12e68589bSMark F. Adams /* 22e68589bSMark F. Adams GAMG geometric-algebric multiogrid PC - Mark Adams 2011 32e68589bSMark F. Adams */ 42e68589bSMark F. Adams 52e68589bSMark F. Adams #include <../src/ksp/pc/impls/gamg/gamg.h> /*I "petscpc.h" I*/ 6b45d2f2cSJed Brown #include <petsc-private/kspimpl.h> 72e68589bSMark F. Adams 82e68589bSMark F. Adams #include <petscblaslapack.h> 92e68589bSMark F. Adams 102e68589bSMark F. Adams typedef struct { 11c8b0795cSMark F. Adams PetscInt nsmooths; 12c8b0795cSMark F. Adams PetscBool sym_graph; 13ef4ad70eSMark F. Adams PetscBool square_graph; 142e68589bSMark F. Adams } PC_GAMG_AGG; 152e68589bSMark F. Adams 162e68589bSMark F. Adams #undef __FUNCT__ 172e68589bSMark F. Adams #define __FUNCT__ "PCGAMGSetNSmooths" 182e68589bSMark F. Adams /*@ 192e68589bSMark F. Adams PCGAMGSetNSmooths - Set number of smoothing steps (1 is typical) 202e68589bSMark F. Adams 212e68589bSMark F. Adams Not Collective on PC 222e68589bSMark F. Adams 232e68589bSMark F. Adams Input Parameters: 242e68589bSMark F. Adams . pc - the preconditioner context 252e68589bSMark F. Adams 262e68589bSMark F. Adams Options Database Key: 272e68589bSMark F. Adams . -pc_gamg_agg_nsmooths 282e68589bSMark F. Adams 292e68589bSMark F. Adams Level: intermediate 302e68589bSMark F. Adams 312e68589bSMark F. Adams Concepts: Aggregation AMG preconditioner 322e68589bSMark F. Adams 332e68589bSMark F. Adams .seealso: () 342e68589bSMark F. Adams @*/ 352e68589bSMark F. Adams PetscErrorCode PCGAMGSetNSmooths(PC pc, PetscInt n) 362e68589bSMark F. Adams { 372e68589bSMark F. Adams PetscErrorCode ierr; 382e68589bSMark F. Adams 392e68589bSMark F. Adams PetscFunctionBegin; 402e68589bSMark F. Adams PetscValidHeaderSpecific(pc,PC_CLASSID,1); 412e68589bSMark F. Adams ierr = PetscTryMethod(pc,"PCGAMGSetNSmooths_C",(PC,PetscInt),(pc,n));CHKERRQ(ierr); 422e68589bSMark F. Adams PetscFunctionReturn(0); 432e68589bSMark F. Adams } 442e68589bSMark F. Adams 452e68589bSMark F. Adams #undef __FUNCT__ 462e68589bSMark F. Adams #define __FUNCT__ "PCGAMGSetNSmooths_GAMG" 472e68589bSMark F. Adams PetscErrorCode PCGAMGSetNSmooths_GAMG(PC pc, PetscInt n) 482e68589bSMark F. Adams { 492e68589bSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 502e68589bSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 51c8b0795cSMark F. Adams PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx; 522e68589bSMark F. Adams 532e68589bSMark F. Adams PetscFunctionBegin; 54c8b0795cSMark F. Adams pc_gamg_agg->nsmooths = n; 55c8b0795cSMark F. Adams PetscFunctionReturn(0); 56c8b0795cSMark F. Adams } 57c8b0795cSMark F. Adams 58c8b0795cSMark F. Adams #undef __FUNCT__ 59c8b0795cSMark F. Adams #define __FUNCT__ "PCGAMGSetSymGraph" 60c8b0795cSMark F. Adams /*@ 61c8b0795cSMark F. Adams PCGAMGSetSymGraph - 62c8b0795cSMark F. Adams 63c8b0795cSMark F. Adams Not Collective on PC 64c8b0795cSMark F. Adams 65c8b0795cSMark F. Adams Input Parameters: 66c8b0795cSMark F. Adams . pc - the preconditioner context 67c8b0795cSMark F. Adams 68c8b0795cSMark F. Adams Options Database Key: 69c8b0795cSMark F. Adams . -pc_gamg_sym_graph 70c8b0795cSMark F. Adams 71c8b0795cSMark F. Adams Level: intermediate 72c8b0795cSMark F. Adams 73c8b0795cSMark F. Adams Concepts: Aggregation AMG preconditioner 74c8b0795cSMark F. Adams 75c8b0795cSMark F. Adams .seealso: () 76c8b0795cSMark F. Adams @*/ 77c8b0795cSMark F. Adams PetscErrorCode PCGAMGSetSymGraph(PC pc, PetscBool n) 78c8b0795cSMark F. Adams { 79c8b0795cSMark F. Adams PetscErrorCode ierr; 80c8b0795cSMark F. Adams 81c8b0795cSMark F. Adams PetscFunctionBegin; 82c8b0795cSMark F. Adams PetscValidHeaderSpecific(pc,PC_CLASSID,1); 83c8b0795cSMark F. Adams ierr = PetscTryMethod(pc,"PCGAMGSetSymGraph_C",(PC,PetscBool),(pc,n));CHKERRQ(ierr); 84c8b0795cSMark F. Adams PetscFunctionReturn(0); 85c8b0795cSMark F. Adams } 86c8b0795cSMark F. Adams 87c8b0795cSMark F. Adams #undef __FUNCT__ 88c8b0795cSMark F. Adams #define __FUNCT__ "PCGAMGSetSymGraph_GAMG" 89c8b0795cSMark F. Adams PetscErrorCode PCGAMGSetSymGraph_GAMG(PC pc, PetscBool n) 90c8b0795cSMark F. Adams { 91c8b0795cSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 92c8b0795cSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 93c8b0795cSMark F. Adams PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx; 94c8b0795cSMark F. Adams 95c8b0795cSMark F. Adams PetscFunctionBegin; 96c8b0795cSMark F. Adams pc_gamg_agg->sym_graph = n; 972e68589bSMark F. Adams PetscFunctionReturn(0); 982e68589bSMark F. Adams } 992e68589bSMark F. Adams 100ef4ad70eSMark F. Adams #undef __FUNCT__ 101ef4ad70eSMark F. Adams #define __FUNCT__ "PCGAMGSetSquareGraph" 102ef4ad70eSMark F. Adams /*@ 103ef4ad70eSMark F. Adams PCGAMGSetSquareGraph - 104ef4ad70eSMark F. Adams 105ef4ad70eSMark F. Adams Not Collective on PC 106ef4ad70eSMark F. Adams 107ef4ad70eSMark F. Adams Input Parameters: 108ef4ad70eSMark F. Adams . pc - the preconditioner context 109ef4ad70eSMark F. Adams 110ef4ad70eSMark F. Adams Options Database Key: 111ef4ad70eSMark F. Adams . -pc_gamg_square_graph 112ef4ad70eSMark F. Adams 113ef4ad70eSMark F. Adams Level: intermediate 114ef4ad70eSMark F. Adams 115ef4ad70eSMark F. Adams Concepts: Aggregation AMG preconditioner 116ef4ad70eSMark F. Adams 117ef4ad70eSMark F. Adams .seealso: () 118ef4ad70eSMark F. Adams @*/ 119ef4ad70eSMark F. Adams PetscErrorCode PCGAMGSetSquareGraph(PC pc, PetscBool n) 120ef4ad70eSMark F. Adams { 121ef4ad70eSMark F. Adams PetscErrorCode ierr; 122ef4ad70eSMark F. Adams 123ef4ad70eSMark F. Adams PetscFunctionBegin; 124ef4ad70eSMark F. Adams PetscValidHeaderSpecific(pc,PC_CLASSID,1); 125ef4ad70eSMark F. Adams ierr = PetscTryMethod(pc,"PCGAMGSetSquareGraph_C",(PC,PetscBool),(pc,n));CHKERRQ(ierr); 126ef4ad70eSMark F. Adams PetscFunctionReturn(0); 127ef4ad70eSMark F. Adams } 128ef4ad70eSMark F. Adams 129ef4ad70eSMark F. Adams #undef __FUNCT__ 130ef4ad70eSMark F. Adams #define __FUNCT__ "PCGAMGSetSquareGraph_GAMG" 131ef4ad70eSMark F. Adams PetscErrorCode PCGAMGSetSquareGraph_GAMG(PC pc, PetscBool n) 132ef4ad70eSMark F. Adams { 133ef4ad70eSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 134ef4ad70eSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 135ef4ad70eSMark F. Adams PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx; 136ef4ad70eSMark F. Adams 137ef4ad70eSMark F. Adams PetscFunctionBegin; 138ef4ad70eSMark F. Adams pc_gamg_agg->square_graph = n; 139ef4ad70eSMark F. Adams PetscFunctionReturn(0); 140ef4ad70eSMark F. Adams } 141ef4ad70eSMark F. Adams 1422e68589bSMark F. Adams /* -------------------------------------------------------------------------- */ 1432e68589bSMark F. Adams /* 1442e68589bSMark F. Adams PCSetFromOptions_GAMG_AGG 1452e68589bSMark F. Adams 1462e68589bSMark F. Adams Input Parameter: 1472e68589bSMark F. Adams . pc - 1482e68589bSMark F. Adams */ 1492e68589bSMark F. Adams #undef __FUNCT__ 1502e68589bSMark F. Adams #define __FUNCT__ "PCSetFromOptions_GAMG_AGG" 1512e68589bSMark F. Adams PetscErrorCode PCSetFromOptions_GAMG_AGG(PC pc) 1522e68589bSMark F. Adams { 1532e68589bSMark F. Adams PetscErrorCode ierr; 1542e68589bSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 1552e68589bSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 156c8b0795cSMark F. Adams PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx; 1572e68589bSMark F. Adams PetscBool flag; 1582e68589bSMark F. Adams 1592e68589bSMark F. Adams PetscFunctionBegin; 1602e68589bSMark F. Adams 1612e68589bSMark F. Adams ierr = PetscOptionsHead("GAMG-AGG options");CHKERRQ(ierr); 1622e68589bSMark F. Adams { 1632e68589bSMark F. Adams /* -pc_gamg_agg_nsmooths */ 164d3042614SMark Adams pc_gamg_agg->nsmooths = 1; 1652fa5cd67SKarl Rupp 1662e68589bSMark F. Adams ierr = PetscOptionsInt("-pc_gamg_agg_nsmooths", 1672e68589bSMark F. Adams "smoothing steps for smoothed aggregation, usually 1 (0)", 1682e68589bSMark F. Adams "PCGAMGSetNSmooths", 169c8b0795cSMark F. Adams pc_gamg_agg->nsmooths, 170c8b0795cSMark F. Adams &pc_gamg_agg->nsmooths, 171806fa848SBarry Smith &flag);CHKERRQ(ierr); 172c8b0795cSMark F. Adams 173c8b0795cSMark F. Adams /* -pc_gamg_sym_graph */ 174c8b0795cSMark F. Adams pc_gamg_agg->sym_graph = PETSC_FALSE; 1752fa5cd67SKarl Rupp 176c8b0795cSMark F. Adams ierr = PetscOptionsBool("-pc_gamg_sym_graph", 177581a99e3SJed Brown "Set for asymmetric matrices", 178c8b0795cSMark F. Adams "PCGAMGSetSymGraph", 179c8b0795cSMark F. Adams pc_gamg_agg->sym_graph, 180c8b0795cSMark F. Adams &pc_gamg_agg->sym_graph, 181806fa848SBarry Smith &flag);CHKERRQ(ierr); 182ef4ad70eSMark F. Adams 183ef4ad70eSMark F. Adams /* -pc_gamg_square_graph */ 184ef4ad70eSMark F. Adams pc_gamg_agg->square_graph = PETSC_TRUE; 1852fa5cd67SKarl Rupp 186ef4ad70eSMark F. Adams ierr = PetscOptionsBool("-pc_gamg_square_graph", 1870cbbd2e1SMark F. Adams "For faster coarsening and lower coarse grid complexity", 188ef4ad70eSMark F. Adams "PCGAMGSetSquareGraph", 189ef4ad70eSMark F. Adams pc_gamg_agg->square_graph, 190ef4ad70eSMark F. Adams &pc_gamg_agg->square_graph, 191806fa848SBarry Smith &flag);CHKERRQ(ierr); 1922e68589bSMark F. Adams } 1932e68589bSMark F. Adams ierr = PetscOptionsTail();CHKERRQ(ierr); 1942e68589bSMark F. Adams PetscFunctionReturn(0); 1952e68589bSMark F. Adams } 1962e68589bSMark F. Adams 1972e68589bSMark F. Adams /* -------------------------------------------------------------------------- */ 1982e68589bSMark F. Adams /* 1992e68589bSMark F. Adams PCDestroy_AGG 2002e68589bSMark F. Adams 2012e68589bSMark F. Adams Input Parameter: 2022e68589bSMark F. Adams . pc - 2032e68589bSMark F. Adams */ 2042e68589bSMark F. Adams #undef __FUNCT__ 2059b8ffb57SJed Brown #define __FUNCT__ "PCDestroy_GAMG_AGG" 2069b8ffb57SJed Brown PetscErrorCode PCDestroy_GAMG_AGG(PC pc) 2072e68589bSMark F. Adams { 2082e68589bSMark F. Adams PetscErrorCode ierr; 2092e68589bSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 2102e68589bSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 2112e68589bSMark F. Adams 2122e68589bSMark F. Adams PetscFunctionBegin; 2139b8ffb57SJed Brown ierr = PetscFree(pc_gamg->subctx);CHKERRQ(ierr); 2142e68589bSMark F. Adams PetscFunctionReturn(0); 2152e68589bSMark F. Adams } 2162e68589bSMark F. Adams 2172e68589bSMark F. Adams /* -------------------------------------------------------------------------- */ 2182e68589bSMark F. Adams /* 2192e68589bSMark F. Adams PCSetCoordinates_AGG 220302f38e8SMark F. Adams - collective 2212e68589bSMark F. Adams 2222e68589bSMark F. Adams Input Parameter: 2232e68589bSMark F. Adams . pc - the preconditioner context 224a2f3521dSMark F. Adams . ndm - dimesion of data (used for dof/vertex for Stokes) 225302f38e8SMark F. Adams . a_nloc - number of vertices local 226302f38e8SMark F. Adams . coords - [a_nloc][ndm] - interleaved coordinate data: {x_0, y_0, z_0, x_1, y_1, ...} 2272e68589bSMark F. Adams */ 2281e6b0712SBarry Smith 2292e68589bSMark F. Adams #undef __FUNCT__ 2302e68589bSMark F. Adams #define __FUNCT__ "PCSetCoordinates_AGG" 2311e6b0712SBarry Smith static PetscErrorCode PCSetCoordinates_AGG(PC pc, PetscInt ndm, PetscInt a_nloc, PetscReal *coords) 2322e68589bSMark F. Adams { 2332e68589bSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 2342e68589bSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 2352e68589bSMark F. Adams PetscErrorCode ierr; 23669344418SMark F. Adams PetscInt arrsz,kk,ii,jj,nloc,ndatarows,ndf; 237a2f3521dSMark F. Adams Mat mat = pc->pmat; 2382e68589bSMark F. Adams 2392e68589bSMark F. Adams PetscFunctionBegin; 240a2f3521dSMark F. Adams PetscValidHeaderSpecific(pc,PC_CLASSID,1); 241a2f3521dSMark F. Adams PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 242302f38e8SMark F. Adams nloc = a_nloc; 2432e68589bSMark F. Adams 2442e68589bSMark F. Adams /* SA: null space vectors */ 24569344418SMark F. Adams ierr = MatGetBlockSize(mat, &ndf);CHKERRQ(ierr); /* this does not work for Stokes */ 24669344418SMark F. Adams if (coords && ndf==1) pc_gamg->data_cell_cols = 1; /* scalar w/ coords and SA (not needed) */ 247a2f3521dSMark F. Adams else if (coords) { 248c666adbfSMark F. Adams if (ndm > ndf) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"degrees of motion %d > block size %d",ndm,ndf); 24969344418SMark F. Adams pc_gamg->data_cell_cols = (ndm==2 ? 3 : 6); /* displacement elasticity */ 25069344418SMark F. Adams if (ndm != ndf) { 251c666adbfSMark F. Adams if (pc_gamg->data_cell_cols != ndf) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Don't know how to create null space for ndm=%d, ndf=%d. Use MatSetNearNullSpace.",ndm,ndf); 252a2f3521dSMark F. Adams } 253806fa848SBarry Smith } else pc_gamg->data_cell_cols = ndf; /* no data, force SA with constant null space vectors */ 25471959b99SBarry Smith pc_gamg->data_cell_rows = ndatarows = ndf; 25571959b99SBarry Smith if (pc_gamg->data_cell_cols <= 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"pc_gamg->data_cell_cols %D <= 0",pc_gamg->data_cell_cols); 256c8b0795cSMark F. Adams arrsz = nloc*pc_gamg->data_cell_rows*pc_gamg->data_cell_cols; 2572e68589bSMark F. Adams 2582e68589bSMark F. Adams /* create data - syntactic sugar that should be refactored at some point */ 2592e68589bSMark F. Adams if (pc_gamg->data==0 || (pc_gamg->data_sz != arrsz)) { 2602e68589bSMark F. Adams ierr = PetscFree(pc_gamg->data);CHKERRQ(ierr); 261302f38e8SMark F. Adams ierr = PetscMalloc((arrsz+1)*sizeof(PetscReal), &pc_gamg->data);CHKERRQ(ierr); 2622e68589bSMark F. Adams } 2632e68589bSMark F. Adams /* copy data in - column oriented */ 2642e68589bSMark F. Adams for (kk=0; kk<nloc; kk++) { 26569344418SMark F. Adams const PetscInt M = nloc*pc_gamg->data_cell_rows; /* stride into data */ 26669344418SMark F. Adams PetscReal *data = &pc_gamg->data[kk*ndatarows]; /* start of cell */ 267c8b0795cSMark F. Adams if (pc_gamg->data_cell_cols==1) *data = 1.0; 2682e68589bSMark F. Adams else { 26969344418SMark F. Adams /* translational modes */ 2702fa5cd67SKarl Rupp for (ii=0;ii<ndatarows;ii++) { 2712fa5cd67SKarl Rupp for (jj=0;jj<ndatarows;jj++) { 27269344418SMark F. Adams if (ii==jj)data[ii*M + jj] = 1.0; 2732e68589bSMark F. Adams else data[ii*M + jj] = 0.0; 2742fa5cd67SKarl Rupp } 2752fa5cd67SKarl Rupp } 27669344418SMark F. Adams 27769344418SMark F. Adams /* rotational modes */ 2782e68589bSMark F. Adams if (coords) { 27969344418SMark F. Adams if (ndm == 2) { 2802e68589bSMark F. Adams data += 2*M; 2812e68589bSMark F. Adams data[0] = -coords[2*kk+1]; 2822e68589bSMark F. Adams data[1] = coords[2*kk]; 283806fa848SBarry Smith } else { 2842e68589bSMark F. Adams data += 3*M; 2852e68589bSMark F. Adams data[0] = 0.0; data[M+0] = coords[3*kk+2]; data[2*M+0] = -coords[3*kk+1]; 2862e68589bSMark F. Adams data[1] = -coords[3*kk+2]; data[M+1] = 0.0; data[2*M+1] = coords[3*kk]; 2872e68589bSMark F. Adams data[2] = coords[3*kk+1]; data[M+2] = -coords[3*kk]; data[2*M+2] = 0.0; 2882e68589bSMark F. Adams } 2892e68589bSMark F. Adams } 2902e68589bSMark F. Adams } 2912e68589bSMark F. Adams } 2922e68589bSMark F. Adams 2932e68589bSMark F. Adams pc_gamg->data_sz = arrsz; 2942e68589bSMark F. Adams PetscFunctionReturn(0); 2952e68589bSMark F. Adams } 2962e68589bSMark F. Adams 297b43b03e9SMark F. Adams typedef PetscInt NState; 298b43b03e9SMark F. Adams static const NState NOT_DONE=-2; 299b43b03e9SMark F. Adams static const NState DELETED =-1; 300b43b03e9SMark F. Adams static const NState REMOVED =-3; 301b43b03e9SMark F. Adams #define IS_SELECTED(s) (s!=DELETED && s!=NOT_DONE && s!=REMOVED) 302b43b03e9SMark F. Adams 303c8b0795cSMark F. Adams /* -------------------------------------------------------------------------- */ 304c8b0795cSMark F. Adams /* 305b43b03e9SMark F. Adams smoothAggs - greedy grab of with G1 (unsquared graph) -- AIJ specific 306b43b03e9SMark F. Adams - AGG-MG specific: clears singletons out of 'selected_2' 307c8b0795cSMark F. Adams 308c8b0795cSMark F. Adams Input Parameter: 309c8b0795cSMark F. Adams . Gmat_2 - glabal matrix of graph (data not defined) 310c8b0795cSMark F. Adams . Gmat_1 - base graph to grab with 311c8b0795cSMark F. Adams Input/Output Parameter: 3120cbbd2e1SMark F. Adams . aggs_2 - linked list of aggs with gids) 313c8b0795cSMark F. Adams */ 314c8b0795cSMark F. Adams #undef __FUNCT__ 315c8b0795cSMark F. Adams #define __FUNCT__ "smoothAggs" 3160cbbd2e1SMark F. Adams static PetscErrorCode smoothAggs(const Mat Gmat_2, /* base (squared) graph */ 3170cbbd2e1SMark F. Adams const Mat Gmat_1, /* base graph */ 3180cbbd2e1SMark F. Adams /* const IS selected_2, [nselected local] selected vertices */ 3191147fc2aSKarl Rupp PetscCoarsenData *aggs_2) /* [nselected local] global ID of aggregate */ 320c8b0795cSMark F. Adams { 321c8b0795cSMark F. Adams PetscErrorCode ierr; 322c8b0795cSMark F. Adams PetscBool isMPI; 323c8b0795cSMark F. Adams Mat_SeqAIJ *matA_1, *matB_1=0, *matA_2, *matB_2=0; 3243b4367a7SBarry Smith MPI_Comm comm; 325c5df96a5SBarry Smith PetscMPIInt rank,size; 3260cbbd2e1SMark F. Adams PetscInt lid,*ii,*idx,ix,Iend,my0,kk,n,j; 327c8b0795cSMark F. Adams Mat_MPIAIJ *mpimat_2 = 0, *mpimat_1=0; 328c8b0795cSMark F. Adams const PetscInt nloc = Gmat_2->rmap->n; 3290cbbd2e1SMark F. Adams PetscScalar *cpcol_1_state,*cpcol_2_state,*cpcol_2_par_orig,*lid_parent_gid; 3300cbbd2e1SMark F. Adams PetscInt *lid_cprowID_1; 331c8b0795cSMark F. Adams NState *lid_state; 3320cbbd2e1SMark F. Adams Vec ghost_par_orig2; 333c8b0795cSMark F. Adams 334c8b0795cSMark F. Adams PetscFunctionBegin; 3353b4367a7SBarry Smith ierr = PetscObjectGetComm((PetscObject)Gmat_2,&comm);CHKERRQ(ierr); 3363b4367a7SBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 3373b4367a7SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 338c8b0795cSMark F. Adams ierr = MatGetOwnershipRange(Gmat_1,&my0,&Iend);CHKERRQ(ierr); 339c8b0795cSMark F. Adams 3400cbbd2e1SMark F. Adams if (PETSC_FALSE) { 341c8b0795cSMark F. Adams PetscViewer viewer; char fname[32]; static int llev=0; 342c8b0795cSMark F. Adams sprintf(fname,"Gmat2_%d.m",llev++); 3433b4367a7SBarry Smith PetscViewerASCIIOpen(comm,fname,&viewer); 344c8b0795cSMark F. Adams ierr = PetscViewerSetFormat(viewer, PETSC_VIEWER_ASCII_MATLAB);CHKERRQ(ierr); 345c8b0795cSMark F. Adams ierr = MatView(Gmat_2, viewer);CHKERRQ(ierr); 346c8b0795cSMark F. Adams ierr = PetscViewerDestroy(&viewer); 347c8b0795cSMark F. Adams } 348c8b0795cSMark F. Adams 349c8b0795cSMark F. Adams /* get submatrices */ 350251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)Gmat_1, MATMPIAIJ, &isMPI);CHKERRQ(ierr); 351c8b0795cSMark F. Adams if (isMPI) { 352c8b0795cSMark F. Adams /* grab matrix objects */ 353c8b0795cSMark F. Adams mpimat_2 = (Mat_MPIAIJ*)Gmat_2->data; 354c8b0795cSMark F. Adams mpimat_1 = (Mat_MPIAIJ*)Gmat_1->data; 355c8b0795cSMark F. Adams matA_1 = (Mat_SeqAIJ*)mpimat_1->A->data; 356c8b0795cSMark F. Adams matB_1 = (Mat_SeqAIJ*)mpimat_1->B->data; 357c8b0795cSMark F. Adams matA_2 = (Mat_SeqAIJ*)mpimat_2->A->data; 358c8b0795cSMark F. Adams matB_2 = (Mat_SeqAIJ*)mpimat_2->B->data; 359c8b0795cSMark F. Adams 360c8b0795cSMark F. Adams /* force compressed row storage for B matrix in AuxMat */ 361*11e456e1SBarry Smith ierr = MatCheckCompressedRow(mpimat_1->B,matB_1->nonzerorowcnt,&matB_1->compressedrow,matB_1->i,Gmat_1->rmap->n,-1.0);CHKERRQ(ierr); 362c8b0795cSMark F. Adams 363c8b0795cSMark F. Adams ierr = PetscMalloc(nloc*sizeof(PetscInt), &lid_cprowID_1);CHKERRQ(ierr); 3640cbbd2e1SMark F. Adams for (lid = 0; lid < nloc; lid++) lid_cprowID_1[lid] = -1; 365c8b0795cSMark F. Adams for (ix=0; ix<matB_1->compressedrow.nrows; ix++) { 366c8b0795cSMark F. Adams PetscInt lid = matB_1->compressedrow.rindex[ix]; 367c8b0795cSMark F. Adams lid_cprowID_1[lid] = ix; 368c8b0795cSMark F. Adams } 369806fa848SBarry Smith } else { 370c8b0795cSMark F. Adams matA_1 = (Mat_SeqAIJ*)Gmat_1->data; 371c8b0795cSMark F. Adams matA_2 = (Mat_SeqAIJ*)Gmat_2->data; 3720298fd71SBarry Smith lid_cprowID_1 = NULL; 373c8b0795cSMark F. Adams } 37471959b99SBarry Smith if (!(matA_1 && !matA_1->compressedrow.use)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"!(matA_1 && !matA_1->compressedrow.use)"); 37571959b99SBarry Smith if (!(matB_1==0 || matB_1->compressedrow.use)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"!(matB_1==0 || matB_1->compressedrow.use)"); 37671959b99SBarry Smith if (!(matA_2 && !matA_2->compressedrow.use)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"!(matA_2 && !matA_2->compressedrow.use)"); 37771959b99SBarry Smith if (!(matB_2==0 || matB_2->compressedrow.use)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"!(matB_2==0 || matB_2->compressedrow.use)"); 378c8b0795cSMark F. Adams 379c8b0795cSMark F. Adams /* get state of locals and selected gid for deleted */ 380c8b0795cSMark F. Adams ierr = PetscMalloc(nloc*sizeof(NState), &lid_state);CHKERRQ(ierr); 3810cbbd2e1SMark F. Adams ierr = PetscMalloc(nloc*sizeof(PetscScalar), &lid_parent_gid);CHKERRQ(ierr); 382c8b0795cSMark F. Adams for (lid = 0; lid < nloc; lid++) { 3830cbbd2e1SMark F. Adams lid_parent_gid[lid] = -1.0; 384c8b0795cSMark F. Adams lid_state[lid] = DELETED; 385c8b0795cSMark F. Adams } 3860cbbd2e1SMark F. Adams 3870cbbd2e1SMark F. Adams /* set lid_state */ 3880cbbd2e1SMark F. Adams for (lid = 0; lid < nloc; lid++) { 38941b27cdeSMark F. Adams PetscCDPos pos; 390e78576d6SMark F. Adams ierr = PetscCDGetHeadPos(aggs_2,lid,&pos);CHKERRQ(ierr); 391e78576d6SMark F. Adams if (pos) { 392e78576d6SMark F. Adams PetscInt gid1; 3932fa5cd67SKarl Rupp 39471959b99SBarry Smith ierr = PetscLLNGetID(pos, &gid1);CHKERRQ(ierr); 39571959b99SBarry Smith if (gid1 != lid+my0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"gid1 %D != lid %D + my0 %D",gid1,lid,my0); 3960cbbd2e1SMark F. Adams lid_state[lid] = gid1; 397b43b03e9SMark F. Adams } 398b43b03e9SMark F. Adams } 3990cbbd2e1SMark F. Adams 4000cbbd2e1SMark F. Adams /* map local to selected local, DELETED means a ghost owns it */ 401c8b0795cSMark F. Adams for (lid=kk=0; lid<nloc; lid++) { 402c8b0795cSMark F. Adams NState state = lid_state[lid]; 403c8b0795cSMark F. Adams if (IS_SELECTED(state)) { 40441b27cdeSMark F. Adams PetscCDPos pos; 405e78576d6SMark F. Adams ierr = PetscCDGetHeadPos(aggs_2,lid,&pos);CHKERRQ(ierr); 406e78576d6SMark F. Adams while (pos) { 407e78576d6SMark F. Adams PetscInt gid1; 408ffc955d6SMark F. Adams ierr = PetscLLNGetID(pos, &gid1);CHKERRQ(ierr); 409e78576d6SMark F. Adams ierr = PetscCDGetNextPos(aggs_2,lid,&pos);CHKERRQ(ierr); 410e78576d6SMark F. Adams 4112fa5cd67SKarl Rupp if (gid1 >= my0 && gid1 < Iend) lid_parent_gid[gid1-my0] = (PetscScalar)(lid + my0); 412c8b0795cSMark F. Adams } 4130cbbd2e1SMark F. Adams } 4140cbbd2e1SMark F. Adams } 4150cbbd2e1SMark F. Adams /* get 'cpcol_1/2_state' & cpcol_2_par_orig - uses mpimat_1/2->lvec for temp space */ 416c8b0795cSMark F. Adams if (isMPI) { 417c8b0795cSMark F. Adams Vec tempVec; 418c8b0795cSMark F. Adams /* get 'cpcol_1_state' */ 419c8b0795cSMark F. Adams ierr = MatGetVecs(Gmat_1, &tempVec, 0);CHKERRQ(ierr); 420c8b0795cSMark F. Adams for (kk=0,j=my0; kk<nloc; kk++,j++) { 421c8b0795cSMark F. Adams PetscScalar v = (PetscScalar)lid_state[kk]; 422c8b0795cSMark F. Adams ierr = VecSetValues(tempVec, 1, &j, &v, INSERT_VALUES);CHKERRQ(ierr); 423c8b0795cSMark F. Adams } 424c8b0795cSMark F. Adams ierr = VecAssemblyBegin(tempVec);CHKERRQ(ierr); 425c8b0795cSMark F. Adams ierr = VecAssemblyEnd(tempVec);CHKERRQ(ierr); 426806fa848SBarry Smith ierr = VecScatterBegin(mpimat_1->Mvctx,tempVec, mpimat_1->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 427806fa848SBarry Smith ierr = VecScatterEnd(mpimat_1->Mvctx,tempVec, mpimat_1->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 428c8b0795cSMark F. Adams ierr = VecGetArray(mpimat_1->lvec, &cpcol_1_state);CHKERRQ(ierr); 429c8b0795cSMark F. Adams /* get 'cpcol_2_state' */ 430806fa848SBarry Smith ierr = VecScatterBegin(mpimat_2->Mvctx,tempVec, mpimat_2->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 431806fa848SBarry Smith ierr = VecScatterEnd(mpimat_2->Mvctx,tempVec, mpimat_2->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 432c8b0795cSMark F. Adams ierr = VecGetArray(mpimat_2->lvec, &cpcol_2_state);CHKERRQ(ierr); 4330cbbd2e1SMark F. Adams /* get 'cpcol_2_par_orig' */ 4340cbbd2e1SMark F. Adams for (kk=0,j=my0; kk<nloc; kk++,j++) { 4350cbbd2e1SMark F. Adams PetscScalar v = (PetscScalar)lid_parent_gid[kk]; 4360cbbd2e1SMark F. Adams ierr = VecSetValues(tempVec, 1, &j, &v, INSERT_VALUES);CHKERRQ(ierr); 4370cbbd2e1SMark F. Adams } 4380cbbd2e1SMark F. Adams ierr = VecAssemblyBegin(tempVec);CHKERRQ(ierr); 4390cbbd2e1SMark F. Adams ierr = VecAssemblyEnd(tempVec);CHKERRQ(ierr); 4400cbbd2e1SMark F. Adams ierr = VecDuplicate(mpimat_2->lvec, &ghost_par_orig2);CHKERRQ(ierr); 441806fa848SBarry Smith ierr = VecScatterBegin(mpimat_2->Mvctx,tempVec, ghost_par_orig2,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 442806fa848SBarry Smith ierr = VecScatterEnd(mpimat_2->Mvctx,tempVec, ghost_par_orig2,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 4430cbbd2e1SMark F. Adams ierr = VecGetArray(ghost_par_orig2, &cpcol_2_par_orig);CHKERRQ(ierr); 4440cbbd2e1SMark F. Adams 445c8b0795cSMark F. Adams ierr = VecDestroy(&tempVec);CHKERRQ(ierr); 446c8b0795cSMark F. Adams } /* ismpi */ 447c8b0795cSMark F. Adams 448c8b0795cSMark F. Adams /* doit */ 449c8b0795cSMark F. Adams for (lid=0; lid<nloc; lid++) { 450c8b0795cSMark F. Adams NState state = lid_state[lid]; 4510cbbd2e1SMark F. Adams if (IS_SELECTED(state)) { 4520cbbd2e1SMark F. Adams /* steal locals */ 453c8b0795cSMark F. Adams ii = matA_1->i; n = ii[lid+1] - ii[lid]; 454c8b0795cSMark F. Adams idx = matA_1->j + ii[lid]; 455c8b0795cSMark F. Adams for (j=0; j<n; j++) { 4560cbbd2e1SMark F. Adams PetscInt lidj = idx[j], sgid; 457c8b0795cSMark F. Adams NState statej = lid_state[lidj]; 4580cbbd2e1SMark F. Adams if (statej==DELETED && (sgid=(PetscInt)PetscRealPart(lid_parent_gid[lidj])) != lid+my0) { /* steal local */ 4590cbbd2e1SMark F. Adams lid_parent_gid[lidj] = (PetscScalar)(lid+my0); /* send this if sgid is not local */ 4600cbbd2e1SMark F. Adams if (sgid >= my0 && sgid < Iend) { /* I'm stealing this local from a local sgid */ 4610cbbd2e1SMark F. Adams PetscInt hav=0,slid=sgid-my0,gidj=lidj+my0; 4620298fd71SBarry Smith PetscCDPos pos,last=NULL; 463c8b0795cSMark F. Adams /* looking for local from local so id_llist_2 works */ 464e78576d6SMark F. Adams ierr = PetscCDGetHeadPos(aggs_2,slid,&pos);CHKERRQ(ierr); 465e78576d6SMark F. Adams while (pos) { 466e78576d6SMark F. Adams PetscInt gid; 467ffc955d6SMark F. Adams ierr = PetscLLNGetID(pos, &gid);CHKERRQ(ierr); 4680cbbd2e1SMark F. Adams if (gid == gidj) { 46971959b99SBarry Smith if (!last) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"last cannot be null"); 47041b27cdeSMark F. Adams ierr = PetscCDRemoveNextNode(aggs_2, slid, last);CHKERRQ(ierr); 47141b27cdeSMark F. Adams ierr = PetscCDAppendNode(aggs_2, lid, pos);CHKERRQ(ierr); 4720cbbd2e1SMark F. Adams hav = 1; 473c8b0795cSMark F. Adams break; 474806fa848SBarry Smith } else last = pos; 475e78576d6SMark F. Adams 476e78576d6SMark F. Adams ierr = PetscCDGetNextPos(aggs_2,slid,&pos);CHKERRQ(ierr); 477c8b0795cSMark F. Adams } 478c8b0795cSMark F. Adams if (hav!=1) { 47971959b99SBarry Smith if (!hav) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"failed to find adj in 'selected' lists - structurally unsymmetric matrix"); 480c666adbfSMark F. Adams SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"found node %d times???",hav); 481c8b0795cSMark F. Adams } 482806fa848SBarry Smith } else { /* I'm stealing this local, owned by a ghost */ 4832fa5cd67SKarl Rupp if (sgid != -1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Have un-symmetric graph (apparently). Use '-pc_gamg_sym_graph true' to symetrize the graph or '-pc_gamg_threshold 0.0' if the matrix is structurally symmetric."); 48441b27cdeSMark F. Adams ierr = PetscCDAppendID(aggs_2, lid, lidj+my0);CHKERRQ(ierr); 485c8b0795cSMark F. Adams } 486c8b0795cSMark F. Adams } 4870cbbd2e1SMark F. Adams } /* local neighbors */ 488806fa848SBarry Smith } else if (state == DELETED && lid_cprowID_1) { 4890cbbd2e1SMark F. Adams PetscInt sgidold = (PetscInt)PetscRealPart(lid_parent_gid[lid]); 490c8b0795cSMark F. Adams /* see if I have a selected ghost neighbor that will steal me */ 491c8b0795cSMark F. Adams if ((ix=lid_cprowID_1[lid]) != -1) { 492c8b0795cSMark F. Adams ii = matB_1->compressedrow.i; n = ii[ix+1] - ii[ix]; 493c8b0795cSMark F. Adams idx = matB_1->j + ii[ix]; 494c8b0795cSMark F. Adams for (j=0; j<n; j++) { 495c8b0795cSMark F. Adams PetscInt cpid = idx[j]; 496c8b0795cSMark F. Adams NState statej = (NState)PetscRealPart(cpcol_1_state[cpid]); 497c8b0795cSMark F. Adams if (IS_SELECTED(statej) && sgidold != (PetscInt)statej) { /* ghost will steal this, remove from my list */ 4980cbbd2e1SMark F. Adams lid_parent_gid[lid] = (PetscScalar)statej; /* send who selected */ 4990cbbd2e1SMark F. Adams if (sgidold>=my0 && sgidold<Iend) { /* this was mine */ 5000cbbd2e1SMark F. Adams PetscInt hav=0,oldslidj=sgidold-my0; 5010298fd71SBarry Smith PetscCDPos pos,last=NULL; 5020cbbd2e1SMark F. Adams /* remove from 'oldslidj' list */ 503e78576d6SMark F. Adams ierr = PetscCDGetHeadPos(aggs_2,oldslidj,&pos);CHKERRQ(ierr); 504e78576d6SMark F. Adams while (pos) { 505e78576d6SMark F. Adams PetscInt gid; 506ffc955d6SMark F. Adams ierr = PetscLLNGetID(pos, &gid);CHKERRQ(ierr); 5070cbbd2e1SMark F. Adams if (lid+my0 == gid) { 5080cbbd2e1SMark F. Adams /* id_llist_2[lastid] = id_llist_2[flid]; /\* remove lid from oldslidj list *\/ */ 50971959b99SBarry Smith if (!last) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"last cannot be null"); 51041b27cdeSMark F. Adams ierr = PetscCDRemoveNextNode(aggs_2, oldslidj, last);CHKERRQ(ierr); 5110cbbd2e1SMark F. Adams /* ghost (PetscScalar)statej will add this later */ 5120cbbd2e1SMark F. Adams hav = 1; 513c8b0795cSMark F. Adams break; 514806fa848SBarry Smith } else last = pos; 515e78576d6SMark F. Adams 516e78576d6SMark F. Adams ierr = PetscCDGetNextPos(aggs_2,oldslidj,&pos);CHKERRQ(ierr); 517c8b0795cSMark F. Adams } 518c8b0795cSMark F. Adams if (hav!=1) { 519c666adbfSMark F. Adams if (hav==0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"failed to find adj in 'selected' lists - structurally unsymmetric matrix"); 520c666adbfSMark F. Adams SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"found node %d times???",hav); 521c8b0795cSMark F. Adams } 522806fa848SBarry Smith } else { 5230cbbd2e1SMark F. Adams /* ghosts remove this later */ 5240cbbd2e1SMark F. Adams } 525c8b0795cSMark F. Adams } 526c8b0795cSMark F. Adams } 527c8b0795cSMark F. Adams } 528c8b0795cSMark F. Adams } /* selected/deleted */ 529c8b0795cSMark F. Adams } /* node loop */ 530c8b0795cSMark F. Adams 531c8b0795cSMark F. Adams if (isMPI) { 5320cbbd2e1SMark F. Adams PetscScalar *cpcol_2_parent,*cpcol_2_gid; 5330cbbd2e1SMark F. Adams Vec tempVec,ghostgids2,ghostparents2; 5340cbbd2e1SMark F. Adams PetscInt cpid,nghost_2; 5350cbbd2e1SMark F. Adams GAMGHashTable gid_cpid; 536c8b0795cSMark F. Adams 5370cbbd2e1SMark F. Adams ierr = VecGetSize(mpimat_2->lvec, &nghost_2);CHKERRQ(ierr); 538c8b0795cSMark F. Adams ierr = MatGetVecs(Gmat_2, &tempVec, 0);CHKERRQ(ierr); 5390cbbd2e1SMark F. Adams 5400cbbd2e1SMark F. Adams /* get 'cpcol_2_parent' */ 541c8b0795cSMark F. Adams for (kk=0,j=my0; kk<nloc; kk++,j++) { 5420cbbd2e1SMark F. Adams ierr = VecSetValues(tempVec, 1, &j, &lid_parent_gid[kk], INSERT_VALUES);CHKERRQ(ierr); 543c8b0795cSMark F. Adams } 544c8b0795cSMark F. Adams ierr = VecAssemblyBegin(tempVec);CHKERRQ(ierr); 545c8b0795cSMark F. Adams ierr = VecAssemblyEnd(tempVec);CHKERRQ(ierr); 5460cbbd2e1SMark F. Adams ierr = VecDuplicate(mpimat_2->lvec, &ghostparents2);CHKERRQ(ierr); 547806fa848SBarry Smith ierr = VecScatterBegin(mpimat_2->Mvctx,tempVec, ghostparents2,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 548806fa848SBarry Smith ierr = VecScatterEnd(mpimat_2->Mvctx,tempVec, ghostparents2,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 5490cbbd2e1SMark F. Adams ierr = VecGetArray(ghostparents2, &cpcol_2_parent);CHKERRQ(ierr); 5500cbbd2e1SMark F. Adams 5510cbbd2e1SMark F. Adams /* get 'cpcol_2_gid' */ 5520cbbd2e1SMark F. Adams for (kk=0,j=my0; kk<nloc; kk++,j++) { 5530cbbd2e1SMark F. Adams PetscScalar v = (PetscScalar)j; 5540cbbd2e1SMark F. Adams ierr = VecSetValues(tempVec, 1, &j, &v, INSERT_VALUES);CHKERRQ(ierr); 5550cbbd2e1SMark F. Adams } 5560cbbd2e1SMark F. Adams ierr = VecAssemblyBegin(tempVec);CHKERRQ(ierr); 5570cbbd2e1SMark F. Adams ierr = VecAssemblyEnd(tempVec);CHKERRQ(ierr); 5580cbbd2e1SMark F. Adams ierr = VecDuplicate(mpimat_2->lvec, &ghostgids2);CHKERRQ(ierr); 559806fa848SBarry Smith ierr = VecScatterBegin(mpimat_2->Mvctx,tempVec, ghostgids2,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 560806fa848SBarry Smith ierr = VecScatterEnd(mpimat_2->Mvctx,tempVec, ghostgids2,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 5610cbbd2e1SMark F. Adams ierr = VecGetArray(ghostgids2, &cpcol_2_gid);CHKERRQ(ierr); 5620cbbd2e1SMark F. Adams 563c8b0795cSMark F. Adams ierr = VecDestroy(&tempVec);CHKERRQ(ierr); 564c8b0795cSMark F. Adams 5650cbbd2e1SMark F. Adams /* look for deleted ghosts and add to table */ 566f10ff945SMark F. Adams ierr = GAMGTableCreate(2*nghost_2+1, &gid_cpid);CHKERRQ(ierr); 5670cbbd2e1SMark F. Adams for (cpid = 0; cpid < nghost_2; cpid++) { 5680cbbd2e1SMark F. Adams NState state = (NState)PetscRealPart(cpcol_2_state[cpid]); 5690cbbd2e1SMark F. Adams if (state==DELETED) { 5700cbbd2e1SMark F. Adams PetscInt sgid_new = (PetscInt)PetscRealPart(cpcol_2_parent[cpid]); 5710cbbd2e1SMark F. Adams PetscInt sgid_old = (PetscInt)PetscRealPart(cpcol_2_par_orig[cpid]); 5720cbbd2e1SMark F. Adams if (sgid_old == -1 && sgid_new != -1) { 5730cbbd2e1SMark F. Adams PetscInt gid = (PetscInt)PetscRealPart(cpcol_2_gid[cpid]); 5740cbbd2e1SMark F. Adams ierr = GAMGTableAdd(&gid_cpid, gid, cpid);CHKERRQ(ierr); 5750cbbd2e1SMark F. Adams } 5760cbbd2e1SMark F. Adams } 5770cbbd2e1SMark F. Adams } 578c8b0795cSMark F. Adams 5790cbbd2e1SMark F. Adams /* look for deleted ghosts and see if they moved - remove it */ 580c8b0795cSMark F. Adams for (lid=0; lid<nloc; lid++) { 581c8b0795cSMark F. Adams NState state = lid_state[lid]; 582c8b0795cSMark F. Adams if (IS_SELECTED(state)) { 5830298fd71SBarry Smith PetscCDPos pos,last=NULL; 584c8b0795cSMark F. Adams /* look for deleted ghosts and see if they moved */ 585e78576d6SMark F. Adams ierr = PetscCDGetHeadPos(aggs_2,lid,&pos);CHKERRQ(ierr); 586e78576d6SMark F. Adams while (pos) { 587e78576d6SMark F. Adams PetscInt gid; 588ffc955d6SMark F. Adams ierr = PetscLLNGetID(pos, &gid);CHKERRQ(ierr); 589e78576d6SMark F. Adams 5900cbbd2e1SMark F. Adams if (gid < my0 || gid >= Iend) { 5910cbbd2e1SMark F. Adams ierr = GAMGTableFind(&gid_cpid, gid, &cpid);CHKERRQ(ierr); 5920cbbd2e1SMark F. Adams if (cpid != -1) { 5930cbbd2e1SMark F. Adams /* a moved ghost - */ 5940cbbd2e1SMark F. Adams /* id_llist_2[lastid] = id_llist_2[flid]; /\* remove 'flid' from list *\/ */ 59541b27cdeSMark F. Adams ierr = PetscCDRemoveNextNode(aggs_2, lid, last);CHKERRQ(ierr); 596806fa848SBarry Smith } else last = pos; 597806fa848SBarry Smith } else last = pos; 598e78576d6SMark F. Adams 599e78576d6SMark F. Adams ierr = PetscCDGetNextPos(aggs_2,lid,&pos);CHKERRQ(ierr); 600c8b0795cSMark F. Adams } /* loop over list of deleted */ 601c8b0795cSMark F. Adams } /* selected */ 602c8b0795cSMark F. Adams } 6030cbbd2e1SMark F. Adams ierr = GAMGTableDestroy(&gid_cpid);CHKERRQ(ierr); 604c8b0795cSMark F. Adams 6050cbbd2e1SMark F. Adams /* look at ghosts, see if they changed - and it */ 6060cbbd2e1SMark F. Adams for (cpid = 0; cpid < nghost_2; cpid++) { 6070cbbd2e1SMark F. Adams PetscInt sgid_new = (PetscInt)PetscRealPart(cpcol_2_parent[cpid]); 6080cbbd2e1SMark F. Adams if (sgid_new >= my0 && sgid_new < Iend) { /* this is mine */ 6090cbbd2e1SMark F. Adams PetscInt gid = (PetscInt)PetscRealPart(cpcol_2_gid[cpid]); 6100cbbd2e1SMark F. Adams PetscInt slid_new=sgid_new-my0,hav=0; 61141b27cdeSMark F. Adams PetscCDPos pos; 6120cbbd2e1SMark F. Adams /* search for this gid to see if I have it */ 613e78576d6SMark F. Adams ierr = PetscCDGetHeadPos(aggs_2,slid_new,&pos);CHKERRQ(ierr); 614e78576d6SMark F. Adams while (pos) { 615e78576d6SMark F. Adams PetscInt gidj; 616ffc955d6SMark F. Adams ierr = PetscLLNGetID(pos, &gidj);CHKERRQ(ierr); 617e78576d6SMark F. Adams ierr = PetscCDGetNextPos(aggs_2,slid_new,&pos);CHKERRQ(ierr); 618e78576d6SMark F. Adams 6190cbbd2e1SMark F. Adams if (gidj == gid) { hav = 1; break; } 620c8b0795cSMark F. Adams } 621c8b0795cSMark F. Adams if (hav != 1) { 622ffc955d6SMark F. Adams /* insert 'flidj' into head of llist */ 62341b27cdeSMark F. Adams ierr = PetscCDAppendID(aggs_2, slid_new, gid);CHKERRQ(ierr); 624c8b0795cSMark F. Adams } 625c8b0795cSMark F. Adams } 626c8b0795cSMark F. Adams } 627c8b0795cSMark F. Adams 6280cbbd2e1SMark F. Adams ierr = VecRestoreArray(mpimat_1->lvec, &cpcol_1_state);CHKERRQ(ierr); 6290cbbd2e1SMark F. Adams ierr = VecRestoreArray(mpimat_2->lvec, &cpcol_2_state);CHKERRQ(ierr); 6300cbbd2e1SMark F. Adams ierr = VecRestoreArray(ghostparents2, &cpcol_2_parent);CHKERRQ(ierr); 6310cbbd2e1SMark F. Adams ierr = VecRestoreArray(ghostgids2, &cpcol_2_gid);CHKERRQ(ierr); 632c8b0795cSMark F. Adams ierr = PetscFree(lid_cprowID_1);CHKERRQ(ierr); 6330cbbd2e1SMark F. Adams ierr = VecDestroy(&ghostgids2);CHKERRQ(ierr); 6340cbbd2e1SMark F. Adams ierr = VecDestroy(&ghostparents2);CHKERRQ(ierr); 6350cbbd2e1SMark F. Adams ierr = VecDestroy(&ghost_par_orig2);CHKERRQ(ierr); 636c8b0795cSMark F. Adams } 637c8b0795cSMark F. Adams 6380cbbd2e1SMark F. Adams ierr = PetscFree(lid_parent_gid);CHKERRQ(ierr); 639c8b0795cSMark F. Adams ierr = PetscFree(lid_state);CHKERRQ(ierr); 640c8b0795cSMark F. Adams PetscFunctionReturn(0); 641c8b0795cSMark F. Adams } 6422e68589bSMark F. Adams 6432e68589bSMark F. Adams /* -------------------------------------------------------------------------- */ 6442e68589bSMark F. Adams /* 645a2f3521dSMark F. Adams PCSetData_AGG - called if data is not set with PCSetCoordinates. 646a2f3521dSMark F. Adams Looks in Mat for near null space. 647a2f3521dSMark F. Adams Does not work for Stokes 6482e68589bSMark F. Adams 6492e68589bSMark F. Adams Input Parameter: 6502e68589bSMark F. Adams . pc - 651a2f3521dSMark F. Adams . a_A - matrix to get (near) null space out of. 6522e68589bSMark F. Adams */ 6532e68589bSMark F. Adams #undef __FUNCT__ 6542e68589bSMark F. Adams #define __FUNCT__ "PCSetData_AGG" 655b8cd405aSMark F. Adams PetscErrorCode PCSetData_AGG(PC pc, Mat a_A) 6562e68589bSMark F. Adams { 6572e68589bSMark F. Adams PetscErrorCode ierr; 658b8cd405aSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 659b8cd405aSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 660b8cd405aSMark F. Adams MatNullSpace mnull; 661b8cd405aSMark F. Adams 6622e68589bSMark F. Adams PetscFunctionBegin; 663b8cd405aSMark F. Adams ierr = MatGetNearNullSpace(a_A, &mnull);CHKERRQ(ierr); 664b8cd405aSMark F. Adams if (!mnull) { 665a2f3521dSMark F. Adams PetscInt bs,NN,MM; 6669d1b15c3SMark F. Adams ierr = MatGetBlockSize(a_A, &bs);CHKERRQ(ierr); 66771959b99SBarry Smith ierr = MatGetLocalSize(a_A, &MM, &NN);CHKERRQ(ierr); 66871959b99SBarry Smith if (MM % bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"MM %D must be divisible by bs %D",MM,bs); 6690298fd71SBarry Smith ierr = PCSetCoordinates_AGG(pc, bs, MM/bs, NULL);CHKERRQ(ierr); 670806fa848SBarry Smith } else { 671b8cd405aSMark F. Adams PetscReal *nullvec; 672b8cd405aSMark F. Adams PetscBool has_const; 673b8cd405aSMark F. Adams PetscInt i,j,mlocal,nvec,bs; 674b8cd405aSMark F. Adams const Vec *vecs; const PetscScalar *v; 6750298fd71SBarry Smith ierr = MatGetLocalSize(a_A,&mlocal,NULL);CHKERRQ(ierr); 676b8cd405aSMark F. Adams ierr = MatNullSpaceGetVecs(mnull, &has_const, &nvec, &vecs);CHKERRQ(ierr); 6778caf3d72SBarry Smith ierr = PetscMalloc((nvec+!!has_const)*mlocal*sizeof(*nullvec),&nullvec);CHKERRQ(ierr); 678b8cd405aSMark F. Adams if (has_const) for (i=0; i<mlocal; i++) nullvec[i] = 1.0; 679b8cd405aSMark F. Adams for (i=0; i<nvec; i++) { 680b8cd405aSMark F. Adams ierr = VecGetArrayRead(vecs[i],&v);CHKERRQ(ierr); 681b8cd405aSMark F. Adams for (j=0; j<mlocal; j++) nullvec[(i+!!has_const)*mlocal + j] = PetscRealPart(v[j]); 682b8cd405aSMark F. Adams ierr = VecRestoreArrayRead(vecs[i],&v);CHKERRQ(ierr); 683b8cd405aSMark F. Adams } 684b8cd405aSMark F. Adams pc_gamg->data = nullvec; 685b8cd405aSMark F. Adams pc_gamg->data_cell_cols = (nvec+!!has_const); 6862fa5cd67SKarl Rupp 687a2f3521dSMark F. Adams ierr = MatGetBlockSize(a_A, &bs);CHKERRQ(ierr); /* this does not work for Stokes */ 6882fa5cd67SKarl Rupp 689b8cd405aSMark F. Adams pc_gamg->data_cell_rows = bs; 690b8cd405aSMark F. Adams } 6912e68589bSMark F. Adams PetscFunctionReturn(0); 6922e68589bSMark F. Adams } 6932e68589bSMark F. Adams 6942e68589bSMark F. Adams /* -------------------------------------------------------------------------- */ 6952e68589bSMark F. Adams /* 6962e68589bSMark F. Adams formProl0 6972e68589bSMark F. Adams 6982e68589bSMark F. Adams Input Parameter: 6990cbbd2e1SMark F. Adams . agg_llists - list of arrays with aggregates 7002e68589bSMark F. Adams . bs - block size 7010cbbd2e1SMark F. Adams . nSAvec - column bs of new P 7020cbbd2e1SMark F. Adams . my0crs - global index of start of locals 7032e68589bSMark F. Adams . data_stride - bs*(nloc nodes + ghost nodes) 7042e68589bSMark F. Adams . data_in[data_stride*nSAvec] - local data on fine grid 7052e68589bSMark F. Adams . flid_fgid[data_stride/bs] - make local to global IDs, includes ghosts in 'locals_llist' 7062e68589bSMark F. Adams Output Parameter: 7072e68589bSMark F. Adams . a_data_out - in with fine grid data (w/ghosts), out with coarse grid data 7082e68589bSMark F. Adams . a_Prol - prolongation operator 7092e68589bSMark F. Adams */ 7102e68589bSMark F. Adams #undef __FUNCT__ 7112e68589bSMark F. Adams #define __FUNCT__ "formProl0" 7120cbbd2e1SMark F. Adams static PetscErrorCode formProl0(const PetscCoarsenData *agg_llists, /* list from selected vertices of aggregate unselected vertices */ 7130cbbd2e1SMark F. Adams const PetscInt bs, /* (row) block size */ 7140cbbd2e1SMark F. Adams const PetscInt nSAvec, /* column bs */ 7150cbbd2e1SMark F. Adams const PetscInt my0crs, /* global index of start of locals */ 7160cbbd2e1SMark F. Adams const PetscInt data_stride, /* (nloc+nghost)*bs */ 7170cbbd2e1SMark F. Adams PetscReal data_in[], /* [data_stride][nSAvec] */ 7180cbbd2e1SMark F. Adams const PetscInt flid_fgid[], /* [data_stride/bs] */ 7192e68589bSMark F. Adams PetscReal **a_data_out, 7201147fc2aSKarl Rupp Mat a_Prol) /* prolongation operator (output)*/ 7212e68589bSMark F. Adams { 7222e68589bSMark F. Adams PetscErrorCode ierr; 7230cbbd2e1SMark F. Adams PetscInt Istart,my0,Iend,nloc,clid,flid,aggID,kk,jj,ii,mm,ndone,nSelected,minsz,nghosts,out_data_stride; 7243b4367a7SBarry Smith MPI_Comm comm; 725c5df96a5SBarry Smith PetscMPIInt rank, size; 7262e68589bSMark F. Adams PetscReal *out_data; 72741b27cdeSMark F. Adams PetscCDPos pos; 7280cbbd2e1SMark F. Adams GAMGHashTable fgid_flid; 7290cbbd2e1SMark F. Adams 730797e13b7SMark F. Adams /* #define OUT_AGGS */ 731519f805aSKarl Rupp #if defined(OUT_AGGS) 7320298fd71SBarry Smith static PetscInt llev = 0; char fname[32]; FILE *file = NULL; PetscInt pM; 7339057884aSMark F. Adams #endif 7342e68589bSMark F. Adams 7352e68589bSMark F. Adams PetscFunctionBegin; 7363b4367a7SBarry Smith ierr = PetscObjectGetComm((PetscObject)a_Prol,&comm);CHKERRQ(ierr); 7373b4367a7SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 7383b4367a7SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 7392e68589bSMark F. Adams ierr = MatGetOwnershipRange(a_Prol, &Istart, &Iend);CHKERRQ(ierr); 74071959b99SBarry Smith nloc = (Iend-Istart)/bs; my0 = Istart/bs; 74171959b99SBarry Smith if ((Iend-Istart) % bs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Iend %D - Istart %d must be divisible by bs %D",Iend,Istart,bs); 7420cbbd2e1SMark F. Adams Iend /= bs; 7430cbbd2e1SMark F. Adams nghosts = data_stride/bs - nloc; 7442e68589bSMark F. Adams 745f10ff945SMark F. Adams ierr = GAMGTableCreate(2*nghosts+1, &fgid_flid);CHKERRQ(ierr); 7460cbbd2e1SMark F. Adams for (kk=0; kk<nghosts; kk++) { 7470cbbd2e1SMark F. Adams ierr = GAMGTableAdd(&fgid_flid, flid_fgid[nloc+kk], nloc+kk);CHKERRQ(ierr); 7482e68589bSMark F. Adams } 7492e68589bSMark F. Adams 750519f805aSKarl Rupp #if defined(OUT_AGGS) 751c5df96a5SBarry Smith sprintf(fname,"aggs_%d_%d.m",llev++,rank); 7522fa5cd67SKarl Rupp if (llev==1) file = fopen(fname,"w"); 7530cbbd2e1SMark F. Adams MatGetSize(a_Prol, &pM, &jj); 7540cbbd2e1SMark F. Adams #endif 7550cbbd2e1SMark F. Adams 7560cbbd2e1SMark F. Adams /* count selected -- same as number of cols of P */ 7570cbbd2e1SMark F. Adams for (nSelected=mm=0; mm<nloc; mm++) { 758e78576d6SMark F. Adams PetscBool ise; 759e78576d6SMark F. Adams ierr = PetscCDEmptyAt(agg_llists, mm, &ise);CHKERRQ(ierr); 760e78576d6SMark F. Adams if (!ise) nSelected++; 7610cbbd2e1SMark F. Adams } 7620cbbd2e1SMark F. Adams ierr = MatGetOwnershipRangeColumn(a_Prol, &ii, &jj);CHKERRQ(ierr); 76371959b99SBarry Smith if ((ii/nSAvec) != my0crs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"ii %D /nSAvec %D != my0crs %D",ii,nSAvec,my0crs); 76471959b99SBarry Smith if (nSelected != (jj-ii)/nSAvec) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_PLIB,"nSelected %D != (jj %D - ii %D)/nSAvec %D",nSelected,jj,ii,nSAvec); 7650cbbd2e1SMark F. Adams 7662e68589bSMark F. Adams /* aloc space for coarse point data (output) */ 7670cbbd2e1SMark F. Adams out_data_stride = nSelected*nSAvec; 7682fa5cd67SKarl Rupp 7690cbbd2e1SMark F. Adams ierr = PetscMalloc(out_data_stride*nSAvec*sizeof(PetscReal), &out_data);CHKERRQ(ierr); 77033812677SSatish Balay for (ii=0;ii<out_data_stride*nSAvec;ii++) out_data[ii]=PETSC_MAX_REAL; 7710cbbd2e1SMark F. Adams *a_data_out = out_data; /* output - stride nSelected*nSAvec */ 7722e68589bSMark F. Adams 7732e68589bSMark F. Adams /* find points and set prolongation */ 774c8b0795cSMark F. Adams minsz = 100; 7752e68589bSMark F. Adams ndone = 0; 7760cbbd2e1SMark F. Adams for (mm = clid = 0; mm < nloc; mm++) { 777e78576d6SMark F. Adams ierr = PetscCDSizeAt(agg_llists, mm, &jj);CHKERRQ(ierr); 778e78576d6SMark F. Adams if (jj > 0) { 7790cbbd2e1SMark F. Adams const PetscInt lid = mm, cgid = my0crs + clid; 7800cbbd2e1SMark F. Adams PetscInt cids[100]; /* max bs */ 7810cbbd2e1SMark F. Adams PetscBLASInt asz =jj,M=asz*bs,N=nSAvec,INFO; 7822e68589bSMark F. Adams PetscBLASInt Mdata=M+((N-M>0) ? N-M : 0),LDA=Mdata,LWORK=N*bs; 7832e68589bSMark F. Adams PetscScalar *qqc,*qqr,*TAU,*WORK; 7842e68589bSMark F. Adams PetscInt *fids; 78565d7b583SSatish Balay PetscReal *data; 7860cbbd2e1SMark F. Adams /* count agg */ 7870cbbd2e1SMark F. Adams if (asz<minsz) minsz = asz; 7880cbbd2e1SMark F. Adams 7890cbbd2e1SMark F. Adams /* get block */ 7902e68589bSMark F. Adams ierr = PetscMalloc((Mdata*N)*sizeof(PetscScalar), &qqc);CHKERRQ(ierr); 7912e68589bSMark F. Adams ierr = PetscMalloc((M*N)*sizeof(PetscScalar), &qqr);CHKERRQ(ierr); 7922e68589bSMark F. Adams ierr = PetscMalloc(N*sizeof(PetscScalar), &TAU);CHKERRQ(ierr); 7932e68589bSMark F. Adams ierr = PetscMalloc(LWORK*sizeof(PetscScalar), &WORK);CHKERRQ(ierr); 7942e68589bSMark F. Adams ierr = PetscMalloc(M*sizeof(PetscInt), &fids);CHKERRQ(ierr); 7952e68589bSMark F. Adams 7962e68589bSMark F. Adams aggID = 0; 797e78576d6SMark F. Adams ierr = PetscCDGetHeadPos(agg_llists,lid,&pos);CHKERRQ(ierr); 798e78576d6SMark F. Adams while (pos) { 799e78576d6SMark F. Adams PetscInt gid1; 800ffc955d6SMark F. Adams ierr = PetscLLNGetID(pos, &gid1);CHKERRQ(ierr); 801e78576d6SMark F. Adams ierr = PetscCDGetNextPos(agg_llists,lid,&pos);CHKERRQ(ierr); 802e78576d6SMark F. Adams 8030cbbd2e1SMark F. Adams if (gid1 >= my0 && gid1 < Iend) flid = gid1 - my0; 8040cbbd2e1SMark F. Adams else { 8050cbbd2e1SMark F. Adams ierr = GAMGTableFind(&fgid_flid, gid1, &flid);CHKERRQ(ierr); 80671959b99SBarry Smith if (flid < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cannot find gid1 in table"); 8070cbbd2e1SMark F. Adams } 8082e68589bSMark F. Adams /* copy in B_i matrix - column oriented */ 80965d7b583SSatish Balay data = &data_in[flid*bs]; 8102e68589bSMark F. Adams for (kk = ii = 0; ii < bs; ii++) { 8112e68589bSMark F. Adams for (jj = 0; jj < N; jj++) { 8120cbbd2e1SMark F. Adams PetscReal d = data[jj*data_stride + ii]; 8130cbbd2e1SMark F. Adams qqc[jj*Mdata + aggID*bs + ii] = d; 8142e68589bSMark F. Adams } 8152e68589bSMark F. Adams } 816519f805aSKarl Rupp #if defined(OUT_AGGS) 817b2a4f308SMark F. Adams if (llev==1) { 8189057884aSMark F. Adams char str[] = "plot(%e,%e,'r*'), hold on,\n", col[] = "rgbkmc", sim[] = "*os+h>d<vx^"; 8190cbbd2e1SMark F. Adams PetscInt MM,pi,pj; 820c5df96a5SBarry Smith str[12] = col[(clid+17*rank)%6]; str[13] = sim[(clid+17*rank)%11]; 821f7620de1SMatthew G Knepley MM = (PetscInt)(PetscSqrtReal((PetscReal)pM)); 8220cbbd2e1SMark F. Adams pj = gid1/MM; pi = gid1%MM; 823b2a4f308SMark F. Adams fprintf(file,str,(double)pi,(double)pj); 824b2a4f308SMark F. Adams /* fprintf(file,str,data[2*data_stride+1],-data[2*data_stride]); */ 8259057884aSMark F. Adams } 8269057884aSMark F. Adams #endif 8272e68589bSMark F. Adams /* set fine IDs */ 8282e68589bSMark F. Adams for (kk=0; kk<bs; kk++) fids[aggID*bs + kk] = flid_fgid[flid]*bs + kk; 8292e68589bSMark F. Adams 8302e68589bSMark F. Adams aggID++; 8310cbbd2e1SMark F. Adams } 8322e68589bSMark F. Adams 8332e68589bSMark F. Adams /* pad with zeros */ 8342e68589bSMark F. Adams for (ii = asz*bs; ii < Mdata; ii++) { 8352e68589bSMark F. Adams for (jj = 0; jj < N; jj++, kk++) { 8362e68589bSMark F. Adams qqc[jj*Mdata + ii] = .0; 8372e68589bSMark F. Adams } 8382e68589bSMark F. Adams } 8392e68589bSMark F. Adams 8402e68589bSMark F. Adams ndone += aggID; 8412e68589bSMark F. Adams /* QR */ 84284df3f90SSatish Balay ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 8438b83055fSJed Brown PetscStackCallBLAS("LAPACKgeqrf",LAPACKgeqrf_(&Mdata, &N, qqc, &LDA, TAU, WORK, &LWORK, &INFO)); 84484df3f90SSatish Balay ierr = PetscFPTrapPop();CHKERRQ(ierr); 845d23427c4SJed Brown if (INFO != 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"xGEQRF error"); 8462e68589bSMark F. Adams /* get R - column oriented - output B_{i+1} */ 8472e68589bSMark F. Adams { 8482e68589bSMark F. Adams PetscReal *data = &out_data[clid*nSAvec]; 8492e68589bSMark F. Adams for (jj = 0; jj < nSAvec; jj++) { 8502e68589bSMark F. Adams for (ii = 0; ii < nSAvec; ii++) { 85133812677SSatish Balay if (data[jj*out_data_stride + ii] != PETSC_MAX_REAL) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"data[jj*out_data_stride + ii] != %e",PETSC_MAX_REAL); 8520cbbd2e1SMark F. Adams if (ii <= jj) data[jj*out_data_stride + ii] = PetscRealPart(qqc[jj*Mdata + ii]); 8530cbbd2e1SMark F. Adams else data[jj*out_data_stride + ii] = 0.; 8542e68589bSMark F. Adams } 8552e68589bSMark F. Adams } 8562e68589bSMark F. Adams } 8572e68589bSMark F. Adams 8582e68589bSMark F. Adams /* get Q - row oriented */ 8598b83055fSJed Brown PetscStackCallBLAS("LAPACKungqr",LAPACKungqr_(&Mdata, &N, &N, qqc, &LDA, TAU, WORK, &LWORK, &INFO)); 860c666adbfSMark F. Adams if (INFO != 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"xORGQR error arg %d",-INFO); 8612e68589bSMark F. Adams 8622e68589bSMark F. Adams for (ii = 0; ii < M; ii++) { 8632e68589bSMark F. Adams for (jj = 0; jj < N; jj++) { 8642e68589bSMark F. Adams qqr[N*ii + jj] = qqc[jj*Mdata + ii]; 8652e68589bSMark F. Adams } 8662e68589bSMark F. Adams } 8672e68589bSMark F. Adams 8682e68589bSMark F. Adams /* add diagonal block of P0 */ 869c8b0795cSMark F. Adams for (kk=0; kk<N; kk++) { 870c8b0795cSMark F. Adams cids[kk] = N*cgid + kk; /* global col IDs in P0 */ 871c8b0795cSMark F. Adams } 8722e68589bSMark F. Adams ierr = MatSetValues(a_Prol,M,fids,N,cids,qqr,INSERT_VALUES);CHKERRQ(ierr); 8732e68589bSMark F. Adams 8742e68589bSMark F. Adams ierr = PetscFree(qqc);CHKERRQ(ierr); 8752e68589bSMark F. Adams ierr = PetscFree(qqr);CHKERRQ(ierr); 8762e68589bSMark F. Adams ierr = PetscFree(TAU);CHKERRQ(ierr); 8772e68589bSMark F. Adams ierr = PetscFree(WORK);CHKERRQ(ierr); 8782e68589bSMark F. Adams ierr = PetscFree(fids);CHKERRQ(ierr); 879b43b03e9SMark F. Adams clid++; 8800cbbd2e1SMark F. Adams } /* coarse agg */ 8810cbbd2e1SMark F. Adams } /* for all fine nodes */ 8820cbbd2e1SMark F. Adams ierr = MatAssemblyBegin(a_Prol,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8830cbbd2e1SMark F. Adams ierr = MatAssemblyEnd(a_Prol,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8842e68589bSMark F. Adams 8853b4367a7SBarry Smith /* ierr = MPI_Allreduce(&ndone, &ii, 1, MPIU_INT, MPIU_SUM, comm); */ 8862e68589bSMark F. Adams /* MatGetSize(a_Prol, &kk, &jj); */ 8873b4367a7SBarry Smith /* ierr = MPI_Allreduce(&minsz, &jj, 1, MPIU_INT, MPIU_MIN, comm); */ 8883b4367a7SBarry Smith /* PetscPrintf(comm," **** [%d]%s %d total done, %d nodes (%d local done), min agg. size = %d\n",rank,__FUNCT__,ii,kk/bs,ndone,jj); */ 8892e68589bSMark F. Adams 890519f805aSKarl Rupp #if defined(OUT_AGGS) 891b2a4f308SMark F. Adams if (llev==1) fclose(file); 8929057884aSMark F. Adams #endif 8930cbbd2e1SMark F. Adams ierr = GAMGTableDestroy(&fgid_flid);CHKERRQ(ierr); 8942e68589bSMark F. Adams PetscFunctionReturn(0); 8952e68589bSMark F. Adams } 8962e68589bSMark F. Adams 8972e68589bSMark F. Adams /* -------------------------------------------------------------------------- */ 8982e68589bSMark F. Adams /* 899c8b0795cSMark F. Adams PCGAMGgraph_AGG 9002e68589bSMark F. Adams 9012e68589bSMark F. Adams Input Parameter: 9022e68589bSMark F. Adams . pc - this 9032e68589bSMark F. Adams . Amat - matrix on this fine level 9042e68589bSMark F. Adams Output Parameter: 905c8b0795cSMark F. Adams . a_Gmat - 9062e68589bSMark F. Adams */ 9072e68589bSMark F. Adams #undef __FUNCT__ 908c8b0795cSMark F. Adams #define __FUNCT__ "PCGAMGgraph_AGG" 9092fa5cd67SKarl Rupp PetscErrorCode PCGAMGgraph_AGG(PC pc,const Mat Amat,Mat *a_Gmat) 910c8b0795cSMark F. Adams { 911c8b0795cSMark F. Adams PetscErrorCode ierr; 912c8b0795cSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 913c8b0795cSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 914c8b0795cSMark F. Adams const PetscInt verbose = pc_gamg->verbose; 915c8b0795cSMark F. Adams const PetscReal vfilter = pc_gamg->threshold; 916c8b0795cSMark F. Adams PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx; 917c5df96a5SBarry Smith PetscMPIInt rank,size; 918e0940f08SMark F. Adams Mat Gmat; 9193b4367a7SBarry Smith MPI_Comm comm; 92067744fedSMark F. Adams PetscBool /* set,flg , */ symm; 921c8b0795cSMark F. Adams 922c8b0795cSMark F. Adams PetscFunctionBegin; 9233b4367a7SBarry Smith ierr = PetscObjectGetComm((PetscObject)Amat,&comm);CHKERRQ(ierr); 9240cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG 9250cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(PC_GAMGGgraph_AGG,0,0,0,0);CHKERRQ(ierr); 9260cbbd2e1SMark F. Adams #endif 9273b4367a7SBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 9283b4367a7SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 929c8b0795cSMark F. Adams 93067744fedSMark F. Adams /* ierr = MatIsSymmetricKnown(Amat, &set, &flg);CHKERRQ(ierr); || !(set && flg) -- this causes lot of symm calls */ 931c666adbfSMark F. Adams symm = (PetscBool)(pc_gamg_agg->sym_graph); /* && !pc_gamg_agg->square_graph; */ 9320cbbd2e1SMark F. Adams 9332d7fac45SMark F. Adams ierr = PCGAMGCreateGraph(Amat, &Gmat);CHKERRQ(ierr); 9342d7fac45SMark F. Adams ierr = PCGAMGFilterGraph(&Gmat, vfilter, symm, verbose);CHKERRQ(ierr); 935c8b0795cSMark F. Adams 936e0940f08SMark F. Adams *a_Gmat = Gmat; 937c8b0795cSMark F. Adams 9380cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG 9390cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(PC_GAMGGgraph_AGG,0,0,0,0);CHKERRQ(ierr); 9400cbbd2e1SMark F. Adams #endif 941c8b0795cSMark F. Adams PetscFunctionReturn(0); 942c8b0795cSMark F. Adams } 943c8b0795cSMark F. Adams 944c8b0795cSMark F. Adams /* -------------------------------------------------------------------------- */ 945c8b0795cSMark F. Adams /* 946b43b03e9SMark F. Adams PCGAMGCoarsen_AGG 947c8b0795cSMark F. Adams 948c8b0795cSMark F. Adams Input Parameter: 949e0940f08SMark F. Adams . a_pc - this 950e0940f08SMark F. Adams Input/Output Parameter: 9510cbbd2e1SMark F. Adams . a_Gmat1 - graph on this fine level - coarsening can change this (squares it) 952c8b0795cSMark F. Adams Output Parameter: 9530cbbd2e1SMark F. Adams . agg_lists - list of aggregates 954c8b0795cSMark F. Adams */ 955c8b0795cSMark F. Adams #undef __FUNCT__ 956b43b03e9SMark F. Adams #define __FUNCT__ "PCGAMGCoarsen_AGG" 9572fa5cd67SKarl Rupp PetscErrorCode PCGAMGCoarsen_AGG(PC a_pc,Mat *a_Gmat1,PetscCoarsenData **agg_lists) 958c8b0795cSMark F. Adams { 959c8b0795cSMark F. Adams PetscErrorCode ierr; 960e0940f08SMark F. Adams PC_MG *mg = (PC_MG*)a_pc->data; 961c8b0795cSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 962c8b0795cSMark F. Adams PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx; 9630cbbd2e1SMark F. Adams Mat mat,Gmat2, Gmat1 = *a_Gmat1; /* squared graph */ 9649f3f12c8SMark F. Adams const PetscInt verbose = pc_gamg->verbose; 9650cbbd2e1SMark F. Adams IS perm; 966c8b0795cSMark F. Adams PetscInt Ii,nloc,bs,n,m; 967c8b0795cSMark F. Adams PetscInt *permute; 968c8b0795cSMark F. Adams PetscBool *bIndexSet; 969b43b03e9SMark F. Adams MatCoarsen crs; 9703b4367a7SBarry Smith MPI_Comm comm; 971c5df96a5SBarry Smith PetscMPIInt rank,size; 972c8b0795cSMark F. Adams 973c8b0795cSMark F. Adams PetscFunctionBegin; 9740cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG 9750cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(PC_GAMGCoarsen_AGG,0,0,0,0);CHKERRQ(ierr); 9760cbbd2e1SMark F. Adams #endif 9773b4367a7SBarry Smith ierr = PetscObjectGetComm((PetscObject)Gmat1,&comm);CHKERRQ(ierr); 9783b4367a7SBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 9793b4367a7SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 980e0940f08SMark F. Adams ierr = MatGetLocalSize(Gmat1, &n, &m);CHKERRQ(ierr); 98171959b99SBarry Smith ierr = MatGetBlockSize(Gmat1, &bs);CHKERRQ(ierr); 98271959b99SBarry Smith if (bs != 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"bs %D must be 1",bs); 983c8b0795cSMark F. Adams nloc = n/bs; 984c8b0795cSMark F. Adams 985e0940f08SMark F. Adams if (pc_gamg_agg->square_graph) { 9863b4367a7SBarry Smith if (verbose > 1) PetscPrintf(comm,"[%d]%s square graph\n",rank,__FUNCT__); 987878e152fSMark F. Adams /* ierr = MatMatTransposeMult(Gmat1, Gmat1, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Gmat2); */ 988806fa848SBarry Smith ierr = MatTransposeMatMult(Gmat1, Gmat1, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Gmat2);CHKERRQ(ierr); 9899f3f12c8SMark F. Adams if (verbose > 2) { 9903b4367a7SBarry Smith ierr = PetscPrintf(comm,"[%d]%s square graph done\n",rank,__FUNCT__);CHKERRQ(ierr); 991f10ff945SMark F. Adams /* check for symetry */ 992f10ff945SMark F. Adams if (verbose > 4) { 993f10ff945SMark F. Adams 994f10ff945SMark F. Adams } 9959f3f12c8SMark F. Adams } 996806fa848SBarry Smith } else Gmat2 = Gmat1; 997c8b0795cSMark F. Adams 998c8b0795cSMark F. Adams /* get MIS aggs */ 999c8b0795cSMark F. Adams /* randomize */ 1000c8b0795cSMark F. Adams ierr = PetscMalloc(nloc*sizeof(PetscInt), &permute);CHKERRQ(ierr); 1001c8b0795cSMark F. Adams ierr = PetscMalloc(nloc*sizeof(PetscBool), &bIndexSet);CHKERRQ(ierr); 1002c8b0795cSMark F. Adams for (Ii = 0; Ii < nloc; Ii++) { 1003c8b0795cSMark F. Adams bIndexSet[Ii] = PETSC_FALSE; 1004c8b0795cSMark F. Adams permute[Ii] = Ii; 1005c8b0795cSMark F. Adams } 1006c8b0795cSMark F. Adams srand(1); /* make deterministic */ 1007c8b0795cSMark F. Adams for (Ii = 0; Ii < nloc; Ii++) { 1008c8b0795cSMark F. Adams PetscInt iSwapIndex = rand()%nloc; 1009c8b0795cSMark F. Adams if (!bIndexSet[iSwapIndex] && iSwapIndex != Ii) { 1010c8b0795cSMark F. Adams PetscInt iTemp = permute[iSwapIndex]; 1011c8b0795cSMark F. Adams permute[iSwapIndex] = permute[Ii]; 1012c8b0795cSMark F. Adams permute[Ii] = iTemp; 1013c8b0795cSMark F. Adams bIndexSet[iSwapIndex] = PETSC_TRUE; 1014c8b0795cSMark F. Adams } 1015c8b0795cSMark F. Adams } 1016c8b0795cSMark F. Adams ierr = PetscFree(bIndexSet);CHKERRQ(ierr); 1017c8b0795cSMark F. Adams 10183b4367a7SBarry Smith if (verbose > 1) PetscPrintf(comm,"[%d]%s coarsen graph\n",rank,__FUNCT__); 10199f3f12c8SMark F. Adams 1020806fa848SBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF, nloc, permute, PETSC_USE_POINTER, &perm);CHKERRQ(ierr); 10210cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 10220cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(petsc_gamg_setup_events[SET4],0,0,0,0);CHKERRQ(ierr); 1023b43b03e9SMark F. Adams #endif 10243b4367a7SBarry Smith ierr = MatCoarsenCreate(comm, &crs);CHKERRQ(ierr); 10259057884aSMark F. Adams /* ierr = MatCoarsenSetType(crs, MATCOARSENMIS);CHKERRQ(ierr); */ 10269057884aSMark F. Adams ierr = MatCoarsenSetFromOptions(crs);CHKERRQ(ierr); 1027b43b03e9SMark F. Adams ierr = MatCoarsenSetGreedyOrdering(crs, perm);CHKERRQ(ierr); 1028b43b03e9SMark F. Adams ierr = MatCoarsenSetAdjacency(crs, Gmat2);CHKERRQ(ierr); 1029b43b03e9SMark F. Adams ierr = MatCoarsenSetVerbose(crs, pc_gamg->verbose);CHKERRQ(ierr); 1030b43b03e9SMark F. Adams ierr = MatCoarsenSetStrictAggs(crs, PETSC_TRUE);CHKERRQ(ierr); 1031b43b03e9SMark F. Adams ierr = MatCoarsenApply(crs);CHKERRQ(ierr); 10320cbbd2e1SMark F. Adams ierr = MatCoarsenGetData(crs, agg_lists);CHKERRQ(ierr); /* output */ 1033b43b03e9SMark F. Adams ierr = MatCoarsenDestroy(&crs);CHKERRQ(ierr); 1034b43b03e9SMark F. Adams 1035c8b0795cSMark F. Adams ierr = ISDestroy(&perm);CHKERRQ(ierr); 1036c8b0795cSMark F. Adams ierr = PetscFree(permute);CHKERRQ(ierr); 10370cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 10380cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(petsc_gamg_setup_events[SET4],0,0,0,0);CHKERRQ(ierr); 1039b43b03e9SMark F. Adams #endif 10403b4367a7SBarry Smith if (verbose > 2) PetscPrintf(comm,"[%d]%s coarsen graph done\n",rank,__FUNCT__); 10419f3f12c8SMark F. Adams 1042c8b0795cSMark F. Adams /* smooth aggs */ 1043e0940f08SMark F. Adams if (Gmat2 != Gmat1) { 10440cbbd2e1SMark F. Adams const PetscCoarsenData *llist = *agg_lists; 10450cbbd2e1SMark F. Adams ierr = smoothAggs(Gmat2, Gmat1, *agg_lists);CHKERRQ(ierr); 1046c8b0795cSMark F. Adams ierr = MatDestroy(&Gmat1);CHKERRQ(ierr); 1047e0940f08SMark F. Adams *a_Gmat1 = Gmat2; /* output */ 104841b27cdeSMark F. Adams ierr = PetscCDGetMat(llist, &mat);CHKERRQ(ierr); 10493b4367a7SBarry Smith if (mat) SETERRQ(comm,PETSC_ERR_ARG_WRONG, "Auxilary matrix with squared graph????"); 1050806fa848SBarry Smith } else { 10510cbbd2e1SMark F. Adams const PetscCoarsenData *llist = *agg_lists; 1052f10ff945SMark F. Adams /* see if we have a matrix that takes precedence (returned from MatCoarsenAppply) */ 105341b27cdeSMark F. Adams ierr = PetscCDGetMat(llist, &mat);CHKERRQ(ierr); 10540cbbd2e1SMark F. Adams if (mat) { 10550cbbd2e1SMark F. Adams ierr = MatDestroy(&Gmat1);CHKERRQ(ierr); 10560cbbd2e1SMark F. Adams *a_Gmat1 = mat; /* output */ 10570cbbd2e1SMark F. Adams } 10580cbbd2e1SMark F. Adams } 10590cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG 10600cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(PC_GAMGCoarsen_AGG,0,0,0,0);CHKERRQ(ierr); 10610cbbd2e1SMark F. Adams #endif 10623b4367a7SBarry Smith if (verbose > 2) PetscPrintf(comm,"[%d]%s PCGAMGCoarsen_AGG done\n",rank,__FUNCT__); 1063c8b0795cSMark F. Adams PetscFunctionReturn(0); 1064c8b0795cSMark F. Adams } 1065c8b0795cSMark F. Adams 1066c8b0795cSMark F. Adams /* -------------------------------------------------------------------------- */ 1067c8b0795cSMark F. Adams /* 10680cbbd2e1SMark F. Adams PCGAMGProlongator_AGG 1069c8b0795cSMark F. Adams 1070c8b0795cSMark F. Adams Input Parameter: 1071c8b0795cSMark F. Adams . pc - this 1072c8b0795cSMark F. Adams . Amat - matrix on this fine level 1073c8b0795cSMark F. Adams . Graph - used to get ghost data for nodes in 10740cbbd2e1SMark F. Adams . agg_lists - list of aggregates 1075c8b0795cSMark F. Adams Output Parameter: 1076c8b0795cSMark F. Adams . a_P_out - prolongation operator to the next level 1077c8b0795cSMark F. Adams */ 1078c8b0795cSMark F. Adams #undef __FUNCT__ 10790cbbd2e1SMark F. Adams #define __FUNCT__ "PCGAMGProlongator_AGG" 10802fa5cd67SKarl Rupp PetscErrorCode PCGAMGProlongator_AGG(PC pc,const Mat Amat,const Mat Gmat,PetscCoarsenData *agg_lists,Mat *a_P_out) 10812e68589bSMark F. Adams { 10822e68589bSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 10832e68589bSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 10842e68589bSMark F. Adams const PetscInt verbose = pc_gamg->verbose; 1085c8b0795cSMark F. Adams const PetscInt data_cols = pc_gamg->data_cell_cols; 10862e68589bSMark F. Adams PetscErrorCode ierr; 1087c8b0795cSMark F. Adams PetscInt Istart,Iend,nloc,ii,jj,kk,my0,nLocalSelected,bs; 1088c8b0795cSMark F. Adams Mat Prol; 1089c5df96a5SBarry Smith PetscMPIInt rank, size; 10903b4367a7SBarry Smith MPI_Comm comm; 10910cbbd2e1SMark F. Adams const PetscInt col_bs = data_cols; 1092c8b0795cSMark F. Adams PetscReal *data_w_ghost; 1093c8b0795cSMark F. Adams PetscInt myCrs0, nbnodes=0, *flid_fgid; 10942e68589bSMark F. Adams 10952e68589bSMark F. Adams PetscFunctionBegin; 10963b4367a7SBarry Smith ierr = PetscObjectGetComm((PetscObject)Amat,&comm);CHKERRQ(ierr); 10970cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG 10980cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(PC_GAMGProlongator_AGG,0,0,0,0);CHKERRQ(ierr); 10990cbbd2e1SMark F. Adams #endif 11003b4367a7SBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 11013b4367a7SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 11022e68589bSMark F. Adams ierr = MatGetOwnershipRange(Amat, &Istart, &Iend);CHKERRQ(ierr); 1103c8b0795cSMark F. Adams ierr = MatGetBlockSize(Amat, &bs);CHKERRQ(ierr); 110471959b99SBarry Smith nloc = (Iend-Istart)/bs; my0 = Istart/bs; 110571959b99SBarry Smith if ((Iend-Istart) % bs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"(Iend %D - Istart %D) not divisible by bs %D",Iend,Istart,bs); 11062e68589bSMark F. Adams 11072e68589bSMark F. Adams /* get 'nLocalSelected' */ 11080cbbd2e1SMark F. Adams for (ii=0, nLocalSelected = 0; ii < nloc; ii++) { 1109e78576d6SMark F. Adams PetscBool ise; 11100cbbd2e1SMark F. Adams /* filter out singletons 0 or 1? */ 1111e78576d6SMark F. Adams ierr = PetscCDEmptyAt(agg_lists, ii, &ise);CHKERRQ(ierr); 1112e78576d6SMark F. Adams if (!ise) nLocalSelected++; 11132e68589bSMark F. Adams } 11142e68589bSMark F. Adams 11152e68589bSMark F. Adams /* create prolongator, create P matrix */ 11163b4367a7SBarry Smith ierr = MatCreate(comm, &Prol);CHKERRQ(ierr); 1117806fa848SBarry Smith ierr = MatSetSizes(Prol,nloc*bs,nLocalSelected*col_bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 1118a2f3521dSMark F. Adams ierr = MatSetBlockSizes(Prol, bs, col_bs);CHKERRQ(ierr); 1119a2f3521dSMark F. Adams ierr = MatSetType(Prol, MATAIJ);CHKERRQ(ierr); 11200298fd71SBarry Smith ierr = MatSeqAIJSetPreallocation(Prol, data_cols, NULL);CHKERRQ(ierr); 11210298fd71SBarry Smith ierr = MatMPIAIJSetPreallocation(Prol,data_cols, NULL,data_cols, NULL);CHKERRQ(ierr); 1122a2f3521dSMark F. Adams /* nloc*bs, nLocalSelected*col_bs, */ 1123a2f3521dSMark F. Adams /* PETSC_DETERMINE, PETSC_DETERMINE, */ 11240298fd71SBarry Smith /* data_cols, NULL, data_cols, NULL, */ 1125a2f3521dSMark F. Adams /* &Prol); */ 11262e68589bSMark F. Adams 11272e68589bSMark F. Adams /* can get all points "removed" */ 1128c8b0795cSMark F. Adams ierr = MatGetSize(Prol, &kk, &ii);CHKERRQ(ierr); 1129c8b0795cSMark F. Adams if (ii==0) { 11303b4367a7SBarry Smith if (verbose > 0) PetscPrintf(comm,"[%d]%s no selected points on coarse grid\n",rank,__FUNCT__); 11312e68589bSMark F. Adams ierr = MatDestroy(&Prol);CHKERRQ(ierr); 11320298fd71SBarry Smith *a_P_out = NULL; /* out */ 11332e68589bSMark F. Adams PetscFunctionReturn(0); 11342e68589bSMark F. Adams } 11353b4367a7SBarry Smith if (verbose > 0) PetscPrintf(comm,"\t\t[%d]%s New grid %d nodes\n",rank,__FUNCT__,ii/col_bs); 1136c8b0795cSMark F. Adams ierr = MatGetOwnershipRangeColumn(Prol, &myCrs0, &kk);CHKERRQ(ierr); 11370cbbd2e1SMark F. Adams 113871959b99SBarry Smith if ((kk-myCrs0) % col_bs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"(kk %D -myCrs0 %D) not divisible by col_bs %D",kk,myCrs0,col_bs); 1139c8b0795cSMark F. Adams myCrs0 = myCrs0/col_bs; 114071959b99SBarry Smith if ((kk/col_bs-myCrs0) != nLocalSelected) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_PLIB,"(kk %D/col_bs %D - myCrs0 %D) != nLocalSelected %D)",kk,col_bs,myCrs0,nLocalSelected); 11412e68589bSMark F. Adams 11422e68589bSMark F. Adams /* create global vector of data in 'data_w_ghost' */ 11430cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 11440cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(petsc_gamg_setup_events[SET7],0,0,0,0);CHKERRQ(ierr); 11452e68589bSMark F. Adams #endif 1146c5df96a5SBarry Smith if (size > 1) { /* */ 11472e68589bSMark F. Adams PetscReal *tmp_gdata,*tmp_ldata,*tp2; 11482e68589bSMark F. Adams ierr = PetscMalloc(nloc*sizeof(PetscReal), &tmp_ldata);CHKERRQ(ierr); 11492e68589bSMark F. Adams for (jj = 0; jj < data_cols; jj++) { 1150c8b0795cSMark F. Adams for (kk = 0; kk < bs; kk++) { 1151a2f3521dSMark F. Adams PetscInt ii,stride; 1152c8b0795cSMark F. Adams const PetscReal *tp = pc_gamg->data + jj*bs*nloc + kk; 11532fa5cd67SKarl Rupp for (ii = 0; ii < nloc; ii++, tp += bs) tmp_ldata[ii] = *tp; 11542fa5cd67SKarl Rupp 1155806fa848SBarry Smith ierr = PCGAMGGetDataWithGhosts(Gmat, 1, tmp_ldata, &stride, &tmp_gdata);CHKERRQ(ierr); 1156a2f3521dSMark F. Adams 11572e68589bSMark F. Adams if (jj==0 && kk==0) { /* now I know how many todal nodes - allocate */ 1158a2f3521dSMark F. Adams ierr = PetscMalloc(stride*bs*data_cols*sizeof(PetscReal), &data_w_ghost);CHKERRQ(ierr); 1159a2f3521dSMark F. Adams nbnodes = bs*stride; 11602e68589bSMark F. Adams } 1161a2f3521dSMark F. Adams tp2 = data_w_ghost + jj*bs*stride + kk; 11622fa5cd67SKarl Rupp for (ii = 0; ii < stride; ii++, tp2 += bs) *tp2 = tmp_gdata[ii]; 11632e68589bSMark F. Adams ierr = PetscFree(tmp_gdata);CHKERRQ(ierr); 11642e68589bSMark F. Adams } 11652e68589bSMark F. Adams } 11662e68589bSMark F. Adams ierr = PetscFree(tmp_ldata);CHKERRQ(ierr); 1167806fa848SBarry Smith } else { 1168c8b0795cSMark F. Adams nbnodes = bs*nloc; 1169c8b0795cSMark F. Adams data_w_ghost = (PetscReal*)pc_gamg->data; 11702e68589bSMark F. Adams } 11712e68589bSMark F. Adams 11722e68589bSMark F. Adams /* get P0 */ 1173c5df96a5SBarry Smith if (size > 1) { 11742e68589bSMark F. Adams PetscReal *fid_glid_loc,*fiddata; 1175a2f3521dSMark F. Adams PetscInt stride; 11762e68589bSMark F. Adams 11772e68589bSMark F. Adams ierr = PetscMalloc(nloc*sizeof(PetscReal), &fid_glid_loc);CHKERRQ(ierr); 11782e68589bSMark F. Adams for (kk=0; kk<nloc; kk++) fid_glid_loc[kk] = (PetscReal)(my0+kk); 1179806fa848SBarry Smith ierr = PCGAMGGetDataWithGhosts(Gmat, 1, fid_glid_loc, &stride, &fiddata);CHKERRQ(ierr); 1180a2f3521dSMark F. Adams ierr = PetscMalloc(stride*sizeof(PetscInt), &flid_fgid);CHKERRQ(ierr); 1181a2f3521dSMark F. Adams for (kk=0; kk<stride; kk++) flid_fgid[kk] = (PetscInt)fiddata[kk]; 11822e68589bSMark F. Adams ierr = PetscFree(fiddata);CHKERRQ(ierr); 1183a2f3521dSMark F. Adams 118471959b99SBarry Smith if (stride != nbnodes/bs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"stride %D != nbnodes %D/bs %D",stride,nbnodes,bs); 11852e68589bSMark F. Adams ierr = PetscFree(fid_glid_loc);CHKERRQ(ierr); 1186806fa848SBarry Smith } else { 11872e68589bSMark F. Adams ierr = PetscMalloc(nloc*sizeof(PetscInt), &flid_fgid);CHKERRQ(ierr); 11882e68589bSMark F. Adams for (kk=0; kk<nloc; kk++) flid_fgid[kk] = my0 + kk; 11892e68589bSMark F. Adams } 11900cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 11910cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(petsc_gamg_setup_events[SET7],0,0,0,0);CHKERRQ(ierr); 11920cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(petsc_gamg_setup_events[SET8],0,0,0,0);CHKERRQ(ierr); 11932e68589bSMark F. Adams #endif 1194c8b0795cSMark F. Adams { 11950298fd71SBarry Smith PetscReal *data_out = NULL; 1196806fa848SBarry Smith ierr = formProl0(agg_lists, bs, data_cols, myCrs0, nbnodes,data_w_ghost, flid_fgid, &data_out, Prol);CHKERRQ(ierr); 1197c8b0795cSMark F. Adams ierr = PetscFree(pc_gamg->data);CHKERRQ(ierr); 11982fa5cd67SKarl Rupp 1199c8b0795cSMark F. Adams pc_gamg->data = data_out; 1200c8b0795cSMark F. Adams pc_gamg->data_cell_rows = data_cols; 1201c8b0795cSMark F. Adams pc_gamg->data_sz = data_cols*data_cols*nLocalSelected; 1202c8b0795cSMark F. Adams } 12030cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 12040cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(petsc_gamg_setup_events[SET8],0,0,0,0);CHKERRQ(ierr); 1205c8b0795cSMark F. Adams #endif 1206c5df96a5SBarry Smith if (size > 1) ierr = PetscFree(data_w_ghost);CHKERRQ(ierr); 12072e68589bSMark F. Adams ierr = PetscFree(flid_fgid);CHKERRQ(ierr); 12082e68589bSMark F. Adams 1209c8b0795cSMark F. Adams *a_P_out = Prol; /* out */ 12100cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG 12110cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(PC_GAMGProlongator_AGG,0,0,0,0);CHKERRQ(ierr); 12120cbbd2e1SMark F. Adams #endif 1213c8b0795cSMark F. Adams PetscFunctionReturn(0); 1214c8b0795cSMark F. Adams } 1215c8b0795cSMark F. Adams 1216c8b0795cSMark F. Adams /* -------------------------------------------------------------------------- */ 1217c8b0795cSMark F. Adams /* 12180cbbd2e1SMark F. Adams PCGAMGOptprol_AGG 1219c8b0795cSMark F. Adams 1220c8b0795cSMark F. Adams Input Parameter: 1221c8b0795cSMark F. Adams . pc - this 1222c8b0795cSMark F. Adams . Amat - matrix on this fine level 1223c8b0795cSMark F. Adams In/Output Parameter: 1224c8b0795cSMark F. Adams . a_P_out - prolongation operator to the next level 1225c8b0795cSMark F. Adams */ 1226c8b0795cSMark F. Adams #undef __FUNCT__ 12270cbbd2e1SMark F. Adams #define __FUNCT__ "PCGAMGOptprol_AGG" 12282fa5cd67SKarl Rupp PetscErrorCode PCGAMGOptprol_AGG(PC pc,const Mat Amat,Mat *a_P) 1229c8b0795cSMark F. Adams { 1230c8b0795cSMark F. Adams PetscErrorCode ierr; 1231c8b0795cSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 1232c8b0795cSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 1233c8b0795cSMark F. Adams const PetscInt verbose = pc_gamg->verbose; 1234c8b0795cSMark F. Adams PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx; 1235c8b0795cSMark F. Adams PetscInt jj; 1236c5df96a5SBarry Smith PetscMPIInt rank,size; 1237c8b0795cSMark F. Adams Mat Prol = *a_P; 12383b4367a7SBarry Smith MPI_Comm comm; 1239c8b0795cSMark F. Adams 1240c8b0795cSMark F. Adams PetscFunctionBegin; 12413b4367a7SBarry Smith ierr = PetscObjectGetComm((PetscObject)Amat,&comm);CHKERRQ(ierr); 12420cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG 12430cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(PC_GAMGOptprol_AGG,0,0,0,0);CHKERRQ(ierr); 12440cbbd2e1SMark F. Adams #endif 12453b4367a7SBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 12463b4367a7SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 1247c8b0795cSMark F. Adams 12482e68589bSMark F. Adams /* smooth P0 */ 1249c8b0795cSMark F. Adams for (jj = 0; jj < pc_gamg_agg->nsmooths; jj++) { 12502e68589bSMark F. Adams Mat tMat; 12512e68589bSMark F. Adams Vec diag; 12522e68589bSMark F. Adams PetscReal alpha, emax, emin; 12530cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 12540cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(petsc_gamg_setup_events[SET9],0,0,0,0);CHKERRQ(ierr); 12552e68589bSMark F. Adams #endif 12562e68589bSMark F. Adams if (jj == 0) { 12572e68589bSMark F. Adams KSP eksp; 12582e68589bSMark F. Adams Vec bb, xx; 1259da509fc8SJed Brown PC epc; 12602e68589bSMark F. Adams ierr = MatGetVecs(Amat, &bb, 0);CHKERRQ(ierr); 12612e68589bSMark F. Adams ierr = MatGetVecs(Amat, &xx, 0);CHKERRQ(ierr); 12622e68589bSMark F. Adams { 12632e68589bSMark F. Adams PetscRandom rctx; 12643b4367a7SBarry Smith ierr = PetscRandomCreate(comm,&rctx);CHKERRQ(ierr); 12652e68589bSMark F. Adams ierr = PetscRandomSetFromOptions(rctx);CHKERRQ(ierr); 12662e68589bSMark F. Adams ierr = VecSetRandom(bb,rctx);CHKERRQ(ierr); 12672e68589bSMark F. Adams ierr = PetscRandomDestroy(&rctx);CHKERRQ(ierr); 12682e68589bSMark F. Adams } 1269e696ed0bSMark F. Adams 1270e696ed0bSMark F. Adams /* zeroing out BC rows -- needed for crazy matrices */ 1271e696ed0bSMark F. Adams { 1272e696ed0bSMark F. Adams PetscInt Istart,Iend,ncols,jj,Ii; 1273e696ed0bSMark F. Adams PetscScalar zero = 0.0; 1274e696ed0bSMark F. Adams ierr = MatGetOwnershipRange(Amat, &Istart, &Iend);CHKERRQ(ierr); 1275e696ed0bSMark F. Adams for (Ii = Istart, jj = 0; Ii < Iend; Ii++, jj++) { 1276e696ed0bSMark F. Adams ierr = MatGetRow(Amat,Ii,&ncols,0,0);CHKERRQ(ierr); 1277e696ed0bSMark F. Adams if (ncols <= 1) { 1278e696ed0bSMark F. Adams ierr = VecSetValues(bb, 1, &Ii, &zero, INSERT_VALUES);CHKERRQ(ierr); 1279e696ed0bSMark F. Adams } 1280e696ed0bSMark F. Adams ierr = MatRestoreRow(Amat,Ii,&ncols,0,0);CHKERRQ(ierr); 1281e696ed0bSMark F. Adams } 1282e696ed0bSMark F. Adams ierr = VecAssemblyBegin(bb);CHKERRQ(ierr); 1283e696ed0bSMark F. Adams ierr = VecAssemblyEnd(bb);CHKERRQ(ierr); 1284e696ed0bSMark F. Adams } 1285e696ed0bSMark F. Adams 12863b4367a7SBarry Smith ierr = KSPCreate(comm,&eksp);CHKERRQ(ierr); 1287806fa848SBarry Smith ierr = KSPSetTolerances(eksp,PETSC_DEFAULT,PETSC_DEFAULT,PETSC_DEFAULT,10);CHKERRQ(ierr); 12882e68589bSMark F. Adams ierr = KSPSetNormType(eksp, KSP_NORM_NONE);CHKERRQ(ierr); 1289da509fc8SJed Brown ierr = KSPSetOptionsPrefix(eksp,((PetscObject)pc)->prefix);CHKERRQ(ierr); 1290c2436cacSMark F. Adams ierr = KSPAppendOptionsPrefix(eksp, "gamg_est_");CHKERRQ(ierr); 1291c2436cacSMark F. Adams ierr = KSPSetFromOptions(eksp);CHKERRQ(ierr); 1292c2436cacSMark F. Adams 1293c2436cacSMark F. Adams ierr = KSPSetInitialGuessNonzero(eksp, PETSC_FALSE);CHKERRQ(ierr); 1294806fa848SBarry Smith ierr = KSPSetOperators(eksp, Amat, Amat, SAME_NONZERO_PATTERN);CHKERRQ(ierr); 12952e68589bSMark F. Adams ierr = KSPSetComputeSingularValues(eksp,PETSC_TRUE);CHKERRQ(ierr); 12962e68589bSMark F. Adams 1297da509fc8SJed Brown ierr = KSPGetPC(eksp, &epc);CHKERRQ(ierr); 1298da509fc8SJed Brown ierr = PCSetType(epc, PCJACOBI);CHKERRQ(ierr); /* smoother in smoothed agg. */ 1299c2436cacSMark F. Adams 13002e68589bSMark F. Adams /* solve - keep stuff out of logging */ 13012e68589bSMark F. Adams ierr = PetscLogEventDeactivate(KSP_Solve);CHKERRQ(ierr); 13022e68589bSMark F. Adams ierr = PetscLogEventDeactivate(PC_Apply);CHKERRQ(ierr); 13032e68589bSMark F. Adams ierr = KSPSolve(eksp, bb, xx);CHKERRQ(ierr); 13042e68589bSMark F. Adams ierr = PetscLogEventActivate(KSP_Solve);CHKERRQ(ierr); 13052e68589bSMark F. Adams ierr = PetscLogEventActivate(PC_Apply);CHKERRQ(ierr); 13062e68589bSMark F. Adams 13072e68589bSMark F. Adams ierr = KSPComputeExtremeSingularValues(eksp, &emax, &emin);CHKERRQ(ierr); 13089f3f12c8SMark F. Adams if (verbose > 0) { 13093b4367a7SBarry Smith PetscPrintf(comm,"\t\t\t%s smooth P0: max eigen=%e min=%e PC=%s\n", 13102e68589bSMark F. Adams __FUNCT__,emax,emin,PCJACOBI); 13112e68589bSMark F. Adams } 13122e68589bSMark F. Adams ierr = VecDestroy(&xx);CHKERRQ(ierr); 13132e68589bSMark F. Adams ierr = VecDestroy(&bb);CHKERRQ(ierr); 13142e68589bSMark F. Adams ierr = KSPDestroy(&eksp);CHKERRQ(ierr); 13152e68589bSMark F. Adams 13162e68589bSMark F. Adams if (pc_gamg->emax_id == -1) { 13173bf036e2SBarry Smith ierr = PetscObjectComposedDataRegister(&pc_gamg->emax_id);CHKERRQ(ierr); 131871959b99SBarry Smith if (pc_gamg->emax_id == -1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"pc_gamg->emax_id == -1"); 13192e68589bSMark F. Adams } 13202e68589bSMark F. Adams ierr = PetscObjectComposedDataSetScalar((PetscObject)Amat, pc_gamg->emax_id, emax);CHKERRQ(ierr); 13212e68589bSMark F. Adams } 13222e68589bSMark F. Adams 13232e68589bSMark F. Adams /* smooth P1 := (I - omega/lam D^{-1}A)P0 */ 13242e68589bSMark F. Adams ierr = MatMatMult(Amat, Prol, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &tMat);CHKERRQ(ierr); 13252e68589bSMark F. Adams ierr = MatGetVecs(Amat, &diag, 0);CHKERRQ(ierr); 13262e68589bSMark F. Adams ierr = MatGetDiagonal(Amat, diag);CHKERRQ(ierr); /* effectively PCJACOBI */ 13272e68589bSMark F. Adams ierr = VecReciprocal(diag);CHKERRQ(ierr); 13282e68589bSMark F. Adams ierr = MatDiagonalScale(tMat, diag, 0);CHKERRQ(ierr); 13292e68589bSMark F. Adams ierr = VecDestroy(&diag);CHKERRQ(ierr); 1330b4ec6429SMark F. Adams alpha = -1.4/emax; 13312e68589bSMark F. Adams ierr = MatAYPX(tMat, alpha, Prol, SUBSET_NONZERO_PATTERN);CHKERRQ(ierr); 13322e68589bSMark F. Adams ierr = MatDestroy(&Prol);CHKERRQ(ierr); 13332e68589bSMark F. Adams Prol = tMat; 13340cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 13350cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(petsc_gamg_setup_events[SET9],0,0,0,0);CHKERRQ(ierr); 13362e68589bSMark F. Adams #endif 13372e68589bSMark F. Adams } 13380cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG 13390cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(PC_GAMGOptprol_AGG,0,0,0,0);CHKERRQ(ierr); 13400cbbd2e1SMark F. Adams #endif 1341c8b0795cSMark F. Adams *a_P = Prol; 1342c8b0795cSMark F. Adams PetscFunctionReturn(0); 13432e68589bSMark F. Adams } 13442e68589bSMark F. Adams 1345c8b0795cSMark F. Adams /* -------------------------------------------------------------------------- */ 1346c8b0795cSMark F. Adams /* 1347c8b0795cSMark F. Adams PCCreateGAMG_AGG 13482e68589bSMark F. Adams 1349c8b0795cSMark F. Adams Input Parameter: 1350c8b0795cSMark F. Adams . pc - 1351c8b0795cSMark F. Adams */ 1352c8b0795cSMark F. Adams #undef __FUNCT__ 1353c8b0795cSMark F. Adams #define __FUNCT__ "PCCreateGAMG_AGG" 1354c8b0795cSMark F. Adams PetscErrorCode PCCreateGAMG_AGG(PC pc) 1355c8b0795cSMark F. Adams { 1356c8b0795cSMark F. Adams PetscErrorCode ierr; 1357c8b0795cSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 1358c8b0795cSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 1359c8b0795cSMark F. Adams PC_GAMG_AGG *pc_gamg_agg; 13602e68589bSMark F. Adams 1361c8b0795cSMark F. Adams PetscFunctionBegin; 1362c8b0795cSMark F. Adams /* create sub context for SA */ 1363c8b0795cSMark F. Adams ierr = PetscNewLog(pc, PC_GAMG_AGG, &pc_gamg_agg);CHKERRQ(ierr); 1364c8b0795cSMark F. Adams pc_gamg->subctx = pc_gamg_agg; 1365c8b0795cSMark F. Adams 13661ab5ffc9SJed Brown pc_gamg->ops->setfromoptions = PCSetFromOptions_GAMG_AGG; 13679b8ffb57SJed Brown pc_gamg->ops->destroy = PCDestroy_GAMG_AGG; 1368c8b0795cSMark F. Adams /* reset does not do anything; setup not virtual */ 1369c8b0795cSMark F. Adams 1370c8b0795cSMark F. Adams /* set internal function pointers */ 13711ab5ffc9SJed Brown pc_gamg->ops->graph = PCGAMGgraph_AGG; 13721ab5ffc9SJed Brown pc_gamg->ops->coarsen = PCGAMGCoarsen_AGG; 13731ab5ffc9SJed Brown pc_gamg->ops->prolongator = PCGAMGProlongator_AGG; 13741ab5ffc9SJed Brown pc_gamg->ops->optprol = PCGAMGOptprol_AGG; 1375c8b0795cSMark F. Adams 13761ab5ffc9SJed Brown pc_gamg->ops->createdefaultdata = PCSetData_AGG; 1377c8b0795cSMark F. Adams 1378bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)pc,"PCSetCoordinates_C",PCSetCoordinates_AGG);CHKERRQ(ierr); 13792e68589bSMark F. Adams PetscFunctionReturn(0); 13802e68589bSMark F. Adams } 1381