xref: /petsc/src/ksp/pc/impls/is/pcis.c (revision 5d0c19d75c660d4fec594a5399ec8d8ba29c54a8)
1dba47a55SKris Buschelman #define PETSCKSP_DLL
223ce1328SBarry Smith 
3b4319ba4SBarry Smith #include "src/ksp/pc/impls/is/pcis.h"
4b4319ba4SBarry Smith 
5b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */
6b4319ba4SBarry Smith /*
7b4319ba4SBarry Smith    PCISSetUp -
8b4319ba4SBarry Smith */
9b4319ba4SBarry Smith #undef __FUNCT__
10b4319ba4SBarry Smith #define __FUNCT__ "PCISSetUp"
11dba47a55SKris Buschelman PetscErrorCode PETSCKSP_DLLEXPORT PCISSetUp(PC pc)
12b4319ba4SBarry Smith {
13b4319ba4SBarry Smith   PC_IS           *pcis = (PC_IS*)(pc->data);
14b4319ba4SBarry Smith   Mat_IS          *matis = (Mat_IS*)pc->mat->data;
1513f74950SBarry Smith   PetscInt        i;
166849ba73SBarry Smith   PetscErrorCode  ierr;
17b4319ba4SBarry Smith   PetscTruth      flg;
18b4319ba4SBarry Smith 
19b4319ba4SBarry Smith   PetscFunctionBegin;
20b4319ba4SBarry Smith   ierr = PetscTypeCompare((PetscObject)pc->mat,MATIS,&flg);CHKERRQ(ierr);
21b4319ba4SBarry Smith   if (!flg){
221302d50aSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Preconditioner type of Neumann Neumman requires matrix of type MATIS");
23b4319ba4SBarry Smith   }
24b4319ba4SBarry Smith 
25b4319ba4SBarry Smith   pcis->pure_neumann = matis->pure_neumann;
26b4319ba4SBarry Smith 
27b4319ba4SBarry Smith   /*
28b4319ba4SBarry Smith     Creating the local vector vec1_N, containing the inverse of the number
29b4319ba4SBarry Smith     of subdomains to which each local node (either owned or ghost)
30b4319ba4SBarry Smith     pertains. To accomplish that, we scatter local vectors of 1's to
31b4319ba4SBarry Smith     a global vector (adding the values); scatter the result back to
32b4319ba4SBarry Smith     local vectors and finally invert the result.
33b4319ba4SBarry Smith   */
34b4319ba4SBarry Smith   {
35b4319ba4SBarry Smith     Vec    counter;
36b4319ba4SBarry Smith     ierr = VecDuplicate(matis->x,&pcis->vec1_N);CHKERRQ(ierr);
3723ce1328SBarry Smith     ierr = MatGetVecs(pc->pmat,&counter,0);CHKERRQ(ierr); /* temporary auxiliar vector */
38efb30889SBarry Smith     ierr = VecSet(counter,0.0);CHKERRQ(ierr);
39efb30889SBarry Smith     ierr = VecSet(pcis->vec1_N,1.0);CHKERRQ(ierr);
40ca9f406cSSatish Balay     ierr = VecScatterBegin(matis->ctx,pcis->vec1_N,counter,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
41ca9f406cSSatish Balay     ierr = VecScatterEnd  (matis->ctx,pcis->vec1_N,counter,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
42ca9f406cSSatish Balay     ierr = VecScatterBegin(matis->ctx,counter,pcis->vec1_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
43ca9f406cSSatish Balay     ierr = VecScatterEnd  (matis->ctx,counter,pcis->vec1_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
44b4319ba4SBarry Smith     ierr = VecDestroy(counter);CHKERRQ(ierr);
45b4319ba4SBarry Smith   }
46b4319ba4SBarry Smith   /*
47b4319ba4SBarry Smith     Creating local and global index sets for interior and
48b4319ba4SBarry Smith     inteface nodes. Notice that interior nodes have D[i]==1.0.
49b4319ba4SBarry Smith   */
50b4319ba4SBarry Smith   {
5113f74950SBarry Smith     PetscInt     n_I;
5213f74950SBarry Smith     PetscInt    *idx_I_local,*idx_B_local,*idx_I_global,*idx_B_global;
53b4319ba4SBarry Smith     PetscScalar *array;
54b4319ba4SBarry Smith     /* Identifying interior and interface nodes, in local numbering */
55b4319ba4SBarry Smith     ierr = VecGetSize(pcis->vec1_N,&pcis->n);CHKERRQ(ierr);
56b4319ba4SBarry Smith     ierr = VecGetArray(pcis->vec1_N,&array);CHKERRQ(ierr);
5713f74950SBarry Smith     ierr = PetscMalloc(pcis->n*sizeof(PetscInt),&idx_I_local);CHKERRQ(ierr);
5813f74950SBarry Smith     ierr = PetscMalloc(pcis->n*sizeof(PetscInt),&idx_B_local);CHKERRQ(ierr);
59b4319ba4SBarry Smith     for (i=0, pcis->n_B=0, n_I=0; i<pcis->n; i++) {
60b4319ba4SBarry Smith       if (array[i] == 1.0) { idx_I_local[n_I]       = i; n_I++;       }
61b4319ba4SBarry Smith       else                 { idx_B_local[pcis->n_B] = i; pcis->n_B++; }
62b4319ba4SBarry Smith     }
63b4319ba4SBarry Smith     /* Getting the global numbering */
64b4319ba4SBarry Smith     idx_B_global = idx_I_local + n_I; /* Just avoiding allocating extra memory, since we have vacant space */
65b4319ba4SBarry Smith     idx_I_global = idx_B_local + pcis->n_B;
66b4319ba4SBarry Smith     ierr = ISLocalToGlobalMappingApply(matis->mapping,pcis->n_B,idx_B_local,idx_B_global);CHKERRQ(ierr);
67b4319ba4SBarry Smith     ierr = ISLocalToGlobalMappingApply(matis->mapping,n_I,      idx_I_local,idx_I_global);CHKERRQ(ierr);
68b4319ba4SBarry Smith     /* Creating the index sets. */
69b4319ba4SBarry Smith     ierr = ISCreateGeneral(MPI_COMM_SELF,pcis->n_B,idx_B_local, &pcis->is_B_local);CHKERRQ(ierr);
70b4319ba4SBarry Smith     ierr = ISCreateGeneral(MPI_COMM_SELF,pcis->n_B,idx_B_global,&pcis->is_B_global);CHKERRQ(ierr);
71b4319ba4SBarry Smith     ierr = ISCreateGeneral(MPI_COMM_SELF,n_I      ,idx_I_local, &pcis->is_I_local);CHKERRQ(ierr);
72b4319ba4SBarry Smith     ierr = ISCreateGeneral(MPI_COMM_SELF,n_I      ,idx_I_global,&pcis->is_I_global);CHKERRQ(ierr);
73b4319ba4SBarry Smith     /* Freeing memory and restoring arrays */
74b4319ba4SBarry Smith     ierr = PetscFree(idx_B_local);CHKERRQ(ierr);
75b4319ba4SBarry Smith     ierr = PetscFree(idx_I_local);CHKERRQ(ierr);
76b4319ba4SBarry Smith     ierr = VecRestoreArray(pcis->vec1_N,&array);CHKERRQ(ierr);
77b4319ba4SBarry Smith   }
78b4319ba4SBarry Smith 
79b4319ba4SBarry Smith   /*
80b4319ba4SBarry Smith     Extracting the blocks A_II, A_BI, A_IB and A_BB from A. If the numbering
81b4319ba4SBarry Smith     is such that interior nodes come first than the interface ones, we have
82b4319ba4SBarry Smith 
83b4319ba4SBarry Smith     [           |      ]
84b4319ba4SBarry Smith     [    A_II   | A_IB ]
85b4319ba4SBarry Smith     A = [           |      ]
86b4319ba4SBarry Smith     [-----------+------]
87b4319ba4SBarry Smith     [    A_BI   | A_BB ]
88b4319ba4SBarry Smith   */
89b4319ba4SBarry Smith 
90b4319ba4SBarry Smith   ierr = MatGetSubMatrix(matis->A,pcis->is_I_local,pcis->is_I_local,PETSC_DECIDE,MAT_INITIAL_MATRIX,&pcis->A_II);CHKERRQ(ierr);
91b4319ba4SBarry Smith   ierr = MatGetSubMatrix(matis->A,pcis->is_I_local,pcis->is_B_local,PETSC_DECIDE,MAT_INITIAL_MATRIX,&pcis->A_IB);CHKERRQ(ierr);
92b4319ba4SBarry Smith   ierr = MatGetSubMatrix(matis->A,pcis->is_B_local,pcis->is_I_local,PETSC_DECIDE,MAT_INITIAL_MATRIX,&pcis->A_BI);CHKERRQ(ierr);
93b4319ba4SBarry Smith   ierr = MatGetSubMatrix(matis->A,pcis->is_B_local,pcis->is_B_local,PETSC_DECIDE,MAT_INITIAL_MATRIX,&pcis->A_BB);CHKERRQ(ierr);
94b4319ba4SBarry Smith 
95b4319ba4SBarry Smith   /*
96b4319ba4SBarry Smith     Creating work vectors and arrays
97b4319ba4SBarry Smith   */
98b4319ba4SBarry Smith   /* pcis->vec1_N has already been created */
99b4319ba4SBarry Smith   ierr = VecDuplicate(pcis->vec1_N,&pcis->vec2_N);CHKERRQ(ierr);
100b4319ba4SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,pcis->n-pcis->n_B,&pcis->vec1_D);CHKERRQ(ierr);
101b4319ba4SBarry Smith   ierr = VecDuplicate(pcis->vec1_D,&pcis->vec2_D);CHKERRQ(ierr);
102b4319ba4SBarry Smith   ierr = VecDuplicate(pcis->vec1_D,&pcis->vec3_D);CHKERRQ(ierr);
103b4319ba4SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,pcis->n_B,&pcis->vec1_B);CHKERRQ(ierr);
104b4319ba4SBarry Smith   ierr = VecDuplicate(pcis->vec1_B,&pcis->vec2_B);CHKERRQ(ierr);
105b4319ba4SBarry Smith   ierr = VecDuplicate(pcis->vec1_B,&pcis->vec3_B);CHKERRQ(ierr);
10623ce1328SBarry Smith   ierr = MatGetVecs(pc->pmat,&pcis->vec1_global,0);CHKERRQ(ierr);
107b4319ba4SBarry Smith   ierr = PetscMalloc((pcis->n)*sizeof(PetscScalar),&pcis->work_N);CHKERRQ(ierr);
108b4319ba4SBarry Smith 
109b4319ba4SBarry Smith   /* Creating the scatter contexts */
11023ce1328SBarry Smith   ierr = VecScatterCreate(pcis->vec1_global,pcis->is_I_global,pcis->vec1_D,(IS)0,&pcis->global_to_D);CHKERRQ(ierr);
111b4319ba4SBarry Smith   ierr = VecScatterCreate(pcis->vec1_N,pcis->is_B_local,pcis->vec1_B,(IS)0,&pcis->N_to_B);CHKERRQ(ierr);
11223ce1328SBarry Smith   ierr = VecScatterCreate(pcis->vec1_global,pcis->is_B_global,pcis->vec1_B,(IS)0,&pcis->global_to_B);CHKERRQ(ierr);
113b4319ba4SBarry Smith 
114b4319ba4SBarry Smith   /* Creating scaling "matrix" D, from information in vec1_N */
115b4319ba4SBarry Smith   ierr = VecDuplicate(pcis->vec1_B,&pcis->D);CHKERRQ(ierr);
116ca9f406cSSatish Balay   ierr = VecScatterBegin(pcis->N_to_B,pcis->vec1_N,pcis->D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
117ca9f406cSSatish Balay   ierr = VecScatterEnd  (pcis->N_to_B,pcis->vec1_N,pcis->D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
118b4319ba4SBarry Smith   ierr = VecReciprocal(pcis->D);CHKERRQ(ierr);
119b4319ba4SBarry Smith 
120b4319ba4SBarry Smith   /* See historical note 01, at the bottom of this file. */
121b4319ba4SBarry Smith 
122b4319ba4SBarry Smith   /*
123b4319ba4SBarry Smith     Creating the KSP contexts for the local Dirichlet and Neumann problems.
124b4319ba4SBarry Smith   */
125b4319ba4SBarry Smith   {
126b4319ba4SBarry Smith     PC  pc_ctx;
127b4319ba4SBarry Smith     /* Dirichlet */
128b4319ba4SBarry Smith     ierr = KSPCreate(PETSC_COMM_SELF,&pcis->ksp_D);CHKERRQ(ierr);
1291cee3971SBarry Smith     ierr = PetscObjectIncrementTabLevel((PetscObject)pcis->ksp_D,(PetscObject)pc,1);CHKERRQ(ierr);
130b4319ba4SBarry Smith     ierr = KSPSetOperators(pcis->ksp_D,pcis->A_II,pcis->A_II,SAME_PRECONDITIONER);CHKERRQ(ierr);
131b4319ba4SBarry Smith     ierr = KSPSetOptionsPrefix(pcis->ksp_D,"is_localD_");CHKERRQ(ierr);
132b4319ba4SBarry Smith     ierr = KSPGetPC(pcis->ksp_D,&pc_ctx);CHKERRQ(ierr);
133b4319ba4SBarry Smith     ierr = PCSetType(pc_ctx,PCLU);CHKERRQ(ierr);
134b4319ba4SBarry Smith     ierr = KSPSetType(pcis->ksp_D,KSPPREONLY);CHKERRQ(ierr);
135b4319ba4SBarry Smith     ierr = KSPSetFromOptions(pcis->ksp_D);CHKERRQ(ierr);
136b4319ba4SBarry Smith     /* the vectors in the following line are dummy arguments, just telling the KSP the vector size. Values are not used */
137b4319ba4SBarry Smith     ierr = KSPSetUp(pcis->ksp_D);CHKERRQ(ierr);
138b4319ba4SBarry Smith     /* Neumann */
139b4319ba4SBarry Smith     ierr = KSPCreate(PETSC_COMM_SELF,&pcis->ksp_N);CHKERRQ(ierr);
1401cee3971SBarry Smith     ierr = PetscObjectIncrementTabLevel((PetscObject)pcis->ksp_N,(PetscObject)pc,1);CHKERRQ(ierr);
141b4319ba4SBarry Smith     ierr = KSPSetOperators(pcis->ksp_N,matis->A,matis->A,SAME_PRECONDITIONER);CHKERRQ(ierr);
142b4319ba4SBarry Smith     ierr = KSPSetOptionsPrefix(pcis->ksp_N,"is_localN_");CHKERRQ(ierr);
143b4319ba4SBarry Smith     ierr = KSPGetPC(pcis->ksp_N,&pc_ctx);CHKERRQ(ierr);
144b4319ba4SBarry Smith     ierr = PCSetType(pc_ctx,PCLU);CHKERRQ(ierr);
145b4319ba4SBarry Smith     ierr = KSPSetType(pcis->ksp_N,KSPPREONLY);CHKERRQ(ierr);
146b4319ba4SBarry Smith     ierr = KSPSetFromOptions(pcis->ksp_N);CHKERRQ(ierr);
147b4319ba4SBarry Smith     {
148b4319ba4SBarry Smith       PetscTruth damp_fixed,
149b4319ba4SBarry Smith                  remove_nullspace_fixed,
150b4319ba4SBarry Smith                  set_damping_factor_floating,
151b4319ba4SBarry Smith                  not_damp_floating,
152b4319ba4SBarry Smith                  not_remove_nullspace_floating;
153b4319ba4SBarry Smith       PetscReal  fixed_factor,
154b4319ba4SBarry Smith                  floating_factor;
155b4319ba4SBarry Smith 
1567adad957SLisandro Dalcin       ierr = PetscOptionsGetReal(((PetscObject)pc_ctx)->prefix,"-pc_is_damp_fixed",&fixed_factor,&damp_fixed);CHKERRQ(ierr);
157b4319ba4SBarry Smith       if (!damp_fixed) { fixed_factor = 0.0; }
1587adad957SLisandro Dalcin       ierr = PetscOptionsHasName(((PetscObject)pc_ctx)->prefix,"-pc_is_damp_fixed",&damp_fixed);CHKERRQ(ierr);
159b4319ba4SBarry Smith 
1607adad957SLisandro Dalcin       ierr = PetscOptionsHasName(((PetscObject)pc_ctx)->prefix,"-pc_is_remove_nullspace_fixed",&remove_nullspace_fixed);CHKERRQ(ierr);
161b4319ba4SBarry Smith 
1627adad957SLisandro Dalcin       ierr = PetscOptionsGetReal(((PetscObject)pc_ctx)->prefix,"-pc_is_set_damping_factor_floating",
163b4319ba4SBarry Smith 			      &floating_factor,&set_damping_factor_floating);CHKERRQ(ierr);
164b4319ba4SBarry Smith       if (!set_damping_factor_floating) { floating_factor = 0.0; }
1657adad957SLisandro Dalcin       ierr = PetscOptionsHasName(((PetscObject)pc_ctx)->prefix,"-pc_is_set_damping_factor_floating",&set_damping_factor_floating);CHKERRQ(ierr);
166b4319ba4SBarry Smith       if (!set_damping_factor_floating) { floating_factor = 1.e-12; }
167b4319ba4SBarry Smith 
1687adad957SLisandro Dalcin       ierr = PetscOptionsHasName(((PetscObject)pc_ctx)->prefix,"-pc_is_not_damp_floating",&not_damp_floating);CHKERRQ(ierr);
169b4319ba4SBarry Smith 
1707adad957SLisandro Dalcin       ierr = PetscOptionsHasName(((PetscObject)pc_ctx)->prefix,"-pc_is_not_remove_nullspace_floating",&not_remove_nullspace_floating);CHKERRQ(ierr);
171b4319ba4SBarry Smith 
172b4319ba4SBarry Smith       if (pcis->pure_neumann) {  /* floating subdomain */
173b4319ba4SBarry Smith 	if (!(not_damp_floating)) {
174afaefe49SHong Zhang           ierr = PCFactorSetShiftNonzero(pc_ctx,floating_factor);CHKERRQ(ierr);
175b4319ba4SBarry Smith 	}
176b4319ba4SBarry Smith 	if (!(not_remove_nullspace_floating)){
177b4319ba4SBarry Smith 	  MatNullSpace nullsp;
178ee512c37SSatish Balay 	  ierr = MatNullSpaceCreate(PETSC_COMM_SELF,PETSC_TRUE,0,PETSC_NULL,&nullsp);CHKERRQ(ierr);
179d8fd42c4SBarry Smith 	  ierr = KSPSetNullSpace(pcis->ksp_N,nullsp);CHKERRQ(ierr);
180b4319ba4SBarry Smith 	  ierr = MatNullSpaceDestroy(nullsp);CHKERRQ(ierr);
181b4319ba4SBarry Smith 	}
182b4319ba4SBarry Smith       } else {  /* fixed subdomain */
183b4319ba4SBarry Smith 	if (damp_fixed) {
184afaefe49SHong Zhang           ierr = PCFactorSetShiftNonzero(pc_ctx,fixed_factor);CHKERRQ(ierr);
185b4319ba4SBarry Smith 	}
186b4319ba4SBarry Smith 	if (remove_nullspace_fixed) {
187b4319ba4SBarry Smith 	  MatNullSpace nullsp;
188ee512c37SSatish Balay 	  ierr = MatNullSpaceCreate(PETSC_COMM_SELF,PETSC_TRUE,0,PETSC_NULL,&nullsp);CHKERRQ(ierr);
189d8fd42c4SBarry Smith 	  ierr = KSPSetNullSpace(pcis->ksp_N,nullsp);CHKERRQ(ierr);
190b4319ba4SBarry Smith 	  ierr = MatNullSpaceDestroy(nullsp);CHKERRQ(ierr);
191b4319ba4SBarry Smith 	}
192b4319ba4SBarry Smith       }
193b4319ba4SBarry Smith     }
194b4319ba4SBarry Smith     /* the vectors in the following line are dummy arguments, just telling the KSP the vector size. Values are not used */
195b4319ba4SBarry Smith     ierr = KSPSetUp(pcis->ksp_N);CHKERRQ(ierr);
196b4319ba4SBarry Smith   }
197b4319ba4SBarry Smith 
1987c334f02SBarry Smith   ierr = ISLocalToGlobalMappingGetInfo(((Mat_IS*)(pc->mat->data))->mapping,&(pcis->n_neigh),&(pcis->neigh),&(pcis->n_shared),&(pcis->shared));CHKERRQ(ierr);
199b4319ba4SBarry Smith   pcis->ISLocalToGlobalMappingGetInfoWasCalled = PETSC_TRUE;
200b4319ba4SBarry Smith   PetscFunctionReturn(0);
201b4319ba4SBarry Smith }
202b4319ba4SBarry Smith 
203b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */
204b4319ba4SBarry Smith /*
205b4319ba4SBarry Smith    PCISDestroy -
206b4319ba4SBarry Smith */
207b4319ba4SBarry Smith #undef __FUNCT__
208b4319ba4SBarry Smith #define __FUNCT__ "PCISDestroy"
209dba47a55SKris Buschelman PetscErrorCode PETSCKSP_DLLEXPORT PCISDestroy(PC pc)
210b4319ba4SBarry Smith {
211b4319ba4SBarry Smith   PC_IS          *pcis = (PC_IS*)(pc->data);
212dfbe8321SBarry Smith   PetscErrorCode ierr;
213b4319ba4SBarry Smith 
214b4319ba4SBarry Smith   PetscFunctionBegin;
215b4319ba4SBarry Smith   if (pcis->is_B_local)  {ierr = ISDestroy(pcis->is_B_local);CHKERRQ(ierr);}
216b4319ba4SBarry Smith   if (pcis->is_I_local)  {ierr = ISDestroy(pcis->is_I_local);CHKERRQ(ierr);}
217b4319ba4SBarry Smith   if (pcis->is_B_global) {ierr = ISDestroy(pcis->is_B_global);CHKERRQ(ierr);}
218b4319ba4SBarry Smith   if (pcis->is_I_global) {ierr = ISDestroy(pcis->is_I_global);CHKERRQ(ierr);}
219b4319ba4SBarry Smith   if (pcis->A_II)        {ierr = MatDestroy(pcis->A_II);CHKERRQ(ierr);}
220b4319ba4SBarry Smith   if (pcis->A_IB)        {ierr = MatDestroy(pcis->A_IB);CHKERRQ(ierr);}
221b4319ba4SBarry Smith   if (pcis->A_BI)        {ierr = MatDestroy(pcis->A_BI);CHKERRQ(ierr);}
222b4319ba4SBarry Smith   if (pcis->A_BB)        {ierr = MatDestroy(pcis->A_BB);CHKERRQ(ierr);}
223b4319ba4SBarry Smith   if (pcis->D)           {ierr = VecDestroy(pcis->D);CHKERRQ(ierr);}
224b4319ba4SBarry Smith   if (pcis->ksp_N)      {ierr = KSPDestroy(pcis->ksp_N);CHKERRQ(ierr);}
225b4319ba4SBarry Smith   if (pcis->ksp_D)      {ierr = KSPDestroy(pcis->ksp_D);CHKERRQ(ierr);}
226b4319ba4SBarry Smith   if (pcis->vec1_N)      {ierr = VecDestroy(pcis->vec1_N);CHKERRQ(ierr);}
227b4319ba4SBarry Smith   if (pcis->vec2_N)      {ierr = VecDestroy(pcis->vec2_N);CHKERRQ(ierr);}
228b4319ba4SBarry Smith   if (pcis->vec1_D)      {ierr = VecDestroy(pcis->vec1_D);CHKERRQ(ierr);}
229b4319ba4SBarry Smith   if (pcis->vec2_D)      {ierr = VecDestroy(pcis->vec2_D);CHKERRQ(ierr);}
230b4319ba4SBarry Smith   if (pcis->vec3_D)      {ierr = VecDestroy(pcis->vec3_D);CHKERRQ(ierr);}
231b4319ba4SBarry Smith   if (pcis->vec1_B)      {ierr = VecDestroy(pcis->vec1_B);CHKERRQ(ierr);}
232b4319ba4SBarry Smith   if (pcis->vec2_B)      {ierr = VecDestroy(pcis->vec2_B);CHKERRQ(ierr);}
233b4319ba4SBarry Smith   if (pcis->vec3_B)      {ierr = VecDestroy(pcis->vec3_B);CHKERRQ(ierr);}
234b4319ba4SBarry Smith   if (pcis->vec1_global) {ierr = VecDestroy(pcis->vec1_global);CHKERRQ(ierr);}
235b4319ba4SBarry Smith   if (pcis->global_to_D) {ierr = VecScatterDestroy(pcis->global_to_D);CHKERRQ(ierr);}
236b4319ba4SBarry Smith   if (pcis->N_to_B)      {ierr = VecScatterDestroy(pcis->N_to_B);CHKERRQ(ierr);}
237b4319ba4SBarry Smith   if (pcis->global_to_B) {ierr = VecScatterDestroy(pcis->global_to_B);CHKERRQ(ierr);}
23805b42c5fSBarry Smith   ierr = PetscFree(pcis->work_N);CHKERRQ(ierr);
239b4319ba4SBarry Smith   if (pcis->ISLocalToGlobalMappingGetInfoWasCalled) {
240b4319ba4SBarry Smith     ierr = ISLocalToGlobalMappingRestoreInfo((ISLocalToGlobalMapping)0,&(pcis->n_neigh),&(pcis->neigh),&(pcis->n_shared),&(pcis->shared));CHKERRQ(ierr);
241b4319ba4SBarry Smith   }
242b4319ba4SBarry Smith   PetscFunctionReturn(0);
243b4319ba4SBarry Smith }
244b4319ba4SBarry Smith 
245b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */
246b4319ba4SBarry Smith /*
247b4319ba4SBarry Smith    PCISCreate -
248b4319ba4SBarry Smith */
249b4319ba4SBarry Smith #undef __FUNCT__
250b4319ba4SBarry Smith #define __FUNCT__ "PCISCreate"
251dba47a55SKris Buschelman PetscErrorCode PETSCKSP_DLLEXPORT PCISCreate(PC pc)
252b4319ba4SBarry Smith {
253b4319ba4SBarry Smith   PC_IS *pcis = (PC_IS*)(pc->data);
254b4319ba4SBarry Smith 
255b4319ba4SBarry Smith   PetscFunctionBegin;
256b4319ba4SBarry Smith   pcis->is_B_local  = 0;
257b4319ba4SBarry Smith   pcis->is_I_local  = 0;
258b4319ba4SBarry Smith   pcis->is_B_global = 0;
259b4319ba4SBarry Smith   pcis->is_I_global = 0;
260b4319ba4SBarry Smith   pcis->A_II        = 0;
261b4319ba4SBarry Smith   pcis->A_IB        = 0;
262b4319ba4SBarry Smith   pcis->A_BI        = 0;
263b4319ba4SBarry Smith   pcis->A_BB        = 0;
264b4319ba4SBarry Smith   pcis->D           = 0;
265b4319ba4SBarry Smith   pcis->ksp_N      = 0;
266b4319ba4SBarry Smith   pcis->ksp_D      = 0;
267b4319ba4SBarry Smith   pcis->vec1_N      = 0;
268b4319ba4SBarry Smith   pcis->vec2_N      = 0;
269b4319ba4SBarry Smith   pcis->vec1_D      = 0;
270b4319ba4SBarry Smith   pcis->vec2_D      = 0;
271b4319ba4SBarry Smith   pcis->vec3_D      = 0;
272b4319ba4SBarry Smith   pcis->vec1_B      = 0;
273b4319ba4SBarry Smith   pcis->vec2_B      = 0;
274b4319ba4SBarry Smith   pcis->vec3_B      = 0;
275b4319ba4SBarry Smith   pcis->vec1_global = 0;
276b4319ba4SBarry Smith   pcis->work_N      = 0;
277b4319ba4SBarry Smith   pcis->global_to_D = 0;
278b4319ba4SBarry Smith   pcis->N_to_B      = 0;
279b4319ba4SBarry Smith   pcis->global_to_B = 0;
280b4319ba4SBarry Smith   pcis->ISLocalToGlobalMappingGetInfoWasCalled = PETSC_FALSE;
281b4319ba4SBarry Smith   PetscFunctionReturn(0);
282b4319ba4SBarry Smith }
283b4319ba4SBarry Smith 
284b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */
285b4319ba4SBarry Smith /*
286b4319ba4SBarry Smith    PCISApplySchur -
287b4319ba4SBarry Smith 
288b4319ba4SBarry Smith    Input parameters:
289b4319ba4SBarry Smith .  pc - preconditioner context
290b4319ba4SBarry Smith .  v - vector to which the Schur complement is to be applied (it is NOT modified inside this function, UNLESS vec2_B is null)
291b4319ba4SBarry Smith 
292b4319ba4SBarry Smith    Output parameters:
293b4319ba4SBarry Smith .  vec1_B - result of Schur complement applied to chunk
294b4319ba4SBarry Smith .  vec2_B - garbage (used as work space), or null (and v is used as workspace)
295b4319ba4SBarry Smith .  vec1_D - garbage (used as work space)
296b4319ba4SBarry Smith .  vec2_D - garbage (used as work space)
297b4319ba4SBarry Smith 
298b4319ba4SBarry Smith */
299b4319ba4SBarry Smith #undef __FUNCT__
300b4319ba4SBarry Smith #define __FUNCT__ "PCIterSuApplySchur"
301dba47a55SKris Buschelman PetscErrorCode PETSCKSP_DLLEXPORT PCISApplySchur(PC pc, Vec v, Vec vec1_B, Vec vec2_B, Vec vec1_D, Vec vec2_D)
302b4319ba4SBarry Smith {
303dfbe8321SBarry Smith   PetscErrorCode ierr;
304b4319ba4SBarry Smith   PC_IS          *pcis = (PC_IS*)(pc->data);
305b4319ba4SBarry Smith 
306b4319ba4SBarry Smith   PetscFunctionBegin;
30713f74950SBarry Smith   if (!vec2_B) { vec2_B = v; }
308b4319ba4SBarry Smith 
309b4319ba4SBarry Smith   ierr = MatMult(pcis->A_BB,v,vec1_B);CHKERRQ(ierr);
310b4319ba4SBarry Smith   ierr = MatMult(pcis->A_IB,v,vec1_D);CHKERRQ(ierr);
31123ce1328SBarry Smith   ierr = KSPSolve(pcis->ksp_D,vec1_D,vec2_D);CHKERRQ(ierr);
312b4319ba4SBarry Smith   ierr = MatMult(pcis->A_BI,vec2_D,vec2_B);CHKERRQ(ierr);
313efb30889SBarry Smith   ierr = VecAXPY(vec1_B,-1.0,vec2_B);CHKERRQ(ierr);
314b4319ba4SBarry Smith   PetscFunctionReturn(0);
315b4319ba4SBarry Smith }
316b4319ba4SBarry Smith 
317b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */
318b4319ba4SBarry Smith /*
319b4319ba4SBarry Smith    PCISScatterArrayNToVecB - Scatters interface node values from a big array (of all local nodes, interior or interface,
320b4319ba4SBarry Smith    including ghosts) into an interface vector, when in SCATTER_FORWARD mode, or vice-versa, when in SCATTER_REVERSE
321b4319ba4SBarry Smith    mode.
322b4319ba4SBarry Smith 
323b4319ba4SBarry Smith    Input parameters:
324b4319ba4SBarry Smith .  pc - preconditioner context
325b4319ba4SBarry Smith .  array_N - [when in SCATTER_FORWARD mode] Array to be scattered into the vector
326b4319ba4SBarry Smith .  v_B - [when in SCATTER_REVERSE mode] Vector to be scattered into the array
327b4319ba4SBarry Smith 
328b4319ba4SBarry Smith    Output parameter:
329b4319ba4SBarry Smith .  array_N - [when in SCATTER_REVERSE mode] Array to receive the scattered vector
330b4319ba4SBarry Smith .  v_B - [when in SCATTER_FORWARD mode] Vector to receive the scattered array
331b4319ba4SBarry Smith 
332b4319ba4SBarry Smith    Notes:
333b4319ba4SBarry Smith    The entries in the array that do not correspond to interface nodes remain unaltered.
334b4319ba4SBarry Smith */
335b4319ba4SBarry Smith #undef __FUNCT__
336b4319ba4SBarry Smith #define __FUNCT__ "PCISScatterArrayNToVecB"
337dba47a55SKris Buschelman PetscErrorCode PETSCKSP_DLLEXPORT PCISScatterArrayNToVecB (PetscScalar *array_N, Vec v_B, InsertMode imode, ScatterMode smode, PC pc)
338b4319ba4SBarry Smith {
339*5d0c19d7SBarry Smith   PetscInt       i;
340*5d0c19d7SBarry Smith   const PetscInt *idex;
3416849ba73SBarry Smith   PetscErrorCode ierr;
342b4319ba4SBarry Smith   PetscScalar    *array_B;
343b4319ba4SBarry Smith   PC_IS          *pcis = (PC_IS*)(pc->data);
344b4319ba4SBarry Smith 
345b4319ba4SBarry Smith   PetscFunctionBegin;
346b4319ba4SBarry Smith   ierr = VecGetArray(v_B,&array_B);CHKERRQ(ierr);
347b4319ba4SBarry Smith   ierr = ISGetIndices(pcis->is_B_local,&idex);CHKERRQ(ierr);
348b4319ba4SBarry Smith 
349b4319ba4SBarry Smith   if (smode == SCATTER_FORWARD) {
350b4319ba4SBarry Smith     if (imode == INSERT_VALUES) {
351b4319ba4SBarry Smith       for (i=0; i<pcis->n_B; i++) { array_B[i]  = array_N[idex[i]]; }
352b4319ba4SBarry Smith     } else {  /* ADD_VALUES */
353b4319ba4SBarry Smith       for (i=0; i<pcis->n_B; i++) { array_B[i] += array_N[idex[i]]; }
354b4319ba4SBarry Smith     }
355b4319ba4SBarry Smith   } else {  /* SCATTER_REVERSE */
356b4319ba4SBarry Smith     if (imode == INSERT_VALUES) {
357b4319ba4SBarry Smith       for (i=0; i<pcis->n_B; i++) { array_N[idex[i]]  = array_B[i]; }
358b4319ba4SBarry Smith     } else {  /* ADD_VALUES */
359b4319ba4SBarry Smith       for (i=0; i<pcis->n_B; i++) { array_N[idex[i]] += array_B[i]; }
360b4319ba4SBarry Smith     }
361b4319ba4SBarry Smith   }
362b4319ba4SBarry Smith   ierr = ISRestoreIndices(pcis->is_B_local,&idex);CHKERRQ(ierr);
363b4319ba4SBarry Smith   ierr = VecRestoreArray(v_B,&array_B);CHKERRQ(ierr);
364b4319ba4SBarry Smith   PetscFunctionReturn(0);
365b4319ba4SBarry Smith }
366b4319ba4SBarry Smith 
367b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */
368b4319ba4SBarry Smith /*
369b4319ba4SBarry Smith    PCISApplyInvSchur - Solves the Neumann problem related to applying the inverse of the Schur complement.
370b4319ba4SBarry Smith    More precisely, solves the problem:
371b4319ba4SBarry Smith                                         [ A_II  A_IB ] [ . ]   [ 0 ]
372b4319ba4SBarry Smith                                         [            ] [   ] = [   ]
373b4319ba4SBarry Smith                                         [ A_BI  A_BB ] [ x ]   [ b ]
374b4319ba4SBarry Smith 
375b4319ba4SBarry Smith    Input parameters:
376b4319ba4SBarry Smith .  pc - preconditioner context
377b4319ba4SBarry Smith .  b - vector of local interface nodes (including ghosts)
378b4319ba4SBarry Smith 
379b4319ba4SBarry Smith    Output parameters:
380b4319ba4SBarry Smith .  x - vector of local interface nodes (including ghosts); returns the application of the inverse of the Schur
381b4319ba4SBarry Smith        complement to b
382b4319ba4SBarry Smith .  vec1_N - vector of local nodes (interior and interface, including ghosts); returns garbage (used as work space)
383b4319ba4SBarry Smith .  vec2_N - vector of local nodes (interior and interface, including ghosts); returns garbage (used as work space)
384b4319ba4SBarry Smith 
385b4319ba4SBarry Smith */
386b4319ba4SBarry Smith #undef __FUNCT__
387b4319ba4SBarry Smith #define __FUNCT__ "PCISApplyInvSchur"
388dba47a55SKris Buschelman PetscErrorCode PETSCKSP_DLLEXPORT PCISApplyInvSchur (PC pc, Vec b, Vec x, Vec vec1_N, Vec vec2_N)
389b4319ba4SBarry Smith {
390dfbe8321SBarry Smith   PetscErrorCode ierr;
391b4319ba4SBarry Smith   PC_IS          *pcis = (PC_IS*)(pc->data);
392b4319ba4SBarry Smith 
393b4319ba4SBarry Smith   PetscFunctionBegin;
394b4319ba4SBarry Smith   /*
395b4319ba4SBarry Smith     Neumann solvers.
396b4319ba4SBarry Smith     Applying the inverse of the local Schur complement, i.e, solving a Neumann
397b4319ba4SBarry Smith     Problem with zero at the interior nodes of the RHS and extracting the interface
398b4319ba4SBarry Smith     part of the solution. inverse Schur complement is applied to b and the result
399b4319ba4SBarry Smith     is stored in x.
400b4319ba4SBarry Smith   */
401b4319ba4SBarry Smith   /* Setting the RHS vec1_N */
402efb30889SBarry Smith   ierr = VecSet(vec1_N,0.0);CHKERRQ(ierr);
403ca9f406cSSatish Balay   ierr = VecScatterBegin(pcis->N_to_B,b,vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
404ca9f406cSSatish Balay   ierr = VecScatterEnd  (pcis->N_to_B,b,vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
405b4319ba4SBarry Smith   /* Checking for consistency of the RHS */
406b4319ba4SBarry Smith   {
407b4319ba4SBarry Smith     PetscTruth flg;
408b4319ba4SBarry Smith     ierr = PetscOptionsHasName(PETSC_NULL,"-pc_is_check_consistency",&flg);CHKERRQ(ierr);
409b4319ba4SBarry Smith     if (flg) {
410b4319ba4SBarry Smith       PetscScalar average;
4113050cee2SBarry Smith       PetscViewer viewer;
4127adad957SLisandro Dalcin       ierr = PetscViewerASCIIGetStdout(((PetscObject)pc)->comm,&viewer);CHKERRQ(ierr);
4133050cee2SBarry Smith 
414b4319ba4SBarry Smith       ierr = VecSum(vec1_N,&average);CHKERRQ(ierr);
415b4319ba4SBarry Smith       average = average / ((PetscReal)pcis->n);
416b4319ba4SBarry Smith       if (pcis->pure_neumann) {
4173050cee2SBarry Smith 
4183050cee2SBarry Smith         ierr = PetscViewerASCIISynchronizedPrintf(viewer,"Subdomain %04d is floating. Average = % 1.14e\n",
419b4319ba4SBarry Smith                                              PetscGlobalRank,PetscAbsScalar(average));CHKERRQ(ierr);
420b4319ba4SBarry Smith       } else {
4213050cee2SBarry Smith         ierr = PetscViewerASCIISynchronizedPrintf(viewer,"Subdomain %04d is fixed.    Average = % 1.14e\n",
422b4319ba4SBarry Smith                                              PetscGlobalRank,PetscAbsScalar(average));CHKERRQ(ierr);
423b4319ba4SBarry Smith       }
4243050cee2SBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
425b4319ba4SBarry Smith     }
426b4319ba4SBarry Smith   }
427b4319ba4SBarry Smith   /* Solving the system for vec2_N */
42823ce1328SBarry Smith   ierr = KSPSolve(pcis->ksp_N,vec1_N,vec2_N);CHKERRQ(ierr);
429b4319ba4SBarry Smith   /* Extracting the local interface vector out of the solution */
430ca9f406cSSatish Balay   ierr = VecScatterBegin(pcis->N_to_B,vec2_N,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
431ca9f406cSSatish Balay   ierr = VecScatterEnd  (pcis->N_to_B,vec2_N,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
432b4319ba4SBarry Smith   PetscFunctionReturn(0);
433b4319ba4SBarry Smith }
434b4319ba4SBarry Smith 
435b4319ba4SBarry Smith 
436b4319ba4SBarry Smith 
437b4319ba4SBarry Smith 
438b4319ba4SBarry Smith 
439b4319ba4SBarry Smith 
440b4319ba4SBarry Smith 
441b4319ba4SBarry Smith 
442b4319ba4SBarry Smith 
443