12e68589bSMark F. Adams /* 22e68589bSMark F. Adams GAMG geometric-algebric multiogrid PC - Mark Adams 2011 32e68589bSMark F. Adams */ 42e68589bSMark F. Adams 52e68589bSMark F. Adams #include <../src/ksp/pc/impls/gamg/gamg.h> /*I "petscpc.h" I*/ 6b45d2f2cSJed Brown #include <petsc-private/kspimpl.h> 72e68589bSMark F. Adams 82e68589bSMark F. Adams #include <petscblaslapack.h> 92e68589bSMark F. Adams 102e68589bSMark F. Adams typedef struct { 11c8b0795cSMark F. Adams PetscInt nsmooths; 12c8b0795cSMark F. Adams PetscBool sym_graph; 13ef4ad70eSMark F. Adams PetscBool square_graph; 142e68589bSMark F. Adams } PC_GAMG_AGG; 152e68589bSMark F. Adams 162e68589bSMark F. Adams #undef __FUNCT__ 172e68589bSMark F. Adams #define __FUNCT__ "PCGAMGSetNSmooths" 182e68589bSMark F. Adams /*@ 192e68589bSMark F. Adams PCGAMGSetNSmooths - Set number of smoothing steps (1 is typical) 202e68589bSMark F. Adams 212e68589bSMark F. Adams Not Collective on PC 222e68589bSMark F. Adams 232e68589bSMark F. Adams Input Parameters: 242e68589bSMark F. Adams . pc - the preconditioner context 252e68589bSMark F. Adams 262e68589bSMark F. Adams Options Database Key: 272e68589bSMark F. Adams . -pc_gamg_agg_nsmooths 282e68589bSMark F. Adams 292e68589bSMark F. Adams Level: intermediate 302e68589bSMark F. Adams 312e68589bSMark F. Adams Concepts: Aggregation AMG preconditioner 322e68589bSMark F. Adams 332e68589bSMark F. Adams .seealso: () 342e68589bSMark F. Adams @*/ 352e68589bSMark F. Adams PetscErrorCode PCGAMGSetNSmooths(PC pc, PetscInt n) 362e68589bSMark F. Adams { 372e68589bSMark F. Adams PetscErrorCode ierr; 382e68589bSMark F. Adams 392e68589bSMark F. Adams PetscFunctionBegin; 402e68589bSMark F. Adams PetscValidHeaderSpecific(pc,PC_CLASSID,1); 412e68589bSMark F. Adams ierr = PetscTryMethod(pc,"PCGAMGSetNSmooths_C",(PC,PetscInt),(pc,n));CHKERRQ(ierr); 422e68589bSMark F. Adams PetscFunctionReturn(0); 432e68589bSMark F. Adams } 442e68589bSMark F. Adams 452e68589bSMark F. Adams EXTERN_C_BEGIN 462e68589bSMark F. Adams #undef __FUNCT__ 472e68589bSMark F. Adams #define __FUNCT__ "PCGAMGSetNSmooths_GAMG" 482e68589bSMark F. Adams PetscErrorCode PCGAMGSetNSmooths_GAMG(PC pc, PetscInt n) 492e68589bSMark F. Adams { 502e68589bSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 512e68589bSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 52c8b0795cSMark F. Adams PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx; 532e68589bSMark F. Adams 542e68589bSMark F. Adams PetscFunctionBegin; 55c8b0795cSMark F. Adams pc_gamg_agg->nsmooths = n; 56c8b0795cSMark F. Adams PetscFunctionReturn(0); 57c8b0795cSMark F. Adams } 58c8b0795cSMark F. Adams EXTERN_C_END 59c8b0795cSMark F. Adams 60c8b0795cSMark F. Adams #undef __FUNCT__ 61c8b0795cSMark F. Adams #define __FUNCT__ "PCGAMGSetSymGraph" 62c8b0795cSMark F. Adams /*@ 63c8b0795cSMark F. Adams PCGAMGSetSymGraph - 64c8b0795cSMark F. Adams 65c8b0795cSMark F. Adams Not Collective on PC 66c8b0795cSMark F. Adams 67c8b0795cSMark F. Adams Input Parameters: 68c8b0795cSMark F. Adams . pc - the preconditioner context 69c8b0795cSMark F. Adams 70c8b0795cSMark F. Adams Options Database Key: 71c8b0795cSMark F. Adams . -pc_gamg_sym_graph 72c8b0795cSMark F. Adams 73c8b0795cSMark F. Adams Level: intermediate 74c8b0795cSMark F. Adams 75c8b0795cSMark F. Adams Concepts: Aggregation AMG preconditioner 76c8b0795cSMark F. Adams 77c8b0795cSMark F. Adams .seealso: () 78c8b0795cSMark F. Adams @*/ 79c8b0795cSMark F. Adams PetscErrorCode PCGAMGSetSymGraph(PC pc, PetscBool n) 80c8b0795cSMark F. Adams { 81c8b0795cSMark F. Adams PetscErrorCode ierr; 82c8b0795cSMark F. Adams 83c8b0795cSMark F. Adams PetscFunctionBegin; 84c8b0795cSMark F. Adams PetscValidHeaderSpecific(pc,PC_CLASSID,1); 85c8b0795cSMark F. Adams ierr = PetscTryMethod(pc,"PCGAMGSetSymGraph_C",(PC,PetscBool),(pc,n));CHKERRQ(ierr); 86c8b0795cSMark F. Adams PetscFunctionReturn(0); 87c8b0795cSMark F. Adams } 88c8b0795cSMark F. Adams 89c8b0795cSMark F. Adams EXTERN_C_BEGIN 90c8b0795cSMark F. Adams #undef __FUNCT__ 91c8b0795cSMark F. Adams #define __FUNCT__ "PCGAMGSetSymGraph_GAMG" 92c8b0795cSMark F. Adams PetscErrorCode PCGAMGSetSymGraph_GAMG(PC pc, PetscBool n) 93c8b0795cSMark F. Adams { 94c8b0795cSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 95c8b0795cSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 96c8b0795cSMark F. Adams PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx; 97c8b0795cSMark F. Adams 98c8b0795cSMark F. Adams PetscFunctionBegin; 99c8b0795cSMark F. Adams pc_gamg_agg->sym_graph = n; 1002e68589bSMark F. Adams PetscFunctionReturn(0); 1012e68589bSMark F. Adams } 1022e68589bSMark F. Adams EXTERN_C_END 1032e68589bSMark F. Adams 104ef4ad70eSMark F. Adams #undef __FUNCT__ 105ef4ad70eSMark F. Adams #define __FUNCT__ "PCGAMGSetSquareGraph" 106ef4ad70eSMark F. Adams /*@ 107ef4ad70eSMark F. Adams PCGAMGSetSquareGraph - 108ef4ad70eSMark F. Adams 109ef4ad70eSMark F. Adams Not Collective on PC 110ef4ad70eSMark F. Adams 111ef4ad70eSMark F. Adams Input Parameters: 112ef4ad70eSMark F. Adams . pc - the preconditioner context 113ef4ad70eSMark F. Adams 114ef4ad70eSMark F. Adams Options Database Key: 115ef4ad70eSMark F. Adams . -pc_gamg_square_graph 116ef4ad70eSMark F. Adams 117ef4ad70eSMark F. Adams Level: intermediate 118ef4ad70eSMark F. Adams 119ef4ad70eSMark F. Adams Concepts: Aggregation AMG preconditioner 120ef4ad70eSMark F. Adams 121ef4ad70eSMark F. Adams .seealso: () 122ef4ad70eSMark F. Adams @*/ 123ef4ad70eSMark F. Adams PetscErrorCode PCGAMGSetSquareGraph(PC pc, PetscBool n) 124ef4ad70eSMark F. Adams { 125ef4ad70eSMark F. Adams PetscErrorCode ierr; 126ef4ad70eSMark F. Adams 127ef4ad70eSMark F. Adams PetscFunctionBegin; 128ef4ad70eSMark F. Adams PetscValidHeaderSpecific(pc,PC_CLASSID,1); 129ef4ad70eSMark F. Adams ierr = PetscTryMethod(pc,"PCGAMGSetSquareGraph_C",(PC,PetscBool),(pc,n));CHKERRQ(ierr); 130ef4ad70eSMark F. Adams PetscFunctionReturn(0); 131ef4ad70eSMark F. Adams } 132ef4ad70eSMark F. Adams 133ef4ad70eSMark F. Adams EXTERN_C_BEGIN 134ef4ad70eSMark F. Adams #undef __FUNCT__ 135ef4ad70eSMark F. Adams #define __FUNCT__ "PCGAMGSetSquareGraph_GAMG" 136ef4ad70eSMark F. Adams PetscErrorCode PCGAMGSetSquareGraph_GAMG(PC pc, PetscBool n) 137ef4ad70eSMark F. Adams { 138ef4ad70eSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 139ef4ad70eSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 140ef4ad70eSMark F. Adams PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx; 141ef4ad70eSMark F. Adams 142ef4ad70eSMark F. Adams PetscFunctionBegin; 143ef4ad70eSMark F. Adams pc_gamg_agg->square_graph = n; 144ef4ad70eSMark F. Adams PetscFunctionReturn(0); 145ef4ad70eSMark F. Adams } 146ef4ad70eSMark F. Adams EXTERN_C_END 147ef4ad70eSMark F. Adams 1482e68589bSMark F. Adams /* -------------------------------------------------------------------------- */ 1492e68589bSMark F. Adams /* 1502e68589bSMark F. Adams PCSetFromOptions_GAMG_AGG 1512e68589bSMark F. Adams 1522e68589bSMark F. Adams Input Parameter: 1532e68589bSMark F. Adams . pc - 1542e68589bSMark F. Adams */ 1552e68589bSMark F. Adams #undef __FUNCT__ 1562e68589bSMark F. Adams #define __FUNCT__ "PCSetFromOptions_GAMG_AGG" 1572e68589bSMark F. Adams PetscErrorCode PCSetFromOptions_GAMG_AGG(PC pc) 1582e68589bSMark F. Adams { 1592e68589bSMark F. Adams PetscErrorCode ierr; 1602e68589bSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 1612e68589bSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 162c8b0795cSMark F. Adams PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx; 1632e68589bSMark F. Adams PetscBool flag; 1642e68589bSMark F. Adams 1652e68589bSMark F. Adams PetscFunctionBegin; 1662e68589bSMark F. Adams /* call base class */ 1672e68589bSMark F. Adams ierr = PCSetFromOptions_GAMG(pc);CHKERRQ(ierr); 1682e68589bSMark F. Adams 1692e68589bSMark F. Adams ierr = PetscOptionsHead("GAMG-AGG options");CHKERRQ(ierr); 1702e68589bSMark F. Adams { 1712e68589bSMark F. Adams /* -pc_gamg_agg_nsmooths */ 172c8b0795cSMark F. Adams pc_gamg_agg->nsmooths = 0; 1732fa5cd67SKarl Rupp 1742e68589bSMark F. Adams ierr = PetscOptionsInt("-pc_gamg_agg_nsmooths", 1752e68589bSMark F. Adams "smoothing steps for smoothed aggregation, usually 1 (0)", 1762e68589bSMark F. Adams "PCGAMGSetNSmooths", 177c8b0795cSMark F. Adams pc_gamg_agg->nsmooths, 178c8b0795cSMark F. Adams &pc_gamg_agg->nsmooths, 179806fa848SBarry Smith &flag);CHKERRQ(ierr); 180c8b0795cSMark F. Adams 181c8b0795cSMark F. Adams /* -pc_gamg_sym_graph */ 182c8b0795cSMark F. Adams pc_gamg_agg->sym_graph = PETSC_FALSE; 1832fa5cd67SKarl Rupp 184c8b0795cSMark F. Adams ierr = PetscOptionsBool("-pc_gamg_sym_graph", 185581a99e3SJed Brown "Set for asymmetric matrices", 186c8b0795cSMark F. Adams "PCGAMGSetSymGraph", 187c8b0795cSMark F. Adams pc_gamg_agg->sym_graph, 188c8b0795cSMark F. Adams &pc_gamg_agg->sym_graph, 189806fa848SBarry Smith &flag);CHKERRQ(ierr); 190ef4ad70eSMark F. Adams 191ef4ad70eSMark F. Adams /* -pc_gamg_square_graph */ 192ef4ad70eSMark F. Adams pc_gamg_agg->square_graph = PETSC_TRUE; 1932fa5cd67SKarl Rupp 194ef4ad70eSMark F. Adams ierr = PetscOptionsBool("-pc_gamg_square_graph", 1950cbbd2e1SMark F. Adams "For faster coarsening and lower coarse grid complexity", 196ef4ad70eSMark F. Adams "PCGAMGSetSquareGraph", 197ef4ad70eSMark F. Adams pc_gamg_agg->square_graph, 198ef4ad70eSMark F. Adams &pc_gamg_agg->square_graph, 199806fa848SBarry Smith &flag);CHKERRQ(ierr); 2002e68589bSMark F. Adams } 2012e68589bSMark F. Adams ierr = PetscOptionsTail();CHKERRQ(ierr); 2022e68589bSMark F. Adams PetscFunctionReturn(0); 2032e68589bSMark F. Adams } 2042e68589bSMark F. Adams 2052e68589bSMark F. Adams /* -------------------------------------------------------------------------- */ 2062e68589bSMark F. Adams /* 2072e68589bSMark F. Adams PCDestroy_AGG 2082e68589bSMark F. Adams 2092e68589bSMark F. Adams Input Parameter: 2102e68589bSMark F. Adams . pc - 2112e68589bSMark F. Adams */ 2122e68589bSMark F. Adams #undef __FUNCT__ 2132e68589bSMark F. Adams #define __FUNCT__ "PCDestroy_AGG" 2142e68589bSMark F. Adams PetscErrorCode PCDestroy_AGG(PC pc) 2152e68589bSMark F. Adams { 2162e68589bSMark F. Adams PetscErrorCode ierr; 2172e68589bSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 2182e68589bSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 219c8b0795cSMark F. Adams PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx; 2202e68589bSMark F. Adams 2212e68589bSMark F. Adams PetscFunctionBegin; 222c8b0795cSMark F. Adams if (pc_gamg_agg) { 223c8b0795cSMark F. Adams ierr = PetscFree(pc_gamg_agg);CHKERRQ(ierr); 224c8b0795cSMark F. Adams pc_gamg_agg = 0; 2252e68589bSMark F. Adams } 2262e68589bSMark F. Adams 2272e68589bSMark F. Adams /* call base class */ 2282e68589bSMark F. Adams ierr = PCDestroy_GAMG(pc);CHKERRQ(ierr); 2292e68589bSMark F. Adams PetscFunctionReturn(0); 2302e68589bSMark F. Adams } 2312e68589bSMark F. Adams 2322e68589bSMark F. Adams /* -------------------------------------------------------------------------- */ 2332e68589bSMark F. Adams /* 2342e68589bSMark F. Adams PCSetCoordinates_AGG 235302f38e8SMark F. Adams - collective 2362e68589bSMark F. Adams 2372e68589bSMark F. Adams Input Parameter: 2382e68589bSMark F. Adams . pc - the preconditioner context 239a2f3521dSMark F. Adams . ndm - dimesion of data (used for dof/vertex for Stokes) 240302f38e8SMark F. Adams . a_nloc - number of vertices local 241302f38e8SMark F. Adams . coords - [a_nloc][ndm] - interleaved coordinate data: {x_0, y_0, z_0, x_1, y_1, ...} 2422e68589bSMark F. Adams */ 2432e68589bSMark F. Adams EXTERN_C_BEGIN 2442e68589bSMark F. Adams #undef __FUNCT__ 2452e68589bSMark F. Adams #define __FUNCT__ "PCSetCoordinates_AGG" 246302f38e8SMark F. Adams PetscErrorCode PCSetCoordinates_AGG(PC pc, PetscInt ndm, PetscInt a_nloc, PetscReal *coords) 2472e68589bSMark F. Adams { 2482e68589bSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 2492e68589bSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 2502e68589bSMark F. Adams PetscErrorCode ierr; 25169344418SMark F. Adams PetscInt arrsz,kk,ii,jj,nloc,ndatarows,ndf; 252a2f3521dSMark F. Adams Mat mat = pc->pmat; 253a2f3521dSMark F. Adams /* MPI_Comm wcomm = ((PetscObject)pc)->comm; */ 2542e68589bSMark F. Adams 2552e68589bSMark F. Adams PetscFunctionBegin; 256a2f3521dSMark F. Adams PetscValidHeaderSpecific(pc,PC_CLASSID,1); 257a2f3521dSMark F. Adams PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 258302f38e8SMark F. Adams nloc = a_nloc; 2592e68589bSMark F. Adams 2602e68589bSMark F. Adams /* SA: null space vectors */ 26169344418SMark F. Adams ierr = MatGetBlockSize(mat, &ndf);CHKERRQ(ierr); /* this does not work for Stokes */ 26269344418SMark F. Adams if (coords && ndf==1) pc_gamg->data_cell_cols = 1; /* scalar w/ coords and SA (not needed) */ 263a2f3521dSMark F. Adams else if (coords) { 264c666adbfSMark F. Adams if (ndm > ndf) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"degrees of motion %d > block size %d",ndm,ndf); 26569344418SMark F. Adams pc_gamg->data_cell_cols = (ndm==2 ? 3 : 6); /* displacement elasticity */ 26669344418SMark F. Adams if (ndm != ndf) { 267c666adbfSMark F. Adams if (pc_gamg->data_cell_cols != ndf) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Don't know how to create null space for ndm=%d, ndf=%d. Use MatSetNearNullSpace.",ndm,ndf); 268a2f3521dSMark F. Adams } 269806fa848SBarry Smith } else pc_gamg->data_cell_cols = ndf; /* no data, force SA with constant null space vectors */ 270*71959b99SBarry Smith pc_gamg->data_cell_rows = ndatarows = ndf; 271*71959b99SBarry Smith if (pc_gamg->data_cell_cols <= 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"pc_gamg->data_cell_cols %D <= 0",pc_gamg->data_cell_cols); 272c8b0795cSMark F. Adams arrsz = nloc*pc_gamg->data_cell_rows*pc_gamg->data_cell_cols; 2732e68589bSMark F. Adams 2742e68589bSMark F. Adams /* create data - syntactic sugar that should be refactored at some point */ 2752e68589bSMark F. Adams if (pc_gamg->data==0 || (pc_gamg->data_sz != arrsz)) { 2762e68589bSMark F. Adams ierr = PetscFree(pc_gamg->data);CHKERRQ(ierr); 277302f38e8SMark F. Adams ierr = PetscMalloc((arrsz+1)*sizeof(PetscReal), &pc_gamg->data);CHKERRQ(ierr); 2782e68589bSMark F. Adams } 2792e68589bSMark F. Adams /* copy data in - column oriented */ 2802e68589bSMark F. Adams for (kk=0; kk<nloc; kk++) { 28169344418SMark F. Adams const PetscInt M = nloc*pc_gamg->data_cell_rows; /* stride into data */ 28269344418SMark F. Adams PetscReal *data = &pc_gamg->data[kk*ndatarows]; /* start of cell */ 283c8b0795cSMark F. Adams if (pc_gamg->data_cell_cols==1) *data = 1.0; 2842e68589bSMark F. Adams else { 28569344418SMark F. Adams /* translational modes */ 2862fa5cd67SKarl Rupp for (ii=0;ii<ndatarows;ii++) { 2872fa5cd67SKarl Rupp for (jj=0;jj<ndatarows;jj++) { 28869344418SMark F. Adams if (ii==jj)data[ii*M + jj] = 1.0; 2892e68589bSMark F. Adams else data[ii*M + jj] = 0.0; 2902fa5cd67SKarl Rupp } 2912fa5cd67SKarl Rupp } 29269344418SMark F. Adams 29369344418SMark F. Adams /* rotational modes */ 2942e68589bSMark F. Adams if (coords) { 29569344418SMark F. Adams if (ndm == 2) { 2962e68589bSMark F. Adams data += 2*M; 2972e68589bSMark F. Adams data[0] = -coords[2*kk+1]; 2982e68589bSMark F. Adams data[1] = coords[2*kk]; 299806fa848SBarry Smith } else { 3002e68589bSMark F. Adams data += 3*M; 3012e68589bSMark F. Adams data[0] = 0.0; data[M+0] = coords[3*kk+2]; data[2*M+0] = -coords[3*kk+1]; 3022e68589bSMark F. Adams data[1] = -coords[3*kk+2]; data[M+1] = 0.0; data[2*M+1] = coords[3*kk]; 3032e68589bSMark F. Adams data[2] = coords[3*kk+1]; data[M+2] = -coords[3*kk]; data[2*M+2] = 0.0; 3042e68589bSMark F. Adams } 3052e68589bSMark F. Adams } 3062e68589bSMark F. Adams } 3072e68589bSMark F. Adams } 3082e68589bSMark F. Adams 3092e68589bSMark F. Adams pc_gamg->data_sz = arrsz; 3102e68589bSMark F. Adams PetscFunctionReturn(0); 3112e68589bSMark F. Adams } 3122e68589bSMark F. Adams EXTERN_C_END 3132e68589bSMark F. Adams 314b43b03e9SMark F. Adams typedef PetscInt NState; 315b43b03e9SMark F. Adams static const NState NOT_DONE=-2; 316b43b03e9SMark F. Adams static const NState DELETED =-1; 317b43b03e9SMark F. Adams static const NState REMOVED =-3; 318b43b03e9SMark F. Adams #define IS_SELECTED(s) (s!=DELETED && s!=NOT_DONE && s!=REMOVED) 319b43b03e9SMark F. Adams 320c8b0795cSMark F. Adams /* -------------------------------------------------------------------------- */ 321c8b0795cSMark F. Adams /* 322b43b03e9SMark F. Adams smoothAggs - greedy grab of with G1 (unsquared graph) -- AIJ specific 323b43b03e9SMark F. Adams - AGG-MG specific: clears singletons out of 'selected_2' 324c8b0795cSMark F. Adams 325c8b0795cSMark F. Adams Input Parameter: 326c8b0795cSMark F. Adams . Gmat_2 - glabal matrix of graph (data not defined) 327c8b0795cSMark F. Adams . Gmat_1 - base graph to grab with 328c8b0795cSMark F. Adams Input/Output Parameter: 3290cbbd2e1SMark F. Adams . aggs_2 - linked list of aggs with gids) 330c8b0795cSMark F. Adams */ 331c8b0795cSMark F. Adams #undef __FUNCT__ 332c8b0795cSMark F. Adams #define __FUNCT__ "smoothAggs" 3330cbbd2e1SMark F. Adams static PetscErrorCode smoothAggs(const Mat Gmat_2, /* base (squared) graph */ 3340cbbd2e1SMark F. Adams const Mat Gmat_1, /* base graph */ 3350cbbd2e1SMark F. Adams /* const IS selected_2, [nselected local] selected vertices */ 3361147fc2aSKarl Rupp PetscCoarsenData *aggs_2) /* [nselected local] global ID of aggregate */ 337c8b0795cSMark F. Adams { 338c8b0795cSMark F. Adams PetscErrorCode ierr; 339c8b0795cSMark F. Adams PetscBool isMPI; 340c8b0795cSMark F. Adams Mat_SeqAIJ *matA_1, *matB_1=0, *matA_2, *matB_2=0; 341c8b0795cSMark F. Adams MPI_Comm wcomm = ((PetscObject)Gmat_2)->comm; 342c5df96a5SBarry Smith PetscMPIInt rank,size; 3430cbbd2e1SMark F. Adams PetscInt lid,*ii,*idx,ix,Iend,my0,kk,n,j; 344c8b0795cSMark F. Adams Mat_MPIAIJ *mpimat_2 = 0, *mpimat_1=0; 345c8b0795cSMark F. Adams const PetscInt nloc = Gmat_2->rmap->n; 3460cbbd2e1SMark F. Adams PetscScalar *cpcol_1_state,*cpcol_2_state,*cpcol_2_par_orig,*lid_parent_gid; 3470cbbd2e1SMark F. Adams PetscInt *lid_cprowID_1; 348c8b0795cSMark F. Adams NState *lid_state; 3490cbbd2e1SMark F. Adams Vec ghost_par_orig2; 350c8b0795cSMark F. Adams 351c8b0795cSMark F. Adams PetscFunctionBegin; 352c5df96a5SBarry Smith ierr = MPI_Comm_rank(wcomm, &rank);CHKERRQ(ierr); 353c5df96a5SBarry Smith ierr = MPI_Comm_size(wcomm, &size);CHKERRQ(ierr); 354c8b0795cSMark F. Adams ierr = MatGetOwnershipRange(Gmat_1,&my0,&Iend);CHKERRQ(ierr); 355c8b0795cSMark F. Adams 3560cbbd2e1SMark F. Adams if (PETSC_FALSE) { 357c8b0795cSMark F. Adams PetscViewer viewer; char fname[32]; static int llev=0; 358c8b0795cSMark F. Adams sprintf(fname,"Gmat2_%d.m",llev++); 359c8b0795cSMark F. Adams PetscViewerASCIIOpen(wcomm,fname,&viewer); 360c8b0795cSMark F. Adams ierr = PetscViewerSetFormat(viewer, PETSC_VIEWER_ASCII_MATLAB);CHKERRQ(ierr); 361c8b0795cSMark F. Adams ierr = MatView(Gmat_2, viewer);CHKERRQ(ierr); 362c8b0795cSMark F. Adams ierr = PetscViewerDestroy(&viewer); 363c8b0795cSMark F. Adams } 364c8b0795cSMark F. Adams 365c8b0795cSMark F. Adams /* get submatrices */ 366251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)Gmat_1, MATMPIAIJ, &isMPI);CHKERRQ(ierr); 367c8b0795cSMark F. Adams if (isMPI) { 368c8b0795cSMark F. Adams /* grab matrix objects */ 369c8b0795cSMark F. Adams mpimat_2 = (Mat_MPIAIJ*)Gmat_2->data; 370c8b0795cSMark F. Adams mpimat_1 = (Mat_MPIAIJ*)Gmat_1->data; 371c8b0795cSMark F. Adams matA_1 = (Mat_SeqAIJ*)mpimat_1->A->data; 372c8b0795cSMark F. Adams matB_1 = (Mat_SeqAIJ*)mpimat_1->B->data; 373c8b0795cSMark F. Adams matA_2 = (Mat_SeqAIJ*)mpimat_2->A->data; 374c8b0795cSMark F. Adams matB_2 = (Mat_SeqAIJ*)mpimat_2->B->data; 375c8b0795cSMark F. Adams 376c8b0795cSMark F. Adams /* force compressed row storage for B matrix in AuxMat */ 377c8b0795cSMark F. Adams matB_1->compressedrow.check = PETSC_TRUE; 3782fa5cd67SKarl Rupp 379806fa848SBarry Smith ierr = MatCheckCompressedRow(mpimat_1->B,&matB_1->compressedrow,matB_1->i,Gmat_1->rmap->n,-1.0);CHKERRQ(ierr); 380c8b0795cSMark F. Adams 381c8b0795cSMark F. Adams ierr = PetscMalloc(nloc*sizeof(PetscInt), &lid_cprowID_1);CHKERRQ(ierr); 3820cbbd2e1SMark F. Adams for (lid = 0; lid < nloc; lid++) lid_cprowID_1[lid] = -1; 383c8b0795cSMark F. Adams for (ix=0; ix<matB_1->compressedrow.nrows; ix++) { 384c8b0795cSMark F. Adams PetscInt lid = matB_1->compressedrow.rindex[ix]; 385c8b0795cSMark F. Adams lid_cprowID_1[lid] = ix; 386c8b0795cSMark F. Adams } 387806fa848SBarry Smith } else { 388c8b0795cSMark F. Adams matA_1 = (Mat_SeqAIJ*)Gmat_1->data; 389c8b0795cSMark F. Adams matA_2 = (Mat_SeqAIJ*)Gmat_2->data; 3900298fd71SBarry Smith lid_cprowID_1 = NULL; 391c8b0795cSMark F. Adams } 392*71959b99SBarry Smith if (!(matA_1 && !matA_1->compressedrow.use)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"!(matA_1 && !matA_1->compressedrow.use)"); 393*71959b99SBarry Smith if (!(matB_1==0 || matB_1->compressedrow.use)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"!(matB_1==0 || matB_1->compressedrow.use)"); 394*71959b99SBarry Smith if (!(matA_2 && !matA_2->compressedrow.use)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"!(matA_2 && !matA_2->compressedrow.use)"); 395*71959b99SBarry Smith if (!(matB_2==0 || matB_2->compressedrow.use)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"!(matB_2==0 || matB_2->compressedrow.use)"); 396c8b0795cSMark F. Adams 397c8b0795cSMark F. Adams /* get state of locals and selected gid for deleted */ 398c8b0795cSMark F. Adams ierr = PetscMalloc(nloc*sizeof(NState), &lid_state);CHKERRQ(ierr); 3990cbbd2e1SMark F. Adams ierr = PetscMalloc(nloc*sizeof(PetscScalar), &lid_parent_gid);CHKERRQ(ierr); 400c8b0795cSMark F. Adams for (lid = 0; lid < nloc; lid++) { 4010cbbd2e1SMark F. Adams lid_parent_gid[lid] = -1.0; 402c8b0795cSMark F. Adams lid_state[lid] = DELETED; 403c8b0795cSMark F. Adams } 4040cbbd2e1SMark F. Adams 4050cbbd2e1SMark F. Adams /* set lid_state */ 4060cbbd2e1SMark F. Adams for (lid = 0; lid < nloc; lid++) { 40741b27cdeSMark F. Adams PetscCDPos pos; 408e78576d6SMark F. Adams ierr = PetscCDGetHeadPos(aggs_2,lid,&pos);CHKERRQ(ierr); 409e78576d6SMark F. Adams if (pos) { 410e78576d6SMark F. Adams PetscInt gid1; 4112fa5cd67SKarl Rupp 412*71959b99SBarry Smith ierr = PetscLLNGetID(pos, &gid1);CHKERRQ(ierr); 413*71959b99SBarry Smith if (gid1 != lid+my0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"gid1 %D != lid %D + my0 %D",gid1,lid,my0); 4140cbbd2e1SMark F. Adams lid_state[lid] = gid1; 415b43b03e9SMark F. Adams } 416b43b03e9SMark F. Adams } 4170cbbd2e1SMark F. Adams 4180cbbd2e1SMark F. Adams /* map local to selected local, DELETED means a ghost owns it */ 419c8b0795cSMark F. Adams for (lid=kk=0; lid<nloc; lid++) { 420c8b0795cSMark F. Adams NState state = lid_state[lid]; 421c8b0795cSMark F. Adams if (IS_SELECTED(state)) { 42241b27cdeSMark F. Adams PetscCDPos pos; 423e78576d6SMark F. Adams ierr = PetscCDGetHeadPos(aggs_2,lid,&pos);CHKERRQ(ierr); 424e78576d6SMark F. Adams while (pos) { 425e78576d6SMark F. Adams PetscInt gid1; 426ffc955d6SMark F. Adams ierr = PetscLLNGetID(pos, &gid1);CHKERRQ(ierr); 427e78576d6SMark F. Adams ierr = PetscCDGetNextPos(aggs_2,lid,&pos);CHKERRQ(ierr); 428e78576d6SMark F. Adams 4292fa5cd67SKarl Rupp if (gid1 >= my0 && gid1 < Iend) lid_parent_gid[gid1-my0] = (PetscScalar)(lid + my0); 430c8b0795cSMark F. Adams } 4310cbbd2e1SMark F. Adams } 4320cbbd2e1SMark F. Adams } 4330cbbd2e1SMark F. Adams /* get 'cpcol_1/2_state' & cpcol_2_par_orig - uses mpimat_1/2->lvec for temp space */ 434c8b0795cSMark F. Adams if (isMPI) { 435c8b0795cSMark F. Adams Vec tempVec; 436c8b0795cSMark F. Adams /* get 'cpcol_1_state' */ 437c8b0795cSMark F. Adams ierr = MatGetVecs(Gmat_1, &tempVec, 0);CHKERRQ(ierr); 438c8b0795cSMark F. Adams for (kk=0,j=my0; kk<nloc; kk++,j++) { 439c8b0795cSMark F. Adams PetscScalar v = (PetscScalar)lid_state[kk]; 440c8b0795cSMark F. Adams ierr = VecSetValues(tempVec, 1, &j, &v, INSERT_VALUES);CHKERRQ(ierr); 441c8b0795cSMark F. Adams } 442c8b0795cSMark F. Adams ierr = VecAssemblyBegin(tempVec);CHKERRQ(ierr); 443c8b0795cSMark F. Adams ierr = VecAssemblyEnd(tempVec);CHKERRQ(ierr); 444806fa848SBarry Smith ierr = VecScatterBegin(mpimat_1->Mvctx,tempVec, mpimat_1->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 445806fa848SBarry Smith ierr = VecScatterEnd(mpimat_1->Mvctx,tempVec, mpimat_1->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 446c8b0795cSMark F. Adams ierr = VecGetArray(mpimat_1->lvec, &cpcol_1_state);CHKERRQ(ierr); 447c8b0795cSMark F. Adams /* get 'cpcol_2_state' */ 448806fa848SBarry Smith ierr = VecScatterBegin(mpimat_2->Mvctx,tempVec, mpimat_2->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 449806fa848SBarry Smith ierr = VecScatterEnd(mpimat_2->Mvctx,tempVec, mpimat_2->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 450c8b0795cSMark F. Adams ierr = VecGetArray(mpimat_2->lvec, &cpcol_2_state);CHKERRQ(ierr); 4510cbbd2e1SMark F. Adams /* get 'cpcol_2_par_orig' */ 4520cbbd2e1SMark F. Adams for (kk=0,j=my0; kk<nloc; kk++,j++) { 4530cbbd2e1SMark F. Adams PetscScalar v = (PetscScalar)lid_parent_gid[kk]; 4540cbbd2e1SMark F. Adams ierr = VecSetValues(tempVec, 1, &j, &v, INSERT_VALUES);CHKERRQ(ierr); 4550cbbd2e1SMark F. Adams } 4560cbbd2e1SMark F. Adams ierr = VecAssemblyBegin(tempVec);CHKERRQ(ierr); 4570cbbd2e1SMark F. Adams ierr = VecAssemblyEnd(tempVec);CHKERRQ(ierr); 4580cbbd2e1SMark F. Adams ierr = VecDuplicate(mpimat_2->lvec, &ghost_par_orig2);CHKERRQ(ierr); 459806fa848SBarry Smith ierr = VecScatterBegin(mpimat_2->Mvctx,tempVec, ghost_par_orig2,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 460806fa848SBarry Smith ierr = VecScatterEnd(mpimat_2->Mvctx,tempVec, ghost_par_orig2,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 4610cbbd2e1SMark F. Adams ierr = VecGetArray(ghost_par_orig2, &cpcol_2_par_orig);CHKERRQ(ierr); 4620cbbd2e1SMark F. Adams 463c8b0795cSMark F. Adams ierr = VecDestroy(&tempVec);CHKERRQ(ierr); 464c8b0795cSMark F. Adams } /* ismpi */ 465c8b0795cSMark F. Adams 466c8b0795cSMark F. Adams /* doit */ 467c8b0795cSMark F. Adams for (lid=0; lid<nloc; lid++) { 468c8b0795cSMark F. Adams NState state = lid_state[lid]; 4690cbbd2e1SMark F. Adams if (IS_SELECTED(state)) { 4700cbbd2e1SMark F. Adams /* steal locals */ 471c8b0795cSMark F. Adams ii = matA_1->i; n = ii[lid+1] - ii[lid]; 472c8b0795cSMark F. Adams idx = matA_1->j + ii[lid]; 473c8b0795cSMark F. Adams for (j=0; j<n; j++) { 4740cbbd2e1SMark F. Adams PetscInt lidj = idx[j], sgid; 475c8b0795cSMark F. Adams NState statej = lid_state[lidj]; 4760cbbd2e1SMark F. Adams if (statej==DELETED && (sgid=(PetscInt)PetscRealPart(lid_parent_gid[lidj])) != lid+my0) { /* steal local */ 4770cbbd2e1SMark F. Adams lid_parent_gid[lidj] = (PetscScalar)(lid+my0); /* send this if sgid is not local */ 4780cbbd2e1SMark F. Adams if (sgid >= my0 && sgid < Iend) { /* I'm stealing this local from a local sgid */ 4790cbbd2e1SMark F. Adams PetscInt hav=0,slid=sgid-my0,gidj=lidj+my0; 4800298fd71SBarry Smith PetscCDPos pos,last=NULL; 481c8b0795cSMark F. Adams /* looking for local from local so id_llist_2 works */ 482e78576d6SMark F. Adams ierr = PetscCDGetHeadPos(aggs_2,slid,&pos);CHKERRQ(ierr); 483e78576d6SMark F. Adams while (pos) { 484e78576d6SMark F. Adams PetscInt gid; 485ffc955d6SMark F. Adams ierr = PetscLLNGetID(pos, &gid);CHKERRQ(ierr); 4860cbbd2e1SMark F. Adams if (gid == gidj) { 487*71959b99SBarry Smith if (!last) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"last cannot be null"); 48841b27cdeSMark F. Adams ierr = PetscCDRemoveNextNode(aggs_2, slid, last);CHKERRQ(ierr); 48941b27cdeSMark F. Adams ierr = PetscCDAppendNode(aggs_2, lid, pos);CHKERRQ(ierr); 4900cbbd2e1SMark F. Adams hav = 1; 491c8b0795cSMark F. Adams break; 492806fa848SBarry Smith } else last = pos; 493e78576d6SMark F. Adams 494e78576d6SMark F. Adams ierr = PetscCDGetNextPos(aggs_2,slid,&pos);CHKERRQ(ierr); 495c8b0795cSMark F. Adams } 496c8b0795cSMark F. Adams if (hav!=1) { 497*71959b99SBarry Smith if (!hav) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"failed to find adj in 'selected' lists - structurally unsymmetric matrix"); 498c666adbfSMark F. Adams SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"found node %d times???",hav); 499c8b0795cSMark F. Adams } 500806fa848SBarry Smith } else { /* I'm stealing this local, owned by a ghost */ 5012fa5cd67SKarl Rupp if (sgid != -1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Have un-symmetric graph (apparently). Use '-pc_gamg_sym_graph true' to symetrize the graph or '-pc_gamg_threshold 0.0' if the matrix is structurally symmetric."); 50241b27cdeSMark F. Adams ierr = PetscCDAppendID(aggs_2, lid, lidj+my0);CHKERRQ(ierr); 503c8b0795cSMark F. Adams } 504c8b0795cSMark F. Adams } 5050cbbd2e1SMark F. Adams } /* local neighbors */ 506806fa848SBarry Smith } else if (state == DELETED && lid_cprowID_1) { 5070cbbd2e1SMark F. Adams PetscInt sgidold = (PetscInt)PetscRealPart(lid_parent_gid[lid]); 508c8b0795cSMark F. Adams /* see if I have a selected ghost neighbor that will steal me */ 509c8b0795cSMark F. Adams if ((ix=lid_cprowID_1[lid]) != -1) { 510c8b0795cSMark F. Adams ii = matB_1->compressedrow.i; n = ii[ix+1] - ii[ix]; 511c8b0795cSMark F. Adams idx = matB_1->j + ii[ix]; 512c8b0795cSMark F. Adams for (j=0; j<n; j++) { 513c8b0795cSMark F. Adams PetscInt cpid = idx[j]; 514c8b0795cSMark F. Adams NState statej = (NState)PetscRealPart(cpcol_1_state[cpid]); 515c8b0795cSMark F. Adams if (IS_SELECTED(statej) && sgidold != (PetscInt)statej) { /* ghost will steal this, remove from my list */ 5160cbbd2e1SMark F. Adams lid_parent_gid[lid] = (PetscScalar)statej; /* send who selected */ 5170cbbd2e1SMark F. Adams if (sgidold>=my0 && sgidold<Iend) { /* this was mine */ 5180cbbd2e1SMark F. Adams PetscInt hav=0,oldslidj=sgidold-my0; 5190298fd71SBarry Smith PetscCDPos pos,last=NULL; 5200cbbd2e1SMark F. Adams /* remove from 'oldslidj' list */ 521e78576d6SMark F. Adams ierr = PetscCDGetHeadPos(aggs_2,oldslidj,&pos);CHKERRQ(ierr); 522e78576d6SMark F. Adams while (pos) { 523e78576d6SMark F. Adams PetscInt gid; 524ffc955d6SMark F. Adams ierr = PetscLLNGetID(pos, &gid);CHKERRQ(ierr); 5250cbbd2e1SMark F. Adams if (lid+my0 == gid) { 5260cbbd2e1SMark F. Adams /* id_llist_2[lastid] = id_llist_2[flid]; /\* remove lid from oldslidj list *\/ */ 527*71959b99SBarry Smith if (!last) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"last cannot be null"); 52841b27cdeSMark F. Adams ierr = PetscCDRemoveNextNode(aggs_2, oldslidj, last);CHKERRQ(ierr); 5290cbbd2e1SMark F. Adams /* ghost (PetscScalar)statej will add this later */ 5300cbbd2e1SMark F. Adams hav = 1; 531c8b0795cSMark F. Adams break; 532806fa848SBarry Smith } else last = pos; 533e78576d6SMark F. Adams 534e78576d6SMark F. Adams ierr = PetscCDGetNextPos(aggs_2,oldslidj,&pos);CHKERRQ(ierr); 535c8b0795cSMark F. Adams } 536c8b0795cSMark F. Adams if (hav!=1) { 537c666adbfSMark F. Adams if (hav==0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"failed to find adj in 'selected' lists - structurally unsymmetric matrix"); 538c666adbfSMark F. Adams SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"found node %d times???",hav); 539c8b0795cSMark F. Adams } 540806fa848SBarry Smith } else { 5410cbbd2e1SMark F. Adams /* ghosts remove this later */ 5420cbbd2e1SMark F. Adams } 543c8b0795cSMark F. Adams } 544c8b0795cSMark F. Adams } 545c8b0795cSMark F. Adams } 546c8b0795cSMark F. Adams } /* selected/deleted */ 547c8b0795cSMark F. Adams } /* node loop */ 548c8b0795cSMark F. Adams 549c8b0795cSMark F. Adams if (isMPI) { 5500cbbd2e1SMark F. Adams PetscScalar *cpcol_2_parent,*cpcol_2_gid; 5510cbbd2e1SMark F. Adams Vec tempVec,ghostgids2,ghostparents2; 5520cbbd2e1SMark F. Adams PetscInt cpid,nghost_2; 5530cbbd2e1SMark F. Adams GAMGHashTable gid_cpid; 554c8b0795cSMark F. Adams 5550cbbd2e1SMark F. Adams ierr = VecGetSize(mpimat_2->lvec, &nghost_2);CHKERRQ(ierr); 556c8b0795cSMark F. Adams ierr = MatGetVecs(Gmat_2, &tempVec, 0);CHKERRQ(ierr); 5570cbbd2e1SMark F. Adams 5580cbbd2e1SMark F. Adams /* get 'cpcol_2_parent' */ 559c8b0795cSMark F. Adams for (kk=0,j=my0; kk<nloc; kk++,j++) { 5600cbbd2e1SMark F. Adams ierr = VecSetValues(tempVec, 1, &j, &lid_parent_gid[kk], INSERT_VALUES);CHKERRQ(ierr); 561c8b0795cSMark F. Adams } 562c8b0795cSMark F. Adams ierr = VecAssemblyBegin(tempVec);CHKERRQ(ierr); 563c8b0795cSMark F. Adams ierr = VecAssemblyEnd(tempVec);CHKERRQ(ierr); 5640cbbd2e1SMark F. Adams ierr = VecDuplicate(mpimat_2->lvec, &ghostparents2);CHKERRQ(ierr); 565806fa848SBarry Smith ierr = VecScatterBegin(mpimat_2->Mvctx,tempVec, ghostparents2,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 566806fa848SBarry Smith ierr = VecScatterEnd(mpimat_2->Mvctx,tempVec, ghostparents2,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 5670cbbd2e1SMark F. Adams ierr = VecGetArray(ghostparents2, &cpcol_2_parent);CHKERRQ(ierr); 5680cbbd2e1SMark F. Adams 5690cbbd2e1SMark F. Adams /* get 'cpcol_2_gid' */ 5700cbbd2e1SMark F. Adams for (kk=0,j=my0; kk<nloc; kk++,j++) { 5710cbbd2e1SMark F. Adams PetscScalar v = (PetscScalar)j; 5720cbbd2e1SMark F. Adams ierr = VecSetValues(tempVec, 1, &j, &v, INSERT_VALUES);CHKERRQ(ierr); 5730cbbd2e1SMark F. Adams } 5740cbbd2e1SMark F. Adams ierr = VecAssemblyBegin(tempVec);CHKERRQ(ierr); 5750cbbd2e1SMark F. Adams ierr = VecAssemblyEnd(tempVec);CHKERRQ(ierr); 5760cbbd2e1SMark F. Adams ierr = VecDuplicate(mpimat_2->lvec, &ghostgids2);CHKERRQ(ierr); 577806fa848SBarry Smith ierr = VecScatterBegin(mpimat_2->Mvctx,tempVec, ghostgids2,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 578806fa848SBarry Smith ierr = VecScatterEnd(mpimat_2->Mvctx,tempVec, ghostgids2,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 5790cbbd2e1SMark F. Adams ierr = VecGetArray(ghostgids2, &cpcol_2_gid);CHKERRQ(ierr); 5800cbbd2e1SMark F. Adams 581c8b0795cSMark F. Adams ierr = VecDestroy(&tempVec);CHKERRQ(ierr); 582c8b0795cSMark F. Adams 5830cbbd2e1SMark F. Adams /* look for deleted ghosts and add to table */ 584f10ff945SMark F. Adams ierr = GAMGTableCreate(2*nghost_2+1, &gid_cpid);CHKERRQ(ierr); 5850cbbd2e1SMark F. Adams for (cpid = 0; cpid < nghost_2; cpid++) { 5860cbbd2e1SMark F. Adams NState state = (NState)PetscRealPart(cpcol_2_state[cpid]); 5870cbbd2e1SMark F. Adams if (state==DELETED) { 5880cbbd2e1SMark F. Adams PetscInt sgid_new = (PetscInt)PetscRealPart(cpcol_2_parent[cpid]); 5890cbbd2e1SMark F. Adams PetscInt sgid_old = (PetscInt)PetscRealPart(cpcol_2_par_orig[cpid]); 5900cbbd2e1SMark F. Adams if (sgid_old == -1 && sgid_new != -1) { 5910cbbd2e1SMark F. Adams PetscInt gid = (PetscInt)PetscRealPart(cpcol_2_gid[cpid]); 5920cbbd2e1SMark F. Adams ierr = GAMGTableAdd(&gid_cpid, gid, cpid);CHKERRQ(ierr); 5930cbbd2e1SMark F. Adams } 5940cbbd2e1SMark F. Adams } 5950cbbd2e1SMark F. Adams } 596c8b0795cSMark F. Adams 5970cbbd2e1SMark F. Adams /* look for deleted ghosts and see if they moved - remove it */ 598c8b0795cSMark F. Adams for (lid=0; lid<nloc; lid++) { 599c8b0795cSMark F. Adams NState state = lid_state[lid]; 600c8b0795cSMark F. Adams if (IS_SELECTED(state)) { 6010298fd71SBarry Smith PetscCDPos pos,last=NULL; 602c8b0795cSMark F. Adams /* look for deleted ghosts and see if they moved */ 603e78576d6SMark F. Adams ierr = PetscCDGetHeadPos(aggs_2,lid,&pos);CHKERRQ(ierr); 604e78576d6SMark F. Adams while (pos) { 605e78576d6SMark F. Adams PetscInt gid; 606ffc955d6SMark F. Adams ierr = PetscLLNGetID(pos, &gid);CHKERRQ(ierr); 607e78576d6SMark F. Adams 6080cbbd2e1SMark F. Adams if (gid < my0 || gid >= Iend) { 6090cbbd2e1SMark F. Adams ierr = GAMGTableFind(&gid_cpid, gid, &cpid);CHKERRQ(ierr); 6100cbbd2e1SMark F. Adams if (cpid != -1) { 6110cbbd2e1SMark F. Adams /* a moved ghost - */ 6120cbbd2e1SMark F. Adams /* id_llist_2[lastid] = id_llist_2[flid]; /\* remove 'flid' from list *\/ */ 61341b27cdeSMark F. Adams ierr = PetscCDRemoveNextNode(aggs_2, lid, last);CHKERRQ(ierr); 614806fa848SBarry Smith } else last = pos; 615806fa848SBarry Smith } else last = pos; 616e78576d6SMark F. Adams 617e78576d6SMark F. Adams ierr = PetscCDGetNextPos(aggs_2,lid,&pos);CHKERRQ(ierr); 618c8b0795cSMark F. Adams } /* loop over list of deleted */ 619c8b0795cSMark F. Adams } /* selected */ 620c8b0795cSMark F. Adams } 6210cbbd2e1SMark F. Adams ierr = GAMGTableDestroy(&gid_cpid);CHKERRQ(ierr); 622c8b0795cSMark F. Adams 6230cbbd2e1SMark F. Adams /* look at ghosts, see if they changed - and it */ 6240cbbd2e1SMark F. Adams for (cpid = 0; cpid < nghost_2; cpid++) { 6250cbbd2e1SMark F. Adams PetscInt sgid_new = (PetscInt)PetscRealPart(cpcol_2_parent[cpid]); 6260cbbd2e1SMark F. Adams if (sgid_new >= my0 && sgid_new < Iend) { /* this is mine */ 6270cbbd2e1SMark F. Adams PetscInt gid = (PetscInt)PetscRealPart(cpcol_2_gid[cpid]); 6280cbbd2e1SMark F. Adams PetscInt slid_new=sgid_new-my0,hav=0; 62941b27cdeSMark F. Adams PetscCDPos pos; 6300cbbd2e1SMark F. Adams /* search for this gid to see if I have it */ 631e78576d6SMark F. Adams ierr = PetscCDGetHeadPos(aggs_2,slid_new,&pos);CHKERRQ(ierr); 632e78576d6SMark F. Adams while (pos) { 633e78576d6SMark F. Adams PetscInt gidj; 634ffc955d6SMark F. Adams ierr = PetscLLNGetID(pos, &gidj);CHKERRQ(ierr); 635e78576d6SMark F. Adams ierr = PetscCDGetNextPos(aggs_2,slid_new,&pos);CHKERRQ(ierr); 636e78576d6SMark F. Adams 6370cbbd2e1SMark F. Adams if (gidj == gid) { hav = 1; break; } 638c8b0795cSMark F. Adams } 639c8b0795cSMark F. Adams if (hav != 1) { 640ffc955d6SMark F. Adams /* insert 'flidj' into head of llist */ 64141b27cdeSMark F. Adams ierr = PetscCDAppendID(aggs_2, slid_new, gid);CHKERRQ(ierr); 642c8b0795cSMark F. Adams } 643c8b0795cSMark F. Adams } 644c8b0795cSMark F. Adams } 645c8b0795cSMark F. Adams 6460cbbd2e1SMark F. Adams ierr = VecRestoreArray(mpimat_1->lvec, &cpcol_1_state);CHKERRQ(ierr); 6470cbbd2e1SMark F. Adams ierr = VecRestoreArray(mpimat_2->lvec, &cpcol_2_state);CHKERRQ(ierr); 6480cbbd2e1SMark F. Adams ierr = VecRestoreArray(ghostparents2, &cpcol_2_parent);CHKERRQ(ierr); 6490cbbd2e1SMark F. Adams ierr = VecRestoreArray(ghostgids2, &cpcol_2_gid);CHKERRQ(ierr); 650c8b0795cSMark F. Adams ierr = PetscFree(lid_cprowID_1);CHKERRQ(ierr); 6510cbbd2e1SMark F. Adams ierr = VecDestroy(&ghostgids2);CHKERRQ(ierr); 6520cbbd2e1SMark F. Adams ierr = VecDestroy(&ghostparents2);CHKERRQ(ierr); 6530cbbd2e1SMark F. Adams ierr = VecDestroy(&ghost_par_orig2);CHKERRQ(ierr); 654c8b0795cSMark F. Adams } 655c8b0795cSMark F. Adams 6560cbbd2e1SMark F. Adams ierr = PetscFree(lid_parent_gid);CHKERRQ(ierr); 657c8b0795cSMark F. Adams ierr = PetscFree(lid_state);CHKERRQ(ierr); 658c8b0795cSMark F. Adams PetscFunctionReturn(0); 659c8b0795cSMark F. Adams } 6602e68589bSMark F. Adams 6612e68589bSMark F. Adams /* -------------------------------------------------------------------------- */ 6622e68589bSMark F. Adams /* 663a2f3521dSMark F. Adams PCSetData_AGG - called if data is not set with PCSetCoordinates. 664a2f3521dSMark F. Adams Looks in Mat for near null space. 665a2f3521dSMark F. Adams Does not work for Stokes 6662e68589bSMark F. Adams 6672e68589bSMark F. Adams Input Parameter: 6682e68589bSMark F. Adams . pc - 669a2f3521dSMark F. Adams . a_A - matrix to get (near) null space out of. 6702e68589bSMark F. Adams */ 6712e68589bSMark F. Adams #undef __FUNCT__ 6722e68589bSMark F. Adams #define __FUNCT__ "PCSetData_AGG" 673b8cd405aSMark F. Adams PetscErrorCode PCSetData_AGG(PC pc, Mat a_A) 6742e68589bSMark F. Adams { 6752e68589bSMark F. Adams PetscErrorCode ierr; 676b8cd405aSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 677b8cd405aSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 678b8cd405aSMark F. Adams MatNullSpace mnull; 679b8cd405aSMark F. Adams 6802e68589bSMark F. Adams PetscFunctionBegin; 681b8cd405aSMark F. Adams ierr = MatGetNearNullSpace(a_A, &mnull);CHKERRQ(ierr); 682b8cd405aSMark F. Adams if (!mnull) { 683a2f3521dSMark F. Adams PetscInt bs,NN,MM; 6849d1b15c3SMark F. Adams ierr = MatGetBlockSize(a_A, &bs);CHKERRQ(ierr); 685*71959b99SBarry Smith ierr = MatGetLocalSize(a_A, &MM, &NN);CHKERRQ(ierr); 686*71959b99SBarry Smith if (MM % bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"MM %D must be divisible by bs %D",MM,bs); 6870298fd71SBarry Smith ierr = PCSetCoordinates_AGG(pc, bs, MM/bs, NULL);CHKERRQ(ierr); 688806fa848SBarry Smith } else { 689b8cd405aSMark F. Adams PetscReal *nullvec; 690b8cd405aSMark F. Adams PetscBool has_const; 691b8cd405aSMark F. Adams PetscInt i,j,mlocal,nvec,bs; 692b8cd405aSMark F. Adams const Vec *vecs; const PetscScalar *v; 6930298fd71SBarry Smith ierr = MatGetLocalSize(a_A,&mlocal,NULL);CHKERRQ(ierr); 694b8cd405aSMark F. Adams ierr = MatNullSpaceGetVecs(mnull, &has_const, &nvec, &vecs);CHKERRQ(ierr); 6958caf3d72SBarry Smith ierr = PetscMalloc((nvec+!!has_const)*mlocal*sizeof(*nullvec),&nullvec);CHKERRQ(ierr); 696b8cd405aSMark F. Adams if (has_const) for (i=0; i<mlocal; i++) nullvec[i] = 1.0; 697b8cd405aSMark F. Adams for (i=0; i<nvec; i++) { 698b8cd405aSMark F. Adams ierr = VecGetArrayRead(vecs[i],&v);CHKERRQ(ierr); 699b8cd405aSMark F. Adams for (j=0; j<mlocal; j++) nullvec[(i+!!has_const)*mlocal + j] = PetscRealPart(v[j]); 700b8cd405aSMark F. Adams ierr = VecRestoreArrayRead(vecs[i],&v);CHKERRQ(ierr); 701b8cd405aSMark F. Adams } 702b8cd405aSMark F. Adams pc_gamg->data = nullvec; 703b8cd405aSMark F. Adams pc_gamg->data_cell_cols = (nvec+!!has_const); 7042fa5cd67SKarl Rupp 705a2f3521dSMark F. Adams ierr = MatGetBlockSize(a_A, &bs);CHKERRQ(ierr); /* this does not work for Stokes */ 7062fa5cd67SKarl Rupp 707b8cd405aSMark F. Adams pc_gamg->data_cell_rows = bs; 708b8cd405aSMark F. Adams } 7092e68589bSMark F. Adams PetscFunctionReturn(0); 7102e68589bSMark F. Adams } 7112e68589bSMark F. Adams 7122e68589bSMark F. Adams /* -------------------------------------------------------------------------- */ 7132e68589bSMark F. Adams /* 7142e68589bSMark F. Adams formProl0 7152e68589bSMark F. Adams 7162e68589bSMark F. Adams Input Parameter: 7170cbbd2e1SMark F. Adams . agg_llists - list of arrays with aggregates 7182e68589bSMark F. Adams . bs - block size 7190cbbd2e1SMark F. Adams . nSAvec - column bs of new P 7200cbbd2e1SMark F. Adams . my0crs - global index of start of locals 7212e68589bSMark F. Adams . data_stride - bs*(nloc nodes + ghost nodes) 7222e68589bSMark F. Adams . data_in[data_stride*nSAvec] - local data on fine grid 7232e68589bSMark F. Adams . flid_fgid[data_stride/bs] - make local to global IDs, includes ghosts in 'locals_llist' 7242e68589bSMark F. Adams Output Parameter: 7252e68589bSMark F. Adams . a_data_out - in with fine grid data (w/ghosts), out with coarse grid data 7262e68589bSMark F. Adams . a_Prol - prolongation operator 7272e68589bSMark F. Adams */ 7282e68589bSMark F. Adams #undef __FUNCT__ 7292e68589bSMark F. Adams #define __FUNCT__ "formProl0" 7300cbbd2e1SMark F. Adams static PetscErrorCode formProl0(const PetscCoarsenData *agg_llists, /* list from selected vertices of aggregate unselected vertices */ 7310cbbd2e1SMark F. Adams const PetscInt bs, /* (row) block size */ 7320cbbd2e1SMark F. Adams const PetscInt nSAvec, /* column bs */ 7330cbbd2e1SMark F. Adams const PetscInt my0crs, /* global index of start of locals */ 7340cbbd2e1SMark F. Adams const PetscInt data_stride, /* (nloc+nghost)*bs */ 7350cbbd2e1SMark F. Adams PetscReal data_in[], /* [data_stride][nSAvec] */ 7360cbbd2e1SMark F. Adams const PetscInt flid_fgid[], /* [data_stride/bs] */ 7372e68589bSMark F. Adams PetscReal **a_data_out, 7381147fc2aSKarl Rupp Mat a_Prol) /* prolongation operator (output)*/ 7392e68589bSMark F. Adams { 7402e68589bSMark F. Adams PetscErrorCode ierr; 7410cbbd2e1SMark F. Adams PetscInt Istart,my0,Iend,nloc,clid,flid,aggID,kk,jj,ii,mm,ndone,nSelected,minsz,nghosts,out_data_stride; 7422e68589bSMark F. Adams MPI_Comm wcomm = ((PetscObject)a_Prol)->comm; 743c5df96a5SBarry Smith PetscMPIInt rank, size; 7442e68589bSMark F. Adams PetscReal *out_data; 74541b27cdeSMark F. Adams PetscCDPos pos; 7460cbbd2e1SMark F. Adams GAMGHashTable fgid_flid; 7470cbbd2e1SMark F. Adams 748797e13b7SMark F. Adams /* #define OUT_AGGS */ 749519f805aSKarl Rupp #if defined(OUT_AGGS) 7500298fd71SBarry Smith static PetscInt llev = 0; char fname[32]; FILE *file = NULL; PetscInt pM; 7519057884aSMark F. Adams #endif 7522e68589bSMark F. Adams 7532e68589bSMark F. Adams PetscFunctionBegin; 754c5df96a5SBarry Smith ierr = MPI_Comm_rank(wcomm,&rank);CHKERRQ(ierr); 755c5df96a5SBarry Smith ierr = MPI_Comm_size(wcomm,&size);CHKERRQ(ierr); 7562e68589bSMark F. Adams ierr = MatGetOwnershipRange(a_Prol, &Istart, &Iend);CHKERRQ(ierr); 757*71959b99SBarry Smith nloc = (Iend-Istart)/bs; my0 = Istart/bs; 758*71959b99SBarry Smith if ((Iend-Istart) % bs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Iend %D - Istart %d must be divisible by bs %D",Iend,Istart,bs); 7590cbbd2e1SMark F. Adams Iend /= bs; 7600cbbd2e1SMark F. Adams nghosts = data_stride/bs - nloc; 7612e68589bSMark F. Adams 762f10ff945SMark F. Adams ierr = GAMGTableCreate(2*nghosts+1, &fgid_flid);CHKERRQ(ierr); 7630cbbd2e1SMark F. Adams for (kk=0; kk<nghosts; kk++) { 7640cbbd2e1SMark F. Adams ierr = GAMGTableAdd(&fgid_flid, flid_fgid[nloc+kk], nloc+kk);CHKERRQ(ierr); 7652e68589bSMark F. Adams } 7662e68589bSMark F. Adams 767519f805aSKarl Rupp #if defined(OUT_AGGS) 768c5df96a5SBarry Smith sprintf(fname,"aggs_%d_%d.m",llev++,rank); 7692fa5cd67SKarl Rupp if (llev==1) file = fopen(fname,"w"); 7700cbbd2e1SMark F. Adams MatGetSize(a_Prol, &pM, &jj); 7710cbbd2e1SMark F. Adams #endif 7720cbbd2e1SMark F. Adams 7730cbbd2e1SMark F. Adams /* count selected -- same as number of cols of P */ 7740cbbd2e1SMark F. Adams for (nSelected=mm=0; mm<nloc; mm++) { 775e78576d6SMark F. Adams PetscBool ise; 776e78576d6SMark F. Adams ierr = PetscCDEmptyAt(agg_llists, mm, &ise);CHKERRQ(ierr); 777e78576d6SMark F. Adams if (!ise) nSelected++; 7780cbbd2e1SMark F. Adams } 7790cbbd2e1SMark F. Adams ierr = MatGetOwnershipRangeColumn(a_Prol, &ii, &jj);CHKERRQ(ierr); 780*71959b99SBarry Smith if ((ii/nSAvec) != my0crs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"ii %D /nSAvec %D != my0crs %D",ii,nSAvec,my0crs); 781*71959b99SBarry Smith if (nSelected != (jj-ii)/nSAvec) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_PLIB,"nSelected %D != (jj %D - ii %D)/nSAvec %D",nSelected,jj,ii,nSAvec); 7820cbbd2e1SMark F. Adams 7832e68589bSMark F. Adams /* aloc space for coarse point data (output) */ 7840cbbd2e1SMark F. Adams out_data_stride = nSelected*nSAvec; 7852fa5cd67SKarl Rupp 7860cbbd2e1SMark F. Adams ierr = PetscMalloc(out_data_stride*nSAvec*sizeof(PetscReal), &out_data);CHKERRQ(ierr); 7872fa5cd67SKarl Rupp for (ii=0;ii<out_data_stride*nSAvec;ii++) out_data[ii]=1.e300; 7880cbbd2e1SMark F. Adams *a_data_out = out_data; /* output - stride nSelected*nSAvec */ 7892e68589bSMark F. Adams 7902e68589bSMark F. Adams /* find points and set prolongation */ 791c8b0795cSMark F. Adams minsz = 100; 7922e68589bSMark F. Adams ndone = 0; 7930cbbd2e1SMark F. Adams for (mm = clid = 0; mm < nloc; mm++) { 794e78576d6SMark F. Adams ierr = PetscCDSizeAt(agg_llists, mm, &jj);CHKERRQ(ierr); 795e78576d6SMark F. Adams if (jj > 0) { 7960cbbd2e1SMark F. Adams const PetscInt lid = mm, cgid = my0crs + clid; 7970cbbd2e1SMark F. Adams PetscInt cids[100]; /* max bs */ 7980cbbd2e1SMark F. Adams PetscBLASInt asz =jj,M=asz*bs,N=nSAvec,INFO; 7992e68589bSMark F. Adams PetscBLASInt Mdata=M+((N-M>0) ? N-M : 0),LDA=Mdata,LWORK=N*bs; 8002e68589bSMark F. Adams PetscScalar *qqc,*qqr,*TAU,*WORK; 8012e68589bSMark F. Adams PetscInt *fids; 80265d7b583SSatish Balay PetscReal *data; 8030cbbd2e1SMark F. Adams /* count agg */ 8040cbbd2e1SMark F. Adams if (asz<minsz) minsz = asz; 8050cbbd2e1SMark F. Adams 8060cbbd2e1SMark F. Adams /* get block */ 8072e68589bSMark F. Adams ierr = PetscMalloc((Mdata*N)*sizeof(PetscScalar), &qqc);CHKERRQ(ierr); 8082e68589bSMark F. Adams ierr = PetscMalloc((M*N)*sizeof(PetscScalar), &qqr);CHKERRQ(ierr); 8092e68589bSMark F. Adams ierr = PetscMalloc(N*sizeof(PetscScalar), &TAU);CHKERRQ(ierr); 8102e68589bSMark F. Adams ierr = PetscMalloc(LWORK*sizeof(PetscScalar), &WORK);CHKERRQ(ierr); 8112e68589bSMark F. Adams ierr = PetscMalloc(M*sizeof(PetscInt), &fids);CHKERRQ(ierr); 8122e68589bSMark F. Adams 8132e68589bSMark F. Adams aggID = 0; 814e78576d6SMark F. Adams ierr = PetscCDGetHeadPos(agg_llists,lid,&pos);CHKERRQ(ierr); 815e78576d6SMark F. Adams while (pos) { 816e78576d6SMark F. Adams PetscInt gid1; 817ffc955d6SMark F. Adams ierr = PetscLLNGetID(pos, &gid1);CHKERRQ(ierr); 818e78576d6SMark F. Adams ierr = PetscCDGetNextPos(agg_llists,lid,&pos);CHKERRQ(ierr); 819e78576d6SMark F. Adams 8200cbbd2e1SMark F. Adams if (gid1 >= my0 && gid1 < Iend) flid = gid1 - my0; 8210cbbd2e1SMark F. Adams else { 8220cbbd2e1SMark F. Adams ierr = GAMGTableFind(&fgid_flid, gid1, &flid);CHKERRQ(ierr); 823*71959b99SBarry Smith if (flid < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cannot find gid1 in table"); 8240cbbd2e1SMark F. Adams } 8252e68589bSMark F. Adams /* copy in B_i matrix - column oriented */ 82665d7b583SSatish Balay data = &data_in[flid*bs]; 8272e68589bSMark F. Adams for (kk = ii = 0; ii < bs; ii++) { 8282e68589bSMark F. Adams for (jj = 0; jj < N; jj++) { 8290cbbd2e1SMark F. Adams PetscReal d = data[jj*data_stride + ii]; 8300cbbd2e1SMark F. Adams qqc[jj*Mdata + aggID*bs + ii] = d; 8312e68589bSMark F. Adams } 8322e68589bSMark F. Adams } 833519f805aSKarl Rupp #if defined(OUT_AGGS) 834b2a4f308SMark F. Adams if (llev==1) { 8359057884aSMark F. Adams char str[] = "plot(%e,%e,'r*'), hold on,\n", col[] = "rgbkmc", sim[] = "*os+h>d<vx^"; 8360cbbd2e1SMark F. Adams PetscInt MM,pi,pj; 837c5df96a5SBarry Smith str[12] = col[(clid+17*rank)%6]; str[13] = sim[(clid+17*rank)%11]; 838f7620de1SMatthew G Knepley MM = (PetscInt)(PetscSqrtReal((PetscReal)pM)); 8390cbbd2e1SMark F. Adams pj = gid1/MM; pi = gid1%MM; 840b2a4f308SMark F. Adams fprintf(file,str,(double)pi,(double)pj); 841b2a4f308SMark F. Adams /* fprintf(file,str,data[2*data_stride+1],-data[2*data_stride]); */ 8429057884aSMark F. Adams } 8439057884aSMark F. Adams #endif 8442e68589bSMark F. Adams /* set fine IDs */ 8452e68589bSMark F. Adams for (kk=0; kk<bs; kk++) fids[aggID*bs + kk] = flid_fgid[flid]*bs + kk; 8462e68589bSMark F. Adams 8472e68589bSMark F. Adams aggID++; 8480cbbd2e1SMark F. Adams } 8492e68589bSMark F. Adams 8502e68589bSMark F. Adams /* pad with zeros */ 8512e68589bSMark F. Adams for (ii = asz*bs; ii < Mdata; ii++) { 8522e68589bSMark F. Adams for (jj = 0; jj < N; jj++, kk++) { 8532e68589bSMark F. Adams qqc[jj*Mdata + ii] = .0; 8542e68589bSMark F. Adams } 8552e68589bSMark F. Adams } 8562e68589bSMark F. Adams 8572e68589bSMark F. Adams ndone += aggID; 8582e68589bSMark F. Adams /* QR */ 85984df3f90SSatish Balay ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 860f75e95b9SBarry Smith PetscStackCall("LAPACKgeqrf",LAPACKgeqrf_(&Mdata, &N, qqc, &LDA, TAU, WORK, &LWORK, &INFO)); 86184df3f90SSatish Balay ierr = PetscFPTrapPop();CHKERRQ(ierr); 862d23427c4SJed Brown if (INFO != 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"xGEQRF error"); 8632e68589bSMark F. Adams /* get R - column oriented - output B_{i+1} */ 8642e68589bSMark F. Adams { 8652e68589bSMark F. Adams PetscReal *data = &out_data[clid*nSAvec]; 8662e68589bSMark F. Adams for (jj = 0; jj < nSAvec; jj++) { 8672e68589bSMark F. Adams for (ii = 0; ii < nSAvec; ii++) { 868*71959b99SBarry Smith if (data[jj*out_data_stride + ii] != 1.e300) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"data[jj*out_data_stride + ii] != 1.e300"); 8690cbbd2e1SMark F. Adams if (ii <= jj) data[jj*out_data_stride + ii] = PetscRealPart(qqc[jj*Mdata + ii]); 8700cbbd2e1SMark F. Adams else data[jj*out_data_stride + ii] = 0.; 8712e68589bSMark F. Adams } 8722e68589bSMark F. Adams } 8732e68589bSMark F. Adams } 8742e68589bSMark F. Adams 8752e68589bSMark F. Adams /* get Q - row oriented */ 876f75e95b9SBarry Smith PetscStackCall("LAPACKungqr",LAPACKungqr_(&Mdata, &N, &N, qqc, &LDA, TAU, WORK, &LWORK, &INFO)); 877c666adbfSMark F. Adams if (INFO != 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"xORGQR error arg %d",-INFO); 8782e68589bSMark F. Adams 8792e68589bSMark F. Adams for (ii = 0; ii < M; ii++) { 8802e68589bSMark F. Adams for (jj = 0; jj < N; jj++) { 8812e68589bSMark F. Adams qqr[N*ii + jj] = qqc[jj*Mdata + ii]; 8822e68589bSMark F. Adams } 8832e68589bSMark F. Adams } 8842e68589bSMark F. Adams 8852e68589bSMark F. Adams /* add diagonal block of P0 */ 886c8b0795cSMark F. Adams for (kk=0; kk<N; kk++) { 887c8b0795cSMark F. Adams cids[kk] = N*cgid + kk; /* global col IDs in P0 */ 888c8b0795cSMark F. Adams } 8892e68589bSMark F. Adams ierr = MatSetValues(a_Prol,M,fids,N,cids,qqr,INSERT_VALUES);CHKERRQ(ierr); 8902e68589bSMark F. Adams 8912e68589bSMark F. Adams ierr = PetscFree(qqc);CHKERRQ(ierr); 8922e68589bSMark F. Adams ierr = PetscFree(qqr);CHKERRQ(ierr); 8932e68589bSMark F. Adams ierr = PetscFree(TAU);CHKERRQ(ierr); 8942e68589bSMark F. Adams ierr = PetscFree(WORK);CHKERRQ(ierr); 8952e68589bSMark F. Adams ierr = PetscFree(fids);CHKERRQ(ierr); 896b43b03e9SMark F. Adams clid++; 8970cbbd2e1SMark F. Adams } /* coarse agg */ 8980cbbd2e1SMark F. Adams } /* for all fine nodes */ 8990cbbd2e1SMark F. Adams ierr = MatAssemblyBegin(a_Prol,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9000cbbd2e1SMark F. Adams ierr = MatAssemblyEnd(a_Prol,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9012e68589bSMark F. Adams 902c8b0795cSMark F. Adams /* ierr = MPI_Allreduce(&ndone, &ii, 1, MPIU_INT, MPIU_SUM, wcomm); */ 9032e68589bSMark F. Adams /* MatGetSize(a_Prol, &kk, &jj); */ 904c8b0795cSMark F. Adams /* ierr = MPI_Allreduce(&minsz, &jj, 1, MPIU_INT, MPIU_MIN, wcomm); */ 905c5df96a5SBarry Smith /* PetscPrintf(wcomm," **** [%d]%s %d total done, %d nodes (%d local done), min agg. size = %d\n",rank,__FUNCT__,ii,kk/bs,ndone,jj); */ 9062e68589bSMark F. Adams 907519f805aSKarl Rupp #if defined(OUT_AGGS) 908b2a4f308SMark F. Adams if (llev==1) fclose(file); 9099057884aSMark F. Adams #endif 9100cbbd2e1SMark F. Adams ierr = GAMGTableDestroy(&fgid_flid);CHKERRQ(ierr); 9112e68589bSMark F. Adams PetscFunctionReturn(0); 9122e68589bSMark F. Adams } 9132e68589bSMark F. Adams 9142e68589bSMark F. Adams /* -------------------------------------------------------------------------- */ 9152e68589bSMark F. Adams /* 916c8b0795cSMark F. Adams PCGAMGgraph_AGG 9172e68589bSMark F. Adams 9182e68589bSMark F. Adams Input Parameter: 9192e68589bSMark F. Adams . pc - this 9202e68589bSMark F. Adams . Amat - matrix on this fine level 9212e68589bSMark F. Adams Output Parameter: 922c8b0795cSMark F. Adams . a_Gmat - 9232e68589bSMark F. Adams */ 9242e68589bSMark F. Adams #undef __FUNCT__ 925c8b0795cSMark F. Adams #define __FUNCT__ "PCGAMGgraph_AGG" 9262fa5cd67SKarl Rupp PetscErrorCode PCGAMGgraph_AGG(PC pc,const Mat Amat,Mat *a_Gmat) 927c8b0795cSMark F. Adams { 928c8b0795cSMark F. Adams PetscErrorCode ierr; 929c8b0795cSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 930c8b0795cSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 931c8b0795cSMark F. Adams const PetscInt verbose = pc_gamg->verbose; 932c8b0795cSMark F. Adams const PetscReal vfilter = pc_gamg->threshold; 933c8b0795cSMark F. Adams PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx; 934c5df96a5SBarry Smith PetscMPIInt rank,size; 935e0940f08SMark F. Adams Mat Gmat; 936c8b0795cSMark F. Adams MPI_Comm wcomm = ((PetscObject)Amat)->comm; 93767744fedSMark F. Adams PetscBool /* set,flg , */ symm; 938c8b0795cSMark F. Adams 939c8b0795cSMark F. Adams PetscFunctionBegin; 9400cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG 9410cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(PC_GAMGGgraph_AGG,0,0,0,0);CHKERRQ(ierr); 9420cbbd2e1SMark F. Adams #endif 943c5df96a5SBarry Smith ierr = MPI_Comm_rank(wcomm, &rank);CHKERRQ(ierr); 944c5df96a5SBarry Smith ierr = MPI_Comm_size(wcomm, &size);CHKERRQ(ierr); 945c8b0795cSMark F. Adams 94667744fedSMark F. Adams /* ierr = MatIsSymmetricKnown(Amat, &set, &flg);CHKERRQ(ierr); || !(set && flg) -- this causes lot of symm calls */ 947c666adbfSMark F. Adams symm = (PetscBool)(pc_gamg_agg->sym_graph); /* && !pc_gamg_agg->square_graph; */ 9480cbbd2e1SMark F. Adams 9492d7fac45SMark F. Adams ierr = PCGAMGCreateGraph(Amat, &Gmat);CHKERRQ(ierr); 9502d7fac45SMark F. Adams ierr = PCGAMGFilterGraph(&Gmat, vfilter, symm, verbose);CHKERRQ(ierr); 951c8b0795cSMark F. Adams 952e0940f08SMark F. Adams *a_Gmat = Gmat; 953c8b0795cSMark F. Adams 9540cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG 9550cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(PC_GAMGGgraph_AGG,0,0,0,0);CHKERRQ(ierr); 9560cbbd2e1SMark F. Adams #endif 957c8b0795cSMark F. Adams PetscFunctionReturn(0); 958c8b0795cSMark F. Adams } 959c8b0795cSMark F. Adams 960c8b0795cSMark F. Adams /* -------------------------------------------------------------------------- */ 961c8b0795cSMark F. Adams /* 962b43b03e9SMark F. Adams PCGAMGCoarsen_AGG 963c8b0795cSMark F. Adams 964c8b0795cSMark F. Adams Input Parameter: 965e0940f08SMark F. Adams . a_pc - this 966e0940f08SMark F. Adams Input/Output Parameter: 9670cbbd2e1SMark F. Adams . a_Gmat1 - graph on this fine level - coarsening can change this (squares it) 968c8b0795cSMark F. Adams Output Parameter: 9690cbbd2e1SMark F. Adams . agg_lists - list of aggregates 970c8b0795cSMark F. Adams */ 971c8b0795cSMark F. Adams #undef __FUNCT__ 972b43b03e9SMark F. Adams #define __FUNCT__ "PCGAMGCoarsen_AGG" 9732fa5cd67SKarl Rupp PetscErrorCode PCGAMGCoarsen_AGG(PC a_pc,Mat *a_Gmat1,PetscCoarsenData **agg_lists) 974c8b0795cSMark F. Adams { 975c8b0795cSMark F. Adams PetscErrorCode ierr; 976e0940f08SMark F. Adams PC_MG *mg = (PC_MG*)a_pc->data; 977c8b0795cSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 978c8b0795cSMark F. Adams PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx; 9790cbbd2e1SMark F. Adams Mat mat,Gmat2, Gmat1 = *a_Gmat1; /* squared graph */ 9809f3f12c8SMark F. Adams const PetscInt verbose = pc_gamg->verbose; 9810cbbd2e1SMark F. Adams IS perm; 982c8b0795cSMark F. Adams PetscInt Ii,nloc,bs,n,m; 983c8b0795cSMark F. Adams PetscInt *permute; 984c8b0795cSMark F. Adams PetscBool *bIndexSet; 985b43b03e9SMark F. Adams MatCoarsen crs; 986e0940f08SMark F. Adams MPI_Comm wcomm = ((PetscObject)Gmat1)->comm; 987c5df96a5SBarry Smith PetscMPIInt rank,size; 988c8b0795cSMark F. Adams 989c8b0795cSMark F. Adams PetscFunctionBegin; 9900cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG 9910cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(PC_GAMGCoarsen_AGG,0,0,0,0);CHKERRQ(ierr); 9920cbbd2e1SMark F. Adams #endif 993c5df96a5SBarry Smith ierr = MPI_Comm_rank(wcomm, &rank);CHKERRQ(ierr); 994c5df96a5SBarry Smith ierr = MPI_Comm_size(wcomm, &size);CHKERRQ(ierr); 995e0940f08SMark F. Adams ierr = MatGetLocalSize(Gmat1, &n, &m);CHKERRQ(ierr); 996*71959b99SBarry Smith ierr = MatGetBlockSize(Gmat1, &bs);CHKERRQ(ierr); 997*71959b99SBarry Smith if (bs != 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"bs %D must be 1",bs); 998c8b0795cSMark F. Adams nloc = n/bs; 999c8b0795cSMark F. Adams 1000e0940f08SMark F. Adams if (pc_gamg_agg->square_graph) { 10012fa5cd67SKarl Rupp if (verbose > 1) PetscPrintf(wcomm,"[%d]%s square graph\n",rank,__FUNCT__); 1002878e152fSMark F. Adams /* ierr = MatMatTransposeMult(Gmat1, Gmat1, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Gmat2); */ 1003806fa848SBarry Smith ierr = MatTransposeMatMult(Gmat1, Gmat1, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Gmat2);CHKERRQ(ierr); 10049f3f12c8SMark F. Adams if (verbose > 2) { 1005c5df96a5SBarry Smith ierr = PetscPrintf(wcomm,"[%d]%s square graph done\n",rank,__FUNCT__);CHKERRQ(ierr); 1006f10ff945SMark F. Adams /* check for symetry */ 1007f10ff945SMark F. Adams if (verbose > 4) { 1008f10ff945SMark F. Adams 1009f10ff945SMark F. Adams } 10109f3f12c8SMark F. Adams } 1011806fa848SBarry Smith } else Gmat2 = Gmat1; 1012c8b0795cSMark F. Adams 1013c8b0795cSMark F. Adams /* get MIS aggs */ 1014c8b0795cSMark F. Adams /* randomize */ 1015c8b0795cSMark F. Adams ierr = PetscMalloc(nloc*sizeof(PetscInt), &permute);CHKERRQ(ierr); 1016c8b0795cSMark F. Adams ierr = PetscMalloc(nloc*sizeof(PetscBool), &bIndexSet);CHKERRQ(ierr); 1017c8b0795cSMark F. Adams for (Ii = 0; Ii < nloc; Ii++) { 1018c8b0795cSMark F. Adams bIndexSet[Ii] = PETSC_FALSE; 1019c8b0795cSMark F. Adams permute[Ii] = Ii; 1020c8b0795cSMark F. Adams } 1021c8b0795cSMark F. Adams srand(1); /* make deterministic */ 1022c8b0795cSMark F. Adams for (Ii = 0; Ii < nloc; Ii++) { 1023c8b0795cSMark F. Adams PetscInt iSwapIndex = rand()%nloc; 1024c8b0795cSMark F. Adams if (!bIndexSet[iSwapIndex] && iSwapIndex != Ii) { 1025c8b0795cSMark F. Adams PetscInt iTemp = permute[iSwapIndex]; 1026c8b0795cSMark F. Adams permute[iSwapIndex] = permute[Ii]; 1027c8b0795cSMark F. Adams permute[Ii] = iTemp; 1028c8b0795cSMark F. Adams bIndexSet[iSwapIndex] = PETSC_TRUE; 1029c8b0795cSMark F. Adams } 1030c8b0795cSMark F. Adams } 1031c8b0795cSMark F. Adams ierr = PetscFree(bIndexSet);CHKERRQ(ierr); 1032c8b0795cSMark F. Adams 10332fa5cd67SKarl Rupp if (verbose > 1) PetscPrintf(wcomm,"[%d]%s coarsen graph\n",rank,__FUNCT__); 10349f3f12c8SMark F. Adams 1035806fa848SBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF, nloc, permute, PETSC_USE_POINTER, &perm);CHKERRQ(ierr); 10360cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 10370cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(petsc_gamg_setup_events[SET4],0,0,0,0);CHKERRQ(ierr); 1038b43b03e9SMark F. Adams #endif 1039b43b03e9SMark F. Adams ierr = MatCoarsenCreate(wcomm, &crs);CHKERRQ(ierr); 10409057884aSMark F. Adams /* ierr = MatCoarsenSetType(crs, MATCOARSENMIS);CHKERRQ(ierr); */ 10419057884aSMark F. Adams ierr = MatCoarsenSetFromOptions(crs);CHKERRQ(ierr); 1042b43b03e9SMark F. Adams ierr = MatCoarsenSetGreedyOrdering(crs, perm);CHKERRQ(ierr); 1043b43b03e9SMark F. Adams ierr = MatCoarsenSetAdjacency(crs, Gmat2);CHKERRQ(ierr); 1044b43b03e9SMark F. Adams ierr = MatCoarsenSetVerbose(crs, pc_gamg->verbose);CHKERRQ(ierr); 1045b43b03e9SMark F. Adams ierr = MatCoarsenSetStrictAggs(crs, PETSC_TRUE);CHKERRQ(ierr); 1046b43b03e9SMark F. Adams ierr = MatCoarsenApply(crs);CHKERRQ(ierr); 10470cbbd2e1SMark F. Adams ierr = MatCoarsenGetData(crs, agg_lists);CHKERRQ(ierr); /* output */ 1048b43b03e9SMark F. Adams ierr = MatCoarsenDestroy(&crs);CHKERRQ(ierr); 1049b43b03e9SMark F. Adams 1050c8b0795cSMark F. Adams ierr = ISDestroy(&perm);CHKERRQ(ierr); 1051c8b0795cSMark F. Adams ierr = PetscFree(permute);CHKERRQ(ierr); 10520cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 10530cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(petsc_gamg_setup_events[SET4],0,0,0,0);CHKERRQ(ierr); 1054b43b03e9SMark F. Adams #endif 10552fa5cd67SKarl Rupp if (verbose > 2) PetscPrintf(wcomm,"[%d]%s coarsen graph done\n",rank,__FUNCT__); 10569f3f12c8SMark F. Adams 1057c8b0795cSMark F. Adams /* smooth aggs */ 1058e0940f08SMark F. Adams if (Gmat2 != Gmat1) { 10590cbbd2e1SMark F. Adams const PetscCoarsenData *llist = *agg_lists; 10600cbbd2e1SMark F. Adams ierr = smoothAggs(Gmat2, Gmat1, *agg_lists);CHKERRQ(ierr); 1061c8b0795cSMark F. Adams ierr = MatDestroy(&Gmat1);CHKERRQ(ierr); 1062e0940f08SMark F. Adams *a_Gmat1 = Gmat2; /* output */ 106341b27cdeSMark F. Adams ierr = PetscCDGetMat(llist, &mat);CHKERRQ(ierr); 10640cbbd2e1SMark F. Adams if (mat) SETERRQ(wcomm,PETSC_ERR_ARG_WRONG, "Auxilary matrix with squared graph????"); 1065806fa848SBarry Smith } else { 10660cbbd2e1SMark F. Adams const PetscCoarsenData *llist = *agg_lists; 1067f10ff945SMark F. Adams /* see if we have a matrix that takes precedence (returned from MatCoarsenAppply) */ 106841b27cdeSMark F. Adams ierr = PetscCDGetMat(llist, &mat);CHKERRQ(ierr); 10690cbbd2e1SMark F. Adams if (mat) { 10700cbbd2e1SMark F. Adams ierr = MatDestroy(&Gmat1);CHKERRQ(ierr); 10710cbbd2e1SMark F. Adams *a_Gmat1 = mat; /* output */ 10720cbbd2e1SMark F. Adams } 10730cbbd2e1SMark F. Adams } 10740cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG 10750cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(PC_GAMGCoarsen_AGG,0,0,0,0);CHKERRQ(ierr); 10760cbbd2e1SMark F. Adams #endif 10772fa5cd67SKarl Rupp if (verbose > 2) PetscPrintf(wcomm,"[%d]%s PCGAMGCoarsen_AGG done\n",rank,__FUNCT__); 1078c8b0795cSMark F. Adams PetscFunctionReturn(0); 1079c8b0795cSMark F. Adams } 1080c8b0795cSMark F. Adams 1081c8b0795cSMark F. Adams /* -------------------------------------------------------------------------- */ 1082c8b0795cSMark F. Adams /* 10830cbbd2e1SMark F. Adams PCGAMGProlongator_AGG 1084c8b0795cSMark F. Adams 1085c8b0795cSMark F. Adams Input Parameter: 1086c8b0795cSMark F. Adams . pc - this 1087c8b0795cSMark F. Adams . Amat - matrix on this fine level 1088c8b0795cSMark F. Adams . Graph - used to get ghost data for nodes in 10890cbbd2e1SMark F. Adams . agg_lists - list of aggregates 1090c8b0795cSMark F. Adams Output Parameter: 1091c8b0795cSMark F. Adams . a_P_out - prolongation operator to the next level 1092c8b0795cSMark F. Adams */ 1093c8b0795cSMark F. Adams #undef __FUNCT__ 10940cbbd2e1SMark F. Adams #define __FUNCT__ "PCGAMGProlongator_AGG" 10952fa5cd67SKarl Rupp PetscErrorCode PCGAMGProlongator_AGG(PC pc,const Mat Amat,const Mat Gmat,PetscCoarsenData *agg_lists,Mat *a_P_out) 10962e68589bSMark F. Adams { 10972e68589bSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 10982e68589bSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 10992e68589bSMark F. Adams const PetscInt verbose = pc_gamg->verbose; 1100c8b0795cSMark F. Adams const PetscInt data_cols = pc_gamg->data_cell_cols; 11012e68589bSMark F. Adams PetscErrorCode ierr; 1102c8b0795cSMark F. Adams PetscInt Istart,Iend,nloc,ii,jj,kk,my0,nLocalSelected,bs; 1103c8b0795cSMark F. Adams Mat Prol; 1104c5df96a5SBarry Smith PetscMPIInt rank, size; 11052e68589bSMark F. Adams MPI_Comm wcomm = ((PetscObject)Amat)->comm; 11060cbbd2e1SMark F. Adams const PetscInt col_bs = data_cols; 1107c8b0795cSMark F. Adams PetscReal *data_w_ghost; 1108c8b0795cSMark F. Adams PetscInt myCrs0, nbnodes=0, *flid_fgid; 11092e68589bSMark F. Adams 11102e68589bSMark F. Adams PetscFunctionBegin; 11110cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG 11120cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(PC_GAMGProlongator_AGG,0,0,0,0);CHKERRQ(ierr); 11130cbbd2e1SMark F. Adams #endif 1114c5df96a5SBarry Smith ierr = MPI_Comm_rank(wcomm, &rank);CHKERRQ(ierr); 1115c5df96a5SBarry Smith ierr = MPI_Comm_size(wcomm, &size);CHKERRQ(ierr); 11162e68589bSMark F. Adams ierr = MatGetOwnershipRange(Amat, &Istart, &Iend);CHKERRQ(ierr); 1117c8b0795cSMark F. Adams ierr = MatGetBlockSize(Amat, &bs);CHKERRQ(ierr); 1118*71959b99SBarry Smith nloc = (Iend-Istart)/bs; my0 = Istart/bs; 1119*71959b99SBarry Smith if ((Iend-Istart) % bs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"(Iend %D - Istart %D) not divisible by bs %D",Iend,Istart,bs); 11202e68589bSMark F. Adams 11212e68589bSMark F. Adams /* get 'nLocalSelected' */ 11220cbbd2e1SMark F. Adams for (ii=0, nLocalSelected = 0; ii < nloc; ii++) { 1123e78576d6SMark F. Adams PetscBool ise; 11240cbbd2e1SMark F. Adams /* filter out singletons 0 or 1? */ 1125e78576d6SMark F. Adams ierr = PetscCDEmptyAt(agg_lists, ii, &ise);CHKERRQ(ierr); 1126e78576d6SMark F. Adams if (!ise) nLocalSelected++; 11272e68589bSMark F. Adams } 11282e68589bSMark F. Adams 11292e68589bSMark F. Adams /* create prolongator, create P matrix */ 1130a2f3521dSMark F. Adams ierr = MatCreate(wcomm, &Prol);CHKERRQ(ierr); 1131806fa848SBarry Smith ierr = MatSetSizes(Prol,nloc*bs,nLocalSelected*col_bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 1132a2f3521dSMark F. Adams ierr = MatSetBlockSizes(Prol, bs, col_bs);CHKERRQ(ierr); 1133a2f3521dSMark F. Adams ierr = MatSetType(Prol, MATAIJ);CHKERRQ(ierr); 11340298fd71SBarry Smith ierr = MatSeqAIJSetPreallocation(Prol, data_cols, NULL);CHKERRQ(ierr); 11350298fd71SBarry Smith ierr = MatMPIAIJSetPreallocation(Prol,data_cols, NULL,data_cols, NULL);CHKERRQ(ierr); 1136a2f3521dSMark F. Adams /* nloc*bs, nLocalSelected*col_bs, */ 1137a2f3521dSMark F. Adams /* PETSC_DETERMINE, PETSC_DETERMINE, */ 11380298fd71SBarry Smith /* data_cols, NULL, data_cols, NULL, */ 1139a2f3521dSMark F. Adams /* &Prol); */ 11402e68589bSMark F. Adams 11412e68589bSMark F. Adams /* can get all points "removed" */ 1142c8b0795cSMark F. Adams ierr = MatGetSize(Prol, &kk, &ii);CHKERRQ(ierr); 1143c8b0795cSMark F. Adams if (ii==0) { 11442fa5cd67SKarl Rupp if (verbose > 0) PetscPrintf(wcomm,"[%d]%s no selected points on coarse grid\n",rank,__FUNCT__); 11452e68589bSMark F. Adams ierr = MatDestroy(&Prol);CHKERRQ(ierr); 11460298fd71SBarry Smith *a_P_out = NULL; /* out */ 11472e68589bSMark F. Adams PetscFunctionReturn(0); 11482e68589bSMark F. Adams } 11492fa5cd67SKarl Rupp if (verbose > 0) PetscPrintf(wcomm,"\t\t[%d]%s New grid %d nodes\n",rank,__FUNCT__,ii/col_bs); 1150c8b0795cSMark F. Adams ierr = MatGetOwnershipRangeColumn(Prol, &myCrs0, &kk);CHKERRQ(ierr); 11510cbbd2e1SMark F. Adams 1152*71959b99SBarry Smith if ((kk-myCrs0) % col_bs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"(kk %D -myCrs0 %D) not divisible by col_bs %D",kk,myCrs0,col_bs); 1153c8b0795cSMark F. Adams myCrs0 = myCrs0/col_bs; 1154*71959b99SBarry Smith if ((kk/col_bs-myCrs0) != nLocalSelected) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_PLIB,"(kk %D/col_bs %D - myCrs0 %D) != nLocalSelected %D)",kk,col_bs,myCrs0,nLocalSelected); 11552e68589bSMark F. Adams 11562e68589bSMark F. Adams /* create global vector of data in 'data_w_ghost' */ 11570cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 11580cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(petsc_gamg_setup_events[SET7],0,0,0,0);CHKERRQ(ierr); 11592e68589bSMark F. Adams #endif 1160c5df96a5SBarry Smith if (size > 1) { /* */ 11612e68589bSMark F. Adams PetscReal *tmp_gdata,*tmp_ldata,*tp2; 11622e68589bSMark F. Adams ierr = PetscMalloc(nloc*sizeof(PetscReal), &tmp_ldata);CHKERRQ(ierr); 11632e68589bSMark F. Adams for (jj = 0; jj < data_cols; jj++) { 1164c8b0795cSMark F. Adams for (kk = 0; kk < bs; kk++) { 1165a2f3521dSMark F. Adams PetscInt ii,stride; 1166c8b0795cSMark F. Adams const PetscReal *tp = pc_gamg->data + jj*bs*nloc + kk; 11672fa5cd67SKarl Rupp for (ii = 0; ii < nloc; ii++, tp += bs) tmp_ldata[ii] = *tp; 11682fa5cd67SKarl Rupp 1169806fa848SBarry Smith ierr = PCGAMGGetDataWithGhosts(Gmat, 1, tmp_ldata, &stride, &tmp_gdata);CHKERRQ(ierr); 1170a2f3521dSMark F. Adams 11712e68589bSMark F. Adams if (jj==0 && kk==0) { /* now I know how many todal nodes - allocate */ 1172a2f3521dSMark F. Adams ierr = PetscMalloc(stride*bs*data_cols*sizeof(PetscReal), &data_w_ghost);CHKERRQ(ierr); 1173a2f3521dSMark F. Adams nbnodes = bs*stride; 11742e68589bSMark F. Adams } 1175a2f3521dSMark F. Adams tp2 = data_w_ghost + jj*bs*stride + kk; 11762fa5cd67SKarl Rupp for (ii = 0; ii < stride; ii++, tp2 += bs) *tp2 = tmp_gdata[ii]; 11772e68589bSMark F. Adams ierr = PetscFree(tmp_gdata);CHKERRQ(ierr); 11782e68589bSMark F. Adams } 11792e68589bSMark F. Adams } 11802e68589bSMark F. Adams ierr = PetscFree(tmp_ldata);CHKERRQ(ierr); 1181806fa848SBarry Smith } else { 1182c8b0795cSMark F. Adams nbnodes = bs*nloc; 1183c8b0795cSMark F. Adams data_w_ghost = (PetscReal*)pc_gamg->data; 11842e68589bSMark F. Adams } 11852e68589bSMark F. Adams 11862e68589bSMark F. Adams /* get P0 */ 1187c5df96a5SBarry Smith if (size > 1) { 11882e68589bSMark F. Adams PetscReal *fid_glid_loc,*fiddata; 1189a2f3521dSMark F. Adams PetscInt stride; 11902e68589bSMark F. Adams 11912e68589bSMark F. Adams ierr = PetscMalloc(nloc*sizeof(PetscReal), &fid_glid_loc);CHKERRQ(ierr); 11922e68589bSMark F. Adams for (kk=0; kk<nloc; kk++) fid_glid_loc[kk] = (PetscReal)(my0+kk); 1193806fa848SBarry Smith ierr = PCGAMGGetDataWithGhosts(Gmat, 1, fid_glid_loc, &stride, &fiddata);CHKERRQ(ierr); 1194a2f3521dSMark F. Adams ierr = PetscMalloc(stride*sizeof(PetscInt), &flid_fgid);CHKERRQ(ierr); 1195a2f3521dSMark F. Adams for (kk=0; kk<stride; kk++) flid_fgid[kk] = (PetscInt)fiddata[kk]; 11962e68589bSMark F. Adams ierr = PetscFree(fiddata);CHKERRQ(ierr); 1197a2f3521dSMark F. Adams 1198*71959b99SBarry Smith if (stride != nbnodes/bs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"stride %D != nbnodes %D/bs %D",stride,nbnodes,bs); 11992e68589bSMark F. Adams ierr = PetscFree(fid_glid_loc);CHKERRQ(ierr); 1200806fa848SBarry Smith } else { 12012e68589bSMark F. Adams ierr = PetscMalloc(nloc*sizeof(PetscInt), &flid_fgid);CHKERRQ(ierr); 12022e68589bSMark F. Adams for (kk=0; kk<nloc; kk++) flid_fgid[kk] = my0 + kk; 12032e68589bSMark F. Adams } 12040cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 12050cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(petsc_gamg_setup_events[SET7],0,0,0,0);CHKERRQ(ierr); 12060cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(petsc_gamg_setup_events[SET8],0,0,0,0);CHKERRQ(ierr); 12072e68589bSMark F. Adams #endif 1208c8b0795cSMark F. Adams { 12090298fd71SBarry Smith PetscReal *data_out = NULL; 1210806fa848SBarry Smith ierr = formProl0(agg_lists, bs, data_cols, myCrs0, nbnodes,data_w_ghost, flid_fgid, &data_out, Prol);CHKERRQ(ierr); 1211c8b0795cSMark F. Adams ierr = PetscFree(pc_gamg->data);CHKERRQ(ierr); 12122fa5cd67SKarl Rupp 1213c8b0795cSMark F. Adams pc_gamg->data = data_out; 1214c8b0795cSMark F. Adams pc_gamg->data_cell_rows = data_cols; 1215c8b0795cSMark F. Adams pc_gamg->data_sz = data_cols*data_cols*nLocalSelected; 1216c8b0795cSMark F. Adams } 12170cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 12180cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(petsc_gamg_setup_events[SET8],0,0,0,0);CHKERRQ(ierr); 1219c8b0795cSMark F. Adams #endif 1220c5df96a5SBarry Smith if (size > 1) ierr = PetscFree(data_w_ghost);CHKERRQ(ierr); 12212e68589bSMark F. Adams ierr = PetscFree(flid_fgid);CHKERRQ(ierr); 12222e68589bSMark F. Adams 1223c8b0795cSMark F. Adams *a_P_out = Prol; /* out */ 12240cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG 12250cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(PC_GAMGProlongator_AGG,0,0,0,0);CHKERRQ(ierr); 12260cbbd2e1SMark F. Adams #endif 1227c8b0795cSMark F. Adams PetscFunctionReturn(0); 1228c8b0795cSMark F. Adams } 1229c8b0795cSMark F. Adams 1230c8b0795cSMark F. Adams /* -------------------------------------------------------------------------- */ 1231c8b0795cSMark F. Adams /* 12320cbbd2e1SMark F. Adams PCGAMGOptprol_AGG 1233c8b0795cSMark F. Adams 1234c8b0795cSMark F. Adams Input Parameter: 1235c8b0795cSMark F. Adams . pc - this 1236c8b0795cSMark F. Adams . Amat - matrix on this fine level 1237c8b0795cSMark F. Adams In/Output Parameter: 1238c8b0795cSMark F. Adams . a_P_out - prolongation operator to the next level 1239c8b0795cSMark F. Adams */ 1240c8b0795cSMark F. Adams #undef __FUNCT__ 12410cbbd2e1SMark F. Adams #define __FUNCT__ "PCGAMGOptprol_AGG" 12422fa5cd67SKarl Rupp PetscErrorCode PCGAMGOptprol_AGG(PC pc,const Mat Amat,Mat *a_P) 1243c8b0795cSMark F. Adams { 1244c8b0795cSMark F. Adams PetscErrorCode ierr; 1245c8b0795cSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 1246c8b0795cSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 1247c8b0795cSMark F. Adams const PetscInt verbose = pc_gamg->verbose; 1248c8b0795cSMark F. Adams PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx; 1249c8b0795cSMark F. Adams PetscInt jj; 1250c5df96a5SBarry Smith PetscMPIInt rank,size; 1251c8b0795cSMark F. Adams Mat Prol = *a_P; 1252c8b0795cSMark F. Adams MPI_Comm wcomm = ((PetscObject)Amat)->comm; 1253c8b0795cSMark F. Adams 1254c8b0795cSMark F. Adams PetscFunctionBegin; 12550cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG 12560cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(PC_GAMGOptprol_AGG,0,0,0,0);CHKERRQ(ierr); 12570cbbd2e1SMark F. Adams #endif 1258c5df96a5SBarry Smith ierr = MPI_Comm_rank(wcomm, &rank);CHKERRQ(ierr); 1259c5df96a5SBarry Smith ierr = MPI_Comm_size(wcomm, &size);CHKERRQ(ierr); 1260c8b0795cSMark F. Adams 12612e68589bSMark F. Adams /* smooth P0 */ 1262c8b0795cSMark F. Adams for (jj = 0; jj < pc_gamg_agg->nsmooths; jj++) { 12632e68589bSMark F. Adams Mat tMat; 12642e68589bSMark F. Adams Vec diag; 12652e68589bSMark F. Adams PetscReal alpha, emax, emin; 12660cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 12670cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(petsc_gamg_setup_events[SET9],0,0,0,0);CHKERRQ(ierr); 12682e68589bSMark F. Adams #endif 12692e68589bSMark F. Adams if (jj == 0) { 12702e68589bSMark F. Adams KSP eksp; 12712e68589bSMark F. Adams Vec bb, xx; 1272da509fc8SJed Brown PC epc; 12732e68589bSMark F. Adams ierr = MatGetVecs(Amat, &bb, 0);CHKERRQ(ierr); 12742e68589bSMark F. Adams ierr = MatGetVecs(Amat, &xx, 0);CHKERRQ(ierr); 12752e68589bSMark F. Adams { 12762e68589bSMark F. Adams PetscRandom rctx; 12772e68589bSMark F. Adams ierr = PetscRandomCreate(wcomm,&rctx);CHKERRQ(ierr); 12782e68589bSMark F. Adams ierr = PetscRandomSetFromOptions(rctx);CHKERRQ(ierr); 12792e68589bSMark F. Adams ierr = VecSetRandom(bb,rctx);CHKERRQ(ierr); 12802e68589bSMark F. Adams ierr = PetscRandomDestroy(&rctx);CHKERRQ(ierr); 12812e68589bSMark F. Adams } 1282e696ed0bSMark F. Adams 1283e696ed0bSMark F. Adams /* zeroing out BC rows -- needed for crazy matrices */ 1284e696ed0bSMark F. Adams { 1285e696ed0bSMark F. Adams PetscInt Istart,Iend,ncols,jj,Ii; 1286e696ed0bSMark F. Adams PetscScalar zero = 0.0; 1287e696ed0bSMark F. Adams ierr = MatGetOwnershipRange(Amat, &Istart, &Iend);CHKERRQ(ierr); 1288e696ed0bSMark F. Adams for (Ii = Istart, jj = 0; Ii < Iend; Ii++, jj++) { 1289e696ed0bSMark F. Adams ierr = MatGetRow(Amat,Ii,&ncols,0,0);CHKERRQ(ierr); 1290e696ed0bSMark F. Adams if (ncols <= 1) { 1291e696ed0bSMark F. Adams ierr = VecSetValues(bb, 1, &Ii, &zero, INSERT_VALUES);CHKERRQ(ierr); 1292e696ed0bSMark F. Adams } 1293e696ed0bSMark F. Adams ierr = MatRestoreRow(Amat,Ii,&ncols,0,0);CHKERRQ(ierr); 1294e696ed0bSMark F. Adams } 1295e696ed0bSMark F. Adams ierr = VecAssemblyBegin(bb);CHKERRQ(ierr); 1296e696ed0bSMark F. Adams ierr = VecAssemblyEnd(bb);CHKERRQ(ierr); 1297e696ed0bSMark F. Adams } 1298e696ed0bSMark F. Adams 12992e68589bSMark F. Adams ierr = KSPCreate(wcomm,&eksp);CHKERRQ(ierr); 1300806fa848SBarry Smith ierr = KSPSetTolerances(eksp,PETSC_DEFAULT,PETSC_DEFAULT,PETSC_DEFAULT,10);CHKERRQ(ierr); 13012e68589bSMark F. Adams ierr = KSPSetNormType(eksp, KSP_NORM_NONE);CHKERRQ(ierr); 1302da509fc8SJed Brown ierr = KSPSetOptionsPrefix(eksp,((PetscObject)pc)->prefix);CHKERRQ(ierr); 1303c2436cacSMark F. Adams ierr = KSPAppendOptionsPrefix(eksp, "gamg_est_");CHKERRQ(ierr); 1304c2436cacSMark F. Adams ierr = KSPSetFromOptions(eksp);CHKERRQ(ierr); 1305c2436cacSMark F. Adams 1306c2436cacSMark F. Adams ierr = KSPSetInitialGuessNonzero(eksp, PETSC_FALSE);CHKERRQ(ierr); 1307806fa848SBarry Smith ierr = KSPSetOperators(eksp, Amat, Amat, SAME_NONZERO_PATTERN);CHKERRQ(ierr); 13082e68589bSMark F. Adams ierr = KSPSetComputeSingularValues(eksp,PETSC_TRUE);CHKERRQ(ierr); 13092e68589bSMark F. Adams 1310da509fc8SJed Brown ierr = KSPGetPC(eksp, &epc);CHKERRQ(ierr); 1311da509fc8SJed Brown ierr = PCSetType(epc, PCJACOBI);CHKERRQ(ierr); /* smoother in smoothed agg. */ 1312c2436cacSMark F. Adams 13132e68589bSMark F. Adams /* solve - keep stuff out of logging */ 13142e68589bSMark F. Adams ierr = PetscLogEventDeactivate(KSP_Solve);CHKERRQ(ierr); 13152e68589bSMark F. Adams ierr = PetscLogEventDeactivate(PC_Apply);CHKERRQ(ierr); 13162e68589bSMark F. Adams ierr = KSPSolve(eksp, bb, xx);CHKERRQ(ierr); 13172e68589bSMark F. Adams ierr = PetscLogEventActivate(KSP_Solve);CHKERRQ(ierr); 13182e68589bSMark F. Adams ierr = PetscLogEventActivate(PC_Apply);CHKERRQ(ierr); 13192e68589bSMark F. Adams 13202e68589bSMark F. Adams ierr = KSPComputeExtremeSingularValues(eksp, &emax, &emin);CHKERRQ(ierr); 13219f3f12c8SMark F. Adams if (verbose > 0) { 1322c8b0795cSMark F. Adams PetscPrintf(wcomm,"\t\t\t%s smooth P0: max eigen=%e min=%e PC=%s\n", 13232e68589bSMark F. Adams __FUNCT__,emax,emin,PCJACOBI); 13242e68589bSMark F. Adams } 13252e68589bSMark F. Adams ierr = VecDestroy(&xx);CHKERRQ(ierr); 13262e68589bSMark F. Adams ierr = VecDestroy(&bb);CHKERRQ(ierr); 13272e68589bSMark F. Adams ierr = KSPDestroy(&eksp);CHKERRQ(ierr); 13282e68589bSMark F. Adams 13292e68589bSMark F. Adams if (pc_gamg->emax_id == -1) { 13303bf036e2SBarry Smith ierr = PetscObjectComposedDataRegister(&pc_gamg->emax_id);CHKERRQ(ierr); 1331*71959b99SBarry Smith if (pc_gamg->emax_id == -1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"pc_gamg->emax_id == -1"); 13322e68589bSMark F. Adams } 13332e68589bSMark F. Adams ierr = PetscObjectComposedDataSetScalar((PetscObject)Amat, pc_gamg->emax_id, emax);CHKERRQ(ierr); 13342e68589bSMark F. Adams } 13352e68589bSMark F. Adams 13362e68589bSMark F. Adams /* smooth P1 := (I - omega/lam D^{-1}A)P0 */ 13372e68589bSMark F. Adams ierr = MatMatMult(Amat, Prol, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &tMat);CHKERRQ(ierr); 13382e68589bSMark F. Adams ierr = MatGetVecs(Amat, &diag, 0);CHKERRQ(ierr); 13392e68589bSMark F. Adams ierr = MatGetDiagonal(Amat, diag);CHKERRQ(ierr); /* effectively PCJACOBI */ 13402e68589bSMark F. Adams ierr = VecReciprocal(diag);CHKERRQ(ierr); 13412e68589bSMark F. Adams ierr = MatDiagonalScale(tMat, diag, 0);CHKERRQ(ierr); 13422e68589bSMark F. Adams ierr = VecDestroy(&diag);CHKERRQ(ierr); 1343b4ec6429SMark F. Adams alpha = -1.4/emax; 13442e68589bSMark F. Adams ierr = MatAYPX(tMat, alpha, Prol, SUBSET_NONZERO_PATTERN);CHKERRQ(ierr); 13452e68589bSMark F. Adams ierr = MatDestroy(&Prol);CHKERRQ(ierr); 13462e68589bSMark F. Adams Prol = tMat; 13470cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 13480cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(petsc_gamg_setup_events[SET9],0,0,0,0);CHKERRQ(ierr); 13492e68589bSMark F. Adams #endif 13502e68589bSMark F. Adams } 13510cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG 13520cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(PC_GAMGOptprol_AGG,0,0,0,0);CHKERRQ(ierr); 13530cbbd2e1SMark F. Adams #endif 1354c8b0795cSMark F. Adams *a_P = Prol; 1355c8b0795cSMark F. Adams PetscFunctionReturn(0); 13562e68589bSMark F. Adams } 13572e68589bSMark F. Adams 1358c8b0795cSMark F. Adams /* -------------------------------------------------------------------------- */ 1359c8b0795cSMark F. Adams /* 1360a2f3521dSMark F. Adams PCGAMGKKTProl_AGG 1361a2f3521dSMark F. Adams 1362a2f3521dSMark F. Adams Input Parameter: 1363a2f3521dSMark F. Adams . pc - this 1364a2f3521dSMark F. Adams . Prol11 - matrix on this fine level 1365a2f3521dSMark F. Adams . A21 - matrix on this fine level 1366a2f3521dSMark F. Adams In/Output Parameter: 1367a2f3521dSMark F. Adams . a_P22 - prolongation operator to the next level 1368a2f3521dSMark F. Adams */ 1369a2f3521dSMark F. Adams #undef __FUNCT__ 1370a2f3521dSMark F. Adams #define __FUNCT__ "PCGAMGKKTProl_AGG" 13712fa5cd67SKarl Rupp PetscErrorCode PCGAMGKKTProl_AGG(PC pc,const Mat Prol11,const Mat A21,Mat *a_P22) 1372a2f3521dSMark F. Adams { 1373a2f3521dSMark F. Adams PetscErrorCode ierr; 1374a2f3521dSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 1375a2f3521dSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 1376a2f3521dSMark F. Adams const PetscInt verbose = pc_gamg->verbose; 1377a2f3521dSMark F. Adams /* PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx; */ 1378c5df96a5SBarry Smith PetscMPIInt rank,size; 1379a2f3521dSMark F. Adams Mat Prol22,Tmat,Gmat; 1380a2f3521dSMark F. Adams MPI_Comm wcomm = ((PetscObject)pc)->comm; 1381a2f3521dSMark F. Adams PetscCoarsenData *agg_lists; 1382a2f3521dSMark F. Adams 1383a2f3521dSMark F. Adams PetscFunctionBegin; 1384a2f3521dSMark F. Adams #if defined PETSC_USE_LOG 1385a2f3521dSMark F. Adams ierr = PetscLogEventBegin(PC_GAMGKKTProl_AGG,0,0,0,0);CHKERRQ(ierr); 1386a2f3521dSMark F. Adams #endif 1387c5df96a5SBarry Smith ierr = MPI_Comm_rank(wcomm, &rank);CHKERRQ(ierr); 1388c5df96a5SBarry Smith ierr = MPI_Comm_size(wcomm, &size);CHKERRQ(ierr); 1389a2f3521dSMark F. Adams 1390a2f3521dSMark F. Adams /* form C graph */ 1391a2f3521dSMark F. Adams ierr = MatMatMult(A21, Prol11, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Tmat);CHKERRQ(ierr); 1392a2f3521dSMark F. Adams ierr = MatMatTransposeMult(Tmat, Tmat, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Gmat);CHKERRQ(ierr); 1393a2f3521dSMark F. Adams ierr = MatDestroy(&Tmat);CHKERRQ(ierr); 1394a2f3521dSMark F. Adams ierr = PCGAMGFilterGraph(&Gmat, 0.0, PETSC_FALSE, verbose);CHKERRQ(ierr); 1395a2f3521dSMark F. Adams 1396a2f3521dSMark F. Adams /* coarsen constraints */ 1397a2f3521dSMark F. Adams { 1398a2f3521dSMark F. Adams MatCoarsen crs; 1399a2f3521dSMark F. Adams ierr = MatCoarsenCreate(wcomm, &crs);CHKERRQ(ierr); 1400a2f3521dSMark F. Adams ierr = MatCoarsenSetType(crs, MATCOARSENMIS);CHKERRQ(ierr); 1401a2f3521dSMark F. Adams ierr = MatCoarsenSetAdjacency(crs, Gmat);CHKERRQ(ierr); 1402a2f3521dSMark F. Adams ierr = MatCoarsenSetVerbose(crs, verbose);CHKERRQ(ierr); 1403a2f3521dSMark F. Adams ierr = MatCoarsenSetStrictAggs(crs, PETSC_TRUE);CHKERRQ(ierr); 1404a2f3521dSMark F. Adams ierr = MatCoarsenApply(crs);CHKERRQ(ierr); 1405a2f3521dSMark F. Adams ierr = MatCoarsenGetData(crs, &agg_lists);CHKERRQ(ierr); 1406a2f3521dSMark F. Adams ierr = MatCoarsenDestroy(&crs);CHKERRQ(ierr); 1407a2f3521dSMark F. Adams } 1408a2f3521dSMark F. Adams 1409a2f3521dSMark F. Adams /* form simple prolongation 'Prol22' */ 1410a2f3521dSMark F. Adams { 1411a2f3521dSMark F. Adams PetscInt ii,mm,clid,my0,nloc,nLocalSelected; 1412a2f3521dSMark F. Adams PetscScalar val = 1.0; 1413a2f3521dSMark F. Adams /* get 'nLocalSelected' */ 1414a2f3521dSMark F. Adams ierr = MatGetLocalSize(Gmat, &nloc, &ii);CHKERRQ(ierr); 1415a2f3521dSMark F. Adams for (ii=0, nLocalSelected = 0; ii < nloc; ii++) { 1416a2f3521dSMark F. Adams PetscBool ise; 1417a2f3521dSMark F. Adams /* filter out singletons 0 or 1? */ 1418a2f3521dSMark F. Adams ierr = PetscCDEmptyAt(agg_lists, ii, &ise);CHKERRQ(ierr); 1419a2f3521dSMark F. Adams if (!ise) nLocalSelected++; 1420a2f3521dSMark F. Adams } 1421a2f3521dSMark F. Adams 1422a2f3521dSMark F. Adams ierr = MatCreate(wcomm,&Prol22);CHKERRQ(ierr); 1423806fa848SBarry Smith ierr = MatSetSizes(Prol22,nloc, nLocalSelected,PETSC_DETERMINE, PETSC_DETERMINE);CHKERRQ(ierr); 1424a2f3521dSMark F. Adams ierr = MatSetType(Prol22, MATAIJ);CHKERRQ(ierr); 14250298fd71SBarry Smith ierr = MatSeqAIJSetPreallocation(Prol22,1,NULL);CHKERRQ(ierr); 14260298fd71SBarry Smith ierr = MatMPIAIJSetPreallocation(Prol22,1,NULL,1,NULL);CHKERRQ(ierr); 1427a2f3521dSMark F. Adams /* ierr = MatCreateAIJ(wcomm, */ 1428a2f3521dSMark F. Adams /* nloc, nLocalSelected, */ 1429a2f3521dSMark F. Adams /* PETSC_DETERMINE, PETSC_DETERMINE, */ 14300298fd71SBarry Smith /* 1, NULL, 1, NULL, */ 1431a2f3521dSMark F. Adams /* &Prol22); */ 1432a2f3521dSMark F. Adams 1433a2f3521dSMark F. Adams ierr = MatGetOwnershipRange(Prol22, &my0, &ii);CHKERRQ(ierr); 1434a2f3521dSMark F. Adams nloc = ii - my0; 1435a2f3521dSMark F. Adams 1436a2f3521dSMark F. Adams /* make aggregates */ 1437a2f3521dSMark F. Adams for (mm = clid = 0; mm < nloc; mm++) { 1438a2f3521dSMark F. Adams ierr = PetscCDSizeAt(agg_lists, mm, &ii);CHKERRQ(ierr); 1439a2f3521dSMark F. Adams if (ii > 0) { 1440a2f3521dSMark F. Adams PetscInt asz=ii,cgid=my0+clid,rids[1000]; 1441a2f3521dSMark F. Adams PetscCDPos pos; 1442c666adbfSMark F. Adams if (asz>1000) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Very large aggregate: %d",asz); 1443a2f3521dSMark F. Adams ii = 0; 1444a2f3521dSMark F. Adams ierr = PetscCDGetHeadPos(agg_lists,mm,&pos);CHKERRQ(ierr); 1445a2f3521dSMark F. Adams while (pos) { 1446a2f3521dSMark F. Adams PetscInt gid1; 1447a2f3521dSMark F. Adams ierr = PetscLLNGetID(pos, &gid1);CHKERRQ(ierr); 1448a2f3521dSMark F. Adams ierr = PetscCDGetNextPos(agg_lists,mm,&pos);CHKERRQ(ierr); 1449a2f3521dSMark F. Adams 1450a2f3521dSMark F. Adams rids[ii++] = gid1; 1451a2f3521dSMark F. Adams } 1452*71959b99SBarry Smith if (ii != asz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"ii %D != asz %D",ii,asz); 1453a2f3521dSMark F. Adams /* add diagonal block of P0 */ 1454a2f3521dSMark F. Adams ierr = MatSetValues(Prol22,asz,rids,1,&cgid,&val,INSERT_VALUES);CHKERRQ(ierr); 1455a2f3521dSMark F. Adams 1456a2f3521dSMark F. Adams clid++; 1457a2f3521dSMark F. Adams } /* coarse agg */ 1458a2f3521dSMark F. Adams } /* for all fine nodes */ 1459a2f3521dSMark F. Adams ierr = MatAssemblyBegin(Prol22,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1460a2f3521dSMark F. Adams ierr = MatAssemblyEnd(Prol22,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1461a2f3521dSMark F. Adams } 1462a2f3521dSMark F. Adams 1463a2f3521dSMark F. Adams /* clean up */ 1464a2f3521dSMark F. Adams ierr = MatDestroy(&Gmat);CHKERRQ(ierr); 1465a2f3521dSMark F. Adams ierr = PetscCDDestroy(agg_lists);CHKERRQ(ierr); 1466a2f3521dSMark F. Adams #if defined PETSC_USE_LOG 1467a2f3521dSMark F. Adams ierr = PetscLogEventEnd(PC_GAMGKKTProl_AGG,0,0,0,0);CHKERRQ(ierr); 1468a2f3521dSMark F. Adams #endif 1469a2f3521dSMark F. Adams *a_P22 = Prol22; 1470a2f3521dSMark F. Adams PetscFunctionReturn(0); 1471a2f3521dSMark F. Adams } 1472a2f3521dSMark F. Adams 1473a2f3521dSMark F. Adams /* -------------------------------------------------------------------------- */ 1474a2f3521dSMark F. Adams /* 1475c8b0795cSMark F. Adams PCCreateGAMG_AGG 14762e68589bSMark F. Adams 1477c8b0795cSMark F. Adams Input Parameter: 1478c8b0795cSMark F. Adams . pc - 1479c8b0795cSMark F. Adams */ 1480c8b0795cSMark F. Adams #undef __FUNCT__ 1481c8b0795cSMark F. Adams #define __FUNCT__ "PCCreateGAMG_AGG" 1482c8b0795cSMark F. Adams PetscErrorCode PCCreateGAMG_AGG(PC pc) 1483c8b0795cSMark F. Adams { 1484c8b0795cSMark F. Adams PetscErrorCode ierr; 1485c8b0795cSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 1486c8b0795cSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 1487c8b0795cSMark F. Adams PC_GAMG_AGG *pc_gamg_agg; 14882e68589bSMark F. Adams 1489c8b0795cSMark F. Adams PetscFunctionBegin; 1490ef820a72SMark F. Adams if (pc_gamg->subctx) { 1491ef820a72SMark F. Adams /* call base class */ 1492ef820a72SMark F. Adams ierr = PCDestroy_GAMG(pc);CHKERRQ(ierr); 1493ef820a72SMark F. Adams } 1494ef820a72SMark F. Adams 1495c8b0795cSMark F. Adams /* create sub context for SA */ 1496c8b0795cSMark F. Adams ierr = PetscNewLog(pc, PC_GAMG_AGG, &pc_gamg_agg);CHKERRQ(ierr); 1497c8b0795cSMark F. Adams pc_gamg->subctx = pc_gamg_agg; 1498c8b0795cSMark F. Adams 1499c8b0795cSMark F. Adams pc->ops->setfromoptions = PCSetFromOptions_GAMG_AGG; 1500c8b0795cSMark F. Adams pc->ops->destroy = PCDestroy_AGG; 1501c8b0795cSMark F. Adams /* reset does not do anything; setup not virtual */ 1502c8b0795cSMark F. Adams 1503c8b0795cSMark F. Adams /* set internal function pointers */ 1504c8b0795cSMark F. Adams pc_gamg->graph = PCGAMGgraph_AGG; 1505b43b03e9SMark F. Adams pc_gamg->coarsen = PCGAMGCoarsen_AGG; 15060cbbd2e1SMark F. Adams pc_gamg->prolongator = PCGAMGProlongator_AGG; 15070cbbd2e1SMark F. Adams pc_gamg->optprol = PCGAMGOptprol_AGG; 1508a2f3521dSMark F. Adams pc_gamg->formkktprol = PCGAMGKKTProl_AGG; 1509c8b0795cSMark F. Adams 1510c8b0795cSMark F. Adams pc_gamg->createdefaultdata = PCSetData_AGG; 1511c8b0795cSMark F. Adams 15123bf036e2SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)pc,"PCSetCoordinates_C","PCSetCoordinates_AGG",PCSetCoordinates_AGG);CHKERRQ(ierr); 15132e68589bSMark F. Adams PetscFunctionReturn(0); 15142e68589bSMark F. Adams } 1515