1dba47a55SKris Buschelman 2c6db04a5SJed Brown #include <../src/ksp/pc/impls/factor/icc/icc.h> /*I "petscpc.h" I*/ 39b54502bSHong Zhang 44cccfbddSHong Zhang static PetscErrorCode PCSetUp_ICC(PC pc) 59b54502bSHong Zhang { 69b54502bSHong Zhang PC_ICC *icc = (PC_ICC*)pc->data; 79b54502bSHong Zhang IS perm,cperm; 89b54502bSHong Zhang PetscErrorCode ierr; 9f3a39becSBarry Smith MatInfo info; 10ea799195SBarry Smith MatSolverType stype; 1100e125f8SBarry Smith MatFactorError err; 129b54502bSHong Zhang 139b54502bSHong Zhang PetscFunctionBegin; 14c6e4fdc6SHong Zhang pc->failedreason = PC_NOERROR; 15075768bcSBarry Smith ierr = MatGetOrdering(pc->pmat, ((PC_Factor*)icc)->ordering,&perm,&cperm);CHKERRQ(ierr); 169b54502bSHong Zhang 1784d44b13SHong Zhang ierr = MatSetErrorIfFailure(pc->pmat,pc->erroriffailure);CHKERRQ(ierr); 189b54502bSHong Zhang if (!pc->setupcalled) { 19d09a07f4SBarry Smith if (!((PC_Factor*)icc)->fact) { 20174acd27SBarry Smith ierr = MatGetFactor(pc->pmat,((PC_Factor*)icc)->solvertype,MAT_FACTOR_ICC,&((PC_Factor*)icc)->fact);CHKERRQ(ierr); 21a1f19f5aSHong Zhang } 22075768bcSBarry Smith ierr = MatICCFactorSymbolic(((PC_Factor*)icc)->fact,pc->pmat,perm,&((PC_Factor*)icc)->info);CHKERRQ(ierr); 239b54502bSHong Zhang } else if (pc->flag != SAME_NONZERO_PATTERN) { 246bf464f9SBarry Smith ierr = MatDestroy(&((PC_Factor*)icc)->fact);CHKERRQ(ierr); 2514798fb4SJed Brown ierr = MatGetFactor(pc->pmat,((PC_Factor*)icc)->solvertype,MAT_FACTOR_ICC,&((PC_Factor*)icc)->fact);CHKERRQ(ierr); 26075768bcSBarry Smith ierr = MatICCFactorSymbolic(((PC_Factor*)icc)->fact,pc->pmat,perm,&((PC_Factor*)icc)->info);CHKERRQ(ierr); 279b54502bSHong Zhang } 28075768bcSBarry Smith ierr = MatGetInfo(((PC_Factor*)icc)->fact,MAT_LOCAL,&info);CHKERRQ(ierr); 293d1c1ea0SBarry Smith icc->hdr.actualfill = info.fill_ratio_needed; 30f3a39becSBarry Smith 31fcfd50ebSBarry Smith ierr = ISDestroy(&cperm);CHKERRQ(ierr); 32fcfd50ebSBarry Smith ierr = ISDestroy(&perm);CHKERRQ(ierr); 336baea169SHong Zhang 3400e125f8SBarry Smith ierr = MatFactorGetError(((PC_Factor*)icc)->fact,&err);CHKERRQ(ierr); 3500e125f8SBarry Smith if (err) { /* FactorSymbolic() fails */ 3600e125f8SBarry Smith pc->failedreason = (PCFailedReason)err; 376baea169SHong Zhang PetscFunctionReturn(0); 386baea169SHong Zhang } 396baea169SHong Zhang 40075768bcSBarry Smith ierr = MatCholeskyFactorNumeric(((PC_Factor*)icc)->fact,pc->pmat,&((PC_Factor*)icc)->info);CHKERRQ(ierr); 4100e125f8SBarry Smith ierr = MatFactorGetError(((PC_Factor*)icc)->fact,&err);CHKERRQ(ierr); 4200e125f8SBarry Smith if (err) { /* FactorNumeric() fails */ 4300e125f8SBarry Smith pc->failedreason = (PCFailedReason)err; 446baea169SHong Zhang } 4500c67f3bSHong Zhang 463ca39a21SBarry Smith ierr = PCFactorGetMatSolverType(pc,&stype);CHKERRQ(ierr); 4700c67f3bSHong Zhang if (!stype) { 48ea799195SBarry Smith MatSolverType solverpackage; 493ca39a21SBarry Smith ierr = MatFactorGetSolverType(((PC_Factor*)icc)->fact,&solverpackage);CHKERRQ(ierr); 503ca39a21SBarry Smith ierr = PCFactorSetMatSolverType(pc,solverpackage);CHKERRQ(ierr); 5100c67f3bSHong Zhang } 529b54502bSHong Zhang PetscFunctionReturn(0); 539b54502bSHong Zhang } 549b54502bSHong Zhang 55574deadeSBarry Smith static PetscErrorCode PCReset_ICC(PC pc) 56574deadeSBarry Smith { 57574deadeSBarry Smith PC_ICC *icc = (PC_ICC*)pc->data; 58574deadeSBarry Smith PetscErrorCode ierr; 59574deadeSBarry Smith 60574deadeSBarry Smith PetscFunctionBegin; 616bf464f9SBarry Smith ierr = MatDestroy(&((PC_Factor*)icc)->fact);CHKERRQ(ierr); 62574deadeSBarry Smith PetscFunctionReturn(0); 63574deadeSBarry Smith } 64574deadeSBarry Smith 659b54502bSHong Zhang static PetscErrorCode PCDestroy_ICC(PC pc) 669b54502bSHong Zhang { 679b54502bSHong Zhang PC_ICC *icc = (PC_ICC*)pc->data; 689b54502bSHong Zhang PetscErrorCode ierr; 699b54502bSHong Zhang 709b54502bSHong Zhang PetscFunctionBegin; 71574deadeSBarry Smith ierr = PCReset_ICC(pc);CHKERRQ(ierr); 72503cfb0cSBarry Smith ierr = PetscFree(((PC_Factor*)icc)->ordering);CHKERRQ(ierr); 73503cfb0cSBarry Smith ierr = PetscFree(((PC_Factor*)icc)->solvertype);CHKERRQ(ierr); 74c31cb41cSBarry Smith ierr = PetscFree(pc->data);CHKERRQ(ierr); 759b54502bSHong Zhang PetscFunctionReturn(0); 769b54502bSHong Zhang } 779b54502bSHong Zhang 789b54502bSHong Zhang static PetscErrorCode PCApply_ICC(PC pc,Vec x,Vec y) 799b54502bSHong Zhang { 809b54502bSHong Zhang PC_ICC *icc = (PC_ICC*)pc->data; 819b54502bSHong Zhang PetscErrorCode ierr; 829b54502bSHong Zhang 839b54502bSHong Zhang PetscFunctionBegin; 84075768bcSBarry Smith ierr = MatSolve(((PC_Factor*)icc)->fact,x,y);CHKERRQ(ierr); 859b54502bSHong Zhang PetscFunctionReturn(0); 869b54502bSHong Zhang } 879b54502bSHong Zhang 889b54502bSHong Zhang static PetscErrorCode PCApplySymmetricLeft_ICC(PC pc,Vec x,Vec y) 899b54502bSHong Zhang { 909b54502bSHong Zhang PetscErrorCode ierr; 919b54502bSHong Zhang PC_ICC *icc = (PC_ICC*)pc->data; 929b54502bSHong Zhang 939b54502bSHong Zhang PetscFunctionBegin; 94075768bcSBarry Smith ierr = MatForwardSolve(((PC_Factor*)icc)->fact,x,y);CHKERRQ(ierr); 959b54502bSHong Zhang PetscFunctionReturn(0); 969b54502bSHong Zhang } 979b54502bSHong Zhang 989b54502bSHong Zhang static PetscErrorCode PCApplySymmetricRight_ICC(PC pc,Vec x,Vec y) 999b54502bSHong Zhang { 1009b54502bSHong Zhang PetscErrorCode ierr; 1019b54502bSHong Zhang PC_ICC *icc = (PC_ICC*)pc->data; 1029b54502bSHong Zhang 1039b54502bSHong Zhang PetscFunctionBegin; 104075768bcSBarry Smith ierr = MatBackwardSolve(((PC_Factor*)icc)->fact,x,y);CHKERRQ(ierr); 1059b54502bSHong Zhang PetscFunctionReturn(0); 1069b54502bSHong Zhang } 1079b54502bSHong Zhang 1084416b707SBarry Smith static PetscErrorCode PCSetFromOptions_ICC(PetscOptionItems *PetscOptionsObject,PC pc) 1099b54502bSHong Zhang { 1109b54502bSHong Zhang PC_ICC *icc = (PC_ICC*)pc->data; 111ace3abfcSBarry Smith PetscBool flg; 1129b54502bSHong Zhang PetscErrorCode ierr; 1132fa5cd67SKarl Rupp /* PetscReal dt[3];*/ 1149b54502bSHong Zhang 1159b54502bSHong Zhang PetscFunctionBegin; 116e55864a3SBarry Smith ierr = PetscOptionsHead(PetscOptionsObject,"ICC Options");CHKERRQ(ierr); 117e55864a3SBarry Smith ierr = PCSetFromOptions_Factor(PetscOptionsObject,pc);CHKERRQ(ierr); 1189b54502bSHong Zhang 1198ff23777SHong Zhang ierr = PetscOptionsReal("-pc_factor_levels","levels of fill","PCFactorSetLevels",((PC_Factor*)icc)->info.levels,&((PC_Factor*)icc)->info.levels,&flg);CHKERRQ(ierr); 1205a586d82SBarry Smith /*dt[0] = ((PC_Factor*)icc)->info.dt; 1214c9036c7SBarry Smith dt[1] = ((PC_Factor*)icc)->info.dtcol; 1224c9036c7SBarry Smith dt[2] = ((PC_Factor*)icc)->info.dtcount; 12378fc6b22SHong Zhang PetscInt dtmax = 3; 124b7c853c4SBarry Smith ierr = PetscOptionsRealArray("-pc_factor_drop_tolerance","<dt,dtcol,maxrowcount>","PCFactorSetDropTolerance",dt,&dtmax,&flg);CHKERRQ(ierr); 1254c9036c7SBarry Smith if (flg) { 126b7c853c4SBarry Smith ierr = PCFactorSetDropTolerance(pc,dt[0],dt[1],(PetscInt)dt[2]);CHKERRQ(ierr); 1274c9036c7SBarry Smith } 12878fc6b22SHong Zhang */ 1299b54502bSHong Zhang ierr = PetscOptionsTail();CHKERRQ(ierr); 1309b54502bSHong Zhang PetscFunctionReturn(0); 1319b54502bSHong Zhang } 1329b54502bSHong Zhang 1339b54502bSHong Zhang static PetscErrorCode PCView_ICC(PC pc,PetscViewer viewer) 1349b54502bSHong Zhang { 1359b54502bSHong Zhang PetscErrorCode ierr; 1369b54502bSHong Zhang 1379b54502bSHong Zhang PetscFunctionBegin; 138914a5d51SHong Zhang ierr = PCView_Factor(pc,viewer);CHKERRQ(ierr); 1399b54502bSHong Zhang PetscFunctionReturn(0); 1409b54502bSHong Zhang } 1419b54502bSHong Zhang 1427087cfbeSBarry Smith extern PetscErrorCode PCFactorSetDropTolerance_ILU(PC,PetscReal,PetscReal,PetscInt); 1434c9036c7SBarry Smith 1449b54502bSHong Zhang /*MC 1459b54502bSHong Zhang PCICC - Incomplete Cholesky factorization preconditioners. 1469b54502bSHong Zhang 1479b54502bSHong Zhang Options Database Keys: 1482401956bSBarry Smith + -pc_factor_levels <k> - number of levels of fill for ICC(k) 1492401956bSBarry Smith . -pc_factor_in_place - only for ICC(0) with natural ordering, reuses the space of the matrix for 1509b54502bSHong Zhang its factorization (overwrites original matrix) 15155ba2a51SBarry Smith . -pc_factor_fill <nfill> - expected amount of fill in factored matrix compared to original matrix, nfill > 1 152145b9266SHong Zhang - -pc_factor_mat_ordering_type <natural,nd,1wd,rcm,qmd> - set the row/column ordering of the factored matrix 1539b54502bSHong Zhang 1549b54502bSHong Zhang Level: beginner 1559b54502bSHong Zhang 1569b54502bSHong Zhang Concepts: incomplete Cholesky factorization 1579b54502bSHong Zhang 158*95452b02SPatrick Sanan Notes: 159*95452b02SPatrick Sanan Only implemented for some matrix formats. Not implemented in parallel. 1609b54502bSHong Zhang 1619b54502bSHong Zhang For BAIJ matrices this implements a point block ICC. 1629b54502bSHong Zhang 1639b54502bSHong Zhang The Manteuffel shift is only implemented for matrices with block size 1 1649b54502bSHong Zhang 16514d2772eSHong Zhang By default, the Manteuffel is applied (for matrices with block size 1). Call PCFactorSetShiftType(pc,MAT_SHIFT_POSITIVE_DEFINITE); 1669b54502bSHong Zhang to turn off the shift. 1679b54502bSHong Zhang 168c582cd25SBarry Smith References: 16996a0c994SBarry Smith . 1. - TONY F. CHAN AND HENK A. VAN DER VORST, Review article: APPROXIMATE AND INCOMPLETE FACTORIZATIONS, 17096a0c994SBarry Smith Chapter in Parallel Numerical Algorithms, edited by D. Keyes, A. Semah, V. Venkatakrishnan, ICASE/LaRC Interdisciplinary Series in 17196a0c994SBarry Smith Science and Engineering, Kluwer. 172c582cd25SBarry Smith 1739b54502bSHong Zhang 1749b54502bSHong Zhang .seealso: PCCreate(), PCSetType(), PCType (for list of available types), PC, PCSOR, MatOrderingType, 17581f96dccSHong Zhang PCFactorSetZeroPivot(), PCFactorSetShiftType(), PCFactorSetShiftAmount(), 176e5a9bf91SBarry Smith PCFactorSetFill(), PCFactorSetMatOrderingType(), PCFactorSetReuseOrdering(), 1778ff23777SHong Zhang PCFactorSetLevels() 1789b54502bSHong Zhang 1799b54502bSHong Zhang M*/ 1809b54502bSHong Zhang 1818cc058d9SJed Brown PETSC_EXTERN PetscErrorCode PCCreate_ICC(PC pc) 1829b54502bSHong Zhang { 1839b54502bSHong Zhang PetscErrorCode ierr; 1849b54502bSHong Zhang PC_ICC *icc; 1859b54502bSHong Zhang 1869b54502bSHong Zhang PetscFunctionBegin; 187b00a9115SJed Brown ierr = PetscNewLog(pc,&icc);CHKERRQ(ierr); 1883d1c1ea0SBarry Smith pc->data = (void*)icc; 1893d1c1ea0SBarry Smith ierr = PCFactorInitialize(pc);CHKERRQ(ierr); 19019fd82e9SBarry Smith ierr = PetscStrallocpy(MATORDERINGNATURAL,(char**)&((PC_Factor*)icc)->ordering);CHKERRQ(ierr); 1912fa5cd67SKarl Rupp 192879e8a4dSBarry Smith ((PC_Factor*)icc)->factortype = MAT_FACTOR_ICC; 193075768bcSBarry Smith ((PC_Factor*)icc)->info.fill = 1.0; 194075768bcSBarry Smith ((PC_Factor*)icc)->info.dtcol = PETSC_DEFAULT; 195f4db908eSBarry Smith ((PC_Factor*)icc)->info.shifttype = (PetscReal) MAT_SHIFT_POSITIVE_DEFINITE; 1969b54502bSHong Zhang 1979b54502bSHong Zhang pc->ops->apply = PCApply_ICC; 198d674540eSJed Brown pc->ops->applytranspose = PCApply_ICC; 1994cccfbddSHong Zhang pc->ops->setup = PCSetUp_ICC; 200574deadeSBarry Smith pc->ops->reset = PCReset_ICC; 2019b54502bSHong Zhang pc->ops->destroy = PCDestroy_ICC; 2029b54502bSHong Zhang pc->ops->setfromoptions = PCSetFromOptions_ICC; 2039b54502bSHong Zhang pc->ops->view = PCView_ICC; 2049b54502bSHong Zhang pc->ops->applysymmetricleft = PCApplySymmetricLeft_ICC; 2059b54502bSHong Zhang pc->ops->applysymmetricright = PCApplySymmetricRight_ICC; 2069b54502bSHong Zhang PetscFunctionReturn(0); 2079b54502bSHong Zhang } 2089b54502bSHong Zhang 2099b54502bSHong Zhang 210