1 #include <../src/ksp/pc/impls/bddc/bddc.h> 2 #include <../src/ksp/pc/impls/bddc/bddcprivate.h> 3 #include <petscblaslapack.h> 4 5 static PetscErrorCode PCBDDCMatMultTranspose_Private(Mat A, Vec x, Vec y); 6 static PetscErrorCode PCBDDCMatMult_Private(Mat A, Vec x, Vec y); 7 8 #undef __FUNCT__ 9 #define __FUNCT__ "PCBDDCAdaptiveSelection" 10 PetscErrorCode PCBDDCAdaptiveSelection(PC pc) 11 { 12 PC_BDDC* pcbddc = (PC_BDDC*)pc->data; 13 PCBDDCSubSchurs sub_schurs = pcbddc->sub_schurs; 14 PetscBLASInt B_dummyint,B_neigs,B_ierr,B_lwork; 15 PetscBLASInt *B_iwork,*B_ifail; 16 PetscScalar *work,lwork; 17 PetscScalar *St,*S,*eigv; 18 PetscScalar *Sarray,*Starray; 19 PetscReal *eigs,thresh; 20 PetscInt i,nmax,nmin,nv,cum,mss,cum2,cumarray,maxneigs; 21 PetscBool allocated_S_St; 22 #if defined(PETSC_USE_COMPLEX) 23 PetscReal *rwork; 24 #endif 25 PetscErrorCode ierr; 26 27 PetscFunctionBegin; 28 if (!sub_schurs->use_mumps) { 29 SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Adaptive selection of constraints requires MUMPS"); 30 } 31 32 if (pcbddc->dbg_flag) { 33 ierr = PetscViewerFlush(pcbddc->dbg_viewer);CHKERRQ(ierr); 34 ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"--------------------------------------------------\n");CHKERRQ(ierr); 35 ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"Check adaptive selection of constraints\n");CHKERRQ(ierr); 36 ierr = PetscViewerASCIISynchronizedAllow(pcbddc->dbg_viewer,PETSC_TRUE);CHKERRQ(ierr); 37 } 38 39 if (pcbddc->dbg_flag) { 40 PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"Subdomain %04d cc %d (%d,%d).\n",PetscGlobalRank,sub_schurs->n_subs,sub_schurs->is_hermitian,sub_schurs->is_posdef); 41 } 42 43 if (sub_schurs->n_subs && (!sub_schurs->is_hermitian || !sub_schurs->is_posdef)) { 44 SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Adaptive selection not yet implemented for general matrix pencils (herm %d, posdef %d)\n",sub_schurs->is_hermitian,sub_schurs->is_posdef); 45 } 46 47 /* max size of subsets */ 48 mss = 0; 49 for (i=0;i<sub_schurs->n_subs;i++) { 50 if (PetscBTLookup(sub_schurs->computed_Stilda_subs,i)) { 51 PetscInt subset_size; 52 ierr = ISGetLocalSize(sub_schurs->is_subs[i],&subset_size);CHKERRQ(ierr); 53 mss = PetscMax(mss,subset_size); 54 } 55 } 56 57 /* min/max and threshold */ 58 nmax = pcbddc->adaptive_nmax > 0 ? pcbddc->adaptive_nmax : mss; 59 nmin = pcbddc->adaptive_nmin > 0 ? pcbddc->adaptive_nmin : 0; 60 nmax = PetscMax(nmin,nmax); 61 allocated_S_St = PETSC_FALSE; 62 if (nmin) { 63 allocated_S_St = PETSC_TRUE; 64 } 65 66 /* allocate lapack workspace */ 67 cum = cum2 = 0; 68 maxneigs = 0; 69 for (i=0;i<sub_schurs->n_subs;i++) { 70 if (PetscBTLookup(sub_schurs->computed_Stilda_subs,i)) { 71 PetscInt n,subset_size; 72 73 ierr = ISGetLocalSize(sub_schurs->is_subs[i],&subset_size);CHKERRQ(ierr); 74 n = PetscMin(subset_size,nmax); 75 cum += subset_size*n; 76 cum2 += n; 77 maxneigs = PetscMax(maxneigs,n); 78 } 79 } 80 if (mss) { 81 if (sub_schurs->is_hermitian && sub_schurs->is_posdef) { 82 PetscBLASInt B_itype = 1; 83 PetscBLASInt B_N = mss; 84 PetscReal zero = 0.0; 85 PetscReal eps = 0.0; /* dlamch? */ 86 87 B_lwork = -1; 88 S = NULL; 89 St = NULL; 90 eigs = NULL; 91 eigv = NULL; 92 B_iwork = NULL; 93 B_ifail = NULL; 94 thresh = 1.0; 95 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 96 #if defined(PETSC_USE_COMPLEX) 97 PetscStackCallBLAS("LAPACKsygvx",LAPACKsygvx_(&B_itype,"V","V","L",&B_N,St,&B_N,S,&B_N,&zero,&thresh,&B_dummyint,&B_dummyint,&eps,&B_neigs,eigs,eigv,&B_N,&lwork,&B_lwork,rwork,B_iwork,B_ifail,&B_ierr)); 98 #else 99 PetscStackCallBLAS("LAPACKsygvx",LAPACKsygvx_(&B_itype,"V","V","L",&B_N,St,&B_N,S,&B_N,&zero,&thresh,&B_dummyint,&B_dummyint,&eps,&B_neigs,eigs,eigv,&B_N,&lwork,&B_lwork,B_iwork,B_ifail,&B_ierr)); 100 #endif 101 if (B_ierr != 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in query to SYGVX Lapack routine %d",(int)B_ierr); 102 ierr = PetscFPTrapPop();CHKERRQ(ierr); 103 } else { 104 /* TODO */ 105 } 106 } else { 107 lwork = 0; 108 } 109 110 nv = 0; 111 if (sub_schurs->is_Ej_com && pcbddc->use_vertices) { /* complement of subsets, each entry is a vertex */ 112 ierr = ISGetLocalSize(sub_schurs->is_Ej_com,&nv);CHKERRQ(ierr); 113 } 114 ierr = PetscBLASIntCast((PetscInt)PetscRealPart(lwork),&B_lwork);CHKERRQ(ierr); 115 if (allocated_S_St) { 116 ierr = PetscMalloc2(mss*mss,&S,mss*mss,&St);CHKERRQ(ierr); 117 } 118 ierr = PetscMalloc5(mss*mss,&eigv,mss,&eigs,B_lwork,&work,5*mss,&B_iwork,mss,&B_ifail);CHKERRQ(ierr); 119 #if defined(PETSC_USE_COMPLEX) 120 ierr = PetscMalloc1(7*mss,&rwork);CHKERRQ(ierr); 121 #endif 122 ierr = PetscMalloc4(nv+sub_schurs->n_subs,&pcbddc->adaptive_constraints_n, 123 nv+cum2+1,&pcbddc->adaptive_constraints_ptrs, 124 nv+cum,&pcbddc->adaptive_constraints_idxs, 125 nv+cum,&pcbddc->adaptive_constraints_data);CHKERRQ(ierr); 126 ierr = PetscMemzero(pcbddc->adaptive_constraints_n,(nv+sub_schurs->n_subs)*sizeof(PetscInt));CHKERRQ(ierr); 127 128 maxneigs = 0; 129 cum = cum2 = cumarray = 0; 130 if (sub_schurs->is_Ej_com && pcbddc->use_vertices) { 131 const PetscInt *idxs; 132 133 ierr = ISGetIndices(sub_schurs->is_Ej_com,&idxs);CHKERRQ(ierr); 134 for (cum=0;cum<nv;cum++) { 135 pcbddc->adaptive_constraints_n[cum] = 1; 136 pcbddc->adaptive_constraints_idxs[cum] = idxs[cum]; 137 pcbddc->adaptive_constraints_ptrs[cum] = cum; 138 pcbddc->adaptive_constraints_data[cum] = 1.0; 139 } 140 cum2 = cum; 141 ierr = ISRestoreIndices(sub_schurs->is_Ej_com,&idxs);CHKERRQ(ierr); 142 } 143 144 if (mss) { /* multilevel */ 145 ierr = MatSeqAIJGetArray(sub_schurs->sum_S_Ej_inv_all,&Sarray);CHKERRQ(ierr); 146 ierr = MatSeqAIJGetArray(sub_schurs->sum_S_Ej_tilda_all,&Starray);CHKERRQ(ierr); 147 } 148 149 for (i=0;i<sub_schurs->n_subs;i++) { 150 PetscInt j,subset_size; 151 152 ierr = ISGetLocalSize(sub_schurs->is_subs[i],&subset_size);CHKERRQ(ierr); 153 if (PetscBTLookup(sub_schurs->computed_Stilda_subs,i)) { 154 const PetscInt *idxs; 155 PetscReal infty = PETSC_MAX_REAL; 156 PetscInt eigs_start = 0; 157 PetscBLASInt B_N; 158 159 ierr = PetscBLASIntCast(subset_size,&B_N);CHKERRQ(ierr); 160 if (allocated_S_St) { /* S and S_t should be copied since we could need them later */ 161 if (sub_schurs->is_hermitian) { 162 PetscInt j; 163 for (j=0;j<subset_size;j++) { 164 ierr = PetscMemcpy(S+j*(subset_size+1),Sarray+cumarray+j*(subset_size+1),(subset_size-j)*sizeof(PetscScalar));CHKERRQ(ierr); 165 } 166 for (j=0;j<subset_size;j++) { 167 ierr = PetscMemcpy(St+j*(subset_size+1),Starray+cumarray+j*(subset_size+1),(subset_size-j)*sizeof(PetscScalar));CHKERRQ(ierr); 168 } 169 } else { 170 ierr = PetscMemcpy(S,Sarray+cumarray,subset_size*subset_size*sizeof(PetscScalar));CHKERRQ(ierr); 171 ierr = PetscMemcpy(St,Starray+cumarray,subset_size*subset_size*sizeof(PetscScalar));CHKERRQ(ierr); 172 } 173 } else { 174 S = Sarray + cumarray; 175 St = Starray + cumarray; 176 } 177 178 /* Threshold: this is an heuristic for edges */ 179 ierr = ISGetIndices(sub_schurs->is_subs[i],&idxs);CHKERRQ(ierr); 180 thresh = pcbddc->mat_graph->count[idxs[0]]*pcbddc->adaptive_threshold; 181 182 if (sub_schurs->is_hermitian && sub_schurs->is_posdef) { 183 PetscBLASInt B_itype = 1; 184 PetscBLASInt B_IL, B_IU; 185 PetscReal eps = -1.0; /* dlamch? */ 186 PetscInt nmin_s; 187 188 /* ask for eigenvalues larger than thresh */ 189 if (pcbddc->dbg_flag) { 190 PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"Computing for sub %d/%d %d %d.\n",i,sub_schurs->n_subs,subset_size,pcbddc->mat_graph->count[idxs[0]]); 191 } 192 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 193 #if defined(PETSC_USE_COMPLEX) 194 PetscStackCallBLAS("LAPACKsygvx",LAPACKsygvx_(&B_itype,"V","V","L",&B_N,St,&B_N,S,&B_N,&thresh,&infty,&B_IL,&B_IU,&eps,&B_neigs,eigs,eigv,&B_N,work,&B_lwork,rwork,B_iwork,B_ifail,&B_ierr)); 195 #else 196 PetscStackCallBLAS("LAPACKsygvx",LAPACKsygvx_(&B_itype,"V","V","L",&B_N,St,&B_N,S,&B_N,&thresh,&infty,&B_IL,&B_IU,&eps,&B_neigs,eigs,eigv,&B_N,work,&B_lwork,B_iwork,B_ifail,&B_ierr)); 197 #endif 198 ierr = PetscFPTrapPop();CHKERRQ(ierr); 199 if (B_ierr) { 200 if (B_ierr < 0 ) { 201 SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in SYGVX Lapack routine: illegal value for argument %d",-(int)B_ierr); 202 } else if (B_ierr <= B_N) { 203 SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in SYGVX Lapack routine: %d eigenvalues failed to converge",(int)B_ierr); 204 } else { 205 SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in SYGVX Lapack routine: leading minor of order %d is not positive definite",(int)B_ierr-B_N-1); 206 } 207 } 208 209 if (B_neigs > nmax) { 210 if (pcbddc->dbg_flag) { 211 PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer," found %d eigs, more than maximum required %d.\n",B_neigs,nmax); 212 } 213 eigs_start = B_neigs -nmax; 214 B_neigs = nmax; 215 } 216 217 nmin_s = PetscMin(nmin,B_N); 218 if (B_neigs < nmin_s) { 219 PetscBLASInt B_neigs2; 220 221 B_IU = B_N - B_neigs; 222 B_IL = B_N - nmin_s + 1; 223 if (pcbddc->dbg_flag) { 224 PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer," found %d eigs, less than minimum required %d. Asking for %d to %d incl (fortran like)\n",B_neigs,nmin,B_IL,B_IU); 225 } 226 if (sub_schurs->is_hermitian) { 227 PetscInt j; 228 for (j=0;j<subset_size;j++) { 229 ierr = PetscMemcpy(S+j*(subset_size+1),Sarray+cumarray+j*(subset_size+1),(subset_size-j)*sizeof(PetscScalar));CHKERRQ(ierr); 230 } 231 for (j=0;j<subset_size;j++) { 232 ierr = PetscMemcpy(St+j*(subset_size+1),Starray+cumarray+j*(subset_size+1),(subset_size-j)*sizeof(PetscScalar));CHKERRQ(ierr); 233 } 234 } else { 235 ierr = PetscMemcpy(S,Sarray+cumarray,subset_size*subset_size*sizeof(PetscScalar));CHKERRQ(ierr); 236 ierr = PetscMemcpy(St,Starray+cumarray,subset_size*subset_size*sizeof(PetscScalar));CHKERRQ(ierr); 237 } 238 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 239 #if defined(PETSC_USE_COMPLEX) 240 PetscStackCallBLAS("LAPACKsygvx",LAPACKsygvx_(&B_itype,"V","I","L",&B_N,St,&B_N,S,&B_N,&thresh,&infty,&B_IL,&B_IU,&eps,&B_neigs2,eigs+B_neigs,eigv+B_neigs*subset_size,&B_N,work,&B_lwork,rwork,B_iwork,B_ifail,&B_ierr)); 241 #else 242 PetscStackCallBLAS("LAPACKsygvx",LAPACKsygvx_(&B_itype,"V","I","L",&B_N,St,&B_N,S,&B_N,&thresh,&infty,&B_IL,&B_IU,&eps,&B_neigs2,eigs+B_neigs,eigv+B_neigs*subset_size,&B_N,work,&B_lwork,B_iwork,B_ifail,&B_ierr)); 243 #endif 244 ierr = PetscFPTrapPop();CHKERRQ(ierr); 245 B_neigs += B_neigs2; 246 } 247 if (B_ierr) { 248 if (B_ierr < 0 ) { 249 SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in SYGVX Lapack routine: illegal value for argument %d",-(int)B_ierr); 250 } else if (B_ierr <= B_N) { 251 SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in SYGVX Lapack routine: %d eigenvalues failed to converge",(int)B_ierr); 252 } else { 253 SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in SYGVX Lapack routine: leading minor of order %d is not positive definite",(int)B_ierr-B_N-1); 254 } 255 } 256 if (pcbddc->dbg_flag) { 257 PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer," -> Got %d eigs\n",B_neigs); 258 for (j=0;j<B_neigs;j++) { 259 if (eigs[j] == 0.0) { 260 PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer," Inf\n"); 261 } else { 262 PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer," %1.6e\n",eigs[j+eigs_start]); 263 } 264 } 265 } 266 } else { 267 /* TODO */ 268 } 269 270 maxneigs = PetscMax(B_neigs,maxneigs); 271 pcbddc->adaptive_constraints_n[i+nv] = B_neigs; 272 ierr = PetscMemcpy(pcbddc->adaptive_constraints_data+cum2,eigv+eigs_start*subset_size,B_neigs*subset_size*sizeof(PetscScalar));CHKERRQ(ierr); 273 274 if (pcbddc->dbg_flag > 1) { 275 PetscInt ii; 276 for (ii=0;ii<B_neigs;ii++) { 277 PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer," -> Eigenvector %d/%d (%d)\n",ii,B_neigs,B_N); 278 for (j=0;j<B_N;j++) { 279 PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer," %1.4e\n",pcbddc->adaptive_constraints_data[ii*subset_size+j+cum2]); 280 } 281 } 282 } 283 for (j=0;j<B_neigs;j++) { 284 #if 0 285 { 286 PetscBLASInt Blas_N,Blas_one = 1.0; 287 PetscScalar norm; 288 ierr = PetscBLASIntCast(subset_size,&Blas_N);CHKERRQ(ierr); 289 PetscStackCallBLAS("BLASdot",norm = BLASdot_(&Blas_N,pcbddc->adaptive_constraints_data+cum2,&Blas_one,pcbddc->adaptive_constraints_data+cum2,&Blas_one)); 290 if (pcbddc->adaptive_constraints_data[cum2] > 0.0) { 291 norm = 1.0/PetscSqrtReal(PetscRealPart(norm)); 292 } else { 293 norm = -1.0/PetscSqrtReal(PetscRealPart(norm)); 294 } 295 PetscStackCallBLAS("BLASscal",BLASscal_(&Blas_N,&norm,pcbddc->adaptive_constraints_data+cum2,&Blas_one)); 296 } 297 #endif 298 ierr = PetscMemcpy(pcbddc->adaptive_constraints_idxs+cum2,idxs,subset_size*sizeof(PetscInt));CHKERRQ(ierr); 299 pcbddc->adaptive_constraints_ptrs[cum++] = cum2; 300 cum2 += subset_size; 301 } 302 ierr = ISRestoreIndices(sub_schurs->is_subs[i],&idxs);CHKERRQ(ierr); 303 } 304 /* shift for next computation */ 305 cumarray += subset_size*subset_size; 306 } 307 if (pcbddc->dbg_flag) { 308 ierr = PetscViewerFlush(pcbddc->dbg_viewer);CHKERRQ(ierr); 309 } 310 pcbddc->adaptive_constraints_ptrs[cum] = cum2; 311 312 if (mss) { 313 ierr = MatSeqAIJRestoreArray(sub_schurs->sum_S_Ej_inv_all,&Sarray);CHKERRQ(ierr); 314 ierr = MatSeqAIJRestoreArray(sub_schurs->sum_S_Ej_tilda_all,&Starray);CHKERRQ(ierr); 315 /* destroy matrices (junk) */ 316 ierr = MatDestroy(&sub_schurs->sum_S_Ej_inv_all);CHKERRQ(ierr); 317 ierr = MatDestroy(&sub_schurs->sum_S_Ej_tilda_all);CHKERRQ(ierr); 318 } 319 if (allocated_S_St) { 320 ierr = PetscFree2(S,St);CHKERRQ(ierr); 321 } 322 ierr = PetscFree5(eigv,eigs,work,B_iwork,B_ifail);CHKERRQ(ierr); 323 #if defined(PETSC_USE_COMPLEX) 324 ierr = PetscFree(rwork);CHKERRQ(ierr); 325 #endif 326 if (pcbddc->dbg_flag) { 327 PetscInt maxneigs_r; 328 ierr = MPI_Allreduce(&maxneigs,&maxneigs_r,1,MPIU_INT,MPI_MAX,PetscObjectComm((PetscObject)pc));CHKERRQ(ierr); 329 ierr = PetscPrintf(PetscObjectComm((PetscObject)pc),"Maximum number of constraints per cc %d\n",maxneigs_r);CHKERRQ(ierr); 330 } 331 PetscFunctionReturn(0); 332 } 333 334 #undef __FUNCT__ 335 #define __FUNCT__ "PCBDDCSetUpSolvers" 336 PetscErrorCode PCBDDCSetUpSolvers(PC pc) 337 { 338 PC_BDDC* pcbddc = (PC_BDDC*)pc->data; 339 PetscScalar *coarse_submat_vals; 340 PetscErrorCode ierr; 341 342 PetscFunctionBegin; 343 /* Setup local scatters R_to_B and (optionally) R_to_D */ 344 /* PCBDDCSetUpLocalWorkVectors should be called first! */ 345 ierr = PCBDDCSetUpLocalScatters(pc);CHKERRQ(ierr); 346 347 /* Setup local neumann solver ksp_R */ 348 /* PCBDDCSetUpLocalScatters should be called first! */ 349 ierr = PCBDDCSetUpLocalSolvers(pc,PETSC_FALSE,PETSC_TRUE);CHKERRQ(ierr); 350 351 /* Change global null space passed in by the user if change of basis has been requested */ 352 if (pcbddc->NullSpace && pcbddc->ChangeOfBasisMatrix) { 353 ierr = PCBDDCNullSpaceAdaptGlobal(pc);CHKERRQ(ierr); 354 } 355 356 /* 357 Setup local correction and local part of coarse basis. 358 Gives back the dense local part of the coarse matrix in column major ordering 359 */ 360 ierr = PCBDDCSetUpCorrection(pc,&coarse_submat_vals);CHKERRQ(ierr); 361 362 /* Compute total number of coarse nodes and setup coarse solver */ 363 ierr = PCBDDCSetUpCoarseSolver(pc,coarse_submat_vals);CHKERRQ(ierr); 364 365 /* free */ 366 ierr = PetscFree(coarse_submat_vals);CHKERRQ(ierr); 367 PetscFunctionReturn(0); 368 } 369 370 #undef __FUNCT__ 371 #define __FUNCT__ "PCBDDCResetCustomization" 372 PetscErrorCode PCBDDCResetCustomization(PC pc) 373 { 374 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 375 PetscErrorCode ierr; 376 377 PetscFunctionBegin; 378 ierr = PCBDDCGraphResetCSR(pcbddc->mat_graph);CHKERRQ(ierr); 379 ierr = ISDestroy(&pcbddc->user_primal_vertices);CHKERRQ(ierr); 380 ierr = MatNullSpaceDestroy(&pcbddc->NullSpace);CHKERRQ(ierr); 381 ierr = ISDestroy(&pcbddc->NeumannBoundaries);CHKERRQ(ierr); 382 ierr = ISDestroy(&pcbddc->NeumannBoundariesLocal);CHKERRQ(ierr); 383 ierr = ISDestroy(&pcbddc->DirichletBoundaries);CHKERRQ(ierr); 384 ierr = MatNullSpaceDestroy(&pcbddc->onearnullspace);CHKERRQ(ierr); 385 ierr = PetscFree(pcbddc->onearnullvecs_state);CHKERRQ(ierr); 386 ierr = ISDestroy(&pcbddc->DirichletBoundariesLocal);CHKERRQ(ierr); 387 ierr = PCBDDCSetDofsSplitting(pc,0,NULL);CHKERRQ(ierr); 388 ierr = PCBDDCSetDofsSplittingLocal(pc,0,NULL);CHKERRQ(ierr); 389 PetscFunctionReturn(0); 390 } 391 392 #undef __FUNCT__ 393 #define __FUNCT__ "PCBDDCResetTopography" 394 PetscErrorCode PCBDDCResetTopography(PC pc) 395 { 396 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 397 PetscErrorCode ierr; 398 399 PetscFunctionBegin; 400 ierr = MatDestroy(&pcbddc->user_ChangeOfBasisMatrix);CHKERRQ(ierr); 401 ierr = MatDestroy(&pcbddc->ChangeOfBasisMatrix);CHKERRQ(ierr); 402 ierr = MatDestroy(&pcbddc->ConstraintMatrix);CHKERRQ(ierr); 403 ierr = PCBDDCGraphReset(pcbddc->mat_graph);CHKERRQ(ierr); 404 ierr = PCBDDCSubSchursReset(pcbddc->sub_schurs);CHKERRQ(ierr); 405 PetscFunctionReturn(0); 406 } 407 408 #undef __FUNCT__ 409 #define __FUNCT__ "PCBDDCResetSolvers" 410 PetscErrorCode PCBDDCResetSolvers(PC pc) 411 { 412 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 413 PetscScalar *array; 414 PetscErrorCode ierr; 415 416 PetscFunctionBegin; 417 ierr = VecDestroy(&pcbddc->coarse_vec);CHKERRQ(ierr); 418 if (pcbddc->coarse_phi_B) { 419 ierr = MatDenseGetArray(pcbddc->coarse_phi_B,&array);CHKERRQ(ierr); 420 ierr = PetscFree(array);CHKERRQ(ierr); 421 } 422 ierr = MatDestroy(&pcbddc->coarse_phi_B);CHKERRQ(ierr); 423 ierr = MatDestroy(&pcbddc->coarse_phi_D);CHKERRQ(ierr); 424 ierr = MatDestroy(&pcbddc->coarse_psi_B);CHKERRQ(ierr); 425 ierr = MatDestroy(&pcbddc->coarse_psi_D);CHKERRQ(ierr); 426 ierr = VecDestroy(&pcbddc->vec1_P);CHKERRQ(ierr); 427 ierr = VecDestroy(&pcbddc->vec1_C);CHKERRQ(ierr); 428 if (pcbddc->local_auxmat2) { 429 ierr = MatDenseGetArray(pcbddc->local_auxmat2,&array);CHKERRQ(ierr); 430 ierr = PetscFree(array);CHKERRQ(ierr); 431 } 432 ierr = MatDestroy(&pcbddc->local_auxmat2);CHKERRQ(ierr); 433 ierr = MatDestroy(&pcbddc->local_auxmat1);CHKERRQ(ierr); 434 ierr = VecDestroy(&pcbddc->vec1_R);CHKERRQ(ierr); 435 ierr = VecDestroy(&pcbddc->vec2_R);CHKERRQ(ierr); 436 ierr = ISDestroy(&pcbddc->is_R_local);CHKERRQ(ierr); 437 ierr = VecScatterDestroy(&pcbddc->R_to_B);CHKERRQ(ierr); 438 ierr = VecScatterDestroy(&pcbddc->R_to_D);CHKERRQ(ierr); 439 ierr = VecScatterDestroy(&pcbddc->coarse_loc_to_glob);CHKERRQ(ierr); 440 ierr = KSPDestroy(&pcbddc->ksp_D);CHKERRQ(ierr); 441 ierr = KSPDestroy(&pcbddc->ksp_R);CHKERRQ(ierr); 442 ierr = KSPDestroy(&pcbddc->coarse_ksp);CHKERRQ(ierr); 443 ierr = MatDestroy(&pcbddc->local_mat);CHKERRQ(ierr); 444 ierr = PetscFree(pcbddc->primal_indices_local_idxs);CHKERRQ(ierr); 445 ierr = PetscFree(pcbddc->global_primal_indices);CHKERRQ(ierr); 446 ierr = ISDestroy(&pcbddc->coarse_subassembling);CHKERRQ(ierr); 447 ierr = ISDestroy(&pcbddc->coarse_subassembling_init);CHKERRQ(ierr); 448 PetscFunctionReturn(0); 449 } 450 451 #undef __FUNCT__ 452 #define __FUNCT__ "PCBDDCSetUpLocalWorkVectors" 453 PetscErrorCode PCBDDCSetUpLocalWorkVectors(PC pc) 454 { 455 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 456 PC_IS *pcis = (PC_IS*)pc->data; 457 VecType impVecType; 458 PetscInt n_constraints,n_R,old_size; 459 PetscErrorCode ierr; 460 461 PetscFunctionBegin; 462 if (!pcbddc->ConstraintMatrix) { 463 SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_PLIB,"BDDC Constraint matrix has not been created"); 464 } 465 /* get sizes */ 466 n_constraints = pcbddc->local_primal_size - pcbddc->n_actual_vertices; 467 n_R = pcis->n-pcbddc->n_actual_vertices; 468 ierr = VecGetType(pcis->vec1_N,&impVecType);CHKERRQ(ierr); 469 /* local work vectors (try to avoid unneeded work)*/ 470 /* R nodes */ 471 old_size = -1; 472 if (pcbddc->vec1_R) { 473 ierr = VecGetSize(pcbddc->vec1_R,&old_size);CHKERRQ(ierr); 474 } 475 if (n_R != old_size) { 476 ierr = VecDestroy(&pcbddc->vec1_R);CHKERRQ(ierr); 477 ierr = VecDestroy(&pcbddc->vec2_R);CHKERRQ(ierr); 478 ierr = VecCreate(PetscObjectComm((PetscObject)pcis->vec1_N),&pcbddc->vec1_R);CHKERRQ(ierr); 479 ierr = VecSetSizes(pcbddc->vec1_R,PETSC_DECIDE,n_R);CHKERRQ(ierr); 480 ierr = VecSetType(pcbddc->vec1_R,impVecType);CHKERRQ(ierr); 481 ierr = VecDuplicate(pcbddc->vec1_R,&pcbddc->vec2_R);CHKERRQ(ierr); 482 } 483 /* local primal dofs */ 484 old_size = -1; 485 if (pcbddc->vec1_P) { 486 ierr = VecGetSize(pcbddc->vec1_P,&old_size);CHKERRQ(ierr); 487 } 488 if (pcbddc->local_primal_size != old_size) { 489 ierr = VecDestroy(&pcbddc->vec1_P);CHKERRQ(ierr); 490 ierr = VecCreate(PetscObjectComm((PetscObject)pcis->vec1_N),&pcbddc->vec1_P);CHKERRQ(ierr); 491 ierr = VecSetSizes(pcbddc->vec1_P,PETSC_DECIDE,pcbddc->local_primal_size);CHKERRQ(ierr); 492 ierr = VecSetType(pcbddc->vec1_P,impVecType);CHKERRQ(ierr); 493 } 494 /* local explicit constraints */ 495 old_size = -1; 496 if (pcbddc->vec1_C) { 497 ierr = VecGetSize(pcbddc->vec1_C,&old_size);CHKERRQ(ierr); 498 } 499 if (n_constraints && n_constraints != old_size) { 500 ierr = VecDestroy(&pcbddc->vec1_C);CHKERRQ(ierr); 501 ierr = VecCreate(PetscObjectComm((PetscObject)pcis->vec1_N),&pcbddc->vec1_C);CHKERRQ(ierr); 502 ierr = VecSetSizes(pcbddc->vec1_C,PETSC_DECIDE,n_constraints);CHKERRQ(ierr); 503 ierr = VecSetType(pcbddc->vec1_C,impVecType);CHKERRQ(ierr); 504 } 505 PetscFunctionReturn(0); 506 } 507 508 #undef __FUNCT__ 509 #define __FUNCT__ "PCBDDCSetUpCorrection" 510 PetscErrorCode PCBDDCSetUpCorrection(PC pc, PetscScalar **coarse_submat_vals_n) 511 { 512 PetscErrorCode ierr; 513 /* pointers to pcis and pcbddc */ 514 PC_IS* pcis = (PC_IS*)pc->data; 515 PC_BDDC* pcbddc = (PC_BDDC*)pc->data; 516 /* submatrices of local problem */ 517 Mat A_RV,A_VR,A_VV; 518 /* submatrices of local coarse problem */ 519 Mat S_VV,S_CV,S_VC,S_CC; 520 /* working matrices */ 521 Mat C_CR; 522 /* additional working stuff */ 523 PC pc_R; 524 Mat F; 525 PetscBool isLU,isCHOL,isILU; 526 527 PetscScalar *coarse_submat_vals; /* TODO: use a PETSc matrix */ 528 PetscScalar *work; 529 PetscInt *idx_V_B; 530 PetscInt n,n_vertices,n_constraints; 531 PetscInt i,n_R,n_D,n_B; 532 PetscBool unsymmetric_check; 533 /* matrix type (vector type propagated downstream from vec1_C and local matrix type) */ 534 MatType impMatType; 535 /* some shortcuts to scalars */ 536 PetscScalar one=1.0,m_one=-1.0; 537 538 PetscFunctionBegin; 539 /* get number of vertices (corners plus constraints with change of basis) 540 pcbddc->n_actual_vertices stores the actual number of vertices, pcbddc->n_vertices the number of corners computed */ 541 n_vertices = pcbddc->n_actual_vertices; 542 n_constraints = pcbddc->local_primal_size-n_vertices; 543 /* Set Non-overlapping dimensions */ 544 n_B = pcis->n_B; n_D = pcis->n - n_B; 545 n_R = pcis->n-n_vertices; 546 547 /* Set types for local objects needed by BDDC precondtioner */ 548 impMatType = MATSEQDENSE; 549 550 /* vertices in boundary numbering */ 551 ierr = PetscMalloc1(n_vertices,&idx_V_B);CHKERRQ(ierr); 552 ierr = ISGlobalToLocalMappingApply(pcis->BtoNmap,IS_GTOLM_DROP,n_vertices,pcbddc->primal_indices_local_idxs,&i,idx_V_B);CHKERRQ(ierr); 553 if (i != n_vertices) { 554 SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Error in boundary numbering for BDDC vertices! %d != %d\n",n_vertices,i); 555 } 556 557 /* Subdomain contribution (Non-overlapping) to coarse matrix */ 558 ierr = PetscMalloc1(pcbddc->local_primal_size*pcbddc->local_primal_size,&coarse_submat_vals);CHKERRQ(ierr); 559 ierr = MatCreateSeqDense(PETSC_COMM_SELF,n_vertices,n_vertices,coarse_submat_vals,&S_VV);CHKERRQ(ierr); 560 ierr = MatSeqDenseSetLDA(S_VV,pcbddc->local_primal_size);CHKERRQ(ierr); 561 ierr = MatCreateSeqDense(PETSC_COMM_SELF,n_constraints,n_vertices,coarse_submat_vals+n_vertices,&S_CV);CHKERRQ(ierr); 562 ierr = MatSeqDenseSetLDA(S_CV,pcbddc->local_primal_size);CHKERRQ(ierr); 563 ierr = MatCreateSeqDense(PETSC_COMM_SELF,n_vertices,n_constraints,coarse_submat_vals+pcbddc->local_primal_size*n_vertices,&S_VC);CHKERRQ(ierr); 564 ierr = MatSeqDenseSetLDA(S_VC,pcbddc->local_primal_size);CHKERRQ(ierr); 565 ierr = MatCreateSeqDense(PETSC_COMM_SELF,n_constraints,n_constraints,coarse_submat_vals+(pcbddc->local_primal_size+1)*n_vertices,&S_CC);CHKERRQ(ierr); 566 ierr = MatSeqDenseSetLDA(S_CC,pcbddc->local_primal_size);CHKERRQ(ierr); 567 568 unsymmetric_check = PETSC_FALSE; 569 /* allocate workspace */ 570 n = 0; 571 if (n_constraints) { 572 n += n_R*n_constraints; 573 } 574 if (n_vertices) { 575 n = PetscMax(2*n_R*n_vertices,n); 576 } 577 if (!pcbddc->issym) { 578 n = PetscMax(2*n_R*pcbddc->local_primal_size,n); 579 unsymmetric_check = PETSC_TRUE; 580 } 581 ierr = PetscMalloc1(n,&work);CHKERRQ(ierr); 582 583 /* determine if can use MatSolve routines instead of calling KSPSolve on ksp_R */ 584 ierr = KSPGetPC(pcbddc->ksp_R,&pc_R);CHKERRQ(ierr); 585 ierr = PetscObjectTypeCompare((PetscObject)pc_R,PCLU,&isLU);CHKERRQ(ierr); 586 ierr = PetscObjectTypeCompare((PetscObject)pc_R,PCILU,&isILU);CHKERRQ(ierr); 587 ierr = PetscObjectTypeCompare((PetscObject)pc_R,PCCHOLESKY,&isCHOL);CHKERRQ(ierr); 588 if (isLU || isILU || isCHOL) { 589 ierr = PCFactorGetMatrix(pc_R,&F);CHKERRQ(ierr); 590 } else { 591 F = NULL; 592 } 593 594 /* Precompute stuffs needed for preprocessing and application of BDDC*/ 595 if (n_constraints) { 596 Mat M1,M2,M3; 597 IS is_aux; 598 /* see if we can save some allocations */ 599 if (pcbddc->local_auxmat2) { 600 PetscInt on_R,on_constraints; 601 ierr = MatGetSize(pcbddc->local_auxmat2,&on_R,&on_constraints);CHKERRQ(ierr); 602 if (on_R != n_R || on_constraints != n_constraints) { 603 PetscScalar *marray; 604 605 ierr = MatDenseGetArray(pcbddc->local_auxmat2,&marray);CHKERRQ(ierr); 606 ierr = PetscFree(marray);CHKERRQ(ierr); 607 ierr = MatDestroy(&pcbddc->local_auxmat2);CHKERRQ(ierr); 608 ierr = MatDestroy(&pcbddc->local_auxmat1);CHKERRQ(ierr); 609 } 610 } 611 /* auxiliary matrices */ 612 if (!pcbddc->local_auxmat2) { 613 PetscScalar *marray; 614 615 ierr = PetscMalloc1(2*n_R*n_constraints,&marray);CHKERRQ(ierr); 616 ierr = MatCreateSeqDense(PETSC_COMM_SELF,n_R,n_constraints,marray,&pcbddc->local_auxmat2);CHKERRQ(ierr); 617 marray += n_R*n_constraints; 618 ierr = MatCreateSeqDense(PETSC_COMM_SELF,n_constraints,n_R,marray,&pcbddc->local_auxmat1);CHKERRQ(ierr); 619 } 620 621 /* Extract constraints on R nodes: C_{CR} */ 622 ierr = ISCreateStride(PETSC_COMM_SELF,n_constraints,n_vertices,1,&is_aux);CHKERRQ(ierr); 623 ierr = MatGetSubMatrix(pcbddc->ConstraintMatrix,is_aux,pcbddc->is_R_local,MAT_INITIAL_MATRIX,&C_CR);CHKERRQ(ierr); 624 ierr = ISDestroy(&is_aux);CHKERRQ(ierr); 625 626 /* Assemble local_auxmat2 = - A_{RR}^{-1} C^T_{CR} needed by BDDC application */ 627 ierr = PetscMemzero(work,n_R*n_constraints*sizeof(PetscScalar));CHKERRQ(ierr); 628 for (i=0;i<n_constraints;i++) { 629 const PetscScalar *row_cmat_values; 630 const PetscInt *row_cmat_indices; 631 PetscInt size_of_constraint,j; 632 633 ierr = MatGetRow(C_CR,i,&size_of_constraint,&row_cmat_indices,&row_cmat_values);CHKERRQ(ierr); 634 for (j=0;j<size_of_constraint;j++) { 635 work[row_cmat_indices[j]+i*n_R] = -row_cmat_values[j]; 636 } 637 ierr = MatRestoreRow(C_CR,i,&size_of_constraint,&row_cmat_indices,&row_cmat_values);CHKERRQ(ierr); 638 } 639 if (F) { 640 Mat B; 641 642 ierr = MatCreateSeqDense(PETSC_COMM_SELF,n_R,n_constraints,work,&B);CHKERRQ(ierr); 643 ierr = MatMatSolve(F,B,pcbddc->local_auxmat2);CHKERRQ(ierr); 644 ierr = MatDestroy(&B);CHKERRQ(ierr); 645 } else { 646 PetscScalar *xarray; 647 ierr = MatDenseGetArray(pcbddc->local_auxmat2,&xarray);CHKERRQ(ierr); 648 for (i=0;i<n_constraints;i++) { 649 ierr = VecPlaceArray(pcbddc->vec1_R,work+i*n_R);CHKERRQ(ierr); 650 ierr = VecPlaceArray(pcbddc->vec2_R,xarray+i*n_R);CHKERRQ(ierr); 651 ierr = KSPSolve(pcbddc->ksp_R,pcbddc->vec1_R,pcbddc->vec2_R);CHKERRQ(ierr); 652 ierr = VecResetArray(pcbddc->vec1_R);CHKERRQ(ierr); 653 ierr = VecResetArray(pcbddc->vec2_R);CHKERRQ(ierr); 654 } 655 ierr = MatDenseRestoreArray(pcbddc->local_auxmat2,&xarray);CHKERRQ(ierr); 656 } 657 658 /* Assemble explicitly S_CC = ( C_{CR} A_{RR}^{-1} C^T_{CR} )^{-1} */ 659 ierr = MatConvert(C_CR,impMatType,MAT_REUSE_MATRIX,&C_CR);CHKERRQ(ierr); 660 ierr = MatMatMult(C_CR,pcbddc->local_auxmat2,MAT_INITIAL_MATRIX,PETSC_DEFAULT,&M3);CHKERRQ(ierr); 661 ierr = MatDuplicate(M3,MAT_DO_NOT_COPY_VALUES,&M1);CHKERRQ(ierr); 662 ierr = MatDuplicate(M3,MAT_DO_NOT_COPY_VALUES,&M2);CHKERRQ(ierr); 663 ierr = MatLUFactor(M3,NULL,NULL,NULL);CHKERRQ(ierr); 664 ierr = VecSet(pcbddc->vec1_C,m_one);CHKERRQ(ierr); 665 ierr = MatDiagonalSet(M2,pcbddc->vec1_C,INSERT_VALUES);CHKERRQ(ierr); 666 ierr = MatMatSolve(M3,M2,M1);CHKERRQ(ierr); 667 ierr = MatDestroy(&M2);CHKERRQ(ierr); 668 ierr = MatDestroy(&M3);CHKERRQ(ierr); 669 /* Assemble local_auxmat1 = S_CC*C_{CR} needed by BDDC application in KSP and in preproc */ 670 ierr = MatMatMult(M1,C_CR,MAT_REUSE_MATRIX,PETSC_DEFAULT,&pcbddc->local_auxmat1);CHKERRQ(ierr); 671 ierr = MatCopy(M1,S_CC,SAME_NONZERO_PATTERN);CHKERRQ(ierr); /* S_CC can have a different LDA, MatMatSolve doesn't support it */ 672 ierr = MatDestroy(&M1);CHKERRQ(ierr); 673 } 674 /* Get submatrices from subdomain matrix */ 675 if (n_vertices) { 676 Mat newmat; 677 IS is_aux; 678 PetscInt ibs,mbs; 679 PetscBool issbaij; 680 681 ierr = ISComplement(pcbddc->is_R_local,0,pcis->n,&is_aux);CHKERRQ(ierr); 682 ierr = MatGetBlockSize(pcbddc->local_mat,&mbs);CHKERRQ(ierr); 683 ierr = ISGetBlockSize(pcbddc->is_R_local,&ibs);CHKERRQ(ierr); 684 if (ibs != mbs) { /* need to convert to SEQAIJ */ 685 ierr = MatConvert(pcbddc->local_mat,MATSEQAIJ,MAT_INITIAL_MATRIX,&newmat);CHKERRQ(ierr); 686 ierr = MatGetSubMatrix(newmat,pcbddc->is_R_local,is_aux,MAT_INITIAL_MATRIX,&A_RV);CHKERRQ(ierr); 687 ierr = MatGetSubMatrix(newmat,is_aux,pcbddc->is_R_local,MAT_INITIAL_MATRIX,&A_VR);CHKERRQ(ierr); 688 ierr = MatGetSubMatrix(newmat,is_aux,is_aux,MAT_INITIAL_MATRIX,&A_VV);CHKERRQ(ierr); 689 ierr = MatDestroy(&newmat);CHKERRQ(ierr); 690 } else { 691 /* this is safe */ 692 ierr = MatGetSubMatrix(pcbddc->local_mat,is_aux,is_aux,MAT_INITIAL_MATRIX,&A_VV);CHKERRQ(ierr); 693 ierr = PetscObjectTypeCompare((PetscObject)pcbddc->local_mat,MATSEQSBAIJ,&issbaij);CHKERRQ(ierr); 694 if (issbaij) { /* need to convert to BAIJ to get offdiagonal blocks */ 695 ierr = MatConvert(pcbddc->local_mat,MATSEQBAIJ,MAT_INITIAL_MATRIX,&newmat);CHKERRQ(ierr); 696 ierr = MatGetSubMatrix(newmat,is_aux,pcbddc->is_R_local,MAT_INITIAL_MATRIX,&A_VR);CHKERRQ(ierr); 697 ierr = MatTranspose(A_VR,MAT_INITIAL_MATRIX,&A_RV);CHKERRQ(ierr); 698 ierr = MatDestroy(&newmat);CHKERRQ(ierr); 699 ierr = MatConvert(A_VV,MATSEQBAIJ,MAT_REUSE_MATRIX,&A_VV);CHKERRQ(ierr); 700 } else { 701 ierr = MatGetSubMatrix(pcbddc->local_mat,pcbddc->is_R_local,is_aux,MAT_INITIAL_MATRIX,&A_RV);CHKERRQ(ierr); 702 ierr = MatGetSubMatrix(pcbddc->local_mat,is_aux,pcbddc->is_R_local,MAT_INITIAL_MATRIX,&A_VR);CHKERRQ(ierr); 703 } 704 } 705 ierr = ISDestroy(&is_aux);CHKERRQ(ierr); 706 } 707 708 /* Matrix of coarse basis functions (local) */ 709 if (pcbddc->coarse_phi_B) { 710 PetscInt on_B,on_primal,on_D=n_D; 711 if (pcbddc->coarse_phi_D) { 712 ierr = MatGetSize(pcbddc->coarse_phi_D,&on_D,NULL);CHKERRQ(ierr); 713 } 714 ierr = MatGetSize(pcbddc->coarse_phi_B,&on_B,&on_primal);CHKERRQ(ierr); 715 if (on_B != n_B || on_primal != pcbddc->local_primal_size || on_D != n_D) { 716 PetscScalar *marray; 717 718 ierr = MatDenseGetArray(pcbddc->coarse_phi_B,&marray);CHKERRQ(ierr); 719 ierr = PetscFree(marray);CHKERRQ(ierr); 720 ierr = MatDestroy(&pcbddc->coarse_phi_B);CHKERRQ(ierr); 721 ierr = MatDestroy(&pcbddc->coarse_psi_B);CHKERRQ(ierr); 722 ierr = MatDestroy(&pcbddc->coarse_phi_D);CHKERRQ(ierr); 723 ierr = MatDestroy(&pcbddc->coarse_psi_D);CHKERRQ(ierr); 724 } 725 } 726 727 if (!pcbddc->coarse_phi_B) { 728 PetscScalar *marray; 729 730 n = n_B*pcbddc->local_primal_size; 731 if (pcbddc->switch_static || pcbddc->dbg_flag) { 732 n += n_D*pcbddc->local_primal_size; 733 } 734 if (!pcbddc->issym) { 735 n *= 2; 736 } 737 ierr = PetscCalloc1(n,&marray);CHKERRQ(ierr); 738 ierr = MatCreateSeqDense(PETSC_COMM_SELF,n_B,pcbddc->local_primal_size,marray,&pcbddc->coarse_phi_B);CHKERRQ(ierr); 739 n = n_B*pcbddc->local_primal_size; 740 if (pcbddc->switch_static || pcbddc->dbg_flag) { 741 ierr = MatCreateSeqDense(PETSC_COMM_SELF,n_D,pcbddc->local_primal_size,marray+n,&pcbddc->coarse_phi_D);CHKERRQ(ierr); 742 n += n_D*pcbddc->local_primal_size; 743 } 744 if (!pcbddc->issym) { 745 ierr = MatCreateSeqDense(PETSC_COMM_SELF,n_B,pcbddc->local_primal_size,marray+n,&pcbddc->coarse_psi_B);CHKERRQ(ierr); 746 if (pcbddc->switch_static || pcbddc->dbg_flag) { 747 n = n_B*pcbddc->local_primal_size; 748 ierr = MatCreateSeqDense(PETSC_COMM_SELF,n_D,pcbddc->local_primal_size,marray+n,&pcbddc->coarse_psi_D);CHKERRQ(ierr); 749 } 750 } else { 751 ierr = PetscObjectReference((PetscObject)pcbddc->coarse_phi_B);CHKERRQ(ierr); 752 pcbddc->coarse_psi_B = pcbddc->coarse_phi_B; 753 if (pcbddc->switch_static || pcbddc->dbg_flag) { 754 ierr = PetscObjectReference((PetscObject)pcbddc->coarse_phi_D);CHKERRQ(ierr); 755 pcbddc->coarse_psi_D = pcbddc->coarse_phi_D; 756 } 757 } 758 } 759 /* We are now ready to evaluate coarse basis functions and subdomain contribution to coarse problem */ 760 /* vertices */ 761 if (n_vertices) { 762 763 if (n_R) { 764 Mat A_RRmA_RV,S_VVt; /* S_VVt with LDA=N */ 765 PetscBLASInt B_N,B_one = 1; 766 PetscScalar *x,*y; 767 768 ierr = PetscMemzero(work,2*n_R*n_vertices*sizeof(PetscScalar));CHKERRQ(ierr); 769 ierr = MatCreateSeqDense(PETSC_COMM_SELF,n_R,n_vertices,work,&A_RRmA_RV);CHKERRQ(ierr); 770 ierr = MatConvert(A_RV,impMatType,MAT_REUSE_MATRIX,&A_RV);CHKERRQ(ierr); 771 if (F) { 772 ierr = MatMatSolve(F,A_RV,A_RRmA_RV);CHKERRQ(ierr); 773 } else { 774 ierr = MatDenseGetArray(A_RV,&y);CHKERRQ(ierr); 775 for (i=0;i<n_vertices;i++) { 776 ierr = VecPlaceArray(pcbddc->vec1_R,y+i*n_R);CHKERRQ(ierr); 777 ierr = VecPlaceArray(pcbddc->vec2_R,work+i*n_R);CHKERRQ(ierr); 778 ierr = KSPSolve(pcbddc->ksp_R,pcbddc->vec1_R,pcbddc->vec2_R);CHKERRQ(ierr); 779 ierr = VecResetArray(pcbddc->vec1_R);CHKERRQ(ierr); 780 ierr = VecResetArray(pcbddc->vec2_R);CHKERRQ(ierr); 781 } 782 ierr = MatDenseRestoreArray(A_RV,&y);CHKERRQ(ierr); 783 } 784 ierr = MatScale(A_RRmA_RV,m_one);CHKERRQ(ierr); 785 /* S_VV and S_CV are the subdomain contribution to coarse matrix. WARNING -> column major ordering */ 786 if (n_constraints) { 787 Mat B; 788 ierr = MatMatMult(pcbddc->local_auxmat1,A_RRmA_RV,MAT_REUSE_MATRIX,PETSC_DEFAULT,&S_CV);CHKERRQ(ierr); 789 ierr = MatCreateSeqDense(PETSC_COMM_SELF,n_R,n_vertices,work+n_R*n_vertices,&B);CHKERRQ(ierr); 790 ierr = MatMatMult(pcbddc->local_auxmat2,S_CV,MAT_REUSE_MATRIX,PETSC_DEFAULT,&B);CHKERRQ(ierr); 791 ierr = MatScale(S_CV,m_one);CHKERRQ(ierr); 792 ierr = PetscBLASIntCast(n_R*n_vertices,&B_N);CHKERRQ(ierr); 793 PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&B_N,&one,work+n_R*n_vertices,&B_one,work,&B_one)); 794 ierr = MatDestroy(&B);CHKERRQ(ierr); 795 } 796 ierr = MatConvert(A_VR,impMatType,MAT_REUSE_MATRIX,&A_VR);CHKERRQ(ierr); 797 ierr = MatMatMult(A_VR,A_RRmA_RV,MAT_INITIAL_MATRIX,PETSC_DEFAULT,&S_VVt);CHKERRQ(ierr); 798 ierr = MatConvert(A_VV,impMatType,MAT_REUSE_MATRIX,&A_VV);CHKERRQ(ierr); 799 ierr = PetscBLASIntCast(n_vertices*n_vertices,&B_N);CHKERRQ(ierr); 800 ierr = MatDenseGetArray(A_VV,&x);CHKERRQ(ierr); 801 ierr = MatDenseGetArray(S_VVt,&y);CHKERRQ(ierr); 802 PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&B_N,&one,x,&B_one,y,&B_one)); 803 ierr = MatDenseRestoreArray(A_VV,&x);CHKERRQ(ierr); 804 ierr = MatDenseRestoreArray(S_VVt,&y);CHKERRQ(ierr); 805 ierr = MatCopy(S_VVt,S_VV,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 806 ierr = MatDestroy(&S_VVt);CHKERRQ(ierr); 807 ierr = MatDestroy(&A_RRmA_RV);CHKERRQ(ierr); 808 } else { 809 ierr = MatConvert(A_VV,impMatType,MAT_REUSE_MATRIX,&A_VV);CHKERRQ(ierr); 810 ierr = MatCopy(A_VV,S_VV,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 811 } 812 /* coarse basis functions */ 813 for (i=0;i<n_vertices;i++) { 814 PetscScalar *y; 815 816 ierr = VecPlaceArray(pcbddc->vec1_R,work+n_R*i);CHKERRQ(ierr); 817 ierr = MatDenseGetArray(pcbddc->coarse_phi_B,&y);CHKERRQ(ierr); 818 ierr = VecPlaceArray(pcis->vec1_B,y+n_B*i);CHKERRQ(ierr); 819 ierr = VecScatterBegin(pcbddc->R_to_B,pcbddc->vec1_R,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 820 ierr = VecScatterEnd(pcbddc->R_to_B,pcbddc->vec1_R,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 821 y[n_B*i+idx_V_B[i]] = 1.0; 822 ierr = MatDenseRestoreArray(pcbddc->coarse_phi_B,&y);CHKERRQ(ierr); 823 ierr = VecResetArray(pcis->vec1_B);CHKERRQ(ierr); 824 825 if (pcbddc->switch_static || pcbddc->dbg_flag) { 826 ierr = MatDenseGetArray(pcbddc->coarse_phi_D,&y);CHKERRQ(ierr); 827 ierr = VecPlaceArray(pcis->vec1_D,y+n_D*i);CHKERRQ(ierr); 828 ierr = VecScatterBegin(pcbddc->R_to_D,pcbddc->vec1_R,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 829 ierr = VecScatterEnd(pcbddc->R_to_D,pcbddc->vec1_R,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 830 ierr = VecResetArray(pcis->vec1_D);CHKERRQ(ierr); 831 ierr = MatDenseRestoreArray(pcbddc->coarse_phi_D,&y);CHKERRQ(ierr); 832 } 833 ierr = VecResetArray(pcbddc->vec1_R);CHKERRQ(ierr); 834 } 835 ierr = MatDestroy(&A_VV);CHKERRQ(ierr); 836 ierr = MatDestroy(&A_RV);CHKERRQ(ierr); 837 } 838 839 if (n_constraints) { 840 Mat B; 841 842 ierr = MatCreateSeqDense(PETSC_COMM_SELF,n_R,n_constraints,work,&B);CHKERRQ(ierr); 843 ierr = MatScale(S_CC,m_one);CHKERRQ(ierr); 844 ierr = MatMatMult(pcbddc->local_auxmat2,S_CC,MAT_REUSE_MATRIX,PETSC_DEFAULT,&B);CHKERRQ(ierr); 845 ierr = MatScale(S_CC,m_one);CHKERRQ(ierr); 846 if (n_vertices) { 847 ierr = MatMatMult(A_VR,B,MAT_REUSE_MATRIX,PETSC_DEFAULT,&S_VC);CHKERRQ(ierr); 848 } 849 ierr = MatDestroy(&B);CHKERRQ(ierr); 850 /* coarse basis functions */ 851 for (i=0;i<n_constraints;i++) { 852 PetscScalar *y; 853 854 ierr = VecPlaceArray(pcbddc->vec1_R,work+n_R*i);CHKERRQ(ierr); 855 ierr = MatDenseGetArray(pcbddc->coarse_phi_B,&y);CHKERRQ(ierr); 856 ierr = VecPlaceArray(pcis->vec1_B,y+n_B*(i+n_vertices));CHKERRQ(ierr); 857 ierr = VecScatterBegin(pcbddc->R_to_B,pcbddc->vec1_R,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 858 ierr = VecScatterEnd(pcbddc->R_to_B,pcbddc->vec1_R,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 859 ierr = MatDenseRestoreArray(pcbddc->coarse_phi_B,&y);CHKERRQ(ierr); 860 ierr = VecResetArray(pcis->vec1_B);CHKERRQ(ierr); 861 862 if (pcbddc->switch_static || pcbddc->dbg_flag) { 863 ierr = MatDenseGetArray(pcbddc->coarse_phi_D,&y);CHKERRQ(ierr); 864 ierr = VecPlaceArray(pcis->vec1_D,y+n_D*(i+n_vertices));CHKERRQ(ierr); 865 ierr = VecScatterBegin(pcbddc->R_to_D,pcbddc->vec1_R,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 866 ierr = VecScatterEnd(pcbddc->R_to_D,pcbddc->vec1_R,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 867 ierr = VecResetArray(pcis->vec1_D);CHKERRQ(ierr); 868 ierr = MatDenseRestoreArray(pcbddc->coarse_phi_D,&y);CHKERRQ(ierr); 869 } 870 ierr = VecResetArray(pcbddc->vec1_R);CHKERRQ(ierr); 871 } 872 } 873 874 /* compute other basis functions for non-symmetric problems */ 875 if (!pcbddc->issym) { 876 Mat B,X; 877 878 ierr = MatCreateSeqDense(PETSC_COMM_SELF,n_R,pcbddc->local_primal_size,work,&B);CHKERRQ(ierr); 879 880 if (n_constraints) { 881 Mat S_CCT,B_C; 882 883 ierr = MatCreateSeqDense(PETSC_COMM_SELF,n_R,n_constraints,work+n_vertices*n_R,&B_C);CHKERRQ(ierr); 884 ierr = MatTranspose(S_CC,MAT_INITIAL_MATRIX,&S_CCT);CHKERRQ(ierr); 885 ierr = MatTransposeMatMult(C_CR,S_CCT,MAT_REUSE_MATRIX,PETSC_DEFAULT,&B_C);CHKERRQ(ierr); 886 ierr = MatDestroy(&S_CCT);CHKERRQ(ierr); 887 if (n_vertices) { 888 Mat B_V,S_VCT; 889 890 ierr = MatCreateSeqDense(PETSC_COMM_SELF,n_R,n_vertices,work,&B_V);CHKERRQ(ierr); 891 ierr = MatTranspose(S_VC,MAT_INITIAL_MATRIX,&S_VCT);CHKERRQ(ierr); 892 ierr = MatTransposeMatMult(C_CR,S_VCT,MAT_REUSE_MATRIX,PETSC_DEFAULT,&B_V);CHKERRQ(ierr); 893 ierr = MatDestroy(&B_V);CHKERRQ(ierr); 894 ierr = MatDestroy(&S_VCT);CHKERRQ(ierr); 895 } 896 ierr = MatDestroy(&B_C);CHKERRQ(ierr); 897 } 898 if (n_vertices && n_R) { 899 Mat A_VRT; 900 PetscBLASInt B_N,B_one = 1; 901 902 if (!n_constraints) { /* if there are no constraints, reset work */ 903 ierr = PetscMemzero(work,n_R*pcbddc->local_primal_size*sizeof(PetscScalar));CHKERRQ(ierr); 904 } 905 ierr = MatCreateSeqDense(PETSC_COMM_SELF,n_R,n_vertices,work+pcbddc->local_primal_size*n_R,&A_VRT);CHKERRQ(ierr); 906 ierr = MatTranspose(A_VR,MAT_REUSE_MATRIX,&A_VRT);CHKERRQ(ierr); 907 ierr = PetscBLASIntCast(n_vertices*n_R,&B_N);CHKERRQ(ierr); 908 PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&B_N,&m_one,work+pcbddc->local_primal_size*n_R,&B_one,work,&B_one)); 909 ierr = MatDestroy(&A_VRT);CHKERRQ(ierr); 910 } 911 912 ierr = MatCreateSeqDense(PETSC_COMM_SELF,n_R,pcbddc->local_primal_size,work+pcbddc->local_primal_size*n_R,&X);CHKERRQ(ierr); 913 if (F) { /* currently there's no support for MatTransposeMatSolve(F,B,X) */ 914 for (i=0;i<pcbddc->local_primal_size;i++) { 915 ierr = VecPlaceArray(pcbddc->vec1_R,work+i*n_R);CHKERRQ(ierr); 916 ierr = VecPlaceArray(pcbddc->vec2_R,work+(i+pcbddc->local_primal_size)*n_R);CHKERRQ(ierr); 917 ierr = MatSolveTranspose(F,pcbddc->vec1_R,pcbddc->vec2_R);CHKERRQ(ierr); 918 ierr = VecResetArray(pcbddc->vec1_R);CHKERRQ(ierr); 919 ierr = VecResetArray(pcbddc->vec2_R);CHKERRQ(ierr); 920 } 921 } else { 922 for (i=0;i<pcbddc->local_primal_size;i++) { 923 ierr = VecPlaceArray(pcbddc->vec1_R,work+i*n_R);CHKERRQ(ierr); 924 ierr = VecPlaceArray(pcbddc->vec2_R,work+(i+pcbddc->local_primal_size)*n_R);CHKERRQ(ierr); 925 ierr = KSPSolveTranspose(pcbddc->ksp_R,pcbddc->vec1_R,pcbddc->vec2_R);CHKERRQ(ierr); 926 ierr = VecResetArray(pcbddc->vec1_R);CHKERRQ(ierr); 927 ierr = VecResetArray(pcbddc->vec2_R);CHKERRQ(ierr); 928 } 929 } 930 ierr = MatDestroy(&B);CHKERRQ(ierr); 931 /* coarse basis functions */ 932 for (i=0;i<pcbddc->local_primal_size;i++) { 933 PetscScalar *y; 934 935 ierr = VecPlaceArray(pcbddc->vec1_R,work+n_R*(i+pcbddc->local_primal_size));CHKERRQ(ierr); 936 ierr = MatDenseGetArray(pcbddc->coarse_psi_B,&y);CHKERRQ(ierr); 937 ierr = VecPlaceArray(pcis->vec1_B,y+n_B*i);CHKERRQ(ierr); 938 ierr = VecScatterBegin(pcbddc->R_to_B,pcbddc->vec1_R,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 939 ierr = VecScatterEnd(pcbddc->R_to_B,pcbddc->vec1_R,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 940 if (i<n_vertices) { 941 y[n_B*i+idx_V_B[i]] = 1.0; 942 } 943 ierr = MatDenseRestoreArray(pcbddc->coarse_psi_B,&y);CHKERRQ(ierr); 944 ierr = VecResetArray(pcis->vec1_B);CHKERRQ(ierr); 945 946 if (pcbddc->switch_static || pcbddc->dbg_flag) { 947 ierr = MatDenseGetArray(pcbddc->coarse_psi_D,&y);CHKERRQ(ierr); 948 ierr = VecPlaceArray(pcis->vec1_D,y+n_D*i);CHKERRQ(ierr); 949 ierr = VecScatterBegin(pcbddc->R_to_D,pcbddc->vec1_R,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 950 ierr = VecScatterEnd(pcbddc->R_to_D,pcbddc->vec1_R,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 951 ierr = VecResetArray(pcis->vec1_D);CHKERRQ(ierr); 952 ierr = MatDenseRestoreArray(pcbddc->coarse_psi_D,&y);CHKERRQ(ierr); 953 } 954 ierr = VecResetArray(pcbddc->vec1_R);CHKERRQ(ierr); 955 } 956 ierr = MatDestroy(&X);CHKERRQ(ierr); 957 } 958 959 ierr = PetscFree(idx_V_B);CHKERRQ(ierr); 960 ierr = MatDestroy(&S_VV);CHKERRQ(ierr); 961 ierr = MatDestroy(&S_CV);CHKERRQ(ierr); 962 ierr = MatDestroy(&S_VC);CHKERRQ(ierr); 963 ierr = MatDestroy(&S_CC);CHKERRQ(ierr); 964 /* Checking coarse_sub_mat and coarse basis functios */ 965 /* Symmetric case : It should be \Phi^{(j)^T} A^{(j)} \Phi^{(j)}=coarse_sub_mat */ 966 /* Non-symmetric case : It should be \Psi^{(j)^T} A^{(j)} \Phi^{(j)}=coarse_sub_mat */ 967 if (pcbddc->dbg_flag) { 968 Mat coarse_sub_mat; 969 Mat AUXMAT,TM1,TM2,TM3,TM4; 970 Mat coarse_phi_D,coarse_phi_B; 971 Mat coarse_psi_D,coarse_psi_B; 972 Mat A_II,A_BB,A_IB,A_BI; 973 Mat C_B,CPHI; 974 IS is_dummy; 975 Vec mones; 976 MatType checkmattype=MATSEQAIJ; 977 PetscReal real_value; 978 979 ierr = MatConvert(pcis->A_II,checkmattype,MAT_INITIAL_MATRIX,&A_II);CHKERRQ(ierr); 980 ierr = MatConvert(pcis->A_IB,checkmattype,MAT_INITIAL_MATRIX,&A_IB);CHKERRQ(ierr); 981 ierr = MatConvert(pcis->A_BI,checkmattype,MAT_INITIAL_MATRIX,&A_BI);CHKERRQ(ierr); 982 ierr = MatConvert(pcis->A_BB,checkmattype,MAT_INITIAL_MATRIX,&A_BB);CHKERRQ(ierr); 983 ierr = MatConvert(pcbddc->coarse_phi_D,checkmattype,MAT_INITIAL_MATRIX,&coarse_phi_D);CHKERRQ(ierr); 984 ierr = MatConvert(pcbddc->coarse_phi_B,checkmattype,MAT_INITIAL_MATRIX,&coarse_phi_B);CHKERRQ(ierr); 985 if (unsymmetric_check) { 986 ierr = MatConvert(pcbddc->coarse_psi_D,checkmattype,MAT_INITIAL_MATRIX,&coarse_psi_D);CHKERRQ(ierr); 987 ierr = MatConvert(pcbddc->coarse_psi_B,checkmattype,MAT_INITIAL_MATRIX,&coarse_psi_B);CHKERRQ(ierr); 988 } 989 ierr = MatCreateSeqDense(PETSC_COMM_SELF,pcbddc->local_primal_size,pcbddc->local_primal_size,coarse_submat_vals,&coarse_sub_mat);CHKERRQ(ierr); 990 991 ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"--------------------------------------------------\n");CHKERRQ(ierr); 992 ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"Check coarse sub mat computation\n");CHKERRQ(ierr); 993 ierr = PetscViewerFlush(pcbddc->dbg_viewer);CHKERRQ(ierr); 994 if (unsymmetric_check) { 995 ierr = MatMatMult(A_II,coarse_phi_D,MAT_INITIAL_MATRIX,1.0,&AUXMAT);CHKERRQ(ierr); 996 ierr = MatTransposeMatMult(coarse_psi_D,AUXMAT,MAT_INITIAL_MATRIX,1.0,&TM1);CHKERRQ(ierr); 997 ierr = MatDestroy(&AUXMAT);CHKERRQ(ierr); 998 ierr = MatMatMult(A_BB,coarse_phi_B,MAT_INITIAL_MATRIX,1.0,&AUXMAT);CHKERRQ(ierr); 999 ierr = MatTransposeMatMult(coarse_psi_B,AUXMAT,MAT_INITIAL_MATRIX,1.0,&TM2);CHKERRQ(ierr); 1000 ierr = MatDestroy(&AUXMAT);CHKERRQ(ierr); 1001 ierr = MatMatMult(A_IB,coarse_phi_B,MAT_INITIAL_MATRIX,1.0,&AUXMAT);CHKERRQ(ierr); 1002 ierr = MatTransposeMatMult(coarse_psi_D,AUXMAT,MAT_INITIAL_MATRIX,1.0,&TM3);CHKERRQ(ierr); 1003 ierr = MatDestroy(&AUXMAT);CHKERRQ(ierr); 1004 ierr = MatMatMult(A_BI,coarse_phi_D,MAT_INITIAL_MATRIX,1.0,&AUXMAT);CHKERRQ(ierr); 1005 ierr = MatTransposeMatMult(coarse_psi_B,AUXMAT,MAT_INITIAL_MATRIX,1.0,&TM4);CHKERRQ(ierr); 1006 ierr = MatDestroy(&AUXMAT);CHKERRQ(ierr); 1007 } else { 1008 ierr = MatPtAP(A_II,coarse_phi_D,MAT_INITIAL_MATRIX,1.0,&TM1);CHKERRQ(ierr); 1009 ierr = MatPtAP(A_BB,coarse_phi_B,MAT_INITIAL_MATRIX,1.0,&TM2);CHKERRQ(ierr); 1010 ierr = MatMatMult(A_IB,coarse_phi_B,MAT_INITIAL_MATRIX,1.0,&AUXMAT);CHKERRQ(ierr); 1011 ierr = MatTransposeMatMult(coarse_phi_D,AUXMAT,MAT_INITIAL_MATRIX,1.0,&TM3);CHKERRQ(ierr); 1012 ierr = MatDestroy(&AUXMAT);CHKERRQ(ierr); 1013 ierr = MatMatMult(A_BI,coarse_phi_D,MAT_INITIAL_MATRIX,1.0,&AUXMAT);CHKERRQ(ierr); 1014 ierr = MatTransposeMatMult(coarse_phi_B,AUXMAT,MAT_INITIAL_MATRIX,1.0,&TM4);CHKERRQ(ierr); 1015 ierr = MatDestroy(&AUXMAT);CHKERRQ(ierr); 1016 } 1017 ierr = MatAXPY(TM1,one,TM2,DIFFERENT_NONZERO_PATTERN);CHKERRQ(ierr); 1018 ierr = MatAXPY(TM1,one,TM3,DIFFERENT_NONZERO_PATTERN);CHKERRQ(ierr); 1019 ierr = MatAXPY(TM1,one,TM4,DIFFERENT_NONZERO_PATTERN);CHKERRQ(ierr); 1020 ierr = MatConvert(TM1,MATSEQDENSE,MAT_REUSE_MATRIX,&TM1);CHKERRQ(ierr); 1021 ierr = MatAXPY(TM1,m_one,coarse_sub_mat,DIFFERENT_NONZERO_PATTERN);CHKERRQ(ierr); 1022 ierr = MatNorm(TM1,NORM_FROBENIUS,&real_value);CHKERRQ(ierr); 1023 ierr = PetscViewerASCIISynchronizedAllow(pcbddc->dbg_viewer,PETSC_TRUE);CHKERRQ(ierr); 1024 ierr = PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"Subdomain %04d matrix error % 1.14e\n",PetscGlobalRank,real_value);CHKERRQ(ierr); 1025 1026 /* check constraints */ 1027 ierr = ISCreateStride(PETSC_COMM_SELF,pcbddc->local_primal_size,0,1,&is_dummy);CHKERRQ(ierr); 1028 ierr = MatGetSubMatrix(pcbddc->ConstraintMatrix,is_dummy,pcis->is_B_local,MAT_INITIAL_MATRIX,&C_B); 1029 ierr = MatMatMult(C_B,coarse_phi_B,MAT_INITIAL_MATRIX,1.0,&CPHI);CHKERRQ(ierr); 1030 ierr = MatCreateVecs(CPHI,&mones,NULL);CHKERRQ(ierr); 1031 ierr = VecSet(mones,-1.0);CHKERRQ(ierr); 1032 ierr = MatDiagonalSet(CPHI,mones,ADD_VALUES);CHKERRQ(ierr); 1033 ierr = MatNorm(CPHI,NORM_FROBENIUS,&real_value);CHKERRQ(ierr); 1034 ierr = PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"Subdomain %04d constraints error % 1.14e\n",PetscGlobalRank,real_value);CHKERRQ(ierr); 1035 ierr = MatDestroy(&C_B);CHKERRQ(ierr); 1036 ierr = MatDestroy(&CPHI);CHKERRQ(ierr); 1037 ierr = ISDestroy(&is_dummy);CHKERRQ(ierr); 1038 ierr = VecDestroy(&mones);CHKERRQ(ierr); 1039 1040 ierr = PetscViewerFlush(pcbddc->dbg_viewer);CHKERRQ(ierr); 1041 ierr = MatDestroy(&A_II);CHKERRQ(ierr); 1042 ierr = MatDestroy(&A_BB);CHKERRQ(ierr); 1043 ierr = MatDestroy(&A_IB);CHKERRQ(ierr); 1044 ierr = MatDestroy(&A_BI);CHKERRQ(ierr); 1045 ierr = MatDestroy(&TM1);CHKERRQ(ierr); 1046 ierr = MatDestroy(&TM2);CHKERRQ(ierr); 1047 ierr = MatDestroy(&TM3);CHKERRQ(ierr); 1048 ierr = MatDestroy(&TM4);CHKERRQ(ierr); 1049 ierr = MatDestroy(&coarse_phi_D);CHKERRQ(ierr); 1050 ierr = MatDestroy(&coarse_phi_B);CHKERRQ(ierr); 1051 if (unsymmetric_check) { 1052 ierr = MatDestroy(&coarse_psi_D);CHKERRQ(ierr); 1053 ierr = MatDestroy(&coarse_psi_B);CHKERRQ(ierr); 1054 } 1055 ierr = MatDestroy(&coarse_sub_mat);CHKERRQ(ierr); 1056 } 1057 1058 /* free memory */ 1059 ierr = PetscFree(work);CHKERRQ(ierr); 1060 if (n_vertices) { 1061 ierr = MatDestroy(&A_VR);CHKERRQ(ierr); 1062 } 1063 if (n_constraints) { 1064 ierr = MatDestroy(&C_CR);CHKERRQ(ierr); 1065 } 1066 /* get back data */ 1067 *coarse_submat_vals_n = coarse_submat_vals; 1068 PetscFunctionReturn(0); 1069 } 1070 1071 #undef __FUNCT__ 1072 #define __FUNCT__ "MatGetSubMatrixUnsorted" 1073 PetscErrorCode MatGetSubMatrixUnsorted(Mat A, IS isrow, IS iscol, Mat* B) 1074 { 1075 Mat *work_mat; 1076 IS isrow_s,iscol_s; 1077 PetscBool rsorted,csorted; 1078 PetscInt rsize,*idxs_perm_r,csize,*idxs_perm_c; 1079 PetscErrorCode ierr; 1080 1081 PetscFunctionBegin; 1082 ierr = ISSorted(isrow,&rsorted);CHKERRQ(ierr); 1083 ierr = ISSorted(iscol,&csorted);CHKERRQ(ierr); 1084 ierr = ISGetLocalSize(isrow,&rsize);CHKERRQ(ierr); 1085 ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 1086 1087 if (!rsorted) { 1088 const PetscInt *idxs; 1089 PetscInt *idxs_sorted,i; 1090 1091 ierr = PetscMalloc1(rsize,&idxs_perm_r);CHKERRQ(ierr); 1092 ierr = PetscMalloc1(rsize,&idxs_sorted);CHKERRQ(ierr); 1093 for (i=0;i<rsize;i++) { 1094 idxs_perm_r[i] = i; 1095 } 1096 ierr = ISGetIndices(isrow,&idxs);CHKERRQ(ierr); 1097 ierr = PetscSortIntWithPermutation(rsize,idxs,idxs_perm_r);CHKERRQ(ierr); 1098 for (i=0;i<rsize;i++) { 1099 idxs_sorted[i] = idxs[idxs_perm_r[i]]; 1100 } 1101 ierr = ISRestoreIndices(isrow,&idxs);CHKERRQ(ierr); 1102 ierr = ISCreateGeneral(PETSC_COMM_SELF,rsize,idxs_sorted,PETSC_OWN_POINTER,&isrow_s);CHKERRQ(ierr); 1103 } else { 1104 ierr = PetscObjectReference((PetscObject)isrow);CHKERRQ(ierr); 1105 isrow_s = isrow; 1106 } 1107 1108 if (!csorted) { 1109 if (isrow == iscol) { 1110 ierr = PetscObjectReference((PetscObject)isrow_s);CHKERRQ(ierr); 1111 iscol_s = isrow_s; 1112 } else { 1113 const PetscInt *idxs; 1114 PetscInt *idxs_sorted,i; 1115 1116 ierr = PetscMalloc1(csize,&idxs_perm_c);CHKERRQ(ierr); 1117 ierr = PetscMalloc1(csize,&idxs_sorted);CHKERRQ(ierr); 1118 for (i=0;i<csize;i++) { 1119 idxs_perm_c[i] = i; 1120 } 1121 ierr = ISGetIndices(iscol,&idxs);CHKERRQ(ierr); 1122 ierr = PetscSortIntWithPermutation(csize,idxs,idxs_perm_c);CHKERRQ(ierr); 1123 for (i=0;i<csize;i++) { 1124 idxs_sorted[i] = idxs[idxs_perm_c[i]]; 1125 } 1126 ierr = ISRestoreIndices(iscol,&idxs);CHKERRQ(ierr); 1127 ierr = ISCreateGeneral(PETSC_COMM_SELF,csize,idxs_sorted,PETSC_OWN_POINTER,&iscol_s);CHKERRQ(ierr); 1128 } 1129 } else { 1130 ierr = PetscObjectReference((PetscObject)iscol);CHKERRQ(ierr); 1131 iscol_s = iscol; 1132 } 1133 1134 ierr = MatGetSubMatrices(A,1,&isrow_s,&iscol_s,MAT_INITIAL_MATRIX,&work_mat);CHKERRQ(ierr); 1135 1136 if (!rsorted || !csorted) { 1137 Mat new_mat; 1138 IS is_perm_r,is_perm_c; 1139 1140 if (!rsorted) { 1141 PetscInt *idxs_r,i; 1142 ierr = PetscMalloc1(rsize,&idxs_r);CHKERRQ(ierr); 1143 for (i=0;i<rsize;i++) { 1144 idxs_r[idxs_perm_r[i]] = i; 1145 } 1146 ierr = PetscFree(idxs_perm_r);CHKERRQ(ierr); 1147 ierr = ISCreateGeneral(PETSC_COMM_SELF,rsize,idxs_r,PETSC_OWN_POINTER,&is_perm_r);CHKERRQ(ierr); 1148 } else { 1149 ierr = ISCreateStride(PETSC_COMM_SELF,rsize,0,1,&is_perm_r);CHKERRQ(ierr); 1150 } 1151 ierr = ISSetPermutation(is_perm_r);CHKERRQ(ierr); 1152 1153 if (!csorted) { 1154 if (isrow_s == iscol_s) { 1155 ierr = PetscObjectReference((PetscObject)is_perm_r);CHKERRQ(ierr); 1156 is_perm_c = is_perm_r; 1157 } else { 1158 PetscInt *idxs_c,i; 1159 ierr = PetscMalloc1(csize,&idxs_c);CHKERRQ(ierr); 1160 for (i=0;i<csize;i++) { 1161 idxs_c[idxs_perm_c[i]] = i; 1162 } 1163 ierr = PetscFree(idxs_perm_c);CHKERRQ(ierr); 1164 ierr = ISCreateGeneral(PETSC_COMM_SELF,csize,idxs_c,PETSC_OWN_POINTER,&is_perm_c);CHKERRQ(ierr); 1165 } 1166 } else { 1167 ierr = ISCreateStride(PETSC_COMM_SELF,csize,0,1,&is_perm_c);CHKERRQ(ierr); 1168 } 1169 ierr = ISSetPermutation(is_perm_c);CHKERRQ(ierr); 1170 1171 ierr = MatPermute(work_mat[0],is_perm_r,is_perm_c,&new_mat);CHKERRQ(ierr); 1172 ierr = MatDestroy(&work_mat[0]);CHKERRQ(ierr); 1173 work_mat[0] = new_mat; 1174 ierr = ISDestroy(&is_perm_r);CHKERRQ(ierr); 1175 ierr = ISDestroy(&is_perm_c);CHKERRQ(ierr); 1176 } 1177 1178 ierr = PetscObjectReference((PetscObject)work_mat[0]);CHKERRQ(ierr); 1179 *B = work_mat[0]; 1180 ierr = MatDestroyMatrices(1,&work_mat);CHKERRQ(ierr); 1181 ierr = ISDestroy(&isrow_s);CHKERRQ(ierr); 1182 ierr = ISDestroy(&iscol_s);CHKERRQ(ierr); 1183 PetscFunctionReturn(0); 1184 } 1185 1186 #undef __FUNCT__ 1187 #define __FUNCT__ "PCBDDCComputeLocalMatrix" 1188 PetscErrorCode PCBDDCComputeLocalMatrix(PC pc, Mat ChangeOfBasisMatrix) 1189 { 1190 Mat_IS* matis = (Mat_IS*)pc->pmat->data; 1191 PC_BDDC* pcbddc = (PC_BDDC*)pc->data; 1192 Mat new_mat; 1193 IS is_local,is_global; 1194 PetscInt local_size; 1195 PetscBool isseqaij; 1196 PetscErrorCode ierr; 1197 1198 PetscFunctionBegin; 1199 ierr = MatDestroy(&pcbddc->local_mat);CHKERRQ(ierr); 1200 ierr = MatGetSize(matis->A,&local_size,NULL);CHKERRQ(ierr); 1201 ierr = ISCreateStride(PetscObjectComm((PetscObject)matis->A),local_size,0,1,&is_local);CHKERRQ(ierr); 1202 ierr = ISLocalToGlobalMappingApplyIS(matis->mapping,is_local,&is_global);CHKERRQ(ierr); 1203 ierr = ISDestroy(&is_local);CHKERRQ(ierr); 1204 ierr = MatGetSubMatrixUnsorted(ChangeOfBasisMatrix,is_global,is_global,&new_mat);CHKERRQ(ierr); 1205 ierr = ISDestroy(&is_global);CHKERRQ(ierr); 1206 1207 /* check */ 1208 if (pcbddc->dbg_flag) { 1209 Vec x,x_change; 1210 PetscReal error; 1211 1212 ierr = MatCreateVecs(ChangeOfBasisMatrix,&x,&x_change);CHKERRQ(ierr); 1213 ierr = VecSetRandom(x,NULL);CHKERRQ(ierr); 1214 ierr = MatMult(ChangeOfBasisMatrix,x,x_change);CHKERRQ(ierr); 1215 ierr = VecScatterBegin(matis->ctx,x,matis->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1216 ierr = VecScatterEnd(matis->ctx,x,matis->x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1217 ierr = MatMult(new_mat,matis->x,matis->y);CHKERRQ(ierr); 1218 ierr = VecScatterBegin(matis->ctx,matis->y,x,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1219 ierr = VecScatterEnd(matis->ctx,matis->y,x,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1220 ierr = VecAXPY(x,-1.0,x_change);CHKERRQ(ierr); 1221 ierr = VecNorm(x,NORM_INFINITY,&error);CHKERRQ(ierr); 1222 ierr = PetscViewerFlush(pcbddc->dbg_viewer);CHKERRQ(ierr); 1223 ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"Error global vs local change on N: %1.6e\n",error);CHKERRQ(ierr); 1224 ierr = VecDestroy(&x);CHKERRQ(ierr); 1225 ierr = VecDestroy(&x_change);CHKERRQ(ierr); 1226 } 1227 1228 /* TODO: HOW TO WORK WITH BAIJ and SBAIJ and SEQDENSE? */ 1229 ierr = PetscObjectTypeCompare((PetscObject)matis->A,MATSEQAIJ,&isseqaij);CHKERRQ(ierr); 1230 if (isseqaij) { 1231 ierr = MatPtAP(matis->A,new_mat,MAT_INITIAL_MATRIX,2.0,&pcbddc->local_mat);CHKERRQ(ierr); 1232 } else { 1233 Mat work_mat; 1234 ierr = MatConvert(matis->A,MATSEQAIJ,MAT_INITIAL_MATRIX,&work_mat);CHKERRQ(ierr); 1235 ierr = MatPtAP(work_mat,new_mat,MAT_INITIAL_MATRIX,2.0,&pcbddc->local_mat);CHKERRQ(ierr); 1236 ierr = MatDestroy(&work_mat);CHKERRQ(ierr); 1237 } 1238 ierr = MatSetOption(pcbddc->local_mat,MAT_SYMMETRIC,pcbddc->issym);CHKERRQ(ierr); 1239 #if !defined(PETSC_USE_COMPLEX) 1240 ierr = MatSetOption(pcbddc->local_mat,MAT_HERMITIAN,pcbddc->issym);CHKERRQ(ierr); 1241 #endif 1242 /* 1243 ierr = PetscViewerSetFormat(PETSC_VIEWER_STDOUT_SELF,PETSC_VIEWER_ASCII_MATLAB);CHKERRQ(ierr); 1244 ierr = MatView(new_mat,(PetscViewer)0);CHKERRQ(ierr); 1245 */ 1246 ierr = MatDestroy(&new_mat);CHKERRQ(ierr); 1247 PetscFunctionReturn(0); 1248 } 1249 1250 #undef __FUNCT__ 1251 #define __FUNCT__ "PCBDDCSetUpLocalScatters" 1252 PetscErrorCode PCBDDCSetUpLocalScatters(PC pc) 1253 { 1254 PC_IS* pcis = (PC_IS*)(pc->data); 1255 PC_BDDC* pcbddc = (PC_BDDC*)pc->data; 1256 IS is_aux1,is_aux2; 1257 PetscInt *aux_array1,*aux_array2,*is_indices,*idx_R_local; 1258 PetscInt n_vertices,i,j,n_R,n_D,n_B; 1259 PetscInt vbs,bs; 1260 PetscBT bitmask; 1261 PetscErrorCode ierr; 1262 1263 PetscFunctionBegin; 1264 /* 1265 No need to setup local scatters if 1266 - primal space is unchanged 1267 AND 1268 - we actually have locally some primal dofs (could not be true in multilevel or for isolated subdomains) 1269 AND 1270 - we are not in debugging mode (this is needed since there are Synchronized prints at the end of the subroutine 1271 */ 1272 if (!pcbddc->new_primal_space_local && pcbddc->local_primal_size && !pcbddc->dbg_flag) { 1273 PetscFunctionReturn(0); 1274 } 1275 /* destroy old objects */ 1276 ierr = ISDestroy(&pcbddc->is_R_local);CHKERRQ(ierr); 1277 ierr = VecScatterDestroy(&pcbddc->R_to_B);CHKERRQ(ierr); 1278 ierr = VecScatterDestroy(&pcbddc->R_to_D);CHKERRQ(ierr); 1279 /* Set Non-overlapping dimensions */ 1280 n_B = pcis->n_B; n_D = pcis->n - n_B; 1281 n_vertices = pcbddc->n_actual_vertices; 1282 /* create auxiliary bitmask */ 1283 ierr = PetscBTCreate(pcis->n,&bitmask);CHKERRQ(ierr); 1284 for (i=0;i<n_vertices;i++) { 1285 ierr = PetscBTSet(bitmask,pcbddc->primal_indices_local_idxs[i]);CHKERRQ(ierr); 1286 } 1287 1288 /* Dohrmann's notation: dofs splitted in R (Remaining: all dofs but the vertices) and V (Vertices) */ 1289 ierr = PetscMalloc1(pcis->n-n_vertices,&idx_R_local);CHKERRQ(ierr); 1290 for (i=0, n_R=0; i<pcis->n; i++) { 1291 if (!PetscBTLookup(bitmask,i)) { 1292 idx_R_local[n_R] = i; 1293 n_R++; 1294 } 1295 } 1296 1297 /* Block code */ 1298 vbs = 1; 1299 ierr = MatGetBlockSize(pcbddc->local_mat,&bs);CHKERRQ(ierr); 1300 if (bs>1 && !(n_vertices%bs)) { 1301 PetscBool is_blocked = PETSC_TRUE; 1302 PetscInt *vary; 1303 /* Verify if the vertex indices correspond to each element in a block (code taken from sbaij2.c) */ 1304 ierr = PetscMalloc1(pcis->n/bs,&vary);CHKERRQ(ierr); 1305 ierr = PetscMemzero(vary,pcis->n/bs*sizeof(PetscInt));CHKERRQ(ierr); 1306 for (i=0; i<n_vertices; i++) vary[pcbddc->primal_indices_local_idxs[i]/bs]++; 1307 for (i=0; i<n_vertices/bs; i++) { 1308 if (vary[i]!=0 && vary[i]!=bs) { 1309 is_blocked = PETSC_FALSE; 1310 break; 1311 } 1312 } 1313 if (is_blocked) { /* build compressed IS for R nodes (complement of vertices) */ 1314 vbs = bs; 1315 for (i=0;i<n_R/vbs;i++) { 1316 idx_R_local[i] = idx_R_local[vbs*i]/vbs; 1317 } 1318 } 1319 ierr = PetscFree(vary);CHKERRQ(ierr); 1320 } 1321 ierr = ISCreateBlock(PETSC_COMM_SELF,vbs,n_R/vbs,idx_R_local,PETSC_COPY_VALUES,&pcbddc->is_R_local);CHKERRQ(ierr); 1322 ierr = PetscFree(idx_R_local);CHKERRQ(ierr); 1323 1324 /* print some info if requested */ 1325 if (pcbddc->dbg_flag) { 1326 ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"--------------------------------------------------\n");CHKERRQ(ierr); 1327 ierr = PetscViewerFlush(pcbddc->dbg_viewer);CHKERRQ(ierr); 1328 ierr = PetscViewerASCIISynchronizedAllow(pcbddc->dbg_viewer,PETSC_TRUE);CHKERRQ(ierr); 1329 ierr = PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"Subdomain %04d local dimensions\n",PetscGlobalRank);CHKERRQ(ierr); 1330 ierr = PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"local_size = %d, dirichlet_size = %d, boundary_size = %d\n",pcis->n,n_D,n_B);CHKERRQ(ierr); 1331 ierr = PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"r_size = %d, v_size = %d, constraints = %d, local_primal_size = %d\n",n_R,n_vertices,pcbddc->local_primal_size-n_vertices,pcbddc->local_primal_size);CHKERRQ(ierr); 1332 ierr = PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"pcbddc->n_vertices = %d, pcbddc->n_constraints = %d\n",pcbddc->n_vertices,pcbddc->n_constraints);CHKERRQ(ierr); 1333 ierr = PetscViewerFlush(pcbddc->dbg_viewer);CHKERRQ(ierr); 1334 } 1335 1336 /* VecScatters pcbddc->R_to_B and (optionally) pcbddc->R_to_D */ 1337 ierr = ISGetIndices(pcbddc->is_R_local,(const PetscInt**)&idx_R_local);CHKERRQ(ierr); 1338 ierr = PetscMalloc1(pcis->n_B-n_vertices,&aux_array1);CHKERRQ(ierr); 1339 ierr = PetscMalloc1(pcis->n_B-n_vertices,&aux_array2);CHKERRQ(ierr); 1340 ierr = ISGetIndices(pcis->is_I_local,(const PetscInt**)&is_indices);CHKERRQ(ierr); 1341 for (i=0; i<n_D; i++) { 1342 ierr = PetscBTSet(bitmask,is_indices[i]);CHKERRQ(ierr); 1343 } 1344 ierr = ISRestoreIndices(pcis->is_I_local,(const PetscInt**)&is_indices);CHKERRQ(ierr); 1345 for (i=0, j=0; i<n_R; i++) { 1346 if (!PetscBTLookup(bitmask,idx_R_local[i])) { 1347 aux_array1[j++] = i; 1348 } 1349 } 1350 ierr = ISCreateGeneral(PETSC_COMM_SELF,j,aux_array1,PETSC_OWN_POINTER,&is_aux1);CHKERRQ(ierr); 1351 ierr = ISGetIndices(pcis->is_B_local,(const PetscInt**)&is_indices);CHKERRQ(ierr); 1352 for (i=0, j=0; i<n_B; i++) { 1353 if (!PetscBTLookup(bitmask,is_indices[i])) { 1354 aux_array2[j++] = i; 1355 } 1356 } 1357 ierr = ISRestoreIndices(pcis->is_B_local,(const PetscInt**)&is_indices);CHKERRQ(ierr); 1358 ierr = ISCreateGeneral(PETSC_COMM_SELF,j,aux_array2,PETSC_OWN_POINTER,&is_aux2);CHKERRQ(ierr); 1359 ierr = VecScatterCreate(pcbddc->vec1_R,is_aux1,pcis->vec1_B,is_aux2,&pcbddc->R_to_B);CHKERRQ(ierr); 1360 ierr = ISDestroy(&is_aux1);CHKERRQ(ierr); 1361 ierr = ISDestroy(&is_aux2);CHKERRQ(ierr); 1362 1363 if (pcbddc->switch_static || pcbddc->dbg_flag) { 1364 ierr = PetscMalloc1(n_D,&aux_array1);CHKERRQ(ierr); 1365 for (i=0, j=0; i<n_R; i++) { 1366 if (PetscBTLookup(bitmask,idx_R_local[i])) { 1367 aux_array1[j++] = i; 1368 } 1369 } 1370 ierr = ISCreateGeneral(PETSC_COMM_SELF,j,aux_array1,PETSC_OWN_POINTER,&is_aux1);CHKERRQ(ierr); 1371 ierr = VecScatterCreate(pcbddc->vec1_R,is_aux1,pcis->vec1_D,(IS)0,&pcbddc->R_to_D);CHKERRQ(ierr); 1372 ierr = ISDestroy(&is_aux1);CHKERRQ(ierr); 1373 } 1374 ierr = PetscBTDestroy(&bitmask);CHKERRQ(ierr); 1375 ierr = ISRestoreIndices(pcbddc->is_R_local,(const PetscInt**)&idx_R_local);CHKERRQ(ierr); 1376 PetscFunctionReturn(0); 1377 } 1378 1379 1380 #undef __FUNCT__ 1381 #define __FUNCT__ "PCBDDCSetUpLocalSolvers" 1382 PetscErrorCode PCBDDCSetUpLocalSolvers(PC pc, PetscBool dirichlet, PetscBool neumann) 1383 { 1384 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 1385 PC_IS *pcis = (PC_IS*)pc->data; 1386 PC pc_temp; 1387 Mat A_RR; 1388 MatReuse reuse; 1389 PetscScalar m_one = -1.0; 1390 PetscReal value; 1391 PetscInt n_D,n_R,ibs,mbs; 1392 PetscBool use_exact,use_exact_reduced,issbaij; 1393 PetscErrorCode ierr; 1394 /* prefixes stuff */ 1395 char dir_prefix[256],neu_prefix[256],str_level[16]; 1396 size_t len; 1397 1398 PetscFunctionBegin; 1399 1400 /* compute prefixes */ 1401 ierr = PetscStrcpy(dir_prefix,"");CHKERRQ(ierr); 1402 ierr = PetscStrcpy(neu_prefix,"");CHKERRQ(ierr); 1403 if (!pcbddc->current_level) { 1404 ierr = PetscStrcpy(dir_prefix,((PetscObject)pc)->prefix);CHKERRQ(ierr); 1405 ierr = PetscStrcpy(neu_prefix,((PetscObject)pc)->prefix);CHKERRQ(ierr); 1406 ierr = PetscStrcat(dir_prefix,"pc_bddc_dirichlet_");CHKERRQ(ierr); 1407 ierr = PetscStrcat(neu_prefix,"pc_bddc_neumann_");CHKERRQ(ierr); 1408 } else { 1409 ierr = PetscStrcpy(str_level,"");CHKERRQ(ierr); 1410 sprintf(str_level,"l%d_",(int)(pcbddc->current_level)); 1411 ierr = PetscStrlen(((PetscObject)pc)->prefix,&len);CHKERRQ(ierr); 1412 len -= 15; /* remove "pc_bddc_coarse_" */ 1413 if (pcbddc->current_level>1) len -= 3; /* remove "lX_" with X level number */ 1414 if (pcbddc->current_level>10) len -= 1; /* remove another char from level number */ 1415 ierr = PetscStrncpy(dir_prefix,((PetscObject)pc)->prefix,len+1);CHKERRQ(ierr); 1416 ierr = PetscStrncpy(neu_prefix,((PetscObject)pc)->prefix,len+1);CHKERRQ(ierr); 1417 ierr = PetscStrcat(dir_prefix,"pc_bddc_dirichlet_");CHKERRQ(ierr); 1418 ierr = PetscStrcat(neu_prefix,"pc_bddc_neumann_");CHKERRQ(ierr); 1419 ierr = PetscStrcat(dir_prefix,str_level);CHKERRQ(ierr); 1420 ierr = PetscStrcat(neu_prefix,str_level);CHKERRQ(ierr); 1421 } 1422 1423 /* DIRICHLET PROBLEM */ 1424 if (dirichlet) { 1425 PCBDDCSubSchurs sub_schurs = pcbddc->sub_schurs; 1426 if (pcbddc->issym) { 1427 ierr = MatSetOption(pcis->A_II,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 1428 } 1429 /* Matrix for Dirichlet problem is pcis->A_II */ 1430 n_D = pcis->n - pcis->n_B; 1431 if (!pcbddc->ksp_D) { /* create object if not yet build */ 1432 ierr = KSPCreate(PETSC_COMM_SELF,&pcbddc->ksp_D);CHKERRQ(ierr); 1433 ierr = PetscObjectIncrementTabLevel((PetscObject)pcbddc->ksp_D,(PetscObject)pc,1);CHKERRQ(ierr); 1434 /* default */ 1435 ierr = KSPSetType(pcbddc->ksp_D,KSPPREONLY);CHKERRQ(ierr); 1436 ierr = KSPSetOptionsPrefix(pcbddc->ksp_D,dir_prefix);CHKERRQ(ierr); 1437 ierr = PetscObjectTypeCompare((PetscObject)pcis->A_II,MATSEQSBAIJ,&issbaij);CHKERRQ(ierr); 1438 ierr = KSPGetPC(pcbddc->ksp_D,&pc_temp);CHKERRQ(ierr); 1439 if (issbaij) { 1440 ierr = PCSetType(pc_temp,PCCHOLESKY);CHKERRQ(ierr); 1441 } else { 1442 ierr = PCSetType(pc_temp,PCLU);CHKERRQ(ierr); 1443 } 1444 /* Allow user's customization */ 1445 ierr = KSPSetFromOptions(pcbddc->ksp_D);CHKERRQ(ierr); 1446 ierr = PCFactorSetReuseFill(pc_temp,PETSC_TRUE);CHKERRQ(ierr); 1447 } 1448 ierr = KSPSetOperators(pcbddc->ksp_D,pcis->A_II,pcis->A_II);CHKERRQ(ierr); 1449 if (sub_schurs->interior_solver) { 1450 ierr = KSPSetPC(pcbddc->ksp_D,sub_schurs->interior_solver);CHKERRQ(ierr); 1451 } 1452 /* umfpack interface has a bug when matrix dimension is zero. TODO solve from umfpack interface */ 1453 if (!n_D) { 1454 ierr = KSPGetPC(pcbddc->ksp_D,&pc_temp);CHKERRQ(ierr); 1455 ierr = PCSetType(pc_temp,PCNONE);CHKERRQ(ierr); 1456 } 1457 /* Set Up KSP for Dirichlet problem of BDDC */ 1458 ierr = KSPSetUp(pcbddc->ksp_D);CHKERRQ(ierr); 1459 /* set ksp_D into pcis data */ 1460 ierr = KSPDestroy(&pcis->ksp_D);CHKERRQ(ierr); 1461 ierr = PetscObjectReference((PetscObject)pcbddc->ksp_D);CHKERRQ(ierr); 1462 pcis->ksp_D = pcbddc->ksp_D; 1463 } 1464 1465 /* NEUMANN PROBLEM */ 1466 A_RR = 0; 1467 if (neumann) { 1468 /* Matrix for Neumann problem is A_RR -> we need to create/reuse it at this point */ 1469 ierr = ISGetSize(pcbddc->is_R_local,&n_R);CHKERRQ(ierr); 1470 if (pcbddc->ksp_R) { /* already created ksp */ 1471 PetscInt nn_R; 1472 ierr = KSPGetOperators(pcbddc->ksp_R,NULL,&A_RR);CHKERRQ(ierr); 1473 ierr = PetscObjectReference((PetscObject)A_RR);CHKERRQ(ierr); 1474 ierr = MatGetSize(A_RR,&nn_R,NULL);CHKERRQ(ierr); 1475 if (nn_R != n_R) { /* old ksp is not reusable, so reset it */ 1476 ierr = KSPReset(pcbddc->ksp_R);CHKERRQ(ierr); 1477 ierr = MatDestroy(&A_RR);CHKERRQ(ierr); 1478 reuse = MAT_INITIAL_MATRIX; 1479 } else { /* same sizes, but nonzero pattern depend on primal vertices so it can be changed */ 1480 if (pcbddc->new_primal_space_local) { /* we are not sure the matrix will have the same nonzero pattern */ 1481 ierr = MatDestroy(&A_RR);CHKERRQ(ierr); 1482 reuse = MAT_INITIAL_MATRIX; 1483 } else { /* safe to reuse the matrix */ 1484 reuse = MAT_REUSE_MATRIX; 1485 } 1486 } 1487 /* last check */ 1488 if (pc->flag == DIFFERENT_NONZERO_PATTERN) { 1489 ierr = MatDestroy(&A_RR);CHKERRQ(ierr); 1490 reuse = MAT_INITIAL_MATRIX; 1491 } 1492 } else { /* first time, so we need to create the matrix */ 1493 reuse = MAT_INITIAL_MATRIX; 1494 } 1495 /* extract A_RR */ 1496 ierr = MatGetBlockSize(pcbddc->local_mat,&mbs);CHKERRQ(ierr); 1497 ierr = ISGetBlockSize(pcbddc->is_R_local,&ibs);CHKERRQ(ierr); 1498 if (ibs != mbs) { 1499 Mat newmat; 1500 ierr = MatConvert(pcbddc->local_mat,MATSEQAIJ,MAT_INITIAL_MATRIX,&newmat);CHKERRQ(ierr); 1501 ierr = MatGetSubMatrix(newmat,pcbddc->is_R_local,pcbddc->is_R_local,reuse,&A_RR);CHKERRQ(ierr); 1502 ierr = MatDestroy(&newmat);CHKERRQ(ierr); 1503 } else { 1504 ierr = MatGetSubMatrix(pcbddc->local_mat,pcbddc->is_R_local,pcbddc->is_R_local,reuse,&A_RR);CHKERRQ(ierr); 1505 } 1506 if (pcbddc->issym) { 1507 ierr = MatSetOption(A_RR,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 1508 } 1509 if (!pcbddc->ksp_R) { /* create object if not present */ 1510 ierr = KSPCreate(PETSC_COMM_SELF,&pcbddc->ksp_R);CHKERRQ(ierr); 1511 ierr = PetscObjectIncrementTabLevel((PetscObject)pcbddc->ksp_R,(PetscObject)pc,1);CHKERRQ(ierr); 1512 /* default */ 1513 ierr = KSPSetType(pcbddc->ksp_R,KSPPREONLY);CHKERRQ(ierr); 1514 ierr = KSPSetOptionsPrefix(pcbddc->ksp_R,neu_prefix);CHKERRQ(ierr); 1515 ierr = KSPGetPC(pcbddc->ksp_R,&pc_temp);CHKERRQ(ierr); 1516 ierr = PetscObjectTypeCompare((PetscObject)A_RR,MATSEQSBAIJ,&issbaij);CHKERRQ(ierr); 1517 if (issbaij) { 1518 ierr = PCSetType(pc_temp,PCCHOLESKY);CHKERRQ(ierr); 1519 } else { 1520 ierr = PCSetType(pc_temp,PCLU);CHKERRQ(ierr); 1521 } 1522 /* Allow user's customization */ 1523 ierr = KSPSetFromOptions(pcbddc->ksp_R);CHKERRQ(ierr); 1524 ierr = PCFactorSetReuseFill(pc_temp,PETSC_TRUE);CHKERRQ(ierr); 1525 } 1526 ierr = KSPSetOperators(pcbddc->ksp_R,A_RR,A_RR);CHKERRQ(ierr); 1527 /* umfpack interface has a bug when matrix dimension is zero. TODO solve from umfpack interface */ 1528 if (!n_R) { 1529 ierr = KSPGetPC(pcbddc->ksp_R,&pc_temp);CHKERRQ(ierr); 1530 ierr = PCSetType(pc_temp,PCNONE);CHKERRQ(ierr); 1531 } 1532 /* Set Up KSP for Neumann problem of BDDC */ 1533 ierr = KSPSetUp(pcbddc->ksp_R);CHKERRQ(ierr); 1534 } 1535 1536 /* check Dirichlet and Neumann solvers and adapt them if a nullspace correction is needed */ 1537 if (pcbddc->NullSpace || pcbddc->dbg_flag) { 1538 if (pcbddc->dbg_flag) { 1539 ierr = PetscViewerFlush(pcbddc->dbg_viewer);CHKERRQ(ierr); 1540 ierr = PetscViewerASCIISynchronizedAllow(pcbddc->dbg_viewer,PETSC_TRUE);CHKERRQ(ierr); 1541 ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"--------------------------------------------------\n");CHKERRQ(ierr); 1542 } 1543 if (dirichlet) { /* Dirichlet */ 1544 ierr = VecSetRandom(pcis->vec1_D,NULL);CHKERRQ(ierr); 1545 ierr = MatMult(pcis->A_II,pcis->vec1_D,pcis->vec2_D);CHKERRQ(ierr); 1546 ierr = KSPSolve(pcbddc->ksp_D,pcis->vec2_D,pcis->vec2_D);CHKERRQ(ierr); 1547 ierr = VecAXPY(pcis->vec1_D,m_one,pcis->vec2_D);CHKERRQ(ierr); 1548 ierr = VecNorm(pcis->vec1_D,NORM_INFINITY,&value);CHKERRQ(ierr); 1549 /* need to be adapted? */ 1550 use_exact = (PetscAbsReal(value) > 1.e-4 ? PETSC_FALSE : PETSC_TRUE); 1551 ierr = MPI_Allreduce(&use_exact,&use_exact_reduced,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)pc));CHKERRQ(ierr); 1552 ierr = PCBDDCSetUseExactDirichlet(pc,use_exact_reduced);CHKERRQ(ierr); 1553 /* print info */ 1554 if (pcbddc->dbg_flag) { 1555 ierr = PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"Subdomain %04d infinity error for Dirichlet solve (%s) = % 1.14e \n",PetscGlobalRank,((PetscObject)(pcbddc->ksp_D))->prefix,value);CHKERRQ(ierr); 1556 ierr = PetscViewerFlush(pcbddc->dbg_viewer);CHKERRQ(ierr); 1557 } 1558 if (pcbddc->NullSpace && !use_exact_reduced && !pcbddc->switch_static) { 1559 ierr = PCBDDCNullSpaceAssembleCorrection(pc,pcis->is_I_local);CHKERRQ(ierr); 1560 } 1561 } 1562 if (neumann) { /* Neumann */ 1563 ierr = VecSetRandom(pcbddc->vec1_R,NULL);CHKERRQ(ierr); 1564 ierr = MatMult(A_RR,pcbddc->vec1_R,pcbddc->vec2_R);CHKERRQ(ierr); 1565 ierr = KSPSolve(pcbddc->ksp_R,pcbddc->vec2_R,pcbddc->vec2_R);CHKERRQ(ierr); 1566 ierr = VecAXPY(pcbddc->vec1_R,m_one,pcbddc->vec2_R);CHKERRQ(ierr); 1567 ierr = VecNorm(pcbddc->vec1_R,NORM_INFINITY,&value);CHKERRQ(ierr); 1568 /* need to be adapted? */ 1569 use_exact = (PetscAbsReal(value) > 1.e-4 ? PETSC_FALSE : PETSC_TRUE); 1570 ierr = MPI_Allreduce(&use_exact,&use_exact_reduced,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)pc));CHKERRQ(ierr); 1571 /* print info */ 1572 if (pcbddc->dbg_flag) { 1573 ierr = PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"Subdomain %04d infinity error for Neumann solve (%s) = % 1.14e\n",PetscGlobalRank,((PetscObject)(pcbddc->ksp_R))->prefix,value);CHKERRQ(ierr); 1574 ierr = PetscViewerFlush(pcbddc->dbg_viewer);CHKERRQ(ierr); 1575 } 1576 if (pcbddc->NullSpace && !use_exact_reduced) { /* is it the right logic? */ 1577 ierr = PCBDDCNullSpaceAssembleCorrection(pc,pcbddc->is_R_local);CHKERRQ(ierr); 1578 } 1579 } 1580 } 1581 /* free Neumann problem's matrix */ 1582 ierr = MatDestroy(&A_RR);CHKERRQ(ierr); 1583 PetscFunctionReturn(0); 1584 } 1585 1586 #undef __FUNCT__ 1587 #define __FUNCT__ "PCBDDCSolveSubstructureCorrection" 1588 static PetscErrorCode PCBDDCSolveSubstructureCorrection(PC pc, Vec rhs, Vec sol, Vec work, PetscBool applytranspose) 1589 { 1590 PetscErrorCode ierr; 1591 PC_BDDC* pcbddc = (PC_BDDC*)(pc->data); 1592 1593 PetscFunctionBegin; 1594 if (applytranspose) { 1595 if (pcbddc->local_auxmat1) { 1596 ierr = MatMultTranspose(pcbddc->local_auxmat2,rhs,work);CHKERRQ(ierr); 1597 ierr = MatMultTransposeAdd(pcbddc->local_auxmat1,work,rhs,rhs);CHKERRQ(ierr); 1598 } 1599 ierr = KSPSolveTranspose(pcbddc->ksp_R,rhs,sol);CHKERRQ(ierr); 1600 } else { 1601 ierr = KSPSolve(pcbddc->ksp_R,rhs,sol);CHKERRQ(ierr); 1602 if (pcbddc->local_auxmat1) { 1603 ierr = MatMult(pcbddc->local_auxmat1,sol,work);CHKERRQ(ierr); 1604 ierr = MatMultAdd(pcbddc->local_auxmat2,work,sol,sol);CHKERRQ(ierr); 1605 } 1606 } 1607 PetscFunctionReturn(0); 1608 } 1609 1610 /* parameter apply transpose determines if the interface preconditioner should be applied transposed or not */ 1611 #undef __FUNCT__ 1612 #define __FUNCT__ "PCBDDCApplyInterfacePreconditioner" 1613 PetscErrorCode PCBDDCApplyInterfacePreconditioner(PC pc, PetscBool applytranspose) 1614 { 1615 PetscErrorCode ierr; 1616 PC_BDDC* pcbddc = (PC_BDDC*)(pc->data); 1617 PC_IS* pcis = (PC_IS*) (pc->data); 1618 const PetscScalar zero = 0.0; 1619 1620 PetscFunctionBegin; 1621 /* Application of PSI^T or PHI^T (depending on applytranspose, see comment above) */ 1622 if (applytranspose) { 1623 ierr = MatMultTranspose(pcbddc->coarse_phi_B,pcis->vec1_B,pcbddc->vec1_P);CHKERRQ(ierr); 1624 if (pcbddc->switch_static) { ierr = MatMultTransposeAdd(pcbddc->coarse_phi_D,pcis->vec1_D,pcbddc->vec1_P,pcbddc->vec1_P);CHKERRQ(ierr); } 1625 } else { 1626 ierr = MatMultTranspose(pcbddc->coarse_psi_B,pcis->vec1_B,pcbddc->vec1_P);CHKERRQ(ierr); 1627 if (pcbddc->switch_static) { ierr = MatMultTransposeAdd(pcbddc->coarse_psi_D,pcis->vec1_D,pcbddc->vec1_P,pcbddc->vec1_P);CHKERRQ(ierr); } 1628 } 1629 /* start communications from local primal nodes to rhs of coarse solver */ 1630 ierr = VecSet(pcbddc->coarse_vec,zero);CHKERRQ(ierr); 1631 ierr = PCBDDCScatterCoarseDataBegin(pc,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1632 ierr = PCBDDCScatterCoarseDataEnd(pc,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1633 1634 /* Coarse solution -> rhs and sol updated inside PCBDDCScattarCoarseDataBegin/End */ 1635 /* TODO remove null space when doing multilevel */ 1636 if (pcbddc->coarse_ksp) { 1637 Vec rhs,sol; 1638 1639 ierr = KSPGetRhs(pcbddc->coarse_ksp,&rhs);CHKERRQ(ierr); 1640 ierr = KSPGetSolution(pcbddc->coarse_ksp,&sol);CHKERRQ(ierr); 1641 if (applytranspose) { 1642 ierr = KSPSolveTranspose(pcbddc->coarse_ksp,rhs,sol);CHKERRQ(ierr); 1643 } else { 1644 ierr = KSPSolve(pcbddc->coarse_ksp,rhs,sol);CHKERRQ(ierr); 1645 } 1646 } 1647 1648 /* Local solution on R nodes */ 1649 if (pcis->n) { 1650 ierr = VecSet(pcbddc->vec1_R,zero);CHKERRQ(ierr); 1651 ierr = VecScatterBegin(pcbddc->R_to_B,pcis->vec1_B,pcbddc->vec1_R,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1652 ierr = VecScatterEnd(pcbddc->R_to_B,pcis->vec1_B,pcbddc->vec1_R,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1653 if (pcbddc->switch_static) { 1654 ierr = VecScatterBegin(pcbddc->R_to_D,pcis->vec1_D,pcbddc->vec1_R,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1655 ierr = VecScatterEnd(pcbddc->R_to_D,pcis->vec1_D,pcbddc->vec1_R,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1656 } 1657 ierr = PCBDDCSolveSubstructureCorrection(pc,pcbddc->vec1_R,pcbddc->vec2_R,pcbddc->vec1_C,applytranspose);CHKERRQ(ierr); 1658 ierr = VecSet(pcis->vec1_B,zero);CHKERRQ(ierr); 1659 ierr = VecScatterBegin(pcbddc->R_to_B,pcbddc->vec2_R,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1660 ierr = VecScatterEnd(pcbddc->R_to_B,pcbddc->vec2_R,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1661 if (pcbddc->switch_static) { 1662 ierr = VecScatterBegin(pcbddc->R_to_D,pcbddc->vec2_R,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1663 ierr = VecScatterEnd(pcbddc->R_to_D,pcbddc->vec2_R,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1664 } 1665 } 1666 1667 /* communications from coarse sol to local primal nodes */ 1668 ierr = PCBDDCScatterCoarseDataBegin(pc,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1669 ierr = PCBDDCScatterCoarseDataEnd(pc,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1670 1671 /* Sum contributions from two levels */ 1672 if (applytranspose) { 1673 ierr = MatMultAdd(pcbddc->coarse_psi_B,pcbddc->vec1_P,pcis->vec1_B,pcis->vec1_B);CHKERRQ(ierr); 1674 if (pcbddc->switch_static) { ierr = MatMultAdd(pcbddc->coarse_psi_D,pcbddc->vec1_P,pcis->vec1_D,pcis->vec1_D);CHKERRQ(ierr); } 1675 } else { 1676 ierr = MatMultAdd(pcbddc->coarse_phi_B,pcbddc->vec1_P,pcis->vec1_B,pcis->vec1_B);CHKERRQ(ierr); 1677 if (pcbddc->switch_static) { ierr = MatMultAdd(pcbddc->coarse_phi_D,pcbddc->vec1_P,pcis->vec1_D,pcis->vec1_D);CHKERRQ(ierr); } 1678 } 1679 PetscFunctionReturn(0); 1680 } 1681 1682 #undef __FUNCT__ 1683 #define __FUNCT__ "PCBDDCScatterCoarseDataBegin" 1684 PetscErrorCode PCBDDCScatterCoarseDataBegin(PC pc,InsertMode imode, ScatterMode smode) 1685 { 1686 PetscErrorCode ierr; 1687 PC_BDDC* pcbddc = (PC_BDDC*)(pc->data); 1688 PetscScalar *array; 1689 Vec from,to; 1690 1691 PetscFunctionBegin; 1692 if (smode == SCATTER_REVERSE) { /* from global to local -> get data from coarse solution */ 1693 from = pcbddc->coarse_vec; 1694 to = pcbddc->vec1_P; 1695 if (pcbddc->coarse_ksp) { /* get array from coarse processes */ 1696 Vec tvec; 1697 1698 ierr = KSPGetRhs(pcbddc->coarse_ksp,&tvec);CHKERRQ(ierr); 1699 ierr = VecResetArray(tvec);CHKERRQ(ierr); 1700 ierr = KSPGetSolution(pcbddc->coarse_ksp,&tvec);CHKERRQ(ierr); 1701 ierr = VecGetArray(tvec,&array);CHKERRQ(ierr); 1702 ierr = VecPlaceArray(from,array);CHKERRQ(ierr); 1703 ierr = VecRestoreArray(tvec,&array);CHKERRQ(ierr); 1704 } 1705 } else { /* from local to global -> put data in coarse right hand side */ 1706 from = pcbddc->vec1_P; 1707 to = pcbddc->coarse_vec; 1708 } 1709 ierr = VecScatterBegin(pcbddc->coarse_loc_to_glob,from,to,imode,smode);CHKERRQ(ierr); 1710 PetscFunctionReturn(0); 1711 } 1712 1713 #undef __FUNCT__ 1714 #define __FUNCT__ "PCBDDCScatterCoarseDataEnd" 1715 PetscErrorCode PCBDDCScatterCoarseDataEnd(PC pc, InsertMode imode, ScatterMode smode) 1716 { 1717 PetscErrorCode ierr; 1718 PC_BDDC* pcbddc = (PC_BDDC*)(pc->data); 1719 PetscScalar *array; 1720 Vec from,to; 1721 1722 PetscFunctionBegin; 1723 if (smode == SCATTER_REVERSE) { /* from global to local -> get data from coarse solution */ 1724 from = pcbddc->coarse_vec; 1725 to = pcbddc->vec1_P; 1726 } else { /* from local to global -> put data in coarse right hand side */ 1727 from = pcbddc->vec1_P; 1728 to = pcbddc->coarse_vec; 1729 } 1730 ierr = VecScatterEnd(pcbddc->coarse_loc_to_glob,from,to,imode,smode);CHKERRQ(ierr); 1731 if (smode == SCATTER_FORWARD) { 1732 if (pcbddc->coarse_ksp) { /* get array from coarse processes */ 1733 Vec tvec; 1734 1735 ierr = KSPGetRhs(pcbddc->coarse_ksp,&tvec);CHKERRQ(ierr); 1736 ierr = VecGetArray(to,&array);CHKERRQ(ierr); 1737 ierr = VecPlaceArray(tvec,array);CHKERRQ(ierr); 1738 ierr = VecRestoreArray(to,&array);CHKERRQ(ierr); 1739 } 1740 } else { 1741 if (pcbddc->coarse_ksp) { /* restore array of pcbddc->coarse_vec */ 1742 ierr = VecResetArray(from);CHKERRQ(ierr); 1743 } 1744 } 1745 PetscFunctionReturn(0); 1746 } 1747 1748 /* uncomment for testing purposes */ 1749 /* #define PETSC_MISSING_LAPACK_GESVD 1 */ 1750 #undef __FUNCT__ 1751 #define __FUNCT__ "PCBDDCConstraintsSetUp" 1752 PetscErrorCode PCBDDCConstraintsSetUp(PC pc) 1753 { 1754 PetscErrorCode ierr; 1755 PC_IS* pcis = (PC_IS*)(pc->data); 1756 PC_BDDC* pcbddc = (PC_BDDC*)pc->data; 1757 Mat_IS* matis = (Mat_IS*)pc->pmat->data; 1758 /* one and zero */ 1759 PetscScalar one=1.0,zero=0.0; 1760 /* space to store constraints and their local indices */ 1761 PetscScalar *temp_quadrature_constraint; 1762 PetscInt *temp_indices,*temp_indices_to_constraint,*temp_indices_to_constraint_B; 1763 /* iterators */ 1764 PetscInt i,j,k,total_counts,temp_start_ptr; 1765 /* BLAS integers */ 1766 PetscBLASInt lwork,lierr; 1767 PetscBLASInt Blas_N,Blas_M,Blas_K,Blas_one=1; 1768 PetscBLASInt Blas_LDA,Blas_LDB,Blas_LDC; 1769 /* reuse */ 1770 PetscInt olocal_primal_size; 1771 PetscInt *oprimal_indices_local_idxs; 1772 /* change of basis */ 1773 PetscInt *aux_primal_numbering,*aux_primal_minloc,*global_indices; 1774 PetscBool boolforchange,qr_needed; 1775 PetscBT touched,change_basis,qr_needed_idx; 1776 /* auxiliary stuff */ 1777 PetscInt *nnz,*is_indices,*aux_primal_numbering_B; 1778 PetscInt ncc,*gidxs=NULL,*permutation=NULL,*temp_indices_to_constraint_work=NULL; 1779 PetscScalar *temp_quadrature_constraint_work=NULL; 1780 /* some quantities */ 1781 PetscInt n_vertices,total_primal_vertices,valid_constraints; 1782 PetscInt size_of_constraint,max_size_of_constraint=0,max_constraints,temp_constraints; 1783 1784 PetscFunctionBegin; 1785 /* Destroy Mat objects computed previously */ 1786 ierr = MatDestroy(&pcbddc->ChangeOfBasisMatrix);CHKERRQ(ierr); 1787 ierr = MatDestroy(&pcbddc->ConstraintMatrix);CHKERRQ(ierr); 1788 1789 /* print some info */ 1790 if (pcbddc->dbg_flag) { 1791 IS vertices; 1792 PetscInt nv,nedges,nfaces; 1793 ierr = PCBDDCGraphGetCandidatesIS(pcbddc->mat_graph,&nfaces,NULL,&nedges,NULL,&vertices);CHKERRQ(ierr); 1794 ierr = ISGetSize(vertices,&nv);CHKERRQ(ierr); 1795 ierr = ISDestroy(&vertices);CHKERRQ(ierr); 1796 ierr = PetscViewerASCIISynchronizedAllow(pcbddc->dbg_viewer,PETSC_TRUE);CHKERRQ(ierr); 1797 ierr = PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"--------------------------------------------------------------\n");CHKERRQ(ierr); 1798 ierr = PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"Subdomain %04d got %02d local candidate vertices (%d)\n",PetscGlobalRank,nv,pcbddc->use_vertices);CHKERRQ(ierr); 1799 ierr = PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"Subdomain %04d got %02d local candidate edges (%d)\n",PetscGlobalRank,nedges,pcbddc->use_edges);CHKERRQ(ierr); 1800 ierr = PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"Subdomain %04d got %02d local candidate faces (%d)\n",PetscGlobalRank,nfaces,pcbddc->use_faces);CHKERRQ(ierr); 1801 ierr = PetscViewerFlush(pcbddc->dbg_viewer);CHKERRQ(ierr); 1802 } 1803 1804 if (!pcbddc->adaptive_selection) { 1805 IS ISForVertices,*ISForFaces,*ISForEdges,*used_IS; 1806 MatNullSpace nearnullsp; 1807 const Vec *nearnullvecs; 1808 Vec *localnearnullsp; 1809 PetscScalar *array; 1810 PetscInt n_ISForFaces,n_ISForEdges,nnsp_size; 1811 PetscBool nnsp_has_cnst; 1812 /* LAPACK working arrays for SVD or POD */ 1813 PetscBool skip_lapack; 1814 PetscScalar *work; 1815 PetscReal *singular_vals; 1816 #if defined(PETSC_USE_COMPLEX) 1817 PetscReal *rwork; 1818 #endif 1819 #if defined(PETSC_MISSING_LAPACK_GESVD) 1820 PetscScalar *temp_basis,*correlation_mat; 1821 #else 1822 PetscBLASInt dummy_int=1; 1823 PetscScalar dummy_scalar=1.; 1824 #endif 1825 1826 /* Get index sets for faces, edges and vertices from graph */ 1827 ierr = PCBDDCGraphGetCandidatesIS(pcbddc->mat_graph,&n_ISForFaces,&ISForFaces,&n_ISForEdges,&ISForEdges,&ISForVertices);CHKERRQ(ierr); 1828 /* free unneeded index sets */ 1829 if (!pcbddc->use_vertices) { 1830 ierr = ISDestroy(&ISForVertices);CHKERRQ(ierr); 1831 } 1832 if (!pcbddc->use_edges) { 1833 for (i=0;i<n_ISForEdges;i++) { 1834 ierr = ISDestroy(&ISForEdges[i]);CHKERRQ(ierr); 1835 } 1836 ierr = PetscFree(ISForEdges);CHKERRQ(ierr); 1837 n_ISForEdges = 0; 1838 } 1839 if (!pcbddc->use_faces) { 1840 for (i=0;i<n_ISForFaces;i++) { 1841 ierr = ISDestroy(&ISForFaces[i]);CHKERRQ(ierr); 1842 } 1843 ierr = PetscFree(ISForFaces);CHKERRQ(ierr); 1844 n_ISForFaces = 0; 1845 } 1846 /* HACKS (the following two blocks of code) */ 1847 if (!ISForVertices && pcbddc->NullSpace && !pcbddc->user_ChangeOfBasisMatrix) { 1848 pcbddc->use_change_of_basis = PETSC_TRUE; 1849 if (!ISForEdges) { 1850 pcbddc->use_change_on_faces = PETSC_TRUE; 1851 } 1852 } 1853 if (pcbddc->NullSpace) { 1854 /* use_change_of_basis should be consistent among processors */ 1855 PetscBool tbool[2],gbool[2]; 1856 tbool[0] = pcbddc->use_change_of_basis; 1857 tbool[1] = pcbddc->use_change_on_faces; 1858 ierr = MPI_Allreduce(tbool,gbool,2,MPIU_BOOL,MPI_LOR,PetscObjectComm((PetscObject)pc));CHKERRQ(ierr); 1859 pcbddc->use_change_of_basis = gbool[0]; 1860 pcbddc->use_change_on_faces = gbool[1]; 1861 } 1862 1863 /* check if near null space is attached to global mat */ 1864 ierr = MatGetNearNullSpace(pc->pmat,&nearnullsp);CHKERRQ(ierr); 1865 if (nearnullsp) { 1866 ierr = MatNullSpaceGetVecs(nearnullsp,&nnsp_has_cnst,&nnsp_size,&nearnullvecs);CHKERRQ(ierr); 1867 /* remove any stored info */ 1868 ierr = MatNullSpaceDestroy(&pcbddc->onearnullspace);CHKERRQ(ierr); 1869 ierr = PetscFree(pcbddc->onearnullvecs_state);CHKERRQ(ierr); 1870 /* store information for BDDC solver reuse */ 1871 ierr = PetscObjectReference((PetscObject)nearnullsp);CHKERRQ(ierr); 1872 pcbddc->onearnullspace = nearnullsp; 1873 ierr = PetscMalloc1(nnsp_size,&pcbddc->onearnullvecs_state);CHKERRQ(ierr); 1874 for (i=0;i<nnsp_size;i++) { 1875 ierr = PetscObjectStateGet((PetscObject)nearnullvecs[i],&pcbddc->onearnullvecs_state[i]);CHKERRQ(ierr); 1876 } 1877 } else { /* if near null space is not provided BDDC uses constants by default */ 1878 nnsp_size = 0; 1879 nnsp_has_cnst = PETSC_TRUE; 1880 } 1881 /* get max number of constraints on a single cc */ 1882 max_constraints = nnsp_size; 1883 if (nnsp_has_cnst) max_constraints++; 1884 1885 /* 1886 Evaluate maximum storage size needed by the procedure 1887 - temp_indices will contain start index of each constraint stored as follows 1888 - temp_indices_to_constraint [temp_indices[i],...,temp_indices[i+1]-1] will contain the indices (in local numbering) on which the constraint acts 1889 - temp_indices_to_constraint_B[temp_indices[i],...,temp_indices[i+1]-1] will contain the indices (in boundary numbering) on which the constraint acts 1890 - temp_quadrature_constraint [temp_indices[i],...,temp_indices[i+1]-1] will contain the scalars representing the constraint itself 1891 */ 1892 total_counts = n_ISForFaces+n_ISForEdges; 1893 total_counts *= max_constraints; 1894 n_vertices = 0; 1895 if (ISForVertices) { 1896 ierr = ISGetSize(ISForVertices,&n_vertices);CHKERRQ(ierr); 1897 } 1898 total_counts += n_vertices; 1899 ierr = PetscMalloc1(total_counts+1,&temp_indices);CHKERRQ(ierr); 1900 ierr = PetscBTCreate(total_counts,&change_basis);CHKERRQ(ierr); 1901 total_counts = 0; 1902 max_size_of_constraint = 0; 1903 for (i=0;i<n_ISForEdges+n_ISForFaces;i++) { 1904 if (i<n_ISForEdges) { 1905 used_IS = &ISForEdges[i]; 1906 } else { 1907 used_IS = &ISForFaces[i-n_ISForEdges]; 1908 } 1909 ierr = ISGetSize(*used_IS,&j);CHKERRQ(ierr); 1910 total_counts += j; 1911 max_size_of_constraint = PetscMax(j,max_size_of_constraint); 1912 } 1913 total_counts *= max_constraints; 1914 total_counts += n_vertices; 1915 ierr = PetscMalloc3(total_counts,&temp_quadrature_constraint,total_counts,&temp_indices_to_constraint,total_counts,&temp_indices_to_constraint_B);CHKERRQ(ierr); 1916 /* get local part of global near null space vectors */ 1917 ierr = PetscMalloc1(nnsp_size,&localnearnullsp);CHKERRQ(ierr); 1918 for (k=0;k<nnsp_size;k++) { 1919 ierr = VecDuplicate(pcis->vec1_N,&localnearnullsp[k]);CHKERRQ(ierr); 1920 ierr = VecScatterBegin(matis->ctx,nearnullvecs[k],localnearnullsp[k],INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1921 ierr = VecScatterEnd(matis->ctx,nearnullvecs[k],localnearnullsp[k],INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1922 } 1923 1924 /* whether or not to skip lapack calls */ 1925 skip_lapack = PETSC_TRUE; 1926 if (n_ISForFaces+n_ISForEdges && max_constraints > 1 && !pcbddc->use_nnsp_true) skip_lapack = PETSC_FALSE; 1927 1928 /* allocate some auxiliary stuff */ 1929 if (!skip_lapack || pcbddc->use_qr_single) { 1930 ierr = PetscMalloc4(max_size_of_constraint,&gidxs,max_size_of_constraint,&permutation,max_size_of_constraint,&temp_indices_to_constraint_work,max_size_of_constraint,&temp_quadrature_constraint_work);CHKERRQ(ierr); 1931 } else { 1932 gidxs = NULL; 1933 permutation = NULL; 1934 temp_indices_to_constraint_work = NULL; 1935 temp_quadrature_constraint_work = NULL; 1936 } 1937 1938 /* First we issue queries to allocate optimal workspace for LAPACKgesvd (or LAPACKsyev if SVD is missing) */ 1939 if (!skip_lapack) { 1940 PetscScalar temp_work; 1941 1942 #if defined(PETSC_MISSING_LAPACK_GESVD) 1943 /* Proper Orthogonal Decomposition (POD) using the snapshot method */ 1944 ierr = PetscMalloc1(max_constraints*max_constraints,&correlation_mat);CHKERRQ(ierr); 1945 ierr = PetscMalloc1(max_constraints,&singular_vals);CHKERRQ(ierr); 1946 ierr = PetscMalloc1(max_size_of_constraint*max_constraints,&temp_basis);CHKERRQ(ierr); 1947 #if defined(PETSC_USE_COMPLEX) 1948 ierr = PetscMalloc1(3*max_constraints,&rwork);CHKERRQ(ierr); 1949 #endif 1950 /* now we evaluate the optimal workspace using query with lwork=-1 */ 1951 ierr = PetscBLASIntCast(max_constraints,&Blas_N);CHKERRQ(ierr); 1952 ierr = PetscBLASIntCast(max_constraints,&Blas_LDA);CHKERRQ(ierr); 1953 lwork = -1; 1954 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 1955 #if !defined(PETSC_USE_COMPLEX) 1956 PetscStackCallBLAS("LAPACKsyev",LAPACKsyev_("V","U",&Blas_N,correlation_mat,&Blas_LDA,singular_vals,&temp_work,&lwork,&lierr)); 1957 #else 1958 PetscStackCallBLAS("LAPACKsyev",LAPACKsyev_("V","U",&Blas_N,correlation_mat,&Blas_LDA,singular_vals,&temp_work,&lwork,rwork,&lierr)); 1959 #endif 1960 ierr = PetscFPTrapPop();CHKERRQ(ierr); 1961 if (lierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in query to SYEV Lapack routine %d",(int)lierr); 1962 #else /* on missing GESVD */ 1963 /* SVD */ 1964 PetscInt max_n,min_n; 1965 max_n = max_size_of_constraint; 1966 min_n = max_constraints; 1967 if (max_size_of_constraint < max_constraints) { 1968 min_n = max_size_of_constraint; 1969 max_n = max_constraints; 1970 } 1971 ierr = PetscMalloc1(min_n,&singular_vals);CHKERRQ(ierr); 1972 #if defined(PETSC_USE_COMPLEX) 1973 ierr = PetscMalloc1(5*min_n,&rwork);CHKERRQ(ierr); 1974 #endif 1975 /* now we evaluate the optimal workspace using query with lwork=-1 */ 1976 lwork = -1; 1977 ierr = PetscBLASIntCast(max_n,&Blas_M);CHKERRQ(ierr); 1978 ierr = PetscBLASIntCast(min_n,&Blas_N);CHKERRQ(ierr); 1979 ierr = PetscBLASIntCast(max_n,&Blas_LDA);CHKERRQ(ierr); 1980 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 1981 #if !defined(PETSC_USE_COMPLEX) 1982 PetscStackCallBLAS("LAPACKgesvd",LAPACKgesvd_("O","N",&Blas_M,&Blas_N,&temp_quadrature_constraint[0],&Blas_LDA,singular_vals,&dummy_scalar,&dummy_int,&dummy_scalar,&dummy_int,&temp_work,&lwork,&lierr)); 1983 #else 1984 PetscStackCallBLAS("LAPACKgesvd",LAPACKgesvd_("O","N",&Blas_M,&Blas_N,&temp_quadrature_constraint[0],&Blas_LDA,singular_vals,&dummy_scalar,&dummy_int,&dummy_scalar,&dummy_int,&temp_work,&lwork,rwork,&lierr)); 1985 #endif 1986 ierr = PetscFPTrapPop();CHKERRQ(ierr); 1987 if (lierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in query to GESVD Lapack routine %d",(int)lierr); 1988 #endif /* on missing GESVD */ 1989 /* Allocate optimal workspace */ 1990 ierr = PetscBLASIntCast((PetscInt)PetscRealPart(temp_work),&lwork);CHKERRQ(ierr); 1991 ierr = PetscMalloc1(lwork,&work);CHKERRQ(ierr); 1992 } 1993 /* Now we can loop on constraining sets */ 1994 total_counts = 0; 1995 temp_indices[0] = 0; 1996 /* vertices */ 1997 if (ISForVertices) { 1998 ierr = ISGetIndices(ISForVertices,(const PetscInt**)&is_indices);CHKERRQ(ierr); 1999 if (nnsp_has_cnst) { /* consider all vertices */ 2000 ierr = PetscMemcpy(&temp_indices_to_constraint[temp_indices[total_counts]],is_indices,n_vertices*sizeof(PetscInt));CHKERRQ(ierr); 2001 for (i=0;i<n_vertices;i++) { 2002 temp_quadrature_constraint[temp_indices[total_counts]]=1.0; 2003 temp_indices[total_counts+1]=temp_indices[total_counts]+1; 2004 total_counts++; 2005 } 2006 } else { /* consider vertices for which exist at least a localnearnullsp which is not null there */ 2007 PetscBool used_vertex; 2008 for (i=0;i<n_vertices;i++) { 2009 used_vertex = PETSC_FALSE; 2010 k = 0; 2011 while (!used_vertex && k<nnsp_size) { 2012 ierr = VecGetArrayRead(localnearnullsp[k],(const PetscScalar**)&array);CHKERRQ(ierr); 2013 if (PetscAbsScalar(array[is_indices[i]])>0.0) { 2014 temp_indices_to_constraint[temp_indices[total_counts]]=is_indices[i]; 2015 temp_quadrature_constraint[temp_indices[total_counts]]=1.0; 2016 temp_indices[total_counts+1]=temp_indices[total_counts]+1; 2017 total_counts++; 2018 used_vertex = PETSC_TRUE; 2019 } 2020 ierr = VecRestoreArrayRead(localnearnullsp[k],(const PetscScalar**)&array);CHKERRQ(ierr); 2021 k++; 2022 } 2023 } 2024 } 2025 ierr = ISRestoreIndices(ISForVertices,(const PetscInt**)&is_indices);CHKERRQ(ierr); 2026 n_vertices = total_counts; 2027 } 2028 2029 /* edges and faces */ 2030 for (ncc=0;ncc<n_ISForEdges+n_ISForFaces;ncc++) { 2031 if (ncc<n_ISForEdges) { 2032 used_IS = &ISForEdges[ncc]; 2033 boolforchange = pcbddc->use_change_of_basis; /* change or not the basis on the edge */ 2034 } else { 2035 used_IS = &ISForFaces[ncc-n_ISForEdges]; 2036 boolforchange = (PetscBool)(pcbddc->use_change_of_basis && pcbddc->use_change_on_faces); /* change or not the basis on the face */ 2037 } 2038 temp_constraints = 0; /* zero the number of constraints I have on this conn comp */ 2039 temp_start_ptr = total_counts; /* need to know the starting index of constraints stored */ 2040 ierr = ISGetSize(*used_IS,&size_of_constraint);CHKERRQ(ierr); 2041 ierr = ISGetIndices(*used_IS,(const PetscInt**)&is_indices);CHKERRQ(ierr); 2042 /* change of basis should not be performed on local periodic nodes */ 2043 if (pcbddc->mat_graph->mirrors && pcbddc->mat_graph->mirrors[is_indices[0]]) boolforchange = PETSC_FALSE; 2044 if (nnsp_has_cnst) { 2045 PetscScalar quad_value; 2046 temp_constraints++; 2047 if (!pcbddc->use_nnsp_true) { 2048 quad_value = (PetscScalar)(1.0/PetscSqrtReal((PetscReal)size_of_constraint)); 2049 } else { 2050 quad_value = 1.0; 2051 } 2052 ierr = PetscMemcpy(&temp_indices_to_constraint[temp_indices[total_counts]],is_indices,size_of_constraint*sizeof(PetscInt));CHKERRQ(ierr); 2053 for (j=0;j<size_of_constraint;j++) { 2054 temp_quadrature_constraint[temp_indices[total_counts]+j]=quad_value; 2055 } 2056 /* sort by global ordering if using lapack subroutines (not needed!) */ 2057 if (!skip_lapack || pcbddc->use_qr_single) { 2058 ierr = ISLocalToGlobalMappingApply(matis->mapping,size_of_constraint,temp_indices_to_constraint+temp_indices[total_counts],gidxs);CHKERRQ(ierr); 2059 for (j=0;j<size_of_constraint;j++) { 2060 permutation[j]=j; 2061 } 2062 ierr = PetscSortIntWithPermutation(size_of_constraint,gidxs,permutation);CHKERRQ(ierr); 2063 for (j=0;j<size_of_constraint;j++) { 2064 if (permutation[j]!=j) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"This should not happen"); 2065 } 2066 for (j=0;j<size_of_constraint;j++) { 2067 temp_indices_to_constraint_work[j] = temp_indices_to_constraint[temp_indices[total_counts]+permutation[j]]; 2068 temp_quadrature_constraint_work[j] = temp_quadrature_constraint[temp_indices[total_counts]+permutation[j]]; 2069 } 2070 ierr = PetscMemcpy(temp_indices_to_constraint+temp_indices[total_counts],temp_indices_to_constraint_work,size_of_constraint*sizeof(PetscInt));CHKERRQ(ierr); 2071 ierr = PetscMemcpy(temp_quadrature_constraint+temp_indices[total_counts],temp_quadrature_constraint_work,size_of_constraint*sizeof(PetscScalar));CHKERRQ(ierr); 2072 } 2073 temp_indices[total_counts+1]=temp_indices[total_counts]+size_of_constraint; /* store new starting point */ 2074 total_counts++; 2075 } 2076 for (k=0;k<nnsp_size;k++) { 2077 PetscReal real_value; 2078 ierr = VecGetArrayRead(localnearnullsp[k],(const PetscScalar**)&array);CHKERRQ(ierr); 2079 ierr = PetscMemcpy(&temp_indices_to_constraint[temp_indices[total_counts]],is_indices,size_of_constraint*sizeof(PetscInt));CHKERRQ(ierr); 2080 for (j=0;j<size_of_constraint;j++) { 2081 temp_quadrature_constraint[temp_indices[total_counts]+j]=array[is_indices[j]]; 2082 } 2083 ierr = VecRestoreArrayRead(localnearnullsp[k],(const PetscScalar**)&array);CHKERRQ(ierr); 2084 /* check if array is null on the connected component */ 2085 ierr = PetscBLASIntCast(size_of_constraint,&Blas_N);CHKERRQ(ierr); 2086 PetscStackCallBLAS("BLASasum",real_value = BLASasum_(&Blas_N,&temp_quadrature_constraint[temp_indices[total_counts]],&Blas_one)); 2087 if (real_value > 0.0) { /* keep indices and values */ 2088 /* sort by global ordering if using lapack subroutines */ 2089 if (!skip_lapack || pcbddc->use_qr_single) { 2090 ierr = ISLocalToGlobalMappingApply(matis->mapping,size_of_constraint,temp_indices_to_constraint+temp_indices[total_counts],gidxs);CHKERRQ(ierr); 2091 for (j=0;j<size_of_constraint;j++) { 2092 permutation[j]=j; 2093 } 2094 ierr = PetscSortIntWithPermutation(size_of_constraint,gidxs,permutation);CHKERRQ(ierr); 2095 for (j=0;j<size_of_constraint;j++) { 2096 temp_indices_to_constraint_work[j] = temp_indices_to_constraint[temp_indices[total_counts]+permutation[j]]; 2097 temp_quadrature_constraint_work[j] = temp_quadrature_constraint[temp_indices[total_counts]+permutation[j]]; 2098 } 2099 ierr = PetscMemcpy(temp_indices_to_constraint+temp_indices[total_counts],temp_indices_to_constraint_work,size_of_constraint*sizeof(PetscInt));CHKERRQ(ierr); 2100 ierr = PetscMemcpy(temp_quadrature_constraint+temp_indices[total_counts],temp_quadrature_constraint_work,size_of_constraint*sizeof(PetscScalar));CHKERRQ(ierr); 2101 } 2102 temp_constraints++; 2103 temp_indices[total_counts+1]=temp_indices[total_counts]+size_of_constraint; /* store new starting point */ 2104 total_counts++; 2105 } 2106 } 2107 ierr = ISRestoreIndices(*used_IS,(const PetscInt**)&is_indices);CHKERRQ(ierr); 2108 valid_constraints = temp_constraints; 2109 if (!pcbddc->use_nnsp_true && temp_constraints) { 2110 if (temp_constraints == 1) { /* just normalize the constraint */ 2111 PetscScalar norm; 2112 ierr = PetscBLASIntCast(size_of_constraint,&Blas_N);CHKERRQ(ierr); 2113 PetscStackCallBLAS("BLASdot",norm = BLASdot_(&Blas_N,temp_quadrature_constraint+temp_indices[temp_start_ptr],&Blas_one,temp_quadrature_constraint+temp_indices[temp_start_ptr],&Blas_one)); 2114 norm = 1.0/PetscSqrtReal(PetscRealPart(norm)); 2115 PetscStackCallBLAS("BLASscal",BLASscal_(&Blas_N,&norm,temp_quadrature_constraint+temp_indices[temp_start_ptr],&Blas_one)); 2116 } else { /* perform SVD */ 2117 PetscReal tol = 1.0e-8; /* tolerance for retaining eigenmodes */ 2118 2119 #if defined(PETSC_MISSING_LAPACK_GESVD) 2120 /* SVD: Y = U*S*V^H -> U (eigenvectors of Y*Y^H) = Y*V*(S)^\dag 2121 POD: Y^H*Y = V*D*V^H, D = S^H*S -> U = Y*V*D^(-1/2) 2122 -> When PETSC_USE_COMPLEX and PETSC_MISSING_LAPACK_GESVD are defined 2123 the constraints basis will differ (by a complex factor with absolute value equal to 1) 2124 from that computed using LAPACKgesvd 2125 -> This is due to a different computation of eigenvectors in LAPACKheev 2126 -> The quality of the POD-computed basis will be the same */ 2127 ierr = PetscMemzero(correlation_mat,temp_constraints*temp_constraints*sizeof(PetscScalar));CHKERRQ(ierr); 2128 /* Store upper triangular part of correlation matrix */ 2129 ierr = PetscBLASIntCast(size_of_constraint,&Blas_N);CHKERRQ(ierr); 2130 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 2131 for (j=0;j<temp_constraints;j++) { 2132 for (k=0;k<j+1;k++) { 2133 PetscStackCallBLAS("BLASdot",correlation_mat[j*temp_constraints+k]=BLASdot_(&Blas_N,&temp_quadrature_constraint[temp_indices[temp_start_ptr+k]],&Blas_one,&temp_quadrature_constraint[temp_indices[temp_start_ptr+j]],&Blas_one)); 2134 } 2135 } 2136 /* compute eigenvalues and eigenvectors of correlation matrix */ 2137 ierr = PetscBLASIntCast(temp_constraints,&Blas_N);CHKERRQ(ierr); 2138 ierr = PetscBLASIntCast(temp_constraints,&Blas_LDA);CHKERRQ(ierr); 2139 #if !defined(PETSC_USE_COMPLEX) 2140 PetscStackCallBLAS("LAPACKsyev",LAPACKsyev_("V","U",&Blas_N,correlation_mat,&Blas_LDA,singular_vals,work,&lwork,&lierr)); 2141 #else 2142 PetscStackCallBLAS("LAPACKsyev",LAPACKsyev_("V","U",&Blas_N,correlation_mat,&Blas_LDA,singular_vals,work,&lwork,rwork,&lierr)); 2143 #endif 2144 ierr = PetscFPTrapPop();CHKERRQ(ierr); 2145 if (lierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in SYEV Lapack routine %d",(int)lierr); 2146 /* retain eigenvalues greater than tol: note that LAPACKsyev gives eigs in ascending order */ 2147 j = 0; 2148 while (j < temp_constraints && singular_vals[j] < tol) j++; 2149 total_counts = total_counts-j; 2150 valid_constraints = temp_constraints-j; 2151 /* scale and copy POD basis into used quadrature memory */ 2152 ierr = PetscBLASIntCast(size_of_constraint,&Blas_M);CHKERRQ(ierr); 2153 ierr = PetscBLASIntCast(temp_constraints,&Blas_N);CHKERRQ(ierr); 2154 ierr = PetscBLASIntCast(temp_constraints,&Blas_K);CHKERRQ(ierr); 2155 ierr = PetscBLASIntCast(size_of_constraint,&Blas_LDA);CHKERRQ(ierr); 2156 ierr = PetscBLASIntCast(temp_constraints,&Blas_LDB);CHKERRQ(ierr); 2157 ierr = PetscBLASIntCast(size_of_constraint,&Blas_LDC);CHKERRQ(ierr); 2158 if (j<temp_constraints) { 2159 PetscInt ii; 2160 for (k=j;k<temp_constraints;k++) singular_vals[k]=1.0/PetscSqrtReal(singular_vals[k]); 2161 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 2162 PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&Blas_M,&Blas_N,&Blas_K,&one,&temp_quadrature_constraint[temp_indices[temp_start_ptr]],&Blas_LDA,correlation_mat,&Blas_LDB,&zero,temp_basis,&Blas_LDC)); 2163 ierr = PetscFPTrapPop();CHKERRQ(ierr); 2164 for (k=0;k<temp_constraints-j;k++) { 2165 for (ii=0;ii<size_of_constraint;ii++) { 2166 temp_quadrature_constraint[temp_indices[temp_start_ptr+k]+ii]=singular_vals[temp_constraints-1-k]*temp_basis[(temp_constraints-1-k)*size_of_constraint+ii]; 2167 } 2168 } 2169 } 2170 #else /* on missing GESVD */ 2171 ierr = PetscBLASIntCast(size_of_constraint,&Blas_M);CHKERRQ(ierr); 2172 ierr = PetscBLASIntCast(temp_constraints,&Blas_N);CHKERRQ(ierr); 2173 ierr = PetscBLASIntCast(size_of_constraint,&Blas_LDA);CHKERRQ(ierr); 2174 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 2175 #if !defined(PETSC_USE_COMPLEX) 2176 PetscStackCallBLAS("LAPACKgesvd",LAPACKgesvd_("O","N",&Blas_M,&Blas_N,&temp_quadrature_constraint[temp_indices[temp_start_ptr]],&Blas_LDA,singular_vals,&dummy_scalar,&dummy_int,&dummy_scalar,&dummy_int,work,&lwork,&lierr)); 2177 #else 2178 PetscStackCallBLAS("LAPACKgesvd",LAPACKgesvd_("O","N",&Blas_M,&Blas_N,&temp_quadrature_constraint[temp_indices[temp_start_ptr]],&Blas_LDA,singular_vals,&dummy_scalar,&dummy_int,&dummy_scalar,&dummy_int,work,&lwork,rwork,&lierr)); 2179 #endif 2180 if (lierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in GESVD Lapack routine %d",(int)lierr); 2181 ierr = PetscFPTrapPop();CHKERRQ(ierr); 2182 /* retain eigenvalues greater than tol: note that LAPACKgesvd gives eigs in descending order */ 2183 k = temp_constraints; 2184 if (k > size_of_constraint) k = size_of_constraint; 2185 j = 0; 2186 while (j < k && singular_vals[k-j-1] < tol) j++; 2187 valid_constraints = k-j; 2188 total_counts = total_counts-temp_constraints+valid_constraints; 2189 #endif /* on missing GESVD */ 2190 } 2191 } 2192 /* setting change_of_basis flag is safe now */ 2193 if (boolforchange) { 2194 for (j=0;j<valid_constraints;j++) { 2195 PetscBTSet(change_basis,total_counts-j-1); 2196 } 2197 } 2198 } 2199 /* free workspace */ 2200 if (!skip_lapack || pcbddc->use_qr_single) { 2201 ierr = PetscFree4(gidxs,permutation,temp_indices_to_constraint_work,temp_quadrature_constraint_work);CHKERRQ(ierr); 2202 } 2203 if (!skip_lapack) { 2204 ierr = PetscFree(work);CHKERRQ(ierr); 2205 #if defined(PETSC_USE_COMPLEX) 2206 ierr = PetscFree(rwork);CHKERRQ(ierr); 2207 #endif 2208 ierr = PetscFree(singular_vals);CHKERRQ(ierr); 2209 #if defined(PETSC_MISSING_LAPACK_GESVD) 2210 ierr = PetscFree(correlation_mat);CHKERRQ(ierr); 2211 ierr = PetscFree(temp_basis);CHKERRQ(ierr); 2212 #endif 2213 } 2214 for (k=0;k<nnsp_size;k++) { 2215 ierr = VecDestroy(&localnearnullsp[k]);CHKERRQ(ierr); 2216 } 2217 ierr = PetscFree(localnearnullsp);CHKERRQ(ierr); 2218 /* free index sets of faces, edges and vertices */ 2219 for (i=0;i<n_ISForFaces;i++) { 2220 ierr = ISDestroy(&ISForFaces[i]);CHKERRQ(ierr); 2221 } 2222 if (n_ISForFaces) { 2223 ierr = PetscFree(ISForFaces);CHKERRQ(ierr); 2224 } 2225 for (i=0;i<n_ISForEdges;i++) { 2226 ierr = ISDestroy(&ISForEdges[i]);CHKERRQ(ierr); 2227 } 2228 if (n_ISForEdges) { 2229 ierr = PetscFree(ISForEdges);CHKERRQ(ierr); 2230 } 2231 ierr = ISDestroy(&ISForVertices);CHKERRQ(ierr); 2232 } else { 2233 PCBDDCSubSchurs sub_schurs = pcbddc->sub_schurs; 2234 PetscInt cum = 0; 2235 2236 total_counts = 0; 2237 n_vertices = 0; 2238 if (sub_schurs->is_Ej_com && pcbddc->use_vertices) { 2239 ierr = ISGetLocalSize(sub_schurs->is_Ej_com,&n_vertices);CHKERRQ(ierr); 2240 } 2241 max_constraints = 0; 2242 for (i=0;i<sub_schurs->n_subs+n_vertices;i++) { 2243 total_counts += pcbddc->adaptive_constraints_n[i]; 2244 max_constraints = PetscMax(max_constraints,pcbddc->adaptive_constraints_n[i]); 2245 } 2246 temp_indices = pcbddc->adaptive_constraints_ptrs; 2247 temp_indices_to_constraint = pcbddc->adaptive_constraints_idxs; 2248 temp_quadrature_constraint = pcbddc->adaptive_constraints_data; 2249 2250 #if 0 2251 printf("Found %d totals\n",total_counts); 2252 for (i=0;i<total_counts;i++) { 2253 printf("const %d, start %d",i,temp_indices[i]); 2254 printf(" end %d:\n",temp_indices[i+1]); 2255 for (j=temp_indices[i];j<temp_indices[i+1];j++) { 2256 printf(" idxs %d",temp_indices_to_constraint[j]); 2257 printf(" data %1.2e\n",temp_quadrature_constraint[j]); 2258 } 2259 } 2260 for (i=0;i<n_vertices;i++) { 2261 PetscPrintf(PETSC_COMM_SELF,"[%d] vertex %d, n %d\n",PetscGlobalRank,i,pcbddc->adaptive_constraints_n[i]); 2262 } 2263 for (i=0;i<sub_schurs->n_subs;i++) { 2264 PetscPrintf(PETSC_COMM_SELF,"[%d] sub %d, edge %d, n %d\n",PetscGlobalRank,i,(PetscBool)PetscBTLookup(sub_schurs->is_edge,i),pcbddc->adaptive_constraints_n[i+n_vertices]); 2265 } 2266 #endif 2267 2268 max_size_of_constraint = 0; 2269 for (i=0;i<total_counts;i++) max_size_of_constraint = PetscMax(max_size_of_constraint,temp_indices[i+1]-temp_indices[i]); 2270 ierr = PetscMalloc1(temp_indices[total_counts],&temp_indices_to_constraint_B);CHKERRQ(ierr); 2271 /* Change of basis */ 2272 ierr = PetscBTCreate(total_counts,&change_basis);CHKERRQ(ierr); 2273 if (pcbddc->use_change_of_basis) { 2274 cum = n_vertices; 2275 for (i=0;i<sub_schurs->n_subs;i++) { 2276 if (PetscBTLookup(sub_schurs->is_edge,i) || pcbddc->use_change_on_faces) { 2277 for (j=0;j<pcbddc->adaptive_constraints_n[i+n_vertices];j++) { 2278 ierr = PetscBTSet(change_basis,cum+j);CHKERRQ(ierr); 2279 } 2280 } 2281 cum += pcbddc->adaptive_constraints_n[i+n_vertices]; 2282 } 2283 } 2284 } 2285 2286 /* map temp_indices_to_constraint in boundary numbering */ 2287 ierr = ISGlobalToLocalMappingApply(pcis->BtoNmap,IS_GTOLM_DROP,temp_indices[total_counts],temp_indices_to_constraint,&i,temp_indices_to_constraint_B);CHKERRQ(ierr); 2288 if (i != temp_indices[total_counts]) { 2289 SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Error in boundary numbering for constraints indices %d != %d\n",temp_indices[total_counts],i); 2290 } 2291 2292 /* set quantities in pcbddc data structure and store previous primal size */ 2293 /* n_vertices defines the number of subdomain corners in the primal space */ 2294 /* n_constraints defines the number of averages (they can be point primal dofs if change of basis is requested) */ 2295 olocal_primal_size = pcbddc->local_primal_size; 2296 pcbddc->local_primal_size = total_counts; 2297 pcbddc->n_vertices = n_vertices; 2298 pcbddc->n_constraints = pcbddc->local_primal_size-pcbddc->n_vertices; 2299 2300 /* Create constraint matrix */ 2301 /* The constraint matrix is used to compute the l2g map of primal dofs */ 2302 /* so we need to set it up properly either with or without change of basis */ 2303 ierr = MatCreate(PETSC_COMM_SELF,&pcbddc->ConstraintMatrix);CHKERRQ(ierr); 2304 ierr = MatSetType(pcbddc->ConstraintMatrix,MATAIJ);CHKERRQ(ierr); 2305 ierr = MatSetSizes(pcbddc->ConstraintMatrix,pcbddc->local_primal_size,pcis->n,pcbddc->local_primal_size,pcis->n);CHKERRQ(ierr); 2306 /* array to compute a local numbering of constraints : vertices first then constraints */ 2307 ierr = PetscMalloc1(pcbddc->local_primal_size,&aux_primal_numbering);CHKERRQ(ierr); 2308 /* array to select the proper local node (of minimum index with respect to global ordering) when changing the basis */ 2309 /* note: it should not be needed since IS for faces and edges are already sorted by global ordering when analyzing the graph but... just in case */ 2310 ierr = PetscMalloc1(pcbddc->local_primal_size,&aux_primal_minloc);CHKERRQ(ierr); 2311 /* auxiliary stuff for basis change */ 2312 ierr = PetscMalloc1(max_size_of_constraint,&global_indices);CHKERRQ(ierr); 2313 ierr = PetscBTCreate(pcis->n_B,&touched);CHKERRQ(ierr); 2314 2315 /* find primal_dofs: subdomain corners plus dofs selected as primal after change of basis */ 2316 total_primal_vertices=0; 2317 for (i=0;i<pcbddc->local_primal_size;i++) { 2318 size_of_constraint=temp_indices[i+1]-temp_indices[i]; 2319 if (size_of_constraint == 1) { 2320 ierr = PetscBTSet(touched,temp_indices_to_constraint_B[temp_indices[i]]);CHKERRQ(ierr); 2321 aux_primal_numbering[total_primal_vertices]=temp_indices_to_constraint[temp_indices[i]]; 2322 aux_primal_minloc[total_primal_vertices]=0; 2323 total_primal_vertices++; 2324 } else if (PetscBTLookup(change_basis,i)) { /* Same procedure used in PCBDDCGetPrimalConstraintsLocalIdx */ 2325 PetscInt min_loc,min_index; 2326 ierr = ISLocalToGlobalMappingApply(pcbddc->mat_graph->l2gmap,size_of_constraint,&temp_indices_to_constraint[temp_indices[i]],global_indices);CHKERRQ(ierr); 2327 /* find first untouched local node */ 2328 k = 0; 2329 while (PetscBTLookup(touched,temp_indices_to_constraint_B[temp_indices[i]+k])) k++; 2330 min_index = global_indices[k]; 2331 min_loc = k; 2332 /* search the minimum among global nodes already untouched on the cc */ 2333 for (k=1;k<size_of_constraint;k++) { 2334 /* there can be more than one constraint on a single connected component */ 2335 if (!PetscBTLookup(touched,temp_indices_to_constraint_B[temp_indices[i]+k]) && min_index > global_indices[k]) { 2336 min_index = global_indices[k]; 2337 min_loc = k; 2338 } 2339 } 2340 ierr = PetscBTSet(touched,temp_indices_to_constraint_B[temp_indices[i]+min_loc]);CHKERRQ(ierr); 2341 aux_primal_numbering[total_primal_vertices]=temp_indices_to_constraint[temp_indices[i]+min_loc]; 2342 aux_primal_minloc[total_primal_vertices]=min_loc; 2343 total_primal_vertices++; 2344 } 2345 } 2346 /* determine if a QR strategy is needed for change of basis */ 2347 qr_needed = PETSC_FALSE; 2348 ierr = PetscBTCreate(pcbddc->local_primal_size,&qr_needed_idx);CHKERRQ(ierr); 2349 for (i=pcbddc->n_vertices;i<pcbddc->local_primal_size;i++) { 2350 if (PetscBTLookup(change_basis,i)) { 2351 if (!pcbddc->use_qr_single && !pcbddc->faster_deluxe) { 2352 size_of_constraint = temp_indices[i+1]-temp_indices[i]; 2353 j = 0; 2354 for (k=0;k<size_of_constraint;k++) { 2355 if (PetscBTLookup(touched,temp_indices_to_constraint_B[temp_indices[i]+k])) { 2356 j++; 2357 } 2358 } 2359 /* found more than one primal dof on the cc */ 2360 if (j > 1) { 2361 PetscBTSet(qr_needed_idx,i); 2362 qr_needed = PETSC_TRUE; 2363 } 2364 } else { 2365 PetscBTSet(qr_needed_idx,i); 2366 qr_needed = PETSC_TRUE; 2367 } 2368 } 2369 } 2370 /* free workspace */ 2371 ierr = PetscFree(global_indices);CHKERRQ(ierr); 2372 2373 /* permute indices in order to have a sorted set of vertices */ 2374 ierr = PetscSortInt(total_primal_vertices,aux_primal_numbering);CHKERRQ(ierr); 2375 2376 /* nonzero structure of constraint matrix */ 2377 ierr = PetscMalloc1(pcbddc->local_primal_size,&nnz);CHKERRQ(ierr); 2378 for (i=0;i<total_primal_vertices;i++) nnz[i]=1; 2379 j=total_primal_vertices; 2380 for (i=pcbddc->n_vertices;i<pcbddc->local_primal_size;i++) { 2381 if (!PetscBTLookup(change_basis,i)) { 2382 nnz[j]=temp_indices[i+1]-temp_indices[i]; 2383 j++; 2384 } 2385 } 2386 ierr = MatSeqAIJSetPreallocation(pcbddc->ConstraintMatrix,0,nnz);CHKERRQ(ierr); 2387 ierr = PetscFree(nnz);CHKERRQ(ierr); 2388 /* set values in constraint matrix */ 2389 for (i=0;i<total_primal_vertices;i++) { 2390 ierr = MatSetValue(pcbddc->ConstraintMatrix,i,aux_primal_numbering[i],1.0,INSERT_VALUES);CHKERRQ(ierr); 2391 } 2392 total_counts = total_primal_vertices; 2393 for (i=pcbddc->n_vertices;i<pcbddc->local_primal_size;i++) { 2394 if (!PetscBTLookup(change_basis,i)) { 2395 size_of_constraint=temp_indices[i+1]-temp_indices[i]; 2396 ierr = MatSetValues(pcbddc->ConstraintMatrix,1,&total_counts,size_of_constraint,&temp_indices_to_constraint[temp_indices[i]],&temp_quadrature_constraint[temp_indices[i]],INSERT_VALUES);CHKERRQ(ierr); 2397 total_counts++; 2398 } 2399 } 2400 /* assembling */ 2401 ierr = MatAssemblyBegin(pcbddc->ConstraintMatrix,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2402 ierr = MatAssemblyEnd(pcbddc->ConstraintMatrix,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2403 /* 2404 ierr = PetscViewerSetFormat(PETSC_VIEWER_STDOUT_SELF,PETSC_VIEWER_ASCII_MATLAB);CHKERRQ(ierr); 2405 ierr = MatView(pcbddc->ConstraintMatrix,(PetscViewer)0);CHKERRQ(ierr); 2406 */ 2407 /* Create matrix for change of basis. We don't need it in case pcbddc->use_change_of_basis is FALSE */ 2408 if (pcbddc->use_change_of_basis) { 2409 /* dual and primal dofs on a single cc */ 2410 PetscInt dual_dofs,primal_dofs; 2411 /* iterator on aux_primal_minloc (ordered as read from nearnullspace: vertices, edges and then constraints) */ 2412 PetscInt primal_counter; 2413 /* working stuff for GEQRF */ 2414 PetscScalar *qr_basis,*qr_tau = NULL,*qr_work,lqr_work_t; 2415 PetscBLASInt lqr_work; 2416 /* working stuff for UNGQR */ 2417 PetscScalar *gqr_work,lgqr_work_t; 2418 PetscBLASInt lgqr_work; 2419 /* working stuff for TRTRS */ 2420 PetscScalar *trs_rhs; 2421 PetscBLASInt Blas_NRHS; 2422 /* pointers for values insertion into change of basis matrix */ 2423 PetscInt *start_rows,*start_cols; 2424 PetscScalar *start_vals; 2425 /* working stuff for values insertion */ 2426 PetscBT is_primal; 2427 /* matrix sizes */ 2428 PetscInt global_size,local_size; 2429 /* temporary change of basis */ 2430 Mat localChangeOfBasisMatrix; 2431 /* extra space for debugging */ 2432 PetscScalar *dbg_work; 2433 2434 /* local temporary change of basis acts on local interfaces -> dimension is n_B x n_B */ 2435 ierr = MatCreate(PETSC_COMM_SELF,&localChangeOfBasisMatrix);CHKERRQ(ierr); 2436 ierr = MatSetType(localChangeOfBasisMatrix,MATAIJ);CHKERRQ(ierr); 2437 ierr = MatSetSizes(localChangeOfBasisMatrix,pcis->n,pcis->n,pcis->n,pcis->n);CHKERRQ(ierr); 2438 /* nonzeros for local mat */ 2439 ierr = PetscMalloc1(pcis->n,&nnz);CHKERRQ(ierr); 2440 for (i=0;i<pcis->n;i++) nnz[i]=1; 2441 for (i=pcbddc->n_vertices;i<pcbddc->local_primal_size;i++) { 2442 if (PetscBTLookup(change_basis,i)) { 2443 size_of_constraint = temp_indices[i+1]-temp_indices[i]; 2444 if (PetscBTLookup(qr_needed_idx,i)) { 2445 for (j=0;j<size_of_constraint;j++) nnz[temp_indices_to_constraint[temp_indices[i]+j]] = size_of_constraint; 2446 } else { 2447 for (j=0;j<size_of_constraint;j++) nnz[temp_indices_to_constraint[temp_indices[i]+j]] = 2; 2448 /* get local primal index on the cc */ 2449 j = 0; 2450 while (!PetscBTLookup(touched,temp_indices_to_constraint_B[temp_indices[i]+j])) j++; 2451 nnz[temp_indices_to_constraint[temp_indices[i]+j]] = size_of_constraint; 2452 } 2453 } 2454 } 2455 ierr = MatSeqAIJSetPreallocation(localChangeOfBasisMatrix,0,nnz);CHKERRQ(ierr); 2456 ierr = PetscFree(nnz);CHKERRQ(ierr); 2457 /* Set initial identity in the matrix */ 2458 for (i=0;i<pcis->n;i++) { 2459 ierr = MatSetValue(localChangeOfBasisMatrix,i,i,1.0,INSERT_VALUES);CHKERRQ(ierr); 2460 } 2461 2462 if (pcbddc->dbg_flag) { 2463 ierr = PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"--------------------------------------------------------------\n");CHKERRQ(ierr); 2464 ierr = PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"Checking change of basis computation for subdomain %04d\n",PetscGlobalRank);CHKERRQ(ierr); 2465 } 2466 2467 2468 /* Now we loop on the constraints which need a change of basis */ 2469 /* 2470 Change of basis matrix is evaluated similarly to the FIRST APPROACH in 2471 Klawonn and Widlund, Dual-primal FETI-DP methods for linear elasticity, (see Sect 6.2.1) 2472 2473 Basic blocks of change of basis matrix T computed by 2474 2475 - Using the following block transformation if there is only a primal dof on the cc (and -pc_bddc_use_qr_single is not specified) 2476 2477 | 1 0 ... 0 s_1/S | 2478 | 0 1 ... 0 s_2/S | 2479 | ... | 2480 | 0 ... 1 s_{n-1}/S | 2481 | -s_1/s_n ... -s_{n-1}/s_n s_n/S | 2482 2483 with S = \sum_{i=1}^n s_i^2 2484 NOTE: in the above example, the primal dof is the last one of the edge in LOCAL ordering 2485 in the current implementation, the primal dof is the first one of the edge in GLOBAL ordering 2486 2487 - QR decomposition of constraints otherwise 2488 */ 2489 if (qr_needed) { 2490 /* space to store Q */ 2491 ierr = PetscMalloc1(max_size_of_constraint*max_size_of_constraint,&qr_basis);CHKERRQ(ierr); 2492 /* first we issue queries for optimal work */ 2493 ierr = PetscBLASIntCast(max_size_of_constraint,&Blas_M);CHKERRQ(ierr); 2494 ierr = PetscBLASIntCast(max_constraints,&Blas_N);CHKERRQ(ierr); 2495 ierr = PetscBLASIntCast(max_size_of_constraint,&Blas_LDA);CHKERRQ(ierr); 2496 lqr_work = -1; 2497 PetscStackCallBLAS("LAPACKgeqrf",LAPACKgeqrf_(&Blas_M,&Blas_N,qr_basis,&Blas_LDA,qr_tau,&lqr_work_t,&lqr_work,&lierr)); 2498 if (lierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in query to GEQRF Lapack routine %d",(int)lierr); 2499 ierr = PetscBLASIntCast((PetscInt)PetscRealPart(lqr_work_t),&lqr_work);CHKERRQ(ierr); 2500 ierr = PetscMalloc1((PetscInt)PetscRealPart(lqr_work_t),&qr_work);CHKERRQ(ierr); 2501 lgqr_work = -1; 2502 ierr = PetscBLASIntCast(max_size_of_constraint,&Blas_M);CHKERRQ(ierr); 2503 ierr = PetscBLASIntCast(max_size_of_constraint,&Blas_N);CHKERRQ(ierr); 2504 ierr = PetscBLASIntCast(max_constraints,&Blas_K);CHKERRQ(ierr); 2505 ierr = PetscBLASIntCast(max_size_of_constraint,&Blas_LDA);CHKERRQ(ierr); 2506 if (Blas_K>Blas_M) Blas_K=Blas_M; /* adjust just for computing optimal work */ 2507 PetscStackCallBLAS("LAPACKungqr",LAPACKungqr_(&Blas_M,&Blas_N,&Blas_K,qr_basis,&Blas_LDA,qr_tau,&lgqr_work_t,&lgqr_work,&lierr)); 2508 if (lierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in query to UNGQR Lapack routine %d",(int)lierr); 2509 ierr = PetscBLASIntCast((PetscInt)PetscRealPart(lgqr_work_t),&lgqr_work);CHKERRQ(ierr); 2510 ierr = PetscMalloc1((PetscInt)PetscRealPart(lgqr_work_t),&gqr_work);CHKERRQ(ierr); 2511 /* array to store scaling factors for reflectors */ 2512 ierr = PetscMalloc1(max_constraints,&qr_tau);CHKERRQ(ierr); 2513 /* array to store rhs and solution of triangular solver */ 2514 ierr = PetscMalloc1(max_constraints*max_constraints,&trs_rhs);CHKERRQ(ierr); 2515 /* allocating workspace for check */ 2516 if (pcbddc->dbg_flag) { 2517 ierr = PetscMalloc1(max_size_of_constraint*(max_constraints+max_size_of_constraint),&dbg_work);CHKERRQ(ierr); 2518 } 2519 } 2520 /* array to store whether a node is primal or not */ 2521 ierr = PetscBTCreate(pcis->n_B,&is_primal);CHKERRQ(ierr); 2522 ierr = PetscMalloc1(total_primal_vertices,&aux_primal_numbering_B);CHKERRQ(ierr); 2523 ierr = ISGlobalToLocalMappingApply(pcis->BtoNmap,IS_GTOLM_DROP,total_primal_vertices,aux_primal_numbering,&i,aux_primal_numbering_B);CHKERRQ(ierr); 2524 if (i != total_primal_vertices) { 2525 SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Error in boundary numbering for BDDC vertices! %d != %d\n",total_primal_vertices,i); 2526 } 2527 for (i=0;i<total_primal_vertices;i++) { 2528 ierr = PetscBTSet(is_primal,aux_primal_numbering_B[i]);CHKERRQ(ierr); 2529 } 2530 ierr = PetscFree(aux_primal_numbering_B);CHKERRQ(ierr); 2531 2532 /* loop on constraints and see whether or not they need a change of basis and compute it */ 2533 /* -> using implicit ordering contained in temp_indices data */ 2534 total_counts = pcbddc->n_vertices; 2535 primal_counter = total_counts; 2536 while (total_counts<pcbddc->local_primal_size) { 2537 primal_dofs = 1; 2538 if (PetscBTLookup(change_basis,total_counts)) { 2539 /* get all constraints with same support: if more then one constraint is present on the cc then surely indices are stored contiguosly */ 2540 while (total_counts+primal_dofs < pcbddc->local_primal_size && temp_indices_to_constraint[temp_indices[total_counts]] == temp_indices_to_constraint[temp_indices[total_counts+primal_dofs]]) { 2541 primal_dofs++; 2542 } 2543 /* get constraint info */ 2544 size_of_constraint = temp_indices[total_counts+1]-temp_indices[total_counts]; 2545 dual_dofs = size_of_constraint-primal_dofs; 2546 2547 if (pcbddc->dbg_flag) { 2548 ierr = PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"Constraints %d to %d (incl) need a change of basis (size %d)\n",total_counts,total_counts+primal_dofs-1,size_of_constraint);CHKERRQ(ierr); 2549 } 2550 2551 if (PetscBTLookup(qr_needed_idx,total_counts)) { /* QR */ 2552 2553 /* copy quadrature constraints for change of basis check */ 2554 if (pcbddc->dbg_flag) { 2555 ierr = PetscMemcpy(dbg_work,&temp_quadrature_constraint[temp_indices[total_counts]],size_of_constraint*primal_dofs*sizeof(PetscScalar));CHKERRQ(ierr); 2556 } 2557 /* copy temporary constraints into larger work vector (in order to store all columns of Q) */ 2558 ierr = PetscMemcpy(qr_basis,&temp_quadrature_constraint[temp_indices[total_counts]],size_of_constraint*primal_dofs*sizeof(PetscScalar));CHKERRQ(ierr); 2559 2560 /* compute QR decomposition of constraints */ 2561 ierr = PetscBLASIntCast(size_of_constraint,&Blas_M);CHKERRQ(ierr); 2562 ierr = PetscBLASIntCast(primal_dofs,&Blas_N);CHKERRQ(ierr); 2563 ierr = PetscBLASIntCast(size_of_constraint,&Blas_LDA);CHKERRQ(ierr); 2564 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 2565 PetscStackCallBLAS("LAPACKgeqrf",LAPACKgeqrf_(&Blas_M,&Blas_N,qr_basis,&Blas_LDA,qr_tau,qr_work,&lqr_work,&lierr)); 2566 if (lierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in GEQRF Lapack routine %d",(int)lierr); 2567 ierr = PetscFPTrapPop();CHKERRQ(ierr); 2568 2569 /* explictly compute R^-T */ 2570 ierr = PetscMemzero(trs_rhs,primal_dofs*primal_dofs*sizeof(*trs_rhs));CHKERRQ(ierr); 2571 for (j=0;j<primal_dofs;j++) trs_rhs[j*(primal_dofs+1)] = 1.0; 2572 ierr = PetscBLASIntCast(primal_dofs,&Blas_N);CHKERRQ(ierr); 2573 ierr = PetscBLASIntCast(primal_dofs,&Blas_NRHS);CHKERRQ(ierr); 2574 ierr = PetscBLASIntCast(size_of_constraint,&Blas_LDA);CHKERRQ(ierr); 2575 ierr = PetscBLASIntCast(primal_dofs,&Blas_LDB);CHKERRQ(ierr); 2576 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 2577 PetscStackCallBLAS("LAPACKtrtrs",LAPACKtrtrs_("U","T","N",&Blas_N,&Blas_NRHS,qr_basis,&Blas_LDA,trs_rhs,&Blas_LDB,&lierr)); 2578 if (lierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in TRTRS Lapack routine %d",(int)lierr); 2579 ierr = PetscFPTrapPop();CHKERRQ(ierr); 2580 2581 /* explicitly compute all columns of Q (Q = [Q1 | Q2] ) overwriting QR factorization in qr_basis */ 2582 ierr = PetscBLASIntCast(size_of_constraint,&Blas_M);CHKERRQ(ierr); 2583 ierr = PetscBLASIntCast(size_of_constraint,&Blas_N);CHKERRQ(ierr); 2584 ierr = PetscBLASIntCast(primal_dofs,&Blas_K);CHKERRQ(ierr); 2585 ierr = PetscBLASIntCast(size_of_constraint,&Blas_LDA);CHKERRQ(ierr); 2586 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 2587 PetscStackCallBLAS("LAPACKungqr",LAPACKungqr_(&Blas_M,&Blas_N,&Blas_K,qr_basis,&Blas_LDA,qr_tau,gqr_work,&lgqr_work,&lierr)); 2588 if (lierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in UNGQR Lapack routine %d",(int)lierr); 2589 ierr = PetscFPTrapPop();CHKERRQ(ierr); 2590 2591 /* first primal_dofs columns of Q need to be re-scaled in order to be unitary w.r.t constraints 2592 i.e. C_{pxn}*Q_{nxn} should be equal to [I_pxp | 0_pxd] (see check below) 2593 where n=size_of_constraint, p=primal_dofs, d=dual_dofs (n=p+d), I and 0 identity and null matrix resp. */ 2594 ierr = PetscBLASIntCast(size_of_constraint,&Blas_M);CHKERRQ(ierr); 2595 ierr = PetscBLASIntCast(primal_dofs,&Blas_N);CHKERRQ(ierr); 2596 ierr = PetscBLASIntCast(primal_dofs,&Blas_K);CHKERRQ(ierr); 2597 ierr = PetscBLASIntCast(size_of_constraint,&Blas_LDA);CHKERRQ(ierr); 2598 ierr = PetscBLASIntCast(primal_dofs,&Blas_LDB);CHKERRQ(ierr); 2599 ierr = PetscBLASIntCast(size_of_constraint,&Blas_LDC);CHKERRQ(ierr); 2600 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 2601 PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&Blas_M,&Blas_N,&Blas_K,&one,qr_basis,&Blas_LDA,trs_rhs,&Blas_LDB,&zero,&temp_quadrature_constraint[temp_indices[total_counts]],&Blas_LDC)); 2602 ierr = PetscFPTrapPop();CHKERRQ(ierr); 2603 ierr = PetscMemcpy(qr_basis,&temp_quadrature_constraint[temp_indices[total_counts]],size_of_constraint*primal_dofs*sizeof(PetscScalar));CHKERRQ(ierr); 2604 2605 /* insert values in change of basis matrix respecting global ordering of new primal dofs */ 2606 start_rows = &temp_indices_to_constraint[temp_indices[total_counts]]; 2607 /* insert cols for primal dofs */ 2608 for (j=0;j<primal_dofs;j++) { 2609 start_vals = &qr_basis[j*size_of_constraint]; 2610 start_cols = &temp_indices_to_constraint[temp_indices[total_counts]+aux_primal_minloc[primal_counter+j]]; 2611 ierr = MatSetValues(localChangeOfBasisMatrix,size_of_constraint,start_rows,1,start_cols,start_vals,INSERT_VALUES);CHKERRQ(ierr); 2612 } 2613 /* insert cols for dual dofs */ 2614 for (j=0,k=0;j<dual_dofs;k++) { 2615 if (!PetscBTLookup(is_primal,temp_indices_to_constraint_B[temp_indices[total_counts]+k])) { 2616 start_vals = &qr_basis[(primal_dofs+j)*size_of_constraint]; 2617 start_cols = &temp_indices_to_constraint[temp_indices[total_counts]+k]; 2618 ierr = MatSetValues(localChangeOfBasisMatrix,size_of_constraint,start_rows,1,start_cols,start_vals,INSERT_VALUES);CHKERRQ(ierr); 2619 j++; 2620 } 2621 } 2622 2623 /* check change of basis */ 2624 if (pcbddc->dbg_flag) { 2625 PetscInt ii,jj; 2626 PetscBool valid_qr=PETSC_TRUE; 2627 ierr = PetscBLASIntCast(primal_dofs,&Blas_M);CHKERRQ(ierr); 2628 ierr = PetscBLASIntCast(size_of_constraint,&Blas_N);CHKERRQ(ierr); 2629 ierr = PetscBLASIntCast(size_of_constraint,&Blas_K);CHKERRQ(ierr); 2630 ierr = PetscBLASIntCast(size_of_constraint,&Blas_LDA);CHKERRQ(ierr); 2631 ierr = PetscBLASIntCast(size_of_constraint,&Blas_LDB);CHKERRQ(ierr); 2632 ierr = PetscBLASIntCast(primal_dofs,&Blas_LDC);CHKERRQ(ierr); 2633 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 2634 PetscStackCallBLAS("BLASgemm",BLASgemm_("T","N",&Blas_M,&Blas_N,&Blas_K,&one,dbg_work,&Blas_LDA,qr_basis,&Blas_LDB,&zero,&dbg_work[size_of_constraint*primal_dofs],&Blas_LDC)); 2635 ierr = PetscFPTrapPop();CHKERRQ(ierr); 2636 for (jj=0;jj<size_of_constraint;jj++) { 2637 for (ii=0;ii<primal_dofs;ii++) { 2638 if (ii != jj && PetscAbsScalar(dbg_work[size_of_constraint*primal_dofs+jj*primal_dofs+ii]) > 1.e-12) valid_qr = PETSC_FALSE; 2639 if (ii == jj && PetscAbsScalar(dbg_work[size_of_constraint*primal_dofs+jj*primal_dofs+ii]-1.0) > 1.e-12) valid_qr = PETSC_FALSE; 2640 } 2641 } 2642 if (!valid_qr) { 2643 ierr = PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"\t-> wrong change of basis!\n");CHKERRQ(ierr); 2644 for (jj=0;jj<size_of_constraint;jj++) { 2645 for (ii=0;ii<primal_dofs;ii++) { 2646 if (ii != jj && PetscAbsScalar(dbg_work[size_of_constraint*primal_dofs+jj*primal_dofs+ii]) > 1.e-12) { 2647 PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"\tQr basis function %d is not orthogonal to constraint %d (%1.14e)!\n",jj,ii,PetscAbsScalar(dbg_work[size_of_constraint*primal_dofs+jj*primal_dofs+ii])); 2648 } 2649 if (ii == jj && PetscAbsScalar(dbg_work[size_of_constraint*primal_dofs+jj*primal_dofs+ii]-1.0) > 1.e-12) { 2650 PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"\tQr basis function %d is not unitary w.r.t constraint %d (%1.14e)!\n",jj,ii,PetscAbsScalar(dbg_work[size_of_constraint*primal_dofs+jj*primal_dofs+ii])); 2651 } 2652 } 2653 } 2654 } else { 2655 ierr = PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"\t-> right change of basis!\n");CHKERRQ(ierr); 2656 } 2657 } 2658 } else { /* simple transformation block */ 2659 PetscInt row,col; 2660 PetscScalar val,norm; 2661 2662 ierr = PetscBLASIntCast(size_of_constraint,&Blas_N);CHKERRQ(ierr); 2663 PetscStackCallBLAS("BLASdot",norm = BLASdot_(&Blas_N,temp_quadrature_constraint+temp_indices[total_counts],&Blas_one,temp_quadrature_constraint+temp_indices[total_counts],&Blas_one)); 2664 for (j=0;j<size_of_constraint;j++) { 2665 PetscInt row_B = temp_indices_to_constraint_B[temp_indices[total_counts]+j]; 2666 row = temp_indices_to_constraint[temp_indices[total_counts]+j]; 2667 if (!PetscBTLookup(is_primal,row_B)) { 2668 col = temp_indices_to_constraint[temp_indices[total_counts]+aux_primal_minloc[primal_counter]]; 2669 ierr = MatSetValue(localChangeOfBasisMatrix,row,row,1.0,INSERT_VALUES);CHKERRQ(ierr); 2670 ierr = MatSetValue(localChangeOfBasisMatrix,row,col,temp_quadrature_constraint[temp_indices[total_counts]+j]/norm,INSERT_VALUES);CHKERRQ(ierr); 2671 } else { 2672 for (k=0;k<size_of_constraint;k++) { 2673 col = temp_indices_to_constraint[temp_indices[total_counts]+k]; 2674 if (row != col) { 2675 val = -temp_quadrature_constraint[temp_indices[total_counts]+k]/temp_quadrature_constraint[temp_indices[total_counts]+aux_primal_minloc[primal_counter]]; 2676 } else { 2677 val = temp_quadrature_constraint[temp_indices[total_counts]+aux_primal_minloc[primal_counter]]/norm; 2678 } 2679 ierr = MatSetValue(localChangeOfBasisMatrix,row,col,val,INSERT_VALUES);CHKERRQ(ierr); 2680 } 2681 } 2682 } 2683 if (pcbddc->dbg_flag) { 2684 ierr = PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"\t-> using standard change of basis\n");CHKERRQ(ierr); 2685 } 2686 } 2687 /* increment primal counter */ 2688 primal_counter += primal_dofs; 2689 } else { 2690 if (pcbddc->dbg_flag) { 2691 ierr = PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"Constraint %d does not need a change of basis (size %d)\n",total_counts,temp_indices[total_counts+1]-temp_indices[total_counts]);CHKERRQ(ierr); 2692 } 2693 } 2694 /* increment constraint counter total_counts */ 2695 total_counts += primal_dofs; 2696 } 2697 2698 /* free workspace */ 2699 if (qr_needed) { 2700 if (pcbddc->dbg_flag) { 2701 ierr = PetscFree(dbg_work);CHKERRQ(ierr); 2702 } 2703 ierr = PetscFree(trs_rhs);CHKERRQ(ierr); 2704 ierr = PetscFree(qr_tau);CHKERRQ(ierr); 2705 ierr = PetscFree(qr_work);CHKERRQ(ierr); 2706 ierr = PetscFree(gqr_work);CHKERRQ(ierr); 2707 ierr = PetscFree(qr_basis);CHKERRQ(ierr); 2708 } 2709 ierr = PetscBTDestroy(&is_primal);CHKERRQ(ierr); 2710 ierr = MatAssemblyBegin(localChangeOfBasisMatrix,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2711 ierr = MatAssemblyEnd(localChangeOfBasisMatrix,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2712 2713 /* assembling of global change of variable */ 2714 { 2715 Mat tmat; 2716 PetscInt bs; 2717 2718 ierr = VecGetSize(pcis->vec1_global,&global_size);CHKERRQ(ierr); 2719 ierr = VecGetLocalSize(pcis->vec1_global,&local_size);CHKERRQ(ierr); 2720 ierr = MatDuplicate(pc->pmat,MAT_DO_NOT_COPY_VALUES,&tmat);CHKERRQ(ierr); 2721 ierr = MatISSetLocalMat(tmat,localChangeOfBasisMatrix);CHKERRQ(ierr); 2722 ierr = MatCreate(PetscObjectComm((PetscObject)pc),&pcbddc->ChangeOfBasisMatrix);CHKERRQ(ierr); 2723 ierr = MatSetType(pcbddc->ChangeOfBasisMatrix,MATAIJ);CHKERRQ(ierr); 2724 ierr = MatGetBlockSize(pc->pmat,&bs);CHKERRQ(ierr); 2725 ierr = MatSetBlockSize(pcbddc->ChangeOfBasisMatrix,bs);CHKERRQ(ierr); 2726 ierr = MatSetSizes(pcbddc->ChangeOfBasisMatrix,local_size,local_size,global_size,global_size);CHKERRQ(ierr); 2727 ierr = MatISSetMPIXAIJPreallocation_Private(tmat,pcbddc->ChangeOfBasisMatrix,PETSC_TRUE);CHKERRQ(ierr); 2728 ierr = MatISGetMPIXAIJ(tmat,MAT_REUSE_MATRIX,&pcbddc->ChangeOfBasisMatrix);CHKERRQ(ierr); 2729 ierr = MatDestroy(&tmat);CHKERRQ(ierr); 2730 ierr = VecSet(pcis->vec1_global,0.0);CHKERRQ(ierr); 2731 ierr = VecSet(pcis->vec1_N,1.0);CHKERRQ(ierr); 2732 ierr = VecScatterBegin(matis->ctx,pcis->vec1_N,pcis->vec1_global,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 2733 ierr = VecScatterEnd(matis->ctx,pcis->vec1_N,pcis->vec1_global,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 2734 ierr = VecReciprocal(pcis->vec1_global);CHKERRQ(ierr); 2735 ierr = MatDiagonalScale(pcbddc->ChangeOfBasisMatrix,pcis->vec1_global,NULL);CHKERRQ(ierr); 2736 } 2737 /* check */ 2738 if (pcbddc->dbg_flag) { 2739 PetscReal error; 2740 Vec x,x_change; 2741 2742 ierr = VecDuplicate(pcis->vec1_global,&x);CHKERRQ(ierr); 2743 ierr = VecDuplicate(pcis->vec1_global,&x_change);CHKERRQ(ierr); 2744 ierr = VecSetRandom(x,NULL);CHKERRQ(ierr); 2745 ierr = VecCopy(x,pcis->vec1_global);CHKERRQ(ierr); 2746 ierr = VecScatterBegin(matis->ctx,x,pcis->vec1_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2747 ierr = VecScatterEnd(matis->ctx,x,pcis->vec1_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2748 ierr = MatMult(localChangeOfBasisMatrix,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr); 2749 ierr = VecScatterBegin(matis->ctx,pcis->vec2_N,x,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 2750 ierr = VecScatterEnd(matis->ctx,pcis->vec2_N,x,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 2751 ierr = MatMult(pcbddc->ChangeOfBasisMatrix,pcis->vec1_global,x_change);CHKERRQ(ierr); 2752 ierr = VecAXPY(x,-1.0,x_change);CHKERRQ(ierr); 2753 ierr = VecNorm(x,NORM_INFINITY,&error);CHKERRQ(ierr); 2754 ierr = PetscViewerFlush(pcbddc->dbg_viewer);CHKERRQ(ierr); 2755 ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"Error global vs local change: %1.6e\n",error);CHKERRQ(ierr); 2756 ierr = VecDestroy(&x);CHKERRQ(ierr); 2757 ierr = VecDestroy(&x_change);CHKERRQ(ierr); 2758 } 2759 2760 /* adapt sub_schurs computed (if any) */ 2761 if (pcbddc->use_deluxe_scaling) { 2762 PCBDDCSubSchurs sub_schurs=pcbddc->sub_schurs; 2763 if (sub_schurs->S_Ej_all) { 2764 Mat S_new,tmat; 2765 IS is_all_N; 2766 2767 ierr = ISLocalToGlobalMappingApplyIS(pcis->BtoNmap,sub_schurs->is_Ej_all,&is_all_N);CHKERRQ(ierr); 2768 ierr = MatGetSubMatrixUnsorted(localChangeOfBasisMatrix,is_all_N,is_all_N,&tmat);CHKERRQ(ierr); 2769 ierr = ISDestroy(&is_all_N);CHKERRQ(ierr); 2770 ierr = MatPtAP(sub_schurs->S_Ej_all,tmat,MAT_INITIAL_MATRIX,1.0,&S_new);CHKERRQ(ierr); 2771 ierr = MatDestroy(&sub_schurs->S_Ej_all);CHKERRQ(ierr); 2772 ierr = PetscObjectReference((PetscObject)S_new);CHKERRQ(ierr); 2773 sub_schurs->S_Ej_all = S_new; 2774 ierr = MatDestroy(&S_new);CHKERRQ(ierr); 2775 if (sub_schurs->sum_S_Ej_all) { 2776 ierr = MatPtAP(sub_schurs->sum_S_Ej_all,tmat,MAT_INITIAL_MATRIX,1.0,&S_new);CHKERRQ(ierr); 2777 ierr = MatDestroy(&sub_schurs->sum_S_Ej_all);CHKERRQ(ierr); 2778 ierr = PetscObjectReference((PetscObject)S_new);CHKERRQ(ierr); 2779 sub_schurs->sum_S_Ej_all = S_new; 2780 ierr = MatDestroy(&S_new);CHKERRQ(ierr); 2781 } 2782 ierr = MatDestroy(&tmat);CHKERRQ(ierr); 2783 } 2784 } 2785 ierr = MatDestroy(&localChangeOfBasisMatrix);CHKERRQ(ierr); 2786 } else if (pcbddc->user_ChangeOfBasisMatrix) { 2787 ierr = PetscObjectReference((PetscObject)pcbddc->user_ChangeOfBasisMatrix);CHKERRQ(ierr); 2788 pcbddc->ChangeOfBasisMatrix = pcbddc->user_ChangeOfBasisMatrix; 2789 } 2790 2791 /* set up change of basis context */ 2792 if (pcbddc->ChangeOfBasisMatrix) { 2793 PCBDDCChange_ctx change_ctx; 2794 2795 if (!pcbddc->new_global_mat) { 2796 PetscInt global_size,local_size; 2797 2798 ierr = VecGetSize(pcis->vec1_global,&global_size);CHKERRQ(ierr); 2799 ierr = VecGetLocalSize(pcis->vec1_global,&local_size);CHKERRQ(ierr); 2800 ierr = MatCreate(PetscObjectComm((PetscObject)pc),&pcbddc->new_global_mat);CHKERRQ(ierr); 2801 ierr = MatSetSizes(pcbddc->new_global_mat,local_size,local_size,global_size,global_size);CHKERRQ(ierr); 2802 ierr = MatSetType(pcbddc->new_global_mat,MATSHELL);CHKERRQ(ierr); 2803 ierr = MatShellSetOperation(pcbddc->new_global_mat,MATOP_MULT,(void (*)(void))PCBDDCMatMult_Private);CHKERRQ(ierr); 2804 ierr = MatShellSetOperation(pcbddc->new_global_mat,MATOP_MULT_TRANSPOSE,(void (*)(void))PCBDDCMatMultTranspose_Private);CHKERRQ(ierr); 2805 ierr = PetscNew(&change_ctx);CHKERRQ(ierr); 2806 ierr = MatShellSetContext(pcbddc->new_global_mat,change_ctx);CHKERRQ(ierr); 2807 } else { 2808 ierr = MatShellGetContext(pcbddc->new_global_mat,&change_ctx);CHKERRQ(ierr); 2809 ierr = MatDestroy(&change_ctx->global_change);CHKERRQ(ierr); 2810 ierr = VecDestroyVecs(2,&change_ctx->work);CHKERRQ(ierr); 2811 } 2812 if (!pcbddc->user_ChangeOfBasisMatrix) { 2813 ierr = PetscObjectReference((PetscObject)pcbddc->ChangeOfBasisMatrix);CHKERRQ(ierr); 2814 change_ctx->global_change = pcbddc->ChangeOfBasisMatrix; 2815 } else { 2816 ierr = PetscObjectReference((PetscObject)pcbddc->user_ChangeOfBasisMatrix);CHKERRQ(ierr); 2817 change_ctx->global_change = pcbddc->user_ChangeOfBasisMatrix; 2818 } 2819 ierr = VecDuplicateVecs(pcis->vec1_global,2,&change_ctx->work);CHKERRQ(ierr); 2820 ierr = MatSetUp(pcbddc->new_global_mat);CHKERRQ(ierr); 2821 ierr = MatAssemblyBegin(pcbddc->new_global_mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2822 ierr = MatAssemblyEnd(pcbddc->new_global_mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2823 } 2824 2825 /* get indices in local ordering for vertices and constraints */ 2826 if (olocal_primal_size == pcbddc->local_primal_size) { /* if this is true, I need to check if a new primal space has been introduced */ 2827 ierr = PetscMalloc1(olocal_primal_size,&oprimal_indices_local_idxs);CHKERRQ(ierr); 2828 ierr = PetscMemcpy(oprimal_indices_local_idxs,pcbddc->primal_indices_local_idxs,olocal_primal_size*sizeof(PetscInt));CHKERRQ(ierr); 2829 } 2830 ierr = PetscFree(aux_primal_numbering);CHKERRQ(ierr); 2831 ierr = PetscFree(pcbddc->primal_indices_local_idxs);CHKERRQ(ierr); 2832 ierr = PetscMalloc1(pcbddc->local_primal_size,&pcbddc->primal_indices_local_idxs);CHKERRQ(ierr); 2833 ierr = PCBDDCGetPrimalVerticesLocalIdx(pc,&i,&aux_primal_numbering);CHKERRQ(ierr); 2834 ierr = PetscMemcpy(pcbddc->primal_indices_local_idxs,aux_primal_numbering,i*sizeof(PetscInt));CHKERRQ(ierr); 2835 ierr = PetscFree(aux_primal_numbering);CHKERRQ(ierr); 2836 ierr = PCBDDCGetPrimalConstraintsLocalIdx(pc,&j,&aux_primal_numbering);CHKERRQ(ierr); 2837 ierr = PetscMemcpy(&pcbddc->primal_indices_local_idxs[i],aux_primal_numbering,j*sizeof(PetscInt));CHKERRQ(ierr); 2838 ierr = PetscFree(aux_primal_numbering);CHKERRQ(ierr); 2839 /* set quantities in PCBDDC data struct */ 2840 pcbddc->n_actual_vertices = i; 2841 /* check if a new primal space has been introduced */ 2842 pcbddc->new_primal_space_local = PETSC_TRUE; 2843 if (olocal_primal_size == pcbddc->local_primal_size) { 2844 ierr = PetscMemcmp(pcbddc->primal_indices_local_idxs,oprimal_indices_local_idxs,olocal_primal_size,&pcbddc->new_primal_space_local);CHKERRQ(ierr); 2845 pcbddc->new_primal_space_local = (PetscBool)(!pcbddc->new_primal_space_local); 2846 ierr = PetscFree(oprimal_indices_local_idxs);CHKERRQ(ierr); 2847 } 2848 /* new_primal_space will be used for numbering of coarse dofs, so it should be the same across all subdomains */ 2849 ierr = MPI_Allreduce(&pcbddc->new_primal_space_local,&pcbddc->new_primal_space,1,MPIU_BOOL,MPI_LOR,PetscObjectComm((PetscObject)pc));CHKERRQ(ierr); 2850 2851 /* flush dbg viewer */ 2852 if (pcbddc->dbg_flag) { 2853 ierr = PetscViewerFlush(pcbddc->dbg_viewer);CHKERRQ(ierr); 2854 } 2855 2856 /* free workspace */ 2857 ierr = PetscBTDestroy(&touched);CHKERRQ(ierr); 2858 ierr = PetscBTDestroy(&qr_needed_idx);CHKERRQ(ierr); 2859 ierr = PetscFree(aux_primal_minloc);CHKERRQ(ierr); 2860 ierr = PetscBTDestroy(&change_basis);CHKERRQ(ierr); 2861 if (!pcbddc->adaptive_selection) { 2862 ierr = PetscFree(temp_indices);CHKERRQ(ierr); 2863 ierr = PetscFree3(temp_quadrature_constraint,temp_indices_to_constraint,temp_indices_to_constraint_B);CHKERRQ(ierr); 2864 } else { 2865 ierr = PetscFree4(pcbddc->adaptive_constraints_n, 2866 pcbddc->adaptive_constraints_ptrs, 2867 pcbddc->adaptive_constraints_idxs, 2868 pcbddc->adaptive_constraints_data);CHKERRQ(ierr); 2869 ierr = PetscFree(temp_indices_to_constraint_B);CHKERRQ(ierr); 2870 } 2871 PetscFunctionReturn(0); 2872 } 2873 2874 #undef __FUNCT__ 2875 #define __FUNCT__ "PCBDDCAnalyzeInterface" 2876 PetscErrorCode PCBDDCAnalyzeInterface(PC pc) 2877 { 2878 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 2879 PC_IS *pcis = (PC_IS*)pc->data; 2880 Mat_IS *matis = (Mat_IS*)pc->pmat->data; 2881 PetscInt ierr,i,vertex_size,N; 2882 PetscViewer viewer=pcbddc->dbg_viewer; 2883 2884 PetscFunctionBegin; 2885 /* Reset previously computed graph */ 2886 ierr = PCBDDCGraphReset(pcbddc->mat_graph);CHKERRQ(ierr); 2887 /* Init local Graph struct */ 2888 ierr = MatGetSize(pc->pmat,&N,NULL);CHKERRQ(ierr); 2889 ierr = PCBDDCGraphInit(pcbddc->mat_graph,matis->mapping,N);CHKERRQ(ierr); 2890 2891 /* Check validity of the csr graph passed in by the user */ 2892 if (pcbddc->mat_graph->nvtxs_csr != pcbddc->mat_graph->nvtxs) { 2893 ierr = PCBDDCGraphResetCSR(pcbddc->mat_graph);CHKERRQ(ierr); 2894 } 2895 2896 /* Set default CSR adjacency of local dofs if not provided by the user with PCBDDCSetLocalAdjacencyGraph */ 2897 if (!pcbddc->mat_graph->xadj || !pcbddc->mat_graph->adjncy) { 2898 PetscInt *xadj,*adjncy; 2899 PetscInt nvtxs; 2900 PetscBool flg_row=PETSC_FALSE; 2901 2902 if (pcbddc->use_local_adj) { 2903 2904 ierr = MatGetRowIJ(matis->A,0,PETSC_TRUE,PETSC_FALSE,&nvtxs,(const PetscInt**)&xadj,(const PetscInt**)&adjncy,&flg_row);CHKERRQ(ierr); 2905 if (flg_row) { 2906 ierr = PCBDDCSetLocalAdjacencyGraph(pc,nvtxs,xadj,adjncy,PETSC_COPY_VALUES);CHKERRQ(ierr); 2907 pcbddc->computed_rowadj = PETSC_TRUE; 2908 } 2909 ierr = MatRestoreRowIJ(matis->A,0,PETSC_TRUE,PETSC_FALSE,&nvtxs,(const PetscInt**)&xadj,(const PetscInt**)&adjncy,&flg_row);CHKERRQ(ierr); 2910 } else if (pcbddc->current_level) { /* just compute subdomain's connected components for coarser levels */ 2911 IS is_dummy; 2912 ISLocalToGlobalMapping l2gmap_dummy; 2913 PetscInt j,sum; 2914 PetscInt *cxadj,*cadjncy; 2915 const PetscInt *idxs; 2916 PCBDDCGraph graph; 2917 PetscBT is_on_boundary; 2918 2919 ierr = ISCreateStride(PETSC_COMM_SELF,pcis->n,0,1,&is_dummy);CHKERRQ(ierr); 2920 ierr = ISLocalToGlobalMappingCreateIS(is_dummy,&l2gmap_dummy);CHKERRQ(ierr); 2921 ierr = ISDestroy(&is_dummy);CHKERRQ(ierr); 2922 ierr = PCBDDCGraphCreate(&graph);CHKERRQ(ierr); 2923 ierr = PCBDDCGraphInit(graph,l2gmap_dummy,pcis->n);CHKERRQ(ierr); 2924 ierr = ISLocalToGlobalMappingDestroy(&l2gmap_dummy);CHKERRQ(ierr); 2925 ierr = MatGetRowIJ(matis->A,0,PETSC_TRUE,PETSC_FALSE,&nvtxs,(const PetscInt**)&xadj,(const PetscInt**)&adjncy,&flg_row);CHKERRQ(ierr); 2926 if (flg_row) { 2927 graph->xadj = xadj; 2928 graph->adjncy = adjncy; 2929 } 2930 ierr = PCBDDCGraphSetUp(graph,1,NULL,NULL,0,NULL,NULL);CHKERRQ(ierr); 2931 ierr = PCBDDCGraphComputeConnectedComponents(graph);CHKERRQ(ierr); 2932 ierr = MatRestoreRowIJ(matis->A,0,PETSC_TRUE,PETSC_FALSE,&nvtxs,(const PetscInt**)&xadj,(const PetscInt**)&adjncy,&flg_row);CHKERRQ(ierr); 2933 2934 if (pcbddc->dbg_flag) { 2935 ierr = PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"[%d] Found %d subdomains\n",PetscGlobalRank,graph->ncc);CHKERRQ(ierr); 2936 for (i=0;i<graph->ncc;i++) { 2937 ierr = PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"[%d] %d cc size %d\n",PetscGlobalRank,i,graph->cptr[i+1]-graph->cptr[i]);CHKERRQ(ierr); 2938 } 2939 ierr = PetscViewerFlush(pcbddc->dbg_viewer);CHKERRQ(ierr); 2940 } 2941 2942 ierr = PetscBTCreate(pcis->n,&is_on_boundary);CHKERRQ(ierr); 2943 ierr = ISGetIndices(pcis->is_B_local,&idxs);CHKERRQ(ierr); 2944 for (i=0;i<pcis->n_B;i++) { 2945 ierr = PetscBTSet(is_on_boundary,idxs[i]);CHKERRQ(ierr); 2946 } 2947 ierr = ISRestoreIndices(pcis->is_B_local,&idxs);CHKERRQ(ierr); 2948 2949 ierr = PetscCalloc1(pcis->n+1,&cxadj);CHKERRQ(ierr); 2950 sum = 0; 2951 for (i=0;i<graph->ncc;i++) { 2952 PetscInt sizecc = 0; 2953 for (j=graph->cptr[i];j<graph->cptr[i+1];j++) { 2954 if (PetscBTLookup(is_on_boundary,graph->queue[j])) { 2955 sizecc++; 2956 } 2957 } 2958 for (j=graph->cptr[i];j<graph->cptr[i+1];j++) { 2959 if (PetscBTLookup(is_on_boundary,graph->queue[j])) { 2960 cxadj[graph->queue[j]] = sizecc; 2961 } 2962 } 2963 sum += sizecc*sizecc; 2964 } 2965 ierr = PetscMalloc1(sum,&cadjncy);CHKERRQ(ierr); 2966 sum = 0; 2967 for (i=0;i<pcis->n;i++) { 2968 PetscInt temp = cxadj[i]; 2969 cxadj[i] = sum; 2970 sum += temp; 2971 } 2972 cxadj[pcis->n] = sum; 2973 for (i=0;i<graph->ncc;i++) { 2974 for (j=graph->cptr[i];j<graph->cptr[i+1];j++) { 2975 if (PetscBTLookup(is_on_boundary,graph->queue[j])) { 2976 PetscInt k,sizecc = 0; 2977 for (k=graph->cptr[i];k<graph->cptr[i+1];k++) { 2978 if (PetscBTLookup(is_on_boundary,graph->queue[k])) { 2979 cadjncy[cxadj[graph->queue[j]]+sizecc]=graph->queue[k]; 2980 sizecc++; 2981 } 2982 } 2983 } 2984 } 2985 } 2986 if (pcis->n) { 2987 ierr = PCBDDCSetLocalAdjacencyGraph(pc,pcis->n,cxadj,cadjncy,PETSC_OWN_POINTER);CHKERRQ(ierr); 2988 } else { 2989 ierr = PetscFree(cxadj);CHKERRQ(ierr); 2990 ierr = PetscFree(cadjncy);CHKERRQ(ierr); 2991 } 2992 graph->xadj = 0; 2993 graph->adjncy = 0; 2994 ierr = PCBDDCGraphDestroy(&graph);CHKERRQ(ierr); 2995 ierr = PetscBTDestroy(&is_on_boundary);CHKERRQ(ierr); 2996 } 2997 } 2998 2999 /* Set default dofs' splitting if no information has been provided by the user with PCBDDCSetDofsSplitting or PCBDDCSetDofsSplittingLocal */ 3000 vertex_size = 1; 3001 if (pcbddc->user_provided_isfordofs) { 3002 if (pcbddc->n_ISForDofs) { /* need to convert from global to local and remove references to global dofs splitting */ 3003 ierr = PetscMalloc1(pcbddc->n_ISForDofs,&pcbddc->ISForDofsLocal);CHKERRQ(ierr); 3004 for (i=0;i<pcbddc->n_ISForDofs;i++) { 3005 ierr = PCBDDCGlobalToLocal(matis->ctx,pcis->vec1_global,pcis->vec1_N,pcbddc->ISForDofs[i],&pcbddc->ISForDofsLocal[i]);CHKERRQ(ierr); 3006 ierr = ISDestroy(&pcbddc->ISForDofs[i]);CHKERRQ(ierr); 3007 } 3008 pcbddc->n_ISForDofsLocal = pcbddc->n_ISForDofs; 3009 pcbddc->n_ISForDofs = 0; 3010 ierr = PetscFree(pcbddc->ISForDofs);CHKERRQ(ierr); 3011 } 3012 /* mat block size as vertex size (used for elasticity with rigid body modes as nearnullspace) */ 3013 ierr = MatGetBlockSize(matis->A,&vertex_size);CHKERRQ(ierr); 3014 } else { 3015 if (!pcbddc->n_ISForDofsLocal) { /* field split not present, create it in local ordering */ 3016 ierr = MatGetBlockSize(pc->pmat,&pcbddc->n_ISForDofsLocal);CHKERRQ(ierr); 3017 ierr = PetscMalloc1(pcbddc->n_ISForDofsLocal,&pcbddc->ISForDofsLocal);CHKERRQ(ierr); 3018 for (i=0;i<pcbddc->n_ISForDofsLocal;i++) { 3019 ierr = ISCreateStride(PetscObjectComm((PetscObject)pc),pcis->n/pcbddc->n_ISForDofsLocal,i,pcbddc->n_ISForDofsLocal,&pcbddc->ISForDofsLocal[i]);CHKERRQ(ierr); 3020 } 3021 } 3022 } 3023 3024 /* Setup of Graph */ 3025 if (!pcbddc->DirichletBoundariesLocal && pcbddc->DirichletBoundaries) { /* need to convert from global to local */ 3026 ierr = PCBDDCGlobalToLocal(matis->ctx,pcis->vec1_global,pcis->vec1_N,pcbddc->DirichletBoundaries,&pcbddc->DirichletBoundariesLocal);CHKERRQ(ierr); 3027 } 3028 if (!pcbddc->NeumannBoundariesLocal && pcbddc->NeumannBoundaries) { /* need to convert from global to local */ 3029 ierr = PCBDDCGlobalToLocal(matis->ctx,pcis->vec1_global,pcis->vec1_N,pcbddc->NeumannBoundaries,&pcbddc->NeumannBoundariesLocal);CHKERRQ(ierr); 3030 } 3031 ierr = PCBDDCGraphSetUp(pcbddc->mat_graph,vertex_size,pcbddc->NeumannBoundariesLocal,pcbddc->DirichletBoundariesLocal,pcbddc->n_ISForDofsLocal,pcbddc->ISForDofsLocal,pcbddc->user_primal_vertices);CHKERRQ(ierr); 3032 3033 /* Graph's connected components analysis */ 3034 ierr = PCBDDCGraphComputeConnectedComponents(pcbddc->mat_graph);CHKERRQ(ierr); 3035 3036 /* print some info to stdout */ 3037 if (pcbddc->dbg_flag) { 3038 ierr = PCBDDCGraphASCIIView(pcbddc->mat_graph,pcbddc->dbg_flag,viewer);CHKERRQ(ierr); 3039 } 3040 3041 /* mark topography has done */ 3042 pcbddc->recompute_topography = PETSC_FALSE; 3043 PetscFunctionReturn(0); 3044 } 3045 3046 #undef __FUNCT__ 3047 #define __FUNCT__ "PCBDDCGetPrimalVerticesLocalIdx" 3048 PetscErrorCode PCBDDCGetPrimalVerticesLocalIdx(PC pc, PetscInt *n_vertices, PetscInt **vertices_idx) 3049 { 3050 PC_BDDC *pcbddc = (PC_BDDC*)(pc->data); 3051 PetscInt *vertices,*row_cmat_indices,n,i,size_of_constraint,local_primal_size; 3052 PetscErrorCode ierr; 3053 3054 PetscFunctionBegin; 3055 n = 0; 3056 vertices = 0; 3057 if (pcbddc->ConstraintMatrix) { 3058 ierr = MatGetSize(pcbddc->ConstraintMatrix,&local_primal_size,&i);CHKERRQ(ierr); 3059 for (i=0;i<local_primal_size;i++) { 3060 ierr = MatGetRow(pcbddc->ConstraintMatrix,i,&size_of_constraint,NULL,NULL);CHKERRQ(ierr); 3061 if (size_of_constraint == 1) n++; 3062 ierr = MatRestoreRow(pcbddc->ConstraintMatrix,i,&size_of_constraint,NULL,NULL);CHKERRQ(ierr); 3063 } 3064 if (vertices_idx) { 3065 ierr = PetscMalloc1(n,&vertices);CHKERRQ(ierr); 3066 n = 0; 3067 for (i=0;i<local_primal_size;i++) { 3068 ierr = MatGetRow(pcbddc->ConstraintMatrix,i,&size_of_constraint,(const PetscInt**)&row_cmat_indices,NULL);CHKERRQ(ierr); 3069 if (size_of_constraint == 1) { 3070 vertices[n++]=row_cmat_indices[0]; 3071 } 3072 ierr = MatRestoreRow(pcbddc->ConstraintMatrix,i,&size_of_constraint,(const PetscInt**)&row_cmat_indices,NULL);CHKERRQ(ierr); 3073 } 3074 } 3075 } 3076 *n_vertices = n; 3077 if (vertices_idx) *vertices_idx = vertices; 3078 PetscFunctionReturn(0); 3079 } 3080 3081 #undef __FUNCT__ 3082 #define __FUNCT__ "PCBDDCGetPrimalConstraintsLocalIdx" 3083 PetscErrorCode PCBDDCGetPrimalConstraintsLocalIdx(PC pc, PetscInt *n_constraints, PetscInt **constraints_idx) 3084 { 3085 PC_BDDC *pcbddc = (PC_BDDC*)(pc->data); 3086 PetscInt *constraints_index,*row_cmat_indices,*row_cmat_global_indices; 3087 PetscInt n,i,j,size_of_constraint,local_primal_size,local_size,max_size_of_constraint,min_index,min_loc; 3088 PetscBT touched; 3089 PetscErrorCode ierr; 3090 3091 /* This function assumes that the number of local constraints per connected component 3092 is not greater than the number of nodes defined for the connected component 3093 (otherwise we will surely have linear dependence between constraints and thus a singular coarse problem) */ 3094 PetscFunctionBegin; 3095 n = 0; 3096 constraints_index = 0; 3097 if (pcbddc->ConstraintMatrix) { 3098 ierr = MatGetSize(pcbddc->ConstraintMatrix,&local_primal_size,&local_size);CHKERRQ(ierr); 3099 max_size_of_constraint = 0; 3100 for (i=0;i<local_primal_size;i++) { 3101 ierr = MatGetRow(pcbddc->ConstraintMatrix,i,&size_of_constraint,NULL,NULL);CHKERRQ(ierr); 3102 if (size_of_constraint > 1) { 3103 n++; 3104 } 3105 max_size_of_constraint = PetscMax(size_of_constraint,max_size_of_constraint); 3106 ierr = MatRestoreRow(pcbddc->ConstraintMatrix,i,&size_of_constraint,NULL,NULL);CHKERRQ(ierr); 3107 } 3108 if (constraints_idx) { 3109 ierr = PetscMalloc1(n,&constraints_index);CHKERRQ(ierr); 3110 ierr = PetscMalloc1(max_size_of_constraint,&row_cmat_global_indices);CHKERRQ(ierr); 3111 ierr = PetscBTCreate(local_size,&touched);CHKERRQ(ierr); 3112 n = 0; 3113 for (i=0;i<local_primal_size;i++) { 3114 ierr = MatGetRow(pcbddc->ConstraintMatrix,i,&size_of_constraint,(const PetscInt**)&row_cmat_indices,NULL);CHKERRQ(ierr); 3115 if (size_of_constraint > 1) { 3116 ierr = ISLocalToGlobalMappingApply(pcbddc->mat_graph->l2gmap,size_of_constraint,row_cmat_indices,row_cmat_global_indices);CHKERRQ(ierr); 3117 /* find first untouched local node */ 3118 j = 0; 3119 while (PetscBTLookup(touched,row_cmat_indices[j])) j++; 3120 min_index = row_cmat_global_indices[j]; 3121 min_loc = j; 3122 /* search the minimum among nodes not yet touched on the connected component 3123 since there can be more than one constraint on a single cc */ 3124 for (j=1;j<size_of_constraint;j++) { 3125 if (!PetscBTLookup(touched,row_cmat_indices[j]) && min_index > row_cmat_global_indices[j]) { 3126 min_index = row_cmat_global_indices[j]; 3127 min_loc = j; 3128 } 3129 } 3130 ierr = PetscBTSet(touched,row_cmat_indices[min_loc]);CHKERRQ(ierr); 3131 constraints_index[n++] = row_cmat_indices[min_loc]; 3132 } 3133 ierr = MatRestoreRow(pcbddc->ConstraintMatrix,i,&size_of_constraint,(const PetscInt**)&row_cmat_indices,NULL);CHKERRQ(ierr); 3134 } 3135 ierr = PetscBTDestroy(&touched);CHKERRQ(ierr); 3136 ierr = PetscFree(row_cmat_global_indices);CHKERRQ(ierr); 3137 } 3138 } 3139 *n_constraints = n; 3140 if (constraints_idx) *constraints_idx = constraints_index; 3141 PetscFunctionReturn(0); 3142 } 3143 3144 #undef __FUNCT__ 3145 #define __FUNCT__ "PCBDDCSubsetNumbering" 3146 PetscErrorCode PCBDDCSubsetNumbering(MPI_Comm comm,ISLocalToGlobalMapping l2gmap, PetscInt n_local_dofs, PetscInt local_dofs[], PetscInt local_dofs_mult[], PetscInt* n_global_subset, PetscInt* global_numbering_subset[]) 3147 { 3148 Vec local_vec,global_vec; 3149 IS seqis,paris; 3150 VecScatter scatter_ctx; 3151 PetscScalar *array; 3152 PetscInt *temp_global_dofs; 3153 PetscScalar globalsum; 3154 PetscInt i,j,s; 3155 PetscInt nlocals,first_index,old_index,max_local,max_global; 3156 PetscMPIInt rank_prec_comm,size_prec_comm; 3157 PetscInt *dof_sizes,*dof_displs; 3158 PetscBool first_found; 3159 PetscErrorCode ierr; 3160 3161 PetscFunctionBegin; 3162 /* mpi buffers */ 3163 ierr = MPI_Comm_size(comm,&size_prec_comm);CHKERRQ(ierr); 3164 ierr = MPI_Comm_rank(comm,&rank_prec_comm);CHKERRQ(ierr); 3165 j = ( !rank_prec_comm ? size_prec_comm : 0); 3166 ierr = PetscMalloc2(j,&dof_sizes,j,&dof_displs);CHKERRQ(ierr); 3167 /* get maximum size of subset */ 3168 ierr = PetscMalloc1(n_local_dofs,&temp_global_dofs);CHKERRQ(ierr); 3169 ierr = ISLocalToGlobalMappingApply(l2gmap,n_local_dofs,local_dofs,temp_global_dofs);CHKERRQ(ierr); 3170 max_local = 0; 3171 for (i=0;i<n_local_dofs;i++) { 3172 if (max_local < temp_global_dofs[i] ) { 3173 max_local = temp_global_dofs[i]; 3174 } 3175 } 3176 ierr = MPI_Allreduce(&max_local,&max_global,1,MPIU_INT,MPI_MAX,comm);CHKERRQ(ierr); 3177 max_global++; 3178 max_local = 0; 3179 for (i=0;i<n_local_dofs;i++) { 3180 if (max_local < local_dofs[i] ) { 3181 max_local = local_dofs[i]; 3182 } 3183 } 3184 max_local++; 3185 /* allocate workspace */ 3186 ierr = VecCreate(PETSC_COMM_SELF,&local_vec);CHKERRQ(ierr); 3187 ierr = VecSetSizes(local_vec,PETSC_DECIDE,max_local);CHKERRQ(ierr); 3188 ierr = VecSetType(local_vec,VECSEQ);CHKERRQ(ierr); 3189 ierr = VecCreate(comm,&global_vec);CHKERRQ(ierr); 3190 ierr = VecSetSizes(global_vec,PETSC_DECIDE,max_global);CHKERRQ(ierr); 3191 ierr = VecSetType(global_vec,VECMPI);CHKERRQ(ierr); 3192 /* create scatter */ 3193 ierr = ISCreateGeneral(PETSC_COMM_SELF,n_local_dofs,local_dofs,PETSC_COPY_VALUES,&seqis);CHKERRQ(ierr); 3194 ierr = ISCreateGeneral(comm,n_local_dofs,temp_global_dofs,PETSC_COPY_VALUES,&paris);CHKERRQ(ierr); 3195 ierr = VecScatterCreate(local_vec,seqis,global_vec,paris,&scatter_ctx);CHKERRQ(ierr); 3196 ierr = ISDestroy(&seqis);CHKERRQ(ierr); 3197 ierr = ISDestroy(&paris);CHKERRQ(ierr); 3198 /* init array */ 3199 ierr = VecSet(global_vec,0.0);CHKERRQ(ierr); 3200 ierr = VecSet(local_vec,0.0);CHKERRQ(ierr); 3201 ierr = VecGetArray(local_vec,&array);CHKERRQ(ierr); 3202 if (local_dofs_mult) { 3203 for (i=0;i<n_local_dofs;i++) { 3204 array[local_dofs[i]]=(PetscScalar)local_dofs_mult[i]; 3205 } 3206 } else { 3207 for (i=0;i<n_local_dofs;i++) { 3208 array[local_dofs[i]]=1.0; 3209 } 3210 } 3211 ierr = VecRestoreArray(local_vec,&array);CHKERRQ(ierr); 3212 /* scatter into global vec and get total number of global dofs */ 3213 ierr = VecScatterBegin(scatter_ctx,local_vec,global_vec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 3214 ierr = VecScatterEnd(scatter_ctx,local_vec,global_vec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 3215 ierr = VecSum(global_vec,&globalsum);CHKERRQ(ierr); 3216 *n_global_subset = (PetscInt)PetscRealPart(globalsum); 3217 /* Fill global_vec with cumulative function for global numbering */ 3218 ierr = VecGetArray(global_vec,&array);CHKERRQ(ierr); 3219 ierr = VecGetLocalSize(global_vec,&s);CHKERRQ(ierr); 3220 nlocals = 0; 3221 first_index = -1; 3222 first_found = PETSC_FALSE; 3223 for (i=0;i<s;i++) { 3224 if (!first_found && PetscRealPart(array[i]) > 0.1) { 3225 first_found = PETSC_TRUE; 3226 first_index = i; 3227 } 3228 nlocals += (PetscInt)PetscRealPart(array[i]); 3229 } 3230 ierr = MPI_Gather(&nlocals,1,MPIU_INT,dof_sizes,1,MPIU_INT,0,comm);CHKERRQ(ierr); 3231 if (!rank_prec_comm) { 3232 dof_displs[0]=0; 3233 for (i=1;i<size_prec_comm;i++) { 3234 dof_displs[i] = dof_displs[i-1]+dof_sizes[i-1]; 3235 } 3236 } 3237 ierr = MPI_Scatter(dof_displs,1,MPIU_INT,&nlocals,1,MPIU_INT,0,comm);CHKERRQ(ierr); 3238 if (first_found) { 3239 array[first_index] += (PetscScalar)nlocals; 3240 old_index = first_index; 3241 for (i=first_index+1;i<s;i++) { 3242 if (PetscRealPart(array[i]) > 0.1) { 3243 array[i] += array[old_index]; 3244 old_index = i; 3245 } 3246 } 3247 } 3248 ierr = VecRestoreArray(global_vec,&array);CHKERRQ(ierr); 3249 ierr = VecSet(local_vec,0.0);CHKERRQ(ierr); 3250 ierr = VecScatterBegin(scatter_ctx,global_vec,local_vec,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 3251 ierr = VecScatterEnd(scatter_ctx,global_vec,local_vec,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 3252 /* get global ordering of local dofs */ 3253 ierr = VecGetArrayRead(local_vec,(const PetscScalar**)&array);CHKERRQ(ierr); 3254 if (local_dofs_mult) { 3255 for (i=0;i<n_local_dofs;i++) { 3256 temp_global_dofs[i] = (PetscInt)PetscRealPart(array[local_dofs[i]])-local_dofs_mult[i]; 3257 } 3258 } else { 3259 for (i=0;i<n_local_dofs;i++) { 3260 temp_global_dofs[i] = (PetscInt)PetscRealPart(array[local_dofs[i]])-1; 3261 } 3262 } 3263 ierr = VecRestoreArrayRead(local_vec,(const PetscScalar**)&array);CHKERRQ(ierr); 3264 /* free workspace */ 3265 ierr = VecScatterDestroy(&scatter_ctx);CHKERRQ(ierr); 3266 ierr = VecDestroy(&local_vec);CHKERRQ(ierr); 3267 ierr = VecDestroy(&global_vec);CHKERRQ(ierr); 3268 ierr = PetscFree2(dof_sizes,dof_displs);CHKERRQ(ierr); 3269 /* return pointer to global ordering of local dofs */ 3270 *global_numbering_subset = temp_global_dofs; 3271 PetscFunctionReturn(0); 3272 } 3273 3274 #undef __FUNCT__ 3275 #define __FUNCT__ "PCBDDCOrthonormalizeVecs" 3276 PetscErrorCode PCBDDCOrthonormalizeVecs(PetscInt n, Vec vecs[]) 3277 { 3278 PetscInt i,j; 3279 PetscScalar *alphas; 3280 PetscErrorCode ierr; 3281 3282 PetscFunctionBegin; 3283 /* this implements stabilized Gram-Schmidt */ 3284 ierr = PetscMalloc1(n,&alphas);CHKERRQ(ierr); 3285 for (i=0;i<n;i++) { 3286 ierr = VecNormalize(vecs[i],NULL);CHKERRQ(ierr); 3287 if (i<n) { ierr = VecMDot(vecs[i],n-i-1,&vecs[i+1],&alphas[i+1]);CHKERRQ(ierr); } 3288 for (j=i+1;j<n;j++) { ierr = VecAXPY(vecs[j],PetscConj(-alphas[j]),vecs[i]);CHKERRQ(ierr); } 3289 } 3290 ierr = PetscFree(alphas);CHKERRQ(ierr); 3291 PetscFunctionReturn(0); 3292 } 3293 3294 #undef __FUNCT__ 3295 #define __FUNCT__ "MatISGetSubassemblingPattern" 3296 PetscErrorCode MatISGetSubassemblingPattern(Mat mat, PetscInt n_subdomains, PetscBool contiguous, IS* is_sends) 3297 { 3298 Mat subdomain_adj; 3299 IS new_ranks,ranks_send_to; 3300 MatPartitioning partitioner; 3301 Mat_IS *matis; 3302 PetscInt n_neighs,*neighs,*n_shared,**shared; 3303 PetscInt prank; 3304 PetscMPIInt size,rank,color; 3305 PetscInt *xadj,*adjncy,*oldranks; 3306 PetscInt *adjncy_wgt,*v_wgt,*is_indices,*ranks_send_to_idx; 3307 PetscInt i,local_size,threshold=0; 3308 PetscErrorCode ierr; 3309 PetscBool use_vwgt=PETSC_FALSE,use_square=PETSC_FALSE; 3310 PetscSubcomm subcomm; 3311 3312 PetscFunctionBegin; 3313 ierr = PetscOptionsGetBool(NULL,"-matis_partitioning_use_square",&use_square,NULL);CHKERRQ(ierr); 3314 ierr = PetscOptionsGetBool(NULL,"-matis_partitioning_use_vwgt",&use_vwgt,NULL);CHKERRQ(ierr); 3315 ierr = PetscOptionsGetInt(NULL,"-matis_partitioning_threshold",&threshold,NULL);CHKERRQ(ierr); 3316 3317 /* Get info on mapping */ 3318 matis = (Mat_IS*)(mat->data); 3319 ierr = ISLocalToGlobalMappingGetSize(matis->mapping,&local_size);CHKERRQ(ierr); 3320 ierr = ISLocalToGlobalMappingGetInfo(matis->mapping,&n_neighs,&neighs,&n_shared,&shared);CHKERRQ(ierr); 3321 3322 /* build local CSR graph of subdomains' connectivity */ 3323 ierr = PetscMalloc1(2,&xadj);CHKERRQ(ierr); 3324 xadj[0] = 0; 3325 xadj[1] = PetscMax(n_neighs-1,0); 3326 ierr = PetscMalloc1(xadj[1],&adjncy);CHKERRQ(ierr); 3327 ierr = PetscMalloc1(xadj[1],&adjncy_wgt);CHKERRQ(ierr); 3328 3329 if (threshold) { 3330 PetscInt xadj_count = 0; 3331 for (i=1;i<n_neighs;i++) { 3332 if (n_shared[i] > threshold) { 3333 adjncy[xadj_count] = neighs[i]; 3334 adjncy_wgt[xadj_count] = n_shared[i]; 3335 xadj_count++; 3336 } 3337 } 3338 xadj[1] = xadj_count; 3339 } else { 3340 if (xadj[1]) { 3341 ierr = PetscMemcpy(adjncy,&neighs[1],xadj[1]*sizeof(*adjncy));CHKERRQ(ierr); 3342 ierr = PetscMemcpy(adjncy_wgt,&n_shared[1],xadj[1]*sizeof(*adjncy_wgt));CHKERRQ(ierr); 3343 } 3344 } 3345 ierr = ISLocalToGlobalMappingRestoreInfo(matis->mapping,&n_neighs,&neighs,&n_shared,&shared);CHKERRQ(ierr); 3346 if (use_square) { 3347 for (i=0;i<xadj[1];i++) { 3348 adjncy_wgt[i] = adjncy_wgt[i]*adjncy_wgt[i]; 3349 } 3350 } 3351 ierr = PetscSortIntWithArray(xadj[1],adjncy,adjncy_wgt);CHKERRQ(ierr); 3352 3353 ierr = PetscMalloc1(1,&ranks_send_to_idx);CHKERRQ(ierr); 3354 3355 /* 3356 Restrict work on active processes only. 3357 */ 3358 ierr = PetscSubcommCreate(PetscObjectComm((PetscObject)mat),&subcomm);CHKERRQ(ierr); 3359 ierr = PetscSubcommSetNumber(subcomm,2);CHKERRQ(ierr); /* 2 groups, active process and not active processes */ 3360 ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 3361 ierr = PetscMPIIntCast(!local_size,&color);CHKERRQ(ierr); 3362 ierr = PetscSubcommSetTypeGeneral(subcomm,color,rank);CHKERRQ(ierr); 3363 if (color) { 3364 ierr = PetscFree(xadj);CHKERRQ(ierr); 3365 ierr = PetscFree(adjncy);CHKERRQ(ierr); 3366 ierr = PetscFree(adjncy_wgt);CHKERRQ(ierr); 3367 } else { 3368 PetscInt coarsening_ratio; 3369 ierr = MPI_Comm_size(PetscSubcommChild(subcomm),&size);CHKERRQ(ierr); 3370 ierr = PetscMalloc1(size,&oldranks);CHKERRQ(ierr); 3371 prank = rank; 3372 ierr = MPI_Allgather(&prank,1,MPIU_INT,oldranks,1,MPIU_INT,PetscSubcommChild(subcomm));CHKERRQ(ierr); 3373 /* 3374 for (i=0;i<size;i++) { 3375 PetscPrintf(subcomm->comm,"oldranks[%d] = %d\n",i,oldranks[i]); 3376 } 3377 */ 3378 for (i=0;i<xadj[1];i++) { 3379 ierr = PetscFindInt(adjncy[i],size,oldranks,&adjncy[i]);CHKERRQ(ierr); 3380 } 3381 ierr = PetscSortIntWithArray(xadj[1],adjncy,adjncy_wgt);CHKERRQ(ierr); 3382 ierr = MatCreateMPIAdj(PetscSubcommChild(subcomm),1,(PetscInt)size,xadj,adjncy,adjncy_wgt,&subdomain_adj);CHKERRQ(ierr); 3383 /* ierr = MatView(subdomain_adj,0);CHKERRQ(ierr); */ 3384 3385 /* Partition */ 3386 ierr = MatPartitioningCreate(PetscSubcommChild(subcomm),&partitioner);CHKERRQ(ierr); 3387 ierr = MatPartitioningSetAdjacency(partitioner,subdomain_adj);CHKERRQ(ierr); 3388 if (use_vwgt) { 3389 ierr = PetscMalloc1(1,&v_wgt);CHKERRQ(ierr); 3390 v_wgt[0] = local_size; 3391 ierr = MatPartitioningSetVertexWeights(partitioner,v_wgt);CHKERRQ(ierr); 3392 } 3393 n_subdomains = PetscMin((PetscInt)size,n_subdomains); 3394 coarsening_ratio = size/n_subdomains; 3395 ierr = MatPartitioningSetNParts(partitioner,n_subdomains);CHKERRQ(ierr); 3396 ierr = MatPartitioningSetFromOptions(partitioner);CHKERRQ(ierr); 3397 ierr = MatPartitioningApply(partitioner,&new_ranks);CHKERRQ(ierr); 3398 /* ierr = MatPartitioningView(partitioner,0);CHKERRQ(ierr); */ 3399 3400 ierr = ISGetIndices(new_ranks,(const PetscInt**)&is_indices);CHKERRQ(ierr); 3401 if (contiguous) { 3402 ranks_send_to_idx[0] = oldranks[is_indices[0]]; /* contiguos set of processes */ 3403 } else { 3404 ranks_send_to_idx[0] = coarsening_ratio*oldranks[is_indices[0]]; /* scattered set of processes */ 3405 } 3406 ierr = ISRestoreIndices(new_ranks,(const PetscInt**)&is_indices);CHKERRQ(ierr); 3407 /* clean up */ 3408 ierr = PetscFree(oldranks);CHKERRQ(ierr); 3409 ierr = ISDestroy(&new_ranks);CHKERRQ(ierr); 3410 ierr = MatDestroy(&subdomain_adj);CHKERRQ(ierr); 3411 ierr = MatPartitioningDestroy(&partitioner);CHKERRQ(ierr); 3412 } 3413 ierr = PetscSubcommDestroy(&subcomm);CHKERRQ(ierr); 3414 3415 /* assemble parallel IS for sends */ 3416 i = 1; 3417 if (color) i=0; 3418 ierr = ISCreateGeneral(PetscObjectComm((PetscObject)mat),i,ranks_send_to_idx,PETSC_OWN_POINTER,&ranks_send_to);CHKERRQ(ierr); 3419 3420 /* get back IS */ 3421 *is_sends = ranks_send_to; 3422 PetscFunctionReturn(0); 3423 } 3424 3425 typedef enum {MATDENSE_PRIVATE=0,MATAIJ_PRIVATE,MATBAIJ_PRIVATE,MATSBAIJ_PRIVATE}MatTypePrivate; 3426 3427 #undef __FUNCT__ 3428 #define __FUNCT__ "MatISSubassemble" 3429 PetscErrorCode MatISSubassemble(Mat mat, IS is_sends, PetscInt n_subdomains, PetscBool restrict_comm, MatReuse reuse, Mat *mat_n, PetscInt nis, IS isarray[]) 3430 { 3431 Mat local_mat; 3432 Mat_IS *matis; 3433 IS is_sends_internal; 3434 PetscInt rows,cols,new_local_rows; 3435 PetscInt i,bs,buf_size_idxs,buf_size_idxs_is,buf_size_vals; 3436 PetscBool ismatis,isdense,newisdense,destroy_mat; 3437 ISLocalToGlobalMapping l2gmap; 3438 PetscInt* l2gmap_indices; 3439 const PetscInt* is_indices; 3440 MatType new_local_type; 3441 /* buffers */ 3442 PetscInt *ptr_idxs,*send_buffer_idxs,*recv_buffer_idxs; 3443 PetscInt *ptr_idxs_is,*send_buffer_idxs_is,*recv_buffer_idxs_is; 3444 PetscInt *recv_buffer_idxs_local; 3445 PetscScalar *ptr_vals,*send_buffer_vals,*recv_buffer_vals; 3446 /* MPI */ 3447 MPI_Comm comm,comm_n; 3448 PetscSubcomm subcomm; 3449 PetscMPIInt n_sends,n_recvs,commsize; 3450 PetscMPIInt *iflags,*ilengths_idxs,*ilengths_vals,*ilengths_idxs_is; 3451 PetscMPIInt *onodes,*onodes_is,*olengths_idxs,*olengths_idxs_is,*olengths_vals; 3452 PetscMPIInt len,tag_idxs,tag_idxs_is,tag_vals,source_dest; 3453 MPI_Request *send_req_idxs,*send_req_idxs_is,*send_req_vals; 3454 MPI_Request *recv_req_idxs,*recv_req_idxs_is,*recv_req_vals; 3455 PetscErrorCode ierr; 3456 3457 PetscFunctionBegin; 3458 /* TODO: add missing checks */ 3459 PetscValidLogicalCollectiveInt(mat,n_subdomains,3); 3460 PetscValidLogicalCollectiveBool(mat,restrict_comm,4); 3461 PetscValidLogicalCollectiveEnum(mat,reuse,5); 3462 PetscValidLogicalCollectiveInt(mat,nis,7); 3463 ierr = PetscObjectTypeCompare((PetscObject)mat,MATIS,&ismatis);CHKERRQ(ierr); 3464 if (!ismatis) SETERRQ1(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"Cannot use %s on a matrix object which is not of type MATIS",__FUNCT__); 3465 ierr = MatISGetLocalMat(mat,&local_mat);CHKERRQ(ierr); 3466 ierr = PetscObjectTypeCompare((PetscObject)local_mat,MATSEQDENSE,&isdense);CHKERRQ(ierr); 3467 if (!isdense) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"Currently cannot subassemble MATIS when local matrix type is not of type SEQDENSE"); 3468 ierr = MatGetSize(local_mat,&rows,&cols);CHKERRQ(ierr); 3469 if (rows != cols) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"Local MATIS matrices should be square"); 3470 if (reuse == MAT_REUSE_MATRIX && *mat_n) { 3471 PetscInt mrows,mcols,mnrows,mncols; 3472 ierr = PetscObjectTypeCompare((PetscObject)*mat_n,MATIS,&ismatis);CHKERRQ(ierr); 3473 if (!ismatis) SETERRQ(PetscObjectComm((PetscObject)*mat_n),PETSC_ERR_SUP,"Cannot reuse a matrix which is not of type MATIS"); 3474 ierr = MatGetSize(mat,&mrows,&mcols);CHKERRQ(ierr); 3475 ierr = MatGetSize(*mat_n,&mnrows,&mncols);CHKERRQ(ierr); 3476 if (mrows != mnrows) SETERRQ2(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"Cannot reuse matrix! Wrong number of rows %D != %D",mrows,mnrows); 3477 if (mcols != mncols) SETERRQ2(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"Cannot reuse matrix! Wrong number of cols %D != %D",mcols,mncols); 3478 } 3479 ierr = MatGetBlockSize(local_mat,&bs);CHKERRQ(ierr); 3480 PetscValidLogicalCollectiveInt(mat,bs,0); 3481 /* prepare IS for sending if not provided */ 3482 if (!is_sends) { 3483 PetscBool pcontig = PETSC_TRUE; 3484 if (!n_subdomains) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"You should specify either an IS or a target number of subdomains"); 3485 ierr = MatISGetSubassemblingPattern(mat,n_subdomains,pcontig,&is_sends_internal);CHKERRQ(ierr); 3486 } else { 3487 ierr = PetscObjectReference((PetscObject)is_sends);CHKERRQ(ierr); 3488 is_sends_internal = is_sends; 3489 } 3490 3491 /* get pointer of MATIS data */ 3492 matis = (Mat_IS*)mat->data; 3493 3494 /* get comm */ 3495 ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr); 3496 3497 /* compute number of sends */ 3498 ierr = ISGetLocalSize(is_sends_internal,&i);CHKERRQ(ierr); 3499 ierr = PetscMPIIntCast(i,&n_sends);CHKERRQ(ierr); 3500 3501 /* compute number of receives */ 3502 ierr = MPI_Comm_size(comm,&commsize);CHKERRQ(ierr); 3503 ierr = PetscMalloc1(commsize,&iflags);CHKERRQ(ierr); 3504 ierr = PetscMemzero(iflags,commsize*sizeof(*iflags));CHKERRQ(ierr); 3505 ierr = ISGetIndices(is_sends_internal,&is_indices);CHKERRQ(ierr); 3506 for (i=0;i<n_sends;i++) iflags[is_indices[i]] = 1; 3507 ierr = PetscGatherNumberOfMessages(comm,iflags,NULL,&n_recvs);CHKERRQ(ierr); 3508 ierr = PetscFree(iflags);CHKERRQ(ierr); 3509 3510 /* restrict comm if requested */ 3511 subcomm = 0; 3512 destroy_mat = PETSC_FALSE; 3513 if (restrict_comm) { 3514 PetscMPIInt color,subcommsize; 3515 3516 color = 0; 3517 if (!n_recvs) color = 1; /* processes not receiving anything will not partecipate in new comm */ 3518 ierr = MPI_Allreduce(&color,&subcommsize,1,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 3519 subcommsize = commsize - subcommsize; 3520 /* check if reuse has been requested */ 3521 if (reuse == MAT_REUSE_MATRIX) { 3522 if (*mat_n) { 3523 PetscMPIInt subcommsize2; 3524 ierr = MPI_Comm_size(PetscObjectComm((PetscObject)*mat_n),&subcommsize2);CHKERRQ(ierr); 3525 if (subcommsize != subcommsize2) SETERRQ2(PetscObjectComm((PetscObject)*mat_n),PETSC_ERR_PLIB,"Cannot reuse matrix! wrong subcomm size %d != %d",subcommsize,subcommsize2); 3526 comm_n = PetscObjectComm((PetscObject)*mat_n); 3527 } else { 3528 comm_n = PETSC_COMM_SELF; 3529 } 3530 } else { /* MAT_INITIAL_MATRIX */ 3531 PetscMPIInt rank; 3532 3533 ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 3534 ierr = PetscSubcommCreate(comm,&subcomm);CHKERRQ(ierr); 3535 ierr = PetscSubcommSetNumber(subcomm,2);CHKERRQ(ierr); 3536 ierr = PetscSubcommSetTypeGeneral(subcomm,color,rank);CHKERRQ(ierr); 3537 comm_n = PetscSubcommChild(subcomm); 3538 } 3539 /* flag to destroy *mat_n if not significative */ 3540 if (color) destroy_mat = PETSC_TRUE; 3541 } else { 3542 comm_n = comm; 3543 } 3544 3545 /* prepare send/receive buffers */ 3546 ierr = PetscMalloc1(commsize,&ilengths_idxs);CHKERRQ(ierr); 3547 ierr = PetscMemzero(ilengths_idxs,commsize*sizeof(*ilengths_idxs));CHKERRQ(ierr); 3548 ierr = PetscMalloc1(commsize,&ilengths_vals);CHKERRQ(ierr); 3549 ierr = PetscMemzero(ilengths_vals,commsize*sizeof(*ilengths_vals));CHKERRQ(ierr); 3550 if (nis) { 3551 ierr = PetscCalloc1(commsize,&ilengths_idxs_is);CHKERRQ(ierr); 3552 } 3553 3554 /* Get data from local matrices */ 3555 if (!isdense) { 3556 SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"Subassembling of AIJ local matrices not yet implemented"); 3557 /* TODO: See below some guidelines on how to prepare the local buffers */ 3558 /* 3559 send_buffer_vals should contain the raw values of the local matrix 3560 send_buffer_idxs should contain: 3561 - MatType_PRIVATE type 3562 - PetscInt size_of_l2gmap 3563 - PetscInt global_row_indices[size_of_l2gmap] 3564 - PetscInt all_other_info_which_is_needed_to_compute_preallocation_and_set_values 3565 */ 3566 } else { 3567 ierr = MatDenseGetArray(local_mat,&send_buffer_vals);CHKERRQ(ierr); 3568 ierr = ISLocalToGlobalMappingGetSize(matis->mapping,&i);CHKERRQ(ierr); 3569 ierr = PetscMalloc1(i+2,&send_buffer_idxs);CHKERRQ(ierr); 3570 send_buffer_idxs[0] = (PetscInt)MATDENSE_PRIVATE; 3571 send_buffer_idxs[1] = i; 3572 ierr = ISLocalToGlobalMappingGetIndices(matis->mapping,(const PetscInt**)&ptr_idxs);CHKERRQ(ierr); 3573 ierr = PetscMemcpy(&send_buffer_idxs[2],ptr_idxs,i*sizeof(PetscInt));CHKERRQ(ierr); 3574 ierr = ISLocalToGlobalMappingRestoreIndices(matis->mapping,(const PetscInt**)&ptr_idxs);CHKERRQ(ierr); 3575 ierr = PetscMPIIntCast(i,&len);CHKERRQ(ierr); 3576 for (i=0;i<n_sends;i++) { 3577 ilengths_vals[is_indices[i]] = len*len; 3578 ilengths_idxs[is_indices[i]] = len+2; 3579 } 3580 } 3581 ierr = PetscGatherMessageLengths2(comm,n_sends,n_recvs,ilengths_idxs,ilengths_vals,&onodes,&olengths_idxs,&olengths_vals);CHKERRQ(ierr); 3582 /* additional is (if any) */ 3583 if (nis) { 3584 PetscMPIInt psum; 3585 PetscInt j; 3586 for (j=0,psum=0;j<nis;j++) { 3587 PetscInt plen; 3588 ierr = ISGetLocalSize(isarray[j],&plen);CHKERRQ(ierr); 3589 ierr = PetscMPIIntCast(plen,&len);CHKERRQ(ierr); 3590 psum += len+1; /* indices + lenght */ 3591 } 3592 ierr = PetscMalloc1(psum,&send_buffer_idxs_is);CHKERRQ(ierr); 3593 for (j=0,psum=0;j<nis;j++) { 3594 PetscInt plen; 3595 const PetscInt *is_array_idxs; 3596 ierr = ISGetLocalSize(isarray[j],&plen);CHKERRQ(ierr); 3597 send_buffer_idxs_is[psum] = plen; 3598 ierr = ISGetIndices(isarray[j],&is_array_idxs);CHKERRQ(ierr); 3599 ierr = PetscMemcpy(&send_buffer_idxs_is[psum+1],is_array_idxs,plen*sizeof(PetscInt));CHKERRQ(ierr); 3600 ierr = ISRestoreIndices(isarray[j],&is_array_idxs);CHKERRQ(ierr); 3601 psum += plen+1; /* indices + lenght */ 3602 } 3603 for (i=0;i<n_sends;i++) { 3604 ilengths_idxs_is[is_indices[i]] = psum; 3605 } 3606 ierr = PetscGatherMessageLengths(comm,n_sends,n_recvs,ilengths_idxs_is,&onodes_is,&olengths_idxs_is);CHKERRQ(ierr); 3607 } 3608 3609 buf_size_idxs = 0; 3610 buf_size_vals = 0; 3611 buf_size_idxs_is = 0; 3612 for (i=0;i<n_recvs;i++) { 3613 buf_size_idxs += (PetscInt)olengths_idxs[i]; 3614 buf_size_vals += (PetscInt)olengths_vals[i]; 3615 if (nis) buf_size_idxs_is += (PetscInt)olengths_idxs_is[i]; 3616 } 3617 ierr = PetscMalloc1(buf_size_idxs,&recv_buffer_idxs);CHKERRQ(ierr); 3618 ierr = PetscMalloc1(buf_size_vals,&recv_buffer_vals);CHKERRQ(ierr); 3619 ierr = PetscMalloc1(buf_size_idxs_is,&recv_buffer_idxs_is);CHKERRQ(ierr); 3620 3621 /* get new tags for clean communications */ 3622 ierr = PetscObjectGetNewTag((PetscObject)mat,&tag_idxs);CHKERRQ(ierr); 3623 ierr = PetscObjectGetNewTag((PetscObject)mat,&tag_vals);CHKERRQ(ierr); 3624 ierr = PetscObjectGetNewTag((PetscObject)mat,&tag_idxs_is);CHKERRQ(ierr); 3625 3626 /* allocate for requests */ 3627 ierr = PetscMalloc1(n_sends,&send_req_idxs);CHKERRQ(ierr); 3628 ierr = PetscMalloc1(n_sends,&send_req_vals);CHKERRQ(ierr); 3629 ierr = PetscMalloc1(n_sends,&send_req_idxs_is);CHKERRQ(ierr); 3630 ierr = PetscMalloc1(n_recvs,&recv_req_idxs);CHKERRQ(ierr); 3631 ierr = PetscMalloc1(n_recvs,&recv_req_vals);CHKERRQ(ierr); 3632 ierr = PetscMalloc1(n_recvs,&recv_req_idxs_is);CHKERRQ(ierr); 3633 3634 /* communications */ 3635 ptr_idxs = recv_buffer_idxs; 3636 ptr_vals = recv_buffer_vals; 3637 ptr_idxs_is = recv_buffer_idxs_is; 3638 for (i=0;i<n_recvs;i++) { 3639 source_dest = onodes[i]; 3640 ierr = MPI_Irecv(ptr_idxs,olengths_idxs[i],MPIU_INT,source_dest,tag_idxs,comm,&recv_req_idxs[i]);CHKERRQ(ierr); 3641 ierr = MPI_Irecv(ptr_vals,olengths_vals[i],MPIU_SCALAR,source_dest,tag_vals,comm,&recv_req_vals[i]);CHKERRQ(ierr); 3642 ptr_idxs += olengths_idxs[i]; 3643 ptr_vals += olengths_vals[i]; 3644 if (nis) { 3645 ierr = MPI_Irecv(ptr_idxs_is,olengths_idxs_is[i],MPIU_INT,source_dest,tag_idxs_is,comm,&recv_req_idxs_is[i]);CHKERRQ(ierr); 3646 ptr_idxs_is += olengths_idxs_is[i]; 3647 } 3648 } 3649 for (i=0;i<n_sends;i++) { 3650 ierr = PetscMPIIntCast(is_indices[i],&source_dest);CHKERRQ(ierr); 3651 ierr = MPI_Isend(send_buffer_idxs,ilengths_idxs[source_dest],MPIU_INT,source_dest,tag_idxs,comm,&send_req_idxs[i]);CHKERRQ(ierr); 3652 ierr = MPI_Isend(send_buffer_vals,ilengths_vals[source_dest],MPIU_SCALAR,source_dest,tag_vals,comm,&send_req_vals[i]);CHKERRQ(ierr); 3653 if (nis) { 3654 ierr = MPI_Isend(send_buffer_idxs_is,ilengths_idxs_is[source_dest],MPIU_INT,source_dest,tag_idxs_is,comm,&send_req_idxs_is[i]);CHKERRQ(ierr); 3655 } 3656 } 3657 ierr = ISRestoreIndices(is_sends_internal,&is_indices);CHKERRQ(ierr); 3658 ierr = ISDestroy(&is_sends_internal);CHKERRQ(ierr); 3659 3660 /* assemble new l2g map */ 3661 ierr = MPI_Waitall(n_recvs,recv_req_idxs,MPI_STATUSES_IGNORE);CHKERRQ(ierr); 3662 ptr_idxs = recv_buffer_idxs; 3663 new_local_rows = 0; 3664 for (i=0;i<n_recvs;i++) { 3665 new_local_rows += *(ptr_idxs+1); /* second element is the local size of the l2gmap */ 3666 ptr_idxs += olengths_idxs[i]; 3667 } 3668 ierr = PetscMalloc1(new_local_rows,&l2gmap_indices);CHKERRQ(ierr); 3669 ptr_idxs = recv_buffer_idxs; 3670 new_local_rows = 0; 3671 for (i=0;i<n_recvs;i++) { 3672 ierr = PetscMemcpy(&l2gmap_indices[new_local_rows],ptr_idxs+2,(*(ptr_idxs+1))*sizeof(PetscInt));CHKERRQ(ierr); 3673 new_local_rows += *(ptr_idxs+1); /* second element is the local size of the l2gmap */ 3674 ptr_idxs += olengths_idxs[i]; 3675 } 3676 ierr = PetscSortRemoveDupsInt(&new_local_rows,l2gmap_indices);CHKERRQ(ierr); 3677 ierr = ISLocalToGlobalMappingCreate(comm_n,1,new_local_rows,l2gmap_indices,PETSC_COPY_VALUES,&l2gmap);CHKERRQ(ierr); 3678 ierr = PetscFree(l2gmap_indices);CHKERRQ(ierr); 3679 3680 /* infer new local matrix type from received local matrices type */ 3681 /* currently if all local matrices are of type X, then the resulting matrix will be of type X, except for the dense case */ 3682 /* it also assumes that if the block size is set, than it is the same among all local matrices (see checks at the beginning of the function) */ 3683 if (n_recvs) { 3684 MatTypePrivate new_local_type_private = (MatTypePrivate)send_buffer_idxs[0]; 3685 ptr_idxs = recv_buffer_idxs; 3686 for (i=0;i<n_recvs;i++) { 3687 if ((PetscInt)new_local_type_private != *ptr_idxs) { 3688 new_local_type_private = MATAIJ_PRIVATE; 3689 break; 3690 } 3691 ptr_idxs += olengths_idxs[i]; 3692 } 3693 switch (new_local_type_private) { 3694 case MATDENSE_PRIVATE: 3695 if (n_recvs>1) { /* subassembling of dense matrices does not give a dense matrix! */ 3696 new_local_type = MATSEQAIJ; 3697 bs = 1; 3698 } else { /* if I receive only 1 dense matrix */ 3699 new_local_type = MATSEQDENSE; 3700 bs = 1; 3701 } 3702 break; 3703 case MATAIJ_PRIVATE: 3704 new_local_type = MATSEQAIJ; 3705 bs = 1; 3706 break; 3707 case MATBAIJ_PRIVATE: 3708 new_local_type = MATSEQBAIJ; 3709 break; 3710 case MATSBAIJ_PRIVATE: 3711 new_local_type = MATSEQSBAIJ; 3712 break; 3713 default: 3714 SETERRQ2(comm,PETSC_ERR_SUP,"Unsupported private type %d in %s",new_local_type_private,__FUNCT__); 3715 break; 3716 } 3717 } else { /* by default, new_local_type is seqdense */ 3718 new_local_type = MATSEQDENSE; 3719 bs = 1; 3720 } 3721 3722 /* create MATIS object if needed */ 3723 if (reuse == MAT_INITIAL_MATRIX) { 3724 ierr = MatGetSize(mat,&rows,&cols);CHKERRQ(ierr); 3725 ierr = MatCreateIS(comm_n,bs,PETSC_DECIDE,PETSC_DECIDE,rows,cols,l2gmap,mat_n);CHKERRQ(ierr); 3726 } else { 3727 /* it also destroys the local matrices */ 3728 ierr = MatSetLocalToGlobalMapping(*mat_n,l2gmap,l2gmap);CHKERRQ(ierr); 3729 } 3730 ierr = MatISGetLocalMat(*mat_n,&local_mat);CHKERRQ(ierr); 3731 ierr = MatSetType(local_mat,new_local_type);CHKERRQ(ierr); 3732 3733 ierr = MPI_Waitall(n_recvs,recv_req_vals,MPI_STATUSES_IGNORE);CHKERRQ(ierr); 3734 3735 /* Global to local map of received indices */ 3736 ierr = PetscMalloc1(buf_size_idxs,&recv_buffer_idxs_local);CHKERRQ(ierr); /* needed for values insertion */ 3737 ierr = ISGlobalToLocalMappingApply(l2gmap,IS_GTOLM_MASK,buf_size_idxs,recv_buffer_idxs,&i,recv_buffer_idxs_local);CHKERRQ(ierr); 3738 ierr = ISLocalToGlobalMappingDestroy(&l2gmap);CHKERRQ(ierr); 3739 3740 /* restore attributes -> type of incoming data and its size */ 3741 buf_size_idxs = 0; 3742 for (i=0;i<n_recvs;i++) { 3743 recv_buffer_idxs_local[buf_size_idxs] = recv_buffer_idxs[buf_size_idxs]; 3744 recv_buffer_idxs_local[buf_size_idxs+1] = recv_buffer_idxs[buf_size_idxs+1]; 3745 buf_size_idxs += (PetscInt)olengths_idxs[i]; 3746 } 3747 ierr = PetscFree(recv_buffer_idxs);CHKERRQ(ierr); 3748 3749 /* set preallocation */ 3750 ierr = PetscObjectTypeCompare((PetscObject)local_mat,MATSEQDENSE,&newisdense);CHKERRQ(ierr); 3751 if (!newisdense) { 3752 PetscInt *new_local_nnz=0; 3753 3754 ptr_vals = recv_buffer_vals; 3755 ptr_idxs = recv_buffer_idxs_local; 3756 if (n_recvs) { 3757 ierr = PetscCalloc1(new_local_rows,&new_local_nnz);CHKERRQ(ierr); 3758 } 3759 for (i=0;i<n_recvs;i++) { 3760 PetscInt j; 3761 if (*ptr_idxs == (PetscInt)MATDENSE_PRIVATE) { /* preallocation provided for dense case only */ 3762 for (j=0;j<*(ptr_idxs+1);j++) { 3763 new_local_nnz[*(ptr_idxs+2+j)] += *(ptr_idxs+1); 3764 } 3765 } else { 3766 /* TODO */ 3767 } 3768 ptr_idxs += olengths_idxs[i]; 3769 } 3770 if (new_local_nnz) { 3771 for (i=0;i<new_local_rows;i++) new_local_nnz[i] = PetscMin(new_local_nnz[i],new_local_rows); 3772 ierr = MatSeqAIJSetPreallocation(local_mat,0,new_local_nnz);CHKERRQ(ierr); 3773 for (i=0;i<new_local_rows;i++) new_local_nnz[i] /= bs; 3774 ierr = MatSeqBAIJSetPreallocation(local_mat,bs,0,new_local_nnz);CHKERRQ(ierr); 3775 for (i=0;i<new_local_rows;i++) new_local_nnz[i] = PetscMax(new_local_nnz[i]-i,0); 3776 ierr = MatSeqSBAIJSetPreallocation(local_mat,bs,0,new_local_nnz);CHKERRQ(ierr); 3777 } else { 3778 ierr = MatSetUp(local_mat);CHKERRQ(ierr); 3779 } 3780 ierr = PetscFree(new_local_nnz);CHKERRQ(ierr); 3781 } else { 3782 ierr = MatSetUp(local_mat);CHKERRQ(ierr); 3783 } 3784 3785 /* set values */ 3786 ptr_vals = recv_buffer_vals; 3787 ptr_idxs = recv_buffer_idxs_local; 3788 for (i=0;i<n_recvs;i++) { 3789 if (*ptr_idxs == (PetscInt)MATDENSE_PRIVATE) { /* values insertion provided for dense case only */ 3790 ierr = MatSetOption(local_mat,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 3791 ierr = MatSetValues(local_mat,*(ptr_idxs+1),ptr_idxs+2,*(ptr_idxs+1),ptr_idxs+2,ptr_vals,ADD_VALUES);CHKERRQ(ierr); 3792 ierr = MatAssemblyBegin(local_mat,MAT_FLUSH_ASSEMBLY);CHKERRQ(ierr); 3793 ierr = MatAssemblyEnd(local_mat,MAT_FLUSH_ASSEMBLY);CHKERRQ(ierr); 3794 ierr = MatSetOption(local_mat,MAT_ROW_ORIENTED,PETSC_TRUE);CHKERRQ(ierr); 3795 } else { 3796 /* TODO */ 3797 } 3798 ptr_idxs += olengths_idxs[i]; 3799 ptr_vals += olengths_vals[i]; 3800 } 3801 ierr = MatAssemblyBegin(local_mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3802 ierr = MatAssemblyEnd(local_mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3803 ierr = MatAssemblyBegin(*mat_n,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3804 ierr = MatAssemblyEnd(*mat_n,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3805 ierr = PetscFree(recv_buffer_vals);CHKERRQ(ierr); 3806 ierr = PetscFree(recv_buffer_idxs_local);CHKERRQ(ierr); 3807 3808 #if 0 3809 if (!restrict_comm) { /* check */ 3810 Vec lvec,rvec; 3811 PetscReal infty_error; 3812 3813 ierr = MatCreateVecs(mat,&rvec,&lvec);CHKERRQ(ierr); 3814 ierr = VecSetRandom(rvec,NULL);CHKERRQ(ierr); 3815 ierr = MatMult(mat,rvec,lvec);CHKERRQ(ierr); 3816 ierr = VecScale(lvec,-1.0);CHKERRQ(ierr); 3817 ierr = MatMultAdd(*mat_n,rvec,lvec,lvec);CHKERRQ(ierr); 3818 ierr = VecNorm(lvec,NORM_INFINITY,&infty_error);CHKERRQ(ierr); 3819 ierr = PetscPrintf(PetscObjectComm((PetscObject)mat),"Infinity error subassembling %1.6e\n",infty_error); 3820 ierr = VecDestroy(&rvec);CHKERRQ(ierr); 3821 ierr = VecDestroy(&lvec);CHKERRQ(ierr); 3822 } 3823 #endif 3824 3825 /* assemble new additional is (if any) */ 3826 if (nis) { 3827 PetscInt **temp_idxs,*count_is,j,psum; 3828 3829 ierr = MPI_Waitall(n_recvs,recv_req_idxs_is,MPI_STATUSES_IGNORE);CHKERRQ(ierr); 3830 ierr = PetscCalloc1(nis,&count_is);CHKERRQ(ierr); 3831 ptr_idxs = recv_buffer_idxs_is; 3832 psum = 0; 3833 for (i=0;i<n_recvs;i++) { 3834 for (j=0;j<nis;j++) { 3835 PetscInt plen = *(ptr_idxs); /* first element is the local size of IS's indices */ 3836 count_is[j] += plen; /* increment counting of buffer for j-th IS */ 3837 psum += plen; 3838 ptr_idxs += plen+1; /* shift pointer to received data */ 3839 } 3840 } 3841 ierr = PetscMalloc1(nis,&temp_idxs);CHKERRQ(ierr); 3842 ierr = PetscMalloc1(psum,&temp_idxs[0]);CHKERRQ(ierr); 3843 for (i=1;i<nis;i++) { 3844 temp_idxs[i] = temp_idxs[i-1]+count_is[i-1]; 3845 } 3846 ierr = PetscMemzero(count_is,nis*sizeof(PetscInt));CHKERRQ(ierr); 3847 ptr_idxs = recv_buffer_idxs_is; 3848 for (i=0;i<n_recvs;i++) { 3849 for (j=0;j<nis;j++) { 3850 PetscInt plen = *(ptr_idxs); /* first element is the local size of IS's indices */ 3851 ierr = PetscMemcpy(&temp_idxs[j][count_is[j]],ptr_idxs+1,plen*sizeof(PetscInt));CHKERRQ(ierr); 3852 count_is[j] += plen; /* increment starting point of buffer for j-th IS */ 3853 ptr_idxs += plen+1; /* shift pointer to received data */ 3854 } 3855 } 3856 for (i=0;i<nis;i++) { 3857 ierr = ISDestroy(&isarray[i]);CHKERRQ(ierr); 3858 ierr = PetscSortRemoveDupsInt(&count_is[i],temp_idxs[i]);CHKERRQ(ierr);CHKERRQ(ierr); 3859 ierr = ISCreateGeneral(comm_n,count_is[i],temp_idxs[i],PETSC_COPY_VALUES,&isarray[i]);CHKERRQ(ierr); 3860 } 3861 ierr = PetscFree(count_is);CHKERRQ(ierr); 3862 ierr = PetscFree(temp_idxs[0]);CHKERRQ(ierr); 3863 ierr = PetscFree(temp_idxs);CHKERRQ(ierr); 3864 } 3865 /* free workspace */ 3866 ierr = PetscFree(recv_buffer_idxs_is);CHKERRQ(ierr); 3867 ierr = MPI_Waitall(n_sends,send_req_idxs,MPI_STATUSES_IGNORE);CHKERRQ(ierr); 3868 ierr = PetscFree(send_buffer_idxs);CHKERRQ(ierr); 3869 ierr = MPI_Waitall(n_sends,send_req_vals,MPI_STATUSES_IGNORE);CHKERRQ(ierr); 3870 if (isdense) { 3871 ierr = MatISGetLocalMat(mat,&local_mat);CHKERRQ(ierr); 3872 ierr = MatDenseRestoreArray(local_mat,&send_buffer_vals);CHKERRQ(ierr); 3873 } else { 3874 /* ierr = PetscFree(send_buffer_vals);CHKERRQ(ierr); */ 3875 } 3876 if (nis) { 3877 ierr = MPI_Waitall(n_sends,send_req_idxs_is,MPI_STATUSES_IGNORE);CHKERRQ(ierr); 3878 ierr = PetscFree(send_buffer_idxs_is);CHKERRQ(ierr); 3879 } 3880 ierr = PetscFree(recv_req_idxs);CHKERRQ(ierr); 3881 ierr = PetscFree(recv_req_vals);CHKERRQ(ierr); 3882 ierr = PetscFree(recv_req_idxs_is);CHKERRQ(ierr); 3883 ierr = PetscFree(send_req_idxs);CHKERRQ(ierr); 3884 ierr = PetscFree(send_req_vals);CHKERRQ(ierr); 3885 ierr = PetscFree(send_req_idxs_is);CHKERRQ(ierr); 3886 ierr = PetscFree(ilengths_vals);CHKERRQ(ierr); 3887 ierr = PetscFree(ilengths_idxs);CHKERRQ(ierr); 3888 ierr = PetscFree(olengths_vals);CHKERRQ(ierr); 3889 ierr = PetscFree(olengths_idxs);CHKERRQ(ierr); 3890 ierr = PetscFree(onodes);CHKERRQ(ierr); 3891 if (nis) { 3892 ierr = PetscFree(ilengths_idxs_is);CHKERRQ(ierr); 3893 ierr = PetscFree(olengths_idxs_is);CHKERRQ(ierr); 3894 ierr = PetscFree(onodes_is);CHKERRQ(ierr); 3895 } 3896 ierr = PetscSubcommDestroy(&subcomm);CHKERRQ(ierr); 3897 if (destroy_mat) { /* destroy mat is true only if restrict comm is true and process will not partecipate */ 3898 ierr = MatDestroy(mat_n);CHKERRQ(ierr); 3899 for (i=0;i<nis;i++) { 3900 ierr = ISDestroy(&isarray[i]);CHKERRQ(ierr); 3901 } 3902 } 3903 PetscFunctionReturn(0); 3904 } 3905 3906 /* temporary hack into ksp private data structure */ 3907 #include <petsc/private/kspimpl.h> 3908 3909 #undef __FUNCT__ 3910 #define __FUNCT__ "PCBDDCSetUpCoarseSolver" 3911 PetscErrorCode PCBDDCSetUpCoarseSolver(PC pc,PetscScalar* coarse_submat_vals) 3912 { 3913 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 3914 PC_IS *pcis = (PC_IS*)pc->data; 3915 Mat coarse_mat,coarse_mat_is,coarse_submat_dense; 3916 MatNullSpace CoarseNullSpace=NULL; 3917 ISLocalToGlobalMapping coarse_islg; 3918 IS coarse_is,*isarray; 3919 PetscInt i,im_active=-1,active_procs=-1; 3920 PetscInt nis,nisdofs,nisneu; 3921 PC pc_temp; 3922 PCType coarse_pc_type; 3923 KSPType coarse_ksp_type; 3924 PetscBool multilevel_requested,multilevel_allowed; 3925 PetscBool isredundant,isbddc,isnn,coarse_reuse; 3926 Mat t_coarse_mat_is; 3927 PetscInt void_procs,ncoarse_ml,ncoarse_ds,ncoarse; 3928 PetscMPIInt all_procs; 3929 PetscBool csin_ml,csin_ds,csin,csin_type_simple,redist; 3930 PetscBool compute_vecs = PETSC_FALSE; 3931 PetscScalar *array; 3932 PetscErrorCode ierr; 3933 3934 PetscFunctionBegin; 3935 /* Assign global numbering to coarse dofs */ 3936 if (pcbddc->new_primal_space || pcbddc->coarse_size == -1) { /* a new primal space is present or it is the first initialization, so recompute global numbering */ 3937 PetscInt ocoarse_size; 3938 compute_vecs = PETSC_TRUE; 3939 ocoarse_size = pcbddc->coarse_size; 3940 ierr = PetscFree(pcbddc->global_primal_indices);CHKERRQ(ierr); 3941 ierr = PCBDDCComputePrimalNumbering(pc,&pcbddc->coarse_size,&pcbddc->global_primal_indices);CHKERRQ(ierr); 3942 /* see if we can avoid some work */ 3943 if (pcbddc->coarse_ksp) { /* coarse ksp has already been created */ 3944 if (ocoarse_size != pcbddc->coarse_size) { /* ...but with different size, so reset it and set reuse flag to false */ 3945 ierr = KSPReset(pcbddc->coarse_ksp);CHKERRQ(ierr); 3946 coarse_reuse = PETSC_FALSE; 3947 } else { /* we can safely reuse already computed coarse matrix */ 3948 coarse_reuse = PETSC_TRUE; 3949 } 3950 } else { /* there's no coarse ksp, so we need to create the coarse matrix too */ 3951 coarse_reuse = PETSC_FALSE; 3952 } 3953 /* reset any subassembling information */ 3954 ierr = ISDestroy(&pcbddc->coarse_subassembling);CHKERRQ(ierr); 3955 ierr = ISDestroy(&pcbddc->coarse_subassembling_init);CHKERRQ(ierr); 3956 } else { /* primal space is unchanged, so we can reuse coarse matrix */ 3957 coarse_reuse = PETSC_TRUE; 3958 } 3959 3960 /* count "active" (i.e. with positive local size) and "void" processes */ 3961 im_active = !!(pcis->n); 3962 ierr = MPI_Allreduce(&im_active,&active_procs,1,MPIU_INT,MPI_SUM,PetscObjectComm((PetscObject)pc));CHKERRQ(ierr); 3963 ierr = MPI_Comm_size(PetscObjectComm((PetscObject)pc),&all_procs);CHKERRQ(ierr); 3964 void_procs = all_procs-active_procs; 3965 csin_type_simple = PETSC_TRUE; 3966 redist = PETSC_FALSE; 3967 if (pcbddc->current_level && void_procs) { 3968 csin_ml = PETSC_TRUE; 3969 ncoarse_ml = void_procs; 3970 /* it has no sense to redistribute on a set of processors larger than the number of active processes */ 3971 if (pcbddc->redistribute_coarse > 0 && pcbddc->redistribute_coarse < active_procs) { 3972 csin_ds = PETSC_TRUE; 3973 ncoarse_ds = pcbddc->redistribute_coarse; 3974 redist = PETSC_TRUE; 3975 } else { 3976 csin_ds = PETSC_TRUE; 3977 ncoarse_ds = active_procs; 3978 redist = PETSC_TRUE; 3979 } 3980 } else { 3981 csin_ml = PETSC_FALSE; 3982 ncoarse_ml = all_procs; 3983 if (void_procs) { 3984 csin_ds = PETSC_TRUE; 3985 ncoarse_ds = void_procs; 3986 csin_type_simple = PETSC_FALSE; 3987 } else { 3988 if (pcbddc->redistribute_coarse > 0 && pcbddc->redistribute_coarse < all_procs) { 3989 csin_ds = PETSC_TRUE; 3990 ncoarse_ds = pcbddc->redistribute_coarse; 3991 redist = PETSC_TRUE; 3992 } else { 3993 csin_ds = PETSC_FALSE; 3994 ncoarse_ds = all_procs; 3995 } 3996 } 3997 } 3998 3999 /* 4000 test if we can go multilevel: three conditions must be satisfied: 4001 - we have not exceeded the number of levels requested 4002 - we can actually subassemble the active processes 4003 - we can find a suitable number of MPI processes where we can place the subassembled problem 4004 */ 4005 multilevel_allowed = PETSC_FALSE; 4006 multilevel_requested = PETSC_FALSE; 4007 if (pcbddc->current_level < pcbddc->max_levels) { 4008 multilevel_requested = PETSC_TRUE; 4009 if (active_procs/pcbddc->coarsening_ratio < 2 || ncoarse_ml/pcbddc->coarsening_ratio < 2) { 4010 multilevel_allowed = PETSC_FALSE; 4011 } else { 4012 multilevel_allowed = PETSC_TRUE; 4013 } 4014 } 4015 /* determine number of process partecipating to coarse solver */ 4016 if (multilevel_allowed) { 4017 ncoarse = ncoarse_ml; 4018 csin = csin_ml; 4019 redist = PETSC_FALSE; 4020 } else { 4021 ncoarse = ncoarse_ds; 4022 csin = csin_ds; 4023 } 4024 4025 /* creates temporary l2gmap and IS for coarse indexes */ 4026 ierr = ISCreateGeneral(PetscObjectComm((PetscObject)pc),pcbddc->local_primal_size,pcbddc->global_primal_indices,PETSC_COPY_VALUES,&coarse_is);CHKERRQ(ierr); 4027 ierr = ISLocalToGlobalMappingCreateIS(coarse_is,&coarse_islg);CHKERRQ(ierr); 4028 4029 /* creates temporary MATIS object for coarse matrix */ 4030 ierr = MatCreateSeqDense(PETSC_COMM_SELF,pcbddc->local_primal_size,pcbddc->local_primal_size,NULL,&coarse_submat_dense);CHKERRQ(ierr); 4031 ierr = MatDenseGetArray(coarse_submat_dense,&array);CHKERRQ(ierr); 4032 ierr = PetscMemcpy(array,coarse_submat_vals,sizeof(*coarse_submat_vals)*pcbddc->local_primal_size*pcbddc->local_primal_size);CHKERRQ(ierr); 4033 ierr = MatDenseRestoreArray(coarse_submat_dense,&array);CHKERRQ(ierr); 4034 #if 0 4035 { 4036 PetscViewer viewer; 4037 char filename[256]; 4038 sprintf(filename,"local_coarse_mat%d.m",PetscGlobalRank); 4039 ierr = PetscViewerASCIIOpen(PETSC_COMM_SELF,filename,&viewer);CHKERRQ(ierr); 4040 ierr = PetscViewerSetFormat(viewer,PETSC_VIEWER_ASCII_MATLAB);CHKERRQ(ierr); 4041 ierr = MatView(coarse_submat_dense,viewer);CHKERRQ(ierr); 4042 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 4043 } 4044 #endif 4045 ierr = MatCreateIS(PetscObjectComm((PetscObject)pc),1,PETSC_DECIDE,PETSC_DECIDE,pcbddc->coarse_size,pcbddc->coarse_size,coarse_islg,&t_coarse_mat_is);CHKERRQ(ierr); 4046 ierr = MatISSetLocalMat(t_coarse_mat_is,coarse_submat_dense);CHKERRQ(ierr); 4047 ierr = MatAssemblyBegin(t_coarse_mat_is,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 4048 ierr = MatAssemblyEnd(t_coarse_mat_is,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 4049 ierr = MatDestroy(&coarse_submat_dense);CHKERRQ(ierr); 4050 4051 /* compute dofs splitting and neumann boundaries for coarse dofs */ 4052 if (multilevel_allowed && (pcbddc->n_ISForDofsLocal || pcbddc->NeumannBoundariesLocal) ) { /* protects from unneded computations */ 4053 PetscInt *tidxs,*tidxs2,nout,tsize,i; 4054 const PetscInt *idxs; 4055 ISLocalToGlobalMapping tmap; 4056 4057 /* create map between primal indices (in local representative ordering) and local primal numbering */ 4058 ierr = ISLocalToGlobalMappingCreate(PETSC_COMM_SELF,1,pcbddc->local_primal_size,pcbddc->primal_indices_local_idxs,PETSC_COPY_VALUES,&tmap);CHKERRQ(ierr); 4059 /* allocate space for temporary storage */ 4060 ierr = PetscMalloc1(pcbddc->local_primal_size,&tidxs);CHKERRQ(ierr); 4061 ierr = PetscMalloc1(pcbddc->local_primal_size,&tidxs2);CHKERRQ(ierr); 4062 /* allocate for IS array */ 4063 nisdofs = pcbddc->n_ISForDofsLocal; 4064 nisneu = !!pcbddc->NeumannBoundariesLocal; 4065 nis = nisdofs + nisneu; 4066 ierr = PetscMalloc1(nis,&isarray);CHKERRQ(ierr); 4067 /* dofs splitting */ 4068 for (i=0;i<nisdofs;i++) { 4069 /* ierr = ISView(pcbddc->ISForDofsLocal[i],0);CHKERRQ(ierr); */ 4070 ierr = ISGetLocalSize(pcbddc->ISForDofsLocal[i],&tsize);CHKERRQ(ierr); 4071 ierr = ISGetIndices(pcbddc->ISForDofsLocal[i],&idxs);CHKERRQ(ierr); 4072 ierr = ISGlobalToLocalMappingApply(tmap,IS_GTOLM_DROP,tsize,idxs,&nout,tidxs);CHKERRQ(ierr); 4073 ierr = ISRestoreIndices(pcbddc->ISForDofsLocal[i],&idxs);CHKERRQ(ierr); 4074 ierr = ISLocalToGlobalMappingApply(coarse_islg,nout,tidxs,tidxs2);CHKERRQ(ierr); 4075 ierr = ISCreateGeneral(PetscObjectComm((PetscObject)pcbddc->ISForDofsLocal[i]),nout,tidxs2,PETSC_COPY_VALUES,&isarray[i]);CHKERRQ(ierr); 4076 /* ierr = ISView(isarray[i],0);CHKERRQ(ierr); */ 4077 } 4078 /* neumann boundaries */ 4079 if (pcbddc->NeumannBoundariesLocal) { 4080 /* ierr = ISView(pcbddc->NeumannBoundariesLocal,0);CHKERRQ(ierr); */ 4081 ierr = ISGetLocalSize(pcbddc->NeumannBoundariesLocal,&tsize);CHKERRQ(ierr); 4082 ierr = ISGetIndices(pcbddc->NeumannBoundariesLocal,&idxs);CHKERRQ(ierr); 4083 ierr = ISGlobalToLocalMappingApply(tmap,IS_GTOLM_DROP,tsize,idxs,&nout,tidxs);CHKERRQ(ierr); 4084 ierr = ISRestoreIndices(pcbddc->NeumannBoundariesLocal,&idxs);CHKERRQ(ierr); 4085 ierr = ISLocalToGlobalMappingApply(coarse_islg,nout,tidxs,tidxs2);CHKERRQ(ierr); 4086 ierr = ISCreateGeneral(PetscObjectComm((PetscObject)pcbddc->NeumannBoundariesLocal),nout,tidxs2,PETSC_COPY_VALUES,&isarray[nisdofs]);CHKERRQ(ierr); 4087 /* ierr = ISView(isarray[nisdofs],0);CHKERRQ(ierr); */ 4088 } 4089 /* free memory */ 4090 ierr = PetscFree(tidxs);CHKERRQ(ierr); 4091 ierr = PetscFree(tidxs2);CHKERRQ(ierr); 4092 ierr = ISLocalToGlobalMappingDestroy(&tmap);CHKERRQ(ierr); 4093 } else { 4094 nis = 0; 4095 nisdofs = 0; 4096 nisneu = 0; 4097 isarray = NULL; 4098 } 4099 /* destroy no longer needed map */ 4100 ierr = ISLocalToGlobalMappingDestroy(&coarse_islg);CHKERRQ(ierr); 4101 4102 /* restrict on coarse candidates (if needed) */ 4103 coarse_mat_is = NULL; 4104 if (csin) { 4105 if (!pcbddc->coarse_subassembling_init ) { /* creates subassembling init pattern if not present */ 4106 if (redist) { 4107 PetscMPIInt rank; 4108 PetscInt spc,n_spc_p1,dest[1],destsize; 4109 4110 ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)pc),&rank);CHKERRQ(ierr); 4111 spc = active_procs/ncoarse; 4112 n_spc_p1 = active_procs%ncoarse; 4113 if (im_active) { 4114 destsize = 1; 4115 if (rank > n_spc_p1*(spc+1)-1) { 4116 dest[0] = n_spc_p1+(rank-(n_spc_p1*(spc+1)))/spc; 4117 } else { 4118 dest[0] = rank/(spc+1); 4119 } 4120 } else { 4121 destsize = 0; 4122 } 4123 ierr = ISCreateGeneral(PetscObjectComm((PetscObject)pc),destsize,dest,PETSC_COPY_VALUES,&pcbddc->coarse_subassembling_init);CHKERRQ(ierr); 4124 } else if (csin_type_simple) { 4125 PetscMPIInt rank; 4126 PetscInt issize,isidx; 4127 4128 ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)pc),&rank);CHKERRQ(ierr); 4129 if (im_active) { 4130 issize = 1; 4131 isidx = (PetscInt)rank; 4132 } else { 4133 issize = 0; 4134 isidx = -1; 4135 } 4136 ierr = ISCreateGeneral(PetscObjectComm((PetscObject)pc),issize,&isidx,PETSC_COPY_VALUES,&pcbddc->coarse_subassembling_init);CHKERRQ(ierr); 4137 } else { /* get a suitable subassembling pattern from MATIS code */ 4138 ierr = MatISGetSubassemblingPattern(t_coarse_mat_is,ncoarse,PETSC_TRUE,&pcbddc->coarse_subassembling_init);CHKERRQ(ierr); 4139 } 4140 4141 /* we need to shift on coarse candidates either if we are not redistributing or we are redistributing and we have enough void processes */ 4142 if (!redist || ncoarse <= void_procs) { 4143 PetscInt ncoarse_cand,tissize,*nisindices; 4144 PetscInt *coarse_candidates; 4145 const PetscInt* tisindices; 4146 4147 /* get coarse candidates' ranks in pc communicator */ 4148 ierr = PetscMalloc1(all_procs,&coarse_candidates);CHKERRQ(ierr); 4149 ierr = MPI_Allgather(&im_active,1,MPIU_INT,coarse_candidates,1,MPIU_INT,PetscObjectComm((PetscObject)pc));CHKERRQ(ierr); 4150 for (i=0,ncoarse_cand=0;i<all_procs;i++) { 4151 if (!coarse_candidates[i]) { 4152 coarse_candidates[ncoarse_cand++]=i; 4153 } 4154 } 4155 if (ncoarse_cand < ncoarse) SETERRQ2(PetscObjectComm((PetscObject)pc),PETSC_ERR_PLIB,"This should not happen! %d < %d",ncoarse_cand,ncoarse); 4156 4157 4158 if (pcbddc->dbg_flag) { 4159 ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"--------------------------------------------------\n");CHKERRQ(ierr); 4160 ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"Subassembling pattern init (before shift)\n");CHKERRQ(ierr); 4161 ierr = ISView(pcbddc->coarse_subassembling_init,pcbddc->dbg_viewer);CHKERRQ(ierr); 4162 ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"Coarse candidates\n");CHKERRQ(ierr); 4163 for (i=0;i<ncoarse_cand;i++) { 4164 ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"%d ",coarse_candidates[i]);CHKERRQ(ierr); 4165 } 4166 ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"\n");CHKERRQ(ierr); 4167 ierr = PetscViewerFlush(pcbddc->dbg_viewer);CHKERRQ(ierr); 4168 } 4169 /* shift the pattern on coarse candidates */ 4170 ierr = ISGetLocalSize(pcbddc->coarse_subassembling_init,&tissize);CHKERRQ(ierr); 4171 ierr = ISGetIndices(pcbddc->coarse_subassembling_init,&tisindices);CHKERRQ(ierr); 4172 ierr = PetscMalloc1(tissize,&nisindices);CHKERRQ(ierr); 4173 for (i=0;i<tissize;i++) nisindices[i] = coarse_candidates[tisindices[i]]; 4174 ierr = ISRestoreIndices(pcbddc->coarse_subassembling_init,&tisindices);CHKERRQ(ierr); 4175 ierr = ISGeneralSetIndices(pcbddc->coarse_subassembling_init,tissize,nisindices,PETSC_OWN_POINTER);CHKERRQ(ierr); 4176 ierr = PetscFree(coarse_candidates);CHKERRQ(ierr); 4177 } 4178 if (pcbddc->dbg_flag) { 4179 ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"--------------------------------------------------\n");CHKERRQ(ierr); 4180 ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"Subassembling pattern init\n");CHKERRQ(ierr); 4181 ierr = ISView(pcbddc->coarse_subassembling_init,pcbddc->dbg_viewer);CHKERRQ(ierr); 4182 ierr = PetscViewerFlush(pcbddc->dbg_viewer);CHKERRQ(ierr); 4183 } 4184 } 4185 /* get temporary coarse mat in IS format restricted on coarse procs (plus additional index sets of isarray) */ 4186 ierr = MatISSubassemble(t_coarse_mat_is,pcbddc->coarse_subassembling_init,0,PETSC_TRUE,MAT_INITIAL_MATRIX,&coarse_mat_is,nis,isarray);CHKERRQ(ierr); 4187 } else { 4188 if (pcbddc->dbg_flag) { 4189 ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"--------------------------------------------------\n");CHKERRQ(ierr); 4190 ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"Subassembling pattern init not needed\n");CHKERRQ(ierr); 4191 ierr = PetscViewerFlush(pcbddc->dbg_viewer);CHKERRQ(ierr); 4192 } 4193 ierr = PetscObjectReference((PetscObject)t_coarse_mat_is);CHKERRQ(ierr); 4194 coarse_mat_is = t_coarse_mat_is; 4195 } 4196 4197 /* create local to global scatters for coarse problem */ 4198 if (compute_vecs) { 4199 PetscInt lrows; 4200 ierr = VecDestroy(&pcbddc->coarse_vec);CHKERRQ(ierr); 4201 if (coarse_mat_is) { 4202 ierr = MatGetLocalSize(coarse_mat_is,&lrows,NULL);CHKERRQ(ierr); 4203 } else { 4204 lrows = 0; 4205 } 4206 ierr = VecCreate(PetscObjectComm((PetscObject)pc),&pcbddc->coarse_vec);CHKERRQ(ierr); 4207 ierr = VecSetSizes(pcbddc->coarse_vec,lrows,PETSC_DECIDE);CHKERRQ(ierr); 4208 ierr = VecSetType(pcbddc->coarse_vec,VECSTANDARD);CHKERRQ(ierr); 4209 ierr = VecScatterDestroy(&pcbddc->coarse_loc_to_glob);CHKERRQ(ierr); 4210 ierr = VecScatterCreate(pcbddc->vec1_P,NULL,pcbddc->coarse_vec,coarse_is,&pcbddc->coarse_loc_to_glob);CHKERRQ(ierr); 4211 } 4212 ierr = ISDestroy(&coarse_is);CHKERRQ(ierr); 4213 ierr = MatDestroy(&t_coarse_mat_is);CHKERRQ(ierr); 4214 4215 /* set defaults for coarse KSP and PC */ 4216 if (multilevel_allowed) { 4217 coarse_ksp_type = KSPRICHARDSON; 4218 coarse_pc_type = PCBDDC; 4219 } else { 4220 coarse_ksp_type = KSPPREONLY; 4221 coarse_pc_type = PCREDUNDANT; 4222 } 4223 4224 /* print some info if requested */ 4225 if (pcbddc->dbg_flag) { 4226 if (!multilevel_allowed) { 4227 ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"--------------------------------------------------\n");CHKERRQ(ierr); 4228 if (multilevel_requested) { 4229 ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"Not enough active processes on level %d (active processes %d, coarsening ratio %d)\n",pcbddc->current_level,active_procs,pcbddc->coarsening_ratio);CHKERRQ(ierr); 4230 } else if (pcbddc->max_levels) { 4231 ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"Maximum number of requested levels reached (%d)\n",pcbddc->max_levels);CHKERRQ(ierr); 4232 } 4233 ierr = PetscViewerFlush(pcbddc->dbg_viewer);CHKERRQ(ierr); 4234 } 4235 } 4236 4237 /* create the coarse KSP object only once with defaults */ 4238 if (coarse_mat_is) { 4239 MatReuse coarse_mat_reuse; 4240 PetscViewer dbg_viewer = NULL; 4241 if (pcbddc->dbg_flag) { 4242 dbg_viewer = PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)coarse_mat_is)); 4243 ierr = PetscViewerASCIIAddTab(dbg_viewer,2*pcbddc->current_level);CHKERRQ(ierr); 4244 } 4245 if (!pcbddc->coarse_ksp) { 4246 char prefix[256],str_level[16]; 4247 size_t len; 4248 ierr = KSPCreate(PetscObjectComm((PetscObject)coarse_mat_is),&pcbddc->coarse_ksp);CHKERRQ(ierr); 4249 ierr = PetscObjectIncrementTabLevel((PetscObject)pcbddc->coarse_ksp,(PetscObject)pc,1);CHKERRQ(ierr); 4250 ierr = KSPSetTolerances(pcbddc->coarse_ksp,PETSC_DEFAULT,PETSC_DEFAULT,PETSC_DEFAULT,1);CHKERRQ(ierr); 4251 ierr = KSPSetOperators(pcbddc->coarse_ksp,coarse_mat_is,coarse_mat_is);CHKERRQ(ierr); 4252 ierr = KSPSetType(pcbddc->coarse_ksp,coarse_ksp_type);CHKERRQ(ierr); 4253 ierr = KSPSetNormType(pcbddc->coarse_ksp,KSP_NORM_NONE);CHKERRQ(ierr); 4254 ierr = KSPGetPC(pcbddc->coarse_ksp,&pc_temp);CHKERRQ(ierr); 4255 ierr = PCSetType(pc_temp,coarse_pc_type);CHKERRQ(ierr); 4256 ierr = PCFactorSetReuseFill(pc_temp,PETSC_TRUE);CHKERRQ(ierr); 4257 /* prefix */ 4258 ierr = PetscStrcpy(prefix,"");CHKERRQ(ierr); 4259 ierr = PetscStrcpy(str_level,"");CHKERRQ(ierr); 4260 if (!pcbddc->current_level) { 4261 ierr = PetscStrcpy(prefix,((PetscObject)pc)->prefix);CHKERRQ(ierr); 4262 ierr = PetscStrcat(prefix,"pc_bddc_coarse_");CHKERRQ(ierr); 4263 } else { 4264 ierr = PetscStrlen(((PetscObject)pc)->prefix,&len);CHKERRQ(ierr); 4265 if (pcbddc->current_level>1) len -= 3; /* remove "lX_" with X level number */ 4266 if (pcbddc->current_level>10) len -= 1; /* remove another char from level number */ 4267 ierr = PetscStrncpy(prefix,((PetscObject)pc)->prefix,len+1);CHKERRQ(ierr); 4268 sprintf(str_level,"l%d_",(int)(pcbddc->current_level)); 4269 ierr = PetscStrcat(prefix,str_level);CHKERRQ(ierr); 4270 } 4271 ierr = KSPSetOptionsPrefix(pcbddc->coarse_ksp,prefix);CHKERRQ(ierr); 4272 /* propagate BDDC info to the next level (these are dummy calls if pc_temp is not of type PCBDDC) */ 4273 ierr = PCBDDCSetLevel(pc_temp,pcbddc->current_level+1);CHKERRQ(ierr); 4274 ierr = PCBDDCSetCoarseningRatio(pc_temp,pcbddc->coarsening_ratio);CHKERRQ(ierr); 4275 ierr = PCBDDCSetLevels(pc_temp,pcbddc->max_levels);CHKERRQ(ierr); 4276 /* allow user customization */ 4277 ierr = KSPSetFromOptions(pcbddc->coarse_ksp);CHKERRQ(ierr); 4278 } 4279 /* propagate BDDC info to the next level (these are dummy calls if pc_temp is not of type PCBDDC) */ 4280 if (nisdofs) { 4281 ierr = PCBDDCSetDofsSplitting(pc_temp,nisdofs,isarray);CHKERRQ(ierr); 4282 for (i=0;i<nisdofs;i++) { 4283 ierr = ISDestroy(&isarray[i]);CHKERRQ(ierr); 4284 } 4285 } 4286 if (nisneu) { 4287 ierr = PCBDDCSetNeumannBoundaries(pc_temp,isarray[nisdofs]);CHKERRQ(ierr); 4288 ierr = ISDestroy(&isarray[nisdofs]);CHKERRQ(ierr); 4289 } 4290 4291 /* get some info after set from options */ 4292 ierr = KSPGetPC(pcbddc->coarse_ksp,&pc_temp);CHKERRQ(ierr); 4293 ierr = PetscObjectTypeCompare((PetscObject)pc_temp,PCNN,&isnn);CHKERRQ(ierr); 4294 ierr = PetscObjectTypeCompare((PetscObject)pc_temp,PCBDDC,&isbddc);CHKERRQ(ierr); 4295 ierr = PetscObjectTypeCompare((PetscObject)pc_temp,PCREDUNDANT,&isredundant);CHKERRQ(ierr); 4296 if (isbddc && !multilevel_allowed) { /* multilevel can only be requested via pc_bddc_set_levels */ 4297 ierr = PCSetType(pc_temp,coarse_pc_type);CHKERRQ(ierr); 4298 isbddc = PETSC_FALSE; 4299 } 4300 if (isredundant) { 4301 KSP inner_ksp; 4302 PC inner_pc; 4303 ierr = PCRedundantGetKSP(pc_temp,&inner_ksp);CHKERRQ(ierr); 4304 ierr = KSPGetPC(inner_ksp,&inner_pc);CHKERRQ(ierr); 4305 ierr = PCFactorSetReuseFill(inner_pc,PETSC_TRUE);CHKERRQ(ierr); 4306 } 4307 4308 /* assemble coarse matrix */ 4309 if (coarse_reuse) { 4310 ierr = KSPGetOperators(pcbddc->coarse_ksp,&coarse_mat,NULL);CHKERRQ(ierr); 4311 ierr = PetscObjectReference((PetscObject)coarse_mat);CHKERRQ(ierr); 4312 coarse_mat_reuse = MAT_REUSE_MATRIX; 4313 } else { 4314 coarse_mat_reuse = MAT_INITIAL_MATRIX; 4315 } 4316 if (isbddc || isnn) { 4317 if (pcbddc->coarsening_ratio > 1) { 4318 if (!pcbddc->coarse_subassembling) { /* subassembling info is not present */ 4319 ierr = MatISGetSubassemblingPattern(coarse_mat_is,active_procs/pcbddc->coarsening_ratio,PETSC_TRUE,&pcbddc->coarse_subassembling);CHKERRQ(ierr); 4320 if (pcbddc->dbg_flag) { 4321 ierr = PetscViewerASCIIPrintf(dbg_viewer,"--------------------------------------------------\n");CHKERRQ(ierr); 4322 ierr = PetscViewerASCIIPrintf(dbg_viewer,"Subassembling pattern\n");CHKERRQ(ierr); 4323 ierr = ISView(pcbddc->coarse_subassembling,dbg_viewer);CHKERRQ(ierr); 4324 ierr = PetscViewerFlush(dbg_viewer);CHKERRQ(ierr); 4325 } 4326 } 4327 ierr = MatISSubassemble(coarse_mat_is,pcbddc->coarse_subassembling,0,PETSC_FALSE,coarse_mat_reuse,&coarse_mat,0,NULL);CHKERRQ(ierr); 4328 } else { 4329 ierr = PetscObjectReference((PetscObject)coarse_mat_is);CHKERRQ(ierr); 4330 coarse_mat = coarse_mat_is; 4331 } 4332 } else { 4333 ierr = MatISGetMPIXAIJ(coarse_mat_is,coarse_mat_reuse,&coarse_mat);CHKERRQ(ierr); 4334 } 4335 ierr = MatDestroy(&coarse_mat_is);CHKERRQ(ierr); 4336 4337 /* propagate symmetry info to coarse matrix */ 4338 ierr = MatSetOption(coarse_mat,MAT_SYMMETRIC,pcbddc->issym);CHKERRQ(ierr); 4339 ierr = MatSetOption(coarse_mat,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 4340 4341 /* set operators */ 4342 ierr = KSPSetOperators(pcbddc->coarse_ksp,coarse_mat,coarse_mat);CHKERRQ(ierr); 4343 if (pcbddc->dbg_flag) { 4344 ierr = PetscViewerASCIISubtractTab(dbg_viewer,2*pcbddc->current_level);CHKERRQ(ierr); 4345 } 4346 } else { /* processes non partecipating to coarse solver (if any) */ 4347 coarse_mat = 0; 4348 } 4349 ierr = PetscFree(isarray);CHKERRQ(ierr); 4350 #if 0 4351 { 4352 PetscViewer viewer; 4353 char filename[256]; 4354 sprintf(filename,"coarse_mat.m"); 4355 ierr = PetscViewerASCIIOpen(PETSC_COMM_WORLD,filename,&viewer);CHKERRQ(ierr); 4356 ierr = PetscViewerSetFormat(viewer,PETSC_VIEWER_ASCII_MATLAB);CHKERRQ(ierr); 4357 ierr = MatView(coarse_mat,viewer);CHKERRQ(ierr); 4358 ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 4359 } 4360 #endif 4361 4362 /* Compute coarse null space (special handling by BDDC only) */ 4363 if (pcbddc->NullSpace) { 4364 ierr = PCBDDCNullSpaceAssembleCoarse(pc,coarse_mat,&CoarseNullSpace);CHKERRQ(ierr); 4365 } 4366 4367 if (pcbddc->coarse_ksp) { 4368 Vec crhs,csol; 4369 PetscBool ispreonly; 4370 if (CoarseNullSpace) { 4371 if (isbddc) { 4372 ierr = PCBDDCSetNullSpace(pc_temp,CoarseNullSpace);CHKERRQ(ierr); 4373 } else { 4374 ierr = KSPSetNullSpace(pcbddc->coarse_ksp,CoarseNullSpace);CHKERRQ(ierr); 4375 } 4376 } 4377 /* setup coarse ksp */ 4378 ierr = KSPSetUp(pcbddc->coarse_ksp);CHKERRQ(ierr); 4379 ierr = KSPGetSolution(pcbddc->coarse_ksp,&csol);CHKERRQ(ierr); 4380 ierr = KSPGetRhs(pcbddc->coarse_ksp,&crhs);CHKERRQ(ierr); 4381 /* hack */ 4382 if (!csol) { 4383 ierr = MatCreateVecs(coarse_mat,&((pcbddc->coarse_ksp)->vec_sol),NULL);CHKERRQ(ierr); 4384 } 4385 if (!crhs) { 4386 ierr = MatCreateVecs(coarse_mat,NULL,&((pcbddc->coarse_ksp)->vec_rhs));CHKERRQ(ierr); 4387 } 4388 /* Check coarse problem if in debug mode or if solving with an iterative method */ 4389 ierr = PetscObjectTypeCompare((PetscObject)pcbddc->coarse_ksp,KSPPREONLY,&ispreonly);CHKERRQ(ierr); 4390 if (pcbddc->dbg_flag || (!ispreonly && pcbddc->use_coarse_estimates) ) { 4391 KSP check_ksp; 4392 KSPType check_ksp_type; 4393 PC check_pc; 4394 Vec check_vec,coarse_vec; 4395 PetscReal abs_infty_error,infty_error,lambda_min=1.0,lambda_max=1.0; 4396 PetscInt its; 4397 PetscBool compute_eigs; 4398 PetscReal *eigs_r,*eigs_c; 4399 PetscInt neigs; 4400 const char *prefix; 4401 4402 /* Create ksp object suitable for estimation of extreme eigenvalues */ 4403 ierr = KSPCreate(PetscObjectComm((PetscObject)pcbddc->coarse_ksp),&check_ksp);CHKERRQ(ierr); 4404 ierr = KSPSetOperators(check_ksp,coarse_mat,coarse_mat);CHKERRQ(ierr); 4405 ierr = KSPSetTolerances(check_ksp,1.e-12,1.e-12,PETSC_DEFAULT,pcbddc->coarse_size);CHKERRQ(ierr); 4406 if (ispreonly) { 4407 check_ksp_type = KSPPREONLY; 4408 compute_eigs = PETSC_FALSE; 4409 } else { 4410 check_ksp_type = KSPGMRES; 4411 compute_eigs = PETSC_TRUE; 4412 } 4413 ierr = KSPSetType(check_ksp,check_ksp_type);CHKERRQ(ierr); 4414 ierr = KSPSetComputeSingularValues(check_ksp,compute_eigs);CHKERRQ(ierr); 4415 ierr = KSPSetComputeEigenvalues(check_ksp,compute_eigs);CHKERRQ(ierr); 4416 ierr = KSPGMRESSetRestart(check_ksp,pcbddc->coarse_size+1);CHKERRQ(ierr); 4417 ierr = KSPGetOptionsPrefix(pcbddc->coarse_ksp,&prefix);CHKERRQ(ierr); 4418 ierr = KSPSetOptionsPrefix(check_ksp,prefix);CHKERRQ(ierr); 4419 ierr = KSPAppendOptionsPrefix(check_ksp,"check_");CHKERRQ(ierr); 4420 ierr = KSPSetFromOptions(check_ksp);CHKERRQ(ierr); 4421 ierr = KSPSetUp(check_ksp);CHKERRQ(ierr); 4422 ierr = KSPGetPC(pcbddc->coarse_ksp,&check_pc);CHKERRQ(ierr); 4423 ierr = KSPSetPC(check_ksp,check_pc);CHKERRQ(ierr); 4424 /* create random vec */ 4425 ierr = KSPGetSolution(pcbddc->coarse_ksp,&coarse_vec);CHKERRQ(ierr); 4426 ierr = VecDuplicate(coarse_vec,&check_vec);CHKERRQ(ierr); 4427 ierr = VecSetRandom(check_vec,NULL);CHKERRQ(ierr); 4428 if (CoarseNullSpace) { 4429 ierr = MatNullSpaceRemove(CoarseNullSpace,check_vec);CHKERRQ(ierr); 4430 } 4431 ierr = MatMult(coarse_mat,check_vec,coarse_vec);CHKERRQ(ierr); 4432 /* solve coarse problem */ 4433 ierr = KSPSolve(check_ksp,coarse_vec,coarse_vec);CHKERRQ(ierr); 4434 if (CoarseNullSpace) { 4435 ierr = MatNullSpaceRemove(CoarseNullSpace,coarse_vec);CHKERRQ(ierr); 4436 } 4437 /* set eigenvalue estimation if preonly has not been requested */ 4438 if (compute_eigs) { 4439 ierr = PetscMalloc1(pcbddc->coarse_size+1,&eigs_r);CHKERRQ(ierr); 4440 ierr = PetscMalloc1(pcbddc->coarse_size+1,&eigs_c);CHKERRQ(ierr); 4441 ierr = KSPComputeEigenvalues(check_ksp,pcbddc->coarse_size+1,eigs_r,eigs_c,&neigs);CHKERRQ(ierr); 4442 lambda_max = eigs_r[neigs-1]; 4443 lambda_min = eigs_r[0]; 4444 if (pcbddc->use_coarse_estimates) { 4445 if (lambda_max>lambda_min) { 4446 ierr = KSPChebyshevSetEigenvalues(pcbddc->coarse_ksp,lambda_max,lambda_min);CHKERRQ(ierr); 4447 ierr = KSPRichardsonSetScale(pcbddc->coarse_ksp,2.0/(lambda_max+lambda_min));CHKERRQ(ierr); 4448 } 4449 } 4450 } 4451 4452 /* check coarse problem residual error */ 4453 if (pcbddc->dbg_flag) { 4454 PetscViewer dbg_viewer = PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)pcbddc->coarse_ksp)); 4455 ierr = PetscViewerASCIIAddTab(dbg_viewer,2*(pcbddc->current_level+1));CHKERRQ(ierr); 4456 ierr = VecAXPY(check_vec,-1.0,coarse_vec);CHKERRQ(ierr); 4457 ierr = VecNorm(check_vec,NORM_INFINITY,&infty_error);CHKERRQ(ierr); 4458 ierr = MatMult(coarse_mat,check_vec,coarse_vec);CHKERRQ(ierr); 4459 ierr = VecNorm(coarse_vec,NORM_INFINITY,&abs_infty_error);CHKERRQ(ierr); 4460 ierr = VecDestroy(&check_vec);CHKERRQ(ierr); 4461 ierr = PetscViewerASCIIPrintf(dbg_viewer,"Coarse problem details (use estimates %d)\n",pcbddc->use_coarse_estimates);CHKERRQ(ierr); 4462 ierr = PetscObjectPrintClassNamePrefixType((PetscObject)(pcbddc->coarse_ksp),dbg_viewer);CHKERRQ(ierr); 4463 ierr = PetscObjectPrintClassNamePrefixType((PetscObject)(check_pc),dbg_viewer);CHKERRQ(ierr); 4464 ierr = PetscViewerASCIIPrintf(dbg_viewer,"Coarse problem exact infty_error : %1.6e\n",infty_error);CHKERRQ(ierr); 4465 ierr = PetscViewerASCIIPrintf(dbg_viewer,"Coarse problem residual infty_error: %1.6e\n",abs_infty_error);CHKERRQ(ierr); 4466 if (compute_eigs) { 4467 PetscReal lambda_max_s,lambda_min_s; 4468 ierr = KSPGetType(check_ksp,&check_ksp_type);CHKERRQ(ierr); 4469 ierr = KSPGetIterationNumber(check_ksp,&its);CHKERRQ(ierr); 4470 ierr = KSPComputeExtremeSingularValues(check_ksp,&lambda_max_s,&lambda_min_s);CHKERRQ(ierr); 4471 ierr = PetscViewerASCIIPrintf(dbg_viewer,"Coarse problem eigenvalues (estimated with %d iterations of %s): %1.6e %1.6e (%1.6e %1.6e)\n",its,check_ksp_type,lambda_min,lambda_max,lambda_min_s,lambda_max_s);CHKERRQ(ierr); 4472 for (i=0;i<neigs;i++) { 4473 ierr = PetscViewerASCIIPrintf(dbg_viewer,"%1.6e %1.6ei\n",eigs_r[i],eigs_c[i]);CHKERRQ(ierr); 4474 } 4475 } 4476 ierr = PetscViewerFlush(dbg_viewer);CHKERRQ(ierr); 4477 ierr = PetscViewerASCIISubtractTab(dbg_viewer,2*(pcbddc->current_level+1));CHKERRQ(ierr); 4478 } 4479 ierr = KSPDestroy(&check_ksp);CHKERRQ(ierr); 4480 if (compute_eigs) { 4481 ierr = PetscFree(eigs_r);CHKERRQ(ierr); 4482 ierr = PetscFree(eigs_c);CHKERRQ(ierr); 4483 } 4484 } 4485 } 4486 /* print additional info */ 4487 if (pcbddc->dbg_flag) { 4488 /* waits until all processes reaches this point */ 4489 ierr = PetscBarrier((PetscObject)pc);CHKERRQ(ierr); 4490 ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"Coarse solver setup completed at level %d\n",pcbddc->current_level);CHKERRQ(ierr); 4491 ierr = PetscViewerFlush(pcbddc->dbg_viewer);CHKERRQ(ierr); 4492 } 4493 4494 /* free memory */ 4495 ierr = MatNullSpaceDestroy(&CoarseNullSpace);CHKERRQ(ierr); 4496 ierr = MatDestroy(&coarse_mat);CHKERRQ(ierr); 4497 PetscFunctionReturn(0); 4498 } 4499 4500 #undef __FUNCT__ 4501 #define __FUNCT__ "PCBDDCComputePrimalNumbering" 4502 PetscErrorCode PCBDDCComputePrimalNumbering(PC pc,PetscInt* coarse_size_n,PetscInt** local_primal_indices_n) 4503 { 4504 PC_BDDC* pcbddc = (PC_BDDC*)pc->data; 4505 PC_IS* pcis = (PC_IS*)pc->data; 4506 Mat_IS* matis = (Mat_IS*)pc->pmat->data; 4507 PetscInt i,coarse_size=0; 4508 PetscInt *local_primal_indices=NULL; 4509 PetscErrorCode ierr; 4510 4511 PetscFunctionBegin; 4512 /* Compute global number of coarse dofs */ 4513 if (!pcbddc->primal_indices_local_idxs && pcbddc->local_primal_size) { 4514 SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_PLIB,"BDDC Local primal indices have not been created"); 4515 } 4516 ierr = PCBDDCSubsetNumbering(PetscObjectComm((PetscObject)(pc->pmat)),matis->mapping,pcbddc->local_primal_size,pcbddc->primal_indices_local_idxs,NULL,&coarse_size,&local_primal_indices);CHKERRQ(ierr); 4517 4518 /* check numbering */ 4519 if (pcbddc->dbg_flag) { 4520 PetscScalar coarsesum,*array; 4521 PetscBool set_error = PETSC_FALSE,set_error_reduced = PETSC_FALSE; 4522 4523 ierr = PetscViewerFlush(pcbddc->dbg_viewer);CHKERRQ(ierr); 4524 ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"--------------------------------------------------\n");CHKERRQ(ierr); 4525 ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"Check coarse indices\n");CHKERRQ(ierr); 4526 ierr = PetscViewerASCIISynchronizedAllow(pcbddc->dbg_viewer,PETSC_TRUE);CHKERRQ(ierr); 4527 ierr = VecSet(pcis->vec1_N,0.0);CHKERRQ(ierr); 4528 for (i=0;i<pcbddc->local_primal_size;i++) { 4529 ierr = VecSetValue(pcis->vec1_N,pcbddc->primal_indices_local_idxs[i],1.0,INSERT_VALUES);CHKERRQ(ierr); 4530 } 4531 ierr = VecAssemblyBegin(pcis->vec1_N);CHKERRQ(ierr); 4532 ierr = VecAssemblyEnd(pcis->vec1_N);CHKERRQ(ierr); 4533 ierr = VecSet(pcis->vec1_global,0.0);CHKERRQ(ierr); 4534 ierr = VecScatterBegin(matis->ctx,pcis->vec1_N,pcis->vec1_global,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 4535 ierr = VecScatterEnd(matis->ctx,pcis->vec1_N,pcis->vec1_global,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 4536 ierr = VecScatterBegin(matis->ctx,pcis->vec1_global,pcis->vec1_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 4537 ierr = VecScatterEnd(matis->ctx,pcis->vec1_global,pcis->vec1_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 4538 ierr = VecGetArray(pcis->vec1_N,&array);CHKERRQ(ierr); 4539 for (i=0;i<pcis->n;i++) { 4540 if (array[i] == 1.0) { 4541 set_error = PETSC_TRUE; 4542 ierr = PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"Subdomain %04d: local index %d owned by a single process!\n",PetscGlobalRank,i);CHKERRQ(ierr); 4543 } 4544 } 4545 ierr = MPI_Allreduce(&set_error,&set_error_reduced,1,MPIU_BOOL,MPI_LOR,PetscObjectComm((PetscObject)pc));CHKERRQ(ierr); 4546 ierr = PetscViewerFlush(pcbddc->dbg_viewer);CHKERRQ(ierr); 4547 for (i=0;i<pcis->n;i++) { 4548 if (PetscRealPart(array[i]) > 0.0) array[i] = 1.0/PetscRealPart(array[i]); 4549 } 4550 ierr = VecRestoreArray(pcis->vec1_N,&array);CHKERRQ(ierr); 4551 ierr = VecSet(pcis->vec1_global,0.0);CHKERRQ(ierr); 4552 ierr = VecScatterBegin(matis->ctx,pcis->vec1_N,pcis->vec1_global,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 4553 ierr = VecScatterEnd(matis->ctx,pcis->vec1_N,pcis->vec1_global,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 4554 ierr = VecSum(pcis->vec1_global,&coarsesum);CHKERRQ(ierr); 4555 ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"Size of coarse problem is %d (%lf)\n",coarse_size,PetscRealPart(coarsesum));CHKERRQ(ierr); 4556 if (pcbddc->dbg_flag > 1 || set_error_reduced) { 4557 PetscInt *gidxs; 4558 4559 ierr = PetscMalloc1(pcbddc->local_primal_size,&gidxs);CHKERRQ(ierr); 4560 ierr = ISLocalToGlobalMappingApply(matis->mapping,pcbddc->local_primal_size,pcbddc->primal_indices_local_idxs,gidxs);CHKERRQ(ierr); 4561 ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"Distribution of local primal indices\n");CHKERRQ(ierr); 4562 ierr = PetscViewerFlush(pcbddc->dbg_viewer);CHKERRQ(ierr); 4563 ierr = PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"Subdomain %04d\n",PetscGlobalRank);CHKERRQ(ierr); 4564 for (i=0;i<pcbddc->local_primal_size;i++) { 4565 ierr = PetscViewerASCIISynchronizedPrintf(pcbddc->dbg_viewer,"local_primal_indices[%d]=%d (%d,%d)\n",i,local_primal_indices[i],pcbddc->primal_indices_local_idxs[i],gidxs[i]);CHKERRQ(ierr); 4566 } 4567 ierr = PetscViewerFlush(pcbddc->dbg_viewer);CHKERRQ(ierr); 4568 ierr = PetscFree(gidxs);CHKERRQ(ierr); 4569 } 4570 ierr = PetscViewerFlush(pcbddc->dbg_viewer);CHKERRQ(ierr); 4571 if (set_error_reduced) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_PLIB,"BDDC Numbering of coarse dofs failed"); 4572 } 4573 /* ierr = PetscPrintf(PetscObjectComm((PetscObject)pc),"Size of coarse problem is %d\n",coarse_size);CHKERRQ(ierr); */ 4574 /* get back data */ 4575 *coarse_size_n = coarse_size; 4576 *local_primal_indices_n = local_primal_indices; 4577 PetscFunctionReturn(0); 4578 } 4579 4580 #undef __FUNCT__ 4581 #define __FUNCT__ "PCBDDCGlobalToLocal" 4582 PetscErrorCode PCBDDCGlobalToLocal(VecScatter g2l_ctx,Vec gwork, Vec lwork, IS globalis, IS* localis) 4583 { 4584 IS localis_t; 4585 PetscInt i,lsize,*idxs,n; 4586 PetscScalar *vals; 4587 PetscErrorCode ierr; 4588 4589 PetscFunctionBegin; 4590 /* get indices in local ordering exploiting local to global map */ 4591 ierr = ISGetLocalSize(globalis,&lsize);CHKERRQ(ierr); 4592 ierr = PetscMalloc1(lsize,&vals);CHKERRQ(ierr); 4593 for (i=0;i<lsize;i++) vals[i] = 1.0; 4594 ierr = ISGetIndices(globalis,(const PetscInt**)&idxs);CHKERRQ(ierr); 4595 ierr = VecSet(gwork,0.0);CHKERRQ(ierr); 4596 ierr = VecSet(lwork,0.0);CHKERRQ(ierr); 4597 if (idxs) { /* multilevel guard */ 4598 ierr = VecSetValues(gwork,lsize,idxs,vals,INSERT_VALUES);CHKERRQ(ierr); 4599 } 4600 ierr = VecAssemblyBegin(gwork);CHKERRQ(ierr); 4601 ierr = ISRestoreIndices(globalis,(const PetscInt**)&idxs);CHKERRQ(ierr); 4602 ierr = PetscFree(vals);CHKERRQ(ierr); 4603 ierr = VecAssemblyEnd(gwork);CHKERRQ(ierr); 4604 /* now compute set in local ordering */ 4605 ierr = VecScatterBegin(g2l_ctx,gwork,lwork,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 4606 ierr = VecScatterEnd(g2l_ctx,gwork,lwork,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 4607 ierr = VecGetArrayRead(lwork,(const PetscScalar**)&vals);CHKERRQ(ierr); 4608 ierr = VecGetSize(lwork,&n);CHKERRQ(ierr); 4609 for (i=0,lsize=0;i<n;i++) { 4610 if (PetscRealPart(vals[i]) > 0.5) { 4611 lsize++; 4612 } 4613 } 4614 ierr = PetscMalloc1(lsize,&idxs);CHKERRQ(ierr); 4615 for (i=0,lsize=0;i<n;i++) { 4616 if (PetscRealPart(vals[i]) > 0.5) { 4617 idxs[lsize++] = i; 4618 } 4619 } 4620 ierr = VecRestoreArrayRead(lwork,(const PetscScalar**)&vals);CHKERRQ(ierr); 4621 ierr = ISCreateGeneral(PetscObjectComm((PetscObject)gwork),lsize,idxs,PETSC_OWN_POINTER,&localis_t);CHKERRQ(ierr); 4622 *localis = localis_t; 4623 PetscFunctionReturn(0); 4624 } 4625 4626 /* the next two functions will be called in KSPMatMult if a change of basis has been requested */ 4627 #undef __FUNCT__ 4628 #define __FUNCT__ "PCBDDCMatMult_Private" 4629 static PetscErrorCode PCBDDCMatMult_Private(Mat A, Vec x, Vec y) 4630 { 4631 PCBDDCChange_ctx change_ctx; 4632 PetscErrorCode ierr; 4633 4634 PetscFunctionBegin; 4635 ierr = MatShellGetContext(A,&change_ctx);CHKERRQ(ierr); 4636 ierr = MatMult(change_ctx->global_change,x,change_ctx->work[0]);CHKERRQ(ierr); 4637 ierr = MatMult(change_ctx->original_mat,change_ctx->work[0],change_ctx->work[1]);CHKERRQ(ierr); 4638 ierr = MatMultTranspose(change_ctx->global_change,change_ctx->work[1],y);CHKERRQ(ierr); 4639 PetscFunctionReturn(0); 4640 } 4641 4642 #undef __FUNCT__ 4643 #define __FUNCT__ "PCBDDCMatMultTranspose_Private" 4644 static PetscErrorCode PCBDDCMatMultTranspose_Private(Mat A, Vec x, Vec y) 4645 { 4646 PCBDDCChange_ctx change_ctx; 4647 PetscErrorCode ierr; 4648 4649 PetscFunctionBegin; 4650 ierr = MatShellGetContext(A,&change_ctx);CHKERRQ(ierr); 4651 ierr = MatMult(change_ctx->global_change,x,change_ctx->work[0]);CHKERRQ(ierr); 4652 ierr = MatMultTranspose(change_ctx->original_mat,change_ctx->work[0],change_ctx->work[1]);CHKERRQ(ierr); 4653 ierr = MatMultTranspose(change_ctx->global_change,change_ctx->work[1],y);CHKERRQ(ierr); 4654 PetscFunctionReturn(0); 4655 } 4656 4657 #undef __FUNCT__ 4658 #define __FUNCT__ "PCBDDCSetUpSubSchurs" 4659 PetscErrorCode PCBDDCSetUpSubSchurs(PC pc) 4660 { 4661 PC_BDDC *pcbddc=(PC_BDDC*)pc->data; 4662 PCBDDCSubSchurs sub_schurs=pcbddc->sub_schurs; 4663 PetscInt *used_xadj,*used_adjncy; 4664 PetscBool free_used_adj; 4665 PetscErrorCode ierr; 4666 4667 PetscFunctionBegin; 4668 /* decide the adjacency to be used for determining internal problems for local schur on subsets */ 4669 free_used_adj = PETSC_FALSE; 4670 if (pcbddc->sub_schurs_layers == -1) { 4671 used_xadj = NULL; 4672 used_adjncy = NULL; 4673 } else { 4674 if (pcbddc->sub_schurs_use_useradj && pcbddc->mat_graph->xadj) { 4675 used_xadj = pcbddc->mat_graph->xadj; 4676 used_adjncy = pcbddc->mat_graph->adjncy; 4677 } else if (pcbddc->computed_rowadj) { 4678 used_xadj = pcbddc->mat_graph->xadj; 4679 used_adjncy = pcbddc->mat_graph->adjncy; 4680 } else { 4681 PetscBool flg_row=PETSC_FALSE; 4682 const PetscInt *xadj,*adjncy; 4683 PetscInt nvtxs; 4684 4685 ierr = MatGetRowIJ(pcbddc->local_mat,0,PETSC_TRUE,PETSC_FALSE,&nvtxs,&xadj,&adjncy,&flg_row);CHKERRQ(ierr); 4686 if (flg_row) { 4687 ierr = PetscMalloc2(nvtxs+1,&used_xadj,xadj[nvtxs],&used_adjncy);CHKERRQ(ierr); 4688 ierr = PetscMemcpy(used_xadj,xadj,(nvtxs+1)*sizeof(*xadj));CHKERRQ(ierr); 4689 ierr = PetscMemcpy(used_adjncy,adjncy,(xadj[nvtxs])*sizeof(*adjncy));CHKERRQ(ierr); 4690 free_used_adj = PETSC_TRUE; 4691 } else { 4692 pcbddc->sub_schurs_layers = -1; 4693 used_xadj = NULL; 4694 used_adjncy = NULL; 4695 } 4696 ierr = MatRestoreRowIJ(pcbddc->local_mat,0,PETSC_TRUE,PETSC_FALSE,&nvtxs,&xadj,&adjncy,&flg_row);CHKERRQ(ierr); 4697 } 4698 } 4699 4700 /* set Schur complement solver for interior variables (used only when MUMPS is not present) */ 4701 if (!sub_schurs->use_mumps) { 4702 ierr = MatSchurComplementSetKSP(sub_schurs->S,pcbddc->ksp_D);CHKERRQ(ierr); 4703 } 4704 4705 /* setup sub_schurs data */ 4706 ierr = PCBDDCSubSchursSetUp(sub_schurs,used_xadj,used_adjncy,pcbddc->sub_schurs_layers,pcbddc->faster_deluxe,pcbddc->adaptive_selection,pcbddc->use_edges,pcbddc->use_faces);CHKERRQ(ierr); 4707 4708 /* free adjacency */ 4709 if (free_used_adj) { 4710 ierr = PetscFree2(used_xadj,used_adjncy);CHKERRQ(ierr); 4711 } 4712 PetscFunctionReturn(0); 4713 } 4714 4715 #undef __FUNCT__ 4716 #define __FUNCT__ "PCBDDCInitSubSchurs" 4717 PetscErrorCode PCBDDCInitSubSchurs(PC pc) 4718 { 4719 PC_IS *pcis=(PC_IS*)pc->data; 4720 PC_BDDC *pcbddc=(PC_BDDC*)pc->data; 4721 PCBDDCSubSchurs sub_schurs=pcbddc->sub_schurs; 4722 PCBDDCGraph graph; 4723 Mat S_j; 4724 PetscErrorCode ierr; 4725 4726 PetscFunctionBegin; 4727 /* attach interface graph for determining subsets */ 4728 if (pcbddc->sub_schurs_rebuild) { /* in case rebuild has been requested, it uses a graph generated only by the neighbouring information */ 4729 IS verticesIS; 4730 4731 ierr = PCBDDCGraphGetCandidatesIS(pcbddc->mat_graph,NULL,NULL,NULL,NULL,&verticesIS);CHKERRQ(ierr); 4732 ierr = PCBDDCGraphCreate(&graph);CHKERRQ(ierr); 4733 ierr = PCBDDCGraphInit(graph,pcbddc->mat_graph->l2gmap,pcbddc->mat_graph->nvtxs_global);CHKERRQ(ierr); 4734 ierr = PCBDDCGraphSetUp(graph,0,NULL,pcbddc->DirichletBoundariesLocal,0,NULL,verticesIS);CHKERRQ(ierr); 4735 ierr = PCBDDCGraphComputeConnectedComponents(graph);CHKERRQ(ierr); 4736 ierr = ISDestroy(&verticesIS);CHKERRQ(ierr); 4737 /* 4738 if (pcbddc->dbg_flag) { 4739 ierr = PCBDDCGraphASCIIView(graph,pcbddc->dbg_flag,pcbddc->dbg_viewer);CHKERRQ(ierr); 4740 } 4741 */ 4742 } else { 4743 graph = pcbddc->mat_graph; 4744 } 4745 4746 /* Create Schur complement matrix */ 4747 ierr = MatCreateSchurComplement(pcis->A_II,pcis->A_II,pcis->A_IB,pcis->A_BI,pcis->A_BB,&S_j);CHKERRQ(ierr); 4748 4749 /* sub_schurs init */ 4750 ierr = PCBDDCSubSchursInit(sub_schurs,pcbddc->local_mat,S_j,pcis->is_I_local,pcis->is_B_local,graph,pcis->BtoNmap);CHKERRQ(ierr); 4751 ierr = MatDestroy(&S_j);CHKERRQ(ierr); 4752 /* free graph struct */ 4753 if (pcbddc->sub_schurs_rebuild) { 4754 ierr = PCBDDCGraphDestroy(&graph);CHKERRQ(ierr); 4755 } 4756 PetscFunctionReturn(0); 4757 } 4758