xref: /petsc/src/ksp/pc/impls/gamg/classical.c (revision d9558ea91a0ca1fa4633d87e21172ffbe9a39015)
18e6d0c30SPeter Brune #include <../src/ksp/pc/impls/gamg/gamg.h>        /*I "petscpc.h" I*/
28e6d0c30SPeter Brune #include <petsc-private/kspimpl.h>
387b9b13cSPeter Brune #include <petscsf.h>
48e6d0c30SPeter Brune 
58eab0cc1SPeter Brune PetscFunctionList PCGAMGClassicalProlongatorList    = NULL;
68eab0cc1SPeter Brune PetscBool         PCGAMGClassicalPackageInitialized = PETSC_FALSE;
78eab0cc1SPeter Brune 
88e6d0c30SPeter Brune typedef struct {
9586a8384SPeter Brune   PetscReal interp_threshold; /* interpolation threshold */
108eab0cc1SPeter Brune   char      prolongtype[256];
11b4dc3ebdSPeter Brune   PetscInt  nsmooths;         /* number of jacobi smoothings on the prolongator */
128e6d0c30SPeter Brune } PC_GAMG_Classical;
138e6d0c30SPeter Brune 
148eab0cc1SPeter Brune #undef __FUNCT__
158eab0cc1SPeter Brune #define __FUNCT__ "PCGAMGClassicalSetType"
167779008dSPeter Brune /*@C
178eab0cc1SPeter Brune    PCGAMGClassicalSetType - Sets the type of classical interpolation to use
188eab0cc1SPeter Brune 
198eab0cc1SPeter Brune    Collective on PC
208eab0cc1SPeter Brune 
218eab0cc1SPeter Brune    Input Parameters:
228eab0cc1SPeter Brune .  pc - the preconditioner context
238eab0cc1SPeter Brune 
248eab0cc1SPeter Brune    Options Database Key:
258eab0cc1SPeter Brune .  -pc_gamg_classical_type
268eab0cc1SPeter Brune 
278eab0cc1SPeter Brune    Level: intermediate
288eab0cc1SPeter Brune 
298eab0cc1SPeter Brune .seealso: ()
308eab0cc1SPeter Brune @*/
318eab0cc1SPeter Brune PetscErrorCode PCGAMGClassicalSetType(PC pc, PCGAMGClassicalType type)
328eab0cc1SPeter Brune {
338eab0cc1SPeter Brune   PetscErrorCode ierr;
348eab0cc1SPeter Brune 
358eab0cc1SPeter Brune   PetscFunctionBegin;
368eab0cc1SPeter Brune   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
378eab0cc1SPeter Brune   ierr = PetscTryMethod(pc,"PCGAMGClassicalSetType_C",(PC,PCGAMGType),(pc,type));CHKERRQ(ierr);
388eab0cc1SPeter Brune   PetscFunctionReturn(0);
398eab0cc1SPeter Brune }
408eab0cc1SPeter Brune 
418eab0cc1SPeter Brune #undef __FUNCT__
42c60c7ad4SBarry Smith #define __FUNCT__ "PCGAMGClassicalGetType"
43c60c7ad4SBarry Smith /*@C
44c60c7ad4SBarry Smith    PCGAMGClassicalGetType - Gets the type of classical interpolation to use
45c60c7ad4SBarry Smith 
46c60c7ad4SBarry Smith    Collective on PC
47c60c7ad4SBarry Smith 
48c60c7ad4SBarry Smith    Input Parameter:
49c60c7ad4SBarry Smith .  pc - the preconditioner context
50c60c7ad4SBarry Smith 
51c60c7ad4SBarry Smith    Output Parameter:
52c60c7ad4SBarry Smith .  type - the type used
53c60c7ad4SBarry Smith 
54c60c7ad4SBarry Smith    Level: intermediate
55c60c7ad4SBarry Smith 
56c60c7ad4SBarry Smith .seealso: ()
57c60c7ad4SBarry Smith @*/
58c60c7ad4SBarry Smith PetscErrorCode PCGAMGClassicalGetType(PC pc, PCGAMGClassicalType *type)
59c60c7ad4SBarry Smith {
60c60c7ad4SBarry Smith   PetscErrorCode ierr;
61c60c7ad4SBarry Smith 
62c60c7ad4SBarry Smith   PetscFunctionBegin;
63c60c7ad4SBarry Smith   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
64c60c7ad4SBarry Smith   ierr = PetscUseMethod(pc,"PCGAMGClassicalGetType_C",(PC,PCGAMGType*),(pc,type));CHKERRQ(ierr);
65c60c7ad4SBarry Smith   PetscFunctionReturn(0);
66c60c7ad4SBarry Smith }
67c60c7ad4SBarry Smith 
68c60c7ad4SBarry Smith #undef __FUNCT__
698eab0cc1SPeter Brune #define __FUNCT__ "PCGAMGClassicalSetType_GAMG"
708eab0cc1SPeter Brune static PetscErrorCode PCGAMGClassicalSetType_GAMG(PC pc, PCGAMGClassicalType type)
718eab0cc1SPeter Brune {
728eab0cc1SPeter Brune   PetscErrorCode    ierr;
738eab0cc1SPeter Brune   PC_MG             *mg          = (PC_MG*)pc->data;
748eab0cc1SPeter Brune   PC_GAMG           *pc_gamg     = (PC_GAMG*)mg->innerctx;
758eab0cc1SPeter Brune   PC_GAMG_Classical *cls         = (PC_GAMG_Classical*)pc_gamg->subctx;
768eab0cc1SPeter Brune 
778eab0cc1SPeter Brune   PetscFunctionBegin;
788eab0cc1SPeter Brune   ierr = PetscStrcpy(cls->prolongtype,type);CHKERRQ(ierr);
798eab0cc1SPeter Brune   PetscFunctionReturn(0);
808eab0cc1SPeter Brune }
818e6d0c30SPeter Brune 
828e6d0c30SPeter Brune #undef __FUNCT__
83c60c7ad4SBarry Smith #define __FUNCT__ "PCGAMGClassicalGetType_GAMG"
84c60c7ad4SBarry Smith static PetscErrorCode PCGAMGClassicalGetType_GAMG(PC pc, PCGAMGClassicalType *type)
85c60c7ad4SBarry Smith {
86c60c7ad4SBarry Smith   PC_MG             *mg          = (PC_MG*)pc->data;
87c60c7ad4SBarry Smith   PC_GAMG           *pc_gamg     = (PC_GAMG*)mg->innerctx;
88c60c7ad4SBarry Smith   PC_GAMG_Classical *cls         = (PC_GAMG_Classical*)pc_gamg->subctx;
89c60c7ad4SBarry Smith 
90c60c7ad4SBarry Smith   PetscFunctionBegin;
91c60c7ad4SBarry Smith   *type = cls->prolongtype;
92c60c7ad4SBarry Smith   PetscFunctionReturn(0);
93c60c7ad4SBarry Smith }
94c60c7ad4SBarry Smith 
95c60c7ad4SBarry Smith #undef __FUNCT__
968e6d0c30SPeter Brune #define __FUNCT__ "PCGAMGGraph_Classical"
972adfe9d3SBarry Smith PetscErrorCode PCGAMGGraph_Classical(PC pc,Mat A,Mat *G)
988e6d0c30SPeter Brune {
99550383edSPeter Brune   PetscInt          s,f,n,idx,lidx,gidx;
100e5a0faa4SPeter Brune   PetscInt          r,c,ncols;
1018e6d0c30SPeter Brune   const PetscInt    *rcol;
1028e6d0c30SPeter Brune   const PetscScalar *rval;
103e5a0faa4SPeter Brune   PetscInt          *gcol;
1048e6d0c30SPeter Brune   PetscScalar       *gval;
105e5a0faa4SPeter Brune   PetscReal         rmax;
106550383edSPeter Brune   PetscInt          cmax = 0;
1078e6d0c30SPeter Brune   PC_MG             *mg;
1088e6d0c30SPeter Brune   PC_GAMG           *gamg;
1098e6d0c30SPeter Brune   PetscErrorCode    ierr;
1108e6d0c30SPeter Brune   PetscInt          *gsparse,*lsparse;
111e5a0faa4SPeter Brune   PetscScalar       *Amax;
1128e6d0c30SPeter Brune   MatType           mtype;
1138e6d0c30SPeter Brune 
1148e6d0c30SPeter Brune   PetscFunctionBegin;
1158e6d0c30SPeter Brune   mg   = (PC_MG *)pc->data;
1168e6d0c30SPeter Brune   gamg = (PC_GAMG *)mg->innerctx;
1178e6d0c30SPeter Brune 
1188e6d0c30SPeter Brune   ierr = MatGetOwnershipRange(A,&s,&f);CHKERRQ(ierr);
119550383edSPeter Brune   n=f-s;
12089d949e2SBarry Smith   ierr = PetscMalloc1(n,&lsparse);CHKERRQ(ierr);
12189d949e2SBarry Smith   ierr = PetscMalloc1(n,&gsparse);CHKERRQ(ierr);
12289d949e2SBarry Smith   ierr = PetscMalloc1(n,&Amax);CHKERRQ(ierr);
1238e6d0c30SPeter Brune 
124550383edSPeter Brune   for (r = 0;r < n;r++) {
1258e6d0c30SPeter Brune     lsparse[r] = 0;
126550383edSPeter Brune     gsparse[r] = 0;
1278e6d0c30SPeter Brune   }
1288e6d0c30SPeter Brune 
129550383edSPeter Brune   for (r = s;r < f;r++) {
130e5a0faa4SPeter Brune     /* determine the maximum off-diagonal in each row */
131e5a0faa4SPeter Brune     rmax = 0.;
132550383edSPeter Brune     ierr = MatGetRow(A,r,&ncols,&rcol,&rval);CHKERRQ(ierr);
133e5a0faa4SPeter Brune     for (c = 0; c < ncols; c++) {
1341ce39c63SPeter Brune       if (PetscRealPart(-rval[c]) > rmax && rcol[c] != r) {
1351ce39c63SPeter Brune         rmax = PetscRealPart(-rval[c]);
136e5a0faa4SPeter Brune       }
137e5a0faa4SPeter Brune     }
138550383edSPeter Brune     Amax[r-s] = rmax;
139550383edSPeter Brune     if (ncols > cmax) cmax = ncols;
140550383edSPeter Brune     lidx = 0;
141550383edSPeter Brune     gidx = 0;
142e5a0faa4SPeter Brune     /* create the local and global sparsity patterns */
1438e6d0c30SPeter Brune     for (c = 0; c < ncols; c++) {
144d1f1af5eSPeter Brune       if (PetscRealPart(-rval[c]) > gamg->threshold*PetscRealPart(Amax[r-s]) || rcol[c] == r) {
145550383edSPeter Brune         if (rcol[c] < f && rcol[c] >= s) {
146550383edSPeter Brune           lidx++;
147550383edSPeter Brune         } else {
148550383edSPeter Brune           gidx++;
1498e6d0c30SPeter Brune         }
1508e6d0c30SPeter Brune       }
1518e6d0c30SPeter Brune     }
152550383edSPeter Brune     ierr = MatRestoreRow(A,r,&ncols,&rcol,&rval);CHKERRQ(ierr);
153550383edSPeter Brune     lsparse[r-s] = lidx;
154550383edSPeter Brune     gsparse[r-s] = gidx;
1558e6d0c30SPeter Brune   }
15689d949e2SBarry Smith   ierr = PetscMalloc1(cmax,&gval);CHKERRQ(ierr);
15789d949e2SBarry Smith   ierr = PetscMalloc1(cmax,&gcol);CHKERRQ(ierr);
158e5a0faa4SPeter Brune 
1598e6d0c30SPeter Brune   ierr = MatCreate(PetscObjectComm((PetscObject)A),G); CHKERRQ(ierr);
1608e6d0c30SPeter Brune   ierr = MatGetType(A,&mtype);CHKERRQ(ierr);
1618e6d0c30SPeter Brune   ierr = MatSetType(*G,mtype);CHKERRQ(ierr);
162550383edSPeter Brune   ierr = MatSetSizes(*G,n,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
1638e6d0c30SPeter Brune   ierr = MatMPIAIJSetPreallocation(*G,0,lsparse,0,gsparse);CHKERRQ(ierr);
1648e6d0c30SPeter Brune   ierr = MatSeqAIJSetPreallocation(*G,0,lsparse);CHKERRQ(ierr);
1658e6d0c30SPeter Brune   for (r = s;r < f;r++) {
1668e6d0c30SPeter Brune     ierr = MatGetRow(A,r,&ncols,&rcol,&rval);CHKERRQ(ierr);
1678e6d0c30SPeter Brune     idx = 0;
1688e6d0c30SPeter Brune     for (c = 0; c < ncols; c++) {
1698e6d0c30SPeter Brune       /* classical strength of connection */
170d1f1af5eSPeter Brune       if (PetscRealPart(-rval[c]) > gamg->threshold*PetscRealPart(Amax[r-s]) || rcol[c] == r) {
1718e6d0c30SPeter Brune         gcol[idx] = rcol[c];
1728e6d0c30SPeter Brune         gval[idx] = rval[c];
1738e6d0c30SPeter Brune         idx++;
1748e6d0c30SPeter Brune       }
1758e6d0c30SPeter Brune     }
1768e6d0c30SPeter Brune     ierr = MatSetValues(*G,1,&r,idx,gcol,gval,INSERT_VALUES);CHKERRQ(ierr);
1778e6d0c30SPeter Brune     ierr = MatRestoreRow(A,r,&ncols,&rcol,&rval);CHKERRQ(ierr);
1788e6d0c30SPeter Brune   }
1798e6d0c30SPeter Brune   ierr = MatAssemblyBegin(*G, MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
1808e6d0c30SPeter Brune   ierr = MatAssemblyEnd(*G, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1818e6d0c30SPeter Brune 
1828e6d0c30SPeter Brune   ierr = PetscFree(gval);CHKERRQ(ierr);
1838e6d0c30SPeter Brune   ierr = PetscFree(gcol);CHKERRQ(ierr);
1848e6d0c30SPeter Brune   ierr = PetscFree(lsparse);CHKERRQ(ierr);
1858e6d0c30SPeter Brune   ierr = PetscFree(gsparse);CHKERRQ(ierr);
186e5a0faa4SPeter Brune   ierr = PetscFree(Amax);CHKERRQ(ierr);
1878e6d0c30SPeter Brune   PetscFunctionReturn(0);
1888e6d0c30SPeter Brune }
1898e6d0c30SPeter Brune 
1908e6d0c30SPeter Brune 
1918e6d0c30SPeter Brune #undef __FUNCT__
1928e6d0c30SPeter Brune #define __FUNCT__ "PCGAMGCoarsen_Classical"
1938e6d0c30SPeter Brune PetscErrorCode PCGAMGCoarsen_Classical(PC pc,Mat *G,PetscCoarsenData **agg_lists)
1948e6d0c30SPeter Brune {
1958e6d0c30SPeter Brune   PetscErrorCode   ierr;
1968e6d0c30SPeter Brune   MatCoarsen       crs;
1978e6d0c30SPeter Brune   MPI_Comm         fcomm = ((PetscObject)pc)->comm;
1988e6d0c30SPeter Brune 
1998e6d0c30SPeter Brune   PetscFunctionBegin;
2008e6d0c30SPeter Brune 
2018e6d0c30SPeter Brune 
2028e6d0c30SPeter Brune   /* construct the graph if necessary */
2038e6d0c30SPeter Brune   if (!G) {
2048e6d0c30SPeter Brune     SETERRQ(fcomm,PETSC_ERR_ARG_WRONGSTATE,"Must set Graph in PC in PCGAMG before coarsening");
2058e6d0c30SPeter Brune   }
2068e6d0c30SPeter Brune 
2078e6d0c30SPeter Brune   ierr = MatCoarsenCreate(fcomm,&crs);CHKERRQ(ierr);
2088e6d0c30SPeter Brune   ierr = MatCoarsenSetFromOptions(crs);CHKERRQ(ierr);
2098e6d0c30SPeter Brune   ierr = MatCoarsenSetAdjacency(crs,*G);CHKERRQ(ierr);
2108e6d0c30SPeter Brune   ierr = MatCoarsenSetStrictAggs(crs,PETSC_TRUE);CHKERRQ(ierr);
2118e6d0c30SPeter Brune   ierr = MatCoarsenApply(crs);CHKERRQ(ierr);
2128e6d0c30SPeter Brune   ierr = MatCoarsenGetData(crs,agg_lists);CHKERRQ(ierr);
2138e6d0c30SPeter Brune   ierr = MatCoarsenDestroy(&crs);CHKERRQ(ierr);
2148e6d0c30SPeter Brune 
2158e6d0c30SPeter Brune   PetscFunctionReturn(0);
2168e6d0c30SPeter Brune }
2178e6d0c30SPeter Brune 
2188e6d0c30SPeter Brune #undef __FUNCT__
2198eab0cc1SPeter Brune #define __FUNCT__ "PCGAMGProlongator_Classical_Direct"
2202adfe9d3SBarry Smith PetscErrorCode PCGAMGProlongator_Classical_Direct(PC pc, Mat A, Mat G, PetscCoarsenData *agg_lists,Mat *P)
2218e6d0c30SPeter Brune {
2228e6d0c30SPeter Brune   PetscErrorCode    ierr;
2231ce39c63SPeter Brune   PC_MG             *mg          = (PC_MG*)pc->data;
2241ce39c63SPeter Brune   PC_GAMG           *gamg        = (PC_GAMG*)mg->innerctx;
22563b0c588SPeter Brune   PetscBool         iscoarse,isMPIAIJ,isSEQAIJ;
22663b0c588SPeter Brune   PetscInt          fn,cn,fs,fe,cs,ce,i,j,ncols,col,row_f,row_c,cmax=0,idx,noff;
22763b0c588SPeter Brune   PetscInt          *lcid,*gcid,*lsparse,*gsparse,*colmap,*pcols;
22863b0c588SPeter Brune   const PetscInt    *rcol;
22963b0c588SPeter Brune   PetscReal         *Amax_pos,*Amax_neg;
23063b0c588SPeter Brune   PetscScalar       g_pos,g_neg,a_pos,a_neg,diag,invdiag,alpha,beta,pij;
23163b0c588SPeter Brune   PetscScalar       *pvals;
23263b0c588SPeter Brune   const PetscScalar *rval;
23363b0c588SPeter Brune   Mat               lA,gA=NULL;
23463b0c588SPeter Brune   MatType           mtype;
23563b0c588SPeter Brune   Vec               C,lvec;
23687b9b13cSPeter Brune   PetscLayout       clayout;
23787b9b13cSPeter Brune   PetscSF           sf;
23887b9b13cSPeter Brune   Mat_MPIAIJ        *mpiaij;
2398e6d0c30SPeter Brune 
2408e6d0c30SPeter Brune   PetscFunctionBegin;
2418e6d0c30SPeter Brune   ierr = MatGetOwnershipRange(A,&fs,&fe);CHKERRQ(ierr);
24287b9b13cSPeter Brune   fn = fe-fs;
24387b9b13cSPeter Brune   ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIAIJ,&isMPIAIJ);CHKERRQ(ierr);
24487b9b13cSPeter Brune   ierr = PetscObjectTypeCompare((PetscObject)A,MATSEQAIJ,&isSEQAIJ);CHKERRQ(ierr);
24587b9b13cSPeter Brune   if (!isMPIAIJ && !isSEQAIJ) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Classical AMG requires MPIAIJ matrix");
24687b9b13cSPeter Brune   if (isMPIAIJ) {
24787b9b13cSPeter Brune     mpiaij = (Mat_MPIAIJ*)A->data;
24887b9b13cSPeter Brune     lA = mpiaij->A;
24987b9b13cSPeter Brune     gA = mpiaij->B;
25087b9b13cSPeter Brune     lvec = mpiaij->lvec;
25187b9b13cSPeter Brune     ierr = VecGetSize(lvec,&noff);CHKERRQ(ierr);
25287b9b13cSPeter Brune     colmap = mpiaij->garray;
25387b9b13cSPeter Brune     ierr = MatGetLayouts(A,NULL,&clayout);CHKERRQ(ierr);
25487b9b13cSPeter Brune     ierr = PetscSFCreate(PetscObjectComm((PetscObject)A),&sf);CHKERRQ(ierr);
25587b9b13cSPeter Brune     ierr = PetscSFSetGraphLayout(sf,clayout,noff,NULL,PETSC_COPY_VALUES,colmap);CHKERRQ(ierr);
25687b9b13cSPeter Brune     ierr = PetscMalloc1(noff,&gcid);CHKERRQ(ierr);
25787b9b13cSPeter Brune   } else {
25887b9b13cSPeter Brune     lA = A;
25987b9b13cSPeter Brune   }
26089d949e2SBarry Smith   ierr = PetscMalloc1(fn,&lsparse);CHKERRQ(ierr);
26189d949e2SBarry Smith   ierr = PetscMalloc1(fn,&gsparse);CHKERRQ(ierr);
26289d949e2SBarry Smith   ierr = PetscMalloc1(fn,&lcid);CHKERRQ(ierr);
26389d949e2SBarry Smith   ierr = PetscMalloc1(fn,&Amax_pos);CHKERRQ(ierr);
26489d949e2SBarry Smith   ierr = PetscMalloc1(fn,&Amax_neg);CHKERRQ(ierr);
2658e6d0c30SPeter Brune 
2668e6d0c30SPeter Brune   /* count the number of coarse unknowns */
2678e6d0c30SPeter Brune   cn = 0;
2688e6d0c30SPeter Brune   for (i=0;i<fn;i++) {
2698e6d0c30SPeter Brune     /* filter out singletons */
2708e6d0c30SPeter Brune     ierr = PetscCDEmptyAt(agg_lists,i,&iscoarse); CHKERRQ(ierr);
2718e6d0c30SPeter Brune     lcid[i] = -1;
2728e6d0c30SPeter Brune     if (!iscoarse) {
2738e6d0c30SPeter Brune       cn++;
2748e6d0c30SPeter Brune     }
2758e6d0c30SPeter Brune   }
2768e6d0c30SPeter Brune 
2778e6d0c30SPeter Brune    /* create the coarse vector */
27887b9b13cSPeter Brune   ierr = VecCreateMPI(PetscObjectComm((PetscObject)A),cn,PETSC_DECIDE,&C);CHKERRQ(ierr);
2798e6d0c30SPeter Brune   ierr = VecGetOwnershipRange(C,&cs,&ce);CHKERRQ(ierr);
2808e6d0c30SPeter Brune 
2818e6d0c30SPeter Brune   cn = 0;
2828e6d0c30SPeter Brune   for (i=0;i<fn;i++) {
2838e6d0c30SPeter Brune     ierr = PetscCDEmptyAt(agg_lists,i,&iscoarse); CHKERRQ(ierr);
2848e6d0c30SPeter Brune     if (!iscoarse) {
2858e6d0c30SPeter Brune       lcid[i] = cs+cn;
2868e6d0c30SPeter Brune       cn++;
2878e6d0c30SPeter Brune     } else {
2888e6d0c30SPeter Brune       lcid[i] = -1;
2898e6d0c30SPeter Brune     }
2908e6d0c30SPeter Brune   }
2918e6d0c30SPeter Brune 
29287b9b13cSPeter Brune   if (gA) {
29387b9b13cSPeter Brune     ierr = PetscSFBcastBegin(sf,MPIU_INT,lcid,gcid);CHKERRQ(ierr);
29487b9b13cSPeter Brune     ierr = PetscSFBcastEnd(sf,MPIU_INT,lcid,gcid);CHKERRQ(ierr);
29587b9b13cSPeter Brune   }
2968e6d0c30SPeter Brune 
2971ce39c63SPeter Brune   /* determine the biggest off-diagonal entries in each row */
2981ce39c63SPeter Brune   for (i=fs;i<fe;i++) {
2991ce39c63SPeter Brune     Amax_pos[i-fs] = 0.;
3001ce39c63SPeter Brune     Amax_neg[i-fs] = 0.;
3011ce39c63SPeter Brune     ierr = MatGetRow(A,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
3021ce39c63SPeter Brune     for(j=0;j<ncols;j++){
3031ce39c63SPeter Brune       if ((PetscRealPart(-rval[j]) > Amax_neg[i-fs]) && i != rcol[j]) Amax_neg[i-fs] = PetscAbsScalar(rval[j]);
3041ce39c63SPeter Brune       if ((PetscRealPart(rval[j])  > Amax_pos[i-fs]) && i != rcol[j]) Amax_pos[i-fs] = PetscAbsScalar(rval[j]);
3051ce39c63SPeter Brune     }
3061ce39c63SPeter Brune     if (ncols > cmax) cmax = ncols;
3071ce39c63SPeter Brune     ierr = MatRestoreRow(A,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
3081ce39c63SPeter Brune   }
30989d949e2SBarry Smith   ierr = PetscMalloc1(cmax,&pcols);CHKERRQ(ierr);
31089d949e2SBarry Smith   ierr = PetscMalloc1(cmax,&pvals);CHKERRQ(ierr);
3118e6d0c30SPeter Brune   ierr = VecDestroy(&C);CHKERRQ(ierr);
3128e6d0c30SPeter Brune 
3138e6d0c30SPeter Brune   /* count the on and off processor sparsity patterns for the prolongator */
3148e6d0c30SPeter Brune   for (i=0;i<fn;i++) {
3158e6d0c30SPeter Brune     /* on */
3168e6d0c30SPeter Brune     lsparse[i] = 0;
317e5a0faa4SPeter Brune     gsparse[i] = 0;
3188e6d0c30SPeter Brune     if (lcid[i] >= 0) {
3198e6d0c30SPeter Brune       lsparse[i] = 1;
3208e6d0c30SPeter Brune       gsparse[i] = 0;
3218e6d0c30SPeter Brune     } else {
3221ce39c63SPeter Brune       ierr = MatGetRow(lA,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
3238e6d0c30SPeter Brune       for (j = 0;j < ncols;j++) {
3241ce39c63SPeter Brune         col = rcol[j];
3251ce39c63SPeter Brune         if (lcid[col] >= 0 && (PetscRealPart(rval[j]) > gamg->threshold*Amax_pos[i] || PetscRealPart(-rval[j]) > gamg->threshold*Amax_neg[i])) {
3268e6d0c30SPeter Brune           lsparse[i] += 1;
3278e6d0c30SPeter Brune         }
3288e6d0c30SPeter Brune       }
3291ce39c63SPeter Brune       ierr = MatRestoreRow(lA,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
3308e6d0c30SPeter Brune       /* off */
3311ce39c63SPeter Brune       if (gA) {
3321ce39c63SPeter Brune         ierr = MatGetRow(gA,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
3338e6d0c30SPeter Brune         for (j = 0; j < ncols; j++) {
3341ce39c63SPeter Brune           col = rcol[j];
3351ce39c63SPeter Brune           if (gcid[col] >= 0 && (PetscRealPart(rval[j]) > gamg->threshold*Amax_pos[i] || PetscRealPart(-rval[j]) > gamg->threshold*Amax_neg[i])) {
3368e6d0c30SPeter Brune             gsparse[i] += 1;
3378e6d0c30SPeter Brune           }
3388e6d0c30SPeter Brune         }
3391ce39c63SPeter Brune         ierr = MatRestoreRow(gA,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
3408e6d0c30SPeter Brune       }
3418e6d0c30SPeter Brune     }
3421ce39c63SPeter Brune   }
3438e6d0c30SPeter Brune 
3448e6d0c30SPeter Brune   /* preallocate and create the prolongator */
34587b9b13cSPeter Brune   ierr = MatCreate(PetscObjectComm((PetscObject)A),P); CHKERRQ(ierr);
3468e6d0c30SPeter Brune   ierr = MatGetType(G,&mtype);CHKERRQ(ierr);
3478e6d0c30SPeter Brune   ierr = MatSetType(*P,mtype);CHKERRQ(ierr);
3488e6d0c30SPeter Brune   ierr = MatSetSizes(*P,fn,cn,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
3498e6d0c30SPeter Brune   ierr = MatMPIAIJSetPreallocation(*P,0,lsparse,0,gsparse);CHKERRQ(ierr);
3508e6d0c30SPeter Brune   ierr = MatSeqAIJSetPreallocation(*P,0,lsparse);CHKERRQ(ierr);
3518e6d0c30SPeter Brune 
3528e6d0c30SPeter Brune   /* loop over local fine nodes -- get the diagonal, the sum of positive and negative strong and weak weights, and set up the row */
3538e6d0c30SPeter Brune   for (i = 0;i < fn;i++) {
3548e6d0c30SPeter Brune     /* determine on or off */
3558e6d0c30SPeter Brune     row_f = i + fs;
3568e6d0c30SPeter Brune     row_c = lcid[i];
3578e6d0c30SPeter Brune     if (row_c >= 0) {
3588e6d0c30SPeter Brune       pij = 1.;
3598e6d0c30SPeter Brune       ierr = MatSetValues(*P,1,&row_f,1,&row_c,&pij,INSERT_VALUES);CHKERRQ(ierr);
3608e6d0c30SPeter Brune     } else {
3618e6d0c30SPeter Brune       g_pos = 0.;
3628e6d0c30SPeter Brune       g_neg = 0.;
3638e6d0c30SPeter Brune       a_pos = 0.;
3648e6d0c30SPeter Brune       a_neg = 0.;
3658e6d0c30SPeter Brune       diag = 0.;
3668e6d0c30SPeter Brune 
3671ce39c63SPeter Brune       /* local connections */
3688e6d0c30SPeter Brune       ierr = MatGetRow(lA,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
3691ce39c63SPeter Brune       for (j = 0; j < ncols; j++) {
3701ce39c63SPeter Brune         col = rcol[j];
3711ce39c63SPeter Brune         if (lcid[col] >= 0 && (PetscRealPart(rval[j]) > gamg->threshold*Amax_pos[i] || PetscRealPart(-rval[j]) > gamg->threshold*Amax_neg[i])) {
3721ce39c63SPeter Brune           if (PetscRealPart(rval[j]) > 0.) {
3731ce39c63SPeter Brune             g_pos += rval[j];
3748e6d0c30SPeter Brune           } else {
3751ce39c63SPeter Brune             g_neg += rval[j];
3768e6d0c30SPeter Brune           }
3771ce39c63SPeter Brune         }
3781ce39c63SPeter Brune         if (col != i) {
3791ce39c63SPeter Brune           if (PetscRealPart(rval[j]) > 0.) {
3801ce39c63SPeter Brune             a_pos += rval[j];
3811ce39c63SPeter Brune           } else {
3821ce39c63SPeter Brune             a_neg += rval[j];
3831ce39c63SPeter Brune           }
3841ce39c63SPeter Brune         } else {
3851ce39c63SPeter Brune           diag = rval[j];
3861ce39c63SPeter Brune         }
3878e6d0c30SPeter Brune       }
3888e6d0c30SPeter Brune       ierr = MatRestoreRow(lA,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
3898e6d0c30SPeter Brune 
3901ce39c63SPeter Brune       /* ghosted connections */
3918e6d0c30SPeter Brune       if (gA) {
3928e6d0c30SPeter Brune         ierr = MatGetRow(gA,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
3931ce39c63SPeter Brune         for (j = 0; j < ncols; j++) {
3941ce39c63SPeter Brune           col = rcol[j];
3951ce39c63SPeter Brune           if (gcid[col] >= 0 && (PetscRealPart(rval[j]) > gamg->threshold*Amax_pos[i] || PetscRealPart(-rval[j]) > gamg->threshold*Amax_neg[i])) {
3961ce39c63SPeter Brune             if (PetscRealPart(rval[j]) > 0.) {
3971ce39c63SPeter Brune               g_pos += rval[j];
3988e6d0c30SPeter Brune             } else {
3991ce39c63SPeter Brune               g_neg += rval[j];
4008e6d0c30SPeter Brune             }
4011ce39c63SPeter Brune           }
4021ce39c63SPeter Brune           if (PetscRealPart(rval[j]) > 0.) {
4031ce39c63SPeter Brune             a_pos += rval[j];
4041ce39c63SPeter Brune           } else {
4051ce39c63SPeter Brune             a_neg += rval[j];
4061ce39c63SPeter Brune           }
4078e6d0c30SPeter Brune         }
4088e6d0c30SPeter Brune         ierr = MatRestoreRow(gA,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
4098e6d0c30SPeter Brune       }
4108e6d0c30SPeter Brune 
4118e6d0c30SPeter Brune       if (g_neg == 0.) {
4128e6d0c30SPeter Brune         alpha = 0.;
4138e6d0c30SPeter Brune       } else {
4148e6d0c30SPeter Brune         alpha = -a_neg/g_neg;
4158e6d0c30SPeter Brune       }
4168e6d0c30SPeter Brune 
4178e6d0c30SPeter Brune       if (g_pos == 0.) {
4188e6d0c30SPeter Brune         diag += a_pos;
4198e6d0c30SPeter Brune         beta = 0.;
4208e6d0c30SPeter Brune       } else {
4218e6d0c30SPeter Brune         beta = -a_pos/g_pos;
4228e6d0c30SPeter Brune       }
423e5a0faa4SPeter Brune       if (diag == 0.) {
424e5a0faa4SPeter Brune         invdiag = 0.;
425e5a0faa4SPeter Brune       } else invdiag = 1. / diag;
4268e6d0c30SPeter Brune       /* on */
4271ce39c63SPeter Brune       ierr = MatGetRow(lA,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
4288e6d0c30SPeter Brune       idx = 0;
4298e6d0c30SPeter Brune       for (j = 0;j < ncols;j++) {
4301ce39c63SPeter Brune         col = rcol[j];
4311ce39c63SPeter Brune         if (lcid[col] >= 0 && (PetscRealPart(rval[j]) > gamg->threshold*Amax_pos[i] || PetscRealPart(-rval[j]) > gamg->threshold*Amax_neg[i])) {
4328e6d0c30SPeter Brune           row_f = i + fs;
4338e6d0c30SPeter Brune           row_c = lcid[col];
4348e6d0c30SPeter Brune           /* set the values for on-processor ones */
4351ce39c63SPeter Brune           if (PetscRealPart(rval[j]) < 0.) {
4361ce39c63SPeter Brune             pij = rval[j]*alpha*invdiag;
4378e6d0c30SPeter Brune           } else {
4381ce39c63SPeter Brune             pij = rval[j]*beta*invdiag;
4398e6d0c30SPeter Brune           }
4408e6d0c30SPeter Brune           if (PetscAbsScalar(pij) != 0.) {
4418e6d0c30SPeter Brune             pvals[idx] = pij;
4428e6d0c30SPeter Brune             pcols[idx] = row_c;
4438e6d0c30SPeter Brune             idx++;
4448e6d0c30SPeter Brune           }
4458e6d0c30SPeter Brune         }
4468e6d0c30SPeter Brune       }
4471ce39c63SPeter Brune       ierr = MatRestoreRow(lA,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
4488e6d0c30SPeter Brune       /* off */
4491ce39c63SPeter Brune       if (gA) {
4501ce39c63SPeter Brune         ierr = MatGetRow(gA,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
4518e6d0c30SPeter Brune         for (j = 0; j < ncols; j++) {
4521ce39c63SPeter Brune           col = rcol[j];
4531ce39c63SPeter Brune           if (gcid[col] >= 0 && (PetscRealPart(rval[j]) > gamg->threshold*Amax_pos[i] || PetscRealPart(-rval[j]) > gamg->threshold*Amax_neg[i])) {
4548e6d0c30SPeter Brune             row_f = i + fs;
4558e6d0c30SPeter Brune             row_c = gcid[col];
4568e6d0c30SPeter Brune             /* set the values for on-processor ones */
4571ce39c63SPeter Brune             if (PetscRealPart(rval[j]) < 0.) {
4581ce39c63SPeter Brune               pij = rval[j]*alpha*invdiag;
4598e6d0c30SPeter Brune             } else {
4601ce39c63SPeter Brune               pij = rval[j]*beta*invdiag;
4618e6d0c30SPeter Brune             }
4628e6d0c30SPeter Brune             if (PetscAbsScalar(pij) != 0.) {
4638e6d0c30SPeter Brune               pvals[idx] = pij;
4648e6d0c30SPeter Brune               pcols[idx] = row_c;
4658e6d0c30SPeter Brune               idx++;
4668e6d0c30SPeter Brune             }
4678e6d0c30SPeter Brune           }
4688e6d0c30SPeter Brune         }
4691ce39c63SPeter Brune         ierr = MatRestoreRow(gA,i,&ncols,&rcol,&rval);CHKERRQ(ierr);
4703c9ab2c3SPeter Brune       }
4718e6d0c30SPeter Brune       ierr = MatSetValues(*P,1,&row_f,idx,pcols,pvals,INSERT_VALUES);CHKERRQ(ierr);
4728e6d0c30SPeter Brune     }
4738e6d0c30SPeter Brune   }
4743c9ab2c3SPeter Brune 
4758e6d0c30SPeter Brune   ierr = MatAssemblyBegin(*P, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
4768e6d0c30SPeter Brune   ierr = MatAssemblyEnd(*P, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
4778e6d0c30SPeter Brune 
4788e6d0c30SPeter Brune   ierr = PetscFree(lsparse);CHKERRQ(ierr);
4798e6d0c30SPeter Brune   ierr = PetscFree(gsparse);CHKERRQ(ierr);
4808e6d0c30SPeter Brune   ierr = PetscFree(pcols);CHKERRQ(ierr);
4818e6d0c30SPeter Brune   ierr = PetscFree(pvals);CHKERRQ(ierr);
4821ce39c63SPeter Brune   ierr = PetscFree(Amax_pos);CHKERRQ(ierr);
4831ce39c63SPeter Brune   ierr = PetscFree(Amax_neg);CHKERRQ(ierr);
4848e6d0c30SPeter Brune   ierr = PetscFree(lcid);CHKERRQ(ierr);
48587b9b13cSPeter Brune   if (gA) {
48687b9b13cSPeter Brune     ierr = PetscSFDestroy(&sf);CHKERRQ(ierr);
48787b9b13cSPeter Brune     ierr = PetscFree(gcid);CHKERRQ(ierr);
48887b9b13cSPeter Brune   }
4898e6d0c30SPeter Brune 
4908e6d0c30SPeter Brune   PetscFunctionReturn(0);
4918e6d0c30SPeter Brune }
4928e6d0c30SPeter Brune 
4938e6d0c30SPeter Brune #undef __FUNCT__
494586a8384SPeter Brune #define __FUNCT__ "PCGAMGTruncateProlongator_Private"
495586a8384SPeter Brune PetscErrorCode PCGAMGTruncateProlongator_Private(PC pc,Mat *P)
496586a8384SPeter Brune {
497586a8384SPeter Brune   PetscInt          j,i,ps,pf,pn,pcs,pcf,pcn,idx,cmax;
498586a8384SPeter Brune   PetscErrorCode    ierr;
499586a8384SPeter Brune   const PetscScalar *pval;
500586a8384SPeter Brune   const PetscInt    *pcol;
501586a8384SPeter Brune   PetscScalar       *pnval;
502586a8384SPeter Brune   PetscInt          *pncol;
503586a8384SPeter Brune   PetscInt          ncols;
504586a8384SPeter Brune   Mat               Pnew;
505586a8384SPeter Brune   PetscInt          *lsparse,*gsparse;
506586a8384SPeter Brune   PetscReal         pmax_pos,pmax_neg,ptot_pos,ptot_neg,pthresh_pos,pthresh_neg;
507586a8384SPeter Brune   PC_MG             *mg          = (PC_MG*)pc->data;
508586a8384SPeter Brune   PC_GAMG           *pc_gamg     = (PC_GAMG*)mg->innerctx;
509586a8384SPeter Brune   PC_GAMG_Classical *cls         = (PC_GAMG_Classical*)pc_gamg->subctx;
510*d9558ea9SBarry Smith   MatType           mtype;
511586a8384SPeter Brune 
512586a8384SPeter Brune   PetscFunctionBegin;
513586a8384SPeter Brune   /* trim and rescale with reallocation */
514586a8384SPeter Brune   ierr = MatGetOwnershipRange(*P,&ps,&pf);CHKERRQ(ierr);
515586a8384SPeter Brune   ierr = MatGetOwnershipRangeColumn(*P,&pcs,&pcf);CHKERRQ(ierr);
516586a8384SPeter Brune   pn = pf-ps;
517586a8384SPeter Brune   pcn = pcf-pcs;
51889d949e2SBarry Smith   ierr = PetscMalloc1(pn,&lsparse);CHKERRQ(ierr);
51989d949e2SBarry Smith   ierr = PetscMalloc1(pn,&gsparse);CHKERRQ(ierr);
520586a8384SPeter Brune   /* allocate */
521586a8384SPeter Brune   cmax = 0;
522586a8384SPeter Brune   for (i=ps;i<pf;i++) {
523b4dc3ebdSPeter Brune     lsparse[i-ps] = 0;
524b4dc3ebdSPeter Brune     gsparse[i-ps] = 0;
525586a8384SPeter Brune     ierr = MatGetRow(*P,i,&ncols,&pcol,&pval);CHKERRQ(ierr);
526586a8384SPeter Brune     if (ncols > cmax) {
527586a8384SPeter Brune       cmax = ncols;
528586a8384SPeter Brune     }
529586a8384SPeter Brune     pmax_pos = 0.;
530586a8384SPeter Brune     pmax_neg = 0.;
531586a8384SPeter Brune     for (j=0;j<ncols;j++) {
532586a8384SPeter Brune       if (PetscRealPart(pval[j]) > pmax_pos) {
533586a8384SPeter Brune         pmax_pos = PetscRealPart(pval[j]);
534586a8384SPeter Brune       } else if (PetscRealPart(pval[j]) < pmax_neg) {
535586a8384SPeter Brune         pmax_neg = PetscRealPart(pval[j]);
536586a8384SPeter Brune       }
537586a8384SPeter Brune     }
538586a8384SPeter Brune     for (j=0;j<ncols;j++) {
5398eab0cc1SPeter Brune       if (PetscRealPart(pval[j]) >= pmax_pos*cls->interp_threshold || PetscRealPart(pval[j]) <= pmax_neg*cls->interp_threshold) {
540b4dc3ebdSPeter Brune         if (pcol[j] >= pcs && pcol[j] < pcf) {
541b4dc3ebdSPeter Brune           lsparse[i-ps]++;
542586a8384SPeter Brune         } else {
543b4dc3ebdSPeter Brune           gsparse[i-ps]++;
544586a8384SPeter Brune         }
545586a8384SPeter Brune       }
546586a8384SPeter Brune     }
547586a8384SPeter Brune     ierr = MatRestoreRow(*P,i,&ncols,&pcol,&pval);CHKERRQ(ierr);
548586a8384SPeter Brune   }
549586a8384SPeter Brune 
55089d949e2SBarry Smith   ierr = PetscMalloc1(cmax,&pnval);CHKERRQ(ierr);
55189d949e2SBarry Smith   ierr = PetscMalloc1(cmax,&pncol);CHKERRQ(ierr);
552586a8384SPeter Brune 
553*d9558ea9SBarry Smith   ierr = MatGetType(*P,&mtype);CHKERRQ(ierr);
554586a8384SPeter Brune   ierr = MatCreate(PetscObjectComm((PetscObject)*P),&Pnew);CHKERRQ(ierr);
555*d9558ea9SBarry Smith   ierr = MatSetType(Pnew, mtype);CHKERRQ(ierr);
556586a8384SPeter Brune   ierr = MatSetSizes(Pnew,pn,pcn,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
557586a8384SPeter Brune   ierr = MatSeqAIJSetPreallocation(Pnew,0,lsparse);CHKERRQ(ierr);
558586a8384SPeter Brune   ierr = MatMPIAIJSetPreallocation(Pnew,0,lsparse,0,gsparse);CHKERRQ(ierr);
559586a8384SPeter Brune 
560586a8384SPeter Brune   for (i=ps;i<pf;i++) {
561586a8384SPeter Brune     ierr = MatGetRow(*P,i,&ncols,&pcol,&pval);CHKERRQ(ierr);
562586a8384SPeter Brune     pmax_pos = 0.;
563586a8384SPeter Brune     pmax_neg = 0.;
564586a8384SPeter Brune     for (j=0;j<ncols;j++) {
565586a8384SPeter Brune       if (PetscRealPart(pval[j]) > pmax_pos) {
566586a8384SPeter Brune         pmax_pos = PetscRealPart(pval[j]);
567586a8384SPeter Brune       } else if (PetscRealPart(pval[j]) < pmax_neg) {
568586a8384SPeter Brune         pmax_neg = PetscRealPart(pval[j]);
569586a8384SPeter Brune       }
570586a8384SPeter Brune     }
571586a8384SPeter Brune     pthresh_pos = 0.;
572586a8384SPeter Brune     pthresh_neg = 0.;
573586a8384SPeter Brune     ptot_pos = 0.;
574586a8384SPeter Brune     ptot_neg = 0.;
575586a8384SPeter Brune     for (j=0;j<ncols;j++) {
5768eab0cc1SPeter Brune       if (PetscRealPart(pval[j]) >= cls->interp_threshold*pmax_pos) {
577586a8384SPeter Brune         pthresh_pos += PetscRealPart(pval[j]);
5788eab0cc1SPeter Brune       } else if (PetscRealPart(pval[j]) <= cls->interp_threshold*pmax_neg) {
579586a8384SPeter Brune         pthresh_neg += PetscRealPart(pval[j]);
580586a8384SPeter Brune       }
581586a8384SPeter Brune       if (PetscRealPart(pval[j]) > 0.) {
582586a8384SPeter Brune         ptot_pos += PetscRealPart(pval[j]);
583586a8384SPeter Brune       } else {
584586a8384SPeter Brune         ptot_neg += PetscRealPart(pval[j]);
585586a8384SPeter Brune       }
586586a8384SPeter Brune     }
5876bd8ea90SPeter Brune     if (PetscAbsReal(pthresh_pos) > 0.) ptot_pos /= pthresh_pos;
5886bd8ea90SPeter Brune     if (PetscAbsReal(pthresh_neg) > 0.) ptot_neg /= pthresh_neg;
589586a8384SPeter Brune     idx=0;
590586a8384SPeter Brune     for (j=0;j<ncols;j++) {
5918eab0cc1SPeter Brune       if (PetscRealPart(pval[j]) >= pmax_pos*cls->interp_threshold) {
592586a8384SPeter Brune         pnval[idx] = ptot_pos*pval[j];
593586a8384SPeter Brune         pncol[idx] = pcol[j];
594586a8384SPeter Brune         idx++;
5958eab0cc1SPeter Brune       } else if (PetscRealPart(pval[j]) <= pmax_neg*cls->interp_threshold) {
596586a8384SPeter Brune         pnval[idx] = ptot_neg*pval[j];
597586a8384SPeter Brune         pncol[idx] = pcol[j];
598586a8384SPeter Brune         idx++;
599586a8384SPeter Brune       }
600586a8384SPeter Brune     }
601586a8384SPeter Brune     ierr = MatRestoreRow(*P,i,&ncols,&pcol,&pval);CHKERRQ(ierr);
602586a8384SPeter Brune     ierr = MatSetValues(Pnew,1,&i,idx,pncol,pnval,INSERT_VALUES);CHKERRQ(ierr);
603586a8384SPeter Brune   }
604586a8384SPeter Brune 
605586a8384SPeter Brune   ierr = MatAssemblyBegin(Pnew, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
606586a8384SPeter Brune   ierr = MatAssemblyEnd(Pnew, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
607586a8384SPeter Brune   ierr = MatDestroy(P);CHKERRQ(ierr);
608586a8384SPeter Brune 
609586a8384SPeter Brune   *P = Pnew;
610586a8384SPeter Brune   ierr = PetscFree(lsparse);CHKERRQ(ierr);
611586a8384SPeter Brune   ierr = PetscFree(gsparse);CHKERRQ(ierr);
612586a8384SPeter Brune   ierr = PetscFree(pncol);CHKERRQ(ierr);
613586a8384SPeter Brune   ierr = PetscFree(pnval);CHKERRQ(ierr);
614586a8384SPeter Brune   PetscFunctionReturn(0);
615586a8384SPeter Brune }
616586a8384SPeter Brune 
617586a8384SPeter Brune #undef __FUNCT__
6188eab0cc1SPeter Brune #define __FUNCT__ "PCGAMGProlongator_Classical_Standard"
6192adfe9d3SBarry Smith PetscErrorCode PCGAMGProlongator_Classical_Standard(PC pc, Mat A, Mat G, PetscCoarsenData *agg_lists,Mat *P)
620f9a65ec8SPeter Brune {
621f9a65ec8SPeter Brune   PetscErrorCode    ierr;
622c634539dSPeter Brune   Mat               lA,*lAs;
623f9a65ec8SPeter Brune   MatType           mtype;
62463b0c588SPeter Brune   Vec               cv;
62563b0c588SPeter Brune   PetscInt          *gcid,*lcid,*lsparse,*gsparse,*picol;
626420cd23fSPeter Brune   PetscInt          fs,fe,cs,ce,nl,i,j,k,li,lni,ci,ncols,maxcols,fn,cn,cid;
627420cd23fSPeter Brune   PetscMPIInt       size;
62863b0c588SPeter Brune   const PetscInt    *lidx,*icol,*gidx;
62963b0c588SPeter Brune   PetscBool         iscoarse;
63063b0c588SPeter Brune   PetscScalar       vi,pentry,pjentry;
63163b0c588SPeter Brune   PetscScalar       *pcontrib,*pvcol;
63263b0c588SPeter Brune   const PetscScalar *vcol;
633ed4e82eaSPeter Brune   PetscReal         diag,jdiag,jwttotal;
634f9a65ec8SPeter Brune   PetscInt          pncols;
635c634539dSPeter Brune   PetscSF           sf;
636c634539dSPeter Brune   PetscLayout       clayout;
63763b0c588SPeter Brune   IS                lis;
638f9a65ec8SPeter Brune 
639f9a65ec8SPeter Brune   PetscFunctionBegin;
640c634539dSPeter Brune   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
641f9a65ec8SPeter Brune   ierr = MatGetOwnershipRange(A,&fs,&fe);CHKERRQ(ierr);
642f9a65ec8SPeter Brune   fn = fe-fs;
643f9a65ec8SPeter Brune   ierr = ISCreateStride(PETSC_COMM_SELF,fe-fs,fs,1,&lis);CHKERRQ(ierr);
644c634539dSPeter Brune   if (size > 1) {
645c634539dSPeter Brune     ierr = MatGetLayouts(A,NULL,&clayout);CHKERRQ(ierr);
646f9a65ec8SPeter Brune     /* increase the overlap by two to get neighbors of neighbors */
647f9a65ec8SPeter Brune     ierr = MatIncreaseOverlap(A,1,&lis,2);CHKERRQ(ierr);
648f9a65ec8SPeter Brune     ierr = ISSort(lis);CHKERRQ(ierr);
649f9a65ec8SPeter Brune     /* get the local part of A */
650c634539dSPeter Brune     ierr = MatGetSubMatrices(A,1,&lis,&lis,MAT_INITIAL_MATRIX,&lAs);CHKERRQ(ierr);
651c634539dSPeter Brune     lA = lAs[0];
652c634539dSPeter Brune     /* build an SF out of it */
653f9a65ec8SPeter Brune     ierr = ISGetLocalSize(lis,&nl);CHKERRQ(ierr);
654c634539dSPeter Brune     ierr = PetscSFCreate(PetscObjectComm((PetscObject)A),&sf);CHKERRQ(ierr);
655c634539dSPeter Brune     ierr = ISGetIndices(lis,&lidx);CHKERRQ(ierr);
656c634539dSPeter Brune     ierr = PetscSFSetGraphLayout(sf,clayout,nl,NULL,PETSC_COPY_VALUES,lidx);CHKERRQ(ierr);
657c634539dSPeter Brune     ierr = ISRestoreIndices(lis,&lidx);CHKERRQ(ierr);
658c634539dSPeter Brune   } else {
659c634539dSPeter Brune     lA = A;
660c634539dSPeter Brune     nl = fn;
661c634539dSPeter Brune   }
662c634539dSPeter Brune   /* create a communication structure for the overlapped portion and transmit coarse indices */
66389d949e2SBarry Smith   ierr = PetscMalloc1(fn,&lsparse);CHKERRQ(ierr);
66489d949e2SBarry Smith   ierr = PetscMalloc1(fn,&gsparse);CHKERRQ(ierr);
66589d949e2SBarry Smith   ierr = PetscMalloc1(nl,&pcontrib);CHKERRQ(ierr);
666f9a65ec8SPeter Brune   /* create coarse vector */
667f9a65ec8SPeter Brune   cn = 0;
668f9a65ec8SPeter Brune   for (i=0;i<fn;i++) {
669f9a65ec8SPeter Brune     ierr = PetscCDEmptyAt(agg_lists,i,&iscoarse);CHKERRQ(ierr);
670f9a65ec8SPeter Brune     if (!iscoarse) {
671f9a65ec8SPeter Brune       cn++;
672f9a65ec8SPeter Brune     }
673f9a65ec8SPeter Brune   }
674c634539dSPeter Brune   ierr = PetscMalloc1(fn,&gcid);CHKERRQ(ierr);
675f9a65ec8SPeter Brune   ierr = VecCreateMPI(PetscObjectComm((PetscObject)A),cn,PETSC_DECIDE,&cv);CHKERRQ(ierr);
676f9a65ec8SPeter Brune   ierr = VecGetOwnershipRange(cv,&cs,&ce);CHKERRQ(ierr);
677f9a65ec8SPeter Brune   cn = 0;
678f9a65ec8SPeter Brune   for (i=0;i<fn;i++) {
679f9a65ec8SPeter Brune     ierr = PetscCDEmptyAt(agg_lists,i,&iscoarse); CHKERRQ(ierr);
680f9a65ec8SPeter Brune     if (!iscoarse) {
681c634539dSPeter Brune       gcid[i] = cs+cn;
682f9a65ec8SPeter Brune       cn++;
683f9a65ec8SPeter Brune     } else {
684c634539dSPeter Brune       gcid[i] = -1;
685f9a65ec8SPeter Brune     }
686f9a65ec8SPeter Brune   }
687c634539dSPeter Brune   if (size > 1) {
688c634539dSPeter Brune     ierr = PetscMalloc1(nl,&lcid);CHKERRQ(ierr);
689c634539dSPeter Brune     ierr = PetscSFBcastBegin(sf,MPIU_INT,gcid,lcid);CHKERRQ(ierr);
690c634539dSPeter Brune     ierr = PetscSFBcastEnd(sf,MPIU_INT,gcid,lcid);CHKERRQ(ierr);
691c634539dSPeter Brune   } else {
692c634539dSPeter Brune     lcid = gcid;
693c634539dSPeter Brune   }
694f9a65ec8SPeter Brune   /* count to preallocate the prolongator */
695f9a65ec8SPeter Brune   ierr = ISGetIndices(lis,&gidx);CHKERRQ(ierr);
696f9a65ec8SPeter Brune   maxcols = 0;
697f9a65ec8SPeter Brune   /* count the number of unique contributing coarse cells for each fine */
698f9a65ec8SPeter Brune   for (i=0;i<nl;i++) {
699ed4e82eaSPeter Brune     pcontrib[i] = 0.;
700c634539dSPeter Brune     ierr = MatGetRow(lA,i,&ncols,&icol,NULL);CHKERRQ(ierr);
701f9a65ec8SPeter Brune     if (gidx[i] >= fs && gidx[i] < fe) {
702f9a65ec8SPeter Brune       li = gidx[i] - fs;
703f9a65ec8SPeter Brune       lsparse[li] = 0;
704f9a65ec8SPeter Brune       gsparse[li] = 0;
705c634539dSPeter Brune       cid = lcid[i];
706f9a65ec8SPeter Brune       if (cid >= 0) {
707f9a65ec8SPeter Brune         lsparse[li] = 1;
708f9a65ec8SPeter Brune       } else {
709f9a65ec8SPeter Brune         for (j=0;j<ncols;j++) {
710c634539dSPeter Brune           if (lcid[icol[j]] >= 0) {
711f9a65ec8SPeter Brune             pcontrib[icol[j]] = 1.;
712f9a65ec8SPeter Brune           } else {
713f9a65ec8SPeter Brune             ci = icol[j];
714c634539dSPeter Brune             ierr = MatRestoreRow(lA,i,&ncols,&icol,NULL);CHKERRQ(ierr);
715c634539dSPeter Brune             ierr = MatGetRow(lA,ci,&ncols,&icol,NULL);CHKERRQ(ierr);
716f9a65ec8SPeter Brune             for (k=0;k<ncols;k++) {
717c634539dSPeter Brune               if (lcid[icol[k]] >= 0) {
718f9a65ec8SPeter Brune                 pcontrib[icol[k]] = 1.;
719f9a65ec8SPeter Brune               }
720f9a65ec8SPeter Brune             }
721c634539dSPeter Brune             ierr = MatRestoreRow(lA,ci,&ncols,&icol,NULL);CHKERRQ(ierr);
722c634539dSPeter Brune             ierr = MatGetRow(lA,i,&ncols,&icol,NULL);CHKERRQ(ierr);
723f9a65ec8SPeter Brune           }
724f9a65ec8SPeter Brune         }
725f9a65ec8SPeter Brune         for (j=0;j<ncols;j++) {
726c634539dSPeter Brune           if (lcid[icol[j]] >= 0 && pcontrib[icol[j]] != 0.) {
727c634539dSPeter Brune             lni = lcid[icol[j]];
728f9a65ec8SPeter Brune             if (lni >= cs && lni < ce) {
729f9a65ec8SPeter Brune               lsparse[li]++;
730f9a65ec8SPeter Brune             } else {
731f9a65ec8SPeter Brune               gsparse[li]++;
732f9a65ec8SPeter Brune             }
733f9a65ec8SPeter Brune             pcontrib[icol[j]] = 0.;
734f9a65ec8SPeter Brune           } else {
735f9a65ec8SPeter Brune             ci = icol[j];
736c634539dSPeter Brune             ierr = MatRestoreRow(lA,i,&ncols,&icol,NULL);CHKERRQ(ierr);
737c634539dSPeter Brune             ierr = MatGetRow(lA,ci,&ncols,&icol,NULL);CHKERRQ(ierr);
738f9a65ec8SPeter Brune             for (k=0;k<ncols;k++) {
739c634539dSPeter Brune               if (lcid[icol[k]] >= 0 && pcontrib[icol[k]] != 0.) {
740c634539dSPeter Brune                 lni = lcid[icol[k]];
741f9a65ec8SPeter Brune                 if (lni >= cs && lni < ce) {
742f9a65ec8SPeter Brune                   lsparse[li]++;
743f9a65ec8SPeter Brune                 } else {
744f9a65ec8SPeter Brune                   gsparse[li]++;
745f9a65ec8SPeter Brune                 }
746f9a65ec8SPeter Brune                 pcontrib[icol[k]] = 0.;
747f9a65ec8SPeter Brune               }
748f9a65ec8SPeter Brune             }
749c634539dSPeter Brune             ierr = MatRestoreRow(lA,ci,&ncols,&icol,NULL);CHKERRQ(ierr);
750c634539dSPeter Brune             ierr = MatGetRow(lA,i,&ncols,&icol,NULL);CHKERRQ(ierr);
751f9a65ec8SPeter Brune           }
752f9a65ec8SPeter Brune         }
753ed4e82eaSPeter Brune       }
754f9a65ec8SPeter Brune       if (lsparse[li] + gsparse[li] > maxcols) maxcols = lsparse[li]+gsparse[li];
755ed4e82eaSPeter Brune     }
756c634539dSPeter Brune     ierr = MatRestoreRow(lA,i,&ncols,&icol,&vcol);CHKERRQ(ierr);
757f9a65ec8SPeter Brune   }
75889d949e2SBarry Smith   ierr = PetscMalloc1(maxcols,&picol);CHKERRQ(ierr);
75989d949e2SBarry Smith   ierr = PetscMalloc1(maxcols,&pvcol);CHKERRQ(ierr);
760f9a65ec8SPeter Brune   ierr = MatCreate(PetscObjectComm((PetscObject)A),P);CHKERRQ(ierr);
761f9a65ec8SPeter Brune   ierr = MatGetType(A,&mtype);CHKERRQ(ierr);
762f9a65ec8SPeter Brune   ierr = MatSetType(*P,mtype);CHKERRQ(ierr);
763f9a65ec8SPeter Brune   ierr = MatSetSizes(*P,fn,cn,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
764f9a65ec8SPeter Brune   ierr = MatMPIAIJSetPreallocation(*P,0,lsparse,0,gsparse);CHKERRQ(ierr);
765f9a65ec8SPeter Brune   ierr = MatSeqAIJSetPreallocation(*P,0,lsparse);CHKERRQ(ierr);
766f9a65ec8SPeter Brune   for (i=0;i<nl;i++) {
767ed4e82eaSPeter Brune     diag = 0.;
768f9a65ec8SPeter Brune     if (gidx[i] >= fs && gidx[i] < fe) {
769f9a65ec8SPeter Brune       li = gidx[i] - fs;
770f9a65ec8SPeter Brune       pncols=0;
771c634539dSPeter Brune       cid = lcid[i];
772f9a65ec8SPeter Brune       if (cid >= 0) {
773f9a65ec8SPeter Brune         pncols = 1;
774f9a65ec8SPeter Brune         picol[0] = cid;
775f9a65ec8SPeter Brune         pvcol[0] = 1.;
776f9a65ec8SPeter Brune       } else {
777c634539dSPeter Brune         ierr = MatGetRow(lA,i,&ncols,&icol,&vcol);CHKERRQ(ierr);
778f9a65ec8SPeter Brune         for (j=0;j<ncols;j++) {
779ed4e82eaSPeter Brune           pentry = vcol[j];
780c634539dSPeter Brune           if (lcid[icol[j]] >= 0) {
781f9a65ec8SPeter Brune             /* coarse neighbor */
782ed4e82eaSPeter Brune             pcontrib[icol[j]] += pentry;
783ed4e82eaSPeter Brune           } else if (icol[j] != i) {
784f9a65ec8SPeter Brune             /* the neighbor is a strongly connected fine node */
785f9a65ec8SPeter Brune             ci = icol[j];
786f9a65ec8SPeter Brune             vi = vcol[j];
787c634539dSPeter Brune             ierr = MatRestoreRow(lA,i,&ncols,&icol,&vcol);CHKERRQ(ierr);
788c634539dSPeter Brune             ierr = MatGetRow(lA,ci,&ncols,&icol,&vcol);CHKERRQ(ierr);
789ed4e82eaSPeter Brune             jwttotal=0.;
790f9a65ec8SPeter Brune             jdiag = 0.;
791f9a65ec8SPeter Brune             for (k=0;k<ncols;k++) {
792ed4e82eaSPeter Brune               if (ci == icol[k]) {
7937779008dSPeter Brune                 jdiag = PetscRealPart(vcol[k]);
794f9a65ec8SPeter Brune               }
795f9a65ec8SPeter Brune             }
796f9a65ec8SPeter Brune             for (k=0;k<ncols;k++) {
797c634539dSPeter Brune               if (lcid[icol[k]] >= 0 && jdiag*PetscRealPart(vcol[k]) < 0.) {
798ed4e82eaSPeter Brune                 pjentry = vcol[k];
7997779008dSPeter Brune                 jwttotal += PetscRealPart(pjentry);
800f9a65ec8SPeter Brune               }
801f9a65ec8SPeter Brune             }
802ed4e82eaSPeter Brune             if (jwttotal != 0.) {
8037779008dSPeter Brune               jwttotal = PetscRealPart(vi)/jwttotal;
804ed4e82eaSPeter Brune               for (k=0;k<ncols;k++) {
805c634539dSPeter Brune                 if (lcid[icol[k]] >= 0 && jdiag*PetscRealPart(vcol[k]) < 0.) {
806586a8384SPeter Brune                   pjentry = vcol[k]*jwttotal;
807ed4e82eaSPeter Brune                   pcontrib[icol[k]] += pjentry;
808ed4e82eaSPeter Brune                 }
809ed4e82eaSPeter Brune               }
810ed4e82eaSPeter Brune             } else {
811ed4e82eaSPeter Brune               diag += PetscRealPart(vi);
812ed4e82eaSPeter Brune             }
813c634539dSPeter Brune             ierr = MatRestoreRow(lA,ci,&ncols,&icol,&vcol);CHKERRQ(ierr);
814c634539dSPeter Brune             ierr = MatGetRow(lA,i,&ncols,&icol,&vcol);CHKERRQ(ierr);
815ed4e82eaSPeter Brune           } else {
816ed4e82eaSPeter Brune             diag += PetscRealPart(vcol[j]);
817f9a65ec8SPeter Brune           }
818f9a65ec8SPeter Brune         }
819586a8384SPeter Brune         if (diag != 0.) {
820586a8384SPeter Brune           diag = 1./diag;
821f9a65ec8SPeter Brune           for (j=0;j<ncols;j++) {
822c634539dSPeter Brune             if (lcid[icol[j]] >= 0 && pcontrib[icol[j]] != 0.) {
823f9a65ec8SPeter Brune               /* the neighbor is a coarse node */
824ed4e82eaSPeter Brune               if (PetscAbsScalar(pcontrib[icol[j]]) > 0.0) {
825c634539dSPeter Brune                 lni = lcid[icol[j]];
826586a8384SPeter Brune                 pvcol[pncols] = -pcontrib[icol[j]]*diag;
827f9a65ec8SPeter Brune                 picol[pncols] = lni;
828f9a65ec8SPeter Brune                 pncols++;
829ed4e82eaSPeter Brune               }
830ed4e82eaSPeter Brune               pcontrib[icol[j]] = 0.;
831f9a65ec8SPeter Brune             } else {
832f9a65ec8SPeter Brune               /* the neighbor is a strongly connected fine node */
833f9a65ec8SPeter Brune               ci = icol[j];
834c634539dSPeter Brune               ierr = MatRestoreRow(lA,i,&ncols,&icol,&vcol);CHKERRQ(ierr);
835c634539dSPeter Brune               ierr = MatGetRow(lA,ci,&ncols,&icol,&vcol);CHKERRQ(ierr);
836f9a65ec8SPeter Brune               for (k=0;k<ncols;k++) {
837c634539dSPeter Brune                 if (lcid[icol[k]] >= 0 && pcontrib[icol[k]] != 0.) {
838ed4e82eaSPeter Brune                   if (PetscAbsScalar(pcontrib[icol[k]]) > 0.0) {
839c634539dSPeter Brune                     lni = lcid[icol[k]];
840586a8384SPeter Brune                     pvcol[pncols] = -pcontrib[icol[k]]*diag;
841f9a65ec8SPeter Brune                     picol[pncols] = lni;
842f9a65ec8SPeter Brune                     pncols++;
843f9a65ec8SPeter Brune                   }
844ed4e82eaSPeter Brune                   pcontrib[icol[k]] = 0.;
845ed4e82eaSPeter Brune                 }
846f9a65ec8SPeter Brune               }
847c634539dSPeter Brune               ierr = MatRestoreRow(lA,ci,&ncols,&icol,&vcol);CHKERRQ(ierr);
848c634539dSPeter Brune               ierr = MatGetRow(lA,i,&ncols,&icol,&vcol);CHKERRQ(ierr);
849f9a65ec8SPeter Brune             }
850ed4e82eaSPeter Brune             pcontrib[icol[j]] = 0.;
851f9a65ec8SPeter Brune           }
852c634539dSPeter Brune           ierr = MatRestoreRow(lA,i,&ncols,&icol,&vcol);CHKERRQ(ierr);
853f9a65ec8SPeter Brune         }
854586a8384SPeter Brune       }
855f9a65ec8SPeter Brune       ci = gidx[i];
856f9a65ec8SPeter Brune       li = gidx[i] - fs;
857f9a65ec8SPeter Brune       if (pncols > 0) {
858f9a65ec8SPeter Brune         ierr = MatSetValues(*P,1,&ci,pncols,picol,pvcol,INSERT_VALUES);CHKERRQ(ierr);
859f9a65ec8SPeter Brune       }
860f9a65ec8SPeter Brune     }
861f9a65ec8SPeter Brune   }
862f9a65ec8SPeter Brune   ierr = ISRestoreIndices(lis,&gidx);CHKERRQ(ierr);
863f9a65ec8SPeter Brune   ierr = PetscFree(pcontrib);CHKERRQ(ierr);
864f9a65ec8SPeter Brune   ierr = PetscFree(picol);CHKERRQ(ierr);
865f9a65ec8SPeter Brune   ierr = PetscFree(pvcol);CHKERRQ(ierr);
866f9a65ec8SPeter Brune   ierr = PetscFree(lsparse);CHKERRQ(ierr);
867f9a65ec8SPeter Brune   ierr = PetscFree(gsparse);CHKERRQ(ierr);
868f9a65ec8SPeter Brune   ierr = ISDestroy(&lis);CHKERRQ(ierr);
869c634539dSPeter Brune   ierr = PetscFree(gcid);CHKERRQ(ierr);
870c634539dSPeter Brune   if (size > 1) {
871c634539dSPeter Brune     ierr = PetscFree(lcid);CHKERRQ(ierr);
872c634539dSPeter Brune     ierr = MatDestroyMatrices(1,&lAs);CHKERRQ(ierr);
873c634539dSPeter Brune     ierr = PetscSFDestroy(&sf);CHKERRQ(ierr);
874c634539dSPeter Brune   }
875f9a65ec8SPeter Brune   ierr = VecDestroy(&cv);CHKERRQ(ierr);
876f9a65ec8SPeter Brune   ierr = MatAssemblyBegin(*P, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
877f9a65ec8SPeter Brune   ierr = MatAssemblyEnd(*P, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8788eab0cc1SPeter Brune   PetscFunctionReturn(0);
8798eab0cc1SPeter Brune }
880f9a65ec8SPeter Brune 
8818eab0cc1SPeter Brune #undef __FUNCT__
882fd1112cbSBarry Smith #define __FUNCT__ "PCGAMGOptProlongator_Classical_Jacobi"
8832adfe9d3SBarry Smith PetscErrorCode PCGAMGOptProlongator_Classical_Jacobi(PC pc,Mat A,Mat *P)
884b4dc3ebdSPeter Brune {
885b4dc3ebdSPeter Brune 
886b4dc3ebdSPeter Brune   PetscErrorCode    ierr;
887b4dc3ebdSPeter Brune   PetscInt          f,s,n,cf,cs,i,idx;
888b4dc3ebdSPeter Brune   PetscInt          *coarserows;
889b4dc3ebdSPeter Brune   PetscInt          ncols;
890b4dc3ebdSPeter Brune   const PetscInt    *pcols;
891b4dc3ebdSPeter Brune   const PetscScalar *pvals;
892b4dc3ebdSPeter Brune   Mat               Pnew;
893b4dc3ebdSPeter Brune   Vec               diag;
894b4dc3ebdSPeter Brune   PC_MG             *mg          = (PC_MG*)pc->data;
895b4dc3ebdSPeter Brune   PC_GAMG           *pc_gamg     = (PC_GAMG*)mg->innerctx;
896b4dc3ebdSPeter Brune   PC_GAMG_Classical *cls         = (PC_GAMG_Classical*)pc_gamg->subctx;
897b4dc3ebdSPeter Brune 
898b4dc3ebdSPeter Brune   PetscFunctionBegin;
899b4dc3ebdSPeter Brune   if (cls->nsmooths == 0) {
900b4dc3ebdSPeter Brune     ierr = PCGAMGTruncateProlongator_Private(pc,P);CHKERRQ(ierr);
901b4dc3ebdSPeter Brune     PetscFunctionReturn(0);
902b4dc3ebdSPeter Brune   }
903b4dc3ebdSPeter Brune   ierr = MatGetOwnershipRange(*P,&s,&f);CHKERRQ(ierr);
904b4dc3ebdSPeter Brune   n = f-s;
905b4dc3ebdSPeter Brune   ierr = MatGetOwnershipRangeColumn(*P,&cs,&cf);CHKERRQ(ierr);
90689d949e2SBarry Smith   ierr = PetscMalloc1(n,&coarserows);CHKERRQ(ierr);
907b4dc3ebdSPeter Brune   /* identify the rows corresponding to coarse unknowns */
908b4dc3ebdSPeter Brune   idx = 0;
909b4dc3ebdSPeter Brune   for (i=s;i<f;i++) {
910b4dc3ebdSPeter Brune     ierr = MatGetRow(*P,i,&ncols,&pcols,&pvals);CHKERRQ(ierr);
911b4dc3ebdSPeter Brune     /* assume, for now, that it's a coarse unknown if it has a single unit entry */
912b4dc3ebdSPeter Brune     if (ncols == 1) {
913b4dc3ebdSPeter Brune       if (pvals[0] == 1.) {
914b4dc3ebdSPeter Brune         coarserows[idx] = i;
915b4dc3ebdSPeter Brune         idx++;
916b4dc3ebdSPeter Brune       }
917b4dc3ebdSPeter Brune     }
918b4dc3ebdSPeter Brune     ierr = MatRestoreRow(*P,i,&ncols,&pcols,&pvals);CHKERRQ(ierr);
919b4dc3ebdSPeter Brune   }
9202a7a6963SBarry Smith   ierr = MatCreateVecs(A,&diag,0);CHKERRQ(ierr);
921b4dc3ebdSPeter Brune   ierr = MatGetDiagonal(A,diag);CHKERRQ(ierr);
922b4dc3ebdSPeter Brune   ierr = VecReciprocal(diag);CHKERRQ(ierr);
923b4dc3ebdSPeter Brune   for (i=0;i<cls->nsmooths;i++) {
924b4dc3ebdSPeter Brune     ierr = MatMatMult(A,*P,MAT_INITIAL_MATRIX,PETSC_DEFAULT,&Pnew);CHKERRQ(ierr);
925b4dc3ebdSPeter Brune     ierr = MatZeroRows(Pnew,idx,coarserows,0.,NULL,NULL);CHKERRQ(ierr);
926b4dc3ebdSPeter Brune     ierr = MatDiagonalScale(Pnew,diag,0);CHKERRQ(ierr);
927b4dc3ebdSPeter Brune     ierr = MatAYPX(Pnew,-1.0,*P,DIFFERENT_NONZERO_PATTERN);CHKERRQ(ierr);
928b4dc3ebdSPeter Brune     ierr = MatDestroy(P);CHKERRQ(ierr);
929b4dc3ebdSPeter Brune     *P  = Pnew;
930b4dc3ebdSPeter Brune     Pnew = NULL;
931b4dc3ebdSPeter Brune   }
932b4dc3ebdSPeter Brune   ierr = VecDestroy(&diag);CHKERRQ(ierr);
933b4dc3ebdSPeter Brune   ierr = PetscFree(coarserows);CHKERRQ(ierr);
934b4dc3ebdSPeter Brune   ierr = PCGAMGTruncateProlongator_Private(pc,P);CHKERRQ(ierr);
935b4dc3ebdSPeter Brune   PetscFunctionReturn(0);
936b4dc3ebdSPeter Brune }
937b4dc3ebdSPeter Brune 
938b4dc3ebdSPeter Brune #undef __FUNCT__
9398eab0cc1SPeter Brune #define __FUNCT__ "PCGAMGProlongator_Classical"
9402adfe9d3SBarry Smith PetscErrorCode PCGAMGProlongator_Classical(PC pc, Mat A, Mat G, PetscCoarsenData *agg_lists,Mat *P)
9418eab0cc1SPeter Brune {
9428eab0cc1SPeter Brune   PetscErrorCode    ierr;
9438eab0cc1SPeter Brune   PetscErrorCode    (*f)(PC,Mat,Mat,PetscCoarsenData*,Mat*);
9448eab0cc1SPeter Brune   PC_MG             *mg          = (PC_MG*)pc->data;
9458eab0cc1SPeter Brune   PC_GAMG           *pc_gamg     = (PC_GAMG*)mg->innerctx;
9468eab0cc1SPeter Brune   PC_GAMG_Classical *cls         = (PC_GAMG_Classical*)pc_gamg->subctx;
9478eab0cc1SPeter Brune 
9488eab0cc1SPeter Brune   PetscFunctionBegin;
9498eab0cc1SPeter Brune   ierr = PetscFunctionListFind(PCGAMGClassicalProlongatorList,cls->prolongtype,&f);CHKERRQ(ierr);
9508eab0cc1SPeter Brune   if (!f)SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_ARG_WRONGSTATE,"Cannot find PCGAMG Classical prolongator type");
9518eab0cc1SPeter Brune   ierr = (*f)(pc,A,G,agg_lists,P);CHKERRQ(ierr);
952f9a65ec8SPeter Brune   PetscFunctionReturn(0);
953f9a65ec8SPeter Brune }
954f9a65ec8SPeter Brune 
955f9a65ec8SPeter Brune #undef __FUNCT__
9568e6d0c30SPeter Brune #define __FUNCT__ "PCGAMGDestroy_Classical"
9578e6d0c30SPeter Brune PetscErrorCode PCGAMGDestroy_Classical(PC pc)
9588e6d0c30SPeter Brune {
9598e6d0c30SPeter Brune   PetscErrorCode ierr;
9608e6d0c30SPeter Brune   PC_MG          *mg          = (PC_MG*)pc->data;
9618e6d0c30SPeter Brune   PC_GAMG        *pc_gamg     = (PC_GAMG*)mg->innerctx;
9628e6d0c30SPeter Brune 
9638e6d0c30SPeter Brune   PetscFunctionBegin;
9648e6d0c30SPeter Brune   ierr = PetscFree(pc_gamg->subctx);CHKERRQ(ierr);
9658eab0cc1SPeter Brune   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCGAMGClassicalSetType_C",NULL);CHKERRQ(ierr);
966c60c7ad4SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCGAMGClassicalGetType_C",NULL);CHKERRQ(ierr);
9678e6d0c30SPeter Brune   PetscFunctionReturn(0);
9688e6d0c30SPeter Brune }
9698e6d0c30SPeter Brune 
9708e6d0c30SPeter Brune #undef __FUNCT__
9718e6d0c30SPeter Brune #define __FUNCT__ "PCGAMGSetFromOptions_Classical"
9728c34d3f5SBarry Smith PetscErrorCode PCGAMGSetFromOptions_Classical(PetscOptions *PetscOptionsObject,PC pc)
9738e6d0c30SPeter Brune {
974586a8384SPeter Brune   PC_MG             *mg          = (PC_MG*)pc->data;
975586a8384SPeter Brune   PC_GAMG           *pc_gamg     = (PC_GAMG*)mg->innerctx;
976586a8384SPeter Brune   PC_GAMG_Classical *cls         = (PC_GAMG_Classical*)pc_gamg->subctx;
9778eab0cc1SPeter Brune   char              tname[256];
978586a8384SPeter Brune   PetscErrorCode    ierr;
9798eab0cc1SPeter Brune   PetscBool         flg;
980586a8384SPeter Brune 
9818e6d0c30SPeter Brune   PetscFunctionBegin;
9821a1499c8SBarry Smith   ierr = PetscOptionsHead(PetscOptionsObject,"GAMG-Classical options");CHKERRQ(ierr);
983c60c7ad4SBarry Smith   ierr = PetscOptionsFList("-pc_gamg_classical_type","Type of Classical AMG prolongation","PCGAMGClassicalSetType",PCGAMGClassicalProlongatorList,cls->prolongtype, tname, sizeof(tname), &flg);CHKERRQ(ierr);
9848eab0cc1SPeter Brune   if (flg) {
9858eab0cc1SPeter Brune     ierr = PCGAMGClassicalSetType(pc,tname);CHKERRQ(ierr);
9868eab0cc1SPeter Brune   }
987b4dc3ebdSPeter Brune   ierr = PetscOptionsReal("-pc_gamg_classical_interp_threshold","Threshold for classical interpolator entries","",cls->interp_threshold,&cls->interp_threshold,NULL);CHKERRQ(ierr);
988b4dc3ebdSPeter Brune   ierr = PetscOptionsInt("-pc_gamg_classical_nsmooths","Threshold for classical interpolator entries","",cls->nsmooths,&cls->nsmooths,NULL);CHKERRQ(ierr);
989586a8384SPeter Brune   ierr = PetscOptionsTail();CHKERRQ(ierr);
9908e6d0c30SPeter Brune   PetscFunctionReturn(0);
9918e6d0c30SPeter Brune }
9928e6d0c30SPeter Brune 
9938e6d0c30SPeter Brune #undef __FUNCT__
9948e6d0c30SPeter Brune #define __FUNCT__ "PCGAMGSetData_Classical"
9958e6d0c30SPeter Brune PetscErrorCode PCGAMGSetData_Classical(PC pc, Mat A)
9968e6d0c30SPeter Brune {
9978e6d0c30SPeter Brune   PC_MG          *mg      = (PC_MG*)pc->data;
9988e6d0c30SPeter Brune   PC_GAMG        *pc_gamg = (PC_GAMG*)mg->innerctx;
9998e6d0c30SPeter Brune 
10008e6d0c30SPeter Brune   PetscFunctionBegin;
10018e6d0c30SPeter Brune   /* no data for classical AMG */
10028e6d0c30SPeter Brune   pc_gamg->data = NULL;
1003d2050638SMark Adams   pc_gamg->data_cell_cols = 0;
1004d2050638SMark Adams   pc_gamg->data_cell_rows = 0;
10058e6d0c30SPeter Brune   pc_gamg->data_sz        = 0;
10068e6d0c30SPeter Brune   PetscFunctionReturn(0);
10078e6d0c30SPeter Brune }
10088e6d0c30SPeter Brune 
10098eab0cc1SPeter Brune 
10108eab0cc1SPeter Brune #undef __FUNCT__
10118eab0cc1SPeter Brune #define __FUNCT__ "PCGAMGClassicalFinalizePackage"
10128eab0cc1SPeter Brune PetscErrorCode PCGAMGClassicalFinalizePackage(void)
10138eab0cc1SPeter Brune {
10148eab0cc1SPeter Brune   PetscErrorCode ierr;
10158eab0cc1SPeter Brune 
10168eab0cc1SPeter Brune   PetscFunctionBegin;
10178eab0cc1SPeter Brune   PCGAMGClassicalPackageInitialized = PETSC_FALSE;
10188eab0cc1SPeter Brune   ierr = PetscFunctionListDestroy(&PCGAMGClassicalProlongatorList);CHKERRQ(ierr);
10198eab0cc1SPeter Brune   PetscFunctionReturn(0);
10208eab0cc1SPeter Brune }
10218eab0cc1SPeter Brune 
10228eab0cc1SPeter Brune #undef __FUNCT__
10238eab0cc1SPeter Brune #define __FUNCT__ "PCGAMGClassicalInitializePackage"
10248eab0cc1SPeter Brune PetscErrorCode PCGAMGClassicalInitializePackage(void)
10258eab0cc1SPeter Brune {
10268eab0cc1SPeter Brune   PetscErrorCode ierr;
10278eab0cc1SPeter Brune 
10288eab0cc1SPeter Brune   PetscFunctionBegin;
10298eab0cc1SPeter Brune   if (PCGAMGClassicalPackageInitialized) PetscFunctionReturn(0);
10307779008dSPeter Brune   ierr = PetscFunctionListAdd(&PCGAMGClassicalProlongatorList,PCGAMGCLASSICALDIRECT,PCGAMGProlongator_Classical_Direct);CHKERRQ(ierr);
10317779008dSPeter Brune   ierr = PetscFunctionListAdd(&PCGAMGClassicalProlongatorList,PCGAMGCLASSICALSTANDARD,PCGAMGProlongator_Classical_Standard);CHKERRQ(ierr);
10328eab0cc1SPeter Brune   ierr = PetscRegisterFinalize(PCGAMGClassicalFinalizePackage);CHKERRQ(ierr);
10338eab0cc1SPeter Brune   PetscFunctionReturn(0);
10348eab0cc1SPeter Brune }
10358eab0cc1SPeter Brune 
10368e6d0c30SPeter Brune /* -------------------------------------------------------------------------- */
10378e6d0c30SPeter Brune /*
10388e6d0c30SPeter Brune    PCCreateGAMG_Classical
10398e6d0c30SPeter Brune 
10408e6d0c30SPeter Brune */
10418e6d0c30SPeter Brune #undef __FUNCT__
10428e6d0c30SPeter Brune #define __FUNCT__ "PCCreateGAMG_Classical"
10438e6d0c30SPeter Brune PetscErrorCode  PCCreateGAMG_Classical(PC pc)
10448e6d0c30SPeter Brune {
10458e6d0c30SPeter Brune   PetscErrorCode ierr;
10468e6d0c30SPeter Brune   PC_MG             *mg      = (PC_MG*)pc->data;
10478e6d0c30SPeter Brune   PC_GAMG           *pc_gamg = (PC_GAMG*)mg->innerctx;
10488e6d0c30SPeter Brune   PC_GAMG_Classical *pc_gamg_classical;
10498e6d0c30SPeter Brune 
10508e6d0c30SPeter Brune   PetscFunctionBegin;
10518eab0cc1SPeter Brune   ierr = PCGAMGClassicalInitializePackage();
10528e6d0c30SPeter Brune   if (pc_gamg->subctx) {
10538e6d0c30SPeter Brune     /* call base class */
10548e6d0c30SPeter Brune     ierr = PCDestroy_GAMG(pc);CHKERRQ(ierr);
10558e6d0c30SPeter Brune   }
10568e6d0c30SPeter Brune 
10578e6d0c30SPeter Brune   /* create sub context for SA */
1058b00a9115SJed Brown   ierr = PetscNewLog(pc,&pc_gamg_classical);CHKERRQ(ierr);
10598e6d0c30SPeter Brune   pc_gamg->subctx = pc_gamg_classical;
10608e6d0c30SPeter Brune   pc->ops->setfromoptions = PCGAMGSetFromOptions_Classical;
10618e6d0c30SPeter Brune   /* reset does not do anything; setup not virtual */
10628e6d0c30SPeter Brune 
10638e6d0c30SPeter Brune   /* set internal function pointers */
10648e6d0c30SPeter Brune   pc_gamg->ops->destroy        = PCGAMGDestroy_Classical;
10658e6d0c30SPeter Brune   pc_gamg->ops->graph          = PCGAMGGraph_Classical;
10668e6d0c30SPeter Brune   pc_gamg->ops->coarsen        = PCGAMGCoarsen_Classical;
10678eab0cc1SPeter Brune   pc_gamg->ops->prolongator    = PCGAMGProlongator_Classical;
1068fd1112cbSBarry Smith   pc_gamg->ops->optprolongator = PCGAMGOptProlongator_Classical_Jacobi;
1069586a8384SPeter Brune   pc_gamg->ops->setfromoptions = PCGAMGSetFromOptions_Classical;
10708e6d0c30SPeter Brune 
10718e6d0c30SPeter Brune   pc_gamg->ops->createdefaultdata = PCGAMGSetData_Classical;
1072586a8384SPeter Brune   pc_gamg_classical->interp_threshold = 0.2;
1073b4dc3ebdSPeter Brune   pc_gamg_classical->nsmooths         = 0;
10748eab0cc1SPeter Brune   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCGAMGClassicalSetType_C",PCGAMGClassicalSetType_GAMG);CHKERRQ(ierr);
1075c60c7ad4SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCGAMGClassicalGetType_C",PCGAMGClassicalGetType_GAMG);CHKERRQ(ierr);
10767779008dSPeter Brune   ierr = PCGAMGClassicalSetType(pc,PCGAMGCLASSICALSTANDARD);CHKERRQ(ierr);
10778e6d0c30SPeter Brune   PetscFunctionReturn(0);
10788e6d0c30SPeter Brune }
1079