xref: /petsc/src/ksp/pc/impls/gamg/classical.c (revision af0996ce37bc06907c37d8d91773840993d61e62)
18e6d0c30SPeter Brune #include <../src/ksp/pc/impls/gamg/gamg.h>        /*I "petscpc.h" I*/
2*af0996ceSBarry Smith #include <petsc/private/kspimpl.h>
387b9b13cSPeter Brune #include <petscsf.h>
48e6d0c30SPeter Brune 
58eab0cc1SPeter Brune PetscFunctionList PCGAMGClassicalProlongatorList    = NULL;
68eab0cc1SPeter Brune PetscBool         PCGAMGClassicalPackageInitialized = PETSC_FALSE;
78eab0cc1SPeter Brune 
88e6d0c30SPeter Brune typedef struct {
9586a8384SPeter Brune   PetscReal interp_threshold; /* interpolation threshold */
108eab0cc1SPeter Brune   char      prolongtype[256];
11b4dc3ebdSPeter Brune   PetscInt  nsmooths;         /* number of jacobi smoothings on the prolongator */
128e6d0c30SPeter Brune } PC_GAMG_Classical;
138e6d0c30SPeter Brune 
148eab0cc1SPeter Brune #undef __FUNCT__
158eab0cc1SPeter Brune #define __FUNCT__ "PCGAMGClassicalSetType"
167779008dSPeter Brune /*@C
178eab0cc1SPeter Brune    PCGAMGClassicalSetType - Sets the type of classical interpolation to use
188eab0cc1SPeter Brune 
198eab0cc1SPeter Brune    Collective on PC
208eab0cc1SPeter Brune 
218eab0cc1SPeter Brune    Input Parameters:
228eab0cc1SPeter Brune .  pc - the preconditioner context
238eab0cc1SPeter Brune 
248eab0cc1SPeter Brune    Options Database Key:
258eab0cc1SPeter Brune .  -pc_gamg_classical_type
268eab0cc1SPeter Brune 
278eab0cc1SPeter Brune    Level: intermediate
288eab0cc1SPeter Brune 
298eab0cc1SPeter Brune .seealso: ()
308eab0cc1SPeter Brune @*/
318eab0cc1SPeter Brune PetscErrorCode PCGAMGClassicalSetType(PC pc, PCGAMGClassicalType type)
328eab0cc1SPeter Brune {
338eab0cc1SPeter Brune   PetscErrorCode ierr;
348eab0cc1SPeter Brune 
358eab0cc1SPeter Brune   PetscFunctionBegin;
368eab0cc1SPeter Brune   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
378eab0cc1SPeter Brune   ierr = PetscTryMethod(pc,"PCGAMGClassicalSetType_C",(PC,PCGAMGType),(pc,type));CHKERRQ(ierr);
388eab0cc1SPeter Brune   PetscFunctionReturn(0);
398eab0cc1SPeter Brune }
408eab0cc1SPeter Brune 
418eab0cc1SPeter Brune #undef __FUNCT__
42c60c7ad4SBarry Smith #define __FUNCT__ "PCGAMGClassicalGetType"
43c60c7ad4SBarry Smith /*@C
44c60c7ad4SBarry Smith    PCGAMGClassicalGetType - Gets the type of classical interpolation to use
45c60c7ad4SBarry Smith 
46c60c7ad4SBarry Smith    Collective on PC
47c60c7ad4SBarry Smith 
48c60c7ad4SBarry Smith    Input Parameter:
49c60c7ad4SBarry Smith .  pc - the preconditioner context
50c60c7ad4SBarry Smith 
51c60c7ad4SBarry Smith    Output Parameter:
52c60c7ad4SBarry Smith .  type - the type used
53c60c7ad4SBarry Smith 
54c60c7ad4SBarry Smith    Level: intermediate
55c60c7ad4SBarry Smith 
56c60c7ad4SBarry Smith .seealso: ()
57c60c7ad4SBarry Smith @*/
58c60c7ad4SBarry Smith PetscErrorCode PCGAMGClassicalGetType(PC pc, PCGAMGClassicalType *type)
59c60c7ad4SBarry Smith {
60c60c7ad4SBarry Smith   PetscErrorCode ierr;
61c60c7ad4SBarry Smith 
62c60c7ad4SBarry Smith   PetscFunctionBegin;
63c60c7ad4SBarry Smith   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
64c60c7ad4SBarry Smith   ierr = PetscUseMethod(pc,"PCGAMGClassicalGetType_C",(PC,PCGAMGType*),(pc,type));CHKERRQ(ierr);
65c60c7ad4SBarry Smith   PetscFunctionReturn(0);
66c60c7ad4SBarry Smith }
67c60c7ad4SBarry Smith 
68c60c7ad4SBarry Smith #undef __FUNCT__
698eab0cc1SPeter Brune #define __FUNCT__ "PCGAMGClassicalSetType_GAMG"
708eab0cc1SPeter Brune static PetscErrorCode PCGAMGClassicalSetType_GAMG(PC pc, PCGAMGClassicalType type)
718eab0cc1SPeter Brune {
728eab0cc1SPeter Brune   PetscErrorCode    ierr;
738eab0cc1SPeter Brune   PC_MG             *mg          = (PC_MG*)pc->data;
748eab0cc1SPeter Brune   PC_GAMG           *pc_gamg     = (PC_GAMG*)mg->innerctx;
758eab0cc1SPeter Brune   PC_GAMG_Classical *cls         = (PC_GAMG_Classical*)pc_gamg->subctx;
768eab0cc1SPeter Brune 
778eab0cc1SPeter Brune   PetscFunctionBegin;
788eab0cc1SPeter Brune   ierr = PetscStrcpy(cls->prolongtype,type);CHKERRQ(ierr);
798eab0cc1SPeter Brune   PetscFunctionReturn(0);
808eab0cc1SPeter Brune }
818e6d0c30SPeter Brune 
828e6d0c30SPeter Brune #undef __FUNCT__
83c60c7ad4SBarry Smith #define __FUNCT__ "PCGAMGClassicalGetType_GAMG"
84c60c7ad4SBarry Smith static PetscErrorCode PCGAMGClassicalGetType_GAMG(PC pc, PCGAMGClassicalType *type)
85c60c7ad4SBarry Smith {
86c60c7ad4SBarry Smith   PC_MG             *mg          = (PC_MG*)pc->data;
87c60c7ad4SBarry Smith   PC_GAMG           *pc_gamg     = (PC_GAMG*)mg->innerctx;
88c60c7ad4SBarry Smith   PC_GAMG_Classical *cls         = (PC_GAMG_Classical*)pc_gamg->subctx;
89c60c7ad4SBarry Smith 
90c60c7ad4SBarry Smith   PetscFunctionBegin;
91c60c7ad4SBarry Smith   *type = cls->prolongtype;
92c60c7ad4SBarry Smith   PetscFunctionReturn(0);
93c60c7ad4SBarry Smith }
94c60c7ad4SBarry Smith 
95c60c7ad4SBarry Smith #undef __FUNCT__
968e6d0c30SPeter Brune #define __FUNCT__ "PCGAMGGraph_Classical"
972adfe9d3SBarry Smith PetscErrorCode PCGAMGGraph_Classical(PC pc,Mat A,Mat *G)
988e6d0c30SPeter Brune {
99550383edSPeter Brune   PetscInt          s,f,n,idx,lidx,gidx;
100e5a0faa4SPeter Brune   PetscInt          r,c,ncols;
1018e6d0c30SPeter Brune   const PetscInt    *rcol;
1028e6d0c30SPeter Brune   const PetscScalar *rval;
103e5a0faa4SPeter Brune   PetscInt          *gcol;
1048e6d0c30SPeter Brune   PetscScalar       *gval;
105e5a0faa4SPeter Brune   PetscReal         rmax;
106550383edSPeter Brune   PetscInt          cmax = 0;
1078e6d0c30SPeter Brune   PC_MG             *mg;
1088e6d0c30SPeter Brune   PC_GAMG           *gamg;
1098e6d0c30SPeter Brune   PetscErrorCode    ierr;
1108e6d0c30SPeter Brune   PetscInt          *gsparse,*lsparse;
111e5a0faa4SPeter Brune   PetscScalar       *Amax;
1128e6d0c30SPeter Brune   MatType           mtype;
1138e6d0c30SPeter Brune 
1148e6d0c30SPeter Brune   PetscFunctionBegin;
1158e6d0c30SPeter Brune   mg   = (PC_MG *)pc->data;
1168e6d0c30SPeter Brune   gamg = (PC_GAMG *)mg->innerctx;
1178e6d0c30SPeter Brune 
1188e6d0c30SPeter Brune   ierr = MatGetOwnershipRange(A,&s,&f);CHKERRQ(ierr);
119550383edSPeter Brune   n=f-s;
120e632b94dSBarry Smith   ierr = PetscMalloc3(n,&lsparse,n,&gsparse,n,&Amax);CHKERRQ(ierr);
1218e6d0c30SPeter Brune 
122550383edSPeter Brune   for (r = 0;r < n;r++) {
1238e6d0c30SPeter Brune     lsparse[r] = 0;
124550383edSPeter Brune     gsparse[r] = 0;
1258e6d0c30SPeter Brune   }
1268e6d0c30SPeter Brune 
127550383edSPeter Brune   for (r = s;r < f;r++) {
128e5a0faa4SPeter Brune     /* determine the maximum off-diagonal in each row */
129e5a0faa4SPeter Brune     rmax = 0.;
130550383edSPeter Brune     ierr = MatGetRow(A,r,&ncols,&rcol,&rval);CHKERRQ(ierr);
131e5a0faa4SPeter Brune     for (c = 0; c < ncols; c++) {
1321ce39c63SPeter Brune       if (PetscRealPart(-rval[c]) > rmax && rcol[c] != r) {
1331ce39c63SPeter Brune         rmax = PetscRealPart(-rval[c]);
134e5a0faa4SPeter Brune       }
135e5a0faa4SPeter Brune     }
136550383edSPeter Brune     Amax[r-s] = rmax;
137550383edSPeter Brune     if (ncols > cmax) cmax = ncols;
138550383edSPeter Brune     lidx = 0;
139550383edSPeter Brune     gidx = 0;
140e5a0faa4SPeter Brune     /* create the local and global sparsity patterns */
1418e6d0c30SPeter Brune     for (c = 0; c < ncols; c++) {
142d1f1af5eSPeter Brune       if (PetscRealPart(-rval[c]) > gamg->threshold*PetscRealPart(Amax[r-s]) || rcol[c] == r) {
143550383edSPeter Brune         if (rcol[c] < f && rcol[c] >= s) {
144550383edSPeter Brune           lidx++;
145550383edSPeter Brune         } else {
146550383edSPeter Brune           gidx++;
1478e6d0c30SPeter Brune         }
1488e6d0c30SPeter Brune       }
1498e6d0c30SPeter Brune     }
150550383edSPeter Brune     ierr = MatRestoreRow(A,r,&ncols,&rcol,&rval);CHKERRQ(ierr);
151550383edSPeter Brune     lsparse[r-s] = lidx;
152550383edSPeter Brune     gsparse[r-s] = gidx;
1538e6d0c30SPeter Brune   }
154e632b94dSBarry Smith   ierr = PetscMalloc2(cmax,&gval,cmax,&gcol);CHKERRQ(ierr);
155e5a0faa4SPeter Brune 
1568e6d0c30SPeter Brune   ierr = MatCreate(PetscObjectComm((PetscObject)A),G); CHKERRQ(ierr);
1578e6d0c30SPeter Brune   ierr = MatGetType(A,&mtype);CHKERRQ(ierr);
1588e6d0c30SPeter Brune   ierr = MatSetType(*G,mtype);CHKERRQ(ierr);
159550383edSPeter Brune   ierr = MatSetSizes(*G,n,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
1608e6d0c30SPeter Brune   ierr = MatMPIAIJSetPreallocation(*G,0,lsparse,0,gsparse);CHKERRQ(ierr);
1618e6d0c30SPeter Brune   ierr = MatSeqAIJSetPreallocation(*G,0,lsparse);CHKERRQ(ierr);
1628e6d0c30SPeter Brune   for (r = s;r < f;r++) {
1638e6d0c30SPeter Brune     ierr = MatGetRow(A,r,&ncols,&rcol,&rval);CHKERRQ(ierr);
1648e6d0c30SPeter Brune     idx = 0;
1658e6d0c30SPeter Brune     for (c = 0; c < ncols; c++) {
1668e6d0c30SPeter Brune       /* classical strength of connection */
167d1f1af5eSPeter Brune       if (PetscRealPart(-rval[c]) > gamg->threshold*PetscRealPart(Amax[r-s]) || rcol[c] == r) {
1688e6d0c30SPeter Brune         gcol[idx] = rcol[c];
1698e6d0c30SPeter Brune         gval[idx] = rval[c];
1708e6d0c30SPeter Brune         idx++;
1718e6d0c30SPeter Brune       }
1728e6d0c30SPeter Brune     }
1738e6d0c30SPeter Brune     ierr = MatSetValues(*G,1,&r,idx,gcol,gval,INSERT_VALUES);CHKERRQ(ierr);
1748e6d0c30SPeter Brune     ierr = MatRestoreRow(A,r,&ncols,&rcol,&rval);CHKERRQ(ierr);
1758e6d0c30SPeter Brune   }
1768e6d0c30SPeter Brune   ierr = MatAssemblyBegin(*G, MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
1778e6d0c30SPeter Brune   ierr = MatAssemblyEnd(*G, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1788e6d0c30SPeter Brune 
179e632b94dSBarry Smith   ierr = PetscFree2(gval,gcol);CHKERRQ(ierr);
180e632b94dSBarry Smith   ierr = PetscFree3(lsparse,gsparse,Amax);CHKERRQ(ierr);
1818e6d0c30SPeter Brune   PetscFunctionReturn(0);
1828e6d0c30SPeter Brune }
1838e6d0c30SPeter Brune 
1848e6d0c30SPeter Brune 
1858e6d0c30SPeter Brune #undef __FUNCT__
1868e6d0c30SPeter Brune #define __FUNCT__ "PCGAMGCoarsen_Classical"
1878e6d0c30SPeter Brune PetscErrorCode PCGAMGCoarsen_Classical(PC pc,Mat *G,PetscCoarsenData **agg_lists)
1888e6d0c30SPeter Brune {
1898e6d0c30SPeter Brune   PetscErrorCode   ierr;
1908e6d0c30SPeter Brune   MatCoarsen       crs;
1918e6d0c30SPeter Brune   MPI_Comm         fcomm = ((PetscObject)pc)->comm;
1928e6d0c30SPeter Brune 
1938e6d0c30SPeter Brune   PetscFunctionBegin;
1948e6d0c30SPeter Brune 
1958e6d0c30SPeter Brune 
1968e6d0c30SPeter Brune   /* construct the graph if necessary */
1978e6d0c30SPeter Brune   if (!G) {
1988e6d0c30SPeter Brune     SETERRQ(fcomm,PETSC_ERR_ARG_WRONGSTATE,"Must set Graph in PC in PCGAMG before coarsening");
1998e6d0c30SPeter Brune   }
2008e6d0c30SPeter Brune 
2018e6d0c30SPeter Brune   ierr = MatCoarsenCreate(fcomm,&crs);CHKERRQ(ierr);
2028e6d0c30SPeter Brune   ierr = MatCoarsenSetFromOptions(crs);CHKERRQ(ierr);
2038e6d0c30SPeter Brune   ierr = MatCoarsenSetAdjacency(crs,*G);CHKERRQ(ierr);
2048e6d0c30SPeter Brune   ierr = MatCoarsenSetStrictAggs(crs,PETSC_TRUE);CHKERRQ(ierr);
2058e6d0c30SPeter Brune   ierr = MatCoarsenApply(crs);CHKERRQ(ierr);
2068e6d0c30SPeter Brune   ierr = MatCoarsenGetData(crs,agg_lists);CHKERRQ(ierr);
2078e6d0c30SPeter Brune   ierr = MatCoarsenDestroy(&crs);CHKERRQ(ierr);
2088e6d0c30SPeter Brune 
2098e6d0c30SPeter Brune   PetscFunctionReturn(0);
2108e6d0c30SPeter Brune }
2118e6d0c30SPeter Brune 
2128e6d0c30SPeter Brune #undef __FUNCT__
2138eab0cc1SPeter Brune #define __FUNCT__ "PCGAMGProlongator_Classical_Direct"
2142adfe9d3SBarry Smith PetscErrorCode PCGAMGProlongator_Classical_Direct(PC pc, Mat A, Mat G, PetscCoarsenData *agg_lists,Mat *P)
2158e6d0c30SPeter Brune {
2168e6d0c30SPeter Brune   PetscErrorCode    ierr;
2171ce39c63SPeter Brune   PC_MG             *mg          = (PC_MG*)pc->data;
2181ce39c63SPeter Brune   PC_GAMG           *gamg        = (PC_GAMG*)mg->innerctx;
21963b0c588SPeter Brune   PetscBool         iscoarse,isMPIAIJ,isSEQAIJ;
22063b0c588SPeter Brune   PetscInt          fn,cn,fs,fe,cs,ce,i,j,ncols,col,row_f,row_c,cmax=0,idx,noff;
22163b0c588SPeter Brune   PetscInt          *lcid,*gcid,*lsparse,*gsparse,*colmap,*pcols;
22263b0c588SPeter Brune   const PetscInt    *rcol;
22363b0c588SPeter Brune   PetscReal         *Amax_pos,*Amax_neg;
22463b0c588SPeter Brune   PetscScalar       g_pos,g_neg,a_pos,a_neg,diag,invdiag,alpha,beta,pij;
22563b0c588SPeter Brune   PetscScalar       *pvals;
22663b0c588SPeter Brune   const PetscScalar *rval;
22763b0c588SPeter Brune   Mat               lA,gA=NULL;
22863b0c588SPeter Brune   MatType           mtype;
22963b0c588SPeter Brune   Vec               C,lvec;
23087b9b13cSPeter Brune   PetscLayout       clayout;
23187b9b13cSPeter Brune   PetscSF           sf;
23287b9b13cSPeter Brune   Mat_MPIAIJ        *mpiaij;
2338e6d0c30SPeter Brune 
2348e6d0c30SPeter Brune   PetscFunctionBegin;
2358e6d0c30SPeter Brune   ierr = MatGetOwnershipRange(A,&fs,&fe);CHKERRQ(ierr);
23687b9b13cSPeter Brune   fn = fe-fs;
23787b9b13cSPeter Brune   ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIAIJ,&isMPIAIJ);CHKERRQ(ierr);
23887b9b13cSPeter Brune   ierr = PetscObjectTypeCompare((PetscObject)A,MATSEQAIJ,&isSEQAIJ);CHKERRQ(ierr);
23987b9b13cSPeter Brune   if (!isMPIAIJ && !isSEQAIJ) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Classical AMG requires MPIAIJ matrix");
24087b9b13cSPeter Brune   if (isMPIAIJ) {
24187b9b13cSPeter Brune     mpiaij = (Mat_MPIAIJ*)A->data;
24287b9b13cSPeter Brune     lA = mpiaij->A;
24387b9b13cSPeter Brune     gA = mpiaij->B;
24487b9b13cSPeter Brune     lvec = mpiaij->lvec;
24587b9b13cSPeter Brune     ierr = VecGetSize(lvec,&noff);CHKERRQ(ierr);
24687b9b13cSPeter Brune     colmap = mpiaij->garray;
24787b9b13cSPeter Brune     ierr = MatGetLayouts(A,NULL,&clayout);CHKERRQ(ierr);
24887b9b13cSPeter Brune     ierr = PetscSFCreate(PetscObjectComm((PetscObject)A),&sf);CHKERRQ(ierr);
24987b9b13cSPeter Brune     ierr = PetscSFSetGraphLayout(sf,clayout,noff,NULL,PETSC_COPY_VALUES,colmap);CHKERRQ(ierr);
25087b9b13cSPeter Brune     ierr = PetscMalloc1(noff,&gcid);CHKERRQ(ierr);
25187b9b13cSPeter Brune   } else {
25287b9b13cSPeter Brune     lA = A;
25387b9b13cSPeter Brune   }
254e632b94dSBarry Smith   ierr = PetscMalloc5(fn,&lsparse,fn,&gsparse,fn,&lcid,fn,&Amax_pos,fn,&Amax_neg);CHKERRQ(ierr);
2558e6d0c30SPeter Brune 
2568e6d0c30SPeter Brune   /* count the number of coarse unknowns */
2578e6d0c30SPeter Brune   cn = 0;
2588e6d0c30SPeter Brune   for (i=0;i<fn;i++) {
2598e6d0c30SPeter Brune     /* filter out singletons */
2608e6d0c30SPeter Brune     ierr = PetscCDEmptyAt(agg_lists,i,&iscoarse); CHKERRQ(ierr);
2618e6d0c30SPeter Brune     lcid[i] = -1;
2628e6d0c30SPeter Brune     if (!iscoarse) {
2638e6d0c30SPeter Brune       cn++;
2648e6d0c30SPeter Brune     }
2658e6d0c30SPeter Brune   }
2668e6d0c30SPeter Brune 
2678e6d0c30SPeter Brune    /* create the coarse vector */
26887b9b13cSPeter Brune   ierr = VecCreateMPI(PetscObjectComm((PetscObject)A),cn,PETSC_DECIDE,&C);CHKERRQ(ierr);
2698e6d0c30SPeter Brune   ierr = VecGetOwnershipRange(C,&cs,&ce);CHKERRQ(ierr);
2708e6d0c30SPeter Brune 
2718e6d0c30SPeter Brune   cn = 0;
2728e6d0c30SPeter Brune   for (i=0;i<fn;i++) {
2738e6d0c30SPeter Brune     ierr = PetscCDEmptyAt(agg_lists,i,&iscoarse); CHKERRQ(ierr);
2748e6d0c30SPeter Brune     if (!iscoarse) {
2758e6d0c30SPeter Brune       lcid[i] = cs+cn;
2768e6d0c30SPeter Brune       cn++;
2778e6d0c30SPeter Brune     } else {
2788e6d0c30SPeter Brune       lcid[i] = -1;
2798e6d0c30SPeter Brune     }
2808e6d0c30SPeter Brune   }
2818e6d0c30SPeter Brune 
28287b9b13cSPeter Brune   if (gA) {
28387b9b13cSPeter Brune     ierr = PetscSFBcastBegin(sf,MPIU_INT,lcid,gcid);CHKERRQ(ierr);
28487b9b13cSPeter Brune     ierr = PetscSFBcastEnd(sf,MPIU_INT,lcid,gcid);CHKERRQ(ierr);
28587b9b13cSPeter Brune   }
2868e6d0c30SPeter Brune 
2871ce39c63SPeter Brune   /* determine the biggest off-diagonal entries in each row */
2881ce39c63SPeter Brune   for (i=fs;i<fe;i++) {
2891ce39c63SPeter Brune     Amax_pos[i-fs] = 0.;
2901ce39c63SPeter Brune     Amax_neg[i-fs] = 0.;
2911ce39c63SPeter Brune     ierr = MatGetRow(A,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
2921ce39c63SPeter Brune     for(j=0;j<ncols;j++){
2931ce39c63SPeter Brune       if ((PetscRealPart(-rval[j]) > Amax_neg[i-fs]) && i != rcol[j]) Amax_neg[i-fs] = PetscAbsScalar(rval[j]);
2941ce39c63SPeter Brune       if ((PetscRealPart(rval[j])  > Amax_pos[i-fs]) && i != rcol[j]) Amax_pos[i-fs] = PetscAbsScalar(rval[j]);
2951ce39c63SPeter Brune     }
2961ce39c63SPeter Brune     if (ncols > cmax) cmax = ncols;
2971ce39c63SPeter Brune     ierr = MatRestoreRow(A,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
2981ce39c63SPeter Brune   }
299e632b94dSBarry Smith   ierr = PetscMalloc2(cmax,&pcols,cmax,&pvals);CHKERRQ(ierr);
3008e6d0c30SPeter Brune   ierr = VecDestroy(&C);CHKERRQ(ierr);
3018e6d0c30SPeter Brune 
3028e6d0c30SPeter Brune   /* count the on and off processor sparsity patterns for the prolongator */
3038e6d0c30SPeter Brune   for (i=0;i<fn;i++) {
3048e6d0c30SPeter Brune     /* on */
3058e6d0c30SPeter Brune     lsparse[i] = 0;
306e5a0faa4SPeter Brune     gsparse[i] = 0;
3078e6d0c30SPeter Brune     if (lcid[i] >= 0) {
3088e6d0c30SPeter Brune       lsparse[i] = 1;
3098e6d0c30SPeter Brune       gsparse[i] = 0;
3108e6d0c30SPeter Brune     } else {
3111ce39c63SPeter Brune       ierr = MatGetRow(lA,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
3128e6d0c30SPeter Brune       for (j = 0;j < ncols;j++) {
3131ce39c63SPeter Brune         col = rcol[j];
3141ce39c63SPeter Brune         if (lcid[col] >= 0 && (PetscRealPart(rval[j]) > gamg->threshold*Amax_pos[i] || PetscRealPart(-rval[j]) > gamg->threshold*Amax_neg[i])) {
3158e6d0c30SPeter Brune           lsparse[i] += 1;
3168e6d0c30SPeter Brune         }
3178e6d0c30SPeter Brune       }
3181ce39c63SPeter Brune       ierr = MatRestoreRow(lA,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
3198e6d0c30SPeter Brune       /* off */
3201ce39c63SPeter Brune       if (gA) {
3211ce39c63SPeter Brune         ierr = MatGetRow(gA,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
3228e6d0c30SPeter Brune         for (j = 0; j < ncols; j++) {
3231ce39c63SPeter Brune           col = rcol[j];
3241ce39c63SPeter Brune           if (gcid[col] >= 0 && (PetscRealPart(rval[j]) > gamg->threshold*Amax_pos[i] || PetscRealPart(-rval[j]) > gamg->threshold*Amax_neg[i])) {
3258e6d0c30SPeter Brune             gsparse[i] += 1;
3268e6d0c30SPeter Brune           }
3278e6d0c30SPeter Brune         }
3281ce39c63SPeter Brune         ierr = MatRestoreRow(gA,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
3298e6d0c30SPeter Brune       }
3308e6d0c30SPeter Brune     }
3311ce39c63SPeter Brune   }
3328e6d0c30SPeter Brune 
3338e6d0c30SPeter Brune   /* preallocate and create the prolongator */
33487b9b13cSPeter Brune   ierr = MatCreate(PetscObjectComm((PetscObject)A),P); CHKERRQ(ierr);
3358e6d0c30SPeter Brune   ierr = MatGetType(G,&mtype);CHKERRQ(ierr);
3368e6d0c30SPeter Brune   ierr = MatSetType(*P,mtype);CHKERRQ(ierr);
3378e6d0c30SPeter Brune   ierr = MatSetSizes(*P,fn,cn,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
3388e6d0c30SPeter Brune   ierr = MatMPIAIJSetPreallocation(*P,0,lsparse,0,gsparse);CHKERRQ(ierr);
3398e6d0c30SPeter Brune   ierr = MatSeqAIJSetPreallocation(*P,0,lsparse);CHKERRQ(ierr);
3408e6d0c30SPeter Brune 
3418e6d0c30SPeter Brune   /* loop over local fine nodes -- get the diagonal, the sum of positive and negative strong and weak weights, and set up the row */
3428e6d0c30SPeter Brune   for (i = 0;i < fn;i++) {
3438e6d0c30SPeter Brune     /* determine on or off */
3448e6d0c30SPeter Brune     row_f = i + fs;
3458e6d0c30SPeter Brune     row_c = lcid[i];
3468e6d0c30SPeter Brune     if (row_c >= 0) {
3478e6d0c30SPeter Brune       pij = 1.;
3488e6d0c30SPeter Brune       ierr = MatSetValues(*P,1,&row_f,1,&row_c,&pij,INSERT_VALUES);CHKERRQ(ierr);
3498e6d0c30SPeter Brune     } else {
3508e6d0c30SPeter Brune       g_pos = 0.;
3518e6d0c30SPeter Brune       g_neg = 0.;
3528e6d0c30SPeter Brune       a_pos = 0.;
3538e6d0c30SPeter Brune       a_neg = 0.;
3548e6d0c30SPeter Brune       diag = 0.;
3558e6d0c30SPeter Brune 
3561ce39c63SPeter Brune       /* local connections */
3578e6d0c30SPeter Brune       ierr = MatGetRow(lA,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
3581ce39c63SPeter Brune       for (j = 0; j < ncols; j++) {
3591ce39c63SPeter Brune         col = rcol[j];
3601ce39c63SPeter Brune         if (lcid[col] >= 0 && (PetscRealPart(rval[j]) > gamg->threshold*Amax_pos[i] || PetscRealPart(-rval[j]) > gamg->threshold*Amax_neg[i])) {
3611ce39c63SPeter Brune           if (PetscRealPart(rval[j]) > 0.) {
3621ce39c63SPeter Brune             g_pos += rval[j];
3638e6d0c30SPeter Brune           } else {
3641ce39c63SPeter Brune             g_neg += rval[j];
3658e6d0c30SPeter Brune           }
3661ce39c63SPeter Brune         }
3671ce39c63SPeter Brune         if (col != i) {
3681ce39c63SPeter Brune           if (PetscRealPart(rval[j]) > 0.) {
3691ce39c63SPeter Brune             a_pos += rval[j];
3701ce39c63SPeter Brune           } else {
3711ce39c63SPeter Brune             a_neg += rval[j];
3721ce39c63SPeter Brune           }
3731ce39c63SPeter Brune         } else {
3741ce39c63SPeter Brune           diag = rval[j];
3751ce39c63SPeter Brune         }
3768e6d0c30SPeter Brune       }
3778e6d0c30SPeter Brune       ierr = MatRestoreRow(lA,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
3788e6d0c30SPeter Brune 
3791ce39c63SPeter Brune       /* ghosted connections */
3808e6d0c30SPeter Brune       if (gA) {
3818e6d0c30SPeter Brune         ierr = MatGetRow(gA,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
3821ce39c63SPeter Brune         for (j = 0; j < ncols; j++) {
3831ce39c63SPeter Brune           col = rcol[j];
3841ce39c63SPeter Brune           if (gcid[col] >= 0 && (PetscRealPart(rval[j]) > gamg->threshold*Amax_pos[i] || PetscRealPart(-rval[j]) > gamg->threshold*Amax_neg[i])) {
3851ce39c63SPeter Brune             if (PetscRealPart(rval[j]) > 0.) {
3861ce39c63SPeter Brune               g_pos += rval[j];
3878e6d0c30SPeter Brune             } else {
3881ce39c63SPeter Brune               g_neg += rval[j];
3898e6d0c30SPeter Brune             }
3901ce39c63SPeter Brune           }
3911ce39c63SPeter Brune           if (PetscRealPart(rval[j]) > 0.) {
3921ce39c63SPeter Brune             a_pos += rval[j];
3931ce39c63SPeter Brune           } else {
3941ce39c63SPeter Brune             a_neg += rval[j];
3951ce39c63SPeter Brune           }
3968e6d0c30SPeter Brune         }
3978e6d0c30SPeter Brune         ierr = MatRestoreRow(gA,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
3988e6d0c30SPeter Brune       }
3998e6d0c30SPeter Brune 
4008e6d0c30SPeter Brune       if (g_neg == 0.) {
4018e6d0c30SPeter Brune         alpha = 0.;
4028e6d0c30SPeter Brune       } else {
4038e6d0c30SPeter Brune         alpha = -a_neg/g_neg;
4048e6d0c30SPeter Brune       }
4058e6d0c30SPeter Brune 
4068e6d0c30SPeter Brune       if (g_pos == 0.) {
4078e6d0c30SPeter Brune         diag += a_pos;
4088e6d0c30SPeter Brune         beta = 0.;
4098e6d0c30SPeter Brune       } else {
4108e6d0c30SPeter Brune         beta = -a_pos/g_pos;
4118e6d0c30SPeter Brune       }
412e5a0faa4SPeter Brune       if (diag == 0.) {
413e5a0faa4SPeter Brune         invdiag = 0.;
414e5a0faa4SPeter Brune       } else invdiag = 1. / diag;
4158e6d0c30SPeter Brune       /* on */
4161ce39c63SPeter Brune       ierr = MatGetRow(lA,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
4178e6d0c30SPeter Brune       idx = 0;
4188e6d0c30SPeter Brune       for (j = 0;j < ncols;j++) {
4191ce39c63SPeter Brune         col = rcol[j];
4201ce39c63SPeter Brune         if (lcid[col] >= 0 && (PetscRealPart(rval[j]) > gamg->threshold*Amax_pos[i] || PetscRealPart(-rval[j]) > gamg->threshold*Amax_neg[i])) {
4218e6d0c30SPeter Brune           row_f = i + fs;
4228e6d0c30SPeter Brune           row_c = lcid[col];
4238e6d0c30SPeter Brune           /* set the values for on-processor ones */
4241ce39c63SPeter Brune           if (PetscRealPart(rval[j]) < 0.) {
4251ce39c63SPeter Brune             pij = rval[j]*alpha*invdiag;
4268e6d0c30SPeter Brune           } else {
4271ce39c63SPeter Brune             pij = rval[j]*beta*invdiag;
4288e6d0c30SPeter Brune           }
4298e6d0c30SPeter Brune           if (PetscAbsScalar(pij) != 0.) {
4308e6d0c30SPeter Brune             pvals[idx] = pij;
4318e6d0c30SPeter Brune             pcols[idx] = row_c;
4328e6d0c30SPeter Brune             idx++;
4338e6d0c30SPeter Brune           }
4348e6d0c30SPeter Brune         }
4358e6d0c30SPeter Brune       }
4361ce39c63SPeter Brune       ierr = MatRestoreRow(lA,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
4378e6d0c30SPeter Brune       /* off */
4381ce39c63SPeter Brune       if (gA) {
4391ce39c63SPeter Brune         ierr = MatGetRow(gA,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
4408e6d0c30SPeter Brune         for (j = 0; j < ncols; j++) {
4411ce39c63SPeter Brune           col = rcol[j];
4421ce39c63SPeter Brune           if (gcid[col] >= 0 && (PetscRealPart(rval[j]) > gamg->threshold*Amax_pos[i] || PetscRealPart(-rval[j]) > gamg->threshold*Amax_neg[i])) {
4438e6d0c30SPeter Brune             row_f = i + fs;
4448e6d0c30SPeter Brune             row_c = gcid[col];
4458e6d0c30SPeter Brune             /* set the values for on-processor ones */
4461ce39c63SPeter Brune             if (PetscRealPart(rval[j]) < 0.) {
4471ce39c63SPeter Brune               pij = rval[j]*alpha*invdiag;
4488e6d0c30SPeter Brune             } else {
4491ce39c63SPeter Brune               pij = rval[j]*beta*invdiag;
4508e6d0c30SPeter Brune             }
4518e6d0c30SPeter Brune             if (PetscAbsScalar(pij) != 0.) {
4528e6d0c30SPeter Brune               pvals[idx] = pij;
4538e6d0c30SPeter Brune               pcols[idx] = row_c;
4548e6d0c30SPeter Brune               idx++;
4558e6d0c30SPeter Brune             }
4568e6d0c30SPeter Brune           }
4578e6d0c30SPeter Brune         }
4581ce39c63SPeter Brune         ierr = MatRestoreRow(gA,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
4593c9ab2c3SPeter Brune       }
4608e6d0c30SPeter Brune       ierr = MatSetValues(*P,1,&row_f,idx,pcols,pvals,INSERT_VALUES);CHKERRQ(ierr);
4618e6d0c30SPeter Brune     }
4628e6d0c30SPeter Brune   }
4633c9ab2c3SPeter Brune 
4648e6d0c30SPeter Brune   ierr = MatAssemblyBegin(*P, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
4658e6d0c30SPeter Brune   ierr = MatAssemblyEnd(*P, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
4668e6d0c30SPeter Brune 
467e632b94dSBarry Smith   ierr = PetscFree5(lsparse,gsparse,lcid,Amax_pos,Amax_neg);CHKERRQ(ierr);
468e632b94dSBarry Smith 
469e632b94dSBarry Smith   ierr = PetscFree2(pcols,pvals);CHKERRQ(ierr);
47087b9b13cSPeter Brune   if (gA) {
47187b9b13cSPeter Brune     ierr = PetscSFDestroy(&sf);CHKERRQ(ierr);
47287b9b13cSPeter Brune     ierr = PetscFree(gcid);CHKERRQ(ierr);
47387b9b13cSPeter Brune   }
4748e6d0c30SPeter Brune 
4758e6d0c30SPeter Brune   PetscFunctionReturn(0);
4768e6d0c30SPeter Brune }
4778e6d0c30SPeter Brune 
4788e6d0c30SPeter Brune #undef __FUNCT__
479586a8384SPeter Brune #define __FUNCT__ "PCGAMGTruncateProlongator_Private"
480586a8384SPeter Brune PetscErrorCode PCGAMGTruncateProlongator_Private(PC pc,Mat *P)
481586a8384SPeter Brune {
482586a8384SPeter Brune   PetscInt          j,i,ps,pf,pn,pcs,pcf,pcn,idx,cmax;
483586a8384SPeter Brune   PetscErrorCode    ierr;
484586a8384SPeter Brune   const PetscScalar *pval;
485586a8384SPeter Brune   const PetscInt    *pcol;
486586a8384SPeter Brune   PetscScalar       *pnval;
487586a8384SPeter Brune   PetscInt          *pncol;
488586a8384SPeter Brune   PetscInt          ncols;
489586a8384SPeter Brune   Mat               Pnew;
490586a8384SPeter Brune   PetscInt          *lsparse,*gsparse;
491586a8384SPeter Brune   PetscReal         pmax_pos,pmax_neg,ptot_pos,ptot_neg,pthresh_pos,pthresh_neg;
492586a8384SPeter Brune   PC_MG             *mg          = (PC_MG*)pc->data;
493586a8384SPeter Brune   PC_GAMG           *pc_gamg     = (PC_GAMG*)mg->innerctx;
494586a8384SPeter Brune   PC_GAMG_Classical *cls         = (PC_GAMG_Classical*)pc_gamg->subctx;
495d9558ea9SBarry Smith   MatType           mtype;
496586a8384SPeter Brune 
497586a8384SPeter Brune   PetscFunctionBegin;
498586a8384SPeter Brune   /* trim and rescale with reallocation */
499586a8384SPeter Brune   ierr = MatGetOwnershipRange(*P,&ps,&pf);CHKERRQ(ierr);
500586a8384SPeter Brune   ierr = MatGetOwnershipRangeColumn(*P,&pcs,&pcf);CHKERRQ(ierr);
501586a8384SPeter Brune   pn = pf-ps;
502586a8384SPeter Brune   pcn = pcf-pcs;
503e632b94dSBarry Smith   ierr = PetscMalloc2(pn,&lsparse,pn,&gsparse);CHKERRQ(ierr);
504586a8384SPeter Brune   /* allocate */
505586a8384SPeter Brune   cmax = 0;
506586a8384SPeter Brune   for (i=ps;i<pf;i++) {
507b4dc3ebdSPeter Brune     lsparse[i-ps] = 0;
508b4dc3ebdSPeter Brune     gsparse[i-ps] = 0;
509586a8384SPeter Brune     ierr = MatGetRow(*P,i,&ncols,&pcol,&pval);CHKERRQ(ierr);
510586a8384SPeter Brune     if (ncols > cmax) {
511586a8384SPeter Brune       cmax = ncols;
512586a8384SPeter Brune     }
513586a8384SPeter Brune     pmax_pos = 0.;
514586a8384SPeter Brune     pmax_neg = 0.;
515586a8384SPeter Brune     for (j=0;j<ncols;j++) {
516586a8384SPeter Brune       if (PetscRealPart(pval[j]) > pmax_pos) {
517586a8384SPeter Brune         pmax_pos = PetscRealPart(pval[j]);
518586a8384SPeter Brune       } else if (PetscRealPart(pval[j]) < pmax_neg) {
519586a8384SPeter Brune         pmax_neg = PetscRealPart(pval[j]);
520586a8384SPeter Brune       }
521586a8384SPeter Brune     }
522586a8384SPeter Brune     for (j=0;j<ncols;j++) {
5238eab0cc1SPeter Brune       if (PetscRealPart(pval[j]) >= pmax_pos*cls->interp_threshold || PetscRealPart(pval[j]) <= pmax_neg*cls->interp_threshold) {
524b4dc3ebdSPeter Brune         if (pcol[j] >= pcs && pcol[j] < pcf) {
525b4dc3ebdSPeter Brune           lsparse[i-ps]++;
526586a8384SPeter Brune         } else {
527b4dc3ebdSPeter Brune           gsparse[i-ps]++;
528586a8384SPeter Brune         }
529586a8384SPeter Brune       }
530586a8384SPeter Brune     }
531586a8384SPeter Brune     ierr = MatRestoreRow(*P,i,&ncols,&pcol,&pval);CHKERRQ(ierr);
532586a8384SPeter Brune   }
533586a8384SPeter Brune 
534e632b94dSBarry Smith   ierr = PetscMalloc2(cmax,&pnval,cmax,&pncol);CHKERRQ(ierr);
535586a8384SPeter Brune 
536d9558ea9SBarry Smith   ierr = MatGetType(*P,&mtype);CHKERRQ(ierr);
537586a8384SPeter Brune   ierr = MatCreate(PetscObjectComm((PetscObject)*P),&Pnew);CHKERRQ(ierr);
538d9558ea9SBarry Smith   ierr = MatSetType(Pnew, mtype);CHKERRQ(ierr);
539586a8384SPeter Brune   ierr = MatSetSizes(Pnew,pn,pcn,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
540586a8384SPeter Brune   ierr = MatSeqAIJSetPreallocation(Pnew,0,lsparse);CHKERRQ(ierr);
541586a8384SPeter Brune   ierr = MatMPIAIJSetPreallocation(Pnew,0,lsparse,0,gsparse);CHKERRQ(ierr);
542586a8384SPeter Brune 
543586a8384SPeter Brune   for (i=ps;i<pf;i++) {
544586a8384SPeter Brune     ierr = MatGetRow(*P,i,&ncols,&pcol,&pval);CHKERRQ(ierr);
545586a8384SPeter Brune     pmax_pos = 0.;
546586a8384SPeter Brune     pmax_neg = 0.;
547586a8384SPeter Brune     for (j=0;j<ncols;j++) {
548586a8384SPeter Brune       if (PetscRealPart(pval[j]) > pmax_pos) {
549586a8384SPeter Brune         pmax_pos = PetscRealPart(pval[j]);
550586a8384SPeter Brune       } else if (PetscRealPart(pval[j]) < pmax_neg) {
551586a8384SPeter Brune         pmax_neg = PetscRealPart(pval[j]);
552586a8384SPeter Brune       }
553586a8384SPeter Brune     }
554586a8384SPeter Brune     pthresh_pos = 0.;
555586a8384SPeter Brune     pthresh_neg = 0.;
556586a8384SPeter Brune     ptot_pos = 0.;
557586a8384SPeter Brune     ptot_neg = 0.;
558586a8384SPeter Brune     for (j=0;j<ncols;j++) {
5598eab0cc1SPeter Brune       if (PetscRealPart(pval[j]) >= cls->interp_threshold*pmax_pos) {
560586a8384SPeter Brune         pthresh_pos += PetscRealPart(pval[j]);
5618eab0cc1SPeter Brune       } else if (PetscRealPart(pval[j]) <= cls->interp_threshold*pmax_neg) {
562586a8384SPeter Brune         pthresh_neg += PetscRealPart(pval[j]);
563586a8384SPeter Brune       }
564586a8384SPeter Brune       if (PetscRealPart(pval[j]) > 0.) {
565586a8384SPeter Brune         ptot_pos += PetscRealPart(pval[j]);
566586a8384SPeter Brune       } else {
567586a8384SPeter Brune         ptot_neg += PetscRealPart(pval[j]);
568586a8384SPeter Brune       }
569586a8384SPeter Brune     }
5706bd8ea90SPeter Brune     if (PetscAbsReal(pthresh_pos) > 0.) ptot_pos /= pthresh_pos;
5716bd8ea90SPeter Brune     if (PetscAbsReal(pthresh_neg) > 0.) ptot_neg /= pthresh_neg;
572586a8384SPeter Brune     idx=0;
573586a8384SPeter Brune     for (j=0;j<ncols;j++) {
5748eab0cc1SPeter Brune       if (PetscRealPart(pval[j]) >= pmax_pos*cls->interp_threshold) {
575586a8384SPeter Brune         pnval[idx] = ptot_pos*pval[j];
576586a8384SPeter Brune         pncol[idx] = pcol[j];
577586a8384SPeter Brune         idx++;
5788eab0cc1SPeter Brune       } else if (PetscRealPart(pval[j]) <= pmax_neg*cls->interp_threshold) {
579586a8384SPeter Brune         pnval[idx] = ptot_neg*pval[j];
580586a8384SPeter Brune         pncol[idx] = pcol[j];
581586a8384SPeter Brune         idx++;
582586a8384SPeter Brune       }
583586a8384SPeter Brune     }
584586a8384SPeter Brune     ierr = MatRestoreRow(*P,i,&ncols,&pcol,&pval);CHKERRQ(ierr);
585586a8384SPeter Brune     ierr = MatSetValues(Pnew,1,&i,idx,pncol,pnval,INSERT_VALUES);CHKERRQ(ierr);
586586a8384SPeter Brune   }
587586a8384SPeter Brune 
588586a8384SPeter Brune   ierr = MatAssemblyBegin(Pnew, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
589586a8384SPeter Brune   ierr = MatAssemblyEnd(Pnew, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
590586a8384SPeter Brune   ierr = MatDestroy(P);CHKERRQ(ierr);
591586a8384SPeter Brune 
592586a8384SPeter Brune   *P = Pnew;
593e632b94dSBarry Smith   ierr = PetscFree2(lsparse,gsparse);CHKERRQ(ierr);
594e632b94dSBarry Smith   ierr = PetscFree2(pnval,pncol);CHKERRQ(ierr);
595586a8384SPeter Brune   PetscFunctionReturn(0);
596586a8384SPeter Brune }
597586a8384SPeter Brune 
598586a8384SPeter Brune #undef __FUNCT__
5998eab0cc1SPeter Brune #define __FUNCT__ "PCGAMGProlongator_Classical_Standard"
6002adfe9d3SBarry Smith PetscErrorCode PCGAMGProlongator_Classical_Standard(PC pc, Mat A, Mat G, PetscCoarsenData *agg_lists,Mat *P)
601f9a65ec8SPeter Brune {
602f9a65ec8SPeter Brune   PetscErrorCode    ierr;
603c634539dSPeter Brune   Mat               lA,*lAs;
604f9a65ec8SPeter Brune   MatType           mtype;
60563b0c588SPeter Brune   Vec               cv;
60663b0c588SPeter Brune   PetscInt          *gcid,*lcid,*lsparse,*gsparse,*picol;
607420cd23fSPeter Brune   PetscInt          fs,fe,cs,ce,nl,i,j,k,li,lni,ci,ncols,maxcols,fn,cn,cid;
608420cd23fSPeter Brune   PetscMPIInt       size;
60963b0c588SPeter Brune   const PetscInt    *lidx,*icol,*gidx;
61063b0c588SPeter Brune   PetscBool         iscoarse;
61163b0c588SPeter Brune   PetscScalar       vi,pentry,pjentry;
61263b0c588SPeter Brune   PetscScalar       *pcontrib,*pvcol;
61363b0c588SPeter Brune   const PetscScalar *vcol;
614ed4e82eaSPeter Brune   PetscReal         diag,jdiag,jwttotal;
615f9a65ec8SPeter Brune   PetscInt          pncols;
616c634539dSPeter Brune   PetscSF           sf;
617c634539dSPeter Brune   PetscLayout       clayout;
61863b0c588SPeter Brune   IS                lis;
619f9a65ec8SPeter Brune 
620f9a65ec8SPeter Brune   PetscFunctionBegin;
621c634539dSPeter Brune   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
622f9a65ec8SPeter Brune   ierr = MatGetOwnershipRange(A,&fs,&fe);CHKERRQ(ierr);
623f9a65ec8SPeter Brune   fn = fe-fs;
624f9a65ec8SPeter Brune   ierr = ISCreateStride(PETSC_COMM_SELF,fe-fs,fs,1,&lis);CHKERRQ(ierr);
625c634539dSPeter Brune   if (size > 1) {
626c634539dSPeter Brune     ierr = MatGetLayouts(A,NULL,&clayout);CHKERRQ(ierr);
627f9a65ec8SPeter Brune     /* increase the overlap by two to get neighbors of neighbors */
628f9a65ec8SPeter Brune     ierr = MatIncreaseOverlap(A,1,&lis,2);CHKERRQ(ierr);
629f9a65ec8SPeter Brune     ierr = ISSort(lis);CHKERRQ(ierr);
630f9a65ec8SPeter Brune     /* get the local part of A */
631c634539dSPeter Brune     ierr = MatGetSubMatrices(A,1,&lis,&lis,MAT_INITIAL_MATRIX,&lAs);CHKERRQ(ierr);
632c634539dSPeter Brune     lA = lAs[0];
633c634539dSPeter Brune     /* build an SF out of it */
634f9a65ec8SPeter Brune     ierr = ISGetLocalSize(lis,&nl);CHKERRQ(ierr);
635c634539dSPeter Brune     ierr = PetscSFCreate(PetscObjectComm((PetscObject)A),&sf);CHKERRQ(ierr);
636c634539dSPeter Brune     ierr = ISGetIndices(lis,&lidx);CHKERRQ(ierr);
637c634539dSPeter Brune     ierr = PetscSFSetGraphLayout(sf,clayout,nl,NULL,PETSC_COPY_VALUES,lidx);CHKERRQ(ierr);
638c634539dSPeter Brune     ierr = ISRestoreIndices(lis,&lidx);CHKERRQ(ierr);
639c634539dSPeter Brune   } else {
640c634539dSPeter Brune     lA = A;
641c634539dSPeter Brune     nl = fn;
642c634539dSPeter Brune   }
643c634539dSPeter Brune   /* create a communication structure for the overlapped portion and transmit coarse indices */
644e632b94dSBarry Smith   ierr = PetscMalloc3(fn,&lsparse,fn,&gsparse,nl,&pcontrib);CHKERRQ(ierr);
645f9a65ec8SPeter Brune   /* create coarse vector */
646f9a65ec8SPeter Brune   cn = 0;
647f9a65ec8SPeter Brune   for (i=0;i<fn;i++) {
648f9a65ec8SPeter Brune     ierr = PetscCDEmptyAt(agg_lists,i,&iscoarse);CHKERRQ(ierr);
649f9a65ec8SPeter Brune     if (!iscoarse) {
650f9a65ec8SPeter Brune       cn++;
651f9a65ec8SPeter Brune     }
652f9a65ec8SPeter Brune   }
653c634539dSPeter Brune   ierr = PetscMalloc1(fn,&gcid);CHKERRQ(ierr);
654f9a65ec8SPeter Brune   ierr = VecCreateMPI(PetscObjectComm((PetscObject)A),cn,PETSC_DECIDE,&cv);CHKERRQ(ierr);
655f9a65ec8SPeter Brune   ierr = VecGetOwnershipRange(cv,&cs,&ce);CHKERRQ(ierr);
656f9a65ec8SPeter Brune   cn = 0;
657f9a65ec8SPeter Brune   for (i=0;i<fn;i++) {
658f9a65ec8SPeter Brune     ierr = PetscCDEmptyAt(agg_lists,i,&iscoarse); CHKERRQ(ierr);
659f9a65ec8SPeter Brune     if (!iscoarse) {
660c634539dSPeter Brune       gcid[i] = cs+cn;
661f9a65ec8SPeter Brune       cn++;
662f9a65ec8SPeter Brune     } else {
663c634539dSPeter Brune       gcid[i] = -1;
664f9a65ec8SPeter Brune     }
665f9a65ec8SPeter Brune   }
666c634539dSPeter Brune   if (size > 1) {
667c634539dSPeter Brune     ierr = PetscMalloc1(nl,&lcid);CHKERRQ(ierr);
668c634539dSPeter Brune     ierr = PetscSFBcastBegin(sf,MPIU_INT,gcid,lcid);CHKERRQ(ierr);
669c634539dSPeter Brune     ierr = PetscSFBcastEnd(sf,MPIU_INT,gcid,lcid);CHKERRQ(ierr);
670c634539dSPeter Brune   } else {
671c634539dSPeter Brune     lcid = gcid;
672c634539dSPeter Brune   }
673f9a65ec8SPeter Brune   /* count to preallocate the prolongator */
674f9a65ec8SPeter Brune   ierr = ISGetIndices(lis,&gidx);CHKERRQ(ierr);
675f9a65ec8SPeter Brune   maxcols = 0;
676f9a65ec8SPeter Brune   /* count the number of unique contributing coarse cells for each fine */
677f9a65ec8SPeter Brune   for (i=0;i<nl;i++) {
678ed4e82eaSPeter Brune     pcontrib[i] = 0.;
679c634539dSPeter Brune     ierr = MatGetRow(lA,i,&ncols,&icol,NULL);CHKERRQ(ierr);
680f9a65ec8SPeter Brune     if (gidx[i] >= fs && gidx[i] < fe) {
681f9a65ec8SPeter Brune       li = gidx[i] - fs;
682f9a65ec8SPeter Brune       lsparse[li] = 0;
683f9a65ec8SPeter Brune       gsparse[li] = 0;
684c634539dSPeter Brune       cid = lcid[i];
685f9a65ec8SPeter Brune       if (cid >= 0) {
686f9a65ec8SPeter Brune         lsparse[li] = 1;
687f9a65ec8SPeter Brune       } else {
688f9a65ec8SPeter Brune         for (j=0;j<ncols;j++) {
689c634539dSPeter Brune           if (lcid[icol[j]] >= 0) {
690f9a65ec8SPeter Brune             pcontrib[icol[j]] = 1.;
691f9a65ec8SPeter Brune           } else {
692f9a65ec8SPeter Brune             ci = icol[j];
693c634539dSPeter Brune             ierr = MatRestoreRow(lA,i,&ncols,&icol,NULL);CHKERRQ(ierr);
694c634539dSPeter Brune             ierr = MatGetRow(lA,ci,&ncols,&icol,NULL);CHKERRQ(ierr);
695f9a65ec8SPeter Brune             for (k=0;k<ncols;k++) {
696c634539dSPeter Brune               if (lcid[icol[k]] >= 0) {
697f9a65ec8SPeter Brune                 pcontrib[icol[k]] = 1.;
698f9a65ec8SPeter Brune               }
699f9a65ec8SPeter Brune             }
700c634539dSPeter Brune             ierr = MatRestoreRow(lA,ci,&ncols,&icol,NULL);CHKERRQ(ierr);
701c634539dSPeter Brune             ierr = MatGetRow(lA,i,&ncols,&icol,NULL);CHKERRQ(ierr);
702f9a65ec8SPeter Brune           }
703f9a65ec8SPeter Brune         }
704f9a65ec8SPeter Brune         for (j=0;j<ncols;j++) {
705c634539dSPeter Brune           if (lcid[icol[j]] >= 0 && pcontrib[icol[j]] != 0.) {
706c634539dSPeter Brune             lni = lcid[icol[j]];
707f9a65ec8SPeter Brune             if (lni >= cs && lni < ce) {
708f9a65ec8SPeter Brune               lsparse[li]++;
709f9a65ec8SPeter Brune             } else {
710f9a65ec8SPeter Brune               gsparse[li]++;
711f9a65ec8SPeter Brune             }
712f9a65ec8SPeter Brune             pcontrib[icol[j]] = 0.;
713f9a65ec8SPeter Brune           } else {
714f9a65ec8SPeter Brune             ci = icol[j];
715c634539dSPeter Brune             ierr = MatRestoreRow(lA,i,&ncols,&icol,NULL);CHKERRQ(ierr);
716c634539dSPeter Brune             ierr = MatGetRow(lA,ci,&ncols,&icol,NULL);CHKERRQ(ierr);
717f9a65ec8SPeter Brune             for (k=0;k<ncols;k++) {
718c634539dSPeter Brune               if (lcid[icol[k]] >= 0 && pcontrib[icol[k]] != 0.) {
719c634539dSPeter Brune                 lni = lcid[icol[k]];
720f9a65ec8SPeter Brune                 if (lni >= cs && lni < ce) {
721f9a65ec8SPeter Brune                   lsparse[li]++;
722f9a65ec8SPeter Brune                 } else {
723f9a65ec8SPeter Brune                   gsparse[li]++;
724f9a65ec8SPeter Brune                 }
725f9a65ec8SPeter Brune                 pcontrib[icol[k]] = 0.;
726f9a65ec8SPeter Brune               }
727f9a65ec8SPeter Brune             }
728c634539dSPeter Brune             ierr = MatRestoreRow(lA,ci,&ncols,&icol,NULL);CHKERRQ(ierr);
729c634539dSPeter Brune             ierr = MatGetRow(lA,i,&ncols,&icol,NULL);CHKERRQ(ierr);
730f9a65ec8SPeter Brune           }
731f9a65ec8SPeter Brune         }
732ed4e82eaSPeter Brune       }
733f9a65ec8SPeter Brune       if (lsparse[li] + gsparse[li] > maxcols) maxcols = lsparse[li]+gsparse[li];
734ed4e82eaSPeter Brune     }
735c634539dSPeter Brune     ierr = MatRestoreRow(lA,i,&ncols,&icol,&vcol);CHKERRQ(ierr);
736f9a65ec8SPeter Brune   }
737e632b94dSBarry Smith   ierr = PetscMalloc2(maxcols,&picol,maxcols,&pvcol);CHKERRQ(ierr);
738f9a65ec8SPeter Brune   ierr = MatCreate(PetscObjectComm((PetscObject)A),P);CHKERRQ(ierr);
739f9a65ec8SPeter Brune   ierr = MatGetType(A,&mtype);CHKERRQ(ierr);
740f9a65ec8SPeter Brune   ierr = MatSetType(*P,mtype);CHKERRQ(ierr);
741f9a65ec8SPeter Brune   ierr = MatSetSizes(*P,fn,cn,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
742f9a65ec8SPeter Brune   ierr = MatMPIAIJSetPreallocation(*P,0,lsparse,0,gsparse);CHKERRQ(ierr);
743f9a65ec8SPeter Brune   ierr = MatSeqAIJSetPreallocation(*P,0,lsparse);CHKERRQ(ierr);
744f9a65ec8SPeter Brune   for (i=0;i<nl;i++) {
745ed4e82eaSPeter Brune     diag = 0.;
746f9a65ec8SPeter Brune     if (gidx[i] >= fs && gidx[i] < fe) {
747f9a65ec8SPeter Brune       li = gidx[i] - fs;
748f9a65ec8SPeter Brune       pncols=0;
749c634539dSPeter Brune       cid = lcid[i];
750f9a65ec8SPeter Brune       if (cid >= 0) {
751f9a65ec8SPeter Brune         pncols = 1;
752f9a65ec8SPeter Brune         picol[0] = cid;
753f9a65ec8SPeter Brune         pvcol[0] = 1.;
754f9a65ec8SPeter Brune       } else {
755c634539dSPeter Brune         ierr = MatGetRow(lA,i,&ncols,&icol,&vcol);CHKERRQ(ierr);
756f9a65ec8SPeter Brune         for (j=0;j<ncols;j++) {
757ed4e82eaSPeter Brune           pentry = vcol[j];
758c634539dSPeter Brune           if (lcid[icol[j]] >= 0) {
759f9a65ec8SPeter Brune             /* coarse neighbor */
760ed4e82eaSPeter Brune             pcontrib[icol[j]] += pentry;
761ed4e82eaSPeter Brune           } else if (icol[j] != i) {
762f9a65ec8SPeter Brune             /* the neighbor is a strongly connected fine node */
763f9a65ec8SPeter Brune             ci = icol[j];
764f9a65ec8SPeter Brune             vi = vcol[j];
765c634539dSPeter Brune             ierr = MatRestoreRow(lA,i,&ncols,&icol,&vcol);CHKERRQ(ierr);
766c634539dSPeter Brune             ierr = MatGetRow(lA,ci,&ncols,&icol,&vcol);CHKERRQ(ierr);
767ed4e82eaSPeter Brune             jwttotal=0.;
768f9a65ec8SPeter Brune             jdiag = 0.;
769f9a65ec8SPeter Brune             for (k=0;k<ncols;k++) {
770ed4e82eaSPeter Brune               if (ci == icol[k]) {
7717779008dSPeter Brune                 jdiag = PetscRealPart(vcol[k]);
772f9a65ec8SPeter Brune               }
773f9a65ec8SPeter Brune             }
774f9a65ec8SPeter Brune             for (k=0;k<ncols;k++) {
775c634539dSPeter Brune               if (lcid[icol[k]] >= 0 && jdiag*PetscRealPart(vcol[k]) < 0.) {
776ed4e82eaSPeter Brune                 pjentry = vcol[k];
7777779008dSPeter Brune                 jwttotal += PetscRealPart(pjentry);
778f9a65ec8SPeter Brune               }
779f9a65ec8SPeter Brune             }
780ed4e82eaSPeter Brune             if (jwttotal != 0.) {
7817779008dSPeter Brune               jwttotal = PetscRealPart(vi)/jwttotal;
782ed4e82eaSPeter Brune               for (k=0;k<ncols;k++) {
783c634539dSPeter Brune                 if (lcid[icol[k]] >= 0 && jdiag*PetscRealPart(vcol[k]) < 0.) {
784586a8384SPeter Brune                   pjentry = vcol[k]*jwttotal;
785ed4e82eaSPeter Brune                   pcontrib[icol[k]] += pjentry;
786ed4e82eaSPeter Brune                 }
787ed4e82eaSPeter Brune               }
788ed4e82eaSPeter Brune             } else {
789ed4e82eaSPeter Brune               diag += PetscRealPart(vi);
790ed4e82eaSPeter Brune             }
791c634539dSPeter Brune             ierr = MatRestoreRow(lA,ci,&ncols,&icol,&vcol);CHKERRQ(ierr);
792c634539dSPeter Brune             ierr = MatGetRow(lA,i,&ncols,&icol,&vcol);CHKERRQ(ierr);
793ed4e82eaSPeter Brune           } else {
794ed4e82eaSPeter Brune             diag += PetscRealPart(vcol[j]);
795f9a65ec8SPeter Brune           }
796f9a65ec8SPeter Brune         }
797586a8384SPeter Brune         if (diag != 0.) {
798586a8384SPeter Brune           diag = 1./diag;
799f9a65ec8SPeter Brune           for (j=0;j<ncols;j++) {
800c634539dSPeter Brune             if (lcid[icol[j]] >= 0 && pcontrib[icol[j]] != 0.) {
801f9a65ec8SPeter Brune               /* the neighbor is a coarse node */
802ed4e82eaSPeter Brune               if (PetscAbsScalar(pcontrib[icol[j]]) > 0.0) {
803c634539dSPeter Brune                 lni = lcid[icol[j]];
804586a8384SPeter Brune                 pvcol[pncols] = -pcontrib[icol[j]]*diag;
805f9a65ec8SPeter Brune                 picol[pncols] = lni;
806f9a65ec8SPeter Brune                 pncols++;
807ed4e82eaSPeter Brune               }
808ed4e82eaSPeter Brune               pcontrib[icol[j]] = 0.;
809f9a65ec8SPeter Brune             } else {
810f9a65ec8SPeter Brune               /* the neighbor is a strongly connected fine node */
811f9a65ec8SPeter Brune               ci = icol[j];
812c634539dSPeter Brune               ierr = MatRestoreRow(lA,i,&ncols,&icol,&vcol);CHKERRQ(ierr);
813c634539dSPeter Brune               ierr = MatGetRow(lA,ci,&ncols,&icol,&vcol);CHKERRQ(ierr);
814f9a65ec8SPeter Brune               for (k=0;k<ncols;k++) {
815c634539dSPeter Brune                 if (lcid[icol[k]] >= 0 && pcontrib[icol[k]] != 0.) {
816ed4e82eaSPeter Brune                   if (PetscAbsScalar(pcontrib[icol[k]]) > 0.0) {
817c634539dSPeter Brune                     lni = lcid[icol[k]];
818586a8384SPeter Brune                     pvcol[pncols] = -pcontrib[icol[k]]*diag;
819f9a65ec8SPeter Brune                     picol[pncols] = lni;
820f9a65ec8SPeter Brune                     pncols++;
821f9a65ec8SPeter Brune                   }
822ed4e82eaSPeter Brune                   pcontrib[icol[k]] = 0.;
823ed4e82eaSPeter Brune                 }
824f9a65ec8SPeter Brune               }
825c634539dSPeter Brune               ierr = MatRestoreRow(lA,ci,&ncols,&icol,&vcol);CHKERRQ(ierr);
826c634539dSPeter Brune               ierr = MatGetRow(lA,i,&ncols,&icol,&vcol);CHKERRQ(ierr);
827f9a65ec8SPeter Brune             }
828ed4e82eaSPeter Brune             pcontrib[icol[j]] = 0.;
829f9a65ec8SPeter Brune           }
830c634539dSPeter Brune           ierr = MatRestoreRow(lA,i,&ncols,&icol,&vcol);CHKERRQ(ierr);
831f9a65ec8SPeter Brune         }
832586a8384SPeter Brune       }
833f9a65ec8SPeter Brune       ci = gidx[i];
834f9a65ec8SPeter Brune       li = gidx[i] - fs;
835f9a65ec8SPeter Brune       if (pncols > 0) {
836f9a65ec8SPeter Brune         ierr = MatSetValues(*P,1,&ci,pncols,picol,pvcol,INSERT_VALUES);CHKERRQ(ierr);
837f9a65ec8SPeter Brune       }
838f9a65ec8SPeter Brune     }
839f9a65ec8SPeter Brune   }
840f9a65ec8SPeter Brune   ierr = ISRestoreIndices(lis,&gidx);CHKERRQ(ierr);
841e632b94dSBarry Smith   ierr = PetscFree2(picol,pvcol);CHKERRQ(ierr);
842e632b94dSBarry Smith   ierr = PetscFree3(lsparse,gsparse,pcontrib);CHKERRQ(ierr);
843f9a65ec8SPeter Brune   ierr = ISDestroy(&lis);CHKERRQ(ierr);
844c634539dSPeter Brune   ierr = PetscFree(gcid);CHKERRQ(ierr);
845c634539dSPeter Brune   if (size > 1) {
846c634539dSPeter Brune     ierr = PetscFree(lcid);CHKERRQ(ierr);
847c634539dSPeter Brune     ierr = MatDestroyMatrices(1,&lAs);CHKERRQ(ierr);
848c634539dSPeter Brune     ierr = PetscSFDestroy(&sf);CHKERRQ(ierr);
849c634539dSPeter Brune   }
850f9a65ec8SPeter Brune   ierr = VecDestroy(&cv);CHKERRQ(ierr);
851f9a65ec8SPeter Brune   ierr = MatAssemblyBegin(*P, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
852f9a65ec8SPeter Brune   ierr = MatAssemblyEnd(*P, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8538eab0cc1SPeter Brune   PetscFunctionReturn(0);
8548eab0cc1SPeter Brune }
855f9a65ec8SPeter Brune 
8568eab0cc1SPeter Brune #undef __FUNCT__
857fd1112cbSBarry Smith #define __FUNCT__ "PCGAMGOptProlongator_Classical_Jacobi"
8582adfe9d3SBarry Smith PetscErrorCode PCGAMGOptProlongator_Classical_Jacobi(PC pc,Mat A,Mat *P)
859b4dc3ebdSPeter Brune {
860b4dc3ebdSPeter Brune 
861b4dc3ebdSPeter Brune   PetscErrorCode    ierr;
862b4dc3ebdSPeter Brune   PetscInt          f,s,n,cf,cs,i,idx;
863b4dc3ebdSPeter Brune   PetscInt          *coarserows;
864b4dc3ebdSPeter Brune   PetscInt          ncols;
865b4dc3ebdSPeter Brune   const PetscInt    *pcols;
866b4dc3ebdSPeter Brune   const PetscScalar *pvals;
867b4dc3ebdSPeter Brune   Mat               Pnew;
868b4dc3ebdSPeter Brune   Vec               diag;
869b4dc3ebdSPeter Brune   PC_MG             *mg          = (PC_MG*)pc->data;
870b4dc3ebdSPeter Brune   PC_GAMG           *pc_gamg     = (PC_GAMG*)mg->innerctx;
871b4dc3ebdSPeter Brune   PC_GAMG_Classical *cls         = (PC_GAMG_Classical*)pc_gamg->subctx;
872b4dc3ebdSPeter Brune 
873b4dc3ebdSPeter Brune   PetscFunctionBegin;
874b4dc3ebdSPeter Brune   if (cls->nsmooths == 0) {
875b4dc3ebdSPeter Brune     ierr = PCGAMGTruncateProlongator_Private(pc,P);CHKERRQ(ierr);
876b4dc3ebdSPeter Brune     PetscFunctionReturn(0);
877b4dc3ebdSPeter Brune   }
878b4dc3ebdSPeter Brune   ierr = MatGetOwnershipRange(*P,&s,&f);CHKERRQ(ierr);
879b4dc3ebdSPeter Brune   n = f-s;
880b4dc3ebdSPeter Brune   ierr = MatGetOwnershipRangeColumn(*P,&cs,&cf);CHKERRQ(ierr);
88189d949e2SBarry Smith   ierr = PetscMalloc1(n,&coarserows);CHKERRQ(ierr);
882b4dc3ebdSPeter Brune   /* identify the rows corresponding to coarse unknowns */
883b4dc3ebdSPeter Brune   idx = 0;
884b4dc3ebdSPeter Brune   for (i=s;i<f;i++) {
885b4dc3ebdSPeter Brune     ierr = MatGetRow(*P,i,&ncols,&pcols,&pvals);CHKERRQ(ierr);
886b4dc3ebdSPeter Brune     /* assume, for now, that it's a coarse unknown if it has a single unit entry */
887b4dc3ebdSPeter Brune     if (ncols == 1) {
888b4dc3ebdSPeter Brune       if (pvals[0] == 1.) {
889b4dc3ebdSPeter Brune         coarserows[idx] = i;
890b4dc3ebdSPeter Brune         idx++;
891b4dc3ebdSPeter Brune       }
892b4dc3ebdSPeter Brune     }
893b4dc3ebdSPeter Brune     ierr = MatRestoreRow(*P,i,&ncols,&pcols,&pvals);CHKERRQ(ierr);
894b4dc3ebdSPeter Brune   }
8952a7a6963SBarry Smith   ierr = MatCreateVecs(A,&diag,0);CHKERRQ(ierr);
896b4dc3ebdSPeter Brune   ierr = MatGetDiagonal(A,diag);CHKERRQ(ierr);
897b4dc3ebdSPeter Brune   ierr = VecReciprocal(diag);CHKERRQ(ierr);
898b4dc3ebdSPeter Brune   for (i=0;i<cls->nsmooths;i++) {
899b4dc3ebdSPeter Brune     ierr = MatMatMult(A,*P,MAT_INITIAL_MATRIX,PETSC_DEFAULT,&Pnew);CHKERRQ(ierr);
900b4dc3ebdSPeter Brune     ierr = MatZeroRows(Pnew,idx,coarserows,0.,NULL,NULL);CHKERRQ(ierr);
901b4dc3ebdSPeter Brune     ierr = MatDiagonalScale(Pnew,diag,0);CHKERRQ(ierr);
902b4dc3ebdSPeter Brune     ierr = MatAYPX(Pnew,-1.0,*P,DIFFERENT_NONZERO_PATTERN);CHKERRQ(ierr);
903b4dc3ebdSPeter Brune     ierr = MatDestroy(P);CHKERRQ(ierr);
904b4dc3ebdSPeter Brune     *P  = Pnew;
905b4dc3ebdSPeter Brune     Pnew = NULL;
906b4dc3ebdSPeter Brune   }
907b4dc3ebdSPeter Brune   ierr = VecDestroy(&diag);CHKERRQ(ierr);
908b4dc3ebdSPeter Brune   ierr = PetscFree(coarserows);CHKERRQ(ierr);
909b4dc3ebdSPeter Brune   ierr = PCGAMGTruncateProlongator_Private(pc,P);CHKERRQ(ierr);
910b4dc3ebdSPeter Brune   PetscFunctionReturn(0);
911b4dc3ebdSPeter Brune }
912b4dc3ebdSPeter Brune 
913b4dc3ebdSPeter Brune #undef __FUNCT__
9148eab0cc1SPeter Brune #define __FUNCT__ "PCGAMGProlongator_Classical"
9152adfe9d3SBarry Smith PetscErrorCode PCGAMGProlongator_Classical(PC pc, Mat A, Mat G, PetscCoarsenData *agg_lists,Mat *P)
9168eab0cc1SPeter Brune {
9178eab0cc1SPeter Brune   PetscErrorCode    ierr;
9188eab0cc1SPeter Brune   PetscErrorCode    (*f)(PC,Mat,Mat,PetscCoarsenData*,Mat*);
9198eab0cc1SPeter Brune   PC_MG             *mg          = (PC_MG*)pc->data;
9208eab0cc1SPeter Brune   PC_GAMG           *pc_gamg     = (PC_GAMG*)mg->innerctx;
9218eab0cc1SPeter Brune   PC_GAMG_Classical *cls         = (PC_GAMG_Classical*)pc_gamg->subctx;
9228eab0cc1SPeter Brune 
9238eab0cc1SPeter Brune   PetscFunctionBegin;
9248eab0cc1SPeter Brune   ierr = PetscFunctionListFind(PCGAMGClassicalProlongatorList,cls->prolongtype,&f);CHKERRQ(ierr);
9258eab0cc1SPeter Brune   if (!f)SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_ARG_WRONGSTATE,"Cannot find PCGAMG Classical prolongator type");
9268eab0cc1SPeter Brune   ierr = (*f)(pc,A,G,agg_lists,P);CHKERRQ(ierr);
927f9a65ec8SPeter Brune   PetscFunctionReturn(0);
928f9a65ec8SPeter Brune }
929f9a65ec8SPeter Brune 
930f9a65ec8SPeter Brune #undef __FUNCT__
9318e6d0c30SPeter Brune #define __FUNCT__ "PCGAMGDestroy_Classical"
9328e6d0c30SPeter Brune PetscErrorCode PCGAMGDestroy_Classical(PC pc)
9338e6d0c30SPeter Brune {
9348e6d0c30SPeter Brune   PetscErrorCode ierr;
9358e6d0c30SPeter Brune   PC_MG          *mg          = (PC_MG*)pc->data;
9368e6d0c30SPeter Brune   PC_GAMG        *pc_gamg     = (PC_GAMG*)mg->innerctx;
9378e6d0c30SPeter Brune 
9388e6d0c30SPeter Brune   PetscFunctionBegin;
9398e6d0c30SPeter Brune   ierr = PetscFree(pc_gamg->subctx);CHKERRQ(ierr);
9408eab0cc1SPeter Brune   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCGAMGClassicalSetType_C",NULL);CHKERRQ(ierr);
941c60c7ad4SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCGAMGClassicalGetType_C",NULL);CHKERRQ(ierr);
9428e6d0c30SPeter Brune   PetscFunctionReturn(0);
9438e6d0c30SPeter Brune }
9448e6d0c30SPeter Brune 
9458e6d0c30SPeter Brune #undef __FUNCT__
9468e6d0c30SPeter Brune #define __FUNCT__ "PCGAMGSetFromOptions_Classical"
9478c34d3f5SBarry Smith PetscErrorCode PCGAMGSetFromOptions_Classical(PetscOptions *PetscOptionsObject,PC pc)
9488e6d0c30SPeter Brune {
949586a8384SPeter Brune   PC_MG             *mg          = (PC_MG*)pc->data;
950586a8384SPeter Brune   PC_GAMG           *pc_gamg     = (PC_GAMG*)mg->innerctx;
951586a8384SPeter Brune   PC_GAMG_Classical *cls         = (PC_GAMG_Classical*)pc_gamg->subctx;
9528eab0cc1SPeter Brune   char              tname[256];
953586a8384SPeter Brune   PetscErrorCode    ierr;
9548eab0cc1SPeter Brune   PetscBool         flg;
955586a8384SPeter Brune 
9568e6d0c30SPeter Brune   PetscFunctionBegin;
9571a1499c8SBarry Smith   ierr = PetscOptionsHead(PetscOptionsObject,"GAMG-Classical options");CHKERRQ(ierr);
958c60c7ad4SBarry Smith   ierr = PetscOptionsFList("-pc_gamg_classical_type","Type of Classical AMG prolongation","PCGAMGClassicalSetType",PCGAMGClassicalProlongatorList,cls->prolongtype, tname, sizeof(tname), &flg);CHKERRQ(ierr);
9598eab0cc1SPeter Brune   if (flg) {
9608eab0cc1SPeter Brune     ierr = PCGAMGClassicalSetType(pc,tname);CHKERRQ(ierr);
9618eab0cc1SPeter Brune   }
962b4dc3ebdSPeter Brune   ierr = PetscOptionsReal("-pc_gamg_classical_interp_threshold","Threshold for classical interpolator entries","",cls->interp_threshold,&cls->interp_threshold,NULL);CHKERRQ(ierr);
963b4dc3ebdSPeter Brune   ierr = PetscOptionsInt("-pc_gamg_classical_nsmooths","Threshold for classical interpolator entries","",cls->nsmooths,&cls->nsmooths,NULL);CHKERRQ(ierr);
964586a8384SPeter Brune   ierr = PetscOptionsTail();CHKERRQ(ierr);
9658e6d0c30SPeter Brune   PetscFunctionReturn(0);
9668e6d0c30SPeter Brune }
9678e6d0c30SPeter Brune 
9688e6d0c30SPeter Brune #undef __FUNCT__
9698e6d0c30SPeter Brune #define __FUNCT__ "PCGAMGSetData_Classical"
9708e6d0c30SPeter Brune PetscErrorCode PCGAMGSetData_Classical(PC pc, Mat A)
9718e6d0c30SPeter Brune {
9728e6d0c30SPeter Brune   PC_MG          *mg      = (PC_MG*)pc->data;
9738e6d0c30SPeter Brune   PC_GAMG        *pc_gamg = (PC_GAMG*)mg->innerctx;
9748e6d0c30SPeter Brune 
9758e6d0c30SPeter Brune   PetscFunctionBegin;
9768e6d0c30SPeter Brune   /* no data for classical AMG */
9778e6d0c30SPeter Brune   pc_gamg->data = NULL;
978d2050638SMark Adams   pc_gamg->data_cell_cols = 0;
979d2050638SMark Adams   pc_gamg->data_cell_rows = 0;
9808e6d0c30SPeter Brune   pc_gamg->data_sz        = 0;
9818e6d0c30SPeter Brune   PetscFunctionReturn(0);
9828e6d0c30SPeter Brune }
9838e6d0c30SPeter Brune 
9848eab0cc1SPeter Brune 
9858eab0cc1SPeter Brune #undef __FUNCT__
9868eab0cc1SPeter Brune #define __FUNCT__ "PCGAMGClassicalFinalizePackage"
9878eab0cc1SPeter Brune PetscErrorCode PCGAMGClassicalFinalizePackage(void)
9888eab0cc1SPeter Brune {
9898eab0cc1SPeter Brune   PetscErrorCode ierr;
9908eab0cc1SPeter Brune 
9918eab0cc1SPeter Brune   PetscFunctionBegin;
9928eab0cc1SPeter Brune   PCGAMGClassicalPackageInitialized = PETSC_FALSE;
9938eab0cc1SPeter Brune   ierr = PetscFunctionListDestroy(&PCGAMGClassicalProlongatorList);CHKERRQ(ierr);
9948eab0cc1SPeter Brune   PetscFunctionReturn(0);
9958eab0cc1SPeter Brune }
9968eab0cc1SPeter Brune 
9978eab0cc1SPeter Brune #undef __FUNCT__
9988eab0cc1SPeter Brune #define __FUNCT__ "PCGAMGClassicalInitializePackage"
9998eab0cc1SPeter Brune PetscErrorCode PCGAMGClassicalInitializePackage(void)
10008eab0cc1SPeter Brune {
10018eab0cc1SPeter Brune   PetscErrorCode ierr;
10028eab0cc1SPeter Brune 
10038eab0cc1SPeter Brune   PetscFunctionBegin;
10048eab0cc1SPeter Brune   if (PCGAMGClassicalPackageInitialized) PetscFunctionReturn(0);
10057779008dSPeter Brune   ierr = PetscFunctionListAdd(&PCGAMGClassicalProlongatorList,PCGAMGCLASSICALDIRECT,PCGAMGProlongator_Classical_Direct);CHKERRQ(ierr);
10067779008dSPeter Brune   ierr = PetscFunctionListAdd(&PCGAMGClassicalProlongatorList,PCGAMGCLASSICALSTANDARD,PCGAMGProlongator_Classical_Standard);CHKERRQ(ierr);
10078eab0cc1SPeter Brune   ierr = PetscRegisterFinalize(PCGAMGClassicalFinalizePackage);CHKERRQ(ierr);
10088eab0cc1SPeter Brune   PetscFunctionReturn(0);
10098eab0cc1SPeter Brune }
10108eab0cc1SPeter Brune 
10118e6d0c30SPeter Brune /* -------------------------------------------------------------------------- */
10128e6d0c30SPeter Brune /*
10138e6d0c30SPeter Brune    PCCreateGAMG_Classical
10148e6d0c30SPeter Brune 
10158e6d0c30SPeter Brune */
10168e6d0c30SPeter Brune #undef __FUNCT__
10178e6d0c30SPeter Brune #define __FUNCT__ "PCCreateGAMG_Classical"
10188e6d0c30SPeter Brune PetscErrorCode  PCCreateGAMG_Classical(PC pc)
10198e6d0c30SPeter Brune {
10208e6d0c30SPeter Brune   PetscErrorCode ierr;
10218e6d0c30SPeter Brune   PC_MG             *mg      = (PC_MG*)pc->data;
10228e6d0c30SPeter Brune   PC_GAMG           *pc_gamg = (PC_GAMG*)mg->innerctx;
10238e6d0c30SPeter Brune   PC_GAMG_Classical *pc_gamg_classical;
10248e6d0c30SPeter Brune 
10258e6d0c30SPeter Brune   PetscFunctionBegin;
10268eab0cc1SPeter Brune   ierr = PCGAMGClassicalInitializePackage();
10278e6d0c30SPeter Brune   if (pc_gamg->subctx) {
10288e6d0c30SPeter Brune     /* call base class */
10298e6d0c30SPeter Brune     ierr = PCDestroy_GAMG(pc);CHKERRQ(ierr);
10308e6d0c30SPeter Brune   }
10318e6d0c30SPeter Brune 
10328e6d0c30SPeter Brune   /* create sub context for SA */
1033b00a9115SJed Brown   ierr = PetscNewLog(pc,&pc_gamg_classical);CHKERRQ(ierr);
10348e6d0c30SPeter Brune   pc_gamg->subctx = pc_gamg_classical;
10358e6d0c30SPeter Brune   pc->ops->setfromoptions = PCGAMGSetFromOptions_Classical;
10368e6d0c30SPeter Brune   /* reset does not do anything; setup not virtual */
10378e6d0c30SPeter Brune 
10388e6d0c30SPeter Brune   /* set internal function pointers */
10398e6d0c30SPeter Brune   pc_gamg->ops->destroy        = PCGAMGDestroy_Classical;
10408e6d0c30SPeter Brune   pc_gamg->ops->graph          = PCGAMGGraph_Classical;
10418e6d0c30SPeter Brune   pc_gamg->ops->coarsen        = PCGAMGCoarsen_Classical;
10428eab0cc1SPeter Brune   pc_gamg->ops->prolongator    = PCGAMGProlongator_Classical;
1043fd1112cbSBarry Smith   pc_gamg->ops->optprolongator = PCGAMGOptProlongator_Classical_Jacobi;
1044586a8384SPeter Brune   pc_gamg->ops->setfromoptions = PCGAMGSetFromOptions_Classical;
10458e6d0c30SPeter Brune 
10468e6d0c30SPeter Brune   pc_gamg->ops->createdefaultdata = PCGAMGSetData_Classical;
1047586a8384SPeter Brune   pc_gamg_classical->interp_threshold = 0.2;
1048b4dc3ebdSPeter Brune   pc_gamg_classical->nsmooths         = 0;
10498eab0cc1SPeter Brune   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCGAMGClassicalSetType_C",PCGAMGClassicalSetType_GAMG);CHKERRQ(ierr);
1050c60c7ad4SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCGAMGClassicalGetType_C",PCGAMGClassicalGetType_GAMG);CHKERRQ(ierr);
10517779008dSPeter Brune   ierr = PCGAMGClassicalSetType(pc,PCGAMGCLASSICALSTANDARD);CHKERRQ(ierr);
10528e6d0c30SPeter Brune   PetscFunctionReturn(0);
10538e6d0c30SPeter Brune }
1054