impls/bddc/bddc.c

/* TODOLIST

   Solvers
   - Add support for cholesky for coarse solver (similar to local solvers)
   - Propagate ksp prefixes for solvers to mat objects?

   User interface
   - ** DM attached to pc?

   Debugging output
   - * Better management of verbosity levels of debugging output

   Extra
   - *** Is it possible to work with PCBDDCGraph on boundary indices only (less memory consumed)?
   - BDDC with MG framework?

   MATIS related operations contained in BDDC code
   - Provide general case for subassembling

*/

#include <../src/ksp/pc/impls/bddc/bddc.h> /*I "petscpc.h" I*/  /* includes for fortran wrappers */
#include <../src/ksp/pc/impls/bddc/bddcprivate.h>
#include <petscblaslapack.h>

/* temporarily declare it */
PetscErrorCode PCApply_BDDC(PC,Vec,Vec);

/* -------------------------------------------------------------------------- */
#undef __FUNCT__
#define __FUNCT__ "PCSetFromOptions_BDDC"
PetscErrorCode PCSetFromOptions_BDDC(PetscOptionItems *PetscOptionsObject,PC pc)
{
  PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
  PetscErrorCode ierr;

  PetscFunctionBegin;
  ierr = PetscOptionsHead(PetscOptionsObject,"BDDC options");CHKERRQ(ierr);
  /* Verbose debugging */
  ierr = PetscOptionsBool("-pc_bddc_dirichlet_approximate","Inform PCBDDC that we are using approximate Dirichlet solvers","none",pcbddc->NullSpace_corr[0],&pcbddc->NullSpace_corr[0],NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-pc_bddc_dirichlet_approximate_scale","Inform PCBDDC that we need to scale the Dirichlet solve","none",pcbddc->NullSpace_corr[1],&pcbddc->NullSpace_corr[1],NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-pc_bddc_neumann_approximate","Inform PCBDDC that we are using approximate Neumann solvers","none",pcbddc->NullSpace_corr[2],&pcbddc->NullSpace_corr[2],NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-pc_bddc_neumann_approximate_scale","Inform PCBDDC that we need to scale the Neumann solve","none",pcbddc->NullSpace_corr[3],&pcbddc->NullSpace_corr[3],NULL);CHKERRQ(ierr);
  ierr = PetscOptionsInt("-pc_bddc_check_level","Verbose output for PCBDDC (intended for debug)","none",pcbddc->dbg_flag,&pcbddc->dbg_flag,NULL);CHKERRQ(ierr);
  /* Primal space customization */
  ierr = PetscOptionsBool("-pc_bddc_use_local_mat_graph","Use or not adjacency graph of local mat for interface analysis","none",pcbddc->use_local_adj,&pcbddc->use_local_adj,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-pc_bddc_use_vertices","Use or not corner dofs in coarse space","none",pcbddc->use_vertices,&pcbddc->use_vertices,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-pc_bddc_use_edges","Use or not edge constraints in coarse space","none",pcbddc->use_edges,&pcbddc->use_edges,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-pc_bddc_use_faces","Use or not face constraints in coarse space","none",pcbddc->use_faces,&pcbddc->use_faces,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsInt("-pc_bddc_vertex_size","Connected components smaller or equal to vertex size will be considered as primal vertices","none",pcbddc->vertex_size,&pcbddc->vertex_size,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-pc_bddc_use_true_nnsp","Use near null space attached to the matrix without modifications","none",pcbddc->use_nnsp_true,&pcbddc->use_nnsp_true,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-pc_bddc_use_qr_single","Use QR factorization for single constraints on cc (QR is always used when multiple constraints are present)","none",pcbddc->use_qr_single,&pcbddc->use_qr_single,NULL);CHKERRQ(ierr);
  /* Change of basis */
  ierr = PetscOptionsBool("-pc_bddc_use_change_of_basis","Use or not internal change of basis on local edge nodes","none",pcbddc->use_change_of_basis,&pcbddc->use_change_of_basis,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-pc_bddc_use_change_on_faces","Use or not internal change of basis on local face nodes","none",pcbddc->use_change_on_faces,&pcbddc->use_change_on_faces,NULL);CHKERRQ(ierr);
  if (!pcbddc->use_change_of_basis) {
    pcbddc->use_change_on_faces = PETSC_FALSE;
  }
  /* Switch between M_2 (default) and M_3 preconditioners (as defined by C. Dohrmann in the ref. article) */
  ierr = PetscOptionsBool("-pc_bddc_switch_static","Switch on static condensation ops around the interface preconditioner","none",pcbddc->switch_static,&pcbddc->switch_static,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsInt("-pc_bddc_coarse_eqs_per_proc","Number of equations per process for coarse problem redistribution (significant only at the coarsest level)","none",pcbddc->coarse_eqs_per_proc,&pcbddc->coarse_eqs_per_proc,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsInt("-pc_bddc_coarsening_ratio","Set coarsening ratio used in multilevel coarsening","none",pcbddc->coarsening_ratio,&pcbddc->coarsening_ratio,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsInt("-pc_bddc_levels","Set maximum number of levels for multilevel","none",pcbddc->max_levels,&pcbddc->max_levels,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-pc_bddc_use_coarse_estimates","Use estimated eigenvalues for coarse problem","none",pcbddc->use_coarse_estimates,&pcbddc->use_coarse_estimates,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-pc_bddc_use_deluxe_scaling","Use deluxe scaling for BDDC","none",pcbddc->use_deluxe_scaling,&pcbddc->use_deluxe_scaling,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-pc_bddc_schur_rebuild","Whether or not the interface graph for Schur principal minors has to be rebuilt (i.e. define the interface without any adjacency)","none",pcbddc->sub_schurs_rebuild,&pcbddc->sub_schurs_rebuild,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsInt("-pc_bddc_schur_layers","Number of dofs' layers for the computation of principal minors (i.e. -1 uses all dofs)","none",pcbddc->sub_schurs_layers,&pcbddc->sub_schurs_layers,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-pc_bddc_schur_use_useradj","Whether or not the CSR graph specified by the user should be used for computing successive layers (default is to use adj of local mat)","none",pcbddc->sub_schurs_use_useradj,&pcbddc->sub_schurs_use_useradj,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-pc_bddc_schur_exact","Whether or not to use the exact Schur complement instead of the reduced one (which excludes size 1 cc)","none",pcbddc->sub_schurs_exact_schur,&pcbddc->sub_schurs_exact_schur,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-pc_bddc_deluxe_zerorows","Zero rows and columns of deluxe operators associated with primal dofs","none",pcbddc->deluxe_zerorows,&pcbddc->deluxe_zerorows,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-pc_bddc_adaptive_userdefined","Use user-defined constraints (should be attached via MatSetNearNullSpace to pmat) in addition to those adaptively generated","none",pcbddc->adaptive_userdefined,&pcbddc->adaptive_userdefined,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsReal("-pc_bddc_adaptive_threshold","Threshold to be used for adaptive selection of constraints","none",pcbddc->adaptive_threshold,&pcbddc->adaptive_threshold,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsInt("-pc_bddc_adaptive_nmin","Minimum number of constraints per connected components","none",pcbddc->adaptive_nmin,&pcbddc->adaptive_nmin,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsInt("-pc_bddc_adaptive_nmax","Maximum number of constraints per connected components","none",pcbddc->adaptive_nmax,&pcbddc->adaptive_nmax,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-pc_bddc_symmetric","Symmetric computation of primal basis functions","none",pcbddc->symmetric_primal,&pcbddc->symmetric_primal,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsInt("-pc_bddc_coarse_adj","Number of processors where to map the coarse adjacency list","none",pcbddc->coarse_adj_red,&pcbddc->coarse_adj_red,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-pc_bddc_benign_trick","Apply the benign subspace trick to saddle point problems with discontinuous pressures","none",pcbddc->benign_saddle_point,&pcbddc->benign_saddle_point,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-pc_bddc_benign_change","Compute the pressure change of basis explicitly","none",pcbddc->benign_change_explicit,&pcbddc->benign_change_explicit,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-pc_bddc_benign_compute_correction","Compute the benign correction during PreSolve","none",pcbddc->benign_compute_correction,&pcbddc->benign_compute_correction,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-pc_bddc_nonetflux","Automatic computation of no-net-flux quadrature weights","none",pcbddc->compute_nonetflux,&pcbddc->compute_nonetflux,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-pc_bddc_detect_disconnected","Detects disconnected subdomains","none",pcbddc->detect_disconnected,&pcbddc->detect_disconnected,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-pc_bddc_eliminate_dirichlet","Whether or not we want to eliminate dirichlet dofs during presolve","none",pcbddc->eliminate_dirdofs,&pcbddc->eliminate_dirdofs,NULL);CHKERRQ(ierr);
  ierr = PetscOptionsTail();CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

/* -------------------------------------------------------------------------- */
#undef __FUNCT__
#define __FUNCT__ "PCView_BDDC"
static PetscErrorCode PCView_BDDC(PC pc,PetscViewer viewer)
{
  PC_BDDC              *pcbddc = (PC_BDDC*)pc->data;
  PC_IS                *pcis = (PC_IS*)pc->data;
  PetscErrorCode       ierr;
  PetscBool            isascii,isstring;
  PetscSubcomm         subcomm;
  PetscViewer          subviewer;

  PetscFunctionBegin;
  ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&isascii);CHKERRQ(ierr);
  ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSTRING,&isstring);CHKERRQ(ierr);
  /* Nothing printed for the String viewer */
  /* ASCII viewer */
  if (isascii) {
    PetscMPIInt   color,rank,size;
    PetscInt64    loc[6],gsum[5],gmax[5],gmin[5],totbenign;
    PetscScalar   interface_size;
    PetscReal     ratio1=0.,ratio2=0.;
    Vec           counter;

    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use verbose output: %d\n",pcbddc->dbg_flag);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use user-defined CSR: %d\n",!!pcbddc->mat_graph->nvtxs_csr);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use local mat graph: %d\n",pcbddc->use_local_adj);CHKERRQ(ierr);
    if (pcbddc->mat_graph->twodim) {
      ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Connectivity graph topological dimension: 2\n");CHKERRQ(ierr);
    } else {
      ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Connectivity graph topological dimension: 3\n");CHKERRQ(ierr);
    }
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use vertices: %d (vertex size %d)\n",pcbddc->use_vertices,pcbddc->vertex_size);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use edges: %d\n",pcbddc->use_edges);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use faces: %d\n",pcbddc->use_faces);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use true near null space: %d\n",pcbddc->use_nnsp_true);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use QR for single constraints on cc: %d\n",pcbddc->use_qr_single);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use change of basis on local edge nodes: %d\n",pcbddc->use_change_of_basis);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use change of basis on local face nodes: %d\n",pcbddc->use_change_on_faces);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: User defined change of basis matrix: %d\n",!!pcbddc->user_ChangeOfBasisMatrix);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Has change of basis matrix: %d\n",!!pcbddc->ChangeOfBasisMatrix);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Eliminate dirichlet boundary dofs: %d\n",pcbddc->eliminate_dirdofs);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Switch on static condensation ops around the interface preconditioner: %d\n",pcbddc->switch_static);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use exact dirichlet trick: %d\n",pcbddc->use_exact_dirichlet_trick);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Multilevel max levels: %d\n",pcbddc->max_levels);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Multilevel coarsening ratio: %d\n",pcbddc->coarsening_ratio);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use estimated eigs for coarse problem: %d\n",pcbddc->use_coarse_estimates);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use deluxe scaling: %d\n",pcbddc->use_deluxe_scaling);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use deluxe zerorows: %d\n",pcbddc->deluxe_zerorows);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Rebuild interface graph for Schur principal minors: %d\n",pcbddc->sub_schurs_rebuild);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Number of dofs' layers for the computation of principal minors: %d\n",pcbddc->sub_schurs_layers);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Use user CSR graph to compute successive layers: %d\n",pcbddc->sub_schurs_use_useradj);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Adaptive constraint selection threshold (active %d, userdefined %d): %g\n",pcbddc->adaptive_threshold,pcbddc->adaptive_selection,pcbddc->adaptive_userdefined);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Min constraints / connected component: %d\n",pcbddc->adaptive_nmin);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Max constraints / connected component: %d\n",pcbddc->adaptive_nmax);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Invert exact Schur complement for adaptive selection: %d\n",pcbddc->sub_schurs_exact_schur);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Symmetric computation of primal basis functions: %d\n",pcbddc->symmetric_primal);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Num. Procs. to map coarse adjacency list: %d\n",pcbddc->coarse_adj_red);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Coarse eqs per proc (significant at the coarsest level): %d\n",pcbddc->coarse_eqs_per_proc);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Detect disconnected: %d\n",pcbddc->detect_disconnected);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Benign subspace trick: %d (change explicit %d)\n",pcbddc->benign_saddle_point,pcbddc->benign_change_explicit);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Benign subspace trick is active: %d\n",pcbddc->benign_have_null);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Algebraic computation of no-net-flux %d\n",pcbddc->compute_nonetflux);CHKERRQ(ierr);

    /* compute some numbers on the domain decomposition */
    ierr = VecSet(pcis->vec1_B,1.0);CHKERRQ(ierr);
    ierr = MatCreateVecs(pc->pmat,&counter,0);CHKERRQ(ierr);
    ierr = VecSet(counter,0.0);CHKERRQ(ierr);
    ierr = VecScatterBegin(pcis->global_to_B,pcis->vec1_B,counter,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
    ierr = VecScatterEnd(pcis->global_to_B,pcis->vec1_B,counter,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
    ierr = VecSum(counter,&interface_size);CHKERRQ(ierr);
    ierr = VecDestroy(&counter);CHKERRQ(ierr);
    gsum[0] = 1;
    gsum[1] = gsum[2] = gsum[3] = gsum[4] = 0;
    loc[0] = !!pcis->n;
    loc[1] = pcis->n - pcis->n_B;
    loc[2] = pcis->n_B;
    loc[3] = pcbddc->local_primal_size;
    loc[4] = pcis->n;
    loc[5] = pcbddc->benign_n;
    ierr = MPI_Reduce(loc,gsum,5,MPIU_INT64,MPI_SUM,0,PetscObjectComm((PetscObject)pc));CHKERRQ(ierr);
    if (!loc[0]) loc[1] = loc[2] = loc[3] = loc[4] = -1;
    ierr = MPI_Reduce(loc,gmax,5,MPIU_INT64,MPI_MAX,0,PetscObjectComm((PetscObject)pc));CHKERRQ(ierr);
    if (!loc[0]) loc[1] = loc[2] = loc[3] = loc[4] = PETSC_MAX_INT;
    ierr = MPI_Reduce(loc,gmin,5,MPIU_INT64,MPI_MIN,0,PetscObjectComm((PetscObject)pc));CHKERRQ(ierr);
    ierr = MPI_Reduce(&loc[5],&totbenign,1,MPIU_INT64,MPI_SUM,0,PetscObjectComm((PetscObject)pc));CHKERRQ(ierr);
    if (pcbddc->coarse_size) {
      ratio1 = pc->pmat->rmap->N/(1.*pcbddc->coarse_size);
      ratio2 = PetscRealPart(interface_size)/pcbddc->coarse_size;
    }
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: ********************************** STATISTICS AT LEVEL %d **********************************\n",pcbddc->current_level);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Global dofs sizes: all %d interface %d coarse %d\n",pc->pmat->rmap->N,(PetscInt)PetscRealPart(interface_size),pcbddc->coarse_size);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Coarsening ratios: all/coarse %d interface/coarse %d\n",(PetscInt)ratio1,(PetscInt)ratio2);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Active processes : %d\n",(PetscInt)gsum[0]);CHKERRQ(ierr);
    if (pcbddc->benign_have_null) {
      ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Benign subs      : %d\n",(PetscInt)totbenign);CHKERRQ(ierr);
    }
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Dofs type        :\tMIN\tMAX\tMEAN\n",(PetscInt)gmin[1],(PetscInt)gmax[1],(PetscInt)(gsum[1]/gsum[0]));CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Interior  dofs   :\t%d\t%d\t%d\n",(PetscInt)gmin[1],(PetscInt)gmax[1],(PetscInt)(gsum[1]/gsum[0]));CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Interface dofs   :\t%d\t%d\t%d\n",(PetscInt)gmin[2],(PetscInt)gmax[2],(PetscInt)(gsum[2]/gsum[0]));CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Primal    dofs   :\t%d\t%d\t%d\n",(PetscInt)gmin[3],(PetscInt)gmax[3],(PetscInt)(gsum[3]/gsum[0]));CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: Local     dofs   :\t%d\t%d\t%d\n",(PetscInt)gmin[4],(PetscInt)gmax[4],(PetscInt)(gsum[4]/gsum[0]));CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(viewer,"  BDDC: ********************************** COARSE PROBLEM DETAILS *********************************\n",pcbddc->current_level);CHKERRQ(ierr);
    ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);

    /* the coarse problem can be handled with a different communicator */
    if (pcbddc->coarse_ksp) color = 1;
    else color = 0;
    ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)pc),&rank);CHKERRQ(ierr);
    ierr = MPI_Comm_size(PetscObjectComm((PetscObject)pc),&size);CHKERRQ(ierr);
    ierr = PetscSubcommCreate(PetscObjectComm((PetscObject)pc),&subcomm);CHKERRQ(ierr);
    ierr = PetscSubcommSetNumber(subcomm,PetscMin(size,2));CHKERRQ(ierr);
    ierr = PetscSubcommSetTypeGeneral(subcomm,color,rank);CHKERRQ(ierr);
    ierr = PetscViewerGetSubViewer(viewer,PetscSubcommChild(subcomm),&subviewer);CHKERRQ(ierr);
    if (color == 1) {
      ierr = KSPView(pcbddc->coarse_ksp,subviewer);CHKERRQ(ierr);
      ierr = PetscViewerFlush(subviewer);CHKERRQ(ierr);
    }
    ierr = PetscViewerRestoreSubViewer(viewer,PetscSubcommChild(subcomm),&subviewer);CHKERRQ(ierr);
    ierr = PetscSubcommDestroy(&subcomm);CHKERRQ(ierr);
    ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
  }
  PetscFunctionReturn(0);
}
/* -------------------------------------------------------------------------- */
#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetDivergenceMat_BDDC"
static PetscErrorCode PCBDDCSetDivergenceMat_BDDC(PC pc, Mat divudotp, PetscBool trans, IS vl2l)
{
  PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
  PetscErrorCode ierr;

  PetscFunctionBegin;
  ierr = PetscObjectReference((PetscObject)divudotp);CHKERRQ(ierr);
  ierr = MatDestroy(&pcbddc->divudotp);CHKERRQ(ierr);
  pcbddc->divudotp = divudotp;
  pcbddc->divudotp_trans = trans;
  pcbddc->compute_nonetflux = PETSC_TRUE;
  if (vl2l) {
    ierr = PetscObjectReference((PetscObject)vl2l);CHKERRQ(ierr);
    ierr = ISDestroy(&pcbddc->divudotp_vl2l);CHKERRQ(ierr);
    pcbddc->divudotp_vl2l = vl2l;
  }
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetDivergenceMat"
/*@
 PCBDDCSetDivergenceMat - Sets the linear operator representing \int_\Omega \div {\bf u} \cdot p dx

   Collective on PC

   Input Parameters:
+  pc - the preconditioning context
.  divudotp - the matrix (must be of type MATIS)
.  trans - if trans if false (resp. true), then pressures are in the test (trial) space and velocities are in the trial (test) space.
-  vl2l - optional IS describing the local (wrt the local mat in divudotp) to local (wrt the local mat in pc->pmat) map for the velocities

   Level: advanced

   Notes: This auxiliary matrix is used to compute quadrature weights representing the net-flux across subdomain boundaries

.seealso: PCBDDC
@*/
PetscErrorCode PCBDDCSetDivergenceMat(PC pc, Mat divudotp, PetscBool trans, IS vl2l)
{
  PetscBool      ismatis;
  PetscErrorCode ierr;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(pc,PC_CLASSID,1);
  PetscValidHeaderSpecific(divudotp,MAT_CLASSID,2);
  PetscCheckSameComm(pc,1,divudotp,2);
  PetscValidLogicalCollectiveBool(pc,trans,3);
  if (vl2l) PetscValidHeaderSpecific(divudotp,IS_CLASSID,4);
  ierr = PetscObjectTypeCompare((PetscObject)divudotp,MATIS,&ismatis);CHKERRQ(ierr);
  if (!ismatis) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_ARG_WRONG,"Divergence matrix needs to be of type MATIS");
  ierr = PetscTryMethod(pc,"PCBDDCSetDivergenceMat_C",(PC,Mat,PetscBool,IS),(pc,divudotp,trans,vl2l));CHKERRQ(ierr);
  PetscFunctionReturn(0);
}
/* -------------------------------------------------------------------------- */
#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetChangeOfBasisMat_BDDC"
static PetscErrorCode PCBDDCSetChangeOfBasisMat_BDDC(PC pc, Mat change, PetscBool interior)
{
  PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
  PetscErrorCode ierr;

  PetscFunctionBegin;
  ierr = PetscObjectReference((PetscObject)change);CHKERRQ(ierr);
  ierr = MatDestroy(&pcbddc->user_ChangeOfBasisMatrix);CHKERRQ(ierr);
  pcbddc->user_ChangeOfBasisMatrix = change;
  pcbddc->change_interior = interior;
  PetscFunctionReturn(0);
}
#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetChangeOfBasisMat"
/*@
 PCBDDCSetChangeOfBasisMat - Set user defined change of basis for dofs

   Collective on PC

   Input Parameters:
+  pc - the preconditioning context
.  change - the change of basis matrix
-  interior - whether or not the change of basis modifies interior dofs

   Level: intermediate

   Notes:

.seealso: PCBDDC
@*/
PetscErrorCode PCBDDCSetChangeOfBasisMat(PC pc, Mat change, PetscBool interior)
{
  PetscErrorCode ierr;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(pc,PC_CLASSID,1);
  PetscValidHeaderSpecific(change,MAT_CLASSID,2);
  PetscCheckSameComm(pc,1,change,2);
  if (pc->mat) {
    PetscInt rows_c,cols_c,rows,cols;
    ierr = MatGetSize(pc->mat,&rows,&cols);CHKERRQ(ierr);
    ierr = MatGetSize(change,&rows_c,&cols_c);CHKERRQ(ierr);
    if (rows_c != rows) SETERRQ2(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Invalid number of rows for change of basis matrix! %d != %d",rows_c,rows);
    if (cols_c != cols) SETERRQ2(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Invalid number of columns for change of basis matrix! %d != %d",cols_c,cols);
    ierr = MatGetLocalSize(pc->mat,&rows,&cols);CHKERRQ(ierr);
    ierr = MatGetLocalSize(change,&rows_c,&cols_c);CHKERRQ(ierr);
    if (rows_c != rows) SETERRQ2(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Invalid number of local rows for change of basis matrix! %d != %d",rows_c,rows);
    if (cols_c != cols) SETERRQ2(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Invalid number of local columns for change of basis matrix! %d != %d",cols_c,cols);
  }
  ierr = PetscTryMethod(pc,"PCBDDCSetChangeOfBasisMat_C",(PC,Mat,PetscBool),(pc,change,interior));CHKERRQ(ierr);
  PetscFunctionReturn(0);
}
/* -------------------------------------------------------------------------- */
#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetPrimalVerticesIS_BDDC"
static PetscErrorCode PCBDDCSetPrimalVerticesIS_BDDC(PC pc, IS PrimalVertices)
{
  PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
  PetscBool      isequal = PETSC_FALSE;
  PetscErrorCode ierr;

  PetscFunctionBegin;
  ierr = PetscObjectReference((PetscObject)PrimalVertices);CHKERRQ(ierr);
  if (pcbddc->user_primal_vertices) {
    ierr = ISEqual(PrimalVertices,pcbddc->user_primal_vertices,&isequal);CHKERRQ(ierr);
  }
  ierr = ISDestroy(&pcbddc->user_primal_vertices);CHKERRQ(ierr);
  ierr = ISDestroy(&pcbddc->user_primal_vertices_local);CHKERRQ(ierr);
  pcbddc->user_primal_vertices = PrimalVertices;
  if (!isequal) pcbddc->recompute_topography = PETSC_TRUE;
  PetscFunctionReturn(0);
}
#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetPrimalVerticesIS"
/*@
 PCBDDCSetPrimalVerticesIS - Set additional user defined primal vertices in PCBDDC

   Collective

   Input Parameters:
+  pc - the preconditioning context
-  PrimalVertices - index set of primal vertices in global numbering (can be empty)

   Level: intermediate

   Notes:
     Any process can list any global node

.seealso: PCBDDC
@*/
PetscErrorCode PCBDDCSetPrimalVerticesIS(PC pc, IS PrimalVertices)
{
  PetscErrorCode ierr;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(pc,PC_CLASSID,1);
  PetscValidHeaderSpecific(PrimalVertices,IS_CLASSID,2);
  PetscCheckSameComm(pc,1,PrimalVertices,2);
  ierr = PetscTryMethod(pc,"PCBDDCSetPrimalVerticesIS_C",(PC,IS),(pc,PrimalVertices));CHKERRQ(ierr);
  PetscFunctionReturn(0);
}
/* -------------------------------------------------------------------------- */
#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetPrimalVerticesLocalIS_BDDC"
static PetscErrorCode PCBDDCSetPrimalVerticesLocalIS_BDDC(PC pc, IS PrimalVertices)
{
  PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
  PetscBool      isequal = PETSC_FALSE;
  PetscErrorCode ierr;

  PetscFunctionBegin;
  ierr = PetscObjectReference((PetscObject)PrimalVertices);CHKERRQ(ierr);
  if (pcbddc->user_primal_vertices_local) {
    ierr = ISEqual(PrimalVertices,pcbddc->user_primal_vertices_local,&isequal);CHKERRQ(ierr);
  }
  ierr = ISDestroy(&pcbddc->user_primal_vertices);CHKERRQ(ierr);
  ierr = ISDestroy(&pcbddc->user_primal_vertices_local);CHKERRQ(ierr);
  pcbddc->user_primal_vertices_local = PrimalVertices;
  if (!isequal) pcbddc->recompute_topography = PETSC_TRUE;
  PetscFunctionReturn(0);
}
#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetPrimalVerticesLocalIS"
/*@
 PCBDDCSetPrimalVerticesLocalIS - Set additional user defined primal vertices in PCBDDC

   Collective

   Input Parameters:
+  pc - the preconditioning context
-  PrimalVertices - index set of primal vertices in local numbering (can be empty)

   Level: intermediate

   Notes:

.seealso: PCBDDC
@*/
PetscErrorCode PCBDDCSetPrimalVerticesLocalIS(PC pc, IS PrimalVertices)
{
  PetscErrorCode ierr;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(pc,PC_CLASSID,1);
  PetscValidHeaderSpecific(PrimalVertices,IS_CLASSID,2);
  PetscCheckSameComm(pc,1,PrimalVertices,2);
  ierr = PetscTryMethod(pc,"PCBDDCSetPrimalVerticesLocalIS_C",(PC,IS),(pc,PrimalVertices));CHKERRQ(ierr);
  PetscFunctionReturn(0);
}
/* -------------------------------------------------------------------------- */
#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetCoarseningRatio_BDDC"
static PetscErrorCode PCBDDCSetCoarseningRatio_BDDC(PC pc,PetscInt k)
{
  PC_BDDC  *pcbddc = (PC_BDDC*)pc->data;

  PetscFunctionBegin;
  pcbddc->coarsening_ratio = k;
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetCoarseningRatio"
/*@
 PCBDDCSetCoarseningRatio - Set coarsening ratio used in multilevel

   Logically collective on PC

   Input Parameters:
+  pc - the preconditioning context
-  k - coarsening ratio (H/h at the coarser level)

   Options Database Keys:
.    -pc_bddc_coarsening_ratio

   Level: intermediate

   Notes:
     Approximatively k subdomains at the finer level will be aggregated into a single subdomain at the coarser level

.seealso: PCBDDC, PCBDDCSetLevels()
@*/
PetscErrorCode PCBDDCSetCoarseningRatio(PC pc,PetscInt k)
{
  PetscErrorCode ierr;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(pc,PC_CLASSID,1);
  PetscValidLogicalCollectiveInt(pc,k,2);
  ierr = PetscTryMethod(pc,"PCBDDCSetCoarseningRatio_C",(PC,PetscInt),(pc,k));CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

/* The following functions (PCBDDCSetUseExactDirichlet PCBDDCSetLevel) are not public */
#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetUseExactDirichlet_BDDC"
static PetscErrorCode PCBDDCSetUseExactDirichlet_BDDC(PC pc,PetscBool flg)
{
  PC_BDDC  *pcbddc = (PC_BDDC*)pc->data;

  PetscFunctionBegin;
  pcbddc->use_exact_dirichlet_trick = flg;
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetUseExactDirichlet"
PetscErrorCode PCBDDCSetUseExactDirichlet(PC pc,PetscBool flg)
{
  PetscErrorCode ierr;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(pc,PC_CLASSID,1);
  PetscValidLogicalCollectiveBool(pc,flg,2);
  ierr = PetscTryMethod(pc,"PCBDDCSetUseExactDirichlet_C",(PC,PetscBool),(pc,flg));CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetLevel_BDDC"
static PetscErrorCode PCBDDCSetLevel_BDDC(PC pc,PetscInt level)
{
  PC_BDDC  *pcbddc = (PC_BDDC*)pc->data;

  PetscFunctionBegin;
  pcbddc->current_level = level;
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetLevel"
PetscErrorCode PCBDDCSetLevel(PC pc,PetscInt level)
{
  PetscErrorCode ierr;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(pc,PC_CLASSID,1);
  PetscValidLogicalCollectiveInt(pc,level,2);
  ierr = PetscTryMethod(pc,"PCBDDCSetLevel_C",(PC,PetscInt),(pc,level));CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetLevels_BDDC"
static PetscErrorCode PCBDDCSetLevels_BDDC(PC pc,PetscInt levels)
{
  PC_BDDC  *pcbddc = (PC_BDDC*)pc->data;

  PetscFunctionBegin;
  pcbddc->max_levels = levels;
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetLevels"
/*@
 PCBDDCSetLevels - Sets the maximum number of levels for multilevel

   Logically collective on PC

   Input Parameters:
+  pc - the preconditioning context
-  levels - the maximum number of levels (max 9)

   Options Database Keys:
.    -pc_bddc_levels

   Level: intermediate

   Notes:
     Default value is 0, i.e. traditional one-level BDDC

.seealso: PCBDDC, PCBDDCSetCoarseningRatio()
@*/
PetscErrorCode PCBDDCSetLevels(PC pc,PetscInt levels)
{
  PetscErrorCode ierr;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(pc,PC_CLASSID,1);
  PetscValidLogicalCollectiveInt(pc,levels,2);
  if (levels > 99) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Maximum number of levels for bddc is 99\n");
  ierr = PetscTryMethod(pc,"PCBDDCSetLevels_C",(PC,PetscInt),(pc,levels));CHKERRQ(ierr);
  PetscFunctionReturn(0);
}
/* -------------------------------------------------------------------------- */

#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetDirichletBoundaries_BDDC"
static PetscErrorCode PCBDDCSetDirichletBoundaries_BDDC(PC pc,IS DirichletBoundaries)
{
  PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
  PetscBool      isequal = PETSC_FALSE;
  PetscErrorCode ierr;

  PetscFunctionBegin;
  ierr = PetscObjectReference((PetscObject)DirichletBoundaries);CHKERRQ(ierr);
  if (pcbddc->DirichletBoundaries) {
    ierr = ISEqual(DirichletBoundaries,pcbddc->DirichletBoundaries,&isequal);CHKERRQ(ierr);
  }
  /* last user setting takes precendence -> destroy any other customization */
  ierr = ISDestroy(&pcbddc->DirichletBoundariesLocal);CHKERRQ(ierr);
  ierr = ISDestroy(&pcbddc->DirichletBoundaries);CHKERRQ(ierr);
  pcbddc->DirichletBoundaries = DirichletBoundaries;
  if (!isequal) pcbddc->recompute_topography = PETSC_TRUE;
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetDirichletBoundaries"
/*@
 PCBDDCSetDirichletBoundaries - Set IS defining Dirichlet boundaries for the global problem.

   Collective

   Input Parameters:
+  pc - the preconditioning context
-  DirichletBoundaries - parallel IS defining the Dirichlet boundaries

   Level: intermediate

   Notes:
     Provide the information if you used MatZeroRows/Columns routines. Any process can list any global node

.seealso: PCBDDC, PCBDDCSetDirichletBoundariesLocal(), MatZeroRows(), MatZeroRowsColumns()
@*/
PetscErrorCode PCBDDCSetDirichletBoundaries(PC pc,IS DirichletBoundaries)
{
  PetscErrorCode ierr;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(pc,PC_CLASSID,1);
  PetscValidHeaderSpecific(DirichletBoundaries,IS_CLASSID,2);
  PetscCheckSameComm(pc,1,DirichletBoundaries,2);
  ierr = PetscTryMethod(pc,"PCBDDCSetDirichletBoundaries_C",(PC,IS),(pc,DirichletBoundaries));CHKERRQ(ierr);
  PetscFunctionReturn(0);
}
/* -------------------------------------------------------------------------- */

#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetDirichletBoundariesLocal_BDDC"
static PetscErrorCode PCBDDCSetDirichletBoundariesLocal_BDDC(PC pc,IS DirichletBoundaries)
{
  PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
  PetscBool      isequal = PETSC_FALSE;
  PetscErrorCode ierr;

  PetscFunctionBegin;
  ierr = PetscObjectReference((PetscObject)DirichletBoundaries);CHKERRQ(ierr);
  if (pcbddc->DirichletBoundariesLocal) {
    ierr = ISEqual(DirichletBoundaries,pcbddc->DirichletBoundariesLocal,&isequal);CHKERRQ(ierr);
  }
  /* last user setting takes precendence -> destroy any other customization */
  ierr = ISDestroy(&pcbddc->DirichletBoundariesLocal);CHKERRQ(ierr);
  ierr = ISDestroy(&pcbddc->DirichletBoundaries);CHKERRQ(ierr);
  pcbddc->DirichletBoundariesLocal = DirichletBoundaries;
  if (!isequal) pcbddc->recompute_topography = PETSC_TRUE;
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetDirichletBoundariesLocal"
/*@
 PCBDDCSetDirichletBoundariesLocal - Set IS defining Dirichlet boundaries for the global problem in local ordering.

   Collective

   Input Parameters:
+  pc - the preconditioning context
-  DirichletBoundaries - parallel IS defining the Dirichlet boundaries (in local ordering)

   Level: intermediate

   Notes:

.seealso: PCBDDC, PCBDDCSetDirichletBoundaries(), MatZeroRows(), MatZeroRowsColumns()
@*/
PetscErrorCode PCBDDCSetDirichletBoundariesLocal(PC pc,IS DirichletBoundaries)
{
  PetscErrorCode ierr;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(pc,PC_CLASSID,1);
  PetscValidHeaderSpecific(DirichletBoundaries,IS_CLASSID,2);
  PetscCheckSameComm(pc,1,DirichletBoundaries,2);
  ierr = PetscTryMethod(pc,"PCBDDCSetDirichletBoundariesLocal_C",(PC,IS),(pc,DirichletBoundaries));CHKERRQ(ierr);
  PetscFunctionReturn(0);
}
/* -------------------------------------------------------------------------- */

#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetNeumannBoundaries_BDDC"
static PetscErrorCode PCBDDCSetNeumannBoundaries_BDDC(PC pc,IS NeumannBoundaries)
{
  PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
  PetscBool      isequal = PETSC_FALSE;
  PetscErrorCode ierr;

  PetscFunctionBegin;
  ierr = PetscObjectReference((PetscObject)NeumannBoundaries);CHKERRQ(ierr);
  if (pcbddc->NeumannBoundaries) {
    ierr = ISEqual(NeumannBoundaries,pcbddc->NeumannBoundaries,&isequal);CHKERRQ(ierr);
  }
  /* last user setting takes precendence -> destroy any other customization */
  ierr = ISDestroy(&pcbddc->NeumannBoundariesLocal);CHKERRQ(ierr);
  ierr = ISDestroy(&pcbddc->NeumannBoundaries);CHKERRQ(ierr);
  pcbddc->NeumannBoundaries = NeumannBoundaries;
  if (!isequal) pcbddc->recompute_topography = PETSC_TRUE;
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetNeumannBoundaries"
/*@
 PCBDDCSetNeumannBoundaries - Set IS defining Neumann boundaries for the global problem.

   Collective

   Input Parameters:
+  pc - the preconditioning context
-  NeumannBoundaries - parallel IS defining the Neumann boundaries

   Level: intermediate

   Notes:
     Any process can list any global node

.seealso: PCBDDC, PCBDDCSetNeumannBoundariesLocal()
@*/
PetscErrorCode PCBDDCSetNeumannBoundaries(PC pc,IS NeumannBoundaries)
{
  PetscErrorCode ierr;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(pc,PC_CLASSID,1);
  PetscValidHeaderSpecific(NeumannBoundaries,IS_CLASSID,2);
  PetscCheckSameComm(pc,1,NeumannBoundaries,2);
  ierr = PetscTryMethod(pc,"PCBDDCSetNeumannBoundaries_C",(PC,IS),(pc,NeumannBoundaries));CHKERRQ(ierr);
  PetscFunctionReturn(0);
}
/* -------------------------------------------------------------------------- */

#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetNeumannBoundariesLocal_BDDC"
static PetscErrorCode PCBDDCSetNeumannBoundariesLocal_BDDC(PC pc,IS NeumannBoundaries)
{
  PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
  PetscBool      isequal = PETSC_FALSE;
  PetscErrorCode ierr;

  PetscFunctionBegin;
  ierr = PetscObjectReference((PetscObject)NeumannBoundaries);CHKERRQ(ierr);
  if (pcbddc->NeumannBoundariesLocal) {
    ierr = ISEqual(NeumannBoundaries,pcbddc->NeumannBoundariesLocal,&isequal);CHKERRQ(ierr);
  }
  /* last user setting takes precendence -> destroy any other customization */
  ierr = ISDestroy(&pcbddc->NeumannBoundariesLocal);CHKERRQ(ierr);
  ierr = ISDestroy(&pcbddc->NeumannBoundaries);CHKERRQ(ierr);
  pcbddc->NeumannBoundariesLocal = NeumannBoundaries;
  if (!isequal) pcbddc->recompute_topography = PETSC_TRUE;
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetNeumannBoundariesLocal"
/*@
 PCBDDCSetNeumannBoundariesLocal - Set IS defining Neumann boundaries for the global problem in local ordering.

   Collective

   Input Parameters:
+  pc - the preconditioning context
-  NeumannBoundaries - parallel IS defining the subdomain part of Neumann boundaries (in local ordering)

   Level: intermediate

   Notes:

.seealso: PCBDDC, PCBDDCSetNeumannBoundaries()
@*/
PetscErrorCode PCBDDCSetNeumannBoundariesLocal(PC pc,IS NeumannBoundaries)
{
  PetscErrorCode ierr;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(pc,PC_CLASSID,1);
  PetscValidHeaderSpecific(NeumannBoundaries,IS_CLASSID,2);
  PetscCheckSameComm(pc,1,NeumannBoundaries,2);
  ierr = PetscTryMethod(pc,"PCBDDCSetNeumannBoundariesLocal_C",(PC,IS),(pc,NeumannBoundaries));CHKERRQ(ierr);
  PetscFunctionReturn(0);
}
/* -------------------------------------------------------------------------- */

#undef __FUNCT__
#define __FUNCT__ "PCBDDCGetDirichletBoundaries_BDDC"
static PetscErrorCode PCBDDCGetDirichletBoundaries_BDDC(PC pc,IS *DirichletBoundaries)
{
  PC_BDDC  *pcbddc = (PC_BDDC*)pc->data;

  PetscFunctionBegin;
  *DirichletBoundaries = pcbddc->DirichletBoundaries;
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "PCBDDCGetDirichletBoundaries"
/*@
 PCBDDCGetDirichletBoundaries - Get parallel IS for Dirichlet boundaries

   Collective

   Input Parameters:
.  pc - the preconditioning context

   Output Parameters:
.  DirichletBoundaries - index set defining the Dirichlet boundaries

   Level: intermediate

   Notes:
     The IS returned (if any) is the same passed in earlier by the user with PCBDDCSetDirichletBoundaries

.seealso: PCBDDC
@*/
PetscErrorCode PCBDDCGetDirichletBoundaries(PC pc,IS *DirichletBoundaries)
{
  PetscErrorCode ierr;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(pc,PC_CLASSID,1);
  ierr = PetscUseMethod(pc,"PCBDDCGetDirichletBoundaries_C",(PC,IS*),(pc,DirichletBoundaries));CHKERRQ(ierr);
  PetscFunctionReturn(0);
}
/* -------------------------------------------------------------------------- */

#undef __FUNCT__
#define __FUNCT__ "PCBDDCGetDirichletBoundariesLocal_BDDC"
static PetscErrorCode PCBDDCGetDirichletBoundariesLocal_BDDC(PC pc,IS *DirichletBoundaries)
{
  PC_BDDC  *pcbddc = (PC_BDDC*)pc->data;

  PetscFunctionBegin;
  *DirichletBoundaries = pcbddc->DirichletBoundariesLocal;
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "PCBDDCGetDirichletBoundariesLocal"
/*@
 PCBDDCGetDirichletBoundariesLocal - Get parallel IS for Dirichlet boundaries (in local ordering)

   Collective

   Input Parameters:
.  pc - the preconditioning context

   Output Parameters:
.  DirichletBoundaries - index set defining the subdomain part of Dirichlet boundaries

   Level: intermediate

   Notes:
     The IS returned could be the same passed in earlier by the user (if provided with PCBDDCSetDirichletBoundariesLocal) or a global-to-local map of the global IS (if provided with PCBDDCSetDirichletBoundaries).
          In the latter case, the IS will be available after PCSetUp.

.seealso: PCBDDC
@*/
PetscErrorCode PCBDDCGetDirichletBoundariesLocal(PC pc,IS *DirichletBoundaries)
{
  PetscErrorCode ierr;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(pc,PC_CLASSID,1);
  ierr = PetscUseMethod(pc,"PCBDDCGetDirichletBoundariesLocal_C",(PC,IS*),(pc,DirichletBoundaries));CHKERRQ(ierr);
  PetscFunctionReturn(0);
}
/* -------------------------------------------------------------------------- */

#undef __FUNCT__
#define __FUNCT__ "PCBDDCGetNeumannBoundaries_BDDC"
static PetscErrorCode PCBDDCGetNeumannBoundaries_BDDC(PC pc,IS *NeumannBoundaries)
{
  PC_BDDC  *pcbddc = (PC_BDDC*)pc->data;

  PetscFunctionBegin;
  *NeumannBoundaries = pcbddc->NeumannBoundaries;
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "PCBDDCGetNeumannBoundaries"
/*@
 PCBDDCGetNeumannBoundaries - Get parallel IS for Neumann boundaries

   Collective

   Input Parameters:
.  pc - the preconditioning context

   Output Parameters:
.  NeumannBoundaries - index set defining the Neumann boundaries

   Level: intermediate

   Notes:
     The IS returned (if any) is the same passed in earlier by the user with PCBDDCSetNeumannBoundaries

.seealso: PCBDDC
@*/
PetscErrorCode PCBDDCGetNeumannBoundaries(PC pc,IS *NeumannBoundaries)
{
  PetscErrorCode ierr;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(pc,PC_CLASSID,1);
  ierr = PetscUseMethod(pc,"PCBDDCGetNeumannBoundaries_C",(PC,IS*),(pc,NeumannBoundaries));CHKERRQ(ierr);
  PetscFunctionReturn(0);
}
/* -------------------------------------------------------------------------- */

#undef __FUNCT__
#define __FUNCT__ "PCBDDCGetNeumannBoundariesLocal_BDDC"
static PetscErrorCode PCBDDCGetNeumannBoundariesLocal_BDDC(PC pc,IS *NeumannBoundaries)
{
  PC_BDDC  *pcbddc = (PC_BDDC*)pc->data;

  PetscFunctionBegin;
  *NeumannBoundaries = pcbddc->NeumannBoundariesLocal;
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "PCBDDCGetNeumannBoundariesLocal"
/*@
 PCBDDCGetNeumannBoundariesLocal - Get parallel IS for Neumann boundaries (in local ordering)

   Collective

   Input Parameters:
.  pc - the preconditioning context

   Output Parameters:
.  NeumannBoundaries - index set defining the subdomain part of Neumann boundaries

   Level: intermediate

   Notes:
     The IS returned could be the same passed in earlier by the user (if provided with PCBDDCSetNeumannBoundariesLocal) or a global-to-local map of the global IS (if provided with PCBDDCSetNeumannBoundaries).
          In the latter case, the IS will be available after PCSetUp.

.seealso: PCBDDC
@*/
PetscErrorCode PCBDDCGetNeumannBoundariesLocal(PC pc,IS *NeumannBoundaries)
{
  PetscErrorCode ierr;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(pc,PC_CLASSID,1);
  ierr = PetscUseMethod(pc,"PCBDDCGetNeumannBoundariesLocal_C",(PC,IS*),(pc,NeumannBoundaries));CHKERRQ(ierr);
  PetscFunctionReturn(0);
}
/* -------------------------------------------------------------------------- */

#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetLocalAdjacencyGraph_BDDC"
static PetscErrorCode PCBDDCSetLocalAdjacencyGraph_BDDC(PC pc, PetscInt nvtxs,const PetscInt xadj[],const PetscInt adjncy[], PetscCopyMode copymode)
{
  PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
  PCBDDCGraph    mat_graph = pcbddc->mat_graph;
  PetscBool      same_data = PETSC_FALSE;
  PetscErrorCode ierr;

  PetscFunctionBegin;
  if (!nvtxs) {
    ierr = PCBDDCGraphResetCSR(mat_graph);CHKERRQ(ierr);
    PetscFunctionReturn(0);
  }
  if (mat_graph->nvtxs_csr == nvtxs) {
    if (mat_graph->xadj == xadj && mat_graph->adjncy == adjncy) same_data = PETSC_TRUE;
    if (!same_data && mat_graph->xadj[nvtxs] == xadj[nvtxs]) {
      ierr = PetscMemcmp(adjncy,mat_graph->adjncy,nvtxs*sizeof(PetscInt),&same_data);CHKERRQ(ierr);
    }
  }
  if (!same_data) {
    /* free old CSR */
    ierr = PCBDDCGraphResetCSR(mat_graph);CHKERRQ(ierr);
    /* get CSR into graph structure */
    if (copymode == PETSC_COPY_VALUES) {
      ierr = PetscMalloc1(nvtxs+1,&mat_graph->xadj);CHKERRQ(ierr);
      ierr = PetscMalloc1(xadj[nvtxs],&mat_graph->adjncy);CHKERRQ(ierr);
      ierr = PetscMemcpy(mat_graph->xadj,xadj,(nvtxs+1)*sizeof(PetscInt));CHKERRQ(ierr);
      ierr = PetscMemcpy(mat_graph->adjncy,adjncy,xadj[nvtxs]*sizeof(PetscInt));CHKERRQ(ierr);
      mat_graph->freecsr = PETSC_TRUE;
    } else if (copymode == PETSC_OWN_POINTER) {
      mat_graph->xadj    = (PetscInt*)xadj;
      mat_graph->adjncy  = (PetscInt*)adjncy;
      mat_graph->freecsr = PETSC_TRUE;
    } else if (copymode == PETSC_USE_POINTER) {
      mat_graph->xadj    = (PetscInt*)xadj;
      mat_graph->adjncy  = (PetscInt*)adjncy;
      mat_graph->freecsr = PETSC_FALSE;
    } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unsupported copy mode %d",copymode);
    mat_graph->nvtxs_csr = nvtxs;
    pcbddc->recompute_topography = PETSC_TRUE;
  }
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetLocalAdjacencyGraph"
/*@
 PCBDDCSetLocalAdjacencyGraph - Set adjacency structure (CSR graph) of the local matrix

   Not collective

   Input Parameters:
+  pc - the preconditioning context
.  nvtxs - number of local vertices of the graph (i.e., the size of the local problem)
.  xadj, adjncy - the CSR graph
-  copymode - either PETSC_COPY_VALUES or PETSC_OWN_POINTER.

   Level: intermediate

   Notes:

.seealso: PCBDDC,PetscCopyMode
@*/
PetscErrorCode PCBDDCSetLocalAdjacencyGraph(PC pc,PetscInt nvtxs,const PetscInt xadj[],const PetscInt adjncy[], PetscCopyMode copymode)
{
  void (*f)(void) = 0;
  PetscErrorCode ierr;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(pc,PC_CLASSID,1);
  if (nvtxs) {
    PetscValidIntPointer(xadj,3);
    PetscValidIntPointer(adjncy,4);
  }
  if (copymode != PETSC_COPY_VALUES && copymode != PETSC_OWN_POINTER)  SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unsupported copy mode %d",copymode);
  ierr = PetscTryMethod(pc,"PCBDDCSetLocalAdjacencyGraph_C",(PC,PetscInt,const PetscInt[],const PetscInt[],PetscCopyMode),(pc,nvtxs,xadj,adjncy,copymode));CHKERRQ(ierr);
  /* free arrays if PCBDDC is not the PC type */
  ierr = PetscObjectQueryFunction((PetscObject)pc,"PCBDDCSetLocalAdjacencyGraph_C",&f);CHKERRQ(ierr);
  if (!f && copymode == PETSC_OWN_POINTER) {
    ierr = PetscFree(xadj);CHKERRQ(ierr);
    ierr = PetscFree(adjncy);CHKERRQ(ierr);
  }
  PetscFunctionReturn(0);
}
/* -------------------------------------------------------------------------- */

#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetDofsSplittingLocal_BDDC"
static PetscErrorCode PCBDDCSetDofsSplittingLocal_BDDC(PC pc,PetscInt n_is, IS ISForDofs[])
{
  PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
  PetscInt       i;
  PetscBool      isequal = PETSC_FALSE;
  PetscErrorCode ierr;

  PetscFunctionBegin;
  if (pcbddc->n_ISForDofsLocal == n_is) {
    for (i=0;i<n_is;i++) {
      PetscBool isequalt;
      ierr = ISEqual(ISForDofs[i],pcbddc->ISForDofsLocal[i],&isequalt);CHKERRQ(ierr);
      if (!isequalt) break;
    }
    if (i == n_is) isequal = PETSC_TRUE;
  }
  for (i=0;i<n_is;i++) {
    ierr = PetscObjectReference((PetscObject)ISForDofs[i]);CHKERRQ(ierr);
  }
  /* Destroy ISes if they were already set */
  for (i=0;i<pcbddc->n_ISForDofsLocal;i++) {
    ierr = ISDestroy(&pcbddc->ISForDofsLocal[i]);CHKERRQ(ierr);
  }
  ierr = PetscFree(pcbddc->ISForDofsLocal);CHKERRQ(ierr);
  /* last user setting takes precendence -> destroy any other customization */
  for (i=0;i<pcbddc->n_ISForDofs;i++) {
    ierr = ISDestroy(&pcbddc->ISForDofs[i]);CHKERRQ(ierr);
  }
  ierr = PetscFree(pcbddc->ISForDofs);CHKERRQ(ierr);
  pcbddc->n_ISForDofs = 0;
  /* allocate space then set */
  if (n_is) {
    ierr = PetscMalloc1(n_is,&pcbddc->ISForDofsLocal);CHKERRQ(ierr);
  }
  for (i=0;i<n_is;i++) {
    pcbddc->ISForDofsLocal[i] = ISForDofs[i];
  }
  pcbddc->n_ISForDofsLocal = n_is;
  if (n_is) pcbddc->user_provided_isfordofs = PETSC_TRUE;
  if (!isequal) pcbddc->recompute_topography = PETSC_TRUE;
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetDofsSplittingLocal"
/*@
 PCBDDCSetDofsSplittingLocal - Set index sets defining fields of the local subdomain matrix

   Collective

   Input Parameters:
+  pc - the preconditioning context
.  n_is - number of index sets defining the fields
-  ISForDofs - array of IS describing the fields in local ordering

   Level: intermediate

   Notes:
     n_is should be the same among processes. Not all nodes need to be listed: unlisted nodes will belong to the complement field.

.seealso: PCBDDC
@*/
PetscErrorCode PCBDDCSetDofsSplittingLocal(PC pc,PetscInt n_is, IS ISForDofs[])
{
  PetscInt       i;
  PetscErrorCode ierr;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(pc,PC_CLASSID,1);
  PetscValidLogicalCollectiveInt(pc,n_is,2);
  for (i=0;i<n_is;i++) {
    PetscCheckSameComm(pc,1,ISForDofs[i],3);
    PetscValidHeaderSpecific(ISForDofs[i],IS_CLASSID,3);
  }
  ierr = PetscTryMethod(pc,"PCBDDCSetDofsSplittingLocal_C",(PC,PetscInt,IS[]),(pc,n_is,ISForDofs));CHKERRQ(ierr);
  PetscFunctionReturn(0);
}
/* -------------------------------------------------------------------------- */

#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetDofsSplitting_BDDC"
static PetscErrorCode PCBDDCSetDofsSplitting_BDDC(PC pc,PetscInt n_is, IS ISForDofs[])
{
  PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
  PetscInt       i;
  PetscBool      isequal = PETSC_FALSE;
  PetscErrorCode ierr;

  PetscFunctionBegin;
  if (pcbddc->n_ISForDofs == n_is) {
    for (i=0;i<n_is;i++) {
      PetscBool isequalt;
      ierr = ISEqual(ISForDofs[i],pcbddc->ISForDofs[i],&isequalt);CHKERRQ(ierr);
      if (!isequalt) break;
    }
    if (i == n_is) isequal = PETSC_TRUE;
  }
  for (i=0;i<n_is;i++) {
    ierr = PetscObjectReference((PetscObject)ISForDofs[i]);CHKERRQ(ierr);
  }
  /* Destroy ISes if they were already set */
  for (i=0;i<pcbddc->n_ISForDofs;i++) {
    ierr = ISDestroy(&pcbddc->ISForDofs[i]);CHKERRQ(ierr);
  }
  ierr = PetscFree(pcbddc->ISForDofs);CHKERRQ(ierr);
  /* last user setting takes precendence -> destroy any other customization */
  for (i=0;i<pcbddc->n_ISForDofsLocal;i++) {
    ierr = ISDestroy(&pcbddc->ISForDofsLocal[i]);CHKERRQ(ierr);
  }
  ierr = PetscFree(pcbddc->ISForDofsLocal);CHKERRQ(ierr);
  pcbddc->n_ISForDofsLocal = 0;
  /* allocate space then set */
  if (n_is) {
    ierr = PetscMalloc1(n_is,&pcbddc->ISForDofs);CHKERRQ(ierr);
  }
  for (i=0;i<n_is;i++) {
    pcbddc->ISForDofs[i] = ISForDofs[i];
  }
  pcbddc->n_ISForDofs = n_is;
  if (n_is) pcbddc->user_provided_isfordofs = PETSC_TRUE;
  if (!isequal) pcbddc->recompute_topography = PETSC_TRUE;
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "PCBDDCSetDofsSplitting"
/*@
 PCBDDCSetDofsSplitting - Set index sets defining fields of the global matrix

   Collective

   Input Parameters:
+  pc - the preconditioning context
.  n_is - number of index sets defining the fields
-  ISForDofs - array of IS describing the fields in global ordering

   Level: intermediate

   Notes:
     Any process can list any global node. Not all nodes need to be listed: unlisted nodes will belong to the complement field.

.seealso: PCBDDC
@*/
PetscErrorCode PCBDDCSetDofsSplitting(PC pc,PetscInt n_is, IS ISForDofs[])
{
  PetscInt       i;
  PetscErrorCode ierr;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(pc,PC_CLASSID,1);
  PetscValidLogicalCollectiveInt(pc,n_is,2);
  for (i=0;i<n_is;i++) {
    PetscCheckSameComm(pc,1,ISForDofs[i],3);
    PetscValidHeaderSpecific(ISForDofs[i],IS_CLASSID,3);
  }
  ierr = PetscTryMethod(pc,"PCBDDCSetDofsSplitting_C",(PC,PetscInt,IS[]),(pc,n_is,ISForDofs));CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

/* -------------------------------------------------------------------------- */
#undef __FUNCT__
#define __FUNCT__ "PCPreSolve_BDDC"
/* -------------------------------------------------------------------------- */
/*
   PCPreSolve_BDDC - Changes the right hand side and (if necessary) the initial
                     guess if a transformation of basis approach has been selected.

   Input Parameter:
+  pc - the preconditioner contex

   Application Interface Routine: PCPreSolve()

   Notes:
     The interface routine PCPreSolve() is not usually called directly by
   the user, but instead is called by KSPSolve().
*/
static PetscErrorCode PCPreSolve_BDDC(PC pc, KSP ksp, Vec rhs, Vec x)
{
  PetscErrorCode ierr;
  PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
  PC_IS          *pcis = (PC_IS*)(pc->data);
  Vec            used_vec;
  PetscBool      save_rhs = PETSC_TRUE, benign_correction_computed;

  PetscFunctionBegin;
  /* if we are working with CG, one dirichlet solve can be avoided during Krylov iterations */
  if (ksp) {
    PetscBool iscg, isgroppcg, ispipecg, ispipecgrr;
    ierr = PetscObjectTypeCompare((PetscObject)ksp,KSPCG,&iscg);CHKERRQ(ierr);
    ierr = PetscObjectTypeCompare((PetscObject)ksp,KSPGROPPCG,&isgroppcg);CHKERRQ(ierr);
    ierr = PetscObjectTypeCompare((PetscObject)ksp,KSPPIPECG,&ispipecg);CHKERRQ(ierr);
    ierr = PetscObjectTypeCompare((PetscObject)ksp,KSPPIPECGRR,&ispipecgrr);CHKERRQ(ierr);
    if (pcbddc->benign_apply_coarse_only || pcbddc->switch_static || (!iscg && !isgroppcg && !ispipecg && !ispipecgrr)) {
      ierr = PCBDDCSetUseExactDirichlet(pc,PETSC_FALSE);CHKERRQ(ierr);
    }
  }
  if (pcbddc->benign_apply_coarse_only || pcbddc->switch_static) {
    ierr = PCBDDCSetUseExactDirichlet(pc,PETSC_FALSE);CHKERRQ(ierr);
  }

  /* Creates parallel work vectors used in presolve */
  if (!pcbddc->original_rhs) {
    ierr = VecDuplicate(pcis->vec1_global,&pcbddc->original_rhs);CHKERRQ(ierr);
  }
  if (!pcbddc->temp_solution) {
    ierr = VecDuplicate(pcis->vec1_global,&pcbddc->temp_solution);CHKERRQ(ierr);
  }

  pcbddc->temp_solution_used = PETSC_FALSE;
  if (x) {
    ierr = PetscObjectReference((PetscObject)x);CHKERRQ(ierr);
    used_vec = x;
  } else { /* it can only happen when calling PCBDDCMatFETIDPGetRHS */
    ierr = PetscObjectReference((PetscObject)pcbddc->temp_solution);CHKERRQ(ierr);
    used_vec = pcbddc->temp_solution;
    ierr = VecSet(used_vec,0.0);CHKERRQ(ierr);
    pcbddc->temp_solution_used = PETSC_TRUE;
    ierr = VecCopy(rhs,pcbddc->original_rhs);CHKERRQ(ierr);
    save_rhs = PETSC_FALSE;
    pcbddc->eliminate_dirdofs = PETSC_TRUE;
  }

  /* hack into ksp data structure since PCPreSolve comes earlier than setting to zero the guess in src/ksp/ksp/interface/itfunc.c */
  if (ksp) {
    /* store the flag for the initial guess since it will be restored back during PCPostSolve_BDDC */
    ierr = KSPGetInitialGuessNonzero(ksp,&pcbddc->ksp_guess_nonzero);CHKERRQ(ierr);
    if (!pcbddc->ksp_guess_nonzero) {
      ierr = VecSet(used_vec,0.0);CHKERRQ(ierr);
    }
  }

  pcbddc->rhs_change = PETSC_FALSE;
  /* Take into account zeroed rows -> change rhs and store solution removed */
  if (rhs && pcbddc->eliminate_dirdofs) {
    IS dirIS = NULL;

    /* DirichletBoundariesLocal may not be consistent among neighbours; gets a dirichlet dofs IS from graph (may be cached) */
    ierr = PCBDDCGraphGetDirichletDofs(pcbddc->mat_graph,&dirIS);CHKERRQ(ierr);
    if (dirIS) {
      Mat_IS            *matis = (Mat_IS*)pc->pmat->data;
      PetscInt          dirsize,i,*is_indices;
      PetscScalar       *array_x;
      const PetscScalar *array_diagonal;

      ierr = MatGetDiagonal(pc->pmat,pcis->vec1_global);CHKERRQ(ierr);
      ierr = VecPointwiseDivide(pcis->vec1_global,rhs,pcis->vec1_global);CHKERRQ(ierr);
      ierr = VecScatterBegin(matis->rctx,pcis->vec1_global,pcis->vec2_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
      ierr = VecScatterEnd(matis->rctx,pcis->vec1_global,pcis->vec2_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
      ierr = VecScatterBegin(matis->rctx,used_vec,pcis->vec1_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
      ierr = VecScatterEnd(matis->rctx,used_vec,pcis->vec1_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
      ierr = ISGetLocalSize(dirIS,&dirsize);CHKERRQ(ierr);
      ierr = VecGetArray(pcis->vec1_N,&array_x);CHKERRQ(ierr);
      ierr = VecGetArrayRead(pcis->vec2_N,&array_diagonal);CHKERRQ(ierr);
      ierr = ISGetIndices(dirIS,(const PetscInt**)&is_indices);CHKERRQ(ierr);
      for (i=0; i<dirsize; i++) array_x[is_indices[i]] = array_diagonal[is_indices[i]];
      ierr = ISRestoreIndices(dirIS,(const PetscInt**)&is_indices);CHKERRQ(ierr);
      ierr = VecRestoreArrayRead(pcis->vec2_N,&array_diagonal);CHKERRQ(ierr);
      ierr = VecRestoreArray(pcis->vec1_N,&array_x);CHKERRQ(ierr);
      ierr = VecScatterBegin(matis->rctx,pcis->vec1_N,used_vec,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
      ierr = VecScatterEnd(matis->rctx,pcis->vec1_N,used_vec,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
      pcbddc->rhs_change = PETSC_TRUE;
      ierr = ISDestroy(&dirIS);CHKERRQ(ierr);
    }
  }

  /* remove the computed solution or the initial guess from the rhs */
  if (pcbddc->rhs_change || (ksp && pcbddc->ksp_guess_nonzero) ) {
    /* save the original rhs */
    if (save_rhs) {
      ierr = VecSwap(rhs,pcbddc->original_rhs);CHKERRQ(ierr);
      save_rhs = PETSC_FALSE;
    }
    pcbddc->rhs_change = PETSC_TRUE;
    ierr = VecScale(used_vec,-1.0);CHKERRQ(ierr);
    ierr = MatMultAdd(pc->mat,used_vec,pcbddc->original_rhs,rhs);CHKERRQ(ierr);
    ierr = VecScale(used_vec,-1.0);CHKERRQ(ierr);
    ierr = VecCopy(used_vec,pcbddc->temp_solution);CHKERRQ(ierr);
    pcbddc->temp_solution_used = PETSC_TRUE;
    if (ksp) {
      ierr = KSPSetInitialGuessNonzero(ksp,PETSC_FALSE);CHKERRQ(ierr);
    }
  }
  ierr = VecDestroy(&used_vec);CHKERRQ(ierr);

  /* compute initial vector in benign space if needed
     and remove non-benign solution from the rhs */
  benign_correction_computed = PETSC_FALSE;
  if (rhs && pcbddc->benign_compute_correction && pcbddc->benign_have_null) {
    /* compute u^*_h using ideas similar to those in Xuemin Tu's PhD thesis (see Section 4.8.1)
       Recursively apply BDDC in the multilevel case */
    if (!pcbddc->benign_vec) {
      ierr = VecDuplicate(rhs,&pcbddc->benign_vec);CHKERRQ(ierr);
    }
    pcbddc->benign_apply_coarse_only = PETSC_TRUE;
    if (!pcbddc->benign_skip_correction) {
      ierr = PCApply_BDDC(pc,rhs,pcbddc->benign_vec);CHKERRQ(ierr);
      benign_correction_computed = PETSC_TRUE;
      if (pcbddc->temp_solution_used) {
        ierr = VecAXPY(pcbddc->temp_solution,1.0,pcbddc->benign_vec);CHKERRQ(ierr);
      }
      ierr = VecScale(pcbddc->benign_vec,-1.0);CHKERRQ(ierr);
      /* store the original rhs if not done earlier */
      if (save_rhs) {
        ierr = VecSwap(rhs,pcbddc->original_rhs);CHKERRQ(ierr);
        save_rhs = PETSC_FALSE;
      }
      if (pcbddc->rhs_change) {
        ierr = MatMultAdd(pc->mat,pcbddc->benign_vec,rhs,rhs);CHKERRQ(ierr);
      } else {
        ierr = MatMultAdd(pc->mat,pcbddc->benign_vec,pcbddc->original_rhs,rhs);CHKERRQ(ierr);
      }
      pcbddc->rhs_change = PETSC_TRUE;
    }
    pcbddc->benign_apply_coarse_only = PETSC_FALSE;
  }

  /* dbg output */
  if (pcbddc->dbg_flag && benign_correction_computed) {
    Vec v;
    ierr = VecDuplicate(pcis->vec1_global,&v);CHKERRQ(ierr);
    ierr = MatMultTranspose(pcbddc->ChangeOfBasisMatrix,rhs,v);CHKERRQ(ierr);
    ierr = PCBDDCBenignGetOrSetP0(pc,v,PETSC_TRUE);CHKERRQ(ierr);
    ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"LEVEL %d: is the correction benign?\n",pcbddc->current_level);CHKERRQ(ierr);
    ierr = PetscScalarView(pcbddc->benign_n,pcbddc->benign_p0,PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)pc)));CHKERRQ(ierr);
    ierr = VecDestroy(&v);CHKERRQ(ierr);
  }

  /* set initial guess if using PCG */
  pcbddc->exact_dirichlet_trick_app = PETSC_FALSE;
  if (x && pcbddc->use_exact_dirichlet_trick) {
    ierr = VecSet(x,0.0);CHKERRQ(ierr);
    if (pcbddc->ChangeOfBasisMatrix && pcbddc->change_interior) {
      if (benign_correction_computed) { /* we have already saved the changed rhs */
        ierr = VecLockPop(pcis->vec1_global);CHKERRQ(ierr);
      } else {
        ierr = MatMultTranspose(pcbddc->ChangeOfBasisMatrix,rhs,pcis->vec1_global);CHKERRQ(ierr);
      }
      ierr = VecScatterBegin(pcis->global_to_D,pcis->vec1_global,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
      ierr = VecScatterEnd(pcis->global_to_D,pcis->vec1_global,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
    } else {
      ierr = VecScatterBegin(pcis->global_to_D,rhs,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
      ierr = VecScatterEnd(pcis->global_to_D,rhs,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
    }
    ierr = KSPSolve(pcbddc->ksp_D,pcis->vec1_D,pcis->vec2_D);CHKERRQ(ierr);
    if (pcbddc->ChangeOfBasisMatrix && pcbddc->change_interior) {
      ierr = VecSet(pcis->vec1_global,0.);CHKERRQ(ierr);
      ierr = VecScatterBegin(pcis->global_to_D,pcis->vec2_D,pcis->vec1_global,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
      ierr = VecScatterEnd(pcis->global_to_D,pcis->vec2_D,pcis->vec1_global,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
      ierr = MatMult(pcbddc->ChangeOfBasisMatrix,pcis->vec1_global,x);CHKERRQ(ierr);
    } else {
      ierr = VecScatterBegin(pcis->global_to_D,pcis->vec2_D,x,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
      ierr = VecScatterEnd(pcis->global_to_D,pcis->vec2_D,x,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
    }
    if (ksp) {
      ierr = KSPSetInitialGuessNonzero(ksp,PETSC_TRUE);CHKERRQ(ierr);
    }
    pcbddc->exact_dirichlet_trick_app = PETSC_TRUE;
  } else if (pcbddc->ChangeOfBasisMatrix && pcbddc->change_interior && benign_correction_computed && pcbddc->use_exact_dirichlet_trick) {
    ierr = VecLockPop(pcis->vec1_global);CHKERRQ(ierr);
  }
  PetscFunctionReturn(0);
}

/* -------------------------------------------------------------------------- */
#undef __FUNCT__
#define __FUNCT__ "PCPostSolve_BDDC"
/* -------------------------------------------------------------------------- */
/*
   PCPostSolve_BDDC - Changes the computed solution if a transformation of basis
                     approach has been selected. Also, restores rhs to its original state.

   Input Parameter:
+  pc - the preconditioner contex

   Application Interface Routine: PCPostSolve()

   Notes:
     The interface routine PCPostSolve() is not usually called directly by
     the user, but instead is called by KSPSolve().
*/
static PetscErrorCode PCPostSolve_BDDC(PC pc, KSP ksp, Vec rhs, Vec x)
{
  PetscErrorCode ierr;
  PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;

  PetscFunctionBegin;
  /* add solution removed in presolve */
  if (x && pcbddc->rhs_change) {
    if (pcbddc->temp_solution_used) {
      ierr = VecAXPY(x,1.0,pcbddc->temp_solution);CHKERRQ(ierr);
    } else if (pcbddc->benign_compute_correction) {
      ierr = VecAXPY(x,-1.0,pcbddc->benign_vec);CHKERRQ(ierr);
    }
  }
  pcbddc->temp_solution_used = PETSC_FALSE;

  /* restore rhs to its original state (not needed for FETI-DP) */
  if (rhs && pcbddc->rhs_change) {
    ierr = VecSwap(rhs,pcbddc->original_rhs);CHKERRQ(ierr);
  }
  pcbddc->rhs_change = PETSC_FALSE;
  /* restore ksp guess state */
  if (ksp) {
    ierr = KSPSetInitialGuessNonzero(ksp,pcbddc->ksp_guess_nonzero);CHKERRQ(ierr);
  }
  /* reset flag for exact dirichlet trick */
  pcbddc->exact_dirichlet_trick_app = PETSC_FALSE;
  PetscFunctionReturn(0);
}
/* -------------------------------------------------------------------------- */
#undef __FUNCT__
#define __FUNCT__ "PCSetUp_BDDC"
/* -------------------------------------------------------------------------- */
/*
   PCSetUp_BDDC - Prepares for the use of the BDDC preconditioner
                  by setting data structures and options.

   Input Parameter:
+  pc - the preconditioner context

   Application Interface Routine: PCSetUp()

   Notes:
     The interface routine PCSetUp() is not usually called directly by
     the user, but instead is called by PCApply() if necessary.
*/
PetscErrorCode PCSetUp_BDDC(PC pc)
{
  PetscErrorCode ierr;
  PC_BDDC*       pcbddc = (PC_BDDC*)pc->data;
  Mat_IS*        matis;
  MatNullSpace   nearnullspace;
  IS             zerodiag = NULL;
  PetscInt       nrows,ncols;
  PetscBool      computetopography,computesolvers,computesubschurs;
  PetscBool      computeconstraintsmatrix;
  PetscBool      new_nearnullspace_provided,ismatis;

  PetscFunctionBegin;
  ierr = PetscObjectTypeCompare((PetscObject)pc->pmat,MATIS,&ismatis);CHKERRQ(ierr);
  if (!ismatis) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_ARG_WRONG,"PCBDDC preconditioner requires matrix of type MATIS");
  ierr = MatGetSize(pc->pmat,&nrows,&ncols);CHKERRQ(ierr);
  if (nrows != ncols) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"PCBDDC preconditioner requires a square preconditioning matrix");
  matis = (Mat_IS*)pc->pmat->data;
  /* the following lines of code should be replaced by a better logic between PCIS, PCNN, PCBDDC and other future nonoverlapping preconditioners */
  /* For BDDC we need to define a local "Neumann" problem different to that defined in PCISSetup
     Also, BDDC builds its own KSP for the Dirichlet problem */
  /* split work */
  if (pc->setupcalled) {
    if (pc->flag == SAME_NONZERO_PATTERN) {
      computetopography = PETSC_FALSE;
      computesolvers = PETSC_TRUE;
    } else { /* DIFFERENT_NONZERO_PATTERN */
      computetopography = PETSC_TRUE;
      computesolvers = PETSC_TRUE;
    }
  } else {
    computetopography = PETSC_TRUE;
    computesolvers = PETSC_TRUE;
  }
  if (pcbddc->recompute_topography) {
    computetopography = PETSC_TRUE;
  }
  pcbddc->recompute_topography = computetopography;
  computeconstraintsmatrix = PETSC_FALSE;

  /* check parameters' compatibility */
  if (!pcbddc->use_deluxe_scaling) pcbddc->deluxe_zerorows = PETSC_FALSE;
  pcbddc->adaptive_selection = (PetscBool)(pcbddc->adaptive_threshold > 0.0);
  pcbddc->adaptive_userdefined = (PetscBool)(pcbddc->adaptive_selection && pcbddc->adaptive_userdefined);
  if (pcbddc->adaptive_selection) pcbddc->use_faces = PETSC_TRUE;

  computesubschurs = (PetscBool)(pcbddc->adaptive_selection || pcbddc->use_deluxe_scaling);
  if (pcbddc->switch_static) {
    PetscBool ismatis;
    ierr = PetscObjectTypeCompare((PetscObject)pc->mat,MATIS,&ismatis);CHKERRQ(ierr);
    if (!ismatis) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"When the static switch is one, the iteration matrix should be of type MATIS");
  }

  /* activate all connected components if the netflux has been requested */
  if (pcbddc->compute_nonetflux) {
    pcbddc->use_vertices = PETSC_TRUE;
    pcbddc->use_edges = PETSC_TRUE;
    pcbddc->use_faces = PETSC_TRUE;
  }

  /* Get stdout for dbg */
  if (pcbddc->dbg_flag) {
    if (!pcbddc->dbg_viewer) {
      pcbddc->dbg_viewer = PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)pc));
      ierr = PetscViewerASCIIPushSynchronized(pcbddc->dbg_viewer);CHKERRQ(ierr);
    }
    ierr = PetscViewerASCIIAddTab(pcbddc->dbg_viewer,2*pcbddc->current_level);CHKERRQ(ierr);
  }

  /* compute topology info in local ordering */
  if (pcbddc->recompute_topography) {
    ierr = PCBDDCComputeLocalTopologyInfo(pc);CHKERRQ(ierr);
  }

  if (pcbddc->user_ChangeOfBasisMatrix) {
    /* use_change_of_basis flag is used to automatically compute a change of basis from constraints */
    pcbddc->use_change_of_basis = PETSC_FALSE;
    ierr = PCBDDCComputeLocalMatrix(pc,pcbddc->user_ChangeOfBasisMatrix);CHKERRQ(ierr);
  } else {
    ierr = MatDestroy(&pcbddc->local_mat);CHKERRQ(ierr);
    ierr = PetscObjectReference((PetscObject)matis->A);CHKERRQ(ierr);
    pcbddc->local_mat = matis->A;
  }

  /* detect local disconnected subdomains if requested and not done before */
  if (pcbddc->detect_disconnected && !pcbddc->n_local_subs) {
    ierr = MatDetectDisconnectedComponents(pcbddc->local_mat,PETSC_FALSE,&pcbddc->n_local_subs,&pcbddc->local_subs);CHKERRQ(ierr);
  }

  /*
     Compute change of basis on local pressures (aka zerodiag dofs)
     This should come earlier then PCISSetUp for extracting the correct subdomain matrices
  */
  ierr = PCBDDCBenignShellMat(pc,PETSC_TRUE);CHKERRQ(ierr);
  if (pcbddc->benign_saddle_point) {
    PC_IS* pcis = (PC_IS*)pc->data;

    if (pcbddc->user_ChangeOfBasisMatrix || pcbddc->use_change_of_basis || !computesubschurs) pcbddc->benign_change_explicit = PETSC_TRUE;
    /* detect local saddle point and change the basis in pcbddc->local_mat (TODO: reuse case) */
    ierr = PCBDDCBenignDetectSaddlePoint(pc,&zerodiag);CHKERRQ(ierr);
    /* pop B0 mat from local mat */
    ierr = PCBDDCBenignPopOrPushB0(pc,PETSC_TRUE);CHKERRQ(ierr);
    /* give pcis a hint to not reuse submatrices during PCISCreate */
    if (pc->flag == SAME_NONZERO_PATTERN && pcis->reusesubmatrices == PETSC_TRUE) {
      if (pcbddc->benign_n && (pcbddc->benign_change_explicit || pcbddc->dbg_flag)) {
        pcis->reusesubmatrices = PETSC_FALSE;
      } else {
        pcis->reusesubmatrices = PETSC_TRUE;
      }
    } else {
      pcis->reusesubmatrices = PETSC_FALSE;
    }
  }

  /* propagate relevant information */
#if !defined(PETSC_USE_COMPLEX) /* workaround for reals */
  if (matis->A->symmetric_set) {
    ierr = MatSetOption(pcbddc->local_mat,MAT_HERMITIAN,matis->A->symmetric);CHKERRQ(ierr);
  }
#endif
  if (matis->A->symmetric_set) {
    ierr = MatSetOption(pcbddc->local_mat,MAT_SYMMETRIC,matis->A->symmetric);CHKERRQ(ierr);
  }
  if (matis->A->spd_set) {
    ierr = MatSetOption(pcbddc->local_mat,MAT_SPD,matis->A->spd);CHKERRQ(ierr);
  }

  /* Set up all the "iterative substructuring" common block without computing solvers */
  {
    Mat temp_mat;

    temp_mat = matis->A;
    matis->A = pcbddc->local_mat;
    ierr = PCISSetUp(pc,PETSC_FALSE);CHKERRQ(ierr);
    pcbddc->local_mat = matis->A;
    matis->A = temp_mat;
  }

  /* Analyze interface */
  if (computetopography) {
    ierr = PCBDDCAnalyzeInterface(pc);CHKERRQ(ierr);
    computeconstraintsmatrix = PETSC_TRUE;
    if (pcbddc->adaptive_selection && !pcbddc->use_deluxe_scaling && !pcbddc->mat_graph->twodim) {
      SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Cannot compute the adaptive primal space for a problem with 3D edges without deluxe scaling");
    }
    if (pcbddc->compute_nonetflux) {
      MatNullSpace nnfnnsp;

      ierr = PCBDDCComputeNoNetFlux(pc->pmat,pcbddc->divudotp,pcbddc->divudotp_trans,pcbddc->divudotp_vl2l,pcbddc->mat_graph,&nnfnnsp);CHKERRQ(ierr);
      /* TODO what if a nearnullspace is already attached? */
      ierr = MatSetNearNullSpace(pc->pmat,nnfnnsp);CHKERRQ(ierr);
      ierr = MatNullSpaceDestroy(&nnfnnsp);CHKERRQ(ierr);
    }
  }

  /* check existence of a divergence free extension, i.e.
     b(v_I,p_0) = 0 for all v_I (raise error if not).
     Also, check that PCBDDCBenignGetOrSetP0 works */
#if defined(PETSC_USE_DEBUG)
  if (pcbddc->benign_saddle_point) {
    ierr = PCBDDCBenignCheck(pc,zerodiag);CHKERRQ(ierr);
  }
#endif
  ierr = ISDestroy(&zerodiag);CHKERRQ(ierr);

  /* Setup local dirichlet solver ksp_D and sub_schurs solvers */
  if (computesolvers) {
    PCBDDCSubSchurs sub_schurs;

    if (computesubschurs && computetopography) {
      ierr = PCBDDCInitSubSchurs(pc);CHKERRQ(ierr);
    }
    /* SetUp Scaling operator (scaling matrices could be needed in SubSchursSetUp)*/
    if (!pcbddc->use_deluxe_scaling) {
      ierr = PCBDDCScalingSetUp(pc);CHKERRQ(ierr);
    }
    sub_schurs = pcbddc->sub_schurs;
    if (sub_schurs && sub_schurs->schur_explicit) {
      if (computesubschurs) {
        ierr = PCBDDCSetUpSubSchurs(pc);CHKERRQ(ierr);
      }
      ierr = PCBDDCSetUpLocalSolvers(pc,PETSC_TRUE,PETSC_FALSE);CHKERRQ(ierr);
    } else {
      ierr = PCBDDCSetUpLocalSolvers(pc,PETSC_TRUE,PETSC_FALSE);CHKERRQ(ierr);
      if (computesubschurs) {
        ierr = PCBDDCSetUpSubSchurs(pc);CHKERRQ(ierr);
      }
    }
    if (pcbddc->adaptive_selection) {
      ierr = PCBDDCAdaptiveSelection(pc);CHKERRQ(ierr);
      computeconstraintsmatrix = PETSC_TRUE;
    }
  }

  /* infer if NullSpace object attached to Mat via MatSetNearNullSpace has changed */
  new_nearnullspace_provided = PETSC_FALSE;
  ierr = MatGetNearNullSpace(pc->pmat,&nearnullspace);CHKERRQ(ierr);
  if (pcbddc->onearnullspace) { /* already used nearnullspace */
    if (!nearnullspace) { /* near null space attached to mat has been destroyed */
      new_nearnullspace_provided = PETSC_TRUE;
    } else {
      /* determine if the two nullspaces are different (should be lightweight) */
      if (nearnullspace != pcbddc->onearnullspace) {
        new_nearnullspace_provided = PETSC_TRUE;
      } else { /* maybe the user has changed the content of the nearnullspace so check vectors ObjectStateId */
        PetscInt         i;
        const Vec        *nearnullvecs;
        PetscObjectState state;
        PetscInt         nnsp_size;
        ierr = MatNullSpaceGetVecs(nearnullspace,NULL,&nnsp_size,&nearnullvecs);CHKERRQ(ierr);
        for (i=0;i<nnsp_size;i++) {
          ierr = PetscObjectStateGet((PetscObject)nearnullvecs[i],&state);CHKERRQ(ierr);
          if (pcbddc->onearnullvecs_state[i] != state) {
            new_nearnullspace_provided = PETSC_TRUE;
            break;
          }
        }
      }
    }
  } else {
    if (!nearnullspace) { /* both nearnullspaces are null */
      new_nearnullspace_provided = PETSC_FALSE;
    } else { /* nearnullspace attached later */
      new_nearnullspace_provided = PETSC_TRUE;
    }
  }

  /* Setup constraints and related work vectors */
  /* reset primal space flags */
  pcbddc->new_primal_space = PETSC_FALSE;
  pcbddc->new_primal_space_local = PETSC_FALSE;
  if (computeconstraintsmatrix || new_nearnullspace_provided) {
    /* It also sets the primal space flags */
    ierr = PCBDDCConstraintsSetUp(pc);CHKERRQ(ierr);
    /* Allocate needed local vectors (which depends on quantities defined during ConstraintsSetUp) */
    ierr = PCBDDCSetUpLocalWorkVectors(pc);CHKERRQ(ierr);
  }

  if (computesolvers || pcbddc->new_primal_space) {
    if (pcbddc->use_change_of_basis) {
      PC_IS *pcis = (PC_IS*)(pc->data);

      ierr = PCBDDCComputeLocalMatrix(pc,pcbddc->ChangeOfBasisMatrix);CHKERRQ(ierr);
      if (pcbddc->benign_change) {
        ierr = MatDestroy(&pcbddc->benign_B0);CHKERRQ(ierr);
        /* pop B0 from pcbddc->local_mat */
        ierr = PCBDDCBenignPopOrPushB0(pc,PETSC_TRUE);CHKERRQ(ierr);
      }
      /* get submatrices */
      ierr = MatDestroy(&pcis->A_IB);CHKERRQ(ierr);
      ierr = MatDestroy(&pcis->A_BI);CHKERRQ(ierr);
      ierr = MatDestroy(&pcis->A_BB);CHKERRQ(ierr);
      ierr = MatGetSubMatrix(pcbddc->local_mat,pcis->is_B_local,pcis->is_B_local,MAT_INITIAL_MATRIX,&pcis->A_BB);CHKERRQ(ierr);
      ierr = MatGetSubMatrix(pcbddc->local_mat,pcis->is_I_local,pcis->is_B_local,MAT_INITIAL_MATRIX,&pcis->A_IB);CHKERRQ(ierr);
      ierr = MatGetSubMatrix(pcbddc->local_mat,pcis->is_B_local,pcis->is_I_local,MAT_INITIAL_MATRIX,&pcis->A_BI);CHKERRQ(ierr);
      /* set flag in pcis to not reuse submatrices during PCISCreate */
      pcis->reusesubmatrices = PETSC_FALSE;
    } else if (!pcbddc->user_ChangeOfBasisMatrix && !pcbddc->benign_change) {
      ierr = MatDestroy(&pcbddc->local_mat);CHKERRQ(ierr);
      ierr = PetscObjectReference((PetscObject)matis->A);CHKERRQ(ierr);
      pcbddc->local_mat = matis->A;
    }
    /* SetUp coarse and local Neumann solvers */
    ierr = PCBDDCSetUpSolvers(pc);CHKERRQ(ierr);
    /* SetUp Scaling operator */
    if (pcbddc->use_deluxe_scaling) {
      ierr = PCBDDCScalingSetUp(pc);CHKERRQ(ierr);
    }
  }
  /* mark topography as done */
  pcbddc->recompute_topography = PETSC_FALSE;

  /* wrap pcis->A_IB and pcis->A_BI if we did not change explicitly the variables on the pressures */
  ierr = PCBDDCBenignShellMat(pc,PETSC_FALSE);CHKERRQ(ierr);

  if (pcbddc->dbg_flag) {
    ierr = PetscViewerASCIISubtractTab(pcbddc->dbg_viewer,2*pcbddc->current_level);CHKERRQ(ierr);
  }
  PetscFunctionReturn(0);
}

/* -------------------------------------------------------------------------- */
/*
   PCApply_BDDC - Applies the BDDC operator to a vector.

   Input Parameters:
+  pc - the preconditioner context
-  r - input vector (global)

   Output Parameter:
.  z - output vector (global)

   Application Interface Routine: PCApply()
 */
#undef __FUNCT__
#define __FUNCT__ "PCApply_BDDC"
PetscErrorCode PCApply_BDDC(PC pc,Vec r,Vec z)
{
  PC_IS             *pcis = (PC_IS*)(pc->data);
  PC_BDDC           *pcbddc = (PC_BDDC*)(pc->data);
  PetscInt          n_B = pcis->n_B, n_D = pcis->n - n_B;
  PetscErrorCode    ierr;
  const PetscScalar one = 1.0;
  const PetscScalar m_one = -1.0;
  const PetscScalar zero = 0.0;

/* This code is similar to that provided in nn.c for PCNN
   NN interface preconditioner changed to BDDC
   Added support for M_3 preconditioner in the reference article (code is active if pcbddc->switch_static == PETSC_TRUE) */

  PetscFunctionBegin;
  if (pcbddc->ChangeOfBasisMatrix) {
    Vec swap;

    ierr = MatMultTranspose(pcbddc->ChangeOfBasisMatrix,r,pcbddc->work_change);CHKERRQ(ierr);
    swap = pcbddc->work_change;
    pcbddc->work_change = r;
    r = swap;
    /* save rhs so that we don't need to apply the change of basis for the exact dirichlet trick in PreSolve */
    if (pcbddc->benign_apply_coarse_only && pcbddc->exact_dirichlet_trick_app && pcbddc->change_interior) {
      ierr = VecCopy(r,pcis->vec1_global);CHKERRQ(ierr);
      ierr = VecLockPush(pcis->vec1_global);CHKERRQ(ierr);
    }
  }
  if (pcbddc->benign_have_null) { /* get p0 from r */
    ierr = PCBDDCBenignGetOrSetP0(pc,r,PETSC_TRUE);CHKERRQ(ierr);
  }
  if (!pcbddc->exact_dirichlet_trick_app && !pcbddc->benign_apply_coarse_only) {
    ierr = VecCopy(r,z);CHKERRQ(ierr);
    /* First Dirichlet solve */
    ierr = VecScatterBegin(pcis->global_to_D,r,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
    ierr = VecScatterEnd(pcis->global_to_D,r,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
    /*
      Assembling right hand side for BDDC operator
      - pcis->vec1_D for the Dirichlet part (if needed, i.e. pcbddc->switch_static == PETSC_TRUE)
      - pcis->vec1_B the interface part of the global vector z
    */
    if (n_D) {
      ierr = KSPSolve(pcbddc->ksp_D,pcis->vec1_D,pcis->vec2_D);CHKERRQ(ierr);
      ierr = VecScale(pcis->vec2_D,m_one);CHKERRQ(ierr);
      if (pcbddc->switch_static) {
        Mat_IS *matis = (Mat_IS*)(pc->mat->data);

        ierr = VecSet(pcis->vec1_N,0.);CHKERRQ(ierr);
        ierr = VecScatterBegin(pcis->N_to_D,pcis->vec2_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
        ierr = VecScatterEnd(pcis->N_to_D,pcis->vec2_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
        if (!pcbddc->switch_static_change) {
          ierr = MatMult(matis->A,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
        } else {
          ierr = MatMult(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
          ierr = MatMult(matis->A,pcis->vec2_N,pcis->vec1_N);CHKERRQ(ierr);
          ierr = MatMultTranspose(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
        }
        ierr = VecScatterBegin(pcis->N_to_D,pcis->vec2_N,pcis->vec1_D,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
        ierr = VecScatterEnd(pcis->N_to_D,pcis->vec2_N,pcis->vec1_D,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
        ierr = VecScatterBegin(pcis->N_to_B,pcis->vec2_N,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
        ierr = VecScatterEnd(pcis->N_to_B,pcis->vec2_N,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
      } else {
        ierr = MatMult(pcis->A_BI,pcis->vec2_D,pcis->vec1_B);CHKERRQ(ierr);
      }
    } else {
      ierr = VecSet(pcis->vec1_B,zero);CHKERRQ(ierr);
    }
    ierr = VecScatterBegin(pcis->global_to_B,pcis->vec1_B,z,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
    ierr = VecScatterEnd(pcis->global_to_B,pcis->vec1_B,z,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
    ierr = PCBDDCScalingRestriction(pc,z,pcis->vec1_B);CHKERRQ(ierr);
  } else {
    if (!pcbddc->benign_apply_coarse_only) {
      ierr = PCBDDCScalingRestriction(pc,r,pcis->vec1_B);CHKERRQ(ierr);
    }
  }

  /* Apply interface preconditioner
     input/output vecs: pcis->vec1_B and pcis->vec1_D */
  ierr = PCBDDCApplyInterfacePreconditioner(pc,PETSC_FALSE);CHKERRQ(ierr);

  /* Apply transpose of partition of unity operator */
  ierr = PCBDDCScalingExtension(pc,pcis->vec1_B,z);CHKERRQ(ierr);

  /* Second Dirichlet solve and assembling of output */
  ierr = VecScatterBegin(pcis->global_to_B,z,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
  ierr = VecScatterEnd(pcis->global_to_B,z,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
  if (n_B) {
    if (pcbddc->switch_static) {
      Mat_IS *matis = (Mat_IS*)(pc->mat->data);

      ierr = VecScatterBegin(pcis->N_to_D,pcis->vec1_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
      ierr = VecScatterEnd(pcis->N_to_D,pcis->vec1_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
      ierr = VecScatterBegin(pcis->N_to_B,pcis->vec1_B,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
      ierr = VecScatterEnd(pcis->N_to_B,pcis->vec1_B,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
      if (!pcbddc->switch_static_change) {
        ierr = MatMult(matis->A,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
      } else {
        ierr = MatMult(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
        ierr = MatMult(matis->A,pcis->vec2_N,pcis->vec1_N);CHKERRQ(ierr);
        ierr = MatMultTranspose(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
      }
      ierr = VecScatterBegin(pcis->N_to_D,pcis->vec2_N,pcis->vec3_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
      ierr = VecScatterEnd(pcis->N_to_D,pcis->vec2_N,pcis->vec3_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
    } else {
      ierr = MatMult(pcis->A_IB,pcis->vec1_B,pcis->vec3_D);CHKERRQ(ierr);
    }
  } else if (pcbddc->switch_static) { /* n_B is zero */
    Mat_IS *matis = (Mat_IS*)(pc->mat->data);

    if (!pcbddc->switch_static_change) {
      ierr = MatMult(matis->A,pcis->vec1_D,pcis->vec3_D);CHKERRQ(ierr);
    } else {
      ierr = MatMult(pcbddc->switch_static_change,pcis->vec1_D,pcis->vec1_N);CHKERRQ(ierr);
      ierr = MatMult(matis->A,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
      ierr = MatMultTranspose(pcbddc->switch_static_change,pcis->vec2_N,pcis->vec3_D);CHKERRQ(ierr);
    }
  }
  ierr = KSPSolve(pcbddc->ksp_D,pcis->vec3_D,pcis->vec4_D);CHKERRQ(ierr);

  if (!pcbddc->exact_dirichlet_trick_app && !pcbddc->benign_apply_coarse_only) {
    if (pcbddc->switch_static) {
      ierr = VecAXPBYPCZ(pcis->vec2_D,m_one,one,m_one,pcis->vec4_D,pcis->vec1_D);CHKERRQ(ierr);
    } else {
      ierr = VecAXPBY(pcis->vec2_D,m_one,m_one,pcis->vec4_D);CHKERRQ(ierr);
    }
    ierr = VecScatterBegin(pcis->global_to_D,pcis->vec2_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
    ierr = VecScatterEnd(pcis->global_to_D,pcis->vec2_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
  } else {
    if (pcbddc->switch_static) {
      ierr = VecAXPBY(pcis->vec4_D,one,m_one,pcis->vec1_D);CHKERRQ(ierr);
    } else {
      ierr = VecScale(pcis->vec4_D,m_one);CHKERRQ(ierr);
    }
    ierr = VecScatterBegin(pcis->global_to_D,pcis->vec4_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
    ierr = VecScatterEnd(pcis->global_to_D,pcis->vec4_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
  }
  if (pcbddc->benign_have_null) { /* set p0 (computed in PCBDDCApplyInterface) */
    if (pcbddc->benign_apply_coarse_only) {
      ierr = PetscMemzero(pcbddc->benign_p0,pcbddc->benign_n*sizeof(PetscScalar));CHKERRQ(ierr);
    }
    ierr = PCBDDCBenignGetOrSetP0(pc,z,PETSC_FALSE);CHKERRQ(ierr);
  }

  if (pcbddc->ChangeOfBasisMatrix) {
    Vec swap;

    swap = r;
    r = pcbddc->work_change;
    pcbddc->work_change = swap;
    ierr = VecCopy(z,pcbddc->work_change);CHKERRQ(ierr);
    ierr = MatMult(pcbddc->ChangeOfBasisMatrix,pcbddc->work_change,z);CHKERRQ(ierr);
  }
  PetscFunctionReturn(0);
}

/* -------------------------------------------------------------------------- */
/*
   PCApplyTranspose_BDDC - Applies the transpose of the BDDC operator to a vector.

   Input Parameters:
+  pc - the preconditioner context
-  r - input vector (global)

   Output Parameter:
.  z - output vector (global)

   Application Interface Routine: PCApplyTranspose()
 */
#undef __FUNCT__
#define __FUNCT__ "PCApplyTranspose_BDDC"
PetscErrorCode PCApplyTranspose_BDDC(PC pc,Vec r,Vec z)
{
  PC_IS             *pcis = (PC_IS*)(pc->data);
  PC_BDDC           *pcbddc = (PC_BDDC*)(pc->data);
  PetscInt          n_B = pcis->n_B, n_D = pcis->n - n_B;
  PetscErrorCode    ierr;
  const PetscScalar one = 1.0;
  const PetscScalar m_one = -1.0;
  const PetscScalar zero = 0.0;

  PetscFunctionBegin;
  if (pcbddc->ChangeOfBasisMatrix) {
    Vec swap;

    ierr = MatMultTranspose(pcbddc->ChangeOfBasisMatrix,r,pcbddc->work_change);CHKERRQ(ierr);
    swap = pcbddc->work_change;
    pcbddc->work_change = r;
    r = swap;
    /* save rhs so that we don't need to apply the change of basis for the exact dirichlet trick in PreSolve */
    if (pcbddc->benign_apply_coarse_only && pcbddc->exact_dirichlet_trick_app && pcbddc->change_interior) {
      ierr = VecCopy(r,pcis->vec1_global);CHKERRQ(ierr);
      ierr = VecLockPush(pcis->vec1_global);CHKERRQ(ierr);
    }
  }
  if (pcbddc->benign_have_null) { /* get p0 from r */
    ierr = PCBDDCBenignGetOrSetP0(pc,r,PETSC_TRUE);CHKERRQ(ierr);
  }
  if (!pcbddc->exact_dirichlet_trick_app && !pcbddc->benign_apply_coarse_only) {
    ierr = VecCopy(r,z);CHKERRQ(ierr);
    /* First Dirichlet solve */
    ierr = VecScatterBegin(pcis->global_to_D,r,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
    ierr = VecScatterEnd(pcis->global_to_D,r,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
    /*
      Assembling right hand side for BDDC operator
      - pcis->vec1_D for the Dirichlet part (if needed, i.e. pcbddc->switch_static == PETSC_TRUE)
      - pcis->vec1_B the interface part of the global vector z
    */
    if (n_D) {
      ierr = KSPSolveTranspose(pcbddc->ksp_D,pcis->vec1_D,pcis->vec2_D);CHKERRQ(ierr);
      ierr = VecScale(pcis->vec2_D,m_one);CHKERRQ(ierr);
      if (pcbddc->switch_static) {
        Mat_IS *matis = (Mat_IS*)(pc->mat->data);

        ierr = VecSet(pcis->vec1_N,0.);CHKERRQ(ierr);
        ierr = VecScatterBegin(pcis->N_to_D,pcis->vec2_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
        ierr = VecScatterEnd(pcis->N_to_D,pcis->vec2_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
        if (!pcbddc->switch_static_change) {
          ierr = MatMultTranspose(matis->A,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
        } else {
          ierr = MatMult(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
          ierr = MatMultTranspose(matis->A,pcis->vec2_N,pcis->vec1_N);CHKERRQ(ierr);
          ierr = MatMultTranspose(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
        }
        ierr = VecScatterBegin(pcis->N_to_D,pcis->vec2_N,pcis->vec1_D,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
        ierr = VecScatterEnd(pcis->N_to_D,pcis->vec2_N,pcis->vec1_D,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
        ierr = VecScatterBegin(pcis->N_to_B,pcis->vec2_N,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
        ierr = VecScatterEnd(pcis->N_to_B,pcis->vec2_N,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
      } else {
        ierr = MatMultTranspose(pcis->A_IB,pcis->vec2_D,pcis->vec1_B);CHKERRQ(ierr);
      }
    } else {
      ierr = VecSet(pcis->vec1_B,zero);CHKERRQ(ierr);
    }
    ierr = VecScatterBegin(pcis->global_to_B,pcis->vec1_B,z,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
    ierr = VecScatterEnd(pcis->global_to_B,pcis->vec1_B,z,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
    ierr = PCBDDCScalingRestriction(pc,z,pcis->vec1_B);CHKERRQ(ierr);
  } else {
    ierr = PCBDDCScalingRestriction(pc,r,pcis->vec1_B);CHKERRQ(ierr);
  }

  /* Apply interface preconditioner
     input/output vecs: pcis->vec1_B and pcis->vec1_D */
  ierr = PCBDDCApplyInterfacePreconditioner(pc,PETSC_TRUE);CHKERRQ(ierr);

  /* Apply transpose of partition of unity operator */
  ierr = PCBDDCScalingExtension(pc,pcis->vec1_B,z);CHKERRQ(ierr);

  /* Second Dirichlet solve and assembling of output */
  ierr = VecScatterBegin(pcis->global_to_B,z,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
  ierr = VecScatterEnd(pcis->global_to_B,z,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
  if (n_B) {
    if (pcbddc->switch_static) {
      Mat_IS *matis = (Mat_IS*)(pc->mat->data);

      ierr = VecScatterBegin(pcis->N_to_D,pcis->vec1_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
      ierr = VecScatterEnd(pcis->N_to_D,pcis->vec1_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
      ierr = VecScatterBegin(pcis->N_to_B,pcis->vec1_B,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
      ierr = VecScatterEnd(pcis->N_to_B,pcis->vec1_B,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
      if (!pcbddc->switch_static_change) {
        ierr = MatMultTranspose(matis->A,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
      } else {
        ierr = MatMult(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
        ierr = MatMultTranspose(matis->A,pcis->vec2_N,pcis->vec1_N);CHKERRQ(ierr);
        ierr = MatMultTranspose(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
      }
      ierr = VecScatterBegin(pcis->N_to_D,pcis->vec2_N,pcis->vec3_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
      ierr = VecScatterEnd(pcis->N_to_D,pcis->vec2_N,pcis->vec3_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
    } else {
      ierr = MatMultTranspose(pcis->A_BI,pcis->vec1_B,pcis->vec3_D);CHKERRQ(ierr);
    }
  } else if (pcbddc->switch_static) { /* n_B is zero */
    Mat_IS *matis = (Mat_IS*)(pc->mat->data);

    if (!pcbddc->switch_static_change) {
      ierr = MatMultTranspose(matis->A,pcis->vec1_D,pcis->vec3_D);CHKERRQ(ierr);
    } else {
      ierr = MatMult(pcbddc->switch_static_change,pcis->vec1_D,pcis->vec1_N);CHKERRQ(ierr);
      ierr = MatMultTranspose(matis->A,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr);
      ierr = MatMultTranspose(pcbddc->switch_static_change,pcis->vec2_N,pcis->vec3_D);CHKERRQ(ierr);
    }
  }
  ierr = KSPSolveTranspose(pcbddc->ksp_D,pcis->vec3_D,pcis->vec4_D);CHKERRQ(ierr);
  if (!pcbddc->exact_dirichlet_trick_app && !pcbddc->benign_apply_coarse_only) {
    if (pcbddc->switch_static) {
      ierr = VecAXPBYPCZ(pcis->vec2_D,m_one,one,m_one,pcis->vec4_D,pcis->vec1_D);CHKERRQ(ierr);
    } else {
      ierr = VecAXPBY(pcis->vec2_D,m_one,m_one,pcis->vec4_D);CHKERRQ(ierr);
    }
    ierr = VecScatterBegin(pcis->global_to_D,pcis->vec2_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
    ierr = VecScatterEnd(pcis->global_to_D,pcis->vec2_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
  } else {
    if (pcbddc->switch_static) {
      ierr = VecAXPBY(pcis->vec4_D,one,m_one,pcis->vec1_D);CHKERRQ(ierr);
    } else {
      ierr = VecScale(pcis->vec4_D,m_one);CHKERRQ(ierr);
    }
    ierr = VecScatterBegin(pcis->global_to_D,pcis->vec4_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
    ierr = VecScatterEnd(pcis->global_to_D,pcis->vec4_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
  }
  if (pcbddc->benign_have_null) { /* set p0 (computed in PCBDDCApplyInterface) */
    ierr = PCBDDCBenignGetOrSetP0(pc,z,PETSC_FALSE);CHKERRQ(ierr);
  }
  if (pcbddc->ChangeOfBasisMatrix) {
    Vec swap;

    swap = r;
    r = pcbddc->work_change;
    pcbddc->work_change = swap;
    ierr = VecCopy(z,pcbddc->work_change);CHKERRQ(ierr);
    ierr = MatMult(pcbddc->ChangeOfBasisMatrix,pcbddc->work_change,z);CHKERRQ(ierr);
  }
  PetscFunctionReturn(0);
}
/* -------------------------------------------------------------------------- */

#undef __FUNCT__
#define __FUNCT__ "PCDestroy_BDDC"
PetscErrorCode PCDestroy_BDDC(PC pc)
{
  PC_BDDC        *pcbddc = (PC_BDDC*)pc->data;
  PetscErrorCode ierr;

  PetscFunctionBegin;
  /* free BDDC custom data  */
  ierr = PCBDDCResetCustomization(pc);CHKERRQ(ierr);
  /* destroy objects related to topography */
  ierr = PCBDDCResetTopography(pc);CHKERRQ(ierr);
  /* free allocated graph structure */
  ierr = PetscFree(pcbddc->mat_graph);CHKERRQ(ierr);
  /* free allocated sub schurs structure */
  ierr = PetscFree(pcbddc->sub_schurs);CHKERRQ(ierr);
  /* destroy objects for scaling operator */
  ierr = PCBDDCScalingDestroy(pc);CHKERRQ(ierr);
  ierr = PetscFree(pcbddc->deluxe_ctx);CHKERRQ(ierr);
  /* free solvers stuff */
  ierr = PCBDDCResetSolvers(pc);CHKERRQ(ierr);
  /* free global vectors needed in presolve */
  ierr = VecDestroy(&pcbddc->temp_solution);CHKERRQ(ierr);
  ierr = VecDestroy(&pcbddc->original_rhs);CHKERRQ(ierr);
  /* free data created by PCIS */
  ierr = PCISDestroy(pc);CHKERRQ(ierr);
  /* remove functions */
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDivergenceMat_C",NULL);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetChangeOfBasisMat_C",NULL);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetPrimalVerticesLocalIS_C",NULL);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetPrimalVerticesIS_C",NULL);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetCoarseningRatio_C",NULL);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetLevel_C",NULL);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetUseExactDirichlet_C",NULL);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetLevels_C",NULL);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDirichletBoundaries_C",NULL);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDirichletBoundariesLocal_C",NULL);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetNeumannBoundaries_C",NULL);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetNeumannBoundariesLocal_C",NULL);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetDirichletBoundaries_C",NULL);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetDirichletBoundariesLocal_C",NULL);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetNeumannBoundaries_C",NULL);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetNeumannBoundariesLocal_C",NULL);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDofsSplitting_C",NULL);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDofsSplittingLocal_C",NULL);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetLocalAdjacencyGraph_C",NULL);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCCreateFETIDPOperators_C",NULL);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCMatFETIDPGetRHS_C",NULL);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCMatFETIDPGetSolution_C",NULL);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCPreSolveChangeRHS_C",NULL);CHKERRQ(ierr);
  /* Free the private data structure */
  ierr = PetscFree(pc->data);CHKERRQ(ierr);
  PetscFunctionReturn(0);
}
/* -------------------------------------------------------------------------- */

#undef __FUNCT__
#define __FUNCT__ "PCPreSolveChangeRHS_BDDC"
static PetscErrorCode PCPreSolveChangeRHS_BDDC(PC pc, PetscBool* change)
{
  PetscFunctionBegin;
  *change = PETSC_TRUE;
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "PCBDDCMatFETIDPGetRHS_BDDC"
static PetscErrorCode PCBDDCMatFETIDPGetRHS_BDDC(Mat fetidp_mat, Vec standard_rhs, Vec fetidp_flux_rhs)
{
  FETIDPMat_ctx  mat_ctx;
  Vec            work;
  PC_IS*         pcis;
  PC_BDDC*       pcbddc;
  PetscErrorCode ierr;

  PetscFunctionBegin;
  ierr = MatShellGetContext(fetidp_mat,&mat_ctx);CHKERRQ(ierr);
  pcis = (PC_IS*)mat_ctx->pc->data;
  pcbddc = (PC_BDDC*)mat_ctx->pc->data;

  /*
     change of basis for physical rhs if needed
     It also changes the rhs in case of dirichlet boundaries
  */
  if (!pcbddc->original_rhs) {
    ierr = VecDuplicate(pcis->vec1_global,&pcbddc->original_rhs);CHKERRQ(ierr);
  }
  ierr = VecCopy(standard_rhs,pcbddc->original_rhs);CHKERRQ(ierr);
  ierr = PCPreSolve_BDDC(mat_ctx->pc,NULL,pcbddc->original_rhs,NULL);CHKERRQ(ierr);
  if (pcbddc->ChangeOfBasisMatrix) {
    ierr = MatMultTranspose(pcbddc->ChangeOfBasisMatrix,pcbddc->original_rhs,pcbddc->work_change);CHKERRQ(ierr);
    work = pcbddc->work_change;
   } else {
    work = pcbddc->original_rhs;
  }
  /* store vectors for computation of fetidp final solution */
  ierr = VecScatterBegin(pcis->global_to_D,work,mat_ctx->temp_solution_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
  ierr = VecScatterEnd(pcis->global_to_D,work,mat_ctx->temp_solution_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
  /* scale rhs since it should be unassembled */
  /* TODO use counter scaling? (also below) */
  ierr = VecScatterBegin(pcis->global_to_B,work,mat_ctx->temp_solution_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
  ierr = VecScatterEnd(pcis->global_to_B,work,mat_ctx->temp_solution_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
  /* Apply partition of unity */
  ierr = VecPointwiseMult(mat_ctx->temp_solution_B,pcis->D,mat_ctx->temp_solution_B);CHKERRQ(ierr);
  /* ierr = PCBDDCScalingRestriction(mat_ctx->pc,work,mat_ctx->temp_solution_B);CHKERRQ(ierr); */
  if (!pcbddc->switch_static) {
    /* compute partially subassembled Schur complement right-hand side */
    ierr = KSPSolve(pcbddc->ksp_D,mat_ctx->temp_solution_D,pcis->vec1_D);CHKERRQ(ierr);
    ierr = MatMult(pcis->A_BI,pcis->vec1_D,pcis->vec1_B);CHKERRQ(ierr);
    ierr = VecAXPY(mat_ctx->temp_solution_B,-1.0,pcis->vec1_B);CHKERRQ(ierr);
    ierr = VecSet(work,0.0);CHKERRQ(ierr);
    ierr = VecScatterBegin(pcis->global_to_B,mat_ctx->temp_solution_B,work,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
    ierr = VecScatterEnd(pcis->global_to_B,mat_ctx->temp_solution_B,work,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
    /* ierr = PCBDDCScalingRestriction(mat_ctx->pc,work,mat_ctx->temp_solution_B);CHKERRQ(ierr); */
    ierr = VecScatterBegin(pcis->global_to_B,work,mat_ctx->temp_solution_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
    ierr = VecScatterEnd(pcis->global_to_B,work,mat_ctx->temp_solution_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
    ierr = VecPointwiseMult(mat_ctx->temp_solution_B,pcis->D,mat_ctx->temp_solution_B);CHKERRQ(ierr);
  }
  /* BDDC rhs */
  ierr = VecCopy(mat_ctx->temp_solution_B,pcis->vec1_B);CHKERRQ(ierr);
  if (pcbddc->switch_static) {
    ierr = VecCopy(mat_ctx->temp_solution_D,pcis->vec1_D);CHKERRQ(ierr);
  }
  ierr = PetscMemzero(pcbddc->benign_p0,pcbddc->benign_n*sizeof(PetscScalar));CHKERRQ(ierr);
  /* apply BDDC */
  ierr = PCBDDCApplyInterfacePreconditioner(mat_ctx->pc,PETSC_FALSE);CHKERRQ(ierr);
  ierr = PetscMemzero(pcbddc->benign_p0,pcbddc->benign_n*sizeof(PetscScalar));CHKERRQ(ierr);
  /* Application of B_delta and assembling of rhs for fetidp fluxes */
  ierr = VecSet(fetidp_flux_rhs,0.0);CHKERRQ(ierr);
  ierr = MatMult(mat_ctx->B_delta,pcis->vec1_B,mat_ctx->lambda_local);CHKERRQ(ierr);
  ierr = VecScatterBegin(mat_ctx->l2g_lambda,mat_ctx->lambda_local,fetidp_flux_rhs,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
  ierr = VecScatterEnd(mat_ctx->l2g_lambda,mat_ctx->lambda_local,fetidp_flux_rhs,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "PCBDDCMatFETIDPGetRHS"
/*@
 PCBDDCMatFETIDPGetRHS - Compute the right-hand side for FETI-DP linear system using the physical right-hand side

   Collective

   Input Parameters:
+  fetidp_mat      - the FETI-DP matrix object obtained by a call to PCBDDCCreateFETIDPOperators
-  standard_rhs    - the right-hand side of the original linear system

   Output Parameters:
.  fetidp_flux_rhs - the right-hand side for the FETI-DP linear system

   Level: developer

   Notes:

.seealso: PCBDDC, PCBDDCCreateFETIDPOperators, PCBDDCMatFETIDPGetSolution
@*/
PetscErrorCode PCBDDCMatFETIDPGetRHS(Mat fetidp_mat, Vec standard_rhs, Vec fetidp_flux_rhs)
{
  FETIDPMat_ctx  mat_ctx;
  PetscErrorCode ierr;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(fetidp_mat,MAT_CLASSID,1);
  PetscValidHeaderSpecific(standard_rhs,VEC_CLASSID,2);
  PetscValidHeaderSpecific(fetidp_flux_rhs,VEC_CLASSID,3);
  ierr = MatShellGetContext(fetidp_mat,&mat_ctx);CHKERRQ(ierr);
  ierr = PetscUseMethod(mat_ctx->pc,"PCBDDCMatFETIDPGetRHS_C",(Mat,Vec,Vec),(fetidp_mat,standard_rhs,fetidp_flux_rhs));CHKERRQ(ierr);
  PetscFunctionReturn(0);
}
/* -------------------------------------------------------------------------- */

#undef __FUNCT__
#define __FUNCT__ "PCBDDCMatFETIDPGetSolution_BDDC"
static PetscErrorCode PCBDDCMatFETIDPGetSolution_BDDC(Mat fetidp_mat, Vec fetidp_flux_sol, Vec standard_sol)
{
  FETIDPMat_ctx  mat_ctx;
  PC_IS*         pcis;
  PC_BDDC*       pcbddc;
  PetscErrorCode ierr;

  PetscFunctionBegin;
  ierr = MatShellGetContext(fetidp_mat,&mat_ctx);CHKERRQ(ierr);
  pcis = (PC_IS*)mat_ctx->pc->data;
  pcbddc = (PC_BDDC*)mat_ctx->pc->data;

  /* apply B_delta^T */
  ierr = VecScatterBegin(mat_ctx->l2g_lambda,fetidp_flux_sol,mat_ctx->lambda_local,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
  ierr = VecScatterEnd(mat_ctx->l2g_lambda,fetidp_flux_sol,mat_ctx->lambda_local,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
  ierr = MatMultTranspose(mat_ctx->B_delta,mat_ctx->lambda_local,pcis->vec1_B);CHKERRQ(ierr);
  /* compute rhs for BDDC application */
  ierr = VecAYPX(pcis->vec1_B,-1.0,mat_ctx->temp_solution_B);CHKERRQ(ierr);
  if (pcbddc->switch_static) {
    ierr = VecCopy(mat_ctx->temp_solution_D,pcis->vec1_D);CHKERRQ(ierr);
  }
  ierr = PetscMemzero(pcbddc->benign_p0,pcbddc->benign_n*sizeof(PetscScalar));CHKERRQ(ierr);
  /* apply BDDC */
  ierr = PCBDDCApplyInterfacePreconditioner(mat_ctx->pc,PETSC_FALSE);CHKERRQ(ierr);
  /* put values into standard global vector */
  ierr = VecScatterBegin(pcis->global_to_B,pcis->vec1_B,standard_sol,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
  ierr = VecScatterEnd(pcis->global_to_B,pcis->vec1_B,standard_sol,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
  if (!pcbddc->switch_static) {
    /* compute values into the interior if solved for the partially subassembled Schur complement */
    ierr = MatMult(pcis->A_IB,pcis->vec1_B,pcis->vec1_D);CHKERRQ(ierr);
    ierr = VecAYPX(pcis->vec1_D,-1.0,mat_ctx->temp_solution_D);CHKERRQ(ierr);
    ierr = KSPSolve(pcbddc->ksp_D,pcis->vec1_D,pcis->vec1_D);CHKERRQ(ierr);
  }
  ierr = VecScatterBegin(pcis->global_to_D,pcis->vec1_D,standard_sol,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
  ierr = VecScatterEnd(pcis->global_to_D,pcis->vec1_D,standard_sol,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
  /* add p0 solution to final solution */
  ierr = PCBDDCBenignGetOrSetP0(mat_ctx->pc,standard_sol,PETSC_FALSE);CHKERRQ(ierr);
  if (pcbddc->ChangeOfBasisMatrix) {
    Vec v2;
    ierr = VecDuplicate(standard_sol,&v2);CHKERRQ(ierr);
    ierr = MatMult(pcbddc->ChangeOfBasisMatrix,standard_sol,v2);CHKERRQ(ierr);
    ierr = VecCopy(v2,standard_sol);CHKERRQ(ierr);
    ierr = VecDestroy(&v2);CHKERRQ(ierr);
  }
  ierr = PCPostSolve_BDDC(mat_ctx->pc,NULL,NULL,standard_sol);CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "PCBDDCMatFETIDPGetSolution"
/*@
 PCBDDCMatFETIDPGetSolution - Compute the physical solution using the solution of the FETI-DP linear system

   Collective

   Input Parameters:
+  fetidp_mat      - the FETI-DP matrix obtained by a call to PCBDDCCreateFETIDPOperators
-  fetidp_flux_sol - the solution of the FETI-DP linear system

   Output Parameters:
.  standard_sol    - the solution defined on the physical domain

   Level: developer

   Notes:

.seealso: PCBDDC, PCBDDCCreateFETIDPOperators, PCBDDCMatFETIDPGetRHS
@*/
PetscErrorCode PCBDDCMatFETIDPGetSolution(Mat fetidp_mat, Vec fetidp_flux_sol, Vec standard_sol)
{
  FETIDPMat_ctx  mat_ctx;
  PetscErrorCode ierr;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(fetidp_mat,MAT_CLASSID,1);
  PetscValidHeaderSpecific(fetidp_flux_sol,VEC_CLASSID,2);
  PetscValidHeaderSpecific(standard_sol,VEC_CLASSID,3);
  ierr = MatShellGetContext(fetidp_mat,&mat_ctx);CHKERRQ(ierr);
  ierr = PetscUseMethod(mat_ctx->pc,"PCBDDCMatFETIDPGetSolution_C",(Mat,Vec,Vec),(fetidp_mat,fetidp_flux_sol,standard_sol));CHKERRQ(ierr);
  PetscFunctionReturn(0);
}
/* -------------------------------------------------------------------------- */

extern PetscErrorCode FETIDPMatMult(Mat,Vec,Vec);
extern PetscErrorCode FETIDPMatMultTranspose(Mat,Vec,Vec);
extern PetscErrorCode PCBDDCDestroyFETIDPMat(Mat);
extern PetscErrorCode FETIDPPCApply(PC,Vec,Vec);
extern PetscErrorCode FETIDPPCApplyTranspose(PC,Vec,Vec);
extern PetscErrorCode PCBDDCDestroyFETIDPPC(PC);

#undef __FUNCT__
#define __FUNCT__ "PCBDDCCreateFETIDPOperators_BDDC"
static PetscErrorCode PCBDDCCreateFETIDPOperators_BDDC(PC pc, PetscBool fully_redundant, Mat *fetidp_mat, PC *fetidp_pc)
{

  FETIDPMat_ctx  fetidpmat_ctx;
  Mat            newmat;
  FETIDPPC_ctx   fetidppc_ctx;
  PC             newpc;
  MPI_Comm       comm;
  PetscErrorCode ierr;

  PetscFunctionBegin;
  ierr = PetscObjectGetComm((PetscObject)pc,&comm);CHKERRQ(ierr);
  /* FETIDP linear matrix */
  ierr = PCBDDCCreateFETIDPMatContext(pc,&fetidpmat_ctx);CHKERRQ(ierr);
  fetidpmat_ctx->fully_redundant = fully_redundant;
  ierr = PCBDDCSetupFETIDPMatContext(fetidpmat_ctx);CHKERRQ(ierr);
  ierr = MatCreateShell(comm,PETSC_DECIDE,PETSC_DECIDE,fetidpmat_ctx->n_lambda,fetidpmat_ctx->n_lambda,fetidpmat_ctx,&newmat);CHKERRQ(ierr);
  ierr = MatShellSetOperation(newmat,MATOP_MULT,(void (*)(void))FETIDPMatMult);CHKERRQ(ierr);
  ierr = MatShellSetOperation(newmat,MATOP_MULT_TRANSPOSE,(void (*)(void))FETIDPMatMultTranspose);CHKERRQ(ierr);
  ierr = MatShellSetOperation(newmat,MATOP_DESTROY,(void (*)(void))PCBDDCDestroyFETIDPMat);CHKERRQ(ierr);
  ierr = MatSetUp(newmat);CHKERRQ(ierr);
  /* FETIDP preconditioner */
  ierr = PCBDDCCreateFETIDPPCContext(pc,&fetidppc_ctx);CHKERRQ(ierr);
  ierr = PCBDDCSetupFETIDPPCContext(newmat,fetidppc_ctx);CHKERRQ(ierr);
  ierr = PCCreate(comm,&newpc);CHKERRQ(ierr);
  ierr = PCSetType(newpc,PCSHELL);CHKERRQ(ierr);
  ierr = PCShellSetContext(newpc,fetidppc_ctx);CHKERRQ(ierr);
  ierr = PCShellSetApply(newpc,FETIDPPCApply);CHKERRQ(ierr);
  ierr = PCShellSetApplyTranspose(newpc,FETIDPPCApplyTranspose);CHKERRQ(ierr);
  ierr = PCShellSetDestroy(newpc,PCBDDCDestroyFETIDPPC);CHKERRQ(ierr);
  ierr = PCSetOperators(newpc,newmat,newmat);CHKERRQ(ierr);
  ierr = PCSetUp(newpc);CHKERRQ(ierr);
  /* return pointers for objects created */
  *fetidp_mat=newmat;
  *fetidp_pc=newpc;
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "PCBDDCCreateFETIDPOperators"
/*@
 PCBDDCCreateFETIDPOperators - Create FETI-DP operators

   Collective

   Input Parameters:
+  pc - the BDDC preconditioning context (setup should have been called before)
-  fully_redundant - true for a fully redundant set of Lagrange multipliers

   Output Parameters:
+  fetidp_mat - shell FETI-DP matrix object
-  fetidp_pc  - shell Dirichlet preconditioner for FETI-DP matrix

   Level: developer

   Notes:
     Currently the only operations provided for FETI-DP matrix are MatMult and MatMultTranspose

.seealso: PCBDDC, PCBDDCMatFETIDPGetRHS, PCBDDCMatFETIDPGetSolution
@*/
PetscErrorCode PCBDDCCreateFETIDPOperators(PC pc, PetscBool fully_redundant, Mat *fetidp_mat, PC *fetidp_pc)
{
  PetscErrorCode ierr;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(pc,PC_CLASSID,1);
  if (pc->setupcalled) {
    ierr = PetscUseMethod(pc,"PCBDDCCreateFETIDPOperators_C",(PC,PetscBool,Mat*,PC*),(pc,fully_redundant,fetidp_mat,fetidp_pc));CHKERRQ(ierr);
  } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"You must call PCSetup_BDDC() first \n");
  PetscFunctionReturn(0);
}
/* -------------------------------------------------------------------------- */
/*MC
   PCBDDC - Balancing Domain Decomposition by Constraints.

   An implementation of the BDDC preconditioner based on

.vb
   [1] C. R. Dohrmann. "An approximate BDDC preconditioner", Numerical Linear Algebra with Applications Volume 14, Issue 2, pages 149-168, March 2007
   [2] A. Klawonn and O. B. Widlund. "Dual-Primal FETI Methods for Linear Elasticity", http://cs.nyu.edu/csweb/Research/TechReports/TR2004-855/TR2004-855.pdf
   [3] J. Mandel, B. Sousedik, C. R. Dohrmann. "Multispace and Multilevel BDDC", http://arxiv.org/abs/0712.3977
   [4] C. Pechstein and C. R. Dohrmann. "Modern domain decomposition methods BDDC, deluxe scaling, and an algebraic approach", Seminar talk, Linz, December 2013, http://people.ricam.oeaw.ac.at/c.pechstein/pechstein-bddc2013.pdf
.ve

   The matrix to be preconditioned (Pmat) must be of type MATIS.

   Currently works with MATIS matrices with local matrices of type MATSEQAIJ, MATSEQBAIJ or MATSEQSBAIJ, either with real or complex numbers.

   It also works with unsymmetric and indefinite problems.

   Unlike 'conventional' interface preconditioners, PCBDDC iterates over all degrees of freedom, not just those on the interface. This allows the use of approximate solvers on the subdomains.

   Approximate local solvers are automatically adapted (see [1]) if the user has attached a nullspace object to the subdomain matrices, and informed BDDC of using approximate solvers (via the command line).

   Boundary nodes are split in vertices, edges and faces classes using information from the local to global mapping of dofs and the local connectivity graph of nodes. The latter can be customized by using PCBDDCSetLocalAdjacencyGraph()
   Additional information on dofs can be provided by using PCBDDCSetDofsSplitting(), PCBDDCSetDirichletBoundaries(), PCBDDCSetNeumannBoundaries(), and PCBDDCSetPrimalVerticesIS() and their local counterparts.

   Constraints can be customized by attaching a MatNullSpace object to the MATIS matrix via MatSetNearNullSpace(). Non-singular modes are retained via SVD.

   Change of basis is performed similarly to [2] when requested. When more than one constraint is present on a single connected component (i.e. an edge or a face), a robust method based on local QR factorizations is used.
   User defined change of basis can be passed to PCBDDC by using PCBDDCSetChangeOfBasisMat()

   The PETSc implementation also supports multilevel BDDC [3]. Coarse grids are partitioned using a MatPartitioning object.

   Adaptive selection of primal constraints [4] is supported for SPD systems with high-contrast in the coefficients if MUMPS or MKL_PARDISO are present. Future versions of the code will also consider using PASTIX.

   An experimental interface to the FETI-DP method is available. FETI-DP operators could be created using PCBDDCCreateFETIDPOperators(). A stand-alone class for the FETI-DP method will be provided in the next releases.
   Deluxe scaling is not supported yet for FETI-DP.

   Options Database Keys (some of them, run with -h for a complete list):

.    -pc_bddc_use_vertices <true> - use or not vertices in primal space
.    -pc_bddc_use_edges <true> - use or not edges in primal space
.    -pc_bddc_use_faces <false> - use or not faces in primal space
.    -pc_bddc_symmetric <true> - symmetric computation of primal basis functions. Specify false for unsymmetric problems
.    -pc_bddc_use_change_of_basis <false> - use change of basis approach (on edges only)
.    -pc_bddc_use_change_on_faces <false> - use change of basis approach on faces if change of basis has been requested
.    -pc_bddc_switch_static <false> - switches from M_2 (default) to M_3 operator (see reference article [1])
.    -pc_bddc_levels <0> - maximum number of levels for multilevel
.    -pc_bddc_coarsening_ratio <8> - number of subdomains which will be aggregated together at the coarser level (e.g. H/h ratio at the coarser level, significative only in the multilevel case)
.    -pc_bddc_redistribute <0> - size of a subset of processors where the coarse problem will be remapped (the value is ignored if not at the coarsest level)
.    -pc_bddc_use_deluxe_scaling <false> - use deluxe scaling
.    -pc_bddc_schur_layers <-1> - select the economic version of deluxe scaling by specifying the number of layers (-1 corresponds to the original deluxe scaling)
.    -pc_bddc_adaptive_threshold <0.0> - when a value greater than one is specified, adaptive selection of constraints is performed on edges and faces (requires deluxe scaling and MUMPS or MKL_PARDISO installed)
-    -pc_bddc_check_level <0> - set verbosity level of debugging output

   Options for Dirichlet, Neumann or coarse solver can be set with
.vb
      -pc_bddc_dirichlet_
      -pc_bddc_neumann_
      -pc_bddc_coarse_
.ve
   e.g -pc_bddc_dirichlet_ksp_type richardson -pc_bddc_dirichlet_pc_type gamg. PCBDDC uses by default KPSPREONLY and PCLU.

   When using a multilevel approach, solvers' options at the N-th level (N > 1) can be specified as
.vb
      -pc_bddc_dirichlet_lN_
      -pc_bddc_neumann_lN_
      -pc_bddc_coarse_lN_
.ve
   Note that level number ranges from the finest (0) to the coarsest (N).
   In order to specify options for the BDDC operators at the coarser levels (and not for the solvers), prepend -pc_bddc_coarse_ or -pc_bddc_coarse_l to the option, e.g.
.vb
     -pc_bddc_coarse_pc_bddc_adaptive_threshold 5 -pc_bddc_coarse_l1_pc_bddc_redistribute 3
.ve
   will use a threshold of 5 for constraints' selection at the first coarse level and will redistribute the coarse problem of the first coarse level on 3 processors

   Level: intermediate

   Developer notes:

   Contributed by Stefano Zampini

.seealso:  PCCreate(), PCSetType(), PCType (for list of available types), PC,  MATIS
M*/

#undef __FUNCT__
#define __FUNCT__ "PCCreate_BDDC"
PETSC_EXTERN PetscErrorCode PCCreate_BDDC(PC pc)
{
  PetscErrorCode      ierr;
  PC_BDDC             *pcbddc;

  PetscFunctionBegin;
  /* Creates the private data structure for this preconditioner and attach it to the PC object. */
  ierr      = PetscNewLog(pc,&pcbddc);CHKERRQ(ierr);
  pc->data  = (void*)pcbddc;

  /* create PCIS data structure */
  ierr = PCISCreate(pc);CHKERRQ(ierr);

  /* BDDC customization */
  pcbddc->use_local_adj       = PETSC_TRUE;
  pcbddc->use_vertices        = PETSC_TRUE;
  pcbddc->use_edges           = PETSC_TRUE;
  pcbddc->use_faces           = PETSC_FALSE;
  pcbddc->use_change_of_basis = PETSC_FALSE;
  pcbddc->use_change_on_faces = PETSC_FALSE;
  pcbddc->switch_static       = PETSC_FALSE;
  pcbddc->use_nnsp_true       = PETSC_FALSE;
  pcbddc->use_qr_single       = PETSC_FALSE;
  pcbddc->symmetric_primal    = PETSC_TRUE;
  pcbddc->benign_saddle_point = PETSC_FALSE;
  pcbddc->benign_have_null    = PETSC_FALSE;
  pcbddc->vertex_size         = 1;
  pcbddc->dbg_flag            = 0;
  /* private */
  pcbddc->local_primal_size          = 0;
  pcbddc->local_primal_size_cc       = 0;
  pcbddc->local_primal_ref_node      = 0;
  pcbddc->local_primal_ref_mult      = 0;
  pcbddc->n_vertices                 = 0;
  pcbddc->primal_indices_local_idxs  = 0;
  pcbddc->recompute_topography       = PETSC_FALSE;
  pcbddc->coarse_size                = -1;
  pcbddc->new_primal_space           = PETSC_FALSE;
  pcbddc->new_primal_space_local     = PETSC_FALSE;
  pcbddc->global_primal_indices      = 0;
  pcbddc->onearnullspace             = 0;
  pcbddc->onearnullvecs_state        = 0;
  pcbddc->user_primal_vertices       = 0;
  pcbddc->user_primal_vertices_local = 0;
  pcbddc->temp_solution              = 0;
  pcbddc->original_rhs               = 0;
  pcbddc->local_mat                  = 0;
  pcbddc->ChangeOfBasisMatrix        = 0;
  pcbddc->user_ChangeOfBasisMatrix   = 0;
  pcbddc->coarse_vec                 = 0;
  pcbddc->coarse_ksp                 = 0;
  pcbddc->coarse_phi_B               = 0;
  pcbddc->coarse_phi_D               = 0;
  pcbddc->coarse_psi_B               = 0;
  pcbddc->coarse_psi_D               = 0;
  pcbddc->vec1_P                     = 0;
  pcbddc->vec1_R                     = 0;
  pcbddc->vec2_R                     = 0;
  pcbddc->local_auxmat1              = 0;
  pcbddc->local_auxmat2              = 0;
  pcbddc->R_to_B                     = 0;
  pcbddc->R_to_D                     = 0;
  pcbddc->ksp_D                      = 0;
  pcbddc->ksp_R                      = 0;
  pcbddc->NeumannBoundaries          = 0;
  pcbddc->NeumannBoundariesLocal     = 0;
  pcbddc->DirichletBoundaries        = 0;
  pcbddc->DirichletBoundariesLocal   = 0;
  pcbddc->user_provided_isfordofs    = PETSC_FALSE;
  pcbddc->n_ISForDofs                = 0;
  pcbddc->n_ISForDofsLocal           = 0;
  pcbddc->ISForDofs                  = 0;
  pcbddc->ISForDofsLocal             = 0;
  pcbddc->ConstraintMatrix           = 0;
  pcbddc->use_exact_dirichlet_trick  = PETSC_TRUE;
  pcbddc->exact_dirichlet_trick_app  = PETSC_FALSE;
  pcbddc->coarse_loc_to_glob         = 0;
  pcbddc->coarsening_ratio           = 8;
  pcbddc->coarse_adj_red             = 0;
  pcbddc->current_level              = 0;
  pcbddc->max_levels                 = 0;
  pcbddc->use_coarse_estimates       = PETSC_FALSE;
  pcbddc->coarse_eqs_per_proc        = 1;
  pcbddc->coarse_subassembling       = 0;
  pcbddc->detect_disconnected        = PETSC_FALSE;
  pcbddc->n_local_subs               = 0;
  pcbddc->local_subs                 = NULL;

  /* benign subspace trick */
  pcbddc->benign_change              = 0;
  pcbddc->benign_compute_correction  = PETSC_TRUE;
  pcbddc->benign_vec                 = 0;
  pcbddc->benign_original_mat        = 0;
  pcbddc->benign_sf                  = 0;
  pcbddc->benign_B0                  = 0;
  pcbddc->benign_n                   = 0;
  pcbddc->benign_p0                  = NULL;
  pcbddc->benign_p0_lidx             = NULL;
  pcbddc->benign_p0_gidx             = NULL;
  pcbddc->benign_null                = PETSC_FALSE;

  /* create local graph structure */
  ierr = PCBDDCGraphCreate(&pcbddc->mat_graph);CHKERRQ(ierr);

  /* scaling */
  pcbddc->work_scaling          = 0;
  pcbddc->use_deluxe_scaling    = PETSC_FALSE;

  /* sub schurs options */
  pcbddc->sub_schurs_rebuild     = PETSC_FALSE;
  pcbddc->sub_schurs_layers      = -1;
  pcbddc->sub_schurs_use_useradj = PETSC_FALSE;

  pcbddc->computed_rowadj = PETSC_FALSE;

  /* adaptivity */
  pcbddc->adaptive_threshold      = 0.0;
  pcbddc->adaptive_nmax           = 0;
  pcbddc->adaptive_nmin           = 0;

  /* function pointers */
  pc->ops->apply               = PCApply_BDDC;
  pc->ops->applytranspose      = PCApplyTranspose_BDDC;
  pc->ops->setup               = PCSetUp_BDDC;
  pc->ops->destroy             = PCDestroy_BDDC;
  pc->ops->setfromoptions      = PCSetFromOptions_BDDC;
  pc->ops->view                = PCView_BDDC;
  pc->ops->applyrichardson     = 0;
  pc->ops->applysymmetricleft  = 0;
  pc->ops->applysymmetricright = 0;
  pc->ops->presolve            = PCPreSolve_BDDC;
  pc->ops->postsolve           = PCPostSolve_BDDC;

  /* composing function */
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDivergenceMat_C",PCBDDCSetDivergenceMat_BDDC);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetChangeOfBasisMat_C",PCBDDCSetChangeOfBasisMat_BDDC);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetPrimalVerticesLocalIS_C",PCBDDCSetPrimalVerticesLocalIS_BDDC);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetPrimalVerticesIS_C",PCBDDCSetPrimalVerticesIS_BDDC);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetCoarseningRatio_C",PCBDDCSetCoarseningRatio_BDDC);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetLevel_C",PCBDDCSetLevel_BDDC);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetUseExactDirichlet_C",PCBDDCSetUseExactDirichlet_BDDC);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetLevels_C",PCBDDCSetLevels_BDDC);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDirichletBoundaries_C",PCBDDCSetDirichletBoundaries_BDDC);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDirichletBoundariesLocal_C",PCBDDCSetDirichletBoundariesLocal_BDDC);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetNeumannBoundaries_C",PCBDDCSetNeumannBoundaries_BDDC);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetNeumannBoundariesLocal_C",PCBDDCSetNeumannBoundariesLocal_BDDC);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetDirichletBoundaries_C",PCBDDCGetDirichletBoundaries_BDDC);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetDirichletBoundariesLocal_C",PCBDDCGetDirichletBoundariesLocal_BDDC);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetNeumannBoundaries_C",PCBDDCGetNeumannBoundaries_BDDC);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetNeumannBoundariesLocal_C",PCBDDCGetNeumannBoundariesLocal_BDDC);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDofsSplitting_C",PCBDDCSetDofsSplitting_BDDC);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDofsSplittingLocal_C",PCBDDCSetDofsSplittingLocal_BDDC);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetLocalAdjacencyGraph_C",PCBDDCSetLocalAdjacencyGraph_BDDC);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCCreateFETIDPOperators_C",PCBDDCCreateFETIDPOperators_BDDC);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCMatFETIDPGetRHS_C",PCBDDCMatFETIDPGetRHS_BDDC);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCMatFETIDPGetSolution_C",PCBDDCMatFETIDPGetSolution_BDDC);CHKERRQ(ierr);
  ierr = PetscObjectComposeFunction((PetscObject)pc,"PCPreSolveChangeRHS_C",PCPreSolveChangeRHS_BDDC);CHKERRQ(ierr);
  PetscFunctionReturn(0);
}