1dba47a55SKris Buschelman 2c6db04a5SJed Brown #include <../src/ksp/pc/impls/factor/icc/icc.h> /*I "petscpc.h" I*/ 39b54502bSHong Zhang 49b54502bSHong Zhang #undef __FUNCT__ 54cccfbddSHong Zhang #define __FUNCT__ "PCSetUp_ICC" 64cccfbddSHong Zhang static PetscErrorCode PCSetUp_ICC(PC pc) 79b54502bSHong Zhang { 89b54502bSHong Zhang PC_ICC *icc = (PC_ICC*)pc->data; 99b54502bSHong Zhang IS perm,cperm; 109b54502bSHong Zhang PetscErrorCode ierr; 11f3a39becSBarry Smith MatInfo info; 1200c67f3bSHong Zhang const MatSolverPackage stype; 1300e125f8SBarry Smith MatFactorError err; 149b54502bSHong Zhang 159b54502bSHong Zhang PetscFunctionBegin; 16075768bcSBarry Smith ierr = MatGetOrdering(pc->pmat, ((PC_Factor*)icc)->ordering,&perm,&cperm);CHKERRQ(ierr); 179b54502bSHong Zhang 1884d44b13SHong Zhang ierr = MatSetErrorIfFailure(pc->pmat,pc->erroriffailure);CHKERRQ(ierr); 199b54502bSHong Zhang if (!pc->setupcalled) { 20d09a07f4SBarry Smith if (!((PC_Factor*)icc)->fact) { 21174acd27SBarry Smith ierr = MatGetFactor(pc->pmat,((PC_Factor*)icc)->solvertype,MAT_FACTOR_ICC,&((PC_Factor*)icc)->fact);CHKERRQ(ierr); 22a1f19f5aSHong Zhang } 23075768bcSBarry Smith ierr = MatICCFactorSymbolic(((PC_Factor*)icc)->fact,pc->pmat,perm,&((PC_Factor*)icc)->info);CHKERRQ(ierr); 249b54502bSHong Zhang } else if (pc->flag != SAME_NONZERO_PATTERN) { 256bf464f9SBarry Smith ierr = MatDestroy(&((PC_Factor*)icc)->fact);CHKERRQ(ierr); 2614798fb4SJed Brown ierr = MatGetFactor(pc->pmat,((PC_Factor*)icc)->solvertype,MAT_FACTOR_ICC,&((PC_Factor*)icc)->fact);CHKERRQ(ierr); 27075768bcSBarry Smith ierr = MatICCFactorSymbolic(((PC_Factor*)icc)->fact,pc->pmat,perm,&((PC_Factor*)icc)->info);CHKERRQ(ierr); 289b54502bSHong Zhang } 29075768bcSBarry Smith ierr = MatGetInfo(((PC_Factor*)icc)->fact,MAT_LOCAL,&info);CHKERRQ(ierr); 30*3d1c1ea0SBarry Smith icc->hdr.actualfill = info.fill_ratio_needed; 31f3a39becSBarry Smith 32fcfd50ebSBarry Smith ierr = ISDestroy(&cperm);CHKERRQ(ierr); 33fcfd50ebSBarry Smith ierr = ISDestroy(&perm);CHKERRQ(ierr); 346baea169SHong Zhang 3500e125f8SBarry Smith ierr = MatFactorGetError(((PC_Factor*)icc)->fact,&err);CHKERRQ(ierr); 3600e125f8SBarry Smith if (err) { /* FactorSymbolic() fails */ 3700e125f8SBarry Smith pc->failedreason = (PCFailedReason)err; 386baea169SHong Zhang PetscFunctionReturn(0); 396baea169SHong Zhang } 406baea169SHong Zhang 41075768bcSBarry Smith ierr = MatCholeskyFactorNumeric(((PC_Factor*)icc)->fact,pc->pmat,&((PC_Factor*)icc)->info);CHKERRQ(ierr); 4200e125f8SBarry Smith ierr = MatFactorGetError(((PC_Factor*)icc)->fact,&err);CHKERRQ(ierr); 4300e125f8SBarry Smith if (err) { /* FactorNumeric() fails */ 4400e125f8SBarry Smith pc->failedreason = (PCFailedReason)err; 456baea169SHong Zhang } 4600c67f3bSHong Zhang 4700c67f3bSHong Zhang ierr = PCFactorGetMatSolverPackage(pc,&stype);CHKERRQ(ierr); 4800c67f3bSHong Zhang if (!stype) { 4900e125f8SBarry Smith const MatSolverPackage solverpackage; 5000e125f8SBarry Smith ierr = MatFactorGetSolverPackage(((PC_Factor*)icc)->fact,&solverpackage);CHKERRQ(ierr); 5100e125f8SBarry Smith ierr = PCFactorSetMatSolverPackage(pc,solverpackage);CHKERRQ(ierr); 5200c67f3bSHong Zhang } 539b54502bSHong Zhang PetscFunctionReturn(0); 549b54502bSHong Zhang } 559b54502bSHong Zhang 569b54502bSHong Zhang #undef __FUNCT__ 57574deadeSBarry Smith #define __FUNCT__ "PCReset_ICC" 58574deadeSBarry Smith static PetscErrorCode PCReset_ICC(PC pc) 59574deadeSBarry Smith { 60574deadeSBarry Smith PC_ICC *icc = (PC_ICC*)pc->data; 61574deadeSBarry Smith PetscErrorCode ierr; 62574deadeSBarry Smith 63574deadeSBarry Smith PetscFunctionBegin; 646bf464f9SBarry Smith ierr = MatDestroy(&((PC_Factor*)icc)->fact);CHKERRQ(ierr); 65574deadeSBarry Smith PetscFunctionReturn(0); 66574deadeSBarry Smith } 67574deadeSBarry Smith 68574deadeSBarry Smith #undef __FUNCT__ 699b54502bSHong Zhang #define __FUNCT__ "PCDestroy_ICC" 709b54502bSHong Zhang static PetscErrorCode PCDestroy_ICC(PC pc) 719b54502bSHong Zhang { 729b54502bSHong Zhang PC_ICC *icc = (PC_ICC*)pc->data; 739b54502bSHong Zhang PetscErrorCode ierr; 749b54502bSHong Zhang 759b54502bSHong Zhang PetscFunctionBegin; 76574deadeSBarry Smith ierr = PCReset_ICC(pc);CHKERRQ(ierr); 77503cfb0cSBarry Smith ierr = PetscFree(((PC_Factor*)icc)->ordering);CHKERRQ(ierr); 78503cfb0cSBarry Smith ierr = PetscFree(((PC_Factor*)icc)->solvertype);CHKERRQ(ierr); 79c31cb41cSBarry Smith ierr = PetscFree(pc->data);CHKERRQ(ierr); 809b54502bSHong Zhang PetscFunctionReturn(0); 819b54502bSHong Zhang } 829b54502bSHong Zhang 839b54502bSHong Zhang #undef __FUNCT__ 849b54502bSHong Zhang #define __FUNCT__ "PCApply_ICC" 859b54502bSHong Zhang static PetscErrorCode PCApply_ICC(PC pc,Vec x,Vec y) 869b54502bSHong Zhang { 879b54502bSHong Zhang PC_ICC *icc = (PC_ICC*)pc->data; 889b54502bSHong Zhang PetscErrorCode ierr; 899b54502bSHong Zhang 909b54502bSHong Zhang PetscFunctionBegin; 91075768bcSBarry Smith ierr = MatSolve(((PC_Factor*)icc)->fact,x,y);CHKERRQ(ierr); 929b54502bSHong Zhang PetscFunctionReturn(0); 939b54502bSHong Zhang } 949b54502bSHong Zhang 959b54502bSHong Zhang #undef __FUNCT__ 969b54502bSHong Zhang #define __FUNCT__ "PCApplySymmetricLeft_ICC" 979b54502bSHong Zhang static PetscErrorCode PCApplySymmetricLeft_ICC(PC pc,Vec x,Vec y) 989b54502bSHong Zhang { 999b54502bSHong Zhang PetscErrorCode ierr; 1009b54502bSHong Zhang PC_ICC *icc = (PC_ICC*)pc->data; 1019b54502bSHong Zhang 1029b54502bSHong Zhang PetscFunctionBegin; 103075768bcSBarry Smith ierr = MatForwardSolve(((PC_Factor*)icc)->fact,x,y);CHKERRQ(ierr); 1049b54502bSHong Zhang PetscFunctionReturn(0); 1059b54502bSHong Zhang } 1069b54502bSHong Zhang 1079b54502bSHong Zhang #undef __FUNCT__ 1089b54502bSHong Zhang #define __FUNCT__ "PCApplySymmetricRight_ICC" 1099b54502bSHong Zhang static PetscErrorCode PCApplySymmetricRight_ICC(PC pc,Vec x,Vec y) 1109b54502bSHong Zhang { 1119b54502bSHong Zhang PetscErrorCode ierr; 1129b54502bSHong Zhang PC_ICC *icc = (PC_ICC*)pc->data; 1139b54502bSHong Zhang 1149b54502bSHong Zhang PetscFunctionBegin; 115075768bcSBarry Smith ierr = MatBackwardSolve(((PC_Factor*)icc)->fact,x,y);CHKERRQ(ierr); 1169b54502bSHong Zhang PetscFunctionReturn(0); 1179b54502bSHong Zhang } 1189b54502bSHong Zhang 1199b54502bSHong Zhang #undef __FUNCT__ 1209b54502bSHong Zhang #define __FUNCT__ "PCSetFromOptions_ICC" 1214416b707SBarry Smith static PetscErrorCode PCSetFromOptions_ICC(PetscOptionItems *PetscOptionsObject,PC pc) 1229b54502bSHong Zhang { 1239b54502bSHong Zhang PC_ICC *icc = (PC_ICC*)pc->data; 124ace3abfcSBarry Smith PetscBool flg; 1259b54502bSHong Zhang PetscErrorCode ierr; 1262fa5cd67SKarl Rupp /* PetscReal dt[3];*/ 1279b54502bSHong Zhang 1289b54502bSHong Zhang PetscFunctionBegin; 129e55864a3SBarry Smith ierr = PetscOptionsHead(PetscOptionsObject,"ICC Options");CHKERRQ(ierr); 130e55864a3SBarry Smith ierr = PCSetFromOptions_Factor(PetscOptionsObject,pc);CHKERRQ(ierr); 1319b54502bSHong Zhang 1328ff23777SHong Zhang ierr = PetscOptionsReal("-pc_factor_levels","levels of fill","PCFactorSetLevels",((PC_Factor*)icc)->info.levels,&((PC_Factor*)icc)->info.levels,&flg);CHKERRQ(ierr); 1335a586d82SBarry Smith /*dt[0] = ((PC_Factor*)icc)->info.dt; 1344c9036c7SBarry Smith dt[1] = ((PC_Factor*)icc)->info.dtcol; 1354c9036c7SBarry Smith dt[2] = ((PC_Factor*)icc)->info.dtcount; 13678fc6b22SHong Zhang PetscInt dtmax = 3; 137b7c853c4SBarry Smith ierr = PetscOptionsRealArray("-pc_factor_drop_tolerance","<dt,dtcol,maxrowcount>","PCFactorSetDropTolerance",dt,&dtmax,&flg);CHKERRQ(ierr); 1384c9036c7SBarry Smith if (flg) { 139b7c853c4SBarry Smith ierr = PCFactorSetDropTolerance(pc,dt[0],dt[1],(PetscInt)dt[2]);CHKERRQ(ierr); 1404c9036c7SBarry Smith } 14178fc6b22SHong Zhang */ 1429b54502bSHong Zhang ierr = PetscOptionsTail();CHKERRQ(ierr); 1439b54502bSHong Zhang PetscFunctionReturn(0); 1449b54502bSHong Zhang } 1459b54502bSHong Zhang 1469b54502bSHong Zhang #undef __FUNCT__ 1479b54502bSHong Zhang #define __FUNCT__ "PCView_ICC" 1489b54502bSHong Zhang static PetscErrorCode PCView_ICC(PC pc,PetscViewer viewer) 1499b54502bSHong Zhang { 1509b54502bSHong Zhang PetscErrorCode ierr; 1519b54502bSHong Zhang 1529b54502bSHong Zhang PetscFunctionBegin; 153914a5d51SHong Zhang ierr = PCView_Factor(pc,viewer);CHKERRQ(ierr); 1549b54502bSHong Zhang PetscFunctionReturn(0); 1559b54502bSHong Zhang } 1569b54502bSHong Zhang 1577087cfbeSBarry Smith extern PetscErrorCode PCFactorSetDropTolerance_ILU(PC,PetscReal,PetscReal,PetscInt); 1584c9036c7SBarry Smith 1599b54502bSHong Zhang /*MC 1609b54502bSHong Zhang PCICC - Incomplete Cholesky factorization preconditioners. 1619b54502bSHong Zhang 1629b54502bSHong Zhang Options Database Keys: 1632401956bSBarry Smith + -pc_factor_levels <k> - number of levels of fill for ICC(k) 1642401956bSBarry Smith . -pc_factor_in_place - only for ICC(0) with natural ordering, reuses the space of the matrix for 1659b54502bSHong Zhang its factorization (overwrites original matrix) 16655ba2a51SBarry Smith . -pc_factor_fill <nfill> - expected amount of fill in factored matrix compared to original matrix, nfill > 1 167145b9266SHong Zhang - -pc_factor_mat_ordering_type <natural,nd,1wd,rcm,qmd> - set the row/column ordering of the factored matrix 1689b54502bSHong Zhang 1699b54502bSHong Zhang Level: beginner 1709b54502bSHong Zhang 1719b54502bSHong Zhang Concepts: incomplete Cholesky factorization 1729b54502bSHong Zhang 173d9ba8547SBarry Smith Notes: Only implemented for some matrix formats. Not implemented in parallel. 1749b54502bSHong Zhang 1759b54502bSHong Zhang For BAIJ matrices this implements a point block ICC. 1769b54502bSHong Zhang 1779b54502bSHong Zhang The Manteuffel shift is only implemented for matrices with block size 1 1789b54502bSHong Zhang 17914d2772eSHong Zhang By default, the Manteuffel is applied (for matrices with block size 1). Call PCFactorSetShiftType(pc,MAT_SHIFT_POSITIVE_DEFINITE); 1809b54502bSHong Zhang to turn off the shift. 1819b54502bSHong Zhang 182c582cd25SBarry Smith References: 18396a0c994SBarry Smith . 1. - TONY F. CHAN AND HENK A. VAN DER VORST, Review article: APPROXIMATE AND INCOMPLETE FACTORIZATIONS, 18496a0c994SBarry Smith Chapter in Parallel Numerical Algorithms, edited by D. Keyes, A. Semah, V. Venkatakrishnan, ICASE/LaRC Interdisciplinary Series in 18596a0c994SBarry Smith Science and Engineering, Kluwer. 186c582cd25SBarry Smith 1879b54502bSHong Zhang 1889b54502bSHong Zhang .seealso: PCCreate(), PCSetType(), PCType (for list of available types), PC, PCSOR, MatOrderingType, 18981f96dccSHong Zhang PCFactorSetZeroPivot(), PCFactorSetShiftType(), PCFactorSetShiftAmount(), 190e5a9bf91SBarry Smith PCFactorSetFill(), PCFactorSetMatOrderingType(), PCFactorSetReuseOrdering(), 1918ff23777SHong Zhang PCFactorSetLevels() 1929b54502bSHong Zhang 1939b54502bSHong Zhang M*/ 1949b54502bSHong Zhang 1959b54502bSHong Zhang #undef __FUNCT__ 1969b54502bSHong Zhang #define __FUNCT__ "PCCreate_ICC" 1978cc058d9SJed Brown PETSC_EXTERN PetscErrorCode PCCreate_ICC(PC pc) 1989b54502bSHong Zhang { 1999b54502bSHong Zhang PetscErrorCode ierr; 2009b54502bSHong Zhang PC_ICC *icc; 2019b54502bSHong Zhang 2029b54502bSHong Zhang PetscFunctionBegin; 203b00a9115SJed Brown ierr = PetscNewLog(pc,&icc);CHKERRQ(ierr); 204*3d1c1ea0SBarry Smith pc->data = (void*)icc; 205*3d1c1ea0SBarry Smith ierr = PCFactorInitialize(pc);CHKERRQ(ierr); 20619fd82e9SBarry Smith ierr = PetscStrallocpy(MATORDERINGNATURAL,(char**)&((PC_Factor*)icc)->ordering);CHKERRQ(ierr); 2072fa5cd67SKarl Rupp 208879e8a4dSBarry Smith ((PC_Factor*)icc)->factortype = MAT_FACTOR_ICC; 209075768bcSBarry Smith ((PC_Factor*)icc)->info.fill = 1.0; 210075768bcSBarry Smith ((PC_Factor*)icc)->info.dtcol = PETSC_DEFAULT; 211f4db908eSBarry Smith ((PC_Factor*)icc)->info.shifttype = (PetscReal) MAT_SHIFT_POSITIVE_DEFINITE; 2129b54502bSHong Zhang 2139b54502bSHong Zhang pc->ops->apply = PCApply_ICC; 214d674540eSJed Brown pc->ops->applytranspose = PCApply_ICC; 2154cccfbddSHong Zhang pc->ops->setup = PCSetUp_ICC; 216574deadeSBarry Smith pc->ops->reset = PCReset_ICC; 2179b54502bSHong Zhang pc->ops->destroy = PCDestroy_ICC; 2189b54502bSHong Zhang pc->ops->setfromoptions = PCSetFromOptions_ICC; 2199b54502bSHong Zhang pc->ops->view = PCView_ICC; 2209b54502bSHong Zhang pc->ops->applysymmetricleft = PCApplySymmetricLeft_ICC; 2219b54502bSHong Zhang pc->ops->applysymmetricright = PCApplySymmetricRight_ICC; 2229b54502bSHong Zhang PetscFunctionReturn(0); 2239b54502bSHong Zhang } 2249b54502bSHong Zhang 2259b54502bSHong Zhang 226