1 #define PETSCKSP_DLL 2 3 #include "src/ksp/pc/impls/is/nn/nn.h" 4 5 /* -------------------------------------------------------------------------- */ 6 /* 7 PCSetUp_NN - Prepares for the use of the NN preconditioner 8 by setting data structures and options. 9 10 Input Parameter: 11 . pc - the preconditioner context 12 13 Application Interface Routine: PCSetUp() 14 15 Notes: 16 The interface routine PCSetUp() is not usually called directly by 17 the user, but instead is called by PCApply() if necessary. 18 */ 19 #undef __FUNCT__ 20 #define __FUNCT__ "PCSetUp_NN" 21 static PetscErrorCode PCSetUp_NN(PC pc) 22 { 23 PetscErrorCode ierr; 24 25 PetscFunctionBegin; 26 if (!pc->setupcalled) { 27 /* Set up all the "iterative substructuring" common block */ 28 ierr = PCISSetUp(pc);CHKERRQ(ierr); 29 /* Create the coarse matrix. */ 30 ierr = PCNNCreateCoarseMatrix(pc);CHKERRQ(ierr); 31 } 32 PetscFunctionReturn(0); 33 } 34 35 /* -------------------------------------------------------------------------- */ 36 /* 37 PCApply_NN - Applies the NN preconditioner to a vector. 38 39 Input Parameters: 40 . pc - the preconditioner context 41 . r - input vector (global) 42 43 Output Parameter: 44 . z - output vector (global) 45 46 Application Interface Routine: PCApply() 47 */ 48 #undef __FUNCT__ 49 #define __FUNCT__ "PCApply_NN" 50 static PetscErrorCode PCApply_NN(PC pc,Vec r,Vec z) 51 { 52 PC_IS *pcis = (PC_IS*)(pc->data); 53 PetscErrorCode ierr; 54 PetscScalar m_one = -1.0; 55 Vec w = pcis->vec1_global; 56 57 PetscFunctionBegin; 58 /* 59 Dirichlet solvers. 60 Solving $ B_I^{(i)}r_I^{(i)} $ at each processor. 61 Storing the local results at vec2_D 62 */ 63 ierr = VecScatterBegin(r,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD,pcis->global_to_D);CHKERRQ(ierr); 64 ierr = VecScatterEnd (r,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD,pcis->global_to_D);CHKERRQ(ierr); 65 ierr = KSPSolve(pcis->ksp_D,pcis->vec1_D,pcis->vec2_D);CHKERRQ(ierr); 66 67 /* 68 Computing $ r_B - \sum_j \tilde R_j^T A_{BI}^{(j)} (B_I^{(j)}r_I^{(j)}) $ . 69 Storing the result in the interface portion of the global vector w. 70 */ 71 ierr = MatMult(pcis->A_BI,pcis->vec2_D,pcis->vec1_B);CHKERRQ(ierr); 72 ierr = VecScale(pcis->vec1_B,m_one);CHKERRQ(ierr); 73 ierr = VecCopy(r,w);CHKERRQ(ierr); 74 ierr = VecScatterBegin(pcis->vec1_B,w,ADD_VALUES,SCATTER_REVERSE,pcis->global_to_B);CHKERRQ(ierr); 75 ierr = VecScatterEnd (pcis->vec1_B,w,ADD_VALUES,SCATTER_REVERSE,pcis->global_to_B);CHKERRQ(ierr); 76 77 /* 78 Apply the interface preconditioner 79 */ 80 ierr = PCNNApplyInterfacePreconditioner(pc,w,z,pcis->work_N,pcis->vec1_B,pcis->vec2_B,pcis->vec3_B,pcis->vec1_D, 81 pcis->vec3_D,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr); 82 83 /* 84 Computing $ t_I^{(i)} = A_{IB}^{(i)} \tilde R_i z_B $ 85 The result is stored in vec1_D. 86 */ 87 ierr = VecScatterBegin(z,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD,pcis->global_to_B);CHKERRQ(ierr); 88 ierr = VecScatterEnd (z,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD,pcis->global_to_B);CHKERRQ(ierr); 89 ierr = MatMult(pcis->A_IB,pcis->vec1_B,pcis->vec1_D);CHKERRQ(ierr); 90 91 /* 92 Dirichlet solvers. 93 Computing $ B_I^{(i)}t_I^{(i)} $ and sticking into the global vector the blocks 94 $ B_I^{(i)}r_I^{(i)} - B_I^{(i)}t_I^{(i)} $. 95 */ 96 ierr = VecScatterBegin(pcis->vec2_D,z,INSERT_VALUES,SCATTER_REVERSE,pcis->global_to_D);CHKERRQ(ierr); 97 ierr = VecScatterEnd (pcis->vec2_D,z,INSERT_VALUES,SCATTER_REVERSE,pcis->global_to_D);CHKERRQ(ierr); 98 ierr = KSPSolve(pcis->ksp_D,pcis->vec1_D,pcis->vec2_D);CHKERRQ(ierr); 99 ierr = VecScale(pcis->vec2_D,m_one);CHKERRQ(ierr); 100 ierr = VecScatterBegin(pcis->vec2_D,z,ADD_VALUES,SCATTER_REVERSE,pcis->global_to_D);CHKERRQ(ierr); 101 ierr = VecScatterEnd (pcis->vec2_D,z,ADD_VALUES,SCATTER_REVERSE,pcis->global_to_D);CHKERRQ(ierr); 102 PetscFunctionReturn(0); 103 } 104 105 /* -------------------------------------------------------------------------- */ 106 /* 107 PCDestroy_NN - Destroys the private context for the NN preconditioner 108 that was created with PCCreate_NN(). 109 110 Input Parameter: 111 . pc - the preconditioner context 112 113 Application Interface Routine: PCDestroy() 114 */ 115 #undef __FUNCT__ 116 #define __FUNCT__ "PCDestroy_NN" 117 static PetscErrorCode PCDestroy_NN(PC pc) 118 { 119 PC_NN *pcnn = (PC_NN*)pc->data; 120 PetscErrorCode ierr; 121 122 PetscFunctionBegin; 123 ierr = PCISDestroy(pc);CHKERRQ(ierr); 124 125 if (pcnn->coarse_mat) {ierr = MatDestroy(pcnn->coarse_mat);CHKERRQ(ierr);} 126 if (pcnn->coarse_x) {ierr = VecDestroy(pcnn->coarse_x);CHKERRQ(ierr);} 127 if (pcnn->coarse_b) {ierr = VecDestroy(pcnn->coarse_b);CHKERRQ(ierr);} 128 if (pcnn->ksp_coarse) {ierr = KSPDestroy(pcnn->ksp_coarse);CHKERRQ(ierr);} 129 if (pcnn->DZ_IN) { 130 if (pcnn->DZ_IN[0]) {ierr = PetscFree(pcnn->DZ_IN[0]);CHKERRQ(ierr);} 131 ierr = PetscFree(pcnn->DZ_IN);CHKERRQ(ierr); 132 } 133 134 /* 135 Free the private data structure that was hanging off the PC 136 */ 137 ierr = PetscFree(pcnn);CHKERRQ(ierr); 138 PetscFunctionReturn(0); 139 } 140 141 /* -------------------------------------------------------------------------- */ 142 /*MC 143 PCNN - Balancing Neumann-Neumann for scalar elliptic PDEs. 144 145 Options Database Keys: 146 + -pc_nn_turn_off_first_balancing - do not balance the residual before solving the local Neumann problems 147 (this skips the first coarse grid solve in the preconditioner) 148 . -pc_nn_turn_off_second_balancing - do not balance the solution solving the local Neumann problems 149 (this skips the second coarse grid solve in the preconditioner) 150 . -pc_is_damp_fixed <fact> - 151 . -pc_is_remove_nullspace_fixed - 152 . -pc_is_set_damping_factor_floating <fact> - 153 . -pc_is_not_damp_floating - 154 + -pc_is_not_remove_nullspace_floating - 155 156 Level: intermediate 157 158 Notes: The matrix used with this preconditioner must be of type MATIS 159 160 Unlike more 'conventional' Neumann-Neumann preconditioners this iterates over ALL the 161 degrees of freedom, NOT just those on the interface (this allows the use of approximate solvers 162 on the subdomains; though in our experience using approximate solvers is slower.). 163 164 Options for the coarse grid preconditioner can be set with -nn_coarse_pc_xxx 165 Options for the Dirichlet subproblem preconditioner can be set with -is_localD_pc_xxx 166 Options for the Neumann subproblem preconditioner can be set with -is_localN_pc_xxx 167 168 Contributed by Paulo Goldfeld 169 170 .seealso: PCCreate(), PCSetType(), PCType (for list of available types), PC, MatIS 171 M*/ 172 EXTERN_C_BEGIN 173 #undef __FUNCT__ 174 #define __FUNCT__ "PCCreate_NN" 175 PetscErrorCode PETSCKSP_DLLEXPORT PCCreate_NN(PC pc) 176 { 177 PetscErrorCode ierr; 178 PC_NN *pcnn; 179 180 PetscFunctionBegin; 181 /* 182 Creates the private data structure for this preconditioner and 183 attach it to the PC object. 184 */ 185 ierr = PetscNew(PC_NN,&pcnn);CHKERRQ(ierr); 186 pc->data = (void*)pcnn; 187 188 /* 189 Logs the memory usage; this is not needed but allows PETSc to 190 monitor how much memory is being used for various purposes. 191 */ 192 ierr = PetscLogObjectMemory(pc,sizeof(PC_NN)+sizeof(PC_IS));CHKERRQ(ierr); /* Is this the right thing to do? */ 193 194 ierr = PCISCreate(pc);CHKERRQ(ierr); 195 pcnn->coarse_mat = 0; 196 pcnn->coarse_x = 0; 197 pcnn->coarse_b = 0; 198 pcnn->ksp_coarse = 0; 199 pcnn->DZ_IN = 0; 200 201 /* 202 Set the pointers for the functions that are provided above. 203 Now when the user-level routines (such as PCApply(), PCDestroy(), etc.) 204 are called, they will automatically call these functions. Note we 205 choose not to provide a couple of these functions since they are 206 not needed. 207 */ 208 pc->ops->apply = PCApply_NN; 209 pc->ops->applytranspose = 0; 210 pc->ops->setup = PCSetUp_NN; 211 pc->ops->destroy = PCDestroy_NN; 212 pc->ops->view = 0; 213 pc->ops->applyrichardson = 0; 214 pc->ops->applysymmetricleft = 0; 215 pc->ops->applysymmetricright = 0; 216 PetscFunctionReturn(0); 217 } 218 EXTERN_C_END 219 220 221 /* -------------------------------------------------------------------------- */ 222 /* 223 PCNNCreateCoarseMatrix - 224 */ 225 #undef __FUNCT__ 226 #define __FUNCT__ "PCNNCreateCoarseMatrix" 227 PetscErrorCode PCNNCreateCoarseMatrix (PC pc) 228 { 229 MPI_Request *send_request, *recv_request; 230 PetscErrorCode ierr; 231 PetscInt i, j, k; 232 PetscScalar* mat; /* Sub-matrix with this subdomain's contribution to the coarse matrix */ 233 PetscScalar** DZ_OUT; /* proc[k].DZ_OUT[i][] = bit of vector to be sent from processor k to processor i */ 234 235 /* aliasing some names */ 236 PC_IS* pcis = (PC_IS*)(pc->data); 237 PC_NN* pcnn = (PC_NN*)pc->data; 238 PetscInt n_neigh = pcis->n_neigh; 239 PetscInt* neigh = pcis->neigh; 240 PetscInt* n_shared = pcis->n_shared; 241 PetscInt** shared = pcis->shared; 242 PetscScalar** DZ_IN; /* Must be initialized after memory allocation. */ 243 244 PetscFunctionBegin; 245 /* Allocate memory for mat (the +1 is to handle the case n_neigh equal to zero) */ 246 ierr = PetscMalloc((n_neigh*n_neigh+1)*sizeof(PetscScalar),&mat);CHKERRQ(ierr); 247 248 /* Allocate memory for DZ */ 249 /* Notice that DZ_OUT[0] is allocated some space that is never used. */ 250 /* This is just in order to DZ_OUT and DZ_IN to have exactly the same form. */ 251 { 252 PetscInt size_of_Z = 0; 253 ierr = PetscMalloc ((n_neigh+1)*sizeof(PetscScalar*),&pcnn->DZ_IN);CHKERRQ(ierr); 254 DZ_IN = pcnn->DZ_IN; 255 ierr = PetscMalloc ((n_neigh+1)*sizeof(PetscScalar*),&DZ_OUT);CHKERRQ(ierr); 256 for (i=0; i<n_neigh; i++) { 257 size_of_Z += n_shared[i]; 258 } 259 ierr = PetscMalloc ((size_of_Z+1)*sizeof(PetscScalar),&DZ_IN[0]);CHKERRQ(ierr); 260 ierr = PetscMalloc ((size_of_Z+1)*sizeof(PetscScalar),&DZ_OUT[0]);CHKERRQ(ierr); 261 } 262 for (i=1; i<n_neigh; i++) { 263 DZ_IN[i] = DZ_IN [i-1] + n_shared[i-1]; 264 DZ_OUT[i] = DZ_OUT[i-1] + n_shared[i-1]; 265 } 266 267 /* Set the values of DZ_OUT, in order to send this info to the neighbours */ 268 /* First, set the auxiliary array pcis->work_N. */ 269 ierr = PCISScatterArrayNToVecB(pcis->work_N,pcis->D,INSERT_VALUES,SCATTER_REVERSE,pc);CHKERRQ(ierr); 270 for (i=1; i<n_neigh; i++){ 271 for (j=0; j<n_shared[i]; j++) { 272 DZ_OUT[i][j] = pcis->work_N[shared[i][j]]; 273 } 274 } 275 276 /* Non-blocking send/receive the common-interface chunks of scaled nullspaces */ 277 /* Notice that send_request[] and recv_request[] could have one less element. */ 278 /* We make them longer to have request[i] corresponding to neigh[i]. */ 279 { 280 PetscMPIInt tag; 281 ierr = PetscObjectGetNewTag((PetscObject)pc,&tag);CHKERRQ(ierr); 282 ierr = PetscMalloc((2*(n_neigh)+1)*sizeof(MPI_Request),&send_request);CHKERRQ(ierr); 283 recv_request = send_request + (n_neigh); 284 for (i=1; i<n_neigh; i++) { 285 ierr = MPI_Isend((void*)(DZ_OUT[i]),n_shared[i],MPIU_SCALAR,neigh[i],tag,pc->comm,&(send_request[i]));CHKERRQ(ierr); 286 ierr = MPI_Irecv((void*)(DZ_IN [i]),n_shared[i],MPIU_SCALAR,neigh[i],tag,pc->comm,&(recv_request[i]));CHKERRQ(ierr); 287 } 288 } 289 290 /* Set DZ_IN[0][] (recall that neigh[0]==rank, always) */ 291 for(j=0; j<n_shared[0]; j++) { 292 DZ_IN[0][j] = pcis->work_N[shared[0][j]]; 293 } 294 295 /* Start computing with local D*Z while communication goes on. */ 296 /* Apply Schur complement. The result is "stored" in vec (more */ 297 /* precisely, vec points to the result, stored in pc_nn->vec1_B) */ 298 /* and also scattered to pcnn->work_N. */ 299 ierr = PCNNApplySchurToChunk(pc,n_shared[0],shared[0],DZ_IN[0],pcis->work_N,pcis->vec1_B, 300 pcis->vec2_B,pcis->vec1_D,pcis->vec2_D);CHKERRQ(ierr); 301 302 /* Compute the first column, while completing the receiving. */ 303 for (i=0; i<n_neigh; i++) { 304 MPI_Status stat; 305 PetscMPIInt ind=0; 306 if (i>0) { ierr = MPI_Waitany(n_neigh-1,recv_request+1,&ind,&stat);CHKERRQ(ierr); ind++;} 307 mat[ind*n_neigh+0] = 0.0; 308 for (k=0; k<n_shared[ind]; k++) { 309 mat[ind*n_neigh+0] += DZ_IN[ind][k] * pcis->work_N[shared[ind][k]]; 310 } 311 } 312 313 /* Compute the remaining of the columns */ 314 for (j=1; j<n_neigh; j++) { 315 ierr = PCNNApplySchurToChunk(pc,n_shared[j],shared[j],DZ_IN[j],pcis->work_N,pcis->vec1_B, 316 pcis->vec2_B,pcis->vec1_D,pcis->vec2_D);CHKERRQ(ierr); 317 for (i=0; i<n_neigh; i++) { 318 mat[i*n_neigh+j] = 0.0; 319 for (k=0; k<n_shared[i]; k++) { 320 mat[i*n_neigh+j] += DZ_IN[i][k] * pcis->work_N[shared[i][k]]; 321 } 322 } 323 } 324 325 /* Complete the sending. */ 326 if (n_neigh>1) { 327 MPI_Status *stat; 328 ierr = PetscMalloc((n_neigh-1)*sizeof(MPI_Status),&stat);CHKERRQ(ierr); 329 if (n_neigh-1) {ierr = MPI_Waitall(n_neigh-1,&(send_request[1]),stat);CHKERRQ(ierr);} 330 ierr = PetscFree(stat);CHKERRQ(ierr); 331 } 332 333 /* Free the memory for the MPI requests */ 334 ierr = PetscFree(send_request);CHKERRQ(ierr); 335 336 /* Free the memory for DZ_OUT */ 337 if (DZ_OUT) { 338 if (DZ_OUT[0]) { ierr = PetscFree(DZ_OUT[0]);CHKERRQ(ierr); } 339 ierr = PetscFree(DZ_OUT);CHKERRQ(ierr); 340 } 341 342 { 343 PetscMPIInt size; 344 ierr = MPI_Comm_size(pc->comm,&size);CHKERRQ(ierr); 345 /* Create the global coarse vectors (rhs and solution). */ 346 ierr = VecCreateMPI(pc->comm,1,size,&(pcnn->coarse_b));CHKERRQ(ierr); 347 ierr = VecDuplicate(pcnn->coarse_b,&(pcnn->coarse_x));CHKERRQ(ierr); 348 /* Create and set the global coarse AIJ matrix. */ 349 ierr = MatCreate(pc->comm,&(pcnn->coarse_mat));CHKERRQ(ierr); 350 ierr = MatSetSizes(pcnn->coarse_mat,1,1,size,size);CHKERRQ(ierr); 351 ierr = MatSetType(pcnn->coarse_mat,MATAIJ);CHKERRQ(ierr); 352 ierr = MatSeqAIJSetPreallocation(pcnn->coarse_mat,1,PETSC_NULL);CHKERRQ(ierr); 353 ierr = MatMPIAIJSetPreallocation(pcnn->coarse_mat,1,PETSC_NULL,1,PETSC_NULL);CHKERRQ(ierr); 354 ierr = MatSetValues(pcnn->coarse_mat,n_neigh,neigh,n_neigh,neigh,mat,ADD_VALUES);CHKERRQ(ierr); 355 ierr = MatAssemblyBegin(pcnn->coarse_mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 356 ierr = MatAssemblyEnd (pcnn->coarse_mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 357 } 358 359 { 360 PetscMPIInt rank; 361 PetscScalar one = 1.0; 362 IS is; 363 ierr = MPI_Comm_rank(pc->comm,&rank);CHKERRQ(ierr); 364 /* "Zero out" rows of not-purely-Neumann subdomains */ 365 if (pcis->pure_neumann) { /* does NOT zero the row; create an empty index set. The reason is that MatZeroRows() is collective. */ 366 ierr = ISCreateStride(pc->comm,0,0,0,&is);CHKERRQ(ierr); 367 } else { /* here it DOES zero the row, since it's not a floating subdomain. */ 368 ierr = ISCreateStride(pc->comm,1,rank,0,&is);CHKERRQ(ierr); 369 } 370 ierr = MatZeroRows(pcnn->coarse_mat,is,&one);CHKERRQ(ierr); 371 ierr = ISDestroy(is);CHKERRQ(ierr); 372 } 373 374 /* Create the coarse linear solver context */ 375 { 376 PC pc_ctx, inner_pc; 377 ierr = KSPCreate(pc->comm,&pcnn->ksp_coarse);CHKERRQ(ierr); 378 ierr = KSPSetOperators(pcnn->ksp_coarse,pcnn->coarse_mat,pcnn->coarse_mat,SAME_PRECONDITIONER);CHKERRQ(ierr); 379 ierr = KSPGetPC(pcnn->ksp_coarse,&pc_ctx);CHKERRQ(ierr); 380 ierr = PCSetType(pc_ctx,PCREDUNDANT);CHKERRQ(ierr); 381 ierr = KSPSetType(pcnn->ksp_coarse,KSPPREONLY);CHKERRQ(ierr); 382 ierr = PCRedundantGetPC(pc_ctx,&inner_pc);CHKERRQ(ierr); 383 ierr = PCSetType(inner_pc,PCLU);CHKERRQ(ierr); 384 ierr = KSPSetOptionsPrefix(pcnn->ksp_coarse,"nn_coarse_");CHKERRQ(ierr); 385 ierr = KSPSetFromOptions(pcnn->ksp_coarse);CHKERRQ(ierr); 386 /* the vectors in the following line are dummy arguments, just telling the KSP the vector size. Values are not used */ 387 ierr = KSPSetUp(pcnn->ksp_coarse);CHKERRQ(ierr); 388 } 389 390 /* Free the memory for mat */ 391 ierr = PetscFree(mat);CHKERRQ(ierr); 392 393 /* for DEBUGGING, save the coarse matrix to a file. */ 394 { 395 PetscTruth flg; 396 ierr = PetscOptionsHasName(PETSC_NULL,"-pc_nn_save_coarse_matrix",&flg);CHKERRQ(ierr); 397 if (flg) { 398 PetscViewer viewer; 399 ierr = PetscViewerASCIIOpen(PETSC_COMM_WORLD,"coarse.m",&viewer);CHKERRQ(ierr); 400 ierr = PetscViewerSetFormat(viewer,PETSC_VIEWER_ASCII_MATLAB);CHKERRQ(ierr); 401 ierr = MatView(pcnn->coarse_mat,viewer);CHKERRQ(ierr); 402 ierr = PetscViewerDestroy(viewer);CHKERRQ(ierr); 403 } 404 } 405 406 /* Set the variable pcnn->factor_coarse_rhs. */ 407 pcnn->factor_coarse_rhs = (pcis->pure_neumann) ? 1.0 : 0.0; 408 409 /* See historical note 02, at the bottom of this file. */ 410 PetscFunctionReturn(0); 411 } 412 413 /* -------------------------------------------------------------------------- */ 414 /* 415 PCNNApplySchurToChunk - 416 417 Input parameters: 418 . pcnn 419 . n - size of chunk 420 . idx - indices of chunk 421 . chunk - values 422 423 Output parameters: 424 . array_N - result of Schur complement applied to chunk, scattered to big array 425 . vec1_B - result of Schur complement applied to chunk 426 . vec2_B - garbage (used as work space) 427 . vec1_D - garbage (used as work space) 428 . vec2_D - garbage (used as work space) 429 430 */ 431 #undef __FUNCT__ 432 #define __FUNCT__ "PCNNApplySchurToChunk" 433 PetscErrorCode PCNNApplySchurToChunk(PC pc, PetscInt n, PetscInt* idx, PetscScalar *chunk, PetscScalar* array_N, Vec vec1_B, Vec vec2_B, Vec vec1_D, Vec vec2_D) 434 { 435 PetscErrorCode ierr; 436 PetscInt i; 437 PC_IS *pcis = (PC_IS*)(pc->data); 438 439 PetscFunctionBegin; 440 ierr = PetscMemzero((void*)array_N, pcis->n*sizeof(PetscScalar));CHKERRQ(ierr); 441 for (i=0; i<n; i++) { array_N[idx[i]] = chunk[i]; } 442 ierr = PCISScatterArrayNToVecB(array_N,vec2_B,INSERT_VALUES,SCATTER_FORWARD,pc);CHKERRQ(ierr); 443 ierr = PCISApplySchur(pc,vec2_B,vec1_B,(Vec)0,vec1_D,vec2_D);CHKERRQ(ierr); 444 ierr = PCISScatterArrayNToVecB(array_N,vec1_B,INSERT_VALUES,SCATTER_REVERSE,pc);CHKERRQ(ierr); 445 PetscFunctionReturn(0); 446 } 447 448 /* -------------------------------------------------------------------------- */ 449 /* 450 PCNNApplyInterfacePreconditioner - Apply the interface preconditioner, i.e., 451 the preconditioner for the Schur complement. 452 453 Input parameter: 454 . r - global vector of interior and interface nodes. The values on the interior nodes are NOT used. 455 456 Output parameters: 457 . z - global vector of interior and interface nodes. The values on the interface are the result of 458 the application of the interface preconditioner to the interface part of r. The values on the 459 interior nodes are garbage. 460 . work_N - array of local nodes (interior and interface, including ghosts); returns garbage (used as work space) 461 . vec1_B - vector of local interface nodes (including ghosts); returns garbage (used as work space) 462 . vec2_B - vector of local interface nodes (including ghosts); returns garbage (used as work space) 463 . vec3_B - vector of local interface nodes (including ghosts); returns garbage (used as work space) 464 . vec1_D - vector of local interior nodes; returns garbage (used as work space) 465 . vec2_D - vector of local interior nodes; returns garbage (used as work space) 466 . vec1_N - vector of local nodes (interior and interface, including ghosts); returns garbage (used as work space) 467 . vec2_N - vector of local nodes (interior and interface, including ghosts); returns garbage (used as work space) 468 469 */ 470 #undef __FUNCT__ 471 #define __FUNCT__ "PCNNApplyInterfacePreconditioner" 472 PetscErrorCode PCNNApplyInterfacePreconditioner (PC pc, Vec r, Vec z, PetscScalar* work_N, Vec vec1_B, Vec vec2_B, Vec vec3_B, Vec vec1_D, 473 Vec vec2_D, Vec vec1_N, Vec vec2_N) 474 { 475 PetscErrorCode ierr; 476 PC_IS* pcis = (PC_IS*)(pc->data); 477 478 PetscFunctionBegin; 479 /* 480 First balancing step. 481 */ 482 { 483 PetscTruth flg; 484 ierr = PetscOptionsHasName(PETSC_NULL,"-pc_nn_turn_off_first_balancing",&flg);CHKERRQ(ierr); 485 if (!flg) { 486 ierr = PCNNBalancing(pc,r,(Vec)0,z,vec1_B,vec2_B,(Vec)0,vec1_D,vec2_D,work_N);CHKERRQ(ierr); 487 } else { 488 ierr = VecCopy(r,z);CHKERRQ(ierr); 489 } 490 } 491 492 /* 493 Extract the local interface part of z and scale it by D 494 */ 495 ierr = VecScatterBegin(z,vec1_B,INSERT_VALUES,SCATTER_FORWARD,pcis->global_to_B);CHKERRQ(ierr); 496 ierr = VecScatterEnd (z,vec1_B,INSERT_VALUES,SCATTER_FORWARD,pcis->global_to_B);CHKERRQ(ierr); 497 ierr = VecPointwiseMult(vec2_B,pcis->D,vec1_B);CHKERRQ(ierr); 498 499 /* Neumann Solver */ 500 ierr = PCISApplyInvSchur(pc,vec2_B,vec1_B,vec1_N,vec2_N);CHKERRQ(ierr); 501 502 /* 503 Second balancing step. 504 */ 505 { 506 PetscTruth flg; 507 ierr = PetscOptionsHasName(PETSC_NULL,"-pc_turn_off_second_balancing",&flg);CHKERRQ(ierr); 508 if (!flg) { 509 ierr = PCNNBalancing(pc,r,vec1_B,z,vec2_B,vec3_B,(Vec)0,vec1_D,vec2_D,work_N);CHKERRQ(ierr); 510 } else { 511 PetscScalar zero = 0.0; 512 ierr = VecPointwiseMult(vec2_B,pcis->D,vec1_B);CHKERRQ(ierr); 513 ierr = VecSet(z,zero);CHKERRQ(ierr); 514 ierr = VecScatterBegin(vec2_B,z,ADD_VALUES,SCATTER_REVERSE,pcis->global_to_B);CHKERRQ(ierr); 515 ierr = VecScatterEnd (vec2_B,z,ADD_VALUES,SCATTER_REVERSE,pcis->global_to_B);CHKERRQ(ierr); 516 } 517 } 518 PetscFunctionReturn(0); 519 } 520 521 /* -------------------------------------------------------------------------- */ 522 /* 523 PCNNBalancing - Computes z, as given in equations (15) and (16) (if the 524 input argument u is provided), or s, as given in equations 525 (12) and (13), if the input argument u is a null vector. 526 Notice that the input argument u plays the role of u_i in 527 equation (14). The equation numbers refer to [Man93]. 528 529 Input Parameters: 530 . pcnn - NN preconditioner context. 531 . r - MPI vector of all nodes (interior and interface). It's preserved. 532 . u - (Optional) sequential vector of local interface nodes. It's preserved UNLESS vec3_B is null. 533 534 Output Parameters: 535 . z - MPI vector of interior and interface nodes. Returns s or z (see description above). 536 . vec1_B - Sequential vector of local interface nodes. Workspace. 537 . vec2_B - Sequential vector of local interface nodes. Workspace. 538 . vec3_B - (Optional) sequential vector of local interface nodes. Workspace. 539 . vec1_D - Sequential vector of local interior nodes. Workspace. 540 . vec2_D - Sequential vector of local interior nodes. Workspace. 541 . work_N - Array of all local nodes (interior and interface). Workspace. 542 543 */ 544 #undef __FUNCT__ 545 #define __FUNCT__ "PCNNBalancing" 546 PetscErrorCode PCNNBalancing (PC pc, Vec r, Vec u, Vec z, Vec vec1_B, Vec vec2_B, Vec vec3_B, 547 Vec vec1_D, Vec vec2_D, PetscScalar *work_N) 548 { 549 PetscErrorCode ierr; 550 PetscInt k; 551 PetscScalar zero = 0.0; 552 PetscScalar m_one = -1.0; 553 PetscScalar value; 554 PetscScalar* lambda; 555 PC_NN* pcnn = (PC_NN*)(pc->data); 556 PC_IS* pcis = (PC_IS*)(pc->data); 557 558 PetscFunctionBegin; 559 ierr = PetscLogEventBegin(PC_ApplyCoarse,0,0,0,0);CHKERRQ(ierr); 560 if (u) { 561 if (!vec3_B) { vec3_B = u; } 562 ierr = VecPointwiseMult(vec1_B,pcis->D,u);CHKERRQ(ierr); 563 ierr = VecSet(z,zero);CHKERRQ(ierr); 564 ierr = VecScatterBegin(vec1_B,z,ADD_VALUES,SCATTER_REVERSE,pcis->global_to_B);CHKERRQ(ierr); 565 ierr = VecScatterEnd (vec1_B,z,ADD_VALUES,SCATTER_REVERSE,pcis->global_to_B);CHKERRQ(ierr); 566 ierr = VecScatterBegin(z,vec2_B,INSERT_VALUES,SCATTER_FORWARD,pcis->global_to_B);CHKERRQ(ierr); 567 ierr = VecScatterEnd (z,vec2_B,INSERT_VALUES,SCATTER_FORWARD,pcis->global_to_B);CHKERRQ(ierr); 568 ierr = PCISApplySchur(pc,vec2_B,vec3_B,(Vec)0,vec1_D,vec2_D);CHKERRQ(ierr); 569 ierr = VecScale(vec3_B,m_one);CHKERRQ(ierr); 570 ierr = VecCopy(r,z);CHKERRQ(ierr); 571 ierr = VecScatterBegin(vec3_B,z,ADD_VALUES,SCATTER_REVERSE,pcis->global_to_B);CHKERRQ(ierr); 572 ierr = VecScatterEnd (vec3_B,z,ADD_VALUES,SCATTER_REVERSE,pcis->global_to_B);CHKERRQ(ierr); 573 } else { 574 ierr = VecCopy(r,z);CHKERRQ(ierr); 575 } 576 ierr = VecScatterBegin(z,vec2_B,INSERT_VALUES,SCATTER_FORWARD,pcis->global_to_B);CHKERRQ(ierr); 577 ierr = VecScatterEnd (z,vec2_B,INSERT_VALUES,SCATTER_FORWARD,pcis->global_to_B);CHKERRQ(ierr); 578 ierr = PCISScatterArrayNToVecB(work_N,vec2_B,INSERT_VALUES,SCATTER_REVERSE,pc);CHKERRQ(ierr); 579 for (k=0, value=0.0; k<pcis->n_shared[0]; k++) { value += pcnn->DZ_IN[0][k] * work_N[pcis->shared[0][k]]; } 580 value *= pcnn->factor_coarse_rhs; /* This factor is set in CreateCoarseMatrix(). */ 581 { 582 PetscMPIInt rank; 583 ierr = MPI_Comm_rank(pc->comm,&rank);CHKERRQ(ierr); 584 ierr = VecSetValue(pcnn->coarse_b,rank,value,INSERT_VALUES);CHKERRQ(ierr); 585 /* 586 Since we are only inserting local values (one value actually) we don't need to do the 587 reduction that tells us there is no data that needs to be moved. Hence we comment out these 588 ierr = VecAssemblyBegin(pcnn->coarse_b);CHKERRQ(ierr); 589 ierr = VecAssemblyEnd (pcnn->coarse_b);CHKERRQ(ierr); 590 */ 591 } 592 ierr = KSPSolve(pcnn->ksp_coarse,pcnn->coarse_b,pcnn->coarse_x);CHKERRQ(ierr); 593 if (!u) { ierr = VecScale(pcnn->coarse_x,m_one);CHKERRQ(ierr); } 594 ierr = VecGetArray(pcnn->coarse_x,&lambda);CHKERRQ(ierr); 595 for (k=0; k<pcis->n_shared[0]; k++) { work_N[pcis->shared[0][k]] = *lambda * pcnn->DZ_IN[0][k]; } 596 ierr = VecRestoreArray(pcnn->coarse_x,&lambda);CHKERRQ(ierr); 597 ierr = PCISScatterArrayNToVecB(work_N,vec2_B,INSERT_VALUES,SCATTER_FORWARD,pc);CHKERRQ(ierr); 598 ierr = VecSet(z,zero);CHKERRQ(ierr); 599 ierr = VecScatterBegin(vec2_B,z,ADD_VALUES,SCATTER_REVERSE,pcis->global_to_B);CHKERRQ(ierr); 600 ierr = VecScatterEnd (vec2_B,z,ADD_VALUES,SCATTER_REVERSE,pcis->global_to_B);CHKERRQ(ierr); 601 if (!u) { 602 ierr = VecScatterBegin(z,vec2_B,INSERT_VALUES,SCATTER_FORWARD,pcis->global_to_B);CHKERRQ(ierr); 603 ierr = VecScatterEnd (z,vec2_B,INSERT_VALUES,SCATTER_FORWARD,pcis->global_to_B);CHKERRQ(ierr); 604 ierr = PCISApplySchur(pc,vec2_B,vec1_B,(Vec)0,vec1_D,vec2_D);CHKERRQ(ierr); 605 ierr = VecCopy(r,z);CHKERRQ(ierr); 606 } 607 ierr = VecScatterBegin(vec1_B,z,ADD_VALUES,SCATTER_REVERSE,pcis->global_to_B);CHKERRQ(ierr); 608 ierr = VecScatterEnd (vec1_B,z,ADD_VALUES,SCATTER_REVERSE,pcis->global_to_B);CHKERRQ(ierr); 609 ierr = PetscLogEventEnd(PC_ApplyCoarse,0,0,0,0);CHKERRQ(ierr); 610 PetscFunctionReturn(0); 611 } 612 613 #undef __FUNCT__ 614 615 616 617 /* ------- E N D O F T H E C O D E ------- */ 618 /* */ 619 /* From now on, "footnotes" (or "historical notes"). */ 620 /* */ 621 /* ------------------------------------------------- */ 622 623 624 625 /* -------------------------------------------------------------------------- 626 Historical note 01 627 -------------------------------------------------------------------------- */ 628 /* 629 We considered the possibility of an alternative D_i that would still 630 provide a partition of unity (i.e., $ \sum_i N_i D_i N_i^T = I $). 631 The basic principle was still the pseudo-inverse of the counting 632 function; the difference was that we would not count subdomains 633 that do not contribute to the coarse space (i.e., not pure-Neumann 634 subdomains). 635 636 This turned out to be a bad idea: we would solve trivial Neumann 637 problems in the not pure-Neumann subdomains, since we would be scaling 638 the balanced residual by zero. 639 */ 640 641 642 643 644 /* -------------------------------------------------------------------------- 645 Historical note 02 646 -------------------------------------------------------------------------- */ 647 /* 648 We tried an alternative coarse problem, that would eliminate exactly a 649 constant error. Turned out not to improve the overall convergence. 650 */ 651 652 653