123ce1328SBarry Smith 2c6db04a5SJed Brown #include <../src/ksp/pc/impls/is/pcis.h> 3b4319ba4SBarry Smith 4b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */ 5b4319ba4SBarry Smith /* 6b4319ba4SBarry Smith PCISSetUp - 7b4319ba4SBarry Smith */ 8b4319ba4SBarry Smith #undef __FUNCT__ 9b4319ba4SBarry Smith #define __FUNCT__ "PCISSetUp" 107087cfbeSBarry Smith PetscErrorCode PCISSetUp(PC pc) 11b4319ba4SBarry Smith { 12b4319ba4SBarry Smith PC_IS *pcis = (PC_IS*)(pc->data); 13b4319ba4SBarry Smith Mat_IS *matis = (Mat_IS*)pc->mat->data; 1413f74950SBarry Smith PetscInt i; 156849ba73SBarry Smith PetscErrorCode ierr; 16ace3abfcSBarry Smith PetscBool flg; 17b4319ba4SBarry Smith 18b4319ba4SBarry Smith PetscFunctionBegin; 19*251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)pc->mat,MATIS,&flg);CHKERRQ(ierr); 20e7e72b3dSBarry Smith if (!flg) SETERRQ(((PetscObject)pc)->comm,PETSC_ERR_ARG_WRONG,"Preconditioner type of Neumann Neumman requires matrix of type MATIS"); 21b4319ba4SBarry Smith 22b4319ba4SBarry Smith pcis->pure_neumann = matis->pure_neumann; 23b4319ba4SBarry Smith 24b4319ba4SBarry Smith /* 25b4319ba4SBarry Smith Creating the local vector vec1_N, containing the inverse of the number 26b4319ba4SBarry Smith of subdomains to which each local node (either owned or ghost) 27b4319ba4SBarry Smith pertains. To accomplish that, we scatter local vectors of 1's to 28b4319ba4SBarry Smith a global vector (adding the values); scatter the result back to 29b4319ba4SBarry Smith local vectors and finally invert the result. 30b4319ba4SBarry Smith */ 31b4319ba4SBarry Smith { 32b4319ba4SBarry Smith Vec counter; 33b4319ba4SBarry Smith ierr = VecDuplicate(matis->x,&pcis->vec1_N);CHKERRQ(ierr); 3423ce1328SBarry Smith ierr = MatGetVecs(pc->pmat,&counter,0);CHKERRQ(ierr); /* temporary auxiliar vector */ 35efb30889SBarry Smith ierr = VecSet(counter,0.0);CHKERRQ(ierr); 36efb30889SBarry Smith ierr = VecSet(pcis->vec1_N,1.0);CHKERRQ(ierr); 37ca9f406cSSatish Balay ierr = VecScatterBegin(matis->ctx,pcis->vec1_N,counter,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 38ca9f406cSSatish Balay ierr = VecScatterEnd (matis->ctx,pcis->vec1_N,counter,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 39ca9f406cSSatish Balay ierr = VecScatterBegin(matis->ctx,counter,pcis->vec1_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 40ca9f406cSSatish Balay ierr = VecScatterEnd (matis->ctx,counter,pcis->vec1_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 416bf464f9SBarry Smith ierr = VecDestroy(&counter);CHKERRQ(ierr); 42b4319ba4SBarry Smith } 43b4319ba4SBarry Smith /* 44b4319ba4SBarry Smith Creating local and global index sets for interior and 45b4319ba4SBarry Smith inteface nodes. Notice that interior nodes have D[i]==1.0. 46b4319ba4SBarry Smith */ 47b4319ba4SBarry Smith { 4813f74950SBarry Smith PetscInt n_I; 4913f74950SBarry Smith PetscInt *idx_I_local,*idx_B_local,*idx_I_global,*idx_B_global; 50b4319ba4SBarry Smith PetscScalar *array; 51b4319ba4SBarry Smith /* Identifying interior and interface nodes, in local numbering */ 52b4319ba4SBarry Smith ierr = VecGetSize(pcis->vec1_N,&pcis->n);CHKERRQ(ierr); 53b4319ba4SBarry Smith ierr = VecGetArray(pcis->vec1_N,&array);CHKERRQ(ierr); 5413f74950SBarry Smith ierr = PetscMalloc(pcis->n*sizeof(PetscInt),&idx_I_local);CHKERRQ(ierr); 5513f74950SBarry Smith ierr = PetscMalloc(pcis->n*sizeof(PetscInt),&idx_B_local);CHKERRQ(ierr); 56b4319ba4SBarry Smith for (i=0, pcis->n_B=0, n_I=0; i<pcis->n; i++) { 57b4319ba4SBarry Smith if (array[i] == 1.0) { idx_I_local[n_I] = i; n_I++; } 58b4319ba4SBarry Smith else { idx_B_local[pcis->n_B] = i; pcis->n_B++; } 59b4319ba4SBarry Smith } 60b4319ba4SBarry Smith /* Getting the global numbering */ 61b4319ba4SBarry Smith idx_B_global = idx_I_local + n_I; /* Just avoiding allocating extra memory, since we have vacant space */ 62b4319ba4SBarry Smith idx_I_global = idx_B_local + pcis->n_B; 63b4319ba4SBarry Smith ierr = ISLocalToGlobalMappingApply(matis->mapping,pcis->n_B,idx_B_local,idx_B_global);CHKERRQ(ierr); 64b4319ba4SBarry Smith ierr = ISLocalToGlobalMappingApply(matis->mapping,n_I, idx_I_local,idx_I_global);CHKERRQ(ierr); 65b4319ba4SBarry Smith /* Creating the index sets. */ 6670b3c8c7SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,pcis->n_B,idx_B_local,PETSC_COPY_VALUES, &pcis->is_B_local);CHKERRQ(ierr); 6770b3c8c7SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,pcis->n_B,idx_B_global,PETSC_COPY_VALUES,&pcis->is_B_global);CHKERRQ(ierr); 6870b3c8c7SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,n_I ,idx_I_local,PETSC_COPY_VALUES, &pcis->is_I_local);CHKERRQ(ierr); 6970b3c8c7SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,n_I ,idx_I_global,PETSC_COPY_VALUES,&pcis->is_I_global);CHKERRQ(ierr); 70b4319ba4SBarry Smith /* Freeing memory and restoring arrays */ 71b4319ba4SBarry Smith ierr = PetscFree(idx_B_local);CHKERRQ(ierr); 72b4319ba4SBarry Smith ierr = PetscFree(idx_I_local);CHKERRQ(ierr); 73b4319ba4SBarry Smith ierr = VecRestoreArray(pcis->vec1_N,&array);CHKERRQ(ierr); 74b4319ba4SBarry Smith } 75b4319ba4SBarry Smith 76b4319ba4SBarry Smith /* 77b4319ba4SBarry Smith Extracting the blocks A_II, A_BI, A_IB and A_BB from A. If the numbering 78b4319ba4SBarry Smith is such that interior nodes come first than the interface ones, we have 79b4319ba4SBarry Smith 80b4319ba4SBarry Smith [ | ] 81b4319ba4SBarry Smith [ A_II | A_IB ] 82b4319ba4SBarry Smith A = [ | ] 83b4319ba4SBarry Smith [-----------+------] 84b4319ba4SBarry Smith [ A_BI | A_BB ] 85b4319ba4SBarry Smith */ 86b4319ba4SBarry Smith 874aa3045dSJed Brown ierr = MatGetSubMatrix(matis->A,pcis->is_I_local,pcis->is_I_local,MAT_INITIAL_MATRIX,&pcis->A_II);CHKERRQ(ierr); 884aa3045dSJed Brown ierr = MatGetSubMatrix(matis->A,pcis->is_I_local,pcis->is_B_local,MAT_INITIAL_MATRIX,&pcis->A_IB);CHKERRQ(ierr); 894aa3045dSJed Brown ierr = MatGetSubMatrix(matis->A,pcis->is_B_local,pcis->is_I_local,MAT_INITIAL_MATRIX,&pcis->A_BI);CHKERRQ(ierr); 904aa3045dSJed Brown ierr = MatGetSubMatrix(matis->A,pcis->is_B_local,pcis->is_B_local,MAT_INITIAL_MATRIX,&pcis->A_BB);CHKERRQ(ierr); 91b4319ba4SBarry Smith 92b4319ba4SBarry Smith /* 93b4319ba4SBarry Smith Creating work vectors and arrays 94b4319ba4SBarry Smith */ 95b4319ba4SBarry Smith /* pcis->vec1_N has already been created */ 96b4319ba4SBarry Smith ierr = VecDuplicate(pcis->vec1_N,&pcis->vec2_N);CHKERRQ(ierr); 97b4319ba4SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,pcis->n-pcis->n_B,&pcis->vec1_D);CHKERRQ(ierr); 98b4319ba4SBarry Smith ierr = VecDuplicate(pcis->vec1_D,&pcis->vec2_D);CHKERRQ(ierr); 99b4319ba4SBarry Smith ierr = VecDuplicate(pcis->vec1_D,&pcis->vec3_D);CHKERRQ(ierr); 100b4319ba4SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,pcis->n_B,&pcis->vec1_B);CHKERRQ(ierr); 101b4319ba4SBarry Smith ierr = VecDuplicate(pcis->vec1_B,&pcis->vec2_B);CHKERRQ(ierr); 102b4319ba4SBarry Smith ierr = VecDuplicate(pcis->vec1_B,&pcis->vec3_B);CHKERRQ(ierr); 10323ce1328SBarry Smith ierr = MatGetVecs(pc->pmat,&pcis->vec1_global,0);CHKERRQ(ierr); 104b4319ba4SBarry Smith ierr = PetscMalloc((pcis->n)*sizeof(PetscScalar),&pcis->work_N);CHKERRQ(ierr); 105b4319ba4SBarry Smith 106b4319ba4SBarry Smith /* Creating the scatter contexts */ 10723ce1328SBarry Smith ierr = VecScatterCreate(pcis->vec1_global,pcis->is_I_global,pcis->vec1_D,(IS)0,&pcis->global_to_D);CHKERRQ(ierr); 108b4319ba4SBarry Smith ierr = VecScatterCreate(pcis->vec1_N,pcis->is_B_local,pcis->vec1_B,(IS)0,&pcis->N_to_B);CHKERRQ(ierr); 10923ce1328SBarry Smith ierr = VecScatterCreate(pcis->vec1_global,pcis->is_B_global,pcis->vec1_B,(IS)0,&pcis->global_to_B);CHKERRQ(ierr); 110b4319ba4SBarry Smith 111b4319ba4SBarry Smith /* Creating scaling "matrix" D, from information in vec1_N */ 112b4319ba4SBarry Smith ierr = VecDuplicate(pcis->vec1_B,&pcis->D);CHKERRQ(ierr); 113ca9f406cSSatish Balay ierr = VecScatterBegin(pcis->N_to_B,pcis->vec1_N,pcis->D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 114ca9f406cSSatish Balay ierr = VecScatterEnd (pcis->N_to_B,pcis->vec1_N,pcis->D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 115b4319ba4SBarry Smith ierr = VecReciprocal(pcis->D);CHKERRQ(ierr); 116b4319ba4SBarry Smith 117b4319ba4SBarry Smith /* See historical note 01, at the bottom of this file. */ 118b4319ba4SBarry Smith 119b4319ba4SBarry Smith /* 120b4319ba4SBarry Smith Creating the KSP contexts for the local Dirichlet and Neumann problems. 121b4319ba4SBarry Smith */ 122b4319ba4SBarry Smith { 123b4319ba4SBarry Smith PC pc_ctx; 124b4319ba4SBarry Smith /* Dirichlet */ 125b4319ba4SBarry Smith ierr = KSPCreate(PETSC_COMM_SELF,&pcis->ksp_D);CHKERRQ(ierr); 1261cee3971SBarry Smith ierr = PetscObjectIncrementTabLevel((PetscObject)pcis->ksp_D,(PetscObject)pc,1);CHKERRQ(ierr); 127b4319ba4SBarry Smith ierr = KSPSetOperators(pcis->ksp_D,pcis->A_II,pcis->A_II,SAME_PRECONDITIONER);CHKERRQ(ierr); 128b4319ba4SBarry Smith ierr = KSPSetOptionsPrefix(pcis->ksp_D,"is_localD_");CHKERRQ(ierr); 129b4319ba4SBarry Smith ierr = KSPGetPC(pcis->ksp_D,&pc_ctx);CHKERRQ(ierr); 130b4319ba4SBarry Smith ierr = PCSetType(pc_ctx,PCLU);CHKERRQ(ierr); 131b4319ba4SBarry Smith ierr = KSPSetType(pcis->ksp_D,KSPPREONLY);CHKERRQ(ierr); 132b4319ba4SBarry Smith ierr = KSPSetFromOptions(pcis->ksp_D);CHKERRQ(ierr); 133b4319ba4SBarry Smith /* the vectors in the following line are dummy arguments, just telling the KSP the vector size. Values are not used */ 134b4319ba4SBarry Smith ierr = KSPSetUp(pcis->ksp_D);CHKERRQ(ierr); 135b4319ba4SBarry Smith /* Neumann */ 136b4319ba4SBarry Smith ierr = KSPCreate(PETSC_COMM_SELF,&pcis->ksp_N);CHKERRQ(ierr); 1371cee3971SBarry Smith ierr = PetscObjectIncrementTabLevel((PetscObject)pcis->ksp_N,(PetscObject)pc,1);CHKERRQ(ierr); 138b4319ba4SBarry Smith ierr = KSPSetOperators(pcis->ksp_N,matis->A,matis->A,SAME_PRECONDITIONER);CHKERRQ(ierr); 139b4319ba4SBarry Smith ierr = KSPSetOptionsPrefix(pcis->ksp_N,"is_localN_");CHKERRQ(ierr); 140b4319ba4SBarry Smith ierr = KSPGetPC(pcis->ksp_N,&pc_ctx);CHKERRQ(ierr); 141b4319ba4SBarry Smith ierr = PCSetType(pc_ctx,PCLU);CHKERRQ(ierr); 142b4319ba4SBarry Smith ierr = KSPSetType(pcis->ksp_N,KSPPREONLY);CHKERRQ(ierr); 143b4319ba4SBarry Smith ierr = KSPSetFromOptions(pcis->ksp_N);CHKERRQ(ierr); 144b4319ba4SBarry Smith { 145ace3abfcSBarry Smith PetscBool damp_fixed = PETSC_FALSE, 14690d69ab7SBarry Smith remove_nullspace_fixed = PETSC_FALSE, 14790d69ab7SBarry Smith set_damping_factor_floating = PETSC_FALSE, 14890d69ab7SBarry Smith not_damp_floating = PETSC_FALSE, 14990d69ab7SBarry Smith not_remove_nullspace_floating = PETSC_FALSE; 150b4319ba4SBarry Smith PetscReal fixed_factor, 151b4319ba4SBarry Smith floating_factor; 152b4319ba4SBarry Smith 1537adad957SLisandro Dalcin ierr = PetscOptionsGetReal(((PetscObject)pc_ctx)->prefix,"-pc_is_damp_fixed",&fixed_factor,&damp_fixed);CHKERRQ(ierr); 154b4319ba4SBarry Smith if (!damp_fixed) { fixed_factor = 0.0; } 155acfcf0e5SJed Brown ierr = PetscOptionsGetBool(((PetscObject)pc_ctx)->prefix,"-pc_is_damp_fixed",&damp_fixed,PETSC_NULL);CHKERRQ(ierr); 156b4319ba4SBarry Smith 157acfcf0e5SJed Brown ierr = PetscOptionsGetBool(((PetscObject)pc_ctx)->prefix,"-pc_is_remove_nullspace_fixed",&remove_nullspace_fixed,PETSC_NULL);CHKERRQ(ierr); 158b4319ba4SBarry Smith 1597adad957SLisandro Dalcin ierr = PetscOptionsGetReal(((PetscObject)pc_ctx)->prefix,"-pc_is_set_damping_factor_floating", 160b4319ba4SBarry Smith &floating_factor,&set_damping_factor_floating);CHKERRQ(ierr); 161b4319ba4SBarry Smith if (!set_damping_factor_floating) { floating_factor = 0.0; } 162acfcf0e5SJed Brown ierr = PetscOptionsGetBool(((PetscObject)pc_ctx)->prefix,"-pc_is_set_damping_factor_floating",&set_damping_factor_floating,PETSC_NULL);CHKERRQ(ierr); 163b4319ba4SBarry Smith if (!set_damping_factor_floating) { floating_factor = 1.e-12; } 164b4319ba4SBarry Smith 165acfcf0e5SJed Brown ierr = PetscOptionsGetBool(((PetscObject)pc_ctx)->prefix,"-pc_is_not_damp_floating",¬_damp_floating,PETSC_NULL);CHKERRQ(ierr); 166b4319ba4SBarry Smith 167acfcf0e5SJed Brown ierr = PetscOptionsGetBool(((PetscObject)pc_ctx)->prefix,"-pc_is_not_remove_nullspace_floating",¬_remove_nullspace_floating,PETSC_NULL);CHKERRQ(ierr); 168b4319ba4SBarry Smith 169b4319ba4SBarry Smith if (pcis->pure_neumann) { /* floating subdomain */ 170b4319ba4SBarry Smith if (!(not_damp_floating)) { 171c88783f4SHong Zhang ierr = PCFactorSetShiftType(pc_ctx,MAT_SHIFT_NONZERO);CHKERRQ(ierr); 172c88783f4SHong Zhang ierr = PCFactorSetShiftAmount(pc_ctx,floating_factor);CHKERRQ(ierr); 173b4319ba4SBarry Smith } 174b4319ba4SBarry Smith if (!(not_remove_nullspace_floating)){ 175b4319ba4SBarry Smith MatNullSpace nullsp; 176ee512c37SSatish Balay ierr = MatNullSpaceCreate(PETSC_COMM_SELF,PETSC_TRUE,0,PETSC_NULL,&nullsp);CHKERRQ(ierr); 177d8fd42c4SBarry Smith ierr = KSPSetNullSpace(pcis->ksp_N,nullsp);CHKERRQ(ierr); 178d34fcf5fSBarry Smith ierr = MatNullSpaceDestroy(&nullsp);CHKERRQ(ierr); 179b4319ba4SBarry Smith } 180b4319ba4SBarry Smith } else { /* fixed subdomain */ 181b4319ba4SBarry Smith if (damp_fixed) { 182c88783f4SHong Zhang ierr = PCFactorSetShiftType(pc_ctx,MAT_SHIFT_NONZERO);CHKERRQ(ierr); 183c88783f4SHong Zhang ierr = PCFactorSetShiftAmount(pc_ctx,floating_factor);CHKERRQ(ierr); 184b4319ba4SBarry Smith } 185b4319ba4SBarry Smith if (remove_nullspace_fixed) { 186b4319ba4SBarry Smith MatNullSpace nullsp; 187ee512c37SSatish Balay ierr = MatNullSpaceCreate(PETSC_COMM_SELF,PETSC_TRUE,0,PETSC_NULL,&nullsp);CHKERRQ(ierr); 188d8fd42c4SBarry Smith ierr = KSPSetNullSpace(pcis->ksp_N,nullsp);CHKERRQ(ierr); 189d34fcf5fSBarry Smith ierr = MatNullSpaceDestroy(&nullsp);CHKERRQ(ierr); 190b4319ba4SBarry Smith } 191b4319ba4SBarry Smith } 192b4319ba4SBarry Smith } 193b4319ba4SBarry Smith /* the vectors in the following line are dummy arguments, just telling the KSP the vector size. Values are not used */ 194b4319ba4SBarry Smith ierr = KSPSetUp(pcis->ksp_N);CHKERRQ(ierr); 195b4319ba4SBarry Smith } 196b4319ba4SBarry Smith 1977c334f02SBarry Smith ierr = ISLocalToGlobalMappingGetInfo(((Mat_IS*)(pc->mat->data))->mapping,&(pcis->n_neigh),&(pcis->neigh),&(pcis->n_shared),&(pcis->shared));CHKERRQ(ierr); 198b4319ba4SBarry Smith pcis->ISLocalToGlobalMappingGetInfoWasCalled = PETSC_TRUE; 199b4319ba4SBarry Smith PetscFunctionReturn(0); 200b4319ba4SBarry Smith } 201b4319ba4SBarry Smith 202b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */ 203b4319ba4SBarry Smith /* 204b4319ba4SBarry Smith PCISDestroy - 205b4319ba4SBarry Smith */ 206b4319ba4SBarry Smith #undef __FUNCT__ 207b4319ba4SBarry Smith #define __FUNCT__ "PCISDestroy" 2087087cfbeSBarry Smith PetscErrorCode PCISDestroy(PC pc) 209b4319ba4SBarry Smith { 210b4319ba4SBarry Smith PC_IS *pcis = (PC_IS*)(pc->data); 211dfbe8321SBarry Smith PetscErrorCode ierr; 212b4319ba4SBarry Smith 213b4319ba4SBarry Smith PetscFunctionBegin; 214fcfd50ebSBarry Smith ierr = ISDestroy(&pcis->is_B_local);CHKERRQ(ierr); 215fcfd50ebSBarry Smith ierr = ISDestroy(&pcis->is_I_local);CHKERRQ(ierr); 216fcfd50ebSBarry Smith ierr = ISDestroy(&pcis->is_B_global);CHKERRQ(ierr); 217fcfd50ebSBarry Smith ierr = ISDestroy(&pcis->is_I_global);CHKERRQ(ierr); 218fcfd50ebSBarry Smith ierr = MatDestroy(&pcis->A_II);CHKERRQ(ierr); 219fcfd50ebSBarry Smith ierr = MatDestroy(&pcis->A_IB);CHKERRQ(ierr); 220fcfd50ebSBarry Smith ierr = MatDestroy(&pcis->A_BI);CHKERRQ(ierr); 221fcfd50ebSBarry Smith ierr = MatDestroy(&pcis->A_BB);CHKERRQ(ierr); 222fcfd50ebSBarry Smith ierr = VecDestroy(&pcis->D);CHKERRQ(ierr); 223fcfd50ebSBarry Smith ierr = KSPDestroy(&pcis->ksp_N);CHKERRQ(ierr); 224fcfd50ebSBarry Smith ierr = KSPDestroy(&pcis->ksp_D);CHKERRQ(ierr); 225fcfd50ebSBarry Smith ierr = VecDestroy(&pcis->vec1_N);CHKERRQ(ierr); 226fcfd50ebSBarry Smith ierr = VecDestroy(&pcis->vec2_N);CHKERRQ(ierr); 227fcfd50ebSBarry Smith ierr = VecDestroy(&pcis->vec1_D);CHKERRQ(ierr); 228fcfd50ebSBarry Smith ierr = VecDestroy(&pcis->vec2_D);CHKERRQ(ierr); 229fcfd50ebSBarry Smith ierr = VecDestroy(&pcis->vec3_D);CHKERRQ(ierr); 230fcfd50ebSBarry Smith ierr = VecDestroy(&pcis->vec1_B);CHKERRQ(ierr); 231fcfd50ebSBarry Smith ierr = VecDestroy(&pcis->vec2_B);CHKERRQ(ierr); 232fcfd50ebSBarry Smith ierr = VecDestroy(&pcis->vec3_B);CHKERRQ(ierr); 233fcfd50ebSBarry Smith ierr = VecDestroy(&pcis->vec1_global);CHKERRQ(ierr); 234fcfd50ebSBarry Smith ierr = VecScatterDestroy(&pcis->global_to_D);CHKERRQ(ierr); 235fcfd50ebSBarry Smith ierr = VecScatterDestroy(&pcis->N_to_B);CHKERRQ(ierr); 236fcfd50ebSBarry Smith ierr = VecScatterDestroy(&pcis->global_to_B);CHKERRQ(ierr); 23705b42c5fSBarry Smith ierr = PetscFree(pcis->work_N);CHKERRQ(ierr); 238b4319ba4SBarry Smith if (pcis->ISLocalToGlobalMappingGetInfoWasCalled) { 239b4319ba4SBarry Smith ierr = ISLocalToGlobalMappingRestoreInfo((ISLocalToGlobalMapping)0,&(pcis->n_neigh),&(pcis->neigh),&(pcis->n_shared),&(pcis->shared));CHKERRQ(ierr); 240b4319ba4SBarry Smith } 241b4319ba4SBarry Smith PetscFunctionReturn(0); 242b4319ba4SBarry Smith } 243b4319ba4SBarry Smith 244b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */ 245b4319ba4SBarry Smith /* 246b4319ba4SBarry Smith PCISCreate - 247b4319ba4SBarry Smith */ 248b4319ba4SBarry Smith #undef __FUNCT__ 249b4319ba4SBarry Smith #define __FUNCT__ "PCISCreate" 2507087cfbeSBarry Smith PetscErrorCode PCISCreate(PC pc) 251b4319ba4SBarry Smith { 252b4319ba4SBarry Smith PC_IS *pcis = (PC_IS*)(pc->data); 253b4319ba4SBarry Smith 254b4319ba4SBarry Smith PetscFunctionBegin; 255b4319ba4SBarry Smith pcis->is_B_local = 0; 256b4319ba4SBarry Smith pcis->is_I_local = 0; 257b4319ba4SBarry Smith pcis->is_B_global = 0; 258b4319ba4SBarry Smith pcis->is_I_global = 0; 259b4319ba4SBarry Smith pcis->A_II = 0; 260b4319ba4SBarry Smith pcis->A_IB = 0; 261b4319ba4SBarry Smith pcis->A_BI = 0; 262b4319ba4SBarry Smith pcis->A_BB = 0; 263b4319ba4SBarry Smith pcis->D = 0; 264b4319ba4SBarry Smith pcis->ksp_N = 0; 265b4319ba4SBarry Smith pcis->ksp_D = 0; 266b4319ba4SBarry Smith pcis->vec1_N = 0; 267b4319ba4SBarry Smith pcis->vec2_N = 0; 268b4319ba4SBarry Smith pcis->vec1_D = 0; 269b4319ba4SBarry Smith pcis->vec2_D = 0; 270b4319ba4SBarry Smith pcis->vec3_D = 0; 271b4319ba4SBarry Smith pcis->vec1_B = 0; 272b4319ba4SBarry Smith pcis->vec2_B = 0; 273b4319ba4SBarry Smith pcis->vec3_B = 0; 274b4319ba4SBarry Smith pcis->vec1_global = 0; 275b4319ba4SBarry Smith pcis->work_N = 0; 276b4319ba4SBarry Smith pcis->global_to_D = 0; 277b4319ba4SBarry Smith pcis->N_to_B = 0; 278b4319ba4SBarry Smith pcis->global_to_B = 0; 279b4319ba4SBarry Smith pcis->ISLocalToGlobalMappingGetInfoWasCalled = PETSC_FALSE; 280b4319ba4SBarry Smith PetscFunctionReturn(0); 281b4319ba4SBarry Smith } 282b4319ba4SBarry Smith 283b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */ 284b4319ba4SBarry Smith /* 285b4319ba4SBarry Smith PCISApplySchur - 286b4319ba4SBarry Smith 287b4319ba4SBarry Smith Input parameters: 288b4319ba4SBarry Smith . pc - preconditioner context 289b4319ba4SBarry Smith . v - vector to which the Schur complement is to be applied (it is NOT modified inside this function, UNLESS vec2_B is null) 290b4319ba4SBarry Smith 291b4319ba4SBarry Smith Output parameters: 292b4319ba4SBarry Smith . vec1_B - result of Schur complement applied to chunk 293b4319ba4SBarry Smith . vec2_B - garbage (used as work space), or null (and v is used as workspace) 294b4319ba4SBarry Smith . vec1_D - garbage (used as work space) 295b4319ba4SBarry Smith . vec2_D - garbage (used as work space) 296b4319ba4SBarry Smith 297b4319ba4SBarry Smith */ 298b4319ba4SBarry Smith #undef __FUNCT__ 299b4319ba4SBarry Smith #define __FUNCT__ "PCIterSuApplySchur" 3007087cfbeSBarry Smith PetscErrorCode PCISApplySchur(PC pc, Vec v, Vec vec1_B, Vec vec2_B, Vec vec1_D, Vec vec2_D) 301b4319ba4SBarry Smith { 302dfbe8321SBarry Smith PetscErrorCode ierr; 303b4319ba4SBarry Smith PC_IS *pcis = (PC_IS*)(pc->data); 304b4319ba4SBarry Smith 305b4319ba4SBarry Smith PetscFunctionBegin; 30613f74950SBarry Smith if (!vec2_B) { vec2_B = v; } 307b4319ba4SBarry Smith 308b4319ba4SBarry Smith ierr = MatMult(pcis->A_BB,v,vec1_B);CHKERRQ(ierr); 309b4319ba4SBarry Smith ierr = MatMult(pcis->A_IB,v,vec1_D);CHKERRQ(ierr); 31023ce1328SBarry Smith ierr = KSPSolve(pcis->ksp_D,vec1_D,vec2_D);CHKERRQ(ierr); 311b4319ba4SBarry Smith ierr = MatMult(pcis->A_BI,vec2_D,vec2_B);CHKERRQ(ierr); 312efb30889SBarry Smith ierr = VecAXPY(vec1_B,-1.0,vec2_B);CHKERRQ(ierr); 313b4319ba4SBarry Smith PetscFunctionReturn(0); 314b4319ba4SBarry Smith } 315b4319ba4SBarry Smith 316b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */ 317b4319ba4SBarry Smith /* 318b4319ba4SBarry Smith PCISScatterArrayNToVecB - Scatters interface node values from a big array (of all local nodes, interior or interface, 319b4319ba4SBarry Smith including ghosts) into an interface vector, when in SCATTER_FORWARD mode, or vice-versa, when in SCATTER_REVERSE 320b4319ba4SBarry Smith mode. 321b4319ba4SBarry Smith 322b4319ba4SBarry Smith Input parameters: 323b4319ba4SBarry Smith . pc - preconditioner context 324b4319ba4SBarry Smith . array_N - [when in SCATTER_FORWARD mode] Array to be scattered into the vector 325b4319ba4SBarry Smith . v_B - [when in SCATTER_REVERSE mode] Vector to be scattered into the array 326b4319ba4SBarry Smith 327b4319ba4SBarry Smith Output parameter: 328b4319ba4SBarry Smith . array_N - [when in SCATTER_REVERSE mode] Array to receive the scattered vector 329b4319ba4SBarry Smith . v_B - [when in SCATTER_FORWARD mode] Vector to receive the scattered array 330b4319ba4SBarry Smith 331b4319ba4SBarry Smith Notes: 332b4319ba4SBarry Smith The entries in the array that do not correspond to interface nodes remain unaltered. 333b4319ba4SBarry Smith */ 334b4319ba4SBarry Smith #undef __FUNCT__ 335b4319ba4SBarry Smith #define __FUNCT__ "PCISScatterArrayNToVecB" 3367087cfbeSBarry Smith PetscErrorCode PCISScatterArrayNToVecB (PetscScalar *array_N, Vec v_B, InsertMode imode, ScatterMode smode, PC pc) 337b4319ba4SBarry Smith { 3385d0c19d7SBarry Smith PetscInt i; 3395d0c19d7SBarry Smith const PetscInt *idex; 3406849ba73SBarry Smith PetscErrorCode ierr; 341b4319ba4SBarry Smith PetscScalar *array_B; 342b4319ba4SBarry Smith PC_IS *pcis = (PC_IS*)(pc->data); 343b4319ba4SBarry Smith 344b4319ba4SBarry Smith PetscFunctionBegin; 345b4319ba4SBarry Smith ierr = VecGetArray(v_B,&array_B);CHKERRQ(ierr); 346b4319ba4SBarry Smith ierr = ISGetIndices(pcis->is_B_local,&idex);CHKERRQ(ierr); 347b4319ba4SBarry Smith 348b4319ba4SBarry Smith if (smode == SCATTER_FORWARD) { 349b4319ba4SBarry Smith if (imode == INSERT_VALUES) { 350b4319ba4SBarry Smith for (i=0; i<pcis->n_B; i++) { array_B[i] = array_N[idex[i]]; } 351b4319ba4SBarry Smith } else { /* ADD_VALUES */ 352b4319ba4SBarry Smith for (i=0; i<pcis->n_B; i++) { array_B[i] += array_N[idex[i]]; } 353b4319ba4SBarry Smith } 354b4319ba4SBarry Smith } else { /* SCATTER_REVERSE */ 355b4319ba4SBarry Smith if (imode == INSERT_VALUES) { 356b4319ba4SBarry Smith for (i=0; i<pcis->n_B; i++) { array_N[idex[i]] = array_B[i]; } 357b4319ba4SBarry Smith } else { /* ADD_VALUES */ 358b4319ba4SBarry Smith for (i=0; i<pcis->n_B; i++) { array_N[idex[i]] += array_B[i]; } 359b4319ba4SBarry Smith } 360b4319ba4SBarry Smith } 361b4319ba4SBarry Smith ierr = ISRestoreIndices(pcis->is_B_local,&idex);CHKERRQ(ierr); 362b4319ba4SBarry Smith ierr = VecRestoreArray(v_B,&array_B);CHKERRQ(ierr); 363b4319ba4SBarry Smith PetscFunctionReturn(0); 364b4319ba4SBarry Smith } 365b4319ba4SBarry Smith 366b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */ 367b4319ba4SBarry Smith /* 368b4319ba4SBarry Smith PCISApplyInvSchur - Solves the Neumann problem related to applying the inverse of the Schur complement. 369b4319ba4SBarry Smith More precisely, solves the problem: 370b4319ba4SBarry Smith [ A_II A_IB ] [ . ] [ 0 ] 371b4319ba4SBarry Smith [ ] [ ] = [ ] 372b4319ba4SBarry Smith [ A_BI A_BB ] [ x ] [ b ] 373b4319ba4SBarry Smith 374b4319ba4SBarry Smith Input parameters: 375b4319ba4SBarry Smith . pc - preconditioner context 376b4319ba4SBarry Smith . b - vector of local interface nodes (including ghosts) 377b4319ba4SBarry Smith 378b4319ba4SBarry Smith Output parameters: 379b4319ba4SBarry Smith . x - vector of local interface nodes (including ghosts); returns the application of the inverse of the Schur 380b4319ba4SBarry Smith complement to b 381b4319ba4SBarry Smith . vec1_N - vector of local nodes (interior and interface, including ghosts); returns garbage (used as work space) 382b4319ba4SBarry Smith . vec2_N - vector of local nodes (interior and interface, including ghosts); returns garbage (used as work space) 383b4319ba4SBarry Smith 384b4319ba4SBarry Smith */ 385b4319ba4SBarry Smith #undef __FUNCT__ 386b4319ba4SBarry Smith #define __FUNCT__ "PCISApplyInvSchur" 3877087cfbeSBarry Smith PetscErrorCode PCISApplyInvSchur (PC pc, Vec b, Vec x, Vec vec1_N, Vec vec2_N) 388b4319ba4SBarry Smith { 389dfbe8321SBarry Smith PetscErrorCode ierr; 390b4319ba4SBarry Smith PC_IS *pcis = (PC_IS*)(pc->data); 391b4319ba4SBarry Smith 392b4319ba4SBarry Smith PetscFunctionBegin; 393b4319ba4SBarry Smith /* 394b4319ba4SBarry Smith Neumann solvers. 395b4319ba4SBarry Smith Applying the inverse of the local Schur complement, i.e, solving a Neumann 396b4319ba4SBarry Smith Problem with zero at the interior nodes of the RHS and extracting the interface 397b4319ba4SBarry Smith part of the solution. inverse Schur complement is applied to b and the result 398b4319ba4SBarry Smith is stored in x. 399b4319ba4SBarry Smith */ 400b4319ba4SBarry Smith /* Setting the RHS vec1_N */ 401efb30889SBarry Smith ierr = VecSet(vec1_N,0.0);CHKERRQ(ierr); 402ca9f406cSSatish Balay ierr = VecScatterBegin(pcis->N_to_B,b,vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 403ca9f406cSSatish Balay ierr = VecScatterEnd (pcis->N_to_B,b,vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 404b4319ba4SBarry Smith /* Checking for consistency of the RHS */ 405b4319ba4SBarry Smith { 406ace3abfcSBarry Smith PetscBool flg = PETSC_FALSE; 407acfcf0e5SJed Brown ierr = PetscOptionsGetBool(PETSC_NULL,"-pc_is_check_consistency",&flg,PETSC_NULL);CHKERRQ(ierr); 408b4319ba4SBarry Smith if (flg) { 409b4319ba4SBarry Smith PetscScalar average; 4103050cee2SBarry Smith PetscViewer viewer; 4117adad957SLisandro Dalcin ierr = PetscViewerASCIIGetStdout(((PetscObject)pc)->comm,&viewer);CHKERRQ(ierr); 4123050cee2SBarry Smith 413b4319ba4SBarry Smith ierr = VecSum(vec1_N,&average);CHKERRQ(ierr); 414b4319ba4SBarry Smith average = average / ((PetscReal)pcis->n); 4157b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 416b4319ba4SBarry Smith if (pcis->pure_neumann) { 4179f73f8ecSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"Subdomain %04d is floating. Average = % 1.14e\n",PetscGlobalRank,PetscAbsScalar(average));CHKERRQ(ierr); 418b4319ba4SBarry Smith } else { 4199f73f8ecSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"Subdomain %04d is fixed. Average = % 1.14e\n",PetscGlobalRank,PetscAbsScalar(average));CHKERRQ(ierr); 420b4319ba4SBarry Smith } 4213050cee2SBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 4227b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 423b4319ba4SBarry Smith } 424b4319ba4SBarry Smith } 425b4319ba4SBarry Smith /* Solving the system for vec2_N */ 42623ce1328SBarry Smith ierr = KSPSolve(pcis->ksp_N,vec1_N,vec2_N);CHKERRQ(ierr); 427b4319ba4SBarry Smith /* Extracting the local interface vector out of the solution */ 428ca9f406cSSatish Balay ierr = VecScatterBegin(pcis->N_to_B,vec2_N,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 429ca9f406cSSatish Balay ierr = VecScatterEnd (pcis->N_to_B,vec2_N,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 430b4319ba4SBarry Smith PetscFunctionReturn(0); 431b4319ba4SBarry Smith } 432b4319ba4SBarry Smith 433b4319ba4SBarry Smith 434b4319ba4SBarry Smith 435b4319ba4SBarry Smith 436b4319ba4SBarry Smith 437b4319ba4SBarry Smith 438b4319ba4SBarry Smith 439b4319ba4SBarry Smith 440b4319ba4SBarry Smith 441