12e68589bSMark F. Adams /* 22e68589bSMark F. Adams GAMG geometric-algebric multiogrid PC - Mark Adams 2011 32e68589bSMark F. Adams */ 42e68589bSMark F. Adams 52e68589bSMark F. Adams #include <../src/ksp/pc/impls/gamg/gamg.h> /*I "petscpc.h" I*/ 6b45d2f2cSJed Brown #include <petsc-private/kspimpl.h> 72e68589bSMark F. Adams 82e68589bSMark F. Adams #include <petscblaslapack.h> 92e68589bSMark F. Adams 102e68589bSMark F. Adams typedef struct { 11c8b0795cSMark F. Adams PetscInt nsmooths; 12c8b0795cSMark F. Adams PetscBool sym_graph; 13ef4ad70eSMark F. Adams PetscBool square_graph; 142e68589bSMark F. Adams } PC_GAMG_AGG; 152e68589bSMark F. Adams 162e68589bSMark F. Adams #undef __FUNCT__ 172e68589bSMark F. Adams #define __FUNCT__ "PCGAMGSetNSmooths" 182e68589bSMark F. Adams /*@ 192e68589bSMark F. Adams PCGAMGSetNSmooths - Set number of smoothing steps (1 is typical) 202e68589bSMark F. Adams 212e68589bSMark F. Adams Not Collective on PC 222e68589bSMark F. Adams 232e68589bSMark F. Adams Input Parameters: 242e68589bSMark F. Adams . pc - the preconditioner context 252e68589bSMark F. Adams 262e68589bSMark F. Adams Options Database Key: 272e68589bSMark F. Adams . -pc_gamg_agg_nsmooths 282e68589bSMark F. Adams 292e68589bSMark F. Adams Level: intermediate 302e68589bSMark F. Adams 312e68589bSMark F. Adams Concepts: Aggregation AMG preconditioner 322e68589bSMark F. Adams 332e68589bSMark F. Adams .seealso: () 342e68589bSMark F. Adams @*/ 352e68589bSMark F. Adams PetscErrorCode PCGAMGSetNSmooths(PC pc, PetscInt n) 362e68589bSMark F. Adams { 372e68589bSMark F. Adams PetscErrorCode ierr; 382e68589bSMark F. Adams 392e68589bSMark F. Adams PetscFunctionBegin; 402e68589bSMark F. Adams PetscValidHeaderSpecific(pc,PC_CLASSID,1); 412e68589bSMark F. Adams ierr = PetscTryMethod(pc,"PCGAMGSetNSmooths_C",(PC,PetscInt),(pc,n));CHKERRQ(ierr); 422e68589bSMark F. Adams PetscFunctionReturn(0); 432e68589bSMark F. Adams } 442e68589bSMark F. Adams 452e68589bSMark F. Adams #undef __FUNCT__ 462e68589bSMark F. Adams #define __FUNCT__ "PCGAMGSetNSmooths_GAMG" 472e68589bSMark F. Adams PetscErrorCode PCGAMGSetNSmooths_GAMG(PC pc, PetscInt n) 482e68589bSMark F. Adams { 492e68589bSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 502e68589bSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 51c8b0795cSMark F. Adams PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx; 522e68589bSMark F. Adams 532e68589bSMark F. Adams PetscFunctionBegin; 54c8b0795cSMark F. Adams pc_gamg_agg->nsmooths = n; 55c8b0795cSMark F. Adams PetscFunctionReturn(0); 56c8b0795cSMark F. Adams } 57c8b0795cSMark F. Adams 58c8b0795cSMark F. Adams #undef __FUNCT__ 59c8b0795cSMark F. Adams #define __FUNCT__ "PCGAMGSetSymGraph" 60c8b0795cSMark F. Adams /*@ 61c8b0795cSMark F. Adams PCGAMGSetSymGraph - 62c8b0795cSMark F. Adams 63c8b0795cSMark F. Adams Not Collective on PC 64c8b0795cSMark F. Adams 65c8b0795cSMark F. Adams Input Parameters: 66c8b0795cSMark F. Adams . pc - the preconditioner context 67c8b0795cSMark F. Adams 68c8b0795cSMark F. Adams Options Database Key: 69c8b0795cSMark F. Adams . -pc_gamg_sym_graph 70c8b0795cSMark F. Adams 71c8b0795cSMark F. Adams Level: intermediate 72c8b0795cSMark F. Adams 73c8b0795cSMark F. Adams Concepts: Aggregation AMG preconditioner 74c8b0795cSMark F. Adams 75c8b0795cSMark F. Adams .seealso: () 76c8b0795cSMark F. Adams @*/ 77c8b0795cSMark F. Adams PetscErrorCode PCGAMGSetSymGraph(PC pc, PetscBool n) 78c8b0795cSMark F. Adams { 79c8b0795cSMark F. Adams PetscErrorCode ierr; 80c8b0795cSMark F. Adams 81c8b0795cSMark F. Adams PetscFunctionBegin; 82c8b0795cSMark F. Adams PetscValidHeaderSpecific(pc,PC_CLASSID,1); 83c8b0795cSMark F. Adams ierr = PetscTryMethod(pc,"PCGAMGSetSymGraph_C",(PC,PetscBool),(pc,n));CHKERRQ(ierr); 84c8b0795cSMark F. Adams PetscFunctionReturn(0); 85c8b0795cSMark F. Adams } 86c8b0795cSMark F. Adams 87c8b0795cSMark F. Adams #undef __FUNCT__ 88c8b0795cSMark F. Adams #define __FUNCT__ "PCGAMGSetSymGraph_GAMG" 89c8b0795cSMark F. Adams PetscErrorCode PCGAMGSetSymGraph_GAMG(PC pc, PetscBool n) 90c8b0795cSMark F. Adams { 91c8b0795cSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 92c8b0795cSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 93c8b0795cSMark F. Adams PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx; 94c8b0795cSMark F. Adams 95c8b0795cSMark F. Adams PetscFunctionBegin; 96c8b0795cSMark F. Adams pc_gamg_agg->sym_graph = n; 972e68589bSMark F. Adams PetscFunctionReturn(0); 982e68589bSMark F. Adams } 992e68589bSMark F. Adams 100ef4ad70eSMark F. Adams #undef __FUNCT__ 101ef4ad70eSMark F. Adams #define __FUNCT__ "PCGAMGSetSquareGraph" 102ef4ad70eSMark F. Adams /*@ 103ef4ad70eSMark F. Adams PCGAMGSetSquareGraph - 104ef4ad70eSMark F. Adams 105ef4ad70eSMark F. Adams Not Collective on PC 106ef4ad70eSMark F. Adams 107ef4ad70eSMark F. Adams Input Parameters: 108ef4ad70eSMark F. Adams . pc - the preconditioner context 109ef4ad70eSMark F. Adams 110ef4ad70eSMark F. Adams Options Database Key: 111ef4ad70eSMark F. Adams . -pc_gamg_square_graph 112ef4ad70eSMark F. Adams 113ef4ad70eSMark F. Adams Level: intermediate 114ef4ad70eSMark F. Adams 115ef4ad70eSMark F. Adams Concepts: Aggregation AMG preconditioner 116ef4ad70eSMark F. Adams 117ef4ad70eSMark F. Adams .seealso: () 118ef4ad70eSMark F. Adams @*/ 119ef4ad70eSMark F. Adams PetscErrorCode PCGAMGSetSquareGraph(PC pc, PetscBool n) 120ef4ad70eSMark F. Adams { 121ef4ad70eSMark F. Adams PetscErrorCode ierr; 122ef4ad70eSMark F. Adams 123ef4ad70eSMark F. Adams PetscFunctionBegin; 124ef4ad70eSMark F. Adams PetscValidHeaderSpecific(pc,PC_CLASSID,1); 125ef4ad70eSMark F. Adams ierr = PetscTryMethod(pc,"PCGAMGSetSquareGraph_C",(PC,PetscBool),(pc,n));CHKERRQ(ierr); 126ef4ad70eSMark F. Adams PetscFunctionReturn(0); 127ef4ad70eSMark F. Adams } 128ef4ad70eSMark F. Adams 129ef4ad70eSMark F. Adams #undef __FUNCT__ 130ef4ad70eSMark F. Adams #define __FUNCT__ "PCGAMGSetSquareGraph_GAMG" 131ef4ad70eSMark F. Adams PetscErrorCode PCGAMGSetSquareGraph_GAMG(PC pc, PetscBool n) 132ef4ad70eSMark F. Adams { 133ef4ad70eSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 134ef4ad70eSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 135ef4ad70eSMark F. Adams PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx; 136ef4ad70eSMark F. Adams 137ef4ad70eSMark F. Adams PetscFunctionBegin; 138ef4ad70eSMark F. Adams pc_gamg_agg->square_graph = n; 139ef4ad70eSMark F. Adams PetscFunctionReturn(0); 140ef4ad70eSMark F. Adams } 141ef4ad70eSMark F. Adams 1422e68589bSMark F. Adams /* -------------------------------------------------------------------------- */ 1432e68589bSMark F. Adams /* 1442e68589bSMark F. Adams PCSetFromOptions_GAMG_AGG 1452e68589bSMark F. Adams 1462e68589bSMark F. Adams Input Parameter: 1472e68589bSMark F. Adams . pc - 1482e68589bSMark F. Adams */ 1492e68589bSMark F. Adams #undef __FUNCT__ 1502e68589bSMark F. Adams #define __FUNCT__ "PCSetFromOptions_GAMG_AGG" 1512e68589bSMark F. Adams PetscErrorCode PCSetFromOptions_GAMG_AGG(PC pc) 1522e68589bSMark F. Adams { 1532e68589bSMark F. Adams PetscErrorCode ierr; 1542e68589bSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 1552e68589bSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 156c8b0795cSMark F. Adams PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx; 1572e68589bSMark F. Adams PetscBool flag; 1582e68589bSMark F. Adams 1592e68589bSMark F. Adams PetscFunctionBegin; 1602e68589bSMark F. Adams 1612e68589bSMark F. Adams ierr = PetscOptionsHead("GAMG-AGG options");CHKERRQ(ierr); 1622e68589bSMark F. Adams { 1632e68589bSMark F. Adams /* -pc_gamg_agg_nsmooths */ 164c8b0795cSMark F. Adams pc_gamg_agg->nsmooths = 0; 1652fa5cd67SKarl Rupp 1662e68589bSMark F. Adams ierr = PetscOptionsInt("-pc_gamg_agg_nsmooths", 1672e68589bSMark F. Adams "smoothing steps for smoothed aggregation, usually 1 (0)", 1682e68589bSMark F. Adams "PCGAMGSetNSmooths", 169c8b0795cSMark F. Adams pc_gamg_agg->nsmooths, 170c8b0795cSMark F. Adams &pc_gamg_agg->nsmooths, 171806fa848SBarry Smith &flag);CHKERRQ(ierr); 172c8b0795cSMark F. Adams 173c8b0795cSMark F. Adams /* -pc_gamg_sym_graph */ 174c8b0795cSMark F. Adams pc_gamg_agg->sym_graph = PETSC_FALSE; 1752fa5cd67SKarl Rupp 176c8b0795cSMark F. Adams ierr = PetscOptionsBool("-pc_gamg_sym_graph", 177581a99e3SJed Brown "Set for asymmetric matrices", 178c8b0795cSMark F. Adams "PCGAMGSetSymGraph", 179c8b0795cSMark F. Adams pc_gamg_agg->sym_graph, 180c8b0795cSMark F. Adams &pc_gamg_agg->sym_graph, 181806fa848SBarry Smith &flag);CHKERRQ(ierr); 182ef4ad70eSMark F. Adams 183ef4ad70eSMark F. Adams /* -pc_gamg_square_graph */ 184ef4ad70eSMark F. Adams pc_gamg_agg->square_graph = PETSC_TRUE; 1852fa5cd67SKarl Rupp 186ef4ad70eSMark F. Adams ierr = PetscOptionsBool("-pc_gamg_square_graph", 1870cbbd2e1SMark F. Adams "For faster coarsening and lower coarse grid complexity", 188ef4ad70eSMark F. Adams "PCGAMGSetSquareGraph", 189ef4ad70eSMark F. Adams pc_gamg_agg->square_graph, 190ef4ad70eSMark F. Adams &pc_gamg_agg->square_graph, 191806fa848SBarry Smith &flag);CHKERRQ(ierr); 1922e68589bSMark F. Adams } 1932e68589bSMark F. Adams ierr = PetscOptionsTail();CHKERRQ(ierr); 1942e68589bSMark F. Adams PetscFunctionReturn(0); 1952e68589bSMark F. Adams } 1962e68589bSMark F. Adams 1972e68589bSMark F. Adams /* -------------------------------------------------------------------------- */ 1982e68589bSMark F. Adams /* 1992e68589bSMark F. Adams PCDestroy_AGG 2002e68589bSMark F. Adams 2012e68589bSMark F. Adams Input Parameter: 2022e68589bSMark F. Adams . pc - 2032e68589bSMark F. Adams */ 2042e68589bSMark F. Adams #undef __FUNCT__ 2059b8ffb57SJed Brown #define __FUNCT__ "PCDestroy_GAMG_AGG" 2069b8ffb57SJed Brown PetscErrorCode PCDestroy_GAMG_AGG(PC pc) 2072e68589bSMark F. Adams { 2082e68589bSMark F. Adams PetscErrorCode ierr; 2092e68589bSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 2102e68589bSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 2112e68589bSMark F. Adams 2122e68589bSMark F. Adams PetscFunctionBegin; 2139b8ffb57SJed Brown ierr = PetscFree(pc_gamg->subctx);CHKERRQ(ierr); 2142e68589bSMark F. Adams PetscFunctionReturn(0); 2152e68589bSMark F. Adams } 2162e68589bSMark F. Adams 2172e68589bSMark F. Adams /* -------------------------------------------------------------------------- */ 2182e68589bSMark F. Adams /* 2192e68589bSMark F. Adams PCSetCoordinates_AGG 220302f38e8SMark F. Adams - collective 2212e68589bSMark F. Adams 2222e68589bSMark F. Adams Input Parameter: 2232e68589bSMark F. Adams . pc - the preconditioner context 224a2f3521dSMark F. Adams . ndm - dimesion of data (used for dof/vertex for Stokes) 225302f38e8SMark F. Adams . a_nloc - number of vertices local 226302f38e8SMark F. Adams . coords - [a_nloc][ndm] - interleaved coordinate data: {x_0, y_0, z_0, x_1, y_1, ...} 2272e68589bSMark F. Adams */ 2281e6b0712SBarry Smith 2292e68589bSMark F. Adams #undef __FUNCT__ 2302e68589bSMark F. Adams #define __FUNCT__ "PCSetCoordinates_AGG" 2311e6b0712SBarry Smith static PetscErrorCode PCSetCoordinates_AGG(PC pc, PetscInt ndm, PetscInt a_nloc, PetscReal *coords) 2322e68589bSMark F. Adams { 2332e68589bSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 2342e68589bSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 2352e68589bSMark F. Adams PetscErrorCode ierr; 23669344418SMark F. Adams PetscInt arrsz,kk,ii,jj,nloc,ndatarows,ndf; 237a2f3521dSMark F. Adams Mat mat = pc->pmat; 2382e68589bSMark F. Adams 2392e68589bSMark F. Adams PetscFunctionBegin; 240a2f3521dSMark F. Adams PetscValidHeaderSpecific(pc,PC_CLASSID,1); 241a2f3521dSMark F. Adams PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 242302f38e8SMark F. Adams nloc = a_nloc; 2432e68589bSMark F. Adams 2442e68589bSMark F. Adams /* SA: null space vectors */ 24569344418SMark F. Adams ierr = MatGetBlockSize(mat, &ndf);CHKERRQ(ierr); /* this does not work for Stokes */ 24669344418SMark F. Adams if (coords && ndf==1) pc_gamg->data_cell_cols = 1; /* scalar w/ coords and SA (not needed) */ 247a2f3521dSMark F. Adams else if (coords) { 248c666adbfSMark F. Adams if (ndm > ndf) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"degrees of motion %d > block size %d",ndm,ndf); 24969344418SMark F. Adams pc_gamg->data_cell_cols = (ndm==2 ? 3 : 6); /* displacement elasticity */ 25069344418SMark F. Adams if (ndm != ndf) { 251c666adbfSMark F. Adams if (pc_gamg->data_cell_cols != ndf) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Don't know how to create null space for ndm=%d, ndf=%d. Use MatSetNearNullSpace.",ndm,ndf); 252a2f3521dSMark F. Adams } 253806fa848SBarry Smith } else pc_gamg->data_cell_cols = ndf; /* no data, force SA with constant null space vectors */ 25471959b99SBarry Smith pc_gamg->data_cell_rows = ndatarows = ndf; 25571959b99SBarry Smith if (pc_gamg->data_cell_cols <= 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"pc_gamg->data_cell_cols %D <= 0",pc_gamg->data_cell_cols); 256c8b0795cSMark F. Adams arrsz = nloc*pc_gamg->data_cell_rows*pc_gamg->data_cell_cols; 2572e68589bSMark F. Adams 2582e68589bSMark F. Adams /* create data - syntactic sugar that should be refactored at some point */ 2592e68589bSMark F. Adams if (pc_gamg->data==0 || (pc_gamg->data_sz != arrsz)) { 2602e68589bSMark F. Adams ierr = PetscFree(pc_gamg->data);CHKERRQ(ierr); 261302f38e8SMark F. Adams ierr = PetscMalloc((arrsz+1)*sizeof(PetscReal), &pc_gamg->data);CHKERRQ(ierr); 2622e68589bSMark F. Adams } 2632e68589bSMark F. Adams /* copy data in - column oriented */ 2642e68589bSMark F. Adams for (kk=0; kk<nloc; kk++) { 26569344418SMark F. Adams const PetscInt M = nloc*pc_gamg->data_cell_rows; /* stride into data */ 26669344418SMark F. Adams PetscReal *data = &pc_gamg->data[kk*ndatarows]; /* start of cell */ 267c8b0795cSMark F. Adams if (pc_gamg->data_cell_cols==1) *data = 1.0; 2682e68589bSMark F. Adams else { 26969344418SMark F. Adams /* translational modes */ 2702fa5cd67SKarl Rupp for (ii=0;ii<ndatarows;ii++) { 2712fa5cd67SKarl Rupp for (jj=0;jj<ndatarows;jj++) { 27269344418SMark F. Adams if (ii==jj)data[ii*M + jj] = 1.0; 2732e68589bSMark F. Adams else data[ii*M + jj] = 0.0; 2742fa5cd67SKarl Rupp } 2752fa5cd67SKarl Rupp } 27669344418SMark F. Adams 27769344418SMark F. Adams /* rotational modes */ 2782e68589bSMark F. Adams if (coords) { 27969344418SMark F. Adams if (ndm == 2) { 2802e68589bSMark F. Adams data += 2*M; 2812e68589bSMark F. Adams data[0] = -coords[2*kk+1]; 2822e68589bSMark F. Adams data[1] = coords[2*kk]; 283806fa848SBarry Smith } else { 2842e68589bSMark F. Adams data += 3*M; 2852e68589bSMark F. Adams data[0] = 0.0; data[M+0] = coords[3*kk+2]; data[2*M+0] = -coords[3*kk+1]; 2862e68589bSMark F. Adams data[1] = -coords[3*kk+2]; data[M+1] = 0.0; data[2*M+1] = coords[3*kk]; 2872e68589bSMark F. Adams data[2] = coords[3*kk+1]; data[M+2] = -coords[3*kk]; data[2*M+2] = 0.0; 2882e68589bSMark F. Adams } 2892e68589bSMark F. Adams } 2902e68589bSMark F. Adams } 2912e68589bSMark F. Adams } 2922e68589bSMark F. Adams 2932e68589bSMark F. Adams pc_gamg->data_sz = arrsz; 2942e68589bSMark F. Adams PetscFunctionReturn(0); 2952e68589bSMark F. Adams } 2962e68589bSMark F. Adams 297b43b03e9SMark F. Adams typedef PetscInt NState; 298b43b03e9SMark F. Adams static const NState NOT_DONE=-2; 299b43b03e9SMark F. Adams static const NState DELETED =-1; 300b43b03e9SMark F. Adams static const NState REMOVED =-3; 301b43b03e9SMark F. Adams #define IS_SELECTED(s) (s!=DELETED && s!=NOT_DONE && s!=REMOVED) 302b43b03e9SMark F. Adams 303c8b0795cSMark F. Adams /* -------------------------------------------------------------------------- */ 304c8b0795cSMark F. Adams /* 305b43b03e9SMark F. Adams smoothAggs - greedy grab of with G1 (unsquared graph) -- AIJ specific 306b43b03e9SMark F. Adams - AGG-MG specific: clears singletons out of 'selected_2' 307c8b0795cSMark F. Adams 308c8b0795cSMark F. Adams Input Parameter: 309c8b0795cSMark F. Adams . Gmat_2 - glabal matrix of graph (data not defined) 310c8b0795cSMark F. Adams . Gmat_1 - base graph to grab with 311c8b0795cSMark F. Adams Input/Output Parameter: 3120cbbd2e1SMark F. Adams . aggs_2 - linked list of aggs with gids) 313c8b0795cSMark F. Adams */ 314c8b0795cSMark F. Adams #undef __FUNCT__ 315c8b0795cSMark F. Adams #define __FUNCT__ "smoothAggs" 3160cbbd2e1SMark F. Adams static PetscErrorCode smoothAggs(const Mat Gmat_2, /* base (squared) graph */ 3170cbbd2e1SMark F. Adams const Mat Gmat_1, /* base graph */ 3180cbbd2e1SMark F. Adams /* const IS selected_2, [nselected local] selected vertices */ 3191147fc2aSKarl Rupp PetscCoarsenData *aggs_2) /* [nselected local] global ID of aggregate */ 320c8b0795cSMark F. Adams { 321c8b0795cSMark F. Adams PetscErrorCode ierr; 322c8b0795cSMark F. Adams PetscBool isMPI; 323c8b0795cSMark F. Adams Mat_SeqAIJ *matA_1, *matB_1=0, *matA_2, *matB_2=0; 3243b4367a7SBarry Smith MPI_Comm comm; 325c5df96a5SBarry Smith PetscMPIInt rank,size; 3260cbbd2e1SMark F. Adams PetscInt lid,*ii,*idx,ix,Iend,my0,kk,n,j; 327c8b0795cSMark F. Adams Mat_MPIAIJ *mpimat_2 = 0, *mpimat_1=0; 328c8b0795cSMark F. Adams const PetscInt nloc = Gmat_2->rmap->n; 3290cbbd2e1SMark F. Adams PetscScalar *cpcol_1_state,*cpcol_2_state,*cpcol_2_par_orig,*lid_parent_gid; 3300cbbd2e1SMark F. Adams PetscInt *lid_cprowID_1; 331c8b0795cSMark F. Adams NState *lid_state; 3320cbbd2e1SMark F. Adams Vec ghost_par_orig2; 333c8b0795cSMark F. Adams 334c8b0795cSMark F. Adams PetscFunctionBegin; 3353b4367a7SBarry Smith ierr = PetscObjectGetComm((PetscObject)Gmat_2,&comm);CHKERRQ(ierr); 3363b4367a7SBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 3373b4367a7SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 338c8b0795cSMark F. Adams ierr = MatGetOwnershipRange(Gmat_1,&my0,&Iend);CHKERRQ(ierr); 339c8b0795cSMark F. Adams 3400cbbd2e1SMark F. Adams if (PETSC_FALSE) { 341c8b0795cSMark F. Adams PetscViewer viewer; char fname[32]; static int llev=0; 342c8b0795cSMark F. Adams sprintf(fname,"Gmat2_%d.m",llev++); 3433b4367a7SBarry Smith PetscViewerASCIIOpen(comm,fname,&viewer); 344c8b0795cSMark F. Adams ierr = PetscViewerSetFormat(viewer, PETSC_VIEWER_ASCII_MATLAB);CHKERRQ(ierr); 345c8b0795cSMark F. Adams ierr = MatView(Gmat_2, viewer);CHKERRQ(ierr); 346c8b0795cSMark F. Adams ierr = PetscViewerDestroy(&viewer); 347c8b0795cSMark F. Adams } 348c8b0795cSMark F. Adams 349c8b0795cSMark F. Adams /* get submatrices */ 350251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)Gmat_1, MATMPIAIJ, &isMPI);CHKERRQ(ierr); 351c8b0795cSMark F. Adams if (isMPI) { 352c8b0795cSMark F. Adams /* grab matrix objects */ 353c8b0795cSMark F. Adams mpimat_2 = (Mat_MPIAIJ*)Gmat_2->data; 354c8b0795cSMark F. Adams mpimat_1 = (Mat_MPIAIJ*)Gmat_1->data; 355c8b0795cSMark F. Adams matA_1 = (Mat_SeqAIJ*)mpimat_1->A->data; 356c8b0795cSMark F. Adams matB_1 = (Mat_SeqAIJ*)mpimat_1->B->data; 357c8b0795cSMark F. Adams matA_2 = (Mat_SeqAIJ*)mpimat_2->A->data; 358c8b0795cSMark F. Adams matB_2 = (Mat_SeqAIJ*)mpimat_2->B->data; 359c8b0795cSMark F. Adams 360c8b0795cSMark F. Adams /* force compressed row storage for B matrix in AuxMat */ 361c8b0795cSMark F. Adams matB_1->compressedrow.check = PETSC_TRUE; 3622fa5cd67SKarl Rupp 363806fa848SBarry Smith ierr = MatCheckCompressedRow(mpimat_1->B,&matB_1->compressedrow,matB_1->i,Gmat_1->rmap->n,-1.0);CHKERRQ(ierr); 364c8b0795cSMark F. Adams 365c8b0795cSMark F. Adams ierr = PetscMalloc(nloc*sizeof(PetscInt), &lid_cprowID_1);CHKERRQ(ierr); 3660cbbd2e1SMark F. Adams for (lid = 0; lid < nloc; lid++) lid_cprowID_1[lid] = -1; 367c8b0795cSMark F. Adams for (ix=0; ix<matB_1->compressedrow.nrows; ix++) { 368c8b0795cSMark F. Adams PetscInt lid = matB_1->compressedrow.rindex[ix]; 369c8b0795cSMark F. Adams lid_cprowID_1[lid] = ix; 370c8b0795cSMark F. Adams } 371806fa848SBarry Smith } else { 372c8b0795cSMark F. Adams matA_1 = (Mat_SeqAIJ*)Gmat_1->data; 373c8b0795cSMark F. Adams matA_2 = (Mat_SeqAIJ*)Gmat_2->data; 3740298fd71SBarry Smith lid_cprowID_1 = NULL; 375c8b0795cSMark F. Adams } 37671959b99SBarry Smith if (!(matA_1 && !matA_1->compressedrow.use)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"!(matA_1 && !matA_1->compressedrow.use)"); 37771959b99SBarry Smith if (!(matB_1==0 || matB_1->compressedrow.use)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"!(matB_1==0 || matB_1->compressedrow.use)"); 37871959b99SBarry Smith if (!(matA_2 && !matA_2->compressedrow.use)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"!(matA_2 && !matA_2->compressedrow.use)"); 37971959b99SBarry Smith if (!(matB_2==0 || matB_2->compressedrow.use)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"!(matB_2==0 || matB_2->compressedrow.use)"); 380c8b0795cSMark F. Adams 381c8b0795cSMark F. Adams /* get state of locals and selected gid for deleted */ 382c8b0795cSMark F. Adams ierr = PetscMalloc(nloc*sizeof(NState), &lid_state);CHKERRQ(ierr); 3830cbbd2e1SMark F. Adams ierr = PetscMalloc(nloc*sizeof(PetscScalar), &lid_parent_gid);CHKERRQ(ierr); 384c8b0795cSMark F. Adams for (lid = 0; lid < nloc; lid++) { 3850cbbd2e1SMark F. Adams lid_parent_gid[lid] = -1.0; 386c8b0795cSMark F. Adams lid_state[lid] = DELETED; 387c8b0795cSMark F. Adams } 3880cbbd2e1SMark F. Adams 3890cbbd2e1SMark F. Adams /* set lid_state */ 3900cbbd2e1SMark F. Adams for (lid = 0; lid < nloc; lid++) { 39141b27cdeSMark F. Adams PetscCDPos pos; 392e78576d6SMark F. Adams ierr = PetscCDGetHeadPos(aggs_2,lid,&pos);CHKERRQ(ierr); 393e78576d6SMark F. Adams if (pos) { 394e78576d6SMark F. Adams PetscInt gid1; 3952fa5cd67SKarl Rupp 39671959b99SBarry Smith ierr = PetscLLNGetID(pos, &gid1);CHKERRQ(ierr); 39771959b99SBarry Smith if (gid1 != lid+my0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"gid1 %D != lid %D + my0 %D",gid1,lid,my0); 3980cbbd2e1SMark F. Adams lid_state[lid] = gid1; 399b43b03e9SMark F. Adams } 400b43b03e9SMark F. Adams } 4010cbbd2e1SMark F. Adams 4020cbbd2e1SMark F. Adams /* map local to selected local, DELETED means a ghost owns it */ 403c8b0795cSMark F. Adams for (lid=kk=0; lid<nloc; lid++) { 404c8b0795cSMark F. Adams NState state = lid_state[lid]; 405c8b0795cSMark F. Adams if (IS_SELECTED(state)) { 40641b27cdeSMark F. Adams PetscCDPos pos; 407e78576d6SMark F. Adams ierr = PetscCDGetHeadPos(aggs_2,lid,&pos);CHKERRQ(ierr); 408e78576d6SMark F. Adams while (pos) { 409e78576d6SMark F. Adams PetscInt gid1; 410ffc955d6SMark F. Adams ierr = PetscLLNGetID(pos, &gid1);CHKERRQ(ierr); 411e78576d6SMark F. Adams ierr = PetscCDGetNextPos(aggs_2,lid,&pos);CHKERRQ(ierr); 412e78576d6SMark F. Adams 4132fa5cd67SKarl Rupp if (gid1 >= my0 && gid1 < Iend) lid_parent_gid[gid1-my0] = (PetscScalar)(lid + my0); 414c8b0795cSMark F. Adams } 4150cbbd2e1SMark F. Adams } 4160cbbd2e1SMark F. Adams } 4170cbbd2e1SMark F. Adams /* get 'cpcol_1/2_state' & cpcol_2_par_orig - uses mpimat_1/2->lvec for temp space */ 418c8b0795cSMark F. Adams if (isMPI) { 419c8b0795cSMark F. Adams Vec tempVec; 420c8b0795cSMark F. Adams /* get 'cpcol_1_state' */ 421c8b0795cSMark F. Adams ierr = MatGetVecs(Gmat_1, &tempVec, 0);CHKERRQ(ierr); 422c8b0795cSMark F. Adams for (kk=0,j=my0; kk<nloc; kk++,j++) { 423c8b0795cSMark F. Adams PetscScalar v = (PetscScalar)lid_state[kk]; 424c8b0795cSMark F. Adams ierr = VecSetValues(tempVec, 1, &j, &v, INSERT_VALUES);CHKERRQ(ierr); 425c8b0795cSMark F. Adams } 426c8b0795cSMark F. Adams ierr = VecAssemblyBegin(tempVec);CHKERRQ(ierr); 427c8b0795cSMark F. Adams ierr = VecAssemblyEnd(tempVec);CHKERRQ(ierr); 428806fa848SBarry Smith ierr = VecScatterBegin(mpimat_1->Mvctx,tempVec, mpimat_1->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 429806fa848SBarry Smith ierr = VecScatterEnd(mpimat_1->Mvctx,tempVec, mpimat_1->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 430c8b0795cSMark F. Adams ierr = VecGetArray(mpimat_1->lvec, &cpcol_1_state);CHKERRQ(ierr); 431c8b0795cSMark F. Adams /* get 'cpcol_2_state' */ 432806fa848SBarry Smith ierr = VecScatterBegin(mpimat_2->Mvctx,tempVec, mpimat_2->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 433806fa848SBarry Smith ierr = VecScatterEnd(mpimat_2->Mvctx,tempVec, mpimat_2->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 434c8b0795cSMark F. Adams ierr = VecGetArray(mpimat_2->lvec, &cpcol_2_state);CHKERRQ(ierr); 4350cbbd2e1SMark F. Adams /* get 'cpcol_2_par_orig' */ 4360cbbd2e1SMark F. Adams for (kk=0,j=my0; kk<nloc; kk++,j++) { 4370cbbd2e1SMark F. Adams PetscScalar v = (PetscScalar)lid_parent_gid[kk]; 4380cbbd2e1SMark F. Adams ierr = VecSetValues(tempVec, 1, &j, &v, INSERT_VALUES);CHKERRQ(ierr); 4390cbbd2e1SMark F. Adams } 4400cbbd2e1SMark F. Adams ierr = VecAssemblyBegin(tempVec);CHKERRQ(ierr); 4410cbbd2e1SMark F. Adams ierr = VecAssemblyEnd(tempVec);CHKERRQ(ierr); 4420cbbd2e1SMark F. Adams ierr = VecDuplicate(mpimat_2->lvec, &ghost_par_orig2);CHKERRQ(ierr); 443806fa848SBarry Smith ierr = VecScatterBegin(mpimat_2->Mvctx,tempVec, ghost_par_orig2,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 444806fa848SBarry Smith ierr = VecScatterEnd(mpimat_2->Mvctx,tempVec, ghost_par_orig2,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 4450cbbd2e1SMark F. Adams ierr = VecGetArray(ghost_par_orig2, &cpcol_2_par_orig);CHKERRQ(ierr); 4460cbbd2e1SMark F. Adams 447c8b0795cSMark F. Adams ierr = VecDestroy(&tempVec);CHKERRQ(ierr); 448c8b0795cSMark F. Adams } /* ismpi */ 449c8b0795cSMark F. Adams 450c8b0795cSMark F. Adams /* doit */ 451c8b0795cSMark F. Adams for (lid=0; lid<nloc; lid++) { 452c8b0795cSMark F. Adams NState state = lid_state[lid]; 4530cbbd2e1SMark F. Adams if (IS_SELECTED(state)) { 4540cbbd2e1SMark F. Adams /* steal locals */ 455c8b0795cSMark F. Adams ii = matA_1->i; n = ii[lid+1] - ii[lid]; 456c8b0795cSMark F. Adams idx = matA_1->j + ii[lid]; 457c8b0795cSMark F. Adams for (j=0; j<n; j++) { 4580cbbd2e1SMark F. Adams PetscInt lidj = idx[j], sgid; 459c8b0795cSMark F. Adams NState statej = lid_state[lidj]; 4600cbbd2e1SMark F. Adams if (statej==DELETED && (sgid=(PetscInt)PetscRealPart(lid_parent_gid[lidj])) != lid+my0) { /* steal local */ 4610cbbd2e1SMark F. Adams lid_parent_gid[lidj] = (PetscScalar)(lid+my0); /* send this if sgid is not local */ 4620cbbd2e1SMark F. Adams if (sgid >= my0 && sgid < Iend) { /* I'm stealing this local from a local sgid */ 4630cbbd2e1SMark F. Adams PetscInt hav=0,slid=sgid-my0,gidj=lidj+my0; 4640298fd71SBarry Smith PetscCDPos pos,last=NULL; 465c8b0795cSMark F. Adams /* looking for local from local so id_llist_2 works */ 466e78576d6SMark F. Adams ierr = PetscCDGetHeadPos(aggs_2,slid,&pos);CHKERRQ(ierr); 467e78576d6SMark F. Adams while (pos) { 468e78576d6SMark F. Adams PetscInt gid; 469ffc955d6SMark F. Adams ierr = PetscLLNGetID(pos, &gid);CHKERRQ(ierr); 4700cbbd2e1SMark F. Adams if (gid == gidj) { 47171959b99SBarry Smith if (!last) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"last cannot be null"); 47241b27cdeSMark F. Adams ierr = PetscCDRemoveNextNode(aggs_2, slid, last);CHKERRQ(ierr); 47341b27cdeSMark F. Adams ierr = PetscCDAppendNode(aggs_2, lid, pos);CHKERRQ(ierr); 4740cbbd2e1SMark F. Adams hav = 1; 475c8b0795cSMark F. Adams break; 476806fa848SBarry Smith } else last = pos; 477e78576d6SMark F. Adams 478e78576d6SMark F. Adams ierr = PetscCDGetNextPos(aggs_2,slid,&pos);CHKERRQ(ierr); 479c8b0795cSMark F. Adams } 480c8b0795cSMark F. Adams if (hav!=1) { 48171959b99SBarry Smith if (!hav) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"failed to find adj in 'selected' lists - structurally unsymmetric matrix"); 482c666adbfSMark F. Adams SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"found node %d times???",hav); 483c8b0795cSMark F. Adams } 484806fa848SBarry Smith } else { /* I'm stealing this local, owned by a ghost */ 4852fa5cd67SKarl Rupp if (sgid != -1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Have un-symmetric graph (apparently). Use '-pc_gamg_sym_graph true' to symetrize the graph or '-pc_gamg_threshold 0.0' if the matrix is structurally symmetric."); 48641b27cdeSMark F. Adams ierr = PetscCDAppendID(aggs_2, lid, lidj+my0);CHKERRQ(ierr); 487c8b0795cSMark F. Adams } 488c8b0795cSMark F. Adams } 4890cbbd2e1SMark F. Adams } /* local neighbors */ 490806fa848SBarry Smith } else if (state == DELETED && lid_cprowID_1) { 4910cbbd2e1SMark F. Adams PetscInt sgidold = (PetscInt)PetscRealPart(lid_parent_gid[lid]); 492c8b0795cSMark F. Adams /* see if I have a selected ghost neighbor that will steal me */ 493c8b0795cSMark F. Adams if ((ix=lid_cprowID_1[lid]) != -1) { 494c8b0795cSMark F. Adams ii = matB_1->compressedrow.i; n = ii[ix+1] - ii[ix]; 495c8b0795cSMark F. Adams idx = matB_1->j + ii[ix]; 496c8b0795cSMark F. Adams for (j=0; j<n; j++) { 497c8b0795cSMark F. Adams PetscInt cpid = idx[j]; 498c8b0795cSMark F. Adams NState statej = (NState)PetscRealPart(cpcol_1_state[cpid]); 499c8b0795cSMark F. Adams if (IS_SELECTED(statej) && sgidold != (PetscInt)statej) { /* ghost will steal this, remove from my list */ 5000cbbd2e1SMark F. Adams lid_parent_gid[lid] = (PetscScalar)statej; /* send who selected */ 5010cbbd2e1SMark F. Adams if (sgidold>=my0 && sgidold<Iend) { /* this was mine */ 5020cbbd2e1SMark F. Adams PetscInt hav=0,oldslidj=sgidold-my0; 5030298fd71SBarry Smith PetscCDPos pos,last=NULL; 5040cbbd2e1SMark F. Adams /* remove from 'oldslidj' list */ 505e78576d6SMark F. Adams ierr = PetscCDGetHeadPos(aggs_2,oldslidj,&pos);CHKERRQ(ierr); 506e78576d6SMark F. Adams while (pos) { 507e78576d6SMark F. Adams PetscInt gid; 508ffc955d6SMark F. Adams ierr = PetscLLNGetID(pos, &gid);CHKERRQ(ierr); 5090cbbd2e1SMark F. Adams if (lid+my0 == gid) { 5100cbbd2e1SMark F. Adams /* id_llist_2[lastid] = id_llist_2[flid]; /\* remove lid from oldslidj list *\/ */ 51171959b99SBarry Smith if (!last) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"last cannot be null"); 51241b27cdeSMark F. Adams ierr = PetscCDRemoveNextNode(aggs_2, oldslidj, last);CHKERRQ(ierr); 5130cbbd2e1SMark F. Adams /* ghost (PetscScalar)statej will add this later */ 5140cbbd2e1SMark F. Adams hav = 1; 515c8b0795cSMark F. Adams break; 516806fa848SBarry Smith } else last = pos; 517e78576d6SMark F. Adams 518e78576d6SMark F. Adams ierr = PetscCDGetNextPos(aggs_2,oldslidj,&pos);CHKERRQ(ierr); 519c8b0795cSMark F. Adams } 520c8b0795cSMark F. Adams if (hav!=1) { 521c666adbfSMark F. Adams if (hav==0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"failed to find adj in 'selected' lists - structurally unsymmetric matrix"); 522c666adbfSMark F. Adams SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"found node %d times???",hav); 523c8b0795cSMark F. Adams } 524806fa848SBarry Smith } else { 5250cbbd2e1SMark F. Adams /* ghosts remove this later */ 5260cbbd2e1SMark F. Adams } 527c8b0795cSMark F. Adams } 528c8b0795cSMark F. Adams } 529c8b0795cSMark F. Adams } 530c8b0795cSMark F. Adams } /* selected/deleted */ 531c8b0795cSMark F. Adams } /* node loop */ 532c8b0795cSMark F. Adams 533c8b0795cSMark F. Adams if (isMPI) { 5340cbbd2e1SMark F. Adams PetscScalar *cpcol_2_parent,*cpcol_2_gid; 5350cbbd2e1SMark F. Adams Vec tempVec,ghostgids2,ghostparents2; 5360cbbd2e1SMark F. Adams PetscInt cpid,nghost_2; 5370cbbd2e1SMark F. Adams GAMGHashTable gid_cpid; 538c8b0795cSMark F. Adams 5390cbbd2e1SMark F. Adams ierr = VecGetSize(mpimat_2->lvec, &nghost_2);CHKERRQ(ierr); 540c8b0795cSMark F. Adams ierr = MatGetVecs(Gmat_2, &tempVec, 0);CHKERRQ(ierr); 5410cbbd2e1SMark F. Adams 5420cbbd2e1SMark F. Adams /* get 'cpcol_2_parent' */ 543c8b0795cSMark F. Adams for (kk=0,j=my0; kk<nloc; kk++,j++) { 5440cbbd2e1SMark F. Adams ierr = VecSetValues(tempVec, 1, &j, &lid_parent_gid[kk], INSERT_VALUES);CHKERRQ(ierr); 545c8b0795cSMark F. Adams } 546c8b0795cSMark F. Adams ierr = VecAssemblyBegin(tempVec);CHKERRQ(ierr); 547c8b0795cSMark F. Adams ierr = VecAssemblyEnd(tempVec);CHKERRQ(ierr); 5480cbbd2e1SMark F. Adams ierr = VecDuplicate(mpimat_2->lvec, &ghostparents2);CHKERRQ(ierr); 549806fa848SBarry Smith ierr = VecScatterBegin(mpimat_2->Mvctx,tempVec, ghostparents2,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 550806fa848SBarry Smith ierr = VecScatterEnd(mpimat_2->Mvctx,tempVec, ghostparents2,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 5510cbbd2e1SMark F. Adams ierr = VecGetArray(ghostparents2, &cpcol_2_parent);CHKERRQ(ierr); 5520cbbd2e1SMark F. Adams 5530cbbd2e1SMark F. Adams /* get 'cpcol_2_gid' */ 5540cbbd2e1SMark F. Adams for (kk=0,j=my0; kk<nloc; kk++,j++) { 5550cbbd2e1SMark F. Adams PetscScalar v = (PetscScalar)j; 5560cbbd2e1SMark F. Adams ierr = VecSetValues(tempVec, 1, &j, &v, INSERT_VALUES);CHKERRQ(ierr); 5570cbbd2e1SMark F. Adams } 5580cbbd2e1SMark F. Adams ierr = VecAssemblyBegin(tempVec);CHKERRQ(ierr); 5590cbbd2e1SMark F. Adams ierr = VecAssemblyEnd(tempVec);CHKERRQ(ierr); 5600cbbd2e1SMark F. Adams ierr = VecDuplicate(mpimat_2->lvec, &ghostgids2);CHKERRQ(ierr); 561806fa848SBarry Smith ierr = VecScatterBegin(mpimat_2->Mvctx,tempVec, ghostgids2,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 562806fa848SBarry Smith ierr = VecScatterEnd(mpimat_2->Mvctx,tempVec, ghostgids2,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 5630cbbd2e1SMark F. Adams ierr = VecGetArray(ghostgids2, &cpcol_2_gid);CHKERRQ(ierr); 5640cbbd2e1SMark F. Adams 565c8b0795cSMark F. Adams ierr = VecDestroy(&tempVec);CHKERRQ(ierr); 566c8b0795cSMark F. Adams 5670cbbd2e1SMark F. Adams /* look for deleted ghosts and add to table */ 568f10ff945SMark F. Adams ierr = GAMGTableCreate(2*nghost_2+1, &gid_cpid);CHKERRQ(ierr); 5690cbbd2e1SMark F. Adams for (cpid = 0; cpid < nghost_2; cpid++) { 5700cbbd2e1SMark F. Adams NState state = (NState)PetscRealPart(cpcol_2_state[cpid]); 5710cbbd2e1SMark F. Adams if (state==DELETED) { 5720cbbd2e1SMark F. Adams PetscInt sgid_new = (PetscInt)PetscRealPart(cpcol_2_parent[cpid]); 5730cbbd2e1SMark F. Adams PetscInt sgid_old = (PetscInt)PetscRealPart(cpcol_2_par_orig[cpid]); 5740cbbd2e1SMark F. Adams if (sgid_old == -1 && sgid_new != -1) { 5750cbbd2e1SMark F. Adams PetscInt gid = (PetscInt)PetscRealPart(cpcol_2_gid[cpid]); 5760cbbd2e1SMark F. Adams ierr = GAMGTableAdd(&gid_cpid, gid, cpid);CHKERRQ(ierr); 5770cbbd2e1SMark F. Adams } 5780cbbd2e1SMark F. Adams } 5790cbbd2e1SMark F. Adams } 580c8b0795cSMark F. Adams 5810cbbd2e1SMark F. Adams /* look for deleted ghosts and see if they moved - remove it */ 582c8b0795cSMark F. Adams for (lid=0; lid<nloc; lid++) { 583c8b0795cSMark F. Adams NState state = lid_state[lid]; 584c8b0795cSMark F. Adams if (IS_SELECTED(state)) { 5850298fd71SBarry Smith PetscCDPos pos,last=NULL; 586c8b0795cSMark F. Adams /* look for deleted ghosts and see if they moved */ 587e78576d6SMark F. Adams ierr = PetscCDGetHeadPos(aggs_2,lid,&pos);CHKERRQ(ierr); 588e78576d6SMark F. Adams while (pos) { 589e78576d6SMark F. Adams PetscInt gid; 590ffc955d6SMark F. Adams ierr = PetscLLNGetID(pos, &gid);CHKERRQ(ierr); 591e78576d6SMark F. Adams 5920cbbd2e1SMark F. Adams if (gid < my0 || gid >= Iend) { 5930cbbd2e1SMark F. Adams ierr = GAMGTableFind(&gid_cpid, gid, &cpid);CHKERRQ(ierr); 5940cbbd2e1SMark F. Adams if (cpid != -1) { 5950cbbd2e1SMark F. Adams /* a moved ghost - */ 5960cbbd2e1SMark F. Adams /* id_llist_2[lastid] = id_llist_2[flid]; /\* remove 'flid' from list *\/ */ 59741b27cdeSMark F. Adams ierr = PetscCDRemoveNextNode(aggs_2, lid, last);CHKERRQ(ierr); 598806fa848SBarry Smith } else last = pos; 599806fa848SBarry Smith } else last = pos; 600e78576d6SMark F. Adams 601e78576d6SMark F. Adams ierr = PetscCDGetNextPos(aggs_2,lid,&pos);CHKERRQ(ierr); 602c8b0795cSMark F. Adams } /* loop over list of deleted */ 603c8b0795cSMark F. Adams } /* selected */ 604c8b0795cSMark F. Adams } 6050cbbd2e1SMark F. Adams ierr = GAMGTableDestroy(&gid_cpid);CHKERRQ(ierr); 606c8b0795cSMark F. Adams 6070cbbd2e1SMark F. Adams /* look at ghosts, see if they changed - and it */ 6080cbbd2e1SMark F. Adams for (cpid = 0; cpid < nghost_2; cpid++) { 6090cbbd2e1SMark F. Adams PetscInt sgid_new = (PetscInt)PetscRealPart(cpcol_2_parent[cpid]); 6100cbbd2e1SMark F. Adams if (sgid_new >= my0 && sgid_new < Iend) { /* this is mine */ 6110cbbd2e1SMark F. Adams PetscInt gid = (PetscInt)PetscRealPart(cpcol_2_gid[cpid]); 6120cbbd2e1SMark F. Adams PetscInt slid_new=sgid_new-my0,hav=0; 61341b27cdeSMark F. Adams PetscCDPos pos; 6140cbbd2e1SMark F. Adams /* search for this gid to see if I have it */ 615e78576d6SMark F. Adams ierr = PetscCDGetHeadPos(aggs_2,slid_new,&pos);CHKERRQ(ierr); 616e78576d6SMark F. Adams while (pos) { 617e78576d6SMark F. Adams PetscInt gidj; 618ffc955d6SMark F. Adams ierr = PetscLLNGetID(pos, &gidj);CHKERRQ(ierr); 619e78576d6SMark F. Adams ierr = PetscCDGetNextPos(aggs_2,slid_new,&pos);CHKERRQ(ierr); 620e78576d6SMark F. Adams 6210cbbd2e1SMark F. Adams if (gidj == gid) { hav = 1; break; } 622c8b0795cSMark F. Adams } 623c8b0795cSMark F. Adams if (hav != 1) { 624ffc955d6SMark F. Adams /* insert 'flidj' into head of llist */ 62541b27cdeSMark F. Adams ierr = PetscCDAppendID(aggs_2, slid_new, gid);CHKERRQ(ierr); 626c8b0795cSMark F. Adams } 627c8b0795cSMark F. Adams } 628c8b0795cSMark F. Adams } 629c8b0795cSMark F. Adams 6300cbbd2e1SMark F. Adams ierr = VecRestoreArray(mpimat_1->lvec, &cpcol_1_state);CHKERRQ(ierr); 6310cbbd2e1SMark F. Adams ierr = VecRestoreArray(mpimat_2->lvec, &cpcol_2_state);CHKERRQ(ierr); 6320cbbd2e1SMark F. Adams ierr = VecRestoreArray(ghostparents2, &cpcol_2_parent);CHKERRQ(ierr); 6330cbbd2e1SMark F. Adams ierr = VecRestoreArray(ghostgids2, &cpcol_2_gid);CHKERRQ(ierr); 634c8b0795cSMark F. Adams ierr = PetscFree(lid_cprowID_1);CHKERRQ(ierr); 6350cbbd2e1SMark F. Adams ierr = VecDestroy(&ghostgids2);CHKERRQ(ierr); 6360cbbd2e1SMark F. Adams ierr = VecDestroy(&ghostparents2);CHKERRQ(ierr); 6370cbbd2e1SMark F. Adams ierr = VecDestroy(&ghost_par_orig2);CHKERRQ(ierr); 638c8b0795cSMark F. Adams } 639c8b0795cSMark F. Adams 6400cbbd2e1SMark F. Adams ierr = PetscFree(lid_parent_gid);CHKERRQ(ierr); 641c8b0795cSMark F. Adams ierr = PetscFree(lid_state);CHKERRQ(ierr); 642c8b0795cSMark F. Adams PetscFunctionReturn(0); 643c8b0795cSMark F. Adams } 6442e68589bSMark F. Adams 6452e68589bSMark F. Adams /* -------------------------------------------------------------------------- */ 6462e68589bSMark F. Adams /* 647a2f3521dSMark F. Adams PCSetData_AGG - called if data is not set with PCSetCoordinates. 648a2f3521dSMark F. Adams Looks in Mat for near null space. 649a2f3521dSMark F. Adams Does not work for Stokes 6502e68589bSMark F. Adams 6512e68589bSMark F. Adams Input Parameter: 6522e68589bSMark F. Adams . pc - 653a2f3521dSMark F. Adams . a_A - matrix to get (near) null space out of. 6542e68589bSMark F. Adams */ 6552e68589bSMark F. Adams #undef __FUNCT__ 6562e68589bSMark F. Adams #define __FUNCT__ "PCSetData_AGG" 657b8cd405aSMark F. Adams PetscErrorCode PCSetData_AGG(PC pc, Mat a_A) 6582e68589bSMark F. Adams { 6592e68589bSMark F. Adams PetscErrorCode ierr; 660b8cd405aSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 661b8cd405aSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 662b8cd405aSMark F. Adams MatNullSpace mnull; 663b8cd405aSMark F. Adams 6642e68589bSMark F. Adams PetscFunctionBegin; 665b8cd405aSMark F. Adams ierr = MatGetNearNullSpace(a_A, &mnull);CHKERRQ(ierr); 666b8cd405aSMark F. Adams if (!mnull) { 667a2f3521dSMark F. Adams PetscInt bs,NN,MM; 6689d1b15c3SMark F. Adams ierr = MatGetBlockSize(a_A, &bs);CHKERRQ(ierr); 66971959b99SBarry Smith ierr = MatGetLocalSize(a_A, &MM, &NN);CHKERRQ(ierr); 67071959b99SBarry Smith if (MM % bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"MM %D must be divisible by bs %D",MM,bs); 6710298fd71SBarry Smith ierr = PCSetCoordinates_AGG(pc, bs, MM/bs, NULL);CHKERRQ(ierr); 672806fa848SBarry Smith } else { 673b8cd405aSMark F. Adams PetscReal *nullvec; 674b8cd405aSMark F. Adams PetscBool has_const; 675b8cd405aSMark F. Adams PetscInt i,j,mlocal,nvec,bs; 676b8cd405aSMark F. Adams const Vec *vecs; const PetscScalar *v; 6770298fd71SBarry Smith ierr = MatGetLocalSize(a_A,&mlocal,NULL);CHKERRQ(ierr); 678b8cd405aSMark F. Adams ierr = MatNullSpaceGetVecs(mnull, &has_const, &nvec, &vecs);CHKERRQ(ierr); 6798caf3d72SBarry Smith ierr = PetscMalloc((nvec+!!has_const)*mlocal*sizeof(*nullvec),&nullvec);CHKERRQ(ierr); 680b8cd405aSMark F. Adams if (has_const) for (i=0; i<mlocal; i++) nullvec[i] = 1.0; 681b8cd405aSMark F. Adams for (i=0; i<nvec; i++) { 682b8cd405aSMark F. Adams ierr = VecGetArrayRead(vecs[i],&v);CHKERRQ(ierr); 683b8cd405aSMark F. Adams for (j=0; j<mlocal; j++) nullvec[(i+!!has_const)*mlocal + j] = PetscRealPart(v[j]); 684b8cd405aSMark F. Adams ierr = VecRestoreArrayRead(vecs[i],&v);CHKERRQ(ierr); 685b8cd405aSMark F. Adams } 686b8cd405aSMark F. Adams pc_gamg->data = nullvec; 687b8cd405aSMark F. Adams pc_gamg->data_cell_cols = (nvec+!!has_const); 6882fa5cd67SKarl Rupp 689a2f3521dSMark F. Adams ierr = MatGetBlockSize(a_A, &bs);CHKERRQ(ierr); /* this does not work for Stokes */ 6902fa5cd67SKarl Rupp 691b8cd405aSMark F. Adams pc_gamg->data_cell_rows = bs; 692b8cd405aSMark F. Adams } 6932e68589bSMark F. Adams PetscFunctionReturn(0); 6942e68589bSMark F. Adams } 6952e68589bSMark F. Adams 6962e68589bSMark F. Adams /* -------------------------------------------------------------------------- */ 6972e68589bSMark F. Adams /* 6982e68589bSMark F. Adams formProl0 6992e68589bSMark F. Adams 7002e68589bSMark F. Adams Input Parameter: 7010cbbd2e1SMark F. Adams . agg_llists - list of arrays with aggregates 7022e68589bSMark F. Adams . bs - block size 7030cbbd2e1SMark F. Adams . nSAvec - column bs of new P 7040cbbd2e1SMark F. Adams . my0crs - global index of start of locals 7052e68589bSMark F. Adams . data_stride - bs*(nloc nodes + ghost nodes) 7062e68589bSMark F. Adams . data_in[data_stride*nSAvec] - local data on fine grid 7072e68589bSMark F. Adams . flid_fgid[data_stride/bs] - make local to global IDs, includes ghosts in 'locals_llist' 7082e68589bSMark F. Adams Output Parameter: 7092e68589bSMark F. Adams . a_data_out - in with fine grid data (w/ghosts), out with coarse grid data 7102e68589bSMark F. Adams . a_Prol - prolongation operator 7112e68589bSMark F. Adams */ 7122e68589bSMark F. Adams #undef __FUNCT__ 7132e68589bSMark F. Adams #define __FUNCT__ "formProl0" 7140cbbd2e1SMark F. Adams static PetscErrorCode formProl0(const PetscCoarsenData *agg_llists, /* list from selected vertices of aggregate unselected vertices */ 7150cbbd2e1SMark F. Adams const PetscInt bs, /* (row) block size */ 7160cbbd2e1SMark F. Adams const PetscInt nSAvec, /* column bs */ 7170cbbd2e1SMark F. Adams const PetscInt my0crs, /* global index of start of locals */ 7180cbbd2e1SMark F. Adams const PetscInt data_stride, /* (nloc+nghost)*bs */ 7190cbbd2e1SMark F. Adams PetscReal data_in[], /* [data_stride][nSAvec] */ 7200cbbd2e1SMark F. Adams const PetscInt flid_fgid[], /* [data_stride/bs] */ 7212e68589bSMark F. Adams PetscReal **a_data_out, 7221147fc2aSKarl Rupp Mat a_Prol) /* prolongation operator (output)*/ 7232e68589bSMark F. Adams { 7242e68589bSMark F. Adams PetscErrorCode ierr; 7250cbbd2e1SMark F. Adams PetscInt Istart,my0,Iend,nloc,clid,flid,aggID,kk,jj,ii,mm,ndone,nSelected,minsz,nghosts,out_data_stride; 7263b4367a7SBarry Smith MPI_Comm comm; 727c5df96a5SBarry Smith PetscMPIInt rank, size; 7282e68589bSMark F. Adams PetscReal *out_data; 72941b27cdeSMark F. Adams PetscCDPos pos; 7300cbbd2e1SMark F. Adams GAMGHashTable fgid_flid; 7310cbbd2e1SMark F. Adams 732797e13b7SMark F. Adams /* #define OUT_AGGS */ 733519f805aSKarl Rupp #if defined(OUT_AGGS) 7340298fd71SBarry Smith static PetscInt llev = 0; char fname[32]; FILE *file = NULL; PetscInt pM; 7359057884aSMark F. Adams #endif 7362e68589bSMark F. Adams 7372e68589bSMark F. Adams PetscFunctionBegin; 7383b4367a7SBarry Smith ierr = PetscObjectGetComm((PetscObject)a_Prol,&comm);CHKERRQ(ierr); 7393b4367a7SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 7403b4367a7SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 7412e68589bSMark F. Adams ierr = MatGetOwnershipRange(a_Prol, &Istart, &Iend);CHKERRQ(ierr); 74271959b99SBarry Smith nloc = (Iend-Istart)/bs; my0 = Istart/bs; 74371959b99SBarry Smith if ((Iend-Istart) % bs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Iend %D - Istart %d must be divisible by bs %D",Iend,Istart,bs); 7440cbbd2e1SMark F. Adams Iend /= bs; 7450cbbd2e1SMark F. Adams nghosts = data_stride/bs - nloc; 7462e68589bSMark F. Adams 747f10ff945SMark F. Adams ierr = GAMGTableCreate(2*nghosts+1, &fgid_flid);CHKERRQ(ierr); 7480cbbd2e1SMark F. Adams for (kk=0; kk<nghosts; kk++) { 7490cbbd2e1SMark F. Adams ierr = GAMGTableAdd(&fgid_flid, flid_fgid[nloc+kk], nloc+kk);CHKERRQ(ierr); 7502e68589bSMark F. Adams } 7512e68589bSMark F. Adams 752519f805aSKarl Rupp #if defined(OUT_AGGS) 753c5df96a5SBarry Smith sprintf(fname,"aggs_%d_%d.m",llev++,rank); 7542fa5cd67SKarl Rupp if (llev==1) file = fopen(fname,"w"); 7550cbbd2e1SMark F. Adams MatGetSize(a_Prol, &pM, &jj); 7560cbbd2e1SMark F. Adams #endif 7570cbbd2e1SMark F. Adams 7580cbbd2e1SMark F. Adams /* count selected -- same as number of cols of P */ 7590cbbd2e1SMark F. Adams for (nSelected=mm=0; mm<nloc; mm++) { 760e78576d6SMark F. Adams PetscBool ise; 761e78576d6SMark F. Adams ierr = PetscCDEmptyAt(agg_llists, mm, &ise);CHKERRQ(ierr); 762e78576d6SMark F. Adams if (!ise) nSelected++; 7630cbbd2e1SMark F. Adams } 7640cbbd2e1SMark F. Adams ierr = MatGetOwnershipRangeColumn(a_Prol, &ii, &jj);CHKERRQ(ierr); 76571959b99SBarry Smith if ((ii/nSAvec) != my0crs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"ii %D /nSAvec %D != my0crs %D",ii,nSAvec,my0crs); 76671959b99SBarry Smith if (nSelected != (jj-ii)/nSAvec) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_PLIB,"nSelected %D != (jj %D - ii %D)/nSAvec %D",nSelected,jj,ii,nSAvec); 7670cbbd2e1SMark F. Adams 7682e68589bSMark F. Adams /* aloc space for coarse point data (output) */ 7690cbbd2e1SMark F. Adams out_data_stride = nSelected*nSAvec; 7702fa5cd67SKarl Rupp 7710cbbd2e1SMark F. Adams ierr = PetscMalloc(out_data_stride*nSAvec*sizeof(PetscReal), &out_data);CHKERRQ(ierr); 7722fa5cd67SKarl Rupp for (ii=0;ii<out_data_stride*nSAvec;ii++) out_data[ii]=1.e300; 7730cbbd2e1SMark F. Adams *a_data_out = out_data; /* output - stride nSelected*nSAvec */ 7742e68589bSMark F. Adams 7752e68589bSMark F. Adams /* find points and set prolongation */ 776c8b0795cSMark F. Adams minsz = 100; 7772e68589bSMark F. Adams ndone = 0; 7780cbbd2e1SMark F. Adams for (mm = clid = 0; mm < nloc; mm++) { 779e78576d6SMark F. Adams ierr = PetscCDSizeAt(agg_llists, mm, &jj);CHKERRQ(ierr); 780e78576d6SMark F. Adams if (jj > 0) { 7810cbbd2e1SMark F. Adams const PetscInt lid = mm, cgid = my0crs + clid; 7820cbbd2e1SMark F. Adams PetscInt cids[100]; /* max bs */ 7830cbbd2e1SMark F. Adams PetscBLASInt asz =jj,M=asz*bs,N=nSAvec,INFO; 7842e68589bSMark F. Adams PetscBLASInt Mdata=M+((N-M>0) ? N-M : 0),LDA=Mdata,LWORK=N*bs; 7852e68589bSMark F. Adams PetscScalar *qqc,*qqr,*TAU,*WORK; 7862e68589bSMark F. Adams PetscInt *fids; 78765d7b583SSatish Balay PetscReal *data; 7880cbbd2e1SMark F. Adams /* count agg */ 7890cbbd2e1SMark F. Adams if (asz<minsz) minsz = asz; 7900cbbd2e1SMark F. Adams 7910cbbd2e1SMark F. Adams /* get block */ 7922e68589bSMark F. Adams ierr = PetscMalloc((Mdata*N)*sizeof(PetscScalar), &qqc);CHKERRQ(ierr); 7932e68589bSMark F. Adams ierr = PetscMalloc((M*N)*sizeof(PetscScalar), &qqr);CHKERRQ(ierr); 7942e68589bSMark F. Adams ierr = PetscMalloc(N*sizeof(PetscScalar), &TAU);CHKERRQ(ierr); 7952e68589bSMark F. Adams ierr = PetscMalloc(LWORK*sizeof(PetscScalar), &WORK);CHKERRQ(ierr); 7962e68589bSMark F. Adams ierr = PetscMalloc(M*sizeof(PetscInt), &fids);CHKERRQ(ierr); 7972e68589bSMark F. Adams 7982e68589bSMark F. Adams aggID = 0; 799e78576d6SMark F. Adams ierr = PetscCDGetHeadPos(agg_llists,lid,&pos);CHKERRQ(ierr); 800e78576d6SMark F. Adams while (pos) { 801e78576d6SMark F. Adams PetscInt gid1; 802ffc955d6SMark F. Adams ierr = PetscLLNGetID(pos, &gid1);CHKERRQ(ierr); 803e78576d6SMark F. Adams ierr = PetscCDGetNextPos(agg_llists,lid,&pos);CHKERRQ(ierr); 804e78576d6SMark F. Adams 8050cbbd2e1SMark F. Adams if (gid1 >= my0 && gid1 < Iend) flid = gid1 - my0; 8060cbbd2e1SMark F. Adams else { 8070cbbd2e1SMark F. Adams ierr = GAMGTableFind(&fgid_flid, gid1, &flid);CHKERRQ(ierr); 80871959b99SBarry Smith if (flid < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cannot find gid1 in table"); 8090cbbd2e1SMark F. Adams } 8102e68589bSMark F. Adams /* copy in B_i matrix - column oriented */ 81165d7b583SSatish Balay data = &data_in[flid*bs]; 8122e68589bSMark F. Adams for (kk = ii = 0; ii < bs; ii++) { 8132e68589bSMark F. Adams for (jj = 0; jj < N; jj++) { 8140cbbd2e1SMark F. Adams PetscReal d = data[jj*data_stride + ii]; 8150cbbd2e1SMark F. Adams qqc[jj*Mdata + aggID*bs + ii] = d; 8162e68589bSMark F. Adams } 8172e68589bSMark F. Adams } 818519f805aSKarl Rupp #if defined(OUT_AGGS) 819b2a4f308SMark F. Adams if (llev==1) { 8209057884aSMark F. Adams char str[] = "plot(%e,%e,'r*'), hold on,\n", col[] = "rgbkmc", sim[] = "*os+h>d<vx^"; 8210cbbd2e1SMark F. Adams PetscInt MM,pi,pj; 822c5df96a5SBarry Smith str[12] = col[(clid+17*rank)%6]; str[13] = sim[(clid+17*rank)%11]; 823f7620de1SMatthew G Knepley MM = (PetscInt)(PetscSqrtReal((PetscReal)pM)); 8240cbbd2e1SMark F. Adams pj = gid1/MM; pi = gid1%MM; 825b2a4f308SMark F. Adams fprintf(file,str,(double)pi,(double)pj); 826b2a4f308SMark F. Adams /* fprintf(file,str,data[2*data_stride+1],-data[2*data_stride]); */ 8279057884aSMark F. Adams } 8289057884aSMark F. Adams #endif 8292e68589bSMark F. Adams /* set fine IDs */ 8302e68589bSMark F. Adams for (kk=0; kk<bs; kk++) fids[aggID*bs + kk] = flid_fgid[flid]*bs + kk; 8312e68589bSMark F. Adams 8322e68589bSMark F. Adams aggID++; 8330cbbd2e1SMark F. Adams } 8342e68589bSMark F. Adams 8352e68589bSMark F. Adams /* pad with zeros */ 8362e68589bSMark F. Adams for (ii = asz*bs; ii < Mdata; ii++) { 8372e68589bSMark F. Adams for (jj = 0; jj < N; jj++, kk++) { 8382e68589bSMark F. Adams qqc[jj*Mdata + ii] = .0; 8392e68589bSMark F. Adams } 8402e68589bSMark F. Adams } 8412e68589bSMark F. Adams 8422e68589bSMark F. Adams ndone += aggID; 8432e68589bSMark F. Adams /* QR */ 84484df3f90SSatish Balay ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 845*8b83055fSJed Brown PetscStackCallBLAS("LAPACKgeqrf",LAPACKgeqrf_(&Mdata, &N, qqc, &LDA, TAU, WORK, &LWORK, &INFO)); 84684df3f90SSatish Balay ierr = PetscFPTrapPop();CHKERRQ(ierr); 847d23427c4SJed Brown if (INFO != 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"xGEQRF error"); 8482e68589bSMark F. Adams /* get R - column oriented - output B_{i+1} */ 8492e68589bSMark F. Adams { 8502e68589bSMark F. Adams PetscReal *data = &out_data[clid*nSAvec]; 8512e68589bSMark F. Adams for (jj = 0; jj < nSAvec; jj++) { 8522e68589bSMark F. Adams for (ii = 0; ii < nSAvec; ii++) { 85371959b99SBarry Smith if (data[jj*out_data_stride + ii] != 1.e300) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"data[jj*out_data_stride + ii] != 1.e300"); 8540cbbd2e1SMark F. Adams if (ii <= jj) data[jj*out_data_stride + ii] = PetscRealPart(qqc[jj*Mdata + ii]); 8550cbbd2e1SMark F. Adams else data[jj*out_data_stride + ii] = 0.; 8562e68589bSMark F. Adams } 8572e68589bSMark F. Adams } 8582e68589bSMark F. Adams } 8592e68589bSMark F. Adams 8602e68589bSMark F. Adams /* get Q - row oriented */ 861*8b83055fSJed Brown PetscStackCallBLAS("LAPACKungqr",LAPACKungqr_(&Mdata, &N, &N, qqc, &LDA, TAU, WORK, &LWORK, &INFO)); 862c666adbfSMark F. Adams if (INFO != 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"xORGQR error arg %d",-INFO); 8632e68589bSMark F. Adams 8642e68589bSMark F. Adams for (ii = 0; ii < M; ii++) { 8652e68589bSMark F. Adams for (jj = 0; jj < N; jj++) { 8662e68589bSMark F. Adams qqr[N*ii + jj] = qqc[jj*Mdata + ii]; 8672e68589bSMark F. Adams } 8682e68589bSMark F. Adams } 8692e68589bSMark F. Adams 8702e68589bSMark F. Adams /* add diagonal block of P0 */ 871c8b0795cSMark F. Adams for (kk=0; kk<N; kk++) { 872c8b0795cSMark F. Adams cids[kk] = N*cgid + kk; /* global col IDs in P0 */ 873c8b0795cSMark F. Adams } 8742e68589bSMark F. Adams ierr = MatSetValues(a_Prol,M,fids,N,cids,qqr,INSERT_VALUES);CHKERRQ(ierr); 8752e68589bSMark F. Adams 8762e68589bSMark F. Adams ierr = PetscFree(qqc);CHKERRQ(ierr); 8772e68589bSMark F. Adams ierr = PetscFree(qqr);CHKERRQ(ierr); 8782e68589bSMark F. Adams ierr = PetscFree(TAU);CHKERRQ(ierr); 8792e68589bSMark F. Adams ierr = PetscFree(WORK);CHKERRQ(ierr); 8802e68589bSMark F. Adams ierr = PetscFree(fids);CHKERRQ(ierr); 881b43b03e9SMark F. Adams clid++; 8820cbbd2e1SMark F. Adams } /* coarse agg */ 8830cbbd2e1SMark F. Adams } /* for all fine nodes */ 8840cbbd2e1SMark F. Adams ierr = MatAssemblyBegin(a_Prol,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8850cbbd2e1SMark F. Adams ierr = MatAssemblyEnd(a_Prol,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8862e68589bSMark F. Adams 8873b4367a7SBarry Smith /* ierr = MPI_Allreduce(&ndone, &ii, 1, MPIU_INT, MPIU_SUM, comm); */ 8882e68589bSMark F. Adams /* MatGetSize(a_Prol, &kk, &jj); */ 8893b4367a7SBarry Smith /* ierr = MPI_Allreduce(&minsz, &jj, 1, MPIU_INT, MPIU_MIN, comm); */ 8903b4367a7SBarry Smith /* PetscPrintf(comm," **** [%d]%s %d total done, %d nodes (%d local done), min agg. size = %d\n",rank,__FUNCT__,ii,kk/bs,ndone,jj); */ 8912e68589bSMark F. Adams 892519f805aSKarl Rupp #if defined(OUT_AGGS) 893b2a4f308SMark F. Adams if (llev==1) fclose(file); 8949057884aSMark F. Adams #endif 8950cbbd2e1SMark F. Adams ierr = GAMGTableDestroy(&fgid_flid);CHKERRQ(ierr); 8962e68589bSMark F. Adams PetscFunctionReturn(0); 8972e68589bSMark F. Adams } 8982e68589bSMark F. Adams 8992e68589bSMark F. Adams /* -------------------------------------------------------------------------- */ 9002e68589bSMark F. Adams /* 901c8b0795cSMark F. Adams PCGAMGgraph_AGG 9022e68589bSMark F. Adams 9032e68589bSMark F. Adams Input Parameter: 9042e68589bSMark F. Adams . pc - this 9052e68589bSMark F. Adams . Amat - matrix on this fine level 9062e68589bSMark F. Adams Output Parameter: 907c8b0795cSMark F. Adams . a_Gmat - 9082e68589bSMark F. Adams */ 9092e68589bSMark F. Adams #undef __FUNCT__ 910c8b0795cSMark F. Adams #define __FUNCT__ "PCGAMGgraph_AGG" 9112fa5cd67SKarl Rupp PetscErrorCode PCGAMGgraph_AGG(PC pc,const Mat Amat,Mat *a_Gmat) 912c8b0795cSMark F. Adams { 913c8b0795cSMark F. Adams PetscErrorCode ierr; 914c8b0795cSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 915c8b0795cSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 916c8b0795cSMark F. Adams const PetscInt verbose = pc_gamg->verbose; 917c8b0795cSMark F. Adams const PetscReal vfilter = pc_gamg->threshold; 918c8b0795cSMark F. Adams PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx; 919c5df96a5SBarry Smith PetscMPIInt rank,size; 920e0940f08SMark F. Adams Mat Gmat; 9213b4367a7SBarry Smith MPI_Comm comm; 92267744fedSMark F. Adams PetscBool /* set,flg , */ symm; 923c8b0795cSMark F. Adams 924c8b0795cSMark F. Adams PetscFunctionBegin; 9253b4367a7SBarry Smith ierr = PetscObjectGetComm((PetscObject)Amat,&comm);CHKERRQ(ierr); 9260cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG 9270cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(PC_GAMGGgraph_AGG,0,0,0,0);CHKERRQ(ierr); 9280cbbd2e1SMark F. Adams #endif 9293b4367a7SBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 9303b4367a7SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 931c8b0795cSMark F. Adams 93267744fedSMark F. Adams /* ierr = MatIsSymmetricKnown(Amat, &set, &flg);CHKERRQ(ierr); || !(set && flg) -- this causes lot of symm calls */ 933c666adbfSMark F. Adams symm = (PetscBool)(pc_gamg_agg->sym_graph); /* && !pc_gamg_agg->square_graph; */ 9340cbbd2e1SMark F. Adams 9352d7fac45SMark F. Adams ierr = PCGAMGCreateGraph(Amat, &Gmat);CHKERRQ(ierr); 9362d7fac45SMark F. Adams ierr = PCGAMGFilterGraph(&Gmat, vfilter, symm, verbose);CHKERRQ(ierr); 937c8b0795cSMark F. Adams 938e0940f08SMark F. Adams *a_Gmat = Gmat; 939c8b0795cSMark F. Adams 9400cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG 9410cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(PC_GAMGGgraph_AGG,0,0,0,0);CHKERRQ(ierr); 9420cbbd2e1SMark F. Adams #endif 943c8b0795cSMark F. Adams PetscFunctionReturn(0); 944c8b0795cSMark F. Adams } 945c8b0795cSMark F. Adams 946c8b0795cSMark F. Adams /* -------------------------------------------------------------------------- */ 947c8b0795cSMark F. Adams /* 948b43b03e9SMark F. Adams PCGAMGCoarsen_AGG 949c8b0795cSMark F. Adams 950c8b0795cSMark F. Adams Input Parameter: 951e0940f08SMark F. Adams . a_pc - this 952e0940f08SMark F. Adams Input/Output Parameter: 9530cbbd2e1SMark F. Adams . a_Gmat1 - graph on this fine level - coarsening can change this (squares it) 954c8b0795cSMark F. Adams Output Parameter: 9550cbbd2e1SMark F. Adams . agg_lists - list of aggregates 956c8b0795cSMark F. Adams */ 957c8b0795cSMark F. Adams #undef __FUNCT__ 958b43b03e9SMark F. Adams #define __FUNCT__ "PCGAMGCoarsen_AGG" 9592fa5cd67SKarl Rupp PetscErrorCode PCGAMGCoarsen_AGG(PC a_pc,Mat *a_Gmat1,PetscCoarsenData **agg_lists) 960c8b0795cSMark F. Adams { 961c8b0795cSMark F. Adams PetscErrorCode ierr; 962e0940f08SMark F. Adams PC_MG *mg = (PC_MG*)a_pc->data; 963c8b0795cSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 964c8b0795cSMark F. Adams PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx; 9650cbbd2e1SMark F. Adams Mat mat,Gmat2, Gmat1 = *a_Gmat1; /* squared graph */ 9669f3f12c8SMark F. Adams const PetscInt verbose = pc_gamg->verbose; 9670cbbd2e1SMark F. Adams IS perm; 968c8b0795cSMark F. Adams PetscInt Ii,nloc,bs,n,m; 969c8b0795cSMark F. Adams PetscInt *permute; 970c8b0795cSMark F. Adams PetscBool *bIndexSet; 971b43b03e9SMark F. Adams MatCoarsen crs; 9723b4367a7SBarry Smith MPI_Comm comm; 973c5df96a5SBarry Smith PetscMPIInt rank,size; 974c8b0795cSMark F. Adams 975c8b0795cSMark F. Adams PetscFunctionBegin; 9760cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG 9770cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(PC_GAMGCoarsen_AGG,0,0,0,0);CHKERRQ(ierr); 9780cbbd2e1SMark F. Adams #endif 9793b4367a7SBarry Smith ierr = PetscObjectGetComm((PetscObject)Gmat1,&comm);CHKERRQ(ierr); 9803b4367a7SBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 9813b4367a7SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 982e0940f08SMark F. Adams ierr = MatGetLocalSize(Gmat1, &n, &m);CHKERRQ(ierr); 98371959b99SBarry Smith ierr = MatGetBlockSize(Gmat1, &bs);CHKERRQ(ierr); 98471959b99SBarry Smith if (bs != 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"bs %D must be 1",bs); 985c8b0795cSMark F. Adams nloc = n/bs; 986c8b0795cSMark F. Adams 987e0940f08SMark F. Adams if (pc_gamg_agg->square_graph) { 9883b4367a7SBarry Smith if (verbose > 1) PetscPrintf(comm,"[%d]%s square graph\n",rank,__FUNCT__); 989878e152fSMark F. Adams /* ierr = MatMatTransposeMult(Gmat1, Gmat1, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Gmat2); */ 990806fa848SBarry Smith ierr = MatTransposeMatMult(Gmat1, Gmat1, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Gmat2);CHKERRQ(ierr); 9919f3f12c8SMark F. Adams if (verbose > 2) { 9923b4367a7SBarry Smith ierr = PetscPrintf(comm,"[%d]%s square graph done\n",rank,__FUNCT__);CHKERRQ(ierr); 993f10ff945SMark F. Adams /* check for symetry */ 994f10ff945SMark F. Adams if (verbose > 4) { 995f10ff945SMark F. Adams 996f10ff945SMark F. Adams } 9979f3f12c8SMark F. Adams } 998806fa848SBarry Smith } else Gmat2 = Gmat1; 999c8b0795cSMark F. Adams 1000c8b0795cSMark F. Adams /* get MIS aggs */ 1001c8b0795cSMark F. Adams /* randomize */ 1002c8b0795cSMark F. Adams ierr = PetscMalloc(nloc*sizeof(PetscInt), &permute);CHKERRQ(ierr); 1003c8b0795cSMark F. Adams ierr = PetscMalloc(nloc*sizeof(PetscBool), &bIndexSet);CHKERRQ(ierr); 1004c8b0795cSMark F. Adams for (Ii = 0; Ii < nloc; Ii++) { 1005c8b0795cSMark F. Adams bIndexSet[Ii] = PETSC_FALSE; 1006c8b0795cSMark F. Adams permute[Ii] = Ii; 1007c8b0795cSMark F. Adams } 1008c8b0795cSMark F. Adams srand(1); /* make deterministic */ 1009c8b0795cSMark F. Adams for (Ii = 0; Ii < nloc; Ii++) { 1010c8b0795cSMark F. Adams PetscInt iSwapIndex = rand()%nloc; 1011c8b0795cSMark F. Adams if (!bIndexSet[iSwapIndex] && iSwapIndex != Ii) { 1012c8b0795cSMark F. Adams PetscInt iTemp = permute[iSwapIndex]; 1013c8b0795cSMark F. Adams permute[iSwapIndex] = permute[Ii]; 1014c8b0795cSMark F. Adams permute[Ii] = iTemp; 1015c8b0795cSMark F. Adams bIndexSet[iSwapIndex] = PETSC_TRUE; 1016c8b0795cSMark F. Adams } 1017c8b0795cSMark F. Adams } 1018c8b0795cSMark F. Adams ierr = PetscFree(bIndexSet);CHKERRQ(ierr); 1019c8b0795cSMark F. Adams 10203b4367a7SBarry Smith if (verbose > 1) PetscPrintf(comm,"[%d]%s coarsen graph\n",rank,__FUNCT__); 10219f3f12c8SMark F. Adams 1022806fa848SBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF, nloc, permute, PETSC_USE_POINTER, &perm);CHKERRQ(ierr); 10230cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 10240cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(petsc_gamg_setup_events[SET4],0,0,0,0);CHKERRQ(ierr); 1025b43b03e9SMark F. Adams #endif 10263b4367a7SBarry Smith ierr = MatCoarsenCreate(comm, &crs);CHKERRQ(ierr); 10279057884aSMark F. Adams /* ierr = MatCoarsenSetType(crs, MATCOARSENMIS);CHKERRQ(ierr); */ 10289057884aSMark F. Adams ierr = MatCoarsenSetFromOptions(crs);CHKERRQ(ierr); 1029b43b03e9SMark F. Adams ierr = MatCoarsenSetGreedyOrdering(crs, perm);CHKERRQ(ierr); 1030b43b03e9SMark F. Adams ierr = MatCoarsenSetAdjacency(crs, Gmat2);CHKERRQ(ierr); 1031b43b03e9SMark F. Adams ierr = MatCoarsenSetVerbose(crs, pc_gamg->verbose);CHKERRQ(ierr); 1032b43b03e9SMark F. Adams ierr = MatCoarsenSetStrictAggs(crs, PETSC_TRUE);CHKERRQ(ierr); 1033b43b03e9SMark F. Adams ierr = MatCoarsenApply(crs);CHKERRQ(ierr); 10340cbbd2e1SMark F. Adams ierr = MatCoarsenGetData(crs, agg_lists);CHKERRQ(ierr); /* output */ 1035b43b03e9SMark F. Adams ierr = MatCoarsenDestroy(&crs);CHKERRQ(ierr); 1036b43b03e9SMark F. Adams 1037c8b0795cSMark F. Adams ierr = ISDestroy(&perm);CHKERRQ(ierr); 1038c8b0795cSMark F. Adams ierr = PetscFree(permute);CHKERRQ(ierr); 10390cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 10400cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(petsc_gamg_setup_events[SET4],0,0,0,0);CHKERRQ(ierr); 1041b43b03e9SMark F. Adams #endif 10423b4367a7SBarry Smith if (verbose > 2) PetscPrintf(comm,"[%d]%s coarsen graph done\n",rank,__FUNCT__); 10439f3f12c8SMark F. Adams 1044c8b0795cSMark F. Adams /* smooth aggs */ 1045e0940f08SMark F. Adams if (Gmat2 != Gmat1) { 10460cbbd2e1SMark F. Adams const PetscCoarsenData *llist = *agg_lists; 10470cbbd2e1SMark F. Adams ierr = smoothAggs(Gmat2, Gmat1, *agg_lists);CHKERRQ(ierr); 1048c8b0795cSMark F. Adams ierr = MatDestroy(&Gmat1);CHKERRQ(ierr); 1049e0940f08SMark F. Adams *a_Gmat1 = Gmat2; /* output */ 105041b27cdeSMark F. Adams ierr = PetscCDGetMat(llist, &mat);CHKERRQ(ierr); 10513b4367a7SBarry Smith if (mat) SETERRQ(comm,PETSC_ERR_ARG_WRONG, "Auxilary matrix with squared graph????"); 1052806fa848SBarry Smith } else { 10530cbbd2e1SMark F. Adams const PetscCoarsenData *llist = *agg_lists; 1054f10ff945SMark F. Adams /* see if we have a matrix that takes precedence (returned from MatCoarsenAppply) */ 105541b27cdeSMark F. Adams ierr = PetscCDGetMat(llist, &mat);CHKERRQ(ierr); 10560cbbd2e1SMark F. Adams if (mat) { 10570cbbd2e1SMark F. Adams ierr = MatDestroy(&Gmat1);CHKERRQ(ierr); 10580cbbd2e1SMark F. Adams *a_Gmat1 = mat; /* output */ 10590cbbd2e1SMark F. Adams } 10600cbbd2e1SMark F. Adams } 10610cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG 10620cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(PC_GAMGCoarsen_AGG,0,0,0,0);CHKERRQ(ierr); 10630cbbd2e1SMark F. Adams #endif 10643b4367a7SBarry Smith if (verbose > 2) PetscPrintf(comm,"[%d]%s PCGAMGCoarsen_AGG done\n",rank,__FUNCT__); 1065c8b0795cSMark F. Adams PetscFunctionReturn(0); 1066c8b0795cSMark F. Adams } 1067c8b0795cSMark F. Adams 1068c8b0795cSMark F. Adams /* -------------------------------------------------------------------------- */ 1069c8b0795cSMark F. Adams /* 10700cbbd2e1SMark F. Adams PCGAMGProlongator_AGG 1071c8b0795cSMark F. Adams 1072c8b0795cSMark F. Adams Input Parameter: 1073c8b0795cSMark F. Adams . pc - this 1074c8b0795cSMark F. Adams . Amat - matrix on this fine level 1075c8b0795cSMark F. Adams . Graph - used to get ghost data for nodes in 10760cbbd2e1SMark F. Adams . agg_lists - list of aggregates 1077c8b0795cSMark F. Adams Output Parameter: 1078c8b0795cSMark F. Adams . a_P_out - prolongation operator to the next level 1079c8b0795cSMark F. Adams */ 1080c8b0795cSMark F. Adams #undef __FUNCT__ 10810cbbd2e1SMark F. Adams #define __FUNCT__ "PCGAMGProlongator_AGG" 10822fa5cd67SKarl Rupp PetscErrorCode PCGAMGProlongator_AGG(PC pc,const Mat Amat,const Mat Gmat,PetscCoarsenData *agg_lists,Mat *a_P_out) 10832e68589bSMark F. Adams { 10842e68589bSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 10852e68589bSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 10862e68589bSMark F. Adams const PetscInt verbose = pc_gamg->verbose; 1087c8b0795cSMark F. Adams const PetscInt data_cols = pc_gamg->data_cell_cols; 10882e68589bSMark F. Adams PetscErrorCode ierr; 1089c8b0795cSMark F. Adams PetscInt Istart,Iend,nloc,ii,jj,kk,my0,nLocalSelected,bs; 1090c8b0795cSMark F. Adams Mat Prol; 1091c5df96a5SBarry Smith PetscMPIInt rank, size; 10923b4367a7SBarry Smith MPI_Comm comm; 10930cbbd2e1SMark F. Adams const PetscInt col_bs = data_cols; 1094c8b0795cSMark F. Adams PetscReal *data_w_ghost; 1095c8b0795cSMark F. Adams PetscInt myCrs0, nbnodes=0, *flid_fgid; 10962e68589bSMark F. Adams 10972e68589bSMark F. Adams PetscFunctionBegin; 10983b4367a7SBarry Smith ierr = PetscObjectGetComm((PetscObject)Amat,&comm);CHKERRQ(ierr); 10990cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG 11000cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(PC_GAMGProlongator_AGG,0,0,0,0);CHKERRQ(ierr); 11010cbbd2e1SMark F. Adams #endif 11023b4367a7SBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 11033b4367a7SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 11042e68589bSMark F. Adams ierr = MatGetOwnershipRange(Amat, &Istart, &Iend);CHKERRQ(ierr); 1105c8b0795cSMark F. Adams ierr = MatGetBlockSize(Amat, &bs);CHKERRQ(ierr); 110671959b99SBarry Smith nloc = (Iend-Istart)/bs; my0 = Istart/bs; 110771959b99SBarry Smith if ((Iend-Istart) % bs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"(Iend %D - Istart %D) not divisible by bs %D",Iend,Istart,bs); 11082e68589bSMark F. Adams 11092e68589bSMark F. Adams /* get 'nLocalSelected' */ 11100cbbd2e1SMark F. Adams for (ii=0, nLocalSelected = 0; ii < nloc; ii++) { 1111e78576d6SMark F. Adams PetscBool ise; 11120cbbd2e1SMark F. Adams /* filter out singletons 0 or 1? */ 1113e78576d6SMark F. Adams ierr = PetscCDEmptyAt(agg_lists, ii, &ise);CHKERRQ(ierr); 1114e78576d6SMark F. Adams if (!ise) nLocalSelected++; 11152e68589bSMark F. Adams } 11162e68589bSMark F. Adams 11172e68589bSMark F. Adams /* create prolongator, create P matrix */ 11183b4367a7SBarry Smith ierr = MatCreate(comm, &Prol);CHKERRQ(ierr); 1119806fa848SBarry Smith ierr = MatSetSizes(Prol,nloc*bs,nLocalSelected*col_bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 1120a2f3521dSMark F. Adams ierr = MatSetBlockSizes(Prol, bs, col_bs);CHKERRQ(ierr); 1121a2f3521dSMark F. Adams ierr = MatSetType(Prol, MATAIJ);CHKERRQ(ierr); 11220298fd71SBarry Smith ierr = MatSeqAIJSetPreallocation(Prol, data_cols, NULL);CHKERRQ(ierr); 11230298fd71SBarry Smith ierr = MatMPIAIJSetPreallocation(Prol,data_cols, NULL,data_cols, NULL);CHKERRQ(ierr); 1124a2f3521dSMark F. Adams /* nloc*bs, nLocalSelected*col_bs, */ 1125a2f3521dSMark F. Adams /* PETSC_DETERMINE, PETSC_DETERMINE, */ 11260298fd71SBarry Smith /* data_cols, NULL, data_cols, NULL, */ 1127a2f3521dSMark F. Adams /* &Prol); */ 11282e68589bSMark F. Adams 11292e68589bSMark F. Adams /* can get all points "removed" */ 1130c8b0795cSMark F. Adams ierr = MatGetSize(Prol, &kk, &ii);CHKERRQ(ierr); 1131c8b0795cSMark F. Adams if (ii==0) { 11323b4367a7SBarry Smith if (verbose > 0) PetscPrintf(comm,"[%d]%s no selected points on coarse grid\n",rank,__FUNCT__); 11332e68589bSMark F. Adams ierr = MatDestroy(&Prol);CHKERRQ(ierr); 11340298fd71SBarry Smith *a_P_out = NULL; /* out */ 11352e68589bSMark F. Adams PetscFunctionReturn(0); 11362e68589bSMark F. Adams } 11373b4367a7SBarry Smith if (verbose > 0) PetscPrintf(comm,"\t\t[%d]%s New grid %d nodes\n",rank,__FUNCT__,ii/col_bs); 1138c8b0795cSMark F. Adams ierr = MatGetOwnershipRangeColumn(Prol, &myCrs0, &kk);CHKERRQ(ierr); 11390cbbd2e1SMark F. Adams 114071959b99SBarry Smith if ((kk-myCrs0) % col_bs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"(kk %D -myCrs0 %D) not divisible by col_bs %D",kk,myCrs0,col_bs); 1141c8b0795cSMark F. Adams myCrs0 = myCrs0/col_bs; 114271959b99SBarry Smith if ((kk/col_bs-myCrs0) != nLocalSelected) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_PLIB,"(kk %D/col_bs %D - myCrs0 %D) != nLocalSelected %D)",kk,col_bs,myCrs0,nLocalSelected); 11432e68589bSMark F. Adams 11442e68589bSMark F. Adams /* create global vector of data in 'data_w_ghost' */ 11450cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 11460cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(petsc_gamg_setup_events[SET7],0,0,0,0);CHKERRQ(ierr); 11472e68589bSMark F. Adams #endif 1148c5df96a5SBarry Smith if (size > 1) { /* */ 11492e68589bSMark F. Adams PetscReal *tmp_gdata,*tmp_ldata,*tp2; 11502e68589bSMark F. Adams ierr = PetscMalloc(nloc*sizeof(PetscReal), &tmp_ldata);CHKERRQ(ierr); 11512e68589bSMark F. Adams for (jj = 0; jj < data_cols; jj++) { 1152c8b0795cSMark F. Adams for (kk = 0; kk < bs; kk++) { 1153a2f3521dSMark F. Adams PetscInt ii,stride; 1154c8b0795cSMark F. Adams const PetscReal *tp = pc_gamg->data + jj*bs*nloc + kk; 11552fa5cd67SKarl Rupp for (ii = 0; ii < nloc; ii++, tp += bs) tmp_ldata[ii] = *tp; 11562fa5cd67SKarl Rupp 1157806fa848SBarry Smith ierr = PCGAMGGetDataWithGhosts(Gmat, 1, tmp_ldata, &stride, &tmp_gdata);CHKERRQ(ierr); 1158a2f3521dSMark F. Adams 11592e68589bSMark F. Adams if (jj==0 && kk==0) { /* now I know how many todal nodes - allocate */ 1160a2f3521dSMark F. Adams ierr = PetscMalloc(stride*bs*data_cols*sizeof(PetscReal), &data_w_ghost);CHKERRQ(ierr); 1161a2f3521dSMark F. Adams nbnodes = bs*stride; 11622e68589bSMark F. Adams } 1163a2f3521dSMark F. Adams tp2 = data_w_ghost + jj*bs*stride + kk; 11642fa5cd67SKarl Rupp for (ii = 0; ii < stride; ii++, tp2 += bs) *tp2 = tmp_gdata[ii]; 11652e68589bSMark F. Adams ierr = PetscFree(tmp_gdata);CHKERRQ(ierr); 11662e68589bSMark F. Adams } 11672e68589bSMark F. Adams } 11682e68589bSMark F. Adams ierr = PetscFree(tmp_ldata);CHKERRQ(ierr); 1169806fa848SBarry Smith } else { 1170c8b0795cSMark F. Adams nbnodes = bs*nloc; 1171c8b0795cSMark F. Adams data_w_ghost = (PetscReal*)pc_gamg->data; 11722e68589bSMark F. Adams } 11732e68589bSMark F. Adams 11742e68589bSMark F. Adams /* get P0 */ 1175c5df96a5SBarry Smith if (size > 1) { 11762e68589bSMark F. Adams PetscReal *fid_glid_loc,*fiddata; 1177a2f3521dSMark F. Adams PetscInt stride; 11782e68589bSMark F. Adams 11792e68589bSMark F. Adams ierr = PetscMalloc(nloc*sizeof(PetscReal), &fid_glid_loc);CHKERRQ(ierr); 11802e68589bSMark F. Adams for (kk=0; kk<nloc; kk++) fid_glid_loc[kk] = (PetscReal)(my0+kk); 1181806fa848SBarry Smith ierr = PCGAMGGetDataWithGhosts(Gmat, 1, fid_glid_loc, &stride, &fiddata);CHKERRQ(ierr); 1182a2f3521dSMark F. Adams ierr = PetscMalloc(stride*sizeof(PetscInt), &flid_fgid);CHKERRQ(ierr); 1183a2f3521dSMark F. Adams for (kk=0; kk<stride; kk++) flid_fgid[kk] = (PetscInt)fiddata[kk]; 11842e68589bSMark F. Adams ierr = PetscFree(fiddata);CHKERRQ(ierr); 1185a2f3521dSMark F. Adams 118671959b99SBarry Smith if (stride != nbnodes/bs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"stride %D != nbnodes %D/bs %D",stride,nbnodes,bs); 11872e68589bSMark F. Adams ierr = PetscFree(fid_glid_loc);CHKERRQ(ierr); 1188806fa848SBarry Smith } else { 11892e68589bSMark F. Adams ierr = PetscMalloc(nloc*sizeof(PetscInt), &flid_fgid);CHKERRQ(ierr); 11902e68589bSMark F. Adams for (kk=0; kk<nloc; kk++) flid_fgid[kk] = my0 + kk; 11912e68589bSMark F. Adams } 11920cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 11930cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(petsc_gamg_setup_events[SET7],0,0,0,0);CHKERRQ(ierr); 11940cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(petsc_gamg_setup_events[SET8],0,0,0,0);CHKERRQ(ierr); 11952e68589bSMark F. Adams #endif 1196c8b0795cSMark F. Adams { 11970298fd71SBarry Smith PetscReal *data_out = NULL; 1198806fa848SBarry Smith ierr = formProl0(agg_lists, bs, data_cols, myCrs0, nbnodes,data_w_ghost, flid_fgid, &data_out, Prol);CHKERRQ(ierr); 1199c8b0795cSMark F. Adams ierr = PetscFree(pc_gamg->data);CHKERRQ(ierr); 12002fa5cd67SKarl Rupp 1201c8b0795cSMark F. Adams pc_gamg->data = data_out; 1202c8b0795cSMark F. Adams pc_gamg->data_cell_rows = data_cols; 1203c8b0795cSMark F. Adams pc_gamg->data_sz = data_cols*data_cols*nLocalSelected; 1204c8b0795cSMark F. Adams } 12050cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 12060cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(petsc_gamg_setup_events[SET8],0,0,0,0);CHKERRQ(ierr); 1207c8b0795cSMark F. Adams #endif 1208c5df96a5SBarry Smith if (size > 1) ierr = PetscFree(data_w_ghost);CHKERRQ(ierr); 12092e68589bSMark F. Adams ierr = PetscFree(flid_fgid);CHKERRQ(ierr); 12102e68589bSMark F. Adams 1211c8b0795cSMark F. Adams *a_P_out = Prol; /* out */ 12120cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG 12130cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(PC_GAMGProlongator_AGG,0,0,0,0);CHKERRQ(ierr); 12140cbbd2e1SMark F. Adams #endif 1215c8b0795cSMark F. Adams PetscFunctionReturn(0); 1216c8b0795cSMark F. Adams } 1217c8b0795cSMark F. Adams 1218c8b0795cSMark F. Adams /* -------------------------------------------------------------------------- */ 1219c8b0795cSMark F. Adams /* 12200cbbd2e1SMark F. Adams PCGAMGOptprol_AGG 1221c8b0795cSMark F. Adams 1222c8b0795cSMark F. Adams Input Parameter: 1223c8b0795cSMark F. Adams . pc - this 1224c8b0795cSMark F. Adams . Amat - matrix on this fine level 1225c8b0795cSMark F. Adams In/Output Parameter: 1226c8b0795cSMark F. Adams . a_P_out - prolongation operator to the next level 1227c8b0795cSMark F. Adams */ 1228c8b0795cSMark F. Adams #undef __FUNCT__ 12290cbbd2e1SMark F. Adams #define __FUNCT__ "PCGAMGOptprol_AGG" 12302fa5cd67SKarl Rupp PetscErrorCode PCGAMGOptprol_AGG(PC pc,const Mat Amat,Mat *a_P) 1231c8b0795cSMark F. Adams { 1232c8b0795cSMark F. Adams PetscErrorCode ierr; 1233c8b0795cSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 1234c8b0795cSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 1235c8b0795cSMark F. Adams const PetscInt verbose = pc_gamg->verbose; 1236c8b0795cSMark F. Adams PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx; 1237c8b0795cSMark F. Adams PetscInt jj; 1238c5df96a5SBarry Smith PetscMPIInt rank,size; 1239c8b0795cSMark F. Adams Mat Prol = *a_P; 12403b4367a7SBarry Smith MPI_Comm comm; 1241c8b0795cSMark F. Adams 1242c8b0795cSMark F. Adams PetscFunctionBegin; 12433b4367a7SBarry Smith ierr = PetscObjectGetComm((PetscObject)Amat,&comm);CHKERRQ(ierr); 12440cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG 12450cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(PC_GAMGOptprol_AGG,0,0,0,0);CHKERRQ(ierr); 12460cbbd2e1SMark F. Adams #endif 12473b4367a7SBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 12483b4367a7SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 1249c8b0795cSMark F. Adams 12502e68589bSMark F. Adams /* smooth P0 */ 1251c8b0795cSMark F. Adams for (jj = 0; jj < pc_gamg_agg->nsmooths; jj++) { 12522e68589bSMark F. Adams Mat tMat; 12532e68589bSMark F. Adams Vec diag; 12542e68589bSMark F. Adams PetscReal alpha, emax, emin; 12550cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 12560cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(petsc_gamg_setup_events[SET9],0,0,0,0);CHKERRQ(ierr); 12572e68589bSMark F. Adams #endif 12582e68589bSMark F. Adams if (jj == 0) { 12592e68589bSMark F. Adams KSP eksp; 12602e68589bSMark F. Adams Vec bb, xx; 1261da509fc8SJed Brown PC epc; 12622e68589bSMark F. Adams ierr = MatGetVecs(Amat, &bb, 0);CHKERRQ(ierr); 12632e68589bSMark F. Adams ierr = MatGetVecs(Amat, &xx, 0);CHKERRQ(ierr); 12642e68589bSMark F. Adams { 12652e68589bSMark F. Adams PetscRandom rctx; 12663b4367a7SBarry Smith ierr = PetscRandomCreate(comm,&rctx);CHKERRQ(ierr); 12672e68589bSMark F. Adams ierr = PetscRandomSetFromOptions(rctx);CHKERRQ(ierr); 12682e68589bSMark F. Adams ierr = VecSetRandom(bb,rctx);CHKERRQ(ierr); 12692e68589bSMark F. Adams ierr = PetscRandomDestroy(&rctx);CHKERRQ(ierr); 12702e68589bSMark F. Adams } 1271e696ed0bSMark F. Adams 1272e696ed0bSMark F. Adams /* zeroing out BC rows -- needed for crazy matrices */ 1273e696ed0bSMark F. Adams { 1274e696ed0bSMark F. Adams PetscInt Istart,Iend,ncols,jj,Ii; 1275e696ed0bSMark F. Adams PetscScalar zero = 0.0; 1276e696ed0bSMark F. Adams ierr = MatGetOwnershipRange(Amat, &Istart, &Iend);CHKERRQ(ierr); 1277e696ed0bSMark F. Adams for (Ii = Istart, jj = 0; Ii < Iend; Ii++, jj++) { 1278e696ed0bSMark F. Adams ierr = MatGetRow(Amat,Ii,&ncols,0,0);CHKERRQ(ierr); 1279e696ed0bSMark F. Adams if (ncols <= 1) { 1280e696ed0bSMark F. Adams ierr = VecSetValues(bb, 1, &Ii, &zero, INSERT_VALUES);CHKERRQ(ierr); 1281e696ed0bSMark F. Adams } 1282e696ed0bSMark F. Adams ierr = MatRestoreRow(Amat,Ii,&ncols,0,0);CHKERRQ(ierr); 1283e696ed0bSMark F. Adams } 1284e696ed0bSMark F. Adams ierr = VecAssemblyBegin(bb);CHKERRQ(ierr); 1285e696ed0bSMark F. Adams ierr = VecAssemblyEnd(bb);CHKERRQ(ierr); 1286e696ed0bSMark F. Adams } 1287e696ed0bSMark F. Adams 12883b4367a7SBarry Smith ierr = KSPCreate(comm,&eksp);CHKERRQ(ierr); 1289806fa848SBarry Smith ierr = KSPSetTolerances(eksp,PETSC_DEFAULT,PETSC_DEFAULT,PETSC_DEFAULT,10);CHKERRQ(ierr); 12902e68589bSMark F. Adams ierr = KSPSetNormType(eksp, KSP_NORM_NONE);CHKERRQ(ierr); 1291da509fc8SJed Brown ierr = KSPSetOptionsPrefix(eksp,((PetscObject)pc)->prefix);CHKERRQ(ierr); 1292c2436cacSMark F. Adams ierr = KSPAppendOptionsPrefix(eksp, "gamg_est_");CHKERRQ(ierr); 1293c2436cacSMark F. Adams ierr = KSPSetFromOptions(eksp);CHKERRQ(ierr); 1294c2436cacSMark F. Adams 1295c2436cacSMark F. Adams ierr = KSPSetInitialGuessNonzero(eksp, PETSC_FALSE);CHKERRQ(ierr); 1296806fa848SBarry Smith ierr = KSPSetOperators(eksp, Amat, Amat, SAME_NONZERO_PATTERN);CHKERRQ(ierr); 12972e68589bSMark F. Adams ierr = KSPSetComputeSingularValues(eksp,PETSC_TRUE);CHKERRQ(ierr); 12982e68589bSMark F. Adams 1299da509fc8SJed Brown ierr = KSPGetPC(eksp, &epc);CHKERRQ(ierr); 1300da509fc8SJed Brown ierr = PCSetType(epc, PCJACOBI);CHKERRQ(ierr); /* smoother in smoothed agg. */ 1301c2436cacSMark F. Adams 13022e68589bSMark F. Adams /* solve - keep stuff out of logging */ 13032e68589bSMark F. Adams ierr = PetscLogEventDeactivate(KSP_Solve);CHKERRQ(ierr); 13042e68589bSMark F. Adams ierr = PetscLogEventDeactivate(PC_Apply);CHKERRQ(ierr); 13052e68589bSMark F. Adams ierr = KSPSolve(eksp, bb, xx);CHKERRQ(ierr); 13062e68589bSMark F. Adams ierr = PetscLogEventActivate(KSP_Solve);CHKERRQ(ierr); 13072e68589bSMark F. Adams ierr = PetscLogEventActivate(PC_Apply);CHKERRQ(ierr); 13082e68589bSMark F. Adams 13092e68589bSMark F. Adams ierr = KSPComputeExtremeSingularValues(eksp, &emax, &emin);CHKERRQ(ierr); 13109f3f12c8SMark F. Adams if (verbose > 0) { 13113b4367a7SBarry Smith PetscPrintf(comm,"\t\t\t%s smooth P0: max eigen=%e min=%e PC=%s\n", 13122e68589bSMark F. Adams __FUNCT__,emax,emin,PCJACOBI); 13132e68589bSMark F. Adams } 13142e68589bSMark F. Adams ierr = VecDestroy(&xx);CHKERRQ(ierr); 13152e68589bSMark F. Adams ierr = VecDestroy(&bb);CHKERRQ(ierr); 13162e68589bSMark F. Adams ierr = KSPDestroy(&eksp);CHKERRQ(ierr); 13172e68589bSMark F. Adams 13182e68589bSMark F. Adams if (pc_gamg->emax_id == -1) { 13193bf036e2SBarry Smith ierr = PetscObjectComposedDataRegister(&pc_gamg->emax_id);CHKERRQ(ierr); 132071959b99SBarry Smith if (pc_gamg->emax_id == -1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"pc_gamg->emax_id == -1"); 13212e68589bSMark F. Adams } 13222e68589bSMark F. Adams ierr = PetscObjectComposedDataSetScalar((PetscObject)Amat, pc_gamg->emax_id, emax);CHKERRQ(ierr); 13232e68589bSMark F. Adams } 13242e68589bSMark F. Adams 13252e68589bSMark F. Adams /* smooth P1 := (I - omega/lam D^{-1}A)P0 */ 13262e68589bSMark F. Adams ierr = MatMatMult(Amat, Prol, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &tMat);CHKERRQ(ierr); 13272e68589bSMark F. Adams ierr = MatGetVecs(Amat, &diag, 0);CHKERRQ(ierr); 13282e68589bSMark F. Adams ierr = MatGetDiagonal(Amat, diag);CHKERRQ(ierr); /* effectively PCJACOBI */ 13292e68589bSMark F. Adams ierr = VecReciprocal(diag);CHKERRQ(ierr); 13302e68589bSMark F. Adams ierr = MatDiagonalScale(tMat, diag, 0);CHKERRQ(ierr); 13312e68589bSMark F. Adams ierr = VecDestroy(&diag);CHKERRQ(ierr); 1332b4ec6429SMark F. Adams alpha = -1.4/emax; 13332e68589bSMark F. Adams ierr = MatAYPX(tMat, alpha, Prol, SUBSET_NONZERO_PATTERN);CHKERRQ(ierr); 13342e68589bSMark F. Adams ierr = MatDestroy(&Prol);CHKERRQ(ierr); 13352e68589bSMark F. Adams Prol = tMat; 13360cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 13370cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(petsc_gamg_setup_events[SET9],0,0,0,0);CHKERRQ(ierr); 13382e68589bSMark F. Adams #endif 13392e68589bSMark F. Adams } 13400cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG 13410cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(PC_GAMGOptprol_AGG,0,0,0,0);CHKERRQ(ierr); 13420cbbd2e1SMark F. Adams #endif 1343c8b0795cSMark F. Adams *a_P = Prol; 1344c8b0795cSMark F. Adams PetscFunctionReturn(0); 13452e68589bSMark F. Adams } 13462e68589bSMark F. Adams 1347c8b0795cSMark F. Adams /* -------------------------------------------------------------------------- */ 1348c8b0795cSMark F. Adams /* 1349a2f3521dSMark F. Adams PCGAMGKKTProl_AGG 1350a2f3521dSMark F. Adams 1351a2f3521dSMark F. Adams Input Parameter: 1352a2f3521dSMark F. Adams . pc - this 1353a2f3521dSMark F. Adams . Prol11 - matrix on this fine level 1354a2f3521dSMark F. Adams . A21 - matrix on this fine level 1355a2f3521dSMark F. Adams In/Output Parameter: 1356a2f3521dSMark F. Adams . a_P22 - prolongation operator to the next level 1357a2f3521dSMark F. Adams */ 1358a2f3521dSMark F. Adams #undef __FUNCT__ 1359a2f3521dSMark F. Adams #define __FUNCT__ "PCGAMGKKTProl_AGG" 13602fa5cd67SKarl Rupp PetscErrorCode PCGAMGKKTProl_AGG(PC pc,const Mat Prol11,const Mat A21,Mat *a_P22) 1361a2f3521dSMark F. Adams { 1362a2f3521dSMark F. Adams PetscErrorCode ierr; 1363a2f3521dSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 1364a2f3521dSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 1365a2f3521dSMark F. Adams const PetscInt verbose = pc_gamg->verbose; 1366a2f3521dSMark F. Adams /* PC_GAMG_AGG *pc_gamg_agg = (PC_GAMG_AGG*)pc_gamg->subctx; */ 1367c5df96a5SBarry Smith PetscMPIInt rank,size; 1368a2f3521dSMark F. Adams Mat Prol22,Tmat,Gmat; 13693b4367a7SBarry Smith MPI_Comm comm; 1370a2f3521dSMark F. Adams PetscCoarsenData *agg_lists; 1371a2f3521dSMark F. Adams 1372a2f3521dSMark F. Adams PetscFunctionBegin; 13733b4367a7SBarry Smith ierr = PetscObjectGetComm((PetscObject)pc,&comm);CHKERRQ(ierr); 1374a2f3521dSMark F. Adams #if defined PETSC_USE_LOG 1375a2f3521dSMark F. Adams ierr = PetscLogEventBegin(PC_GAMGKKTProl_AGG,0,0,0,0);CHKERRQ(ierr); 1376a2f3521dSMark F. Adams #endif 13773b4367a7SBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 13783b4367a7SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 1379a2f3521dSMark F. Adams 1380a2f3521dSMark F. Adams /* form C graph */ 1381a2f3521dSMark F. Adams ierr = MatMatMult(A21, Prol11, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Tmat);CHKERRQ(ierr); 1382a2f3521dSMark F. Adams ierr = MatMatTransposeMult(Tmat, Tmat, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Gmat);CHKERRQ(ierr); 1383a2f3521dSMark F. Adams ierr = MatDestroy(&Tmat);CHKERRQ(ierr); 1384a2f3521dSMark F. Adams ierr = PCGAMGFilterGraph(&Gmat, 0.0, PETSC_FALSE, verbose);CHKERRQ(ierr); 1385a2f3521dSMark F. Adams 1386a2f3521dSMark F. Adams /* coarsen constraints */ 1387a2f3521dSMark F. Adams { 1388a2f3521dSMark F. Adams MatCoarsen crs; 13893b4367a7SBarry Smith ierr = MatCoarsenCreate(comm, &crs);CHKERRQ(ierr); 1390a2f3521dSMark F. Adams ierr = MatCoarsenSetType(crs, MATCOARSENMIS);CHKERRQ(ierr); 1391a2f3521dSMark F. Adams ierr = MatCoarsenSetAdjacency(crs, Gmat);CHKERRQ(ierr); 1392a2f3521dSMark F. Adams ierr = MatCoarsenSetVerbose(crs, verbose);CHKERRQ(ierr); 1393a2f3521dSMark F. Adams ierr = MatCoarsenSetStrictAggs(crs, PETSC_TRUE);CHKERRQ(ierr); 1394a2f3521dSMark F. Adams ierr = MatCoarsenApply(crs);CHKERRQ(ierr); 1395a2f3521dSMark F. Adams ierr = MatCoarsenGetData(crs, &agg_lists);CHKERRQ(ierr); 1396a2f3521dSMark F. Adams ierr = MatCoarsenDestroy(&crs);CHKERRQ(ierr); 1397a2f3521dSMark F. Adams } 1398a2f3521dSMark F. Adams 1399a2f3521dSMark F. Adams /* form simple prolongation 'Prol22' */ 1400a2f3521dSMark F. Adams { 1401a2f3521dSMark F. Adams PetscInt ii,mm,clid,my0,nloc,nLocalSelected; 1402a2f3521dSMark F. Adams PetscScalar val = 1.0; 1403a2f3521dSMark F. Adams /* get 'nLocalSelected' */ 1404a2f3521dSMark F. Adams ierr = MatGetLocalSize(Gmat, &nloc, &ii);CHKERRQ(ierr); 1405a2f3521dSMark F. Adams for (ii=0, nLocalSelected = 0; ii < nloc; ii++) { 1406a2f3521dSMark F. Adams PetscBool ise; 1407a2f3521dSMark F. Adams /* filter out singletons 0 or 1? */ 1408a2f3521dSMark F. Adams ierr = PetscCDEmptyAt(agg_lists, ii, &ise);CHKERRQ(ierr); 1409a2f3521dSMark F. Adams if (!ise) nLocalSelected++; 1410a2f3521dSMark F. Adams } 1411a2f3521dSMark F. Adams 14123b4367a7SBarry Smith ierr = MatCreate(comm,&Prol22);CHKERRQ(ierr); 1413806fa848SBarry Smith ierr = MatSetSizes(Prol22,nloc, nLocalSelected,PETSC_DETERMINE, PETSC_DETERMINE);CHKERRQ(ierr); 1414a2f3521dSMark F. Adams ierr = MatSetType(Prol22, MATAIJ);CHKERRQ(ierr); 14150298fd71SBarry Smith ierr = MatSeqAIJSetPreallocation(Prol22,1,NULL);CHKERRQ(ierr); 14160298fd71SBarry Smith ierr = MatMPIAIJSetPreallocation(Prol22,1,NULL,1,NULL);CHKERRQ(ierr); 14173b4367a7SBarry Smith /* ierr = MatCreateAIJ(comm, */ 1418a2f3521dSMark F. Adams /* nloc, nLocalSelected, */ 1419a2f3521dSMark F. Adams /* PETSC_DETERMINE, PETSC_DETERMINE, */ 14200298fd71SBarry Smith /* 1, NULL, 1, NULL, */ 1421a2f3521dSMark F. Adams /* &Prol22); */ 1422a2f3521dSMark F. Adams 1423a2f3521dSMark F. Adams ierr = MatGetOwnershipRange(Prol22, &my0, &ii);CHKERRQ(ierr); 1424a2f3521dSMark F. Adams nloc = ii - my0; 1425a2f3521dSMark F. Adams 1426a2f3521dSMark F. Adams /* make aggregates */ 1427a2f3521dSMark F. Adams for (mm = clid = 0; mm < nloc; mm++) { 1428a2f3521dSMark F. Adams ierr = PetscCDSizeAt(agg_lists, mm, &ii);CHKERRQ(ierr); 1429a2f3521dSMark F. Adams if (ii > 0) { 1430a2f3521dSMark F. Adams PetscInt asz=ii,cgid=my0+clid,rids[1000]; 1431a2f3521dSMark F. Adams PetscCDPos pos; 1432c666adbfSMark F. Adams if (asz>1000) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Very large aggregate: %d",asz); 1433a2f3521dSMark F. Adams ii = 0; 1434a2f3521dSMark F. Adams ierr = PetscCDGetHeadPos(agg_lists,mm,&pos);CHKERRQ(ierr); 1435a2f3521dSMark F. Adams while (pos) { 1436a2f3521dSMark F. Adams PetscInt gid1; 1437a2f3521dSMark F. Adams ierr = PetscLLNGetID(pos, &gid1);CHKERRQ(ierr); 1438a2f3521dSMark F. Adams ierr = PetscCDGetNextPos(agg_lists,mm,&pos);CHKERRQ(ierr); 1439a2f3521dSMark F. Adams 1440a2f3521dSMark F. Adams rids[ii++] = gid1; 1441a2f3521dSMark F. Adams } 144271959b99SBarry Smith if (ii != asz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"ii %D != asz %D",ii,asz); 1443a2f3521dSMark F. Adams /* add diagonal block of P0 */ 1444a2f3521dSMark F. Adams ierr = MatSetValues(Prol22,asz,rids,1,&cgid,&val,INSERT_VALUES);CHKERRQ(ierr); 1445a2f3521dSMark F. Adams 1446a2f3521dSMark F. Adams clid++; 1447a2f3521dSMark F. Adams } /* coarse agg */ 1448a2f3521dSMark F. Adams } /* for all fine nodes */ 1449a2f3521dSMark F. Adams ierr = MatAssemblyBegin(Prol22,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1450a2f3521dSMark F. Adams ierr = MatAssemblyEnd(Prol22,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1451a2f3521dSMark F. Adams } 1452a2f3521dSMark F. Adams 1453a2f3521dSMark F. Adams /* clean up */ 1454a2f3521dSMark F. Adams ierr = MatDestroy(&Gmat);CHKERRQ(ierr); 1455a2f3521dSMark F. Adams ierr = PetscCDDestroy(agg_lists);CHKERRQ(ierr); 1456a2f3521dSMark F. Adams #if defined PETSC_USE_LOG 1457a2f3521dSMark F. Adams ierr = PetscLogEventEnd(PC_GAMGKKTProl_AGG,0,0,0,0);CHKERRQ(ierr); 1458a2f3521dSMark F. Adams #endif 1459a2f3521dSMark F. Adams *a_P22 = Prol22; 1460a2f3521dSMark F. Adams PetscFunctionReturn(0); 1461a2f3521dSMark F. Adams } 1462a2f3521dSMark F. Adams 1463a2f3521dSMark F. Adams /* -------------------------------------------------------------------------- */ 1464a2f3521dSMark F. Adams /* 1465c8b0795cSMark F. Adams PCCreateGAMG_AGG 14662e68589bSMark F. Adams 1467c8b0795cSMark F. Adams Input Parameter: 1468c8b0795cSMark F. Adams . pc - 1469c8b0795cSMark F. Adams */ 1470c8b0795cSMark F. Adams #undef __FUNCT__ 1471c8b0795cSMark F. Adams #define __FUNCT__ "PCCreateGAMG_AGG" 1472c8b0795cSMark F. Adams PetscErrorCode PCCreateGAMG_AGG(PC pc) 1473c8b0795cSMark F. Adams { 1474c8b0795cSMark F. Adams PetscErrorCode ierr; 1475c8b0795cSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 1476c8b0795cSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 1477c8b0795cSMark F. Adams PC_GAMG_AGG *pc_gamg_agg; 14782e68589bSMark F. Adams 1479c8b0795cSMark F. Adams PetscFunctionBegin; 1480c8b0795cSMark F. Adams /* create sub context for SA */ 1481c8b0795cSMark F. Adams ierr = PetscNewLog(pc, PC_GAMG_AGG, &pc_gamg_agg);CHKERRQ(ierr); 1482c8b0795cSMark F. Adams pc_gamg->subctx = pc_gamg_agg; 1483c8b0795cSMark F. Adams 14841ab5ffc9SJed Brown pc_gamg->ops->setfromoptions = PCSetFromOptions_GAMG_AGG; 14859b8ffb57SJed Brown pc_gamg->ops->destroy = PCDestroy_GAMG_AGG; 1486c8b0795cSMark F. Adams /* reset does not do anything; setup not virtual */ 1487c8b0795cSMark F. Adams 1488c8b0795cSMark F. Adams /* set internal function pointers */ 14891ab5ffc9SJed Brown pc_gamg->ops->graph = PCGAMGgraph_AGG; 14901ab5ffc9SJed Brown pc_gamg->ops->coarsen = PCGAMGCoarsen_AGG; 14911ab5ffc9SJed Brown pc_gamg->ops->prolongator = PCGAMGProlongator_AGG; 14921ab5ffc9SJed Brown pc_gamg->ops->optprol = PCGAMGOptprol_AGG; 14931ab5ffc9SJed Brown pc_gamg->ops->formkktprol = PCGAMGKKTProl_AGG; 1494c8b0795cSMark F. Adams 14951ab5ffc9SJed Brown pc_gamg->ops->createdefaultdata = PCSetData_AGG; 1496c8b0795cSMark F. Adams 1497bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)pc,"PCSetCoordinates_C",PCSetCoordinates_AGG);CHKERRQ(ierr); 14982e68589bSMark F. Adams PetscFunctionReturn(0); 14992e68589bSMark F. Adams } 1500