefano Zampini static PetscErrorCode PCBDDCMatFETIDPGetRHS_BDDC(Mat fetidp_mat, Vec standard_rhs, Vec fetidp_flux_rhs)
21703425bc38SStefano Zampini {
2171674ae819SStefano Zampini   FETIDPMat_ctx  mat_ctx;
2172266e20e9SStefano Zampini   Vec            work;
21733425bc38SStefano Zampini   PC_IS*         pcis;
21743425bc38SStefano Zampini   PC_BDDC*       pcbddc;
21753425bc38SStefano Zampini   PetscErrorCode ierr;
21760c7d97c5SJed Brown 
21773425bc38SStefano Zampini   PetscFunctionBegin;
21783425bc38SStefano Zampini   ierr = MatShellGetContext(fetidp_mat,&mat_ctx);CHKERRQ(ierr);
21793425bc38SStefano Zampini   pcis = (PC_IS*)mat_ctx->pc->data;
21803425bc38SStefano Zampini   pcbddc = (PC_BDDC*)mat_ctx->pc->data;
21813425bc38SStefano Zampini 
2182c08af4c6SStefano Zampini   /*
2183c08af4c6SStefano Zampini      change of basis for physical rhs if needed
2184c08af4c6SStefano Zampini      It also changes the rhs in case of dirichlet boundaries
2185c08af4c6SStefano Zampini   */
21863738a8e6SStefano Zampini   if (!pcbddc->original_rhs) {
21873738a8e6SStefano Zampini     ierr = VecDuplicate(pcis->vec1_global,&pcbddc->original_rhs);CHKERRQ(ierr);
21883738a8e6SStefano Zampini   }
21893738a8e6SStefano Zampini   ierr = VecCopy(standard_rhs,pcbddc->original_rhs);CHKERRQ(ierr);
21903738a8e6SStefano Zampini   ierr = PCPreSolve_BDDC(mat_ctx->pc,NULL,pcbddc->original_rhs,NULL);CHKERRQ(ierr);
2191fc17d649SStefano Zampini   if (pcbddc->ChangeOfBasisMatrix) {
21923738a8e6SStefano Zampini     ierr = MatMultTranspose(pcbddc->ChangeOfBasisMatrix,pcbddc->original_rhs,pcbddc->work_change);CHKERRQ(ierr);
21933738a8e6SStefano Zampini     work = pcbddc->work_change;
2194fc17d649SStefano Zampini    } else {
21953738a8e6SStefano Zampini     work = pcbddc->original_rhs;
2196fc17d649SStefano Zampini   }
21973425bc38SStefano Zampini   /* store vectors for computation of fetidp final solution */
2198266e20e9SStefano Zampini   ierr = VecScatterBegin(pcis->global_to_D,work,mat_ctx->temp_solution_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2199266e20e9SStefano Zampini   ierr = VecScatterEnd(pcis->global_to_D,work,mat_ctx->temp_solution_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2200fb223d50SStefano Zampini   /* scale rhs since it should be unassembled */
2201fb223d50SStefano Zampini   /* TODO use counter scaling? (also below) */
2202266e20e9SStefano Zampini   ierr = VecScatterBegin(pcis->global_to_B,work,mat_ctx->temp_solution_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2203266e20e9SStefano Zampini   ierr = VecScatterEnd(pcis->global_to_B,work,mat_ctx->temp_solution_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2204674ae819SStefano Zampini   /* Apply partition of unity */
22053425bc38SStefano Zampini   ierr = VecPointwiseMult(mat_ctx->temp_solution_B,pcis->D,mat_ctx->temp_solution_B);CHKERRQ(ierr);
2206266e20e9SStefano Zampini   /* ierr = PCBDDCScalingRestriction(mat_ctx->pc,work,mat_ctx->temp_solution_B);CHKERRQ(ierr); */
22078eeda7d8SStefano Zampini   if (!pcbddc->switch_static) {
22083425bc38SStefano Zampini     /* compute partially subassembled Schur complement right-hand side */
22093425bc38SStefano Zampini     ierr = KSPSolve(pcbddc->ksp_D,mat_ctx->temp_solution_D,pcis->vec1_D);CHKERRQ(ierr);
22103425bc38SStefano Zampini     ierr = MatMult(pcis->A_BI,pcis->vec1_D,pcis->vec1_B);CHKERRQ(ierr);
22113425bc38SStefano Zampini     ierr = VecAXPY(mat_ctx->temp_solution_B,-1.0,pcis->vec1_B);CHKERRQ(ierr);
2212266e20e9SStefano Zampini     ierr = VecSet(work,0.0);CHKERRQ(ierr);
2213266e20e9SStefano Zampini     ierr = VecScatterBegin(pcis->global_to_B,mat_ctx->temp_solution_B,work,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
2214266e20e9SStefano Zampini     ierr = VecScatterEnd(pcis->global_to_B,mat_ctx->temp_solution_B,work,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
2215266e20e9SStefano Zampini     /* ierr = PCBDDCScalingRestriction(mat_ctx->pc,work,mat_ctx->temp_solution_B);CHKERRQ(ierr); */
2216266e20e9SStefano Zampini     ierr = VecScatterBegin(pcis->global_to_B,work,mat_ctx->temp_solution_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2217266e20e9SStefano Zampini     ierr = VecScatterEnd(pcis->global_to_B,work,mat_ctx->temp_solution_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
22183425bc38SStefano Zampini     ierr = VecPointwiseMult(mat_ctx->temp_solution_B,pcis->D,mat_ctx->temp_solution_B);CHKERRQ(ierr);
22193425bc38SStefano Zampini   }
22203425bc38SStefano Zampini   /* BDDC rhs */
22213425bc38SStefano Zampini   ierr = VecCopy(mat_ctx->temp_solution_B,pcis->vec1_B);CHKERRQ(ierr);
22228eeda7d8SStefano Zampini   if (pcbddc->switch_static) {
22233425bc38SStefano Zampini     ierr = VecCopy(mat_ctx->temp_solution_D,pcis->vec1_D);CHKERRQ(ierr);
22243425bc38SStefano Zampini   }
2225fc17d649SStefano Zampini   ierr = PetscMemzero(pcbddc->benign_p0,pcbddc->benign_n*sizeof(PetscScalar));CHKERRQ(ierr);
22263425bc38SStefano Zampini   /* apply BDDC */
2227dc359a40SStefano Zampini   ierr = PCBDDCApplyInterfacePreconditioner(mat_ctx->pc,PETSC_FALSE);CHKERRQ(ierr);
2228266e20e9SStefano Zampini   ierr = PetscMemzero(pcbddc->benign_p0,pcbddc->benign_n*sizeof(PetscScalar));CHKERRQ(ierr);
22293425bc38SStefano Zampini   /* Application of B_delta and assembling of rhs for fetidp fluxes */
22303425bc38SStefano Zampini   ierr = VecSet(fetidp_flux_rhs,0.0);CHKERRQ(ierr);
22313425bc38SStefano Zampini   ierr = MatMult(mat_ctx->B_delta,pcis->vec1_B,mat_ctx->lambda_local);CHKERRQ(ierr);
22323425bc38SStefano Zampini   ierr = VecScatterBegin(mat_ctx->l2g_lambda,mat_ctx->lambda_local,fetidp_flux_rhs,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
22333425bc38SStefano Zampini   ierr = VecScatterEnd(mat_ctx->l2g_lambda,mat_ctx->lambda_local,fetidp_flux_rhs,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
22343425bc38SStefano Zampini   PetscFunctionReturn(0);
22353425bc38SStefano Zampini }
22361e6b0712SBarry Smith 
22373425bc38SStefano Zampini #undef __FUNCT__
22383425bc38SStefano Zampini #define __FUNCT__ "PCBDDCMatFETIDPGetRHS"
22393425bc38SStefano Zampini /*@
22400f202f7eSStefano Zampini  PCBDDCMatFETIDPGetRHS - Compute the right-hand side for FETI-DP linear system using the physical right-hand side
22413425bc38SStefano Zampini 
22423425bc38SStefano Zampini    Collective
22433425bc38SStefano Zampini 
22443425bc38SStefano Zampini    Input Parameters:
22450f202f7eSStefano Zampini +  fetidp_mat      - the FETI-DP matrix object obtained by a call to PCBDDCCreateFETIDPOperators
22460f202f7eSStefano Zampini -  standard_rhs    - the right-hand side of the original linear system
22473425bc38SStefano Zampini 
22483425bc38SStefano Zampini    Output Parameters:
22490f202f7eSStefano Zampini .  fetidp_flux_rhs - the right-hand side for the FETI-DP linear system
22503425bc38SStefano Zampini 
22513425bc38SStefano Zampini    Level: developer
22523425bc38SStefano Zampini 
22533425bc38SStefano Zampini    Notes:
22543425bc38SStefano Zampini 
22550f202f7eSStefano Zampini .seealso: PCBDDC, PCBDDCCreateFETIDPOperators, PCBDDCMatFETIDPGetSolution
22563425bc38SStefano Zampini @*/
22573425bc38SStefano Zampini PetscErrorCode PCBDDCMatFETIDPGetRHS(Mat fetidp_mat, Vec standard_rhs, Vec fetidp_flux_rhs)
22583425bc38SStefano Zampini {
2259674ae819SStefano Zampini   FETIDPMat_ctx  mat_ctx;
22603425bc38SStefano Zampini   PetscErrorCode ierr;
22613425bc38SStefano Zampini 
22623425bc38SStefano Zampini   PetscFunctionBegin;
2263266e20e9SStefano Zampini   PetscValidHeaderSpecific(fetidp_mat,MAT_CLASSID,1);
2264266e20e9SStefano Zampini   PetscValidHeaderSpecific(standard_rhs,VEC_CLASSID,2);
2265266e20e9SStefano Zampini   PetscValidHeaderSpecific(fetidp_flux_rhs,VEC_CLASSID,3);
22663425bc38SStefano Zampini   ierr = MatShellGetContext(fetidp_mat,&mat_ctx);CHKERRQ(ierr);
2267163d334eSBarry Smith   ierr = PetscUseMethod(mat_ctx->pc,"PCBDDCMatFETIDPGetRHS_C",(Mat,Vec,Vec),(fetidp_mat,standard_rhs,fetidp_flux_rhs));CHKERRQ(ierr);
22683425bc38SStefano Zampini   PetscFunctionReturn(0);
22693425bc38SStefano Zampini }
22701e6b0712SBarry Smith 
22713425bc38SStefano Zampini #undef __FUNCT__
22723425bc38SStefano Zampini #define __FUNCT__ "PCBDDCMatFETIDPGetSolution_BDDC"
22733425bc38SStefano Zampini static PetscErrorCode PCBDDCMatFETIDPGetSolution_BDDC(Mat fetidp_mat, Vec fetidp_flux_sol, Vec standard_sol)
22743425bc38SStefano Zampini {
2275674ae819SStefano Zampini   FETIDPMat_ctx  mat_ctx;
22763425bc38SStefano Zampini   PC_IS*         pcis;
22773425bc38SStefano Zampini   PC_BDDC*       pcbddc;
22783425bc38SStefano Zampini   PetscErrorCode ierr;
22793425bc38SStefano Zampini 
22803425bc38SStefano Zampini   PetscFunctionBegin;
22813425bc38SStefano Zampini   ierr = MatShellGetContext(fetidp_mat,&mat_ctx);CHKERRQ(ierr);
22823425bc38SStefano Zampini   pcis = (PC_IS*)mat_ctx->pc->data;
22833425bc38SStefano Zampini   pcbddc = (PC_BDDC*)mat_ctx->pc->data;
22843425bc38SStefano Zampini 
22853425bc38SStefano Zampini   /* apply B_delta^T */
22863425bc38SStefano Zampini   ierr = VecScatterBegin(mat_ctx->l2g_lambda,fetidp_flux_sol,mat_ctx->lambda_local,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
22873425bc38SStefano Zampini   ierr = VecScatterEnd(mat_ctx->l2g_lambda,fetidp_flux_sol,mat_ctx->lambda_local,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
22883425bc38SStefano Zampini   ierr = MatMultTranspose(mat_ctx->B_delta,mat_ctx->lambda_local,pcis->vec1_B);CHKERRQ(ierr);
22893425bc38SStefano Zampini   /* compute rhs for BDDC application */
22903425bc38SStefano Zampini   ierr = VecAYPX(pcis->vec1_B,-1.0,mat_ctx->temp_solution_B);CHKERRQ(ierr);
22918eeda7d8SStefano Zampini   if (pcbddc->switch_static) {
22923425bc38SStefano Zampini     ierr = VecCopy(mat_ctx->temp_solution_D,pcis->vec1_D);CHKERRQ(ierr);
22933425bc38SStefano Zampini   }
2294fc17d649SStefano Zampini   ierr = PetscMemzero(pcbddc->benign_p0,pcbddc->benign_n*sizeof(PetscScalar));CHKERRQ(ierr);
22953425bc38SStefano Zampini   /* apply BDDC */
2296dc359a40SStefano Zampini   ierr = PCBDDCApplyInterfacePreconditioner(mat_ctx->pc,PETSC_FALSE);CHKERRQ(ierr);
22973425bc38SStefano Zampini   /* put values into standard global vector */
22983425bc38SStefano Zampini   ierr = VecScatterBegin(pcis->global_to_B,pcis->vec1_B,standard_sol,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
22993425bc38SStefano Zampini   ierr = VecScatterEnd(pcis->global_to_B,pcis->vec1_B,standard_sol,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
23008eeda7d8SStefano Zampini   if (!pcbddc->switch_static) {
23013425bc38SStefano Zampini     /* compute values into the interior if solved for the partially subassembled Schur complement */
23023425bc38SStefano Zampini     ierr = MatMult(pcis->A_IB,pcis->vec1_B,pcis->vec1_D);CHKERRQ(ierr);
230300f6b531SStefano Zampini     ierr = VecAYPX(pcis->vec1_D,-1.0,mat_ctx->temp_solution_D);CHKERRQ(ierr);
230400f6b531SStefano Zampini     ierr = KSPSolve(pcbddc->ksp_D,pcis->vec1_D,pcis->vec1_D);CHKERRQ(ierr);
23053425bc38SStefano Zampini   }
23063425bc38SStefano Zampini   ierr = VecScatterBegin(pcis->global_to_D,pcis->vec1_D,standard_sol,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
23073425bc38SStefano Zampini   ierr = VecScatterEnd(pcis->global_to_D,pcis->vec1_D,standard_sol,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
2308266e20e9SStefano Zampini   /* add p0 solution to final solution */
2309266e20e9SStefano Zampini   ierr = PCBDDCBenignGetOrSetP0(mat_ctx->pc,standard_sol,PETSC_FALSE);CHKERRQ(ierr);
2310fc17d649SStefano Zampini   if (pcbddc->ChangeOfBasisMatrix) {
2311fc17d649SStefano Zampini     Vec v2;
2312fc17d649SStefano Zampini     ierr = VecDuplicate(standard_sol,&v2);CHKERRQ(ierr);
2313fc17d649SStefano Zampini     ierr = MatMult(pcbddc->ChangeOfBasisMatrix,standard_sol,v2);CHKERRQ(ierr);
2314fc17d649SStefano Zampini     ierr = VecCopy(v2,standard_sol);CHKERRQ(ierr);
2315fc17d649SStefano Zampini     ierr = VecDestroy(&v2);CHKERRQ(ierr);
2316fc17d649SStefano Zampini   }
23173308cffdSStefano Zampini   ierr = PCPostSolve_BDDC(mat_ctx->pc,NULL,NULL,standard_sol);CHKERRQ(ierr);
23183425bc38SStefano Zampini   PetscFunctionReturn(0);
23193425bc38SStefano Zampini }
23201e6b0712SBarry Smith 
23213425bc38SStefano Zampini #undef __FUNCT__
23223425bc38SStefano Zampini #define __FUNCT__ "PCBDDCMatFETIDPGetSolution"
23233425bc38SStefano Zampini /*@
23240f202f7eSStefano Zampini  PCBDDCMatFETIDPGetSolution - Compute the physical solution using the solution of the FETI-DP linear system
23253425bc38SStefano Zampini 
23263425bc38SStefano Zampini    Collective
23273425bc38SStefano Zampini 
23283425bc38SStefano Zampini    Input Parameters:
23290f202f7eSStefano Zampini +  fetidp_mat      - the FETI-DP matrix obtained by a call to PCBDDCCreateFETIDPOperators
23300f202f7eSStefano Zampini -  fetidp_flux_sol - the solution of the FETI-DP linear system
23313425bc38SStefano Zampini 
23323425bc38SStefano Zampini    Output Parameters:
23330f202f7eSStefano Zampini .  standard_sol    - the solution defined on the physical domain
23343425bc38SStefano Zampini 
23353425bc38SStefano Zampini    Level: developer
23363425bc38SStefano Zampini 
23373425bc38SStefano Zampini    Notes:
23383425bc38SStefano Zampini 
23390f202f7eSStefano Zampini .seealso: PCBDDC, PCBDDCCreateFETIDPOperators, PCBDDCMatFETIDPGetRHS
23403425bc38SStefano Zampini @*/
23413425bc38SStefano Zampini PetscErrorCode PCBDDCMatFETIDPGetSolution(Mat fetidp_mat, Vec fetidp_flux_sol, Vec standard_sol)
23423425bc38SStefano Zampini {
2343674ae819SStefano Zampini   FETIDPMat_ctx  mat_ctx;
23443425bc38SStefano Zampini   PetscErrorCode ierr;
23453425bc38SStefano Zampini 
23463425bc38SStefano Zampini   PetscFunctionBegin;
2347266e20e9SStefano Zampini   PetscValidHeaderSpecific(fetidp_mat,MAT_CLASSID,1);
2348266e20e9SStefano Zampini   PetscValidHeaderSpecific(fetidp_flux_sol,VEC_CLASSID,2);
2349266e20e9SStefano Zampini   PetscValidHeaderSpecific(standard_sol,VEC_CLASSID,3);
23503425bc38SStefano Zampini   ierr = MatShellGetContext(fetidp_mat,&mat_ctx);CHKERRQ(ierr);
2351163d334eSBarry Smith   ierr = PetscUseMethod(mat_ctx->pc,"PCBDDCMatFETIDPGetSolution_C",(Mat,Vec,Vec),(fetidp_mat,fetidp_flux_sol,standard_sol));CHKERRQ(ierr);
23523425bc38SStefano Zampini   PetscFunctionReturn(0);
23533425bc38SStefano Zampini }
23541e6b0712SBarry Smith 
2355f23aa3ddSBarry Smith extern PetscErrorCode FETIDPMatMult(Mat,Vec,Vec);
2356edf7251bSStefano Zampini extern PetscErrorCode FETIDPMatMultTranspose(Mat,Vec,Vec);
2357f23aa3ddSBarry Smith extern PetscErrorCode PCBDDCDestroyFETIDPMat(Mat);
2358f23aa3ddSBarry Smith extern PetscErrorCode FETIDPPCApply(PC,Vec,Vec);
2359edf7251bSStefano Zampini extern PetscErrorCode FETIDPPCApplyTranspose(PC,Vec,Vec);
2360f23aa3ddSBarry Smith extern PetscErrorCode PCBDDCDestroyFETIDPPC(PC);
2361674ae819SStefano Zampini 
23623425bc38SStefano Zampini #undef __FUNCT__
23633425bc38SStefano Zampini #define __FUNCT__ "PCBDDCCreateFETIDPOperators_BDDC"
23641720468bSStefano Zampini static PetscErrorCode PCBDDCCreateFETIDPOperators_BDDC(PC pc, PetscBool fully_redundant, Mat *fetidp_mat, PC *fetidp_pc)
23653425bc38SStefano Zampini {
2366674ae819SStefano Zampini 
2367674ae819SStefano Zampini   FETIDPMat_ctx  fetidpmat_ctx;
23683425bc38SStefano Zampini   Mat            newmat;
2369674ae819SStefano Zampini   FETIDPPC_ctx   fetidppc_ctx;
23703425bc38SStefano Zampini   PC             newpc;
2371ce94432eSBarry Smith   MPI_Comm       comm;
23723425bc38SStefano Zampini   PetscErrorCode ierr;
23733425bc38SStefano Zampini 
23743425bc38SStefano Zampini   PetscFunctionBegin;
2375ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)pc,&comm);CHKERRQ(ierr);
23763425bc38SStefano Zampini   /* FETIDP linear matrix */
23773425bc38SStefano Zampini   ierr = PCBDDCCreateFETIDPMatContext(pc,&fetidpmat_ctx);CHKERRQ(ierr);
23781720468bSStefano Zampini   fetidpmat_ctx->fully_redundant = fully_redundant;
23793425bc38SStefano Zampini   ierr = PCBDDCSetupFETIDPMatContext(fetidpmat_ctx);CHKERRQ(ierr);
23803425bc38SStefano Zampini   ierr = MatCreateShell(comm,PETSC_DECIDE,PETSC_DECIDE,fetidpmat_ctx->n_lambda,fetidpmat_ctx->n_lambda,fetidpmat_ctx,&newmat);CHKERRQ(ierr);
23813425bc38SStefano Zampini   ierr = MatShellSetOperation(newmat,MATOP_MULT,(void (*)(void))FETIDPMatMult);CHKERRQ(ierr);
2382edf7251bSStefano Zampini   ierr = MatShellSetOperation(newmat,MATOP_MULT_TRANSPOSE,(void (*)(void))FETIDPMatMultTranspose);CHKERRQ(ierr);
23833425bc38SStefano Zampini   ierr = MatShellSetOperation(newmat,MATOP_DESTROY,(void (*)(void))PCBDDCDestroyFETIDPMat);CHKERRQ(ierr);
23843425bc38SStefano Zampini   ierr = MatSetUp(newmat);CHKERRQ(ierr);
23853425bc38SStefano Zampini   /* FETIDP preconditioner */
23863425bc38SStefano Zampini   ierr = PCBDDCCreateFETIDPPCContext(pc,&fetidppc_ctx);CHKERRQ(ierr);
23873425bc38SStefano Zampini   ierr = PCBDDCSetupFETIDPPCContext(newmat,fetidppc_ctx);CHKERRQ(ierr);
23883425bc38SStefano Zampini   ierr = PCCreate(comm,&newpc);CHKERRQ(ierr);
23893425bc38SStefano Zampini   ierr = PCSetType(newpc,PCSHELL);CHKERRQ(ierr);
23903425bc38SStefano Zampini   ierr = PCShellSetContext(newpc,fetidppc_ctx);CHKERRQ(ierr);
23913425bc38SStefano Zampini   ierr = PCShellSetApply(newpc,FETIDPPCApply);CHKERRQ(ierr);
2392edf7251bSStefano Zampini   ierr = PCShellSetApplyTranspose(newpc,FETIDPPCApplyTranspose);CHKERRQ(ierr);
23933425bc38SStefano Zampini   ierr = PCShellSetDestroy(newpc,PCBDDCDestroyFETIDPPC);CHKERRQ(ierr);
239423ee1639SBarry Smith   ierr = PCSetOperators(newpc,newmat,newmat);CHKERRQ(ierr);
23953425bc38SStefano Zampini   ierr = PCSetUp(newpc);CHKERRQ(ierr);
23963425bc38SStefano Zampini   /* return pointers for objects created */
23973425bc38SStefano Zampini   *fetidp_mat=newmat;
23983425bc38SStefano Zampini   *fetidp_pc=newpc;
23993425bc38SStefano Zampini   PetscFunctionReturn(0);
24003425bc38SStefano Zampini }
24011e6b0712SBarry Smith 
24023425bc38SStefano Zampini #undef __FUNCT__
24033425bc38SStefano Zampini #define __FUNCT__ "PCBDDCCreateFETIDPOperators"
24043425bc38SStefano Zampini /*@
24050f202f7eSStefano Zampini  PCBDDCCreateFETIDPOperators - Create FETI-DP operators
24063425bc38SStefano Zampini 
24073425bc38SStefano Zampini    Collective
24083425bc38SStefano Zampini 
24093425bc38SStefano Zampini    Input Parameters:
24101720468bSStefano Zampini +  pc - the BDDC preconditioning context (setup should have been called before)
24111720468bSStefano Zampini -  fully_redundant - true for a fully redundant set of Lagrange multipliers
241228509bceSStefano Zampini 
241328509bceSStefano Zampini    Output Parameters:
24140f202f7eSStefano Zampini +  fetidp_mat - shell FETI-DP matrix object
24150f202f7eSStefano Zampini -  fetidp_pc  - shell Dirichlet preconditioner for FETI-DP matrix
241628509bceSStefano Zampini 
24173425bc38SStefano Zampini    Level: developer
24183425bc38SStefano Zampini 
24193425bc38SStefano Zampini    Notes:
24200f202f7eSStefano Zampini      Currently the only operations provided for FETI-DP matrix are MatMult and MatMultTranspose
24213425bc38SStefano Zampini 
24220f202f7eSStefano Zampini .seealso: PCBDDC, PCBDDCMatFETIDPGetRHS, PCBDDCMatFETIDPGetSolution
24233425bc38SStefano Zampini @*/
24241720468bSStefano Zampini PetscErrorCode PCBDDCCreateFETIDPOperators(PC pc, PetscBool fully_redundant, Mat *fetidp_mat, PC *fetidp_pc)
24253425bc38SStefano Zampini {
24263425bc38SStefano Zampini   PetscErrorCode ierr;
24273425bc38SStefano Zampini 
24283425bc38SStefano Zampini   PetscFunctionBegin;
24293425bc38SStefano Zampini   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
24303425bc38SStefano Zampini   if (pc->setupcalled) {
24311720468bSStefano Zampini     ierr = PetscUseMethod(pc,"PCBDDCCreateFETIDPOperators_C",(PC,PetscBool,Mat*,PC*),(pc,fully_redundant,fetidp_mat,fetidp_pc));CHKERRQ(ierr);
2432f23aa3ddSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"You must call PCSetup_BDDC() first \n");
24333425bc38SStefano Zampini   PetscFunctionReturn(0);
24343425bc38SStefano Zampini }
24350c7d97c5SJed Brown /* -------------------------------------------------------------------------- */
2436da1bb401SStefano Zampini /*MC
2437da1bb401SStefano Zampini    PCBDDC - Balancing Domain Decomposition by Constraints.
24380c7d97c5SJed Brown 
243928509bceSStefano Zampini    An implementation of the BDDC preconditioner based on
244028509bceSStefano Zampini 
244128509bceSStefano Zampini .vb
244228509bceSStefano Zampini    [1] C. R. Dohrmann. "An approximate BDDC preconditioner", Numerical Linear Algebra with Applications Volume 14, Issue 2, pages 149-168, March 2007
244328509bceSStefano Zampini    [2] A. Klawonn and O. B. Widlund. "Dual-Primal FETI Methods for Linear Elasticity", http://cs.nyu.edu/csweb/Research/TechReports/TR2004-855/TR2004-855.pdf
244428509bceSStefano Zampini    [3] J. Mandel, B. Sousedik, C. R. Dohrmann. "Multispace and Multilevel BDDC", http://arxiv.org/abs/0712.3977
24450f202f7eSStefano Zampini    [4] C. Pechstein and C. R. Dohrmann. "Modern domain decomposition methods BDDC, deluxe scaling, and an algebraic approach", Seminar talk, Linz, December 2013, http://people.ricam.oeaw.ac.at/c.pechstein/pechstein-bddc2013.pdf
244628509bceSStefano Zampini .ve
244728509bceSStefano Zampini 
244828509bceSStefano Zampini    The matrix to be preconditioned (Pmat) must be of type MATIS.
244928509bceSStefano Zampini 
24500f202f7eSStefano Zampini    Currently works with MATIS matrices with local matrices of type MATSEQAIJ, MATSEQBAIJ or MATSEQSBAIJ, either with real or complex numbers.
245128509bceSStefano Zampini 
245228509bceSStefano Zampini    It also works with unsymmetric and indefinite problems.
245328509bceSStefano Zampini 
2454b6fdb6dfSStefano Zampini    Unlike 'conventional' interface preconditioners, PCBDDC iterates over all degrees of freedom, not just those on the interface. This allows the use of approximate solvers on the subdomains.
2455b6fdb6dfSStefano Zampini 
2456c7017625SStefano Zampini    Approximate local solvers are automatically adapted (see [1]) if the user has attached a nullspace object to the subdomain matrices, and informed BDDC of using approximate solvers (via the command line).
245728509bceSStefano Zampini 
24580f202f7eSStefano Zampini    Boundary nodes are split in vertices, edges and faces classes using information from the local to global mapping of dofs and the local connectivity graph of nodes. The latter can be customized by using PCBDDCSetLocalAdjacencyGraph()
245930368db7SStefano Zampini    Additional information on dofs can be provided by using PCBDDCSetDofsSplitting(), PCBDDCSetDirichletBoundaries(), PCBDDCSetNeumannBoundaries(), and PCBDDCSetPrimalVerticesIS() and their local counterparts.
246028509bceSStefano Zampini 
24610f202f7eSStefano Zampini    Constraints can be customized by attaching a MatNullSpace object to the MATIS matrix via MatSetNearNullSpace(). Non-singular modes are retained via SVD.
246228509bceSStefano Zampini 
24630f202f7eSStefano Zampini    Change of basis is performed similarly to [2] when requested. When more than one constraint is present on a single connected component (i.e. an edge or a face), a robust method based on local QR factorizations is used.
24640f202f7eSStefano Zampini    User defined change of basis can be passed to PCBDDC by using PCBDDCSetChangeOfBasisMat()
246528509bceSStefano Zampini 
24660f202f7eSStefano Zampini    The PETSc implementation also supports multilevel BDDC [3]. Coarse grids are partitioned using a MatPartitioning object.
246728509bceSStefano Zampini 
2468df4d28bfSStefano Zampini    Adaptive selection of primal constraints [4] is supported for SPD systems with high-contrast in the coefficients if MUMPS or MKL_PARDISO are present. Future versions of the code will also consider using PASTIX.
246928509bceSStefano Zampini 
24700f202f7eSStefano Zampini    An experimental interface to the FETI-DP method is available. FETI-DP operators could be created using PCBDDCCreateFETIDPOperators(). A stand-alone class for the FETI-DP method will be provided in the next releases.
24710f202f7eSStefano Zampini    Deluxe scaling is not supported yet for FETI-DP.
24720f202f7eSStefano Zampini 
24730f202f7eSStefano Zampini    Options Database Keys (some of them, run with -h for a complete list):
24740f202f7eSStefano Zampini 
24750f202f7eSStefano Zampini .    -pc_bddc_use_vertices <true> - use or not vertices in primal space
24760f202f7eSStefano Zampini .    -pc_bddc_use_edges <true> - use or not edges in primal space
24770f202f7eSStefano Zampini .    -pc_bddc_use_faces <false> - use or not faces in primal space
24780f202f7eSStefano Zampini .    -pc_bddc_symmetric <true> - symmetric computation of primal basis functions. Specify false for unsymmetric problems
24790f202f7eSStefano Zampini .    -pc_bddc_use_change_of_basis <false> - use change of basis approach (on edges only)
24800f202f7eSStefano Zampini .    -pc_bddc_use_change_on_faces <false> - use change of basis approach on faces if change of basis has been requested
24810f202f7eSStefano Zampini .    -pc_bddc_switch_static <false> - switches from M_2 (default) to M_3 operator (see reference article [1])
248228509bceSStefano Zampini .    -pc_bddc_levels <0> - maximum number of levels for multilevel
24830f202f7eSStefano Zampini .    -pc_bddc_coarsening_ratio <8> - number of subdomains which will be aggregated together at the coarser level (e.g. H/h ratio at the coarser level, significative only in the multilevel case)
24840f202f7eSStefano Zampini .    -pc_bddc_redistribute <0> - size of a subset of processors where the coarse problem will be remapped (the value is ignored if not at the coarsest level)
24850f202f7eSStefano Zampini .    -pc_bddc_use_deluxe_scaling <false> - use deluxe scaling
24860f202f7eSStefano Zampini .    -pc_bddc_schur_layers <-1> - select the economic version of deluxe scaling by specifying the number of layers (-1 corresponds to the original deluxe scaling)
2487df4d28bfSStefano Zampini .    -pc_bddc_adaptive_threshold <0.0> - when a value greater than one is specified, adaptive selection of constraints is performed on edges and faces (requires deluxe scaling and MUMPS or MKL_PARDISO installed)
248828509bceSStefano Zampini -    -pc_bddc_check_level <0> - set verbosity level of debugging output
248928509bceSStefano Zampini 
249028509bceSStefano Zampini    Options for Dirichlet, Neumann or coarse solver can be set with
249128509bceSStefano Zampini .vb
249228509bceSStefano Zampini       -pc_bddc_dirichlet_
249328509bceSStefano Zampini       -pc_bddc_neumann_
249428509bceSStefano Zampini       -pc_bddc_coarse_
249528509bceSStefano Zampini .ve
24960f202f7eSStefano Zampini    e.g -pc_bddc_dirichlet_ksp_type richardson -pc_bddc_dirichlet_pc_type gamg. PCBDDC uses by default KPSPREONLY and PCLU.
249728509bceSStefano Zampini 
24980f202f7eSStefano Zampini    When using a multilevel approach, solvers' options at the N-th level (N > 1) can be specified as
249928509bceSStefano Zampini .vb
2500312be037SStefano Zampini       -pc_bddc_dirichlet_lN_
2501312be037SStefano Zampini       -pc_bddc_neumann_lN_
2502312be037SStefano Zampini       -pc_bddc_coarse_lN_
250328509bceSStefano Zampini .ve
25040f202f7eSStefano Zampini    Note that level number ranges from the finest (0) to the coarsest (N).
25050f202f7eSStefano Zampini    In order to specify options for the BDDC operators at the coarser levels (and not for the solvers), prepend -pc_bddc_coarse_ or -pc_bddc_coarse_l to the option, e.g.
25060f202f7eSStefano Zampini .vb
25070f202f7eSStefano Zampini      -pc_bddc_coarse_pc_bddc_adaptive_threshold 5 -pc_bddc_coarse_l1_pc_bddc_redistribute 3
25080f202f7eSStefano Zampini .ve
25090f202f7eSStefano Zampini    will use a threshold of 5 for constraints' selection at the first coarse level and will redistribute the coarse problem of the first coarse level on 3 processors
2510da1bb401SStefano Zampini 
2511da1bb401SStefano Zampini    Level: intermediate
2512da1bb401SStefano Zampini 
2513b6fdb6dfSStefano Zampini    Developer notes:
2514da1bb401SStefano Zampini 
2515da1bb401SStefano Zampini    Contributed by Stefano Zampini
2516da1bb401SStefano Zampini 
2517da1bb401SStefano Zampini .seealso:  PCCreate(), PCSetType(), PCType (for list of available types), PC,  MATIS
2518da1bb401SStefano Zampini M*/
2519b2573a8aSBarry Smith 
2520da1bb401SStefano Zampini #undef __FUNCT__
2521da1bb401SStefano Zampini #define __FUNCT__ "PCCreate_BDDC"
25228cc058d9SJed Brown PETSC_EXTERN PetscErrorCode PCCreate_BDDC(PC pc)
2523da1bb401SStefano Zampini {
2524da1bb401SStefano Zampini   PetscErrorCode      ierr;
2525da1bb401SStefano Zampini   PC_BDDC             *pcbddc;
2526da1bb401SStefano Zampini 
2527da1bb401SStefano Zampini   PetscFunctionBegin;
2528da1bb401SStefano Zampini   /* Creates the private data structure for this preconditioner and attach it to the PC object. */
2529b00a9115SJed Brown   ierr      = PetscNewLog(pc,&pcbddc);CHKERRQ(ierr);
2530da1bb401SStefano Zampini   pc->data  = (void*)pcbddc;
2531da1bb401SStefano Zampini 
2532da1bb401SStefano Zampini   /* create PCIS data structure */
2533da1bb401SStefano Zampini   ierr = PCISCreate(pc);CHKERRQ(ierr);
2534da1bb401SStefano Zampini 
253547d04d0dSStefano Zampini   /* BDDC customization */
253608a5cf49SStefano Zampini   pcbddc->use_local_adj       = PETSC_TRUE;
253747d04d0dSStefano Zampini   pcbddc->use_vertices        = PETSC_TRUE;
253847d04d0dSStefano Zampini   pcbddc->use_edges           = PETSC_TRUE;
253947d04d0dSStefano Zampini   pcbddc->use_faces           = PETSC_FALSE;
254047d04d0dSStefano Zampini   pcbddc->use_change_of_basis = PETSC_FALSE;
254147d04d0dSStefano Zampini   pcbddc->use_change_on_faces = PETSC_FALSE;
254247d04d0dSStefano Zampini   pcbddc->switch_static       = PETSC_FALSE;
2543fa434743SStefano Zampini   pcbddc->use_nnsp_true       = PETSC_FALSE;
2544fa434743SStefano Zampini   pcbddc->use_qr_single       = PETSC_FALSE;
25453301b35fSStefano Zampini   pcbddc->symmetric_primal    = PETSC_TRUE;
254606a4e24aSStefano Zampini   pcbddc->benign_saddle_point = PETSC_FALSE;
254727b6a85dSStefano Zampini   pcbddc->benign_have_null    = PETSC_FALSE;
254814f95afaSStefano Zampini   pcbddc->vertex_size         = 1;
254947d04d0dSStefano Zampini   pcbddc->dbg_flag            = 0;
2550b9d89cd5SStefano Zampini   /* private */
2551727cdba6SStefano Zampini   pcbddc->local_primal_size          = 0;
25520e6343abSStefano Zampini   pcbddc->local_primal_size_cc       = 0;
25530e6343abSStefano Zampini   pcbddc->local_primal_ref_node      = 0;
25540e6343abSStefano Zampini   pcbddc->local_primal_ref_mult      = 0;
2555e9189074SStefano Zampini   pcbddc->n_vertices                 = 0;
2556727cdba6SStefano Zampini   pcbddc->primal_indices_local_idxs  = 0;
2557c703fcc7SStefano Zampini   pcbddc->recompute_topography       = PETSC_TRUE;
255868457ee5SStefano Zampini   pcbddc->coarse_size                = -1;
2559f4ddd8eeSStefano Zampini   pcbddc->new_primal_space           = PETSC_FALSE;
2560727cdba6SStefano Zampini   pcbddc->new_primal_space_local     = PETSC_FALSE;
2561f4ddd8eeSStefano Zampini   pcbddc->global_primal_indices      = 0;
2562f4ddd8eeSStefano Zampini   pcbddc->onearnullspace             = 0;
2563f4ddd8eeSStefano Zampini   pcbddc->onearnullvecs_state        = 0;
2564674ae819SStefano Zampini   pcbddc->user_primal_vertices       = 0;
256530368db7SStefano Zampini   pcbddc->user_primal_vertices_local = 0;
25663972b0daSStefano Zampini   pcbddc->temp_solution              = 0;
2567534831adSStefano Zampini   pcbddc->original_rhs               = 0;
2568534831adSStefano Zampini   pcbddc->local_mat                  = 0;
2569534831adSStefano Zampini   pcbddc->ChangeOfBasisMatrix        = 0;
2570b9b85e73SStefano Zampini   pcbddc->user_ChangeOfBasisMatrix   = 0;
2571da1bb401SStefano Zampini   pcbddc->coarse_vec                 = 0;
2572da1bb401SStefano Zampini   pcbddc->coarse_ksp                 = 0;
2573da1bb401SStefano Zampini   pcbddc->coarse_phi_B               = 0;
2574da1bb401SStefano Zampini   pcbddc->coarse_phi_D               = 0;
257515aaf578SStefano Zampini   pcbddc->coarse_psi_B               = 0;
257615aaf578SStefano Zampini   pcbddc->coarse_psi_D               = 0;
2577da1bb401SStefano Zampini   pcbddc->vec1_P                     = 0;
2578da1bb401SStefano Zampini   pcbddc->vec1_R                     = 0;
2579da1bb401SStefano Zampini   pcbddc->vec2_R                     = 0;
2580da1bb401SStefano Zampini   pcbddc->local_auxmat1              = 0;
2581da1bb401SStefano Zampini   pcbddc->local_auxmat2              = 0;
2582da1bb401SStefano Zampini   pcbddc->R_to_B                     = 0;
2583da1bb401SStefano Zampini   pcbddc->R_to_D                     = 0;
2584da1bb401SStefano Zampini   pcbddc->ksp_D                      = 0;
2585da1bb401SStefano Zampini   pcbddc->ksp_R                      = 0;
2586da1bb401SStefano Zampini   pcbddc->NeumannBoundaries          = 0;
2587785d1243SStefano Zampini   pcbddc->NeumannBoundariesLocal     = 0;
2588785d1243SStefano Zampini   pcbddc->DirichletBoundaries        = 0;
2589785d1243SStefano Zampini   pcbddc->DirichletBoundariesLocal   = 0;
259060d44989SStefano Zampini   pcbddc->user_provided_isfordofs    = PETSC_FALSE;
259160d44989SStefano Zampini   pcbddc->n_ISForDofs                = 0;
259263602bcaSStefano Zampini   pcbddc->n_ISForDofsLocal           = 0;
2593da1bb401SStefano Zampini   pcbddc->ISForDofs                  = 0;
259463602bcaSStefano Zampini   pcbddc->ISForDofsLocal             = 0;
2595da1bb401SStefano Zampini   pcbddc->ConstraintMatrix           = 0;
259685c4d303SStefano Zampini   pcbddc->use_exact_dirichlet_trick  = PETSC_TRUE;
25978ae0ca82SStefano Zampini   pcbddc->exact_dirichlet_trick_app  = PETSC_FALSE;
259847d04d0dSStefano Zampini   pcbddc->coarse_loc_to_glob         = 0;
259947d04d0dSStefano Zampini   pcbddc->coarsening_ratio           = 8;
2600b0c7d250SStefano Zampini   pcbddc->coarse_adj_red             = 0;
26014fad6a16SStefano Zampini   pcbddc->current_level              = 0;
26022b510759SStefano Zampini   pcbddc->max_levels                 = 0;
2603323d395dSStefano Zampini   pcbddc->use_coarse_estimates       = PETSC_FALSE;
260457de7509SStefano Zampini   pcbddc->coarse_eqs_per_proc        = 1;
2605f3bde8b3SStefano Zampini   pcbddc->coarse_subassembling       = 0;
26064f1b2e48SStefano Zampini   pcbddc->detect_disconnected        = PETSC_FALSE;
26074f1b2e48SStefano Zampini   pcbddc->n_local_subs               = 0;
26084f1b2e48SStefano Zampini   pcbddc->local_subs                 = NULL;
260981d14e9dSStefano Zampini 
261081d14e9dSStefano Zampini   /* benign subspace trick */
261181d14e9dSStefano Zampini   pcbddc->benign_change              = 0;
261227b6a85dSStefano Zampini   pcbddc->benign_compute_correction  = PETSC_TRUE;
26130369aaf7SStefano Zampini   pcbddc->benign_vec                 = 0;
26140369aaf7SStefano Zampini   pcbddc->benign_original_mat        = 0;
26150369aaf7SStefano Zampini   pcbddc->benign_sf                  = 0;
26164f1b2e48SStefano Zampini   pcbddc->benign_B0                  = 0;
26174f1b2e48SStefano Zampini   pcbddc->benign_n                   = 0;
26184f1b2e48SStefano Zampini   pcbddc->benign_p0                  = NULL;
26194f1b2e48SStefano Zampini   pcbddc->benign_p0_lidx             = NULL;
26204f1b2e48SStefano Zampini   pcbddc->benign_p0_gidx             = NULL;
2621b0f5fe93SStefano Zampini   pcbddc->benign_null                = PETSC_FALSE;
262281d14e9dSStefano Zampini 
26231e0482f5SStefano Zampini   /* Nedelec */
26241e0482f5SStefano Zampini   pcbddc->nedfield  = -1;
26251e0482f5SStefano Zampini   pcbddc->nedglobal = PETSC_TRUE;
26261e0482f5SStefano Zampini 
2627674ae819SStefano Zampini   /* create local graph structure */
2628674ae819SStefano Zampini   ierr = PCBDDCGraphCreate(&pcbddc->mat_graph);CHKERRQ(ierr);
2629be12c134Sstefano_zampini   pcbddc->graphmaxcount = PETSC_MAX_INT;
2630674ae819SStefano Zampini 
2631674ae819SStefano Zampini   /* scaling */
2632674ae819SStefano Zampini   pcbddc->work_scaling          = 0;
263334a97f8cSStefano Zampini   pcbddc->use_deluxe_scaling    = PETSC_FALSE;
2634b96c3477SStefano Zampini 
2635b334f244SStefano Zampini   /* sub schurs options */
2636b96c3477SStefano Zampini   pcbddc->sub_schurs_rebuild     = PETSC_FALSE;
2637b96c3477SStefano Zampini   pcbddc->sub_schurs_layers      = -1;
2638b96c3477SStefano Zampini   pcbddc->sub_schurs_use_useradj = PETSC_FALSE;
2639b96c3477SStefano Zampini 
2640b96c3477SStefano Zampini   pcbddc->computed_rowadj = PETSC_FALSE;
2641da1bb401SStefano Zampini 
2642b7eb3628SStefano Zampini   /* adaptivity */
2643f6f667cfSStefano Zampini   pcbddc->adaptive_threshold      = 0.0;
264408122e43SStefano Zampini   pcbddc->adaptive_nmax           = 0;
2645f6f667cfSStefano Zampini   pcbddc->adaptive_nmin           = 0;
2646b7eb3628SStefano Zampini 
2647da1bb401SStefano Zampini   /* function pointers */
2648da1bb401SStefano Zampini   pc->ops->apply               = PCApply_BDDC;
264993bd9ae7SStefano Zampini   pc->ops->applytranspose      = PCApplyTranspose_BDDC;
2650da1bb401SStefano Zampini   pc->ops->setup               = PCSetUp_BDDC;
2651da1bb401SStefano Zampini   pc->ops->destroy             = PCDestroy_BDDC;
2652da1bb401SStefano Zampini   pc->ops->setfromoptions      = PCSetFromOptions_BDDC;
26536b78500eSPatrick Sanan   pc->ops->view                = PCView_BDDC;
2654da1bb401SStefano Zampini   pc->ops->applyrichardson     = 0;
2655da1bb401SStefano Zampini   pc->ops->applysymmetricleft  = 0;
2656da1bb401SStefano Zampini   pc->ops->applysymmetricright = 0;
2657534831adSStefano Zampini   pc->ops->presolve            = PCPreSolve_BDDC;
2658534831adSStefano Zampini   pc->ops->postsolve           = PCPostSolve_BDDC;
2659da1bb401SStefano Zampini 
2660da1bb401SStefano Zampini   /* composing function */
2661a13144ffSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDiscreteGradient_C",PCBDDCSetDiscreteGradient_BDDC);CHKERRQ(ierr);
2662a198735bSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDivergenceMat_C",PCBDDCSetDivergenceMat_BDDC);CHKERRQ(ierr);
2663906d46d4SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetChangeOfBasisMat_C",PCBDDCSetChangeOfBasisMat_BDDC);CHKERRQ(ierr);
2664674ae819SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetPrimalVerticesLocalIS_C",PCBDDCSetPrimalVerticesLocalIS_BDDC);CHKERRQ(ierr);
266530368db7SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetPrimalVerticesIS_C",PCBDDCSetPrimalVerticesIS_BDDC);CHKERRQ(ierr);
2666bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetCoarseningRatio_C",PCBDDCSetCoarseningRatio_BDDC);CHKERRQ(ierr);
26672b510759SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetLevel_C",PCBDDCSetLevel_BDDC);CHKERRQ(ierr);
2668b8ffe317SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetUseExactDirichlet_C",PCBDDCSetUseExactDirichlet_BDDC);CHKERRQ(ierr);
26692b510759SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetLevels_C",PCBDDCSetLevels_BDDC);CHKERRQ(ierr);
2670bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDirichletBoundaries_C",PCBDDCSetDirichletBoundaries_BDDC);CHKERRQ(ierr);
267182ba6b80SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDirichletBoundariesLocal_C",PCBDDCSetDirichletBoundariesLocal_BDDC);CHKERRQ(ierr);
2672bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetNeumannBoundaries_C",PCBDDCSetNeumannBoundaries_BDDC);CHKERRQ(ierr);
267382ba6b80SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetNeumannBoundariesLocal_C",PCBDDCSetNeumannBoundariesLocal_BDDC);CHKERRQ(ierr);
2674bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetDirichletBoundaries_C",PCBDDCGetDirichletBoundaries_BDDC);CHKERRQ(ierr);
267582ba6b80SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetDirichletBoundariesLocal_C",PCBDDCGetDirichletBoundariesLocal_BDDC);CHKERRQ(ierr);
2676bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetNeumannBoundaries_C",PCBDDCGetNeumannBoundaries_BDDC);CHKERRQ(ierr);
267782ba6b80SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetNeumannBoundariesLocal_C",PCBDDCGetNeumannBoundariesLocal_BDDC);CHKERRQ(ierr);
2678bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDofsSplitting_C",PCBDDCSetDofsSplitting_BDDC);CHKERRQ(ierr);
267963602bcaSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDofsSplittingLocal_C",PCBDDCSetDofsSplittingLocal_BDDC);CHKERRQ(ierr);
2680bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetLocalAdjacencyGraph_C",PCBDDCSetLocalAdjacencyGraph_BDDC);CHKERRQ(ierr);
2681bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCCreateFETIDPOperators_C",PCBDDCCreateFETIDPOperators_BDDC);CHKERRQ(ierr);
2682bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCMatFETIDPGetRHS_C",PCBDDCMatFETIDPGetRHS_BDDC);CHKERRQ(ierr);
2683bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCMatFETIDPGetSolution_C",PCBDDCMatFETIDPGetSolution_BDDC);CHKERRQ(ierr);
2684a06fd7f2SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCPreSolveChangeRHS_C",PCPreSolveChangeRHS_BDDC);CHKERRQ(ierr);
2685da1bb401SStefano Zampini   PetscFunctionReturn(0);
2686da1bb401SStefano Zampini }
26873425bc38SStefano Zampini 
2688