123ce1328SBarry Smith 2b4319ba4SBarry Smith #include "src/ksp/pc/impls/is/pcis.h" 3b4319ba4SBarry Smith 4b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */ 5b4319ba4SBarry Smith /* 6b4319ba4SBarry Smith PCISSetUp - 7b4319ba4SBarry Smith */ 8b4319ba4SBarry Smith #undef __FUNCT__ 9b4319ba4SBarry Smith #define __FUNCT__ "PCISSetUp" 10dfbe8321SBarry Smith PetscErrorCode PCISSetUp(PC pc) 11b4319ba4SBarry Smith { 12b4319ba4SBarry Smith PC_IS *pcis = (PC_IS*)(pc->data); 13b4319ba4SBarry Smith Mat_IS *matis = (Mat_IS*)pc->mat->data; 14*6849ba73SBarry Smith int i; 15*6849ba73SBarry Smith PetscErrorCode ierr; 16b4319ba4SBarry Smith PetscTruth flg; 17b4319ba4SBarry Smith 18b4319ba4SBarry Smith PetscFunctionBegin; 19b4319ba4SBarry Smith ierr = PetscTypeCompare((PetscObject)pc->mat,MATIS,&flg);CHKERRQ(ierr); 20b4319ba4SBarry Smith if (!flg){ 21b4319ba4SBarry Smith SETERRQ(1,"Preconditioner type of Neumann Neumman requires matrix of type MATIS"); 22b4319ba4SBarry Smith } 23b4319ba4SBarry Smith 24b4319ba4SBarry Smith pcis->pure_neumann = matis->pure_neumann; 25b4319ba4SBarry Smith 26b4319ba4SBarry Smith /* 27b4319ba4SBarry Smith Creating the local vector vec1_N, containing the inverse of the number 28b4319ba4SBarry Smith of subdomains to which each local node (either owned or ghost) 29b4319ba4SBarry Smith pertains. To accomplish that, we scatter local vectors of 1's to 30b4319ba4SBarry Smith a global vector (adding the values); scatter the result back to 31b4319ba4SBarry Smith local vectors and finally invert the result. 32b4319ba4SBarry Smith */ 33b4319ba4SBarry Smith { 34b4319ba4SBarry Smith Vec counter; 35b4319ba4SBarry Smith PetscScalar one=1.0, zero=0.0; 36b4319ba4SBarry Smith ierr = VecDuplicate(matis->x,&pcis->vec1_N);CHKERRQ(ierr); 3723ce1328SBarry Smith ierr = MatGetVecs(pc->pmat,&counter,0);CHKERRQ(ierr); /* temporary auxiliar vector */ 38b4319ba4SBarry Smith ierr = VecSet(&zero,counter);CHKERRQ(ierr); 39b4319ba4SBarry Smith ierr = VecSet(&one,pcis->vec1_N);CHKERRQ(ierr); 40b4319ba4SBarry Smith ierr = VecScatterBegin(pcis->vec1_N,counter,ADD_VALUES,SCATTER_REVERSE,matis->ctx);CHKERRQ(ierr); 41b4319ba4SBarry Smith ierr = VecScatterEnd (pcis->vec1_N,counter,ADD_VALUES,SCATTER_REVERSE,matis->ctx);CHKERRQ(ierr); 42b4319ba4SBarry Smith ierr = VecScatterBegin(counter,pcis->vec1_N,INSERT_VALUES,SCATTER_FORWARD,matis->ctx);CHKERRQ(ierr); 43b4319ba4SBarry Smith ierr = VecScatterEnd (counter,pcis->vec1_N,INSERT_VALUES,SCATTER_FORWARD,matis->ctx);CHKERRQ(ierr); 44b4319ba4SBarry Smith ierr = VecDestroy(counter);CHKERRQ(ierr); 45b4319ba4SBarry Smith } 46b4319ba4SBarry Smith /* 47b4319ba4SBarry Smith Creating local and global index sets for interior and 48b4319ba4SBarry Smith inteface nodes. Notice that interior nodes have D[i]==1.0. 49b4319ba4SBarry Smith */ 50b4319ba4SBarry Smith { 51b4319ba4SBarry Smith int n_I; 52b4319ba4SBarry Smith int *idx_I_local,*idx_B_local,*idx_I_global,*idx_B_global; 53b4319ba4SBarry Smith PetscScalar *array; 54b4319ba4SBarry Smith /* Identifying interior and interface nodes, in local numbering */ 55b4319ba4SBarry Smith ierr = VecGetSize(pcis->vec1_N,&pcis->n);CHKERRQ(ierr); 56b4319ba4SBarry Smith ierr = VecGetArray(pcis->vec1_N,&array);CHKERRQ(ierr); 57b4319ba4SBarry Smith ierr = PetscMalloc(pcis->n*sizeof(int),&idx_I_local);CHKERRQ(ierr); 58b4319ba4SBarry Smith ierr = PetscMalloc(pcis->n*sizeof(int),&idx_B_local);CHKERRQ(ierr); 59b4319ba4SBarry Smith for (i=0, pcis->n_B=0, n_I=0; i<pcis->n; i++) { 60b4319ba4SBarry Smith if (array[i] == 1.0) { idx_I_local[n_I] = i; n_I++; } 61b4319ba4SBarry Smith else { idx_B_local[pcis->n_B] = i; pcis->n_B++; } 62b4319ba4SBarry Smith } 63b4319ba4SBarry Smith /* Getting the global numbering */ 64b4319ba4SBarry Smith idx_B_global = idx_I_local + n_I; /* Just avoiding allocating extra memory, since we have vacant space */ 65b4319ba4SBarry Smith idx_I_global = idx_B_local + pcis->n_B; 66b4319ba4SBarry Smith ierr = ISLocalToGlobalMappingApply(matis->mapping,pcis->n_B,idx_B_local,idx_B_global);CHKERRQ(ierr); 67b4319ba4SBarry Smith ierr = ISLocalToGlobalMappingApply(matis->mapping,n_I, idx_I_local,idx_I_global);CHKERRQ(ierr); 68b4319ba4SBarry Smith /* Creating the index sets. */ 69b4319ba4SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,pcis->n_B,idx_B_local, &pcis->is_B_local);CHKERRQ(ierr); 70b4319ba4SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,pcis->n_B,idx_B_global,&pcis->is_B_global);CHKERRQ(ierr); 71b4319ba4SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,n_I ,idx_I_local, &pcis->is_I_local);CHKERRQ(ierr); 72b4319ba4SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,n_I ,idx_I_global,&pcis->is_I_global);CHKERRQ(ierr); 73b4319ba4SBarry Smith /* Freeing memory and restoring arrays */ 74b4319ba4SBarry Smith ierr = PetscFree(idx_B_local);CHKERRQ(ierr); 75b4319ba4SBarry Smith ierr = PetscFree(idx_I_local);CHKERRQ(ierr); 76b4319ba4SBarry Smith ierr = VecRestoreArray(pcis->vec1_N,&array);CHKERRQ(ierr); 77b4319ba4SBarry Smith } 78b4319ba4SBarry Smith 79b4319ba4SBarry Smith /* 80b4319ba4SBarry Smith Extracting the blocks A_II, A_BI, A_IB and A_BB from A. If the numbering 81b4319ba4SBarry Smith is such that interior nodes come first than the interface ones, we have 82b4319ba4SBarry Smith 83b4319ba4SBarry Smith [ | ] 84b4319ba4SBarry Smith [ A_II | A_IB ] 85b4319ba4SBarry Smith A = [ | ] 86b4319ba4SBarry Smith [-----------+------] 87b4319ba4SBarry Smith [ A_BI | A_BB ] 88b4319ba4SBarry Smith */ 89b4319ba4SBarry Smith 90b4319ba4SBarry Smith ierr = MatGetSubMatrix(matis->A,pcis->is_I_local,pcis->is_I_local,PETSC_DECIDE,MAT_INITIAL_MATRIX,&pcis->A_II);CHKERRQ(ierr); 91b4319ba4SBarry Smith ierr = MatGetSubMatrix(matis->A,pcis->is_I_local,pcis->is_B_local,PETSC_DECIDE,MAT_INITIAL_MATRIX,&pcis->A_IB);CHKERRQ(ierr); 92b4319ba4SBarry Smith ierr = MatGetSubMatrix(matis->A,pcis->is_B_local,pcis->is_I_local,PETSC_DECIDE,MAT_INITIAL_MATRIX,&pcis->A_BI);CHKERRQ(ierr); 93b4319ba4SBarry Smith ierr = MatGetSubMatrix(matis->A,pcis->is_B_local,pcis->is_B_local,PETSC_DECIDE,MAT_INITIAL_MATRIX,&pcis->A_BB);CHKERRQ(ierr); 94b4319ba4SBarry Smith 95b4319ba4SBarry Smith /* 96b4319ba4SBarry Smith Creating work vectors and arrays 97b4319ba4SBarry Smith */ 98b4319ba4SBarry Smith /* pcis->vec1_N has already been created */ 99b4319ba4SBarry Smith ierr = VecDuplicate(pcis->vec1_N,&pcis->vec2_N);CHKERRQ(ierr); 100b4319ba4SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,pcis->n-pcis->n_B,&pcis->vec1_D);CHKERRQ(ierr); 101b4319ba4SBarry Smith ierr = VecDuplicate(pcis->vec1_D,&pcis->vec2_D);CHKERRQ(ierr); 102b4319ba4SBarry Smith ierr = VecDuplicate(pcis->vec1_D,&pcis->vec3_D);CHKERRQ(ierr); 103b4319ba4SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,pcis->n_B,&pcis->vec1_B);CHKERRQ(ierr); 104b4319ba4SBarry Smith ierr = VecDuplicate(pcis->vec1_B,&pcis->vec2_B);CHKERRQ(ierr); 105b4319ba4SBarry Smith ierr = VecDuplicate(pcis->vec1_B,&pcis->vec3_B);CHKERRQ(ierr); 10623ce1328SBarry Smith ierr = MatGetVecs(pc->pmat,&pcis->vec1_global,0);CHKERRQ(ierr); 107b4319ba4SBarry Smith ierr = PetscMalloc((pcis->n)*sizeof(PetscScalar),&pcis->work_N);CHKERRQ(ierr); 108b4319ba4SBarry Smith 109b4319ba4SBarry Smith /* Creating the scatter contexts */ 11023ce1328SBarry Smith ierr = VecScatterCreate(pcis->vec1_global,pcis->is_I_global,pcis->vec1_D,(IS)0,&pcis->global_to_D);CHKERRQ(ierr); 111b4319ba4SBarry Smith ierr = VecScatterCreate(pcis->vec1_N,pcis->is_B_local,pcis->vec1_B,(IS)0,&pcis->N_to_B);CHKERRQ(ierr); 11223ce1328SBarry Smith ierr = VecScatterCreate(pcis->vec1_global,pcis->is_B_global,pcis->vec1_B,(IS)0,&pcis->global_to_B);CHKERRQ(ierr); 113b4319ba4SBarry Smith 114b4319ba4SBarry Smith /* Creating scaling "matrix" D, from information in vec1_N */ 115b4319ba4SBarry Smith ierr = VecDuplicate(pcis->vec1_B,&pcis->D);CHKERRQ(ierr); 116b4319ba4SBarry Smith ierr = VecScatterBegin(pcis->vec1_N,pcis->D,INSERT_VALUES,SCATTER_FORWARD,pcis->N_to_B);CHKERRQ(ierr); 117b4319ba4SBarry Smith ierr = VecScatterEnd (pcis->vec1_N,pcis->D,INSERT_VALUES,SCATTER_FORWARD,pcis->N_to_B);CHKERRQ(ierr); 118b4319ba4SBarry Smith ierr = VecReciprocal(pcis->D);CHKERRQ(ierr); 119b4319ba4SBarry Smith 120b4319ba4SBarry Smith /* See historical note 01, at the bottom of this file. */ 121b4319ba4SBarry Smith 122b4319ba4SBarry Smith /* 123b4319ba4SBarry Smith Creating the KSP contexts for the local Dirichlet and Neumann problems. 124b4319ba4SBarry Smith */ 125b4319ba4SBarry Smith { 126b4319ba4SBarry Smith PC pc_ctx; 127b4319ba4SBarry Smith /* Dirichlet */ 128b4319ba4SBarry Smith ierr = KSPCreate(PETSC_COMM_SELF,&pcis->ksp_D);CHKERRQ(ierr); 129b4319ba4SBarry Smith ierr = KSPSetOperators(pcis->ksp_D,pcis->A_II,pcis->A_II,SAME_PRECONDITIONER);CHKERRQ(ierr); 130b4319ba4SBarry Smith ierr = KSPSetOptionsPrefix(pcis->ksp_D,"is_localD_");CHKERRQ(ierr); 131b4319ba4SBarry Smith ierr = KSPGetPC(pcis->ksp_D,&pc_ctx);CHKERRQ(ierr); 132b4319ba4SBarry Smith ierr = PCSetType(pc_ctx,PCLU);CHKERRQ(ierr); 133b4319ba4SBarry Smith ierr = KSPSetType(pcis->ksp_D,KSPPREONLY);CHKERRQ(ierr); 134b4319ba4SBarry Smith ierr = KSPSetFromOptions(pcis->ksp_D);CHKERRQ(ierr); 135b4319ba4SBarry Smith /* the vectors in the following line are dummy arguments, just telling the KSP the vector size. Values are not used */ 136b4319ba4SBarry Smith ierr = KSPSetUp(pcis->ksp_D);CHKERRQ(ierr); 137b4319ba4SBarry Smith /* Neumann */ 138b4319ba4SBarry Smith ierr = KSPCreate(PETSC_COMM_SELF,&pcis->ksp_N);CHKERRQ(ierr); 139b4319ba4SBarry Smith ierr = KSPSetOperators(pcis->ksp_N,matis->A,matis->A,SAME_PRECONDITIONER);CHKERRQ(ierr); 140b4319ba4SBarry Smith ierr = KSPSetOptionsPrefix(pcis->ksp_N,"is_localN_");CHKERRQ(ierr); 141b4319ba4SBarry Smith ierr = KSPGetPC(pcis->ksp_N,&pc_ctx);CHKERRQ(ierr); 142b4319ba4SBarry Smith ierr = PCSetType(pc_ctx,PCLU);CHKERRQ(ierr); 143b4319ba4SBarry Smith ierr = KSPSetType(pcis->ksp_N,KSPPREONLY);CHKERRQ(ierr); 144b4319ba4SBarry Smith ierr = KSPSetFromOptions(pcis->ksp_N);CHKERRQ(ierr); 145b4319ba4SBarry Smith { 146b4319ba4SBarry Smith PetscTruth damp_fixed, 147b4319ba4SBarry Smith remove_nullspace_fixed, 148b4319ba4SBarry Smith set_damping_factor_floating, 149b4319ba4SBarry Smith not_damp_floating, 150b4319ba4SBarry Smith not_remove_nullspace_floating; 151b4319ba4SBarry Smith PetscReal fixed_factor, 152b4319ba4SBarry Smith floating_factor; 153b4319ba4SBarry Smith 154b4319ba4SBarry Smith ierr = PetscOptionsGetReal(pc_ctx->prefix,"-pc_is_damp_fixed",&fixed_factor,&damp_fixed);CHKERRQ(ierr); 155b4319ba4SBarry Smith if (!damp_fixed) { fixed_factor = 0.0; } 156b4319ba4SBarry Smith ierr = PetscOptionsHasName(pc_ctx->prefix,"-pc_is_damp_fixed",&damp_fixed);CHKERRQ(ierr); 157b4319ba4SBarry Smith 158b4319ba4SBarry Smith ierr = PetscOptionsHasName(pc_ctx->prefix,"-pc_is_remove_nullspace_fixed",&remove_nullspace_fixed);CHKERRQ(ierr); 159b4319ba4SBarry Smith 160b4319ba4SBarry Smith ierr = PetscOptionsGetReal(pc_ctx->prefix,"-pc_is_set_damping_factor_floating", 161b4319ba4SBarry Smith &floating_factor,&set_damping_factor_floating);CHKERRQ(ierr); 162b4319ba4SBarry Smith if (!set_damping_factor_floating) { floating_factor = 0.0; } 163b4319ba4SBarry Smith ierr = PetscOptionsHasName(pc_ctx->prefix,"-pc_is_set_damping_factor_floating",&set_damping_factor_floating);CHKERRQ(ierr); 164b4319ba4SBarry Smith if (!set_damping_factor_floating) { floating_factor = 1.e-12; } 165b4319ba4SBarry Smith 166b4319ba4SBarry Smith ierr = PetscOptionsHasName(pc_ctx->prefix,"-pc_is_not_damp_floating",¬_damp_floating);CHKERRQ(ierr); 167b4319ba4SBarry Smith 168b4319ba4SBarry Smith ierr = PetscOptionsHasName(pc_ctx->prefix,"-pc_is_not_remove_nullspace_floating",¬_remove_nullspace_floating);CHKERRQ(ierr); 169b4319ba4SBarry Smith 170b4319ba4SBarry Smith if (pcis->pure_neumann) { /* floating subdomain */ 171b4319ba4SBarry Smith if (!(not_damp_floating)) { 172b4319ba4SBarry Smith ierr = PCLUSetDamping (pc_ctx,floating_factor);CHKERRQ(ierr); 173b4319ba4SBarry Smith ierr = PCILUSetDamping(pc_ctx,floating_factor);CHKERRQ(ierr); 174b4319ba4SBarry Smith } 175b4319ba4SBarry Smith if (!(not_remove_nullspace_floating)){ 176b4319ba4SBarry Smith MatNullSpace nullsp; 177b4319ba4SBarry Smith ierr = MatNullSpaceCreate(PETSC_COMM_SELF,1,0,PETSC_NULL,&nullsp);CHKERRQ(ierr); 178d8fd42c4SBarry Smith ierr = KSPSetNullSpace(pcis->ksp_N,nullsp);CHKERRQ(ierr); 179b4319ba4SBarry Smith ierr = MatNullSpaceDestroy(nullsp);CHKERRQ(ierr); 180b4319ba4SBarry Smith } 181b4319ba4SBarry Smith } else { /* fixed subdomain */ 182b4319ba4SBarry Smith if (damp_fixed) { 183b4319ba4SBarry Smith ierr = PCLUSetDamping (pc_ctx,fixed_factor);CHKERRQ(ierr); 184b4319ba4SBarry Smith ierr = PCILUSetDamping(pc_ctx,fixed_factor);CHKERRQ(ierr); 185b4319ba4SBarry Smith } 186b4319ba4SBarry Smith if (remove_nullspace_fixed) { 187b4319ba4SBarry Smith MatNullSpace nullsp; 188b4319ba4SBarry Smith ierr = MatNullSpaceCreate(PETSC_COMM_SELF,1,0,PETSC_NULL,&nullsp);CHKERRQ(ierr); 189d8fd42c4SBarry Smith ierr = KSPSetNullSpace(pcis->ksp_N,nullsp);CHKERRQ(ierr); 190b4319ba4SBarry Smith ierr = MatNullSpaceDestroy(nullsp);CHKERRQ(ierr); 191b4319ba4SBarry Smith } 192b4319ba4SBarry Smith } 193b4319ba4SBarry Smith } 194b4319ba4SBarry Smith /* the vectors in the following line are dummy arguments, just telling the KSP the vector size. Values are not used */ 195b4319ba4SBarry Smith ierr = KSPSetUp(pcis->ksp_N);CHKERRQ(ierr); 196b4319ba4SBarry Smith } 197b4319ba4SBarry Smith 198b4319ba4SBarry Smith ierr = ISLocalToGlobalMappingGetInfo(((Mat_IS*)(pc->mat->data))->mapping,&(pcis->n_neigh),&(pcis->neigh), 199b4319ba4SBarry Smith &(pcis->n_shared),&(pcis->shared));CHKERRQ(ierr); 200b4319ba4SBarry Smith pcis->ISLocalToGlobalMappingGetInfoWasCalled = PETSC_TRUE; 201b4319ba4SBarry Smith 202b4319ba4SBarry Smith PetscFunctionReturn(0); 203b4319ba4SBarry Smith } 204b4319ba4SBarry Smith 205b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */ 206b4319ba4SBarry Smith /* 207b4319ba4SBarry Smith PCISDestroy - 208b4319ba4SBarry Smith */ 209b4319ba4SBarry Smith #undef __FUNCT__ 210b4319ba4SBarry Smith #define __FUNCT__ "PCISDestroy" 211dfbe8321SBarry Smith PetscErrorCode PCISDestroy(PC pc) 212b4319ba4SBarry Smith { 213b4319ba4SBarry Smith PC_IS *pcis = (PC_IS*)(pc->data); 214dfbe8321SBarry Smith PetscErrorCode ierr; 215b4319ba4SBarry Smith 216b4319ba4SBarry Smith PetscFunctionBegin; 217b4319ba4SBarry Smith 218b4319ba4SBarry Smith if (pcis->is_B_local) {ierr = ISDestroy(pcis->is_B_local);CHKERRQ(ierr);} 219b4319ba4SBarry Smith if (pcis->is_I_local) {ierr = ISDestroy(pcis->is_I_local);CHKERRQ(ierr);} 220b4319ba4SBarry Smith if (pcis->is_B_global) {ierr = ISDestroy(pcis->is_B_global);CHKERRQ(ierr);} 221b4319ba4SBarry Smith if (pcis->is_I_global) {ierr = ISDestroy(pcis->is_I_global);CHKERRQ(ierr);} 222b4319ba4SBarry Smith if (pcis->A_II) {ierr = MatDestroy(pcis->A_II);CHKERRQ(ierr);} 223b4319ba4SBarry Smith if (pcis->A_IB) {ierr = MatDestroy(pcis->A_IB);CHKERRQ(ierr);} 224b4319ba4SBarry Smith if (pcis->A_BI) {ierr = MatDestroy(pcis->A_BI);CHKERRQ(ierr);} 225b4319ba4SBarry Smith if (pcis->A_BB) {ierr = MatDestroy(pcis->A_BB);CHKERRQ(ierr);} 226b4319ba4SBarry Smith if (pcis->D) {ierr = VecDestroy(pcis->D);CHKERRQ(ierr);} 227b4319ba4SBarry Smith if (pcis->ksp_N) {ierr = KSPDestroy(pcis->ksp_N);CHKERRQ(ierr);} 228b4319ba4SBarry Smith if (pcis->ksp_D) {ierr = KSPDestroy(pcis->ksp_D);CHKERRQ(ierr);} 229b4319ba4SBarry Smith if (pcis->vec1_N) {ierr = VecDestroy(pcis->vec1_N);CHKERRQ(ierr);} 230b4319ba4SBarry Smith if (pcis->vec2_N) {ierr = VecDestroy(pcis->vec2_N);CHKERRQ(ierr);} 231b4319ba4SBarry Smith if (pcis->vec1_D) {ierr = VecDestroy(pcis->vec1_D);CHKERRQ(ierr);} 232b4319ba4SBarry Smith if (pcis->vec2_D) {ierr = VecDestroy(pcis->vec2_D);CHKERRQ(ierr);} 233b4319ba4SBarry Smith if (pcis->vec3_D) {ierr = VecDestroy(pcis->vec3_D);CHKERRQ(ierr);} 234b4319ba4SBarry Smith if (pcis->vec1_B) {ierr = VecDestroy(pcis->vec1_B);CHKERRQ(ierr);} 235b4319ba4SBarry Smith if (pcis->vec2_B) {ierr = VecDestroy(pcis->vec2_B);CHKERRQ(ierr);} 236b4319ba4SBarry Smith if (pcis->vec3_B) {ierr = VecDestroy(pcis->vec3_B);CHKERRQ(ierr);} 237b4319ba4SBarry Smith if (pcis->vec1_global) {ierr = VecDestroy(pcis->vec1_global);CHKERRQ(ierr);} 238b4319ba4SBarry Smith if (pcis->work_N) {ierr = PetscFree(pcis->work_N);CHKERRQ(ierr);} 239b4319ba4SBarry Smith if (pcis->global_to_D) {ierr = VecScatterDestroy(pcis->global_to_D);CHKERRQ(ierr);} 240b4319ba4SBarry Smith if (pcis->N_to_B) {ierr = VecScatterDestroy(pcis->N_to_B);CHKERRQ(ierr);} 241b4319ba4SBarry Smith if (pcis->global_to_B) {ierr = VecScatterDestroy(pcis->global_to_B);CHKERRQ(ierr);} 242b4319ba4SBarry Smith if (pcis->ISLocalToGlobalMappingGetInfoWasCalled) { 243b4319ba4SBarry Smith ierr = ISLocalToGlobalMappingRestoreInfo((ISLocalToGlobalMapping)0,&(pcis->n_neigh),&(pcis->neigh),&(pcis->n_shared),&(pcis->shared));CHKERRQ(ierr); 244b4319ba4SBarry Smith } 245b4319ba4SBarry Smith 246b4319ba4SBarry Smith PetscFunctionReturn(0); 247b4319ba4SBarry Smith } 248b4319ba4SBarry Smith 249b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */ 250b4319ba4SBarry Smith /* 251b4319ba4SBarry Smith PCISCreate - 252b4319ba4SBarry Smith */ 253b4319ba4SBarry Smith #undef __FUNCT__ 254b4319ba4SBarry Smith #define __FUNCT__ "PCISCreate" 255*6849ba73SBarry Smith PetscErrorCode PCISCreate(PC pc) 256b4319ba4SBarry Smith { 257b4319ba4SBarry Smith PC_IS *pcis = (PC_IS*)(pc->data); 258b4319ba4SBarry Smith 259b4319ba4SBarry Smith PetscFunctionBegin; 260b4319ba4SBarry Smith 261b4319ba4SBarry Smith pcis->is_B_local = 0; 262b4319ba4SBarry Smith pcis->is_I_local = 0; 263b4319ba4SBarry Smith pcis->is_B_global = 0; 264b4319ba4SBarry Smith pcis->is_I_global = 0; 265b4319ba4SBarry Smith pcis->A_II = 0; 266b4319ba4SBarry Smith pcis->A_IB = 0; 267b4319ba4SBarry Smith pcis->A_BI = 0; 268b4319ba4SBarry Smith pcis->A_BB = 0; 269b4319ba4SBarry Smith pcis->D = 0; 270b4319ba4SBarry Smith pcis->ksp_N = 0; 271b4319ba4SBarry Smith pcis->ksp_D = 0; 272b4319ba4SBarry Smith pcis->vec1_N = 0; 273b4319ba4SBarry Smith pcis->vec2_N = 0; 274b4319ba4SBarry Smith pcis->vec1_D = 0; 275b4319ba4SBarry Smith pcis->vec2_D = 0; 276b4319ba4SBarry Smith pcis->vec3_D = 0; 277b4319ba4SBarry Smith pcis->vec1_B = 0; 278b4319ba4SBarry Smith pcis->vec2_B = 0; 279b4319ba4SBarry Smith pcis->vec3_B = 0; 280b4319ba4SBarry Smith pcis->vec1_global = 0; 281b4319ba4SBarry Smith pcis->work_N = 0; 282b4319ba4SBarry Smith pcis->global_to_D = 0; 283b4319ba4SBarry Smith pcis->N_to_B = 0; 284b4319ba4SBarry Smith pcis->global_to_B = 0; 285b4319ba4SBarry Smith pcis->ISLocalToGlobalMappingGetInfoWasCalled = PETSC_FALSE; 286b4319ba4SBarry Smith 287b4319ba4SBarry Smith PetscFunctionReturn(0); 288b4319ba4SBarry Smith } 289b4319ba4SBarry Smith 290b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */ 291b4319ba4SBarry Smith /* 292b4319ba4SBarry Smith PCISApplySchur - 293b4319ba4SBarry Smith 294b4319ba4SBarry Smith Input parameters: 295b4319ba4SBarry Smith . pc - preconditioner context 296b4319ba4SBarry Smith . v - vector to which the Schur complement is to be applied (it is NOT modified inside this function, UNLESS vec2_B is null) 297b4319ba4SBarry Smith 298b4319ba4SBarry Smith Output parameters: 299b4319ba4SBarry Smith . vec1_B - result of Schur complement applied to chunk 300b4319ba4SBarry Smith . vec2_B - garbage (used as work space), or null (and v is used as workspace) 301b4319ba4SBarry Smith . vec1_D - garbage (used as work space) 302b4319ba4SBarry Smith . vec2_D - garbage (used as work space) 303b4319ba4SBarry Smith 304b4319ba4SBarry Smith */ 305b4319ba4SBarry Smith #undef __FUNCT__ 306b4319ba4SBarry Smith #define __FUNCT__ "PCIterSuApplySchur" 307*6849ba73SBarry Smith PetscErrorCode PCISApplySchur(PC pc, Vec v, Vec vec1_B, Vec vec2_B, Vec vec1_D, Vec vec2_D) 308b4319ba4SBarry Smith { 309dfbe8321SBarry Smith PetscErrorCode ierr; 310b4319ba4SBarry Smith PetscScalar m_one = -1.0; 311b4319ba4SBarry Smith PC_IS *pcis = (PC_IS*)(pc->data); 312b4319ba4SBarry Smith 313b4319ba4SBarry Smith PetscFunctionBegin; 314b4319ba4SBarry Smith 315b4319ba4SBarry Smith if (vec2_B == (Vec)0) { vec2_B = v; } 316b4319ba4SBarry Smith 317b4319ba4SBarry Smith ierr = MatMult(pcis->A_BB,v,vec1_B);CHKERRQ(ierr); 318b4319ba4SBarry Smith ierr = MatMult(pcis->A_IB,v,vec1_D);CHKERRQ(ierr); 31923ce1328SBarry Smith ierr = KSPSolve(pcis->ksp_D,vec1_D,vec2_D);CHKERRQ(ierr); 320b4319ba4SBarry Smith ierr = MatMult(pcis->A_BI,vec2_D,vec2_B);CHKERRQ(ierr); 321b4319ba4SBarry Smith ierr = VecAXPY(&m_one,vec2_B,vec1_B);CHKERRQ(ierr); 322b4319ba4SBarry Smith 323b4319ba4SBarry Smith PetscFunctionReturn(0); 324b4319ba4SBarry Smith } 325b4319ba4SBarry Smith 326b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */ 327b4319ba4SBarry Smith /* 328b4319ba4SBarry Smith PCISScatterArrayNToVecB - Scatters interface node values from a big array (of all local nodes, interior or interface, 329b4319ba4SBarry Smith including ghosts) into an interface vector, when in SCATTER_FORWARD mode, or vice-versa, when in SCATTER_REVERSE 330b4319ba4SBarry Smith mode. 331b4319ba4SBarry Smith 332b4319ba4SBarry Smith Input parameters: 333b4319ba4SBarry Smith . pc - preconditioner context 334b4319ba4SBarry Smith . array_N - [when in SCATTER_FORWARD mode] Array to be scattered into the vector 335b4319ba4SBarry Smith . v_B - [when in SCATTER_REVERSE mode] Vector to be scattered into the array 336b4319ba4SBarry Smith 337b4319ba4SBarry Smith Output parameter: 338b4319ba4SBarry Smith . array_N - [when in SCATTER_REVERSE mode] Array to receive the scattered vector 339b4319ba4SBarry Smith . v_B - [when in SCATTER_FORWARD mode] Vector to receive the scattered array 340b4319ba4SBarry Smith 341b4319ba4SBarry Smith Notes: 342b4319ba4SBarry Smith The entries in the array that do not correspond to interface nodes remain unaltered. 343b4319ba4SBarry Smith */ 344b4319ba4SBarry Smith #undef __FUNCT__ 345b4319ba4SBarry Smith #define __FUNCT__ "PCISScatterArrayNToVecB" 346*6849ba73SBarry Smith PetscErrorCode PCISScatterArrayNToVecB (PetscScalar *array_N, Vec v_B, InsertMode imode, ScatterMode smode, PC pc) 347b4319ba4SBarry Smith { 348*6849ba73SBarry Smith int i, *idex; 349*6849ba73SBarry Smith PetscErrorCode ierr; 350b4319ba4SBarry Smith PetscScalar *array_B; 351b4319ba4SBarry Smith PC_IS *pcis = (PC_IS*)(pc->data); 352b4319ba4SBarry Smith 353b4319ba4SBarry Smith PetscFunctionBegin; 354b4319ba4SBarry Smith 355b4319ba4SBarry Smith ierr = VecGetArray(v_B,&array_B);CHKERRQ(ierr); 356b4319ba4SBarry Smith ierr = ISGetIndices(pcis->is_B_local,&idex);CHKERRQ(ierr); 357b4319ba4SBarry Smith 358b4319ba4SBarry Smith if (smode == SCATTER_FORWARD) { 359b4319ba4SBarry Smith if (imode == INSERT_VALUES) { 360b4319ba4SBarry Smith for (i=0; i<pcis->n_B; i++) { array_B[i] = array_N[idex[i]]; } 361b4319ba4SBarry Smith } else { /* ADD_VALUES */ 362b4319ba4SBarry Smith for (i=0; i<pcis->n_B; i++) { array_B[i] += array_N[idex[i]]; } 363b4319ba4SBarry Smith } 364b4319ba4SBarry Smith } else { /* SCATTER_REVERSE */ 365b4319ba4SBarry Smith if (imode == INSERT_VALUES) { 366b4319ba4SBarry Smith for (i=0; i<pcis->n_B; i++) { array_N[idex[i]] = array_B[i]; } 367b4319ba4SBarry Smith } else { /* ADD_VALUES */ 368b4319ba4SBarry Smith for (i=0; i<pcis->n_B; i++) { array_N[idex[i]] += array_B[i]; } 369b4319ba4SBarry Smith } 370b4319ba4SBarry Smith } 371b4319ba4SBarry Smith 372b4319ba4SBarry Smith ierr = ISRestoreIndices(pcis->is_B_local,&idex);CHKERRQ(ierr); 373b4319ba4SBarry Smith ierr = VecRestoreArray(v_B,&array_B);CHKERRQ(ierr); 374b4319ba4SBarry Smith 375b4319ba4SBarry Smith PetscFunctionReturn(0); 376b4319ba4SBarry Smith } 377b4319ba4SBarry Smith 378b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */ 379b4319ba4SBarry Smith /* 380b4319ba4SBarry Smith PCISApplyInvSchur - Solves the Neumann problem related to applying the inverse of the Schur complement. 381b4319ba4SBarry Smith More precisely, solves the problem: 382b4319ba4SBarry Smith [ A_II A_IB ] [ . ] [ 0 ] 383b4319ba4SBarry Smith [ ] [ ] = [ ] 384b4319ba4SBarry Smith [ A_BI A_BB ] [ x ] [ b ] 385b4319ba4SBarry Smith 386b4319ba4SBarry Smith Input parameters: 387b4319ba4SBarry Smith . pc - preconditioner context 388b4319ba4SBarry Smith . b - vector of local interface nodes (including ghosts) 389b4319ba4SBarry Smith 390b4319ba4SBarry Smith Output parameters: 391b4319ba4SBarry Smith . x - vector of local interface nodes (including ghosts); returns the application of the inverse of the Schur 392b4319ba4SBarry Smith complement to b 393b4319ba4SBarry Smith . vec1_N - vector of local nodes (interior and interface, including ghosts); returns garbage (used as work space) 394b4319ba4SBarry Smith . vec2_N - vector of local nodes (interior and interface, including ghosts); returns garbage (used as work space) 395b4319ba4SBarry Smith 396b4319ba4SBarry Smith */ 397b4319ba4SBarry Smith #undef __FUNCT__ 398b4319ba4SBarry Smith #define __FUNCT__ "PCISApplyInvSchur" 399*6849ba73SBarry Smith PetscErrorCode PCISApplyInvSchur (PC pc, Vec b, Vec x, Vec vec1_N, Vec vec2_N) 400b4319ba4SBarry Smith { 401dfbe8321SBarry Smith PetscErrorCode ierr; 402b4319ba4SBarry Smith PC_IS *pcis = (PC_IS*)(pc->data); 403b4319ba4SBarry Smith PetscScalar zero = 0.0; 404b4319ba4SBarry Smith 405b4319ba4SBarry Smith PetscFunctionBegin; 406b4319ba4SBarry Smith 407b4319ba4SBarry Smith /* 408b4319ba4SBarry Smith Neumann solvers. 409b4319ba4SBarry Smith Applying the inverse of the local Schur complement, i.e, solving a Neumann 410b4319ba4SBarry Smith Problem with zero at the interior nodes of the RHS and extracting the interface 411b4319ba4SBarry Smith part of the solution. inverse Schur complement is applied to b and the result 412b4319ba4SBarry Smith is stored in x. 413b4319ba4SBarry Smith */ 414b4319ba4SBarry Smith /* Setting the RHS vec1_N */ 415b4319ba4SBarry Smith ierr = VecSet(&zero,vec1_N);CHKERRQ(ierr); 416b4319ba4SBarry Smith ierr = VecScatterBegin(b,vec1_N,INSERT_VALUES,SCATTER_REVERSE,pcis->N_to_B);CHKERRQ(ierr); 417b4319ba4SBarry Smith ierr = VecScatterEnd (b,vec1_N,INSERT_VALUES,SCATTER_REVERSE,pcis->N_to_B);CHKERRQ(ierr); 418b4319ba4SBarry Smith /* Checking for consistency of the RHS */ 419b4319ba4SBarry Smith { 420b4319ba4SBarry Smith PetscTruth flg; 421b4319ba4SBarry Smith ierr = PetscOptionsHasName(PETSC_NULL,"-pc_is_check_consistency",&flg);CHKERRQ(ierr); 422b4319ba4SBarry Smith if (flg) { 423b4319ba4SBarry Smith PetscScalar average; 424b4319ba4SBarry Smith ierr = VecSum(vec1_N,&average);CHKERRQ(ierr); 425b4319ba4SBarry Smith average = average / ((PetscReal)pcis->n); 426b4319ba4SBarry Smith if (pcis->pure_neumann) { 427b4319ba4SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(PETSC_VIEWER_STDOUT_(pc->comm),"Subdomain %04d is floating. Average = % 1.14e\n", 428b4319ba4SBarry Smith PetscGlobalRank,PetscAbsScalar(average));CHKERRQ(ierr); 429b4319ba4SBarry Smith } else { 430b4319ba4SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(PETSC_VIEWER_STDOUT_(pc->comm),"Subdomain %04d is fixed. Average = % 1.14e\n", 431b4319ba4SBarry Smith PetscGlobalRank,PetscAbsScalar(average));CHKERRQ(ierr); 432b4319ba4SBarry Smith } 433b4319ba4SBarry Smith PetscViewerFlush(PETSC_VIEWER_STDOUT_(pc->comm)); 434b4319ba4SBarry Smith } 435b4319ba4SBarry Smith } 436b4319ba4SBarry Smith /* Solving the system for vec2_N */ 43723ce1328SBarry Smith ierr = KSPSolve(pcis->ksp_N,vec1_N,vec2_N);CHKERRQ(ierr); 438b4319ba4SBarry Smith /* Extracting the local interface vector out of the solution */ 439b4319ba4SBarry Smith ierr = VecScatterBegin(vec2_N,x,INSERT_VALUES,SCATTER_FORWARD,pcis->N_to_B);CHKERRQ(ierr); 440b4319ba4SBarry Smith ierr = VecScatterEnd (vec2_N,x,INSERT_VALUES,SCATTER_FORWARD,pcis->N_to_B);CHKERRQ(ierr); 441b4319ba4SBarry Smith 442b4319ba4SBarry Smith PetscFunctionReturn(0); 443b4319ba4SBarry Smith } 444b4319ba4SBarry Smith 445b4319ba4SBarry Smith 446b4319ba4SBarry Smith 447b4319ba4SBarry Smith 448b4319ba4SBarry Smith 449b4319ba4SBarry Smith 450b4319ba4SBarry Smith 451b4319ba4SBarry Smith 452b4319ba4SBarry Smith 453