xref: /petsc/src/ksp/pc/impls/gamg/agg.c (revision 11e456e13129ef92940db30c75583eb122d1f227)
12e68589bSMark F. Adams /*
22e68589bSMark F. Adams  GAMG geometric-algebric multiogrid PC - Mark Adams 2011
32e68589bSMark F. Adams  */
42e68589bSMark F. Adams 
52e68589bSMark F. Adams #include <../src/ksp/pc/impls/gamg/gamg.h>        /*I "petscpc.h" I*/
6b45d2f2cSJed Brown #include <petsc-private/kspimpl.h>
72e68589bSMark F. Adams 
82e68589bSMark F. Adams #include <petscblaslapack.h>
92e68589bSMark F. Adams 
102e68589bSMark F. Adams typedef struct {
11c8b0795cSMark F. Adams   PetscInt  nsmooths;
12c8b0795cSMark F. Adams   PetscBool sym_graph;
13ef4ad70eSMark F. Adams   PetscBool square_graph;
142e68589bSMark F. Adams } PC_GAMG_AGG;
152e68589bSMark F. Adams 
162e68589bSMark F. Adams #undef __FUNCT__
172e68589bSMark F. Adams #define __FUNCT__ "PCGAMGSetNSmooths"
182e68589bSMark F. Adams /*@
192e68589bSMark F. Adams    PCGAMGSetNSmooths - Set number of smoothing steps (1 is typical)
202e68589bSMark F. Adams 
212e68589bSMark F. Adams    Not Collective on PC
222e68589bSMark F. Adams 
232e68589bSMark F. Adams    Input Parameters:
242e68589bSMark F. Adams .  pc - the preconditioner context
252e68589bSMark F. Adams 
262e68589bSMark F. Adams    Options Database Key:
272e68589bSMark F. Adams .  -pc_gamg_agg_nsmooths
282e68589bSMark F. Adams 
292e68589bSMark F. Adams    Level: intermediate
302e68589bSMark F. Adams 
312e68589bSMark F. Adams    Concepts: Aggregation AMG preconditioner
322e68589bSMark F. Adams 
332e68589bSMark F. Adams .seealso: ()
342e68589bSMark F. Adams @*/
352e68589bSMark F. Adams PetscErrorCode PCGAMGSetNSmooths(PC pc, PetscInt n)
362e68589bSMark F. Adams {
372e68589bSMark F. Adams   PetscErrorCode ierr;
382e68589bSMark F. Adams 
392e68589bSMark F. Adams   PetscFunctionBegin;
402e68589bSMark F. Adams   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
412e68589bSMark F. Adams   ierr = PetscTryMethod(pc,"PCGAMGSetNSmooths_C",(PC,PetscInt),(pc,n));CHKERRQ(ierr);
422e68589bSMark F. Adams   PetscFunctionReturn(0);
432e68589bSMark F. Adams }
442e68589bSMark F. Adams 
452e68589bSMark F. Adams #undef __FUNCT__
462e68589bSMark F. Adams #define __FUNCT__ "PCGAMGSetNSmooths_GAMG"
472e68589bSMark F. Adams PetscErrorCode PCGAMGSetNSmooths_GAMG(PC pc, PetscInt n)
482e68589bSMark F. Adams {
492e68589bSMark F. Adams   PC_MG       *mg          = (PC_MG*)pc->data;
502e68589bSMark F. Adams   PC_GAMG     *pc_gamg     = (PC_GAMG*)mg->innerctx;
51c8b0795cSMark F. Adams   PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx;
522e68589bSMark F. Adams 
532e68589bSMark F. Adams   PetscFunctionBegin;
54c8b0795cSMark F. Adams   pc_gamg_agg->nsmooths = n;
55c8b0795cSMark F. Adams   PetscFunctionReturn(0);
56c8b0795cSMark F. Adams }
57c8b0795cSMark F. Adams 
58c8b0795cSMark F. Adams #undef __FUNCT__
59c8b0795cSMark F. Adams #define __FUNCT__ "PCGAMGSetSymGraph"
60c8b0795cSMark F. Adams /*@
61c8b0795cSMark F. Adams    PCGAMGSetSymGraph -
62c8b0795cSMark F. Adams 
63c8b0795cSMark F. Adams    Not Collective on PC
64c8b0795cSMark F. Adams 
65c8b0795cSMark F. Adams    Input Parameters:
66c8b0795cSMark F. Adams .  pc - the preconditioner context
67c8b0795cSMark F. Adams 
68c8b0795cSMark F. Adams    Options Database Key:
69c8b0795cSMark F. Adams .  -pc_gamg_sym_graph
70c8b0795cSMark F. Adams 
71c8b0795cSMark F. Adams    Level: intermediate
72c8b0795cSMark F. Adams 
73c8b0795cSMark F. Adams    Concepts: Aggregation AMG preconditioner
74c8b0795cSMark F. Adams 
75c8b0795cSMark F. Adams .seealso: ()
76c8b0795cSMark F. Adams @*/
77c8b0795cSMark F. Adams PetscErrorCode PCGAMGSetSymGraph(PC pc, PetscBool n)
78c8b0795cSMark F. Adams {
79c8b0795cSMark F. Adams   PetscErrorCode ierr;
80c8b0795cSMark F. Adams 
81c8b0795cSMark F. Adams   PetscFunctionBegin;
82c8b0795cSMark F. Adams   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
83c8b0795cSMark F. Adams   ierr = PetscTryMethod(pc,"PCGAMGSetSymGraph_C",(PC,PetscBool),(pc,n));CHKERRQ(ierr);
84c8b0795cSMark F. Adams   PetscFunctionReturn(0);
85c8b0795cSMark F. Adams }
86c8b0795cSMark F. Adams 
87c8b0795cSMark F. Adams #undef __FUNCT__
88c8b0795cSMark F. Adams #define __FUNCT__ "PCGAMGSetSymGraph_GAMG"
89c8b0795cSMark F. Adams PetscErrorCode PCGAMGSetSymGraph_GAMG(PC pc, PetscBool n)
90c8b0795cSMark F. Adams {
91c8b0795cSMark F. Adams   PC_MG       *mg          = (PC_MG*)pc->data;
92c8b0795cSMark F. Adams   PC_GAMG     *pc_gamg     = (PC_GAMG*)mg->innerctx;
93c8b0795cSMark F. Adams   PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx;
94c8b0795cSMark F. Adams 
95c8b0795cSMark F. Adams   PetscFunctionBegin;
96c8b0795cSMark F. Adams   pc_gamg_agg->sym_graph = n;
972e68589bSMark F. Adams   PetscFunctionReturn(0);
982e68589bSMark F. Adams }
992e68589bSMark F. Adams 
100ef4ad70eSMark F. Adams #undef __FUNCT__
101ef4ad70eSMark F. Adams #define __FUNCT__ "PCGAMGSetSquareGraph"
102ef4ad70eSMark F. Adams /*@
103ef4ad70eSMark F. Adams    PCGAMGSetSquareGraph -
104ef4ad70eSMark F. Adams 
105ef4ad70eSMark F. Adams    Not Collective on PC
106ef4ad70eSMark F. Adams 
107ef4ad70eSMark F. Adams    Input Parameters:
108ef4ad70eSMark F. Adams .  pc - the preconditioner context
109ef4ad70eSMark F. Adams 
110ef4ad70eSMark F. Adams    Options Database Key:
111ef4ad70eSMark F. Adams .  -pc_gamg_square_graph
112ef4ad70eSMark F. Adams 
113ef4ad70eSMark F. Adams    Level: intermediate
114ef4ad70eSMark F. Adams 
115ef4ad70eSMark F. Adams    Concepts: Aggregation AMG preconditioner
116ef4ad70eSMark F. Adams 
117ef4ad70eSMark F. Adams .seealso: ()
118ef4ad70eSMark F. Adams @*/
119ef4ad70eSMark F. Adams PetscErrorCode PCGAMGSetSquareGraph(PC pc, PetscBool n)
120ef4ad70eSMark F. Adams {
121ef4ad70eSMark F. Adams   PetscErrorCode ierr;
122ef4ad70eSMark F. Adams 
123ef4ad70eSMark F. Adams   PetscFunctionBegin;
124ef4ad70eSMark F. Adams   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
125ef4ad70eSMark F. Adams   ierr = PetscTryMethod(pc,"PCGAMGSetSquareGraph_C",(PC,PetscBool),(pc,n));CHKERRQ(ierr);
126ef4ad70eSMark F. Adams   PetscFunctionReturn(0);
127ef4ad70eSMark F. Adams }
128ef4ad70eSMark F. Adams 
129ef4ad70eSMark F. Adams #undef __FUNCT__
130ef4ad70eSMark F. Adams #define __FUNCT__ "PCGAMGSetSquareGraph_GAMG"
131ef4ad70eSMark F. Adams PetscErrorCode PCGAMGSetSquareGraph_GAMG(PC pc, PetscBool n)
132ef4ad70eSMark F. Adams {
133ef4ad70eSMark F. Adams   PC_MG       *mg          = (PC_MG*)pc->data;
134ef4ad70eSMark F. Adams   PC_GAMG     *pc_gamg     = (PC_GAMG*)mg->innerctx;
135ef4ad70eSMark F. Adams   PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx;
136ef4ad70eSMark F. Adams 
137ef4ad70eSMark F. Adams   PetscFunctionBegin;
138ef4ad70eSMark F. Adams   pc_gamg_agg->square_graph = n;
139ef4ad70eSMark F. Adams   PetscFunctionReturn(0);
140ef4ad70eSMark F. Adams }
141ef4ad70eSMark F. Adams 
1422e68589bSMark F. Adams /* -------------------------------------------------------------------------- */
1432e68589bSMark F. Adams /*
1442e68589bSMark F. Adams    PCSetFromOptions_GAMG_AGG
1452e68589bSMark F. Adams 
1462e68589bSMark F. Adams   Input Parameter:
1472e68589bSMark F. Adams    . pc -
1482e68589bSMark F. Adams */
1492e68589bSMark F. Adams #undef __FUNCT__
1502e68589bSMark F. Adams #define __FUNCT__ "PCSetFromOptions_GAMG_AGG"
1512e68589bSMark F. Adams PetscErrorCode PCSetFromOptions_GAMG_AGG(PC pc)
1522e68589bSMark F. Adams {
1532e68589bSMark F. Adams   PetscErrorCode ierr;
1542e68589bSMark F. Adams   PC_MG          *mg          = (PC_MG*)pc->data;
1552e68589bSMark F. Adams   PC_GAMG        *pc_gamg     = (PC_GAMG*)mg->innerctx;
156c8b0795cSMark F. Adams   PC_GAMG_AGG    *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx;
1572e68589bSMark F. Adams   PetscBool      flag;
1582e68589bSMark F. Adams 
1592e68589bSMark F. Adams   PetscFunctionBegin;
1602e68589bSMark F. Adams 
1612e68589bSMark F. Adams   ierr = PetscOptionsHead("GAMG-AGG options");CHKERRQ(ierr);
1622e68589bSMark F. Adams   {
1632e68589bSMark F. Adams     /* -pc_gamg_agg_nsmooths */
164d3042614SMark Adams     pc_gamg_agg->nsmooths = 1;
1652fa5cd67SKarl Rupp 
1662e68589bSMark F. Adams     ierr = PetscOptionsInt("-pc_gamg_agg_nsmooths",
1672e68589bSMark F. Adams                            "smoothing steps for smoothed aggregation, usually 1 (0)",
1682e68589bSMark F. Adams                            "PCGAMGSetNSmooths",
169c8b0795cSMark F. Adams                            pc_gamg_agg->nsmooths,
170c8b0795cSMark F. Adams                            &pc_gamg_agg->nsmooths,
171806fa848SBarry Smith                            &flag);CHKERRQ(ierr);
172c8b0795cSMark F. Adams 
173c8b0795cSMark F. Adams     /* -pc_gamg_sym_graph */
174c8b0795cSMark F. Adams     pc_gamg_agg->sym_graph = PETSC_FALSE;
1752fa5cd67SKarl Rupp 
176c8b0795cSMark F. Adams     ierr = PetscOptionsBool("-pc_gamg_sym_graph",
177581a99e3SJed Brown                             "Set for asymmetric matrices",
178c8b0795cSMark F. Adams                             "PCGAMGSetSymGraph",
179c8b0795cSMark F. Adams                             pc_gamg_agg->sym_graph,
180c8b0795cSMark F. Adams                             &pc_gamg_agg->sym_graph,
181806fa848SBarry Smith                             &flag);CHKERRQ(ierr);
182ef4ad70eSMark F. Adams 
183ef4ad70eSMark F. Adams     /* -pc_gamg_square_graph */
184ef4ad70eSMark F. Adams     pc_gamg_agg->square_graph = PETSC_TRUE;
1852fa5cd67SKarl Rupp 
186ef4ad70eSMark F. Adams     ierr = PetscOptionsBool("-pc_gamg_square_graph",
1870cbbd2e1SMark F. Adams                             "For faster coarsening and lower coarse grid complexity",
188ef4ad70eSMark F. Adams                             "PCGAMGSetSquareGraph",
189ef4ad70eSMark F. Adams                             pc_gamg_agg->square_graph,
190ef4ad70eSMark F. Adams                             &pc_gamg_agg->square_graph,
191806fa848SBarry Smith                             &flag);CHKERRQ(ierr);
1922e68589bSMark F. Adams   }
1932e68589bSMark F. Adams   ierr = PetscOptionsTail();CHKERRQ(ierr);
1942e68589bSMark F. Adams   PetscFunctionReturn(0);
1952e68589bSMark F. Adams }
1962e68589bSMark F. Adams 
1972e68589bSMark F. Adams /* -------------------------------------------------------------------------- */
1982e68589bSMark F. Adams /*
1992e68589bSMark F. Adams    PCDestroy_AGG
2002e68589bSMark F. Adams 
2012e68589bSMark F. Adams   Input Parameter:
2022e68589bSMark F. Adams    . pc -
2032e68589bSMark F. Adams */
2042e68589bSMark F. Adams #undef __FUNCT__
2059b8ffb57SJed Brown #define __FUNCT__ "PCDestroy_GAMG_AGG"
2069b8ffb57SJed Brown PetscErrorCode PCDestroy_GAMG_AGG(PC pc)
2072e68589bSMark F. Adams {
2082e68589bSMark F. Adams   PetscErrorCode ierr;
2092e68589bSMark F. Adams   PC_MG          *mg          = (PC_MG*)pc->data;
2102e68589bSMark F. Adams   PC_GAMG        *pc_gamg     = (PC_GAMG*)mg->innerctx;
2112e68589bSMark F. Adams 
2122e68589bSMark F. Adams   PetscFunctionBegin;
2139b8ffb57SJed Brown   ierr = PetscFree(pc_gamg->subctx);CHKERRQ(ierr);
2142e68589bSMark F. Adams   PetscFunctionReturn(0);
2152e68589bSMark F. Adams }
2162e68589bSMark F. Adams 
2172e68589bSMark F. Adams /* -------------------------------------------------------------------------- */
2182e68589bSMark F. Adams /*
2192e68589bSMark F. Adams    PCSetCoordinates_AGG
220302f38e8SMark F. Adams      - collective
2212e68589bSMark F. Adams 
2222e68589bSMark F. Adams    Input Parameter:
2232e68589bSMark F. Adams    . pc - the preconditioner context
224a2f3521dSMark F. Adams    . ndm - dimesion of data (used for dof/vertex for Stokes)
225302f38e8SMark F. Adams    . a_nloc - number of vertices local
226302f38e8SMark F. Adams    . coords - [a_nloc][ndm] - interleaved coordinate data: {x_0, y_0, z_0, x_1, y_1, ...}
2272e68589bSMark F. Adams */
2281e6b0712SBarry Smith 
2292e68589bSMark F. Adams #undef __FUNCT__
2302e68589bSMark F. Adams #define __FUNCT__ "PCSetCoordinates_AGG"
2311e6b0712SBarry Smith static PetscErrorCode PCSetCoordinates_AGG(PC pc, PetscInt ndm, PetscInt a_nloc, PetscReal *coords)
2322e68589bSMark F. Adams {
2332e68589bSMark F. Adams   PC_MG          *mg      = (PC_MG*)pc->data;
2342e68589bSMark F. Adams   PC_GAMG        *pc_gamg = (PC_GAMG*)mg->innerctx;
2352e68589bSMark F. Adams   PetscErrorCode ierr;
23669344418SMark F. Adams   PetscInt       arrsz,kk,ii,jj,nloc,ndatarows,ndf;
237a2f3521dSMark F. Adams   Mat            mat = pc->pmat;
2382e68589bSMark F. Adams 
2392e68589bSMark F. Adams   PetscFunctionBegin;
240a2f3521dSMark F. Adams   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
241a2f3521dSMark F. Adams   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
242302f38e8SMark F. Adams   nloc = a_nloc;
2432e68589bSMark F. Adams 
2442e68589bSMark F. Adams   /* SA: null space vectors */
24569344418SMark F. Adams   ierr = MatGetBlockSize(mat, &ndf);CHKERRQ(ierr); /* this does not work for Stokes */
24669344418SMark F. Adams   if (coords && ndf==1) pc_gamg->data_cell_cols = 1; /* scalar w/ coords and SA (not needed) */
247a2f3521dSMark F. Adams   else if (coords) {
248c666adbfSMark F. Adams     if (ndm > ndf) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"degrees of motion %d > block size %d",ndm,ndf);
24969344418SMark F. Adams     pc_gamg->data_cell_cols = (ndm==2 ? 3 : 6); /* displacement elasticity */
25069344418SMark F. Adams     if (ndm != ndf) {
251c666adbfSMark F. Adams       if (pc_gamg->data_cell_cols != ndf) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Don't know how to create null space for ndm=%d, ndf=%d.  Use MatSetNearNullSpace.",ndm,ndf);
252a2f3521dSMark F. Adams     }
253806fa848SBarry Smith   } else pc_gamg->data_cell_cols = ndf; /* no data, force SA with constant null space vectors */
25471959b99SBarry Smith   pc_gamg->data_cell_rows = ndatarows = ndf;
25571959b99SBarry Smith   if (pc_gamg->data_cell_cols <= 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"pc_gamg->data_cell_cols %D <= 0",pc_gamg->data_cell_cols);
256c8b0795cSMark F. Adams   arrsz = nloc*pc_gamg->data_cell_rows*pc_gamg->data_cell_cols;
2572e68589bSMark F. Adams 
2582e68589bSMark F. Adams   /* create data - syntactic sugar that should be refactored at some point */
2592e68589bSMark F. Adams   if (pc_gamg->data==0 || (pc_gamg->data_sz != arrsz)) {
2602e68589bSMark F. Adams     ierr = PetscFree(pc_gamg->data);CHKERRQ(ierr);
261302f38e8SMark F. Adams     ierr = PetscMalloc((arrsz+1)*sizeof(PetscReal), &pc_gamg->data);CHKERRQ(ierr);
2622e68589bSMark F. Adams   }
2632e68589bSMark F. Adams   /* copy data in - column oriented */
2642e68589bSMark F. Adams   for (kk=0; kk<nloc; kk++) {
26569344418SMark F. Adams     const PetscInt M     = nloc*pc_gamg->data_cell_rows; /* stride into data */
26669344418SMark F. Adams     PetscReal      *data = &pc_gamg->data[kk*ndatarows]; /* start of cell */
267c8b0795cSMark F. Adams     if (pc_gamg->data_cell_cols==1) *data = 1.0;
2682e68589bSMark F. Adams     else {
26969344418SMark F. Adams       /* translational modes */
2702fa5cd67SKarl Rupp       for (ii=0;ii<ndatarows;ii++) {
2712fa5cd67SKarl Rupp         for (jj=0;jj<ndatarows;jj++) {
27269344418SMark F. Adams           if (ii==jj)data[ii*M + jj] = 1.0;
2732e68589bSMark F. Adams           else data[ii*M + jj] = 0.0;
2742fa5cd67SKarl Rupp         }
2752fa5cd67SKarl Rupp       }
27669344418SMark F. Adams 
27769344418SMark F. Adams       /* rotational modes */
2782e68589bSMark F. Adams       if (coords) {
27969344418SMark F. Adams         if (ndm == 2) {
2802e68589bSMark F. Adams           data   += 2*M;
2812e68589bSMark F. Adams           data[0] = -coords[2*kk+1];
2822e68589bSMark F. Adams           data[1] =  coords[2*kk];
283806fa848SBarry Smith         } else {
2842e68589bSMark F. Adams           data   += 3*M;
2852e68589bSMark F. Adams           data[0] = 0.0;             data[M+0] =  coords[3*kk+2]; data[2*M+0] = -coords[3*kk+1];
2862e68589bSMark F. Adams           data[1] = -coords[3*kk+2]; data[M+1] = 0.0;             data[2*M+1] =  coords[3*kk];
2872e68589bSMark F. Adams           data[2] =  coords[3*kk+1]; data[M+2] = -coords[3*kk];   data[2*M+2] = 0.0;
2882e68589bSMark F. Adams         }
2892e68589bSMark F. Adams       }
2902e68589bSMark F. Adams     }
2912e68589bSMark F. Adams   }
2922e68589bSMark F. Adams 
2932e68589bSMark F. Adams   pc_gamg->data_sz = arrsz;
2942e68589bSMark F. Adams   PetscFunctionReturn(0);
2952e68589bSMark F. Adams }
2962e68589bSMark F. Adams 
297b43b03e9SMark F. Adams typedef PetscInt NState;
298b43b03e9SMark F. Adams static const NState NOT_DONE=-2;
299b43b03e9SMark F. Adams static const NState DELETED =-1;
300b43b03e9SMark F. Adams static const NState REMOVED =-3;
301b43b03e9SMark F. Adams #define IS_SELECTED(s) (s!=DELETED && s!=NOT_DONE && s!=REMOVED)
302b43b03e9SMark F. Adams 
303c8b0795cSMark F. Adams /* -------------------------------------------------------------------------- */
304c8b0795cSMark F. Adams /*
305b43b03e9SMark F. Adams    smoothAggs - greedy grab of with G1 (unsquared graph) -- AIJ specific
306b43b03e9SMark F. Adams      - AGG-MG specific: clears singletons out of 'selected_2'
307c8b0795cSMark F. Adams 
308c8b0795cSMark F. Adams    Input Parameter:
309c8b0795cSMark F. Adams    . Gmat_2 - glabal matrix of graph (data not defined)
310c8b0795cSMark F. Adams    . Gmat_1 - base graph to grab with
311c8b0795cSMark F. Adams    Input/Output Parameter:
3120cbbd2e1SMark F. Adams    . aggs_2 - linked list of aggs with gids)
313c8b0795cSMark F. Adams */
314c8b0795cSMark F. Adams #undef __FUNCT__
315c8b0795cSMark F. Adams #define __FUNCT__ "smoothAggs"
3160cbbd2e1SMark F. Adams static PetscErrorCode smoothAggs(const Mat Gmat_2, /* base (squared) graph */
3170cbbd2e1SMark F. Adams                                  const Mat Gmat_1,  /* base graph */
3180cbbd2e1SMark F. Adams                                  /* const IS selected_2, [nselected local] selected vertices */
3191147fc2aSKarl Rupp                                  PetscCoarsenData *aggs_2)  /* [nselected local] global ID of aggregate */
320c8b0795cSMark F. Adams {
321c8b0795cSMark F. Adams   PetscErrorCode ierr;
322c8b0795cSMark F. Adams   PetscBool      isMPI;
323c8b0795cSMark F. Adams   Mat_SeqAIJ     *matA_1, *matB_1=0, *matA_2, *matB_2=0;
3243b4367a7SBarry Smith   MPI_Comm       comm;
325c5df96a5SBarry Smith   PetscMPIInt    rank,size;
3260cbbd2e1SMark F. Adams   PetscInt       lid,*ii,*idx,ix,Iend,my0,kk,n,j;
327c8b0795cSMark F. Adams   Mat_MPIAIJ     *mpimat_2 = 0, *mpimat_1=0;
328c8b0795cSMark F. Adams   const PetscInt nloc      = Gmat_2->rmap->n;
3290cbbd2e1SMark F. Adams   PetscScalar    *cpcol_1_state,*cpcol_2_state,*cpcol_2_par_orig,*lid_parent_gid;
3300cbbd2e1SMark F. Adams   PetscInt       *lid_cprowID_1;
331c8b0795cSMark F. Adams   NState         *lid_state;
3320cbbd2e1SMark F. Adams   Vec            ghost_par_orig2;
333c8b0795cSMark F. Adams 
334c8b0795cSMark F. Adams   PetscFunctionBegin;
3353b4367a7SBarry Smith   ierr = PetscObjectGetComm((PetscObject)Gmat_2,&comm);CHKERRQ(ierr);
3363b4367a7SBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
3373b4367a7SBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
338c8b0795cSMark F. Adams   ierr = MatGetOwnershipRange(Gmat_1,&my0,&Iend);CHKERRQ(ierr);
339c8b0795cSMark F. Adams 
3400cbbd2e1SMark F. Adams   if (PETSC_FALSE) {
341c8b0795cSMark F. Adams     PetscViewer viewer; char fname[32]; static int llev=0;
342c8b0795cSMark F. Adams     sprintf(fname,"Gmat2_%d.m",llev++);
3433b4367a7SBarry Smith     PetscViewerASCIIOpen(comm,fname,&viewer);
344c8b0795cSMark F. Adams     ierr = PetscViewerSetFormat(viewer, PETSC_VIEWER_ASCII_MATLAB);CHKERRQ(ierr);
345c8b0795cSMark F. Adams     ierr = MatView(Gmat_2, viewer);CHKERRQ(ierr);
346c8b0795cSMark F. Adams     ierr = PetscViewerDestroy(&viewer);
347c8b0795cSMark F. Adams   }
348c8b0795cSMark F. Adams 
349c8b0795cSMark F. Adams   /* get submatrices */
350251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)Gmat_1, MATMPIAIJ, &isMPI);CHKERRQ(ierr);
351c8b0795cSMark F. Adams   if (isMPI) {
352c8b0795cSMark F. Adams     /* grab matrix objects */
353c8b0795cSMark F. Adams     mpimat_2 = (Mat_MPIAIJ*)Gmat_2->data;
354c8b0795cSMark F. Adams     mpimat_1 = (Mat_MPIAIJ*)Gmat_1->data;
355c8b0795cSMark F. Adams     matA_1   = (Mat_SeqAIJ*)mpimat_1->A->data;
356c8b0795cSMark F. Adams     matB_1   = (Mat_SeqAIJ*)mpimat_1->B->data;
357c8b0795cSMark F. Adams     matA_2   = (Mat_SeqAIJ*)mpimat_2->A->data;
358c8b0795cSMark F. Adams     matB_2   = (Mat_SeqAIJ*)mpimat_2->B->data;
359c8b0795cSMark F. Adams 
360c8b0795cSMark F. Adams     /* force compressed row storage for B matrix in AuxMat */
361*11e456e1SBarry Smith     ierr = MatCheckCompressedRow(mpimat_1->B,matB_1->nonzerorowcnt,&matB_1->compressedrow,matB_1->i,Gmat_1->rmap->n,-1.0);CHKERRQ(ierr);
362c8b0795cSMark F. Adams 
363c8b0795cSMark F. Adams     ierr = PetscMalloc(nloc*sizeof(PetscInt), &lid_cprowID_1);CHKERRQ(ierr);
3640cbbd2e1SMark F. Adams     for (lid = 0; lid < nloc; lid++) lid_cprowID_1[lid] = -1;
365c8b0795cSMark F. Adams     for (ix=0; ix<matB_1->compressedrow.nrows; ix++) {
366c8b0795cSMark F. Adams       PetscInt lid = matB_1->compressedrow.rindex[ix];
367c8b0795cSMark F. Adams       lid_cprowID_1[lid] = ix;
368c8b0795cSMark F. Adams     }
369806fa848SBarry Smith   } else {
370c8b0795cSMark F. Adams     matA_1        = (Mat_SeqAIJ*)Gmat_1->data;
371c8b0795cSMark F. Adams     matA_2        = (Mat_SeqAIJ*)Gmat_2->data;
3720298fd71SBarry Smith     lid_cprowID_1 = NULL;
373c8b0795cSMark F. Adams   }
37471959b99SBarry Smith   if (!(matA_1 && !matA_1->compressedrow.use)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"!(matA_1 && !matA_1->compressedrow.use)");
37571959b99SBarry Smith   if (!(matB_1==0 || matB_1->compressedrow.use)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"!(matB_1==0 || matB_1->compressedrow.use)");
37671959b99SBarry Smith   if (!(matA_2 && !matA_2->compressedrow.use)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"!(matA_2 && !matA_2->compressedrow.use)");
37771959b99SBarry Smith   if (!(matB_2==0 || matB_2->compressedrow.use)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"!(matB_2==0 || matB_2->compressedrow.use)");
378c8b0795cSMark F. Adams 
379c8b0795cSMark F. Adams   /* get state of locals and selected gid for deleted */
380c8b0795cSMark F. Adams   ierr = PetscMalloc(nloc*sizeof(NState), &lid_state);CHKERRQ(ierr);
3810cbbd2e1SMark F. Adams   ierr = PetscMalloc(nloc*sizeof(PetscScalar), &lid_parent_gid);CHKERRQ(ierr);
382c8b0795cSMark F. Adams   for (lid = 0; lid < nloc; lid++) {
3830cbbd2e1SMark F. Adams     lid_parent_gid[lid] = -1.0;
384c8b0795cSMark F. Adams     lid_state[lid]      = DELETED;
385c8b0795cSMark F. Adams   }
3860cbbd2e1SMark F. Adams 
3870cbbd2e1SMark F. Adams   /* set lid_state */
3880cbbd2e1SMark F. Adams   for (lid = 0; lid < nloc; lid++) {
38941b27cdeSMark F. Adams     PetscCDPos pos;
390e78576d6SMark F. Adams     ierr = PetscCDGetHeadPos(aggs_2,lid,&pos);CHKERRQ(ierr);
391e78576d6SMark F. Adams     if (pos) {
392e78576d6SMark F. Adams       PetscInt gid1;
3932fa5cd67SKarl Rupp 
39471959b99SBarry Smith       ierr = PetscLLNGetID(pos, &gid1);CHKERRQ(ierr);
39571959b99SBarry Smith       if (gid1 != lid+my0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"gid1 %D != lid %D + my0 %D",gid1,lid,my0);
3960cbbd2e1SMark F. Adams       lid_state[lid] = gid1;
397b43b03e9SMark F. Adams     }
398b43b03e9SMark F. Adams   }
3990cbbd2e1SMark F. Adams 
4000cbbd2e1SMark F. Adams   /* map local to selected local, DELETED means a ghost owns it */
401c8b0795cSMark F. Adams   for (lid=kk=0; lid<nloc; lid++) {
402c8b0795cSMark F. Adams     NState state = lid_state[lid];
403c8b0795cSMark F. Adams     if (IS_SELECTED(state)) {
40441b27cdeSMark F. Adams       PetscCDPos pos;
405e78576d6SMark F. Adams       ierr = PetscCDGetHeadPos(aggs_2,lid,&pos);CHKERRQ(ierr);
406e78576d6SMark F. Adams       while (pos) {
407e78576d6SMark F. Adams         PetscInt gid1;
408ffc955d6SMark F. Adams         ierr = PetscLLNGetID(pos, &gid1);CHKERRQ(ierr);
409e78576d6SMark F. Adams         ierr = PetscCDGetNextPos(aggs_2,lid,&pos);CHKERRQ(ierr);
410e78576d6SMark F. Adams 
4112fa5cd67SKarl Rupp         if (gid1 >= my0 && gid1 < Iend) lid_parent_gid[gid1-my0] = (PetscScalar)(lid + my0);
412c8b0795cSMark F. Adams       }
4130cbbd2e1SMark F. Adams     }
4140cbbd2e1SMark F. Adams   }
4150cbbd2e1SMark F. Adams   /* get 'cpcol_1/2_state' & cpcol_2_par_orig - uses mpimat_1/2->lvec for temp space */
416c8b0795cSMark F. Adams   if (isMPI) {
417c8b0795cSMark F. Adams     Vec tempVec;
418c8b0795cSMark F. Adams     /* get 'cpcol_1_state' */
419c8b0795cSMark F. Adams     ierr = MatGetVecs(Gmat_1, &tempVec, 0);CHKERRQ(ierr);
420c8b0795cSMark F. Adams     for (kk=0,j=my0; kk<nloc; kk++,j++) {
421c8b0795cSMark F. Adams       PetscScalar v = (PetscScalar)lid_state[kk];
422c8b0795cSMark F. Adams       ierr = VecSetValues(tempVec, 1, &j, &v, INSERT_VALUES);CHKERRQ(ierr);
423c8b0795cSMark F. Adams     }
424c8b0795cSMark F. Adams     ierr = VecAssemblyBegin(tempVec);CHKERRQ(ierr);
425c8b0795cSMark F. Adams     ierr = VecAssemblyEnd(tempVec);CHKERRQ(ierr);
426806fa848SBarry Smith     ierr = VecScatterBegin(mpimat_1->Mvctx,tempVec, mpimat_1->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
427806fa848SBarry Smith     ierr =   VecScatterEnd(mpimat_1->Mvctx,tempVec, mpimat_1->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
428c8b0795cSMark F. Adams     ierr = VecGetArray(mpimat_1->lvec, &cpcol_1_state);CHKERRQ(ierr);
429c8b0795cSMark F. Adams     /* get 'cpcol_2_state' */
430806fa848SBarry Smith     ierr = VecScatterBegin(mpimat_2->Mvctx,tempVec, mpimat_2->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
431806fa848SBarry Smith     ierr =   VecScatterEnd(mpimat_2->Mvctx,tempVec, mpimat_2->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
432c8b0795cSMark F. Adams     ierr = VecGetArray(mpimat_2->lvec, &cpcol_2_state);CHKERRQ(ierr);
4330cbbd2e1SMark F. Adams     /* get 'cpcol_2_par_orig' */
4340cbbd2e1SMark F. Adams     for (kk=0,j=my0; kk<nloc; kk++,j++) {
4350cbbd2e1SMark F. Adams       PetscScalar v = (PetscScalar)lid_parent_gid[kk];
4360cbbd2e1SMark F. Adams       ierr = VecSetValues(tempVec, 1, &j, &v, INSERT_VALUES);CHKERRQ(ierr);
4370cbbd2e1SMark F. Adams     }
4380cbbd2e1SMark F. Adams     ierr = VecAssemblyBegin(tempVec);CHKERRQ(ierr);
4390cbbd2e1SMark F. Adams     ierr = VecAssemblyEnd(tempVec);CHKERRQ(ierr);
4400cbbd2e1SMark F. Adams     ierr = VecDuplicate(mpimat_2->lvec, &ghost_par_orig2);CHKERRQ(ierr);
441806fa848SBarry Smith     ierr = VecScatterBegin(mpimat_2->Mvctx,tempVec, ghost_par_orig2,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
442806fa848SBarry Smith     ierr =   VecScatterEnd(mpimat_2->Mvctx,tempVec, ghost_par_orig2,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
4430cbbd2e1SMark F. Adams     ierr = VecGetArray(ghost_par_orig2, &cpcol_2_par_orig);CHKERRQ(ierr);
4440cbbd2e1SMark F. Adams 
445c8b0795cSMark F. Adams     ierr = VecDestroy(&tempVec);CHKERRQ(ierr);
446c8b0795cSMark F. Adams   } /* ismpi */
447c8b0795cSMark F. Adams 
448c8b0795cSMark F. Adams   /* doit */
449c8b0795cSMark F. Adams   for (lid=0; lid<nloc; lid++) {
450c8b0795cSMark F. Adams     NState state = lid_state[lid];
4510cbbd2e1SMark F. Adams     if (IS_SELECTED(state)) {
4520cbbd2e1SMark F. Adams       /* steal locals */
453c8b0795cSMark F. Adams       ii  = matA_1->i; n = ii[lid+1] - ii[lid];
454c8b0795cSMark F. Adams       idx = matA_1->j + ii[lid];
455c8b0795cSMark F. Adams       for (j=0; j<n; j++) {
4560cbbd2e1SMark F. Adams         PetscInt lidj   = idx[j], sgid;
457c8b0795cSMark F. Adams         NState   statej = lid_state[lidj];
4580cbbd2e1SMark F. Adams         if (statej==DELETED && (sgid=(PetscInt)PetscRealPart(lid_parent_gid[lidj])) != lid+my0) { /* steal local */
4590cbbd2e1SMark F. Adams           lid_parent_gid[lidj] = (PetscScalar)(lid+my0); /* send this if sgid is not local */
4600cbbd2e1SMark F. Adams           if (sgid >= my0 && sgid < Iend) {       /* I'm stealing this local from a local sgid */
4610cbbd2e1SMark F. Adams             PetscInt   hav=0,slid=sgid-my0,gidj=lidj+my0;
4620298fd71SBarry Smith             PetscCDPos pos,last=NULL;
463c8b0795cSMark F. Adams             /* looking for local from local so id_llist_2 works */
464e78576d6SMark F. Adams             ierr = PetscCDGetHeadPos(aggs_2,slid,&pos);CHKERRQ(ierr);
465e78576d6SMark F. Adams             while (pos) {
466e78576d6SMark F. Adams               PetscInt gid;
467ffc955d6SMark F. Adams               ierr = PetscLLNGetID(pos, &gid);CHKERRQ(ierr);
4680cbbd2e1SMark F. Adams               if (gid == gidj) {
46971959b99SBarry Smith                 if (!last) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"last cannot be null");
47041b27cdeSMark F. Adams                 ierr = PetscCDRemoveNextNode(aggs_2, slid, last);CHKERRQ(ierr);
47141b27cdeSMark F. Adams                 ierr = PetscCDAppendNode(aggs_2, lid, pos);CHKERRQ(ierr);
4720cbbd2e1SMark F. Adams                 hav  = 1;
473c8b0795cSMark F. Adams                 break;
474806fa848SBarry Smith               } else last = pos;
475e78576d6SMark F. Adams 
476e78576d6SMark F. Adams               ierr = PetscCDGetNextPos(aggs_2,slid,&pos);CHKERRQ(ierr);
477c8b0795cSMark F. Adams             }
478c8b0795cSMark F. Adams             if (hav!=1) {
47971959b99SBarry Smith               if (!hav) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"failed to find adj in 'selected' lists - structurally unsymmetric matrix");
480c666adbfSMark F. Adams               SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"found node %d times???",hav);
481c8b0795cSMark F. Adams             }
482806fa848SBarry Smith           } else {            /* I'm stealing this local, owned by a ghost */
4832fa5cd67SKarl Rupp             if (sgid != -1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Have un-symmetric graph (apparently). Use '-pc_gamg_sym_graph true' to symetrize the graph or '-pc_gamg_threshold 0.0' if the matrix is structurally symmetric.");
48441b27cdeSMark F. Adams             ierr = PetscCDAppendID(aggs_2, lid, lidj+my0);CHKERRQ(ierr);
485c8b0795cSMark F. Adams           }
486c8b0795cSMark F. Adams         }
4870cbbd2e1SMark F. Adams       } /* local neighbors */
488806fa848SBarry Smith     } else if (state == DELETED && lid_cprowID_1) {
4890cbbd2e1SMark F. Adams       PetscInt sgidold = (PetscInt)PetscRealPart(lid_parent_gid[lid]);
490c8b0795cSMark F. Adams       /* see if I have a selected ghost neighbor that will steal me */
491c8b0795cSMark F. Adams       if ((ix=lid_cprowID_1[lid]) != -1) {
492c8b0795cSMark F. Adams         ii  = matB_1->compressedrow.i; n = ii[ix+1] - ii[ix];
493c8b0795cSMark F. Adams         idx = matB_1->j + ii[ix];
494c8b0795cSMark F. Adams         for (j=0; j<n; j++) {
495c8b0795cSMark F. Adams           PetscInt cpid   = idx[j];
496c8b0795cSMark F. Adams           NState   statej = (NState)PetscRealPart(cpcol_1_state[cpid]);
497c8b0795cSMark F. Adams           if (IS_SELECTED(statej) && sgidold != (PetscInt)statej) { /* ghost will steal this, remove from my list */
4980cbbd2e1SMark F. Adams             lid_parent_gid[lid] = (PetscScalar)statej; /* send who selected */
4990cbbd2e1SMark F. Adams             if (sgidold>=my0 && sgidold<Iend) { /* this was mine */
5000cbbd2e1SMark F. Adams               PetscInt   hav=0,oldslidj=sgidold-my0;
5010298fd71SBarry Smith               PetscCDPos pos,last=NULL;
5020cbbd2e1SMark F. Adams               /* remove from 'oldslidj' list */
503e78576d6SMark F. Adams               ierr = PetscCDGetHeadPos(aggs_2,oldslidj,&pos);CHKERRQ(ierr);
504e78576d6SMark F. Adams               while (pos) {
505e78576d6SMark F. Adams                 PetscInt gid;
506ffc955d6SMark F. Adams                 ierr = PetscLLNGetID(pos, &gid);CHKERRQ(ierr);
5070cbbd2e1SMark F. Adams                 if (lid+my0 == gid) {
5080cbbd2e1SMark F. Adams                   /* id_llist_2[lastid] = id_llist_2[flid];   /\* remove lid from oldslidj list *\/ */
50971959b99SBarry Smith                   if (!last) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"last cannot be null");
51041b27cdeSMark F. Adams                   ierr = PetscCDRemoveNextNode(aggs_2, oldslidj, last);CHKERRQ(ierr);
5110cbbd2e1SMark F. Adams                   /* ghost (PetscScalar)statej will add this later */
5120cbbd2e1SMark F. Adams                   hav = 1;
513c8b0795cSMark F. Adams                   break;
514806fa848SBarry Smith                 } else last = pos;
515e78576d6SMark F. Adams 
516e78576d6SMark F. Adams                 ierr = PetscCDGetNextPos(aggs_2,oldslidj,&pos);CHKERRQ(ierr);
517c8b0795cSMark F. Adams               }
518c8b0795cSMark F. Adams               if (hav!=1) {
519c666adbfSMark F. Adams                 if (hav==0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"failed to find adj in 'selected' lists - structurally unsymmetric matrix");
520c666adbfSMark F. Adams                 SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"found node %d times???",hav);
521c8b0795cSMark F. Adams               }
522806fa848SBarry Smith             } else {
5230cbbd2e1SMark F. Adams               /* ghosts remove this later */
5240cbbd2e1SMark F. Adams             }
525c8b0795cSMark F. Adams           }
526c8b0795cSMark F. Adams         }
527c8b0795cSMark F. Adams       }
528c8b0795cSMark F. Adams     } /* selected/deleted */
529c8b0795cSMark F. Adams   } /* node loop */
530c8b0795cSMark F. Adams 
531c8b0795cSMark F. Adams   if (isMPI) {
5320cbbd2e1SMark F. Adams     PetscScalar   *cpcol_2_parent,*cpcol_2_gid;
5330cbbd2e1SMark F. Adams     Vec           tempVec,ghostgids2,ghostparents2;
5340cbbd2e1SMark F. Adams     PetscInt      cpid,nghost_2;
5350cbbd2e1SMark F. Adams     GAMGHashTable gid_cpid;
536c8b0795cSMark F. Adams 
5370cbbd2e1SMark F. Adams     ierr = VecGetSize(mpimat_2->lvec, &nghost_2);CHKERRQ(ierr);
538c8b0795cSMark F. Adams     ierr = MatGetVecs(Gmat_2, &tempVec, 0);CHKERRQ(ierr);
5390cbbd2e1SMark F. Adams 
5400cbbd2e1SMark F. Adams     /* get 'cpcol_2_parent' */
541c8b0795cSMark F. Adams     for (kk=0,j=my0; kk<nloc; kk++,j++) {
5420cbbd2e1SMark F. Adams       ierr = VecSetValues(tempVec, 1, &j, &lid_parent_gid[kk], INSERT_VALUES);CHKERRQ(ierr);
543c8b0795cSMark F. Adams     }
544c8b0795cSMark F. Adams     ierr = VecAssemblyBegin(tempVec);CHKERRQ(ierr);
545c8b0795cSMark F. Adams     ierr = VecAssemblyEnd(tempVec);CHKERRQ(ierr);
5460cbbd2e1SMark F. Adams     ierr = VecDuplicate(mpimat_2->lvec, &ghostparents2);CHKERRQ(ierr);
547806fa848SBarry Smith     ierr = VecScatterBegin(mpimat_2->Mvctx,tempVec, ghostparents2,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
548806fa848SBarry Smith     ierr = VecScatterEnd(mpimat_2->Mvctx,tempVec, ghostparents2,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
5490cbbd2e1SMark F. Adams     ierr = VecGetArray(ghostparents2, &cpcol_2_parent);CHKERRQ(ierr);
5500cbbd2e1SMark F. Adams 
5510cbbd2e1SMark F. Adams     /* get 'cpcol_2_gid' */
5520cbbd2e1SMark F. Adams     for (kk=0,j=my0; kk<nloc; kk++,j++) {
5530cbbd2e1SMark F. Adams       PetscScalar v = (PetscScalar)j;
5540cbbd2e1SMark F. Adams       ierr = VecSetValues(tempVec, 1, &j, &v, INSERT_VALUES);CHKERRQ(ierr);
5550cbbd2e1SMark F. Adams     }
5560cbbd2e1SMark F. Adams     ierr = VecAssemblyBegin(tempVec);CHKERRQ(ierr);
5570cbbd2e1SMark F. Adams     ierr = VecAssemblyEnd(tempVec);CHKERRQ(ierr);
5580cbbd2e1SMark F. Adams     ierr = VecDuplicate(mpimat_2->lvec, &ghostgids2);CHKERRQ(ierr);
559806fa848SBarry Smith     ierr = VecScatterBegin(mpimat_2->Mvctx,tempVec, ghostgids2,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
560806fa848SBarry Smith     ierr =   VecScatterEnd(mpimat_2->Mvctx,tempVec, ghostgids2,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
5610cbbd2e1SMark F. Adams     ierr = VecGetArray(ghostgids2, &cpcol_2_gid);CHKERRQ(ierr);
5620cbbd2e1SMark F. Adams 
563c8b0795cSMark F. Adams     ierr = VecDestroy(&tempVec);CHKERRQ(ierr);
564c8b0795cSMark F. Adams 
5650cbbd2e1SMark F. Adams     /* look for deleted ghosts and add to table */
566f10ff945SMark F. Adams     ierr = GAMGTableCreate(2*nghost_2+1, &gid_cpid);CHKERRQ(ierr);
5670cbbd2e1SMark F. Adams     for (cpid = 0; cpid < nghost_2; cpid++) {
5680cbbd2e1SMark F. Adams       NState state = (NState)PetscRealPart(cpcol_2_state[cpid]);
5690cbbd2e1SMark F. Adams       if (state==DELETED) {
5700cbbd2e1SMark F. Adams         PetscInt sgid_new = (PetscInt)PetscRealPart(cpcol_2_parent[cpid]);
5710cbbd2e1SMark F. Adams         PetscInt sgid_old = (PetscInt)PetscRealPart(cpcol_2_par_orig[cpid]);
5720cbbd2e1SMark F. Adams         if (sgid_old == -1 && sgid_new != -1) {
5730cbbd2e1SMark F. Adams           PetscInt gid = (PetscInt)PetscRealPart(cpcol_2_gid[cpid]);
5740cbbd2e1SMark F. Adams           ierr = GAMGTableAdd(&gid_cpid, gid, cpid);CHKERRQ(ierr);
5750cbbd2e1SMark F. Adams         }
5760cbbd2e1SMark F. Adams       }
5770cbbd2e1SMark F. Adams     }
578c8b0795cSMark F. Adams 
5790cbbd2e1SMark F. Adams     /* look for deleted ghosts and see if they moved - remove it */
580c8b0795cSMark F. Adams     for (lid=0; lid<nloc; lid++) {
581c8b0795cSMark F. Adams       NState state = lid_state[lid];
582c8b0795cSMark F. Adams       if (IS_SELECTED(state)) {
5830298fd71SBarry Smith         PetscCDPos pos,last=NULL;
584c8b0795cSMark F. Adams         /* look for deleted ghosts and see if they moved */
585e78576d6SMark F. Adams         ierr = PetscCDGetHeadPos(aggs_2,lid,&pos);CHKERRQ(ierr);
586e78576d6SMark F. Adams         while (pos) {
587e78576d6SMark F. Adams           PetscInt gid;
588ffc955d6SMark F. Adams           ierr = PetscLLNGetID(pos, &gid);CHKERRQ(ierr);
589e78576d6SMark F. Adams 
5900cbbd2e1SMark F. Adams           if (gid < my0 || gid >= Iend) {
5910cbbd2e1SMark F. Adams             ierr = GAMGTableFind(&gid_cpid, gid, &cpid);CHKERRQ(ierr);
5920cbbd2e1SMark F. Adams             if (cpid != -1) {
5930cbbd2e1SMark F. Adams               /* a moved ghost - */
5940cbbd2e1SMark F. Adams               /* id_llist_2[lastid] = id_llist_2[flid];    /\* remove 'flid' from list *\/ */
59541b27cdeSMark F. Adams               ierr = PetscCDRemoveNextNode(aggs_2, lid, last);CHKERRQ(ierr);
596806fa848SBarry Smith             } else last = pos;
597806fa848SBarry Smith           } else last = pos;
598e78576d6SMark F. Adams 
599e78576d6SMark F. Adams           ierr = PetscCDGetNextPos(aggs_2,lid,&pos);CHKERRQ(ierr);
600c8b0795cSMark F. Adams         } /* loop over list of deleted */
601c8b0795cSMark F. Adams       } /* selected */
602c8b0795cSMark F. Adams     }
6030cbbd2e1SMark F. Adams     ierr = GAMGTableDestroy(&gid_cpid);CHKERRQ(ierr);
604c8b0795cSMark F. Adams 
6050cbbd2e1SMark F. Adams     /* look at ghosts, see if they changed - and it */
6060cbbd2e1SMark F. Adams     for (cpid = 0; cpid < nghost_2; cpid++) {
6070cbbd2e1SMark F. Adams       PetscInt sgid_new = (PetscInt)PetscRealPart(cpcol_2_parent[cpid]);
6080cbbd2e1SMark F. Adams       if (sgid_new >= my0 && sgid_new < Iend) { /* this is mine */
6090cbbd2e1SMark F. Adams         PetscInt   gid     = (PetscInt)PetscRealPart(cpcol_2_gid[cpid]);
6100cbbd2e1SMark F. Adams         PetscInt   slid_new=sgid_new-my0,hav=0;
61141b27cdeSMark F. Adams         PetscCDPos pos;
6120cbbd2e1SMark F. Adams         /* search for this gid to see if I have it */
613e78576d6SMark F. Adams         ierr = PetscCDGetHeadPos(aggs_2,slid_new,&pos);CHKERRQ(ierr);
614e78576d6SMark F. Adams         while (pos) {
615e78576d6SMark F. Adams           PetscInt gidj;
616ffc955d6SMark F. Adams           ierr = PetscLLNGetID(pos, &gidj);CHKERRQ(ierr);
617e78576d6SMark F. Adams           ierr = PetscCDGetNextPos(aggs_2,slid_new,&pos);CHKERRQ(ierr);
618e78576d6SMark F. Adams 
6190cbbd2e1SMark F. Adams           if (gidj == gid) { hav = 1; break; }
620c8b0795cSMark F. Adams         }
621c8b0795cSMark F. Adams         if (hav != 1) {
622ffc955d6SMark F. Adams           /* insert 'flidj' into head of llist */
62341b27cdeSMark F. Adams           ierr = PetscCDAppendID(aggs_2, slid_new, gid);CHKERRQ(ierr);
624c8b0795cSMark F. Adams         }
625c8b0795cSMark F. Adams       }
626c8b0795cSMark F. Adams     }
627c8b0795cSMark F. Adams 
6280cbbd2e1SMark F. Adams     ierr = VecRestoreArray(mpimat_1->lvec, &cpcol_1_state);CHKERRQ(ierr);
6290cbbd2e1SMark F. Adams     ierr = VecRestoreArray(mpimat_2->lvec, &cpcol_2_state);CHKERRQ(ierr);
6300cbbd2e1SMark F. Adams     ierr = VecRestoreArray(ghostparents2, &cpcol_2_parent);CHKERRQ(ierr);
6310cbbd2e1SMark F. Adams     ierr = VecRestoreArray(ghostgids2, &cpcol_2_gid);CHKERRQ(ierr);
632c8b0795cSMark F. Adams     ierr = PetscFree(lid_cprowID_1);CHKERRQ(ierr);
6330cbbd2e1SMark F. Adams     ierr = VecDestroy(&ghostgids2);CHKERRQ(ierr);
6340cbbd2e1SMark F. Adams     ierr = VecDestroy(&ghostparents2);CHKERRQ(ierr);
6350cbbd2e1SMark F. Adams     ierr = VecDestroy(&ghost_par_orig2);CHKERRQ(ierr);
636c8b0795cSMark F. Adams   }
637c8b0795cSMark F. Adams 
6380cbbd2e1SMark F. Adams   ierr = PetscFree(lid_parent_gid);CHKERRQ(ierr);
639c8b0795cSMark F. Adams   ierr = PetscFree(lid_state);CHKERRQ(ierr);
640c8b0795cSMark F. Adams   PetscFunctionReturn(0);
641c8b0795cSMark F. Adams }
6422e68589bSMark F. Adams 
6432e68589bSMark F. Adams /* -------------------------------------------------------------------------- */
6442e68589bSMark F. Adams /*
645a2f3521dSMark F. Adams    PCSetData_AGG - called if data is not set with PCSetCoordinates.
646a2f3521dSMark F. Adams       Looks in Mat for near null space.
647a2f3521dSMark F. Adams       Does not work for Stokes
6482e68589bSMark F. Adams 
6492e68589bSMark F. Adams   Input Parameter:
6502e68589bSMark F. Adams    . pc -
651a2f3521dSMark F. Adams    . a_A - matrix to get (near) null space out of.
6522e68589bSMark F. Adams */
6532e68589bSMark F. Adams #undef __FUNCT__
6542e68589bSMark F. Adams #define __FUNCT__ "PCSetData_AGG"
655b8cd405aSMark F. Adams PetscErrorCode PCSetData_AGG(PC pc, Mat a_A)
6562e68589bSMark F. Adams {
6572e68589bSMark F. Adams   PetscErrorCode ierr;
658b8cd405aSMark F. Adams   PC_MG          *mg      = (PC_MG*)pc->data;
659b8cd405aSMark F. Adams   PC_GAMG        *pc_gamg = (PC_GAMG*)mg->innerctx;
660b8cd405aSMark F. Adams   MatNullSpace   mnull;
661b8cd405aSMark F. Adams 
6622e68589bSMark F. Adams   PetscFunctionBegin;
663b8cd405aSMark F. Adams   ierr = MatGetNearNullSpace(a_A, &mnull);CHKERRQ(ierr);
664b8cd405aSMark F. Adams   if (!mnull) {
665a2f3521dSMark F. Adams     PetscInt bs,NN,MM;
6669d1b15c3SMark F. Adams     ierr = MatGetBlockSize(a_A, &bs);CHKERRQ(ierr);
66771959b99SBarry Smith     ierr = MatGetLocalSize(a_A, &MM, &NN);CHKERRQ(ierr);
66871959b99SBarry Smith     if (MM % bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"MM %D must be divisible by bs %D",MM,bs);
6690298fd71SBarry Smith     ierr = PCSetCoordinates_AGG(pc, bs, MM/bs, NULL);CHKERRQ(ierr);
670806fa848SBarry Smith   } else {
671b8cd405aSMark F. Adams     PetscReal *nullvec;
672b8cd405aSMark F. Adams     PetscBool has_const;
673b8cd405aSMark F. Adams     PetscInt  i,j,mlocal,nvec,bs;
674b8cd405aSMark F. Adams     const Vec *vecs; const PetscScalar *v;
6750298fd71SBarry Smith     ierr = MatGetLocalSize(a_A,&mlocal,NULL);CHKERRQ(ierr);
676b8cd405aSMark F. Adams     ierr = MatNullSpaceGetVecs(mnull, &has_const, &nvec, &vecs);CHKERRQ(ierr);
6778caf3d72SBarry Smith     ierr = PetscMalloc((nvec+!!has_const)*mlocal*sizeof(*nullvec),&nullvec);CHKERRQ(ierr);
678b8cd405aSMark F. Adams     if (has_const) for (i=0; i<mlocal; i++) nullvec[i] = 1.0;
679b8cd405aSMark F. Adams     for (i=0; i<nvec; i++) {
680b8cd405aSMark F. Adams       ierr = VecGetArrayRead(vecs[i],&v);CHKERRQ(ierr);
681b8cd405aSMark F. Adams       for (j=0; j<mlocal; j++) nullvec[(i+!!has_const)*mlocal + j] = PetscRealPart(v[j]);
682b8cd405aSMark F. Adams       ierr = VecRestoreArrayRead(vecs[i],&v);CHKERRQ(ierr);
683b8cd405aSMark F. Adams     }
684b8cd405aSMark F. Adams     pc_gamg->data           = nullvec;
685b8cd405aSMark F. Adams     pc_gamg->data_cell_cols = (nvec+!!has_const);
6862fa5cd67SKarl Rupp 
687a2f3521dSMark F. Adams     ierr = MatGetBlockSize(a_A, &bs);CHKERRQ(ierr); /* this does not work for Stokes */
6882fa5cd67SKarl Rupp 
689b8cd405aSMark F. Adams     pc_gamg->data_cell_rows = bs;
690b8cd405aSMark F. Adams   }
6912e68589bSMark F. Adams   PetscFunctionReturn(0);
6922e68589bSMark F. Adams }
6932e68589bSMark F. Adams 
6942e68589bSMark F. Adams /* -------------------------------------------------------------------------- */
6952e68589bSMark F. Adams /*
6962e68589bSMark F. Adams  formProl0
6972e68589bSMark F. Adams 
6982e68589bSMark F. Adams    Input Parameter:
6990cbbd2e1SMark F. Adams    . agg_llists - list of arrays with aggregates
7002e68589bSMark F. Adams    . bs - block size
7010cbbd2e1SMark F. Adams    . nSAvec - column bs of new P
7020cbbd2e1SMark F. Adams    . my0crs - global index of start of locals
7032e68589bSMark F. Adams    . data_stride - bs*(nloc nodes + ghost nodes)
7042e68589bSMark F. Adams    . data_in[data_stride*nSAvec] - local data on fine grid
7052e68589bSMark F. Adams    . flid_fgid[data_stride/bs] - make local to global IDs, includes ghosts in 'locals_llist'
7062e68589bSMark F. Adams   Output Parameter:
7072e68589bSMark F. Adams    . a_data_out - in with fine grid data (w/ghosts), out with coarse grid data
7082e68589bSMark F. Adams    . a_Prol - prolongation operator
7092e68589bSMark F. Adams */
7102e68589bSMark F. Adams #undef __FUNCT__
7112e68589bSMark F. Adams #define __FUNCT__ "formProl0"
7120cbbd2e1SMark F. Adams static PetscErrorCode formProl0(const PetscCoarsenData *agg_llists, /* list from selected vertices of aggregate unselected vertices */
7130cbbd2e1SMark F. Adams                                 const PetscInt bs,          /* (row) block size */
7140cbbd2e1SMark F. Adams                                 const PetscInt nSAvec,      /* column bs */
7150cbbd2e1SMark F. Adams                                 const PetscInt my0crs,      /* global index of start of locals */
7160cbbd2e1SMark F. Adams                                 const PetscInt data_stride, /* (nloc+nghost)*bs */
7170cbbd2e1SMark F. Adams                                 PetscReal      data_in[],   /* [data_stride][nSAvec] */
7180cbbd2e1SMark F. Adams                                 const PetscInt flid_fgid[], /* [data_stride/bs] */
7192e68589bSMark F. Adams                                 PetscReal **a_data_out,
7201147fc2aSKarl Rupp                                 Mat a_Prol) /* prolongation operator (output)*/
7212e68589bSMark F. Adams {
7222e68589bSMark F. Adams   PetscErrorCode ierr;
7230cbbd2e1SMark F. Adams   PetscInt       Istart,my0,Iend,nloc,clid,flid,aggID,kk,jj,ii,mm,ndone,nSelected,minsz,nghosts,out_data_stride;
7243b4367a7SBarry Smith   MPI_Comm       comm;
725c5df96a5SBarry Smith   PetscMPIInt    rank, size;
7262e68589bSMark F. Adams   PetscReal      *out_data;
72741b27cdeSMark F. Adams   PetscCDPos     pos;
7280cbbd2e1SMark F. Adams   GAMGHashTable  fgid_flid;
7290cbbd2e1SMark F. Adams 
730797e13b7SMark F. Adams /* #define OUT_AGGS */
731519f805aSKarl Rupp #if defined(OUT_AGGS)
7320298fd71SBarry Smith   static PetscInt llev = 0; char fname[32]; FILE *file = NULL; PetscInt pM;
7339057884aSMark F. Adams #endif
7342e68589bSMark F. Adams 
7352e68589bSMark F. Adams   PetscFunctionBegin;
7363b4367a7SBarry Smith   ierr = PetscObjectGetComm((PetscObject)a_Prol,&comm);CHKERRQ(ierr);
7373b4367a7SBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
7383b4367a7SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
7392e68589bSMark F. Adams   ierr = MatGetOwnershipRange(a_Prol, &Istart, &Iend);CHKERRQ(ierr);
74071959b99SBarry Smith   nloc = (Iend-Istart)/bs; my0 = Istart/bs;
74171959b99SBarry Smith   if ((Iend-Istart) % bs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Iend %D - Istart %d must be divisible by bs %D",Iend,Istart,bs);
7420cbbd2e1SMark F. Adams   Iend   /= bs;
7430cbbd2e1SMark F. Adams   nghosts = data_stride/bs - nloc;
7442e68589bSMark F. Adams 
745f10ff945SMark F. Adams   ierr = GAMGTableCreate(2*nghosts+1, &fgid_flid);CHKERRQ(ierr);
7460cbbd2e1SMark F. Adams   for (kk=0; kk<nghosts; kk++) {
7470cbbd2e1SMark F. Adams     ierr = GAMGTableAdd(&fgid_flid, flid_fgid[nloc+kk], nloc+kk);CHKERRQ(ierr);
7482e68589bSMark F. Adams   }
7492e68589bSMark F. Adams 
750519f805aSKarl Rupp #if defined(OUT_AGGS)
751c5df96a5SBarry Smith   sprintf(fname,"aggs_%d_%d.m",llev++,rank);
7522fa5cd67SKarl Rupp   if (llev==1) file = fopen(fname,"w");
7530cbbd2e1SMark F. Adams   MatGetSize(a_Prol, &pM, &jj);
7540cbbd2e1SMark F. Adams #endif
7550cbbd2e1SMark F. Adams 
7560cbbd2e1SMark F. Adams   /* count selected -- same as number of cols of P */
7570cbbd2e1SMark F. Adams   for (nSelected=mm=0; mm<nloc; mm++) {
758e78576d6SMark F. Adams     PetscBool ise;
759e78576d6SMark F. Adams     ierr = PetscCDEmptyAt(agg_llists, mm, &ise);CHKERRQ(ierr);
760e78576d6SMark F. Adams     if (!ise) nSelected++;
7610cbbd2e1SMark F. Adams   }
7620cbbd2e1SMark F. Adams   ierr = MatGetOwnershipRangeColumn(a_Prol, &ii, &jj);CHKERRQ(ierr);
76371959b99SBarry Smith   if ((ii/nSAvec) != my0crs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"ii %D /nSAvec %D  != my0crs %D",ii,nSAvec,my0crs);
76471959b99SBarry Smith   if (nSelected != (jj-ii)/nSAvec) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_PLIB,"nSelected %D != (jj %D - ii %D)/nSAvec %D",nSelected,jj,ii,nSAvec);
7650cbbd2e1SMark F. Adams 
7662e68589bSMark F. Adams   /* aloc space for coarse point data (output) */
7670cbbd2e1SMark F. Adams   out_data_stride = nSelected*nSAvec;
7682fa5cd67SKarl Rupp 
7690cbbd2e1SMark F. Adams   ierr = PetscMalloc(out_data_stride*nSAvec*sizeof(PetscReal), &out_data);CHKERRQ(ierr);
77033812677SSatish Balay   for (ii=0;ii<out_data_stride*nSAvec;ii++) out_data[ii]=PETSC_MAX_REAL;
7710cbbd2e1SMark F. Adams   *a_data_out = out_data; /* output - stride nSelected*nSAvec */
7722e68589bSMark F. Adams 
7732e68589bSMark F. Adams   /* find points and set prolongation */
774c8b0795cSMark F. Adams   minsz = 100;
7752e68589bSMark F. Adams   ndone = 0;
7760cbbd2e1SMark F. Adams   for (mm = clid = 0; mm < nloc; mm++) {
777e78576d6SMark F. Adams     ierr = PetscCDSizeAt(agg_llists, mm, &jj);CHKERRQ(ierr);
778e78576d6SMark F. Adams     if (jj > 0) {
7790cbbd2e1SMark F. Adams       const PetscInt lid = mm, cgid = my0crs + clid;
7800cbbd2e1SMark F. Adams       PetscInt       cids[100]; /* max bs */
7810cbbd2e1SMark F. Adams       PetscBLASInt   asz  =jj,M=asz*bs,N=nSAvec,INFO;
7822e68589bSMark F. Adams       PetscBLASInt   Mdata=M+((N-M>0) ? N-M : 0),LDA=Mdata,LWORK=N*bs;
7832e68589bSMark F. Adams       PetscScalar    *qqc,*qqr,*TAU,*WORK;
7842e68589bSMark F. Adams       PetscInt       *fids;
78565d7b583SSatish Balay       PetscReal      *data;
7860cbbd2e1SMark F. Adams       /* count agg */
7870cbbd2e1SMark F. Adams       if (asz<minsz) minsz = asz;
7880cbbd2e1SMark F. Adams 
7890cbbd2e1SMark F. Adams       /* get block */
7902e68589bSMark F. Adams       ierr = PetscMalloc((Mdata*N)*sizeof(PetscScalar), &qqc);CHKERRQ(ierr);
7912e68589bSMark F. Adams       ierr = PetscMalloc((M*N)*sizeof(PetscScalar), &qqr);CHKERRQ(ierr);
7922e68589bSMark F. Adams       ierr = PetscMalloc(N*sizeof(PetscScalar), &TAU);CHKERRQ(ierr);
7932e68589bSMark F. Adams       ierr = PetscMalloc(LWORK*sizeof(PetscScalar), &WORK);CHKERRQ(ierr);
7942e68589bSMark F. Adams       ierr = PetscMalloc(M*sizeof(PetscInt), &fids);CHKERRQ(ierr);
7952e68589bSMark F. Adams 
7962e68589bSMark F. Adams       aggID = 0;
797e78576d6SMark F. Adams       ierr  = PetscCDGetHeadPos(agg_llists,lid,&pos);CHKERRQ(ierr);
798e78576d6SMark F. Adams       while (pos) {
799e78576d6SMark F. Adams         PetscInt gid1;
800ffc955d6SMark F. Adams         ierr = PetscLLNGetID(pos, &gid1);CHKERRQ(ierr);
801e78576d6SMark F. Adams         ierr = PetscCDGetNextPos(agg_llists,lid,&pos);CHKERRQ(ierr);
802e78576d6SMark F. Adams 
8030cbbd2e1SMark F. Adams         if (gid1 >= my0 && gid1 < Iend) flid = gid1 - my0;
8040cbbd2e1SMark F. Adams         else {
8050cbbd2e1SMark F. Adams           ierr = GAMGTableFind(&fgid_flid, gid1, &flid);CHKERRQ(ierr);
80671959b99SBarry Smith           if (flid < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cannot find gid1 in table");
8070cbbd2e1SMark F. Adams         }
8082e68589bSMark F. Adams         /* copy in B_i matrix - column oriented */
80965d7b583SSatish Balay         data = &data_in[flid*bs];
8102e68589bSMark F. Adams         for (kk = ii = 0; ii < bs; ii++) {
8112e68589bSMark F. Adams           for (jj = 0; jj < N; jj++) {
8120cbbd2e1SMark F. Adams             PetscReal d = data[jj*data_stride + ii];
8130cbbd2e1SMark F. Adams             qqc[jj*Mdata + aggID*bs + ii] = d;
8142e68589bSMark F. Adams           }
8152e68589bSMark F. Adams         }
816519f805aSKarl Rupp #if defined(OUT_AGGS)
817b2a4f308SMark F. Adams         if (llev==1) {
8189057884aSMark F. Adams           char     str[] = "plot(%e,%e,'r*'), hold on,\n", col[] = "rgbkmc", sim[] = "*os+h>d<vx^";
8190cbbd2e1SMark F. Adams           PetscInt MM,pi,pj;
820c5df96a5SBarry Smith           str[12] = col[(clid+17*rank)%6]; str[13] = sim[(clid+17*rank)%11];
821f7620de1SMatthew G Knepley           MM      = (PetscInt)(PetscSqrtReal((PetscReal)pM));
8220cbbd2e1SMark F. Adams           pj      = gid1/MM; pi = gid1%MM;
823b2a4f308SMark F. Adams           fprintf(file,str,(double)pi,(double)pj);
824b2a4f308SMark F. Adams           /* fprintf(file,str,data[2*data_stride+1],-data[2*data_stride]); */
8259057884aSMark F. Adams         }
8269057884aSMark F. Adams #endif
8272e68589bSMark F. Adams         /* set fine IDs */
8282e68589bSMark F. Adams         for (kk=0; kk<bs; kk++) fids[aggID*bs + kk] = flid_fgid[flid]*bs + kk;
8292e68589bSMark F. Adams 
8302e68589bSMark F. Adams         aggID++;
8310cbbd2e1SMark F. Adams       }
8322e68589bSMark F. Adams 
8332e68589bSMark F. Adams       /* pad with zeros */
8342e68589bSMark F. Adams       for (ii = asz*bs; ii < Mdata; ii++) {
8352e68589bSMark F. Adams         for (jj = 0; jj < N; jj++, kk++) {
8362e68589bSMark F. Adams           qqc[jj*Mdata + ii] = .0;
8372e68589bSMark F. Adams         }
8382e68589bSMark F. Adams       }
8392e68589bSMark F. Adams 
8402e68589bSMark F. Adams       ndone += aggID;
8412e68589bSMark F. Adams       /* QR */
84284df3f90SSatish Balay       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
8438b83055fSJed Brown       PetscStackCallBLAS("LAPACKgeqrf",LAPACKgeqrf_(&Mdata, &N, qqc, &LDA, TAU, WORK, &LWORK, &INFO));
84484df3f90SSatish Balay       ierr = PetscFPTrapPop();CHKERRQ(ierr);
845d23427c4SJed Brown       if (INFO != 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"xGEQRF error");
8462e68589bSMark F. Adams       /* get R - column oriented - output B_{i+1} */
8472e68589bSMark F. Adams       {
8482e68589bSMark F. Adams         PetscReal *data = &out_data[clid*nSAvec];
8492e68589bSMark F. Adams         for (jj = 0; jj < nSAvec; jj++) {
8502e68589bSMark F. Adams           for (ii = 0; ii < nSAvec; ii++) {
85133812677SSatish Balay             if (data[jj*out_data_stride + ii] != PETSC_MAX_REAL) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"data[jj*out_data_stride + ii] != %e",PETSC_MAX_REAL);
8520cbbd2e1SMark F. Adams            if (ii <= jj) data[jj*out_data_stride + ii] = PetscRealPart(qqc[jj*Mdata + ii]);
8530cbbd2e1SMark F. Adams            else data[jj*out_data_stride + ii] = 0.;
8542e68589bSMark F. Adams           }
8552e68589bSMark F. Adams         }
8562e68589bSMark F. Adams       }
8572e68589bSMark F. Adams 
8582e68589bSMark F. Adams       /* get Q - row oriented */
8598b83055fSJed Brown       PetscStackCallBLAS("LAPACKungqr",LAPACKungqr_(&Mdata, &N, &N, qqc, &LDA, TAU, WORK, &LWORK, &INFO));
860c666adbfSMark F. Adams       if (INFO != 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"xORGQR error arg %d",-INFO);
8612e68589bSMark F. Adams 
8622e68589bSMark F. Adams       for (ii = 0; ii < M; ii++) {
8632e68589bSMark F. Adams         for (jj = 0; jj < N; jj++) {
8642e68589bSMark F. Adams           qqr[N*ii + jj] = qqc[jj*Mdata + ii];
8652e68589bSMark F. Adams         }
8662e68589bSMark F. Adams       }
8672e68589bSMark F. Adams 
8682e68589bSMark F. Adams       /* add diagonal block of P0 */
869c8b0795cSMark F. Adams       for (kk=0; kk<N; kk++) {
870c8b0795cSMark F. Adams         cids[kk] = N*cgid + kk; /* global col IDs in P0 */
871c8b0795cSMark F. Adams       }
8722e68589bSMark F. Adams       ierr = MatSetValues(a_Prol,M,fids,N,cids,qqr,INSERT_VALUES);CHKERRQ(ierr);
8732e68589bSMark F. Adams 
8742e68589bSMark F. Adams       ierr = PetscFree(qqc);CHKERRQ(ierr);
8752e68589bSMark F. Adams       ierr = PetscFree(qqr);CHKERRQ(ierr);
8762e68589bSMark F. Adams       ierr = PetscFree(TAU);CHKERRQ(ierr);
8772e68589bSMark F. Adams       ierr = PetscFree(WORK);CHKERRQ(ierr);
8782e68589bSMark F. Adams       ierr = PetscFree(fids);CHKERRQ(ierr);
879b43b03e9SMark F. Adams       clid++;
8800cbbd2e1SMark F. Adams     } /* coarse agg */
8810cbbd2e1SMark F. Adams   } /* for all fine nodes */
8820cbbd2e1SMark F. Adams   ierr = MatAssemblyBegin(a_Prol,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8830cbbd2e1SMark F. Adams   ierr = MatAssemblyEnd(a_Prol,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8842e68589bSMark F. Adams 
8853b4367a7SBarry Smith /* ierr = MPI_Allreduce(&ndone, &ii, 1, MPIU_INT, MPIU_SUM, comm); */
8862e68589bSMark F. Adams /* MatGetSize(a_Prol, &kk, &jj); */
8873b4367a7SBarry Smith /* ierr = MPI_Allreduce(&minsz, &jj, 1, MPIU_INT, MPIU_MIN, comm); */
8883b4367a7SBarry Smith /* PetscPrintf(comm," **** [%d]%s %d total done, %d nodes (%d local done), min agg. size = %d\n",rank,__FUNCT__,ii,kk/bs,ndone,jj); */
8892e68589bSMark F. Adams 
890519f805aSKarl Rupp #if defined(OUT_AGGS)
891b2a4f308SMark F. Adams   if (llev==1) fclose(file);
8929057884aSMark F. Adams #endif
8930cbbd2e1SMark F. Adams   ierr = GAMGTableDestroy(&fgid_flid);CHKERRQ(ierr);
8942e68589bSMark F. Adams   PetscFunctionReturn(0);
8952e68589bSMark F. Adams }
8962e68589bSMark F. Adams 
8972e68589bSMark F. Adams /* -------------------------------------------------------------------------- */
8982e68589bSMark F. Adams /*
899c8b0795cSMark F. Adams    PCGAMGgraph_AGG
9002e68589bSMark F. Adams 
9012e68589bSMark F. Adams   Input Parameter:
9022e68589bSMark F. Adams    . pc - this
9032e68589bSMark F. Adams    . Amat - matrix on this fine level
9042e68589bSMark F. Adams   Output Parameter:
905c8b0795cSMark F. Adams    . a_Gmat -
9062e68589bSMark F. Adams */
9072e68589bSMark F. Adams #undef __FUNCT__
908c8b0795cSMark F. Adams #define __FUNCT__ "PCGAMGgraph_AGG"
9092fa5cd67SKarl Rupp PetscErrorCode PCGAMGgraph_AGG(PC pc,const Mat Amat,Mat *a_Gmat)
910c8b0795cSMark F. Adams {
911c8b0795cSMark F. Adams   PetscErrorCode            ierr;
912c8b0795cSMark F. Adams   PC_MG                     *mg          = (PC_MG*)pc->data;
913c8b0795cSMark F. Adams   PC_GAMG                   *pc_gamg     = (PC_GAMG*)mg->innerctx;
914c8b0795cSMark F. Adams   const PetscInt            verbose      = pc_gamg->verbose;
915c8b0795cSMark F. Adams   const PetscReal           vfilter      = pc_gamg->threshold;
916c8b0795cSMark F. Adams   PC_GAMG_AGG               *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx;
917c5df96a5SBarry Smith   PetscMPIInt               rank,size;
918e0940f08SMark F. Adams   Mat                       Gmat;
9193b4367a7SBarry Smith   MPI_Comm                  comm;
92067744fedSMark F. Adams   PetscBool /* set,flg , */ symm;
921c8b0795cSMark F. Adams 
922c8b0795cSMark F. Adams   PetscFunctionBegin;
9233b4367a7SBarry Smith   ierr = PetscObjectGetComm((PetscObject)Amat,&comm);CHKERRQ(ierr);
9240cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG
9250cbbd2e1SMark F. Adams   ierr = PetscLogEventBegin(PC_GAMGGgraph_AGG,0,0,0,0);CHKERRQ(ierr);
9260cbbd2e1SMark F. Adams #endif
9273b4367a7SBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
9283b4367a7SBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
929c8b0795cSMark F. Adams 
93067744fedSMark F. Adams   /* ierr = MatIsSymmetricKnown(Amat, &set, &flg);CHKERRQ(ierr); || !(set && flg) -- this causes lot of symm calls */
931c666adbfSMark F. Adams   symm = (PetscBool)(pc_gamg_agg->sym_graph); /* && !pc_gamg_agg->square_graph; */
9320cbbd2e1SMark F. Adams 
9332d7fac45SMark F. Adams   ierr = PCGAMGCreateGraph(Amat, &Gmat);CHKERRQ(ierr);
9342d7fac45SMark F. Adams   ierr = PCGAMGFilterGraph(&Gmat, vfilter, symm, verbose);CHKERRQ(ierr);
935c8b0795cSMark F. Adams 
936e0940f08SMark F. Adams   *a_Gmat = Gmat;
937c8b0795cSMark F. Adams 
9380cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG
9390cbbd2e1SMark F. Adams   ierr = PetscLogEventEnd(PC_GAMGGgraph_AGG,0,0,0,0);CHKERRQ(ierr);
9400cbbd2e1SMark F. Adams #endif
941c8b0795cSMark F. Adams   PetscFunctionReturn(0);
942c8b0795cSMark F. Adams }
943c8b0795cSMark F. Adams 
944c8b0795cSMark F. Adams /* -------------------------------------------------------------------------- */
945c8b0795cSMark F. Adams /*
946b43b03e9SMark F. Adams    PCGAMGCoarsen_AGG
947c8b0795cSMark F. Adams 
948c8b0795cSMark F. Adams   Input Parameter:
949e0940f08SMark F. Adams    . a_pc - this
950e0940f08SMark F. Adams   Input/Output Parameter:
9510cbbd2e1SMark F. Adams    . a_Gmat1 - graph on this fine level - coarsening can change this (squares it)
952c8b0795cSMark F. Adams   Output Parameter:
9530cbbd2e1SMark F. Adams    . agg_lists - list of aggregates
954c8b0795cSMark F. Adams */
955c8b0795cSMark F. Adams #undef __FUNCT__
956b43b03e9SMark F. Adams #define __FUNCT__ "PCGAMGCoarsen_AGG"
9572fa5cd67SKarl Rupp PetscErrorCode PCGAMGCoarsen_AGG(PC a_pc,Mat *a_Gmat1,PetscCoarsenData **agg_lists)
958c8b0795cSMark F. Adams {
959c8b0795cSMark F. Adams   PetscErrorCode ierr;
960e0940f08SMark F. Adams   PC_MG          *mg          = (PC_MG*)a_pc->data;
961c8b0795cSMark F. Adams   PC_GAMG        *pc_gamg     = (PC_GAMG*)mg->innerctx;
962c8b0795cSMark F. Adams   PC_GAMG_AGG    *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx;
9630cbbd2e1SMark F. Adams   Mat            mat,Gmat2, Gmat1 = *a_Gmat1;  /* squared graph */
9649f3f12c8SMark F. Adams   const PetscInt verbose = pc_gamg->verbose;
9650cbbd2e1SMark F. Adams   IS             perm;
966c8b0795cSMark F. Adams   PetscInt       Ii,nloc,bs,n,m;
967c8b0795cSMark F. Adams   PetscInt       *permute;
968c8b0795cSMark F. Adams   PetscBool      *bIndexSet;
969b43b03e9SMark F. Adams   MatCoarsen     crs;
9703b4367a7SBarry Smith   MPI_Comm       comm;
971c5df96a5SBarry Smith   PetscMPIInt    rank,size;
972c8b0795cSMark F. Adams 
973c8b0795cSMark F. Adams   PetscFunctionBegin;
9740cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG
9750cbbd2e1SMark F. Adams   ierr = PetscLogEventBegin(PC_GAMGCoarsen_AGG,0,0,0,0);CHKERRQ(ierr);
9760cbbd2e1SMark F. Adams #endif
9773b4367a7SBarry Smith   ierr = PetscObjectGetComm((PetscObject)Gmat1,&comm);CHKERRQ(ierr);
9783b4367a7SBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
9793b4367a7SBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
980e0940f08SMark F. Adams   ierr = MatGetLocalSize(Gmat1, &n, &m);CHKERRQ(ierr);
98171959b99SBarry Smith   ierr = MatGetBlockSize(Gmat1, &bs);CHKERRQ(ierr);
98271959b99SBarry Smith   if (bs != 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"bs %D must be 1",bs);
983c8b0795cSMark F. Adams   nloc = n/bs;
984c8b0795cSMark F. Adams 
985e0940f08SMark F. Adams   if (pc_gamg_agg->square_graph) {
9863b4367a7SBarry Smith     if (verbose > 1) PetscPrintf(comm,"[%d]%s square graph\n",rank,__FUNCT__);
987878e152fSMark F. Adams     /* ierr = MatMatTransposeMult(Gmat1, Gmat1, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Gmat2); */
988806fa848SBarry Smith     ierr = MatTransposeMatMult(Gmat1, Gmat1, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Gmat2);CHKERRQ(ierr);
9899f3f12c8SMark F. Adams     if (verbose > 2) {
9903b4367a7SBarry Smith       ierr = PetscPrintf(comm,"[%d]%s square graph done\n",rank,__FUNCT__);CHKERRQ(ierr);
991f10ff945SMark F. Adams       /* check for symetry */
992f10ff945SMark F. Adams       if (verbose > 4) {
993f10ff945SMark F. Adams 
994f10ff945SMark F. Adams       }
9959f3f12c8SMark F. Adams     }
996806fa848SBarry Smith   } else Gmat2 = Gmat1;
997c8b0795cSMark F. Adams 
998c8b0795cSMark F. Adams   /* get MIS aggs */
999c8b0795cSMark F. Adams   /* randomize */
1000c8b0795cSMark F. Adams   ierr = PetscMalloc(nloc*sizeof(PetscInt), &permute);CHKERRQ(ierr);
1001c8b0795cSMark F. Adams   ierr = PetscMalloc(nloc*sizeof(PetscBool), &bIndexSet);CHKERRQ(ierr);
1002c8b0795cSMark F. Adams   for (Ii = 0; Ii < nloc; Ii++) {
1003c8b0795cSMark F. Adams     bIndexSet[Ii] = PETSC_FALSE;
1004c8b0795cSMark F. Adams     permute[Ii]   = Ii;
1005c8b0795cSMark F. Adams   }
1006c8b0795cSMark F. Adams   srand(1); /* make deterministic */
1007c8b0795cSMark F. Adams   for (Ii = 0; Ii < nloc; Ii++) {
1008c8b0795cSMark F. Adams     PetscInt iSwapIndex = rand()%nloc;
1009c8b0795cSMark F. Adams     if (!bIndexSet[iSwapIndex] && iSwapIndex != Ii) {
1010c8b0795cSMark F. Adams       PetscInt iTemp = permute[iSwapIndex];
1011c8b0795cSMark F. Adams       permute[iSwapIndex]   = permute[Ii];
1012c8b0795cSMark F. Adams       permute[Ii]           = iTemp;
1013c8b0795cSMark F. Adams       bIndexSet[iSwapIndex] = PETSC_TRUE;
1014c8b0795cSMark F. Adams     }
1015c8b0795cSMark F. Adams   }
1016c8b0795cSMark F. Adams   ierr = PetscFree(bIndexSet);CHKERRQ(ierr);
1017c8b0795cSMark F. Adams 
10183b4367a7SBarry Smith   if (verbose > 1) PetscPrintf(comm,"[%d]%s coarsen graph\n",rank,__FUNCT__);
10199f3f12c8SMark F. Adams 
1020806fa848SBarry Smith   ierr = ISCreateGeneral(PETSC_COMM_SELF, nloc, permute, PETSC_USE_POINTER, &perm);CHKERRQ(ierr);
10210cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG
10220cbbd2e1SMark F. Adams   ierr = PetscLogEventBegin(petsc_gamg_setup_events[SET4],0,0,0,0);CHKERRQ(ierr);
1023b43b03e9SMark F. Adams #endif
10243b4367a7SBarry Smith   ierr = MatCoarsenCreate(comm, &crs);CHKERRQ(ierr);
10259057884aSMark F. Adams   /* ierr = MatCoarsenSetType(crs, MATCOARSENMIS);CHKERRQ(ierr); */
10269057884aSMark F. Adams   ierr = MatCoarsenSetFromOptions(crs);CHKERRQ(ierr);
1027b43b03e9SMark F. Adams   ierr = MatCoarsenSetGreedyOrdering(crs, perm);CHKERRQ(ierr);
1028b43b03e9SMark F. Adams   ierr = MatCoarsenSetAdjacency(crs, Gmat2);CHKERRQ(ierr);
1029b43b03e9SMark F. Adams   ierr = MatCoarsenSetVerbose(crs, pc_gamg->verbose);CHKERRQ(ierr);
1030b43b03e9SMark F. Adams   ierr = MatCoarsenSetStrictAggs(crs, PETSC_TRUE);CHKERRQ(ierr);
1031b43b03e9SMark F. Adams   ierr = MatCoarsenApply(crs);CHKERRQ(ierr);
10320cbbd2e1SMark F. Adams   ierr = MatCoarsenGetData(crs, agg_lists);CHKERRQ(ierr); /* output */
1033b43b03e9SMark F. Adams   ierr = MatCoarsenDestroy(&crs);CHKERRQ(ierr);
1034b43b03e9SMark F. Adams 
1035c8b0795cSMark F. Adams   ierr = ISDestroy(&perm);CHKERRQ(ierr);
1036c8b0795cSMark F. Adams   ierr = PetscFree(permute);CHKERRQ(ierr);
10370cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG
10380cbbd2e1SMark F. Adams   ierr = PetscLogEventEnd(petsc_gamg_setup_events[SET4],0,0,0,0);CHKERRQ(ierr);
1039b43b03e9SMark F. Adams #endif
10403b4367a7SBarry Smith   if (verbose > 2) PetscPrintf(comm,"[%d]%s coarsen graph done\n",rank,__FUNCT__);
10419f3f12c8SMark F. Adams 
1042c8b0795cSMark F. Adams   /* smooth aggs */
1043e0940f08SMark F. Adams   if (Gmat2 != Gmat1) {
10440cbbd2e1SMark F. Adams     const PetscCoarsenData *llist = *agg_lists;
10450cbbd2e1SMark F. Adams     ierr     = smoothAggs(Gmat2, Gmat1, *agg_lists);CHKERRQ(ierr);
1046c8b0795cSMark F. Adams     ierr     = MatDestroy(&Gmat1);CHKERRQ(ierr);
1047e0940f08SMark F. Adams     *a_Gmat1 = Gmat2; /* output */
104841b27cdeSMark F. Adams     ierr     = PetscCDGetMat(llist, &mat);CHKERRQ(ierr);
10493b4367a7SBarry Smith     if (mat) SETERRQ(comm,PETSC_ERR_ARG_WRONG, "Auxilary matrix with squared graph????");
1050806fa848SBarry Smith   } else {
10510cbbd2e1SMark F. Adams     const PetscCoarsenData *llist = *agg_lists;
1052f10ff945SMark F. Adams     /* see if we have a matrix that takes precedence (returned from MatCoarsenAppply) */
105341b27cdeSMark F. Adams     ierr = PetscCDGetMat(llist, &mat);CHKERRQ(ierr);
10540cbbd2e1SMark F. Adams     if (mat) {
10550cbbd2e1SMark F. Adams       ierr     = MatDestroy(&Gmat1);CHKERRQ(ierr);
10560cbbd2e1SMark F. Adams       *a_Gmat1 = mat; /* output */
10570cbbd2e1SMark F. Adams     }
10580cbbd2e1SMark F. Adams   }
10590cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG
10600cbbd2e1SMark F. Adams   ierr = PetscLogEventEnd(PC_GAMGCoarsen_AGG,0,0,0,0);CHKERRQ(ierr);
10610cbbd2e1SMark F. Adams #endif
10623b4367a7SBarry Smith   if (verbose > 2) PetscPrintf(comm,"[%d]%s PCGAMGCoarsen_AGG done\n",rank,__FUNCT__);
1063c8b0795cSMark F. Adams   PetscFunctionReturn(0);
1064c8b0795cSMark F. Adams }
1065c8b0795cSMark F. Adams 
1066c8b0795cSMark F. Adams /* -------------------------------------------------------------------------- */
1067c8b0795cSMark F. Adams /*
10680cbbd2e1SMark F. Adams  PCGAMGProlongator_AGG
1069c8b0795cSMark F. Adams 
1070c8b0795cSMark F. Adams  Input Parameter:
1071c8b0795cSMark F. Adams  . pc - this
1072c8b0795cSMark F. Adams  . Amat - matrix on this fine level
1073c8b0795cSMark F. Adams  . Graph - used to get ghost data for nodes in
10740cbbd2e1SMark F. Adams  . agg_lists - list of aggregates
1075c8b0795cSMark F. Adams  Output Parameter:
1076c8b0795cSMark F. Adams  . a_P_out - prolongation operator to the next level
1077c8b0795cSMark F. Adams  */
1078c8b0795cSMark F. Adams #undef __FUNCT__
10790cbbd2e1SMark F. Adams #define __FUNCT__ "PCGAMGProlongator_AGG"
10802fa5cd67SKarl Rupp PetscErrorCode PCGAMGProlongator_AGG(PC pc,const Mat Amat,const Mat Gmat,PetscCoarsenData *agg_lists,Mat *a_P_out)
10812e68589bSMark F. Adams {
10822e68589bSMark F. Adams   PC_MG          *mg       = (PC_MG*)pc->data;
10832e68589bSMark F. Adams   PC_GAMG        *pc_gamg  = (PC_GAMG*)mg->innerctx;
10842e68589bSMark F. Adams   const PetscInt verbose   = pc_gamg->verbose;
1085c8b0795cSMark F. Adams   const PetscInt data_cols = pc_gamg->data_cell_cols;
10862e68589bSMark F. Adams   PetscErrorCode ierr;
1087c8b0795cSMark F. Adams   PetscInt       Istart,Iend,nloc,ii,jj,kk,my0,nLocalSelected,bs;
1088c8b0795cSMark F. Adams   Mat            Prol;
1089c5df96a5SBarry Smith   PetscMPIInt    rank, size;
10903b4367a7SBarry Smith   MPI_Comm       comm;
10910cbbd2e1SMark F. Adams   const PetscInt col_bs = data_cols;
1092c8b0795cSMark F. Adams   PetscReal      *data_w_ghost;
1093c8b0795cSMark F. Adams   PetscInt       myCrs0, nbnodes=0, *flid_fgid;
10942e68589bSMark F. Adams 
10952e68589bSMark F. Adams   PetscFunctionBegin;
10963b4367a7SBarry Smith   ierr = PetscObjectGetComm((PetscObject)Amat,&comm);CHKERRQ(ierr);
10970cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG
10980cbbd2e1SMark F. Adams   ierr = PetscLogEventBegin(PC_GAMGProlongator_AGG,0,0,0,0);CHKERRQ(ierr);
10990cbbd2e1SMark F. Adams #endif
11003b4367a7SBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
11013b4367a7SBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
11022e68589bSMark F. Adams   ierr = MatGetOwnershipRange(Amat, &Istart, &Iend);CHKERRQ(ierr);
1103c8b0795cSMark F. Adams   ierr = MatGetBlockSize(Amat, &bs);CHKERRQ(ierr);
110471959b99SBarry Smith   nloc = (Iend-Istart)/bs; my0 = Istart/bs;
110571959b99SBarry Smith   if ((Iend-Istart) % bs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"(Iend %D - Istart %D) not divisible by bs %D",Iend,Istart,bs);
11062e68589bSMark F. Adams 
11072e68589bSMark F. Adams   /* get 'nLocalSelected' */
11080cbbd2e1SMark F. Adams   for (ii=0, nLocalSelected = 0; ii < nloc; ii++) {
1109e78576d6SMark F. Adams     PetscBool ise;
11100cbbd2e1SMark F. Adams     /* filter out singletons 0 or 1? */
1111e78576d6SMark F. Adams     ierr = PetscCDEmptyAt(agg_lists, ii, &ise);CHKERRQ(ierr);
1112e78576d6SMark F. Adams     if (!ise) nLocalSelected++;
11132e68589bSMark F. Adams   }
11142e68589bSMark F. Adams 
11152e68589bSMark F. Adams   /* create prolongator, create P matrix */
11163b4367a7SBarry Smith   ierr = MatCreate(comm, &Prol);CHKERRQ(ierr);
1117806fa848SBarry Smith   ierr = MatSetSizes(Prol,nloc*bs,nLocalSelected*col_bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
1118a2f3521dSMark F. Adams   ierr = MatSetBlockSizes(Prol, bs, col_bs);CHKERRQ(ierr);
1119a2f3521dSMark F. Adams   ierr = MatSetType(Prol, MATAIJ);CHKERRQ(ierr);
11200298fd71SBarry Smith   ierr = MatSeqAIJSetPreallocation(Prol, data_cols, NULL);CHKERRQ(ierr);
11210298fd71SBarry Smith   ierr = MatMPIAIJSetPreallocation(Prol,data_cols, NULL,data_cols, NULL);CHKERRQ(ierr);
1122a2f3521dSMark F. Adams   /* nloc*bs, nLocalSelected*col_bs, */
1123a2f3521dSMark F. Adams   /* PETSC_DETERMINE, PETSC_DETERMINE, */
11240298fd71SBarry Smith   /* data_cols, NULL, data_cols, NULL, */
1125a2f3521dSMark F. Adams   /* &Prol); */
11262e68589bSMark F. Adams 
11272e68589bSMark F. Adams   /* can get all points "removed" */
1128c8b0795cSMark F. Adams   ierr =  MatGetSize(Prol, &kk, &ii);CHKERRQ(ierr);
1129c8b0795cSMark F. Adams   if (ii==0) {
11303b4367a7SBarry Smith     if (verbose > 0) PetscPrintf(comm,"[%d]%s no selected points on coarse grid\n",rank,__FUNCT__);
11312e68589bSMark F. Adams     ierr = MatDestroy(&Prol);CHKERRQ(ierr);
11320298fd71SBarry Smith     *a_P_out = NULL;  /* out */
11332e68589bSMark F. Adams     PetscFunctionReturn(0);
11342e68589bSMark F. Adams   }
11353b4367a7SBarry Smith   if (verbose > 0) PetscPrintf(comm,"\t\t[%d]%s New grid %d nodes\n",rank,__FUNCT__,ii/col_bs);
1136c8b0795cSMark F. Adams   ierr = MatGetOwnershipRangeColumn(Prol, &myCrs0, &kk);CHKERRQ(ierr);
11370cbbd2e1SMark F. Adams 
113871959b99SBarry Smith   if ((kk-myCrs0) % col_bs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"(kk %D -myCrs0 %D) not divisible by col_bs %D",kk,myCrs0,col_bs);
1139c8b0795cSMark F. Adams   myCrs0 = myCrs0/col_bs;
114071959b99SBarry Smith   if ((kk/col_bs-myCrs0) != nLocalSelected) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_PLIB,"(kk %D/col_bs %D - myCrs0 %D) != nLocalSelected %D)",kk,col_bs,myCrs0,nLocalSelected);
11412e68589bSMark F. Adams 
11422e68589bSMark F. Adams   /* create global vector of data in 'data_w_ghost' */
11430cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG
11440cbbd2e1SMark F. Adams   ierr = PetscLogEventBegin(petsc_gamg_setup_events[SET7],0,0,0,0);CHKERRQ(ierr);
11452e68589bSMark F. Adams #endif
1146c5df96a5SBarry Smith   if (size > 1) { /*  */
11472e68589bSMark F. Adams     PetscReal *tmp_gdata,*tmp_ldata,*tp2;
11482e68589bSMark F. Adams     ierr = PetscMalloc(nloc*sizeof(PetscReal), &tmp_ldata);CHKERRQ(ierr);
11492e68589bSMark F. Adams     for (jj = 0; jj < data_cols; jj++) {
1150c8b0795cSMark F. Adams       for (kk = 0; kk < bs; kk++) {
1151a2f3521dSMark F. Adams         PetscInt        ii,stride;
1152c8b0795cSMark F. Adams         const PetscReal *tp = pc_gamg->data + jj*bs*nloc + kk;
11532fa5cd67SKarl Rupp         for (ii = 0; ii < nloc; ii++, tp += bs) tmp_ldata[ii] = *tp;
11542fa5cd67SKarl Rupp 
1155806fa848SBarry Smith         ierr = PCGAMGGetDataWithGhosts(Gmat, 1, tmp_ldata, &stride, &tmp_gdata);CHKERRQ(ierr);
1156a2f3521dSMark F. Adams 
11572e68589bSMark F. Adams         if (jj==0 && kk==0) { /* now I know how many todal nodes - allocate */
1158a2f3521dSMark F. Adams           ierr    = PetscMalloc(stride*bs*data_cols*sizeof(PetscReal), &data_w_ghost);CHKERRQ(ierr);
1159a2f3521dSMark F. Adams           nbnodes = bs*stride;
11602e68589bSMark F. Adams         }
1161a2f3521dSMark F. Adams         tp2 = data_w_ghost + jj*bs*stride + kk;
11622fa5cd67SKarl Rupp         for (ii = 0; ii < stride; ii++, tp2 += bs) *tp2 = tmp_gdata[ii];
11632e68589bSMark F. Adams         ierr = PetscFree(tmp_gdata);CHKERRQ(ierr);
11642e68589bSMark F. Adams       }
11652e68589bSMark F. Adams     }
11662e68589bSMark F. Adams     ierr = PetscFree(tmp_ldata);CHKERRQ(ierr);
1167806fa848SBarry Smith   } else {
1168c8b0795cSMark F. Adams     nbnodes      = bs*nloc;
1169c8b0795cSMark F. Adams     data_w_ghost = (PetscReal*)pc_gamg->data;
11702e68589bSMark F. Adams   }
11712e68589bSMark F. Adams 
11722e68589bSMark F. Adams   /* get P0 */
1173c5df96a5SBarry Smith   if (size > 1) {
11742e68589bSMark F. Adams     PetscReal *fid_glid_loc,*fiddata;
1175a2f3521dSMark F. Adams     PetscInt  stride;
11762e68589bSMark F. Adams 
11772e68589bSMark F. Adams     ierr = PetscMalloc(nloc*sizeof(PetscReal), &fid_glid_loc);CHKERRQ(ierr);
11782e68589bSMark F. Adams     for (kk=0; kk<nloc; kk++) fid_glid_loc[kk] = (PetscReal)(my0+kk);
1179806fa848SBarry Smith     ierr = PCGAMGGetDataWithGhosts(Gmat, 1, fid_glid_loc, &stride, &fiddata);CHKERRQ(ierr);
1180a2f3521dSMark F. Adams     ierr = PetscMalloc(stride*sizeof(PetscInt), &flid_fgid);CHKERRQ(ierr);
1181a2f3521dSMark F. Adams     for (kk=0; kk<stride; kk++) flid_fgid[kk] = (PetscInt)fiddata[kk];
11822e68589bSMark F. Adams     ierr = PetscFree(fiddata);CHKERRQ(ierr);
1183a2f3521dSMark F. Adams 
118471959b99SBarry Smith     if (stride != nbnodes/bs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"stride %D != nbnodes %D/bs %D",stride,nbnodes,bs);
11852e68589bSMark F. Adams     ierr = PetscFree(fid_glid_loc);CHKERRQ(ierr);
1186806fa848SBarry Smith   } else {
11872e68589bSMark F. Adams     ierr = PetscMalloc(nloc*sizeof(PetscInt), &flid_fgid);CHKERRQ(ierr);
11882e68589bSMark F. Adams     for (kk=0; kk<nloc; kk++) flid_fgid[kk] = my0 + kk;
11892e68589bSMark F. Adams   }
11900cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG
11910cbbd2e1SMark F. Adams   ierr = PetscLogEventEnd(petsc_gamg_setup_events[SET7],0,0,0,0);CHKERRQ(ierr);
11920cbbd2e1SMark F. Adams   ierr = PetscLogEventBegin(petsc_gamg_setup_events[SET8],0,0,0,0);CHKERRQ(ierr);
11932e68589bSMark F. Adams #endif
1194c8b0795cSMark F. Adams   {
11950298fd71SBarry Smith     PetscReal *data_out = NULL;
1196806fa848SBarry Smith     ierr = formProl0(agg_lists, bs, data_cols, myCrs0, nbnodes,data_w_ghost, flid_fgid, &data_out, Prol);CHKERRQ(ierr);
1197c8b0795cSMark F. Adams     ierr = PetscFree(pc_gamg->data);CHKERRQ(ierr);
11982fa5cd67SKarl Rupp 
1199c8b0795cSMark F. Adams     pc_gamg->data           = data_out;
1200c8b0795cSMark F. Adams     pc_gamg->data_cell_rows = data_cols;
1201c8b0795cSMark F. Adams     pc_gamg->data_sz        = data_cols*data_cols*nLocalSelected;
1202c8b0795cSMark F. Adams   }
12030cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG
12040cbbd2e1SMark F. Adams   ierr = PetscLogEventEnd(petsc_gamg_setup_events[SET8],0,0,0,0);CHKERRQ(ierr);
1205c8b0795cSMark F. Adams #endif
1206c5df96a5SBarry Smith   if (size > 1) ierr = PetscFree(data_w_ghost);CHKERRQ(ierr);
12072e68589bSMark F. Adams   ierr = PetscFree(flid_fgid);CHKERRQ(ierr);
12082e68589bSMark F. Adams 
1209c8b0795cSMark F. Adams   *a_P_out = Prol;  /* out */
12100cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG
12110cbbd2e1SMark F. Adams   ierr = PetscLogEventEnd(PC_GAMGProlongator_AGG,0,0,0,0);CHKERRQ(ierr);
12120cbbd2e1SMark F. Adams #endif
1213c8b0795cSMark F. Adams   PetscFunctionReturn(0);
1214c8b0795cSMark F. Adams }
1215c8b0795cSMark F. Adams 
1216c8b0795cSMark F. Adams /* -------------------------------------------------------------------------- */
1217c8b0795cSMark F. Adams /*
12180cbbd2e1SMark F. Adams    PCGAMGOptprol_AGG
1219c8b0795cSMark F. Adams 
1220c8b0795cSMark F. Adams   Input Parameter:
1221c8b0795cSMark F. Adams    . pc - this
1222c8b0795cSMark F. Adams    . Amat - matrix on this fine level
1223c8b0795cSMark F. Adams  In/Output Parameter:
1224c8b0795cSMark F. Adams    . a_P_out - prolongation operator to the next level
1225c8b0795cSMark F. Adams */
1226c8b0795cSMark F. Adams #undef __FUNCT__
12270cbbd2e1SMark F. Adams #define __FUNCT__ "PCGAMGOptprol_AGG"
12282fa5cd67SKarl Rupp PetscErrorCode PCGAMGOptprol_AGG(PC pc,const Mat Amat,Mat *a_P)
1229c8b0795cSMark F. Adams {
1230c8b0795cSMark F. Adams   PetscErrorCode ierr;
1231c8b0795cSMark F. Adams   PC_MG          *mg          = (PC_MG*)pc->data;
1232c8b0795cSMark F. Adams   PC_GAMG        *pc_gamg     = (PC_GAMG*)mg->innerctx;
1233c8b0795cSMark F. Adams   const PetscInt verbose      = pc_gamg->verbose;
1234c8b0795cSMark F. Adams   PC_GAMG_AGG    *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx;
1235c8b0795cSMark F. Adams   PetscInt       jj;
1236c5df96a5SBarry Smith   PetscMPIInt    rank,size;
1237c8b0795cSMark F. Adams   Mat            Prol  = *a_P;
12383b4367a7SBarry Smith   MPI_Comm       comm;
1239c8b0795cSMark F. Adams 
1240c8b0795cSMark F. Adams   PetscFunctionBegin;
12413b4367a7SBarry Smith   ierr = PetscObjectGetComm((PetscObject)Amat,&comm);CHKERRQ(ierr);
12420cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG
12430cbbd2e1SMark F. Adams   ierr = PetscLogEventBegin(PC_GAMGOptprol_AGG,0,0,0,0);CHKERRQ(ierr);
12440cbbd2e1SMark F. Adams #endif
12453b4367a7SBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
12463b4367a7SBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
1247c8b0795cSMark F. Adams 
12482e68589bSMark F. Adams   /* smooth P0 */
1249c8b0795cSMark F. Adams   for (jj = 0; jj < pc_gamg_agg->nsmooths; jj++) {
12502e68589bSMark F. Adams     Mat       tMat;
12512e68589bSMark F. Adams     Vec       diag;
12522e68589bSMark F. Adams     PetscReal alpha, emax, emin;
12530cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG
12540cbbd2e1SMark F. Adams     ierr = PetscLogEventBegin(petsc_gamg_setup_events[SET9],0,0,0,0);CHKERRQ(ierr);
12552e68589bSMark F. Adams #endif
12562e68589bSMark F. Adams     if (jj == 0) {
12572e68589bSMark F. Adams       KSP eksp;
12582e68589bSMark F. Adams       Vec bb, xx;
1259da509fc8SJed Brown       PC  epc;
12602e68589bSMark F. Adams       ierr = MatGetVecs(Amat, &bb, 0);CHKERRQ(ierr);
12612e68589bSMark F. Adams       ierr = MatGetVecs(Amat, &xx, 0);CHKERRQ(ierr);
12622e68589bSMark F. Adams       {
12632e68589bSMark F. Adams         PetscRandom rctx;
12643b4367a7SBarry Smith         ierr = PetscRandomCreate(comm,&rctx);CHKERRQ(ierr);
12652e68589bSMark F. Adams         ierr = PetscRandomSetFromOptions(rctx);CHKERRQ(ierr);
12662e68589bSMark F. Adams         ierr = VecSetRandom(bb,rctx);CHKERRQ(ierr);
12672e68589bSMark F. Adams         ierr = PetscRandomDestroy(&rctx);CHKERRQ(ierr);
12682e68589bSMark F. Adams       }
1269e696ed0bSMark F. Adams 
1270e696ed0bSMark F. Adams       /* zeroing out BC rows -- needed for crazy matrices */
1271e696ed0bSMark F. Adams       {
1272e696ed0bSMark F. Adams         PetscInt    Istart,Iend,ncols,jj,Ii;
1273e696ed0bSMark F. Adams         PetscScalar zero = 0.0;
1274e696ed0bSMark F. Adams         ierr = MatGetOwnershipRange(Amat, &Istart, &Iend);CHKERRQ(ierr);
1275e696ed0bSMark F. Adams         for (Ii = Istart, jj = 0; Ii < Iend; Ii++, jj++) {
1276e696ed0bSMark F. Adams           ierr = MatGetRow(Amat,Ii,&ncols,0,0);CHKERRQ(ierr);
1277e696ed0bSMark F. Adams           if (ncols <= 1) {
1278e696ed0bSMark F. Adams             ierr = VecSetValues(bb, 1, &Ii, &zero, INSERT_VALUES);CHKERRQ(ierr);
1279e696ed0bSMark F. Adams           }
1280e696ed0bSMark F. Adams           ierr = MatRestoreRow(Amat,Ii,&ncols,0,0);CHKERRQ(ierr);
1281e696ed0bSMark F. Adams         }
1282e696ed0bSMark F. Adams         ierr = VecAssemblyBegin(bb);CHKERRQ(ierr);
1283e696ed0bSMark F. Adams         ierr = VecAssemblyEnd(bb);CHKERRQ(ierr);
1284e696ed0bSMark F. Adams       }
1285e696ed0bSMark F. Adams 
12863b4367a7SBarry Smith       ierr = KSPCreate(comm,&eksp);CHKERRQ(ierr);
1287806fa848SBarry Smith       ierr = KSPSetTolerances(eksp,PETSC_DEFAULT,PETSC_DEFAULT,PETSC_DEFAULT,10);CHKERRQ(ierr);
12882e68589bSMark F. Adams       ierr = KSPSetNormType(eksp, KSP_NORM_NONE);CHKERRQ(ierr);
1289da509fc8SJed Brown       ierr = KSPSetOptionsPrefix(eksp,((PetscObject)pc)->prefix);CHKERRQ(ierr);
1290c2436cacSMark F. Adams       ierr = KSPAppendOptionsPrefix(eksp, "gamg_est_");CHKERRQ(ierr);
1291c2436cacSMark F. Adams       ierr = KSPSetFromOptions(eksp);CHKERRQ(ierr);
1292c2436cacSMark F. Adams 
1293c2436cacSMark F. Adams       ierr = KSPSetInitialGuessNonzero(eksp, PETSC_FALSE);CHKERRQ(ierr);
1294806fa848SBarry Smith       ierr = KSPSetOperators(eksp, Amat, Amat, SAME_NONZERO_PATTERN);CHKERRQ(ierr);
12952e68589bSMark F. Adams       ierr = KSPSetComputeSingularValues(eksp,PETSC_TRUE);CHKERRQ(ierr);
12962e68589bSMark F. Adams 
1297da509fc8SJed Brown       ierr = KSPGetPC(eksp, &epc);CHKERRQ(ierr);
1298da509fc8SJed Brown       ierr = PCSetType(epc, PCJACOBI);CHKERRQ(ierr);  /* smoother in smoothed agg. */
1299c2436cacSMark F. Adams 
13002e68589bSMark F. Adams       /* solve - keep stuff out of logging */
13012e68589bSMark F. Adams       ierr = PetscLogEventDeactivate(KSP_Solve);CHKERRQ(ierr);
13022e68589bSMark F. Adams       ierr = PetscLogEventDeactivate(PC_Apply);CHKERRQ(ierr);
13032e68589bSMark F. Adams       ierr = KSPSolve(eksp, bb, xx);CHKERRQ(ierr);
13042e68589bSMark F. Adams       ierr = PetscLogEventActivate(KSP_Solve);CHKERRQ(ierr);
13052e68589bSMark F. Adams       ierr = PetscLogEventActivate(PC_Apply);CHKERRQ(ierr);
13062e68589bSMark F. Adams 
13072e68589bSMark F. Adams       ierr = KSPComputeExtremeSingularValues(eksp, &emax, &emin);CHKERRQ(ierr);
13089f3f12c8SMark F. Adams       if (verbose > 0) {
13093b4367a7SBarry Smith         PetscPrintf(comm,"\t\t\t%s smooth P0: max eigen=%e min=%e PC=%s\n",
13102e68589bSMark F. Adams                     __FUNCT__,emax,emin,PCJACOBI);
13112e68589bSMark F. Adams       }
13122e68589bSMark F. Adams       ierr = VecDestroy(&xx);CHKERRQ(ierr);
13132e68589bSMark F. Adams       ierr = VecDestroy(&bb);CHKERRQ(ierr);
13142e68589bSMark F. Adams       ierr = KSPDestroy(&eksp);CHKERRQ(ierr);
13152e68589bSMark F. Adams 
13162e68589bSMark F. Adams       if (pc_gamg->emax_id == -1) {
13173bf036e2SBarry Smith         ierr = PetscObjectComposedDataRegister(&pc_gamg->emax_id);CHKERRQ(ierr);
131871959b99SBarry Smith         if (pc_gamg->emax_id == -1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"pc_gamg->emax_id == -1");
13192e68589bSMark F. Adams       }
13202e68589bSMark F. Adams       ierr = PetscObjectComposedDataSetScalar((PetscObject)Amat, pc_gamg->emax_id, emax);CHKERRQ(ierr);
13212e68589bSMark F. Adams     }
13222e68589bSMark F. Adams 
13232e68589bSMark F. Adams     /* smooth P1 := (I - omega/lam D^{-1}A)P0 */
13242e68589bSMark F. Adams     ierr  = MatMatMult(Amat, Prol, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &tMat);CHKERRQ(ierr);
13252e68589bSMark F. Adams     ierr  = MatGetVecs(Amat, &diag, 0);CHKERRQ(ierr);
13262e68589bSMark F. Adams     ierr  = MatGetDiagonal(Amat, diag);CHKERRQ(ierr); /* effectively PCJACOBI */
13272e68589bSMark F. Adams     ierr  = VecReciprocal(diag);CHKERRQ(ierr);
13282e68589bSMark F. Adams     ierr  = MatDiagonalScale(tMat, diag, 0);CHKERRQ(ierr);
13292e68589bSMark F. Adams     ierr  = VecDestroy(&diag);CHKERRQ(ierr);
1330b4ec6429SMark F. Adams     alpha = -1.4/emax;
13312e68589bSMark F. Adams     ierr  = MatAYPX(tMat, alpha, Prol, SUBSET_NONZERO_PATTERN);CHKERRQ(ierr);
13322e68589bSMark F. Adams     ierr  = MatDestroy(&Prol);CHKERRQ(ierr);
13332e68589bSMark F. Adams     Prol  = tMat;
13340cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG
13350cbbd2e1SMark F. Adams     ierr = PetscLogEventEnd(petsc_gamg_setup_events[SET9],0,0,0,0);CHKERRQ(ierr);
13362e68589bSMark F. Adams #endif
13372e68589bSMark F. Adams   }
13380cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG
13390cbbd2e1SMark F. Adams   ierr = PetscLogEventEnd(PC_GAMGOptprol_AGG,0,0,0,0);CHKERRQ(ierr);
13400cbbd2e1SMark F. Adams #endif
1341c8b0795cSMark F. Adams   *a_P = Prol;
1342c8b0795cSMark F. Adams   PetscFunctionReturn(0);
13432e68589bSMark F. Adams }
13442e68589bSMark F. Adams 
1345c8b0795cSMark F. Adams /* -------------------------------------------------------------------------- */
1346c8b0795cSMark F. Adams /*
1347c8b0795cSMark F. Adams    PCCreateGAMG_AGG
13482e68589bSMark F. Adams 
1349c8b0795cSMark F. Adams   Input Parameter:
1350c8b0795cSMark F. Adams    . pc -
1351c8b0795cSMark F. Adams */
1352c8b0795cSMark F. Adams #undef __FUNCT__
1353c8b0795cSMark F. Adams #define __FUNCT__ "PCCreateGAMG_AGG"
1354c8b0795cSMark F. Adams PetscErrorCode  PCCreateGAMG_AGG(PC pc)
1355c8b0795cSMark F. Adams {
1356c8b0795cSMark F. Adams   PetscErrorCode ierr;
1357c8b0795cSMark F. Adams   PC_MG          *mg      = (PC_MG*)pc->data;
1358c8b0795cSMark F. Adams   PC_GAMG        *pc_gamg = (PC_GAMG*)mg->innerctx;
1359c8b0795cSMark F. Adams   PC_GAMG_AGG    *pc_gamg_agg;
13602e68589bSMark F. Adams 
1361c8b0795cSMark F. Adams   PetscFunctionBegin;
1362c8b0795cSMark F. Adams   /* create sub context for SA */
1363c8b0795cSMark F. Adams   ierr            = PetscNewLog(pc, PC_GAMG_AGG, &pc_gamg_agg);CHKERRQ(ierr);
1364c8b0795cSMark F. Adams   pc_gamg->subctx = pc_gamg_agg;
1365c8b0795cSMark F. Adams 
13661ab5ffc9SJed Brown   pc_gamg->ops->setfromoptions = PCSetFromOptions_GAMG_AGG;
13679b8ffb57SJed Brown   pc_gamg->ops->destroy        = PCDestroy_GAMG_AGG;
1368c8b0795cSMark F. Adams   /* reset does not do anything; setup not virtual */
1369c8b0795cSMark F. Adams 
1370c8b0795cSMark F. Adams   /* set internal function pointers */
13711ab5ffc9SJed Brown   pc_gamg->ops->graph       = PCGAMGgraph_AGG;
13721ab5ffc9SJed Brown   pc_gamg->ops->coarsen     = PCGAMGCoarsen_AGG;
13731ab5ffc9SJed Brown   pc_gamg->ops->prolongator = PCGAMGProlongator_AGG;
13741ab5ffc9SJed Brown   pc_gamg->ops->optprol     = PCGAMGOptprol_AGG;
1375c8b0795cSMark F. Adams 
13761ab5ffc9SJed Brown   pc_gamg->ops->createdefaultdata = PCSetData_AGG;
1377c8b0795cSMark F. Adams 
1378bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCSetCoordinates_C",PCSetCoordinates_AGG);CHKERRQ(ierr);
13792e68589bSMark F. Adams   PetscFunctionReturn(0);
13802e68589bSMark F. Adams }
1381