1dba47a55SKris Buschelman #define PETSCKSP_DLL 223ce1328SBarry Smith 37c4f633dSBarry Smith #include "../src/ksp/pc/impls/is/pcis.h" 4b4319ba4SBarry Smith 5b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */ 6b4319ba4SBarry Smith /* 7b4319ba4SBarry Smith PCISSetUp - 8b4319ba4SBarry Smith */ 9b4319ba4SBarry Smith #undef __FUNCT__ 10b4319ba4SBarry Smith #define __FUNCT__ "PCISSetUp" 11dba47a55SKris Buschelman PetscErrorCode PETSCKSP_DLLEXPORT PCISSetUp(PC pc) 12b4319ba4SBarry Smith { 13b4319ba4SBarry Smith PC_IS *pcis = (PC_IS*)(pc->data); 14b4319ba4SBarry Smith Mat_IS *matis = (Mat_IS*)pc->mat->data; 1513f74950SBarry Smith PetscInt i; 166849ba73SBarry Smith PetscErrorCode ierr; 17b4319ba4SBarry Smith PetscTruth flg; 18b4319ba4SBarry Smith 19b4319ba4SBarry Smith PetscFunctionBegin; 20b4319ba4SBarry Smith ierr = PetscTypeCompare((PetscObject)pc->mat,MATIS,&flg);CHKERRQ(ierr); 21b4319ba4SBarry Smith if (!flg){ 221302d50aSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Preconditioner type of Neumann Neumman requires matrix of type MATIS"); 23b4319ba4SBarry Smith } 24b4319ba4SBarry Smith 25b4319ba4SBarry Smith pcis->pure_neumann = matis->pure_neumann; 26b4319ba4SBarry Smith 27b4319ba4SBarry Smith /* 28b4319ba4SBarry Smith Creating the local vector vec1_N, containing the inverse of the number 29b4319ba4SBarry Smith of subdomains to which each local node (either owned or ghost) 30b4319ba4SBarry Smith pertains. To accomplish that, we scatter local vectors of 1's to 31b4319ba4SBarry Smith a global vector (adding the values); scatter the result back to 32b4319ba4SBarry Smith local vectors and finally invert the result. 33b4319ba4SBarry Smith */ 34b4319ba4SBarry Smith { 35b4319ba4SBarry Smith Vec counter; 36b4319ba4SBarry Smith ierr = VecDuplicate(matis->x,&pcis->vec1_N);CHKERRQ(ierr); 3723ce1328SBarry Smith ierr = MatGetVecs(pc->pmat,&counter,0);CHKERRQ(ierr); /* temporary auxiliar vector */ 38efb30889SBarry Smith ierr = VecSet(counter,0.0);CHKERRQ(ierr); 39efb30889SBarry Smith ierr = VecSet(pcis->vec1_N,1.0);CHKERRQ(ierr); 40ca9f406cSSatish Balay ierr = VecScatterBegin(matis->ctx,pcis->vec1_N,counter,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 41ca9f406cSSatish Balay ierr = VecScatterEnd (matis->ctx,pcis->vec1_N,counter,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 42ca9f406cSSatish Balay ierr = VecScatterBegin(matis->ctx,counter,pcis->vec1_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 43ca9f406cSSatish Balay ierr = VecScatterEnd (matis->ctx,counter,pcis->vec1_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 44b4319ba4SBarry Smith ierr = VecDestroy(counter);CHKERRQ(ierr); 45b4319ba4SBarry Smith } 46b4319ba4SBarry Smith /* 47b4319ba4SBarry Smith Creating local and global index sets for interior and 48b4319ba4SBarry Smith inteface nodes. Notice that interior nodes have D[i]==1.0. 49b4319ba4SBarry Smith */ 50b4319ba4SBarry Smith { 5113f74950SBarry Smith PetscInt n_I; 5213f74950SBarry Smith PetscInt *idx_I_local,*idx_B_local,*idx_I_global,*idx_B_global; 53b4319ba4SBarry Smith PetscScalar *array; 54b4319ba4SBarry Smith /* Identifying interior and interface nodes, in local numbering */ 55b4319ba4SBarry Smith ierr = VecGetSize(pcis->vec1_N,&pcis->n);CHKERRQ(ierr); 56b4319ba4SBarry Smith ierr = VecGetArray(pcis->vec1_N,&array);CHKERRQ(ierr); 5713f74950SBarry Smith ierr = PetscMalloc(pcis->n*sizeof(PetscInt),&idx_I_local);CHKERRQ(ierr); 5813f74950SBarry Smith ierr = PetscMalloc(pcis->n*sizeof(PetscInt),&idx_B_local);CHKERRQ(ierr); 59b4319ba4SBarry Smith for (i=0, pcis->n_B=0, n_I=0; i<pcis->n; i++) { 60b4319ba4SBarry Smith if (array[i] == 1.0) { idx_I_local[n_I] = i; n_I++; } 61b4319ba4SBarry Smith else { idx_B_local[pcis->n_B] = i; pcis->n_B++; } 62b4319ba4SBarry Smith } 63b4319ba4SBarry Smith /* Getting the global numbering */ 64b4319ba4SBarry Smith idx_B_global = idx_I_local + n_I; /* Just avoiding allocating extra memory, since we have vacant space */ 65b4319ba4SBarry Smith idx_I_global = idx_B_local + pcis->n_B; 66b4319ba4SBarry Smith ierr = ISLocalToGlobalMappingApply(matis->mapping,pcis->n_B,idx_B_local,idx_B_global);CHKERRQ(ierr); 67b4319ba4SBarry Smith ierr = ISLocalToGlobalMappingApply(matis->mapping,n_I, idx_I_local,idx_I_global);CHKERRQ(ierr); 68b4319ba4SBarry Smith /* Creating the index sets. */ 69b4319ba4SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,pcis->n_B,idx_B_local, &pcis->is_B_local);CHKERRQ(ierr); 70b4319ba4SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,pcis->n_B,idx_B_global,&pcis->is_B_global);CHKERRQ(ierr); 71b4319ba4SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,n_I ,idx_I_local, &pcis->is_I_local);CHKERRQ(ierr); 72b4319ba4SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,n_I ,idx_I_global,&pcis->is_I_global);CHKERRQ(ierr); 73b4319ba4SBarry Smith /* Freeing memory and restoring arrays */ 74b4319ba4SBarry Smith ierr = PetscFree(idx_B_local);CHKERRQ(ierr); 75b4319ba4SBarry Smith ierr = PetscFree(idx_I_local);CHKERRQ(ierr); 76b4319ba4SBarry Smith ierr = VecRestoreArray(pcis->vec1_N,&array);CHKERRQ(ierr); 77b4319ba4SBarry Smith } 78b4319ba4SBarry Smith 79b4319ba4SBarry Smith /* 80b4319ba4SBarry Smith Extracting the blocks A_II, A_BI, A_IB and A_BB from A. If the numbering 81b4319ba4SBarry Smith is such that interior nodes come first than the interface ones, we have 82b4319ba4SBarry Smith 83b4319ba4SBarry Smith [ | ] 84b4319ba4SBarry Smith [ A_II | A_IB ] 85b4319ba4SBarry Smith A = [ | ] 86b4319ba4SBarry Smith [-----------+------] 87b4319ba4SBarry Smith [ A_BI | A_BB ] 88b4319ba4SBarry Smith */ 89b4319ba4SBarry Smith 904aa3045dSJed Brown ierr = MatGetSubMatrix(matis->A,pcis->is_I_local,pcis->is_I_local,MAT_INITIAL_MATRIX,&pcis->A_II);CHKERRQ(ierr); 914aa3045dSJed Brown ierr = MatGetSubMatrix(matis->A,pcis->is_I_local,pcis->is_B_local,MAT_INITIAL_MATRIX,&pcis->A_IB);CHKERRQ(ierr); 924aa3045dSJed Brown ierr = MatGetSubMatrix(matis->A,pcis->is_B_local,pcis->is_I_local,MAT_INITIAL_MATRIX,&pcis->A_BI);CHKERRQ(ierr); 934aa3045dSJed Brown ierr = MatGetSubMatrix(matis->A,pcis->is_B_local,pcis->is_B_local,MAT_INITIAL_MATRIX,&pcis->A_BB);CHKERRQ(ierr); 94b4319ba4SBarry Smith 95b4319ba4SBarry Smith /* 96b4319ba4SBarry Smith Creating work vectors and arrays 97b4319ba4SBarry Smith */ 98b4319ba4SBarry Smith /* pcis->vec1_N has already been created */ 99b4319ba4SBarry Smith ierr = VecDuplicate(pcis->vec1_N,&pcis->vec2_N);CHKERRQ(ierr); 100b4319ba4SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,pcis->n-pcis->n_B,&pcis->vec1_D);CHKERRQ(ierr); 101b4319ba4SBarry Smith ierr = VecDuplicate(pcis->vec1_D,&pcis->vec2_D);CHKERRQ(ierr); 102b4319ba4SBarry Smith ierr = VecDuplicate(pcis->vec1_D,&pcis->vec3_D);CHKERRQ(ierr); 103b4319ba4SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,pcis->n_B,&pcis->vec1_B);CHKERRQ(ierr); 104b4319ba4SBarry Smith ierr = VecDuplicate(pcis->vec1_B,&pcis->vec2_B);CHKERRQ(ierr); 105b4319ba4SBarry Smith ierr = VecDuplicate(pcis->vec1_B,&pcis->vec3_B);CHKERRQ(ierr); 10623ce1328SBarry Smith ierr = MatGetVecs(pc->pmat,&pcis->vec1_global,0);CHKERRQ(ierr); 107b4319ba4SBarry Smith ierr = PetscMalloc((pcis->n)*sizeof(PetscScalar),&pcis->work_N);CHKERRQ(ierr); 108b4319ba4SBarry Smith 109b4319ba4SBarry Smith /* Creating the scatter contexts */ 11023ce1328SBarry Smith ierr = VecScatterCreate(pcis->vec1_global,pcis->is_I_global,pcis->vec1_D,(IS)0,&pcis->global_to_D);CHKERRQ(ierr); 111b4319ba4SBarry Smith ierr = VecScatterCreate(pcis->vec1_N,pcis->is_B_local,pcis->vec1_B,(IS)0,&pcis->N_to_B);CHKERRQ(ierr); 11223ce1328SBarry Smith ierr = VecScatterCreate(pcis->vec1_global,pcis->is_B_global,pcis->vec1_B,(IS)0,&pcis->global_to_B);CHKERRQ(ierr); 113b4319ba4SBarry Smith 114b4319ba4SBarry Smith /* Creating scaling "matrix" D, from information in vec1_N */ 115b4319ba4SBarry Smith ierr = VecDuplicate(pcis->vec1_B,&pcis->D);CHKERRQ(ierr); 116ca9f406cSSatish Balay ierr = VecScatterBegin(pcis->N_to_B,pcis->vec1_N,pcis->D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 117ca9f406cSSatish Balay ierr = VecScatterEnd (pcis->N_to_B,pcis->vec1_N,pcis->D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 118b4319ba4SBarry Smith ierr = VecReciprocal(pcis->D);CHKERRQ(ierr); 119b4319ba4SBarry Smith 120b4319ba4SBarry Smith /* See historical note 01, at the bottom of this file. */ 121b4319ba4SBarry Smith 122b4319ba4SBarry Smith /* 123b4319ba4SBarry Smith Creating the KSP contexts for the local Dirichlet and Neumann problems. 124b4319ba4SBarry Smith */ 125b4319ba4SBarry Smith { 126b4319ba4SBarry Smith PC pc_ctx; 127b4319ba4SBarry Smith /* Dirichlet */ 128b4319ba4SBarry Smith ierr = KSPCreate(PETSC_COMM_SELF,&pcis->ksp_D);CHKERRQ(ierr); 1291cee3971SBarry Smith ierr = PetscObjectIncrementTabLevel((PetscObject)pcis->ksp_D,(PetscObject)pc,1);CHKERRQ(ierr); 130b4319ba4SBarry Smith ierr = KSPSetOperators(pcis->ksp_D,pcis->A_II,pcis->A_II,SAME_PRECONDITIONER);CHKERRQ(ierr); 131b4319ba4SBarry Smith ierr = KSPSetOptionsPrefix(pcis->ksp_D,"is_localD_");CHKERRQ(ierr); 132b4319ba4SBarry Smith ierr = KSPGetPC(pcis->ksp_D,&pc_ctx);CHKERRQ(ierr); 133b4319ba4SBarry Smith ierr = PCSetType(pc_ctx,PCLU);CHKERRQ(ierr); 134b4319ba4SBarry Smith ierr = KSPSetType(pcis->ksp_D,KSPPREONLY);CHKERRQ(ierr); 135b4319ba4SBarry Smith ierr = KSPSetFromOptions(pcis->ksp_D);CHKERRQ(ierr); 136b4319ba4SBarry Smith /* the vectors in the following line are dummy arguments, just telling the KSP the vector size. Values are not used */ 137b4319ba4SBarry Smith ierr = KSPSetUp(pcis->ksp_D);CHKERRQ(ierr); 138b4319ba4SBarry Smith /* Neumann */ 139b4319ba4SBarry Smith ierr = KSPCreate(PETSC_COMM_SELF,&pcis->ksp_N);CHKERRQ(ierr); 1401cee3971SBarry Smith ierr = PetscObjectIncrementTabLevel((PetscObject)pcis->ksp_N,(PetscObject)pc,1);CHKERRQ(ierr); 141b4319ba4SBarry Smith ierr = KSPSetOperators(pcis->ksp_N,matis->A,matis->A,SAME_PRECONDITIONER);CHKERRQ(ierr); 142b4319ba4SBarry Smith ierr = KSPSetOptionsPrefix(pcis->ksp_N,"is_localN_");CHKERRQ(ierr); 143b4319ba4SBarry Smith ierr = KSPGetPC(pcis->ksp_N,&pc_ctx);CHKERRQ(ierr); 144b4319ba4SBarry Smith ierr = PCSetType(pc_ctx,PCLU);CHKERRQ(ierr); 145b4319ba4SBarry Smith ierr = KSPSetType(pcis->ksp_N,KSPPREONLY);CHKERRQ(ierr); 146b4319ba4SBarry Smith ierr = KSPSetFromOptions(pcis->ksp_N);CHKERRQ(ierr); 147b4319ba4SBarry Smith { 14890d69ab7SBarry Smith PetscTruth damp_fixed = PETSC_FALSE, 14990d69ab7SBarry Smith remove_nullspace_fixed = PETSC_FALSE, 15090d69ab7SBarry Smith set_damping_factor_floating = PETSC_FALSE, 15190d69ab7SBarry Smith not_damp_floating = PETSC_FALSE, 15290d69ab7SBarry Smith not_remove_nullspace_floating = PETSC_FALSE; 153b4319ba4SBarry Smith PetscReal fixed_factor, 154b4319ba4SBarry Smith floating_factor; 155b4319ba4SBarry Smith 1567adad957SLisandro Dalcin ierr = PetscOptionsGetReal(((PetscObject)pc_ctx)->prefix,"-pc_is_damp_fixed",&fixed_factor,&damp_fixed);CHKERRQ(ierr); 157b4319ba4SBarry Smith if (!damp_fixed) { fixed_factor = 0.0; } 15890d69ab7SBarry Smith ierr = PetscOptionsGetTruth(((PetscObject)pc_ctx)->prefix,"-pc_is_damp_fixed",&damp_fixed,PETSC_NULL);CHKERRQ(ierr); 159b4319ba4SBarry Smith 16090d69ab7SBarry Smith ierr = PetscOptionsGetTruth(((PetscObject)pc_ctx)->prefix,"-pc_is_remove_nullspace_fixed",&remove_nullspace_fixed,PETSC_NULL);CHKERRQ(ierr); 161b4319ba4SBarry Smith 1627adad957SLisandro Dalcin ierr = PetscOptionsGetReal(((PetscObject)pc_ctx)->prefix,"-pc_is_set_damping_factor_floating", 163b4319ba4SBarry Smith &floating_factor,&set_damping_factor_floating);CHKERRQ(ierr); 164b4319ba4SBarry Smith if (!set_damping_factor_floating) { floating_factor = 0.0; } 16590d69ab7SBarry Smith ierr = PetscOptionsGetTruth(((PetscObject)pc_ctx)->prefix,"-pc_is_set_damping_factor_floating",&set_damping_factor_floating,PETSC_NULL);CHKERRQ(ierr); 166b4319ba4SBarry Smith if (!set_damping_factor_floating) { floating_factor = 1.e-12; } 167b4319ba4SBarry Smith 16890d69ab7SBarry Smith ierr = PetscOptionsGetTruth(((PetscObject)pc_ctx)->prefix,"-pc_is_not_damp_floating",¬_damp_floating,PETSC_NULL);CHKERRQ(ierr); 169b4319ba4SBarry Smith 17090d69ab7SBarry Smith ierr = PetscOptionsGetTruth(((PetscObject)pc_ctx)->prefix,"-pc_is_not_remove_nullspace_floating",¬_remove_nullspace_floating,PETSC_NULL);CHKERRQ(ierr); 171b4319ba4SBarry Smith 172b4319ba4SBarry Smith if (pcis->pure_neumann) { /* floating subdomain */ 173b4319ba4SBarry Smith if (!(not_damp_floating)) { 174*c88783f4SHong Zhang ierr = PCFactorSetShiftType(pc_ctx,MAT_SHIFT_NONZERO);CHKERRQ(ierr); 175*c88783f4SHong Zhang ierr = PCFactorSetShiftAmount(pc_ctx,floating_factor);CHKERRQ(ierr); 176b4319ba4SBarry Smith } 177b4319ba4SBarry Smith if (!(not_remove_nullspace_floating)){ 178b4319ba4SBarry Smith MatNullSpace nullsp; 179ee512c37SSatish Balay ierr = MatNullSpaceCreate(PETSC_COMM_SELF,PETSC_TRUE,0,PETSC_NULL,&nullsp);CHKERRQ(ierr); 180d8fd42c4SBarry Smith ierr = KSPSetNullSpace(pcis->ksp_N,nullsp);CHKERRQ(ierr); 181b4319ba4SBarry Smith ierr = MatNullSpaceDestroy(nullsp);CHKERRQ(ierr); 182b4319ba4SBarry Smith } 183b4319ba4SBarry Smith } else { /* fixed subdomain */ 184b4319ba4SBarry Smith if (damp_fixed) { 185*c88783f4SHong Zhang ierr = PCFactorSetShiftType(pc_ctx,MAT_SHIFT_NONZERO);CHKERRQ(ierr); 186*c88783f4SHong Zhang ierr = PCFactorSetShiftAmount(pc_ctx,floating_factor);CHKERRQ(ierr); 187b4319ba4SBarry Smith } 188b4319ba4SBarry Smith if (remove_nullspace_fixed) { 189b4319ba4SBarry Smith MatNullSpace nullsp; 190ee512c37SSatish Balay ierr = MatNullSpaceCreate(PETSC_COMM_SELF,PETSC_TRUE,0,PETSC_NULL,&nullsp);CHKERRQ(ierr); 191d8fd42c4SBarry Smith ierr = KSPSetNullSpace(pcis->ksp_N,nullsp);CHKERRQ(ierr); 192b4319ba4SBarry Smith ierr = MatNullSpaceDestroy(nullsp);CHKERRQ(ierr); 193b4319ba4SBarry Smith } 194b4319ba4SBarry Smith } 195b4319ba4SBarry Smith } 196b4319ba4SBarry Smith /* the vectors in the following line are dummy arguments, just telling the KSP the vector size. Values are not used */ 197b4319ba4SBarry Smith ierr = KSPSetUp(pcis->ksp_N);CHKERRQ(ierr); 198b4319ba4SBarry Smith } 199b4319ba4SBarry Smith 2007c334f02SBarry Smith ierr = ISLocalToGlobalMappingGetInfo(((Mat_IS*)(pc->mat->data))->mapping,&(pcis->n_neigh),&(pcis->neigh),&(pcis->n_shared),&(pcis->shared));CHKERRQ(ierr); 201b4319ba4SBarry Smith pcis->ISLocalToGlobalMappingGetInfoWasCalled = PETSC_TRUE; 202b4319ba4SBarry Smith PetscFunctionReturn(0); 203b4319ba4SBarry Smith } 204b4319ba4SBarry Smith 205b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */ 206b4319ba4SBarry Smith /* 207b4319ba4SBarry Smith PCISDestroy - 208b4319ba4SBarry Smith */ 209b4319ba4SBarry Smith #undef __FUNCT__ 210b4319ba4SBarry Smith #define __FUNCT__ "PCISDestroy" 211dba47a55SKris Buschelman PetscErrorCode PETSCKSP_DLLEXPORT PCISDestroy(PC pc) 212b4319ba4SBarry Smith { 213b4319ba4SBarry Smith PC_IS *pcis = (PC_IS*)(pc->data); 214dfbe8321SBarry Smith PetscErrorCode ierr; 215b4319ba4SBarry Smith 216b4319ba4SBarry Smith PetscFunctionBegin; 217b4319ba4SBarry Smith if (pcis->is_B_local) {ierr = ISDestroy(pcis->is_B_local);CHKERRQ(ierr);} 218b4319ba4SBarry Smith if (pcis->is_I_local) {ierr = ISDestroy(pcis->is_I_local);CHKERRQ(ierr);} 219b4319ba4SBarry Smith if (pcis->is_B_global) {ierr = ISDestroy(pcis->is_B_global);CHKERRQ(ierr);} 220b4319ba4SBarry Smith if (pcis->is_I_global) {ierr = ISDestroy(pcis->is_I_global);CHKERRQ(ierr);} 221b4319ba4SBarry Smith if (pcis->A_II) {ierr = MatDestroy(pcis->A_II);CHKERRQ(ierr);} 222b4319ba4SBarry Smith if (pcis->A_IB) {ierr = MatDestroy(pcis->A_IB);CHKERRQ(ierr);} 223b4319ba4SBarry Smith if (pcis->A_BI) {ierr = MatDestroy(pcis->A_BI);CHKERRQ(ierr);} 224b4319ba4SBarry Smith if (pcis->A_BB) {ierr = MatDestroy(pcis->A_BB);CHKERRQ(ierr);} 225b4319ba4SBarry Smith if (pcis->D) {ierr = VecDestroy(pcis->D);CHKERRQ(ierr);} 226b4319ba4SBarry Smith if (pcis->ksp_N) {ierr = KSPDestroy(pcis->ksp_N);CHKERRQ(ierr);} 227b4319ba4SBarry Smith if (pcis->ksp_D) {ierr = KSPDestroy(pcis->ksp_D);CHKERRQ(ierr);} 228b4319ba4SBarry Smith if (pcis->vec1_N) {ierr = VecDestroy(pcis->vec1_N);CHKERRQ(ierr);} 229b4319ba4SBarry Smith if (pcis->vec2_N) {ierr = VecDestroy(pcis->vec2_N);CHKERRQ(ierr);} 230b4319ba4SBarry Smith if (pcis->vec1_D) {ierr = VecDestroy(pcis->vec1_D);CHKERRQ(ierr);} 231b4319ba4SBarry Smith if (pcis->vec2_D) {ierr = VecDestroy(pcis->vec2_D);CHKERRQ(ierr);} 232b4319ba4SBarry Smith if (pcis->vec3_D) {ierr = VecDestroy(pcis->vec3_D);CHKERRQ(ierr);} 233b4319ba4SBarry Smith if (pcis->vec1_B) {ierr = VecDestroy(pcis->vec1_B);CHKERRQ(ierr);} 234b4319ba4SBarry Smith if (pcis->vec2_B) {ierr = VecDestroy(pcis->vec2_B);CHKERRQ(ierr);} 235b4319ba4SBarry Smith if (pcis->vec3_B) {ierr = VecDestroy(pcis->vec3_B);CHKERRQ(ierr);} 236b4319ba4SBarry Smith if (pcis->vec1_global) {ierr = VecDestroy(pcis->vec1_global);CHKERRQ(ierr);} 237b4319ba4SBarry Smith if (pcis->global_to_D) {ierr = VecScatterDestroy(pcis->global_to_D);CHKERRQ(ierr);} 238b4319ba4SBarry Smith if (pcis->N_to_B) {ierr = VecScatterDestroy(pcis->N_to_B);CHKERRQ(ierr);} 239b4319ba4SBarry Smith if (pcis->global_to_B) {ierr = VecScatterDestroy(pcis->global_to_B);CHKERRQ(ierr);} 24005b42c5fSBarry Smith ierr = PetscFree(pcis->work_N);CHKERRQ(ierr); 241b4319ba4SBarry Smith if (pcis->ISLocalToGlobalMappingGetInfoWasCalled) { 242b4319ba4SBarry Smith ierr = ISLocalToGlobalMappingRestoreInfo((ISLocalToGlobalMapping)0,&(pcis->n_neigh),&(pcis->neigh),&(pcis->n_shared),&(pcis->shared));CHKERRQ(ierr); 243b4319ba4SBarry Smith } 244b4319ba4SBarry Smith PetscFunctionReturn(0); 245b4319ba4SBarry Smith } 246b4319ba4SBarry Smith 247b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */ 248b4319ba4SBarry Smith /* 249b4319ba4SBarry Smith PCISCreate - 250b4319ba4SBarry Smith */ 251b4319ba4SBarry Smith #undef __FUNCT__ 252b4319ba4SBarry Smith #define __FUNCT__ "PCISCreate" 253dba47a55SKris Buschelman PetscErrorCode PETSCKSP_DLLEXPORT PCISCreate(PC pc) 254b4319ba4SBarry Smith { 255b4319ba4SBarry Smith PC_IS *pcis = (PC_IS*)(pc->data); 256b4319ba4SBarry Smith 257b4319ba4SBarry Smith PetscFunctionBegin; 258b4319ba4SBarry Smith pcis->is_B_local = 0; 259b4319ba4SBarry Smith pcis->is_I_local = 0; 260b4319ba4SBarry Smith pcis->is_B_global = 0; 261b4319ba4SBarry Smith pcis->is_I_global = 0; 262b4319ba4SBarry Smith pcis->A_II = 0; 263b4319ba4SBarry Smith pcis->A_IB = 0; 264b4319ba4SBarry Smith pcis->A_BI = 0; 265b4319ba4SBarry Smith pcis->A_BB = 0; 266b4319ba4SBarry Smith pcis->D = 0; 267b4319ba4SBarry Smith pcis->ksp_N = 0; 268b4319ba4SBarry Smith pcis->ksp_D = 0; 269b4319ba4SBarry Smith pcis->vec1_N = 0; 270b4319ba4SBarry Smith pcis->vec2_N = 0; 271b4319ba4SBarry Smith pcis->vec1_D = 0; 272b4319ba4SBarry Smith pcis->vec2_D = 0; 273b4319ba4SBarry Smith pcis->vec3_D = 0; 274b4319ba4SBarry Smith pcis->vec1_B = 0; 275b4319ba4SBarry Smith pcis->vec2_B = 0; 276b4319ba4SBarry Smith pcis->vec3_B = 0; 277b4319ba4SBarry Smith pcis->vec1_global = 0; 278b4319ba4SBarry Smith pcis->work_N = 0; 279b4319ba4SBarry Smith pcis->global_to_D = 0; 280b4319ba4SBarry Smith pcis->N_to_B = 0; 281b4319ba4SBarry Smith pcis->global_to_B = 0; 282b4319ba4SBarry Smith pcis->ISLocalToGlobalMappingGetInfoWasCalled = PETSC_FALSE; 283b4319ba4SBarry Smith PetscFunctionReturn(0); 284b4319ba4SBarry Smith } 285b4319ba4SBarry Smith 286b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */ 287b4319ba4SBarry Smith /* 288b4319ba4SBarry Smith PCISApplySchur - 289b4319ba4SBarry Smith 290b4319ba4SBarry Smith Input parameters: 291b4319ba4SBarry Smith . pc - preconditioner context 292b4319ba4SBarry Smith . v - vector to which the Schur complement is to be applied (it is NOT modified inside this function, UNLESS vec2_B is null) 293b4319ba4SBarry Smith 294b4319ba4SBarry Smith Output parameters: 295b4319ba4SBarry Smith . vec1_B - result of Schur complement applied to chunk 296b4319ba4SBarry Smith . vec2_B - garbage (used as work space), or null (and v is used as workspace) 297b4319ba4SBarry Smith . vec1_D - garbage (used as work space) 298b4319ba4SBarry Smith . vec2_D - garbage (used as work space) 299b4319ba4SBarry Smith 300b4319ba4SBarry Smith */ 301b4319ba4SBarry Smith #undef __FUNCT__ 302b4319ba4SBarry Smith #define __FUNCT__ "PCIterSuApplySchur" 303dba47a55SKris Buschelman PetscErrorCode PETSCKSP_DLLEXPORT PCISApplySchur(PC pc, Vec v, Vec vec1_B, Vec vec2_B, Vec vec1_D, Vec vec2_D) 304b4319ba4SBarry Smith { 305dfbe8321SBarry Smith PetscErrorCode ierr; 306b4319ba4SBarry Smith PC_IS *pcis = (PC_IS*)(pc->data); 307b4319ba4SBarry Smith 308b4319ba4SBarry Smith PetscFunctionBegin; 30913f74950SBarry Smith if (!vec2_B) { vec2_B = v; } 310b4319ba4SBarry Smith 311b4319ba4SBarry Smith ierr = MatMult(pcis->A_BB,v,vec1_B);CHKERRQ(ierr); 312b4319ba4SBarry Smith ierr = MatMult(pcis->A_IB,v,vec1_D);CHKERRQ(ierr); 31323ce1328SBarry Smith ierr = KSPSolve(pcis->ksp_D,vec1_D,vec2_D);CHKERRQ(ierr); 314b4319ba4SBarry Smith ierr = MatMult(pcis->A_BI,vec2_D,vec2_B);CHKERRQ(ierr); 315efb30889SBarry Smith ierr = VecAXPY(vec1_B,-1.0,vec2_B);CHKERRQ(ierr); 316b4319ba4SBarry Smith PetscFunctionReturn(0); 317b4319ba4SBarry Smith } 318b4319ba4SBarry Smith 319b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */ 320b4319ba4SBarry Smith /* 321b4319ba4SBarry Smith PCISScatterArrayNToVecB - Scatters interface node values from a big array (of all local nodes, interior or interface, 322b4319ba4SBarry Smith including ghosts) into an interface vector, when in SCATTER_FORWARD mode, or vice-versa, when in SCATTER_REVERSE 323b4319ba4SBarry Smith mode. 324b4319ba4SBarry Smith 325b4319ba4SBarry Smith Input parameters: 326b4319ba4SBarry Smith . pc - preconditioner context 327b4319ba4SBarry Smith . array_N - [when in SCATTER_FORWARD mode] Array to be scattered into the vector 328b4319ba4SBarry Smith . v_B - [when in SCATTER_REVERSE mode] Vector to be scattered into the array 329b4319ba4SBarry Smith 330b4319ba4SBarry Smith Output parameter: 331b4319ba4SBarry Smith . array_N - [when in SCATTER_REVERSE mode] Array to receive the scattered vector 332b4319ba4SBarry Smith . v_B - [when in SCATTER_FORWARD mode] Vector to receive the scattered array 333b4319ba4SBarry Smith 334b4319ba4SBarry Smith Notes: 335b4319ba4SBarry Smith The entries in the array that do not correspond to interface nodes remain unaltered. 336b4319ba4SBarry Smith */ 337b4319ba4SBarry Smith #undef __FUNCT__ 338b4319ba4SBarry Smith #define __FUNCT__ "PCISScatterArrayNToVecB" 339dba47a55SKris Buschelman PetscErrorCode PETSCKSP_DLLEXPORT PCISScatterArrayNToVecB (PetscScalar *array_N, Vec v_B, InsertMode imode, ScatterMode smode, PC pc) 340b4319ba4SBarry Smith { 3415d0c19d7SBarry Smith PetscInt i; 3425d0c19d7SBarry Smith const PetscInt *idex; 3436849ba73SBarry Smith PetscErrorCode ierr; 344b4319ba4SBarry Smith PetscScalar *array_B; 345b4319ba4SBarry Smith PC_IS *pcis = (PC_IS*)(pc->data); 346b4319ba4SBarry Smith 347b4319ba4SBarry Smith PetscFunctionBegin; 348b4319ba4SBarry Smith ierr = VecGetArray(v_B,&array_B);CHKERRQ(ierr); 349b4319ba4SBarry Smith ierr = ISGetIndices(pcis->is_B_local,&idex);CHKERRQ(ierr); 350b4319ba4SBarry Smith 351b4319ba4SBarry Smith if (smode == SCATTER_FORWARD) { 352b4319ba4SBarry Smith if (imode == INSERT_VALUES) { 353b4319ba4SBarry Smith for (i=0; i<pcis->n_B; i++) { array_B[i] = array_N[idex[i]]; } 354b4319ba4SBarry Smith } else { /* ADD_VALUES */ 355b4319ba4SBarry Smith for (i=0; i<pcis->n_B; i++) { array_B[i] += array_N[idex[i]]; } 356b4319ba4SBarry Smith } 357b4319ba4SBarry Smith } else { /* SCATTER_REVERSE */ 358b4319ba4SBarry Smith if (imode == INSERT_VALUES) { 359b4319ba4SBarry Smith for (i=0; i<pcis->n_B; i++) { array_N[idex[i]] = array_B[i]; } 360b4319ba4SBarry Smith } else { /* ADD_VALUES */ 361b4319ba4SBarry Smith for (i=0; i<pcis->n_B; i++) { array_N[idex[i]] += array_B[i]; } 362b4319ba4SBarry Smith } 363b4319ba4SBarry Smith } 364b4319ba4SBarry Smith ierr = ISRestoreIndices(pcis->is_B_local,&idex);CHKERRQ(ierr); 365b4319ba4SBarry Smith ierr = VecRestoreArray(v_B,&array_B);CHKERRQ(ierr); 366b4319ba4SBarry Smith PetscFunctionReturn(0); 367b4319ba4SBarry Smith } 368b4319ba4SBarry Smith 369b4319ba4SBarry Smith /* -------------------------------------------------------------------------- */ 370b4319ba4SBarry Smith /* 371b4319ba4SBarry Smith PCISApplyInvSchur - Solves the Neumann problem related to applying the inverse of the Schur complement. 372b4319ba4SBarry Smith More precisely, solves the problem: 373b4319ba4SBarry Smith [ A_II A_IB ] [ . ] [ 0 ] 374b4319ba4SBarry Smith [ ] [ ] = [ ] 375b4319ba4SBarry Smith [ A_BI A_BB ] [ x ] [ b ] 376b4319ba4SBarry Smith 377b4319ba4SBarry Smith Input parameters: 378b4319ba4SBarry Smith . pc - preconditioner context 379b4319ba4SBarry Smith . b - vector of local interface nodes (including ghosts) 380b4319ba4SBarry Smith 381b4319ba4SBarry Smith Output parameters: 382b4319ba4SBarry Smith . x - vector of local interface nodes (including ghosts); returns the application of the inverse of the Schur 383b4319ba4SBarry Smith complement to b 384b4319ba4SBarry Smith . vec1_N - vector of local nodes (interior and interface, including ghosts); returns garbage (used as work space) 385b4319ba4SBarry Smith . vec2_N - vector of local nodes (interior and interface, including ghosts); returns garbage (used as work space) 386b4319ba4SBarry Smith 387b4319ba4SBarry Smith */ 388b4319ba4SBarry Smith #undef __FUNCT__ 389b4319ba4SBarry Smith #define __FUNCT__ "PCISApplyInvSchur" 390dba47a55SKris Buschelman PetscErrorCode PETSCKSP_DLLEXPORT PCISApplyInvSchur (PC pc, Vec b, Vec x, Vec vec1_N, Vec vec2_N) 391b4319ba4SBarry Smith { 392dfbe8321SBarry Smith PetscErrorCode ierr; 393b4319ba4SBarry Smith PC_IS *pcis = (PC_IS*)(pc->data); 394b4319ba4SBarry Smith 395b4319ba4SBarry Smith PetscFunctionBegin; 396b4319ba4SBarry Smith /* 397b4319ba4SBarry Smith Neumann solvers. 398b4319ba4SBarry Smith Applying the inverse of the local Schur complement, i.e, solving a Neumann 399b4319ba4SBarry Smith Problem with zero at the interior nodes of the RHS and extracting the interface 400b4319ba4SBarry Smith part of the solution. inverse Schur complement is applied to b and the result 401b4319ba4SBarry Smith is stored in x. 402b4319ba4SBarry Smith */ 403b4319ba4SBarry Smith /* Setting the RHS vec1_N */ 404efb30889SBarry Smith ierr = VecSet(vec1_N,0.0);CHKERRQ(ierr); 405ca9f406cSSatish Balay ierr = VecScatterBegin(pcis->N_to_B,b,vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 406ca9f406cSSatish Balay ierr = VecScatterEnd (pcis->N_to_B,b,vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 407b4319ba4SBarry Smith /* Checking for consistency of the RHS */ 408b4319ba4SBarry Smith { 40990d69ab7SBarry Smith PetscTruth flg = PETSC_FALSE; 41090d69ab7SBarry Smith ierr = PetscOptionsGetTruth(PETSC_NULL,"-pc_is_check_consistency",&flg,PETSC_NULL);CHKERRQ(ierr); 411b4319ba4SBarry Smith if (flg) { 412b4319ba4SBarry Smith PetscScalar average; 4133050cee2SBarry Smith PetscViewer viewer; 4147adad957SLisandro Dalcin ierr = PetscViewerASCIIGetStdout(((PetscObject)pc)->comm,&viewer);CHKERRQ(ierr); 4153050cee2SBarry Smith 416b4319ba4SBarry Smith ierr = VecSum(vec1_N,&average);CHKERRQ(ierr); 417b4319ba4SBarry Smith average = average / ((PetscReal)pcis->n); 418b4319ba4SBarry Smith if (pcis->pure_neumann) { 4193050cee2SBarry Smith 4203050cee2SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"Subdomain %04d is floating. Average = % 1.14e\n", 421b4319ba4SBarry Smith PetscGlobalRank,PetscAbsScalar(average));CHKERRQ(ierr); 422b4319ba4SBarry Smith } else { 4233050cee2SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"Subdomain %04d is fixed. Average = % 1.14e\n", 424b4319ba4SBarry Smith PetscGlobalRank,PetscAbsScalar(average));CHKERRQ(ierr); 425b4319ba4SBarry Smith } 4263050cee2SBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 427b4319ba4SBarry Smith } 428b4319ba4SBarry Smith } 429b4319ba4SBarry Smith /* Solving the system for vec2_N */ 43023ce1328SBarry Smith ierr = KSPSolve(pcis->ksp_N,vec1_N,vec2_N);CHKERRQ(ierr); 431b4319ba4SBarry Smith /* Extracting the local interface vector out of the solution */ 432ca9f406cSSatish Balay ierr = VecScatterBegin(pcis->N_to_B,vec2_N,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 433ca9f406cSSatish Balay ierr = VecScatterEnd (pcis->N_to_B,vec2_N,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 434b4319ba4SBarry Smith PetscFunctionReturn(0); 435b4319ba4SBarry Smith } 436b4319ba4SBarry Smith 437b4319ba4SBarry Smith 438b4319ba4SBarry Smith 439b4319ba4SBarry Smith 440b4319ba4SBarry Smith 441b4319ba4SBarry Smith 442b4319ba4SBarry Smith 443b4319ba4SBarry Smith 444b4319ba4SBarry Smith 445