xref: /petsc/src/ksp/pc/impls/is/pcis.c (revision c88783f47300897909cd2899b1ba8160dbb2d455)
1dba47a55SKris Buschelman #define PETSCKSP_DLL
223ce1328SBarry Smith 
37c4f633dSBarry Smith #include "../src/ksp/pc/impls/is/pcis.h"
4b4319ba4SBarry Smith 
5b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */
6b4319ba4SBarry Smith /*
7b4319ba4SBarry Smith    PCISSetUp -
8b4319ba4SBarry Smith */
9b4319ba4SBarry Smith #undef __FUNCT__
10b4319ba4SBarry Smith #define __FUNCT__ "PCISSetUp"
11dba47a55SKris Buschelman PetscErrorCode PETSCKSP_DLLEXPORT PCISSetUp(PC pc)
12b4319ba4SBarry Smith {
13b4319ba4SBarry Smith   PC_IS           *pcis = (PC_IS*)(pc->data);
14b4319ba4SBarry Smith   Mat_IS          *matis = (Mat_IS*)pc->mat->data;
1513f74950SBarry Smith   PetscInt        i;
166849ba73SBarry Smith   PetscErrorCode  ierr;
17b4319ba4SBarry Smith   PetscTruth      flg;
18b4319ba4SBarry Smith 
19b4319ba4SBarry Smith   PetscFunctionBegin;
20b4319ba4SBarry Smith   ierr = PetscTypeCompare((PetscObject)pc->mat,MATIS,&flg);CHKERRQ(ierr);
21b4319ba4SBarry Smith   if (!flg){
221302d50aSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Preconditioner type of Neumann Neumman requires matrix of type MATIS");
23b4319ba4SBarry Smith   }
24b4319ba4SBarry Smith 
25b4319ba4SBarry Smith   pcis->pure_neumann = matis->pure_neumann;
26b4319ba4SBarry Smith 
27b4319ba4SBarry Smith   /*
28b4319ba4SBarry Smith     Creating the local vector vec1_N, containing the inverse of the number
29b4319ba4SBarry Smith     of subdomains to which each local node (either owned or ghost)
30b4319ba4SBarry Smith     pertains. To accomplish that, we scatter local vectors of 1's to
31b4319ba4SBarry Smith     a global vector (adding the values); scatter the result back to
32b4319ba4SBarry Smith     local vectors and finally invert the result.
33b4319ba4SBarry Smith   */
34b4319ba4SBarry Smith   {
35b4319ba4SBarry Smith     Vec    counter;
36b4319ba4SBarry Smith     ierr = VecDuplicate(matis->x,&pcis->vec1_N);CHKERRQ(ierr);
3723ce1328SBarry Smith     ierr = MatGetVecs(pc->pmat,&counter,0);CHKERRQ(ierr); /* temporary auxiliar vector */
38efb30889SBarry Smith     ierr = VecSet(counter,0.0);CHKERRQ(ierr);
39efb30889SBarry Smith     ierr = VecSet(pcis->vec1_N,1.0);CHKERRQ(ierr);
40ca9f406cSSatish Balay     ierr = VecScatterBegin(matis->ctx,pcis->vec1_N,counter,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
41ca9f406cSSatish Balay     ierr = VecScatterEnd  (matis->ctx,pcis->vec1_N,counter,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
42ca9f406cSSatish Balay     ierr = VecScatterBegin(matis->ctx,counter,pcis->vec1_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
43ca9f406cSSatish Balay     ierr = VecScatterEnd  (matis->ctx,counter,pcis->vec1_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
44b4319ba4SBarry Smith     ierr = VecDestroy(counter);CHKERRQ(ierr);
45b4319ba4SBarry Smith   }
46b4319ba4SBarry Smith   /*
47b4319ba4SBarry Smith     Creating local and global index sets for interior and
48b4319ba4SBarry Smith     inteface nodes. Notice that interior nodes have D[i]==1.0.
49b4319ba4SBarry Smith   */
50b4319ba4SBarry Smith   {
5113f74950SBarry Smith     PetscInt     n_I;
5213f74950SBarry Smith     PetscInt    *idx_I_local,*idx_B_local,*idx_I_global,*idx_B_global;
53b4319ba4SBarry Smith     PetscScalar *array;
54b4319ba4SBarry Smith     /* Identifying interior and interface nodes, in local numbering */
55b4319ba4SBarry Smith     ierr = VecGetSize(pcis->vec1_N,&pcis->n);CHKERRQ(ierr);
56b4319ba4SBarry Smith     ierr = VecGetArray(pcis->vec1_N,&array);CHKERRQ(ierr);
5713f74950SBarry Smith     ierr = PetscMalloc(pcis->n*sizeof(PetscInt),&idx_I_local);CHKERRQ(ierr);
5813f74950SBarry Smith     ierr = PetscMalloc(pcis->n*sizeof(PetscInt),&idx_B_local);CHKERRQ(ierr);
59b4319ba4SBarry Smith     for (i=0, pcis->n_B=0, n_I=0; i<pcis->n; i++) {
60b4319ba4SBarry Smith       if (array[i] == 1.0) { idx_I_local[n_I]       = i; n_I++;       }
61b4319ba4SBarry Smith       else                 { idx_B_local[pcis->n_B] = i; pcis->n_B++; }
62b4319ba4SBarry Smith     }
63b4319ba4SBarry Smith     /* Getting the global numbering */
64b4319ba4SBarry Smith     idx_B_global = idx_I_local + n_I; /* Just avoiding allocating extra memory, since we have vacant space */
65b4319ba4SBarry Smith     idx_I_global = idx_B_local + pcis->n_B;
66b4319ba4SBarry Smith     ierr = ISLocalToGlobalMappingApply(matis->mapping,pcis->n_B,idx_B_local,idx_B_global);CHKERRQ(ierr);
67b4319ba4SBarry Smith     ierr = ISLocalToGlobalMappingApply(matis->mapping,n_I,      idx_I_local,idx_I_global);CHKERRQ(ierr);
68b4319ba4SBarry Smith     /* Creating the index sets. */
69b4319ba4SBarry Smith     ierr = ISCreateGeneral(MPI_COMM_SELF,pcis->n_B,idx_B_local, &pcis->is_B_local);CHKERRQ(ierr);
70b4319ba4SBarry Smith     ierr = ISCreateGeneral(MPI_COMM_SELF,pcis->n_B,idx_B_global,&pcis->is_B_global);CHKERRQ(ierr);
71b4319ba4SBarry Smith     ierr = ISCreateGeneral(MPI_COMM_SELF,n_I      ,idx_I_local, &pcis->is_I_local);CHKERRQ(ierr);
72b4319ba4SBarry Smith     ierr = ISCreateGeneral(MPI_COMM_SELF,n_I      ,idx_I_global,&pcis->is_I_global);CHKERRQ(ierr);
73b4319ba4SBarry Smith     /* Freeing memory and restoring arrays */
74b4319ba4SBarry Smith     ierr = PetscFree(idx_B_local);CHKERRQ(ierr);
75b4319ba4SBarry Smith     ierr = PetscFree(idx_I_local);CHKERRQ(ierr);
76b4319ba4SBarry Smith     ierr = VecRestoreArray(pcis->vec1_N,&array);CHKERRQ(ierr);
77b4319ba4SBarry Smith   }
78b4319ba4SBarry Smith 
79b4319ba4SBarry Smith   /*
80b4319ba4SBarry Smith     Extracting the blocks A_II, A_BI, A_IB and A_BB from A. If the numbering
81b4319ba4SBarry Smith     is such that interior nodes come first than the interface ones, we have
82b4319ba4SBarry Smith 
83b4319ba4SBarry Smith     [           |      ]
84b4319ba4SBarry Smith     [    A_II   | A_IB ]
85b4319ba4SBarry Smith     A = [           |      ]
86b4319ba4SBarry Smith     [-----------+------]
87b4319ba4SBarry Smith     [    A_BI   | A_BB ]
88b4319ba4SBarry Smith   */
89b4319ba4SBarry Smith 
904aa3045dSJed Brown   ierr = MatGetSubMatrix(matis->A,pcis->is_I_local,pcis->is_I_local,MAT_INITIAL_MATRIX,&pcis->A_II);CHKERRQ(ierr);
914aa3045dSJed Brown   ierr = MatGetSubMatrix(matis->A,pcis->is_I_local,pcis->is_B_local,MAT_INITIAL_MATRIX,&pcis->A_IB);CHKERRQ(ierr);
924aa3045dSJed Brown   ierr = MatGetSubMatrix(matis->A,pcis->is_B_local,pcis->is_I_local,MAT_INITIAL_MATRIX,&pcis->A_BI);CHKERRQ(ierr);
934aa3045dSJed Brown   ierr = MatGetSubMatrix(matis->A,pcis->is_B_local,pcis->is_B_local,MAT_INITIAL_MATRIX,&pcis->A_BB);CHKERRQ(ierr);
94b4319ba4SBarry Smith 
95b4319ba4SBarry Smith   /*
96b4319ba4SBarry Smith     Creating work vectors and arrays
97b4319ba4SBarry Smith   */
98b4319ba4SBarry Smith   /* pcis->vec1_N has already been created */
99b4319ba4SBarry Smith   ierr = VecDuplicate(pcis->vec1_N,&pcis->vec2_N);CHKERRQ(ierr);
100b4319ba4SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,pcis->n-pcis->n_B,&pcis->vec1_D);CHKERRQ(ierr);
101b4319ba4SBarry Smith   ierr = VecDuplicate(pcis->vec1_D,&pcis->vec2_D);CHKERRQ(ierr);
102b4319ba4SBarry Smith   ierr = VecDuplicate(pcis->vec1_D,&pcis->vec3_D);CHKERRQ(ierr);
103b4319ba4SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,pcis->n_B,&pcis->vec1_B);CHKERRQ(ierr);
104b4319ba4SBarry Smith   ierr = VecDuplicate(pcis->vec1_B,&pcis->vec2_B);CHKERRQ(ierr);
105b4319ba4SBarry Smith   ierr = VecDuplicate(pcis->vec1_B,&pcis->vec3_B);CHKERRQ(ierr);
10623ce1328SBarry Smith   ierr = MatGetVecs(pc->pmat,&pcis->vec1_global,0);CHKERRQ(ierr);
107b4319ba4SBarry Smith   ierr = PetscMalloc((pcis->n)*sizeof(PetscScalar),&pcis->work_N);CHKERRQ(ierr);
108b4319ba4SBarry Smith 
109b4319ba4SBarry Smith   /* Creating the scatter contexts */
11023ce1328SBarry Smith   ierr = VecScatterCreate(pcis->vec1_global,pcis->is_I_global,pcis->vec1_D,(IS)0,&pcis->global_to_D);CHKERRQ(ierr);
111b4319ba4SBarry Smith   ierr = VecScatterCreate(pcis->vec1_N,pcis->is_B_local,pcis->vec1_B,(IS)0,&pcis->N_to_B);CHKERRQ(ierr);
11223ce1328SBarry Smith   ierr = VecScatterCreate(pcis->vec1_global,pcis->is_B_global,pcis->vec1_B,(IS)0,&pcis->global_to_B);CHKERRQ(ierr);
113b4319ba4SBarry Smith 
114b4319ba4SBarry Smith   /* Creating scaling "matrix" D, from information in vec1_N */
115b4319ba4SBarry Smith   ierr = VecDuplicate(pcis->vec1_B,&pcis->D);CHKERRQ(ierr);
116ca9f406cSSatish Balay   ierr = VecScatterBegin(pcis->N_to_B,pcis->vec1_N,pcis->D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
117ca9f406cSSatish Balay   ierr = VecScatterEnd  (pcis->N_to_B,pcis->vec1_N,pcis->D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
118b4319ba4SBarry Smith   ierr = VecReciprocal(pcis->D);CHKERRQ(ierr);
119b4319ba4SBarry Smith 
120b4319ba4SBarry Smith   /* See historical note 01, at the bottom of this file. */
121b4319ba4SBarry Smith 
122b4319ba4SBarry Smith   /*
123b4319ba4SBarry Smith     Creating the KSP contexts for the local Dirichlet and Neumann problems.
124b4319ba4SBarry Smith   */
125b4319ba4SBarry Smith   {
126b4319ba4SBarry Smith     PC  pc_ctx;
127b4319ba4SBarry Smith     /* Dirichlet */
128b4319ba4SBarry Smith     ierr = KSPCreate(PETSC_COMM_SELF,&pcis->ksp_D);CHKERRQ(ierr);
1291cee3971SBarry Smith     ierr = PetscObjectIncrementTabLevel((PetscObject)pcis->ksp_D,(PetscObject)pc,1);CHKERRQ(ierr);
130b4319ba4SBarry Smith     ierr = KSPSetOperators(pcis->ksp_D,pcis->A_II,pcis->A_II,SAME_PRECONDITIONER);CHKERRQ(ierr);
131b4319ba4SBarry Smith     ierr = KSPSetOptionsPrefix(pcis->ksp_D,"is_localD_");CHKERRQ(ierr);
132b4319ba4SBarry Smith     ierr = KSPGetPC(pcis->ksp_D,&pc_ctx);CHKERRQ(ierr);
133b4319ba4SBarry Smith     ierr = PCSetType(pc_ctx,PCLU);CHKERRQ(ierr);
134b4319ba4SBarry Smith     ierr = KSPSetType(pcis->ksp_D,KSPPREONLY);CHKERRQ(ierr);
135b4319ba4SBarry Smith     ierr = KSPSetFromOptions(pcis->ksp_D);CHKERRQ(ierr);
136b4319ba4SBarry Smith     /* the vectors in the following line are dummy arguments, just telling the KSP the vector size. Values are not used */
137b4319ba4SBarry Smith     ierr = KSPSetUp(pcis->ksp_D);CHKERRQ(ierr);
138b4319ba4SBarry Smith     /* Neumann */
139b4319ba4SBarry Smith     ierr = KSPCreate(PETSC_COMM_SELF,&pcis->ksp_N);CHKERRQ(ierr);
1401cee3971SBarry Smith     ierr = PetscObjectIncrementTabLevel((PetscObject)pcis->ksp_N,(PetscObject)pc,1);CHKERRQ(ierr);
141b4319ba4SBarry Smith     ierr = KSPSetOperators(pcis->ksp_N,matis->A,matis->A,SAME_PRECONDITIONER);CHKERRQ(ierr);
142b4319ba4SBarry Smith     ierr = KSPSetOptionsPrefix(pcis->ksp_N,"is_localN_");CHKERRQ(ierr);
143b4319ba4SBarry Smith     ierr = KSPGetPC(pcis->ksp_N,&pc_ctx);CHKERRQ(ierr);
144b4319ba4SBarry Smith     ierr = PCSetType(pc_ctx,PCLU);CHKERRQ(ierr);
145b4319ba4SBarry Smith     ierr = KSPSetType(pcis->ksp_N,KSPPREONLY);CHKERRQ(ierr);
146b4319ba4SBarry Smith     ierr = KSPSetFromOptions(pcis->ksp_N);CHKERRQ(ierr);
147b4319ba4SBarry Smith     {
14890d69ab7SBarry Smith       PetscTruth damp_fixed = PETSC_FALSE,
14990d69ab7SBarry Smith                  remove_nullspace_fixed = PETSC_FALSE,
15090d69ab7SBarry Smith                  set_damping_factor_floating = PETSC_FALSE,
15190d69ab7SBarry Smith                  not_damp_floating = PETSC_FALSE,
15290d69ab7SBarry Smith                  not_remove_nullspace_floating = PETSC_FALSE;
153b4319ba4SBarry Smith       PetscReal  fixed_factor,
154b4319ba4SBarry Smith                  floating_factor;
155b4319ba4SBarry Smith 
1567adad957SLisandro Dalcin       ierr = PetscOptionsGetReal(((PetscObject)pc_ctx)->prefix,"-pc_is_damp_fixed",&fixed_factor,&damp_fixed);CHKERRQ(ierr);
157b4319ba4SBarry Smith       if (!damp_fixed) { fixed_factor = 0.0; }
15890d69ab7SBarry Smith       ierr = PetscOptionsGetTruth(((PetscObject)pc_ctx)->prefix,"-pc_is_damp_fixed",&damp_fixed,PETSC_NULL);CHKERRQ(ierr);
159b4319ba4SBarry Smith 
16090d69ab7SBarry Smith       ierr = PetscOptionsGetTruth(((PetscObject)pc_ctx)->prefix,"-pc_is_remove_nullspace_fixed",&remove_nullspace_fixed,PETSC_NULL);CHKERRQ(ierr);
161b4319ba4SBarry Smith 
1627adad957SLisandro Dalcin       ierr = PetscOptionsGetReal(((PetscObject)pc_ctx)->prefix,"-pc_is_set_damping_factor_floating",
163b4319ba4SBarry Smith 			      &floating_factor,&set_damping_factor_floating);CHKERRQ(ierr);
164b4319ba4SBarry Smith       if (!set_damping_factor_floating) { floating_factor = 0.0; }
16590d69ab7SBarry Smith       ierr = PetscOptionsGetTruth(((PetscObject)pc_ctx)->prefix,"-pc_is_set_damping_factor_floating",&set_damping_factor_floating,PETSC_NULL);CHKERRQ(ierr);
166b4319ba4SBarry Smith       if (!set_damping_factor_floating) { floating_factor = 1.e-12; }
167b4319ba4SBarry Smith 
16890d69ab7SBarry Smith       ierr = PetscOptionsGetTruth(((PetscObject)pc_ctx)->prefix,"-pc_is_not_damp_floating",&not_damp_floating,PETSC_NULL);CHKERRQ(ierr);
169b4319ba4SBarry Smith 
17090d69ab7SBarry Smith       ierr = PetscOptionsGetTruth(((PetscObject)pc_ctx)->prefix,"-pc_is_not_remove_nullspace_floating",&not_remove_nullspace_floating,PETSC_NULL);CHKERRQ(ierr);
171b4319ba4SBarry Smith 
172b4319ba4SBarry Smith       if (pcis->pure_neumann) {  /* floating subdomain */
173b4319ba4SBarry Smith 	if (!(not_damp_floating)) {
174*c88783f4SHong Zhang           ierr = PCFactorSetShiftType(pc_ctx,MAT_SHIFT_NONZERO);CHKERRQ(ierr);
175*c88783f4SHong Zhang           ierr = PCFactorSetShiftAmount(pc_ctx,floating_factor);CHKERRQ(ierr);
176b4319ba4SBarry Smith 	}
177b4319ba4SBarry Smith 	if (!(not_remove_nullspace_floating)){
178b4319ba4SBarry Smith 	  MatNullSpace nullsp;
179ee512c37SSatish Balay 	  ierr = MatNullSpaceCreate(PETSC_COMM_SELF,PETSC_TRUE,0,PETSC_NULL,&nullsp);CHKERRQ(ierr);
180d8fd42c4SBarry Smith 	  ierr = KSPSetNullSpace(pcis->ksp_N,nullsp);CHKERRQ(ierr);
181b4319ba4SBarry Smith 	  ierr = MatNullSpaceDestroy(nullsp);CHKERRQ(ierr);
182b4319ba4SBarry Smith 	}
183b4319ba4SBarry Smith       } else {  /* fixed subdomain */
184b4319ba4SBarry Smith 	if (damp_fixed) {
185*c88783f4SHong Zhang           ierr = PCFactorSetShiftType(pc_ctx,MAT_SHIFT_NONZERO);CHKERRQ(ierr);
186*c88783f4SHong Zhang           ierr = PCFactorSetShiftAmount(pc_ctx,floating_factor);CHKERRQ(ierr);
187b4319ba4SBarry Smith 	}
188b4319ba4SBarry Smith 	if (remove_nullspace_fixed) {
189b4319ba4SBarry Smith 	  MatNullSpace nullsp;
190ee512c37SSatish Balay 	  ierr = MatNullSpaceCreate(PETSC_COMM_SELF,PETSC_TRUE,0,PETSC_NULL,&nullsp);CHKERRQ(ierr);
191d8fd42c4SBarry Smith 	  ierr = KSPSetNullSpace(pcis->ksp_N,nullsp);CHKERRQ(ierr);
192b4319ba4SBarry Smith 	  ierr = MatNullSpaceDestroy(nullsp);CHKERRQ(ierr);
193b4319ba4SBarry Smith 	}
194b4319ba4SBarry Smith       }
195b4319ba4SBarry Smith     }
196b4319ba4SBarry Smith     /* the vectors in the following line are dummy arguments, just telling the KSP the vector size. Values are not used */
197b4319ba4SBarry Smith     ierr = KSPSetUp(pcis->ksp_N);CHKERRQ(ierr);
198b4319ba4SBarry Smith   }
199b4319ba4SBarry Smith 
2007c334f02SBarry Smith   ierr = ISLocalToGlobalMappingGetInfo(((Mat_IS*)(pc->mat->data))->mapping,&(pcis->n_neigh),&(pcis->neigh),&(pcis->n_shared),&(pcis->shared));CHKERRQ(ierr);
201b4319ba4SBarry Smith   pcis->ISLocalToGlobalMappingGetInfoWasCalled = PETSC_TRUE;
202b4319ba4SBarry Smith   PetscFunctionReturn(0);
203b4319ba4SBarry Smith }
204b4319ba4SBarry Smith 
205b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */
206b4319ba4SBarry Smith /*
207b4319ba4SBarry Smith    PCISDestroy -
208b4319ba4SBarry Smith */
209b4319ba4SBarry Smith #undef __FUNCT__
210b4319ba4SBarry Smith #define __FUNCT__ "PCISDestroy"
211dba47a55SKris Buschelman PetscErrorCode PETSCKSP_DLLEXPORT PCISDestroy(PC pc)
212b4319ba4SBarry Smith {
213b4319ba4SBarry Smith   PC_IS          *pcis = (PC_IS*)(pc->data);
214dfbe8321SBarry Smith   PetscErrorCode ierr;
215b4319ba4SBarry Smith 
216b4319ba4SBarry Smith   PetscFunctionBegin;
217b4319ba4SBarry Smith   if (pcis->is_B_local)  {ierr = ISDestroy(pcis->is_B_local);CHKERRQ(ierr);}
218b4319ba4SBarry Smith   if (pcis->is_I_local)  {ierr = ISDestroy(pcis->is_I_local);CHKERRQ(ierr);}
219b4319ba4SBarry Smith   if (pcis->is_B_global) {ierr = ISDestroy(pcis->is_B_global);CHKERRQ(ierr);}
220b4319ba4SBarry Smith   if (pcis->is_I_global) {ierr = ISDestroy(pcis->is_I_global);CHKERRQ(ierr);}
221b4319ba4SBarry Smith   if (pcis->A_II)        {ierr = MatDestroy(pcis->A_II);CHKERRQ(ierr);}
222b4319ba4SBarry Smith   if (pcis->A_IB)        {ierr = MatDestroy(pcis->A_IB);CHKERRQ(ierr);}
223b4319ba4SBarry Smith   if (pcis->A_BI)        {ierr = MatDestroy(pcis->A_BI);CHKERRQ(ierr);}
224b4319ba4SBarry Smith   if (pcis->A_BB)        {ierr = MatDestroy(pcis->A_BB);CHKERRQ(ierr);}
225b4319ba4SBarry Smith   if (pcis->D)           {ierr = VecDestroy(pcis->D);CHKERRQ(ierr);}
226b4319ba4SBarry Smith   if (pcis->ksp_N)      {ierr = KSPDestroy(pcis->ksp_N);CHKERRQ(ierr);}
227b4319ba4SBarry Smith   if (pcis->ksp_D)      {ierr = KSPDestroy(pcis->ksp_D);CHKERRQ(ierr);}
228b4319ba4SBarry Smith   if (pcis->vec1_N)      {ierr = VecDestroy(pcis->vec1_N);CHKERRQ(ierr);}
229b4319ba4SBarry Smith   if (pcis->vec2_N)      {ierr = VecDestroy(pcis->vec2_N);CHKERRQ(ierr);}
230b4319ba4SBarry Smith   if (pcis->vec1_D)      {ierr = VecDestroy(pcis->vec1_D);CHKERRQ(ierr);}
231b4319ba4SBarry Smith   if (pcis->vec2_D)      {ierr = VecDestroy(pcis->vec2_D);CHKERRQ(ierr);}
232b4319ba4SBarry Smith   if (pcis->vec3_D)      {ierr = VecDestroy(pcis->vec3_D);CHKERRQ(ierr);}
233b4319ba4SBarry Smith   if (pcis->vec1_B)      {ierr = VecDestroy(pcis->vec1_B);CHKERRQ(ierr);}
234b4319ba4SBarry Smith   if (pcis->vec2_B)      {ierr = VecDestroy(pcis->vec2_B);CHKERRQ(ierr);}
235b4319ba4SBarry Smith   if (pcis->vec3_B)      {ierr = VecDestroy(pcis->vec3_B);CHKERRQ(ierr);}
236b4319ba4SBarry Smith   if (pcis->vec1_global) {ierr = VecDestroy(pcis->vec1_global);CHKERRQ(ierr);}
237b4319ba4SBarry Smith   if (pcis->global_to_D) {ierr = VecScatterDestroy(pcis->global_to_D);CHKERRQ(ierr);}
238b4319ba4SBarry Smith   if (pcis->N_to_B)      {ierr = VecScatterDestroy(pcis->N_to_B);CHKERRQ(ierr);}
239b4319ba4SBarry Smith   if (pcis->global_to_B) {ierr = VecScatterDestroy(pcis->global_to_B);CHKERRQ(ierr);}
24005b42c5fSBarry Smith   ierr = PetscFree(pcis->work_N);CHKERRQ(ierr);
241b4319ba4SBarry Smith   if (pcis->ISLocalToGlobalMappingGetInfoWasCalled) {
242b4319ba4SBarry Smith     ierr = ISLocalToGlobalMappingRestoreInfo((ISLocalToGlobalMapping)0,&(pcis->n_neigh),&(pcis->neigh),&(pcis->n_shared),&(pcis->shared));CHKERRQ(ierr);
243b4319ba4SBarry Smith   }
244b4319ba4SBarry Smith   PetscFunctionReturn(0);
245b4319ba4SBarry Smith }
246b4319ba4SBarry Smith 
247b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */
248b4319ba4SBarry Smith /*
249b4319ba4SBarry Smith    PCISCreate -
250b4319ba4SBarry Smith */
251b4319ba4SBarry Smith #undef __FUNCT__
252b4319ba4SBarry Smith #define __FUNCT__ "PCISCreate"
253dba47a55SKris Buschelman PetscErrorCode PETSCKSP_DLLEXPORT PCISCreate(PC pc)
254b4319ba4SBarry Smith {
255b4319ba4SBarry Smith   PC_IS *pcis = (PC_IS*)(pc->data);
256b4319ba4SBarry Smith 
257b4319ba4SBarry Smith   PetscFunctionBegin;
258b4319ba4SBarry Smith   pcis->is_B_local  = 0;
259b4319ba4SBarry Smith   pcis->is_I_local  = 0;
260b4319ba4SBarry Smith   pcis->is_B_global = 0;
261b4319ba4SBarry Smith   pcis->is_I_global = 0;
262b4319ba4SBarry Smith   pcis->A_II        = 0;
263b4319ba4SBarry Smith   pcis->A_IB        = 0;
264b4319ba4SBarry Smith   pcis->A_BI        = 0;
265b4319ba4SBarry Smith   pcis->A_BB        = 0;
266b4319ba4SBarry Smith   pcis->D           = 0;
267b4319ba4SBarry Smith   pcis->ksp_N      = 0;
268b4319ba4SBarry Smith   pcis->ksp_D      = 0;
269b4319ba4SBarry Smith   pcis->vec1_N      = 0;
270b4319ba4SBarry Smith   pcis->vec2_N      = 0;
271b4319ba4SBarry Smith   pcis->vec1_D      = 0;
272b4319ba4SBarry Smith   pcis->vec2_D      = 0;
273b4319ba4SBarry Smith   pcis->vec3_D      = 0;
274b4319ba4SBarry Smith   pcis->vec1_B      = 0;
275b4319ba4SBarry Smith   pcis->vec2_B      = 0;
276b4319ba4SBarry Smith   pcis->vec3_B      = 0;
277b4319ba4SBarry Smith   pcis->vec1_global = 0;
278b4319ba4SBarry Smith   pcis->work_N      = 0;
279b4319ba4SBarry Smith   pcis->global_to_D = 0;
280b4319ba4SBarry Smith   pcis->N_to_B      = 0;
281b4319ba4SBarry Smith   pcis->global_to_B = 0;
282b4319ba4SBarry Smith   pcis->ISLocalToGlobalMappingGetInfoWasCalled = PETSC_FALSE;
283b4319ba4SBarry Smith   PetscFunctionReturn(0);
284b4319ba4SBarry Smith }
285b4319ba4SBarry Smith 
286b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */
287b4319ba4SBarry Smith /*
288b4319ba4SBarry Smith    PCISApplySchur -
289b4319ba4SBarry Smith 
290b4319ba4SBarry Smith    Input parameters:
291b4319ba4SBarry Smith .  pc - preconditioner context
292b4319ba4SBarry Smith .  v - vector to which the Schur complement is to be applied (it is NOT modified inside this function, UNLESS vec2_B is null)
293b4319ba4SBarry Smith 
294b4319ba4SBarry Smith    Output parameters:
295b4319ba4SBarry Smith .  vec1_B - result of Schur complement applied to chunk
296b4319ba4SBarry Smith .  vec2_B - garbage (used as work space), or null (and v is used as workspace)
297b4319ba4SBarry Smith .  vec1_D - garbage (used as work space)
298b4319ba4SBarry Smith .  vec2_D - garbage (used as work space)
299b4319ba4SBarry Smith 
300b4319ba4SBarry Smith */
301b4319ba4SBarry Smith #undef __FUNCT__
302b4319ba4SBarry Smith #define __FUNCT__ "PCIterSuApplySchur"
303dba47a55SKris Buschelman PetscErrorCode PETSCKSP_DLLEXPORT PCISApplySchur(PC pc, Vec v, Vec vec1_B, Vec vec2_B, Vec vec1_D, Vec vec2_D)
304b4319ba4SBarry Smith {
305dfbe8321SBarry Smith   PetscErrorCode ierr;
306b4319ba4SBarry Smith   PC_IS          *pcis = (PC_IS*)(pc->data);
307b4319ba4SBarry Smith 
308b4319ba4SBarry Smith   PetscFunctionBegin;
30913f74950SBarry Smith   if (!vec2_B) { vec2_B = v; }
310b4319ba4SBarry Smith 
311b4319ba4SBarry Smith   ierr = MatMult(pcis->A_BB,v,vec1_B);CHKERRQ(ierr);
312b4319ba4SBarry Smith   ierr = MatMult(pcis->A_IB,v,vec1_D);CHKERRQ(ierr);
31323ce1328SBarry Smith   ierr = KSPSolve(pcis->ksp_D,vec1_D,vec2_D);CHKERRQ(ierr);
314b4319ba4SBarry Smith   ierr = MatMult(pcis->A_BI,vec2_D,vec2_B);CHKERRQ(ierr);
315efb30889SBarry Smith   ierr = VecAXPY(vec1_B,-1.0,vec2_B);CHKERRQ(ierr);
316b4319ba4SBarry Smith   PetscFunctionReturn(0);
317b4319ba4SBarry Smith }
318b4319ba4SBarry Smith 
319b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */
320b4319ba4SBarry Smith /*
321b4319ba4SBarry Smith    PCISScatterArrayNToVecB - Scatters interface node values from a big array (of all local nodes, interior or interface,
322b4319ba4SBarry Smith    including ghosts) into an interface vector, when in SCATTER_FORWARD mode, or vice-versa, when in SCATTER_REVERSE
323b4319ba4SBarry Smith    mode.
324b4319ba4SBarry Smith 
325b4319ba4SBarry Smith    Input parameters:
326b4319ba4SBarry Smith .  pc - preconditioner context
327b4319ba4SBarry Smith .  array_N - [when in SCATTER_FORWARD mode] Array to be scattered into the vector
328b4319ba4SBarry Smith .  v_B - [when in SCATTER_REVERSE mode] Vector to be scattered into the array
329b4319ba4SBarry Smith 
330b4319ba4SBarry Smith    Output parameter:
331b4319ba4SBarry Smith .  array_N - [when in SCATTER_REVERSE mode] Array to receive the scattered vector
332b4319ba4SBarry Smith .  v_B - [when in SCATTER_FORWARD mode] Vector to receive the scattered array
333b4319ba4SBarry Smith 
334b4319ba4SBarry Smith    Notes:
335b4319ba4SBarry Smith    The entries in the array that do not correspond to interface nodes remain unaltered.
336b4319ba4SBarry Smith */
337b4319ba4SBarry Smith #undef __FUNCT__
338b4319ba4SBarry Smith #define __FUNCT__ "PCISScatterArrayNToVecB"
339dba47a55SKris Buschelman PetscErrorCode PETSCKSP_DLLEXPORT PCISScatterArrayNToVecB (PetscScalar *array_N, Vec v_B, InsertMode imode, ScatterMode smode, PC pc)
340b4319ba4SBarry Smith {
3415d0c19d7SBarry Smith   PetscInt       i;
3425d0c19d7SBarry Smith   const PetscInt *idex;
3436849ba73SBarry Smith   PetscErrorCode ierr;
344b4319ba4SBarry Smith   PetscScalar    *array_B;
345b4319ba4SBarry Smith   PC_IS          *pcis = (PC_IS*)(pc->data);
346b4319ba4SBarry Smith 
347b4319ba4SBarry Smith   PetscFunctionBegin;
348b4319ba4SBarry Smith   ierr = VecGetArray(v_B,&array_B);CHKERRQ(ierr);
349b4319ba4SBarry Smith   ierr = ISGetIndices(pcis->is_B_local,&idex);CHKERRQ(ierr);
350b4319ba4SBarry Smith 
351b4319ba4SBarry Smith   if (smode == SCATTER_FORWARD) {
352b4319ba4SBarry Smith     if (imode == INSERT_VALUES) {
353b4319ba4SBarry Smith       for (i=0; i<pcis->n_B; i++) { array_B[i]  = array_N[idex[i]]; }
354b4319ba4SBarry Smith     } else {  /* ADD_VALUES */
355b4319ba4SBarry Smith       for (i=0; i<pcis->n_B; i++) { array_B[i] += array_N[idex[i]]; }
356b4319ba4SBarry Smith     }
357b4319ba4SBarry Smith   } else {  /* SCATTER_REVERSE */
358b4319ba4SBarry Smith     if (imode == INSERT_VALUES) {
359b4319ba4SBarry Smith       for (i=0; i<pcis->n_B; i++) { array_N[idex[i]]  = array_B[i]; }
360b4319ba4SBarry Smith     } else {  /* ADD_VALUES */
361b4319ba4SBarry Smith       for (i=0; i<pcis->n_B; i++) { array_N[idex[i]] += array_B[i]; }
362b4319ba4SBarry Smith     }
363b4319ba4SBarry Smith   }
364b4319ba4SBarry Smith   ierr = ISRestoreIndices(pcis->is_B_local,&idex);CHKERRQ(ierr);
365b4319ba4SBarry Smith   ierr = VecRestoreArray(v_B,&array_B);CHKERRQ(ierr);
366b4319ba4SBarry Smith   PetscFunctionReturn(0);
367b4319ba4SBarry Smith }
368b4319ba4SBarry Smith 
369b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */
370b4319ba4SBarry Smith /*
371b4319ba4SBarry Smith    PCISApplyInvSchur - Solves the Neumann problem related to applying the inverse of the Schur complement.
372b4319ba4SBarry Smith    More precisely, solves the problem:
373b4319ba4SBarry Smith                                         [ A_II  A_IB ] [ . ]   [ 0 ]
374b4319ba4SBarry Smith                                         [            ] [   ] = [   ]
375b4319ba4SBarry Smith                                         [ A_BI  A_BB ] [ x ]   [ b ]
376b4319ba4SBarry Smith 
377b4319ba4SBarry Smith    Input parameters:
378b4319ba4SBarry Smith .  pc - preconditioner context
379b4319ba4SBarry Smith .  b - vector of local interface nodes (including ghosts)
380b4319ba4SBarry Smith 
381b4319ba4SBarry Smith    Output parameters:
382b4319ba4SBarry Smith .  x - vector of local interface nodes (including ghosts); returns the application of the inverse of the Schur
383b4319ba4SBarry Smith        complement to b
384b4319ba4SBarry Smith .  vec1_N - vector of local nodes (interior and interface, including ghosts); returns garbage (used as work space)
385b4319ba4SBarry Smith .  vec2_N - vector of local nodes (interior and interface, including ghosts); returns garbage (used as work space)
386b4319ba4SBarry Smith 
387b4319ba4SBarry Smith */
388b4319ba4SBarry Smith #undef __FUNCT__
389b4319ba4SBarry Smith #define __FUNCT__ "PCISApplyInvSchur"
390dba47a55SKris Buschelman PetscErrorCode PETSCKSP_DLLEXPORT PCISApplyInvSchur (PC pc, Vec b, Vec x, Vec vec1_N, Vec vec2_N)
391b4319ba4SBarry Smith {
392dfbe8321SBarry Smith   PetscErrorCode ierr;
393b4319ba4SBarry Smith   PC_IS          *pcis = (PC_IS*)(pc->data);
394b4319ba4SBarry Smith 
395b4319ba4SBarry Smith   PetscFunctionBegin;
396b4319ba4SBarry Smith   /*
397b4319ba4SBarry Smith     Neumann solvers.
398b4319ba4SBarry Smith     Applying the inverse of the local Schur complement, i.e, solving a Neumann
399b4319ba4SBarry Smith     Problem with zero at the interior nodes of the RHS and extracting the interface
400b4319ba4SBarry Smith     part of the solution. inverse Schur complement is applied to b and the result
401b4319ba4SBarry Smith     is stored in x.
402b4319ba4SBarry Smith   */
403b4319ba4SBarry Smith   /* Setting the RHS vec1_N */
404efb30889SBarry Smith   ierr = VecSet(vec1_N,0.0);CHKERRQ(ierr);
405ca9f406cSSatish Balay   ierr = VecScatterBegin(pcis->N_to_B,b,vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
406ca9f406cSSatish Balay   ierr = VecScatterEnd  (pcis->N_to_B,b,vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
407b4319ba4SBarry Smith   /* Checking for consistency of the RHS */
408b4319ba4SBarry Smith   {
40990d69ab7SBarry Smith     PetscTruth flg = PETSC_FALSE;
41090d69ab7SBarry Smith     ierr = PetscOptionsGetTruth(PETSC_NULL,"-pc_is_check_consistency",&flg,PETSC_NULL);CHKERRQ(ierr);
411b4319ba4SBarry Smith     if (flg) {
412b4319ba4SBarry Smith       PetscScalar average;
4133050cee2SBarry Smith       PetscViewer viewer;
4147adad957SLisandro Dalcin       ierr = PetscViewerASCIIGetStdout(((PetscObject)pc)->comm,&viewer);CHKERRQ(ierr);
4153050cee2SBarry Smith 
416b4319ba4SBarry Smith       ierr = VecSum(vec1_N,&average);CHKERRQ(ierr);
417b4319ba4SBarry Smith       average = average / ((PetscReal)pcis->n);
418b4319ba4SBarry Smith       if (pcis->pure_neumann) {
4193050cee2SBarry Smith 
4203050cee2SBarry Smith         ierr = PetscViewerASCIISynchronizedPrintf(viewer,"Subdomain %04d is floating. Average = % 1.14e\n",
421b4319ba4SBarry Smith                                              PetscGlobalRank,PetscAbsScalar(average));CHKERRQ(ierr);
422b4319ba4SBarry Smith       } else {
4233050cee2SBarry Smith         ierr = PetscViewerASCIISynchronizedPrintf(viewer,"Subdomain %04d is fixed.    Average = % 1.14e\n",
424b4319ba4SBarry Smith                                              PetscGlobalRank,PetscAbsScalar(average));CHKERRQ(ierr);
425b4319ba4SBarry Smith       }
4263050cee2SBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
427b4319ba4SBarry Smith     }
428b4319ba4SBarry Smith   }
429b4319ba4SBarry Smith   /* Solving the system for vec2_N */
43023ce1328SBarry Smith   ierr = KSPSolve(pcis->ksp_N,vec1_N,vec2_N);CHKERRQ(ierr);
431b4319ba4SBarry Smith   /* Extracting the local interface vector out of the solution */
432ca9f406cSSatish Balay   ierr = VecScatterBegin(pcis->N_to_B,vec2_N,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
433ca9f406cSSatish Balay   ierr = VecScatterEnd  (pcis->N_to_B,vec2_N,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
434b4319ba4SBarry Smith   PetscFunctionReturn(0);
435b4319ba4SBarry Smith }
436b4319ba4SBarry Smith 
437b4319ba4SBarry Smith 
438b4319ba4SBarry Smith 
439b4319ba4SBarry Smith 
440b4319ba4SBarry Smith 
441b4319ba4SBarry Smith 
442b4319ba4SBarry Smith 
443b4319ba4SBarry Smith 
444b4319ba4SBarry Smith 
445