1b1a0a8a3SJed Brown /* 2f746d493SDmitry Karpeev This file defines an "generalized" additive Schwarz preconditioner for any Mat implementation. 3f1580f4eSBarry Smith In this version each MPI rank may intersect multiple subdomains and any subdomain may 4f1580f4eSBarry Smith intersect multiple MPI ranks. Intersections of subdomains with MPI ranks are called *local 56a4f0f73SDmitry Karpeev subdomains*. 6b1a0a8a3SJed Brown 78f3b4b4dSDmitry Karpeev N - total number of distinct global subdomains (set explicitly in PCGASMSetTotalSubdomains() or implicitly PCGASMSetSubdomains() and then calculated in PCSetUp_GASM()) 8f1580f4eSBarry Smith n - actual number of local subdomains on this rank (set in PCGASMSetSubdomains() or calculated in PCGASMSetTotalSubdomains()) 9f1580f4eSBarry Smith nmax - maximum number of local subdomains per rank (calculated in PCSetUp_GASM()) 10b1a0a8a3SJed Brown */ 11af0996ceSBarry Smith #include <petsc/private/pcimpl.h> /*I "petscpc.h" I*/ 121e25c274SJed Brown #include <petscdm.h> 13b1a0a8a3SJed Brown 14b1a0a8a3SJed Brown typedef struct { 15f746d493SDmitry Karpeev PetscInt N, n, nmax; 16b1a0a8a3SJed Brown PetscInt overlap; /* overlap requested by user */ 178f3b4b4dSDmitry Karpeev PCGASMType type; /* use reduced interpolation, restriction or both */ 188f3b4b4dSDmitry Karpeev PetscBool type_set; /* if user set this value (so won't change it for symmetric problems) */ 198f3b4b4dSDmitry Karpeev PetscBool same_subdomain_solvers; /* flag indicating whether all local solvers are same */ 208f3b4b4dSDmitry Karpeev PetscBool sort_indices; /* flag to sort subdomain indices */ 218f3b4b4dSDmitry Karpeev PetscBool user_subdomains; /* whether the user set explicit subdomain index sets -- keep them on PCReset() */ 228f3b4b4dSDmitry Karpeev PetscBool dm_subdomains; /* whether DM is allowed to define subdomains */ 23ea91fabdSFande Kong PetscBool hierarchicalpartitioning; 248f3b4b4dSDmitry Karpeev IS *ois; /* index sets that define the outer (conceptually, overlapping) subdomains */ 258f3b4b4dSDmitry Karpeev IS *iis; /* index sets that define the inner (conceptually, nonoverlapping) subdomains */ 268f3b4b4dSDmitry Karpeev KSP *ksp; /* linear solvers for each subdomain */ 278f3b4b4dSDmitry Karpeev Mat *pmat; /* subdomain block matrices */ 28f746d493SDmitry Karpeev Vec gx, gy; /* Merged work vectors */ 29f746d493SDmitry Karpeev Vec *x, *y; /* Split work vectors; storage aliases pieces of storage of the above merged vectors. */ 306a4f0f73SDmitry Karpeev VecScatter gorestriction; /* merged restriction to disjoint union of outer subdomains */ 316a4f0f73SDmitry Karpeev VecScatter girestriction; /* merged restriction to disjoint union of inner subdomains */ 32ea91fabdSFande Kong VecScatter pctoouter; 33ea91fabdSFande Kong IS permutationIS; 34ea91fabdSFande Kong Mat permutationP; 35ea91fabdSFande Kong Mat pcmat; 36ea91fabdSFande Kong Vec pcx, pcy; 37f746d493SDmitry Karpeev } PC_GASM; 38b1a0a8a3SJed Brown 39d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCGASMComputeGlobalSubdomainNumbering_Private(PC pc, PetscInt **numbering, PetscInt **permutation) 40d71ae5a4SJacob Faibussowitsch { 418f3b4b4dSDmitry Karpeev PC_GASM *osm = (PC_GASM *)pc->data; 428f3b4b4dSDmitry Karpeev PetscInt i; 438f3b4b4dSDmitry Karpeev 448f3b4b4dSDmitry Karpeev PetscFunctionBegin; 458f3b4b4dSDmitry Karpeev /* Determine the number of globally-distinct subdomains and compute a global numbering for them. */ 469566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(osm->n, numbering, osm->n, permutation)); 479566063dSJacob Faibussowitsch PetscCall(PetscObjectsListGetGlobalNumbering(PetscObjectComm((PetscObject)pc), osm->n, (PetscObject *)osm->iis, NULL, *numbering)); 488f3b4b4dSDmitry Karpeev for (i = 0; i < osm->n; ++i) (*permutation)[i] = i; 499566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithPermutation(osm->n, *numbering, *permutation)); 503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 518f3b4b4dSDmitry Karpeev } 528f3b4b4dSDmitry Karpeev 53d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCGASMSubdomainView_Private(PC pc, PetscInt i, PetscViewer viewer) 54d71ae5a4SJacob Faibussowitsch { 55af538404SDmitry Karpeev PC_GASM *osm = (PC_GASM *)pc->data; 5606b43e7eSDmitry Karpeev PetscInt j, nidx; 57af538404SDmitry Karpeev const PetscInt *idx; 5806b43e7eSDmitry Karpeev PetscViewer sviewer; 59af538404SDmitry Karpeev char *cidx; 60af538404SDmitry Karpeev 61af538404SDmitry Karpeev PetscFunctionBegin; 622472a847SBarry Smith PetscCheck(i >= 0 && i < osm->n, PetscObjectComm((PetscObject)viewer), PETSC_ERR_ARG_WRONG, "Invalid subdomain %" PetscInt_FMT ": must nonnegative and less than %" PetscInt_FMT, i, osm->n); 634bde246dSDmitry Karpeev /* Inner subdomains. */ 649566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(osm->iis[i], &nidx)); 654bde246dSDmitry Karpeev /* 664bde246dSDmitry Karpeev No more than 15 characters per index plus a space. 674bde246dSDmitry Karpeev PetscViewerStringSPrintf requires a string of size at least 2, so use (nidx+1) instead of nidx, 684bde246dSDmitry Karpeev in case nidx == 0. That will take care of the space for the trailing '\0' as well. 694bde246dSDmitry Karpeev For nidx == 0, the whole string 16 '\0'. 704bde246dSDmitry Karpeev */ 7136a9e3b9SBarry Smith #define len 16 * (nidx + 1) + 1 729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &cidx)); 739566063dSJacob Faibussowitsch PetscCall(PetscViewerStringOpen(PETSC_COMM_SELF, cidx, len, &sviewer)); 7436a9e3b9SBarry Smith #undef len 759566063dSJacob Faibussowitsch PetscCall(ISGetIndices(osm->iis[i], &idx)); 7648a46eb9SPierre Jolivet for (j = 0; j < nidx; ++j) PetscCall(PetscViewerStringSPrintf(sviewer, "%" PetscInt_FMT " ", idx[j])); 779566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(osm->iis[i], &idx)); 789566063dSJacob Faibussowitsch PetscCall(PetscViewerDestroy(&sviewer)); 799566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Inner subdomain:\n")); 809566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 819566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 829566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "%s", cidx)); 839566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 849566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 859566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 869566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 879566063dSJacob Faibussowitsch PetscCall(PetscFree(cidx)); 884bde246dSDmitry Karpeev /* Outer subdomains. */ 899566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(osm->ois[i], &nidx)); 90eec7e3faSDmitry Karpeev /* 91eec7e3faSDmitry Karpeev No more than 15 characters per index plus a space. 92eec7e3faSDmitry Karpeev PetscViewerStringSPrintf requires a string of size at least 2, so use (nidx+1) instead of nidx, 93eec7e3faSDmitry Karpeev in case nidx == 0. That will take care of the space for the trailing '\0' as well. 94eec7e3faSDmitry Karpeev For nidx == 0, the whole string 16 '\0'. 95eec7e3faSDmitry Karpeev */ 9636a9e3b9SBarry Smith #define len 16 * (nidx + 1) + 1 979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &cidx)); 989566063dSJacob Faibussowitsch PetscCall(PetscViewerStringOpen(PETSC_COMM_SELF, cidx, len, &sviewer)); 9936a9e3b9SBarry Smith #undef len 1009566063dSJacob Faibussowitsch PetscCall(ISGetIndices(osm->ois[i], &idx)); 10148a46eb9SPierre Jolivet for (j = 0; j < nidx; ++j) PetscCall(PetscViewerStringSPrintf(sviewer, "%" PetscInt_FMT " ", idx[j])); 1029566063dSJacob Faibussowitsch PetscCall(PetscViewerDestroy(&sviewer)); 1039566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(osm->ois[i], &idx)); 1049566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Outer subdomain:\n")); 1059566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 1069566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 1079566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "%s", cidx)); 1089566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 1099566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 1109566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 1119566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 1129566063dSJacob Faibussowitsch PetscCall(PetscFree(cidx)); 1133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11406b43e7eSDmitry Karpeev } 11506b43e7eSDmitry Karpeev 116d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCGASMPrintSubdomains(PC pc) 117d71ae5a4SJacob Faibussowitsch { 11806b43e7eSDmitry Karpeev PC_GASM *osm = (PC_GASM *)pc->data; 11906b43e7eSDmitry Karpeev const char *prefix; 12006b43e7eSDmitry Karpeev char fname[PETSC_MAX_PATH_LEN + 1]; 1218f3b4b4dSDmitry Karpeev PetscInt l, d, count; 1229140fbc5SPierre Jolivet PetscBool found; 1230298fd71SBarry Smith PetscViewer viewer, sviewer = NULL; 1248f3b4b4dSDmitry Karpeev PetscInt *numbering, *permutation; /* global numbering of locally-supported subdomains and the permutation from the local ordering */ 12506b43e7eSDmitry Karpeev 12606b43e7eSDmitry Karpeev PetscFunctionBegin; 1279566063dSJacob Faibussowitsch PetscCall(PCGetOptionsPrefix(pc, &prefix)); 1289566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(NULL, prefix, "-pc_gasm_print_subdomains", &found)); 1293ba16761SJacob Faibussowitsch if (!found) PetscFunctionReturn(PETSC_SUCCESS); 1309566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetString(NULL, prefix, "-pc_gasm_print_subdomains", fname, sizeof(fname), &found)); 131c6a7a370SJeremy L Thompson if (!found) PetscCall(PetscStrncpy(fname, "stdout", sizeof(fname))); 1329566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIOpen(PetscObjectComm((PetscObject)pc), fname, &viewer)); 1334bde246dSDmitry Karpeev /* 1344bde246dSDmitry Karpeev Make sure the viewer has a name. Otherwise this may cause a deadlock or other weird errors when creating a subcomm viewer: 1354bde246dSDmitry Karpeev the subcomm viewer will attempt to inherit the viewer's name, which, if not set, will be constructed collectively on the comm. 1364bde246dSDmitry Karpeev */ 1379566063dSJacob Faibussowitsch PetscCall(PetscObjectName((PetscObject)viewer)); 1384bde246dSDmitry Karpeev l = 0; 1399566063dSJacob Faibussowitsch PetscCall(PCGASMComputeGlobalSubdomainNumbering_Private(pc, &numbering, &permutation)); 1408f3b4b4dSDmitry Karpeev for (count = 0; count < osm->N; ++count) { 1414bde246dSDmitry Karpeev /* Now let subdomains go one at a time in the global numbering order and print their subdomain/solver info. */ 1424bde246dSDmitry Karpeev if (l < osm->n) { 1434bde246dSDmitry Karpeev d = permutation[l]; /* d is the local number of the l-th smallest (in the global ordering) among the locally supported subdomains */ 1444bde246dSDmitry Karpeev if (numbering[d] == count) { 1459566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, ((PetscObject)osm->ois[d])->comm, &sviewer)); 1469566063dSJacob Faibussowitsch PetscCall(PCGASMSubdomainView_Private(pc, d, sviewer)); 1479566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, ((PetscObject)osm->ois[d])->comm, &sviewer)); 1484bde246dSDmitry Karpeev ++l; 149af538404SDmitry Karpeev } 1504bde246dSDmitry Karpeev } 1519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Barrier(PetscObjectComm((PetscObject)pc))); 1524bde246dSDmitry Karpeev } 1539566063dSJacob Faibussowitsch PetscCall(PetscFree2(numbering, permutation)); 1549566063dSJacob Faibussowitsch PetscCall(PetscViewerDestroy(&viewer)); 1553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 156af538404SDmitry Karpeev } 157af538404SDmitry Karpeev 158d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCView_GASM(PC pc, PetscViewer viewer) 159d71ae5a4SJacob Faibussowitsch { 160f746d493SDmitry Karpeev PC_GASM *osm = (PC_GASM *)pc->data; 161af538404SDmitry Karpeev const char *prefix; 162af538404SDmitry Karpeev PetscMPIInt rank, size; 1638f3b4b4dSDmitry Karpeev PetscInt bsz; 16406b43e7eSDmitry Karpeev PetscBool iascii, view_subdomains = PETSC_FALSE; 165b1a0a8a3SJed Brown PetscViewer sviewer; 1668f3b4b4dSDmitry Karpeev PetscInt count, l; 1676a4f0f73SDmitry Karpeev char overlap[256] = "user-defined overlap"; 1686a4f0f73SDmitry Karpeev char gsubdomains[256] = "unknown total number of subdomains"; 16906b43e7eSDmitry Karpeev char msubdomains[256] = "unknown max number of local subdomains"; 1708f3b4b4dSDmitry Karpeev PetscInt *numbering, *permutation; /* global numbering of locally-supported subdomains and the permutation from the local ordering */ 17111aeaf0aSBarry Smith 172b1a0a8a3SJed Brown PetscFunctionBegin; 1739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)pc), &size)); 1749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)pc), &rank)); 17506b43e7eSDmitry Karpeev 17648a46eb9SPierre Jolivet if (osm->overlap >= 0) PetscCall(PetscSNPrintf(overlap, sizeof(overlap), "requested amount of overlap = %" PetscInt_FMT, osm->overlap)); 17748a46eb9SPierre Jolivet if (osm->N != PETSC_DETERMINE) PetscCall(PetscSNPrintf(gsubdomains, sizeof(gsubdomains), "total number of subdomains = %" PetscInt_FMT, osm->N)); 17848a46eb9SPierre Jolivet if (osm->nmax != PETSC_DETERMINE) PetscCall(PetscSNPrintf(msubdomains, sizeof(msubdomains), "max number of local subdomains = %" PetscInt_FMT, osm->nmax)); 17906b43e7eSDmitry Karpeev 1809566063dSJacob Faibussowitsch PetscCall(PCGetOptionsPrefix(pc, &prefix)); 1819566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, prefix, "-pc_gasm_view_subdomains", &view_subdomains, NULL)); 18206b43e7eSDmitry Karpeev 1839566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 184b1a0a8a3SJed Brown if (iascii) { 18506b43e7eSDmitry Karpeev /* 18606b43e7eSDmitry Karpeev Make sure the viewer has a name. Otherwise this may cause a deadlock when creating a subcomm viewer: 18706b43e7eSDmitry Karpeev the subcomm viewer will attempt to inherit the viewer's name, which, if not set, will be constructed 18806b43e7eSDmitry Karpeev collectively on the comm. 18906b43e7eSDmitry Karpeev */ 1909566063dSJacob Faibussowitsch PetscCall(PetscObjectName((PetscObject)viewer)); 1919566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " Restriction/interpolation type: %s\n", PCGASMTypes[osm->type])); 1929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %s\n", overlap)); 1939566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %s\n", gsubdomains)); 1949566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %s\n", msubdomains)); 1959566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 19663a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, " [%d|%d] number of locally-supported subdomains = %" PetscInt_FMT "\n", rank, size, osm->n)); 1979566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 1989566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 1996a4f0f73SDmitry Karpeev /* Cannot take advantage of osm->same_subdomain_solvers without a global numbering of subdomains. */ 2009566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " Subdomain solver info is as follows:\n")); 2019566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushTab(viewer)); 2029566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " - - - - - - - - - - - - - - - - - -\n")); 20306b43e7eSDmitry Karpeev /* Make sure that everybody waits for the banner to be printed. */ 2049566063dSJacob Faibussowitsch PetscCallMPI(MPI_Barrier(PetscObjectComm((PetscObject)viewer))); 2054bde246dSDmitry Karpeev /* Now let subdomains go one at a time in the global numbering order and print their subdomain/solver info. */ 2069566063dSJacob Faibussowitsch PetscCall(PCGASMComputeGlobalSubdomainNumbering_Private(pc, &numbering, &permutation)); 20706b43e7eSDmitry Karpeev l = 0; 2088f3b4b4dSDmitry Karpeev for (count = 0; count < osm->N; ++count) { 20906b43e7eSDmitry Karpeev PetscMPIInt srank, ssize; 21006b43e7eSDmitry Karpeev if (l < osm->n) { 21106b43e7eSDmitry Karpeev PetscInt d = permutation[l]; /* d is the local number of the l-th smallest (in the global ordering) among the locally supported subdomains */ 21206b43e7eSDmitry Karpeev if (numbering[d] == count) { 2139566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(((PetscObject)osm->ois[d])->comm, &ssize)); 2149566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(((PetscObject)osm->ois[d])->comm, &srank)); 2159566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, ((PetscObject)osm->ois[d])->comm, &sviewer)); 2169566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(osm->ois[d], &bsz)); 21763a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(sviewer, " [%d|%d] (subcomm [%d|%d]) local subdomain number %" PetscInt_FMT ", local size = %" PetscInt_FMT "\n", rank, size, srank, ssize, d, bsz)); 2189566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(sviewer)); 2191baa6e33SBarry Smith if (view_subdomains) PetscCall(PCGASMSubdomainView_Private(pc, d, sviewer)); 2206a4f0f73SDmitry Karpeev if (!pc->setupcalled) { 2219566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(sviewer, " Solver not set up yet: PCSetUp() not yet called\n")); 2222fa5cd67SKarl Rupp } else { 2239566063dSJacob Faibussowitsch PetscCall(KSPView(osm->ksp[d], sviewer)); 2246a4f0f73SDmitry Karpeev } 2259566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(sviewer, " - - - - - - - - - - - - - - - - - -\n")); 2269566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(sviewer)); 2279566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, ((PetscObject)osm->ois[d])->comm, &sviewer)); 22806b43e7eSDmitry Karpeev ++l; 229b1a0a8a3SJed Brown } 23006b43e7eSDmitry Karpeev } 2319566063dSJacob Faibussowitsch PetscCallMPI(MPI_Barrier(PetscObjectComm((PetscObject)pc))); 232b1a0a8a3SJed Brown } 2339566063dSJacob Faibussowitsch PetscCall(PetscFree2(numbering, permutation)); 2349566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopTab(viewer)); 2359566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 2369530cbd7SBarry Smith /* this line is needed to match the extra PetscViewerASCIIPushSynchronized() in PetscViewerGetSubViewer() */ 2379566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 2389530cbd7SBarry Smith } 2393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 240b1a0a8a3SJed Brown } 241b1a0a8a3SJed Brown 2428f3b4b4dSDmitry Karpeev PETSC_INTERN PetscErrorCode PCGASMCreateLocalSubdomains(Mat A, PetscInt nloc, IS *iis[]); 243af538404SDmitry Karpeev 244d71ae5a4SJacob Faibussowitsch PetscErrorCode PCGASMSetHierarchicalPartitioning(PC pc) 245d71ae5a4SJacob Faibussowitsch { 246ea91fabdSFande Kong PC_GASM *osm = (PC_GASM *)pc->data; 247ea91fabdSFande Kong MatPartitioning part; 248ea91fabdSFande Kong MPI_Comm comm; 249ea91fabdSFande Kong PetscMPIInt size; 250ea91fabdSFande Kong PetscInt nlocalsubdomains, fromrows_localsize; 251ea91fabdSFande Kong IS partitioning, fromrows, isn; 252ea91fabdSFande Kong Vec outervec; 253ea91fabdSFande Kong 254ea91fabdSFande Kong PetscFunctionBegin; 2559566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)pc, &comm)); 2569566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 257ea91fabdSFande Kong /* we do not need a hierarchical partitioning when 258ea91fabdSFande Kong * the total number of subdomains is consistent with 259ea91fabdSFande Kong * the number of MPI tasks. 260ea91fabdSFande Kong * For the following cases, we do not need to use HP 261ea91fabdSFande Kong * */ 2623ba16761SJacob Faibussowitsch if (osm->N == PETSC_DETERMINE || osm->N >= size || osm->N == 1) PetscFunctionReturn(PETSC_SUCCESS); 263f1580f4eSBarry Smith PetscCheck(size % osm->N == 0, PETSC_COMM_WORLD, PETSC_ERR_ARG_INCOMP, "have to specify the total number of subdomains %" PetscInt_FMT " to be a factor of the number of ranks %d ", osm->N, size); 264ea91fabdSFande Kong nlocalsubdomains = size / osm->N; 265ea91fabdSFande Kong osm->n = 1; 2669566063dSJacob Faibussowitsch PetscCall(MatPartitioningCreate(comm, &part)); 2679566063dSJacob Faibussowitsch PetscCall(MatPartitioningSetAdjacency(part, pc->pmat)); 2689566063dSJacob Faibussowitsch PetscCall(MatPartitioningSetType(part, MATPARTITIONINGHIERARCH)); 2699566063dSJacob Faibussowitsch PetscCall(MatPartitioningHierarchicalSetNcoarseparts(part, osm->N)); 2709566063dSJacob Faibussowitsch PetscCall(MatPartitioningHierarchicalSetNfineparts(part, nlocalsubdomains)); 2719566063dSJacob Faibussowitsch PetscCall(MatPartitioningSetFromOptions(part)); 272f1580f4eSBarry Smith /* get new rank owner number of each vertex */ 2739566063dSJacob Faibussowitsch PetscCall(MatPartitioningApply(part, &partitioning)); 2749566063dSJacob Faibussowitsch PetscCall(ISBuildTwoSided(partitioning, NULL, &fromrows)); 2759566063dSJacob Faibussowitsch PetscCall(ISPartitioningToNumbering(partitioning, &isn)); 2769566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isn)); 2779566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(fromrows, &fromrows_localsize)); 2789566063dSJacob Faibussowitsch PetscCall(MatPartitioningDestroy(&part)); 2799566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(pc->pmat, &outervec, NULL)); 2809566063dSJacob Faibussowitsch PetscCall(VecCreateMPI(comm, fromrows_localsize, PETSC_DETERMINE, &(osm->pcx))); 2819566063dSJacob Faibussowitsch PetscCall(VecDuplicate(osm->pcx, &(osm->pcy))); 2829566063dSJacob Faibussowitsch PetscCall(VecScatterCreate(osm->pcx, NULL, outervec, fromrows, &(osm->pctoouter))); 2839566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(pc->pmat, fromrows, fromrows, MAT_INITIAL_MATRIX, &(osm->permutationP))); 2849566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fromrows)); 285ea91fabdSFande Kong osm->permutationIS = fromrows; 286ea91fabdSFande Kong osm->pcmat = pc->pmat; 2879566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)osm->permutationP)); 288ea91fabdSFande Kong pc->pmat = osm->permutationP; 2899566063dSJacob Faibussowitsch PetscCall(VecDestroy(&outervec)); 2909566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fromrows)); 2919566063dSJacob Faibussowitsch PetscCall(ISDestroy(&partitioning)); 292ea91fabdSFande Kong osm->n = PETSC_DETERMINE; 2933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 294ea91fabdSFande Kong } 295ea91fabdSFande Kong 296d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCSetUp_GASM(PC pc) 297d71ae5a4SJacob Faibussowitsch { 298f746d493SDmitry Karpeev PC_GASM *osm = (PC_GASM *)pc->data; 299ea91fabdSFande Kong PetscInt i, nInnerIndices, nTotalInnerIndices; 300c10bc1a1SDmitry Karpeev PetscMPIInt rank, size; 301b1a0a8a3SJed Brown MatReuse scall = MAT_REUSE_MATRIX; 302b1a0a8a3SJed Brown KSP ksp; 303b1a0a8a3SJed Brown PC subpc; 304b1a0a8a3SJed Brown const char *prefix, *pprefix; 305f746d493SDmitry Karpeev Vec x, y; 3066a4f0f73SDmitry Karpeev PetscInt oni; /* Number of indices in the i-th local outer subdomain. */ 3076a4f0f73SDmitry Karpeev const PetscInt *oidxi; /* Indices from the i-th subdomain local outer subdomain. */ 3086a4f0f73SDmitry Karpeev PetscInt on; /* Number of indices in the disjoint union of local outer subdomains. */ 3096a4f0f73SDmitry Karpeev PetscInt *oidx; /* Indices in the disjoint union of local outer subdomains. */ 3106a4f0f73SDmitry Karpeev IS gois; /* Disjoint union the global indices of outer subdomains. */ 3116a4f0f73SDmitry Karpeev IS goid; /* Identity IS of the size of the disjoint union of outer subdomains. */ 312f746d493SDmitry Karpeev PetscScalar *gxarray, *gyarray; 313930d09c1SFande Kong PetscInt gostart; /* Start of locally-owned indices in the vectors -- osm->gx,osm->gy -- over the disjoint union of outer subdomains. */ 3148f3b4b4dSDmitry Karpeev PetscInt num_subdomains = 0; 3150298fd71SBarry Smith DM *subdomain_dm = NULL; 3168f3b4b4dSDmitry Karpeev char **subdomain_names = NULL; 317f771a274SFande Kong PetscInt *numbering; 3188f3b4b4dSDmitry Karpeev 319b1a0a8a3SJed Brown PetscFunctionBegin; 3209566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)pc), &size)); 3219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)pc), &rank)); 322b1a0a8a3SJed Brown if (!pc->setupcalled) { 323ea91fabdSFande Kong /* use a hierarchical partitioning */ 3241baa6e33SBarry Smith if (osm->hierarchicalpartitioning) PetscCall(PCGASMSetHierarchicalPartitioning(pc)); 3258f3b4b4dSDmitry Karpeev if (osm->n == PETSC_DETERMINE) { 3268f3b4b4dSDmitry Karpeev if (osm->N != PETSC_DETERMINE) { 3278f3b4b4dSDmitry Karpeev /* No local subdomains given, but the desired number of total subdomains is known, so construct them accordingly. */ 3289566063dSJacob Faibussowitsch PetscCall(PCGASMCreateSubdomains(pc->pmat, osm->N, &osm->n, &osm->iis)); 3298f3b4b4dSDmitry Karpeev } else if (osm->dm_subdomains && pc->dm) { 3308f3b4b4dSDmitry Karpeev /* try pc->dm next, if allowed */ 3318f3b4b4dSDmitry Karpeev PetscInt d; 332a35b7b57SDmitry Karpeev IS *inner_subdomain_is, *outer_subdomain_is; 3339566063dSJacob Faibussowitsch PetscCall(DMCreateDomainDecomposition(pc->dm, &num_subdomains, &subdomain_names, &inner_subdomain_is, &outer_subdomain_is, &subdomain_dm)); 3341baa6e33SBarry Smith if (num_subdomains) PetscCall(PCGASMSetSubdomains(pc, num_subdomains, inner_subdomain_is, outer_subdomain_is)); 335a35b7b57SDmitry Karpeev for (d = 0; d < num_subdomains; ++d) { 3369566063dSJacob Faibussowitsch if (inner_subdomain_is) PetscCall(ISDestroy(&inner_subdomain_is[d])); 3379566063dSJacob Faibussowitsch if (outer_subdomain_is) PetscCall(ISDestroy(&outer_subdomain_is[d])); 338fdc48646SDmitry Karpeev } 3399566063dSJacob Faibussowitsch PetscCall(PetscFree(inner_subdomain_is)); 3409566063dSJacob Faibussowitsch PetscCall(PetscFree(outer_subdomain_is)); 3418f3b4b4dSDmitry Karpeev } else { 342f1580f4eSBarry Smith /* still no subdomains; use one per rank */ 34344fe18e5SDmitry Karpeev osm->nmax = osm->n = 1; 3449566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)pc), &size)); 345f746d493SDmitry Karpeev osm->N = size; 3469566063dSJacob Faibussowitsch PetscCall(PCGASMCreateLocalSubdomains(pc->pmat, osm->n, &osm->iis)); 347fdc48646SDmitry Karpeev } 34806b43e7eSDmitry Karpeev } 349a35b7b57SDmitry Karpeev if (!osm->iis) { 350a35b7b57SDmitry Karpeev /* 3518f3b4b4dSDmitry Karpeev osm->n was set in PCGASMSetSubdomains(), but the actual subdomains have not been supplied. 3528f3b4b4dSDmitry Karpeev We create the requisite number of local inner subdomains and then expand them into 3538f3b4b4dSDmitry Karpeev out subdomains, if necessary. 354a35b7b57SDmitry Karpeev */ 3559566063dSJacob Faibussowitsch PetscCall(PCGASMCreateLocalSubdomains(pc->pmat, osm->n, &osm->iis)); 356a35b7b57SDmitry Karpeev } 3578f3b4b4dSDmitry Karpeev if (!osm->ois) { 3588f3b4b4dSDmitry Karpeev /* 3598f3b4b4dSDmitry Karpeev Initially make outer subdomains the same as inner subdomains. If nonzero additional overlap 3608f3b4b4dSDmitry Karpeev has been requested, copy the inner subdomains over so they can be modified. 3618f3b4b4dSDmitry Karpeev */ 3629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(osm->n, &osm->ois)); 3638f3b4b4dSDmitry Karpeev for (i = 0; i < osm->n; ++i) { 364ea91fabdSFande Kong if (osm->overlap > 0 && osm->N > 1) { /* With positive overlap, osm->iis[i] will be modified */ 3659566063dSJacob Faibussowitsch PetscCall(ISDuplicate(osm->iis[i], (osm->ois) + i)); 3669566063dSJacob Faibussowitsch PetscCall(ISCopy(osm->iis[i], osm->ois[i])); 3678f3b4b4dSDmitry Karpeev } else { 3689566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)((osm->iis)[i]))); 3698f3b4b4dSDmitry Karpeev osm->ois[i] = osm->iis[i]; 3708f3b4b4dSDmitry Karpeev } 3718f3b4b4dSDmitry Karpeev } 372ea91fabdSFande Kong if (osm->overlap > 0 && osm->N > 1) { 3738f3b4b4dSDmitry Karpeev /* Extend the "overlapping" regions by a number of steps */ 3749566063dSJacob Faibussowitsch PetscCall(MatIncreaseOverlapSplit(pc->pmat, osm->n, osm->ois, osm->overlap)); 3758f3b4b4dSDmitry Karpeev } 376b1a0a8a3SJed Brown } 3776a4f0f73SDmitry Karpeev 3788f3b4b4dSDmitry Karpeev /* Now the subdomains are defined. Determine their global and max local numbers, if necessary. */ 3798f3b4b4dSDmitry Karpeev if (osm->nmax == PETSC_DETERMINE) { 3808f3b4b4dSDmitry Karpeev PetscMPIInt inwork, outwork; 3818f3b4b4dSDmitry Karpeev /* determine global number of subdomains and the max number of local subdomains */ 3828f3b4b4dSDmitry Karpeev inwork = osm->n; 3831c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&inwork, &outwork, 1, MPI_INT, MPI_MAX, PetscObjectComm((PetscObject)pc))); 3848f3b4b4dSDmitry Karpeev osm->nmax = outwork; 3858f3b4b4dSDmitry Karpeev } 3868f3b4b4dSDmitry Karpeev if (osm->N == PETSC_DETERMINE) { 3878f3b4b4dSDmitry Karpeev /* Determine the number of globally-distinct subdomains and compute a global numbering for them. */ 3889566063dSJacob Faibussowitsch PetscCall(PetscObjectsListGetGlobalNumbering(PetscObjectComm((PetscObject)pc), osm->n, (PetscObject *)osm->ois, &osm->N, NULL)); 3898f3b4b4dSDmitry Karpeev } 3908f3b4b4dSDmitry Karpeev 391b1a0a8a3SJed Brown if (osm->sort_indices) { 392f746d493SDmitry Karpeev for (i = 0; i < osm->n; i++) { 3939566063dSJacob Faibussowitsch PetscCall(ISSort(osm->ois[i])); 3949566063dSJacob Faibussowitsch PetscCall(ISSort(osm->iis[i])); 395b1a0a8a3SJed Brown } 396b1a0a8a3SJed Brown } 3979566063dSJacob Faibussowitsch PetscCall(PCGetOptionsPrefix(pc, &prefix)); 3989566063dSJacob Faibussowitsch PetscCall(PCGASMPrintSubdomains(pc)); 3998f3b4b4dSDmitry Karpeev 4006a4f0f73SDmitry Karpeev /* 4016a4f0f73SDmitry Karpeev Merge the ISs, create merged vectors and restrictions. 4026a4f0f73SDmitry Karpeev */ 4036a4f0f73SDmitry Karpeev /* Merge outer subdomain ISs and construct a restriction onto the disjoint union of local outer subdomains. */ 4046a4f0f73SDmitry Karpeev on = 0; 405f746d493SDmitry Karpeev for (i = 0; i < osm->n; i++) { 4069566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(osm->ois[i], &oni)); 4076a4f0f73SDmitry Karpeev on += oni; 408f746d493SDmitry Karpeev } 4099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(on, &oidx)); 4106a4f0f73SDmitry Karpeev on = 0; 411930d09c1SFande Kong /* Merge local indices together */ 412f746d493SDmitry Karpeev for (i = 0; i < osm->n; i++) { 4139566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(osm->ois[i], &oni)); 4149566063dSJacob Faibussowitsch PetscCall(ISGetIndices(osm->ois[i], &oidxi)); 4159566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(oidx + on, oidxi, oni)); 4169566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(osm->ois[i], &oidxi)); 4176a4f0f73SDmitry Karpeev on += oni; 418f746d493SDmitry Karpeev } 4199566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(((PetscObject)(pc))->comm, on, oidx, PETSC_OWN_POINTER, &gois)); 420ea91fabdSFande Kong nTotalInnerIndices = 0; 421ea91fabdSFande Kong for (i = 0; i < osm->n; i++) { 4229566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(osm->iis[i], &nInnerIndices)); 423ea91fabdSFande Kong nTotalInnerIndices += nInnerIndices; 424ea91fabdSFande Kong } 4259566063dSJacob Faibussowitsch PetscCall(VecCreateMPI(((PetscObject)(pc))->comm, nTotalInnerIndices, PETSC_DETERMINE, &x)); 4269566063dSJacob Faibussowitsch PetscCall(VecDuplicate(x, &y)); 427ea91fabdSFande Kong 4289566063dSJacob Faibussowitsch PetscCall(VecCreateMPI(PetscObjectComm((PetscObject)pc), on, PETSC_DECIDE, &osm->gx)); 4299566063dSJacob Faibussowitsch PetscCall(VecDuplicate(osm->gx, &osm->gy)); 4309566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(osm->gx, &gostart, NULL)); 4319566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)pc), on, gostart, 1, &goid)); 432930d09c1SFande Kong /* gois might indices not on local */ 4339566063dSJacob Faibussowitsch PetscCall(VecScatterCreate(x, gois, osm->gx, goid, &(osm->gorestriction))); 4349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(osm->n, &numbering)); 4359566063dSJacob Faibussowitsch PetscCall(PetscObjectsListGetGlobalNumbering(PetscObjectComm((PetscObject)pc), osm->n, (PetscObject *)osm->ois, NULL, numbering)); 4369566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 4379566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gois)); 4382fa5cd67SKarl Rupp 4396a4f0f73SDmitry Karpeev /* Merge inner subdomain ISs and construct a restriction onto the disjoint union of local inner subdomains. */ 4402fa5cd67SKarl Rupp { 4412fa5cd67SKarl Rupp PetscInt ini; /* Number of indices the i-th a local inner subdomain. */ 4428966356dSPierre Jolivet PetscInt in; /* Number of indices in the disjoint union of local inner subdomains. */ 4436a4f0f73SDmitry Karpeev PetscInt *iidx; /* Global indices in the merged local inner subdomain. */ 4446a4f0f73SDmitry Karpeev PetscInt *ioidx; /* Global indices of the disjoint union of inner subdomains within the disjoint union of outer subdomains. */ 4456a4f0f73SDmitry Karpeev IS giis; /* IS for the disjoint union of inner subdomains. */ 4466a4f0f73SDmitry Karpeev IS giois; /* IS for the disjoint union of inner subdomains within the disjoint union of outer subdomains. */ 447f771a274SFande Kong PetscScalar *array; 448f771a274SFande Kong const PetscInt *indices; 449f771a274SFande Kong PetscInt k; 4506a4f0f73SDmitry Karpeev on = 0; 451f746d493SDmitry Karpeev for (i = 0; i < osm->n; i++) { 4529566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(osm->ois[i], &oni)); 4536a4f0f73SDmitry Karpeev on += oni; 454f746d493SDmitry Karpeev } 4559566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(on, &iidx)); 4569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(on, &ioidx)); 4579566063dSJacob Faibussowitsch PetscCall(VecGetArray(y, &array)); 458e12b4729SFande Kong /* set communicator id to determine where overlap is */ 459f771a274SFande Kong in = 0; 460f771a274SFande Kong for (i = 0; i < osm->n; i++) { 4619566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(osm->iis[i], &ini)); 462ad540459SPierre Jolivet for (k = 0; k < ini; ++k) array[in + k] = numbering[i]; 463f771a274SFande Kong in += ini; 464f771a274SFande Kong } 4659566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(y, &array)); 4669566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(osm->gorestriction, y, osm->gy, INSERT_VALUES, SCATTER_FORWARD)); 4679566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(osm->gorestriction, y, osm->gy, INSERT_VALUES, SCATTER_FORWARD)); 4689566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(osm->gy, &gostart, NULL)); 4699566063dSJacob Faibussowitsch PetscCall(VecGetArray(osm->gy, &array)); 470f771a274SFande Kong on = 0; 471f771a274SFande Kong in = 0; 472f771a274SFande Kong for (i = 0; i < osm->n; i++) { 4739566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(osm->ois[i], &oni)); 4749566063dSJacob Faibussowitsch PetscCall(ISGetIndices(osm->ois[i], &indices)); 475f771a274SFande Kong for (k = 0; k < oni; k++) { 476e12b4729SFande Kong /* skip overlapping indices to get inner domain */ 47743081b6cSDmitry Karpeev if (PetscRealPart(array[on + k]) != numbering[i]) continue; 478f771a274SFande Kong iidx[in] = indices[k]; 479f771a274SFande Kong ioidx[in++] = gostart + on + k; 480f771a274SFande Kong } 4819566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(osm->ois[i], &indices)); 482f771a274SFande Kong on += oni; 483f771a274SFande Kong } 4849566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(osm->gy, &array)); 4859566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)pc), in, iidx, PETSC_OWN_POINTER, &giis)); 4869566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)pc), in, ioidx, PETSC_OWN_POINTER, &giois)); 4879566063dSJacob Faibussowitsch PetscCall(VecScatterCreate(y, giis, osm->gy, giois, &osm->girestriction)); 4889566063dSJacob Faibussowitsch PetscCall(VecDestroy(&y)); 4899566063dSJacob Faibussowitsch PetscCall(ISDestroy(&giis)); 4909566063dSJacob Faibussowitsch PetscCall(ISDestroy(&giois)); 491b1a0a8a3SJed Brown } 4929566063dSJacob Faibussowitsch PetscCall(ISDestroy(&goid)); 4939566063dSJacob Faibussowitsch PetscCall(PetscFree(numbering)); 4942fa5cd67SKarl Rupp 495f746d493SDmitry Karpeev /* Create the subdomain work vectors. */ 4969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(osm->n, &osm->x)); 4979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(osm->n, &osm->y)); 4989566063dSJacob Faibussowitsch PetscCall(VecGetArray(osm->gx, &gxarray)); 4999566063dSJacob Faibussowitsch PetscCall(VecGetArray(osm->gy, &gyarray)); 5006a4f0f73SDmitry Karpeev for (i = 0, on = 0; i < osm->n; ++i, on += oni) { 5016a4f0f73SDmitry Karpeev PetscInt oNi; 5029566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(osm->ois[i], &oni)); 503930d09c1SFande Kong /* on a sub communicator */ 5049566063dSJacob Faibussowitsch PetscCall(ISGetSize(osm->ois[i], &oNi)); 5059566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(((PetscObject)(osm->ois[i]))->comm, 1, oni, oNi, gxarray + on, &osm->x[i])); 5069566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(((PetscObject)(osm->ois[i]))->comm, 1, oni, oNi, gyarray + on, &osm->y[i])); 507b1a0a8a3SJed Brown } 5089566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(osm->gx, &gxarray)); 5099566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(osm->gy, &gyarray)); 5108f3b4b4dSDmitry Karpeev /* Create the subdomain solvers */ 5119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(osm->n, &osm->ksp)); 5128f3b4b4dSDmitry Karpeev for (i = 0; i < osm->n; i++) { 5138f3b4b4dSDmitry Karpeev char subprefix[PETSC_MAX_PATH_LEN + 1]; 5149566063dSJacob Faibussowitsch PetscCall(KSPCreate(((PetscObject)(osm->ois[i]))->comm, &ksp)); 5159566063dSJacob Faibussowitsch PetscCall(KSPSetErrorIfNotConverged(ksp, pc->erroriffailure)); 5169566063dSJacob Faibussowitsch PetscCall(PetscObjectIncrementTabLevel((PetscObject)ksp, (PetscObject)pc, 1)); 5179566063dSJacob Faibussowitsch PetscCall(KSPSetType(ksp, KSPPREONLY)); 5189566063dSJacob Faibussowitsch PetscCall(KSPGetPC(ksp, &subpc)); /* Why do we need this here? */ 5198f3b4b4dSDmitry Karpeev if (subdomain_dm) { 5209566063dSJacob Faibussowitsch PetscCall(KSPSetDM(ksp, subdomain_dm[i])); 5219566063dSJacob Faibussowitsch PetscCall(DMDestroy(subdomain_dm + i)); 5228f3b4b4dSDmitry Karpeev } 5239566063dSJacob Faibussowitsch PetscCall(PCGetOptionsPrefix(pc, &prefix)); 5249566063dSJacob Faibussowitsch PetscCall(KSPSetOptionsPrefix(ksp, prefix)); 5258f3b4b4dSDmitry Karpeev if (subdomain_names && subdomain_names[i]) { 5269566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(subprefix, PETSC_MAX_PATH_LEN, "sub_%s_", subdomain_names[i])); 5279566063dSJacob Faibussowitsch PetscCall(KSPAppendOptionsPrefix(ksp, subprefix)); 5289566063dSJacob Faibussowitsch PetscCall(PetscFree(subdomain_names[i])); 5298f3b4b4dSDmitry Karpeev } 5309566063dSJacob Faibussowitsch PetscCall(KSPAppendOptionsPrefix(ksp, "sub_")); 531b1a0a8a3SJed Brown osm->ksp[i] = ksp; 532b1a0a8a3SJed Brown } 5339566063dSJacob Faibussowitsch PetscCall(PetscFree(subdomain_dm)); 5349566063dSJacob Faibussowitsch PetscCall(PetscFree(subdomain_names)); 535b1a0a8a3SJed Brown scall = MAT_INITIAL_MATRIX; 5368f3b4b4dSDmitry Karpeev } else { /* if (pc->setupcalled) */ 537b1a0a8a3SJed Brown /* 5388f3b4b4dSDmitry Karpeev Destroy the submatrices from the previous iteration 539b1a0a8a3SJed Brown */ 540b1a0a8a3SJed Brown if (pc->flag == DIFFERENT_NONZERO_PATTERN) { 5419566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(osm->n, &osm->pmat)); 542b1a0a8a3SJed Brown scall = MAT_INITIAL_MATRIX; 543b1a0a8a3SJed Brown } 544ea91fabdSFande Kong if (osm->permutationIS) { 5459566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(pc->pmat, osm->permutationIS, osm->permutationIS, scall, &osm->permutationP)); 5469566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)osm->permutationP)); 547ea91fabdSFande Kong osm->pcmat = pc->pmat; 548ea91fabdSFande Kong pc->pmat = osm->permutationP; 549b1a0a8a3SJed Brown } 550ea91fabdSFande Kong } 551ea91fabdSFande Kong 552b1a0a8a3SJed Brown /* 5532da392ccSBarry Smith Extract the submatrices. 554b1a0a8a3SJed Brown */ 55581a5c4aaSDmitry Karpeev if (size > 1) { 5569566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatricesMPI(pc->pmat, osm->n, osm->ois, osm->ois, scall, &osm->pmat)); 5572fa5cd67SKarl Rupp } else { 5589566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(pc->pmat, osm->n, osm->ois, osm->ois, scall, &osm->pmat)); 55981a5c4aaSDmitry Karpeev } 560b1a0a8a3SJed Brown if (scall == MAT_INITIAL_MATRIX) { 5619566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)pc->pmat, &pprefix)); 562aa624791SPierre Jolivet for (i = 0; i < osm->n; i++) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)osm->pmat[i], pprefix)); 563b1a0a8a3SJed Brown } 564b1a0a8a3SJed Brown 565b1a0a8a3SJed Brown /* Return control to the user so that the submatrices can be modified (e.g., to apply 566b1a0a8a3SJed Brown different boundary conditions for the submatrices than for the global problem) */ 5679566063dSJacob Faibussowitsch PetscCall(PCModifySubMatrices(pc, osm->n, osm->ois, osm->ois, osm->pmat, pc->modifysubmatricesP)); 568b1a0a8a3SJed Brown 569b1a0a8a3SJed Brown /* 5706a4f0f73SDmitry Karpeev Loop over submatrices putting them into local ksps 571b1a0a8a3SJed Brown */ 572f746d493SDmitry Karpeev for (i = 0; i < osm->n; i++) { 5739566063dSJacob Faibussowitsch PetscCall(KSPSetOperators(osm->ksp[i], osm->pmat[i], osm->pmat[i])); 5749566063dSJacob Faibussowitsch PetscCall(KSPGetOptionsPrefix(osm->ksp[i], &prefix)); 5759566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(osm->pmat[i], prefix)); 57648a46eb9SPierre Jolivet if (!pc->setupcalled) PetscCall(KSPSetFromOptions(osm->ksp[i])); 577b1a0a8a3SJed Brown } 578ea91fabdSFande Kong if (osm->pcmat) { 5799566063dSJacob Faibussowitsch PetscCall(MatDestroy(&pc->pmat)); 580ea91fabdSFande Kong pc->pmat = osm->pcmat; 5810a545947SLisandro Dalcin osm->pcmat = NULL; 582ea91fabdSFande Kong } 5833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 584b1a0a8a3SJed Brown } 585b1a0a8a3SJed Brown 586d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCSetUpOnBlocks_GASM(PC pc) 587d71ae5a4SJacob Faibussowitsch { 588f746d493SDmitry Karpeev PC_GASM *osm = (PC_GASM *)pc->data; 589b1a0a8a3SJed Brown PetscInt i; 590b1a0a8a3SJed Brown 591b1a0a8a3SJed Brown PetscFunctionBegin; 59248a46eb9SPierre Jolivet for (i = 0; i < osm->n; i++) PetscCall(KSPSetUp(osm->ksp[i])); 5933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 594b1a0a8a3SJed Brown } 595b1a0a8a3SJed Brown 596d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCApply_GASM(PC pc, Vec xin, Vec yout) 597d71ae5a4SJacob Faibussowitsch { 598f746d493SDmitry Karpeev PC_GASM *osm = (PC_GASM *)pc->data; 599f746d493SDmitry Karpeev PetscInt i; 600ea91fabdSFande Kong Vec x, y; 601b1a0a8a3SJed Brown ScatterMode forward = SCATTER_FORWARD, reverse = SCATTER_REVERSE; 602b1a0a8a3SJed Brown 603b1a0a8a3SJed Brown PetscFunctionBegin; 604ea91fabdSFande Kong if (osm->pctoouter) { 6059566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(osm->pctoouter, xin, osm->pcx, INSERT_VALUES, SCATTER_REVERSE)); 6069566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(osm->pctoouter, xin, osm->pcx, INSERT_VALUES, SCATTER_REVERSE)); 607ea91fabdSFande Kong x = osm->pcx; 608ea91fabdSFande Kong y = osm->pcy; 609ea91fabdSFande Kong } else { 610ea91fabdSFande Kong x = xin; 611ea91fabdSFande Kong y = yout; 612ea91fabdSFande Kong } 613b1a0a8a3SJed Brown /* 61448e38a8aSPierre Jolivet support for limiting the restriction or interpolation only to the inner 615b1a0a8a3SJed Brown subdomain values (leaving the other values 0). 616b1a0a8a3SJed Brown */ 617f746d493SDmitry Karpeev if (!(osm->type & PC_GASM_RESTRICT)) { 618b1a0a8a3SJed Brown /* have to zero the work RHS since scatter may leave some slots empty */ 6199566063dSJacob Faibussowitsch PetscCall(VecZeroEntries(osm->gx)); 6209566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(osm->girestriction, x, osm->gx, INSERT_VALUES, forward)); 6212fa5cd67SKarl Rupp } else { 6229566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(osm->gorestriction, x, osm->gx, INSERT_VALUES, forward)); 623b1a0a8a3SJed Brown } 6249566063dSJacob Faibussowitsch PetscCall(VecZeroEntries(osm->gy)); 6256a4f0f73SDmitry Karpeev if (!(osm->type & PC_GASM_RESTRICT)) { 6269566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(osm->girestriction, x, osm->gx, INSERT_VALUES, forward)); 6272fa5cd67SKarl Rupp } else { 6289566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(osm->gorestriction, x, osm->gx, INSERT_VALUES, forward)); 6296a4f0f73SDmitry Karpeev } 63086b96d36SDmitry Karpeev /* do the subdomain solves */ 63186b96d36SDmitry Karpeev for (i = 0; i < osm->n; ++i) { 6329566063dSJacob Faibussowitsch PetscCall(KSPSolve(osm->ksp[i], osm->x[i], osm->y[i])); 6339566063dSJacob Faibussowitsch PetscCall(KSPCheckSolve(osm->ksp[i], pc, osm->y[i])); 634b1a0a8a3SJed Brown } 63548e38a8aSPierre Jolivet /* do we need to zero y? */ 6369566063dSJacob Faibussowitsch PetscCall(VecZeroEntries(y)); 6376a4f0f73SDmitry Karpeev if (!(osm->type & PC_GASM_INTERPOLATE)) { 6389566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(osm->girestriction, osm->gy, y, ADD_VALUES, reverse)); 6399566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(osm->girestriction, osm->gy, y, ADD_VALUES, reverse)); 6402fa5cd67SKarl Rupp } else { 6419566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(osm->gorestriction, osm->gy, y, ADD_VALUES, reverse)); 6429566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(osm->gorestriction, osm->gy, y, ADD_VALUES, reverse)); 6436a4f0f73SDmitry Karpeev } 644ea91fabdSFande Kong if (osm->pctoouter) { 6459566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(osm->pctoouter, y, yout, INSERT_VALUES, SCATTER_FORWARD)); 6469566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(osm->pctoouter, y, yout, INSERT_VALUES, SCATTER_FORWARD)); 647ea91fabdSFande Kong } 6483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 649b1a0a8a3SJed Brown } 650b1a0a8a3SJed Brown 651d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCMatApply_GASM(PC pc, Mat Xin, Mat Yout) 652d71ae5a4SJacob Faibussowitsch { 65348e38a8aSPierre Jolivet PC_GASM *osm = (PC_GASM *)pc->data; 65448e38a8aSPierre Jolivet Mat X, Y, O = NULL, Z, W; 65548e38a8aSPierre Jolivet Vec x, y; 65648e38a8aSPierre Jolivet PetscInt i, m, M, N; 65748e38a8aSPierre Jolivet ScatterMode forward = SCATTER_FORWARD, reverse = SCATTER_REVERSE; 65848e38a8aSPierre Jolivet 65948e38a8aSPierre Jolivet PetscFunctionBegin; 66008401ef6SPierre Jolivet PetscCheck(osm->n == 1, PetscObjectComm((PetscObject)pc), PETSC_ERR_SUP, "Not yet implemented"); 6619566063dSJacob Faibussowitsch PetscCall(MatGetSize(Xin, NULL, &N)); 66248e38a8aSPierre Jolivet if (osm->pctoouter) { 6639566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(osm->pcx, &m)); 6649566063dSJacob Faibussowitsch PetscCall(VecGetSize(osm->pcx, &M)); 6659566063dSJacob Faibussowitsch PetscCall(MatCreateDense(PetscObjectComm((PetscObject)osm->ois[0]), m, PETSC_DECIDE, M, N, NULL, &O)); 66648e38a8aSPierre Jolivet for (i = 0; i < N; ++i) { 6679566063dSJacob Faibussowitsch PetscCall(MatDenseGetColumnVecRead(Xin, i, &x)); 6689566063dSJacob Faibussowitsch PetscCall(MatDenseGetColumnVecWrite(O, i, &y)); 6699566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(osm->pctoouter, x, y, INSERT_VALUES, SCATTER_REVERSE)); 6709566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(osm->pctoouter, x, y, INSERT_VALUES, SCATTER_REVERSE)); 6719566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreColumnVecWrite(O, i, &y)); 6729566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreColumnVecRead(Xin, i, &x)); 67348e38a8aSPierre Jolivet } 67448e38a8aSPierre Jolivet X = Y = O; 67548e38a8aSPierre Jolivet } else { 67648e38a8aSPierre Jolivet X = Xin; 67748e38a8aSPierre Jolivet Y = Yout; 67848e38a8aSPierre Jolivet } 67948e38a8aSPierre Jolivet /* 68048e38a8aSPierre Jolivet support for limiting the restriction or interpolation only to the inner 68148e38a8aSPierre Jolivet subdomain values (leaving the other values 0). 68248e38a8aSPierre Jolivet */ 6839566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(osm->x[0], &m)); 6849566063dSJacob Faibussowitsch PetscCall(VecGetSize(osm->x[0], &M)); 6859566063dSJacob Faibussowitsch PetscCall(MatCreateDense(PetscObjectComm((PetscObject)osm->ois[0]), m, PETSC_DECIDE, M, N, NULL, &Z)); 68648e38a8aSPierre Jolivet for (i = 0; i < N; ++i) { 6879566063dSJacob Faibussowitsch PetscCall(MatDenseGetColumnVecRead(X, i, &x)); 6889566063dSJacob Faibussowitsch PetscCall(MatDenseGetColumnVecWrite(Z, i, &y)); 68948e38a8aSPierre Jolivet if (!(osm->type & PC_GASM_RESTRICT)) { 69048e38a8aSPierre Jolivet /* have to zero the work RHS since scatter may leave some slots empty */ 6919566063dSJacob Faibussowitsch PetscCall(VecZeroEntries(y)); 6929566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(osm->girestriction, x, y, INSERT_VALUES, forward)); 6939566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(osm->girestriction, x, y, INSERT_VALUES, forward)); 69448e38a8aSPierre Jolivet } else { 6959566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(osm->gorestriction, x, y, INSERT_VALUES, forward)); 6969566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(osm->gorestriction, x, y, INSERT_VALUES, forward)); 69748e38a8aSPierre Jolivet } 6989566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreColumnVecWrite(Z, i, &y)); 6999566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreColumnVecRead(X, i, &x)); 70048e38a8aSPierre Jolivet } 7019566063dSJacob Faibussowitsch PetscCall(MatCreateDense(PetscObjectComm((PetscObject)osm->ois[0]), m, PETSC_DECIDE, M, N, NULL, &W)); 7029566063dSJacob Faibussowitsch PetscCall(MatSetOption(Z, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 7039566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Z, MAT_FINAL_ASSEMBLY)); 7049566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Z, MAT_FINAL_ASSEMBLY)); 70548e38a8aSPierre Jolivet /* do the subdomain solve */ 7069566063dSJacob Faibussowitsch PetscCall(KSPMatSolve(osm->ksp[0], Z, W)); 7079566063dSJacob Faibussowitsch PetscCall(KSPCheckSolve(osm->ksp[0], pc, NULL)); 7089566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Z)); 70948e38a8aSPierre Jolivet /* do we need to zero y? */ 7109566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(Y)); 71148e38a8aSPierre Jolivet for (i = 0; i < N; ++i) { 7129566063dSJacob Faibussowitsch PetscCall(MatDenseGetColumnVecWrite(Y, i, &y)); 7139566063dSJacob Faibussowitsch PetscCall(MatDenseGetColumnVecRead(W, i, &x)); 71448e38a8aSPierre Jolivet if (!(osm->type & PC_GASM_INTERPOLATE)) { 7159566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(osm->girestriction, x, y, ADD_VALUES, reverse)); 7169566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(osm->girestriction, x, y, ADD_VALUES, reverse)); 71748e38a8aSPierre Jolivet } else { 7189566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(osm->gorestriction, x, y, ADD_VALUES, reverse)); 7199566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(osm->gorestriction, x, y, ADD_VALUES, reverse)); 72048e38a8aSPierre Jolivet } 7219566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreColumnVecRead(W, i, &x)); 72248e38a8aSPierre Jolivet if (osm->pctoouter) { 7239566063dSJacob Faibussowitsch PetscCall(MatDenseGetColumnVecWrite(Yout, i, &x)); 7249566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(osm->pctoouter, y, x, INSERT_VALUES, SCATTER_FORWARD)); 7259566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(osm->pctoouter, y, x, INSERT_VALUES, SCATTER_FORWARD)); 7269566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreColumnVecRead(Yout, i, &x)); 72748e38a8aSPierre Jolivet } 7289566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreColumnVecWrite(Y, i, &y)); 72948e38a8aSPierre Jolivet } 7309566063dSJacob Faibussowitsch PetscCall(MatDestroy(&W)); 7319566063dSJacob Faibussowitsch PetscCall(MatDestroy(&O)); 7323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 73348e38a8aSPierre Jolivet } 73448e38a8aSPierre Jolivet 735d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCApplyTranspose_GASM(PC pc, Vec xin, Vec yout) 736d71ae5a4SJacob Faibussowitsch { 737f746d493SDmitry Karpeev PC_GASM *osm = (PC_GASM *)pc->data; 738f746d493SDmitry Karpeev PetscInt i; 739ea91fabdSFande Kong Vec x, y; 740b1a0a8a3SJed Brown ScatterMode forward = SCATTER_FORWARD, reverse = SCATTER_REVERSE; 741b1a0a8a3SJed Brown 742b1a0a8a3SJed Brown PetscFunctionBegin; 743ea91fabdSFande Kong if (osm->pctoouter) { 7449566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(osm->pctoouter, xin, osm->pcx, INSERT_VALUES, SCATTER_REVERSE)); 7459566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(osm->pctoouter, xin, osm->pcx, INSERT_VALUES, SCATTER_REVERSE)); 746ea91fabdSFande Kong x = osm->pcx; 747ea91fabdSFande Kong y = osm->pcy; 748ea91fabdSFande Kong } else { 749ea91fabdSFande Kong x = xin; 750ea91fabdSFande Kong y = yout; 751ea91fabdSFande Kong } 752b1a0a8a3SJed Brown /* 753b1a0a8a3SJed Brown Support for limiting the restriction or interpolation to only local 754b1a0a8a3SJed Brown subdomain values (leaving the other values 0). 755b1a0a8a3SJed Brown 756f746d493SDmitry Karpeev Note: these are reversed from the PCApply_GASM() because we are applying the 757b1a0a8a3SJed Brown transpose of the three terms 758b1a0a8a3SJed Brown */ 759f746d493SDmitry Karpeev if (!(osm->type & PC_GASM_INTERPOLATE)) { 760b1a0a8a3SJed Brown /* have to zero the work RHS since scatter may leave some slots empty */ 7619566063dSJacob Faibussowitsch PetscCall(VecZeroEntries(osm->gx)); 7629566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(osm->girestriction, x, osm->gx, INSERT_VALUES, forward)); 7632fa5cd67SKarl Rupp } else { 7649566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(osm->gorestriction, x, osm->gx, INSERT_VALUES, forward)); 765b1a0a8a3SJed Brown } 7669566063dSJacob Faibussowitsch PetscCall(VecZeroEntries(osm->gy)); 7676a4f0f73SDmitry Karpeev if (!(osm->type & PC_GASM_INTERPOLATE)) { 7689566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(osm->girestriction, x, osm->gx, INSERT_VALUES, forward)); 7692fa5cd67SKarl Rupp } else { 7709566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(osm->gorestriction, x, osm->gx, INSERT_VALUES, forward)); 7716a4f0f73SDmitry Karpeev } 772b1a0a8a3SJed Brown /* do the local solves */ 773ab3e923fSDmitry Karpeev for (i = 0; i < osm->n; ++i) { /* Note that the solves are local, so we can go to osm->n, rather than osm->nmax. */ 7749566063dSJacob Faibussowitsch PetscCall(KSPSolveTranspose(osm->ksp[i], osm->x[i], osm->y[i])); 7759566063dSJacob Faibussowitsch PetscCall(KSPCheckSolve(osm->ksp[i], pc, osm->y[i])); 776b1a0a8a3SJed Brown } 7779566063dSJacob Faibussowitsch PetscCall(VecZeroEntries(y)); 7786a4f0f73SDmitry Karpeev if (!(osm->type & PC_GASM_RESTRICT)) { 7799566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(osm->girestriction, osm->gy, y, ADD_VALUES, reverse)); 7809566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(osm->girestriction, osm->gy, y, ADD_VALUES, reverse)); 7812fa5cd67SKarl Rupp } else { 7829566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(osm->gorestriction, osm->gy, y, ADD_VALUES, reverse)); 7839566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(osm->gorestriction, osm->gy, y, ADD_VALUES, reverse)); 7846a4f0f73SDmitry Karpeev } 785ea91fabdSFande Kong if (osm->pctoouter) { 7869566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(osm->pctoouter, y, yout, INSERT_VALUES, SCATTER_FORWARD)); 7879566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(osm->pctoouter, y, yout, INSERT_VALUES, SCATTER_FORWARD)); 788ea91fabdSFande Kong } 7893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 790b1a0a8a3SJed Brown } 791b1a0a8a3SJed Brown 792d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCReset_GASM(PC pc) 793d71ae5a4SJacob Faibussowitsch { 794f746d493SDmitry Karpeev PC_GASM *osm = (PC_GASM *)pc->data; 795b1a0a8a3SJed Brown PetscInt i; 796b1a0a8a3SJed Brown 797b1a0a8a3SJed Brown PetscFunctionBegin; 798b1a0a8a3SJed Brown if (osm->ksp) { 79948a46eb9SPierre Jolivet for (i = 0; i < osm->n; i++) PetscCall(KSPReset(osm->ksp[i])); 800b1a0a8a3SJed Brown } 801b1a0a8a3SJed Brown if (osm->pmat) { 802f746d493SDmitry Karpeev if (osm->n > 0) { 803df750dc8SHong Zhang PetscMPIInt size; 8049566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)pc), &size)); 805df750dc8SHong Zhang if (size > 1) { 8067dae84e0SHong Zhang /* osm->pmat is created by MatCreateSubMatricesMPI(), cannot use MatDestroySubMatrices() */ 8079566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(osm->n, &osm->pmat)); 808df750dc8SHong Zhang } else { 8099566063dSJacob Faibussowitsch PetscCall(MatDestroySubMatrices(osm->n, &osm->pmat)); 810df750dc8SHong Zhang } 811b1a0a8a3SJed Brown } 812b1a0a8a3SJed Brown } 813d34fcf5fSBarry Smith if (osm->x) { 814f746d493SDmitry Karpeev for (i = 0; i < osm->n; i++) { 8159566063dSJacob Faibussowitsch PetscCall(VecDestroy(&osm->x[i])); 8169566063dSJacob Faibussowitsch PetscCall(VecDestroy(&osm->y[i])); 817b1a0a8a3SJed Brown } 818d34fcf5fSBarry Smith } 8199566063dSJacob Faibussowitsch PetscCall(VecDestroy(&osm->gx)); 8209566063dSJacob Faibussowitsch PetscCall(VecDestroy(&osm->gy)); 821ab3e923fSDmitry Karpeev 8229566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&osm->gorestriction)); 8239566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&osm->girestriction)); 8248f3b4b4dSDmitry Karpeev if (!osm->user_subdomains) { 8259566063dSJacob Faibussowitsch PetscCall(PCGASMDestroySubdomains(osm->n, &osm->ois, &osm->iis)); 8268f3b4b4dSDmitry Karpeev osm->N = PETSC_DETERMINE; 8278f3b4b4dSDmitry Karpeev osm->nmax = PETSC_DETERMINE; 8288f3b4b4dSDmitry Karpeev } 82948a46eb9SPierre Jolivet if (osm->pctoouter) PetscCall(VecScatterDestroy(&(osm->pctoouter))); 83048a46eb9SPierre Jolivet if (osm->permutationIS) PetscCall(ISDestroy(&(osm->permutationIS))); 83148a46eb9SPierre Jolivet if (osm->pcx) PetscCall(VecDestroy(&(osm->pcx))); 83248a46eb9SPierre Jolivet if (osm->pcy) PetscCall(VecDestroy(&(osm->pcy))); 83348a46eb9SPierre Jolivet if (osm->permutationP) PetscCall(MatDestroy(&(osm->permutationP))); 83448a46eb9SPierre Jolivet if (osm->pcmat) PetscCall(MatDestroy(&osm->pcmat)); 8353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 836a06653b4SBarry Smith } 837a06653b4SBarry Smith 838d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCDestroy_GASM(PC pc) 839d71ae5a4SJacob Faibussowitsch { 840a06653b4SBarry Smith PC_GASM *osm = (PC_GASM *)pc->data; 841a06653b4SBarry Smith PetscInt i; 842a06653b4SBarry Smith 843a06653b4SBarry Smith PetscFunctionBegin; 8449566063dSJacob Faibussowitsch PetscCall(PCReset_GASM(pc)); 845135757f6SDmitry Karpeev /* PCReset will not destroy subdomains, if user_subdomains is true. */ 8469566063dSJacob Faibussowitsch PetscCall(PCGASMDestroySubdomains(osm->n, &osm->ois, &osm->iis)); 847a06653b4SBarry Smith if (osm->ksp) { 84848a46eb9SPierre Jolivet for (i = 0; i < osm->n; i++) PetscCall(KSPDestroy(&osm->ksp[i])); 8499566063dSJacob Faibussowitsch PetscCall(PetscFree(osm->ksp)); 850a06653b4SBarry Smith } 8519566063dSJacob Faibussowitsch PetscCall(PetscFree(osm->x)); 8529566063dSJacob Faibussowitsch PetscCall(PetscFree(osm->y)); 8532e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)pc, "PCGASMSetSubdomains_C", NULL)); 8542e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)pc, "PCGASMSetOverlap_C", NULL)); 8552e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)pc, "PCGASMSetType_C", NULL)); 8562e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)pc, "PCGASMSetSortIndices_C", NULL)); 8572e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)pc, "PCGASMGetSubKSP_C", NULL)); 8589566063dSJacob Faibussowitsch PetscCall(PetscFree(pc->data)); 8593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 860b1a0a8a3SJed Brown } 861b1a0a8a3SJed Brown 862d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCSetFromOptions_GASM(PC pc, PetscOptionItems *PetscOptionsObject) 863d71ae5a4SJacob Faibussowitsch { 864f746d493SDmitry Karpeev PC_GASM *osm = (PC_GASM *)pc->data; 865b1a0a8a3SJed Brown PetscInt blocks, ovl; 86657501b6eSBarry Smith PetscBool flg; 867f746d493SDmitry Karpeev PCGASMType gasmtype; 868b1a0a8a3SJed Brown 869b1a0a8a3SJed Brown PetscFunctionBegin; 870d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "Generalized additive Schwarz options"); 8719566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-pc_gasm_use_dm_subdomains", "If subdomains aren't set, use DMCreateDomainDecomposition() to define subdomains.", "PCGASMSetUseDMSubdomains", osm->dm_subdomains, &osm->dm_subdomains, &flg)); 8729566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-pc_gasm_total_subdomains", "Total number of subdomains across communicator", "PCGASMSetTotalSubdomains", osm->N, &blocks, &flg)); 8731baa6e33SBarry Smith if (flg) PetscCall(PCGASMSetTotalSubdomains(pc, blocks)); 8749566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-pc_gasm_overlap", "Number of overlapping degrees of freedom", "PCGASMSetOverlap", osm->overlap, &ovl, &flg)); 87565db9045SDmitry Karpeev if (flg) { 8769566063dSJacob Faibussowitsch PetscCall(PCGASMSetOverlap(pc, ovl)); 877d709ea83SDmitry Karpeev osm->dm_subdomains = PETSC_FALSE; 87865db9045SDmitry Karpeev } 879b1a0a8a3SJed Brown flg = PETSC_FALSE; 8809566063dSJacob Faibussowitsch PetscCall(PetscOptionsEnum("-pc_gasm_type", "Type of restriction/extension", "PCGASMSetType", PCGASMTypes, (PetscEnum)osm->type, (PetscEnum *)&gasmtype, &flg)); 8819566063dSJacob Faibussowitsch if (flg) PetscCall(PCGASMSetType(pc, gasmtype)); 8829566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-pc_gasm_use_hierachical_partitioning", "use hierarchical partitioning", NULL, osm->hierarchicalpartitioning, &osm->hierarchicalpartitioning, &flg)); 883d0609cedSBarry Smith PetscOptionsHeadEnd(); 8843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 885b1a0a8a3SJed Brown } 886b1a0a8a3SJed Brown 887b1a0a8a3SJed Brown /*------------------------------------------------------------------------------------*/ 888b1a0a8a3SJed Brown 8898f3b4b4dSDmitry Karpeev /*@ 890f1580f4eSBarry Smith PCGASMSetTotalSubdomains - sets the total number of subdomains to use across the communicator for `PCGASM` 891c3339decSBarry Smith 892c3339decSBarry Smith Logically Collective 8938f3b4b4dSDmitry Karpeev 8948f3b4b4dSDmitry Karpeev Input Parameters: 8958f3b4b4dSDmitry Karpeev + pc - the preconditioner 8968f3b4b4dSDmitry Karpeev - N - total number of subdomains 8978f3b4b4dSDmitry Karpeev 8988f3b4b4dSDmitry Karpeev Level: beginner 8998f3b4b4dSDmitry Karpeev 900f1580f4eSBarry Smith .seealso: `PCGASM`, `PCGASMSetSubdomains()`, `PCGASMSetOverlap()` 901db781477SPatrick Sanan `PCGASMCreateSubdomains2D()` 9028f3b4b4dSDmitry Karpeev @*/ 903d71ae5a4SJacob Faibussowitsch PetscErrorCode PCGASMSetTotalSubdomains(PC pc, PetscInt N) 904d71ae5a4SJacob Faibussowitsch { 9058f3b4b4dSDmitry Karpeev PC_GASM *osm = (PC_GASM *)pc->data; 9068f3b4b4dSDmitry Karpeev PetscMPIInt size, rank; 9078f3b4b4dSDmitry Karpeev 9088f3b4b4dSDmitry Karpeev PetscFunctionBegin; 90963a3b9bcSJacob Faibussowitsch PetscCheck(N >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Total number of subdomains must be 1 or more, got N = %" PetscInt_FMT, N); 91028b400f6SJacob Faibussowitsch PetscCheck(!pc->setupcalled, PetscObjectComm((PetscObject)pc), PETSC_ERR_ARG_WRONGSTATE, "PCGASMSetTotalSubdomains() should be called before calling PCSetUp()."); 9118f3b4b4dSDmitry Karpeev 9129566063dSJacob Faibussowitsch PetscCall(PCGASMDestroySubdomains(osm->n, &osm->iis, &osm->ois)); 9138f3b4b4dSDmitry Karpeev osm->ois = osm->iis = NULL; 9148f3b4b4dSDmitry Karpeev 9159566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)pc), &size)); 9169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)pc), &rank)); 9178f3b4b4dSDmitry Karpeev osm->N = N; 9188f3b4b4dSDmitry Karpeev osm->n = PETSC_DETERMINE; 9198f3b4b4dSDmitry Karpeev osm->nmax = PETSC_DETERMINE; 9208f3b4b4dSDmitry Karpeev osm->dm_subdomains = PETSC_FALSE; 9213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9228f3b4b4dSDmitry Karpeev } 9238f3b4b4dSDmitry Karpeev 924d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCGASMSetSubdomains_GASM(PC pc, PetscInt n, IS iis[], IS ois[]) 925d71ae5a4SJacob Faibussowitsch { 926f746d493SDmitry Karpeev PC_GASM *osm = (PC_GASM *)pc->data; 927b1a0a8a3SJed Brown PetscInt i; 928b1a0a8a3SJed Brown 929b1a0a8a3SJed Brown PetscFunctionBegin; 930f1580f4eSBarry Smith PetscCheck(n >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Each MPI rank must have 1 or more subdomains, got n = %" PetscInt_FMT, n); 93128b400f6SJacob Faibussowitsch PetscCheck(!pc->setupcalled, PetscObjectComm((PetscObject)pc), PETSC_ERR_ARG_WRONGSTATE, "PCGASMSetSubdomains() should be called before calling PCSetUp()."); 932b1a0a8a3SJed Brown 9339566063dSJacob Faibussowitsch PetscCall(PCGASMDestroySubdomains(osm->n, &osm->iis, &osm->ois)); 9348f3b4b4dSDmitry Karpeev osm->iis = osm->ois = NULL; 9358f3b4b4dSDmitry Karpeev osm->n = n; 9368f3b4b4dSDmitry Karpeev osm->N = PETSC_DETERMINE; 9378f3b4b4dSDmitry Karpeev osm->nmax = PETSC_DETERMINE; 938a35b7b57SDmitry Karpeev if (ois) { 9399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &osm->ois)); 9408f3b4b4dSDmitry Karpeev for (i = 0; i < n; i++) { 9419566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ois[i])); 9428f3b4b4dSDmitry Karpeev osm->ois[i] = ois[i]; 9438f3b4b4dSDmitry Karpeev } 9448f3b4b4dSDmitry Karpeev /* 9458f3b4b4dSDmitry Karpeev Since the user set the outer subdomains, even if nontrivial overlap was requested via PCGASMSetOverlap(), 9468f3b4b4dSDmitry Karpeev it will be ignored. To avoid confusion later on (e.g., when viewing the PC), the overlap size is set to -1. 9478f3b4b4dSDmitry Karpeev */ 948b1a0a8a3SJed Brown osm->overlap = -1; 949670417b2SFande Kong /* inner subdomains must be provided */ 95028b400f6SJacob Faibussowitsch PetscCheck(iis, PETSC_COMM_SELF, PETSC_ERR_ARG_NULL, "inner indices have to be provided "); 951670417b2SFande Kong } /* end if */ 952a35b7b57SDmitry Karpeev if (iis) { 9539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &osm->iis)); 9548f3b4b4dSDmitry Karpeev for (i = 0; i < n; i++) { 9559566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)iis[i])); 9568f3b4b4dSDmitry Karpeev osm->iis[i] = iis[i]; 9578f3b4b4dSDmitry Karpeev } 958a35b7b57SDmitry Karpeev if (!ois) { 959390e1bf2SBarry Smith osm->ois = NULL; 960670417b2SFande Kong /* if user does not provide outer indices, we will create the corresponding outer indices using osm->overlap =1 in PCSetUp_GASM */ 961670417b2SFande Kong } 962670417b2SFande Kong } 96376bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 964670417b2SFande Kong PetscInt j, rstart, rend, *covered, lsize; 965670417b2SFande Kong const PetscInt *indices; 966670417b2SFande Kong /* check if the inner indices cover and only cover the local portion of the preconditioning matrix */ 9679566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(pc->pmat, &rstart, &rend)); 9689566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(rend - rstart, &covered)); 969f1580f4eSBarry Smith /* check if the current MPI rank owns indices from others */ 970a35b7b57SDmitry Karpeev for (i = 0; i < n; i++) { 9719566063dSJacob Faibussowitsch PetscCall(ISGetIndices(osm->iis[i], &indices)); 9729566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(osm->iis[i], &lsize)); 973670417b2SFande Kong for (j = 0; j < lsize; j++) { 974f1580f4eSBarry Smith PetscCheck(indices[j] >= rstart && indices[j] < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "inner subdomains can not own an index %" PetscInt_FMT " from other ranks", indices[j]); 9752472a847SBarry Smith PetscCheck(covered[indices[j] - rstart] != 1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "inner subdomains can not have an overlapping index %" PetscInt_FMT " ", indices[j]); 97663a3b9bcSJacob Faibussowitsch covered[indices[j] - rstart] = 1; 977a35b7b57SDmitry Karpeev } 9789566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(osm->iis[i], &indices)); 9798f3b4b4dSDmitry Karpeev } 980670417b2SFande Kong /* check if we miss any indices */ 981ad540459SPierre Jolivet for (i = rstart; i < rend; i++) PetscCheck(covered[i - rstart], PETSC_COMM_SELF, PETSC_ERR_ARG_NULL, "local entity %" PetscInt_FMT " was not covered by inner subdomains", i); 9829566063dSJacob Faibussowitsch PetscCall(PetscFree(covered)); 983a35b7b57SDmitry Karpeev } 9848f3b4b4dSDmitry Karpeev if (iis) osm->user_subdomains = PETSC_TRUE; 9853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 986b1a0a8a3SJed Brown } 987b1a0a8a3SJed Brown 988d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCGASMSetOverlap_GASM(PC pc, PetscInt ovl) 989d71ae5a4SJacob Faibussowitsch { 990f746d493SDmitry Karpeev PC_GASM *osm = (PC_GASM *)pc->data; 991b1a0a8a3SJed Brown 992b1a0a8a3SJed Brown PetscFunctionBegin; 99308401ef6SPierre Jolivet PetscCheck(ovl >= 0, PetscObjectComm((PetscObject)pc), PETSC_ERR_ARG_OUTOFRANGE, "Negative overlap value requested"); 9942472a847SBarry Smith PetscCheck(!pc->setupcalled || ovl == osm->overlap, PetscObjectComm((PetscObject)pc), PETSC_ERR_ARG_WRONGSTATE, "PCGASMSetOverlap() should be called before PCSetUp()."); 9952fa5cd67SKarl Rupp if (!pc->setupcalled) osm->overlap = ovl; 9963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 997b1a0a8a3SJed Brown } 998b1a0a8a3SJed Brown 999d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCGASMSetType_GASM(PC pc, PCGASMType type) 1000d71ae5a4SJacob Faibussowitsch { 1001f746d493SDmitry Karpeev PC_GASM *osm = (PC_GASM *)pc->data; 1002b1a0a8a3SJed Brown 1003b1a0a8a3SJed Brown PetscFunctionBegin; 1004b1a0a8a3SJed Brown osm->type = type; 1005b1a0a8a3SJed Brown osm->type_set = PETSC_TRUE; 10063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1007b1a0a8a3SJed Brown } 1008b1a0a8a3SJed Brown 1009d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCGASMSetSortIndices_GASM(PC pc, PetscBool doSort) 1010d71ae5a4SJacob Faibussowitsch { 1011f746d493SDmitry Karpeev PC_GASM *osm = (PC_GASM *)pc->data; 1012b1a0a8a3SJed Brown 1013b1a0a8a3SJed Brown PetscFunctionBegin; 1014b1a0a8a3SJed Brown osm->sort_indices = doSort; 10153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1016b1a0a8a3SJed Brown } 1017b1a0a8a3SJed Brown 101844fe18e5SDmitry Karpeev /* 10198f3b4b4dSDmitry Karpeev FIXME: This routine might need to be modified now that multiple ranks per subdomain are allowed. 102044fe18e5SDmitry Karpeev In particular, it would upset the global subdomain number calculation. 102144fe18e5SDmitry Karpeev */ 1022d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCGASMGetSubKSP_GASM(PC pc, PetscInt *n, PetscInt *first, KSP **ksp) 1023d71ae5a4SJacob Faibussowitsch { 1024f746d493SDmitry Karpeev PC_GASM *osm = (PC_GASM *)pc->data; 1025b1a0a8a3SJed Brown 1026b1a0a8a3SJed Brown PetscFunctionBegin; 102708401ef6SPierre Jolivet PetscCheck(osm->n >= 1, PetscObjectComm((PetscObject)pc), PETSC_ERR_ORDER, "Need to call PCSetUp() on PC (or KSPSetUp() on the outer KSP object) before calling here"); 1028b1a0a8a3SJed Brown 10292fa5cd67SKarl Rupp if (n) *n = osm->n; 1030ab3e923fSDmitry Karpeev if (first) { 10319566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&osm->n, first, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)pc))); 1032ab3e923fSDmitry Karpeev *first -= osm->n; 1033b1a0a8a3SJed Brown } 1034b1a0a8a3SJed Brown if (ksp) { 1035b1a0a8a3SJed Brown /* Assume that local solves are now different; not necessarily 103606b43e7eSDmitry Karpeev true, though! This flag is used only for PCView_GASM() */ 1037b1a0a8a3SJed Brown *ksp = osm->ksp; 10386a4f0f73SDmitry Karpeev osm->same_subdomain_solvers = PETSC_FALSE; 1039b1a0a8a3SJed Brown } 10403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1041ab3e923fSDmitry Karpeev } /* PCGASMGetSubKSP_GASM() */ 1042b1a0a8a3SJed Brown 1043b1a0a8a3SJed Brown /*@C 1044f1580f4eSBarry Smith PCGASMSetSubdomains - Sets the subdomains for this MPI rank 1045f1580f4eSBarry Smith for the additive Schwarz preconditioner with multiple MPI ranks per subdomain, `PCGASM` 1046b1a0a8a3SJed Brown 1047c3339decSBarry Smith Collective 1048b1a0a8a3SJed Brown 1049b1a0a8a3SJed Brown Input Parameters: 10508f3b4b4dSDmitry Karpeev + pc - the preconditioner object 1051f1580f4eSBarry Smith . n - the number of subdomains for this MPI rank 105220f4b53cSBarry Smith . iis - the index sets that define the inner subdomains (or `NULL` for PETSc to determine subdomains) 105320f4b53cSBarry Smith - ois - the index sets that define the outer subdomains (or `NULL` to use the same as iis, or to construct by expanding iis by the requested overlap) 105420f4b53cSBarry Smith 105520f4b53cSBarry Smith Level: advanced 1056b1a0a8a3SJed Brown 1057b1a0a8a3SJed Brown Notes: 1058f1580f4eSBarry Smith The `IS` indices use the parallel, global numbering of the vector entries. 10596a4f0f73SDmitry Karpeev Inner subdomains are those where the correction is applied. 10606a4f0f73SDmitry Karpeev Outer subdomains are those where the residual necessary to obtain the 1061f1580f4eSBarry Smith corrections is obtained (see `PCGASMType` for the use of inner/outer subdomains). 1062f1580f4eSBarry Smith Both inner and outer subdomains can extend over several MPI ranks. 1063f1580f4eSBarry Smith This rank's portion of a subdomain is known as a local subdomain. 10646a4f0f73SDmitry Karpeev 1065f1580f4eSBarry Smith Inner subdomains can not overlap with each other, do not have any entities from remote ranks, 1066f1580f4eSBarry Smith and have to cover the entire local subdomain owned by the current rank. The index sets on each 1067f1580f4eSBarry Smith rank should be ordered such that the ith local subdomain is connected to the ith remote subdomain 1068f1580f4eSBarry Smith on another MPI rank. 1069670417b2SFande Kong 1070f1580f4eSBarry Smith By default the `PGASM` preconditioner uses 1 (local) subdomain per MPI rank. 10716a4f0f73SDmitry Karpeev 1072f1580f4eSBarry Smith .seealso: `PCGASM`, `PCGASMSetOverlap()`, `PCGASMGetSubKSP()`, 1073db781477SPatrick Sanan `PCGASMCreateSubdomains2D()`, `PCGASMGetSubdomains()` 1074b1a0a8a3SJed Brown @*/ 1075d71ae5a4SJacob Faibussowitsch PetscErrorCode PCGASMSetSubdomains(PC pc, PetscInt n, IS iis[], IS ois[]) 1076d71ae5a4SJacob Faibussowitsch { 10778f3b4b4dSDmitry Karpeev PC_GASM *osm = (PC_GASM *)pc->data; 1078b1a0a8a3SJed Brown 1079b1a0a8a3SJed Brown PetscFunctionBegin; 1080b1a0a8a3SJed Brown PetscValidHeaderSpecific(pc, PC_CLASSID, 1); 1081cac4c232SBarry Smith PetscTryMethod(pc, "PCGASMSetSubdomains_C", (PC, PetscInt, IS[], IS[]), (pc, n, iis, ois)); 10828f3b4b4dSDmitry Karpeev osm->dm_subdomains = PETSC_FALSE; 10833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1084b1a0a8a3SJed Brown } 1085b1a0a8a3SJed Brown 1086b1a0a8a3SJed Brown /*@ 1087f746d493SDmitry Karpeev PCGASMSetOverlap - Sets the overlap between a pair of subdomains for the 1088f1580f4eSBarry Smith additive Schwarz preconditioner `PCGASM`. Either all or no MPI ranks in the 10898f3b4b4dSDmitry Karpeev pc communicator must call this routine. 1090b1a0a8a3SJed Brown 1091c3339decSBarry Smith Logically Collective 1092b1a0a8a3SJed Brown 1093b1a0a8a3SJed Brown Input Parameters: 1094b1a0a8a3SJed Brown + pc - the preconditioner context 10958f3b4b4dSDmitry Karpeev - ovl - the amount of overlap between subdomains (ovl >= 0, default value = 0) 1096b1a0a8a3SJed Brown 1097b1a0a8a3SJed Brown Options Database Key: 109806b43e7eSDmitry Karpeev . -pc_gasm_overlap <overlap> - Sets overlap 1099b1a0a8a3SJed Brown 110020f4b53cSBarry Smith Level: intermediate 110120f4b53cSBarry Smith 1102b1a0a8a3SJed Brown Notes: 1103f1580f4eSBarry Smith By default the `PCGASM` preconditioner uses 1 subdomain per rank. To use 11048f3b4b4dSDmitry Karpeev multiple subdomain per perocessor or "straddling" subdomains that intersect 1105f1580f4eSBarry Smith multiple ranks use `PCGASMSetSubdomains()` (or option -pc_gasm_total_subdomains <n>). 1106b1a0a8a3SJed Brown 11078f3b4b4dSDmitry Karpeev The overlap defaults to 0, so if one desires that no additional 1108b1a0a8a3SJed Brown overlap be computed beyond what may have been set with a call to 1109f1580f4eSBarry Smith `PCGASMSetSubdomains()`, then ovl must be set to be 0. In particular, if one does 11108f3b4b4dSDmitry Karpeev not explicitly set the subdomains in application code, then all overlap would be computed 1111f1580f4eSBarry Smith internally by PETSc, and using an overlap of 0 would result in an `PCGASM` 1112b1a0a8a3SJed Brown variant that is equivalent to the block Jacobi preconditioner. 1113b1a0a8a3SJed Brown 1114f1580f4eSBarry Smith One can define initial index sets with any overlap via 1115f1580f4eSBarry Smith `PCGASMSetSubdomains()`; the routine `PCGASMSetOverlap()` merely allows 111606b43e7eSDmitry Karpeev PETSc to extend that overlap further, if desired. 1117b1a0a8a3SJed Brown 1118f1580f4eSBarry Smith .seealso: `PCGASM`, `PCGASMSetSubdomains()`, `PCGASMGetSubKSP()`, 1119db781477SPatrick Sanan `PCGASMCreateSubdomains2D()`, `PCGASMGetSubdomains()` 1120b1a0a8a3SJed Brown @*/ 1121d71ae5a4SJacob Faibussowitsch PetscErrorCode PCGASMSetOverlap(PC pc, PetscInt ovl) 1122d71ae5a4SJacob Faibussowitsch { 11238f3b4b4dSDmitry Karpeev PC_GASM *osm = (PC_GASM *)pc->data; 1124b1a0a8a3SJed Brown 1125b1a0a8a3SJed Brown PetscFunctionBegin; 1126b1a0a8a3SJed Brown PetscValidHeaderSpecific(pc, PC_CLASSID, 1); 1127b1a0a8a3SJed Brown PetscValidLogicalCollectiveInt(pc, ovl, 2); 1128cac4c232SBarry Smith PetscTryMethod(pc, "PCGASMSetOverlap_C", (PC, PetscInt), (pc, ovl)); 11298f3b4b4dSDmitry Karpeev osm->dm_subdomains = PETSC_FALSE; 11303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1131b1a0a8a3SJed Brown } 1132b1a0a8a3SJed Brown 1133b1a0a8a3SJed Brown /*@ 1134f746d493SDmitry Karpeev PCGASMSetType - Sets the type of restriction and interpolation used 1135f1580f4eSBarry Smith for local problems in the `PCGASM` additive Schwarz method. 1136b1a0a8a3SJed Brown 1137c3339decSBarry Smith Logically Collective 1138b1a0a8a3SJed Brown 1139b1a0a8a3SJed Brown Input Parameters: 1140b1a0a8a3SJed Brown + pc - the preconditioner context 1141f1580f4eSBarry Smith - type - variant of `PCGASM`, one of 1142b1a0a8a3SJed Brown .vb 1143f1580f4eSBarry Smith `PC_GASM_BASIC` - full interpolation and restriction 1144f1580f4eSBarry Smith `PC_GASM_RESTRICT` - full restriction, local MPI rank interpolation 1145f1580f4eSBarry Smith `PC_GASM_INTERPOLATE` - full interpolation, local MPI rank restriction 1146f1580f4eSBarry Smith `PC_GASM_NONE` - local MPI rank restriction and interpolation 1147b1a0a8a3SJed Brown .ve 1148b1a0a8a3SJed Brown 1149b1a0a8a3SJed Brown Options Database Key: 1150f746d493SDmitry Karpeev . -pc_gasm_type [basic,restrict,interpolate,none] - Sets GASM type 1151b1a0a8a3SJed Brown 1152b1a0a8a3SJed Brown Level: intermediate 1153b1a0a8a3SJed Brown 1154f1580f4eSBarry Smith .seealso: `PCGASM`, `PCGASMSetSubdomains()`, `PCGASMGetSubKSP()`, 1155f1580f4eSBarry Smith `PCGASMCreateSubdomains2D()`, `PCASM`, `PCASMSetType()` 1156b1a0a8a3SJed Brown @*/ 1157d71ae5a4SJacob Faibussowitsch PetscErrorCode PCGASMSetType(PC pc, PCGASMType type) 1158d71ae5a4SJacob Faibussowitsch { 1159b1a0a8a3SJed Brown PetscFunctionBegin; 1160b1a0a8a3SJed Brown PetscValidHeaderSpecific(pc, PC_CLASSID, 1); 1161b1a0a8a3SJed Brown PetscValidLogicalCollectiveEnum(pc, type, 2); 1162cac4c232SBarry Smith PetscTryMethod(pc, "PCGASMSetType_C", (PC, PCGASMType), (pc, type)); 11633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1164b1a0a8a3SJed Brown } 1165b1a0a8a3SJed Brown 1166b1a0a8a3SJed Brown /*@ 1167f746d493SDmitry Karpeev PCGASMSetSortIndices - Determines whether subdomain indices are sorted. 1168b1a0a8a3SJed Brown 1169c3339decSBarry Smith Logically Collective 1170b1a0a8a3SJed Brown 1171b1a0a8a3SJed Brown Input Parameters: 1172b1a0a8a3SJed Brown + pc - the preconditioner context 1173b1a0a8a3SJed Brown - doSort - sort the subdomain indices 1174b1a0a8a3SJed Brown 1175b1a0a8a3SJed Brown Level: intermediate 1176b1a0a8a3SJed Brown 1177f1580f4eSBarry Smith .seealso: `PCGASM`, `PCGASMSetSubdomains()`, `PCGASMGetSubKSP()`, 1178db781477SPatrick Sanan `PCGASMCreateSubdomains2D()` 1179b1a0a8a3SJed Brown @*/ 1180d71ae5a4SJacob Faibussowitsch PetscErrorCode PCGASMSetSortIndices(PC pc, PetscBool doSort) 1181d71ae5a4SJacob Faibussowitsch { 1182b1a0a8a3SJed Brown PetscFunctionBegin; 1183b1a0a8a3SJed Brown PetscValidHeaderSpecific(pc, PC_CLASSID, 1); 1184b1a0a8a3SJed Brown PetscValidLogicalCollectiveBool(pc, doSort, 2); 1185cac4c232SBarry Smith PetscTryMethod(pc, "PCGASMSetSortIndices_C", (PC, PetscBool), (pc, doSort)); 11863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1187b1a0a8a3SJed Brown } 1188b1a0a8a3SJed Brown 1189b1a0a8a3SJed Brown /*@C 1190f1580f4eSBarry Smith PCGASMGetSubKSP - Gets the local `KSP` contexts for all subdomains on 1191f1580f4eSBarry Smith this MPI rank. 1192b1a0a8a3SJed Brown 1193c3339decSBarry Smith Collective iff first_local is requested 1194b1a0a8a3SJed Brown 1195b1a0a8a3SJed Brown Input Parameter: 1196b1a0a8a3SJed Brown . pc - the preconditioner context 1197b1a0a8a3SJed Brown 1198b1a0a8a3SJed Brown Output Parameters: 1199f1580f4eSBarry Smith + n_local - the number of blocks on this MPI rank or NULL 1200f1580f4eSBarry Smith . first_local - the global number of the first block on this rank or NULL, 1201f1580f4eSBarry Smith all ranks must request or all must pass NULL 1202f1580f4eSBarry Smith - ksp - the array of `KSP` contexts 1203b1a0a8a3SJed Brown 1204b1a0a8a3SJed Brown Note: 1205f1580f4eSBarry Smith After `PCGASMGetSubKSP()` the array of `KSP`es is not to be freed 1206b1a0a8a3SJed Brown 1207f1580f4eSBarry Smith Currently for some matrix implementations only 1 block per MPI rank 1208b1a0a8a3SJed Brown is supported. 1209b1a0a8a3SJed Brown 1210f1580f4eSBarry Smith You must call `KSPSetUp()` before calling `PCGASMGetSubKSP()`. 1211b1a0a8a3SJed Brown 1212b1a0a8a3SJed Brown Level: advanced 1213b1a0a8a3SJed Brown 1214f1580f4eSBarry Smith .seealso: `PCGASM`, `PCGASMSetSubdomains()`, `PCGASMSetOverlap()`, 1215db781477SPatrick Sanan `PCGASMCreateSubdomains2D()`, 1216b1a0a8a3SJed Brown @*/ 1217d71ae5a4SJacob Faibussowitsch PetscErrorCode PCGASMGetSubKSP(PC pc, PetscInt *n_local, PetscInt *first_local, KSP *ksp[]) 1218d71ae5a4SJacob Faibussowitsch { 1219b1a0a8a3SJed Brown PetscFunctionBegin; 1220b1a0a8a3SJed Brown PetscValidHeaderSpecific(pc, PC_CLASSID, 1); 1221cac4c232SBarry Smith PetscUseMethod(pc, "PCGASMGetSubKSP_C", (PC, PetscInt *, PetscInt *, KSP **), (pc, n_local, first_local, ksp)); 12223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1223b1a0a8a3SJed Brown } 1224b1a0a8a3SJed Brown 1225b1a0a8a3SJed Brown /*MC 1226f746d493SDmitry Karpeev PCGASM - Use the (restricted) additive Schwarz method, each block is (approximately) solved with 1227f1580f4eSBarry Smith its own `KSP` object on a subset of MPI ranks 1228b1a0a8a3SJed Brown 1229b1a0a8a3SJed Brown Options Database Keys: 1230f1580f4eSBarry Smith + -pc_gasm_total_subdomains <n> - Sets total number of local subdomains to be distributed among MPI ranks 1231f1580f4eSBarry Smith . -pc_gasm_view_subdomains - activates the printing of subdomain indices in `PCView()`, -ksp_view or -snes_view 1232f1580f4eSBarry Smith . -pc_gasm_print_subdomains - activates the printing of subdomain indices in `PCSetUp()` 123306b43e7eSDmitry Karpeev . -pc_gasm_overlap <ovl> - Sets overlap by which to (automatically) extend local subdomains 1234f1580f4eSBarry Smith - -pc_gasm_type [basic,restrict,interpolate,none] - Sets `PCGASMType` 1235b1a0a8a3SJed Brown 123695452b02SPatrick Sanan Notes: 1237f1580f4eSBarry Smith To set options on the solvers for each block append -sub_ to all the `KSP`, and `PC` 1238b1a0a8a3SJed Brown options database keys. For example, -sub_pc_type ilu -sub_pc_factor_levels 1 -sub_ksp_type preonly 1239b1a0a8a3SJed Brown 1240f1580f4eSBarry Smith To set the options on the solvers separate for each block call `PCGASMGetSubKSP()` 1241f1580f4eSBarry Smith and set the options directly on the resulting `KSP` object (you can access its `PC` 1242*0462cc06SPierre Jolivet with `KSPGetPC()`) 1243b1a0a8a3SJed Brown 1244b1a0a8a3SJed Brown Level: beginner 1245b1a0a8a3SJed Brown 1246b1a0a8a3SJed Brown References: 1247606c0280SSatish Balay + * - M Dryja, OB Widlund, An additive variant of the Schwarz alternating method for the case of many subregions 124896a0c994SBarry Smith Courant Institute, New York University Technical report 1249606c0280SSatish Balay - * - Barry Smith, Petter Bjorstad, and William Gropp, Domain Decompositions: Parallel Multilevel Methods for Elliptic Partial Differential Equations, 125096a0c994SBarry Smith Cambridge University Press. 1251b1a0a8a3SJed Brown 1252f1580f4eSBarry Smith .seealso: `PCCreate()`, `PCSetType()`, `PCType`, `PC`, `PCASM`, `PCGASMType`, `PCGASMSetType()`, 1253db781477SPatrick Sanan `PCBJACOBI`, `PCGASMGetSubKSP()`, `PCGASMSetSubdomains()`, 1254db781477SPatrick Sanan `PCSetModifySubMatrices()`, `PCGASMSetOverlap()`, `PCGASMSetType()` 1255b1a0a8a3SJed Brown M*/ 1256b1a0a8a3SJed Brown 1257d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode PCCreate_GASM(PC pc) 1258d71ae5a4SJacob Faibussowitsch { 1259f746d493SDmitry Karpeev PC_GASM *osm; 1260b1a0a8a3SJed Brown 1261b1a0a8a3SJed Brown PetscFunctionBegin; 12624dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&osm)); 12632fa5cd67SKarl Rupp 12648f3b4b4dSDmitry Karpeev osm->N = PETSC_DETERMINE; 126506b43e7eSDmitry Karpeev osm->n = PETSC_DECIDE; 12668f3b4b4dSDmitry Karpeev osm->nmax = PETSC_DETERMINE; 12678f3b4b4dSDmitry Karpeev osm->overlap = 0; 12680a545947SLisandro Dalcin osm->ksp = NULL; 12690a545947SLisandro Dalcin osm->gorestriction = NULL; 12700a545947SLisandro Dalcin osm->girestriction = NULL; 12710a545947SLisandro Dalcin osm->pctoouter = NULL; 12720a545947SLisandro Dalcin osm->gx = NULL; 12730a545947SLisandro Dalcin osm->gy = NULL; 12740a545947SLisandro Dalcin osm->x = NULL; 12750a545947SLisandro Dalcin osm->y = NULL; 12760a545947SLisandro Dalcin osm->pcx = NULL; 12770a545947SLisandro Dalcin osm->pcy = NULL; 12780a545947SLisandro Dalcin osm->permutationIS = NULL; 12790a545947SLisandro Dalcin osm->permutationP = NULL; 12800a545947SLisandro Dalcin osm->pcmat = NULL; 12810a545947SLisandro Dalcin osm->ois = NULL; 12820a545947SLisandro Dalcin osm->iis = NULL; 12830a545947SLisandro Dalcin osm->pmat = NULL; 1284f746d493SDmitry Karpeev osm->type = PC_GASM_RESTRICT; 12856a4f0f73SDmitry Karpeev osm->same_subdomain_solvers = PETSC_TRUE; 1286b1a0a8a3SJed Brown osm->sort_indices = PETSC_TRUE; 1287d709ea83SDmitry Karpeev osm->dm_subdomains = PETSC_FALSE; 1288ea91fabdSFande Kong osm->hierarchicalpartitioning = PETSC_FALSE; 1289b1a0a8a3SJed Brown 1290b1a0a8a3SJed Brown pc->data = (void *)osm; 1291f746d493SDmitry Karpeev pc->ops->apply = PCApply_GASM; 129248e38a8aSPierre Jolivet pc->ops->matapply = PCMatApply_GASM; 1293f746d493SDmitry Karpeev pc->ops->applytranspose = PCApplyTranspose_GASM; 1294f746d493SDmitry Karpeev pc->ops->setup = PCSetUp_GASM; 1295a06653b4SBarry Smith pc->ops->reset = PCReset_GASM; 1296f746d493SDmitry Karpeev pc->ops->destroy = PCDestroy_GASM; 1297f746d493SDmitry Karpeev pc->ops->setfromoptions = PCSetFromOptions_GASM; 1298f746d493SDmitry Karpeev pc->ops->setuponblocks = PCSetUpOnBlocks_GASM; 1299f746d493SDmitry Karpeev pc->ops->view = PCView_GASM; 13000a545947SLisandro Dalcin pc->ops->applyrichardson = NULL; 1301b1a0a8a3SJed Brown 13029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)pc, "PCGASMSetSubdomains_C", PCGASMSetSubdomains_GASM)); 13039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)pc, "PCGASMSetOverlap_C", PCGASMSetOverlap_GASM)); 13049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)pc, "PCGASMSetType_C", PCGASMSetType_GASM)); 13059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)pc, "PCGASMSetSortIndices_C", PCGASMSetSortIndices_GASM)); 13069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)pc, "PCGASMGetSubKSP_C", PCGASMGetSubKSP_GASM)); 13073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1308b1a0a8a3SJed Brown } 1309b1a0a8a3SJed Brown 1310d71ae5a4SJacob Faibussowitsch PetscErrorCode PCGASMCreateLocalSubdomains(Mat A, PetscInt nloc, IS *iis[]) 1311d71ae5a4SJacob Faibussowitsch { 1312b1a0a8a3SJed Brown MatPartitioning mpart; 1313b1a0a8a3SJed Brown const char *prefix; 1314b1a0a8a3SJed Brown PetscInt i, j, rstart, rend, bs; 1315976e8c5aSLisandro Dalcin PetscBool hasop, isbaij = PETSC_FALSE, foundpart = PETSC_FALSE; 13160298fd71SBarry Smith Mat Ad = NULL, adj; 1317b1a0a8a3SJed Brown IS ispart, isnumb, *is; 1318b1a0a8a3SJed Brown 1319b1a0a8a3SJed Brown PetscFunctionBegin; 132063a3b9bcSJacob Faibussowitsch PetscCheck(nloc >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "number of local subdomains must > 0, got nloc = %" PetscInt_FMT, nloc); 1321b1a0a8a3SJed Brown 1322b1a0a8a3SJed Brown /* Get prefix, row distribution, and block size */ 13239566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(A, &prefix)); 13249566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, &rend)); 13259566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(A, &bs)); 13262472a847SBarry Smith PetscCheck(rstart / bs * bs == rstart && rend / bs * bs == rend, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "bad row distribution [%" PetscInt_FMT ",%" PetscInt_FMT ") for matrix block size %" PetscInt_FMT, rstart, rend, bs); 1327b1a0a8a3SJed Brown 1328b1a0a8a3SJed Brown /* Get diagonal block from matrix if possible */ 13299566063dSJacob Faibussowitsch PetscCall(MatHasOperation(A, MATOP_GET_DIAGONAL_BLOCK, &hasop)); 133048a46eb9SPierre Jolivet if (hasop) PetscCall(MatGetDiagonalBlock(A, &Ad)); 1331b1a0a8a3SJed Brown if (Ad) { 13329566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)Ad, MATSEQBAIJ, &isbaij)); 13339566063dSJacob Faibussowitsch if (!isbaij) PetscCall(PetscObjectBaseTypeCompare((PetscObject)Ad, MATSEQSBAIJ, &isbaij)); 1334b1a0a8a3SJed Brown } 13358f3b4b4dSDmitry Karpeev if (Ad && nloc > 1) { 1336b1a0a8a3SJed Brown PetscBool match, done; 1337b1a0a8a3SJed Brown /* Try to setup a good matrix partitioning if available */ 13389566063dSJacob Faibussowitsch PetscCall(MatPartitioningCreate(PETSC_COMM_SELF, &mpart)); 13399566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)mpart, prefix)); 13409566063dSJacob Faibussowitsch PetscCall(MatPartitioningSetFromOptions(mpart)); 13419566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mpart, MATPARTITIONINGCURRENT, &match)); 134248a46eb9SPierre Jolivet if (!match) PetscCall(PetscObjectTypeCompare((PetscObject)mpart, MATPARTITIONINGSQUARE, &match)); 1343b1a0a8a3SJed Brown if (!match) { /* assume a "good" partitioner is available */ 13441a83f524SJed Brown PetscInt na; 13451a83f524SJed Brown const PetscInt *ia, *ja; 13469566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(Ad, 0, PETSC_TRUE, isbaij, &na, &ia, &ja, &done)); 1347b1a0a8a3SJed Brown if (done) { 1348b1a0a8a3SJed Brown /* Build adjacency matrix by hand. Unfortunately a call to 1349b1a0a8a3SJed Brown MatConvert(Ad,MATMPIADJ,MAT_INITIAL_MATRIX,&adj) will 1350b1a0a8a3SJed Brown remove the block-aij structure and we cannot expect 1351b1a0a8a3SJed Brown MatPartitioning to split vertices as we need */ 13520a545947SLisandro Dalcin PetscInt i, j, len, nnz, cnt, *iia = NULL, *jja = NULL; 13531a83f524SJed Brown const PetscInt *row; 1354b1a0a8a3SJed Brown nnz = 0; 1355b1a0a8a3SJed Brown for (i = 0; i < na; i++) { /* count number of nonzeros */ 1356b1a0a8a3SJed Brown len = ia[i + 1] - ia[i]; 1357b1a0a8a3SJed Brown row = ja + ia[i]; 1358b1a0a8a3SJed Brown for (j = 0; j < len; j++) { 1359b1a0a8a3SJed Brown if (row[j] == i) { /* don't count diagonal */ 13609371c9d4SSatish Balay len--; 13619371c9d4SSatish Balay break; 1362b1a0a8a3SJed Brown } 1363b1a0a8a3SJed Brown } 1364b1a0a8a3SJed Brown nnz += len; 1365b1a0a8a3SJed Brown } 13669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(na + 1, &iia)); 13679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nnz, &jja)); 1368b1a0a8a3SJed Brown nnz = 0; 1369b1a0a8a3SJed Brown iia[0] = 0; 1370b1a0a8a3SJed Brown for (i = 0; i < na; i++) { /* fill adjacency */ 1371b1a0a8a3SJed Brown cnt = 0; 1372b1a0a8a3SJed Brown len = ia[i + 1] - ia[i]; 1373b1a0a8a3SJed Brown row = ja + ia[i]; 1374b1a0a8a3SJed Brown for (j = 0; j < len; j++) { 13752fa5cd67SKarl Rupp if (row[j] != i) jja[nnz + cnt++] = row[j]; /* if not diagonal */ 1376b1a0a8a3SJed Brown } 1377b1a0a8a3SJed Brown nnz += cnt; 1378b1a0a8a3SJed Brown iia[i + 1] = nnz; 1379b1a0a8a3SJed Brown } 1380b1a0a8a3SJed Brown /* Partitioning of the adjacency matrix */ 13819566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAdj(PETSC_COMM_SELF, na, na, iia, jja, NULL, &adj)); 13829566063dSJacob Faibussowitsch PetscCall(MatPartitioningSetAdjacency(mpart, adj)); 13839566063dSJacob Faibussowitsch PetscCall(MatPartitioningSetNParts(mpart, nloc)); 13849566063dSJacob Faibussowitsch PetscCall(MatPartitioningApply(mpart, &ispart)); 13859566063dSJacob Faibussowitsch PetscCall(ISPartitioningToNumbering(ispart, &isnumb)); 13869566063dSJacob Faibussowitsch PetscCall(MatDestroy(&adj)); 1387b1a0a8a3SJed Brown foundpart = PETSC_TRUE; 1388b1a0a8a3SJed Brown } 13899566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(Ad, 0, PETSC_TRUE, isbaij, &na, &ia, &ja, &done)); 1390b1a0a8a3SJed Brown } 13919566063dSJacob Faibussowitsch PetscCall(MatPartitioningDestroy(&mpart)); 1392b1a0a8a3SJed Brown } 13939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nloc, &is)); 1394b1a0a8a3SJed Brown if (!foundpart) { 1395b1a0a8a3SJed Brown /* Partitioning by contiguous chunks of rows */ 1396b1a0a8a3SJed Brown 1397b1a0a8a3SJed Brown PetscInt mbs = (rend - rstart) / bs; 1398b1a0a8a3SJed Brown PetscInt start = rstart; 13998f3b4b4dSDmitry Karpeev for (i = 0; i < nloc; i++) { 14008f3b4b4dSDmitry Karpeev PetscInt count = (mbs / nloc + ((mbs % nloc) > i)) * bs; 14019566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, count, start, 1, &is[i])); 1402b1a0a8a3SJed Brown start += count; 1403b1a0a8a3SJed Brown } 1404b1a0a8a3SJed Brown 1405b1a0a8a3SJed Brown } else { 1406b1a0a8a3SJed Brown /* Partitioning by adjacency of diagonal block */ 1407b1a0a8a3SJed Brown 1408b1a0a8a3SJed Brown const PetscInt *numbering; 1409b1a0a8a3SJed Brown PetscInt *count, nidx, *indices, *newidx, start = 0; 1410b1a0a8a3SJed Brown /* Get node count in each partition */ 14119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nloc, &count)); 14129566063dSJacob Faibussowitsch PetscCall(ISPartitioningCount(ispart, nloc, count)); 1413b1a0a8a3SJed Brown if (isbaij && bs > 1) { /* adjust for the block-aij case */ 14148f3b4b4dSDmitry Karpeev for (i = 0; i < nloc; i++) count[i] *= bs; 1415b1a0a8a3SJed Brown } 1416b1a0a8a3SJed Brown /* Build indices from node numbering */ 14179566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isnumb, &nidx)); 14189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nidx, &indices)); 1419b1a0a8a3SJed Brown for (i = 0; i < nidx; i++) indices[i] = i; /* needs to be initialized */ 14209566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isnumb, &numbering)); 14219566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithPermutation(nidx, numbering, indices)); 14229566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isnumb, &numbering)); 1423b1a0a8a3SJed Brown if (isbaij && bs > 1) { /* adjust for the block-aij case */ 14249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nidx * bs, &newidx)); 14252fa5cd67SKarl Rupp for (i = 0; i < nidx; i++) { 14262fa5cd67SKarl Rupp for (j = 0; j < bs; j++) newidx[i * bs + j] = indices[i] * bs + j; 14272fa5cd67SKarl Rupp } 14289566063dSJacob Faibussowitsch PetscCall(PetscFree(indices)); 1429b1a0a8a3SJed Brown nidx *= bs; 1430b1a0a8a3SJed Brown indices = newidx; 1431b1a0a8a3SJed Brown } 1432b1a0a8a3SJed Brown /* Shift to get global indices */ 1433b1a0a8a3SJed Brown for (i = 0; i < nidx; i++) indices[i] += rstart; 1434b1a0a8a3SJed Brown 1435b1a0a8a3SJed Brown /* Build the index sets for each block */ 14368f3b4b4dSDmitry Karpeev for (i = 0; i < nloc; i++) { 14379566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count[i], &indices[start], PETSC_COPY_VALUES, &is[i])); 14389566063dSJacob Faibussowitsch PetscCall(ISSort(is[i])); 1439b1a0a8a3SJed Brown start += count[i]; 1440b1a0a8a3SJed Brown } 1441b1a0a8a3SJed Brown 14429566063dSJacob Faibussowitsch PetscCall(PetscFree(count)); 14439566063dSJacob Faibussowitsch PetscCall(PetscFree(indices)); 14449566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isnumb)); 14459566063dSJacob Faibussowitsch PetscCall(ISDestroy(&ispart)); 1446b1a0a8a3SJed Brown } 14476a4f0f73SDmitry Karpeev *iis = is; 14483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14498f3b4b4dSDmitry Karpeev } 14508f3b4b4dSDmitry Karpeev 1451d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PCGASMCreateStraddlingSubdomains(Mat A, PetscInt N, PetscInt *n, IS *iis[]) 1452d71ae5a4SJacob Faibussowitsch { 14538f3b4b4dSDmitry Karpeev PetscFunctionBegin; 14549566063dSJacob Faibussowitsch PetscCall(MatSubdomainsCreateCoalesce(A, N, n, iis)); 14553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14568f3b4b4dSDmitry Karpeev } 14578f3b4b4dSDmitry Karpeev 14588f3b4b4dSDmitry Karpeev /*@C 1459f1580f4eSBarry Smith PCGASMCreateSubdomains - Creates n index sets defining n nonoverlapping subdomains for the `PCGASM` additive 14608f3b4b4dSDmitry Karpeev Schwarz preconditioner for a any problem based on its matrix. 14618f3b4b4dSDmitry Karpeev 14628f3b4b4dSDmitry Karpeev Collective 14638f3b4b4dSDmitry Karpeev 14648f3b4b4dSDmitry Karpeev Input Parameters: 14658f3b4b4dSDmitry Karpeev + A - The global matrix operator 14668f3b4b4dSDmitry Karpeev - N - the number of global subdomains requested 14678f3b4b4dSDmitry Karpeev 14688f3b4b4dSDmitry Karpeev Output Parameters: 1469f1580f4eSBarry Smith + n - the number of subdomains created on this MPI rank 14708f3b4b4dSDmitry Karpeev - iis - the array of index sets defining the local inner subdomains (on which the correction is applied) 14718f3b4b4dSDmitry Karpeev 14728f3b4b4dSDmitry Karpeev Level: advanced 14738f3b4b4dSDmitry Karpeev 1474f1580f4eSBarry Smith Note: 147520f4b53cSBarry Smith When `N` >= A's communicator size, each subdomain is local -- contained within a single MPI rank. 147620f4b53cSBarry Smith When `N` < size, the subdomains are 'straddling' (rank boundaries) and are no longer local. 147720f4b53cSBarry Smith The resulting subdomains can be use in `PCGASMSetSubdomains`(pc,n,iss,`NULL`). The overlapping 14788f3b4b4dSDmitry Karpeev outer subdomains will be automatically generated from these according to the requested amount of 14798f3b4b4dSDmitry Karpeev overlap; this is currently supported only with local subdomains. 14808f3b4b4dSDmitry Karpeev 1481f1580f4eSBarry Smith .seealso: `PCGASM`, `PCGASMSetSubdomains()`, `PCGASMDestroySubdomains()` 14828f3b4b4dSDmitry Karpeev @*/ 1483d71ae5a4SJacob Faibussowitsch PetscErrorCode PCGASMCreateSubdomains(Mat A, PetscInt N, PetscInt *n, IS *iis[]) 1484d71ae5a4SJacob Faibussowitsch { 14858f3b4b4dSDmitry Karpeev PetscMPIInt size; 14868f3b4b4dSDmitry Karpeev 14878f3b4b4dSDmitry Karpeev PetscFunctionBegin; 14888f3b4b4dSDmitry Karpeev PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 14898f3b4b4dSDmitry Karpeev PetscValidPointer(iis, 4); 14908f3b4b4dSDmitry Karpeev 149163a3b9bcSJacob Faibussowitsch PetscCheck(N >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of subdomains must be > 0, N = %" PetscInt_FMT, N); 14929566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 14938f3b4b4dSDmitry Karpeev if (N >= size) { 14948f3b4b4dSDmitry Karpeev *n = N / size + (N % size); 14959566063dSJacob Faibussowitsch PetscCall(PCGASMCreateLocalSubdomains(A, *n, iis)); 14966a4f0f73SDmitry Karpeev } else { 14979566063dSJacob Faibussowitsch PetscCall(PCGASMCreateStraddlingSubdomains(A, N, n, iis)); 14986a4f0f73SDmitry Karpeev } 14993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1500b1a0a8a3SJed Brown } 1501b1a0a8a3SJed Brown 1502b1a0a8a3SJed Brown /*@C 1503f746d493SDmitry Karpeev PCGASMDestroySubdomains - Destroys the index sets created with 1504f1580f4eSBarry Smith `PCGASMCreateSubdomains()` or `PCGASMCreateSubdomains2D()`. Should be 1505f1580f4eSBarry Smith called after setting subdomains with `PCGASMSetSubdomains()`. 1506b1a0a8a3SJed Brown 1507b1a0a8a3SJed Brown Collective 1508b1a0a8a3SJed Brown 1509b1a0a8a3SJed Brown Input Parameters: 1510b1a0a8a3SJed Brown + n - the number of index sets 15116a4f0f73SDmitry Karpeev . iis - the array of inner subdomains, 15120298fd71SBarry Smith - ois - the array of outer subdomains, can be NULL 1513b1a0a8a3SJed Brown 15146a4f0f73SDmitry Karpeev Level: intermediate 15156a4f0f73SDmitry Karpeev 1516f1580f4eSBarry Smith Note: 1517f1580f4eSBarry Smith This is a convenience subroutine that walks each list, 1518f1580f4eSBarry Smith destroys each `IS` on the list, and then frees the list. At the end the 151920f4b53cSBarry Smith list pointers are set to `NULL`. 1520b1a0a8a3SJed Brown 1521f1580f4eSBarry Smith .seealso: `PCGASM`, `PCGASMCreateSubdomains()`, `PCGASMSetSubdomains()` 1522b1a0a8a3SJed Brown @*/ 1523d71ae5a4SJacob Faibussowitsch PetscErrorCode PCGASMDestroySubdomains(PetscInt n, IS **iis, IS **ois) 1524d71ae5a4SJacob Faibussowitsch { 1525b1a0a8a3SJed Brown PetscInt i; 15265fd66863SKarl Rupp 1527b1a0a8a3SJed Brown PetscFunctionBegin; 15283ba16761SJacob Faibussowitsch if (n <= 0) PetscFunctionReturn(PETSC_SUCCESS); 15296a4f0f73SDmitry Karpeev if (ois) { 15302c112581SDmitry Karpeev PetscValidPointer(ois, 3); 15312c112581SDmitry Karpeev if (*ois) { 15322c112581SDmitry Karpeev PetscValidPointer(*ois, 3); 153348a46eb9SPierre Jolivet for (i = 0; i < n; i++) PetscCall(ISDestroy(&(*ois)[i])); 15349566063dSJacob Faibussowitsch PetscCall(PetscFree((*ois))); 15352c112581SDmitry Karpeev } 1536b1a0a8a3SJed Brown } 1537b9d0fdaaSFande Kong if (iis) { 1538b9d0fdaaSFande Kong PetscValidPointer(iis, 2); 1539b9d0fdaaSFande Kong if (*iis) { 1540b9d0fdaaSFande Kong PetscValidPointer(*iis, 2); 154148a46eb9SPierre Jolivet for (i = 0; i < n; i++) PetscCall(ISDestroy(&(*iis)[i])); 15429566063dSJacob Faibussowitsch PetscCall(PetscFree((*iis))); 1543b9d0fdaaSFande Kong } 1544b9d0fdaaSFande Kong } 15453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1546b1a0a8a3SJed Brown } 1547b1a0a8a3SJed Brown 1548af538404SDmitry Karpeev #define PCGASMLocalSubdomainBounds2D(M, N, xleft, ylow, xright, yhigh, first, last, xleft_loc, ylow_loc, xright_loc, yhigh_loc, n) \ 1549af538404SDmitry Karpeev { \ 1550af538404SDmitry Karpeev PetscInt first_row = first / M, last_row = last / M + 1; \ 1551af538404SDmitry Karpeev /* \ 1552af538404SDmitry Karpeev Compute ylow_loc and yhigh_loc so that (ylow_loc,xleft) and (yhigh_loc,xright) are the corners \ 1553af538404SDmitry Karpeev of the bounding box of the intersection of the subdomain with the local ownership range (local \ 1554af538404SDmitry Karpeev subdomain). \ 1555af538404SDmitry Karpeev Also compute xleft_loc and xright_loc as the lower and upper bounds on the first and last rows \ 1556af538404SDmitry Karpeev of the intersection. \ 1557af538404SDmitry Karpeev */ \ 1558af538404SDmitry Karpeev /* ylow_loc is the grid row containing the first element of the local sumbdomain */ \ 1559eec7e3faSDmitry Karpeev *ylow_loc = PetscMax(first_row, ylow); \ 1560af538404SDmitry Karpeev /* xleft_loc is the offset of first element of the local subdomain within its grid row (might actually be outside the local subdomain) */ \ 1561eec7e3faSDmitry Karpeev *xleft_loc = *ylow_loc == first_row ? PetscMax(first % M, xleft) : xleft; \ 1562af538404SDmitry Karpeev /* yhigh_loc is the grid row above the last local subdomain element */ \ 1563eec7e3faSDmitry Karpeev *yhigh_loc = PetscMin(last_row, yhigh); \ 1564af538404SDmitry Karpeev /* xright is the offset of the end of the local subdomain within its grid row (might actually be outside the local subdomain) */ \ 1565eec7e3faSDmitry Karpeev *xright_loc = *yhigh_loc == last_row ? PetscMin(xright, last % M) : xright; \ 1566af538404SDmitry Karpeev /* Now compute the size of the local subdomain n. */ \ 1567c3518bceSDmitry Karpeev *n = 0; \ 1568eec7e3faSDmitry Karpeev if (*ylow_loc < *yhigh_loc) { \ 1569af538404SDmitry Karpeev PetscInt width = xright - xleft; \ 1570eec7e3faSDmitry Karpeev *n += width * (*yhigh_loc - *ylow_loc - 1); \ 1571eec7e3faSDmitry Karpeev *n += PetscMin(PetscMax(*xright_loc - xleft, 0), width); \ 1572eec7e3faSDmitry Karpeev *n -= PetscMin(PetscMax(*xleft_loc - xleft, 0), width); \ 1573af538404SDmitry Karpeev } \ 1574af538404SDmitry Karpeev } 1575af538404SDmitry Karpeev 1576b1a0a8a3SJed Brown /*@ 1577f1580f4eSBarry Smith PCGASMCreateSubdomains2D - Creates the index sets for the `PCGASM` overlapping Schwarz 1578b1a0a8a3SJed Brown preconditioner for a two-dimensional problem on a regular grid. 1579b1a0a8a3SJed Brown 1580af538404SDmitry Karpeev Collective 1581b1a0a8a3SJed Brown 1582b1a0a8a3SJed Brown Input Parameters: 15836b867d5aSJose E. Roman + pc - the preconditioner context 15846b867d5aSJose E. Roman . M - the global number of grid points in the x direction 15856b867d5aSJose E. Roman . N - the global number of grid points in the y direction 15866b867d5aSJose E. Roman . Mdomains - the global number of subdomains in the x direction 15876b867d5aSJose E. Roman . Ndomains - the global number of subdomains in the y direction 1588b1a0a8a3SJed Brown . dof - degrees of freedom per node 1589b1a0a8a3SJed Brown - overlap - overlap in mesh lines 1590b1a0a8a3SJed Brown 1591b1a0a8a3SJed Brown Output Parameters: 1592af538404SDmitry Karpeev + Nsub - the number of local subdomains created 15936a4f0f73SDmitry Karpeev . iis - array of index sets defining inner (nonoverlapping) subdomains 15946a4f0f73SDmitry Karpeev - ois - array of index sets defining outer (overlapping, if overlap > 0) subdomains 1595b1a0a8a3SJed Brown 1596b1a0a8a3SJed Brown Level: advanced 1597b1a0a8a3SJed Brown 1598f1580f4eSBarry Smith .seealso: `PCGASM`, `PCGASMSetSubdomains()`, `PCGASMGetSubKSP()`, `PCGASMSetOverlap()` 1599b1a0a8a3SJed Brown @*/ 1600d71ae5a4SJacob Faibussowitsch PetscErrorCode PCGASMCreateSubdomains2D(PC pc, PetscInt M, PetscInt N, PetscInt Mdomains, PetscInt Ndomains, PetscInt dof, PetscInt overlap, PetscInt *nsub, IS **iis, IS **ois) 1601d71ae5a4SJacob Faibussowitsch { 16022bbb417fSDmitry Karpeev PetscMPIInt size, rank; 16032bbb417fSDmitry Karpeev PetscInt i, j; 16042bbb417fSDmitry Karpeev PetscInt maxheight, maxwidth; 16052bbb417fSDmitry Karpeev PetscInt xstart, xleft, xright, xleft_loc, xright_loc; 16062bbb417fSDmitry Karpeev PetscInt ystart, ylow, yhigh, ylow_loc, yhigh_loc; 1607eec7e3faSDmitry Karpeev PetscInt x[2][2], y[2][2], n[2]; 16082bbb417fSDmitry Karpeev PetscInt first, last; 16092bbb417fSDmitry Karpeev PetscInt nidx, *idx; 16102bbb417fSDmitry Karpeev PetscInt ii, jj, s, q, d; 1611af538404SDmitry Karpeev PetscInt k, kk; 16122bbb417fSDmitry Karpeev PetscMPIInt color; 16132bbb417fSDmitry Karpeev MPI_Comm comm, subcomm; 16140a545947SLisandro Dalcin IS **xis = NULL, **is = ois, **is_local = iis; 1615d34fcf5fSBarry Smith 1616b1a0a8a3SJed Brown PetscFunctionBegin; 16179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)pc, &comm)); 16189566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 16199566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 16209566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(pc->pmat, &first, &last)); 16219371c9d4SSatish Balay PetscCheck((first % dof) == 0 && (last % dof) == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, 16229371c9d4SSatish Balay "Matrix row partitioning unsuitable for domain decomposition: local row range (%" PetscInt_FMT ",%" PetscInt_FMT ") " 16239371c9d4SSatish Balay "does not respect the number of degrees of freedom per grid point %" PetscInt_FMT, 16249371c9d4SSatish Balay first, last, dof); 1625d34fcf5fSBarry Smith 1626af538404SDmitry Karpeev /* Determine the number of domains with nonzero intersections with the local ownership range. */ 16272bbb417fSDmitry Karpeev s = 0; 1628af538404SDmitry Karpeev ystart = 0; 1629af538404SDmitry Karpeev for (j = 0; j < Ndomains; ++j) { 1630af538404SDmitry Karpeev maxheight = N / Ndomains + ((N % Ndomains) > j); /* Maximal height of subdomain */ 1631da81f932SPierre Jolivet PetscCheck(maxheight >= 2, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many %" PetscInt_FMT " subdomains in the vertical direction for mesh height %" PetscInt_FMT, Ndomains, N); 1632eec7e3faSDmitry Karpeev /* Vertical domain limits with an overlap. */ 1633eec7e3faSDmitry Karpeev ylow = PetscMax(ystart - overlap, 0); 1634eec7e3faSDmitry Karpeev yhigh = PetscMin(ystart + maxheight + overlap, N); 1635b1a0a8a3SJed Brown xstart = 0; 1636af538404SDmitry Karpeev for (i = 0; i < Mdomains; ++i) { 1637af538404SDmitry Karpeev maxwidth = M / Mdomains + ((M % Mdomains) > i); /* Maximal width of subdomain */ 163863a3b9bcSJacob Faibussowitsch PetscCheck(maxwidth >= 2, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many %" PetscInt_FMT " subdomains in the horizontal direction for mesh width %" PetscInt_FMT, Mdomains, M); 1639eec7e3faSDmitry Karpeev /* Horizontal domain limits with an overlap. */ 1640eec7e3faSDmitry Karpeev xleft = PetscMax(xstart - overlap, 0); 1641eec7e3faSDmitry Karpeev xright = PetscMin(xstart + maxwidth + overlap, M); 1642af538404SDmitry Karpeev /* 1643f1580f4eSBarry Smith Determine whether this subdomain intersects this rank's ownership range of pc->pmat. 1644af538404SDmitry Karpeev */ 1645c3518bceSDmitry Karpeev PCGASMLocalSubdomainBounds2D(M, N, xleft, ylow, xright, yhigh, first, last, (&xleft_loc), (&ylow_loc), (&xright_loc), (&yhigh_loc), (&nidx)); 16462fa5cd67SKarl Rupp if (nidx) ++s; 1647af538404SDmitry Karpeev xstart += maxwidth; 1648af538404SDmitry Karpeev } /* for (i = 0; i < Mdomains; ++i) */ 1649af538404SDmitry Karpeev ystart += maxheight; 1650af538404SDmitry Karpeev } /* for (j = 0; j < Ndomains; ++j) */ 16512fa5cd67SKarl Rupp 1652af538404SDmitry Karpeev /* Now we can allocate the necessary number of ISs. */ 1653af538404SDmitry Karpeev *nsub = s; 16549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(*nsub, is)); 16559566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(*nsub, is_local)); 1656af538404SDmitry Karpeev s = 0; 1657af538404SDmitry Karpeev ystart = 0; 1658af538404SDmitry Karpeev for (j = 0; j < Ndomains; ++j) { 1659af538404SDmitry Karpeev maxheight = N / Ndomains + ((N % Ndomains) > j); /* Maximal height of subdomain */ 1660da81f932SPierre Jolivet PetscCheck(maxheight >= 2, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many %" PetscInt_FMT " subdomains in the vertical direction for mesh height %" PetscInt_FMT, Ndomains, N); 1661af538404SDmitry Karpeev /* Vertical domain limits with an overlap. */ 1662eec7e3faSDmitry Karpeev y[0][0] = PetscMax(ystart - overlap, 0); 1663eec7e3faSDmitry Karpeev y[0][1] = PetscMin(ystart + maxheight + overlap, N); 1664eec7e3faSDmitry Karpeev /* Vertical domain limits without an overlap. */ 1665eec7e3faSDmitry Karpeev y[1][0] = ystart; 1666eec7e3faSDmitry Karpeev y[1][1] = PetscMin(ystart + maxheight, N); 1667eec7e3faSDmitry Karpeev xstart = 0; 1668af538404SDmitry Karpeev for (i = 0; i < Mdomains; ++i) { 1669af538404SDmitry Karpeev maxwidth = M / Mdomains + ((M % Mdomains) > i); /* Maximal width of subdomain */ 167063a3b9bcSJacob Faibussowitsch PetscCheck(maxwidth >= 2, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many %" PetscInt_FMT " subdomains in the horizontal direction for mesh width %" PetscInt_FMT, Mdomains, M); 1671af538404SDmitry Karpeev /* Horizontal domain limits with an overlap. */ 1672eec7e3faSDmitry Karpeev x[0][0] = PetscMax(xstart - overlap, 0); 1673eec7e3faSDmitry Karpeev x[0][1] = PetscMin(xstart + maxwidth + overlap, M); 1674eec7e3faSDmitry Karpeev /* Horizontal domain limits without an overlap. */ 1675eec7e3faSDmitry Karpeev x[1][0] = xstart; 1676eec7e3faSDmitry Karpeev x[1][1] = PetscMin(xstart + maxwidth, M); 16772bbb417fSDmitry Karpeev /* 1678f1580f4eSBarry Smith Determine whether this domain intersects this rank's ownership range of pc->pmat. 16792bbb417fSDmitry Karpeev Do this twice: first for the domains with overlaps, and once without. 16802bbb417fSDmitry Karpeev During the first pass create the subcommunicators, and use them on the second pass as well. 16812bbb417fSDmitry Karpeev */ 16822bbb417fSDmitry Karpeev for (q = 0; q < 2; ++q) { 1683cc96b2e5SBarry Smith PetscBool split = PETSC_FALSE; 16842bbb417fSDmitry Karpeev /* 16852bbb417fSDmitry Karpeev domain limits, (xleft, xright) and (ylow, yheigh) are adjusted 16862bbb417fSDmitry Karpeev according to whether the domain with an overlap or without is considered. 16872bbb417fSDmitry Karpeev */ 16889371c9d4SSatish Balay xleft = x[q][0]; 16899371c9d4SSatish Balay xright = x[q][1]; 16909371c9d4SSatish Balay ylow = y[q][0]; 16919371c9d4SSatish Balay yhigh = y[q][1]; 1692c3518bceSDmitry Karpeev PCGASMLocalSubdomainBounds2D(M, N, xleft, ylow, xright, yhigh, first, last, (&xleft_loc), (&ylow_loc), (&xright_loc), (&yhigh_loc), (&nidx)); 1693af538404SDmitry Karpeev nidx *= dof; 1694eec7e3faSDmitry Karpeev n[q] = nidx; 16952bbb417fSDmitry Karpeev /* 1696eec7e3faSDmitry Karpeev Based on the counted number of indices in the local domain *with an overlap*, 1697f1580f4eSBarry Smith construct a subcommunicator of all the MPI ranks supporting this domain. 1698eec7e3faSDmitry Karpeev Observe that a domain with an overlap might have nontrivial local support, 1699eec7e3faSDmitry Karpeev while the domain without an overlap might not. Hence, the decision to participate 1700eec7e3faSDmitry Karpeev in the subcommunicator must be based on the domain with an overlap. 17012bbb417fSDmitry Karpeev */ 17022bbb417fSDmitry Karpeev if (q == 0) { 17032fa5cd67SKarl Rupp if (nidx) color = 1; 17042fa5cd67SKarl Rupp else color = MPI_UNDEFINED; 17059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_split(comm, color, rank, &subcomm)); 1706cc96b2e5SBarry Smith split = PETSC_TRUE; 17072bbb417fSDmitry Karpeev } 1708af538404SDmitry Karpeev /* 1709eec7e3faSDmitry Karpeev Proceed only if the number of local indices *with an overlap* is nonzero. 1710af538404SDmitry Karpeev */ 1711eec7e3faSDmitry Karpeev if (n[0]) { 17122fa5cd67SKarl Rupp if (q == 0) xis = is; 1713af538404SDmitry Karpeev if (q == 1) { 1714af538404SDmitry Karpeev /* 1715eec7e3faSDmitry Karpeev The IS for the no-overlap subdomain shares a communicator with the overlapping domain. 1716af538404SDmitry Karpeev Moreover, if the overlap is zero, the two ISs are identical. 1717af538404SDmitry Karpeev */ 1718b1a0a8a3SJed Brown if (overlap == 0) { 1719eec7e3faSDmitry Karpeev (*is_local)[s] = (*is)[s]; 17209566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)(*is)[s])); 17212bbb417fSDmitry Karpeev continue; 1722d34fcf5fSBarry Smith } else { 17236a4f0f73SDmitry Karpeev xis = is_local; 1724eec7e3faSDmitry Karpeev subcomm = ((PetscObject)(*is)[s])->comm; 17252bbb417fSDmitry Karpeev } 1726af538404SDmitry Karpeev } /* if (q == 1) */ 17270298fd71SBarry Smith idx = NULL; 17289566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nidx, &idx)); 1729eec7e3faSDmitry Karpeev if (nidx) { 17302bbb417fSDmitry Karpeev k = 0; 17312bbb417fSDmitry Karpeev for (jj = ylow_loc; jj < yhigh_loc; ++jj) { 1732af538404SDmitry Karpeev PetscInt x0 = (jj == ylow_loc) ? xleft_loc : xleft; 1733af538404SDmitry Karpeev PetscInt x1 = (jj == yhigh_loc - 1) ? xright_loc : xright; 1734af538404SDmitry Karpeev kk = dof * (M * jj + x0); 17352bbb417fSDmitry Karpeev for (ii = x0; ii < x1; ++ii) { 1736ad540459SPierre Jolivet for (d = 0; d < dof; ++d) idx[k++] = kk++; 1737b1a0a8a3SJed Brown } 1738b1a0a8a3SJed Brown } 1739eec7e3faSDmitry Karpeev } 17409566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(subcomm, nidx, idx, PETSC_OWN_POINTER, (*xis) + s)); 174148a46eb9SPierre Jolivet if (split) PetscCallMPI(MPI_Comm_free(&subcomm)); 1742eec7e3faSDmitry Karpeev } /* if (n[0]) */ 17432bbb417fSDmitry Karpeev } /* for (q = 0; q < 2; ++q) */ 17442fa5cd67SKarl Rupp if (n[0]) ++s; 1745af538404SDmitry Karpeev xstart += maxwidth; 1746af538404SDmitry Karpeev } /* for (i = 0; i < Mdomains; ++i) */ 17472bbb417fSDmitry Karpeev ystart += maxheight; 1748af538404SDmitry Karpeev } /* for (j = 0; j < Ndomains; ++j) */ 17493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1750b1a0a8a3SJed Brown } 1751b1a0a8a3SJed Brown 1752b1a0a8a3SJed Brown /*@C 1753f1580f4eSBarry Smith PCGASMGetSubdomains - Gets the subdomains supported on this MPI rank 1754f1580f4eSBarry Smith for the `PCGASM` additive Schwarz preconditioner. 1755b1a0a8a3SJed Brown 1756b1a0a8a3SJed Brown Not Collective 1757b1a0a8a3SJed Brown 1758b1a0a8a3SJed Brown Input Parameter: 1759b1a0a8a3SJed Brown . pc - the preconditioner context 1760b1a0a8a3SJed Brown 1761b1a0a8a3SJed Brown Output Parameters: 1762f1580f4eSBarry Smith + n - the number of subdomains for this MPI rank (default value = 1) 176320f4b53cSBarry Smith . iis - the index sets that define the inner subdomains (without overlap) supported on this rank (can be `NULL`) 176420f4b53cSBarry Smith - ois - the index sets that define the outer subdomains (with overlap) supported on this rank (can be `NULL`) 176520f4b53cSBarry Smith 176620f4b53cSBarry Smith Level: advanced 1767b1a0a8a3SJed Brown 1768f1580f4eSBarry Smith Note: 1769f1580f4eSBarry Smith The user is responsible for destroying the `IS`s and freeing the returned arrays. 1770f1580f4eSBarry Smith The `IS` numbering is in the parallel, global numbering of the vector. 1771b1a0a8a3SJed Brown 1772f1580f4eSBarry Smith .seealso: `PCGASM`, `PCGASMSetOverlap()`, `PCGASMGetSubKSP()`, `PCGASMCreateSubdomains2D()`, 1773db781477SPatrick Sanan `PCGASMSetSubdomains()`, `PCGASMGetSubmatrices()` 1774b1a0a8a3SJed Brown @*/ 1775d71ae5a4SJacob Faibussowitsch PetscErrorCode PCGASMGetSubdomains(PC pc, PetscInt *n, IS *iis[], IS *ois[]) 1776d71ae5a4SJacob Faibussowitsch { 1777f746d493SDmitry Karpeev PC_GASM *osm; 1778b1a0a8a3SJed Brown PetscBool match; 17796a4f0f73SDmitry Karpeev PetscInt i; 17805fd66863SKarl Rupp 1781b1a0a8a3SJed Brown PetscFunctionBegin; 1782b1a0a8a3SJed Brown PetscValidHeaderSpecific(pc, PC_CLASSID, 1); 17839566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)pc, PCGASM, &match)); 178428b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)pc), PETSC_ERR_ARG_WRONG, "Incorrect object type: expected %s, got %s instead", PCGASM, ((PetscObject)pc)->type_name); 1785f746d493SDmitry Karpeev osm = (PC_GASM *)pc->data; 1786ab3e923fSDmitry Karpeev if (n) *n = osm->n; 17871baa6e33SBarry Smith if (iis) PetscCall(PetscMalloc1(osm->n, iis)); 17881baa6e33SBarry Smith if (ois) PetscCall(PetscMalloc1(osm->n, ois)); 17896a4f0f73SDmitry Karpeev if (iis || ois) { 17906a4f0f73SDmitry Karpeev for (i = 0; i < osm->n; ++i) { 17916a4f0f73SDmitry Karpeev if (iis) (*iis)[i] = osm->iis[i]; 17926a4f0f73SDmitry Karpeev if (ois) (*ois)[i] = osm->ois[i]; 17936a4f0f73SDmitry Karpeev } 1794b1a0a8a3SJed Brown } 17953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1796b1a0a8a3SJed Brown } 1797b1a0a8a3SJed Brown 1798b1a0a8a3SJed Brown /*@C 1799f1580f4eSBarry Smith PCGASMGetSubmatrices - Gets the local submatrices (for this MPI rank 1800f1580f4eSBarry Smith only) for the `PCGASM` additive Schwarz preconditioner. 1801b1a0a8a3SJed Brown 1802b1a0a8a3SJed Brown Not Collective 1803b1a0a8a3SJed Brown 1804b1a0a8a3SJed Brown Input Parameter: 1805b1a0a8a3SJed Brown . pc - the preconditioner context 1806b1a0a8a3SJed Brown 1807b1a0a8a3SJed Brown Output Parameters: 1808f1580f4eSBarry Smith + n - the number of matrices for this MPI rank (default value = 1) 1809b1a0a8a3SJed Brown - mat - the matrices 1810b1a0a8a3SJed Brown 1811f1580f4eSBarry Smith Note: 1812f1580f4eSBarry Smith Matrices returned by this routine have the same communicators as the index sets (IS) 1813f1580f4eSBarry Smith used to define subdomains in `PCGASMSetSubdomains()` 1814f1580f4eSBarry Smith 1815b1a0a8a3SJed Brown Level: advanced 1816b1a0a8a3SJed Brown 1817f1580f4eSBarry Smith .seealso: `PCGASM`, `PCGASMSetOverlap()`, `PCGASMGetSubKSP()`, 1818db781477SPatrick Sanan `PCGASMCreateSubdomains2D()`, `PCGASMSetSubdomains()`, `PCGASMGetSubdomains()` 1819b1a0a8a3SJed Brown @*/ 1820d71ae5a4SJacob Faibussowitsch PetscErrorCode PCGASMGetSubmatrices(PC pc, PetscInt *n, Mat *mat[]) 1821d71ae5a4SJacob Faibussowitsch { 1822f746d493SDmitry Karpeev PC_GASM *osm; 1823b1a0a8a3SJed Brown PetscBool match; 1824b1a0a8a3SJed Brown 1825b1a0a8a3SJed Brown PetscFunctionBegin; 1826b1a0a8a3SJed Brown PetscValidHeaderSpecific(pc, PC_CLASSID, 1); 1827b1a0a8a3SJed Brown PetscValidIntPointer(n, 2); 1828b1a0a8a3SJed Brown if (mat) PetscValidPointer(mat, 3); 182928b400f6SJacob Faibussowitsch PetscCheck(pc->setupcalled, PetscObjectComm((PetscObject)pc), PETSC_ERR_ARG_WRONGSTATE, "Must call after KSPSetUp() or PCSetUp()."); 18309566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)pc, PCGASM, &match)); 183128b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)pc), PETSC_ERR_ARG_WRONG, "Expected %s, got %s instead", PCGASM, ((PetscObject)pc)->type_name); 1832f746d493SDmitry Karpeev osm = (PC_GASM *)pc->data; 1833ab3e923fSDmitry Karpeev if (n) *n = osm->n; 1834b1a0a8a3SJed Brown if (mat) *mat = osm->pmat; 18353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1836b1a0a8a3SJed Brown } 1837d709ea83SDmitry Karpeev 1838d709ea83SDmitry Karpeev /*@ 1839f1580f4eSBarry Smith PCGASMSetUseDMSubdomains - Indicates whether to use `DMCreateDomainDecomposition()` to define the subdomains, whenever possible for `PCGASM` 1840f1580f4eSBarry Smith 1841d709ea83SDmitry Karpeev Logically Collective 1842d709ea83SDmitry Karpeev 1843d8d19677SJose E. Roman Input Parameters: 1844d709ea83SDmitry Karpeev + pc - the preconditioner 1845f1580f4eSBarry Smith - flg - boolean indicating whether to use subdomains defined by the `DM` 1846d709ea83SDmitry Karpeev 1847d709ea83SDmitry Karpeev Options Database Key: 18488f3b4b4dSDmitry Karpeev . -pc_gasm_dm_subdomains -pc_gasm_overlap -pc_gasm_total_subdomains 1849d709ea83SDmitry Karpeev 1850d709ea83SDmitry Karpeev Level: intermediate 1851d709ea83SDmitry Karpeev 1852f1580f4eSBarry Smith Note: 1853f1580f4eSBarry Smith `PCGASMSetSubdomains()`, `PCGASMSetTotalSubdomains()` or `PCGASMSetOverlap()` take precedence over `PCGASMSetUseDMSubdomains()`, 1854f1580f4eSBarry Smith so setting `PCGASMSetSubdomains()` with nontrivial subdomain ISs or any of `PCGASMSetTotalSubdomains()` and `PCGASMSetOverlap()` 18558f3b4b4dSDmitry Karpeev automatically turns the latter off. 1856d709ea83SDmitry Karpeev 1857f1580f4eSBarry Smith .seealso: `PCGASM`, `PCGASMGetUseDMSubdomains()`, `PCGASMSetSubdomains()`, `PCGASMSetOverlap()` 1858db781477SPatrick Sanan `PCGASMCreateSubdomains2D()` 1859d709ea83SDmitry Karpeev @*/ 1860d71ae5a4SJacob Faibussowitsch PetscErrorCode PCGASMSetUseDMSubdomains(PC pc, PetscBool flg) 1861d71ae5a4SJacob Faibussowitsch { 1862d709ea83SDmitry Karpeev PC_GASM *osm = (PC_GASM *)pc->data; 1863d709ea83SDmitry Karpeev PetscBool match; 1864d709ea83SDmitry Karpeev 1865d709ea83SDmitry Karpeev PetscFunctionBegin; 1866d709ea83SDmitry Karpeev PetscValidHeaderSpecific(pc, PC_CLASSID, 1); 1867d709ea83SDmitry Karpeev PetscValidLogicalCollectiveBool(pc, flg, 2); 186828b400f6SJacob Faibussowitsch PetscCheck(!pc->setupcalled, ((PetscObject)pc)->comm, PETSC_ERR_ARG_WRONGSTATE, "Not for a setup PC."); 18699566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)pc, PCGASM, &match)); 1870d709ea83SDmitry Karpeev if (match) { 1871ad540459SPierre Jolivet if (!osm->user_subdomains && osm->N == PETSC_DETERMINE && osm->overlap < 0) osm->dm_subdomains = flg; 18728f3b4b4dSDmitry Karpeev } 18733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1874d709ea83SDmitry Karpeev } 1875d709ea83SDmitry Karpeev 1876d709ea83SDmitry Karpeev /*@ 1877f1580f4eSBarry Smith PCGASMGetUseDMSubdomains - Returns flag indicating whether to use `DMCreateDomainDecomposition()` to define the subdomains, whenever possible with `PCGASM` 1878f1580f4eSBarry Smith 1879d709ea83SDmitry Karpeev Not Collective 1880d709ea83SDmitry Karpeev 1881d709ea83SDmitry Karpeev Input Parameter: 1882d709ea83SDmitry Karpeev . pc - the preconditioner 1883d709ea83SDmitry Karpeev 1884d709ea83SDmitry Karpeev Output Parameter: 1885f1580f4eSBarry Smith . flg - boolean indicating whether to use subdomains defined by the `DM` 1886d709ea83SDmitry Karpeev 1887d709ea83SDmitry Karpeev Level: intermediate 1888d709ea83SDmitry Karpeev 1889f1580f4eSBarry Smith .seealso: `PCGASM`, `PCGASMSetUseDMSubdomains()`, `PCGASMSetOverlap()` 1890db781477SPatrick Sanan `PCGASMCreateSubdomains2D()` 1891d709ea83SDmitry Karpeev @*/ 1892d71ae5a4SJacob Faibussowitsch PetscErrorCode PCGASMGetUseDMSubdomains(PC pc, PetscBool *flg) 1893d71ae5a4SJacob Faibussowitsch { 1894d709ea83SDmitry Karpeev PC_GASM *osm = (PC_GASM *)pc->data; 1895d709ea83SDmitry Karpeev PetscBool match; 1896d709ea83SDmitry Karpeev 1897d709ea83SDmitry Karpeev PetscFunctionBegin; 1898d709ea83SDmitry Karpeev PetscValidHeaderSpecific(pc, PC_CLASSID, 1); 1899534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 19009566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)pc, PCGASM, &match)); 1901d709ea83SDmitry Karpeev if (match) { 1902d709ea83SDmitry Karpeev if (flg) *flg = osm->dm_subdomains; 1903d709ea83SDmitry Karpeev } 19043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1905d709ea83SDmitry Karpeev } 1906