15b89ad90SMark F. Adams /* 20cd22d39SHong Zhang GAMG geometric-algebric multigrid PC - Mark Adams 2011 35b89ad90SMark F. Adams */ 4af0996ceSBarry Smith #include <petsc/private/matimpl.h> 5389730f3SMark F. Adams #include <../src/ksp/pc/impls/gamg/gamg.h> /*I "petscpc.h" I*/ 6af0996ceSBarry Smith #include <petsc/private/kspimpl.h> 75b42dca8SJed Brown #include <../src/ksp/pc/impls/bjacobi/bjacobi.h> /* Hack to access same_local_solves */ 8f96513f1SMatthew G Knepley 90cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 100cbbd2e1SMark F. Adams PetscLogEvent petsc_gamg_setup_events[NUM_SET]; 11b4fbaa2aSMark F. Adams #endif 120cbbd2e1SMark F. Adams 130cbbd2e1SMark F. Adams #if defined PETSC_USE_LOG 14fd1112cbSBarry Smith PetscLogEvent PC_GAMGGraph_AGG; 15fd1112cbSBarry Smith PetscLogEvent PC_GAMGGraph_GEO; 160cbbd2e1SMark F. Adams PetscLogEvent PC_GAMGCoarsen_AGG; 170cbbd2e1SMark F. Adams PetscLogEvent PC_GAMGCoarsen_GEO; 180cbbd2e1SMark F. Adams PetscLogEvent PC_GAMGProlongator_AGG; 190cbbd2e1SMark F. Adams PetscLogEvent PC_GAMGProlongator_GEO; 20fd1112cbSBarry Smith PetscLogEvent PC_GAMGOptProlongator_AGG; 210cbbd2e1SMark F. Adams #endif 220cbbd2e1SMark F. Adams 23b4fbaa2aSMark F. Adams #define GAMG_MAXLEVELS 30 24b4fbaa2aSMark F. Adams 25b8fd24d8SMark F. Adams /* #define GAMG_STAGES */ 260cbbd2e1SMark F. Adams #if (defined PETSC_GAMG_USE_LOG && defined GAMG_STAGES) 27b4fbaa2aSMark F. Adams static PetscLogStage gamg_stages[GAMG_MAXLEVELS]; 28b4fbaa2aSMark F. Adams #endif 29f96513f1SMatthew G Knepley 30140e18c1SBarry Smith static PetscFunctionList GAMGList = 0; 313e3471ccSMark Adams static PetscBool PCGAMGPackageInitialized; 329d5b6da9SMark F. Adams 33d3d6bff4SMark F. Adams /* ----------------------------------------------------------------------------- */ 34d3d6bff4SMark F. Adams #undef __FUNCT__ 35d3d6bff4SMark F. Adams #define __FUNCT__ "PCReset_GAMG" 36d3d6bff4SMark F. Adams PetscErrorCode PCReset_GAMG(PC pc) 37d3d6bff4SMark F. Adams { 38d3d6bff4SMark F. Adams PetscErrorCode ierr; 39d3d6bff4SMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 40d3d6bff4SMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 41d3d6bff4SMark F. Adams 42d3d6bff4SMark F. Adams PetscFunctionBegin; 43a2f3521dSMark F. Adams if (pc_gamg->data) { /* this should not happen, cleaned up in SetUp */ 44ce94432eSBarry Smith PetscPrintf(PetscObjectComm((PetscObject)pc),"***[%d]%s this should not happen, cleaned up in SetUp\n",0,__FUNCT__); 459d5b6da9SMark F. Adams ierr = PetscFree(pc_gamg->data);CHKERRQ(ierr); 4658471d46SMark F. Adams } 471c1aac46SBarry Smith pc_gamg->data_sz = 0; 48878e152fSMark F. Adams ierr = PetscFree(pc_gamg->orig_data);CHKERRQ(ierr); 49a2f3521dSMark F. Adams PetscFunctionReturn(0); 50a2f3521dSMark F. Adams } 51a2f3521dSMark F. Adams 525b89ad90SMark F. Adams /* -------------------------------------------------------------------------- */ 535b89ad90SMark F. Adams /* 54c238b0ebSToby Isaac PCGAMGCreateLevel_GAMG: create coarse op with RAP. repartition and/or reduce number 55a147abb0SMark F. Adams of active processors. 565b89ad90SMark F. Adams 575b89ad90SMark F. Adams Input Parameter: 58a2f3521dSMark F. Adams . pc - parameters + side effect: coarse data in 'pc_gamg->data' and 59a2f3521dSMark F. Adams 'pc_gamg->data_sz' are changed via repartitioning/reduction. 609d5b6da9SMark F. Adams . Amat_fine - matrix on this fine (k) level 61c5bfad50SMark F. Adams . cr_bs - coarse block size 623530afc2SMark F. Adams In/Output Parameter: 63a2f3521dSMark F. Adams . a_P_inout - prolongation operator to the next level (k-->k-1) 64afc97cdcSMark F. Adams . a_nactive_proc - number of active procs 6511e60469SMark F. Adams Output Parameter: 663530afc2SMark F. Adams . a_Amat_crs - coarse matrix that is created (k-1) 675b89ad90SMark F. Adams */ 685cb416c2SMark F. Adams 695b89ad90SMark F. Adams #undef __FUNCT__ 70c238b0ebSToby Isaac #define __FUNCT__ "PCGAMGCreateLevel_GAMG" 71b34066adSToby Isaac static PetscErrorCode PCGAMGCreateLevel_GAMG(PC pc,Mat Amat_fine,PetscInt cr_bs, 723cb8563fSToby Isaac Mat *a_P_inout,Mat *a_Amat_crs,PetscMPIInt *a_nactive_proc, 733cb8563fSToby Isaac IS * Pcolumnperm) 745b89ad90SMark F. Adams { 75a2f3521dSMark F. Adams PetscErrorCode ierr; 769d5b6da9SMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 77486a8d0bSJed Brown PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 78a2f3521dSMark F. Adams Mat Cmat,Pold=*a_P_inout; 793b4367a7SBarry Smith MPI_Comm comm; 80c5df96a5SBarry Smith PetscMPIInt rank,size,new_size,nactive=*a_nactive_proc; 813ae0bb68SMark Adams PetscInt ncrs_eq,ncrs,f_bs; 825b89ad90SMark F. Adams 835b89ad90SMark F. Adams PetscFunctionBegin; 843b4367a7SBarry Smith ierr = PetscObjectGetComm((PetscObject)Amat_fine,&comm);CHKERRQ(ierr); 853b4367a7SBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 863b4367a7SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 87c5bfad50SMark F. Adams ierr = MatGetBlockSize(Amat_fine, &f_bs);CHKERRQ(ierr); 889d5b6da9SMark F. Adams ierr = MatPtAP(Amat_fine, Pold, MAT_INITIAL_MATRIX, 2.0, &Cmat);CHKERRQ(ierr); 89038e3b61SMark F. Adams 903ae0bb68SMark Adams /* set 'ncrs' (nodes), 'ncrs_eq' (equations)*/ 910298fd71SBarry Smith ierr = MatGetLocalSize(Cmat, &ncrs_eq, NULL);CHKERRQ(ierr); 923ae0bb68SMark Adams if (pc_gamg->data_cell_rows>0) { 933ae0bb68SMark Adams ncrs = pc_gamg->data_sz/pc_gamg->data_cell_cols/pc_gamg->data_cell_rows; 9473911c69SBarry Smith } else { 953ae0bb68SMark Adams PetscInt bs; 963ae0bb68SMark Adams ierr = MatGetBlockSize(Cmat, &bs);CHKERRQ(ierr); 973ae0bb68SMark Adams ncrs = ncrs_eq/bs; 983ae0bb68SMark Adams } 99a2f3521dSMark F. Adams 100c5df96a5SBarry Smith /* get number of PEs to make active 'new_size', reduce, can be any integer 1-P */ 101a2f3521dSMark F. Adams { 102472110cdSMark F. Adams PetscInt ncrs_eq_glob; 1030298fd71SBarry Smith ierr = MatGetSize(Cmat, &ncrs_eq_glob, NULL);CHKERRQ(ierr); 104a90e85d9SMark Adams new_size = (PetscMPIInt)((float)ncrs_eq_glob/(float)pc_gamg->min_eq_proc + 0.5); /* hardwire min. number of eq/proc */ 1057f66b68fSMark Adams if (!new_size) new_size = 1; /* not likely, posible? */ 106c5df96a5SBarry Smith else if (new_size >= nactive) new_size = nactive; /* no change, rare */ 107a2f3521dSMark F. Adams } 108f852f58cSMark F. Adams 1093cb8563fSToby Isaac if (Pcolumnperm) *Pcolumnperm = NULL; 1103cb8563fSToby Isaac 111a90e85d9SMark Adams if (!pc_gamg->repart && new_size==nactive) *a_Amat_crs = Cmat; /* output - no repartitioning or reduction - could bail here */ 1122fa5cd67SKarl Rupp else { 1133ae0bb68SMark Adams PetscInt *counts,*newproc_idx,ii,jj,kk,strideNew,*tidx,ncrs_new,ncrs_eq_new,nloc_old; 114885364a3SMark Adams IS is_eq_newproc,is_eq_num,is_eq_num_prim,new_eq_indices; 115e33ef3b1SMark F. Adams 11671959b99SBarry Smith nloc_old = ncrs_eq/cr_bs; 11771959b99SBarry Smith if (ncrs_eq % cr_bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"ncrs_eq %D not divisible by cr_bs %D",ncrs_eq,cr_bs); 1180cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 1190cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(petsc_gamg_setup_events[SET12],0,0,0,0);CHKERRQ(ierr); 120b4fbaa2aSMark F. Adams #endif 121a2f3521dSMark F. Adams /* make 'is_eq_newproc' */ 122785e854fSJed Brown ierr = PetscMalloc1(size, &counts);CHKERRQ(ierr); 123a90e85d9SMark Adams if (pc_gamg->repart) { 124a2f3521dSMark F. Adams /* Repartition Cmat_{k} and move colums of P^{k}_{k-1} and coordinates of primal part accordingly */ 1255a9b9e01SMark F. Adams Mat adj; 1265a9b9e01SMark F. Adams 127302440fdSBarry Smith ierr = PetscInfo3(pc,"Repartition: size (active): %D --> %D, neq = %D\n",*a_nactive_proc,new_size,ncrs_eq);CHKERRQ(ierr); 1285a9b9e01SMark F. Adams 129a2f3521dSMark F. Adams /* get 'adj' */ 130c5bfad50SMark F. Adams if (cr_bs == 1) { 131038e3b61SMark F. Adams ierr = MatConvert(Cmat, MATMPIADJ, MAT_INITIAL_MATRIX, &adj);CHKERRQ(ierr); 132806fa848SBarry Smith } else { 133a2f3521dSMark F. Adams /* make a scalar matrix to partition (no Stokes here) */ 134eb07cef2SMark F. Adams Mat tMat; 135a2f3521dSMark F. Adams PetscInt Istart_crs,Iend_crs,ncols,jj,Ii; 136b4fbaa2aSMark F. Adams const PetscScalar *vals; 137b4fbaa2aSMark F. Adams const PetscInt *idx; 138a2f3521dSMark F. Adams PetscInt *d_nnz, *o_nnz, M, N; 1399057884aSMark F. Adams static PetscInt llev = 0; 140d9558ea9SBarry Smith MatType mtype; 141b4fbaa2aSMark F. Adams 142e632b94dSBarry Smith ierr = PetscMalloc2(ncrs, &d_nnz,ncrs, &o_nnz);CHKERRQ(ierr); 143a2f3521dSMark F. Adams ierr = MatGetOwnershipRange(Cmat, &Istart_crs, &Iend_crs);CHKERRQ(ierr); 144a2f3521dSMark F. Adams ierr = MatGetSize(Cmat, &M, &N);CHKERRQ(ierr); 145c5bfad50SMark F. Adams for (Ii = Istart_crs, jj = 0; Ii < Iend_crs; Ii += cr_bs, jj++) { 14658471d46SMark F. Adams ierr = MatGetRow(Cmat,Ii,&ncols,0,0);CHKERRQ(ierr); 147c5bfad50SMark F. Adams d_nnz[jj] = ncols/cr_bs; 148c5bfad50SMark F. Adams o_nnz[jj] = ncols/cr_bs; 14958471d46SMark F. Adams ierr = MatRestoreRow(Cmat,Ii,&ncols,0,0);CHKERRQ(ierr); 1503ae0bb68SMark Adams if (d_nnz[jj] > ncrs) d_nnz[jj] = ncrs; 1513ae0bb68SMark Adams if (o_nnz[jj] > (M/cr_bs-ncrs)) o_nnz[jj] = M/cr_bs-ncrs; 15258471d46SMark F. Adams } 1536876a03eSMark F. Adams 154d9558ea9SBarry Smith ierr = MatGetType(Amat_fine,&mtype);CHKERRQ(ierr); 1553b4367a7SBarry Smith ierr = MatCreate(comm, &tMat);CHKERRQ(ierr); 1563ae0bb68SMark Adams ierr = MatSetSizes(tMat, ncrs, ncrs,PETSC_DETERMINE, PETSC_DETERMINE);CHKERRQ(ierr); 157d9558ea9SBarry Smith ierr = MatSetType(tMat,mtype);CHKERRQ(ierr); 158a2f3521dSMark F. Adams ierr = MatSeqAIJSetPreallocation(tMat,0,d_nnz);CHKERRQ(ierr); 159a2f3521dSMark F. Adams ierr = MatMPIAIJSetPreallocation(tMat,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 160e632b94dSBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 161eb07cef2SMark F. Adams 162a2f3521dSMark F. Adams for (ii = Istart_crs; ii < Iend_crs; ii++) { 163c5bfad50SMark F. Adams PetscInt dest_row = ii/cr_bs; 16422063be5SMark F. Adams ierr = MatGetRow(Cmat,ii,&ncols,&idx,&vals);CHKERRQ(ierr); 165eb07cef2SMark F. Adams for (jj = 0; jj < ncols; jj++) { 166c5bfad50SMark F. Adams PetscInt dest_col = idx[jj]/cr_bs; 167eb07cef2SMark F. Adams PetscScalar v = 1.0; 168eb07cef2SMark F. Adams ierr = MatSetValues(tMat,1,&dest_row,1,&dest_col,&v,ADD_VALUES);CHKERRQ(ierr); 169eb07cef2SMark F. Adams } 17022063be5SMark F. Adams ierr = MatRestoreRow(Cmat,ii,&ncols,&idx,&vals);CHKERRQ(ierr); 171eb07cef2SMark F. Adams } 172eb07cef2SMark F. Adams ierr = MatAssemblyBegin(tMat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 173eb07cef2SMark F. Adams ierr = MatAssemblyEnd(tMat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 174eb07cef2SMark F. Adams 175b4fbaa2aSMark F. Adams if (llev++ == -1) { 176b4fbaa2aSMark F. Adams PetscViewer viewer; char fname[32]; 1778caf3d72SBarry Smith ierr = PetscSNPrintf(fname,sizeof(fname),"part_mat_%D.mat",llev);CHKERRQ(ierr); 1783b4367a7SBarry Smith PetscViewerBinaryOpen(comm,fname,FILE_MODE_WRITE,&viewer); 179b4fbaa2aSMark F. Adams ierr = MatView(tMat, viewer);CHKERRQ(ierr); 1803bf036e2SBarry Smith ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 181b4fbaa2aSMark F. Adams } 182b4fbaa2aSMark F. Adams 183eb07cef2SMark F. Adams ierr = MatConvert(tMat, MATMPIADJ, MAT_INITIAL_MATRIX, &adj);CHKERRQ(ierr); 184eb07cef2SMark F. Adams 185eb07cef2SMark F. Adams ierr = MatDestroy(&tMat);CHKERRQ(ierr); 186a2f3521dSMark F. Adams } /* create 'adj' */ 187f150b916SMark F. Adams 188a2f3521dSMark F. Adams { /* partition: get newproc_idx */ 1895a9b9e01SMark F. Adams char prefix[256]; 1905a9b9e01SMark F. Adams const char *pcpre; 191b4fbaa2aSMark F. Adams const PetscInt *is_idx; 192b4fbaa2aSMark F. Adams MatPartitioning mpart; 193a4b7d37bSMark F. Adams IS proc_is; 194a2f3521dSMark F. Adams PetscInt targetPE; 1952f03bc48SMark F. Adams 1963b4367a7SBarry Smith ierr = MatPartitioningCreate(comm, &mpart);CHKERRQ(ierr); 1975ef31b24SMark F. Adams ierr = MatPartitioningSetAdjacency(mpart, adj);CHKERRQ(ierr); 1989d5b6da9SMark F. Adams ierr = PCGetOptionsPrefix(pc, &pcpre);CHKERRQ(ierr); 1998caf3d72SBarry Smith ierr = PetscSNPrintf(prefix,sizeof(prefix),"%spc_gamg_",pcpre ? pcpre : "");CHKERRQ(ierr); 20059a0be82SJed Brown ierr = PetscObjectSetOptionsPrefix((PetscObject)mpart,prefix);CHKERRQ(ierr); 20111e60469SMark F. Adams ierr = MatPartitioningSetFromOptions(mpart);CHKERRQ(ierr); 202c5df96a5SBarry Smith ierr = MatPartitioningSetNParts(mpart, new_size);CHKERRQ(ierr); 203a4b7d37bSMark F. Adams ierr = MatPartitioningApply(mpart, &proc_is);CHKERRQ(ierr); 20411e60469SMark F. Adams ierr = MatPartitioningDestroy(&mpart);CHKERRQ(ierr); 2055a9b9e01SMark F. Adams 2065ef31b24SMark F. Adams /* collect IS info */ 207785e854fSJed Brown ierr = PetscMalloc1(ncrs_eq, &newproc_idx);CHKERRQ(ierr); 208a4b7d37bSMark F. Adams ierr = ISGetIndices(proc_is, &is_idx);CHKERRQ(ierr); 209a2f3521dSMark F. Adams targetPE = 1; /* bring to "front" of machine */ 210c5df96a5SBarry Smith /*targetPE = size/new_size;*/ /* spread partitioning across machine */ 211a2f3521dSMark F. Adams for (kk = jj = 0 ; kk < nloc_old ; kk++) { 212c5bfad50SMark F. Adams for (ii = 0 ; ii < cr_bs ; ii++, jj++) { 213a2f3521dSMark F. Adams newproc_idx[jj] = is_idx[kk] * targetPE; /* distribution */ 214eb07cef2SMark F. Adams } 2155ef31b24SMark F. Adams } 216a4b7d37bSMark F. Adams ierr = ISRestoreIndices(proc_is, &is_idx);CHKERRQ(ierr); 217a4b7d37bSMark F. Adams ierr = ISDestroy(&proc_is);CHKERRQ(ierr); 2185ef31b24SMark F. Adams } 2195ef31b24SMark F. Adams ierr = MatDestroy(&adj);CHKERRQ(ierr); 2205a9b9e01SMark F. Adams 2213b4367a7SBarry Smith ierr = ISCreateGeneral(comm, ncrs_eq, newproc_idx, PETSC_COPY_VALUES, &is_eq_newproc);CHKERRQ(ierr); 2228263b398SMark F. Adams ierr = PetscFree(newproc_idx);CHKERRQ(ierr); 223806fa848SBarry Smith } else { /* simple aggreagtion of parts -- 'is_eq_newproc' */ 224a2f3521dSMark F. Adams 225a2f3521dSMark F. Adams PetscInt rfactor,targetPE; 2265a9b9e01SMark F. Adams /* find factor */ 227c5df96a5SBarry Smith if (new_size == 1) rfactor = size; /* easy */ 2285a9b9e01SMark F. Adams else { 2295a9b9e01SMark F. Adams PetscReal best_fact = 0.; 2305a9b9e01SMark F. Adams jj = -1; 231c5df96a5SBarry Smith for (kk = 1 ; kk <= size ; kk++) { 232*2a82295dSMark Adams if (!(size%kk)) { /* a candidate */ 233c5df96a5SBarry Smith PetscReal nactpe = (PetscReal)size/(PetscReal)kk, fact = nactpe/(PetscReal)new_size; 2345a9b9e01SMark F. Adams if (fact > 1.0) fact = 1./fact; /* keep fact < 1 */ 2355a9b9e01SMark F. Adams if (fact > best_fact) { 2365a9b9e01SMark F. Adams best_fact = fact; jj = kk; 2375a9b9e01SMark F. Adams } 2385a9b9e01SMark F. Adams } 2395a9b9e01SMark F. Adams } 2405a9b9e01SMark F. Adams if (jj != -1) rfactor = jj; 241a2f3521dSMark F. Adams else rfactor = 1; /* does this happen .. a prime */ 2425a9b9e01SMark F. Adams } 243c5df96a5SBarry Smith new_size = size/rfactor; 2445a9b9e01SMark F. Adams 245c5df96a5SBarry Smith if (new_size==nactive) { 246a2f3521dSMark F. Adams *a_Amat_crs = Cmat; /* output - no repartitioning or reduction, bail out because nested here */ 2475a9b9e01SMark F. Adams ierr = PetscFree(counts);CHKERRQ(ierr); 248302440fdSBarry Smith ierr = PetscInfo2(pc,"Aggregate processors noop: new_size=%D, neq(loc)=%D\n",new_size,ncrs_eq);CHKERRQ(ierr); 2495a9b9e01SMark F. Adams PetscFunctionReturn(0); 2505a9b9e01SMark F. Adams } 2515a9b9e01SMark F. Adams 252302440fdSBarry Smith ierr = PetscInfo1(pc,"Number of equations (loc) %D with simple aggregation\n",ncrs_eq);CHKERRQ(ierr); 253c5df96a5SBarry Smith targetPE = rank/rfactor; 2543b4367a7SBarry Smith ierr = ISCreateStride(comm, ncrs_eq, targetPE, 0, &is_eq_newproc);CHKERRQ(ierr); 255a2f3521dSMark F. Adams } /* end simple 'is_eq_newproc' */ 256e33ef3b1SMark F. Adams 25711e60469SMark F. Adams /* 258a2f3521dSMark F. Adams Create an index set from the is_eq_newproc index set to indicate the mapping TO 25911e60469SMark F. Adams */ 260a2f3521dSMark F. Adams ierr = ISPartitioningToNumbering(is_eq_newproc, &is_eq_num);CHKERRQ(ierr); 2617700e67bSMark Adams is_eq_num_prim = is_eq_num; 26211e60469SMark F. Adams /* 263a2f3521dSMark F. Adams Determine how many equations/vertices are assigned to each processor 26411e60469SMark F. Adams */ 265c5df96a5SBarry Smith ierr = ISPartitioningCount(is_eq_newproc, size, counts);CHKERRQ(ierr); 266c5df96a5SBarry Smith ncrs_eq_new = counts[rank]; 267a2f3521dSMark F. Adams ierr = ISDestroy(&is_eq_newproc);CHKERRQ(ierr); 2683ae0bb68SMark Adams ncrs_new = ncrs_eq_new/cr_bs; /* eqs */ 269a2f3521dSMark F. Adams 270a2f3521dSMark F. Adams ierr = PetscFree(counts);CHKERRQ(ierr); 2710cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 2720cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(petsc_gamg_setup_events[SET12],0,0,0,0);CHKERRQ(ierr); 273b4fbaa2aSMark F. Adams #endif 274885364a3SMark Adams /* data movement scope -- this could be moved to subclasses so that we don't try to cram all auxilary data into some complex abstracted thing */ 275885364a3SMark Adams { 276885364a3SMark Adams Vec src_crd, dest_crd; 277885364a3SMark Adams const PetscInt *idx,ndata_rows=pc_gamg->data_cell_rows,ndata_cols=pc_gamg->data_cell_cols,node_data_sz=ndata_rows*ndata_cols; 278885364a3SMark Adams VecScatter vecscat; 279885364a3SMark Adams PetscScalar *array; 280885364a3SMark Adams IS isscat; 281a2f3521dSMark F. Adams 282a2f3521dSMark F. Adams /* move data (for primal equations only) */ 28322063be5SMark F. Adams /* Create a vector to contain the newly ordered element information */ 2843b4367a7SBarry Smith ierr = VecCreate(comm, &dest_crd);CHKERRQ(ierr); 2853ae0bb68SMark Adams ierr = VecSetSizes(dest_crd, node_data_sz*ncrs_new, PETSC_DECIDE);CHKERRQ(ierr); 286c0dedaeaSBarry Smith ierr = VecSetType(dest_crd,VECSTANDARD);CHKERRQ(ierr); /* this is needed! */ 28711e60469SMark F. Adams /* 2889d5b6da9SMark F. Adams There are 'ndata_rows*ndata_cols' data items per node, (one can think of the vectors of having 289c5bfad50SMark F. Adams a block size of ...). Note, ISs are expanded into equation space by 'cr_bs'. 29011e60469SMark F. Adams */ 291854ce69bSBarry Smith ierr = PetscMalloc1(ncrs*node_data_sz, &tidx);CHKERRQ(ierr); 292a2f3521dSMark F. Adams ierr = ISGetIndices(is_eq_num_prim, &idx);CHKERRQ(ierr); 2933ae0bb68SMark Adams for (ii=0,jj=0; ii<ncrs; ii++) { 294c5bfad50SMark F. Adams PetscInt id = idx[ii*cr_bs]/cr_bs; /* get node back */ 295a2f3521dSMark F. Adams for (kk=0; kk<node_data_sz; kk++, jj++) tidx[jj] = id*node_data_sz + kk; 29611e60469SMark F. Adams } 297a2f3521dSMark F. Adams ierr = ISRestoreIndices(is_eq_num_prim, &idx);CHKERRQ(ierr); 2983ae0bb68SMark Adams ierr = ISCreateGeneral(comm, node_data_sz*ncrs, tidx, PETSC_COPY_VALUES, &isscat);CHKERRQ(ierr); 29992a756f0SMark F. Adams ierr = PetscFree(tidx);CHKERRQ(ierr); 30011e60469SMark F. Adams /* 30111e60469SMark F. Adams Create a vector to contain the original vertex information for each element 30211e60469SMark F. Adams */ 3033ae0bb68SMark Adams ierr = VecCreateSeq(PETSC_COMM_SELF, node_data_sz*ncrs, &src_crd);CHKERRQ(ierr); 3049d5b6da9SMark F. Adams for (jj=0; jj<ndata_cols; jj++) { 3053ae0bb68SMark Adams const PetscInt stride0=ncrs*pc_gamg->data_cell_rows; 3063ae0bb68SMark Adams for (ii=0; ii<ncrs; ii++) { 3079d5b6da9SMark F. Adams for (kk=0; kk<ndata_rows; kk++) { 308a2f3521dSMark F. Adams PetscInt ix = ii*ndata_rows + kk + jj*stride0, jx = ii*node_data_sz + kk*ndata_cols + jj; 309c8b0795cSMark F. Adams PetscScalar tt = (PetscScalar)pc_gamg->data[ix]; 310676e1743SMark F. Adams ierr = VecSetValues(src_crd, 1, &jx, &tt, INSERT_VALUES);CHKERRQ(ierr); 311d3d6bff4SMark F. Adams } 312038e3b61SMark F. Adams } 313eb07cef2SMark F. Adams } 314eb07cef2SMark F. Adams ierr = VecAssemblyBegin(src_crd);CHKERRQ(ierr); 315eb07cef2SMark F. Adams ierr = VecAssemblyEnd(src_crd);CHKERRQ(ierr); 31611e60469SMark F. Adams /* 31711e60469SMark F. Adams Scatter the element vertex information (still in the original vertex ordering) 31811e60469SMark F. Adams to the correct processor 31911e60469SMark F. Adams */ 3200298fd71SBarry Smith ierr = VecScatterCreate(src_crd, NULL, dest_crd, isscat, &vecscat);CHKERRQ(ierr); 32111e60469SMark F. Adams ierr = ISDestroy(&isscat);CHKERRQ(ierr); 32211e60469SMark F. Adams ierr = VecScatterBegin(vecscat,src_crd,dest_crd,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 32311e60469SMark F. Adams ierr = VecScatterEnd(vecscat,src_crd,dest_crd,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 32411e60469SMark F. Adams ierr = VecScatterDestroy(&vecscat);CHKERRQ(ierr); 32511e60469SMark F. Adams ierr = VecDestroy(&src_crd);CHKERRQ(ierr); 32611e60469SMark F. Adams /* 32711e60469SMark F. Adams Put the element vertex data into a new allocation of the gdata->ele 32811e60469SMark F. Adams */ 329c8b0795cSMark F. Adams ierr = PetscFree(pc_gamg->data);CHKERRQ(ierr); 330578f55a3SPeter Brune ierr = PetscMalloc1(node_data_sz*ncrs_new, &pc_gamg->data);CHKERRQ(ierr); 3312fa5cd67SKarl Rupp 3323ae0bb68SMark Adams pc_gamg->data_sz = node_data_sz*ncrs_new; 3333ae0bb68SMark Adams strideNew = ncrs_new*ndata_rows; 3342fa5cd67SKarl Rupp 33511e60469SMark F. Adams ierr = VecGetArray(dest_crd, &array);CHKERRQ(ierr); 3369d5b6da9SMark F. Adams for (jj=0; jj<ndata_cols; jj++) { 3373ae0bb68SMark Adams for (ii=0; ii<ncrs_new; ii++) { 3389d5b6da9SMark F. Adams for (kk=0; kk<ndata_rows; kk++) { 339a2f3521dSMark F. Adams PetscInt ix = ii*ndata_rows + kk + jj*strideNew, jx = ii*node_data_sz + kk*ndata_cols + jj; 340c8b0795cSMark F. Adams pc_gamg->data[ix] = PetscRealPart(array[jx]); 341d3d6bff4SMark F. Adams } 342038e3b61SMark F. Adams } 343038e3b61SMark F. Adams } 34411e60469SMark F. Adams ierr = VecRestoreArray(dest_crd, &array);CHKERRQ(ierr); 34511e60469SMark F. Adams ierr = VecDestroy(&dest_crd);CHKERRQ(ierr); 346885364a3SMark Adams } 347a2f3521dSMark F. Adams /* move A and P (columns) with new layout */ 3480cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 3490cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(petsc_gamg_setup_events[SET13],0,0,0,0);CHKERRQ(ierr); 350ed3f9983SMark F. Adams #endif 351a2f3521dSMark F. Adams 35211e60469SMark F. Adams /* 35311e60469SMark F. Adams Invert for MatGetSubMatrix 35411e60469SMark F. Adams */ 355a2f3521dSMark F. Adams ierr = ISInvertPermutation(is_eq_num, ncrs_eq_new, &new_eq_indices);CHKERRQ(ierr); 356a2f3521dSMark F. Adams ierr = ISSort(new_eq_indices);CHKERRQ(ierr); /* is this needed? */ 357c5bfad50SMark F. Adams ierr = ISSetBlockSize(new_eq_indices, cr_bs);CHKERRQ(ierr); 358a2f3521dSMark F. Adams if (is_eq_num != is_eq_num_prim) { 359a2f3521dSMark F. Adams ierr = ISDestroy(&is_eq_num_prim);CHKERRQ(ierr); /* could be same as 'is_eq_num' */ 360a2f3521dSMark F. Adams } 3613cb8563fSToby Isaac if (Pcolumnperm) { 3623cb8563fSToby Isaac ierr = PetscObjectReference((PetscObject)new_eq_indices);CHKERRQ(ierr); 3633cb8563fSToby Isaac *Pcolumnperm = new_eq_indices; 3643cb8563fSToby Isaac } 365a2f3521dSMark F. Adams ierr = ISDestroy(&is_eq_num);CHKERRQ(ierr); 3660cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 3670cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(petsc_gamg_setup_events[SET13],0,0,0,0);CHKERRQ(ierr); 3680cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(petsc_gamg_setup_events[SET14],0,0,0,0);CHKERRQ(ierr); 369ed3f9983SMark F. Adams #endif 370a2f3521dSMark F. Adams /* 'a_Amat_crs' output */ 371a2f3521dSMark F. Adams { 372a2f3521dSMark F. Adams Mat mat; 373806fa848SBarry Smith ierr = MatGetSubMatrix(Cmat, new_eq_indices, new_eq_indices, MAT_INITIAL_MATRIX, &mat);CHKERRQ(ierr); 374a2f3521dSMark F. Adams *a_Amat_crs = mat; 375c5bfad50SMark F. Adams 376c5bfad50SMark F. Adams if (!PETSC_TRUE) { 377c5bfad50SMark F. Adams PetscInt cbs, rbs; 378c5bfad50SMark F. Adams ierr = MatGetBlockSizes(Cmat, &rbs, &cbs);CHKERRQ(ierr); 379c5df96a5SBarry Smith ierr = PetscPrintf(MPI_COMM_SELF,"[%d]%s Old Mat rbs=%d cbs=%d\n",rank,__FUNCT__,rbs,cbs);CHKERRQ(ierr); 380c5bfad50SMark F. Adams ierr = MatGetBlockSizes(mat, &rbs, &cbs);CHKERRQ(ierr); 381c5df96a5SBarry Smith ierr = PetscPrintf(MPI_COMM_SELF,"[%d]%s New Mat rbs=%d cbs=%d cr_bs=%d\n",rank,__FUNCT__,rbs,cbs,cr_bs);CHKERRQ(ierr); 382c5bfad50SMark F. Adams } 383a2f3521dSMark F. Adams } 384038e3b61SMark F. Adams ierr = MatDestroy(&Cmat);CHKERRQ(ierr); 385a2f3521dSMark F. Adams 3860cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 3870cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(petsc_gamg_setup_events[SET14],0,0,0,0);CHKERRQ(ierr); 388ed3f9983SMark F. Adams #endif 38911e60469SMark F. Adams /* prolongator */ 39011e60469SMark F. Adams { 39111e60469SMark F. Adams IS findices; 392a2f3521dSMark F. Adams PetscInt Istart,Iend; 393a2f3521dSMark F. Adams Mat Pnew; 394a2f3521dSMark F. Adams ierr = MatGetOwnershipRange(Pold, &Istart, &Iend);CHKERRQ(ierr); 3950cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 3960cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(petsc_gamg_setup_events[SET15],0,0,0,0);CHKERRQ(ierr); 397ed3f9983SMark F. Adams #endif 3983b4367a7SBarry Smith ierr = ISCreateStride(comm,Iend-Istart,Istart,1,&findices);CHKERRQ(ierr); 399c5bfad50SMark F. Adams ierr = ISSetBlockSize(findices,f_bs);CHKERRQ(ierr); 400806fa848SBarry Smith ierr = MatGetSubMatrix(Pold, findices, new_eq_indices, MAT_INITIAL_MATRIX, &Pnew);CHKERRQ(ierr); 40111e60469SMark F. Adams ierr = ISDestroy(&findices);CHKERRQ(ierr); 402c5bfad50SMark F. Adams 403c5bfad50SMark F. Adams if (!PETSC_TRUE) { 404c5bfad50SMark F. Adams PetscInt cbs, rbs; 405c5bfad50SMark F. Adams ierr = MatGetBlockSizes(Pold, &rbs, &cbs);CHKERRQ(ierr); 406c5df96a5SBarry Smith ierr = PetscPrintf(MPI_COMM_SELF,"[%d]%s Pold rbs=%d cbs=%d\n",rank,__FUNCT__,rbs,cbs);CHKERRQ(ierr); 407c5bfad50SMark F. Adams ierr = MatGetBlockSizes(Pnew, &rbs, &cbs);CHKERRQ(ierr); 408c5df96a5SBarry Smith ierr = PetscPrintf(MPI_COMM_SELF,"[%d]%s Pnew rbs=%d cbs=%d\n",rank,__FUNCT__,rbs,cbs);CHKERRQ(ierr); 409c5bfad50SMark F. Adams } 4100cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 4110cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(petsc_gamg_setup_events[SET15],0,0,0,0);CHKERRQ(ierr); 412ed3f9983SMark F. Adams #endif 4133530afc2SMark F. Adams ierr = MatDestroy(a_P_inout);CHKERRQ(ierr); 414a2f3521dSMark F. Adams 415a2f3521dSMark F. Adams /* output - repartitioned */ 416a2f3521dSMark F. Adams *a_P_inout = Pnew; 417e33ef3b1SMark F. Adams } 418a2f3521dSMark F. Adams ierr = ISDestroy(&new_eq_indices);CHKERRQ(ierr); 4195b89ad90SMark F. Adams 420c5df96a5SBarry Smith *a_nactive_proc = new_size; /* output */ 421a2f3521dSMark F. Adams } 4225a9b9e01SMark F. Adams 423a2f3521dSMark F. Adams /* outout matrix data */ 424c8b0795cSMark F. Adams if (!PETSC_TRUE) { 425c8b0795cSMark F. Adams PetscViewer viewer; char fname[32]; static int llev=0; Cmat = *a_Amat_crs; 4267f66b68fSMark Adams if (!llev) { 427c8b0795cSMark F. Adams sprintf(fname,"Cmat_%d.m",llev++); 4283b4367a7SBarry Smith PetscViewerASCIIOpen(comm,fname,&viewer); 429c8b0795cSMark F. Adams ierr = PetscViewerSetFormat(viewer, PETSC_VIEWER_ASCII_MATLAB);CHKERRQ(ierr); 430c8b0795cSMark F. Adams ierr = MatView(Amat_fine, viewer);CHKERRQ(ierr); 431c8b0795cSMark F. Adams ierr = PetscViewerDestroy(&viewer); 432c8b0795cSMark F. Adams } 433c8b0795cSMark F. Adams sprintf(fname,"Cmat_%d.m",llev++); 4343b4367a7SBarry Smith PetscViewerASCIIOpen(comm,fname,&viewer); 435c8b0795cSMark F. Adams ierr = PetscViewerSetFormat(viewer, PETSC_VIEWER_ASCII_MATLAB);CHKERRQ(ierr); 436c8b0795cSMark F. Adams ierr = MatView(Cmat, viewer);CHKERRQ(ierr); 437c8b0795cSMark F. Adams ierr = PetscViewerDestroy(&viewer); 438c8b0795cSMark F. Adams } 4395b89ad90SMark F. Adams PetscFunctionReturn(0); 4405b89ad90SMark F. Adams } 4415b89ad90SMark F. Adams 4425b89ad90SMark F. Adams /* -------------------------------------------------------------------------- */ 4435b89ad90SMark F. Adams /* 4445b89ad90SMark F. Adams PCSetUp_GAMG - Prepares for the use of the GAMG preconditioner 4455b89ad90SMark F. Adams by setting data structures and options. 4465b89ad90SMark F. Adams 4475b89ad90SMark F. Adams Input Parameter: 4485b89ad90SMark F. Adams . pc - the preconditioner context 4495b89ad90SMark F. Adams 4505b89ad90SMark F. Adams */ 4515b89ad90SMark F. Adams #undef __FUNCT__ 4525b89ad90SMark F. Adams #define __FUNCT__ "PCSetUp_GAMG" 4539d5b6da9SMark F. Adams PetscErrorCode PCSetUp_GAMG(PC pc) 4545b89ad90SMark F. Adams { 4555b89ad90SMark F. Adams PetscErrorCode ierr; 4569d5b6da9SMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 4575b89ad90SMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 4582adcac29SMark F. Adams Mat Pmat = pc->pmat; 459a2f3521dSMark F. Adams PetscInt fine_level,level,level1,bs,M,qq,lidx,nASMBlocksArr[GAMG_MAXLEVELS]; 4603b4367a7SBarry Smith MPI_Comm comm; 461c5df96a5SBarry Smith PetscMPIInt rank,size,nactivepe; 462587fa25dSMark F. Adams Mat Aarr[GAMG_MAXLEVELS],Parr[GAMG_MAXLEVELS]; 463e696ed0bSMark F. Adams IS *ASMLocalIDsArr[GAMG_MAXLEVELS]; 464a2f3521dSMark F. Adams PetscLogDouble nnz0=0.,nnztot=0.; 465569f4572SMark Adams MatInfo info; 4665ef31b24SMark F. Adams 4675b89ad90SMark F. Adams PetscFunctionBegin; 4683b4367a7SBarry Smith ierr = PetscObjectGetComm((PetscObject)pc,&comm);CHKERRQ(ierr); 4693b4367a7SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 4703b4367a7SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 471dfd5c07aSMark F. Adams 47284d3f75bSMark F. Adams if (pc_gamg->setup_count++ > 0) { 4731c1aac46SBarry Smith if ((PetscBool)(!pc_gamg->reuse_prol)) { 474878e152fSMark F. Adams /* reset everything */ 475878e152fSMark F. Adams ierr = PCReset_MG(pc);CHKERRQ(ierr); 476878e152fSMark F. Adams pc->setupcalled = 0; 477806fa848SBarry Smith } else { 47884d3f75bSMark F. Adams PC_MG_Levels **mglevels = mg->levels; 47903a628feSMark F. Adams /* just do Galerkin grids */ 48058471d46SMark F. Adams Mat B,dA,dB; 48158471d46SMark F. Adams 48271959b99SBarry Smith if (!pc->setupcalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"PCSetUp() has not been called yet"); 4839d5b6da9SMark F. Adams if (pc_gamg->Nlevels > 1) { 48458471d46SMark F. Adams /* currently only handle case where mat and pmat are the same on coarser levels */ 48523ee1639SBarry Smith ierr = KSPGetOperators(mglevels[pc_gamg->Nlevels-1]->smoothd,&dA,&dB);CHKERRQ(ierr); 48658471d46SMark F. Adams /* (re)set to get dirty flag */ 48723ee1639SBarry Smith ierr = KSPSetOperators(mglevels[pc_gamg->Nlevels-1]->smoothd,dA,dB);CHKERRQ(ierr); 48858471d46SMark F. Adams 4892fb0b348SMark F. Adams for (level=pc_gamg->Nlevels-2; level>=0; level--) { 49003a628feSMark F. Adams /* the first time through the matrix structure has changed from repartitioning */ 4910a97e771SToby Isaac if (pc_gamg->setup_count==2) { 49203a628feSMark F. Adams ierr = MatPtAP(dB,mglevels[level+1]->interpolate,MAT_INITIAL_MATRIX,1.0,&B);CHKERRQ(ierr); 493084a8fe3SJed Brown ierr = MatDestroy(&mglevels[level]->A);CHKERRQ(ierr); 4942fa5cd67SKarl Rupp 49503a628feSMark F. Adams mglevels[level]->A = B; 496806fa848SBarry Smith } else { 49723ee1639SBarry Smith ierr = KSPGetOperators(mglevels[level]->smoothd,NULL,&B);CHKERRQ(ierr); 49858471d46SMark F. Adams ierr = MatPtAP(dB,mglevels[level+1]->interpolate,MAT_REUSE_MATRIX,1.0,&B);CHKERRQ(ierr); 49903a628feSMark F. Adams } 50023ee1639SBarry Smith ierr = KSPSetOperators(mglevels[level]->smoothd,B,B);CHKERRQ(ierr); 50158471d46SMark F. Adams dB = B; 50258471d46SMark F. Adams } 5035f8cf99dSMark F. Adams } 504d5280255SMark F. Adams 505d5280255SMark F. Adams ierr = PCSetUp_MG(pc);CHKERRQ(ierr); 506d5280255SMark F. Adams 50758471d46SMark F. Adams PetscFunctionReturn(0); 508eb07cef2SMark F. Adams } 509878e152fSMark F. Adams } 510f6536408SMark F. Adams 511878e152fSMark F. Adams if (!pc_gamg->data) { 512878e152fSMark F. Adams if (pc_gamg->orig_data) { 513878e152fSMark F. Adams ierr = MatGetBlockSize(Pmat, &bs);CHKERRQ(ierr); 5140298fd71SBarry Smith ierr = MatGetLocalSize(Pmat, &qq, NULL);CHKERRQ(ierr); 5152fa5cd67SKarl Rupp 516878e152fSMark F. Adams pc_gamg->data_sz = (qq/bs)*pc_gamg->orig_data_cell_rows*pc_gamg->orig_data_cell_cols; 517878e152fSMark F. Adams pc_gamg->data_cell_rows = pc_gamg->orig_data_cell_rows; 518878e152fSMark F. Adams pc_gamg->data_cell_cols = pc_gamg->orig_data_cell_cols; 5192fa5cd67SKarl Rupp 520785e854fSJed Brown ierr = PetscMalloc1(pc_gamg->data_sz, &pc_gamg->data);CHKERRQ(ierr); 521878e152fSMark F. Adams for (qq=0; qq<pc_gamg->data_sz; qq++) pc_gamg->data[qq] = pc_gamg->orig_data[qq]; 522806fa848SBarry Smith } else { 5231ab5ffc9SJed Brown if (!pc_gamg->ops->createdefaultdata) SETERRQ(comm,PETSC_ERR_PLIB,"'createdefaultdata' not set(?) need to support NULL data"); 5247700e67bSMark Adams ierr = pc_gamg->ops->createdefaultdata(pc,Pmat);CHKERRQ(ierr); 5259d5b6da9SMark F. Adams } 526878e152fSMark F. Adams } 527878e152fSMark F. Adams 528878e152fSMark F. Adams /* cache original data for reuse */ 5291c1aac46SBarry Smith if (!pc_gamg->orig_data && (PetscBool)(!pc_gamg->reuse_prol)) { 530785e854fSJed Brown ierr = PetscMalloc1(pc_gamg->data_sz, &pc_gamg->orig_data);CHKERRQ(ierr); 531878e152fSMark F. Adams for (qq=0; qq<pc_gamg->data_sz; qq++) pc_gamg->orig_data[qq] = pc_gamg->data[qq]; 532878e152fSMark F. Adams pc_gamg->orig_data_cell_rows = pc_gamg->data_cell_rows; 533878e152fSMark F. Adams pc_gamg->orig_data_cell_cols = pc_gamg->data_cell_cols; 534878e152fSMark F. Adams } 535038e3b61SMark F. Adams 536302f38e8SMark F. Adams /* get basic dims */ 537302f38e8SMark F. Adams ierr = MatGetBlockSize(Pmat, &bs);CHKERRQ(ierr); 538a2f3521dSMark F. Adams ierr = MatGetSize(Pmat, &M, &qq);CHKERRQ(ierr); 53984d3f75bSMark F. Adams 540569f4572SMark Adams ierr = MatGetInfo(Pmat,MAT_GLOBAL_SUM,&info);CHKERRQ(ierr); /* global reduction */ 541569f4572SMark Adams nnz0 = info.nz_used; 542569f4572SMark Adams nnztot = info.nz_used; 5431d5b2942SMark Adams ierr = PetscInfo6(pc,"level %d) N=%D, n data rows=%d, n data cols=%d, nnz/row (ave)=%d, np=%d\n", 544569f4572SMark Adams 0,M,pc_gamg->data_cell_rows,pc_gamg->data_cell_cols, 545569f4572SMark Adams (int)(nnz0/(PetscReal)M+0.5),size); 546569f4572SMark Adams CHKERRQ(ierr); 547569f4572SMark Adams 548a2f3521dSMark F. Adams /* Get A_i and R_i */ 549c5df96a5SBarry Smith for (level=0, Aarr[0]=Pmat, nactivepe = size; /* hard wired stopping logic */ 5507f66b68fSMark Adams level < (pc_gamg->Nlevels-1) && (!level || M>pc_gamg->coarse_eq_limit); 5510205a208SMark F. Adams level++) { 5529ab59c8bSMark Adams pc_gamg->current_level = level; 5535b89ad90SMark F. Adams level1 = level + 1; 5540cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 5550cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(petsc_gamg_setup_events[SET1],0,0,0,0);CHKERRQ(ierr); 556a2f3521dSMark F. Adams #if (defined GAMG_STAGES) 557a2f3521dSMark F. Adams ierr = PetscLogStagePush(gamg_stages[level]);CHKERRQ(ierr); 558b4fbaa2aSMark F. Adams #endif 559a2f3521dSMark F. Adams #endif 560c8b0795cSMark F. Adams { /* construct prolongator */ 561725b86d8SJed Brown Mat Gmat; 5620cbbd2e1SMark F. Adams PetscCoarsenData *agg_lists; 5637700e67bSMark Adams Mat Prol11; 564c8b0795cSMark F. Adams 5657700e67bSMark Adams ierr = pc_gamg->ops->graph(pc,Aarr[level], &Gmat);CHKERRQ(ierr); 5661ab5ffc9SJed Brown ierr = pc_gamg->ops->coarsen(pc, &Gmat, &agg_lists);CHKERRQ(ierr); 5677700e67bSMark Adams ierr = pc_gamg->ops->prolongator(pc,Aarr[level],Gmat,agg_lists,&Prol11);CHKERRQ(ierr); 568c8b0795cSMark F. Adams 569a2f3521dSMark F. Adams /* could have failed to create new level */ 570a2f3521dSMark F. Adams if (Prol11) { 5719d5b6da9SMark F. Adams /* get new block size of coarse matrices */ 5720298fd71SBarry Smith ierr = MatGetBlockSizes(Prol11, NULL, &bs);CHKERRQ(ierr); 573a2f3521dSMark F. Adams 574fd1112cbSBarry Smith if (pc_gamg->ops->optprolongator) { 575c8b0795cSMark F. Adams /* smooth */ 576fd1112cbSBarry Smith ierr = pc_gamg->ops->optprolongator(pc, Aarr[level], &Prol11);CHKERRQ(ierr); 577c8b0795cSMark F. Adams } 578c8b0795cSMark F. Adams 5797700e67bSMark Adams Parr[level1] = Prol11; 5800298fd71SBarry Smith } else Parr[level1] = NULL; 581ffc955d6SMark F. Adams 582ffc955d6SMark F. Adams if (pc_gamg->use_aggs_in_gasm) { 5831b18a24aSMark Adams PetscInt bs; 5841b18a24aSMark Adams ierr = MatGetBlockSizes(Prol11, &bs, NULL);CHKERRQ(ierr); 585806fa848SBarry Smith ierr = PetscCDGetASMBlocks(agg_lists, bs, &nASMBlocksArr[level], &ASMLocalIDsArr[level]);CHKERRQ(ierr); 586ffc955d6SMark F. Adams } 587ffc955d6SMark F. Adams 588a2f3521dSMark F. Adams ierr = MatDestroy(&Gmat);CHKERRQ(ierr); 58941b27cdeSMark F. Adams ierr = PetscCDDestroy(agg_lists);CHKERRQ(ierr); 590a2f3521dSMark F. Adams } /* construct prolongator scope */ 5910cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 5920cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(petsc_gamg_setup_events[SET1],0,0,0,0);CHKERRQ(ierr); 593c8b0795cSMark F. Adams #endif 5947f66b68fSMark Adams if (!level) Aarr[0] = Pmat; /* use Pmat for finest level setup */ 595c8b0795cSMark F. Adams if (!Parr[level1]) { 596569f4572SMark Adams ierr = PetscInfo1(pc,"Stop gridding, level %D\n",level);CHKERRQ(ierr); 597a90e85d9SMark Adams #if (defined PETSC_GAMG_USE_LOG && defined GAMG_STAGES) 598a90e85d9SMark Adams ierr = PetscLogStagePop();CHKERRQ(ierr); 599a90e85d9SMark Adams #endif 600c8b0795cSMark F. Adams break; 601c8b0795cSMark F. Adams } 6020cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 6030cbbd2e1SMark F. Adams ierr = PetscLogEventBegin(petsc_gamg_setup_events[SET2],0,0,0,0);CHKERRQ(ierr); 604b4fbaa2aSMark F. Adams #endif 605a2f3521dSMark F. Adams 6061c1aac46SBarry Smith ierr = pc_gamg->ops->createlevel(pc, Aarr[level], bs,&Parr[level1], &Aarr[level1], &nactivepe, NULL);CHKERRQ(ierr); 607a2f3521dSMark F. Adams 6080cbbd2e1SMark F. Adams #if defined PETSC_GAMG_USE_LOG 6090cbbd2e1SMark F. Adams ierr = PetscLogEventEnd(petsc_gamg_setup_events[SET2],0,0,0,0);CHKERRQ(ierr); 610b4fbaa2aSMark F. Adams #endif 611a2f3521dSMark F. Adams ierr = MatGetSize(Aarr[level1], &M, &qq);CHKERRQ(ierr); 612569f4572SMark Adams 613569f4572SMark Adams ierr = MatGetInfo(Aarr[level1], MAT_GLOBAL_SUM, &info);CHKERRQ(ierr); 614569f4572SMark Adams nnztot += info.nz_used; 6151d5b2942SMark Adams ierr = PetscInfo5(pc,"%d) N=%D, n data cols=%d, nnz/row (ave)=%d, %d active pes\n",level1,M,pc_gamg->data_cell_cols,(int)(info.nz_used/(PetscReal)M),nactivepe);CHKERRQ(ierr); 616569f4572SMark Adams 6170cbbd2e1SMark F. Adams #if (defined PETSC_GAMG_USE_LOG && defined GAMG_STAGES) 618b4fbaa2aSMark F. Adams ierr = PetscLogStagePop();CHKERRQ(ierr); 619b4fbaa2aSMark F. Adams #endif 620a90e85d9SMark Adams /* stop if one node or one proc -- could pull back for singular problems */ 6219ab59c8bSMark Adams if ( (pc_gamg->data_cell_cols && M/pc_gamg->data_cell_cols < 2) || (!pc_gamg->data_cell_cols && M/bs < 2) ) { 6229ab59c8bSMark Adams ierr = PetscInfo2(pc,"HARD stop of coarsening on level %D. Grid too small: %D block nodes\n",level,M/bs);CHKERRQ(ierr); 623a90e85d9SMark Adams level++; 624a90e85d9SMark Adams break; 625a90e85d9SMark Adams } 626c8b0795cSMark F. Adams } /* levels */ 627c8b0795cSMark F. Adams ierr = PetscFree(pc_gamg->data);CHKERRQ(ierr); 628c8b0795cSMark F. Adams 629569f4572SMark Adams ierr = PetscInfo2(pc,"%D levels, grid complexity = %g\n",level+1,nnztot/nnz0);CHKERRQ(ierr); 6309d5b6da9SMark F. Adams pc_gamg->Nlevels = level + 1; 6315b89ad90SMark F. Adams fine_level = level; 6320298fd71SBarry Smith ierr = PCMGSetLevels(pc,pc_gamg->Nlevels,NULL);CHKERRQ(ierr); 6335b89ad90SMark F. Adams 63484d3f75bSMark F. Adams /* simple setup */ 63584d3f75bSMark F. Adams if (!PETSC_TRUE) { 63684d3f75bSMark F. Adams PC_MG_Levels **mglevels = mg->levels; 63784d3f75bSMark F. Adams for (lidx=0,level=pc_gamg->Nlevels-1; 63884d3f75bSMark F. Adams lidx<fine_level; 63984d3f75bSMark F. Adams lidx++, level--) { 64084d3f75bSMark F. Adams ierr = PCMGSetInterpolation(pc, lidx+1, Parr[level]);CHKERRQ(ierr); 64123ee1639SBarry Smith ierr = KSPSetOperators(mglevels[lidx]->smoothd, Aarr[level], Aarr[level]);CHKERRQ(ierr); 64284d3f75bSMark F. Adams ierr = MatDestroy(&Parr[level]);CHKERRQ(ierr); 64384d3f75bSMark F. Adams ierr = MatDestroy(&Aarr[level]);CHKERRQ(ierr); 64484d3f75bSMark F. Adams } 64523ee1639SBarry Smith ierr = KSPSetOperators(mglevels[fine_level]->smoothd, Aarr[0], Aarr[0]);CHKERRQ(ierr); 64684d3f75bSMark F. Adams 64784d3f75bSMark F. Adams ierr = PCSetUp_MG(pc);CHKERRQ(ierr); 648806fa848SBarry Smith } else if (pc_gamg->Nlevels > 1) { /* don't setup MG if one level */ 649d5280255SMark F. Adams /* set default smoothers & set operators */ 6509d5b6da9SMark F. Adams for (lidx = 1, level = pc_gamg->Nlevels-2; 651587fa25dSMark F. Adams lidx <= fine_level; 652587fa25dSMark F. Adams lidx++, level--) { 653ffc955d6SMark F. Adams KSP smoother; 654ffc955d6SMark F. Adams PC subpc; 655a2f3521dSMark F. Adams 6569d5b6da9SMark F. Adams ierr = PCMGGetSmoother(pc, lidx, &smoother);CHKERRQ(ierr); 657f6536408SMark F. Adams ierr = KSPGetPC(smoother, &subpc);CHKERRQ(ierr); 658ffc955d6SMark F. Adams 659a2f3521dSMark F. Adams ierr = KSPSetNormType(smoother, KSP_NORM_NONE);CHKERRQ(ierr); 660a2f3521dSMark F. Adams /* set ops */ 66123ee1639SBarry Smith ierr = KSPSetOperators(smoother, Aarr[level], Aarr[level]);CHKERRQ(ierr); 662a2f3521dSMark F. Adams ierr = PCMGSetInterpolation(pc, lidx, Parr[level+1]);CHKERRQ(ierr); 663a2f3521dSMark F. Adams 664a2f3521dSMark F. Adams /* set defaults */ 6656c9de887SHong Zhang ierr = KSPSetType(smoother, KSPCHEBYSHEV);CHKERRQ(ierr); 666a2f3521dSMark F. Adams 6671b18a24aSMark Adams /* set blocks for GASM smoother that uses the 'aggregates' */ 668ffc955d6SMark F. Adams if (pc_gamg->use_aggs_in_gasm) { 6692d3561bbSSatish Balay PetscInt sz; 6702d3561bbSSatish Balay IS *is; 671a2f3521dSMark F. Adams 6722d3561bbSSatish Balay sz = nASMBlocksArr[level]; 6732d3561bbSSatish Balay is = ASMLocalIDsArr[level]; 674ffc955d6SMark F. Adams ierr = PCSetType(subpc, PCGASM);CHKERRQ(ierr); 6751b18a24aSMark Adams ierr = PCGASMSetOverlap(subpc, 0);CHKERRQ(ierr); 6767f66b68fSMark Adams if (!sz) { 677ffc955d6SMark F. Adams IS is; 678ffc955d6SMark F. Adams PetscInt my0,kk; 679ffc955d6SMark F. Adams ierr = MatGetOwnershipRange(Aarr[level], &my0, &kk);CHKERRQ(ierr); 680ffc955d6SMark F. Adams ierr = ISCreateGeneral(PETSC_COMM_SELF, 1, &my0, PETSC_COPY_VALUES, &is);CHKERRQ(ierr); 6810298fd71SBarry Smith ierr = PCGASMSetSubdomains(subpc, 1, &is, NULL);CHKERRQ(ierr); 682a94c3b12SMark F. Adams ierr = ISDestroy(&is);CHKERRQ(ierr); 683806fa848SBarry Smith } else { 684a94c3b12SMark F. Adams PetscInt kk; 6850298fd71SBarry Smith ierr = PCGASMSetSubdomains(subpc, sz, is, NULL);CHKERRQ(ierr); 686a94c3b12SMark F. Adams for (kk=0; kk<sz; kk++) { 687a94c3b12SMark F. Adams ierr = ISDestroy(&is[kk]);CHKERRQ(ierr); 688a94c3b12SMark F. Adams } 689ffc955d6SMark F. Adams ierr = PetscFree(is);CHKERRQ(ierr); 690ffc955d6SMark F. Adams } 6910298fd71SBarry Smith ASMLocalIDsArr[level] = NULL; 692ffc955d6SMark F. Adams nASMBlocksArr[level] = 0; 693ffc955d6SMark F. Adams ierr = PCGASMSetType(subpc, PC_GASM_BASIC);CHKERRQ(ierr); 694806fa848SBarry Smith } else { 695890ffe84SMark Adams ierr = PCSetType(subpc, PCSOR);CHKERRQ(ierr); 696ffc955d6SMark F. Adams } 697d5280255SMark F. Adams } 698d5280255SMark F. Adams { 699d5280255SMark F. Adams /* coarse grid */ 700d5280255SMark F. Adams KSP smoother,*k2; PC subpc,pc2; PetscInt ii,first; 701d5280255SMark F. Adams Mat Lmat = Aarr[(level=pc_gamg->Nlevels-1)]; lidx = 0; 702d5280255SMark F. Adams ierr = PCMGGetSmoother(pc, lidx, &smoother);CHKERRQ(ierr); 70323ee1639SBarry Smith ierr = KSPSetOperators(smoother, Lmat, Lmat);CHKERRQ(ierr); 704d5280255SMark F. Adams ierr = KSPSetNormType(smoother, KSP_NORM_NONE);CHKERRQ(ierr); 705d5280255SMark F. Adams ierr = KSPGetPC(smoother, &subpc);CHKERRQ(ierr); 706d5280255SMark F. Adams ierr = PCSetType(subpc, PCBJACOBI);CHKERRQ(ierr); 707d5280255SMark F. Adams ierr = PCSetUp(subpc);CHKERRQ(ierr); 70871959b99SBarry Smith ierr = PCBJacobiGetSubKSP(subpc,&ii,&first,&k2);CHKERRQ(ierr); 70971959b99SBarry Smith if (ii != 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"ii %D is not one",ii); 710d5280255SMark F. Adams ierr = KSPGetPC(k2[0],&pc2);CHKERRQ(ierr); 711d5280255SMark F. Adams ierr = PCSetType(pc2, PCLU);CHKERRQ(ierr); 7129dbfc187SHong Zhang ierr = PCFactorSetShiftType(pc2,MAT_SHIFT_INBLOCKS);CHKERRQ(ierr); 7132fb0b348SMark F. Adams ierr = KSPSetTolerances(k2[0],PETSC_DEFAULT,PETSC_DEFAULT,PETSC_DEFAULT,1);CHKERRQ(ierr); 71408e36f19SMark Adams ierr = KSPSetType(k2[0], KSPPREONLY);CHKERRQ(ierr); 7155b42dca8SJed Brown /* This flag gets reset by PCBJacobiGetSubKSP(), but our BJacobi really does the same algorithm everywhere (and in 7165b42dca8SJed Brown * fact, all but one process will have zero dofs), so we reset the flag to avoid having PCView_BJacobi attempt to 7175b42dca8SJed Brown * view every subdomain as though they were different. */ 7185b42dca8SJed Brown ((PC_BJacobi*)subpc->data)->same_local_solves = PETSC_TRUE; 719d5280255SMark F. Adams } 720d5280255SMark F. Adams 721d5280255SMark F. Adams /* should be called in PCSetFromOptions_GAMG(), but cannot be called prior to PCMGSetLevels() */ 722d5280255SMark F. Adams ierr = PetscObjectOptionsBegin((PetscObject)pc);CHKERRQ(ierr); 723e55864a3SBarry Smith ierr = PCSetFromOptions_MG(PetscOptionsObject,pc);CHKERRQ(ierr); 724d5280255SMark F. Adams ierr = PetscOptionsEnd();CHKERRQ(ierr); 7251c1aac46SBarry Smith if (!mg->galerkin) SETERRQ(comm,PETSC_ERR_USER,"PCGAMG must use Galerkin for coarse operators."); 7261c1aac46SBarry Smith if (mg->galerkin == 1) mg->galerkin = 2; 727d5280255SMark F. Adams 728d5280255SMark F. Adams /* clean up */ 729d5280255SMark F. Adams for (level=1; level<pc_gamg->Nlevels; level++) { 730587fa25dSMark F. Adams ierr = MatDestroy(&Parr[level]);CHKERRQ(ierr); 731587fa25dSMark F. Adams ierr = MatDestroy(&Aarr[level]);CHKERRQ(ierr); 7325b89ad90SMark F. Adams } 7330cbbd2e1SMark F. Adams 7340cbbd2e1SMark F. Adams ierr = PCSetUp_MG(pc);CHKERRQ(ierr); 735806fa848SBarry Smith } else { 7365f8cf99dSMark F. Adams KSP smoother; 737302440fdSBarry Smith ierr = PetscInfo(pc,"One level solver used (system is seen as DD). Using default solver.\n");CHKERRQ(ierr); 7389d5b6da9SMark F. Adams ierr = PCMGGetSmoother(pc, 0, &smoother);CHKERRQ(ierr); 73923ee1639SBarry Smith ierr = KSPSetOperators(smoother, Aarr[0], Aarr[0]);CHKERRQ(ierr); 7405f8cf99dSMark F. Adams ierr = KSPSetType(smoother, KSPPREONLY);CHKERRQ(ierr); 7419d5b6da9SMark F. Adams ierr = PCSetUp_MG(pc);CHKERRQ(ierr); 7425f8cf99dSMark F. Adams } 7435b89ad90SMark F. Adams PetscFunctionReturn(0); 7445b89ad90SMark F. Adams } 7455b89ad90SMark F. Adams 746eb07cef2SMark F. Adams /* ------------------------------------------------------------------------- */ 7475b89ad90SMark F. Adams /* 7485b89ad90SMark F. Adams PCDestroy_GAMG - Destroys the private context for the GAMG preconditioner 7495b89ad90SMark F. Adams that was created with PCCreate_GAMG(). 7505b89ad90SMark F. Adams 7515b89ad90SMark F. Adams Input Parameter: 7525b89ad90SMark F. Adams . pc - the preconditioner context 7535b89ad90SMark F. Adams 7545b89ad90SMark F. Adams Application Interface Routine: PCDestroy() 7555b89ad90SMark F. Adams */ 7565b89ad90SMark F. Adams #undef __FUNCT__ 7575b89ad90SMark F. Adams #define __FUNCT__ "PCDestroy_GAMG" 7585b89ad90SMark F. Adams PetscErrorCode PCDestroy_GAMG(PC pc) 7595b89ad90SMark F. Adams { 7605b89ad90SMark F. Adams PetscErrorCode ierr; 7615b89ad90SMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 7625b89ad90SMark F. Adams PC_GAMG *pc_gamg= (PC_GAMG*)mg->innerctx; 7635b89ad90SMark F. Adams 7645b89ad90SMark F. Adams PetscFunctionBegin; 7655b89ad90SMark F. Adams ierr = PCReset_GAMG(pc);CHKERRQ(ierr); 7669b8ffb57SJed Brown if (pc_gamg->ops->destroy) { 7679b8ffb57SJed Brown ierr = (*pc_gamg->ops->destroy)(pc);CHKERRQ(ierr); 7689b8ffb57SJed Brown } 7691ab5ffc9SJed Brown ierr = PetscFree(pc_gamg->ops);CHKERRQ(ierr); 7701ab5ffc9SJed Brown ierr = PetscFree(pc_gamg->gamg_type_name);CHKERRQ(ierr); 7715b89ad90SMark F. Adams ierr = PetscFree(pc_gamg);CHKERRQ(ierr); 7725b89ad90SMark F. Adams ierr = PCDestroy_MG(pc);CHKERRQ(ierr); 7735b89ad90SMark F. Adams PetscFunctionReturn(0); 7745b89ad90SMark F. Adams } 7755b89ad90SMark F. Adams 776676e1743SMark F. Adams 777676e1743SMark F. Adams #undef __FUNCT__ 778676e1743SMark F. Adams #define __FUNCT__ "PCGAMGSetProcEqLim" 779676e1743SMark F. Adams /*@ 7801cc46a46SBarry Smith PCGAMGSetProcEqLim - Set number of equations to aim for on coarse grids via processor reduction. 781676e1743SMark F. Adams 7821cc46a46SBarry Smith Logically Collective on PC 783676e1743SMark F. Adams 784676e1743SMark F. Adams Input Parameters: 7851cc46a46SBarry Smith + pc - the preconditioner context 7861cc46a46SBarry Smith - n - the number of equations 787676e1743SMark F. Adams 788676e1743SMark F. Adams 789676e1743SMark F. Adams Options Database Key: 7901cc46a46SBarry Smith . -pc_gamg_process_eq_limit <limit> 791676e1743SMark F. Adams 792676e1743SMark F. Adams Level: intermediate 793676e1743SMark F. Adams 7941c1aac46SBarry Smith Concepts: Unstructured multigrid preconditioner 795676e1743SMark F. Adams 7961c1aac46SBarry Smith .seealso: PCGAMGSetCoarseEqLim() 797676e1743SMark F. Adams @*/ 798676e1743SMark F. Adams PetscErrorCode PCGAMGSetProcEqLim(PC pc, PetscInt n) 799676e1743SMark F. Adams { 800676e1743SMark F. Adams PetscErrorCode ierr; 801676e1743SMark F. Adams 802676e1743SMark F. Adams PetscFunctionBegin; 803676e1743SMark F. Adams PetscValidHeaderSpecific(pc,PC_CLASSID,1); 804676e1743SMark F. Adams ierr = PetscTryMethod(pc,"PCGAMGSetProcEqLim_C",(PC,PetscInt),(pc,n));CHKERRQ(ierr); 805676e1743SMark F. Adams PetscFunctionReturn(0); 806676e1743SMark F. Adams } 807676e1743SMark F. Adams 808676e1743SMark F. Adams #undef __FUNCT__ 809676e1743SMark F. Adams #define __FUNCT__ "PCGAMGSetProcEqLim_GAMG" 8101e6b0712SBarry Smith static PetscErrorCode PCGAMGSetProcEqLim_GAMG(PC pc, PetscInt n) 811676e1743SMark F. Adams { 812c20e4228SMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 813c20e4228SMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 814676e1743SMark F. Adams 815676e1743SMark F. Adams PetscFunctionBegin; 8169d5b6da9SMark F. Adams if (n>0) pc_gamg->min_eq_proc = n; 817676e1743SMark F. Adams PetscFunctionReturn(0); 818676e1743SMark F. Adams } 819676e1743SMark F. Adams 820676e1743SMark F. Adams #undef __FUNCT__ 821389730f3SMark F. Adams #define __FUNCT__ "PCGAMGSetCoarseEqLim" 822389730f3SMark F. Adams /*@ 823389730f3SMark F. Adams PCGAMGSetCoarseEqLim - Set max number of equations on coarse grids. 824389730f3SMark F. Adams 825389730f3SMark F. Adams Collective on PC 826389730f3SMark F. Adams 827389730f3SMark F. Adams Input Parameters: 8281cc46a46SBarry Smith + pc - the preconditioner context 8291cc46a46SBarry Smith - n - maximum number of equations to aim for 830389730f3SMark F. Adams 831389730f3SMark F. Adams Options Database Key: 8321cc46a46SBarry Smith . -pc_gamg_coarse_eq_limit <limit> 833389730f3SMark F. Adams 834389730f3SMark F. Adams Level: intermediate 835389730f3SMark F. Adams 8361c1aac46SBarry Smith Concepts: Unstructured multigrid preconditioner 837389730f3SMark F. Adams 8381c1aac46SBarry Smith .seealso: PCGAMGSetProcEqLim() 839389730f3SMark F. Adams @*/ 840389730f3SMark F. Adams PetscErrorCode PCGAMGSetCoarseEqLim(PC pc, PetscInt n) 841389730f3SMark F. Adams { 842389730f3SMark F. Adams PetscErrorCode ierr; 843389730f3SMark F. Adams 844389730f3SMark F. Adams PetscFunctionBegin; 845389730f3SMark F. Adams PetscValidHeaderSpecific(pc,PC_CLASSID,1); 846389730f3SMark F. Adams ierr = PetscTryMethod(pc,"PCGAMGSetCoarseEqLim_C",(PC,PetscInt),(pc,n));CHKERRQ(ierr); 847389730f3SMark F. Adams PetscFunctionReturn(0); 848389730f3SMark F. Adams } 849389730f3SMark F. Adams 850389730f3SMark F. Adams #undef __FUNCT__ 851389730f3SMark F. Adams #define __FUNCT__ "PCGAMGSetCoarseEqLim_GAMG" 8521e6b0712SBarry Smith static PetscErrorCode PCGAMGSetCoarseEqLim_GAMG(PC pc, PetscInt n) 853389730f3SMark F. Adams { 854389730f3SMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 855389730f3SMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 856389730f3SMark F. Adams 857389730f3SMark F. Adams PetscFunctionBegin; 8589d5b6da9SMark F. Adams if (n>0) pc_gamg->coarse_eq_limit = n; 859389730f3SMark F. Adams PetscFunctionReturn(0); 860389730f3SMark F. Adams } 861389730f3SMark F. Adams 862389730f3SMark F. Adams #undef __FUNCT__ 8638263b398SMark F. Adams #define __FUNCT__ "PCGAMGSetRepartitioning" 864676e1743SMark F. Adams /*@ 8658263b398SMark F. Adams PCGAMGSetRepartitioning - Repartition the coarse grids 866676e1743SMark F. Adams 867676e1743SMark F. Adams Collective on PC 868676e1743SMark F. Adams 869676e1743SMark F. Adams Input Parameters: 8701cc46a46SBarry Smith + pc - the preconditioner context 8711cc46a46SBarry Smith - n - PETSC_TRUE or PETSC_FALSE 872676e1743SMark F. Adams 873676e1743SMark F. Adams Options Database Key: 8741cc46a46SBarry Smith . -pc_gamg_repartition <true,false> 875676e1743SMark F. Adams 876676e1743SMark F. Adams Level: intermediate 877676e1743SMark F. Adams 8781c1aac46SBarry Smith Concepts: Unstructured multigrid preconditioner 879676e1743SMark F. Adams 880676e1743SMark F. Adams .seealso: () 881676e1743SMark F. Adams @*/ 8828263b398SMark F. Adams PetscErrorCode PCGAMGSetRepartitioning(PC pc, PetscBool n) 883676e1743SMark F. Adams { 884676e1743SMark F. Adams PetscErrorCode ierr; 885676e1743SMark F. Adams 886676e1743SMark F. Adams PetscFunctionBegin; 887676e1743SMark F. Adams PetscValidHeaderSpecific(pc,PC_CLASSID,1); 8888263b398SMark F. Adams ierr = PetscTryMethod(pc,"PCGAMGSetRepartitioning_C",(PC,PetscBool),(pc,n));CHKERRQ(ierr); 889676e1743SMark F. Adams PetscFunctionReturn(0); 890676e1743SMark F. Adams } 891676e1743SMark F. Adams 892676e1743SMark F. Adams #undef __FUNCT__ 8938263b398SMark F. Adams #define __FUNCT__ "PCGAMGSetRepartitioning_GAMG" 8941e6b0712SBarry Smith static PetscErrorCode PCGAMGSetRepartitioning_GAMG(PC pc, PetscBool n) 895676e1743SMark F. Adams { 896c20e4228SMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 897c20e4228SMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 898676e1743SMark F. Adams 899676e1743SMark F. Adams PetscFunctionBegin; 9009d5b6da9SMark F. Adams pc_gamg->repart = n; 901676e1743SMark F. Adams PetscFunctionReturn(0); 902676e1743SMark F. Adams } 903676e1743SMark F. Adams 904676e1743SMark F. Adams #undef __FUNCT__ 9051cc46a46SBarry Smith #define __FUNCT__ "PCGAMGSetReuseInterpolation" 906dfd5c07aSMark F. Adams /*@ 9071cc46a46SBarry Smith PCGAMGSetReuseInterpolation - Reuse prolongation when rebuilding preconditioner 908dfd5c07aSMark F. Adams 909dfd5c07aSMark F. Adams Collective on PC 910dfd5c07aSMark F. Adams 911dfd5c07aSMark F. Adams Input Parameters: 9121cc46a46SBarry Smith + pc - the preconditioner context 9131cc46a46SBarry Smith - n - PETSC_TRUE or PETSC_FALSE 914dfd5c07aSMark F. Adams 915dfd5c07aSMark F. Adams Options Database Key: 9161cc46a46SBarry Smith . -pc_gamg_reuse_interpolation <true,false> 917dfd5c07aSMark F. Adams 918dfd5c07aSMark F. Adams Level: intermediate 919dfd5c07aSMark F. Adams 9201c1aac46SBarry Smith Concepts: Unstructured multigrid preconditioner 921dfd5c07aSMark F. Adams 922dfd5c07aSMark F. Adams .seealso: () 923dfd5c07aSMark F. Adams @*/ 9241cc46a46SBarry Smith PetscErrorCode PCGAMGSetReuseInterpolation(PC pc, PetscBool n) 925dfd5c07aSMark F. Adams { 926dfd5c07aSMark F. Adams PetscErrorCode ierr; 927dfd5c07aSMark F. Adams 928dfd5c07aSMark F. Adams PetscFunctionBegin; 929dfd5c07aSMark F. Adams PetscValidHeaderSpecific(pc,PC_CLASSID,1); 9301cc46a46SBarry Smith ierr = PetscTryMethod(pc,"PCGAMGSetReuseInterpolation_C",(PC,PetscBool),(pc,n));CHKERRQ(ierr); 931dfd5c07aSMark F. Adams PetscFunctionReturn(0); 932dfd5c07aSMark F. Adams } 933dfd5c07aSMark F. Adams 934dfd5c07aSMark F. Adams #undef __FUNCT__ 9351cc46a46SBarry Smith #define __FUNCT__ "PCGAMGSetReuseInterpolation_GAMG" 9361cc46a46SBarry Smith static PetscErrorCode PCGAMGSetReuseInterpolation_GAMG(PC pc, PetscBool n) 937dfd5c07aSMark F. Adams { 938dfd5c07aSMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 939dfd5c07aSMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 940dfd5c07aSMark F. Adams 941dfd5c07aSMark F. Adams PetscFunctionBegin; 942dfd5c07aSMark F. Adams pc_gamg->reuse_prol = n; 943dfd5c07aSMark F. Adams PetscFunctionReturn(0); 944dfd5c07aSMark F. Adams } 945dfd5c07aSMark F. Adams 946dfd5c07aSMark F. Adams #undef __FUNCT__ 947ffc955d6SMark F. Adams #define __FUNCT__ "PCGAMGSetUseASMAggs" 948ffc955d6SMark F. Adams /*@ 949ffc955d6SMark F. Adams PCGAMGSetUseASMAggs - 950ffc955d6SMark F. Adams 951ffc955d6SMark F. Adams Collective on PC 952ffc955d6SMark F. Adams 953ffc955d6SMark F. Adams Input Parameters: 954ffc955d6SMark F. Adams . pc - the preconditioner context 955ffc955d6SMark F. Adams 956ffc955d6SMark F. Adams 957ffc955d6SMark F. Adams Options Database Key: 958ffc955d6SMark F. Adams . -pc_gamg_use_agg_gasm 959ffc955d6SMark F. Adams 960ffc955d6SMark F. Adams Level: intermediate 961ffc955d6SMark F. Adams 9621c1aac46SBarry Smith Concepts: Unstructured multigrid preconditioner 963ffc955d6SMark F. Adams 964ffc955d6SMark F. Adams .seealso: () 965ffc955d6SMark F. Adams @*/ 966ffc955d6SMark F. Adams PetscErrorCode PCGAMGSetUseASMAggs(PC pc, PetscBool n) 967ffc955d6SMark F. Adams { 968ffc955d6SMark F. Adams PetscErrorCode ierr; 969ffc955d6SMark F. Adams 970ffc955d6SMark F. Adams PetscFunctionBegin; 971ffc955d6SMark F. Adams PetscValidHeaderSpecific(pc,PC_CLASSID,1); 972ffc955d6SMark F. Adams ierr = PetscTryMethod(pc,"PCGAMGSetUseASMAggs_C",(PC,PetscBool),(pc,n));CHKERRQ(ierr); 973ffc955d6SMark F. Adams PetscFunctionReturn(0); 974ffc955d6SMark F. Adams } 975ffc955d6SMark F. Adams 976ffc955d6SMark F. Adams #undef __FUNCT__ 977ffc955d6SMark F. Adams #define __FUNCT__ "PCGAMGSetUseASMAggs_GAMG" 9781e6b0712SBarry Smith static PetscErrorCode PCGAMGSetUseASMAggs_GAMG(PC pc, PetscBool n) 979ffc955d6SMark F. Adams { 980ffc955d6SMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 981ffc955d6SMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 982ffc955d6SMark F. Adams 983ffc955d6SMark F. Adams PetscFunctionBegin; 984ffc955d6SMark F. Adams pc_gamg->use_aggs_in_gasm = n; 985ffc955d6SMark F. Adams PetscFunctionReturn(0); 986ffc955d6SMark F. Adams } 987ffc955d6SMark F. Adams 988ffc955d6SMark F. Adams #undef __FUNCT__ 9894ef23d27SMark F. Adams #define __FUNCT__ "PCGAMGSetNlevels" 9904ef23d27SMark F. Adams /*@ 9911cc46a46SBarry Smith PCGAMGSetNlevels - Sets the maximum number of levels PCGAMG will use 9924ef23d27SMark F. Adams 9934ef23d27SMark F. Adams Not collective on PC 9944ef23d27SMark F. Adams 9954ef23d27SMark F. Adams Input Parameters: 9961cc46a46SBarry Smith + pc - the preconditioner 9971cc46a46SBarry Smith - n - the maximum number of levels to use 9984ef23d27SMark F. Adams 9994ef23d27SMark F. Adams Options Database Key: 10004ef23d27SMark F. Adams . -pc_mg_levels 10014ef23d27SMark F. Adams 10024ef23d27SMark F. Adams Level: intermediate 10034ef23d27SMark F. Adams 10041c1aac46SBarry Smith Concepts: Unstructured multigrid preconditioner 10054ef23d27SMark F. Adams 10064ef23d27SMark F. Adams .seealso: () 10074ef23d27SMark F. Adams @*/ 10084ef23d27SMark F. Adams PetscErrorCode PCGAMGSetNlevels(PC pc, PetscInt n) 10094ef23d27SMark F. Adams { 10104ef23d27SMark F. Adams PetscErrorCode ierr; 10114ef23d27SMark F. Adams 10124ef23d27SMark F. Adams PetscFunctionBegin; 10134ef23d27SMark F. Adams PetscValidHeaderSpecific(pc,PC_CLASSID,1); 10144ef23d27SMark F. Adams ierr = PetscTryMethod(pc,"PCGAMGSetNlevels_C",(PC,PetscInt),(pc,n));CHKERRQ(ierr); 10154ef23d27SMark F. Adams PetscFunctionReturn(0); 10164ef23d27SMark F. Adams } 10174ef23d27SMark F. Adams 10184ef23d27SMark F. Adams #undef __FUNCT__ 10194ef23d27SMark F. Adams #define __FUNCT__ "PCGAMGSetNlevels_GAMG" 10201e6b0712SBarry Smith static PetscErrorCode PCGAMGSetNlevels_GAMG(PC pc, PetscInt n) 10214ef23d27SMark F. Adams { 10224ef23d27SMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 10234ef23d27SMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 10244ef23d27SMark F. Adams 10254ef23d27SMark F. Adams PetscFunctionBegin; 10269d5b6da9SMark F. Adams pc_gamg->Nlevels = n; 10274ef23d27SMark F. Adams PetscFunctionReturn(0); 10284ef23d27SMark F. Adams } 10294ef23d27SMark F. Adams 10304ef23d27SMark F. Adams #undef __FUNCT__ 10313542efc5SMark F. Adams #define __FUNCT__ "PCGAMGSetThreshold" 10323542efc5SMark F. Adams /*@ 10333542efc5SMark F. Adams PCGAMGSetThreshold - Relative threshold to use for dropping edges in aggregation graph 10343542efc5SMark F. Adams 10353542efc5SMark F. Adams Not collective on PC 10363542efc5SMark F. Adams 10373542efc5SMark F. Adams Input Parameters: 10381cc46a46SBarry Smith + pc - the preconditioner context 1039b001cb0fSBarry Smith - threshold - the threshold value, 0.0 means keep all nonzero entries in the graph; negative means keep even zero entries in the graph 10403542efc5SMark F. Adams 10413542efc5SMark F. Adams Options Database Key: 10421cc46a46SBarry Smith . -pc_gamg_threshold <threshold> 10433542efc5SMark F. Adams 10443542efc5SMark F. Adams Level: intermediate 10453542efc5SMark F. Adams 10461c1aac46SBarry Smith Concepts: Unstructured multigrid preconditioner 10473542efc5SMark F. Adams 10483542efc5SMark F. Adams .seealso: () 10493542efc5SMark F. Adams @*/ 10503542efc5SMark F. Adams PetscErrorCode PCGAMGSetThreshold(PC pc, PetscReal n) 10513542efc5SMark F. Adams { 10523542efc5SMark F. Adams PetscErrorCode ierr; 10533542efc5SMark F. Adams 10543542efc5SMark F. Adams PetscFunctionBegin; 10553542efc5SMark F. Adams PetscValidHeaderSpecific(pc,PC_CLASSID,1); 10563542efc5SMark F. Adams ierr = PetscTryMethod(pc,"PCGAMGSetThreshold_C",(PC,PetscReal),(pc,n));CHKERRQ(ierr); 10573542efc5SMark F. Adams PetscFunctionReturn(0); 10583542efc5SMark F. Adams } 10593542efc5SMark F. Adams 10603542efc5SMark F. Adams #undef __FUNCT__ 10613542efc5SMark F. Adams #define __FUNCT__ "PCGAMGSetThreshold_GAMG" 10621e6b0712SBarry Smith static PetscErrorCode PCGAMGSetThreshold_GAMG(PC pc, PetscReal n) 10633542efc5SMark F. Adams { 1064c20e4228SMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 1065c20e4228SMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 10663542efc5SMark F. Adams 10673542efc5SMark F. Adams PetscFunctionBegin; 10689d5b6da9SMark F. Adams pc_gamg->threshold = n; 10693542efc5SMark F. Adams PetscFunctionReturn(0); 10703542efc5SMark F. Adams } 10713542efc5SMark F. Adams 10723542efc5SMark F. Adams #undef __FUNCT__ 10739d5b6da9SMark F. Adams #define __FUNCT__ "PCGAMGSetType" 1074676e1743SMark F. Adams /*@ 1075c60c7ad4SBarry Smith PCGAMGSetType - Set solution method 1076676e1743SMark F. Adams 1077676e1743SMark F. Adams Collective on PC 1078676e1743SMark F. Adams 1079676e1743SMark F. Adams Input Parameters: 1080c60c7ad4SBarry Smith + pc - the preconditioner context 1081c60c7ad4SBarry Smith - type - PCGAMGAGG, PCGAMGGEO, or PCGAMGCLASSICAL 1082676e1743SMark F. Adams 1083676e1743SMark F. Adams Options Database Key: 1084c60c7ad4SBarry Smith . -pc_gamg_type <agg,geo,classical> 1085676e1743SMark F. Adams 1086676e1743SMark F. Adams Level: intermediate 1087676e1743SMark F. Adams 10881c1aac46SBarry Smith Concepts: Unstructured multigrid preconditioner 1089676e1743SMark F. Adams 1090c60c7ad4SBarry Smith .seealso: PCGAMGGetType(), PCGAMG 1091676e1743SMark F. Adams @*/ 109219fd82e9SBarry Smith PetscErrorCode PCGAMGSetType(PC pc, PCGAMGType type) 1093676e1743SMark F. Adams { 1094676e1743SMark F. Adams PetscErrorCode ierr; 1095676e1743SMark F. Adams 1096676e1743SMark F. Adams PetscFunctionBegin; 1097676e1743SMark F. Adams PetscValidHeaderSpecific(pc,PC_CLASSID,1); 1098806fa848SBarry Smith ierr = PetscTryMethod(pc,"PCGAMGSetType_C",(PC,PCGAMGType),(pc,type));CHKERRQ(ierr); 1099676e1743SMark F. Adams PetscFunctionReturn(0); 1100676e1743SMark F. Adams } 1101676e1743SMark F. Adams 1102676e1743SMark F. Adams #undef __FUNCT__ 1103c60c7ad4SBarry Smith #define __FUNCT__ "PCGAMGGetType" 1104c60c7ad4SBarry Smith /*@ 1105c60c7ad4SBarry Smith PCGAMGGetType - Get solution method 1106c60c7ad4SBarry Smith 1107c60c7ad4SBarry Smith Collective on PC 1108c60c7ad4SBarry Smith 1109c60c7ad4SBarry Smith Input Parameter: 1110c60c7ad4SBarry Smith . pc - the preconditioner context 1111c60c7ad4SBarry Smith 1112c60c7ad4SBarry Smith Output Parameter: 1113c60c7ad4SBarry Smith . type - the type of algorithm used 1114c60c7ad4SBarry Smith 1115c60c7ad4SBarry Smith Level: intermediate 1116c60c7ad4SBarry Smith 11171c1aac46SBarry Smith Concepts: Unstructured multigrid preconditioner 1118c60c7ad4SBarry Smith 11191c1aac46SBarry Smith .seealso: PCGAMGSetType(), PCGAMGType 1120c60c7ad4SBarry Smith @*/ 1121c60c7ad4SBarry Smith PetscErrorCode PCGAMGGetType(PC pc, PCGAMGType *type) 1122c60c7ad4SBarry Smith { 1123c60c7ad4SBarry Smith PetscErrorCode ierr; 1124c60c7ad4SBarry Smith 1125c60c7ad4SBarry Smith PetscFunctionBegin; 1126c60c7ad4SBarry Smith PetscValidHeaderSpecific(pc,PC_CLASSID,1); 1127c60c7ad4SBarry Smith ierr = PetscUseMethod(pc,"PCGAMGGetType_C",(PC,PCGAMGType*),(pc,type));CHKERRQ(ierr); 1128c60c7ad4SBarry Smith PetscFunctionReturn(0); 1129c60c7ad4SBarry Smith } 1130c60c7ad4SBarry Smith 1131c60c7ad4SBarry Smith #undef __FUNCT__ 1132c60c7ad4SBarry Smith #define __FUNCT__ "PCGAMGGetType_GAMG" 1133c60c7ad4SBarry Smith static PetscErrorCode PCGAMGGetType_GAMG(PC pc, PCGAMGType *type) 1134c60c7ad4SBarry Smith { 1135c60c7ad4SBarry Smith PC_MG *mg = (PC_MG*)pc->data; 1136c60c7ad4SBarry Smith PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 1137c60c7ad4SBarry Smith 1138c60c7ad4SBarry Smith PetscFunctionBegin; 1139c60c7ad4SBarry Smith *type = pc_gamg->type; 1140c60c7ad4SBarry Smith PetscFunctionReturn(0); 1141c60c7ad4SBarry Smith } 1142c60c7ad4SBarry Smith 1143c60c7ad4SBarry Smith #undef __FUNCT__ 11449d5b6da9SMark F. Adams #define __FUNCT__ "PCGAMGSetType_GAMG" 11451e6b0712SBarry Smith static PetscErrorCode PCGAMGSetType_GAMG(PC pc, PCGAMGType type) 1146676e1743SMark F. Adams { 11479d5b6da9SMark F. Adams PetscErrorCode ierr,(*r)(PC); 11481ab5ffc9SJed Brown PC_MG *mg = (PC_MG*)pc->data; 11491ab5ffc9SJed Brown PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 1150676e1743SMark F. Adams 1151676e1743SMark F. Adams PetscFunctionBegin; 1152c60c7ad4SBarry Smith pc_gamg->type = type; 11531c9cd337SJed Brown ierr = PetscFunctionListFind(GAMGList,type,&r);CHKERRQ(ierr); 11549d5b6da9SMark F. Adams if (!r) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_UNKNOWN_TYPE,"Unknown GAMG type %s given",type); 11551ab5ffc9SJed Brown if (pc_gamg->ops->destroy) { 11561ab5ffc9SJed Brown ierr = (*pc_gamg->ops->destroy)(pc);CHKERRQ(ierr); 11571ab5ffc9SJed Brown ierr = PetscMemzero(pc_gamg->ops,sizeof(struct _PCGAMGOps));CHKERRQ(ierr); 1158e616c208SToby Isaac pc_gamg->ops->createlevel = PCGAMGCreateLevel_GAMG; 11593ae0bb68SMark Adams /* cleaning up common data in pc_gamg - this should disapear someday */ 11603ae0bb68SMark Adams pc_gamg->data_cell_cols = 0; 11613ae0bb68SMark Adams pc_gamg->data_cell_rows = 0; 11623ae0bb68SMark Adams pc_gamg->orig_data_cell_cols = 0; 11633ae0bb68SMark Adams pc_gamg->orig_data_cell_rows = 0; 11643ae0bb68SMark Adams ierr = PetscFree(pc_gamg->data);CHKERRQ(ierr); 11653ae0bb68SMark Adams pc_gamg->data_sz = 0; 11661ab5ffc9SJed Brown } 11671ab5ffc9SJed Brown ierr = PetscFree(pc_gamg->gamg_type_name);CHKERRQ(ierr); 11681ab5ffc9SJed Brown ierr = PetscStrallocpy(type,&pc_gamg->gamg_type_name);CHKERRQ(ierr); 11699d5b6da9SMark F. Adams ierr = (*r)(pc);CHKERRQ(ierr); 1170676e1743SMark F. Adams PetscFunctionReturn(0); 1171676e1743SMark F. Adams } 1172676e1743SMark F. Adams 11735b89ad90SMark F. Adams #undef __FUNCT__ 11745adeb434SBarry Smith #define __FUNCT__ "PCView_GAMG" 11755adeb434SBarry Smith static PetscErrorCode PCView_GAMG(PC pc,PetscViewer viewer) 11765adeb434SBarry Smith { 11775adeb434SBarry Smith PetscErrorCode ierr; 11785adeb434SBarry Smith PC_MG *mg = (PC_MG*)pc->data; 11795adeb434SBarry Smith PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 11805adeb434SBarry Smith 11815adeb434SBarry Smith PetscFunctionBegin; 11825adeb434SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," GAMG specific options\n");CHKERRQ(ierr); 1183b001cb0fSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," Threshold for dropping small values from graph %g\n",(double)pc_gamg->threshold);CHKERRQ(ierr); 11845adeb434SBarry Smith if (pc_gamg->ops->view) { 11855adeb434SBarry Smith ierr = (*pc_gamg->ops->view)(pc,viewer);CHKERRQ(ierr); 11865adeb434SBarry Smith } 11875adeb434SBarry Smith PetscFunctionReturn(0); 11885adeb434SBarry Smith } 11895adeb434SBarry Smith 11905adeb434SBarry Smith #undef __FUNCT__ 11915b89ad90SMark F. Adams #define __FUNCT__ "PCSetFromOptions_GAMG" 11928c34d3f5SBarry Smith PetscErrorCode PCSetFromOptions_GAMG(PetscOptions *PetscOptionsObject,PC pc) 11935b89ad90SMark F. Adams { 1194676e1743SMark F. Adams PetscErrorCode ierr; 1195676e1743SMark F. Adams PC_MG *mg = (PC_MG*)pc->data; 1196676e1743SMark F. Adams PC_GAMG *pc_gamg = (PC_GAMG*)mg->innerctx; 1197676e1743SMark F. Adams PetscBool flag; 11983b4367a7SBarry Smith MPI_Comm comm; 11995b89ad90SMark F. Adams 12005b89ad90SMark F. Adams PetscFunctionBegin; 12013b4367a7SBarry Smith ierr = PetscObjectGetComm((PetscObject)pc,&comm);CHKERRQ(ierr); 1202e55864a3SBarry Smith ierr = PetscOptionsHead(PetscOptionsObject,"GAMG options");CHKERRQ(ierr); 1203676e1743SMark F. Adams { 1204bd94a7aaSJed Brown char tname[256]; 12051a1c1e04SBarry Smith ierr = PetscOptionsFList("-pc_gamg_type","Type of AMG method","PCGAMGSetType",GAMGList, pc_gamg->gamg_type_name, tname, sizeof(tname), &flag);CHKERRQ(ierr); 1206bd94a7aaSJed Brown if (flag) { 1207bd94a7aaSJed Brown ierr = PCGAMGSetType(pc,tname);CHKERRQ(ierr); 12081ab5ffc9SJed Brown } 120994ae4db5SBarry Smith ierr = PetscOptionsBool("-pc_gamg_repartition","Repartion coarse grids","PCGAMGRepartitioning",pc_gamg->repart,&pc_gamg->repart,NULL);CHKERRQ(ierr); 12101cc46a46SBarry Smith ierr = PetscOptionsBool("-pc_gamg_reuse_interpolation","Reuse prolongation operator","PCGAMGReuseInterpolation",pc_gamg->reuse_prol,&pc_gamg->reuse_prol,NULL);CHKERRQ(ierr); 121194ae4db5SBarry Smith ierr = PetscOptionsBool("-pc_gamg_use_agg_gasm","Use aggregation agragates for GASM smoother","PCGAMGUseASMAggs",pc_gamg->use_aggs_in_gasm,&pc_gamg->use_aggs_in_gasm,NULL);CHKERRQ(ierr); 121294ae4db5SBarry Smith ierr = PetscOptionsInt("-pc_gamg_process_eq_limit","Limit (goal) on number of equations per process on coarse grids","PCGAMGSetProcEqLim",pc_gamg->min_eq_proc,&pc_gamg->min_eq_proc,NULL);CHKERRQ(ierr); 121394ae4db5SBarry Smith ierr = PetscOptionsInt("-pc_gamg_coarse_eq_limit","Limit on number of equations for the coarse grid","PCGAMGSetCoarseEqLim",pc_gamg->coarse_eq_limit,&pc_gamg->coarse_eq_limit,NULL);CHKERRQ(ierr); 121494ae4db5SBarry Smith ierr = PetscOptionsReal("-pc_gamg_threshold","Relative threshold to use for dropping edges in aggregation graph","PCGAMGSetThreshold",pc_gamg->threshold,&pc_gamg->threshold,&flag);CHKERRQ(ierr); 121594ae4db5SBarry Smith ierr = PetscOptionsInt("-pc_mg_levels","Set number of MG levels","PCGAMGSetNlevels",pc_gamg->Nlevels,&pc_gamg->Nlevels,NULL);CHKERRQ(ierr); 1216b7cbab4eSMark Adams 1217b7cbab4eSMark Adams /* set options for subtype */ 1218e55864a3SBarry Smith if (pc_gamg->ops->setfromoptions) {ierr = (*pc_gamg->ops->setfromoptions)(PetscOptionsObject,pc);CHKERRQ(ierr);} 1219676e1743SMark F. Adams } 1220676e1743SMark F. Adams ierr = PetscOptionsTail();CHKERRQ(ierr); 12215b89ad90SMark F. Adams PetscFunctionReturn(0); 12225b89ad90SMark F. Adams } 12235b89ad90SMark F. Adams 12245b89ad90SMark F. Adams /* -------------------------------------------------------------------------- */ 12255b89ad90SMark F. Adams /*MC 12261cc46a46SBarry Smith PCGAMG - Geometric algebraic multigrid (AMG) preconditioner 12275b89ad90SMark F. Adams 1228280d9858SJed Brown Options Database Keys: 12295b89ad90SMark F. Adams Multigrid options(inherited) 12301cc46a46SBarry Smith + -pc_mg_cycles <v>: v or w (PCMGSetCycleType()) 1231280d9858SJed Brown . -pc_mg_smoothup <1>: Number of post-smoothing steps (PCMGSetNumberSmoothUp) 1232280d9858SJed Brown . -pc_mg_smoothdown <1>: Number of pre-smoothing steps (PCMGSetNumberSmoothDown) 12338c1c2452SJed Brown - -pc_mg_type <multiplicative>: (one of) additive multiplicative full kascade 12345b89ad90SMark F. Adams 12351cc46a46SBarry Smith 12361cc46a46SBarry Smith Notes: In order to obtain good performance for PCGAMG for vector valued problems you must 12371cc46a46SBarry Smith $ Call MatSetBlockSize() to indicate the number of degrees of freedom per grid point 12381cc46a46SBarry Smith $ Call MatSetNearNullSpace() (or PCSetCoordinates() if solving the equations of elasticity) to indicate the near null space of the operator 12391cc46a46SBarry Smith $ See the Users Manual Chapter 4 for more details 12401cc46a46SBarry Smith 12415b89ad90SMark F. Adams Level: intermediate 1242280d9858SJed Brown 12431cc46a46SBarry Smith Concepts: algebraic multigrid 12445b89ad90SMark F. Adams 12451cc46a46SBarry Smith .seealso: PCCreate(), PCSetType(), MatSetBlockSize(), PCMGType, PCSetCoordinates(), MatSetNearNullSpace(), PCGAMGSetType(), PCGAMGAGG, PCGAMGGEO, PCGAMGCLASSICAL, PCGAMGSetProcEqLim(), 12461cc46a46SBarry Smith PCGAMGSetCoarseEqLim(), PCGAMGSetRepartitioning(), PCGAMGRegister(), PCGAMGSetReuseInterpolation(), PCGAMGSetUseASMAggs(), PCGAMGSetNlevels(), PCGAMGSetThreshold(), PCGAMGGetType() 12475b89ad90SMark F. Adams M*/ 1248b2573a8aSBarry Smith 12495b89ad90SMark F. Adams #undef __FUNCT__ 12505b89ad90SMark F. Adams #define __FUNCT__ "PCCreate_GAMG" 12518cc058d9SJed Brown PETSC_EXTERN PetscErrorCode PCCreate_GAMG(PC pc) 12525b89ad90SMark F. Adams { 12535b89ad90SMark F. Adams PetscErrorCode ierr; 12545b89ad90SMark F. Adams PC_GAMG *pc_gamg; 12555b89ad90SMark F. Adams PC_MG *mg; 12565b89ad90SMark F. Adams 12575b89ad90SMark F. Adams PetscFunctionBegin; 12581c1aac46SBarry Smith /* register AMG type */ 12591c1aac46SBarry Smith ierr = PCGAMGInitializePackage();CHKERRQ(ierr); 12601c1aac46SBarry Smith 12615b89ad90SMark F. Adams /* PCGAMG is an inherited class of PCMG. Initialize pc as PCMG */ 12621c1aac46SBarry Smith ierr = PCSetType(pc, PCMG);CHKERRQ(ierr); 12635b89ad90SMark F. Adams ierr = PetscObjectChangeTypeName((PetscObject)pc, PCGAMG);CHKERRQ(ierr); 12645b89ad90SMark F. Adams 12655b89ad90SMark F. Adams /* create a supporting struct and attach it to pc */ 1266b00a9115SJed Brown ierr = PetscNewLog(pc,&pc_gamg);CHKERRQ(ierr); 12675b89ad90SMark F. Adams mg = (PC_MG*)pc->data; 12681c1aac46SBarry Smith mg->galerkin = 2; /* Use Galerkin, but it is computed externally from PCMG by GAMG code */ 12695b89ad90SMark F. Adams mg->innerctx = pc_gamg; 12705b89ad90SMark F. Adams 1271b00a9115SJed Brown ierr = PetscNewLog(pc,&pc_gamg->ops);CHKERRQ(ierr); 12721ab5ffc9SJed Brown 12739d5b6da9SMark F. Adams pc_gamg->setup_count = 0; 12749d5b6da9SMark F. Adams /* these should be in subctx but repartitioning needs simple arrays */ 12759d5b6da9SMark F. Adams pc_gamg->data_sz = 0; 12769d5b6da9SMark F. Adams pc_gamg->data = 0; 12775b89ad90SMark F. Adams 12789d5b6da9SMark F. Adams /* overwrite the pointers of PCMG by the functions of base class PCGAMG */ 12795b89ad90SMark F. Adams pc->ops->setfromoptions = PCSetFromOptions_GAMG; 12805b89ad90SMark F. Adams pc->ops->setup = PCSetUp_GAMG; 12815b89ad90SMark F. Adams pc->ops->reset = PCReset_GAMG; 12825b89ad90SMark F. Adams pc->ops->destroy = PCDestroy_GAMG; 12835adeb434SBarry Smith mg->view = PCView_GAMG; 12845b89ad90SMark F. Adams 1285bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)pc,"PCGAMGSetProcEqLim_C",PCGAMGSetProcEqLim_GAMG);CHKERRQ(ierr); 1286bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)pc,"PCGAMGSetCoarseEqLim_C",PCGAMGSetCoarseEqLim_GAMG);CHKERRQ(ierr); 1287bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)pc,"PCGAMGSetRepartitioning_C",PCGAMGSetRepartitioning_GAMG);CHKERRQ(ierr); 12881cc46a46SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)pc,"PCGAMGSetReuseInterpolation_C",PCGAMGSetReuseInterpolation_GAMG);CHKERRQ(ierr); 1289bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)pc,"PCGAMGSetUseASMAggs_C",PCGAMGSetUseASMAggs_GAMG);CHKERRQ(ierr); 1290bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)pc,"PCGAMGSetThreshold_C",PCGAMGSetThreshold_GAMG);CHKERRQ(ierr); 1291bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)pc,"PCGAMGSetType_C",PCGAMGSetType_GAMG);CHKERRQ(ierr); 1292c60c7ad4SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)pc,"PCGAMGGetType_C",PCGAMGGetType_GAMG);CHKERRQ(ierr); 1293bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)pc,"PCGAMGSetNlevels_C",PCGAMGSetNlevels_GAMG);CHKERRQ(ierr); 12949d5b6da9SMark F. Adams pc_gamg->repart = PETSC_FALSE; 1295d3042614SMark Adams pc_gamg->reuse_prol = PETSC_FALSE; 1296ffc955d6SMark F. Adams pc_gamg->use_aggs_in_gasm = PETSC_FALSE; 1297038f3aa4SMark F. Adams pc_gamg->min_eq_proc = 50; 129825a145a7SMark Adams pc_gamg->coarse_eq_limit = 50; 1299d3042614SMark Adams pc_gamg->threshold = 0.; 13009d5b6da9SMark F. Adams pc_gamg->Nlevels = GAMG_MAXLEVELS; 13019ab59c8bSMark Adams pc_gamg->current_level = 0; /* don't need to init really */ 1302c238b0ebSToby Isaac pc_gamg->ops->createlevel = PCGAMGCreateLevel_GAMG; 13039d5b6da9SMark F. Adams 1304bd94a7aaSJed Brown /* PCSetUp_GAMG assumes that the type has been set, so set it to the default now */ 1305bd94a7aaSJed Brown ierr = PCGAMGSetType(pc,PCGAMGAGG);CHKERRQ(ierr); 13065b89ad90SMark F. Adams PetscFunctionReturn(0); 13075b89ad90SMark F. Adams } 13083e3471ccSMark Adams 13093e3471ccSMark Adams #undef __FUNCT__ 13103e3471ccSMark Adams #define __FUNCT__ "PCGAMGInitializePackage" 13113e3471ccSMark Adams /*@C 13123e3471ccSMark Adams PCGAMGInitializePackage - This function initializes everything in the PCGAMG package. It is called 13133e3471ccSMark Adams from PetscDLLibraryRegister() when using dynamic libraries, and on the first call to PCCreate_GAMG() 13143e3471ccSMark Adams when using static libraries. 13153e3471ccSMark Adams 13163e3471ccSMark Adams Level: developer 13173e3471ccSMark Adams 13183e3471ccSMark Adams .keywords: PC, PCGAMG, initialize, package 13193e3471ccSMark Adams .seealso: PetscInitialize() 13203e3471ccSMark Adams @*/ 13213e3471ccSMark Adams PetscErrorCode PCGAMGInitializePackage(void) 13223e3471ccSMark Adams { 13233e3471ccSMark Adams PetscErrorCode ierr; 13243e3471ccSMark Adams 13253e3471ccSMark Adams PetscFunctionBegin; 13263e3471ccSMark Adams if (PCGAMGPackageInitialized) PetscFunctionReturn(0); 13273e3471ccSMark Adams PCGAMGPackageInitialized = PETSC_TRUE; 13283e3471ccSMark Adams ierr = PetscFunctionListAdd(&GAMGList,PCGAMGGEO,PCCreateGAMG_GEO);CHKERRQ(ierr); 13293e3471ccSMark Adams ierr = PetscFunctionListAdd(&GAMGList,PCGAMGAGG,PCCreateGAMG_AGG);CHKERRQ(ierr); 13308e6d0c30SPeter Brune ierr = PetscFunctionListAdd(&GAMGList,PCGAMGCLASSICAL,PCCreateGAMG_Classical);CHKERRQ(ierr); 13313e3471ccSMark Adams ierr = PetscRegisterFinalize(PCGAMGFinalizePackage);CHKERRQ(ierr); 1332c1c463dbSMark Adams 1333c1c463dbSMark Adams /* general events */ 1334fd1112cbSBarry Smith ierr = PetscLogEventRegister("PCGAMGGraph_AGG", 0, &PC_GAMGGraph_AGG);CHKERRQ(ierr); 1335fd1112cbSBarry Smith ierr = PetscLogEventRegister("PCGAMGGraph_GEO", PC_CLASSID, &PC_GAMGGraph_GEO);CHKERRQ(ierr); 1336fd1112cbSBarry Smith ierr = PetscLogEventRegister("PCGAMGCoarse_AGG", PC_CLASSID, &PC_GAMGCoarsen_AGG);CHKERRQ(ierr); 1337fd1112cbSBarry Smith ierr = PetscLogEventRegister("PCGAMGCoarse_GEO", PC_CLASSID, &PC_GAMGCoarsen_GEO);CHKERRQ(ierr); 1338c1c463dbSMark Adams ierr = PetscLogEventRegister("PCGAMGProl_AGG", PC_CLASSID, &PC_GAMGProlongator_AGG);CHKERRQ(ierr); 1339c1c463dbSMark Adams ierr = PetscLogEventRegister("PCGAMGProl_GEO", PC_CLASSID, &PC_GAMGProlongator_GEO);CHKERRQ(ierr); 1340fd1112cbSBarry Smith ierr = PetscLogEventRegister("PCGAMGPOpt_AGG", PC_CLASSID, &PC_GAMGOptProlongator_AGG);CHKERRQ(ierr); 1341c1c463dbSMark Adams 13425b89ad90SMark F. Adams #if defined PETSC_GAMG_USE_LOG 13435b89ad90SMark F. Adams ierr = PetscLogEventRegister("GAMG: createProl", PC_CLASSID, &petsc_gamg_setup_events[SET1]);CHKERRQ(ierr); 13445b89ad90SMark F. Adams ierr = PetscLogEventRegister(" Graph", PC_CLASSID, &petsc_gamg_setup_events[GRAPH]);CHKERRQ(ierr); 13455b89ad90SMark F. Adams /* PetscLogEventRegister(" G.Mat", PC_CLASSID, &petsc_gamg_setup_events[GRAPH_MAT]); */ 13465b89ad90SMark F. Adams /* PetscLogEventRegister(" G.Filter", PC_CLASSID, &petsc_gamg_setup_events[GRAPH_FILTER]); */ 13475b89ad90SMark F. Adams /* PetscLogEventRegister(" G.Square", PC_CLASSID, &petsc_gamg_setup_events[GRAPH_SQR]); */ 13485b89ad90SMark F. Adams ierr = PetscLogEventRegister(" MIS/Agg", PC_CLASSID, &petsc_gamg_setup_events[SET4]);CHKERRQ(ierr); 13495b89ad90SMark F. Adams ierr = PetscLogEventRegister(" geo: growSupp", PC_CLASSID, &petsc_gamg_setup_events[SET5]);CHKERRQ(ierr); 13505b89ad90SMark F. Adams ierr = PetscLogEventRegister(" geo: triangle", PC_CLASSID, &petsc_gamg_setup_events[SET6]);CHKERRQ(ierr); 13515b89ad90SMark F. Adams ierr = PetscLogEventRegister(" search&set", PC_CLASSID, &petsc_gamg_setup_events[FIND_V]);CHKERRQ(ierr); 13525b89ad90SMark F. Adams ierr = PetscLogEventRegister(" SA: col data", PC_CLASSID, &petsc_gamg_setup_events[SET7]);CHKERRQ(ierr); 13535b89ad90SMark F. Adams ierr = PetscLogEventRegister(" SA: frmProl0", PC_CLASSID, &petsc_gamg_setup_events[SET8]);CHKERRQ(ierr); 13545b89ad90SMark F. Adams ierr = PetscLogEventRegister(" SA: smooth", PC_CLASSID, &petsc_gamg_setup_events[SET9]);CHKERRQ(ierr); 13555b89ad90SMark F. Adams ierr = PetscLogEventRegister("GAMG: partLevel", PC_CLASSID, &petsc_gamg_setup_events[SET2]);CHKERRQ(ierr); 13565b89ad90SMark F. Adams ierr = PetscLogEventRegister(" repartition", PC_CLASSID, &petsc_gamg_setup_events[SET12]);CHKERRQ(ierr); 13575b89ad90SMark F. Adams ierr = PetscLogEventRegister(" Invert-Sort", PC_CLASSID, &petsc_gamg_setup_events[SET13]);CHKERRQ(ierr); 13585b89ad90SMark F. Adams ierr = PetscLogEventRegister(" Move A", PC_CLASSID, &petsc_gamg_setup_events[SET14]);CHKERRQ(ierr); 13595b89ad90SMark F. Adams ierr = PetscLogEventRegister(" Move P", PC_CLASSID, &petsc_gamg_setup_events[SET15]);CHKERRQ(ierr); 13605b89ad90SMark F. Adams 13615b89ad90SMark F. Adams /* PetscLogEventRegister(" PL move data", PC_CLASSID, &petsc_gamg_setup_events[SET13]); */ 13625b89ad90SMark F. Adams /* PetscLogEventRegister("GAMG: fix", PC_CLASSID, &petsc_gamg_setup_events[SET10]); */ 13635b89ad90SMark F. Adams /* PetscLogEventRegister("GAMG: set levels", PC_CLASSID, &petsc_gamg_setup_events[SET11]); */ 13645b89ad90SMark F. Adams /* create timer stages */ 13655b89ad90SMark F. Adams #if defined GAMG_STAGES 13665b89ad90SMark F. Adams { 13675b89ad90SMark F. Adams char str[32]; 13685b89ad90SMark F. Adams PetscInt lidx; 13695b89ad90SMark F. Adams sprintf(str,"MG Level %d (finest)",0); 13705b89ad90SMark F. Adams ierr = PetscLogStageRegister(str, &gamg_stages[0]);CHKERRQ(ierr); 13715b89ad90SMark F. Adams for (lidx=1; lidx<9; lidx++) { 13725b89ad90SMark F. Adams sprintf(str,"MG Level %d",lidx); 13735b89ad90SMark F. Adams ierr = PetscLogStageRegister(str, &gamg_stages[lidx]);CHKERRQ(ierr); 13745b89ad90SMark F. Adams } 13755b89ad90SMark F. Adams } 13765b89ad90SMark F. Adams #endif 13775b89ad90SMark F. Adams #endif 13783e3471ccSMark Adams PetscFunctionReturn(0); 13793e3471ccSMark Adams } 13803e3471ccSMark Adams 13813e3471ccSMark Adams #undef __FUNCT__ 13823e3471ccSMark Adams #define __FUNCT__ "PCGAMGFinalizePackage" 13833e3471ccSMark Adams /*@C 13841c1aac46SBarry Smith PCGAMGFinalizePackage - This function frees everything from the PCGAMG package. It is 13851c1aac46SBarry Smith called from PetscFinalize() automatically. 13863e3471ccSMark Adams 13873e3471ccSMark Adams Level: developer 13883e3471ccSMark Adams 13893e3471ccSMark Adams .keywords: Petsc, destroy, package 13903e3471ccSMark Adams .seealso: PetscFinalize() 13913e3471ccSMark Adams @*/ 13923e3471ccSMark Adams PetscErrorCode PCGAMGFinalizePackage(void) 13933e3471ccSMark Adams { 13943e3471ccSMark Adams PetscErrorCode ierr; 13953e3471ccSMark Adams 13963e3471ccSMark Adams PetscFunctionBegin; 13973e3471ccSMark Adams PCGAMGPackageInitialized = PETSC_FALSE; 13983e3471ccSMark Adams ierr = PetscFunctionListDestroy(&GAMGList);CHKERRQ(ierr); 13993e3471ccSMark Adams PetscFunctionReturn(0); 14003e3471ccSMark Adams } 1401a36cf38bSToby Isaac 1402a36cf38bSToby Isaac #undef __FUNCT__ 1403a36cf38bSToby Isaac #define __FUNCT__ "PCGAMGRegister" 1404a36cf38bSToby Isaac /*@C 1405a36cf38bSToby Isaac PCGAMGRegister - Register a PCGAMG implementation. 1406a36cf38bSToby Isaac 1407a36cf38bSToby Isaac Input Parameters: 1408a36cf38bSToby Isaac + type - string that will be used as the name of the GAMG type. 1409a36cf38bSToby Isaac - create - function for creating the gamg context. 1410a36cf38bSToby Isaac 1411a36cf38bSToby Isaac Level: advanced 1412a36cf38bSToby Isaac 14131c1aac46SBarry Smith .seealso: PCGAMGType, PCGAMG, PCGAMGSetType() 1414a36cf38bSToby Isaac @*/ 1415a36cf38bSToby Isaac PetscErrorCode PCGAMGRegister(PCGAMGType type, PetscErrorCode (*create)(PC)) 1416a36cf38bSToby Isaac { 1417a36cf38bSToby Isaac PetscErrorCode ierr; 1418a36cf38bSToby Isaac 1419a36cf38bSToby Isaac PetscFunctionBegin; 1420a36cf38bSToby Isaac ierr = PCGAMGInitializePackage();CHKERRQ(ierr); 1421a36cf38bSToby Isaac ierr = PetscFunctionListAdd(&GAMGList,type,create);CHKERRQ(ierr); 1422a36cf38bSToby Isaac PetscFunctionReturn(0); 1423a36cf38bSToby Isaac } 1424a36cf38bSToby Isaac 1425